Query 046822
Match_columns 971
No_of_seqs 556 out of 4092
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:48:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08372 PRT_C: Plant phosphor 100.0 2.1E-51 4.5E-56 386.1 12.7 156 816-971 1-156 (156)
2 COG5038 Ca2+-dependent lipid-b 100.0 1.5E-34 3.3E-39 336.5 43.8 552 2-732 432-1161(1227)
3 KOG1326 Membrane-associated pr 100.0 7.3E-30 1.6E-34 291.6 20.9 635 7-811 207-1073(1105)
4 KOG1028 Ca2+-dependent phospho 99.9 7.3E-25 1.6E-29 247.0 22.5 211 4-353 165-393 (421)
5 COG5038 Ca2+-dependent lipid-b 99.9 6.9E-23 1.5E-27 239.8 33.0 389 270-733 434-841 (1227)
6 KOG1028 Ca2+-dependent phospho 99.9 6E-22 1.3E-26 223.4 23.5 218 261-525 156-393 (421)
7 cd08379 C2D_MCTP_PRT_plant C2 99.9 4.8E-22 1E-26 185.9 14.7 126 599-728 1-126 (126)
8 cd04019 C2C_MCTP_PRT_plant C2 99.9 9.5E-22 2.1E-26 191.0 16.2 149 429-587 1-150 (150)
9 KOG2059 Ras GTPase-activating 99.9 9.2E-22 2E-26 218.4 16.6 239 6-390 5-275 (800)
10 cd04016 C2_Tollip C2 domain pr 99.9 8.8E-21 1.9E-25 176.2 15.0 119 597-731 1-121 (121)
11 KOG2059 Ras GTPase-activating 99.9 6.5E-21 1.4E-25 211.7 15.5 248 429-734 6-278 (800)
12 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.8E-20 3.9E-25 178.3 14.8 126 7-133 1-126 (127)
13 cd04016 C2_Tollip C2 domain pr 99.8 6.7E-20 1.5E-24 170.3 14.9 119 5-132 1-121 (121)
14 KOG1030 Predicted Ca2+-depende 99.8 1.7E-20 3.8E-25 176.4 10.4 119 595-730 3-121 (168)
15 cd08682 C2_Rab11-FIP_classI C2 99.8 8.2E-20 1.8E-24 173.5 13.9 122 8-130 1-125 (126)
16 cd08682 C2_Rab11-FIP_classI C2 99.8 1.9E-19 4.2E-24 171.0 13.6 118 600-730 1-126 (126)
17 cd04015 C2_plant_PLD C2 domain 99.8 6.8E-19 1.5E-23 172.9 15.7 125 597-732 6-158 (158)
18 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.2E-18 2.7E-23 164.3 15.2 119 599-732 1-120 (121)
19 cd08378 C2B_MCTP_PRT_plant C2 99.8 9.1E-19 2E-23 164.3 13.9 118 273-392 1-121 (121)
20 KOG1030 Predicted Ca2+-depende 99.8 5.2E-19 1.1E-23 166.5 11.4 119 1-129 1-119 (168)
21 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.6E-18 3.4E-23 162.2 14.3 116 7-128 1-125 (126)
22 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 2.8E-18 6.1E-23 161.0 14.8 119 600-731 2-121 (121)
23 cd04019 C2C_MCTP_PRT_plant C2 99.8 2.7E-18 5.9E-23 166.8 14.6 125 7-135 1-134 (150)
24 cd08400 C2_Ras_p21A1 C2 domain 99.8 7.4E-18 1.6E-22 159.6 16.1 120 597-733 3-124 (126)
25 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 5.4E-18 1.2E-22 159.1 14.8 118 8-132 2-121 (121)
26 cd08375 C2_Intersectin C2 doma 99.8 7.5E-18 1.6E-22 161.3 15.9 120 594-732 11-136 (136)
27 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 6.3E-18 1.4E-22 162.5 14.5 121 7-132 1-132 (133)
28 cd04022 C2A_MCTP_PRT_plant C2 99.8 7.2E-18 1.6E-22 160.4 14.2 121 599-732 1-126 (127)
29 cd08378 C2B_MCTP_PRT_plant C2 99.8 5.8E-18 1.3E-22 158.9 13.3 116 8-133 2-120 (121)
30 cd08376 C2B_MCTP_PRT C2 domain 99.8 1.1E-17 2.3E-22 156.7 14.8 114 599-732 1-115 (116)
31 cd04042 C2A_MCTP_PRT C2 domain 99.8 1E-17 2.2E-22 157.9 14.8 119 7-133 1-120 (121)
32 cd08377 C2C_MCTP_PRT C2 domain 99.8 1.4E-17 2.9E-22 156.9 15.4 118 598-731 1-118 (119)
33 cd08395 C2C_Munc13 C2 domain t 99.8 5.8E-18 1.3E-22 156.9 11.9 106 7-116 1-113 (120)
34 cd08681 C2_fungal_Inn1p-like C 99.8 7.1E-18 1.5E-22 158.4 12.5 116 598-731 1-118 (118)
35 cd08394 C2A_Munc13 C2 domain f 99.8 8.9E-18 1.9E-22 154.5 12.6 100 271-374 1-102 (127)
36 cd08678 C2_C21orf25-like C2 do 99.7 1.7E-17 3.8E-22 157.5 14.9 119 600-733 1-121 (126)
37 cd04024 C2A_Synaptotagmin-like 99.7 1.3E-17 2.9E-22 159.2 13.9 123 6-132 1-128 (128)
38 cd08681 C2_fungal_Inn1p-like C 99.7 1.3E-17 2.9E-22 156.6 13.2 117 6-132 1-118 (118)
39 cd08377 C2C_MCTP_PRT C2 domain 99.7 3E-17 6.6E-22 154.5 15.1 118 6-132 1-118 (119)
40 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 3.6E-17 7.8E-22 153.9 14.8 118 8-131 2-120 (121)
41 cd08678 C2_C21orf25-like C2 do 99.7 3.5E-17 7.6E-22 155.4 14.7 120 8-136 1-123 (126)
42 cd04046 C2_Calpain C2 domain p 99.7 5.8E-17 1.3E-21 153.7 15.7 121 5-135 2-124 (126)
43 cd08381 C2B_PI3K_class_II C2 d 99.7 1.7E-17 3.8E-22 155.9 11.7 105 5-113 12-121 (122)
44 cd08677 C2A_Synaptotagmin-13 C 99.7 1.4E-17 3E-22 151.9 10.5 92 4-100 12-107 (118)
45 cd04027 C2B_Munc13 C2 domain s 99.7 4.3E-17 9.2E-22 154.9 14.3 116 7-130 2-127 (127)
46 cd04010 C2B_RasA3 C2 domain se 99.7 2.2E-17 4.8E-22 159.3 11.7 109 7-119 1-126 (148)
47 cd04050 C2B_Synaptotagmin-like 99.7 2.4E-17 5.3E-22 151.0 11.2 104 7-117 1-104 (105)
48 cd08400 C2_Ras_p21A1 C2 domain 99.7 1.1E-16 2.3E-21 151.7 15.6 119 6-134 4-124 (126)
49 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 6.8E-17 1.5E-21 152.9 14.0 119 599-730 1-123 (123)
50 cd04024 C2A_Synaptotagmin-like 99.7 7.6E-17 1.7E-21 153.9 14.2 122 598-730 1-127 (128)
51 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 7.4E-17 1.6E-21 155.0 14.2 119 599-731 1-132 (133)
52 cd08382 C2_Smurf-like C2 domai 99.7 9.3E-17 2E-21 151.6 14.2 118 7-130 1-122 (123)
53 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 1.1E-16 2.3E-21 150.7 14.6 117 600-730 2-120 (121)
54 cd04046 C2_Calpain C2 domain p 99.7 1.8E-16 3.9E-21 150.3 16.0 119 597-732 2-122 (126)
55 cd08394 C2A_Munc13 C2 domain f 99.7 9E-17 2E-21 147.9 13.1 101 6-116 2-102 (127)
56 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.1E-16 2.3E-21 151.6 14.1 118 7-130 1-122 (123)
57 cd08392 C2A_SLP-3 C2 domain fi 99.7 5E-17 1.1E-21 153.7 11.7 109 4-114 13-128 (128)
58 cd08391 C2A_C2C_Synaptotagmin_ 99.7 1.1E-16 2.3E-21 151.3 13.9 117 598-731 1-121 (121)
59 cd08375 C2_Intersectin C2 doma 99.7 1.8E-16 3.9E-21 151.8 15.6 124 424-568 11-135 (136)
60 cd08376 C2B_MCTP_PRT C2 domain 99.7 1.8E-16 3.8E-21 148.5 14.5 115 429-569 1-115 (116)
61 cd08393 C2A_SLP-1_2 C2 domain 99.7 6E-17 1.3E-21 153.2 10.9 107 4-114 13-125 (125)
62 cd04029 C2A_SLP-4_5 C2 domain 99.7 2E-16 4.3E-21 149.4 13.6 106 595-712 12-125 (125)
63 cd08677 C2A_Synaptotagmin-13 C 99.7 2E-16 4.3E-21 144.3 12.9 101 595-711 11-118 (118)
64 cd04029 C2A_SLP-4_5 C2 domain 99.7 1.5E-16 3.2E-21 150.3 12.0 107 4-114 13-125 (125)
65 cd08680 C2_Kibra C2 domain fou 99.7 9.9E-17 2.1E-21 150.2 10.7 107 4-113 12-124 (124)
66 cd04015 C2_plant_PLD C2 domain 99.7 3.8E-16 8.3E-21 153.5 15.1 120 5-132 6-157 (158)
67 cd04036 C2_cPLA2 C2 domain pre 99.7 2.9E-16 6.3E-21 147.6 13.7 113 600-732 2-118 (119)
68 cd04017 C2D_Ferlin C2 domain f 99.7 4E-16 8.8E-21 149.9 14.9 124 7-134 2-133 (135)
69 cd04014 C2_PKC_epsilon C2 doma 99.7 5.6E-16 1.2E-20 148.5 15.5 119 3-134 1-130 (132)
70 cd08388 C2A_Synaptotagmin-4-11 99.7 2.3E-16 5E-21 149.6 12.5 111 4-115 14-128 (128)
71 cd04044 C2A_Tricalbin-like C2 99.7 3.4E-16 7.3E-21 148.6 13.6 120 597-732 1-123 (124)
72 cd08391 C2A_C2C_Synaptotagmin_ 99.7 3.1E-16 6.7E-21 148.1 13.3 115 6-132 1-121 (121)
73 cd04039 C2_PSD C2 domain prese 99.7 2.6E-16 5.7E-21 144.1 12.1 96 598-703 1-99 (108)
74 cd08393 C2A_SLP-1_2 C2 domain 99.7 3.2E-16 6.9E-21 148.2 12.8 105 596-712 13-125 (125)
75 cd04028 C2B_RIM1alpha C2 domai 99.7 3.3E-16 7.1E-21 150.1 12.7 106 5-117 28-140 (146)
76 cd04028 C2B_RIM1alpha C2 domai 99.7 3.4E-16 7.5E-21 149.9 12.6 104 598-713 29-138 (146)
77 cd04027 C2B_Munc13 C2 domain s 99.7 6.1E-16 1.3E-20 146.9 14.3 124 599-729 2-127 (127)
78 cd08381 C2B_PI3K_class_II C2 d 99.7 2.8E-16 6E-21 147.8 11.8 100 598-711 13-121 (122)
79 cd08688 C2_KIAA0528-like C2 do 99.7 2.3E-16 5E-21 145.8 11.0 106 8-115 1-109 (110)
80 cd04011 C2B_Ferlin C2 domain s 99.7 3.9E-16 8.5E-21 144.6 12.3 107 4-115 2-110 (111)
81 cd08691 C2_NEDL1-like C2 domai 99.7 1E-15 2.3E-20 145.6 15.1 118 7-130 2-136 (137)
82 cd08395 C2C_Munc13 C2 domain t 99.7 5.6E-16 1.2E-20 143.7 12.4 100 599-712 1-111 (120)
83 cd08387 C2A_Synaptotagmin-8 C2 99.7 7.2E-16 1.6E-20 146.1 13.4 105 595-712 13-123 (124)
84 cd04013 C2_SynGAP_like C2 doma 99.7 1.3E-15 2.9E-20 145.3 15.1 123 597-733 10-140 (146)
85 cd08685 C2_RGS-like C2 domain 99.7 3.6E-16 7.7E-21 146.1 10.9 105 4-113 10-119 (119)
86 cd04031 C2A_RIM1alpha C2 domai 99.7 4.1E-16 8.9E-21 148.2 11.6 107 4-114 14-125 (125)
87 cd04039 C2_PSD C2 domain prese 99.7 5.5E-16 1.2E-20 142.0 11.5 93 6-101 1-97 (108)
88 cd04041 C2A_fungal C2 domain f 99.7 3.2E-16 6.8E-21 145.2 10.0 103 6-114 1-107 (111)
89 cd08688 C2_KIAA0528-like C2 do 99.7 4.7E-16 1E-20 143.8 11.1 102 600-713 1-109 (110)
90 cd04011 C2B_Ferlin C2 domain s 99.7 8.3E-16 1.8E-20 142.5 12.7 102 270-374 2-111 (111)
91 cd04014 C2_PKC_epsilon C2 doma 99.7 1.7E-15 3.8E-20 145.1 15.1 118 597-733 3-130 (132)
92 cd04050 C2B_Synaptotagmin-like 99.7 8.2E-16 1.8E-20 140.9 12.1 103 430-546 2-104 (105)
93 cd04010 C2B_RasA3 C2 domain se 99.7 8.5E-16 1.8E-20 148.3 12.3 101 599-714 1-123 (148)
94 cd04043 C2_Munc13_fungal C2 do 99.7 2.2E-15 4.7E-20 143.4 15.0 118 7-135 2-123 (126)
95 cd04044 C2A_Tricalbin-like C2 99.6 1.2E-15 2.6E-20 144.8 13.1 120 6-134 2-124 (124)
96 cd08389 C2A_Synaptotagmin-14_1 99.6 7.1E-16 1.5E-20 145.5 11.2 108 4-115 14-124 (124)
97 cd04041 C2A_fungal C2 domain f 99.6 6.7E-16 1.4E-20 143.0 10.7 99 598-712 1-107 (111)
98 cd08382 C2_Smurf-like C2 domai 99.6 1.5E-15 3.3E-20 143.3 13.2 118 600-729 2-122 (123)
99 cd08387 C2A_Synaptotagmin-8 C2 99.6 9.2E-16 2E-20 145.4 11.7 107 4-114 14-123 (124)
100 cd04036 C2_cPLA2 C2 domain pre 99.6 1.6E-15 3.4E-20 142.6 13.1 114 430-569 2-118 (119)
101 cd08392 C2A_SLP-3 C2 domain fi 99.6 1.7E-15 3.7E-20 143.2 13.1 105 595-711 12-127 (128)
102 cd08385 C2A_Synaptotagmin-1-5- 99.6 1.3E-15 2.7E-20 144.5 12.1 107 4-114 14-123 (124)
103 cd08385 C2A_Synaptotagmin-1-5- 99.6 2.7E-15 5.8E-20 142.3 13.9 105 595-712 13-123 (124)
104 cd08386 C2A_Synaptotagmin-7 C2 99.6 1.4E-15 3.1E-20 144.4 11.8 108 4-114 14-124 (125)
105 cd04051 C2_SRC2_like C2 domain 99.6 1.2E-15 2.6E-20 144.9 10.8 119 7-128 1-125 (125)
106 cd08373 C2A_Ferlin C2 domain f 99.6 4.4E-15 9.4E-20 141.3 14.5 118 12-136 2-119 (127)
107 cd08373 C2A_Ferlin C2 domain f 99.6 5.2E-15 1.1E-19 140.8 14.8 113 604-733 2-117 (127)
108 cd04018 C2C_Ferlin C2 domain t 99.6 2.4E-15 5.2E-20 145.4 12.0 107 7-116 1-126 (151)
109 cd04030 C2C_KIAA1228 C2 domain 99.6 2.8E-15 6.2E-20 142.8 12.3 108 4-114 14-127 (127)
110 cd04030 C2C_KIAA1228 C2 domain 99.6 4.4E-15 9.6E-20 141.5 13.6 107 595-712 13-127 (127)
111 cd04031 C2A_RIM1alpha C2 domai 99.6 4.4E-15 9.5E-20 141.1 13.5 104 595-712 13-125 (125)
112 cd08685 C2_RGS-like C2 domain 99.6 3.5E-15 7.5E-20 139.4 12.3 101 598-711 12-119 (119)
113 cd08386 C2A_Synaptotagmin-7 C2 99.6 4.7E-15 1E-19 140.8 13.0 105 595-712 13-124 (125)
114 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 2.5E-15 5.4E-20 148.2 11.2 109 4-115 25-138 (162)
115 cd04038 C2_ArfGAP C2 domain pr 99.6 9.2E-15 2E-19 140.8 14.7 90 6-101 2-91 (145)
116 cd08521 C2A_SLP C2 domain firs 99.6 6.1E-15 1.3E-19 139.7 13.0 105 595-711 11-123 (123)
117 cd08406 C2B_Synaptotagmin-12 C 99.6 3.4E-15 7.4E-20 142.4 11.1 93 4-98 13-110 (136)
118 cd08407 C2B_Synaptotagmin-13 C 99.6 3.1E-15 6.7E-20 142.5 10.7 93 4-98 13-112 (138)
119 cd04051 C2_SRC2_like C2 domain 99.6 4.1E-15 8.8E-20 141.2 11.5 113 599-727 1-125 (125)
120 cd04017 C2D_Ferlin C2 domain f 99.6 1.2E-14 2.6E-19 139.6 14.8 120 429-568 2-131 (135)
121 cd04049 C2_putative_Elicitor-r 99.6 6.2E-15 1.4E-19 139.7 12.1 103 598-713 1-108 (124)
122 PLN03008 Phospholipase D delta 99.6 4.7E-15 1E-19 172.8 13.4 104 619-733 74-178 (868)
123 cd04038 C2_ArfGAP C2 domain pr 99.6 6.7E-15 1.4E-19 141.8 12.4 91 597-701 1-91 (145)
124 cd08388 C2A_Synaptotagmin-4-11 99.6 1.1E-14 2.5E-19 138.0 13.7 105 596-712 14-127 (128)
125 cd08680 C2_Kibra C2 domain fou 99.6 5.5E-15 1.2E-19 138.4 11.3 104 595-711 11-124 (124)
126 cd04032 C2_Perforin C2 domain 99.6 7.3E-15 1.6E-19 137.8 11.9 94 595-702 25-120 (127)
127 cd08690 C2_Freud-1 C2 domain f 99.6 2.1E-14 4.5E-19 138.6 15.2 118 600-732 4-137 (155)
128 cd08521 C2A_SLP C2 domain firs 99.6 6.6E-15 1.4E-19 139.5 11.6 106 4-113 12-123 (123)
129 cd08383 C2A_RasGAP C2 domain ( 99.6 1.6E-14 3.5E-19 135.5 13.9 115 8-132 2-117 (117)
130 cd08690 C2_Freud-1 C2 domain f 99.6 2.1E-14 4.6E-19 138.5 14.9 123 8-134 4-138 (155)
131 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 1.2E-14 2.6E-19 143.4 13.4 105 595-712 24-137 (162)
132 cd04021 C2_E3_ubiquitin_ligase 99.6 2.1E-14 4.6E-19 135.8 14.6 118 6-130 2-124 (125)
133 cd04049 C2_putative_Elicitor-r 99.6 1.1E-14 2.4E-19 138.0 12.7 109 6-117 1-110 (124)
134 cd08675 C2B_RasGAP C2 domain s 99.6 6.2E-15 1.3E-19 141.5 11.0 106 8-117 1-122 (137)
135 cd04018 C2C_Ferlin C2 domain t 99.6 1.2E-14 2.5E-19 140.6 12.8 112 430-546 2-127 (151)
136 cd04045 C2C_Tricalbin-like C2 99.6 1E-14 2.3E-19 136.6 12.1 104 598-715 1-105 (120)
137 cd04040 C2D_Tricalbin-like C2 99.6 1.9E-14 4.1E-19 134.5 13.1 112 600-727 1-114 (115)
138 cd08389 C2A_Synaptotagmin-14_1 99.6 1.8E-14 3.8E-19 136.0 12.9 103 596-712 14-123 (124)
139 cd04013 C2_SynGAP_like C2 doma 99.6 3.5E-14 7.6E-19 135.6 14.9 121 5-136 10-142 (146)
140 cd04043 C2_Munc13_fungal C2 do 99.6 3.2E-14 7E-19 135.3 14.7 119 429-571 2-123 (126)
141 cd04045 C2C_Tricalbin-like C2 99.6 2E-14 4.4E-19 134.7 12.9 104 6-117 1-105 (120)
142 cd08390 C2A_Synaptotagmin-15-1 99.6 1.4E-14 3E-19 137.2 11.8 108 4-115 12-123 (123)
143 cd08390 C2A_Synaptotagmin-15-1 99.6 2.7E-14 6E-19 135.2 13.7 106 595-712 11-122 (123)
144 cd08383 C2A_RasGAP C2 domain ( 99.6 3.2E-14 7E-19 133.4 13.4 112 600-731 2-117 (117)
145 cd08676 C2A_Munc13-like C2 dom 99.6 1.5E-14 3.2E-19 140.0 11.3 100 3-113 25-153 (153)
146 cd08384 C2B_Rabphilin_Doc2 C2 99.6 1.4E-14 3E-19 139.2 10.8 107 4-116 11-122 (133)
147 cd08402 C2B_Synaptotagmin-1 C2 99.6 1.6E-14 3.5E-19 139.2 11.2 106 4-115 13-123 (136)
148 cd04032 C2_Perforin C2 domain 99.6 1.9E-14 4E-19 135.0 10.9 92 5-100 27-118 (127)
149 cd08675 C2B_RasGAP C2 domain s 99.5 2.2E-14 4.8E-19 137.6 10.8 102 600-715 1-122 (137)
150 cd08408 C2B_Synaptotagmin-14_1 99.5 2.7E-14 5.9E-19 137.0 11.4 107 4-115 13-125 (138)
151 cd04021 C2_E3_ubiquitin_ligase 99.5 6.5E-14 1.4E-18 132.4 13.8 116 599-729 3-124 (125)
152 cd04040 C2D_Tricalbin-like C2 99.5 5.9E-14 1.3E-18 131.1 12.0 112 8-127 1-113 (115)
153 cd08404 C2B_Synaptotagmin-4 C2 99.5 1.6E-14 3.5E-19 139.0 8.1 107 4-116 13-124 (136)
154 cd04009 C2B_Munc13-like C2 dom 99.5 4.5E-14 9.8E-19 135.3 11.0 97 4-101 14-118 (133)
155 cd08692 C2B_Tac2-N C2 domain s 99.5 6.4E-14 1.4E-18 131.2 11.7 93 4-99 12-110 (135)
156 cd04026 C2_PKC_alpha_gamma C2 99.5 8.4E-14 1.8E-18 133.3 12.8 104 598-715 13-123 (131)
157 KOG1326 Membrane-associated pr 99.5 3.6E-14 7.8E-19 164.1 11.8 390 272-698 206-703 (1105)
158 cd04009 C2B_Munc13-like C2 dom 99.5 8E-14 1.7E-18 133.6 12.5 93 596-701 14-118 (133)
159 cd08405 C2B_Synaptotagmin-7 C2 99.5 5E-14 1.1E-18 135.7 11.0 94 4-99 13-111 (136)
160 cd08676 C2A_Munc13-like C2 dom 99.5 8.8E-14 1.9E-18 134.7 12.2 101 424-542 24-153 (153)
161 cd08404 C2B_Synaptotagmin-4 C2 99.5 5.2E-14 1.1E-18 135.5 10.5 103 596-713 13-123 (136)
162 cd08406 C2B_Synaptotagmin-12 C 99.5 4.9E-14 1.1E-18 134.4 10.0 104 595-713 12-123 (136)
163 cd08410 C2B_Synaptotagmin-17 C 99.5 7.7E-14 1.7E-18 133.9 11.3 108 4-116 12-124 (135)
164 cd04037 C2E_Ferlin C2 domain f 99.5 8.7E-14 1.9E-18 131.4 11.5 91 7-101 1-93 (124)
165 cd08407 C2B_Synaptotagmin-13 C 99.5 3.6E-14 7.9E-19 135.1 8.9 106 595-713 12-125 (138)
166 KOG0696 Serine/threonine prote 99.5 7E-15 1.5E-19 155.1 4.0 107 4-116 178-289 (683)
167 cd08403 C2B_Synaptotagmin-3-5- 99.5 9.4E-14 2E-18 133.4 11.4 106 3-114 11-121 (134)
168 cd08402 C2B_Synaptotagmin-1 C2 99.5 5E-14 1.1E-18 135.7 9.1 104 595-713 12-123 (136)
169 cd08409 C2B_Synaptotagmin-15 C 99.5 7.7E-14 1.7E-18 134.1 10.2 93 4-99 13-110 (137)
170 cd04026 C2_PKC_alpha_gamma C2 99.5 1.2E-13 2.6E-18 132.3 11.3 107 4-116 11-122 (131)
171 cd04052 C2B_Tricalbin-like C2 99.5 1.3E-13 2.8E-18 127.6 10.8 101 23-134 9-110 (111)
172 cd00275 C2_PLC_like C2 domain 99.5 4.4E-13 9.5E-18 127.9 14.7 117 599-731 3-127 (128)
173 cd08384 C2B_Rabphilin_Doc2 C2 99.5 5.7E-14 1.2E-18 134.9 8.4 104 595-713 10-121 (133)
174 cd08405 C2B_Synaptotagmin-7 C2 99.5 9.7E-14 2.1E-18 133.7 10.0 104 595-713 12-123 (136)
175 cd08691 C2_NEDL1-like C2 domai 99.5 5E-13 1.1E-17 127.3 14.6 118 599-729 2-136 (137)
176 cd04052 C2B_Tricalbin-like C2 99.5 2.3E-13 4.9E-18 125.9 11.5 97 619-732 10-109 (111)
177 cd08686 C2_ABR C2 domain in th 99.5 5.3E-13 1.2E-17 121.4 13.4 87 600-698 1-92 (118)
178 cd00275 C2_PLC_like C2 domain 99.5 6.1E-13 1.3E-17 126.9 14.2 117 6-132 2-127 (128)
179 PLN03200 cellulose synthase-in 99.5 1.1E-13 2.3E-18 176.5 11.2 117 596-732 1978-2100(2102)
180 cd00276 C2B_Synaptotagmin C2 d 99.5 1.6E-13 3.4E-18 132.2 9.1 108 4-117 12-124 (134)
181 cd08403 C2B_Synaptotagmin-3-5- 99.5 1.8E-13 4E-18 131.4 9.4 104 595-713 11-122 (134)
182 cd00276 C2B_Synaptotagmin C2 d 99.5 2.1E-13 4.5E-18 131.3 9.6 105 595-714 11-123 (134)
183 cd04037 C2E_Ferlin C2 domain f 99.5 4.6E-13 1E-17 126.5 11.7 91 429-528 1-93 (124)
184 KOG0696 Serine/threonine prote 99.5 6.1E-14 1.3E-18 148.1 5.8 104 598-715 180-290 (683)
185 cd08410 C2B_Synaptotagmin-17 C 99.4 6.6E-13 1.4E-17 127.4 12.4 106 595-714 11-124 (135)
186 cd04048 C2A_Copine C2 domain f 99.4 4.3E-13 9.3E-18 126.2 10.4 98 11-114 5-113 (120)
187 cd04048 C2A_Copine C2 domain f 99.4 5.1E-13 1.1E-17 125.7 10.8 101 603-712 5-113 (120)
188 cd08686 C2_ABR C2 domain in th 99.4 1.2E-12 2.5E-17 119.1 12.6 81 8-99 1-93 (118)
189 PLN03008 Phospholipase D delta 99.4 6.2E-13 1.3E-17 155.4 13.4 124 6-137 14-181 (868)
190 KOG1011 Neurotransmitter relea 99.4 1.6E-13 3.4E-18 150.4 7.9 124 5-136 294-427 (1283)
191 cd04035 C2A_Rabphilin_Doc2 C2 99.4 7.5E-13 1.6E-17 125.2 11.5 97 4-102 13-114 (123)
192 cd04035 C2A_Rabphilin_Doc2 C2 99.4 2E-12 4.4E-17 122.3 13.9 96 597-706 14-118 (123)
193 cd08692 C2B_Tac2-N C2 domain s 99.4 2E-12 4.4E-17 121.1 12.2 104 595-712 11-122 (135)
194 cd08409 C2B_Synaptotagmin-15 C 99.4 5.9E-13 1.3E-17 128.0 8.8 105 595-713 12-124 (137)
195 KOG1013 Synaptic vesicle prote 99.4 1.6E-13 3.4E-18 141.4 4.6 218 4-352 91-327 (362)
196 cd08408 C2B_Synaptotagmin-14_1 99.4 3.4E-12 7.3E-17 122.5 12.0 105 595-713 12-125 (138)
197 KOG1327 Copine [Signal transdu 99.4 8.6E-12 1.9E-16 139.1 16.7 245 464-768 41-324 (529)
198 cd04047 C2B_Copine C2 domain s 99.4 3.7E-12 8E-17 117.9 10.2 94 602-711 4-108 (110)
199 KOG1013 Synaptic vesicle prote 99.3 6.9E-13 1.5E-17 136.7 5.0 230 429-711 94-339 (362)
200 PLN03200 cellulose synthase-in 99.3 2.7E-12 5.8E-17 164.0 10.9 120 4-134 1978-2101(2102)
201 cd04047 C2B_Copine C2 domain s 99.3 5.7E-12 1.2E-16 116.6 9.9 91 9-101 3-100 (110)
202 PF00168 C2: C2 domain; Inter 99.3 1.3E-11 2.8E-16 108.3 9.9 82 8-93 1-85 (85)
203 KOG1011 Neurotransmitter relea 99.2 2.2E-11 4.7E-16 133.9 8.5 127 597-730 294-422 (1283)
204 PF00168 C2: C2 domain; Inter 99.2 8.2E-11 1.8E-15 103.1 9.8 82 430-520 1-85 (85)
205 PLN02270 phospholipase D alpha 99.2 1.5E-10 3.2E-15 135.9 14.0 126 597-733 7-149 (808)
206 cd08374 C2F_Ferlin C2 domain s 99.1 2.6E-10 5.7E-15 107.0 10.5 93 600-703 2-125 (133)
207 KOG1328 Synaptic vesicle prote 99.1 1.3E-11 2.8E-16 137.8 1.2 126 6-137 114-305 (1103)
208 cd08374 C2F_Ferlin C2 domain s 99.1 3.2E-10 7E-15 106.4 9.8 93 8-101 2-123 (133)
209 cd00030 C2 C2 domain. The C2 d 99.1 6.4E-10 1.4E-14 100.3 10.7 99 600-711 1-102 (102)
210 cd00030 C2 C2 domain. The C2 d 99.1 6.5E-10 1.4E-14 100.3 10.6 101 8-113 1-102 (102)
211 PLN02223 phosphoinositide phos 99.1 1.4E-09 2.9E-14 123.1 14.8 122 597-731 408-536 (537)
212 smart00239 C2 Protein kinase C 99.0 2E-09 4.3E-14 97.3 11.0 91 600-703 2-96 (101)
213 smart00239 C2 Protein kinase C 99.0 2.4E-09 5.2E-14 96.7 10.9 91 7-101 1-94 (101)
214 PLN02223 phosphoinositide phos 99.0 3.9E-09 8.4E-14 119.5 13.8 119 5-132 408-536 (537)
215 PLN02952 phosphoinositide phos 99.0 6.7E-09 1.4E-13 120.3 14.8 120 597-732 469-597 (599)
216 KOG1031 Predicted Ca2+-depende 98.9 3.5E-09 7.6E-14 115.6 9.6 124 5-132 2-135 (1169)
217 PLN02222 phosphoinositide phos 98.9 1.5E-08 3.3E-13 116.9 14.8 122 597-731 451-580 (581)
218 PLN02270 phospholipase D alpha 98.9 1.5E-08 3.2E-13 119.3 13.3 125 5-137 7-152 (808)
219 PLN02230 phosphoinositide phos 98.9 1.8E-08 4E-13 116.4 13.7 122 597-731 468-597 (598)
220 PLN02952 phosphoinositide phos 98.8 2.3E-08 5E-13 115.9 13.7 118 5-131 469-597 (599)
221 PLN02228 Phosphoinositide phos 98.8 4E-08 8.7E-13 113.2 14.7 122 597-732 430-561 (567)
222 KOG1031 Predicted Ca2+-depende 98.8 1.3E-08 2.8E-13 111.2 9.4 119 598-731 3-135 (1169)
223 KOG0169 Phosphoinositide-speci 98.8 2.4E-08 5.2E-13 115.0 11.7 120 599-732 617-744 (746)
224 KOG0169 Phosphoinositide-speci 98.8 3.4E-08 7.4E-13 113.7 11.4 118 7-133 617-744 (746)
225 cd08689 C2_fungal_Pkc1p C2 dom 98.8 3E-08 6.6E-13 86.9 8.3 86 600-700 1-87 (109)
226 PLN02230 phosphoinositide phos 98.7 4.8E-08 1E-12 113.0 12.1 119 5-132 468-597 (598)
227 cd08689 C2_fungal_Pkc1p C2 dom 98.7 3.6E-08 7.8E-13 86.4 8.0 84 8-101 1-88 (109)
228 KOG1264 Phospholipase C [Lipid 98.7 6.4E-08 1.4E-12 110.0 11.5 101 598-715 1065-1173(1267)
229 KOG1328 Synaptic vesicle prote 98.7 5.7E-09 1.2E-13 117.1 2.1 94 5-99 946-1047(1103)
230 PLN02222 phosphoinositide phos 98.7 1.5E-07 3.3E-12 108.9 13.4 119 5-132 451-580 (581)
231 PLN02228 Phosphoinositide phos 98.7 2E-07 4.4E-12 107.5 13.4 120 6-134 431-562 (567)
232 KOG1264 Phospholipase C [Lipid 98.5 4.1E-07 8.9E-12 103.7 10.0 95 2-101 1061-1162(1267)
233 PLN02352 phospholipase D epsil 98.4 1.6E-06 3.5E-11 102.3 12.6 117 597-733 9-131 (758)
234 PF04842 DUF639: Plant protein 98.4 1.9E-06 4.1E-11 99.1 12.4 158 788-965 508-673 (683)
235 PF06398 Pex24p: Integral pero 98.3 2.7E-06 5.8E-11 96.1 12.0 150 788-951 34-195 (359)
236 KOG1327 Copine [Signal transdu 98.3 5.4E-06 1.2E-10 93.4 11.9 178 301-528 41-236 (529)
237 cd08683 C2_C2cd3 C2 domain fou 98.3 1.8E-06 4E-11 77.9 6.5 110 600-711 1-143 (143)
238 PF11696 DUF3292: Protein of u 98.2 2.1E-05 4.6E-10 90.5 13.9 91 879-969 280-391 (642)
239 PLN02352 phospholipase D epsil 98.1 2.3E-05 4.9E-10 92.9 11.8 119 5-137 9-134 (758)
240 PF12416 DUF3668: Cep120 prote 98.0 0.00078 1.7E-08 73.7 22.1 127 8-137 2-136 (340)
241 KOG0905 Phosphoinositide 3-kin 98.0 4.7E-06 1E-10 99.1 4.9 110 4-116 1522-1636(1639)
242 KOG0905 Phosphoinositide 3-kin 97.8 1.6E-05 3.6E-10 94.6 4.1 103 597-712 1523-1634(1639)
243 cd08683 C2_C2cd3 C2 domain fou 97.7 3.5E-05 7.7E-10 69.8 4.8 105 8-113 1-143 (143)
244 PF12416 DUF3668: Cep120 prote 97.7 0.0035 7.6E-08 68.7 20.0 245 274-529 2-296 (340)
245 PLN02964 phosphatidylserine de 97.5 0.00018 4E-09 84.9 6.8 87 596-702 52-140 (644)
246 cd08684 C2A_Tac2-N C2 domain f 97.4 0.00022 4.7E-09 60.0 4.7 82 275-356 2-94 (103)
247 cd08684 C2A_Tac2-N C2 domain f 97.2 0.00035 7.6E-09 58.8 4.1 87 9-100 2-93 (103)
248 PLN02964 phosphatidylserine de 97.1 0.00059 1.3E-08 80.7 6.1 86 428-529 54-140 (644)
249 KOG3837 Uncharacterized conser 97.0 0.00042 9E-09 74.5 2.6 126 5-134 366-504 (523)
250 KOG2060 Rab3 effector RIM1 and 96.8 0.00078 1.7E-08 72.0 3.0 108 595-713 266-379 (405)
251 KOG2060 Rab3 effector RIM1 and 96.7 0.0012 2.5E-08 70.8 3.0 109 3-117 266-381 (405)
252 KOG3837 Uncharacterized conser 96.5 0.0024 5.1E-08 68.9 4.1 119 598-732 367-503 (523)
253 PF15627 CEP76-C2: CEP76 C2 do 96.0 0.069 1.5E-06 51.4 10.9 130 4-136 7-153 (156)
254 KOG1265 Phospholipase C [Lipid 95.5 0.076 1.6E-06 62.9 10.3 95 596-714 701-806 (1189)
255 KOG1265 Phospholipase C [Lipid 95.3 0.07 1.5E-06 63.2 9.4 88 2-101 699-796 (1189)
256 cd08398 C2_PI3K_class_I_alpha 94.8 0.15 3.3E-06 49.8 8.9 91 5-99 7-106 (158)
257 PF15627 CEP76-C2: CEP76 C2 do 94.6 0.32 6.9E-06 47.0 10.3 125 598-732 9-150 (156)
258 KOG1452 Predicted Rho GTPase-a 94.4 0.074 1.6E-06 55.6 5.9 131 596-752 49-182 (442)
259 cd08693 C2_PI3K_class_I_beta_d 94.1 0.26 5.6E-06 49.2 8.9 75 5-81 7-87 (173)
260 cd08398 C2_PI3K_class_I_alpha 94.1 0.36 7.9E-06 47.2 9.7 84 429-525 9-105 (158)
261 cd08693 C2_PI3K_class_I_beta_d 93.7 0.43 9.4E-06 47.6 9.6 86 429-525 9-119 (173)
262 PF10358 NT-C2: N-terminal C2 93.4 1.9 4.1E-05 41.5 13.6 114 598-732 7-135 (143)
263 KOG1452 Predicted Rho GTPase-a 93.1 0.17 3.7E-06 53.0 5.8 118 3-134 48-168 (442)
264 PF10358 NT-C2: N-terminal C2 93.1 1.9 4.1E-05 41.6 13.0 122 5-134 6-136 (143)
265 cd08380 C2_PI3K_like C2 domain 92.3 0.83 1.8E-05 44.9 9.5 88 429-526 9-107 (156)
266 cd08380 C2_PI3K_like C2 domain 92.3 0.62 1.3E-05 45.7 8.5 94 5-99 7-107 (156)
267 cd08397 C2_PI3K_class_III C2 d 91.8 0.97 2.1E-05 44.4 9.1 69 621-699 29-107 (159)
268 cd08397 C2_PI3K_class_III C2 d 91.6 0.7 1.5E-05 45.4 7.8 70 451-525 28-106 (159)
269 cd04012 C2A_PI3K_class_II C2 d 91.4 0.68 1.5E-05 46.2 7.8 96 4-99 6-119 (171)
270 cd04012 C2A_PI3K_class_II C2 d 90.0 1.3 2.9E-05 44.1 8.4 93 429-526 9-119 (171)
271 cd08687 C2_PKN-like C2 domain 89.5 2.7 6E-05 36.3 8.4 84 26-132 8-92 (98)
272 cd08399 C2_PI3K_class_I_gamma 89.2 2.6 5.5E-05 42.1 9.5 69 429-507 11-87 (178)
273 cd08399 C2_PI3K_class_I_gamma 87.7 3.1 6.6E-05 41.6 8.9 124 5-133 9-138 (178)
274 PF02453 Reticulon: Reticulon; 86.7 0.08 1.7E-06 52.8 -2.9 66 886-951 82-151 (169)
275 cd08687 C2_PKN-like C2 domain 85.0 8 0.00017 33.6 8.6 82 624-731 10-92 (98)
276 cd08695 C2_Dock-B C2 domains f 83.3 6.4 0.00014 39.6 8.8 57 39-96 54-111 (189)
277 PF00792 PI3K_C2: Phosphoinosi 82.2 5 0.00011 38.6 7.5 75 40-133 22-101 (142)
278 cd08694 C2_Dock-A C2 domains f 82.1 9.1 0.0002 38.6 9.3 57 39-96 54-113 (196)
279 smart00142 PI3K_C2 Phosphoinos 81.9 7 0.00015 35.1 7.8 75 7-81 12-92 (100)
280 PF00792 PI3K_C2: Phosphoinosi 81.5 11 0.00023 36.3 9.5 54 637-699 23-85 (142)
281 smart00142 PI3K_C2 Phosphoinos 81.1 8.6 0.00019 34.5 8.1 70 430-508 13-91 (100)
282 PF14429 DOCK-C2: C2 domain in 79.2 6 0.00013 40.0 7.2 59 39-98 60-120 (184)
283 cd08695 C2_Dock-B C2 domains f 79.1 16 0.00035 36.8 9.9 38 301-338 53-93 (189)
284 PF15625 CC2D2AN-C2: CC2D2A N- 79.0 32 0.0007 34.1 12.2 89 452-545 36-125 (168)
285 KOG3543 Ca2+-dependent activat 77.4 22 0.00048 41.1 11.4 110 271-388 340-456 (1218)
286 KOG1329 Phospholipase D1 [Lipi 77.0 2.9 6.3E-05 50.8 4.7 103 620-732 136-240 (887)
287 PF15625 CC2D2AN-C2: CC2D2A N- 76.9 38 0.00083 33.6 12.0 105 26-136 36-164 (168)
288 cd08694 C2_Dock-A C2 domains f 76.2 24 0.00053 35.6 10.2 38 301-338 53-93 (196)
289 PF11696 DUF3292: Protein of u 75.8 4.7 0.0001 47.7 5.8 75 869-952 90-164 (642)
290 PF08372 PRT_C: Plant phosphor 74.4 7.4 0.00016 37.8 5.9 33 788-821 87-119 (156)
291 KOG3543 Ca2+-dependent activat 72.1 32 0.0007 39.9 10.9 118 599-732 342-459 (1218)
292 PF14429 DOCK-C2: C2 domain in 70.6 18 0.0004 36.4 8.2 59 634-698 59-120 (184)
293 PF06398 Pex24p: Integral pero 70.5 4.8 0.0001 45.6 4.3 43 889-931 18-63 (359)
294 PF11618 DUF3250: Protein of u 69.4 13 0.00027 33.9 5.9 99 30-133 2-105 (107)
295 PF11618 DUF3250: Protein of u 66.6 35 0.00075 31.1 8.1 93 626-732 2-105 (107)
296 PTZ00447 apical membrane antig 63.9 61 0.0013 35.2 10.3 107 272-388 58-170 (508)
297 PF08151 FerI: FerI (NUC094) d 62.6 16 0.00034 30.5 4.7 44 95-138 2-47 (72)
298 PF07162 B9-C2: Ciliary basal 58.4 1.2E+02 0.0026 30.0 11.2 83 431-523 5-101 (168)
299 PF14924 DUF4497: Protein of u 55.1 30 0.00066 31.7 5.8 62 663-733 30-105 (112)
300 cd08679 C2_DOCK180_related C2 54.8 96 0.0021 31.1 9.9 58 40-98 54-115 (178)
301 PF04842 DUF639: Plant protein 51.4 12 0.00026 44.5 3.1 61 886-946 492-555 (683)
302 cd08697 C2_Dock-D C2 domains f 49.5 58 0.0013 32.8 7.2 41 39-80 57-97 (185)
303 PF08151 FerI: FerI (NUC094) d 49.3 26 0.00057 29.2 3.9 46 350-397 2-48 (72)
304 KOG3385 V-SNARE [Intracellular 48.6 52 0.0011 29.9 5.8 18 869-886 38-55 (118)
305 PTZ00447 apical membrane antig 48.1 2.1E+02 0.0047 31.2 11.3 108 599-729 59-170 (508)
306 KOG4111 Translocase of outer m 47.1 46 0.00099 31.0 5.4 68 853-925 29-98 (136)
307 KOG0694 Serine/threonine prote 46.7 5.9 0.00013 46.9 -0.3 96 25-134 26-122 (694)
308 cd08679 C2_DOCK180_related C2 46.6 60 0.0013 32.5 6.9 47 479-525 62-115 (178)
309 cd05137 RasGAP_CLA2_BUD2 CLA2/ 45.5 24 0.00052 40.1 4.3 45 688-734 1-46 (395)
310 cd08696 C2_Dock-C C2 domains f 45.5 64 0.0014 32.3 6.7 42 39-81 55-96 (179)
311 cd01459 vWA_copine_like VWA Co 45.1 34 0.00073 36.5 5.0 37 724-768 33-70 (254)
312 cd08697 C2_Dock-D C2 domains f 44.7 1E+02 0.0022 31.1 8.1 65 634-698 56-123 (185)
313 PF14909 SPATA6: Spermatogenes 42.5 2.2E+02 0.0047 27.3 9.2 72 452-529 19-102 (140)
314 PF02453 Reticulon: Reticulon; 42.3 8.3 0.00018 38.2 0.0 27 900-926 1-27 (169)
315 PF06219 DUF1005: Protein of u 41.5 71 0.0015 35.9 6.8 111 26-136 35-170 (460)
316 PF06219 DUF1005: Protein of u 40.9 2.8E+02 0.006 31.5 11.1 104 624-731 37-166 (460)
317 cd08696 C2_Dock-C C2 domains f 40.8 83 0.0018 31.5 6.7 56 464-524 54-117 (179)
318 PHA01159 hypothetical protein 39.7 91 0.002 28.4 6.0 80 875-967 4-83 (114)
319 PF14909 SPATA6: Spermatogenes 39.6 1.2E+02 0.0026 28.9 7.1 83 274-356 4-101 (140)
320 PF07162 B9-C2: Ciliary basal 38.8 3.3E+02 0.0071 26.9 10.7 84 8-98 4-103 (168)
321 PF14851 FAM176: FAM176 family 37.9 67 0.0015 31.1 5.3 13 790-802 14-26 (153)
322 KOG1329 Phospholipase D1 [Lipi 37.0 75 0.0016 39.3 6.7 85 27-118 138-224 (887)
323 PF10409 PTEN_C2: C2 domain of 33.2 3.1E+02 0.0066 25.8 9.3 94 5-100 3-98 (134)
324 PF00957 Synaptobrevin: Synapt 31.9 1.4E+02 0.0029 26.0 6.0 34 879-912 36-69 (89)
325 KOG2419 Phosphatidylserine dec 31.7 5.1 0.00011 46.5 -3.8 74 272-353 280-361 (975)
326 KOG0904 Phosphatidylinositol 3 31.6 72 0.0016 39.2 5.3 121 5-132 342-471 (1076)
327 KOG4027 Uncharacterized conser 30.2 2.4E+02 0.0052 27.3 7.4 65 623-696 26-108 (187)
328 PF01544 CorA: CorA-like Mg2+ 28.6 1.5E+02 0.0032 32.1 7.1 69 872-946 194-262 (292)
329 KOG4269 Rac GTPase-activating 28.2 33 0.00071 41.9 1.8 63 271-335 758-826 (1112)
330 PF09726 Macoilin: Transmembra 22.5 3.1E+02 0.0068 33.9 8.8 17 925-941 90-106 (697)
331 KOG2419 Phosphatidylserine dec 21.9 24 0.00052 41.3 -0.8 38 26-64 304-341 (975)
332 COG5249 RER1 Golgi protein inv 20.7 7.2E+02 0.016 23.6 8.5 12 814-825 57-68 (180)
333 PF04281 Tom22: Mitochondrial 20.6 3.5E+02 0.0076 25.8 6.7 48 868-916 49-98 (137)
334 PF08174 Anillin: Cell divisio 20.6 4.5E+02 0.0098 24.9 7.9 48 624-671 35-89 (140)
335 PF14963 CAML: Calcium signal- 20.0 5.3E+02 0.012 27.1 8.3 36 798-833 168-203 (263)
No 1
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=100.00 E-value=2.1e-51 Score=386.09 Aligned_cols=156 Identities=67% Similarity=1.204 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCCCCCcCCccCCCCCCCCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046822 816 IPAILLYLSLLGLWRYRSRSRHPPHMDIRLSQADSVFPDELDEEFDSFPTSRGADIVRIRYDRLRSVAGRIQTVVGDMAT 895 (971)
Q Consensus 816 ~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dee~d~~~~~~~~~~~~~r~~~~~~~~~~vQ~~~~~~a~ 895 (971)
+|+++|++|++++|||++||++|+|||.++|++|++++||+|||+|++|++++++++++|||+||+++++|||++|++|+
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At 80 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVAT 80 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccChhhHHHHHHHHHHHHhhhhhhhhhhhhhheeeccccCCcccCCCCChhhhhhhcCCCCccCCC
Q 046822 896 QGERFQALISWRDPRATFLFVIFCLFAAIGFYAVPVRVVFALSGVYVLRPPRFRSKLPSPALSFFRRLPSKADTLL 971 (971)
Q Consensus 896 ~~Er~~~l~~W~~p~~t~~~~~~~~~~~~~~~~vp~r~i~l~~g~~~~r~p~~~~~~~~~~~~~~~r~p~~~~~~~ 971 (971)
+|||++|+|||+||++|++|+++|+++++++|++|+||++++||+|++|||+||.++|++++|||+||||++|+||
T Consensus 81 ~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs~~d~~l 156 (156)
T PF08372_consen 81 QGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPSRSDSML 156 (156)
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCCchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=1.5e-34 Score=336.53 Aligned_cols=552 Identities=22% Similarity=0.290 Sum_probs=385.6
Q ss_pred CCCCeEEEEEEEEeeCCCCCC--CCCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 2 GDGKEKLVVEVIAAHNLMPKD--GEGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 2 ~~~~~~L~V~V~~a~~L~~~d--~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
|..-|+|.|+|.+|++|...+ .++..|||+.+.+.+. ..+|+++++++||+|||+|+..+.... +.|.++|||
T Consensus 432 ~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~----d~L~LslyD 507 (1227)
T COG5038 432 GTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFT----DPLNLSLYD 507 (1227)
T ss_pred CCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccC----CceeEEEEe
Confidence 345689999999999999888 5889999999998754 579999999999999999999998766 799999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeecccccccCCCCCCCCCCccccccc
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTTEEVVKKGGFVSSLTPSSAFSKKN 158 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~e~~~~~~~~~k~~ 158 (971)
.+.+. +|+.+|++.++|..+........ +-+.+.. ..+..|.|...+.|.+...... ..
T Consensus 508 ~n~~~-sd~vvG~~~l~L~~L~~~~~~~n-e~~e~~~---~~k~vGrL~yDl~ffp~~e~k~----------------~~ 566 (1227)
T COG5038 508 FNSFK-SDKVVGSTQLDLALLHQNPVKKN-ELYEFLR---NTKNVGRLTYDLRFFPVIEDKK----------------EL 566 (1227)
T ss_pred ccccC-CcceeeeEEechHHhhhcccccc-ceeeeec---cCccceEEEEeeeeecccCCcc----------------cc
Confidence 88765 89999999999999975443222 2233322 2356799999999986553100 00
Q ss_pred cccccCCCcccccccccCCCCCCCCCccccCccCcCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCCCCccCC
Q 046822 159 KKLQQQSPVMQVQQQHFGHQDMMSKPTHQQQSQNHVKPMEPNPGELKPVVITTAPRPVIPGARGGPTFGGGGGGGVYVNG 238 (971)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 238 (971)
. +. . +| .|
T Consensus 567 ~----------------~s----~-----------------------------e~---~e-------------------- 574 (1227)
T COG5038 567 K----------------GS----V-----------------------------EP---LE-------------------- 574 (1227)
T ss_pred c----------------cc----c-----------------------------CC---cc--------------------
Confidence 0 00 0 00 00
Q ss_pred CCCcccccCCCCCCCCCCcccccccccccccceeEEEEEEEEeecCC-CCCCC-CeEEEEEECC-eeeeeeeecCC-CCc
Q 046822 239 SGEFSLKETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDIS-LFGGG-EIVAEVKLGN-YRGITKRVSSN-HLQ 314 (971)
Q Consensus 239 ~~~~~~~~~~p~~~~~~~~~~~~~~~~d~v~~~~~L~V~v~~a~~L~-~~~~~-dpyV~v~~~~-~~~kT~~~~~~-nP~ 314 (971)
+.. .+.+.+++.++++|. ..++- .-++++.+.. ..+.|+.++.+ +|.
T Consensus 575 -----------d~n------------------~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~ 625 (1227)
T COG5038 575 -----------DSN------------------TGILKVTLREVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPS 625 (1227)
T ss_pred -----------cCC------------------cceeEEEeeccccccCccccccceeEEEEecceEEeccceeeeccCCc
Confidence 000 177899999999998 22322 3338888886 56677999999 999
Q ss_pred cccEEEEeccCCCcceEEEEEecCCCCcccEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCccccEEEEEEEEEeccc
Q 046822 315 WDQVFAFSKDCIQSSAAEIFVKESDKDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGTQA 394 (971)
Q Consensus 315 wne~f~f~~~~~~~~~l~v~v~D~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 394 (971)
||+.+...+.+-....+.+.+.|....+.+|+...+|.++..+... .-.||++..+ .|+|.++.+
T Consensus 626 wn~~~~~~v~~~~ns~~~~~~~d~~~g~~i~~~~~~l~~li~~t~d----t~~~f~~~~~------kg~I~~t~~----- 690 (1227)
T COG5038 626 WNLQYNVLVTDRKNSSIKVVTFDVQSGKVIATEGSTLPDLIDRTLD----TFLVFPLRNP------KGRIFITNY----- 690 (1227)
T ss_pred eeeecceEeccCcceeEEEEecccccCceeccccccchHhhhcccc----ceEEEEcCCC------cceEEEEec-----
Confidence 9999999999887788999999965677888888888888765431 2389998854 378888773
Q ss_pred chHHHHHhhccccccCCCCccccccccccCCceEEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECC-eEEEeeecCC
Q 046822 395 DEAFAEAWHSKAANVHFDGLCSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGN-QFLKTRIAAP 473 (971)
Q Consensus 395 d~~~~~~~~~~~~~~~~~~~~~~~~k~~~~p~l~~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~-~~~rT~~~~~ 473 (971)
|.+-.. .....++.+.....+.++|.|..|.+|...... +++|||+++.+++ .++||-..
T Consensus 691 -------W~Pi~~------~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g----~~~dPya~v~~n~~~k~rti~~-- 751 (1227)
T COG5038 691 -------WKPIYN------AGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPG----GKSDPYATVLVNNLVKYRTIYG-- 751 (1227)
T ss_pred -------cceeec------cccccceeeecCccceEEEEeehhhcccccccC----cccccceEEEecceeEEEEecc--
Confidence 321110 011123333455677899999999999866665 8999999999976 78888877
Q ss_pred CCCCCCCCCcccceeEEEeecCCCCeEEEEEEeCcCCCCCceeEEEEEecccccccccccc----------cc-------
Q 046822 474 SATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQ----------VV------- 536 (971)
Q Consensus 474 ~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~----------~~------- 536 (971)
..+.||.|++.....+..+.. .|.++++|....+.|..+|++.++++++..+.++.. +.
T Consensus 752 ---~~~~npiw~~i~Yv~v~sk~~-r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~ 827 (1227)
T COG5038 752 ---SSTLNPIWNEILYVPVTSKNQ-RLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGK 827 (1227)
T ss_pred ---cCccccceeeeEEEEecCCcc-EEeeeeecchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccC
Confidence 899999999999998888765 699999999888899999999999999876321110 00
Q ss_pred ---------ceeEEcccCCC-----------CCC---C-----cce---------------------ee-----------
Q 046822 537 ---------SRWFNLENHFG-----------NQG---E-----SKV---------------------VT----------- 556 (971)
Q Consensus 537 ---------~~w~~L~~~~~-----------~~~---~-----~~~---------------------~~----------- 556 (971)
.+.|+...... ++. + +.. ..
T Consensus 828 ~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~ln 907 (1227)
T COG5038 828 KVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLN 907 (1227)
T ss_pred CcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhh
Confidence 01111100000 000 0 000 00
Q ss_pred ---ee-ee--------------eeEEEEEccCccc-ccCccc--------ccc-----------------CC------C-
Q 046822 557 ---RF-GS--------------RIHLRVSLDGGYH-VLDEAT--------LYS-----------------SD------V- 585 (971)
Q Consensus 557 ---~~-~g--------------~i~l~l~l~~~~~-~~~~~~--------~~~-----------------sd------~- 585 (971)
.| +| .+.+++.++...| .+-.+. ... .+ -
T Consensus 908 e~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~ 987 (1227)
T COG5038 908 EALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKV 987 (1227)
T ss_pred hhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCce
Confidence 00 01 1222222332111 000000 000 00 0
Q ss_pred -----------------ccc-------------------ccccC----CCceeEEEEEEEeeeCCCCCCccCCCCcccCc
Q 046822 586 -----------------KPT-------------------AKQLW----KPHIGVLEMGILGATGLMPMKFKEGKGGSVDA 625 (971)
Q Consensus 586 -----------------~~~-------------------~~~~~----~~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dp 625 (971)
+|. ..++. ..+.|.|.+.+.+|.||+..+. +|.+ ||
T Consensus 988 v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~---ng~s-Dp 1063 (1227)
T COG5038 988 VCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDE---NGYS-DP 1063 (1227)
T ss_pred eeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCCCccccc---CCCC-Cc
Confidence 000 00000 1357999999999999998765 8999 99
Q ss_pred EEEEEECCE-EEeeecccCCCCCeecceeEEEeeC-CCcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCc
Q 046822 626 YCVAKYGQK-WVRTRTVVDSLSPKWNEQYTWEVFD-PCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDR 703 (971)
Q Consensus 626 y~~~~~g~~-~~rT~~~~~~~nP~Wne~~~~~v~~-~~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~ 703 (971)
||++.++++ .++|+++++++||.|||.+.++|.. ....++|.|+|||. +.+++.||.+.|+|+.|+.+.
T Consensus 1064 fv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~---------~~knd~lg~~~idL~~l~~~~ 1134 (1227)
T COG5038 1064 FVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDS---------GEKNDLLGTAEIDLSKLEPGG 1134 (1227)
T ss_pred eEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeeccc---------CCCccccccccccHhhcCcCC
Confidence 999999766 7999999999999999999999984 56699999999994 359999999999999999888
Q ss_pred eEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 704 VYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 704 ~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
.+....+|..+. .+ ...|.++....|.
T Consensus 1135 ~~n~~i~ldgk~-~~-~~~g~~~~~~~~r 1161 (1227)
T COG5038 1135 TTNSNIPLDGKT-FI-VLDGTLHPGFNFR 1161 (1227)
T ss_pred ccceeeeccCcc-eE-ecccEeecceecc
Confidence 777777776433 11 2357777777665
No 3
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.97 E-value=7.3e-30 Score=291.61 Aligned_cols=635 Identities=16% Similarity=0.170 Sum_probs=377.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCC----CCCC--CcceEEEEEEeCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPD----IAEL--PYKHIEVNVFNER 80 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~----~~~l--~~~~L~i~V~d~~ 80 (971)
.++++|.+|++|.+.|..+.+|||+.+.+.++.+.|.++.+|+||.||++..|.-.. +..+ .-..+.++|||.+
T Consensus 207 ~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~d 286 (1105)
T KOG1326|consen 207 PLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLD 286 (1105)
T ss_pred hhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhh
Confidence 467888899999999999999999999999999999999999999999999987211 1111 1247789999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeecccccccCCCCCCCCCCccccccccc
Q 046822 81 RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTTEEVVKKGGFVSSLTPSSAFSKKNKK 160 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~e~~~~~~~~~k~~~~ 160 (971)
+.+ .++|+|+......-... .....|+++..++ ...|++.++..++..+.+ .
T Consensus 287 r~g-~~ef~gr~~~~p~V~~~---~p~lkw~p~~rg~---~l~gd~l~a~eliq~~~~---i------------------ 338 (1105)
T KOG1326|consen 287 RSG-INEFKGRKKQRPYVMVQ---CPALKWVPTMRGA---FLDGDVLIAAELIQIGKP---I------------------ 338 (1105)
T ss_pred hhc-hHHhhcccccceEEEec---CCccceEEeeccc---ccccchhHHHHHHhhcCC---C------------------
Confidence 987 89999998886555443 2234789987543 234555544333221110 0
Q ss_pred cccCCCcccccccccCCCCCCCCCccccCccCcCCCCCCCCCCCCCcccCCCCCCCCCCCCC-CCCcCCCCCCCCccCCC
Q 046822 161 LQQQSPVMQVQQQHFGHQDMMSKPTHQQQSQNHVKPMEPNPGELKPVVITTAPRPVIPGARG-GPTFGGGGGGGVYVNGS 239 (971)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~ 239 (971)
+.|..+. ...+..
T Consensus 339 -------------------------------------------------------~~p~~~~~~~~~~v----------- 352 (1105)
T KOG1326|consen 339 -------------------------------------------------------PQPPPQREIIFSLV----------- 352 (1105)
T ss_pred -------------------------------------------------------CCCCcccccceecc-----------
Confidence 0000000 000000
Q ss_pred CCcccccCCCCCCCCCCcccccccccccccceeEEEEEEEEeecCC---CCCCCCeEEEEEECCeeeeeeeecCC--CCc
Q 046822 240 GEFSLKETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDIS---LFGGGEIVAEVKLGNYRGITKRVSSN--HLQ 314 (971)
Q Consensus 240 ~~~~~~~~~p~~~~~~~~~~~~~~~~d~v~~~~~L~V~v~~a~~L~---~~~~~dpyV~v~~~~~~~kT~~~~~~--nP~ 314 (971)
...++|.+.. +.+.|-..--+|+. ......|-+.+.+|++..++..|.+- ||.
T Consensus 353 ----p~~iRp~~q~------------------~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npn 410 (1105)
T KOG1326|consen 353 ----PKKIRPKTQI------------------GKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPN 410 (1105)
T ss_pred ----ccCCCcceee------------------eeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCC
Confidence 0112222211 22233222334443 34567899999999999999998875 999
Q ss_pred cccEEEEeccC-----CCcceEEEEEecC---CCCcccEEEEEE-ccccCCCCCCCCCCCCe------------------
Q 046822 315 WDQVFAFSKDC-----IQSSAAEIFVKES---DKDDFLGRIWFD-LNEVPRRVPPDSQLAPQ------------------ 367 (971)
Q Consensus 315 wne~f~f~~~~-----~~~~~l~v~v~D~---~~d~~lG~~~i~-l~~l~~~~~~~~~~~~~------------------ 367 (971)
++..|.+-... .....+.+.|.|. +.-..+|.|.+. +.....+........||
T Consensus 411 f~s~~~~~~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~ 490 (1105)
T KOG1326|consen 411 FPSRVLGRLVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIR 490 (1105)
T ss_pred CceeEEEEEEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhh
Confidence 99777654332 2345778888876 788999999875 33333222111111111
Q ss_pred -----EEE-----------------eecCCCCc------cccEEEEEEEEEecccch---HHH--HHhhccc-------c
Q 046822 368 -----WYR-----------------MEDRRGDR------SKGGEVMVSIWFGTQADE---AFA--EAWHSKA-------A 407 (971)
Q Consensus 368 -----w~~-----------------L~~~~~~~------~~~G~i~l~~~~~~~~d~---~~~--~~~~~~~-------~ 407 (971)
|+. +....+.. ..++...|.++ +...| .|. +.|...- .
T Consensus 491 ~~~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiy--n~ele~v~ef~~l~D~~~~f~l~rG~~~ 568 (1105)
T KOG1326|consen 491 HCNSSTLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIY--NMELEMVAEFRGLQDWAVTFKLYRGKEG 568 (1105)
T ss_pred hccccCCCCCccccccceehhhhhhccccccccccccccccccceEEEEe--hhhhhhHHHHhhhhhccceeEeeecccc
Confidence 111 11100000 01112222221 11111 111 1121100 0
Q ss_pred ccCCC-------------------Cccccccc---cc--cCCceEEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECC
Q 046822 408 NVHFD-------------------GLCSLKSK---VY--LSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGN 463 (971)
Q Consensus 408 ~~~~~-------------------~~~~~~~k---~~--~~p~l~~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~ 463 (971)
.+..+ ......+. .+ ..|....+||.|++|.+|.+.|.+ |.+||||++.+|+
T Consensus 569 ~e~~e~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~D~n----g~adpYv~l~lGk 644 (1105)
T KOG1326|consen 569 LECLEQQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPSDGN----GDADPYVKLLLGK 644 (1105)
T ss_pred CCCcccchhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeeccccCCC----CCcCceeeeeecc
Confidence 00000 00000000 00 135566899999999999999999 9999999999999
Q ss_pred eEEEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEEEEeCcCCCCCceeEEEEEeccc-cccccccccccceeEEc
Q 046822 464 QFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSA-VERRTDDKQVVSRWFNL 542 (971)
Q Consensus 464 ~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d~d~~~~d~~iG~~~i~L~~-l~~~~~~~~~~~~w~~L 542 (971)
+....+..+. .+++||+|++.|++.+..|.+..|+++|||+|..+.|+.||+..|+|++ .....+.++...+-|..
T Consensus 645 ~~~~d~~~yi---p~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v 721 (1105)
T KOG1326|consen 645 KRTLDRAHYI---PNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLENRWLTRHRARCGLAQTYCV 721 (1105)
T ss_pred chhhhhhhcC---cCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhhcccCcCCcccCccceeee
Confidence 8755554432 8999999999999999999999999999999999999999999999986 44444555555555665
Q ss_pred ccCCCCCCCcce-------------ee-eeeeeeEEEEEccCcccccC--------------------------------
Q 046822 543 ENHFGNQGESKV-------------VT-RFGSRIHLRVSLDGGYHVLD-------------------------------- 576 (971)
Q Consensus 543 ~~~~~~~~~~~~-------------~~-~~~g~i~l~l~l~~~~~~~~-------------------------------- 576 (971)
.+...+.+.... .. -+.+.. ..+.+.|.....|
T Consensus 722 ~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpe 800 (1105)
T KOG1326|consen 722 SGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDIYDEKEAKTIEVPHLGNAWERLALWILMNQGLVPE 800 (1105)
T ss_pred eccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhhhcccccCCCCCcccchHHHHHHHHhhhhcCcCCc
Confidence 555543322110 00 001111 1111111100000
Q ss_pred --ccccccCCCccccc----ccC------------------CCceeEEEEEEEeeeCCCCCCccCCCC--cccCcEEEEE
Q 046822 577 --EATLYSSDVKPTAK----QLW------------------KPHIGVLEMGILGATGLMPMKFKEGKG--GSVDAYCVAK 630 (971)
Q Consensus 577 --~~~~~~sd~~~~~~----~~~------------------~~~~g~L~v~v~~a~~L~~~~~~~~~g--~s~dpy~~~~ 630 (971)
+.....++..|-.+ ++| ++..-.|+|.|..-.+...-+. ++.| .| |.||.-.
T Consensus 801 hvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~lrviiWnt~~v~l~dd-~~~ge~~s-dIyv~gw 878 (1105)
T KOG1326|consen 801 HVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYELRVIIWNTDKVRLNDD-EITGEKMS-DIYVKGW 878 (1105)
T ss_pred ccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhheeEEEEEeeccceeecCc-cceeeecc-ceEEecc
Confidence 00000111111111 122 1345678888887777665432 2333 45 9999999
Q ss_pred E-C--CEEEeeecccCCC----CCeecceeEEEe----------------------eCCCcEEEEEEEeCCCCCccccCC
Q 046822 631 Y-G--QKWVRTRTVVDSL----SPKWNEQYTWEV----------------------FDPCTVITVGVFDNCSLDKNIINN 681 (971)
Q Consensus 631 ~-g--~~~~rT~~~~~~~----nP~Wne~~~~~v----------------------~~~~~~l~i~V~D~~~~~~~~~~~ 681 (971)
+ | ..+++|.+.++++ |-.|.-.|.|+- +..-..|.|+|||+|.|+
T Consensus 879 ~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~ws~dete~k~p~rl~iqiWD~d~fs------ 952 (1105)
T KOG1326|consen 879 VLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYSWSLDETEFKIPARLIIQIWDNDKFS------ 952 (1105)
T ss_pred cccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhccccccccccCchheEEEecccCccC------
Confidence 7 3 3457888887765 667765555421 011126999999999997
Q ss_pred CCCCCceeEEEEEEcccccCC----------------------ceEeeeEeceecCCCCcccceEEEEEEEEeecchhHH
Q 046822 682 SGGRDSRIGKVRIRLSTLESD----------------------RVYTHSYPLLMLHPSGVKKMGELHLAVRFSCANLVNM 739 (971)
Q Consensus 682 ~~~~d~~iG~~~i~l~~l~~~----------------------~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~~~~~ 739 (971)
+|++||..+++|+++..+ +....|||+........--+|.+++++..- ..
T Consensus 953 ---~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a~~~~~~~l~Gkvem~leil-----t~ 1024 (1105)
T KOG1326|consen 953 ---KDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQAEEGDAKVLAGKVEMSLEIL-----TE 1024 (1105)
T ss_pred ---hhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeeecCCCcceecceeeeehhhh-----hh
Confidence 999999999999986432 445789999976432222378888887532 11
Q ss_pred HHhhcCCCCCCCcccCCCchhhHHHHHHHHHHHHHHhhccc-----CCCcccccccccCCchhHHHHHHHHHHHHHc
Q 046822 740 LHMYAMPLLPKMHYVHPLSVHQLETLRYQALNVVSSWLNRA-----EPPLGRESMRNWHKPIYSTLSLAFFFLLVLM 811 (971)
Q Consensus 740 ~~~~~~p~~p~~~y~~p~~~~~~~~l~~~~~~~~~~~~~~~-----~ppl~~~s~~~W~~p~~s~~~~~~~~~~~~~ 811 (971)
.|...+ ....+|+ |||.|+++.|.|-..+...+.|++|-.+-|+
T Consensus 1025 ----------------------~EA~~~------PAG~gr~ePn~Le~P~Rpdtsf~wl~sp~K~~~~i~W~~yr~~ 1073 (1105)
T KOG1326|consen 1025 ----------------------KEADER------PAGKGRDEPNKLEPPNRPDTSFLWLTSPCKSFKFILWHRYRWY 1073 (1105)
T ss_pred ----------------------hhhhhC------ccccCCCCCCcCCCCCCCCccchhhcccccchhhhhHHHHHHH
Confidence 111111 1223444 5799999999999666666777877766665
No 4
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=7.3e-25 Score=247.00 Aligned_cols=211 Identities=28% Similarity=0.395 Sum_probs=176.7
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC---eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK---QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
....|.|+|++|++|+++|..|.+||||++.+.. .+.+|+++++|+||.|||+|.|.+.. +++....|.+.|||+|
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~-~~l~~~~L~l~V~~~d 243 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPY-EELSNRVLHLSVYDFD 243 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCH-HHhccCEEEEEEEecC
Confidence 4567999999999999999778899999999984 47899999999999999999999763 4677899999999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCC-eeeeEEEEEEEeeecccccccCCCCCCCCCCcccccccc
Q 046822 81 RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFS-HIRGEISLKLFVSTTEEVVKKGGFVSSLTPSSAFSKKNK 159 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~~~~~~~~~~~~~~e~~~~~~~~~k~~~ 159 (971)
+|+ ++++||++.++|..+..... ...|.+|....... ...|+|.+.+.|.+.
T Consensus 244 rfs-r~~~iGev~~~l~~~~~~~~--~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~------------------------ 296 (421)
T KOG1028|consen 244 RFS-RHDFIGEVILPLGEVDLLST--TLFWKDLQPSSTDSEELAGELLLSLCYLPT------------------------ 296 (421)
T ss_pred Ccc-cccEEEEEEecCcccccccc--ceeeeccccccCCcccccceEEEEEEeecC------------------------
Confidence 998 89999999999999865433 45799998863322 222799888887421
Q ss_pred ccccCCCcccccccccCCCCCCCCCccccCccCcCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCCCCccCCC
Q 046822 160 KLQQQSPVMQVQQQHFGHQDMMSKPTHQQQSQNHVKPMEPNPGELKPVVITTAPRPVIPGARGGPTFGGGGGGGVYVNGS 239 (971)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 239 (971)
T Consensus 297 -------------------------------------------------------------------------------- 296 (421)
T KOG1028|consen 297 -------------------------------------------------------------------------------- 296 (421)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccCCCCCCCCCCcccccccccccccceeEEEEEEEEeecCC---CCCCCCeEEEEEECC-----eeeeeeeecCC
Q 046822 240 GEFSLKETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDIS---LFGGGEIVAEVKLGN-----YRGITKRVSSN 311 (971)
Q Consensus 240 ~~~~~~~~~p~~~~~~~~~~~~~~~~d~v~~~~~L~V~v~~a~~L~---~~~~~dpyV~v~~~~-----~~~kT~~~~~~ 311 (971)
.+.|.|.|++|++|. .++.+||||++.+-. .+.+|.+.+++
T Consensus 297 -------------------------------~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~ 345 (421)
T KOG1028|consen 297 -------------------------------AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKT 345 (421)
T ss_pred -------------------------------CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCC
Confidence 066899999999999 678899999999862 57788999999
Q ss_pred -CCccccEEEEecc--CCCcceEEEEEecC---CCCcccEEEEEEccc
Q 046822 312 -HLQWDQVFAFSKD--CIQSSAAEIFVKES---DKDDFLGRIWFDLNE 353 (971)
Q Consensus 312 -nP~wne~f~f~~~--~~~~~~l~v~v~D~---~~d~~lG~~~i~l~~ 353 (971)
||+|||+|.|.+. .++...|.|.|||. +.+++||.|.+....
T Consensus 346 ~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 346 LNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred CCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 9999999999887 45566788888887 788899999987664
No 5
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.92 E-value=6.9e-23 Score=239.80 Aligned_cols=389 Identities=16% Similarity=0.194 Sum_probs=284.3
Q ss_pred ceeEEEEEEEEeecCC-----CCCCCCeEEEEEECC-eeeeeeeecCC-CCccccEEEEeccCCCcceEEEEEecC---C
Q 046822 270 QMQYLYVRVVKARDIS-----LFGGGEIVAEVKLGN-YRGITKRVSSN-HLQWDQVFAFSKDCIQSSAAEIFVKES---D 339 (971)
Q Consensus 270 ~~~~L~V~v~~a~~L~-----~~~~~dpyV~v~~~~-~~~kT~~~~~~-nP~wne~f~f~~~~~~~~~l~v~v~D~---~ 339 (971)
..+.|.|+|.+|++|. ..+..|||+.+.+.+ ...+|++.+++ ||+|||+|...+.... +.|.+.+||. .
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~-d~L~LslyD~n~~~ 512 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFT-DPLNLSLYDFNSFK 512 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccC-CceeEEEEeccccC
Confidence 3489999999999998 478999999999875 56799999999 9999999999998664 7899999995 7
Q ss_pred CCcccEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCccccEEEEEEEEEecccchHHHHHhhccccccCCCCcccccc
Q 046822 340 KDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGTQADEAFAEAWHSKAANVHFDGLCSLKS 419 (971)
Q Consensus 340 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 419 (971)
+|+.+|++.++|..+..+...... -|.+.. .....|+|...+.+-...+... ......++.
T Consensus 513 sd~vvG~~~l~L~~L~~~~~~~ne----~~e~~~---~~k~vGrL~yDl~ffp~~e~k~-------~~~~s~e~~----- 573 (1227)
T COG5038 513 SDKVVGSTQLDLALLHQNPVKKNE----LYEFLR---NTKNVGRLTYDLRFFPVIEDKK-------ELKGSVEPL----- 573 (1227)
T ss_pred CcceeeeEEechHHhhhccccccc----eeeeec---cCccceEEEEeeeeecccCCcc-------ccccccCCc-----
Confidence 999999999999998875443322 222221 1225699999884432111100 000000011
Q ss_pred ccccCCceEEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECC-eEEEeeecCCCCCCCCCCCcccceeEEEeecCCCC
Q 046822 420 KVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGN-QFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFED 498 (971)
Q Consensus 420 k~~~~p~l~~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~-~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~ 498 (971)
.....+++.+++.++++|...... ....++++++.. .++-|+.. +.+.+|.||+++...+.+-...
T Consensus 574 ---ed~n~GI~k~tl~~~~~l~~~~~~-----~~~~~a~l~~~~keV~st~~~-----k~t~~~~wn~~~~~~v~~~~ns 640 (1227)
T COG5038 574 ---EDSNTGILKVTLREVKALDELSSK-----KDNKSAELYTNAKEVYSTGKL-----KFTNHPSWNLQYNVLVTDRKNS 640 (1227)
T ss_pred ---ccCCcceeEEEeeccccccCcccc-----ccceeEEEEecceEEecccee-----eeccCCceeeecceEeccCcce
Confidence 112356899999999999654332 333448888865 56666888 8999999999999999887777
Q ss_pred eEEEEEEeCcCCCCCceeEEEEEeccccccccccccccceeEEcccCCCCCCCcceeeeeeeeeEEEEEccCcccccCcc
Q 046822 499 YLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEA 578 (971)
Q Consensus 499 ~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~g~i~l~l~l~~~~~~~~~~ 578 (971)
.+.+.+.|.. ..+.||....+|.++..+. .....||++..++ |+|.+..++.+.+...+-+
T Consensus 641 ~~~~~~~d~~---~g~~i~~~~~~l~~li~~t---~dt~~~f~~~~~k-------------g~I~~t~~W~Pi~~~~~~~ 701 (1227)
T COG5038 641 SIKVVTFDVQ---SGKVIATEGSTLPDLIDRT---LDTFLVFPLRNPK-------------GRIFITNYWKPIYNAGGSS 701 (1227)
T ss_pred eEEEEecccc---cCceeccccccchHhhhcc---ccceEEEEcCCCc-------------ceEEEEeccceeecccccc
Confidence 8889998862 5678888888888876553 4457899998554 8899888776665332212
Q ss_pred ccccCCCcccccccCCCceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE-EEeeecccCCCCCeecceeEEEe
Q 046822 579 TLYSSDVKPTAKQLWKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-WVRTRTVVDSLSPKWNEQYTWEV 657 (971)
Q Consensus 579 ~~~~sd~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-~~rT~~~~~~~nP~Wne~~~~~v 657 (971)
+. -....++|.++|.|..|.+|... ...|++ ||||.+.+++. .+||-....++||.||+....++
T Consensus 702 s~----------~~~~~pIg~irv~v~~andl~n~---i~g~~~-dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v 767 (1227)
T COG5038 702 SK----------TVYDTPIGAIRVSVRKANDLRNE---IPGGKS-DPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPV 767 (1227)
T ss_pred ce----------eeecCccceEEEEeehhhccccc---ccCccc-ccceEEEecceeEEEEecccCccccceeeeEEEEe
Confidence 11 11237899999999999999853 457888 99999999764 69999999999999999999999
Q ss_pred eCCCcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccC----CceEee---eEeceecCCCCcccceEEEEEEE
Q 046822 658 FDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLES----DRVYTH---SYPLLMLHPSGVKKMGELHLAVR 730 (971)
Q Consensus 658 ~~~~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~----~~~~~~---~~~L~~~~~~g~~~~G~i~l~~~ 730 (971)
..+.+.|.++++|....+ .|..||.+.|+++++.. +..+.. .-+......+|.+..|++.+..+
T Consensus 768 ~sk~~r~~l~~~~~~~sg---------ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~ 838 (1227)
T COG5038 768 TSKNQRLTLECMDYEESG---------DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCR 838 (1227)
T ss_pred cCCccEEeeeeecchhcc---------ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEE
Confidence 999999999999998765 89999999999999854 211110 00001111123444688988888
Q ss_pred Eee
Q 046822 731 FSC 733 (971)
Q Consensus 731 f~~ 733 (971)
|-.
T Consensus 839 f~p 841 (1227)
T COG5038 839 FYP 841 (1227)
T ss_pred EEe
Confidence 864
No 6
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=6e-22 Score=223.44 Aligned_cols=218 Identities=22% Similarity=0.334 Sum_probs=175.7
Q ss_pred cccccccccceeEEEEEEEEeecCC---CCCCCCeEEEEEECC---eeeeeeeecCC-CCccccEEEEecc--CCCcceE
Q 046822 261 TSSTYDLVEQMQYLYVRVVKARDIS---LFGGGEIVAEVKLGN---YRGITKRVSSN-HLQWDQVFAFSKD--CIQSSAA 331 (971)
Q Consensus 261 ~~~~~d~v~~~~~L~V~v~~a~~L~---~~~~~dpyV~v~~~~---~~~kT~~~~~~-nP~wne~f~f~~~--~~~~~~l 331 (971)
+....++..+...|.|+|++|++|+ ..|.+||||++++.. .+.+|++.+++ ||.|||+|.|.+. ++....|
T Consensus 156 l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L 235 (421)
T KOG1028|consen 156 LQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVL 235 (421)
T ss_pred EEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEE
Confidence 4444555666689999999999999 467899999999983 68999999999 9999999999966 3456788
Q ss_pred EEEEecC---CCCcccEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCc-cccEEEEEEEEEecccchHHHHHhhcccc
Q 046822 332 EIFVKES---DKDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDR-SKGGEVMVSIWFGTQADEAFAEAWHSKAA 407 (971)
Q Consensus 332 ~v~v~D~---~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~~~~~d~~~~~~~~~~~~ 407 (971)
.+.|||. +++++||++.++|..+..... ...|++|....... ...|+|++++.+-
T Consensus 236 ~l~V~~~drfsr~~~iGev~~~l~~~~~~~~-----~~~w~~l~~~~~~~~~~~gel~~sL~Y~---------------- 294 (421)
T KOG1028|consen 236 HLSVYDFDRFSRHDFIGEVILPLGEVDLLST-----TLFWKDLQPSSTDSEELAGELLLSLCYL---------------- 294 (421)
T ss_pred EEEEEecCCcccccEEEEEEecCcccccccc-----ceeeeccccccCCcccccceEEEEEEee----------------
Confidence 8888876 799999999999988876432 33799998753221 1237999988432
Q ss_pred ccCCCCccccccccccCCceEEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEE--CC---eEEEeeecCCCCCCCCCCC
Q 046822 408 NVHFDGLCSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQV--GN---QFLKTRIAAPSATRSLSNP 482 (971)
Q Consensus 408 ~~~~~~~~~~~~k~~~~p~l~~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~--g~---~~~rT~~~~~~~~~~~~nP 482 (971)
|.-+.|+|.|++|++|..++.. +.+||||++.+ +. .+.||.+. ++++||
T Consensus 295 -----------------p~~g~ltv~v~kar~L~~~~~~----~~~d~~Vk~~l~~~~~~~~kkkT~~~-----~~~~np 348 (421)
T KOG1028|consen 295 -----------------PTAGRLTVVVIKARNLKSMDVG----GLSDPYVKVTLLDGDKRLSKKKTSVK-----KKTLNP 348 (421)
T ss_pred -----------------cCCCeEEEEEEEecCCCcccCC----CCCCccEEEEEecCCceeeeeeeecc-----cCCCCC
Confidence 1234799999999999999998 89999999998 22 46667777 999999
Q ss_pred cccceeEEEeecCC--CCeEEEEEEeCcCCCCCceeEEEEEeccc
Q 046822 483 CWNEDLLFVVAEPF--EDYLLISVEDHVGPGKDEIVGKVLIPVSA 525 (971)
Q Consensus 483 ~w~e~f~f~~~~~~--~~~L~v~V~d~d~~~~d~~iG~~~i~L~~ 525 (971)
.|||.|.|.+.... +-.|.|+|||+|..+..++||.|.+....
T Consensus 349 v~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 349 VFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred cccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 99999999886433 34799999999999999999999887664
No 7
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.88 E-value=4.8e-22 Score=185.88 Aligned_cols=126 Identities=69% Similarity=1.156 Sum_probs=108.5
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCccc
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNI 678 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~~ 678 (971)
.|+|+|++|+||+.+..+|+.|++ ||||++++|++++||+++.+++||+|||+|.|.+.++...|+|+|||++.++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~s-DPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~--- 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGST-DAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSH--- 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCC-CeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcc---
Confidence 489999999995444445778999 9999999999999999999999999999999999998889999999998651
Q ss_pred cCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEE
Q 046822 679 INNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLA 728 (971)
Q Consensus 679 ~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~ 728 (971)
-.....+|++||++.|+|+++..+..+..||+|...++++.++.|+|+++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~~ 126 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELECA 126 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEeC
Confidence 00112379999999999999999998999999998887778788999863
No 8
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.88 E-value=9.5e-22 Score=190.96 Aligned_cols=149 Identities=62% Similarity=1.034 Sum_probs=128.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECCeEEEeeecCCCCCCC-CCCCcccceeEEEeecCCCCeEEEEEEeC
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRS-LSNPCWNEDLLFVVAEPFEDYLLISVEDH 507 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~~~~rT~~~~~~~~~~-~~nP~w~e~f~f~~~~~~~~~L~v~V~d~ 507 (971)
+|+|+|++|++|+++|.+ |.+||||++.+|++.+||+++ .+ +.||.|||.|.|.+.++..+.|.|.|||+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~----g~sDPYV~v~l~~~~~kTk~~-----~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~ 71 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKN----RVPEVFVKAQLGNQVLRTRPS-----QTRNGNPSWNEELMFVAAEPFEDHLILSVEDR 71 (150)
T ss_pred CEEEEEEEeECCCCCCCC----CCCCeEEEEEECCEEeeeEec-----cCCCCCCcccCcEEEEecCccCCeEEEEEEEe
Confidence 489999999999999988 899999999999999999998 44 69999999999999888778999999999
Q ss_pred cCCCCCceeEEEEEeccccccccccccccceeEEcccCCCCCCCcceeeeeeeeeEEEEEccCcccccCccccccCCCcc
Q 046822 508 VGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEATLYSSDVKP 587 (971)
Q Consensus 508 d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~g~i~l~l~l~~~~~~~~~~~~~~sd~~~ 587 (971)
+..+++++||++.++|+++....+......+||+|....+. ...++..+.+|+|+|++++.+.+|+.+++++|++|+||
T Consensus 72 ~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~-~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 72 VGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGA-MEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred cCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCc-ccccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 88788999999999999987653344557899999877531 11123446689999999999999999999999999875
No 9
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.87 E-value=9.2e-22 Score=218.45 Aligned_cols=239 Identities=21% Similarity=0.360 Sum_probs=189.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSN 84 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~ 84 (971)
..|.|+|.+|+||++++..|++||||.|.++.+ ..||.++.+++.|.|.|.|+|.+...- ..|.|.|||.| ++
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F----~~l~fYv~D~d-~~- 78 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTF----RYLSFYVWDRD-LK- 78 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcce----eeEEEEEeccc-cc-
Confidence 458999999999999999999999999999976 799999999999999999999998655 79999999999 66
Q ss_pred CCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeecccccccCCCCCCCCCCccccccccccccC
Q 046822 85 SRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTTEEVVKKGGFVSSLTPSSAFSKKNKKLQQQ 164 (971)
Q Consensus 85 ~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~e~~~~~~~~~k~~~~~~~~ 164 (971)
+|+.||++.|.-.++...+ ....||.|++-...+.++|+|++++.+......
T Consensus 79 ~D~~IGKvai~re~l~~~~--~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~-------------------------- 130 (800)
T KOG2059|consen 79 RDDIIGKVAIKREDLHMYP--GKDTWFSLQPVDPDSEVQGKVHLELALTEAIQS-------------------------- 130 (800)
T ss_pred cccccceeeeeHHHHhhCC--CCccceeccccCCChhhceeEEEEEEeccccCC--------------------------
Confidence 8999999999999997644 345799999988778999999999887432210
Q ss_pred CCcccccccccCCCCCCCCCccccCccCcCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCCCCccCCCCCccc
Q 046822 165 SPVMQVQQQHFGHQDMMSKPTHQQQSQNHVKPMEPNPGELKPVVITTAPRPVIPGARGGPTFGGGGGGGVYVNGSGEFSL 244 (971)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (971)
T Consensus 131 -------------------------------------------------------------------------------- 130 (800)
T KOG2059|consen 131 -------------------------------------------------------------------------------- 130 (800)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCCcccccccccccccceeEEEEEEEEeec-CC-CCCCCCeEEEEEECC----eeeeeeeecCC-CCcccc
Q 046822 245 KETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARD-IS-LFGGGEIVAEVKLGN----YRGITKRVSSN-HLQWDQ 317 (971)
Q Consensus 245 ~~~~p~~~~~~~~~~~~~~~~d~v~~~~~L~V~v~~a~~-L~-~~~~~dpyV~v~~~~----~~~kT~~~~~~-nP~wne 317 (971)
..+...++++++ +| .++.+|||+.+...+ +..+|++++++ ||.|||
T Consensus 131 ---------------------------~~~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~E 183 (800)
T KOG2059|consen 131 ---------------------------SGLVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDE 183 (800)
T ss_pred ---------------------------CcchhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhh
Confidence 000111122223 44 567799999999986 34699999999 999999
Q ss_pred EEEEeccCC---------------CcceEEEEEecC----CCCcccEEEEEEccccCCCCCCCCCCCCeEEEeecCC-CC
Q 046822 318 VFAFSKDCI---------------QSSAAEIFVKES----DKDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRR-GD 377 (971)
Q Consensus 318 ~f~f~~~~~---------------~~~~l~v~v~D~----~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~ 377 (971)
+|.|.+... ....|.|.+|+. ..++|+|++.+++........++ .||.|.... |.
T Consensus 184 v~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~-----~W~~Lqp~~~g~ 258 (800)
T KOG2059|consen 184 VFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPA-----AWYYLQPRPNGE 258 (800)
T ss_pred heeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCcc-----ceEEEecCCCcc
Confidence 999997754 234688888985 56999999999998887544433 899997643 21
Q ss_pred c----cccEEEEEEEEE
Q 046822 378 R----SKGGEVMVSIWF 390 (971)
Q Consensus 378 ~----~~~G~i~l~~~~ 390 (971)
+ ...|.+.+.+.+
T Consensus 259 ~~~~~~~lGslrl~v~y 275 (800)
T KOG2059|consen 259 KSSDGGDLGSLRLNVTY 275 (800)
T ss_pred cCCCCCCccceeeeEEe
Confidence 1 256778877754
No 10
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.85 E-value=8.8e-21 Score=176.25 Aligned_cols=119 Identities=21% Similarity=0.370 Sum_probs=103.4
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccC-CCCCeecceeEEEeeCCCcEEEEEEEeCCCCC
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVD-SLSPKWNEQYTWEVFDPCTVITVGVFDNCSLD 675 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~-~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~ 675 (971)
.|.|+|+|++|++|+.. + .|++ ||||++.+|++++||+++.+ +.||+|||.|.|.+.+....|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~---~-~g~s-DPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNY---G-LTRM-DPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcC---C-CCCC-CceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc
Confidence 38999999999988653 3 6899 99999999999999999976 79999999999999877678999999999886
Q ss_pred ccccCCCCCCCceeEEEEEEcc-cccCCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 676 KNIINNSGGRDSRIGKVRIRLS-TLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 676 ~~~~~~~~~~d~~iG~~~i~l~-~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
+|++||++.|+|. .+..++..+.||+|.... |.++.|+|+|.+.|
T Consensus 76 ---------~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~--~~~~~g~i~l~l~y 121 (121)
T cd04016 76 ---------MDERIAWTHITIPESVFNGETLDDWYSLSGKQ--GEDKEGMINLVFSY 121 (121)
T ss_pred ---------CCceEEEEEEECchhccCCCCccccEeCcCcc--CCCCceEEEEEEeC
Confidence 8999999999996 577787789999998533 44567999999975
No 11
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.85 E-value=6.5e-21 Score=211.74 Aligned_cols=248 Identities=20% Similarity=0.301 Sum_probs=193.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECC-eEEEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEEEEeC
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGN-QFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDH 507 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~-~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d~ 507 (971)
-|+|.|.||+||+..+.. |..||||.|.+.+ .++||.++ .+++.|.|.|+|.|.++-.+. .|.|.|||.
T Consensus 6 sl~vki~E~knL~~~~~~----g~~D~yC~v~lD~E~v~RT~tv-----~ksL~PF~gEe~~~~iP~~F~-~l~fYv~D~ 75 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPS----GMRDCYCTVNLDQEEVCRTATV-----EKSLCPFFGEEFYFEIPRTFR-YLSFYVWDR 75 (800)
T ss_pred ceeEEEeecccCCCCCCC----CCcCcceEEeecchhhhhhhhh-----hhhcCCccccceEEecCccee-eEEEEEecc
Confidence 479999999999999888 8999999999975 79999999 899999999999999987666 799999999
Q ss_pred cCCCCCceeEEEEEeccccccccccccccceeEEcccCCCCCCCcceeeeeeeeeEEEEEccCcccccCccccccCCCcc
Q 046822 508 VGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEATLYSSDVKP 587 (971)
Q Consensus 508 d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~g~i~l~l~l~~~~~~~~~~~~~~sd~~~ 587 (971)
| .+.|+.||.+.|.=++|.... ..+.||+|..... +....|+|++++.+.....
T Consensus 76 d-~~~D~~IGKvai~re~l~~~~----~~d~W~~L~~VD~-------dsEVQG~v~l~l~~~e~~~-------------- 129 (800)
T KOG2059|consen 76 D-LKRDDIIGKVAIKREDLHMYP----GKDTWFSLQPVDP-------DSEVQGKVHLELALTEAIQ-------------- 129 (800)
T ss_pred c-cccccccceeeeeHHHHhhCC----CCccceeccccCC-------ChhhceeEEEEEEeccccC--------------
Confidence 9 899999999999988887653 4589999987652 3445799999987643321
Q ss_pred cccccCCCceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEE----EeeecccCCCCCeecceeEEEeeCC---
Q 046822 588 TAKQLWKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKW----VRTRTVVDSLSPKWNEQYTWEVFDP--- 660 (971)
Q Consensus 588 ~~~~~~~~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~----~rT~~~~~~~nP~Wne~~~~~v~~~--- 660 (971)
..-+..+++.++++.+.. +|.+ ||||++...+.+ .+|++.++|.+|.|+|.|.|.+.-.
T Consensus 130 ---------~~~~~c~~L~~r~~~P~~----~~~~-dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~ 195 (800)
T KOG2059|consen 130 ---------SSGLVCHVLKTRQGLPII----NGQC-DPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESY 195 (800)
T ss_pred ---------CCcchhhhhhhcccCcee----CCCC-CcceEEeecccchhhccccceeeeccCcchhhheeeeecccccc
Confidence 011223334444554432 4557 999999985444 5999999999999999999988643
Q ss_pred -------------CcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCc----ccce
Q 046822 661 -------------CTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGV----KKMG 723 (971)
Q Consensus 661 -------------~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~----~~~G 723 (971)
...|.+++||+.... .+++|+|++++++..+........||-|.....+.. ...|
T Consensus 196 s~ks~~~~~~e~~~l~irv~lW~~~~~~--------~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lG 267 (800)
T KOG2059|consen 196 SKKSLFMPEEEDDMLEIRVDLWNDLNLV--------INDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLG 267 (800)
T ss_pred ccchhcCcccCCceeeEEEeeccchhhh--------hhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCcc
Confidence 238999999954332 369999999999999875556689999986433111 1258
Q ss_pred EEEEEEEEeec
Q 046822 724 ELHLAVRFSCA 734 (971)
Q Consensus 724 ~i~l~~~f~~~ 734 (971)
.+++.+.|+..
T Consensus 268 slrl~v~y~~D 278 (800)
T KOG2059|consen 268 SLRLNVTYTED 278 (800)
T ss_pred ceeeeEEeeec
Confidence 88999998854
No 12
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.84 E-value=1.8e-20 Score=178.29 Aligned_cols=126 Identities=55% Similarity=0.890 Sum_probs=110.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSR 86 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d 86 (971)
+|+|+|++|++|++++..|.+||||++.++++.++|++++++.||.|||.|.|.+..+..+....|.|.|||++.++.++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 48999999999999998899999999999999999999999999999999999998655444568999999999874368
Q ss_pred ceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEee
Q 046822 87 NFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVS 133 (971)
Q Consensus 87 ~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 133 (971)
+|||++.++++++...+ ....+||+|++++..++.+|+|.|++++.
T Consensus 81 ~~lG~v~i~l~~l~~~~-~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVPPS-EAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCCCC-CccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 99999999999997433 34569999998876677899999999875
No 13
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.83 E-value=6.7e-20 Score=170.33 Aligned_cols=119 Identities=18% Similarity=0.317 Sum_probs=101.1
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccC-CCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCC
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYK-DLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSS 83 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~ 83 (971)
.|.|+|+|++|++|+..+ .|++||||++.+++++++|+++.+ +.||+|||+|.|.+.... ..|.|+|||++.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~----~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGV----DSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCC----cEEEEEEEeCCCCc
Confidence 378999999999988776 799999999999999999999875 899999999999987543 67999999999987
Q ss_pred CCCceeEEEEEeCcc-ccccCCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 84 NSRNFLGKVRAPCSQ-LCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 84 ~~d~~lG~~~i~l~~-l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
+|++||++.+++.. +. .+ +....||+|.+.... +..|+|+|.+.|
T Consensus 76 -~dd~iG~~~i~l~~~~~-~g-~~~~~W~~L~~~~~~-~~~g~i~l~l~y 121 (121)
T cd04016 76 -MDERIAWTHITIPESVF-NG-ETLDDWYSLSGKQGE-DKEGMINLVFSY 121 (121)
T ss_pred -CCceEEEEEEECchhcc-CC-CCccccEeCcCccCC-CCceEEEEEEeC
Confidence 79999999999974 44 23 335799999875432 467999999875
No 14
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.83 E-value=1.7e-20 Score=176.43 Aligned_cols=119 Identities=29% Similarity=0.473 Sum_probs=102.1
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCC
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSL 674 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~ 674 (971)
..+|.|+|+|.+|.||...| ..|+| ||||++++|+++.||+++++++||+|||.|+|.|.|++.+|+++|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD---~~~sS-DPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRD---FLGSS-DPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeec---cccCC-CCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCC
Confidence 35799999999999998765 36899 999999999999999999999999999999999999999999999999988
Q ss_pred CccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEE
Q 046822 675 DKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVR 730 (971)
Q Consensus 675 ~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 730 (971)
+ +||+||.++|+|..+.... ..+| |....++|... |+|.++.+
T Consensus 79 s---------~dD~mG~A~I~l~p~~~~~--~~~~-l~~~~~~gt~~-~~v~~s~d 121 (168)
T KOG1030|consen 79 S---------SDDFMGEATIPLKPLLEAQ--KMDY-LKLELLTGTAI-GKVLLSRD 121 (168)
T ss_pred C---------cccccceeeeccHHHHHHh--hhhc-cccccCCCcEe-eEEEeccc
Confidence 7 9999999999999987655 3555 55555555444 76766554
No 15
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.82 E-value=8.2e-20 Score=173.52 Aligned_cols=122 Identities=25% Similarity=0.490 Sum_probs=103.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCC--CCCCcceEEEEEEeCCCCCCC
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDI--AELPYKHIEVNVFNERRSSNS 85 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~--~~l~~~~L~i~V~d~~~~~~~ 85 (971)
++|+|++|+||+.++..|.+||||+|.+++++++|+++++++||+|||+|.|.+... ++.....|.|.|||++.++ +
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~-~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG-L 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccC-C
Confidence 579999999999999999999999999999999999999999999999999998762 1233478999999999886 7
Q ss_pred CceeEEEEEeCccccccCCcccceEEEeEeC-CCCCeeeeEEEEEE
Q 046822 86 RNFLGKVRAPCSQLCKNEGEATAQLYTLEKR-SLFSHIRGEISLKL 130 (971)
Q Consensus 86 d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~-~~~~~~~G~i~l~~ 130 (971)
|++||++.|+++++....+....+||+|.++ +...+.+|+|+|++
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 9999999999999964334445699999864 33345789999986
No 16
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.81 E-value=1.9e-19 Score=170.96 Aligned_cols=118 Identities=25% Similarity=0.390 Sum_probs=100.9
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeC------CCcEEEEEEEeCCC
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFD------PCTVITVGVFDNCS 673 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~------~~~~l~i~V~D~~~ 673 (971)
++|+|++|+||++++ ..|.+ ||||++++++..+||+++++++||+|||.|.|.+.+ ....|.|+|||++.
T Consensus 1 ~~V~V~~A~~L~~~d---~~g~~-dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~ 76 (126)
T cd08682 1 VQVTVLQARGLLCKG---KSGTN-DAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL 76 (126)
T ss_pred CEEEEEECcCCcCCC---CCcCC-CceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc
Confidence 579999999998764 47888 999999999999999999999999999999999987 35699999999997
Q ss_pred CCccccCCCCCCCceeEEEEEEccccc--CCceEeeeEeceecCCCCcccceEEEEEEE
Q 046822 674 LDKNIINNSGGRDSRIGKVRIRLSTLE--SDRVYTHSYPLLMLHPSGVKKMGELHLAVR 730 (971)
Q Consensus 674 ~~~~~~~~~~~~d~~iG~~~i~l~~l~--~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 730 (971)
++ +|++||++.|+|+++. .+.....||+|........+..|+|+|.++
T Consensus 77 ~~---------~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 77 LG---------LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred cC---------CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 75 8999999999999987 566678999998644333344699999873
No 17
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.80 E-value=6.8e-19 Score=172.91 Aligned_cols=125 Identities=25% Similarity=0.317 Sum_probs=109.0
Q ss_pred eeEEEEEEEeeeCCCCCCcc---------------------------CCCCcccCcEEEEEECCEE-EeeecccCCCCCe
Q 046822 597 IGVLEMGILGATGLMPMKFK---------------------------EGKGGSVDAYCVAKYGQKW-VRTRTVVDSLSPK 648 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~---------------------------~~~g~s~dpy~~~~~g~~~-~rT~~~~~~~nP~ 648 (971)
-|.|.|+|++|++|+.||.. .+.|++ ||||++.+++.. .||+++.++.||+
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s-DPYv~V~l~~~~~~rT~v~~~~~nP~ 84 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITS-DPYATVDLAGARVARTRVIENSENPV 84 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCc-CeEEEEEECCeEeeEEEEeCCCCCCc
Confidence 48999999999999998731 356888 999999998755 6999999999999
Q ss_pred ecceeEEEeeCCCcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEE
Q 046822 649 WNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLA 728 (971)
Q Consensus 649 Wne~~~~~v~~~~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~ 728 (971)
|||.|.|.+.++.+.|+|+|||+|.+ .+++||++.|+++++..+...+.||+|.....++.+..|+|++.
T Consensus 85 WnE~F~~~~~~~~~~l~~~V~d~d~~----------~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~ 154 (158)
T cd04015 85 WNESFHIYCAHYASHVEFTVKDNDVV----------GAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVS 154 (158)
T ss_pred cceEEEEEccCCCCEEEEEEEeCCCc----------CCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEE
Confidence 99999999988888999999999865 35899999999999988888899999987655555567999999
Q ss_pred EEEe
Q 046822 729 VRFS 732 (971)
Q Consensus 729 ~~f~ 732 (971)
++|+
T Consensus 155 ~~f~ 158 (158)
T cd04015 155 LQFT 158 (158)
T ss_pred EEEC
Confidence 9984
No 18
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.79 E-value=1.2e-18 Score=164.25 Aligned_cols=119 Identities=25% Similarity=0.367 Sum_probs=105.2
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-EEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCcc
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-KWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKN 677 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~ 677 (971)
.|+|+|++|+||+..+. .|.+ ||||++.+++ ..++|+++.+++||.|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~L~v~v~~a~~L~~~d~---~g~~-Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~-- 74 (121)
T cd04042 1 QLDIHLKEGRNLAARDR---GGTS-DPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL-- 74 (121)
T ss_pred CeEEEEEEeeCCCCcCC---CCCC-CCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC--
Confidence 37899999999998653 6888 9999999987 578999999999999999999999888889999999999775
Q ss_pred ccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 678 IINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 678 ~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
+|++||++.++|+++..+.....|++|.+.. +.+..|+|+|+++|+
T Consensus 75 -------~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~G~l~l~~~~~ 120 (121)
T cd04042 75 -------TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN--SDEDLGYISLVVTLT 120 (121)
T ss_pred -------CCcceEEEEEEHHHcCCCCCeEEEEECCCCC--CccCceEEEEEEEEC
Confidence 8999999999999999888888999997543 234579999999986
No 19
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=9.1e-19 Score=164.34 Aligned_cols=118 Identities=59% Similarity=1.053 Sum_probs=104.8
Q ss_pred EEEEEEEEeecCCCCCCCCeEEEEEECCeeeeeeeecCC-CCccccEEEEeccCCCcceEEEEEecC--CCCcccEEEEE
Q 046822 273 YLYVRVVKARDISLFGGGEIVAEVKLGNYRGITKRVSSN-HLQWDQVFAFSKDCIQSSAAEIFVKES--DKDDFLGRIWF 349 (971)
Q Consensus 273 ~L~V~v~~a~~L~~~~~~dpyV~v~~~~~~~kT~~~~~~-nP~wne~f~f~~~~~~~~~l~v~v~D~--~~d~~lG~~~i 349 (971)
+|.|+|++|+||+.. .+||||++.++++..+|++++++ ||+|||+|.|.+..+....|.+.|||. .++++||++.+
T Consensus 1 ~L~V~Vi~a~~L~~~-~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i 79 (121)
T cd08378 1 YLYVRVVKARGLPAN-SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCF 79 (121)
T ss_pred CEEEEEEEecCCCcc-cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEE
Confidence 589999999999933 89999999999999999999999 999999999998877778899999998 57999999999
Q ss_pred EccccCCCCCCCCCCCCeEEEeecCCCCccccEEEEEEEEEec
Q 046822 350 DLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGT 392 (971)
Q Consensus 350 ~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 392 (971)
+|+++..+...++...++||+|++..+ ....|+|+|++|||+
T Consensus 80 ~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~~~ 121 (121)
T cd08378 80 DLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWFGT 121 (121)
T ss_pred EhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEecC
Confidence 999998766555666789999998876 447899999999984
No 20
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.79 E-value=5.2e-19 Score=166.51 Aligned_cols=119 Identities=35% Similarity=0.501 Sum_probs=100.9
Q ss_pred CCCCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 1 MGDGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 1 ~~~~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
|.+--|.|+|+|++|.||..+|..++|||||++.+++|+.+|+++++++||+|||.|.|.+.++. ..|.+.|||+|
T Consensus 1 m~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~----~~lkv~VyD~D 76 (168)
T KOG1030|consen 1 MEMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPN----TPLKVTVYDKD 76 (168)
T ss_pred CCccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCC----ceEEEEEEeCC
Confidence 45667999999999999999998899999999999999999999999999999999999999987 89999999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEE
Q 046822 81 RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLK 129 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~ 129 (971)
.++ +|||||.+.|++..+.... ..|+ |..........|.+.++
T Consensus 77 ~fs-~dD~mG~A~I~l~p~~~~~----~~~~-l~~~~~~gt~~~~v~~s 119 (168)
T KOG1030|consen 77 TFS-SDDFMGEATIPLKPLLEAQ----KMDY-LKLELLTGTAIGKVLLS 119 (168)
T ss_pred CCC-cccccceeeeccHHHHHHh----hhhc-cccccCCCcEeeEEEec
Confidence 998 8999999999999996432 1345 44333333455655544
No 21
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=1.6e-18 Score=162.23 Aligned_cols=116 Identities=28% Similarity=0.421 Sum_probs=98.5
Q ss_pred EEEEEEEEeeC---CCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCC
Q 046822 7 KLVVEVIAAHN---LMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSS 83 (971)
Q Consensus 7 ~L~V~V~~a~~---L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~ 83 (971)
.|.|+|++|+| |..+|..|++||||++++++++.||+++++++||+|||+|.|.+.++. ..|.|+|||++.++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~----~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPC----TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCC----CEEEEEEEECCCcc
Confidence 38999999999 899999999999999999999999999999999999999999997655 68999999998862
Q ss_pred -----CCCceeEEEEEeCccccccCCcccceEEEeEeCCCC-CeeeeEEEE
Q 046822 84 -----NSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLF-SHIRGEISL 128 (971)
Q Consensus 84 -----~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~-~~~~G~i~l 128 (971)
++|++||++.++++++.. +.....||+|...... .+..|+|.+
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLED--DRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccC--CCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 369999999999999864 3344689999875422 235677754
No 22
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.78 E-value=2.8e-18 Score=161.01 Aligned_cols=119 Identities=29% Similarity=0.412 Sum_probs=102.6
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE-EEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCccc
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-WVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNI 678 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~~ 678 (971)
|.|.|++|+||++++. ..|.+ ||||.+.++++ ..+|+++++|+||.|||.|.|++.+....|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~~--~~g~s-DpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~--- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSG--PNKMR-DCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR--- 75 (121)
T ss_pred eEEEEEEccCCCCCCC--CCCCc-CcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC---
Confidence 6799999999998642 25788 99999999865 58999999999999999999999877679999999999775
Q ss_pred cCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 679 INNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 679 ~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
+|++||++.++|+++..+...+.||+|......+. ..|+|+|+++|
T Consensus 76 ------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~ 121 (121)
T cd08401 76 ------RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE-VQGKVHLELRL 121 (121)
T ss_pred ------CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc-ccEEEEEEEEC
Confidence 89999999999999987777789999986544333 36999999875
No 23
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=2.7e-18 Score=166.77 Aligned_cols=125 Identities=25% Similarity=0.407 Sum_probs=106.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccC-CCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYK-DLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNS 85 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~ 85 (971)
.|.|+|++|+||+++|..|.+||||++.++++.++|++..+ ++||.|||+|.|.+.++. ...|.|.|||++..+ +
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~---~~~l~v~V~d~~~~~-~ 76 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF---EDHLILSVEDRVGPN-K 76 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCcc---CCeEEEEEEEecCCC-C
Confidence 38999999999999999999999999999999999999876 699999999999987644 268999999999876 7
Q ss_pred CceeEEEEEeCcccccc--CCcccceEEEeEeCCC------CCeeeeEEEEEEEeeec
Q 046822 86 RNFLGKVRAPCSQLCKN--EGEATAQLYTLEKRSL------FSHIRGEISLKLFVSTT 135 (971)
Q Consensus 86 d~~lG~~~i~l~~l~~~--~~~~~~~w~~L~~~~~------~~~~~G~i~l~~~~~~~ 135 (971)
|++||++.|+|+++... ......+||+|++.+. ..+.+|+|+|++.+...
T Consensus 77 dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 77 DEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred CCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 99999999999998643 2234579999987642 23567999999999743
No 24
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.77 E-value=7.4e-18 Score=159.63 Aligned_cols=120 Identities=25% Similarity=0.458 Sum_probs=101.4
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE-EEeeecccCCCCCeecceeEEEeeCCC-cEEEEEEEeCCCC
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-WVRTRTVVDSLSPKWNEQYTWEVFDPC-TVITVGVFDNCSL 674 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-~~rT~~~~~~~nP~Wne~~~~~v~~~~-~~l~i~V~D~~~~ 674 (971)
+..|+|+|++|+||++ .+.+ ||||++.+++. ..||++ +++.||.|||.|.|++..+. ..++|.|||++.+
T Consensus 3 ~~~L~V~Vi~A~~L~~------~~~~-DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~ 74 (126)
T cd08400 3 VRSLQLNVLEAHKLPV------KHVP-HPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKR 74 (126)
T ss_pred eeEEEEEEEEeeCCCC------CCCC-CeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCC
Confidence 4579999999999986 3467 99999999874 478987 56899999999999976654 4799999999876
Q ss_pred CccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEee
Q 046822 675 DKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSC 733 (971)
Q Consensus 675 ~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 733 (971)
+ +|++||++.|+|+++..+...+.||+|......+.+..|+|+|+++|..
T Consensus 75 ~---------~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 75 S---------KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred C---------CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 5 8999999999999999888889999998754434455799999999973
No 25
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.77 E-value=5.4e-18 Score=159.11 Aligned_cols=118 Identities=21% Similarity=0.412 Sum_probs=101.4
Q ss_pred EEEEEEEeeCCCCCC-CCCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCC
Q 046822 8 LVVEVIAAHNLMPKD-GEGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNS 85 (971)
Q Consensus 8 L~V~V~~a~~L~~~d-~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~ 85 (971)
|.|+|++|+||++++ ..|.+||||.|.++++ .++|+++++|+||.|||+|.|.+.+.. ..|.|.|||++.++ +
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~----~~l~~~v~d~~~~~-~ 76 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTF----RHLSFYIYDRDVLR-R 76 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCC----CEEEEEEEECCCCC-C
Confidence 789999999999974 4678999999999875 689999999999999999999998543 68999999999986 7
Q ss_pred CceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 86 RNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 86 d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
|++||++.++++++... .....||+|++....++..|+|++++.+
T Consensus 77 ~~~iG~~~i~l~~l~~~--~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 77 DSVIGKVAIKKEDLHKY--YGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CceEEEEEEEHHHccCC--CCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 99999999999998652 2346899999876556678999998753
No 26
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.77 E-value=7.5e-18 Score=161.25 Aligned_cols=120 Identities=29% Similarity=0.465 Sum_probs=101.0
Q ss_pred CCceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCC-cEEEEEEEeCC
Q 046822 594 KPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPC-TVITVGVFDNC 672 (971)
Q Consensus 594 ~~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~-~~l~i~V~D~~ 672 (971)
+..+|.|+|+|++|+||+.++ ..|.+ ||||++.++++.+||+++++++||.|||.|.|.+.++. ..|.|+|||++
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d---~~g~~-DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d 86 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCN---SNGKS-DPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD 86 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCC---CCCCc-CcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC
Confidence 467899999999999999865 47888 99999999999999999999999999999999998755 58999999999
Q ss_pred CCCccccCCCCCCCceeEEEEEEcccccC-----CceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 673 SLDKNIINNSGGRDSRIGKVRIRLSTLES-----DRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 673 ~~~~~~~~~~~~~d~~iG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
.++ +|++||++.++|.++.. ......|.+|. +. ..|+|+|+++|.
T Consensus 87 ~~~---------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~~-~~g~i~l~~~~~ 136 (136)
T cd08375 87 FFS---------PDDFLGRTEIRVADILKETKESKGPITKRLLLH-----EV-PTGEVVVKLDLQ 136 (136)
T ss_pred CCC---------CCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----cc-cceeEEEEEEeC
Confidence 765 89999999999999865 22234455542 32 359999999873
No 27
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.76 E-value=6.3e-18 Score=162.49 Aligned_cols=121 Identities=32% Similarity=0.491 Sum_probs=105.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe-------EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-------ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
.|+|+|++|+||+.++..|.+||||++.+.++ .++|+++++|.||.|||+|.|.+.... ..|.|+|||+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~----~~l~~~v~d~ 76 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPRE----HRLLFEVFDE 76 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCC----CEEEEEEEEC
Confidence 48999999999999998899999999999765 579999999999999999999987533 6899999999
Q ss_pred CCCCCCCceeEEEEEeCccccccCC----cccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 80 RRSSNSRNFLGKVRAPCSQLCKNEG----EATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~----~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
+.++ ++++||++.+++.++..... .....||+|+++...++.+|+|++++.|
T Consensus 77 ~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 77 NRLT-RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCC-CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 9986 79999999999999865322 2356899999876667789999999987
No 28
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.76 E-value=7.2e-18 Score=160.42 Aligned_cols=121 Identities=31% Similarity=0.490 Sum_probs=102.4
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCC----cEEEEEEEeCCCC
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPC----TVITVGVFDNCSL 674 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~----~~l~i~V~D~~~~ 674 (971)
.|.|+|++|+||++.+ ..|.+ ||||++.++++.+||+++.++.||.|||.|.|.+.++. ..|.|+|||++.+
T Consensus 1 ~L~V~vi~A~~L~~~d---~~g~~-dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~ 76 (127)
T cd04022 1 KLVVEVVDAQDLMPKD---GQGSS-SAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRS 76 (127)
T ss_pred CeEEEEEEeeCCCCCC---CCCCc-CcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCC
Confidence 3889999999999865 36788 99999999999999999999999999999999998643 4799999999865
Q ss_pred CccccCCCCCCCceeEEEEEEccccc-CCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 675 DKNIINNSGGRDSRIGKVRIRLSTLE-SDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 675 ~~~~~~~~~~~d~~iG~~~i~l~~l~-~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
+ .+|++||++.++|+++. .+.....||+|......+ +.+|+|+|++.||
T Consensus 77 ~--------~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~~ 126 (127)
T cd04022 77 G--------RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFS-RVRGEIGLKVYIT 126 (127)
T ss_pred c--------CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCC-CccEEEEEEEEEc
Confidence 3 26899999999999987 566668999998643333 3469999999886
No 29
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.76 E-value=5.8e-18 Score=158.90 Aligned_cols=116 Identities=27% Similarity=0.427 Sum_probs=100.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCCc
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSRN 87 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d~ 87 (971)
|.|+|++|+||+.+ .+||||++.++++..+|+++++++||.|||+|.|.+.... ...|.|+|||++.. +++
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~---~~~L~~~v~d~d~~--~~~ 72 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQ---GSTLEVSVWDKDKA--KDD 72 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCc---CCEEEEEEEeCCCC--cCc
Confidence 89999999999887 7999999999999999999999999999999999986543 37899999999986 689
Q ss_pred eeEEEEEeCccccccC---CcccceEEEeEeCCCCCeeeeEEEEEEEee
Q 046822 88 FLGKVRAPCSQLCKNE---GEATAQLYTLEKRSLFSHIRGEISLKLFVS 133 (971)
Q Consensus 88 ~lG~~~i~l~~l~~~~---~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 133 (971)
+||++.++++++.... .....+||+|+.... ++.+|+|+|.+++.
T Consensus 73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~~ 120 (121)
T cd08378 73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWFG 120 (121)
T ss_pred eeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEec
Confidence 9999999999985432 233468999988755 67899999999873
No 30
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.76 E-value=1.1e-17 Score=156.71 Aligned_cols=114 Identities=25% Similarity=0.458 Sum_probs=101.8
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCC-CcEEEEEEEeCCCCCcc
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDP-CTVITVGVFDNCSLDKN 677 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~-~~~l~i~V~D~~~~~~~ 677 (971)
+|+|+|++|+||+..+. .|.+ ||||++.++++.++|+++.+++||.|||.|.|.+.++ ...|.|+|||++.++
T Consensus 1 ~~~V~v~~a~~L~~~~~---~~~~-dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~-- 74 (116)
T cd08376 1 VVTIVLVEGKNLPPMDD---NGLS-DPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK-- 74 (116)
T ss_pred CEEEEEEEEECCCCCCC---CCCC-CcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC--
Confidence 37899999999998654 6788 9999999999999999999999999999999999876 569999999999765
Q ss_pred ccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 678 IINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 678 ~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
+|++||++.++|+++..+.....||+|.. ..|+|++++.++
T Consensus 75 -------~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~~ 115 (116)
T cd08376 75 -------KDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTLT 115 (116)
T ss_pred -------CCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEec
Confidence 89999999999999988888899999972 149999998875
No 31
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.76 E-value=1e-17 Score=157.94 Aligned_cols=119 Identities=27% Similarity=0.510 Sum_probs=103.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNS 85 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~ 85 (971)
.|+|+|++|++|+.+|..|.+||||++.+++ +.++|+++.++.||.|||+|.|.+.... ..|.|+|||++.++ +
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~----~~l~~~v~D~d~~~-~ 75 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVT----QPLYIKVFDYDRGL-T 75 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCC----CeEEEEEEeCCCCC-C
Confidence 3899999999999999999999999999987 5789999999999999999999987543 78999999999986 7
Q ss_pred CceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEee
Q 046822 86 RNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVS 133 (971)
Q Consensus 86 d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 133 (971)
|++||++.++++++... .....|++|.+++. .+..|+|.+.+.+.
T Consensus 76 ~~~iG~~~~~l~~l~~~--~~~~~~~~L~~~~~-~~~~G~l~l~~~~~ 120 (121)
T cd04042 76 DDFMGSAFVDLSTLELN--KPTEVKLKLEDPNS-DEDLGYISLVVTLT 120 (121)
T ss_pred CcceEEEEEEHHHcCCC--CCeEEEEECCCCCC-ccCceEEEEEEEEC
Confidence 99999999999998642 23457999976543 35789999999875
No 32
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.76 E-value=1.4e-17 Score=156.88 Aligned_cols=118 Identities=26% Similarity=0.468 Sum_probs=103.0
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCcc
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKN 677 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~ 677 (971)
|.|+|+|++|+||+.++. .|.+ ||||++.+++..++|++++++.||.|||.|.|++.+....|.|+|||++.++
T Consensus 1 g~l~v~v~~a~~L~~~~~---~~~~-dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~-- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAADI---GGKS-DPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK-- 74 (119)
T ss_pred CEEEEEEEeeeCCCCCCC---CCCC-CcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC--
Confidence 789999999999998654 6788 9999999999899999999999999999999999887789999999998654
Q ss_pred ccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 678 IINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 678 ~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
++++||++.+++.++..+. ..||+|......+. ..|+|+|+++|
T Consensus 75 -------~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~-~~G~i~l~~~~ 118 (119)
T cd08377 75 -------KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRTR-AKGSILLEMDV 118 (119)
T ss_pred -------CCceeeEEEEEHHHCCCCC--ceEEECcccCCCCc-eeeEEEEEEEe
Confidence 8999999999999998766 68999985543333 45999999986
No 33
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.75 E-value=5.8e-18 Score=156.94 Aligned_cols=106 Identities=22% Similarity=0.296 Sum_probs=90.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-------eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-------QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
+|+|+|++|+||+.++ .|.+||||+|++.+ ++++|+++.+|+||+|||+|.|.+...+.+....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999988 59999999999842 357899999999999999999999764445567899999999
Q ss_pred CCCCCCCceeEEEEEeCccccccCCcccceEEEeEeC
Q 046822 80 RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~ 116 (971)
+..+ ++++||++.+++.++...+ ....|++|+++
T Consensus 80 d~~~-~dd~IG~~~l~l~~~~~~~--~~~~w~~L~~~ 113 (120)
T cd08395 80 CFAR-DDRLVGVTVLQLRDIAQAG--SCACWLPLGRR 113 (120)
T ss_pred cccC-CCCEEEEEEEEHHHCcCCC--cEEEEEECcCc
Confidence 8754 7999999999999997543 34589999875
No 34
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.75 E-value=7.1e-18 Score=158.44 Aligned_cols=116 Identities=27% Similarity=0.475 Sum_probs=99.1
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccC-CCCCeecceeEEEeeCC-CcEEEEEEEeCCCCC
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVD-SLSPKWNEQYTWEVFDP-CTVITVGVFDNCSLD 675 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~-~~nP~Wne~~~~~v~~~-~~~l~i~V~D~~~~~ 675 (971)
|.|+|+|++|+||+..+ ..|++ ||||++.+++...+|+++.+ ++||.|||.|.|.+..+ ...|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~~---~~~~~-dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKR---KLDKQ-DPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR- 75 (118)
T ss_pred CEEEEEEEEccCCCCCC---cCCCC-CceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC-
Confidence 78999999999999864 47888 99999999999999999855 79999999999999874 46899999999743
Q ss_pred ccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 676 KNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 676 ~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
.|++||++.++++++..+.....||+|... | +..|+|+|++.|
T Consensus 76 ---------~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~---~-~~~G~i~l~l~f 118 (118)
T cd08681 76 ---------KPDLIGDTEVDLSPALKEGEFDDWYELTLK---G-RYAGEVYLELTF 118 (118)
T ss_pred ---------CCcceEEEEEecHHHhhcCCCCCcEEeccC---C-cEeeEEEEEEEC
Confidence 389999999999998766666899999742 3 356999999976
No 35
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.75 E-value=8.9e-18 Score=154.49 Aligned_cols=100 Identities=20% Similarity=0.308 Sum_probs=89.3
Q ss_pred eeEEEEEEEEeecCCCCCCCCeEEEEEECCeeeeeeeecCCCCccccEEEEeccCCCcceEEEEEecC--CCCcccEEEE
Q 046822 271 MQYLYVRVVKARDISLFGGGEIVAEVKLGNYRGITKRVSSNHLQWDQVFAFSKDCIQSSAAEIFVKES--DKDDFLGRIW 348 (971)
Q Consensus 271 ~~~L~V~v~~a~~L~~~~~~dpyV~v~~~~~~~kT~~~~~~nP~wne~f~f~~~~~~~~~l~v~v~D~--~~d~~lG~~~ 348 (971)
|+.|.|+|++|++|+..+..||||+|++++++.+|++.+++||.|||.|.|.+.+.+.. |.|+|||+ ..||+||++.
T Consensus 1 m~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~~nP~WnE~F~F~~~~~~~~-L~v~V~dkd~~~DD~lG~v~ 79 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRGSQPCWEQDFMFEINRLDLG-LVIELWNKGLIWDTLVGTVW 79 (127)
T ss_pred CceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCCCCCceeeEEEEEEcCCCCE-EEEEEEeCCCcCCCceEEEE
Confidence 57899999999999966678999999999999999999766999999999999887644 99999998 6999999999
Q ss_pred EEccccCCCCCCCCCCCCeEEEeecC
Q 046822 349 FDLNEVPRRVPPDSQLAPQWYRMEDR 374 (971)
Q Consensus 349 i~l~~l~~~~~~~~~~~~~w~~L~~~ 374 (971)
|+|.++..+ +.+++++||+|+..
T Consensus 80 i~L~~v~~~---~~~~~~~Wy~L~~~ 102 (127)
T cd08394 80 IPLSTIRQS---NEEGPGEWLTLDSE 102 (127)
T ss_pred EEhHHcccC---CCCCCCccEecChH
Confidence 999999876 45788999999854
No 36
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.75 E-value=1.7e-17 Score=157.48 Aligned_cols=119 Identities=20% Similarity=0.334 Sum_probs=101.5
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC--CEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCcc
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG--QKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKN 677 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g--~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~ 677 (971)
|.|+|++|+||+. ..|.+ ||||++.++ .+.+||+++.+++||.|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~~g~~-dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~-- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----AAGSS-NPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS-- 72 (126)
T ss_pred CEEEEEEecCCCC-----CCCCc-CCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC--
Confidence 5799999999986 26788 999999997 4678999999999999999999999766679999999999664
Q ss_pred ccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEee
Q 046822 678 IINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSC 733 (971)
Q Consensus 678 ~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 733 (971)
+|++||++.++++++..+.....||+|......+.+..|+|++++.|..
T Consensus 73 -------~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 73 -------DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred -------CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 8999999999999998777678899997543223345799999999974
No 37
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.75 E-value=1.3e-17 Score=159.19 Aligned_cols=123 Identities=24% Similarity=0.380 Sum_probs=105.8
Q ss_pred eEEEEEEEEeeCCCCCCC--CCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCC
Q 046822 6 EKLVVEVIAAHNLMPKDG--EGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSS 83 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~--~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~ 83 (971)
|.|+|+|++|+||+.++. .+.+||||++.++++.++|+++++++||.|||+|.|.+.... ...|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~---~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ---NQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCC---CCEEEEEEEECCCCC
Confidence 679999999999999988 889999999999999999999999999999999999997633 379999999999876
Q ss_pred CCCceeEEEEEeCcccccc-CCcccceEEEeEeCC--CCCeeeeEEEEEEEe
Q 046822 84 NSRNFLGKVRAPCSQLCKN-EGEATAQLYTLEKRS--LFSHIRGEISLKLFV 132 (971)
Q Consensus 84 ~~d~~lG~~~i~l~~l~~~-~~~~~~~w~~L~~~~--~~~~~~G~i~l~~~~ 132 (971)
++++||++.+++.++... ......+||+|.+.. ......|+|++++.|
T Consensus 78 -~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 -GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred -CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 789999999999998742 223346899998763 334578999999875
No 38
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.74 E-value=1.3e-17 Score=156.58 Aligned_cols=117 Identities=23% Similarity=0.405 Sum_probs=100.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeeccc-CCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKY-KDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSN 84 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~ 84 (971)
|.|.|+|++|+||+.++..+.+||||++.++++.++|+++. +++||.|||.|.|.+.... ...|.|+|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~---~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDK---KPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCC---CCEEEEEEEeCCCCC-
Confidence 67999999999999999999999999999999999999875 5799999999999997643 378999999998863
Q ss_pred CCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 85 SRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 85 ~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
|++||++.+++.++.... ...+||+|...+ +..|+|.+++.|
T Consensus 77 -~~~iG~~~~~l~~~~~~~--~~~~w~~L~~~~---~~~G~i~l~l~f 118 (118)
T cd08681 77 -PDLIGDTEVDLSPALKEG--EFDDWYELTLKG---RYAGEVYLELTF 118 (118)
T ss_pred -CcceEEEEEecHHHhhcC--CCCCcEEeccCC---cEeeEEEEEEEC
Confidence 899999999999986532 245899998643 578999999875
No 39
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.74 E-value=3e-17 Score=154.50 Aligned_cols=118 Identities=35% Similarity=0.563 Sum_probs=104.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNS 85 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~ 85 (971)
|.|.|+|++|+||+.++..+.+||||++.++++..+|++++++.||.|||+|.|.+.+.. ..|.|+|||++..+ +
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~----~~l~~~v~d~~~~~-~ 75 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIH----DVLEVTVYDEDKDK-K 75 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcC----CEEEEEEEECCCCC-C
Confidence 679999999999999998899999999999999999999999999999999999987543 78999999999876 7
Q ss_pred CceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 86 RNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 86 d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
+++||++.+++.++... ...||+|.++....+.+|+|.+++.+
T Consensus 76 ~~~iG~~~~~l~~~~~~----~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 76 PEFLGKVAIPLLSIKNG----ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred CceeeEEEEEHHHCCCC----CceEEECcccCCCCceeeEEEEEEEe
Confidence 99999999999998532 24799998876666789999999876
No 40
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.74 E-value=3.6e-17 Score=153.93 Aligned_cols=118 Identities=27% Similarity=0.455 Sum_probs=101.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCC
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSR 86 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d 86 (971)
|.|+|++|++|.+++..|.+||||++.++++ ..+|+++++++||.|||.|.|.+.... ..|.|.|||++.++ +|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~----~~l~v~v~d~~~~~-~d 76 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGF----HTVSFYVLDEDTLS-RD 76 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCC----CEEEEEEEECCCCC-CC
Confidence 7899999999999999999999999999876 479999999999999999999987543 68999999999986 79
Q ss_pred ceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEE
Q 046822 87 NFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLF 131 (971)
Q Consensus 87 ~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 131 (971)
++||++.++++.+... ......|++|++........|+|.+.+.
T Consensus 77 ~~iG~~~~~~~~~~~~-~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 77 DVIGKVSLTREVISAH-PRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CEEEEEEEcHHHhccC-CCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999999999888542 2234589999876554567899998875
No 41
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.74 E-value=3.5e-17 Score=155.39 Aligned_cols=120 Identities=26% Similarity=0.521 Sum_probs=102.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEcC--eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCC
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEK--QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNS 85 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~--~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~ 85 (971)
|.|+|++|+||+. ..|.+||||++.+++ +.++|+++++++||.|||.|.|.+.... ..|.|+|||++..+ +
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~----~~l~~~v~d~~~~~-~ 73 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNS----KELLFEVYDNGKKS-D 73 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCC----CEEEEEEEECCCCC-C
Confidence 6899999999987 678999999999974 5789999999999999999999986433 78999999999986 7
Q ss_pred CceeEEEEEeCccccccCCcccceEEEeEeCCC-CCeeeeEEEEEEEeeecc
Q 046822 86 RNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSL-FSHIRGEISLKLFVSTTE 136 (971)
Q Consensus 86 d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~-~~~~~G~i~l~~~~~~~~ 136 (971)
|++||++.+++.++..... ...||+|.++.. .....|+|.+.+.|.+.+
T Consensus 74 ~~~lG~~~i~l~~l~~~~~--~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 74 SKFLGLAIVPFDELRKNPS--GRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred CceEEEEEEeHHHhccCCc--eeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 9999999999999875332 357999987632 346799999999997654
No 42
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.73 E-value=5.8e-17 Score=153.71 Aligned_cols=121 Identities=24% Similarity=0.359 Sum_probs=104.4
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCC
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSN 84 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~ 84 (971)
...|+|+|++|++|...+..|.+||||++.++++.++|++++++.||.|||.|.|.+.+.. ..|.|+|||++.+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~----~~l~i~V~d~~~~-- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPR----SPIKIQVWNSNLL-- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCC----CEEEEEEEECCCC--
Confidence 4689999999999999998999999999999999999999999999999999999887654 7999999999986
Q ss_pred CCceeEEEEEeCccccccCCcccceEEEeEeCC--CCCeeeeEEEEEEEeeec
Q 046822 85 SRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS--LFSHIRGEISLKLFVSTT 135 (971)
Q Consensus 85 ~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~--~~~~~~G~i~l~~~~~~~ 135 (971)
+|++||++.+++..+.. ...+||+|+++. .+++..|+|.+++++.+.
T Consensus 76 ~d~~lG~~~~~l~~~~~----~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 76 CDEFLGQATLSADPNDS----QTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred CCCceEEEEEecccCCC----cCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 48999999999987531 223779997543 456789999999988654
No 43
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.73 E-value=1.7e-17 Score=155.91 Aligned_cols=105 Identities=30% Similarity=0.423 Sum_probs=90.7
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
.+.|.|+|++|+||++++ .|.+||||++.+.+ .+++|+++++++||.|||+|.|.+....++....|.|.|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 578999999999999999 89999999999973 478999999999999999999997433345568999999999
Q ss_pred CCCCCCCceeEEEEEeCccccccCCcccceEEEe
Q 046822 80 RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTL 113 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L 113 (971)
+.++ ++++||++.|+|.++... +....||+|
T Consensus 91 d~~~-~~~~lG~~~i~l~~l~~~--~~~~~W~~L 121 (122)
T cd08381 91 DSLV-ENEFLGGVCIPLKKLDLS--QETEKWYPL 121 (122)
T ss_pred CCCc-CCcEEEEEEEeccccccC--CCccceEEC
Confidence 9986 799999999999998642 234589987
No 44
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.73 E-value=1.4e-17 Score=151.87 Aligned_cols=92 Identities=22% Similarity=0.328 Sum_probs=82.4
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
..+.|.|+|++|+||+ . .|.+||||++.+.. .+++|+++++|+||+|||+|.|.+.. +++....|.|+|||+
T Consensus 12 ~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~-~~l~~~tL~~~V~d~ 87 (118)
T cd08677 12 QKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPE-EESLDGTLTLTLRCC 87 (118)
T ss_pred cCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCH-HHhCCcEEEEEEEeC
Confidence 4689999999999998 3 46699999999973 47899999999999999999999874 567889999999999
Q ss_pred CCCCCCCceeEEEEEeCcccc
Q 046822 80 RRSSNSRNFLGKVRAPCSQLC 100 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~ 100 (971)
|+++ ++++||++.++++++.
T Consensus 88 Drfs-~~d~IG~v~l~l~~~~ 107 (118)
T cd08677 88 DRFS-RHSTLGELRLKLADVS 107 (118)
T ss_pred CCCC-CCceEEEEEEcccccc
Confidence 9998 8999999999999874
No 45
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.73 E-value=4.3e-17 Score=154.86 Aligned_cols=116 Identities=34% Similarity=0.592 Sum_probs=101.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCC----
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRS---- 82 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~---- 82 (971)
.|+|+|++|++|+.+|..|.+||||++.++++.++|+++.+++||.|||+|.|.+..+. ..|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~----~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSS----DRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCC----CEEEEEEEECCCCcccc
Confidence 68999999999999999999999999999989999999999999999999999986543 6899999999852
Q ss_pred ------CCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEE
Q 046822 83 ------SNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKL 130 (971)
Q Consensus 83 ------~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~ 130 (971)
...+++||++.+++.++.. ....||.|++++.++.++|+|++++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~----~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSG----EMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccC----CCCeEEECccCCCCCcEeEEEEEEC
Confidence 1268999999999998732 2358999999888788999999874
No 46
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.72 E-value=2.2e-17 Score=159.34 Aligned_cols=109 Identities=28% Similarity=0.401 Sum_probs=90.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCC------------CCCCCc
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPD------------IAELPY 69 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~------------~~~l~~ 69 (971)
+|.|+|++|+||+. .+|.+||||+|.+.+ ++++|+++++|+||+|||+|.|.+.. .+++..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 48999999999998 468999999999986 57899999999999999999999851 123345
Q ss_pred ceEEEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCC
Q 046822 70 KHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLF 119 (971)
Q Consensus 70 ~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~ 119 (971)
..|.|.|||++.++ +|+|||++.|++..+.... .....||+|++++.+
T Consensus 79 ~~L~i~V~d~~~~~-~ddfLG~v~i~l~~l~~~~-~~~~~W~~L~~~~~~ 126 (148)
T cd04010 79 LELRVDLWHASMGG-GDVFLGEVRIPLRGLDLQA-GSHQAWYFLQPREEK 126 (148)
T ss_pred EEEEEEEEcCCCCC-CCceeEEEEEecccccccC-CcCcceeecCCcccc
Confidence 68999999999875 7999999999999986541 233589999887543
No 47
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.72 E-value=2.4e-17 Score=151.02 Aligned_cols=104 Identities=27% Similarity=0.425 Sum_probs=92.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSR 86 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d 86 (971)
.|.|+|++|++|+..+..+.+||||+++++++.++|++++++.||.|||.|.|.+.++. ...|.|+|||++. +
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~v~v~d~~~----~ 73 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPE---NQELEIEVKDDKT----G 73 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCC---CCEEEEEEEECCC----C
Confidence 48999999999999998899999999999999999999999999999999999998754 2789999999875 7
Q ss_pred ceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 87 NFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 87 ~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
++||++.++|.++.........+||+|++++
T Consensus 74 ~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 74 KSLGSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred CccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence 8999999999999765445567999998654
No 48
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.72 E-value=1.1e-16 Score=151.71 Aligned_cols=119 Identities=24% Similarity=0.403 Sum_probs=98.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSN 84 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~ 84 (971)
..|+|+|++|+||+.+ +.+||||+|.+++. ..+|+++ ++.||.|||+|.|.+..+.. ..+.|.|||++..+
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~---~~l~v~v~d~~~~~- 75 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDV---NSFTISLSNKAKRS- 75 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCc---CEEEEEEEECCCCC-
Confidence 5799999999999875 47999999999875 4788875 68999999999998654432 57899999999986
Q ss_pred CCceeEEEEEeCccccccCCcccceEEEeEeCCC-CCeeeeEEEEEEEeee
Q 046822 85 SRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSL-FSHIRGEISLKLFVST 134 (971)
Q Consensus 85 ~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~-~~~~~G~i~l~~~~~~ 134 (971)
+|++||++.++++++.. +.....||+|++.+. ..+..|+|++++.|..
T Consensus 76 ~d~~iG~v~i~l~~l~~--~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 KDSEIAEVTVQLSKLQN--GQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCCeEEEEEEEHhHccC--CCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 89999999999999865 233468999998643 3467799999999865
No 49
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.72 E-value=6.8e-17 Score=152.88 Aligned_cols=119 Identities=27% Similarity=0.406 Sum_probs=100.4
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCC-CcEEEEEEEeCCCCCcc
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDP-CTVITVGVFDNCSLDKN 677 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~-~~~l~i~V~D~~~~~~~ 677 (971)
.|+|+|++|++|+.++. .|.+ ||||++.+++..++|+++++++||.|||.|.|.+.+. ...|.|+|||++.++
T Consensus 1 ~L~v~vi~a~~L~~~d~---~~~~-DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~-- 74 (123)
T cd04025 1 RLRCHVLEARDLAPKDR---NGTS-DPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS-- 74 (123)
T ss_pred CEEEEEEEeeCCCCCCC---CCCc-CceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC--
Confidence 38999999999988653 6788 9999999999999999999999999999999999875 458999999999765
Q ss_pred ccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCC---CcccceEEEEEEE
Q 046822 678 IINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPS---GVKKMGELHLAVR 730 (971)
Q Consensus 678 ~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~---g~~~~G~i~l~~~ 730 (971)
++++||++.++|+++..+.....||.|...... ..+..|.|++.|+
T Consensus 75 -------~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 75 -------KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred -------CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 899999999999999776666899999864322 1234699998774
No 50
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.72 E-value=7.6e-17 Score=153.94 Aligned_cols=122 Identities=25% Similarity=0.422 Sum_probs=101.7
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeC-CCcEEEEEEEeCCCCCc
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFD-PCTVITVGVFDNCSLDK 676 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~-~~~~l~i~V~D~~~~~~ 676 (971)
|.|.|+|++|+||+..+. ++.|.+ ||||++.++++.++|+++++++||.|||.|.|++.+ ....|.|+|||++.++
T Consensus 1 g~l~v~v~~a~~L~~~~~-~~~~~~-dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~- 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDR-SGKGKS-DPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA- 77 (128)
T ss_pred CEEEEEEEEeeCCCcccC-CCCCCc-CCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC-
Confidence 789999999999997542 126788 999999999999999999999999999999999997 4669999999999664
Q ss_pred cccCCCCCCCceeEEEEEEccccc---CCceEeeeEeceecCCC-CcccceEEEEEEE
Q 046822 677 NIINNSGGRDSRIGKVRIRLSTLE---SDRVYTHSYPLLMLHPS-GVKKMGELHLAVR 730 (971)
Q Consensus 677 ~~~~~~~~~d~~iG~~~i~l~~l~---~~~~~~~~~~L~~~~~~-g~~~~G~i~l~~~ 730 (971)
+|++||++.|+|.++. .......||+|...... .....|+|+|.+.
T Consensus 78 --------~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 78 --------GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred --------CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence 8899999999999986 33445789999865322 2234799999885
No 51
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.72 E-value=7.4e-17 Score=155.02 Aligned_cols=119 Identities=27% Similarity=0.423 Sum_probs=99.7
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE-------EEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeC
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-------WVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDN 671 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-------~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~ 671 (971)
.|+|+|++|+||+..+ ..|.+ ||||++.+++. .++|+++.+++||.|||.|.|.+......|.|+|||+
T Consensus 1 ~L~v~Vi~a~~L~~~d---~~~~~-Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~ 76 (133)
T cd04033 1 ILRVKVLAGIDLAKKD---IFGAS-DPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDE 76 (133)
T ss_pred CEEEEEEEeECCCccc---CCCCc-CcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEEC
Confidence 3889999999998764 47788 99999999643 5799999999999999999999987677899999999
Q ss_pred CCCCccccCCCCCCCceeEEEEEEcccccCCce------EeeeEeceecCCCCcccceEEEEEEEE
Q 046822 672 CSLDKNIINNSGGRDSRIGKVRIRLSTLESDRV------YTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 672 ~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
+.++ +|++||++.++++++..+.. ...||+|......+ +..|+|+|++.|
T Consensus 77 ~~~~---------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~ 132 (133)
T cd04033 77 NRLT---------RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY 132 (133)
T ss_pred CCCC---------CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence 9765 89999999999999865432 35899998644334 346999999987
No 52
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.71 E-value=9.3e-17 Score=151.61 Aligned_cols=118 Identities=27% Similarity=0.402 Sum_probs=100.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEc-CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFE-KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNS 85 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~-~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~ 85 (971)
.|+|+|++|++|+.++..|.+||||++.++ .+.++|+++++++||.|||+|.|.+.. . ..|.|+|||++.++..
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~----~~l~i~V~d~~~~~~~ 75 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-S----SIITIQVFDQKKFKKK 75 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-C----CEEEEEEEECCCCCCC
Confidence 389999999999999989999999999997 678999999999999999999999864 2 7999999999988633
Q ss_pred -CceeEEEEEeCccccccCCcccceEEEeEeCCC--CCeeeeEEEEEE
Q 046822 86 -RNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSL--FSHIRGEISLKL 130 (971)
Q Consensus 86 -d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~--~~~~~G~i~l~~ 130 (971)
|++||++.+++.++...... ...||+|++... .....|+|.+++
T Consensus 76 ~d~~lG~~~i~l~~l~~~~~~-~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 76 DQGFLGCVRIRANAVLPLKDT-GYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCceEeEEEEEHHHccccCCC-ccceeEeecCCCCCCceEeeEEEEEe
Confidence 58999999999999754332 347999977643 557789999875
No 53
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.71 E-value=1.1e-16 Score=150.73 Aligned_cols=117 Identities=30% Similarity=0.475 Sum_probs=99.4
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE-EEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCccc
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-WVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNI 678 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~~ 678 (971)
|.|+|++|+||++++. .|++ ||||++.++++ ..||+++.+++||.|||.|.|.+.+....|.|+|||++.++
T Consensus 2 l~v~vi~a~~L~~~d~---~g~~-DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~--- 74 (121)
T cd04054 2 LYIRIVEGKNLPAKDI---TGSS-DPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS--- 74 (121)
T ss_pred EEEEEEEeeCCcCCCC---CCCC-CceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC---
Confidence 7899999999998754 7888 99999999876 47999999999999999999999877789999999999775
Q ss_pred cCCCCCCCceeEEEEEEcccccCC-ceEeeeEeceecCCCCcccceEEEEEEE
Q 046822 679 INNSGGRDSRIGKVRIRLSTLESD-RVYTHSYPLLMLHPSGVKKMGELHLAVR 730 (971)
Q Consensus 679 ~~~~~~~d~~iG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 730 (971)
+|++||++.+++..+..+ .....|++|...+..+. ..|+|+++++
T Consensus 75 ------~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~-~~G~i~l~~~ 120 (121)
T cd04054 75 ------RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEE-VQGEIHLELS 120 (121)
T ss_pred ------CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCc-cccEEEEEEE
Confidence 899999999999988653 33578999986544333 4599999875
No 54
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.71 E-value=1.8e-16 Score=150.31 Aligned_cols=119 Identities=24% Similarity=0.356 Sum_probs=100.0
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCc
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDK 676 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~ 676 (971)
.+.|+|+|++|++|+..+ ..|.+ ||||++.++++.+||++++++.||.|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~~~~V~v~~A~~L~~~d---~~g~~-dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQD---SGGGA-DPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCC---CCCCc-CccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC--
Confidence 468999999999998754 47888 999999999999999999999999999999999998888999999999854
Q ss_pred cccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecC--CCCcccceEEEEEEEEe
Q 046822 677 NIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLH--PSGVKKMGELHLAVRFS 732 (971)
Q Consensus 677 ~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~--~~g~~~~G~i~l~~~f~ 732 (971)
+|++||++.++++.+..+. .++|+|.... .++ +..|+|.+.+.+.
T Consensus 76 --------~d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~-~~~G~i~~~~~~~ 122 (126)
T cd04046 76 --------CDEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAG-EVPGTISVKVTSS 122 (126)
T ss_pred --------CCCceEEEEEecccCCCcC--ceEEEcccCCCCCCC-CCCCEEEEEEEEc
Confidence 5899999999999875443 5789986322 223 3469999998654
No 55
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.71 E-value=9e-17 Score=147.86 Aligned_cols=101 Identities=18% Similarity=0.282 Sum_probs=88.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNS 85 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~ 85 (971)
+.|.|+|++|++|+.++ ..||||+|++++++.+|++.++ .||.|||.|.|.+.+.. ..|.|+|||++.+ +
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~----~~L~v~V~dkd~~--~ 71 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLD----LGLVIELWNKGLI--W 71 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCC----CEEEEEEEeCCCc--C
Confidence 58999999999997654 5699999999999999999987 59999999999997654 5699999999965 6
Q ss_pred CceeEEEEEeCccccccCCcccceEEEeEeC
Q 046822 86 RNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116 (971)
Q Consensus 86 d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~ 116 (971)
|+|||++.|+|.++...+.....+||+|++.
T Consensus 72 DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred CCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 9999999999999977666666799999865
No 56
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.71 E-value=1.1e-16 Score=151.56 Aligned_cols=118 Identities=31% Similarity=0.446 Sum_probs=101.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSR 86 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d 86 (971)
+|+|+|++|++|..++..+.+||||++.++++..+|+++++++||.|||+|.|.+.... ...|.|+|||++.++ ++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~~l~~~v~d~~~~~-~~ 76 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGA---DSPLSVEVWDWDLVS-KN 76 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCC---CCEEEEEEEECCCCC-CC
Confidence 48999999999999998889999999999999999999999999999999999987643 378999999999876 78
Q ss_pred ceeEEEEEeCccccccCCcccceEEEeEeCCC----CCeeeeEEEEEE
Q 046822 87 NFLGKVRAPCSQLCKNEGEATAQLYTLEKRSL----FSHIRGEISLKL 130 (971)
Q Consensus 87 ~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~----~~~~~G~i~l~~ 130 (971)
++||++.++++++.... ....||.|.+.+. +.+..|.|.+.+
T Consensus 77 ~~iG~~~~~l~~l~~~~--~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 77 DFLGKVVFSIQTLQQAK--QEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred cEeEEEEEEHHHcccCC--CCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 99999999999986432 2357999987532 235679988875
No 57
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.71 E-value=5e-17 Score=153.71 Aligned_cols=109 Identities=27% Similarity=0.384 Sum_probs=93.5
Q ss_pred CCeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDGE-GSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVF 77 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~-g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~ 77 (971)
..+.|.|+|++|+||++++.. |.+||||++.+.. .++||+++++++||+|||+|.|.+.. +++....|.+.||
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~-~~l~~~~L~v~V~ 91 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEA-DLLSSRQLQVSVW 91 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCH-HHhCCcEEEEEEE
Confidence 467899999999999999875 9999999999962 37799999999999999999999864 3455689999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccC-CcccceEEEeE
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNE-GEATAQLYTLE 114 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~w~~L~ 114 (971)
|++.++ ++++||++.|+|.++...+ .+....||+|.
T Consensus 92 ~~~~~~-~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 92 HSRTLK-RRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred eCCCCc-CcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 999876 7999999999999996543 34567999983
No 58
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.71 E-value=1.1e-16 Score=151.31 Aligned_cols=117 Identities=29% Similarity=0.520 Sum_probs=100.0
Q ss_pred eEEEEEEEeeeCCCCCCccC---CCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeC-CCcEEEEEEEeCCC
Q 046822 598 GVLEMGILGATGLMPMKFKE---GKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFD-PCTVITVGVFDNCS 673 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~---~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~-~~~~l~i~V~D~~~ 673 (971)
|.|+|+|++|+||+.++... ..|.+ ||||+++++++.++|++++++.||.|||.|.|.+.+ ....|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~-dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKS-DPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCc-CCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence 68999999999999865311 13678 999999999999999999999999999999999986 45699999999984
Q ss_pred CCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 674 LDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 674 ~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
. +|++||++.++|+++..+.....||+|... ..|+|+++++|
T Consensus 80 ~----------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 80 D----------KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred C----------CCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 3 789999999999999877777899999732 34999998864
No 59
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.71 E-value=1.8e-16 Score=151.77 Aligned_cols=124 Identities=23% Similarity=0.349 Sum_probs=105.6
Q ss_pred CCceEEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECCeEEEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEE
Q 046822 424 SPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLIS 503 (971)
Q Consensus 424 ~p~l~~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~ 503 (971)
.+.++.|+|+|++|++|...|.. +.+||||++.++++.+||+++ +++.||.|||.|.|.+.++..+.|.|+
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~----g~~DPYv~v~~~~~~~kT~vi-----~~t~nP~Wne~f~f~v~~~~~~~l~i~ 81 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSN----GKSDPYCEVSMGSQEHKTKVV-----SDTLNPKWNSSMQFFVKDLEQDVLCIT 81 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCC----CCcCcEEEEEECCEeeecccc-----CCCCCCccCceEEEEecCccCCEEEEE
Confidence 34567999999999999999887 899999999999999999999 899999999999999988878899999
Q ss_pred EEeCcCCCCCceeEEEEEecccccccc-ccccccceeEEcccCCCCCCCcceeeeeeeeeEEEEEc
Q 046822 504 VEDHVGPGKDEIVGKVLIPVSAVERRT-DDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSL 568 (971)
Q Consensus 504 V~d~d~~~~d~~iG~~~i~L~~l~~~~-~~~~~~~~w~~L~~~~~~~~~~~~~~~~~g~i~l~l~l 568 (971)
|||++..++|++||++.++|.++.... ..+....+|..+.+.. .|+|++.+.+
T Consensus 82 V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~------------~g~i~l~~~~ 135 (136)
T cd08375 82 VFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVP------------TGEVVVKLDL 135 (136)
T ss_pred EEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecccccc------------ceeEEEEEEe
Confidence 999998888999999999999987632 2223345677775544 6889988865
No 60
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.70 E-value=1.8e-16 Score=148.47 Aligned_cols=115 Identities=25% Similarity=0.359 Sum_probs=101.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECCeEEEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEEEEeCc
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHV 508 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d~d 508 (971)
+++|+|++|+||+..+.. +.+||||+++++++.+||+++ .++.||.|||.|.|.+.++..+.|.|+|||++
T Consensus 1 ~~~V~v~~a~~L~~~~~~----~~~dPyv~v~~~~~~~kT~v~-----~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~ 71 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDN----GLSDPYVKFRLGNEKYKSKVC-----SKTLNPQWLEQFDLHLFDDQSQILEIEVWDKD 71 (116)
T ss_pred CEEEEEEEEECCCCCCCC----CCCCcEEEEEECCEeEecccc-----cCCCCCceeEEEEEEecCCCCCEEEEEEEECC
Confidence 378999999999999887 799999999999999999999 89999999999999998877789999999999
Q ss_pred CCCCCceeEEEEEeccccccccccccccceeEEcccCCCCCCCcceeeeeeeeeEEEEEcc
Q 046822 509 GPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLD 569 (971)
Q Consensus 509 ~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~g~i~l~l~l~ 569 (971)
..+++++||++.++|+++... .....||+|+... |++++++.+.
T Consensus 72 ~~~~~~~iG~~~~~l~~l~~~----~~~~~w~~L~~~~-------------G~~~~~~~~~ 115 (116)
T cd08376 72 TGKKDEFIGRCEIDLSALPRE----QTHSLELELEDGE-------------GSLLLLLTLT 115 (116)
T ss_pred CCCCCCeEEEEEEeHHHCCCC----CceEEEEEccCCC-------------cEEEEEEEec
Confidence 888999999999999998754 2468999998653 7888877653
No 61
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.70 E-value=6e-17 Score=153.16 Aligned_cols=107 Identities=28% Similarity=0.444 Sum_probs=91.4
Q ss_pred CCeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDGE-GSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVF 77 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~-g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~ 77 (971)
..+.|.|+|++|+||++++.. |.+||||++.+.. .+++|+++++++||.|||+|.|.+.. +++....|.|.||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~-~~l~~~~L~~~V~ 91 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVER-EELPTRVLNLSVW 91 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCH-HHhCCCEEEEEEE
Confidence 357899999999999999975 8999999999962 35899999999999999999999864 3455679999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
|++.++ ++++||++.|+|.++... .....||+|+
T Consensus 92 d~~~~~-~~~~iG~~~i~L~~~~~~--~~~~~W~~L~ 125 (125)
T cd08393 92 HRDSLG-RNSFLGEVEVDLGSWDWS--NTQPTWYPLQ 125 (125)
T ss_pred eCCCCC-CCcEeEEEEEecCccccC--CCCcceEECc
Confidence 999976 799999999999999643 3345899984
No 62
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.70 E-value=2e-16 Score=149.42 Aligned_cols=106 Identities=18% Similarity=0.222 Sum_probs=90.6
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-----CEEEeeecccCCCCCeecceeEEEeeC---CCcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-----QKWVRTRTVVDSLSPKWNEQYTWEVFD---PCTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-----~~~~rT~~~~~~~nP~Wne~~~~~v~~---~~~~l~i 666 (971)
+..|.|.|+|++|+||++.+. ..|.+ ||||++.+. ....||+++++++||.|||.|.|++.. ....|.|
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~--~~~~~-DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~ 88 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDE--AKKRS-NPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQL 88 (125)
T ss_pred CCCCeEEEEEEEecCCCccCC--CCCCC-CcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 456889999999999987642 25778 999999983 235799999999999999999999874 3458999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
+|||++.++ ++++||++.|+|.++......+.||||.
T Consensus 89 ~V~d~~~~~---------~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 89 SVWHYDRFG---------RNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EEEECCCCC---------CCcEEEEEEEeCCcccccCCcccEEECc
Confidence 999999765 8999999999999998888889999983
No 63
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.69 E-value=2e-16 Score=144.28 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=85.3
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC----EEEeeecccCCCCCeecceeEEEeeC---CCcEEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ----KWVRTRTVVDSLSPKWNEQYTWEVFD---PCTVITVG 667 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~----~~~rT~~~~~~~nP~Wne~~~~~v~~---~~~~l~i~ 667 (971)
+..|.|.|+|++|+||+ . .|.+ ||||++.+.. .+.+|+++++|+||.|||.|.|+|.. +...|.|+
T Consensus 11 ~~~~~L~V~vikA~~L~-~-----~g~s-DPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~ 83 (118)
T cd08677 11 KQKAELHVNILEAENIS-V-----DAGC-ECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLT 83 (118)
T ss_pred CcCCEEEEEEEEecCCC-C-----CCCC-CeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEE
Confidence 55689999999999998 2 3568 9999999853 46899999999999999999999874 34489999
Q ss_pred EEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEec
Q 046822 668 VFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPL 711 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 711 (971)
|||+|+++ ++++||++.++++++..+....+|..|
T Consensus 84 V~d~Drfs---------~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 84 LRCCDRFS---------RHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEeCCCCC---------CCceEEEEEEccccccCCccccchhcC
Confidence 99999887 999999999999987555555677654
No 64
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.69 E-value=1.5e-16 Score=150.31 Aligned_cols=107 Identities=23% Similarity=0.386 Sum_probs=91.2
Q ss_pred CCeEEEEEEEEeeCCCCCCC-CCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDG-EGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVF 77 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~-~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~ 77 (971)
..+.|.|+|++|+||++++. .|.+||||++.+.. .+++|+++++++||.|||+|.|.+... ++....|.|.||
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~-~l~~~~L~~~V~ 91 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHS-QLETRTLQLSVW 91 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHH-HhCCCEEEEEEE
Confidence 56889999999999998875 57999999999962 368999999999999999999998643 355578999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
|++.++ ++++||++.|++.++... .....||+|+
T Consensus 92 d~~~~~-~~~~lG~~~i~l~~~~~~--~~~~~w~~l~ 125 (125)
T cd04029 92 HYDRFG-RNTFLGEVEIPLDSWNFD--SQHEECLPLH 125 (125)
T ss_pred ECCCCC-CCcEEEEEEEeCCccccc--CCcccEEECc
Confidence 999987 799999999999999654 2345899984
No 65
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.69 E-value=9.9e-17 Score=150.18 Aligned_cols=107 Identities=21% Similarity=0.310 Sum_probs=92.9
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC------eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK------QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVF 77 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~ 77 (971)
..+.|.|+|++|+||++.+..|.+||||++.+.. .+++|+++++++||+|||+|.|.+. .+++....|.|.||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~-~~~L~~~~L~~~V~ 90 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPIS-STKLYQKTLQVDVC 90 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECC-HHHhhcCEEEEEEE
Confidence 4678999999999999998889999999999862 3789999999999999999999976 45677899999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccCCcccceEEEe
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTL 113 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L 113 (971)
|+++++ ++++||++.|+|+++...+. ....||+|
T Consensus 91 ~~~~~~-~~~~lG~~~i~L~~~~~~~~-~~~~Wy~l 124 (124)
T cd08680 91 SVGPDQ-QEECLGGAQISLADFESSEE-MSTKWYNL 124 (124)
T ss_pred eCCCCC-ceeEEEEEEEEhhhccCCCc-cccccccC
Confidence 999876 79999999999999955433 34579976
No 66
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.69 E-value=3.8e-16 Score=153.48 Aligned_cols=120 Identities=24% Similarity=0.359 Sum_probs=100.3
Q ss_pred CeEEEEEEEEeeCCCCCC------------------------------CCCCCCcEEEEEEcCeE-EEeecccCCCCCee
Q 046822 5 KEKLVVEVIAAHNLMPKD------------------------------GEGSSSPFVEVEFEKQI-LRTQVKYKDLNPIW 53 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d------------------------------~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~w 53 (971)
-|.|.|+|.+|++|+.+| ..|.+||||+|.+++.+ .||++++++.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 378999999999999987 35679999999999764 79999999999999
Q ss_pred eeeeEEecCCCCCCCcceEEEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCC-eeeeEEEEEEEe
Q 046822 54 NEKLVFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFS-HIRGEISLKLFV 132 (971)
Q Consensus 54 ne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~ 132 (971)
||+|.|.+.... +.|.|.|||++.++ +++||++.++++++.. +.....||+|.+...+. +..|.|++++.|
T Consensus 86 nE~F~~~~~~~~----~~l~~~V~d~d~~~--~~~IG~~~i~l~~l~~--g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHYA----SHVEFTVKDNDVVG--AQLIGRAYIPVEDLLS--GEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCCC----CEEEEEEEeCCCcC--CcEEEEEEEEhHHccC--CCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 999999987654 68999999999874 6899999999999864 33446899998753332 345899999877
No 67
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.69 E-value=2.9e-16 Score=147.57 Aligned_cols=113 Identities=22% Similarity=0.324 Sum_probs=96.6
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC---CEEEeeecccCCCCCeecceeEEEeeCC-CcEEEEEEEeCCCCC
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---QKWVRTRTVVDSLSPKWNEQYTWEVFDP-CTVITVGVFDNCSLD 675 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g---~~~~rT~~~~~~~nP~Wne~~~~~v~~~-~~~l~i~V~D~~~~~ 675 (971)
|.|+|++|++|+..+ ..|++ ||||++.++ ....||+++.++.||.|||.|.|.+... ...|.|+|||++.+
T Consensus 2 L~V~vi~a~~L~~~~---~~~~~-Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~- 76 (119)
T cd04036 2 LTVRVLRATNITKGD---LLSTP-DCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV- 76 (119)
T ss_pred eEEEEEEeeCCCccC---CCCCC-CcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-
Confidence 789999999998764 36788 999999985 3578999999999999999999999764 44899999999843
Q ss_pred ccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 676 KNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 676 ~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
+|++||++.++|+++..+.....||+|... +.|+|++++.+.
T Consensus 77 ---------~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~------~~g~l~~~~~~~ 118 (119)
T cd04036 77 ---------MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQ------GKEELEVEFLLE 118 (119)
T ss_pred ---------CCcccEEEEEEHHHCCCCCcEEEEEECCCC------CCceEEEEEEee
Confidence 689999999999999988888999999632 248998888753
No 68
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.69 E-value=4e-16 Score=149.86 Aligned_cols=124 Identities=26% Similarity=0.433 Sum_probs=101.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCC----CCC--CcceEEEEEEeCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDI----AEL--PYKHIEVNVFNER 80 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~----~~l--~~~~L~i~V~d~~ 80 (971)
.|+|+|++|++|+.+|..|.+||||+|.++++.++|+++++|+||.|||+|.|.+... +.+ ....|.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 6899999999999999999999999999999999999999999999999999985321 111 1257999999999
Q ss_pred CCCCCCceeEEEEE-eCcccccc-CCcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 81 RSSNSRNFLGKVRA-PCSQLCKN-EGEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 81 ~~~~~d~~lG~~~i-~l~~l~~~-~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
..+ +|++||++.+ ++..+... ......+||+|.+.+ ..+|+|++++.+..
T Consensus 82 ~~~-~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~---~~~Geil~~~~~~~ 133 (135)
T cd04017 82 SVG-KDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG---QSAGELLAAFELIE 133 (135)
T ss_pred CCC-CCccceEEEeeeeeecccCCCCCCCceEEEeecCC---CchhheeEEeEEEE
Confidence 976 7899999997 55555322 234456999998554 46899999999865
No 69
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.68 E-value=5.6e-16 Score=148.49 Aligned_cols=119 Identities=20% Similarity=0.377 Sum_probs=101.4
Q ss_pred CCCeEEEEEEEEeeCCCCCCCC----------CCCCcEEEEEEcCeE-EEeecccCCCCCeeeeeeEEecCCCCCCCcce
Q 046822 3 DGKEKLVVEVIAAHNLMPKDGE----------GSSSPFVEVEFEKQI-LRTQVKYKDLNPIWNEKLVFDVPDIAELPYKH 71 (971)
Q Consensus 3 ~~~~~L~V~V~~a~~L~~~d~~----------g~~dPyv~v~~~~~~-~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~ 71 (971)
|-.|.|+|+|++|++|...+.. |.+||||++.++++. .+|++++++.||.|||+|.|.+.. . ..
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~----~~ 75 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-G----RN 75 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-C----CE
Confidence 3468999999999999988852 689999999999865 799999999999999999999863 2 68
Q ss_pred EEEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 72 IEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 72 L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
|.|.|||++.++ ++++||++.++|+++...+......||+|++ +|.|++++.+..
T Consensus 76 l~~~v~d~~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-------~G~l~l~~~~~~ 130 (132)
T cd04014 76 LELTVFHDAAIG-PDDFVANCTISFEDLIQRGSGSFDLWVDLEP-------QGKLHVKIELKG 130 (132)
T ss_pred EEEEEEeCCCCC-CCceEEEEEEEhHHhcccCCCcccEEEEccC-------CcEEEEEEEEec
Confidence 999999998876 7899999999999987643444578999972 599999998864
No 70
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.68 E-value=2.3e-16 Score=149.62 Aligned_cols=111 Identities=22% Similarity=0.331 Sum_probs=91.9
Q ss_pred CCeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEc---CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGE-GSSSPFVEVEFE---KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~-g~~dPyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
..+.|.|+|++|+||+.++.. |.+||||++.+. .+++||+++++++||.|||+|.|......++....|.|.|||+
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~ 93 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF 93 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence 467899999999999998876 899999999996 3467999999999999999999953333344456899999999
Q ss_pred CCCCCCCceeEEEEEeCccccccCCcccceEEEeEe
Q 046822 80 RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEK 115 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~ 115 (971)
+.++ ++++||++.|+|+++...++....-|.+|++
T Consensus 94 d~~~-~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 94 DRYS-RDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred CCCC-CCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 9986 7999999999999996553333557888863
No 71
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.68 E-value=3.4e-16 Score=148.58 Aligned_cols=120 Identities=30% Similarity=0.408 Sum_probs=99.2
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC--EEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCC
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ--KWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSL 674 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~--~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~ 674 (971)
+|.|+|+|++|+||+..+. ..|.+ ||||++++++ ..+||+++.++.||.|||.|.|.+......|.|+|||++..
T Consensus 1 ~g~l~v~v~~a~~L~~~~~--~~~~~-dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~ 77 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDI--IGGTV-DPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDK 77 (124)
T ss_pred CeEEEEEEEcccCCCcccc--cCCCC-CCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCC
Confidence 5899999999999985432 24567 9999999987 78999999999999999999999987677999999999865
Q ss_pred CccccCCCCCCCceeEEEEEEcccccCCceEee-eEeceecCCCCcccceEEEEEEEEe
Q 046822 675 DKNIINNSGGRDSRIGKVRIRLSTLESDRVYTH-SYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 675 ~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~-~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
+ +|++||++.++|.++..+..... ++++. ..| +..|+|++.++|.
T Consensus 78 ~---------~d~~iG~~~~~l~~l~~~~~~~~~~~~~~---~~~-k~~G~i~~~l~~~ 123 (124)
T cd04044 78 R---------KDKLIGTAEFDLSSLLQNPEQENLTKNLL---RNG-KPVGELNYDLRFF 123 (124)
T ss_pred C---------CCceeEEEEEEHHHhccCccccCcchhhh---cCC-ccceEEEEEEEeC
Confidence 4 89999999999999987665543 34443 223 3469999999884
No 72
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.68 E-value=3.1e-16 Score=148.12 Aligned_cols=115 Identities=30% Similarity=0.478 Sum_probs=98.8
Q ss_pred eEEEEEEEEeeCCCCCCC------CCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 6 EKLVVEVIAAHNLMPKDG------EGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~------~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
|.|.|+|++|+||+.++. .|.+||||++.++++.++|++++++.||.|||+|.|.+.... ...|.|+|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~---~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVP---GQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCC---CCEEEEEEEec
Confidence 579999999999998875 368999999999999999999999999999999999987543 37999999999
Q ss_pred CCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 80 RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
+.. ++++||++.+++.++... .....||+|++. .+|+|++.+.|
T Consensus 78 ~~~--~~~~iG~~~i~l~~l~~~--~~~~~w~~L~~~-----~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD--KDDFLGRLSIDLGSVEKK--GFIDEWLPLEDV-----KSGRLHLKLEW 121 (121)
T ss_pred CCC--CCCcEEEEEEEHHHhccc--CccceEEECcCC-----CCceEEEEEeC
Confidence 986 689999999999998753 234699999753 35999988764
No 73
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.68 E-value=2.6e-16 Score=144.11 Aligned_cols=96 Identities=23% Similarity=0.323 Sum_probs=83.2
Q ss_pred eEEEEEEEeeeCCCCCCccC-CCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCC--CcEEEEEEEeCCCC
Q 046822 598 GVLEMGILGATGLMPMKFKE-GKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDP--CTVITVGVFDNCSL 674 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~-~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~--~~~l~i~V~D~~~~ 674 (971)
|+|.|+|++|+||++.+... ..+.+ ||||++.++++.+||+++++++||+|||.|.|++.+. ...|.|+|||+|.+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~-DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~ 79 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDM-DPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKF 79 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCcc-CceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCC
Confidence 78999999999999876422 12457 9999999999999999999999999999999999753 34899999999977
Q ss_pred CccccCCCCCCCceeEEEEEEcccccCCc
Q 046822 675 DKNIINNSGGRDSRIGKVRIRLSTLESDR 703 (971)
Q Consensus 675 ~~~~~~~~~~~d~~iG~~~i~l~~l~~~~ 703 (971)
+ +|++||++.++|++|..+.
T Consensus 80 ~---------~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 80 S---------FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred C---------CCcceEEEEEEHHHHHhhC
Confidence 5 8999999999999997654
No 74
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.68 E-value=3.2e-16 Score=148.22 Aligned_cols=105 Identities=24% Similarity=0.351 Sum_probs=88.9
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-----CEEEeeecccCCCCCeecceeEEEeeC---CCcEEEEE
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-----QKWVRTRTVVDSLSPKWNEQYTWEVFD---PCTVITVG 667 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-----~~~~rT~~~~~~~nP~Wne~~~~~v~~---~~~~l~i~ 667 (971)
..+.|.|+|++|+||++++. ..|.+ ||||++.+. ....||+++++++||.|||.|.|++.. ....|.|+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~--~~g~~-dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~ 89 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADP--KKQRS-DPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLS 89 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCC--CCCCC-CcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 34789999999999998753 13778 999999983 234799999999999999999999863 23489999
Q ss_pred EEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 668 VFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
|||++.++ ++++||++.|+|.++..+.....||+|.
T Consensus 90 V~d~~~~~---------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 90 VWHRDSLG---------RNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EEeCCCCC---------CCcEeEEEEEecCccccCCCCcceEECc
Confidence 99999765 8999999999999997777678999973
No 75
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.68 E-value=3.3e-16 Score=150.09 Aligned_cols=106 Identities=29% Similarity=0.422 Sum_probs=89.3
Q ss_pred CeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEE-
Q 046822 5 KEKLVVEVIAAHNLMPKD-GEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVF- 77 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~- 77 (971)
.+.|.|+|++|+||++++ ..|.+||||++.+.. .+++|+++++|+||+|||+|.|.+.. ....|.|+||
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l----~~~~L~v~V~~ 103 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSP----TGKTLQVIVWG 103 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcC----CCCEEEEEEEe
Confidence 578999999999999875 578899999999963 27899999999999999999999872 3489999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
|++++. +++|||++.|+|+.+.... ....||+|.+..
T Consensus 104 d~~~~~-~~~~iG~~~i~L~~l~~~~--~~~~Wy~L~~~~ 140 (146)
T cd04028 104 DYGRMD-KKVFMGVAQILLDDLDLSN--LVIGWYKLFPTS 140 (146)
T ss_pred CCCCCC-CCceEEEEEEEcccccCCC--CceeEEecCCcc
Confidence 577765 7999999999999985322 335899998764
No 76
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.67 E-value=3.4e-16 Score=149.95 Aligned_cols=104 Identities=23% Similarity=0.344 Sum_probs=89.6
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE--CC---EEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEE-eC
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY--GQ---KWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVF-DN 671 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~--g~---~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~-D~ 671 (971)
|.|.|+|++|+||++.+ +..|.+ ||||++.+ ++ .+.||+++++++||+|||.|.|++......|.|+|| |+
T Consensus 29 ~~L~V~Vi~ArnL~~~~--~~~g~s-DPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~ 105 (146)
T cd04028 29 GQLEVEVIRARGLVQKP--GSKVLP-APYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDY 105 (146)
T ss_pred CEEEEEEEEeeCCCccc--CCCCCc-CCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCC
Confidence 68999999999998753 235788 99999999 33 368999999999999999999999966669999999 56
Q ss_pred CCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 672 CSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 672 ~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
+.+. ++++||.+.|+|+++..+.....||+|..
T Consensus 106 ~~~~---------~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~ 138 (146)
T cd04028 106 GRMD---------KKVFMGVAQILLDDLDLSNLVIGWYKLFP 138 (146)
T ss_pred CCCC---------CCceEEEEEEEcccccCCCCceeEEecCC
Confidence 6554 89999999999999987777789999985
No 77
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.67 E-value=6.1e-16 Score=146.91 Aligned_cols=124 Identities=25% Similarity=0.397 Sum_probs=98.1
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCccc
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNI 678 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~~ 678 (971)
.|+|+|++|++|+..+ ..|.+ ||||++.++++..+|+++.+++||.|||.|.|.+..+...|.|+|||+|......
T Consensus 2 ~L~V~vi~a~~L~~~d---~~g~~-DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKD---KTGTS-DPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCC---CCCCc-CcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccc
Confidence 6899999999999764 47888 9999999999999999999999999999999999877779999999998421000
Q ss_pred --cCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEE
Q 046822 679 --INNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAV 729 (971)
Q Consensus 679 --~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 729 (971)
..-..++|++||.+.+++.++.... ..||+|......+ +..|+|.|++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~~--~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGEM--DVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCCC--CeEEECccCCCCC-cEeEEEEEEC
Confidence 0001147999999999999986443 7899998544322 2369998864
No 78
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.67 E-value=2.8e-16 Score=147.75 Aligned_cols=100 Identities=25% Similarity=0.348 Sum_probs=87.6
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-----CEEEeeecccCCCCCeecceeEEEee---C-CCcEEEEEE
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-----QKWVRTRTVVDSLSPKWNEQYTWEVF---D-PCTVITVGV 668 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-----~~~~rT~~~~~~~nP~Wne~~~~~v~---~-~~~~l~i~V 668 (971)
|.|.|+|++|+||++++ .|.+ ||||++.+. ..+.||++++++.||.|||+|.|++. + ....|.|+|
T Consensus 13 ~~L~V~Vi~A~~L~~~~----~~~~-DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V 87 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD----GSDP-DPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSV 87 (122)
T ss_pred CEEEEEEEEeeCCCCCC----CCCC-CCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEE
Confidence 68999999999999864 5788 999999995 34689999999999999999999973 2 345899999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEec
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPL 711 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 711 (971)
||++.++ ++++||++.|+|+++..+.....||+|
T Consensus 88 ~d~d~~~---------~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 88 WSHDSLV---------ENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred EeCCCCc---------CCcEEEEEEEeccccccCCCccceEEC
Confidence 9999775 899999999999999887777899987
No 79
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.67 E-value=2.3e-16 Score=145.82 Aligned_cols=106 Identities=28% Similarity=0.439 Sum_probs=92.2
Q ss_pred EEEEEEEeeCCCCCCC-CCCCCcEEEEEEcCeEEEeecccCCCCCee-eeeeEEecCCCCCCCcceEEEEEEeCCCCCCC
Q 046822 8 LVVEVIAAHNLMPKDG-EGSSSPFVEVEFEKQILRTQVKYKDLNPIW-NEKLVFDVPDIAELPYKHIEVNVFNERRSSNS 85 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~-~g~~dPyv~v~~~~~~~~T~~~~~t~nP~w-ne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~ 85 (971)
|.|+|++|+||+.++. .|.+||||++.++++.++|+++++++||.| ||+|.|.+.... +....|.|+|||++.++ +
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~-l~~~~l~i~V~d~d~~~-~ 78 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE-LQDEPLQIRVMDHDTYS-A 78 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHH-cCCCeEEEEEEeCCCCC-C
Confidence 6899999999999884 789999999999999999999999999999 999999987542 34578999999999986 7
Q ss_pred CceeEEEEEeCccccccC-CcccceEEEeEe
Q 046822 86 RNFLGKVRAPCSQLCKNE-GEATAQLYTLEK 115 (971)
Q Consensus 86 d~~lG~~~i~l~~l~~~~-~~~~~~w~~L~~ 115 (971)
+++||++.+++.++...+ ......||+|..
T Consensus 79 ~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 79 NDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 899999999999997642 344678999864
No 80
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.67 E-value=3.9e-16 Score=144.64 Aligned_cols=107 Identities=25% Similarity=0.347 Sum_probs=92.1
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCC-CCCcceEEEEEEeCCCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIA-ELPYKHIEVNVFNERRS 82 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~-~l~~~~L~i~V~d~~~~ 82 (971)
....|+|+|++|++|. .|.+||||++++++++++|++++++.||.|||+|.|.+..+. ++....|.|+|||++.+
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 3578999999999998 578999999999999999999999999999999999975433 34457899999999998
Q ss_pred CCCCceeEEEEEeCcccccc-CCcccceEEEeEe
Q 046822 83 SNSRNFLGKVRAPCSQLCKN-EGEATAQLYTLEK 115 (971)
Q Consensus 83 ~~~d~~lG~~~i~l~~l~~~-~~~~~~~w~~L~~ 115 (971)
+ +|++||++.++++++... .......||+|..
T Consensus 78 ~-~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 R-SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred c-cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 7 699999999999999654 3355679999974
No 81
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.67 E-value=1e-15 Score=145.64 Aligned_cols=118 Identities=26% Similarity=0.467 Sum_probs=99.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-------------eEEEeecccCCCCCee-eeeeEEecCCCCCCCcceE
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-------------QILRTQVKYKDLNPIW-NEKLVFDVPDIAELPYKHI 72 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-------------~~~~T~~~~~t~nP~w-ne~f~f~v~~~~~l~~~~L 72 (971)
.+.|++++|+||+ ++..|.+||||++.+.+ +.++|+++++++||+| ||+|.|.+.. . +.|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~----~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-T----DVL 75 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-C----CEE
Confidence 4679999999998 77789999999999952 4689999999999999 9999999863 2 689
Q ss_pred EEEEEeCCCCCC--CCceeEEEEEeCccccccCC-cccceEEEeEeCCCCCeeeeEEEEEE
Q 046822 73 EVNVFNERRSSN--SRNFLGKVRAPCSQLCKNEG-EATAQLYTLEKRSLFSHIRGEISLKL 130 (971)
Q Consensus 73 ~i~V~d~~~~~~--~d~~lG~~~i~l~~l~~~~~-~~~~~w~~L~~~~~~~~~~G~i~l~~ 130 (971)
.|+|||++..++ .+++||++.+++.++...+. ....+||+|++++.++.++|+|.+++
T Consensus 76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999999865432 27999999999999965432 23458999999999999999999986
No 82
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.66 E-value=5.6e-16 Score=143.71 Aligned_cols=100 Identities=18% Similarity=0.269 Sum_probs=85.9
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-C----C--EEEeeecccCCCCCeecceeEEEeeCC----CcEEEEE
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-G----Q--KWVRTRTVVDSLSPKWNEQYTWEVFDP----CTVITVG 667 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-g----~--~~~rT~~~~~~~nP~Wne~~~~~v~~~----~~~l~i~ 667 (971)
.|+|+|++|++|+..+ .|.+ ||||++.+ | . ++++|+++.+++||+|||.|.|.+... ...|.|.
T Consensus 1 kL~V~Vi~A~~L~~~d----~g~~-DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~ 75 (120)
T cd08395 1 KVTVKVVAANDLKWQT----TGMF-RPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHIC 75 (120)
T ss_pred CEEEEEEECcCCCccc----CCCC-CCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEE
Confidence 3899999999998753 4888 99999997 4 2 357899999999999999999999742 2379999
Q ss_pred EEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 668 VFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
|||+|..+ +|++||++.++|+++..+.....|++|.
T Consensus 76 V~D~d~~~---------~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 76 VKDYCFAR---------DDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred EEEecccC---------CCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 99998554 7999999999999998888888999996
No 83
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.66 E-value=7.2e-16 Score=146.10 Aligned_cols=105 Identities=21% Similarity=0.379 Sum_probs=91.3
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC---CEEEeeecccCCCCCeecceeEEEeeCC---CcEEEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---QKWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITVGV 668 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g---~~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i~V 668 (971)
+..|.|.|+|++|+||++++ ..|.+ ||||++.++ ....||++++++.||.|||.|.|++... ...|.|+|
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d---~~g~~-dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V 88 (124)
T cd08387 13 KDMGILNVKLIQARNLQPRD---FSGTA-DPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLL 88 (124)
T ss_pred CCCCEEEEEEEEeeCCCCCC---CCCCC-CCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEE
Confidence 44589999999999999764 47788 999999983 4568999999999999999999998743 45899999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
||++.++ +|++||++.|+|+++..+...+.||+|.
T Consensus 89 ~d~~~~~---------~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 89 YDFDQFS---------RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred EECCCCC---------CCceeEEEEEecccccCCCCcceEEECc
Confidence 9999765 8999999999999998777789999985
No 84
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.66 E-value=1.3e-15 Score=145.32 Aligned_cols=123 Identities=22% Similarity=0.412 Sum_probs=102.5
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEE-EeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCC
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKW-VRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLD 675 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~-~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~ 675 (971)
...|.|.|++|+||++++ ||||.+.+++.. .||+++.++.||.|+|.|.|....+...|+|.||+.+...
T Consensus 10 ~~sL~v~V~EAk~Lp~~~---------~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~ 80 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK---------RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEccCCCCcC---------CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc
Confidence 467999999999998742 899999999887 5999999999999999999987777789999998765221
Q ss_pred ccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCC-------cccceEEEEEEEEee
Q 046822 676 KNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSG-------VKKMGELHLAVRFSC 733 (971)
Q Consensus 676 ~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g-------~~~~G~i~l~~~f~~ 733 (971)
.+..++++||++.||+.++..+...+.||||...+... .+..++|++.++|..
T Consensus 81 -----~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 81 -----KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred -----ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 12237899999999999999988889999999765543 234589999999984
No 85
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.66 E-value=3.6e-16 Score=146.10 Aligned_cols=105 Identities=22% Similarity=0.388 Sum_probs=88.2
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||++++ .|.+||||++.+.. .+++|+++++++||.|||+|.|.+.... + ...|.|.|||
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~-~-~~~l~v~V~~ 86 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERD-Y-QKRLLVTVWN 86 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHH-h-CCEEEEEEEC
Confidence 4678999999999999998 88999999999974 3679999999999999999999986432 2 2468899999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEe
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTL 113 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L 113 (971)
++..+.++++||++.|++.++.. + +....||.|
T Consensus 87 ~~~~~~~~~~lG~~~i~l~~~~~-~-~~~~~Wy~l 119 (119)
T cd08685 87 KLSKSRDSGLLGCMSFGVKSIVN-Q-KEISGWYYL 119 (119)
T ss_pred CCCCcCCCEEEEEEEecHHHhcc-C-ccccceEeC
Confidence 99875457999999999999973 3 334689986
No 86
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.66 E-value=4.1e-16 Score=148.17 Aligned_cols=107 Identities=27% Similarity=0.457 Sum_probs=91.0
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+.++..+.+||||+|.+.+ +.++|+++++++||.|||+|.|.+....++....|.|+|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 4688999999999999999889999999999974 57899999999999999999999755444445799999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
++.++ ++++||++.+++.+... +. ...||+|+
T Consensus 94 ~~~~~-~~~~iG~~~i~l~~~~~-~~--~~~W~~L~ 125 (125)
T cd04031 94 YDRDG-ENDFLGEVVIDLADALL-DD--EPHWYPLQ 125 (125)
T ss_pred CCCCC-CCcEeeEEEEecccccc-cC--CcceEECc
Confidence 99876 79999999999999432 22 24899985
No 87
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.66 E-value=5.5e-16 Score=141.99 Aligned_cols=93 Identities=23% Similarity=0.410 Sum_probs=82.2
Q ss_pred eEEEEEEEEeeCCCCCCCC----CCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGE----GSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERR 81 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~----g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~ 81 (971)
|.|.|+|++|++|++.+.. +.+||||++.++++.++|+++++++||+|||.|.|.+..... ...|.|+|||++.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~--~~~L~~~V~D~d~ 78 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEK--NFDIQFKVLDKDK 78 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccC--CCEEEEEEEECCC
Confidence 6899999999999987642 358999999999999999999999999999999999865431 3589999999999
Q ss_pred CCCCCceeEEEEEeCccccc
Q 046822 82 SSNSRNFLGKVRAPCSQLCK 101 (971)
Q Consensus 82 ~~~~d~~lG~~~i~l~~l~~ 101 (971)
++ +|++||++.++|+++..
T Consensus 79 ~~-~dd~IG~~~l~L~~l~~ 97 (108)
T cd04039 79 FS-FNDYVATGSLSVQELLN 97 (108)
T ss_pred CC-CCcceEEEEEEHHHHHh
Confidence 87 79999999999999964
No 88
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.66 E-value=3.2e-16 Score=145.16 Aligned_cols=103 Identities=26% Similarity=0.396 Sum_probs=87.9
Q ss_pred eEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEcC---eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGE-GSSSPFVEVEFEK---QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERR 81 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~ 81 (971)
|+|+|+|++|++|+..|.. |.+||||+|.+.+ ..++|+++++++||.|||+|.|.+...+......|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999987 8999999999853 46899999999999999999998765422234689999999999
Q ss_pred CCCCCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 82 SSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 82 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
++ +|++||++.+++.++... ..|+++.
T Consensus 81 ~~-~dd~lG~~~i~l~~l~~~-----~~~~~~~ 107 (111)
T cd04041 81 FT-ADDRLGRVEIDLKELIED-----RNWMGRR 107 (111)
T ss_pred CC-CCCcceEEEEEHHHHhcC-----CCCCccc
Confidence 86 799999999999999743 2577764
No 89
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.66 E-value=4.7e-16 Score=143.75 Aligned_cols=102 Identities=27% Similarity=0.403 Sum_probs=89.1
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCee-cceeEEEeeCC---CcEEEEEEEeCCCCC
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKW-NEQYTWEVFDP---CTVITVGVFDNCSLD 675 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~W-ne~~~~~v~~~---~~~l~i~V~D~~~~~ 675 (971)
|.|+|++|+||+.++. ..|.+ ||||++.+++..+||+++.+++||.| ||.|.|.+... ...|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~d~--~~~~~-Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDR--SSDLT-DAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCcccc--CCCCC-CceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 6799999999998652 25778 99999999999999999999999999 99999999863 358999999999775
Q ss_pred ccccCCCCCCCceeEEEEEEcccccC---CceEeeeEecee
Q 046822 676 KNIINNSGGRDSRIGKVRIRLSTLES---DRVYTHSYPLLM 713 (971)
Q Consensus 676 ~~~~~~~~~~d~~iG~~~i~l~~l~~---~~~~~~~~~L~~ 713 (971)
+|++||++.++|.++.. +.....||+|.+
T Consensus 78 ---------~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 78 ---------ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ---------CCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 89999999999999966 445788999974
No 90
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.66 E-value=8.3e-16 Score=142.48 Aligned_cols=102 Identities=24% Similarity=0.333 Sum_probs=89.9
Q ss_pred ceeEEEEEEEEeecCCCCCCCCeEEEEEECCeeeeeeeecCC-CCccccEEEEeccCC----CcceEEEEEecC---CCC
Q 046822 270 QMQYLYVRVVKARDISLFGGGEIVAEVKLGNYRGITKRVSSN-HLQWDQVFAFSKDCI----QSSAAEIFVKES---DKD 341 (971)
Q Consensus 270 ~~~~L~V~v~~a~~L~~~~~~dpyV~v~~~~~~~kT~~~~~~-nP~wne~f~f~~~~~----~~~~l~v~v~D~---~~d 341 (971)
+++.|+|+|++|++|+ .|.+||||+|++++++.+|++++++ ||.|||+|.|.+... .+..|.|.|||. +++
T Consensus 2 ~~~~l~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~ 80 (111)
T cd04011 2 QDFQVRVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSD 80 (111)
T ss_pred CcEEEEEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccC
Confidence 5689999999999998 7889999999999999999999999 999999999997643 346899999997 679
Q ss_pred cccEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 046822 342 DFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDR 374 (971)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 374 (971)
++||++.++|+++... +++.+.++||+|.++
T Consensus 81 ~~iG~~~i~l~~v~~~--~~~~~~~~w~~L~~~ 111 (111)
T cd04011 81 TLIGSFKLDVGTVYDQ--PDHAFLRKWLLLTDP 111 (111)
T ss_pred CccEEEEECCccccCC--CCCcceEEEEEeeCc
Confidence 9999999999999764 346788899999874
No 91
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.66 E-value=1.7e-15 Score=145.09 Aligned_cols=118 Identities=24% Similarity=0.372 Sum_probs=99.6
Q ss_pred eeEEEEEEEeeeCCCCCCcc-------CCCCcccCcEEEEEECCEE-EeeecccCCCCCeecceeEEEeeCCCcEEEEEE
Q 046822 597 IGVLEMGILGATGLMPMKFK-------EGKGGSVDAYCVAKYGQKW-VRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGV 668 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~-------~~~g~s~dpy~~~~~g~~~-~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V 668 (971)
.|.|+|+|++|+||...+.. .+.|.+ ||||++.++++. .+|+++.+++||.|||.|.|.+. ....|.|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~-dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v 80 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLL-DPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTV 80 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCc-CcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEE
Confidence 58999999999999876541 013678 999999998765 69999999999999999999997 456899999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccC--CceEeeeEeceecCCCCcccceEEEEEEEEee
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLES--DRVYTHSYPLLMLHPSGVKKMGELHLAVRFSC 733 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 733 (971)
||++.++ +|++||++.++|+++.. +.....||+|. +.|+|++.+.+..
T Consensus 81 ~d~~~~~---------~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 81 FHDAAIG---------PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred EeCCCCC---------CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 9998665 78999999999999876 55668999995 2499999998864
No 92
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.65 E-value=8.2e-16 Score=140.90 Aligned_cols=103 Identities=23% Similarity=0.380 Sum_probs=92.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCCceEEEEEECCeEEEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEEEEeCcC
Q 046822 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVG 509 (971)
Q Consensus 430 L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d~d~ 509 (971)
|.|+|++|++|+..+.. +.+||||+++++++.+||+++ .++.||.|||.|.|.+..+..+.|.|+|||.+.
T Consensus 2 L~V~v~~A~~L~~~~~~----~~~dpyv~v~~~~~~~kT~v~-----~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~ 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKST----KEPSPYVELTVGKTTQKSKVK-----ERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT 72 (105)
T ss_pred EEEEEeeecCCCCcccC----CCCCcEEEEEECCEEEeCccc-----cCCCCCcccceEEEEeCCCCCCEEEEEEEECCC
Confidence 78999999999998876 899999999999999999999 889999999999999998888899999999864
Q ss_pred CCCCceeEEEEEeccccccccccccccceeEEcccCC
Q 046822 510 PGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHF 546 (971)
Q Consensus 510 ~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~ 546 (971)
+++||++.++|.++.... ....+.||+|++.+
T Consensus 73 ---~~~iG~~~i~l~~l~~~~--~~~~~~w~~L~~~g 104 (105)
T cd04050 73 ---GKSLGSLTLPLSELLKEP--DLTLDQPFPLDNSG 104 (105)
T ss_pred ---CCccEEEEEEHHHhhccc--cceeeeeEecCCCC
Confidence 889999999999987653 34578999998653
No 93
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.65 E-value=8.5e-16 Score=148.35 Aligned_cols=101 Identities=21% Similarity=0.263 Sum_probs=86.1
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-----EEEeeecccCCCCCeecceeEEEee---------------
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-----KWVRTRTVVDSLSPKWNEQYTWEVF--------------- 658 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-----~~~rT~~~~~~~nP~Wne~~~~~v~--------------- 658 (971)
.|.|+|++|+||+. . .|.+ ||||++.+++ ...||+++++++||+|||.|.|++.
T Consensus 1 kL~V~Vi~ArnL~~--~---~g~s-DPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~ 74 (148)
T cd04010 1 KLSVRVIECSDLAL--K---NGTC-DPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEE 74 (148)
T ss_pred CEEEEEEeCcCCCC--C---CCCC-CceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcc
Confidence 37899999999986 2 5788 9999999965 5689999999999999999999995
Q ss_pred CCC-cEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCC-ceEeeeEeceec
Q 046822 659 DPC-TVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESD-RVYTHSYPLLML 714 (971)
Q Consensus 659 ~~~-~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~-~~~~~~~~L~~~ 714 (971)
+.. ..|.|.|||++.++ +|++||++.|+|..+..+ .....||+|...
T Consensus 75 ~~~~~~L~i~V~d~~~~~---------~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 75 DAEKLELRVDLWHASMGG---------GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred cccEEEEEEEEEcCCCCC---------CCceeEEEEEecccccccCCcCcceeecCCc
Confidence 112 37999999998664 899999999999999876 456899999754
No 94
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.65 E-value=2.2e-15 Score=143.35 Aligned_cols=118 Identities=20% Similarity=0.384 Sum_probs=100.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC---eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK---QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSS 83 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~ 83 (971)
.|.|+|++|++|+..+..+.+||||++.+.+ ..++|+++++++||.|||+|.|.+.... ...|.|+|||++..+
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~---~~~L~i~v~d~d~~~ 78 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGE---PLWISATVWDRSFVG 78 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCC---CCEEEEEEEECCCCC
Confidence 6899999999999999999999999999874 3689999999999999999999987642 378999999999876
Q ss_pred CCCceeEEEEEeCccccccC-CcccceEEEeEeCCCCCeeeeEEEEEEEeeec
Q 046822 84 NSRNFLGKVRAPCSQLCKNE-GEATAQLYTLEKRSLFSHIRGEISLKLFVSTT 135 (971)
Q Consensus 84 ~~d~~lG~~~i~l~~l~~~~-~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~ 135 (971)
++++||++.++++.+.... +.....|++|.+ +|.+.+++.+...
T Consensus 79 -~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-------~g~i~l~~~~~~~ 123 (126)
T cd04043 79 -KHDLCGRASLKLDPKRFGDDGLPREIWLDLDT-------QGRLLLRVSMEGE 123 (126)
T ss_pred -CCceEEEEEEecCHHHcCCCCCCceEEEEcCC-------CCeEEEEEEEeee
Confidence 7999999999999875433 444568999964 4889888887654
No 95
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.65 E-value=1.2e-15 Score=144.81 Aligned_cols=120 Identities=23% Similarity=0.347 Sum_probs=98.7
Q ss_pred eEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEcC--eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCC
Q 046822 6 EKLVVEVIAAHNLMPKD-GEGSSSPFVEVEFEK--QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRS 82 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d-~~g~~dPyv~v~~~~--~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~ 82 (971)
|.|.|+|++|++|+..+ ..+.+||||++++++ +.++|+++.++.||.|||.|.|.+.... +.|.|+|||++..
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~----~~l~~~v~d~~~~ 77 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLT----EPLNLTVYDFNDK 77 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCC----CEEEEEEEecCCC
Confidence 68999999999999655 356799999999998 7899999999999999999999987433 7999999999987
Q ss_pred CCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 83 SNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 83 ~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
+ +|++||++.+++.++...... ...|+.|.. .++..|+|++++.|.+
T Consensus 78 ~-~d~~iG~~~~~l~~l~~~~~~-~~~~~~~~~---~~k~~G~i~~~l~~~p 124 (124)
T cd04044 78 R-KDKLIGTAEFDLSSLLQNPEQ-ENLTKNLLR---NGKPVGELNYDLRFFP 124 (124)
T ss_pred C-CCceeEEEEEEHHHhccCccc-cCcchhhhc---CCccceEEEEEEEeCC
Confidence 6 799999999999999754332 123455543 2346799999998863
No 96
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.65 E-value=7.1e-16 Score=145.54 Aligned_cols=108 Identities=31% Similarity=0.381 Sum_probs=92.0
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc---CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE---KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
..+.|.|+|++|+||++++..|.+||||++.+. .++++|+++++ +||+|||+|.|.....+++....|.|.|||++
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~ 92 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE 92 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECC
Confidence 467899999999999999988999999998774 35789999888 99999999999844345566789999999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCcccceEEEeEe
Q 046822 81 RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEK 115 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~ 115 (971)
.++ ++++||++.|+|+++.. +.....||+|++
T Consensus 93 ~~~-~~~~lG~~~i~L~~l~~--~~~~~~w~~L~p 124 (124)
T cd08389 93 RMR-KERLIGEKVVPLSQLNL--EGETTVWLTLEP 124 (124)
T ss_pred Ccc-cCceEEEEEEeccccCC--CCCceEEEeCCC
Confidence 986 79999999999999954 234568999974
No 97
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.65 E-value=6.7e-16 Score=142.97 Aligned_cols=99 Identities=29% Similarity=0.433 Sum_probs=86.1
Q ss_pred eEEEEEEEeeeCCCCCCccCCC-CcccCcEEEEEEC---CEEEeeecccCCCCCeecceeEEEeeCC----CcEEEEEEE
Q 046822 598 GVLEMGILGATGLMPMKFKEGK-GGSVDAYCVAKYG---QKWVRTRTVVDSLSPKWNEQYTWEVFDP----CTVITVGVF 669 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~-g~s~dpy~~~~~g---~~~~rT~~~~~~~nP~Wne~~~~~v~~~----~~~l~i~V~ 669 (971)
|.|+|+|++|+||+.++. . |.+ ||||++.+. ...++|+++++++||.|||.|.|.+..+ ...|.|+||
T Consensus 1 G~L~V~v~~a~~L~~~d~---~~~~~-Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~ 76 (111)
T cd04041 1 GVLVVTIHRATDLPKADF---GTGSS-DPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLW 76 (111)
T ss_pred CEEEEEEEEeeCCCcccC---CCCCC-CccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEE
Confidence 789999999999998754 5 788 999999983 3568999999999999999999988753 458999999
Q ss_pred eCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 670 DNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 670 D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
|+|.++ +|++||++.+++++|... .+|+++.
T Consensus 77 d~d~~~---------~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 77 DSDRFT---------ADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred eCCCCC---------CCCcceEEEEEHHHHhcC---CCCCccc
Confidence 999775 899999999999999754 4899876
No 98
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.65 E-value=1.5e-15 Score=143.35 Aligned_cols=118 Identities=24% Similarity=0.320 Sum_probs=94.5
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-CEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCccc
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-QKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNI 678 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~~ 678 (971)
|+|+|++|++|+.++ ..|.+ ||||++.++ .+.+||+++.+++||.|||.|.|++.. ...|+|+|||++.++
T Consensus 2 l~v~v~~A~~L~~~~---~~~~~-dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~--- 73 (123)
T cd08382 2 VRLTVLCADGLAKRD---LFRLP-DPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFK--- 73 (123)
T ss_pred eEEEEEEecCCCccC---CCCCC-CcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCC---
Confidence 789999999998764 47888 999999996 678999999999999999999999975 679999999998764
Q ss_pred cCCCCCCCceeEEEEEEcccccCCce-EeeeEeceecCCCC-cccceEEEEEE
Q 046822 679 INNSGGRDSRIGKVRIRLSTLESDRV-YTHSYPLLMLHPSG-VKKMGELHLAV 729 (971)
Q Consensus 679 ~~~~~~~d~~iG~~~i~l~~l~~~~~-~~~~~~L~~~~~~g-~~~~G~i~l~~ 729 (971)
...|++||++.++++++..... ...||+|....... ....|+|.+.+
T Consensus 74 ----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 74 ----KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred ----CCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 1126899999999999864432 25699997554321 12258888765
No 99
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.64 E-value=9.2e-16 Score=145.36 Aligned_cols=107 Identities=28% Similarity=0.480 Sum_probs=92.5
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc---CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE---KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
..+.|.|+|++|+||++++..|.+||||++.+. .+.++|+++++++||.|||+|.|.+... ++....|.|+|||++
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~-~l~~~~l~i~V~d~~ 92 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQ-ELPKRTLEVLLYDFD 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHH-HhCCCEEEEEEEECC
Confidence 457899999999999999999999999999995 3478999999999999999999998743 344578999999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 81 RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
.++ ++++||++.++++++...+ ....||+|+
T Consensus 93 ~~~-~~~~iG~~~i~l~~~~~~~--~~~~W~~l~ 123 (124)
T cd08387 93 QFS-RDECIGVVELPLAEVDLSE--KLDLWRKIQ 123 (124)
T ss_pred CCC-CCceeEEEEEecccccCCC--CcceEEECc
Confidence 876 7999999999999997533 446899985
No 100
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.64 E-value=1.6e-15 Score=142.57 Aligned_cols=114 Identities=25% Similarity=0.349 Sum_probs=98.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCCceEEEEEEC---CeEEEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEEEEe
Q 046822 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVG---NQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVED 506 (971)
Q Consensus 430 L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g---~~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d 506 (971)
|+|+|++|++|+..+.. +.+||||++.++ .+.+||+++ +++.||.|||.|.|.+..+..+.|.|+|||
T Consensus 2 L~V~vi~a~~L~~~~~~----~~~Dpyv~v~~~~~~~~~~kT~vv-----~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d 72 (119)
T cd04036 2 LTVRVLRATNITKGDLL----STPDCYVELWLPTASDEKKRTKTI-----KNSINPVWNETFEFRIQSQVKNVLELTVMD 72 (119)
T ss_pred eEEEEEEeeCCCccCCC----CCCCcEEEEEEcCCCCccCcccee-----cCCCCCccceEEEEEeCcccCCEEEEEEEE
Confidence 78999999999998876 799999999996 368899999 889999999999999987766789999999
Q ss_pred CcCCCCCceeEEEEEeccccccccccccccceeEEcccCCCCCCCcceeeeeeeeeEEEEEcc
Q 046822 507 HVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLD 569 (971)
Q Consensus 507 ~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~g~i~l~l~l~ 569 (971)
++.. ++++||++.++++++... .....||+|...+ +|++++++.++
T Consensus 73 ~d~~-~~~~iG~~~~~l~~l~~g----~~~~~~~~L~~~~------------~g~l~~~~~~~ 118 (119)
T cd04036 73 EDYV-MDDHLGTVLFDVSKLKLG----EKVRVTFSLNPQG------------KEELEVEFLLE 118 (119)
T ss_pred CCCC-CCcccEEEEEEHHHCCCC----CcEEEEEECCCCC------------CceEEEEEEee
Confidence 9877 899999999999998754 2458999998764 57888887653
No 101
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.64 E-value=1.7e-15 Score=143.24 Aligned_cols=105 Identities=21% Similarity=0.217 Sum_probs=87.3
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-----CEEEeeecccCCCCCeecceeEEEeeCC---CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-----QKWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-----~~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i 666 (971)
...+.|.|+|++|+||++++. ..|.+ ||||++.+. ..+.||+++.+++||+|||.|.|++... ...|.|
T Consensus 12 ~~~~~L~V~V~~a~nL~~~d~--~~g~~-dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v 88 (128)
T cd08392 12 FRTSCLEITIKACRNLAYGDE--KKKKC-HPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQV 88 (128)
T ss_pred CCCCEEEEEEEecCCCCccCC--CCCCC-CeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEE
Confidence 345799999999999998643 13788 999999983 2367999999999999999999998642 459999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCC---ceEeeeEec
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESD---RVYTHSYPL 711 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~---~~~~~~~~L 711 (971)
.|||.+.++ ++++||++.|+|+++... ....+||+|
T Consensus 89 ~V~~~~~~~---------~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 89 SVWHSRTLK---------RRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEEeCCCCc---------CcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 999999765 899999999999998543 356789997
No 102
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.64 E-value=1.3e-15 Score=144.48 Aligned_cols=107 Identities=34% Similarity=0.513 Sum_probs=92.0
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC---eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK---QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
..+.|.|+|++|+||+.++..|.+||||++.+.+ ..++|+++++++||.|||+|.|.+... ++....|.|+|||++
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~-~l~~~~l~~~V~d~d 92 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYS-ELGNKTLVFSVYDFD 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHH-HhCCCEEEEEEEeCC
Confidence 4678999999999999999889999999999863 467999999999999999999998642 334578999999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 81 RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
.++ ++++||++.++++++.. +....+|++|+
T Consensus 93 ~~~-~~~~lG~~~i~l~~~~~--~~~~~~W~~l~ 123 (124)
T cd08385 93 RFS-KHDLIGEVRVPLLTVDL--GHVTEEWRDLE 123 (124)
T ss_pred CCC-CCceeEEEEEecCcccC--CCCcceEEEcc
Confidence 986 78999999999999854 33446899986
No 103
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.64 E-value=2.7e-15 Score=142.26 Aligned_cols=105 Identities=27% Similarity=0.336 Sum_probs=90.5
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC---CEEEeeecccCCCCCeecceeEEEeeCC---CcEEEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---QKWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITVGV 668 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g---~~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i~V 668 (971)
...|.|.|+|++|+||+..+ ..|.+ ||||++.+. .+.+||++++++.||.|||.|.|.+... ...|.|+|
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d---~~~~~-dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V 88 (124)
T cd08385 13 FQSNQLTVGIIQAADLPAMD---MGGTS-DPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSV 88 (124)
T ss_pred CCCCEEEEEEEEeeCCCCcc---CCCCC-CCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEE
Confidence 34578999999999999765 36788 999999984 3468999999999999999999998742 35899999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
||++.++ +|++||++.++|+++..+...++|++|.
T Consensus 89 ~d~d~~~---------~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 89 YDFDRFS---------KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred EeCCCCC---------CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9999775 8899999999999998777778999885
No 104
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.63 E-value=1.4e-15 Score=144.36 Aligned_cols=108 Identities=30% Similarity=0.445 Sum_probs=91.9
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc---CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE---KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
..+.|.|+|++|+||+.++..+.+||||++.+. ++.++|++++++.||.|||+|.|.+...+.+....|.|+|||++
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d 93 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence 467899999999999999988999999999994 46789999999999999999999854333344578999999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 81 RSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
.++ ++++||++.++++++.. ......|+.|.
T Consensus 94 ~~~-~~~~iG~~~i~l~~l~~--~~~~~~W~~l~ 124 (125)
T cd08386 94 RFS-RNDPIGEVSLPLNKVDL--TEEQTFWKDLK 124 (125)
T ss_pred CCc-CCcEeeEEEEecccccC--CCCcceEEecC
Confidence 876 78999999999999864 23345899986
No 105
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.63 E-value=1.2e-15 Score=144.88 Aligned_cols=119 Identities=24% Similarity=0.359 Sum_probs=99.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-eEEEeeccc-CCCCCeeeeeeEEecCCCC-CCCcceEEEEEEeCCCCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-QILRTQVKY-KDLNPIWNEKLVFDVPDIA-ELPYKHIEVNVFNERRSS 83 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~-~t~nP~wne~f~f~v~~~~-~l~~~~L~i~V~d~~~~~ 83 (971)
+|+|+|++|++|+..+..+.+||||+|++++ +.++|++.. ++.||.|||.|.|.+.... ......|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999998889999999999998 889999975 5899999999999987652 012378999999999876
Q ss_pred CCCceeEEEEEeCccccccCCc---ccceEEEeEeCCCCCeeeeEEEE
Q 046822 84 NSRNFLGKVRAPCSQLCKNEGE---ATAQLYTLEKRSLFSHIRGEISL 128 (971)
Q Consensus 84 ~~d~~lG~~~i~l~~l~~~~~~---~~~~w~~L~~~~~~~~~~G~i~l 128 (971)
+|++||++.+++.++...... ....||+|..++ ++.+|.|.+
T Consensus 81 -~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g~~~G~~~~ 125 (125)
T cd04051 81 -GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--GKPQGVLNF 125 (125)
T ss_pred -CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--CCcCeEEeC
Confidence 799999999999999754432 346899999765 467898864
No 106
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=4.4e-15 Score=141.34 Aligned_cols=118 Identities=19% Similarity=0.277 Sum_probs=99.4
Q ss_pred EEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCCceeEE
Q 046822 12 VIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGK 91 (971)
Q Consensus 12 V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d~~lG~ 91 (971)
|++|++|+. ..|.+||||++.++++.++|++++++.||+|||+|.|.+.... .....|.|+|||++..+ +|++||+
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~-~~~~~l~~~v~d~~~~~-~d~~iG~ 77 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSP-DPDESLEIVVKDYEKVG-RNRLIGS 77 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCc-CCCCEEEEEEEECCCCC-CCceEEE
Confidence 789999998 5789999999999999999999999999999999999987542 23589999999999876 7899999
Q ss_pred EEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeecc
Q 046822 92 VRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTTE 136 (971)
Q Consensus 92 ~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 136 (971)
+.++++++... .....|++|.+.... ...|+|.+.+.|.+..
T Consensus 78 ~~~~l~~l~~~--~~~~~~~~L~~~~~~-~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 78 ATVSLQDLVSE--GLLEVTEPLLDSNGR-PTGATISLEVSYQPPD 119 (127)
T ss_pred EEEEhhHcccC--CceEEEEeCcCCCCC-cccEEEEEEEEEeCCC
Confidence 99999999753 334579999865442 4579999999987543
No 107
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=5.2e-15 Score=140.80 Aligned_cols=113 Identities=22% Similarity=0.341 Sum_probs=97.5
Q ss_pred EEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCC---CcEEEEEEEeCCCCCccccC
Q 046822 604 ILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITVGVFDNCSLDKNIIN 680 (971)
Q Consensus 604 v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i~V~D~~~~~~~~~~ 680 (971)
|++|++|+. ..|++ ||||++.+++..++|++++++.||.|||.|.|++.++ ...|.|+|||++.++
T Consensus 2 vi~a~~L~~-----~~g~~-Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~----- 70 (127)
T cd08373 2 VVSLKNLPG-----LKGKG-DRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG----- 70 (127)
T ss_pred eEEeeCCcc-----cCCCC-CCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC-----
Confidence 688999986 26788 9999999999999999999999999999999999764 569999999999765
Q ss_pred CCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEee
Q 046822 681 NSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSC 733 (971)
Q Consensus 681 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 733 (971)
+|++||++.++|+++..+.....|++|...+. ....|+|++++.|..
T Consensus 71 ----~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~--~~~~~~l~l~~~~~~ 117 (127)
T cd08373 71 ----RNRLIGSATVSLQDLVSEGLLEVTEPLLDSNG--RPTGATISLEVSYQP 117 (127)
T ss_pred ----CCceEEEEEEEhhHcccCCceEEEEeCcCCCC--CcccEEEEEEEEEeC
Confidence 89999999999999988887889999975433 223599999999863
No 108
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.62 E-value=2.4e-15 Score=145.37 Aligned_cols=107 Identities=23% Similarity=0.351 Sum_probs=90.5
Q ss_pred EEEEEEEEeeCCCCCCCCC--------------CCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceE
Q 046822 7 KLVVEVIAAHNLMPKDGEG--------------SSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHI 72 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g--------------~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L 72 (971)
.|.|+|++|++|+.+|..+ .+||||+|.+++++.+|+++++++||+|||+|.|.+..+.. ...|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~--~~~l 78 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPL--CERI 78 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCc--CCEE
Confidence 4789999999999988543 68999999999999999999999999999999999754321 3689
Q ss_pred EEEEEeCCCCCCCCceeEEEEEeCccccccCCc-----ccceEEEeEeC
Q 046822 73 EVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGE-----ATAQLYTLEKR 116 (971)
Q Consensus 73 ~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~-----~~~~w~~L~~~ 116 (971)
.|+|||++..+ +|++||++.+++.++...+.+ ....|+.|...
T Consensus 79 ~~~v~D~d~~~-~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 79 KIQIRDWDRVG-NDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred EEEEEECCCCC-CCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 99999999986 799999999999998765432 23578888754
No 109
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.62 E-value=2.8e-15 Score=142.78 Aligned_cols=108 Identities=31% Similarity=0.442 Sum_probs=91.8
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc-----CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE-----KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+..+..+.+||||++.+. ...++|++++++.||.|||+|.|.+... .+....|.|.|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~-~l~~~~l~i~v~~ 92 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLE-ELKRRTLDVAVKN 92 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHH-HhcCCEEEEEEEE
Confidence 457899999999999999988999999999996 3578999999999999999999998643 3445799999999
Q ss_pred CCCC-CCCCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 79 ERRS-SNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 79 ~~~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
++.+ .+++++||++.+++.++... .....||+|+
T Consensus 93 ~~~~~~~~~~~iG~~~i~l~~l~~~--~~~~~W~~L~ 127 (127)
T cd04030 93 SKSFLSREKKLLGQVLIDLSDLDLS--KGFTQWYDLT 127 (127)
T ss_pred CCcccCCCCceEEEEEEeccccccc--CCccceEECc
Confidence 9875 23799999999999998543 3446899984
No 110
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.62 E-value=4.4e-15 Score=141.46 Aligned_cols=107 Identities=21% Similarity=0.243 Sum_probs=90.1
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-----CEEEeeecccCCCCCeecceeEEEeeCC---CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-----QKWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-----~~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i 666 (971)
+..+.|.|+|++|+||+..+. .|.+ ||||++.+. ...+||++++++.||.|||.|.|.+... ...|.|
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~---~~~~-dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i 88 (127)
T cd04030 13 SQRQKLIVTVHKCRNLPPCDS---SDIP-DPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDV 88 (127)
T ss_pred CCCCEEEEEEEEEECCCCccC---CCCC-CceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEE
Confidence 345789999999999998653 6788 999999984 4578999999999999999999998642 358999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
.|||++.+. .++|++||++.|+|.++..+.....||+|.
T Consensus 89 ~v~~~~~~~-------~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 89 AVKNSKSFL-------SREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred EEEECCccc-------CCCCceEEEEEEecccccccCCccceEECc
Confidence 999998641 137999999999999998777778999883
No 111
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.62 E-value=4.4e-15 Score=141.09 Aligned_cols=104 Identities=25% Similarity=0.308 Sum_probs=85.7
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-----EEEeeecccCCCCCeecceeEEEeeC----CCcEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-----KWVRTRTVVDSLSPKWNEQYTWEVFD----PCTVIT 665 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-----~~~rT~~~~~~~nP~Wne~~~~~v~~----~~~~l~ 665 (971)
+..|.|.|+|++|+||+.++. .|.+ ||||++.+++ ...||++++++.||.|||.|.|++.. ....|.
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~---~~~~-dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~ 88 (125)
T cd04031 13 KVTSQLIVTVLQARDLPPRDD---GSLR-NPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLE 88 (125)
T ss_pred CCCCEEEEEEEEecCCCCcCC---CCCC-CCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEE
Confidence 344789999999999998654 6778 9999999853 56899999999999999999999754 245899
Q ss_pred EEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 666 VGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 666 i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
|+|||++.++ ++++||++.++|++.... ....||+|.
T Consensus 89 ~~V~d~~~~~---------~~~~iG~~~i~l~~~~~~-~~~~W~~L~ 125 (125)
T cd04031 89 VTVWDYDRDG---------ENDFLGEVVIDLADALLD-DEPHWYPLQ 125 (125)
T ss_pred EEEEeCCCCC---------CCcEeeEEEEeccccccc-CCcceEECc
Confidence 9999999765 899999999999984222 226899983
No 112
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.62 E-value=3.5e-15 Score=139.43 Aligned_cols=101 Identities=21% Similarity=0.322 Sum_probs=85.9
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-----EEEeeecccCCCCCeecceeEEEeeC--CCcEEEEEEEe
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-----KWVRTRTVVDSLSPKWNEQYTWEVFD--PCTVITVGVFD 670 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-----~~~rT~~~~~~~nP~Wne~~~~~v~~--~~~~l~i~V~D 670 (971)
+.|.|+|++|+||++++ .|.+ ||||++.+.+ ...||+++.++.||.|||.|.|++.. ....|.|+|||
T Consensus 12 ~~L~V~Vi~ar~L~~~~----~g~~-dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~ 86 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN----SGTC-NSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWN 86 (119)
T ss_pred CEEEEEEEEEECCCCCC----CCCC-CeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEEC
Confidence 68999999999998764 5778 9999999942 35799999999999999999999864 33478999999
Q ss_pred CCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEec
Q 046822 671 NCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPL 711 (971)
Q Consensus 671 ~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 711 (971)
.+... ..+++||.+.|+|.++..+.....||+|
T Consensus 87 ~~~~~--------~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 87 KLSKS--------RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCCc--------CCCEEEEEEEecHHHhccCccccceEeC
Confidence 98543 2578999999999999877777899986
No 113
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.61 E-value=4.7e-15 Score=140.84 Aligned_cols=105 Identities=25% Similarity=0.336 Sum_probs=89.7
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE---CCEEEeeecccCCCCCeecceeEEEeeC----CCcEEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY---GQKWVRTRTVVDSLSPKWNEQYTWEVFD----PCTVITVG 667 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~---g~~~~rT~~~~~~~nP~Wne~~~~~v~~----~~~~l~i~ 667 (971)
+..+.|.|+|++|+||+.++ ..|.+ ||||++.+ ++...||++++++.||.|||.|.|++.. ....|.++
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d---~~~~~-dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~ 88 (125)
T cd08386 13 FQESTLTLKILKAVELPAKD---FSGTS-DPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQ 88 (125)
T ss_pred CCCCEEEEEEEEecCCCCcc---CCCCC-CceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEE
Confidence 34578999999999998764 36788 99999998 3567899999999999999999998542 23479999
Q ss_pred EEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 668 VFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
|||++.++ ++++||++.++|+++..+.....||+|.
T Consensus 89 v~d~d~~~---------~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 89 VLDYDRFS---------RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred EEeCCCCc---------CCcEeeEEEEecccccCCCCcceEEecC
Confidence 99999765 8899999999999998887788999885
No 114
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.61 E-value=2.5e-15 Score=148.24 Aligned_cols=109 Identities=28% Similarity=0.359 Sum_probs=92.6
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc-----CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE-----KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+.++..|.+||||++.+. .+.++|+++++++||.|||+|.|.+...+++....|.|.|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 468999999999999999989999999999984 357899999999999999999998654444555789999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEe
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEK 115 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~ 115 (971)
++.++ ++++||++.+++.++...+. ...||.|..
T Consensus 105 ~d~~~-~d~~lG~v~i~l~~~~~~~~--~~~w~~~~~ 138 (162)
T cd04020 105 HDKLS-SNDFLGGVRLGLGTGKSYGQ--AVDWMDSTG 138 (162)
T ss_pred CCCCC-CCceEEEEEEeCCccccCCC--ccccccCCh
Confidence 99986 79999999999999865432 357888754
No 115
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.61 E-value=9.2e-15 Score=140.80 Aligned_cols=90 Identities=31% Similarity=0.520 Sum_probs=83.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNS 85 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~ 85 (971)
|.|+|+|++|+||+..+. +.+||||+++++++.++|++++++.||.|||+|.|.+.++. ..|.|+|||++.++ +
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~----~~l~~~V~D~d~~~-~ 75 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPM----APLKLEVFDKDTFS-K 75 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCC----CEEEEEEEECCCCC-C
Confidence 789999999999999887 89999999999999999999999999999999999998764 79999999999987 7
Q ss_pred CceeEEEEEeCccccc
Q 046822 86 RNFLGKVRAPCSQLCK 101 (971)
Q Consensus 86 d~~lG~~~i~l~~l~~ 101 (971)
|++||++.+++.++..
T Consensus 76 dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 76 DDSMGEAEIDLEPLVE 91 (145)
T ss_pred CCEEEEEEEEHHHhhh
Confidence 9999999999999853
No 116
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.61 E-value=6.1e-15 Score=139.69 Aligned_cols=105 Identities=21% Similarity=0.306 Sum_probs=88.8
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC--C---EEEeeecccCCCCCeecceeEEEeeCC---CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG--Q---KWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g--~---~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i 666 (971)
...|.|.|+|++|+||+.++. ..|.+ ||||++.+. + ...+|+++.++.||.|||.|.|++... ...|.|
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~--~~~~~-dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i 87 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADE--KKKRS-NPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQL 87 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCC--CCCCC-CcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEE
Confidence 345789999999999998651 35778 999999983 1 458999999999999999999998752 458999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEec
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPL 711 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 711 (971)
+|||++.++ ++++||++.++|+++..+...+.||+|
T Consensus 88 ~v~d~~~~~---------~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 88 SVWHHDRFG---------RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEEeCCCCc---------CCceeeEEEEecccccccCCCccEEEC
Confidence 999999765 889999999999999776667899987
No 117
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.61 E-value=3.4e-15 Score=142.39 Aligned_cols=93 Identities=31% Similarity=0.448 Sum_probs=82.0
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+..+..|.+||||++.+.. .+++|+++++++||+|||+|.|.+.. +++....|.|.|||
T Consensus 13 ~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~-~~l~~~~l~~~V~~ 91 (136)
T cd08406 13 TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPA-IVLQDLSLRVTVAE 91 (136)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCH-HHhCCcEEEEEEEe
Confidence 3568999999999999999899999999999963 25689999999999999999999875 34667899999999
Q ss_pred CCCCCCCCceeEEEEEeCcc
Q 046822 79 ERRSSNSRNFLGKVRAPCSQ 98 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~ 98 (971)
++.++ ++++||++.+....
T Consensus 92 ~d~~~-~~~~iG~v~lg~~~ 110 (136)
T cd08406 92 STEDG-KTPNVGHVIIGPAA 110 (136)
T ss_pred CCCCC-CCCeeEEEEECCCC
Confidence 99987 79999999997654
No 118
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.61 E-value=3.1e-15 Score=142.45 Aligned_cols=93 Identities=26% Similarity=0.387 Sum_probs=81.5
Q ss_pred CCeEEEEEEEEeeCCCCCCC--CCCCCcEEEEEEcCe-----EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDG--EGSSSPFVEVEFEKQ-----ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNV 76 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~--~g~~dPyv~v~~~~~-----~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V 76 (971)
..+.|.|.|++|+||..+|. .+.+||||+|.+..+ +++|+++++++||+|||+|.|.+.. +++....|.|+|
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~-~~L~~~~L~~~V 91 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPS-ELLAASSVELEV 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCH-HHhCccEEEEEE
Confidence 46789999999999999983 356999999999742 5789999999999999999999874 456678999999
Q ss_pred EeCCCCCCCCceeEEEEEeCcc
Q 046822 77 FNERRSSNSRNFLGKVRAPCSQ 98 (971)
Q Consensus 77 ~d~~~~~~~d~~lG~~~i~l~~ 98 (971)
||++.++ ++++||++.+++..
T Consensus 92 ~d~d~~~-~~d~iG~v~lg~~~ 112 (138)
T cd08407 92 LNQDSPG-QSLPLGRCSLGLHT 112 (138)
T ss_pred EeCCCCc-CcceeceEEecCcC
Confidence 9999987 89999999999865
No 119
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.60 E-value=4.1e-15 Score=141.21 Aligned_cols=113 Identities=26% Similarity=0.324 Sum_probs=94.3
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-EEEeeeccc-CCCCCeecceeEEEeeCC-----CcEEEEEEEeC
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-KWVRTRTVV-DSLSPKWNEQYTWEVFDP-----CTVITVGVFDN 671 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-~~~rT~~~~-~~~nP~Wne~~~~~v~~~-----~~~l~i~V~D~ 671 (971)
.|+|+|++|++|+..+. .|++ ||||++++++ +..+|+++. ++.||.|||.|.|.+.++ ...|.|+|||+
T Consensus 1 ~L~V~V~sA~~L~~~~~---~~~~-dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~ 76 (125)
T cd04051 1 TLEITIISAEDLKNVNL---FGKM-KVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCE 76 (125)
T ss_pred CEEEEEEEcccCCCCCc---ccCC-ceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEEC
Confidence 38899999999997643 6788 9999999987 889999985 589999999999999877 56999999999
Q ss_pred CCCCccccCCCCCCCceeEEEEEEcccccCCce-----EeeeEeceecCCCCcccceEEEE
Q 046822 672 CSLDKNIINNSGGRDSRIGKVRIRLSTLESDRV-----YTHSYPLLMLHPSGVKKMGELHL 727 (971)
Q Consensus 672 ~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~i~l 727 (971)
+.++ +|++||++.|+|.++..+.. ...||+|.... | +..|.|++
T Consensus 77 ~~~~---------~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g-~~~G~~~~ 125 (125)
T cd04051 77 RPSL---------GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--G-KPQGVLNF 125 (125)
T ss_pred CCCC---------CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--C-CcCeEEeC
Confidence 8664 89999999999999865443 36899998533 3 34598874
No 120
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.60 E-value=1.2e-14 Score=139.61 Aligned_cols=120 Identities=22% Similarity=0.389 Sum_probs=97.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECCeEEEeeecCCCCCCCCCCCcccceeEEEeecC---------CCCe
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEP---------FEDY 499 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~---------~~~~ 499 (971)
.|+|+|++|++|+.+|.. +.+||||++.++++..||+++ +++.||.|||.|.|.+... ....
T Consensus 2 ~l~v~V~~a~~L~~~d~~----g~~dpyv~v~~~~~~~kT~v~-----~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~ 72 (135)
T cd04017 2 QLRAYIYQARDLLAADKS----GLSDPFARVSFLNQSQETEVI-----KETLSPTWDQTLIFDEVELYGSPEEIAQNPPL 72 (135)
T ss_pred EEEEEEEEeecCcCCCCC----CCCCCEEEEEECCeeeEeeeE-----cCCCCCccCcEEEEeeeeccCChHHhhcCCCE
Confidence 589999999999999987 899999999999999999999 8999999999999975432 1247
Q ss_pred EEEEEEeCcCCCCCceeEEEEE-eccccccccccccccceeEEcccCCCCCCCcceeeeeeeeeEEEEEc
Q 046822 500 LLISVEDHVGPGKDEIVGKVLI-PVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSL 568 (971)
Q Consensus 500 L~v~V~d~d~~~~d~~iG~~~i-~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~g~i~l~l~l 568 (971)
|.|+|||++..+++++||++.+ ++..+... .......+||+|.... ...|+|++.+.+
T Consensus 73 l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~-~~~~~~~~W~~L~~~~----------~~~Geil~~~~~ 131 (135)
T cd04017 73 VVVELFDQDSVGKDEFLGRSVAKPLVKLDLE-EDFPPKLQWFPIYKGG----------QSAGELLAAFEL 131 (135)
T ss_pred EEEEEEeCcCCCCCccceEEEeeeeeecccC-CCCCCCceEEEeecCC----------CchhheeEEeEE
Confidence 9999999998888999999997 44434332 2345678999997543 246888887765
No 121
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.60 E-value=6.2e-15 Score=139.68 Aligned_cols=103 Identities=25% Similarity=0.430 Sum_probs=91.2
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccC-CCCCeecceeEEEeeCC----CcEEEEEEEeCC
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVD-SLSPKWNEQYTWEVFDP----CTVITVGVFDNC 672 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~-~~nP~Wne~~~~~v~~~----~~~l~i~V~D~~ 672 (971)
|.|+|+|++|+||+.++. .+++ ||||++++++..++|+++.+ +.||.|||.|.|.+..+ ...|.|+|||.+
T Consensus 1 g~L~V~V~~A~~L~~~~~---~~~~-dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~ 76 (124)
T cd04049 1 GTLEVLLISAKGLQDTDF---LGKI-DPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD 76 (124)
T ss_pred CeEEEEEEecCCCCCCCC---CCCc-CceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc
Confidence 689999999999987654 6788 99999999999999999875 89999999999999987 468999999999
Q ss_pred CCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 673 SLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 673 ~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
.++ +|++||++.++|+++..+...+.||+|..
T Consensus 77 ~~~---------~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 77 NFS---------DDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred cCC---------CCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 765 89999999999999977666688999873
No 122
>PLN03008 Phospholipase D delta
Probab=99.60 E-value=4.7e-15 Score=172.85 Aligned_cols=104 Identities=21% Similarity=0.334 Sum_probs=92.8
Q ss_pred CCcccCcEEEEEECCE-EEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcc
Q 046822 619 KGGSVDAYCVAKYGQK-WVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLS 697 (971)
Q Consensus 619 ~g~s~dpy~~~~~g~~-~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~ 697 (971)
.++| ||||+|.++++ ..||+++++++||+|||.|.|.+.++.+.|+|+|||+|.++ +++||++.|||.
T Consensus 74 ~~tS-DPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g----------aD~IG~a~IPL~ 142 (868)
T PLN03008 74 VITS-DPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG----------AQIIGTAKIPVR 142 (868)
T ss_pred cCCC-CceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC----------CceeEEEEEEHH
Confidence 4688 99999999865 57999999999999999999999999899999999999874 589999999999
Q ss_pred cccCCceEeeeEeceecCCCCcccceEEEEEEEEee
Q 046822 698 TLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSC 733 (971)
Q Consensus 698 ~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 733 (971)
+|..|...+.|++|.....+-.+..|+|+++++|..
T Consensus 143 ~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~p 178 (868)
T PLN03008 143 DIASGERISGWFPVLGASGKPPKAETAIFIDMKFTP 178 (868)
T ss_pred HcCCCCceEEEEEccccCCCCCCCCcEEEEEEEEEE
Confidence 999999899999999766544455689999999984
No 123
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.60 E-value=6.7e-15 Score=141.76 Aligned_cols=91 Identities=31% Similarity=0.551 Sum_probs=83.7
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCc
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDK 676 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~ 676 (971)
+|.|.|+|++|+||+..+ . +.+ ||||++++|++.++|++++++.||.|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d---~-~~s-DPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRD---F-TSS-DPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS- 74 (145)
T ss_pred CeEEEEEEEeeECCCCCC---C-CCc-CcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC-
Confidence 489999999999998754 3 678 9999999999999999999999999999999999999889999999999876
Q ss_pred cccCCCCCCCceeEEEEEEcccccC
Q 046822 677 NIINNSGGRDSRIGKVRIRLSTLES 701 (971)
Q Consensus 677 ~~~~~~~~~d~~iG~~~i~l~~l~~ 701 (971)
+|++||.+.+++.++..
T Consensus 75 --------~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 75 --------KDDSMGEAEIDLEPLVE 91 (145)
T ss_pred --------CCCEEEEEEEEHHHhhh
Confidence 89999999999998754
No 124
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.60 E-value=1.1e-14 Score=138.04 Aligned_cols=105 Identities=21% Similarity=0.228 Sum_probs=85.6
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC---CEEEeeecccCCCCCeecceeEEE-ee--C-CCcEEEEEE
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---QKWVRTRTVVDSLSPKWNEQYTWE-VF--D-PCTVITVGV 668 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g---~~~~rT~~~~~~~nP~Wne~~~~~-v~--~-~~~~l~i~V 668 (971)
..+.|.|+|++|+||+..+. ..|.+ ||||++.+. .+..||+++++++||.|||.|.|. +. + ....|.|+|
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~--~~~~~-DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDE--QSGTS-DPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred CCCEEEEEEEEeECCCCCCC--CCCCc-CCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 34789999999999998643 12778 999999984 446899999999999999999994 43 1 234799999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCC--ceEeeeEece
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESD--RVYTHSYPLL 712 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~--~~~~~~~~L~ 712 (971)
||+|.++ +|++||++.|+|+++... .....|.+|.
T Consensus 91 ~d~d~~~---------~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 91 LSFDRYS---------RDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EEcCCCC---------CCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9999775 899999999999998543 6677888764
No 125
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.60 E-value=5.5e-15 Score=138.43 Aligned_cols=104 Identities=19% Similarity=0.219 Sum_probs=88.2
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE--CC----EEEeeecccCCCCCeecceeEEEeeC---CCcEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY--GQ----KWVRTRTVVDSLSPKWNEQYTWEVFD---PCTVIT 665 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~--g~----~~~rT~~~~~~~nP~Wne~~~~~v~~---~~~~l~ 665 (971)
+..+.|.|+|++|+||++++ ..|.+ ||||++.+ +. .+.||+++++++||+|||.|.|++.. ....|.
T Consensus 11 ~~~~~L~V~V~~arnL~~~~---~~~~~-dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~ 86 (124)
T cd08680 11 SGDSSLVISVEQLRNLSALS---IPENS-KVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQ 86 (124)
T ss_pred CCCCEEEEEEeEecCCcccc---cCCCC-CeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEE
Confidence 45688999999999999874 36788 99999998 22 47999999999999999999999874 345999
Q ss_pred EEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCC-ceEeeeEec
Q 046822 666 VGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESD-RVYTHSYPL 711 (971)
Q Consensus 666 i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~-~~~~~~~~L 711 (971)
|+|||.+.++ ++++||.+.|+|+++... ....+||+|
T Consensus 87 ~~V~~~~~~~---------~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 87 VDVCSVGPDQ---------QEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEEeCCCCC---------ceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999998665 899999999999999544 346889976
No 126
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.59 E-value=7.3e-15 Score=137.76 Aligned_cols=94 Identities=20% Similarity=0.337 Sum_probs=82.9
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeC--CCcEEEEEEEeCC
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFD--PCTVITVGVFDNC 672 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~--~~~~l~i~V~D~~ 672 (971)
..+|.|+|+|++|+||+. +..|.+ ||||++.++++.+||+++++++||+|||.|.|.... ....|+|+|||++
T Consensus 25 ~~~~~L~V~V~~A~~L~~----d~~g~~-DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 25 RGLATLTVTVLRATGLWG----DYFTST-DGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred CCcEEEEEEEEECCCCCc----CcCCCC-CeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 678999999999999973 346788 999999999999999999999999999999998544 3569999999999
Q ss_pred CCCccccCCCCCCCceeEEEEEEcccccCC
Q 046822 673 SLDKNIINNSGGRDSRIGKVRIRLSTLESD 702 (971)
Q Consensus 673 ~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~ 702 (971)
.++ +|++||++.++|.....+
T Consensus 100 ~~s---------~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 100 NGW---------DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCC---------CCCeeEEEEEEecCCcee
Confidence 775 899999999999977644
No 127
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.59 E-value=2.1e-14 Score=138.59 Aligned_cols=118 Identities=21% Similarity=0.307 Sum_probs=93.5
Q ss_pred EEEEEEeeeC--CCCCCccCCCCcccCcEEEEEE-----CCEEEeeecccCCCCCeecceeEEEeeCC---------CcE
Q 046822 600 LEMGILGATG--LMPMKFKEGKGGSVDAYCVAKY-----GQKWVRTRTVVDSLSPKWNEQYTWEVFDP---------CTV 663 (971)
Q Consensus 600 L~v~v~~a~~--L~~~~~~~~~g~s~dpy~~~~~-----g~~~~rT~~~~~~~nP~Wne~~~~~v~~~---------~~~ 663 (971)
.+++|..|.| |+..+ ..|.+ ||||++.+ +.+.+||+++++|+||+|||.|.|.|... ...
T Consensus 4 ~el~i~~~~~~~l~~~~---~~~~~-DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~ 79 (155)
T cd08690 4 IELTIVRCIGIPLPSGW---NPKDL-DTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHG 79 (155)
T ss_pred eEEEEEEeeccccCCCc---CCCCC-CeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCc
Confidence 4566666666 66543 36778 99999986 35689999999999999999999999654 237
Q ss_pred EEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 664 ITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 664 l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
|.|+|||.+.+. .+|++||++.++|+.+..+.....|++|.... ....|+|++++|.-
T Consensus 80 L~~~V~d~~~f~--------~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~---k~~Gg~l~v~ir~r 137 (155)
T cd08690 80 LKFEVYHKGGFL--------RSDKLLGTAQVKLEPLETKCEIHESVDLMDGR---KATGGKLEVKVRLR 137 (155)
T ss_pred EEEEEEeCCCcc--------cCCCeeEEEEEEcccccccCcceEEEEhhhCC---CCcCCEEEEEEEec
Confidence 999999998763 37999999999999998776667899997321 12359999999865
No 128
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.59 E-value=6.6e-15 Score=139.45 Aligned_cols=106 Identities=25% Similarity=0.432 Sum_probs=90.1
Q ss_pred CCeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKD-GEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVF 77 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~ 77 (971)
..+.|.|+|++|+||+.++ ..+.+||||++.+.+ ..++|++++++.||.|||+|.|.+... ++....|.|.||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~-~l~~~~l~i~v~ 90 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKS-QLETRTLQLSVW 90 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHH-HhCCCEEEEEEE
Confidence 4688999999999999998 788999999999852 468999999999999999999998743 344578999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccCCcccceEEEe
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTL 113 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L 113 (971)
|++.++ ++++||++.++++++... .....||+|
T Consensus 91 d~~~~~-~~~~iG~~~i~l~~l~~~--~~~~~w~~l 123 (123)
T cd08521 91 HHDRFG-RNTFLGEVEIPLDSWDLD--SQQSEWYPL 123 (123)
T ss_pred eCCCCc-CCceeeEEEEeccccccc--CCCccEEEC
Confidence 999886 789999999999999532 234589987
No 129
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.59 E-value=1.6e-14 Score=135.45 Aligned_cols=115 Identities=26% Similarity=0.480 Sum_probs=91.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCC
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSR 86 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d 86 (971)
|.|+|++|+||+.. |.+||||.++++++ .++|+++++ .||.|||+|.|.+... ++....|.|.+||.+..+ ++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~-~~~~~~l~i~v~d~~~~~-~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPP-DVTFFTLSFYNKDKRSKD-RD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCc-cccEEEEEEEEEecccCC-Ce
Confidence 78999999999976 78999999999986 479999989 9999999999998753 334468889999988754 56
Q ss_pred ceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 87 NFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 87 ~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
.++|.+.+..... +.....||+|.++.......|+|++.+.|
T Consensus 76 ~~~g~v~l~~~~~----~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKVALSKLDL----GQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEEEEecCcCC----CCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 7777766554433 23346899999876556778999999875
No 130
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.59 E-value=2.1e-14 Score=138.53 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=97.7
Q ss_pred EEEEEEEeeC--CCCCCCCCCCCcEEEEEEc-----CeEEEeecccCCCCCeeeeeeEEecCCCC-----CCCcceEEEE
Q 046822 8 LVVEVIAAHN--LMPKDGEGSSSPFVEVEFE-----KQILRTQVKYKDLNPIWNEKLVFDVPDIA-----ELPYKHIEVN 75 (971)
Q Consensus 8 L~V~V~~a~~--L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~v~~~~-----~l~~~~L~i~ 75 (971)
..++|..|++ |+..+..+.+||||++.+. .++.+|+++++|+||+|||+|.|.+.... .+....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3455666666 7788878899999999972 36899999999999999999999996542 3456789999
Q ss_pred EEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 76 VFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 76 V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
|||++.++++|++||++.++|+.+.... . ...|++|.... ....|+|.+++....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~-~-~~~~~~L~~~~--k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKC-E-IHESVDLMDGR--KATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccC-c-ceEEEEhhhCC--CCcCCEEEEEEEecC
Confidence 9999987557999999999999996533 2 34689987432 257799999998754
No 131
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.59 E-value=1.2e-14 Score=143.43 Aligned_cols=105 Identities=24% Similarity=0.346 Sum_probs=88.7
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-----CCEEEeeecccCCCCCeecceeEEEeeCC----CcEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-----GQKWVRTRTVVDSLSPKWNEQYTWEVFDP----CTVIT 665 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-----g~~~~rT~~~~~~~nP~Wne~~~~~v~~~----~~~l~ 665 (971)
...|.|.|+|++|+||+..+. .|.+ ||||++.+ +...+||++++++.||.|||.|.|++..+ ...|.
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~---~g~~-DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~ 99 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKS---GGTS-DSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLE 99 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCC---CCCC-CCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEE
Confidence 467999999999999998653 6788 99999987 23568999999999999999999986432 34899
Q ss_pred EEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 666 VGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 666 i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
|+|||++.++ +|++||++.+++.++......+.||.|.
T Consensus 100 i~V~d~d~~~---------~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 100 LTVWDHDKLS---------SNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred EEEEeCCCCC---------CCceEEEEEEeCCccccCCCccccccCC
Confidence 9999999765 8999999999999987655557888775
No 132
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.59 E-value=2.1e-14 Score=135.79 Aligned_cols=118 Identities=25% Similarity=0.348 Sum_probs=97.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSN 84 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~ 84 (971)
-.|.|+|++|+ |...+..+.+||||+++++++ .++|++++++.||.|||+|.|.+.. . ..|.|+|||++..+
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~----~~l~~~V~d~~~~~- 74 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-Q----STLEFKVWSHHTLK- 74 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-C----CEEEEEEEeCCCCC-
Confidence 36899999998 655565889999999999987 8999999999999999999999863 2 68999999999976
Q ss_pred CCceeEEEEEeCccccccCC-cc--cceEEEeEeCCC-CCeeeeEEEEEE
Q 046822 85 SRNFLGKVRAPCSQLCKNEG-EA--TAQLYTLEKRSL-FSHIRGEISLKL 130 (971)
Q Consensus 85 ~d~~lG~~~i~l~~l~~~~~-~~--~~~w~~L~~~~~-~~~~~G~i~l~~ 130 (971)
++++||++.++++++...+. .. ...|++|...+. .+...|+|.+.+
T Consensus 75 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 79999999999999965433 22 235899986653 457789998875
No 133
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.59 E-value=1.1e-14 Score=137.97 Aligned_cols=109 Identities=22% Similarity=0.273 Sum_probs=93.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccC-CCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYK-DLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSN 84 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~ 84 (971)
|.|.|+|++|++|+..+..+.+||||+++++++.++|++..+ +.||.|||+|.|.+..+.......|.|+|||++.++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~- 79 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFS- 79 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCC-
Confidence 679999999999999888899999999999999899998874 999999999999998762112378999999999876
Q ss_pred CCceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 85 SRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 85 ~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
++++||++.+++.++...+ ....|+.|.+.+
T Consensus 80 ~d~~iG~~~i~l~~l~~~~--~~~~~~~l~p~~ 110 (124)
T cd04049 80 DDDFIGEATIHLKGLFEEG--VEPGTAELVPAK 110 (124)
T ss_pred CCCeEEEEEEEhHHhhhCC--CCcCceEeeccc
Confidence 7999999999999997533 335899998764
No 134
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.59 E-value=6.2e-15 Score=141.46 Aligned_cols=106 Identities=29% Similarity=0.487 Sum_probs=91.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEc----CeEEEeecccCCCCCeeeeeeEEecCCC------------CCCCcce
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFE----KQILRTQVKYKDLNPIWNEKLVFDVPDI------------AELPYKH 71 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~----~~~~~T~~~~~t~nP~wne~f~f~v~~~------------~~l~~~~ 71 (971)
|+|+|++|++|+.+ ..|.+||||++.++ ++.++|++++++.||.|||+|.|.+... +.+....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 68999999999988 78899999999998 6789999999999999999999998765 2335679
Q ss_pred EEEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 72 IEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 72 L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
|.|+|||.+..+ +++|||++.+++.++... .....||+|++++
T Consensus 80 l~i~V~d~~~~~-~~~~IG~~~i~l~~l~~~--~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVS-GDDFLGEVRIPLQGLQQA--GSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCc-CCcEEEEEEEehhhccCC--CcccceEecCCcC
Confidence 999999999875 799999999999998742 2345899998874
No 135
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.59 E-value=1.2e-14 Score=140.62 Aligned_cols=112 Identities=21% Similarity=0.338 Sum_probs=93.7
Q ss_pred EEEEEEEeecCCCCCCCCC----------CCCCCceEEEEEECCeEEEeeecCCCCCCCCCCCcccceeEEEeecCC-CC
Q 046822 430 LRVSVIEAQDIVPGDKGSA----------MMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPF-ED 498 (971)
Q Consensus 430 L~V~v~~a~~L~~~d~~~~----------~~~~~dpyv~v~~g~~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~-~~ 498 (971)
|.|+|++|+||+.+|.++. ..+.+||||++.++++..||+++ +++.||.|||.|.|.+..+. .+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~-----~~t~nPvWNE~f~f~v~~p~~~~ 76 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVK-----KNSYNPEWNEQIVFPEMFPPLCE 76 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceE-----cCCCCCCcceEEEEEeeCCCcCC
Confidence 6899999999999986521 11468999999999999999999 89999999999999976543 56
Q ss_pred eEEEEEEeCcCCCCCceeEEEEEeccccccccccc---cccceeEEcccCC
Q 046822 499 YLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDK---QVVSRWFNLENHF 546 (971)
Q Consensus 499 ~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~---~~~~~w~~L~~~~ 546 (971)
.|.|+|||+|..++|++||.+.++|+++.....+. ...++|++|.+..
T Consensus 77 ~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 77 RIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 99999999998889999999999999987653221 2457999998876
No 136
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.59 E-value=1e-14 Score=136.64 Aligned_cols=104 Identities=28% Similarity=0.322 Sum_probs=91.2
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-EEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCc
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-KWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDK 676 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~ 676 (971)
|.|+|+|++|++|+..+. .|.+ ||||++.+++ ...+|+++.++.||.|||.|.|++..+...|.|+|||++.++
T Consensus 1 g~L~V~Vi~a~~L~~~d~---~g~~-DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNLEG---VGKI-DPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG- 75 (120)
T ss_pred CeEEEEEEeeECCCCccC---CCCc-CCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC-
Confidence 789999999999998653 6888 9999999976 569999999999999999999999888789999999999765
Q ss_pred cccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecC
Q 046822 677 NIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLH 715 (971)
Q Consensus 677 ~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~ 715 (971)
+|++||++.++|.++..+ ....||-|.+..
T Consensus 76 --------~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 76 --------KDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred --------CCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 889999999999999766 347889887543
No 137
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=1.9e-14 Score=134.50 Aligned_cols=112 Identities=29% Similarity=0.420 Sum_probs=94.6
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-EEEeeecccCCCCCeecceeEEEeeC-CCcEEEEEEEeCCCCCcc
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-KWVRTRTVVDSLSPKWNEQYTWEVFD-PCTVITVGVFDNCSLDKN 677 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-~~~rT~~~~~~~nP~Wne~~~~~v~~-~~~~l~i~V~D~~~~~~~ 677 (971)
|+|+|++|++|+..+ ..|.+ ||||++.+++ ..++|+++.++.||.|||.|.|.+.+ ....|.|+|||++.++
T Consensus 1 l~v~vi~a~~L~~~~---~~~~~-dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~-- 74 (115)
T cd04040 1 LTVDVISAENLPSAD---RNGKS-DPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG-- 74 (115)
T ss_pred CEEEEEeeeCCCCCC---CCCCC-CCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC--
Confidence 579999999999764 36788 9999999964 56899999999999999999999986 4569999999998664
Q ss_pred ccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEE
Q 046822 678 IINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHL 727 (971)
Q Consensus 678 ~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l 727 (971)
++++||++.+++.++..+.....|++|.. +|..+.|.+.|
T Consensus 75 -------~~~~iG~~~~~l~~l~~~~~~~~~~~L~~---~g~~~~~~~~~ 114 (115)
T cd04040 75 -------KDDLLGSAYIDLSDLEPEETTELTLPLDG---QGGGKLGAVFL 114 (115)
T ss_pred -------CCCceEEEEEEHHHcCCCCcEEEEEECcC---CCCccCceEEc
Confidence 89999999999999988888889999973 23344577654
No 138
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.58 E-value=1.8e-14 Score=136.02 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=87.4
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC---CEEEeeecccCCCCCeecceeEEE-eeC---CCcEEEEEE
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---QKWVRTRTVVDSLSPKWNEQYTWE-VFD---PCTVITVGV 668 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g---~~~~rT~~~~~~~nP~Wne~~~~~-v~~---~~~~l~i~V 668 (971)
..+.|.|+|++|+||++.+. .|.+ ||||++.+. .++.||+++++ .||+|||.|.|+ +.. ....|.++|
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~---~~~~-d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V 88 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDR---GGAS-SWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRL 88 (124)
T ss_pred CCCEEEEEEEEecCCCchhc---CCCC-CcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEE
Confidence 34689999999999998753 6778 999998762 45689999887 999999999998 542 345899999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
||++.++ ++++||++.|+|+++..+.....||+|.
T Consensus 89 ~~~~~~~---------~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 89 YGVERMR---------KERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred EECCCcc---------cCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9999775 8999999999999998887889999985
No 139
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.58 E-value=3.5e-14 Score=135.61 Aligned_cols=121 Identities=21% Similarity=0.325 Sum_probs=98.0
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeE-EEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCC-C
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQI-LRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERR-S 82 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~-~ 82 (971)
...|.|.|++|++|++++ +|||.|.++++. .||+++.++.||.|+|.|.|....+. ..|+|.||+.+. .
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~----~~l~v~v~k~~~~~ 80 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPV----SVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcc----cEEEEEEEEccCcc
Confidence 356899999999999865 799999999987 69999999999999999999866443 689999986543 2
Q ss_pred CC--CCceeEEEEEeCccccccCCcccceEEEeEeCCCCC--------eeeeEEEEEEEeeecc
Q 046822 83 SN--SRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFS--------HIRGEISLKLFVSTTE 136 (971)
Q Consensus 83 ~~--~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~--------~~~G~i~l~~~~~~~~ 136 (971)
+. ++.+||.+.|++.++.. +.....||+|....... ...+.|++++.|.+..
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~--~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSS--RQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcC--CCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 21 57999999999999973 34456999999875443 4458999999987543
No 140
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.58 E-value=3.2e-14 Score=135.26 Aligned_cols=119 Identities=20% Similarity=0.348 Sum_probs=99.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECC---eEEEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEEEE
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGN---QFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVE 505 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~---~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~ 505 (971)
.|+|+|++|++|+..+.. +.+||||++.+++ ..+||+++ +++.||.|||.|.|.+.......|.|+||
T Consensus 2 ~~~V~v~~a~~L~~~~~~----~~~Dpyv~v~~~~~~~~~~kT~~~-----~~t~~P~Wne~f~f~i~~~~~~~L~i~v~ 72 (126)
T cd04043 2 LFTIRIVRAENLKADSSN----GLSDPYVTLVDTNGKRRIAKTRTI-----YDTLNPRWDEEFELEVPAGEPLWISATVW 72 (126)
T ss_pred EEEEEEEEeECCCCCCCC----CCCCceEEEEECCCCeeeecccEe-----cCCCCCcccceEEEEcCCCCCCEEEEEEE
Confidence 589999999999998877 8999999999864 47899999 88999999999999998866678999999
Q ss_pred eCcCCCCCceeEEEEEeccccccccccccccceeEEcccCCCCCCCcceeeeeeeeeEEEEEccCc
Q 046822 506 DHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDGG 571 (971)
Q Consensus 506 d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~g~i~l~l~l~~~ 571 (971)
|++..+++++||++.++|+.+.... +......|++|.. .|++++++.+++.
T Consensus 73 d~d~~~~~~~iG~~~i~l~~~~~~~-~~~~~~~w~~l~~--------------~g~i~l~~~~~~~ 123 (126)
T cd04043 73 DRSFVGKHDLCGRASLKLDPKRFGD-DGLPREIWLDLDT--------------QGRLLLRVSMEGE 123 (126)
T ss_pred ECCCCCCCceEEEEEEecCHHHcCC-CCCCceEEEEcCC--------------CCeEEEEEEEeee
Confidence 9988778999999999998765431 1234578999964 2788998887653
No 141
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.57 E-value=2e-14 Score=134.65 Aligned_cols=104 Identities=25% Similarity=0.343 Sum_probs=90.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCC
Q 046822 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSN 84 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~ 84 (971)
|.|+|+|++|++|+..+..|.+||||++.+++ ..++|+++.++.||.|||+|.|.+.... +.|.|+|||++.++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~----~~L~v~v~d~~~~~- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPN----QKITLEVMDYEKVG- 75 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCC----CEEEEEEEECCCCC-
Confidence 67999999999999999889999999999987 4689999999999999999999987654 78999999999986
Q ss_pred CCceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 85 SRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 85 ~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
+|++||++.+++.++... ....||.|.+.+
T Consensus 76 ~d~~IG~~~~~l~~l~~~---~~~~~~~~~~~~ 105 (120)
T cd04045 76 KDRSLGSVEINVSDLIKK---NEDGKYVEYDDE 105 (120)
T ss_pred CCCeeeEEEEeHHHhhCC---CCCceEEecCCC
Confidence 789999999999999764 224678887654
No 142
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.57 E-value=1.4e-14 Score=137.19 Aligned_cols=108 Identities=31% Similarity=0.443 Sum_probs=91.3
Q ss_pred CCeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEc---CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 4 GKEKLVVEVIAAHNLMPKD-GEGSSSPFVEVEFE---KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d-~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
..+.|.|+|++|+||+.++ ..+.+||||++.+. .+.++|+++++++||.|||+|.|.+... ++....|.|.|||+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~-~l~~~~l~i~v~d~ 90 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFK-ELQRRTLRLSVYDV 90 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHH-HhcccEEEEEEEEC
Confidence 4678999999999999998 68899999999985 3468999999999999999999998643 23346899999999
Q ss_pred CCCCCCCceeEEEEEeCccccccCCcccceEEEeEe
Q 046822 80 RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEK 115 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~ 115 (971)
+..+ ++++||++.++|+++.... ....|++|++
T Consensus 91 ~~~~-~~~~iG~~~i~L~~l~~~~--~~~~w~~L~~ 123 (123)
T cd08390 91 DRFS-RHCIIGHVLFPLKDLDLVK--GGVVWRDLEP 123 (123)
T ss_pred CcCC-CCcEEEEEEEeccceecCC--CceEEEeCCC
Confidence 9876 7899999999999997543 2348999864
No 143
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.57 E-value=2.7e-14 Score=135.16 Aligned_cols=106 Identities=16% Similarity=0.195 Sum_probs=89.8
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC---CEEEeeecccCCCCCeecceeEEEeeCC---CcEEEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---QKWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITVGV 668 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g---~~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i~V 668 (971)
+..+.|.|+|++|+||+.++. ..|.+ ||||++.+. ....+|+++++++||.|||.|.|++... ...|.|.|
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~--~~~~~-dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v 87 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTK--DVAHC-DPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSV 87 (123)
T ss_pred CCCCEEEEEEEEecCCCCccC--CCCCC-CcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEE
Confidence 445789999999999998651 26778 999999983 4568999999999999999999998753 35899999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
||.+..+ ++++||++.++|+++........|++|.
T Consensus 88 ~d~~~~~---------~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 88 YDVDRFS---------RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred EECCcCC---------CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 9998654 7899999999999998777778999985
No 144
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.56 E-value=3.2e-14 Score=133.43 Aligned_cols=112 Identities=31% Similarity=0.490 Sum_probs=87.9
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE-EEeeecccCCCCCeecceeEEEeeCC---CcEEEEEEEeCCCCC
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-WVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITVGVFDNCSLD 675 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i~V~D~~~~~ 675 (971)
|.|+|++|+||+.. |.+ ||||+++++++ +++|+++.+ .||.|||+|.|.+... ...|.|.+||.+...
T Consensus 2 L~v~vi~a~~l~~~------~~~-dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~ 73 (117)
T cd08383 2 LRLRILEAKNLPSK------GTR-DPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD 73 (117)
T ss_pred eEEEEEEecCCCcC------CCC-CceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC
Confidence 78999999999863 678 99999999875 589999988 9999999999999863 347888888887432
Q ss_pred ccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 676 KNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 676 ~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
++..+|++.|.. +..+.....||+|...+.. .+..|+|+|+++|
T Consensus 74 ---------~~~~~g~v~l~~--~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~ 117 (117)
T cd08383 74 ---------RDIVIGKVALSK--LDLGQGKDEWFPLTPVDPD-SEVQGSVRLRARY 117 (117)
T ss_pred ---------CeeEEEEEEecC--cCCCCcceeEEECccCCCC-CCcCceEEEEEEC
Confidence 566777765544 4446667899999865442 2346999999976
No 145
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.56 E-value=1.5e-14 Score=140.03 Aligned_cols=100 Identities=31% Similarity=0.522 Sum_probs=86.3
Q ss_pred CCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----------------------------eEEEeecccCCCCCee
Q 046822 3 DGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----------------------------QILRTQVKYKDLNPIW 53 (971)
Q Consensus 3 ~~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----------------------------~~~~T~~~~~t~nP~w 53 (971)
...+.|.|+|++|+||.++|..|.+||||+|.+.. +.++|+++++++||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 45789999999999999999999999999999863 2378999999999999
Q ss_pred eeeeEEecCCCCCCCcceEEEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEe
Q 046822 54 NEKLVFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTL 113 (971)
Q Consensus 54 ne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L 113 (971)
||+|.|.+.... ...|.|+|||++ +++||++.++++++.. . ....||+|
T Consensus 105 nE~F~f~v~~~~---~~~L~i~V~D~d-----d~~IG~v~i~l~~l~~--~-~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDVS---NDQLHLDIWDHD-----DDFLGCVNIPLKDLPS--C-GLDSWFKL 153 (153)
T ss_pred ccEEEEEeccCC---CCEEEEEEEecC-----CCeEEEEEEEHHHhCC--C-CCCCeEeC
Confidence 999999987542 479999999987 7899999999999973 2 24689987
No 146
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.56 E-value=1.4e-14 Score=139.19 Aligned_cols=107 Identities=28% Similarity=0.462 Sum_probs=89.5
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+.+|..|.+||||++.+.+ ..++|+++++++||.|||+|.|.+... ++....|.|+|||
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~-~l~~~~l~~~V~d 89 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHS-DLAKKTLEITVWD 89 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHH-HhCCCEEEEEEEe
Confidence 4689999999999999999889999999999963 368999999999999999999998743 3445789999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeC
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~ 116 (971)
++..+ ++++||++.+++... + +...+||.+...
T Consensus 90 ~d~~~-~~~~lG~~~i~l~~~---~-~~~~~W~~~l~~ 122 (133)
T cd08384 90 KDIGK-SNDYIGGLQLGINAK---G-ERLRHWLDCLKN 122 (133)
T ss_pred CCCCC-CccEEEEEEEecCCC---C-chHHHHHHHHhC
Confidence 99876 789999999999862 2 233578877543
No 147
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.56 E-value=1.6e-14 Score=139.17 Aligned_cols=106 Identities=27% Similarity=0.427 Sum_probs=87.5
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|++|+.++..|.+||||+|.+.+ ..++|+++++++||.|||+|.|.+... ++....|.|+|||
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~-~l~~~~l~~~v~d 91 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFE-QIQKVHLIVTVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHH-HhCCCEEEEEEEe
Confidence 4678999999999999999999999999999952 367899999999999999999998642 3444689999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEe
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEK 115 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~ 115 (971)
++.++ ++++||++.|++... +. ....|+++..
T Consensus 92 ~~~~~-~~~~iG~~~i~~~~~---~~-~~~~W~~~~~ 123 (136)
T cd08402 92 YDRIG-KNDPIGKVVLGCNAT---GA-ELRHWSDMLA 123 (136)
T ss_pred CCCCC-CCceeEEEEECCccC---Ch-HHHHHHHHHh
Confidence 99987 799999999999763 22 2246666644
No 148
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.56 E-value=1.9e-14 Score=135.03 Aligned_cols=92 Identities=25% Similarity=0.351 Sum_probs=81.2
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCC
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSN 84 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~ 84 (971)
.+.|.|+|++|++|+. +..|.+||||+|.++++.++|++++++.||+|||+|.|...... ....|.|+|||++.++
T Consensus 27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~--~~~~L~v~V~D~d~~s- 102 (127)
T cd04032 27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELS--PGGKLRFEVWDRDNGW- 102 (127)
T ss_pred cEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCC--CCCEEEEEEEeCCCCC-
Confidence 4799999999999984 66788999999999999999999999999999999999753321 2379999999999987
Q ss_pred CCceeEEEEEeCcccc
Q 046822 85 SRNFLGKVRAPCSQLC 100 (971)
Q Consensus 85 ~d~~lG~~~i~l~~l~ 100 (971)
+|++||++.+++....
T Consensus 103 ~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 103 DDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCeeEEEEEEecCCc
Confidence 7999999999999764
No 149
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.55 E-value=2.2e-14 Score=137.65 Aligned_cols=102 Identities=20% Similarity=0.275 Sum_probs=89.5
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC----CEEEeeecccCCCCCeecceeEEEeeCC---------------
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG----QKWVRTRTVVDSLSPKWNEQYTWEVFDP--------------- 660 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g----~~~~rT~~~~~~~nP~Wne~~~~~v~~~--------------- 660 (971)
|+|.|++|+||+.+ . .|.+ ||||++.++ +...||+++.++.||.|||.|.|++...
T Consensus 1 L~V~Vi~A~~L~~~-~---~g~~-dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~ 75 (137)
T cd08675 1 LSVRVLECRDLALK-S---NGTC-DPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDL 75 (137)
T ss_pred CEEEEEEccCCCcc-c---CCCC-CcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccc
Confidence 57999999999875 2 6788 999999998 7789999999999999999999998875
Q ss_pred -CcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecC
Q 046822 661 -CTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLH 715 (971)
Q Consensus 661 -~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~ 715 (971)
...|.|+|||++.++ ++++||++.++|.++........||+|....
T Consensus 76 ~~~~l~i~V~d~~~~~---------~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 76 EKSELRVELWHASMVS---------GDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred cccEEEEEEEcCCcCc---------CCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 348999999999664 8999999999999997766678999998654
No 150
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.55 E-value=2.7e-14 Score=136.95 Aligned_cols=107 Identities=18% Similarity=0.275 Sum_probs=88.8
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC------eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK------QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVF 77 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~ 77 (971)
..++|.|+|++|+||+.++..|.+||||++.+.. .+++|++++++.||+|||+|.|.+.. +++....|.|.||
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~-~~l~~~~L~~~V~ 91 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVAL-FQLSEVTLMFSVY 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCH-HHhCccEEEEEEE
Confidence 4689999999999999999999999999999963 25799999999999999999999874 3566789999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEe
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEK 115 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~ 115 (971)
|++.++ ++++||++.+++...- .....+|+.+..
T Consensus 92 ~~~~~~-~~~~iG~v~l~~~~~~---~~~~~hW~~~l~ 125 (138)
T cd08408 92 NKRKMK-RKEMIGWFSLGLNSSG---EEEEEHWNEMKE 125 (138)
T ss_pred ECCCCC-CCcEEEEEEECCcCCC---chHHHHHHHHHh
Confidence 999976 8999999999987542 112235666643
No 151
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.55 E-value=6.5e-14 Score=132.45 Aligned_cols=116 Identities=22% Similarity=0.305 Sum_probs=92.1
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE-EEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCcc
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-WVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKN 677 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~ 677 (971)
.|+|+|++|+ |...+ ..|.+ ||||+++++++ ..+|+++.+++||.|||.|.|.+. ....|.|+|||++.++
T Consensus 3 ~L~V~i~~a~-l~~~~---~~~~~-dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~-- 74 (125)
T cd04021 3 QLQITVESAK-LKSNS---KSFKP-DPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLK-- 74 (125)
T ss_pred eEEEEEEeeE-CCCCC---cCCCC-CeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCC--
Confidence 6899999999 54332 36778 99999999877 899999999999999999999986 4568999999999765
Q ss_pred ccCCCCCCCceeEEEEEEcccccCCce-----EeeeEeceecCCCCcccceEEEEEE
Q 046822 678 IINNSGGRDSRIGKVRIRLSTLESDRV-----YTHSYPLLMLHPSGVKKMGELHLAV 729 (971)
Q Consensus 678 ~~~~~~~~d~~iG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~i~l~~ 729 (971)
+|++||++.++|+++..+.. +..|++|........+..|+|++.+
T Consensus 75 -------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 -------ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred -------CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 89999999999999864221 2458888754421223469998876
No 152
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=5.9e-14 Score=131.14 Aligned_cols=112 Identities=30% Similarity=0.473 Sum_probs=93.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCC
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSR 86 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d 86 (971)
|+|+|++|++|+..+..|.+||||++.+++ +.++|+++.++.||.|||+|.|.+.... ...|.|+|||++..+ ++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~---~~~l~~~v~d~~~~~-~~ 76 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRV---RAVLKVEVYDWDRGG-KD 76 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCC---CCEEEEEEEeCCCCC-CC
Confidence 589999999999998888999999999976 4589999999999999999999987543 378999999999876 79
Q ss_pred ceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEE
Q 046822 87 NFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEIS 127 (971)
Q Consensus 87 ~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~ 127 (971)
++||++.+++.++... .....|++|.+.+. ...|.+.
T Consensus 77 ~~iG~~~~~l~~l~~~--~~~~~~~~L~~~g~--~~~~~~~ 113 (115)
T cd04040 77 DLLGSAYIDLSDLEPE--ETTELTLPLDGQGG--GKLGAVF 113 (115)
T ss_pred CceEEEEEEHHHcCCC--CcEEEEEECcCCCC--ccCceEE
Confidence 9999999999998642 23457899987653 3446554
No 153
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.53 E-value=1.6e-14 Score=139.05 Aligned_cols=107 Identities=26% Similarity=0.382 Sum_probs=89.0
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+.+|..|.+||||++.+.. .+.+|+++++++||.|||+|.|.+... .+....|.|+|||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~-~~~~~~l~~~v~d 91 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSE-ELEDISVEFLVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHH-HhCCCEEEEEEEE
Confidence 3578999999999999999999999999999853 257899999999999999999998642 3345789999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeC
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~ 116 (971)
++.++ ++++||++.+++... + ....+|+.|...
T Consensus 92 ~d~~~-~~~~iG~~~~~~~~~---~-~~~~~w~~l~~~ 124 (136)
T cd08404 92 SDRVT-KNEVIGRLVLGPKAS---G-SGGHHWKEVCNP 124 (136)
T ss_pred CCCCC-CCccEEEEEECCcCC---C-chHHHHHHHHhC
Confidence 99987 799999999999882 2 223578887544
No 154
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.53 E-value=4.5e-14 Score=135.26 Aligned_cols=97 Identities=33% Similarity=0.477 Sum_probs=84.4
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc-------CeEEEeecccCCCCCeeeeeeEEecCCCC-CCCcceEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE-------KQILRTQVKYKDLNPIWNEKLVFDVPDIA-ELPYKHIEVN 75 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~-------~~~~~T~~~~~t~nP~wne~f~f~v~~~~-~l~~~~L~i~ 75 (971)
..+.|.|+|++|++|+..+..|.+||||+|.+. ...++|+++++|+||.|||+|.|.+.... ......|.|+
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 357899999999999999988999999999996 34789999999999999999999987532 2234789999
Q ss_pred EEeCCCCCCCCceeEEEEEeCccccc
Q 046822 76 VFNERRSSNSRNFLGKVRAPCSQLCK 101 (971)
Q Consensus 76 V~d~~~~~~~d~~lG~~~i~l~~l~~ 101 (971)
|||++.++ ++++||++.++|+++..
T Consensus 94 V~d~d~~~-~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 94 VKDYDLLG-SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEecCCCC-CCcEeEEEEEeHHHCCc
Confidence 99999986 79999999999999964
No 155
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.53 E-value=6.4e-14 Score=131.17 Aligned_cols=93 Identities=17% Similarity=0.266 Sum_probs=79.7
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCC-CCeeeeeeEEecCCCCCCCcceEEEEEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDL-NPIWNEKLVFDVPDIAELPYKHIEVNVF 77 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~-nP~wne~f~f~v~~~~~l~~~~L~i~V~ 77 (971)
..++|.|+|++|+||++.+..+.+||||+|++.. .+++|+++++|+ ||.|||+|.|++... ..+-.|.|+||
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~--~~~v~l~v~v~ 89 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQ--EHGIQFLIKLY 89 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCch--hheeEEEEEEE
Confidence 4688999999999999886667789999999862 378899999995 699999999999853 23578999999
Q ss_pred eCCCCCCCCceeEEEEEeCccc
Q 046822 78 NERRSSNSRNFLGKVRAPCSQL 99 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l 99 (971)
|++..+ ++++||++.++.+..
T Consensus 90 d~~~~~-~n~~IG~v~lG~~~~ 110 (135)
T cd08692 90 SRSSVR-RKHFLGQVWISSDSS 110 (135)
T ss_pred eCCCCc-CCceEEEEEECCccC
Confidence 999876 799999999999764
No 156
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.53 E-value=8.4e-14 Score=133.32 Aligned_cols=104 Identities=26% Similarity=0.375 Sum_probs=88.8
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-----EEEeeecccCCCCCeecceeEEEeeCC--CcEEEEEEEe
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-----KWVRTRTVVDSLSPKWNEQYTWEVFDP--CTVITVGVFD 670 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-----~~~rT~~~~~~~nP~Wne~~~~~v~~~--~~~l~i~V~D 670 (971)
|.|.|+|++|++|+..+ ..|.+ ||||.+.+.+ ...||+++.++.||.|||.|.|++... ...|.|+|||
T Consensus 13 ~~l~v~i~~a~nL~~~~---~~~~~-dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d 88 (131)
T cd04026 13 NKLTVEVREAKNLIPMD---PNGLS-DPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWD 88 (131)
T ss_pred CEEEEEEEEeeCCCCcC---CCCCC-CCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEE
Confidence 68999999999998754 36778 9999999952 579999999999999999999998754 4589999999
Q ss_pred CCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecC
Q 046822 671 NCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLH 715 (971)
Q Consensus 671 ~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~ 715 (971)
++.++ ++++||++.++|+++... ....||+|.+.+
T Consensus 89 ~~~~~---------~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~ 123 (131)
T cd04026 89 WDRTT---------RNDFMGSLSFGVSELIKM-PVDGWYKLLNQE 123 (131)
T ss_pred CCCCC---------CcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence 98654 899999999999999754 557899998543
No 157
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.52 E-value=3.6e-14 Score=164.08 Aligned_cols=390 Identities=20% Similarity=0.205 Sum_probs=230.2
Q ss_pred eEEEEEEEEeecCC---CCCCCCeEEEEEECCeeeeeeeecCC-CCccccEEEEeccCC---------CcceEEEEEecC
Q 046822 272 QYLYVRVVKARDIS---LFGGGEIVAEVKLGNYRGITKRVSSN-HLQWDQVFAFSKDCI---------QSSAAEIFVKES 338 (971)
Q Consensus 272 ~~L~V~v~~a~~L~---~~~~~dpyV~v~~~~~~~kT~~~~~~-nP~wne~f~f~~~~~---------~~~~l~v~v~D~ 338 (971)
+.+++.|.+|++|. ..+-+|||+.+.+-++...|.++.++ ||.|+++..|.-.++ +...+.++++|.
T Consensus 206 ~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~ 285 (1105)
T KOG1326|consen 206 SPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDL 285 (1105)
T ss_pred hhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehh
Confidence 56888999999998 66789999999999999999999999 999999999975432 124566777776
Q ss_pred ---CCCcccEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCccccEEEEEEEEEecccchHHHHHhhccccccCCCCcc
Q 046822 339 ---DKDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSIWFGTQADEAFAEAWHSKAANVHFDGLC 415 (971)
Q Consensus 339 ---~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 415 (971)
+.++++|.+.....-+.. + .+-.|+++....- ..|++.++..+..+.. +-.|... ..+...
T Consensus 286 dr~g~~ef~gr~~~~p~V~~~--~----p~lkw~p~~rg~~---l~gd~l~a~eliq~~~---~i~~p~~----~~~~~~ 349 (1105)
T KOG1326|consen 286 DRSGINEFKGRKKQRPYVMVQ--C----PALKWVPTMRGAF---LDGDVLIAAELIQIGK---PIPQPPP----QREIIF 349 (1105)
T ss_pred hhhchHHhhcccccceEEEec--C----CccceEEeecccc---cccchhHHHHHHhhcC---CCCCCCc----ccccce
Confidence 899999998765443322 1 1228998875432 4467665441110000 0001000 000000
Q ss_pred ccccccccCCceEEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECCeEEEeeecCCCCCCCCCCCcccceeEEEe-ec
Q 046822 416 SLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLLFVV-AE 494 (971)
Q Consensus 416 ~~~~k~~~~p~l~~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~~~~rT~~~~~~~~~~~~nP~w~e~f~f~~-~~ 494 (971)
..-++ ...|.+..-.++| =+.+|..+...+ +.....|-+.+.+|++..++..+. ..-.||.+...+.+.. .-
T Consensus 350 ~~vp~-~iRp~~q~~~~ev-l~wgLrn~k~~~-m~~~~~P~~~~e~g~e~v~s~~I~----~~k~npnf~s~~~~~~v~l 422 (1105)
T KOG1326|consen 350 SLVPK-KIRPKTQIGKAEL-LMWGLRNPKKSG-MASTFSPALLVEFGGERVSSFSIF----NRKKNPNFPSRVLGRLVIL 422 (1105)
T ss_pred ecccc-CCCcceeeeeeeh-hhhhhccccccc-ccccCCcceeEeeCCceEeeeeeh----hhhhCCCCceeEEEEEEec
Confidence 00000 0223333233332 134554444331 124567888889999988888772 4556888887665433 22
Q ss_pred CC----CCeEEEEEEeCcCCCCCceeEEEEEec-cccccc----------------------ccc--c------------
Q 046822 495 PF----EDYLLISVEDHVGPGKDEIVGKVLIPV-SAVERR----------------------TDD--K------------ 533 (971)
Q Consensus 495 ~~----~~~L~v~V~d~d~~~~d~~iG~~~i~L-~~l~~~----------------------~~~--~------------ 533 (971)
|. ...+.+.|.|.+.++.-..+|.|.|.- ..+.-+ .+. +
T Consensus 423 pd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~ 502 (1105)
T KOG1326|consen 423 PDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHCNSSTLPASPH 502 (1105)
T ss_pred cchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhccccCCCCCcc
Confidence 22 347999999999999999999998761 111000 000 0
Q ss_pred -----cccceeEEcccCCCCC--C---Ccce-------------eeeeee----eeEEEEEccCcc-------cccCcc-
Q 046822 534 -----QVVSRWFNLENHFGNQ--G---ESKV-------------VTRFGS----RIHLRVSLDGGY-------HVLDEA- 578 (971)
Q Consensus 534 -----~~~~~w~~L~~~~~~~--~---~~~~-------------~~~~~g----~i~l~l~l~~~~-------~~~~~~- 578 (971)
....-|-.+....++. . .-+. ...|.| -+.+.++ .|.. ++..+.
T Consensus 503 ~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~D~~~~f~l~-rG~~~~e~~e~~Ivg~fK 581 (1105)
T KOG1326|consen 503 EDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQDWAVTFKLY-RGKEGLECLEQQIVGEFK 581 (1105)
T ss_pred ccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhhhccceeEee-eccccCCCcccchhhhhh
Confidence 0001111111111000 0 0000 001111 1111111 1110 000000
Q ss_pred ---------ccccCCCcccccc-cC--CCceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEE--EeeecccCC
Q 046822 579 ---------TLYSSDVKPTAKQ-LW--KPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKW--VRTRTVVDS 644 (971)
Q Consensus 579 ---------~~~~sd~~~~~~~-~~--~~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~--~rT~~~~~~ 644 (971)
....+...|..-+ +. .+-.-.++|+|++|.+|.+. |++|++ |||+++.+|.+. -+...+.++
T Consensus 582 gl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~---D~ng~a-dpYv~l~lGk~~~~d~~~yip~t 657 (1105)
T KOG1326|consen 582 GLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPS---DGNGDA-DPYVKLLLGKKRTLDRAHYIPNT 657 (1105)
T ss_pred cceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeecccc---CCCCCc-CceeeeeeccchhhhhhhcCcCC
Confidence 0000111111000 10 12334568999999999885 669999 999999999887 566778999
Q ss_pred CCCeecceeEEEeeCCCc-EEEEEEEeCCCCCccccCCCCCCCceeEEEEEEccc
Q 046822 645 LSPKWNEQYTWEVFDPCT-VITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLST 698 (971)
Q Consensus 645 ~nP~Wne~~~~~v~~~~~-~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~ 698 (971)
+||+|++.|.+....|.. .++++|||+|.++ .|+.||...|+|+.
T Consensus 658 lnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~---------~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 658 LNPVFGKMFELECLLPFEKDLIVEVYDHDLEA---------QDEKIGETTIDLEN 703 (1105)
T ss_pred CCcHHHHHHHhhcccchhhcceeEEEEeeccc---------ccchhhceehhhhh
Confidence 999999999999998766 8999999999775 89999999999986
No 158
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.52 E-value=8e-14 Score=133.57 Aligned_cols=93 Identities=20% Similarity=0.291 Sum_probs=80.6
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-------CEEEeeecccCCCCCeecceeEEEeeCC-----CcE
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-------QKWVRTRTVVDSLSPKWNEQYTWEVFDP-----CTV 663 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-------~~~~rT~~~~~~~nP~Wne~~~~~v~~~-----~~~ 663 (971)
..+.|.|+|++|++|+.++ ..|.+ ||||++.+. ....||+++++++||.|||.|.|++... ...
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~---~~g~~-dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~ 89 (133)
T cd04009 14 SEQSLRVEILNARNLLPLD---SNGSS-DPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGAL 89 (133)
T ss_pred CCCEEEEEEEEeeCCCCcC---CCCCC-CCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCE
Confidence 3468999999999999864 36888 999999984 3468999999999999999999998753 348
Q ss_pred EEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccC
Q 046822 664 ITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLES 701 (971)
Q Consensus 664 l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~ 701 (971)
|.|+|||++.++ +|++||++.++|++|..
T Consensus 90 l~~~V~d~d~~~---------~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 90 LLFTVKDYDLLG---------SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEEEEecCCCC---------CCcEeEEEEEeHHHCCc
Confidence 999999999765 89999999999999864
No 159
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.52 E-value=5e-14 Score=135.74 Aligned_cols=94 Identities=28% Similarity=0.485 Sum_probs=81.5
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc--C---eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE--K---QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||...+..|.+||||++.+. + ..++|++++++.||.|||+|.|.+... .+....|.|+|||
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~-~~~~~~l~~~v~d 91 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLE-RLRETTLIITVMD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHH-HhCCCEEEEEEEE
Confidence 467899999999999999989999999999984 2 357899999999999999999997632 2334689999999
Q ss_pred CCCCCCCCceeEEEEEeCccc
Q 046822 79 ERRSSNSRNFLGKVRAPCSQL 99 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l 99 (971)
++.++ ++++||++.+++.+.
T Consensus 92 ~~~~~-~~~~lG~~~i~~~~~ 111 (136)
T cd08405 92 KDRLS-RNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCC-CCcEeEEEEECCccC
Confidence 99986 789999999999875
No 160
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.52 E-value=8.8e-14 Score=134.67 Aligned_cols=101 Identities=29% Similarity=0.503 Sum_probs=88.2
Q ss_pred CCceEEEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECC-----------------------------eEEEeeecCCC
Q 046822 424 SPKLWYLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGN-----------------------------QFLKTRIAAPS 474 (971)
Q Consensus 424 ~p~l~~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~-----------------------------~~~rT~~~~~~ 474 (971)
.|..+.|+|+|++|++|.++|.. |.+||||++.++. +.++|+++
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~----g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~--- 96 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVN----GFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVK--- 96 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCC----CCCCceEEEEEcccccccccccccccccccccccccccccccccEeccee---
Confidence 45678999999999999999988 8999999999853 24789888
Q ss_pred CCCCCCCCcccceeEEEeecCCCCeEEEEEEeCcCCCCCceeEEEEEeccccccccccccccceeEEc
Q 046822 475 ATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNL 542 (971)
Q Consensus 475 ~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L 542 (971)
.+++||.|||.|.|.+..+..+.|.|+|||++ +++||++.++++++... ....||.|
T Consensus 97 --~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~-----~~d~W~~L 153 (153)
T cd08676 97 --PQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSC-----GLDSWFKL 153 (153)
T ss_pred --cCCCCCccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCC-----CCCCeEeC
Confidence 89999999999999998776779999999986 88999999999998732 24899986
No 161
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.52 E-value=5.2e-14 Score=135.54 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=86.1
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC--CE---EEeeecccCCCCCeecceeEEEeeC---CCcEEEEE
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG--QK---WVRTRTVVDSLSPKWNEQYTWEVFD---PCTVITVG 667 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g--~~---~~rT~~~~~~~nP~Wne~~~~~v~~---~~~~l~i~ 667 (971)
..+.|.|+|++|+||+.++. .|.+ ||||++.+. ++ ..||+++++++||.|||.|.|.+.. ....|.|+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~---~g~~-Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~ 88 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDV---SGLA-DPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFL 88 (136)
T ss_pred CCCeEEEEEEEeeCCCcccc---CCCC-CeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 34689999999999998654 7888 999999983 32 4789999999999999999999874 34479999
Q ss_pred EEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 668 VFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
|||++.++ ++++||++.+++... +....+|++|..
T Consensus 89 v~d~d~~~---------~~~~iG~~~~~~~~~--~~~~~~w~~l~~ 123 (136)
T cd08404 89 VLDSDRVT---------KNEVIGRLVLGPKAS--GSGGHHWKEVCN 123 (136)
T ss_pred EEECCCCC---------CCccEEEEEECCcCC--CchHHHHHHHHh
Confidence 99999775 899999999999983 444588998864
No 162
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.51 E-value=4.9e-14 Score=134.42 Aligned_cols=104 Identities=21% Similarity=0.221 Sum_probs=85.0
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC---CE--EEeeecccCCCCCeecceeEEEeeC---CCcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---QK--WVRTRTVVDSLSPKWNEQYTWEVFD---PCTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g---~~--~~rT~~~~~~~nP~Wne~~~~~v~~---~~~~l~i 666 (971)
+..+.|.|+|++|+||++.+ ..|.+ ||||++.+. .+ +.||+++++++||+|||.|.|.|.. ....|.|
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~~---~~g~~-DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~ 87 (136)
T cd08406 12 PTAERLTVVVVKARNLVWDN---GKTTA-DPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRV 87 (136)
T ss_pred CCCCEEEEEEEEeeCCCCcc---CCCCC-CeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEE
Confidence 44568999999999999864 47888 999999982 22 5689999999999999999999874 3448999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
+|||+|.++ ++++||++.|.... .+...++|..+..
T Consensus 88 ~V~~~d~~~---------~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 88 TVAESTEDG---------KTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred EEEeCCCCC---------CCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 999999765 89999999998765 3444578877764
No 163
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.51 E-value=7.7e-14 Score=133.91 Aligned_cols=108 Identities=23% Similarity=0.402 Sum_probs=86.6
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+..|..|.+||||++.+.. +.++|+++++|+||.|||+|.|.+.. +++....|.|+|||
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~-~~l~~~~l~~~V~d 90 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQ-EELENVSLVFTVYG 90 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCH-HHhCCCEEEEEEEe
Confidence 4678999999999999999999999999999842 35799999999999999999999864 23444679999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeC
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~ 116 (971)
++..+ ++++||++.|...... ......|+.|...
T Consensus 91 ~d~~~-~~~~iG~~~l~~~~~~---~~~~~~W~~l~~~ 124 (135)
T cd08410 91 HNVKS-SNDFIGRIVIGQYSSG---PSETNHWRRMLNS 124 (135)
T ss_pred CCCCC-CCcEEEEEEEcCccCC---chHHHHHHHHHhC
Confidence 99876 8999999987654432 2223467777544
No 164
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.51 E-value=8.7e-14 Score=131.39 Aligned_cols=91 Identities=21% Similarity=0.333 Sum_probs=81.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeE--EEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQI--LRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSN 84 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~--~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~ 84 (971)
.|+|.|++|++|+..|..|.+||||++.++++. .+|+++++++||.|||+|.|.+..+. ...|.|+|||++.++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~---~~~L~~~V~d~d~~~- 76 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPG---NSILKISVMDYDLLG- 76 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCC---CCEEEEEEEECCCCC-
Confidence 379999999999999999999999999999865 57888889999999999999976544 378999999999986
Q ss_pred CCceeEEEEEeCccccc
Q 046822 85 SRNFLGKVRAPCSQLCK 101 (971)
Q Consensus 85 ~d~~lG~~~i~l~~l~~ 101 (971)
+|++||++.+++++...
T Consensus 77 ~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 77 SDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCceeEEEEEeeccccc
Confidence 79999999999998753
No 165
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.51 E-value=3.6e-14 Score=135.14 Aligned_cols=106 Identities=20% Similarity=0.254 Sum_probs=85.4
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-----EEEeeecccCCCCCeecceeEEEeeCC---CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-----KWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-----~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i 666 (971)
+..|.|.|.|++|+||++++. +..+.+ ||||++.+.. .+.||+++++++||+|||.|.|.+... ...|.|
T Consensus 12 ~~~~~L~V~V~karnL~~~d~-~~~~~~-DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~ 89 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQL-KLLLGI-DVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL 89 (138)
T ss_pred CCCCeEEEEEEEecCCCcccc-CCCCCC-CeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence 456889999999999998763 123447 9999999842 246899999999999999999998752 448999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
+|||+|.++ ++++||++.+.+.. .|....+|..+..
T Consensus 90 ~V~d~d~~~---------~~d~iG~v~lg~~~--~g~~~~hW~~ml~ 125 (138)
T cd08407 90 EVLNQDSPG---------QSLPLGRCSLGLHT--SGTERQHWEEMLD 125 (138)
T ss_pred EEEeCCCCc---------CcceeceEEecCcC--CCcHHHHHHHHHh
Confidence 999999776 89999999999975 3444567776653
No 166
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.51 E-value=7e-15 Score=155.07 Aligned_cols=107 Identities=27% Similarity=0.502 Sum_probs=93.0
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
....|.|+|.+|+||-++|.+|.|||||++++-. .+++|++++.++||+|||+|.|.+...+. +..|.|+|||
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~Dk--drRlsiEvWD 255 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDK--DRRLSIEVWD 255 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccc--cceeEEEEec
Confidence 3567999999999999999999999999999952 36899999999999999999999875442 4799999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeC
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~ 116 (971)
+|+.+ +++|+|..++.+++|...+ ...||.|...
T Consensus 256 WDrTs-RNDFMGslSFgisEl~K~p---~~GWyKlLsq 289 (683)
T KOG0696|consen 256 WDRTS-RNDFMGSLSFGISELQKAP---VDGWYKLLSQ 289 (683)
T ss_pred ccccc-cccccceecccHHHHhhcc---hhhHHHHhhh
Confidence 99987 8999999999999996533 3479999754
No 167
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.51 E-value=9.4e-14 Score=133.44 Aligned_cols=106 Identities=28% Similarity=0.416 Sum_probs=86.1
Q ss_pred CCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEE
Q 046822 3 DGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVF 77 (971)
Q Consensus 3 ~~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~ 77 (971)
...+.|+|+|++|++|++++..|.+||||++.+.. ..++|+++++++||.|||+|.|.+.. +.+....|.|+||
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~-~~~~~~~l~~~v~ 89 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPP-ENVDNVSLIIAVV 89 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCH-HHhCCCEEEEEEE
Confidence 35689999999999999999999999999999852 26789999999999999999999763 2334467999999
Q ss_pred eCCCCCCCCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 78 NERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 78 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
|++.++ ++++||++.+++... ......|+.+.
T Consensus 90 d~~~~~-~~~~IG~~~l~~~~~----~~~~~~w~~~~ 121 (134)
T cd08403 90 DYDRVG-HNELIGVCRVGPNAD----GQGREHWNEML 121 (134)
T ss_pred ECCCCC-CCceeEEEEECCCCC----CchHHHHHHHH
Confidence 999987 799999999988732 12223566654
No 168
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.50 E-value=5e-14 Score=135.72 Aligned_cols=104 Identities=28% Similarity=0.320 Sum_probs=86.9
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC--C---EEEeeecccCCCCCeecceeEEEeeCC---CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG--Q---KWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g--~---~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i 666 (971)
+..|.|.|+|++|++|+.++ ..|.+ ||||++.++ + ...+|+++++++||.|||.|.|++... ...|.|
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~d---~~g~~-dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~ 87 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKMD---VGGLS-DPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIV 87 (136)
T ss_pred CCCCeEEEEEEEeeCCCccc---CCCCC-CCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 56689999999999999764 47788 999999984 2 357899999999999999999998643 237999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
+|||++.++ +|++||++.|++... +....+|+++..
T Consensus 88 ~v~d~~~~~---------~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 88 TVLDYDRIG---------KNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EEEeCCCCC---------CCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 999999775 899999999999875 444578888874
No 169
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.50 E-value=7.7e-14 Score=134.09 Aligned_cols=93 Identities=23% Similarity=0.302 Sum_probs=80.8
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+..+ .+.+||||++.+.. .+++|++++++.||.|||+|.|.+.. +.+....|.|.|||
T Consensus 13 ~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~-~~l~~~~L~~~V~~ 90 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTS-RQLDTASLSLSVMQ 90 (137)
T ss_pred CCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCH-HHhCccEEEEEEEe
Confidence 3578999999999999998 88899999999863 36789999999999999999999864 34556899999999
Q ss_pred CCCCCCCCceeEEEEEeCccc
Q 046822 79 ERRSSNSRNFLGKVRAPCSQL 99 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l 99 (971)
++..+ ++++||++.++....
T Consensus 91 ~~~~~-~~~~lG~v~ig~~~~ 110 (137)
T cd08409 91 SGGVR-KSKLLGRVVLGPFMY 110 (137)
T ss_pred CCCCC-CcceEEEEEECCccc
Confidence 99876 799999999986543
No 170
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.50 E-value=1.2e-13 Score=132.27 Aligned_cols=107 Identities=31% Similarity=0.542 Sum_probs=92.3
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|+|+|++|+||+..+..+.+||||+|.+.+ +.++|++++++.||.|||+|.|.+...+ ....|.|.|||
T Consensus 11 ~~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~--~~~~l~v~v~d 88 (131)
T cd04026 11 KDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD--KDRRLSIEVWD 88 (131)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh--cCCEEEEEEEE
Confidence 3478999999999999998889999999999963 5799999999999999999999987543 23689999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeC
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~ 116 (971)
++..+ ++++||++.++++++... ....||+|...
T Consensus 89 ~~~~~-~~~~iG~~~~~l~~l~~~---~~~~w~~L~~~ 122 (131)
T cd04026 89 WDRTT-RNDFMGSLSFGVSELIKM---PVDGWYKLLNQ 122 (131)
T ss_pred CCCCC-CcceeEEEEEeHHHhCcC---ccCceEECcCc
Confidence 99876 799999999999999743 34589999764
No 171
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.49 E-value=1.3e-13 Score=127.61 Aligned_cols=101 Identities=26% Similarity=0.377 Sum_probs=84.7
Q ss_pred CCCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCCceeEEEEEeCccccc
Q 046822 23 GEGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCK 101 (971)
Q Consensus 23 ~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~ 101 (971)
.+|.+||||+|.++++ .++|++++++.||.|||+|.|.+.+.. ...|.|.|||++.+ ++++||++.++|+++..
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~i~v~d~~~~--~d~~iG~~~v~L~~l~~ 83 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRR---KSRVTVVVKDDRDR--HDPVLGSVSISLNDLID 83 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcC---CCEEEEEEEECCCC--CCCeEEEEEecHHHHHh
Confidence 3688999999999885 579999999999999999999987653 37899999999987 69999999999999864
Q ss_pred cCCcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 102 NEGEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 102 ~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
... ....||+|+. ...|+|++++.|.+
T Consensus 84 ~~~-~~~~w~~L~~-----~~~G~i~~~~~~~p 110 (111)
T cd04052 84 ATS-VGQQWFPLSG-----NGQGRIRISALWKP 110 (111)
T ss_pred hhh-ccceeEECCC-----CCCCEEEEEEEEec
Confidence 322 3458999975 24699999998864
No 172
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.49 E-value=4.4e-13 Score=127.94 Aligned_cols=117 Identities=21% Similarity=0.319 Sum_probs=94.2
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE------CCEEEeeecccCCC-CCeecceeEEEeeCCC-cEEEEEEEe
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY------GQKWVRTRTVVDSL-SPKWNEQYTWEVFDPC-TVITVGVFD 670 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~------g~~~~rT~~~~~~~-nP~Wne~~~~~v~~~~-~~l~i~V~D 670 (971)
.|+|+|++|+||+.++. +..+.. ||||++++ +...+||+++.++. ||.|||.|.|++..+. ..|.|+|||
T Consensus 3 ~l~v~vi~a~~L~~~~~-~~~~~~-dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d 80 (128)
T cd00275 3 TLTIKIISGQQLPKPKG-DKGSIV-DPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYD 80 (128)
T ss_pred EEEEEEEeeecCCCCCC-CCCCcc-CCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEe
Confidence 68999999999997642 135677 99999998 34569999988776 9999999999998765 479999999
Q ss_pred CCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 671 NCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 671 ~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
++.. +|++||.+.++|++|..+. .+++|....... ...|.|.+.+++
T Consensus 81 ~~~~----------~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~-~~~~~l~v~~~~ 127 (128)
T cd00275 81 EDSG----------DDDFLGQACLPLDSLRQGY---RHVPLLDSKGEP-LELSTLFVHIDI 127 (128)
T ss_pred CCCC----------CCcEeEEEEEEhHHhcCce---EEEEecCCCCCC-CcceeEEEEEEE
Confidence 9732 7899999999999997764 678888654432 234889988876
No 173
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.49 E-value=5.7e-14 Score=134.88 Aligned_cols=104 Identities=18% Similarity=0.287 Sum_probs=87.0
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-----CEEEeeecccCCCCCeecceeEEEeeCC---CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-----QKWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-----~~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i 666 (971)
...|.|.|+|++|+||++++. .|.+ ||||++.+. ....+|+++.+++||.|||.|.|++... ...|.|
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~d~---~~~~-DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~ 85 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAMDA---NGYS-DPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEI 85 (133)
T ss_pred CCCCEEEEEEEEEcCCCCcCC---CCCC-CcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEE
Confidence 456899999999999998654 6788 999999984 2358999999999999999999998753 358999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
+|||++..+ +|++||.+.+++... +....+||++..
T Consensus 86 ~V~d~d~~~---------~~~~lG~~~i~l~~~--~~~~~~W~~~l~ 121 (133)
T cd08384 86 TVWDKDIGK---------SNDYIGGLQLGINAK--GERLRHWLDCLK 121 (133)
T ss_pred EEEeCCCCC---------CccEEEEEEEecCCC--CchHHHHHHHHh
Confidence 999998664 899999999999863 344478998874
No 174
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.49 E-value=9.7e-14 Score=133.73 Aligned_cols=104 Identities=23% Similarity=0.299 Sum_probs=85.9
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE--CC---EEEeeecccCCCCCeecceeEEEeeC--C-CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY--GQ---KWVRTRTVVDSLSPKWNEQYTWEVFD--P-CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~--g~---~~~rT~~~~~~~nP~Wne~~~~~v~~--~-~~~l~i 666 (971)
+..|.|.|+|++|+||+.++ ..|.+ ||||++.+ ++ ...||++++++.||.|||.|.|.+.. . ...|.|
T Consensus 12 ~~~~~L~v~vi~a~~L~~~~---~~g~~-dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~ 87 (136)
T cd08405 12 PTANRITVNIIKARNLKAMD---INGTS-DPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLII 87 (136)
T ss_pred CCCCeEEEEEEEeeCCCccc---cCCCC-CceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEE
Confidence 44578999999999998764 37788 99999998 32 24789999999999999999999863 2 348999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
+|||++.++ +|++||++.+++.+. +....+|+++..
T Consensus 88 ~v~d~~~~~---------~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 88 TVMDKDRLS---------RNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred EEEECCCCC---------CCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 999999775 889999999999986 344477887764
No 175
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.49 E-value=5e-13 Score=127.32 Aligned_cols=118 Identities=22% Similarity=0.271 Sum_probs=90.1
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC--C-----------EEEeeecccCCCCCee-cceeEEEeeCCCcEE
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG--Q-----------KWVRTRTVVDSLSPKW-NEQYTWEVFDPCTVI 664 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g--~-----------~~~rT~~~~~~~nP~W-ne~~~~~v~~~~~~l 664 (971)
...|.+++|+||+ . +..|++ ||||++.+. + +.+||+++++++||.| ||.|.|.+. ....|
T Consensus 2 ~~~~~~~~A~~L~-~---~~fg~~-DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-K---GMFFNP-DPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVL 75 (137)
T ss_pred EEEEEEEEeCCCC-C---ccCCCC-CceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEE
Confidence 3578999999997 3 347888 999999983 2 3689999999999999 999999985 45689
Q ss_pred EEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCC---ceEeeeEeceecCCCCcccceEEEEEE
Q 046822 665 TVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESD---RVYTHSYPLLMLHPSGVKKMGELHLAV 729 (971)
Q Consensus 665 ~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~---~~~~~~~~L~~~~~~g~~~~G~i~l~~ 729 (971)
.|+|||++..+ ....+++||++.|+|++|..+ .....||+|......+ .-.|+|.|.+
T Consensus 76 ~v~V~D~~~~~------~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s-~v~G~~~l~~ 136 (137)
T cd08691 76 EIEVKDKFAKS------RPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTD-HVSGQLTFRF 136 (137)
T ss_pred EEEEEecCCCC------CccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCC-cEEEEEEEEe
Confidence 99999986322 111379999999999998643 2346789887443322 2358888765
No 176
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.48 E-value=2.3e-13 Score=125.95 Aligned_cols=97 Identities=25% Similarity=0.316 Sum_probs=82.3
Q ss_pred CCcccCcEEEEEECCE-EEeeecccCCCCCeecceeEEEeeCC-CcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEc
Q 046822 619 KGGSVDAYCVAKYGQK-WVRTRTVVDSLSPKWNEQYTWEVFDP-CTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRL 696 (971)
Q Consensus 619 ~g~s~dpy~~~~~g~~-~~rT~~~~~~~nP~Wne~~~~~v~~~-~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l 696 (971)
.|++ ||||++.++++ ..+|+++.++.||.|||.|.|.+.++ ...|.|.|||++.+ +|++||++.++|
T Consensus 10 ~G~~-dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~----------~d~~iG~~~v~L 78 (111)
T cd04052 10 TGLL-SPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR----------HDPVLGSVSISL 78 (111)
T ss_pred CCCC-CceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC----------CCCeEEEEEecH
Confidence 6788 99999999875 57999999999999999999999875 45899999999843 689999999999
Q ss_pred ccccC-CceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 697 STLES-DRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 697 ~~l~~-~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
+++.. +.....||+|.. ++.|+|++++.|+
T Consensus 79 ~~l~~~~~~~~~w~~L~~------~~~G~i~~~~~~~ 109 (111)
T cd04052 79 NDLIDATSVGQQWFPLSG------NGQGRIRISALWK 109 (111)
T ss_pred HHHHhhhhccceeEECCC------CCCCEEEEEEEEe
Confidence 99843 344578999973 2359999999886
No 177
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.48 E-value=5.3e-13 Score=121.35 Aligned_cols=87 Identities=24% Similarity=0.502 Sum_probs=68.1
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-----EEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCC
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-----KWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSL 674 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-----~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~ 674 (971)
|.|+|++|+||+ |.+ ||||++.++. ..+||+++.+|+||+|||.|.|++.. ...|.+.|||++.-
T Consensus 1 L~V~V~~A~~L~--------~~s-DPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK--------QSA-NLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC--------CCC-CCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccc
Confidence 679999999994 457 9999999842 35999999999999999999999974 66999999998310
Q ss_pred CccccCCCCCCCceeEEEEEEccc
Q 046822 675 DKNIINNSGGRDSRIGKVRIRLST 698 (971)
Q Consensus 675 ~~~~~~~~~~~d~~iG~~~i~l~~ 698 (971)
. .-.+..++|++||++.|.|..
T Consensus 71 ~--~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 71 K--VKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred c--ccccccCcccEEEEEEEEECH
Confidence 0 000122489999888888754
No 178
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.47 E-value=6.1e-13 Score=126.95 Aligned_cols=117 Identities=23% Similarity=0.369 Sum_probs=96.3
Q ss_pred eEEEEEEEEeeCCCCCC--CCCCCCcEEEEEEc------CeEEEeecccCCC-CCeeeeeeEEecCCCCCCCcceEEEEE
Q 046822 6 EKLVVEVIAAHNLMPKD--GEGSSSPFVEVEFE------KQILRTQVKYKDL-NPIWNEKLVFDVPDIAELPYKHIEVNV 76 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d--~~g~~dPyv~v~~~------~~~~~T~~~~~t~-nP~wne~f~f~v~~~~~l~~~~L~i~V 76 (971)
..|+|+|++|+||+..+ ..+.+||||++++. ..+++|+++.++. ||.|||+|.|.+..++ ...|.|+|
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~---~~~l~~~V 78 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE---LAFLRFVV 78 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC---eEEEEEEE
Confidence 57999999999999888 57899999999994 4568999988765 9999999999987554 25799999
Q ss_pred EeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 77 FNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 77 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
||.+.. ++++||++.++++++.. + ..|++|..........|.|.+++.+
T Consensus 79 ~d~~~~--~~~~iG~~~~~l~~l~~--g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 79 YDEDSG--DDDFLGQACLPLDSLRQ--G---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EeCCCC--CCcEeEEEEEEhHHhcC--c---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 999986 68999999999999842 1 2678887665444567999988865
No 179
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.47 E-value=1.1e-13 Score=176.50 Aligned_cols=117 Identities=26% Similarity=0.458 Sum_probs=102.0
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE-EEeeecccCCCCCeecceeEEEeeCCC--cEEEEEEEeCC
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-WVRTRTVVDSLSPKWNEQYTWEVFDPC--TVITVGVFDNC 672 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-~~rT~~~~~~~nP~Wne~~~~~v~~~~--~~l~i~V~D~~ 672 (971)
-.|.|.|+|++|+||. +. .|++ ||||++.+|++ ..||++++++.||+|||.|+|.+.+|. .+|+|+|||+|
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~---~~~s-dPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QS---MGNT-NAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred CCcceEEEEeeccccc--cc---cCCC-CCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 4799999999999997 21 5888 99999999955 789999999999999999999999876 58999999999
Q ss_pred CCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceE---EEEEEEEe
Q 046822 673 SLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGE---LHLAVRFS 732 (971)
Q Consensus 673 ~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~---i~l~~~f~ 732 (971)
.|+ ++.||++.|+|.++..++.+..||+|... | +|.|+ |+++++++
T Consensus 2052 ~f~----------kd~~G~~~i~l~~vv~~~~~~~~~~L~~~---~-~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2052 TFG----------KSSLGKVTIQIDRVVMEGTYSGEYSLNPE---S-NKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred ccC----------CCCCceEEEEHHHHhcCceeeeeeecCcc---c-ccCCCcceEEEEEEec
Confidence 874 45999999999999999999999999832 2 34587 99999876
No 180
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.46 E-value=1.6e-13 Score=132.20 Aligned_cols=108 Identities=31% Similarity=0.469 Sum_probs=91.3
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe-----EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-----ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~-----~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|.|+|++|+||+..+..+.+||||++.+.+. .++|+++.++.||.|||+|.|.+... .+....|.|+|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~-~l~~~~l~~~v~d 90 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAE-QLEEVSLVITVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHH-HhCCcEEEEEEEe
Confidence 46789999999999999988889999999999743 67999999999999999999998753 2345789999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
.+.++ ++++||++.+++++ . .....+|++|....
T Consensus 91 ~~~~~-~~~~lG~~~i~l~~-~---~~~~~~W~~l~~~~ 124 (134)
T cd00276 91 KDSVG-RNEVIGQVVLGPDS-G---GEELEHWNEMLASP 124 (134)
T ss_pred cCCCC-CCceeEEEEECCCC-C---CcHHHHHHHHHhCC
Confidence 99875 79999999999999 2 23346899987653
No 181
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.46 E-value=1.8e-13 Score=131.44 Aligned_cols=104 Identities=24% Similarity=0.320 Sum_probs=85.0
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC--C---EEEeeecccCCCCCeecceeEEEeeCC---CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG--Q---KWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g--~---~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i 666 (971)
+..|.|+|+|++|++|++++. .|.+ ||||++.++ + ...+|+++.+++||.|||.|.|.+... ...|.|
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~---~g~~-dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~ 86 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDI---TGFS-DPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLII 86 (134)
T ss_pred CCCCEEEEEEEEeeCCCcccc---CCCC-CceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 456899999999999998654 7888 999999983 2 257899999999999999999998642 237999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
+|||++.++ ++++||++.|++... +...++|+.+..
T Consensus 87 ~v~d~~~~~---------~~~~IG~~~l~~~~~--~~~~~~w~~~~~ 122 (134)
T cd08403 87 AVVDYDRVG---------HNELIGVCRVGPNAD--GQGREHWNEMLA 122 (134)
T ss_pred EEEECCCCC---------CCceeEEEEECCCCC--CchHHHHHHHHH
Confidence 999999775 899999999998844 333478887763
No 182
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.46 E-value=2.1e-13 Score=131.34 Aligned_cols=105 Identities=28% Similarity=0.368 Sum_probs=88.2
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-----EEEeeecccCCCCCeecceeEEEeeCC---CcEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-----KWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-----~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i 666 (971)
+..+.|.|.|++|+||+..+ ..|.+ ||||++.+.+ ...+|+++.++.||.|||.|.|.+... ...|.|
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~---~~~~~-dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~ 86 (134)
T cd00276 11 PTAERLTVVVLKARNLPPSD---GKGLS-DPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVI 86 (134)
T ss_pred CCCCEEEEEEEEeeCCCCcc---CCCCC-CcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEE
Confidence 34578999999999999764 36777 9999999843 257999999999999999999998764 468999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceec
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLML 714 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~ 714 (971)
+|||.+.++ ++++||.+.+++++ .+...++|++|...
T Consensus 87 ~v~d~~~~~---------~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 87 TVVDKDSVG---------RNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred EEEecCCCC---------CCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 999998654 89999999999999 45556899999854
No 183
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.45 E-value=4.6e-13 Score=126.47 Aligned_cols=91 Identities=22% Similarity=0.271 Sum_probs=81.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECCeE--EEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEEEEe
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGNQF--LKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVED 506 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~~~--~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d 506 (971)
+|+|.|++|++|..+|.. +.+||||+++++++. .||+++ +++.||.|||.|.|.+..+..+.|.|+|||
T Consensus 1 ~lrV~Vi~a~~L~~~d~~----g~~DPYv~v~~~~~~~~~kT~~v-----~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d 71 (124)
T cd04037 1 LVRVYVVRARNLQPKDPN----GKSDPYLKIKLGKKKINDRDNYI-----PNTLNPVFGKMFELEATLPGNSILKISVMD 71 (124)
T ss_pred CEEEEEEECcCCCCCCCC----CCCCcEEEEEECCeeccceeeEE-----ECCCCCccceEEEEEecCCCCCEEEEEEEE
Confidence 379999999999999987 899999999998865 567777 789999999999999887777899999999
Q ss_pred CcCCCCCceeEEEEEecccccc
Q 046822 507 HVGPGKDEIVGKVLIPVSAVER 528 (971)
Q Consensus 507 ~d~~~~d~~iG~~~i~L~~l~~ 528 (971)
++..+++++||++.++|.+...
T Consensus 72 ~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 72 YDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCCCCCceeEEEEEeeccccc
Confidence 9988899999999999987653
No 184
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.45 E-value=6.1e-14 Score=148.06 Aligned_cols=104 Identities=29% Similarity=0.448 Sum_probs=89.6
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-----CCEEEeeecccCCCCCeecceeEEEee--CCCcEEEEEEEe
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-----GQKWVRTRTVVDSLSPKWNEQYTWEVF--DPCTVITVGVFD 670 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-----g~~~~rT~~~~~~~nP~Wne~~~~~v~--~~~~~l~i~V~D 670 (971)
..|.|.|.+|+||.+||. +|-| ||||.+++ +..+.+|+|++.++||+|||+|+|.+. |....|.|+|||
T Consensus 180 ~~l~v~i~ea~NLiPMDp---NGlS-DPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWD 255 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDP---NGLS-DPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWD 255 (683)
T ss_pred ceEEEEehhhccccccCC---CCCC-CcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEec
Confidence 368999999999999865 8999 99999998 244689999999999999999999987 445589999999
Q ss_pred CCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecC
Q 046822 671 NCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLH 715 (971)
Q Consensus 671 ~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~ 715 (971)
||+.+ ++||+|...+.+++|.... ...||.|.+..
T Consensus 256 WDrTs---------RNDFMGslSFgisEl~K~p-~~GWyKlLsqe 290 (683)
T KOG0696|consen 256 WDRTS---------RNDFMGSLSFGISELQKAP-VDGWYKLLSQE 290 (683)
T ss_pred ccccc---------cccccceecccHHHHhhcc-hhhHHHHhhhh
Confidence 99664 9999999999999997543 37899888643
No 185
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.45 E-value=6.6e-13 Score=127.41 Aligned_cols=106 Identities=21% Similarity=0.323 Sum_probs=84.3
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE--CC---EEEeeecccCCCCCeecceeEEEeeC--CC-cEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY--GQ---KWVRTRTVVDSLSPKWNEQYTWEVFD--PC-TVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~--g~---~~~rT~~~~~~~nP~Wne~~~~~v~~--~~-~~l~i 666 (971)
+..|.|.|+|++|++|+.++. .|.+ ||||++.+ |. ...+|+++++++||.|||.|.|.+.. .. ..|.|
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~---~g~~-DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~ 86 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDM---SQGS-DPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVF 86 (135)
T ss_pred CCCCeEEEEEEEecCCCcccC---CCCC-CeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEE
Confidence 556899999999999998654 6788 99999997 32 34789999999999999999999863 22 37999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceec
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLML 714 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~ 714 (971)
+|||+|..+ +|++||++.|....... ....+|+.+...
T Consensus 87 ~V~d~d~~~---------~~~~iG~~~l~~~~~~~-~~~~~W~~l~~~ 124 (135)
T cd08410 87 TVYGHNVKS---------SNDFIGRIVIGQYSSGP-SETNHWRRMLNS 124 (135)
T ss_pred EEEeCCCCC---------CCcEEEEEEEcCccCCc-hHHHHHHHHHhC
Confidence 999999665 89999999977654432 223678887743
No 186
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.44 E-value=4.3e-13 Score=126.20 Aligned_cols=98 Identities=26% Similarity=0.351 Sum_probs=82.2
Q ss_pred EEEEeeCCCCCCCCCCCCcEEEEEEcCe-------EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCC--
Q 046822 11 EVIAAHNLMPKDGEGSSSPFVEVEFEKQ-------ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERR-- 81 (971)
Q Consensus 11 ~V~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~-- 81 (971)
-.++|++|+.++..|.+||||++.+.+. .++|+++++++||.|||+|.|.+.... ...|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~---~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE---VQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEe---eeEEEEEEEEecCCc
Confidence 4588999999999999999999999865 489999999999999999999865333 2689999999997
Q ss_pred --CCCCCceeEEEEEeCccccccCCcccceEEEeE
Q 046822 82 --SSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 82 --~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
.+ ++++||++.+++.++..... ...|++|.
T Consensus 82 ~~~~-~~d~iG~~~i~l~~l~~~~~--~~~~~~l~ 113 (120)
T cd04048 82 KDLS-DHDFLGEAECTLGEIVSSPG--QKLTLPLK 113 (120)
T ss_pred CCCC-CCcEEEEEEEEHHHHhcCCC--cEEEEEcc
Confidence 55 79999999999999975432 33578883
No 187
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.44 E-value=5.1e-13 Score=125.70 Aligned_cols=101 Identities=17% Similarity=0.222 Sum_probs=81.6
Q ss_pred EEEeeeCCCCCCccCCCCcccCcEEEEEECCE-------EEeeecccCCCCCeecceeEEEee-CCCcEEEEEEEeCCCC
Q 046822 603 GILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-------WVRTRTVVDSLSPKWNEQYTWEVF-DPCTVITVGVFDNCSL 674 (971)
Q Consensus 603 ~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-------~~rT~~~~~~~nP~Wne~~~~~v~-~~~~~l~i~V~D~~~~ 674 (971)
-.++|++|+..+ ..|++ ||||++.+++. .+||+++++++||.|||.|.|.+. +....|.|+|||+|..
T Consensus 5 ~~i~a~~L~~~d---~~g~~-DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~ 80 (120)
T cd04048 5 LSISCRNLLDKD---VLSKS-DPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSK 80 (120)
T ss_pred EEEEccCCCCCC---CCCCC-CcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCC
Confidence 357899998764 47888 99999999543 489999999999999999999865 3555899999999961
Q ss_pred CccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 675 DKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 675 ~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
+ ...++|++||++.+++++|..+.....+++|.
T Consensus 81 ~-----~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 81 S-----KDLSDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred c-----CCCCCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 0 00138999999999999998766567788884
No 188
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.44 E-value=1.2e-12 Score=119.14 Aligned_cols=81 Identities=17% Similarity=0.336 Sum_probs=69.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC---
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE--- 79 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~--- 79 (971)
|.|+|++|+||+ +.+||||++.+++ ..++|+++++|+||+|||+|+|.+.. . ..|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s----~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-S----QTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-C----CEEEEEEEEcccc
Confidence 689999999995 5699999999963 36899999999999999999999874 3 7999999998
Q ss_pred ----CCCCCCCceeEEEEEeCccc
Q 046822 80 ----RRSSNSRNFLGKVRAPCSQL 99 (971)
Q Consensus 80 ----~~~~~~d~~lG~~~i~l~~l 99 (971)
+..+ +|+++|++.+.|+.-
T Consensus 71 ~~~~d~~~-~d~~~G~g~i~Ld~~ 93 (118)
T cd08686 71 KVKLDGEG-TDAIMGKGQIQLDPQ 93 (118)
T ss_pred cccccccC-cccEEEEEEEEECHH
Confidence 3444 799998888877654
No 189
>PLN03008 Phospholipase D delta
Probab=99.44 E-value=6.2e-13 Score=155.37 Aligned_cols=124 Identities=19% Similarity=0.312 Sum_probs=103.0
Q ss_pred eEEEEEEEEeeCCCCCCC------------------------------------------CCCCCcEEEEEEcCe-EEEe
Q 046822 6 EKLVVEVIAAHNLMPKDG------------------------------------------EGSSSPFVEVEFEKQ-ILRT 42 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~------------------------------------------~g~~dPyv~v~~~~~-~~~T 42 (971)
|.|.|+|.+|++|+.+|. .++|||||+|.++++ ..||
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT 93 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART 93 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence 678899999999985221 247899999999876 4699
Q ss_pred ecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCC-e
Q 046822 43 QVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFS-H 121 (971)
Q Consensus 43 ~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~-~ 121 (971)
+++++++||+|||+|.|.+.++. ..|.|.|||+|.++ +++||++.||+.++.. ++....|++|.+...+. +
T Consensus 94 rVi~n~~NPvWNE~F~f~vah~~----s~L~f~VkD~D~~g--aD~IG~a~IPL~~L~~--Ge~vd~Wl~Ll~~~~kp~k 165 (868)
T PLN03008 94 RVLKNSQEPLWDEKFNISIAHPF----AYLEFQVKDDDVFG--AQIIGTAKIPVRDIAS--GERISGWFPVLGASGKPPK 165 (868)
T ss_pred EeCCCCCCCCcceeEEEEecCCC----ceEEEEEEcCCccC--CceeEEEEEEHHHcCC--CCceEEEEEccccCCCCCC
Confidence 99999999999999999998765 79999999999986 6999999999999865 33346899998875432 3
Q ss_pred eeeEEEEEEEeeeccc
Q 046822 122 IRGEISLKLFVSTTEE 137 (971)
Q Consensus 122 ~~G~i~l~~~~~~~~~ 137 (971)
..|+|+|++.|.+-..
T Consensus 166 ~~~kl~v~lqf~pv~~ 181 (868)
T PLN03008 166 AETAIFIDMKFTPFDQ 181 (868)
T ss_pred CCcEEEEEEEEEEccc
Confidence 4689999999987554
No 190
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.6e-13 Score=150.40 Aligned_cols=124 Identities=34% Similarity=0.574 Sum_probs=109.1
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCC--
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRS-- 82 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~-- 82 (971)
+..+.++|+.|++|.++|..|++||||.+.++..++||+++...+||+|||.|+|...+.. ..+.+.|||.|..
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnst----drikvrvwded~dlk 369 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNST----DRIKVRVWDEDNDLK 369 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCC----ceeEEEEecCcccHH
Confidence 4578999999999999999999999999999999999999999999999999999998765 7999999998753
Q ss_pred --------CCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeecc
Q 046822 83 --------SNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTTE 136 (971)
Q Consensus 83 --------~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 136 (971)
..+|+|||+..|.+.++. +++ .-||.|+++..++.+.|.|++.+...-.+
T Consensus 370 sklrqkl~resddflgqtvievrtls---gem-dvwynlekrtdksavsgairlhisveikg 427 (1283)
T KOG1011|consen 370 SKLRQKLTRESDDFLGQTVIEVRTLS---GEM-DVWYNLEKRTDKSAVSGAIRLHISVEIKG 427 (1283)
T ss_pred HHHHHHhhhcccccccceeEEEEecc---cch-hhhcchhhccchhhccceEEEEEEEEEcC
Confidence 125899999999999984 333 47999999999999999999888775443
No 191
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.43 E-value=7.5e-13 Score=125.20 Aligned_cols=97 Identities=30% Similarity=0.450 Sum_probs=83.2
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc-----CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE-----KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
..+.|+|+|++|++|+..+..+.+||||++.+. ...++|++++++.||.|||+|.|......++.+..|.|+|||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 467899999999999999888899999999984 247899999999999999999997443334445789999999
Q ss_pred CCCCCCCCceeEEEEEeCcccccc
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKN 102 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~ 102 (971)
++.+ ++++||++.++++++...
T Consensus 93 ~~~~--~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 93 EDRF--GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred cCCc--CCeeEEEEEEEcccCCCC
Confidence 9986 589999999999999643
No 192
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.43 E-value=2e-12 Score=122.29 Aligned_cols=96 Identities=26% Similarity=0.353 Sum_probs=79.5
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-----CEEEeeecccCCCCCeecceeEEEeeCC----CcEEEEE
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-----QKWVRTRTVVDSLSPKWNEQYTWEVFDP----CTVITVG 667 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-----~~~~rT~~~~~~~nP~Wne~~~~~v~~~----~~~l~i~ 667 (971)
.+.|+|+|++|++|+..+. .|.+ ||||++.+. ....||+++.++.||.|||.|.|..... ...|.|+
T Consensus 14 ~~~L~V~v~~a~~L~~~~~---~~~~-dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~ 89 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDA---NGLS-DPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLL 89 (123)
T ss_pred CCEEEEEEEEeeCCCCCCC---CCCC-CceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEE
Confidence 4689999999999987643 6778 999999972 2468999999999999999999974432 3589999
Q ss_pred EEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEe
Q 046822 668 VFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYT 706 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~ 706 (971)
|||++.+ .+++||++.++|++|..+....
T Consensus 90 v~d~~~~----------~~~~iG~~~i~l~~l~~~~~~~ 118 (123)
T cd04035 90 VLDEDRF----------GNDFLGETRIPLKKLKPNQTKQ 118 (123)
T ss_pred EEEcCCc----------CCeeEEEEEEEcccCCCCcceE
Confidence 9999843 5899999999999998776433
No 193
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.41 E-value=2e-12 Score=121.12 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=81.4
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE--CC---EEEeeecccCCC-CCeecceeEEEeeCCC--cEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY--GQ---KWVRTRTVVDSL-SPKWNEQYTWEVFDPC--TVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~--g~---~~~rT~~~~~~~-nP~Wne~~~~~v~~~~--~~l~i 666 (971)
+..|.|.|.|++|+||+++. + .+.. ||||++.+ ++ .+.+|+++++++ ||.|||.|.|+|.... ..|.|
T Consensus 11 p~~~rLtV~VikarnL~~~~--~-~~~~-dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v 86 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSS--T-PLTL-SFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLI 86 (135)
T ss_pred CcCCeEEEEEEEccCCCccc--C-CCCC-CcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEE
Confidence 66789999999999999863 2 3455 99999997 22 358899999996 6999999999998532 37999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
+|||++..+ ++++||++.+..+... +...++|....
T Consensus 87 ~v~d~~~~~---------~n~~IG~v~lG~~~~~-~~~~~hW~~m~ 122 (135)
T cd08692 87 KLYSRSSVR---------RKHFLGQVWISSDSSS-SEAVEQWKDTI 122 (135)
T ss_pred EEEeCCCCc---------CCceEEEEEECCccCC-chhhhhHHHHH
Confidence 999998665 8999999999997642 22236776655
No 194
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.41 E-value=5.9e-13 Score=127.97 Aligned_cols=105 Identities=19% Similarity=0.316 Sum_probs=85.8
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC--C---EEEeeecccCCCCCeecceeEEEeeC--CC-cEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG--Q---KWVRTRTVVDSLSPKWNEQYTWEVFD--PC-TVITV 666 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g--~---~~~rT~~~~~~~nP~Wne~~~~~v~~--~~-~~l~i 666 (971)
+..+.|.|+|++|+||++.+ .|.+ ||||++.+. . ...||++++++.||.|||.|.|.+.. .. ..|.|
T Consensus 12 ~~~~~L~V~V~~a~nL~~~~----~~~~-d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~ 86 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQLD----HAHT-SVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSL 86 (137)
T ss_pred CCCCeEEEEEEEecCCCccc----CCCC-CeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEE
Confidence 34578999999999998764 4667 999999973 2 35789999999999999999999963 23 48999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
+|||.+.++ ++++||++.|.......+...++|..+..
T Consensus 87 ~V~~~~~~~---------~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 87 SVMQSGGVR---------KSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EEEeCCCCC---------CcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 999999654 89999999999876666666678887763
No 195
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.6e-13 Score=141.39 Aligned_cols=218 Identities=16% Similarity=0.224 Sum_probs=155.4
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
++.++..++..|++|.+++.++..|||+.+.++. .+.+|++..+++||.|||+-.......+......+++.|.|
T Consensus 91 ~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcd 170 (362)
T KOG1013|consen 91 ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCD 170 (362)
T ss_pred hhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeecc
Confidence 4567899999999999999999999999999973 36889999999999999987776444444556788999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeecccccccCCCCCCCCCCccccccc
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTTEEVVKKGGFVSSLTPSSAFSKKN 158 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~e~~~~~~~~~k~~ 158 (971)
.+.+. .++++|+..+++..+..........|+.-.-+ .. . +
T Consensus 171 n~~~~-~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp-------------------~~---------r---a------- 211 (362)
T KOG1013|consen 171 NDKKT-HNESQGQSRVSLKKLKPLQRKSFNICLEKSLP-------------------SE---------R---A------- 211 (362)
T ss_pred Ccccc-cccCcccchhhhhccChhhcchhhhhhhccCC-------------------cc---------c---c-------
Confidence 99986 78999999998888854332221112111100 00 0 0
Q ss_pred cccccCCCcccccccccCCCCCCCCCccccCccCcCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcCCCCCCCCccCC
Q 046822 159 KKLQQQSPVMQVQQQHFGHQDMMSKPTHQQQSQNHVKPMEPNPGELKPVVITTAPRPVIPGARGGPTFGGGGGGGVYVNG 238 (971)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 238 (971)
+ ...+|+.+ .++.
T Consensus 212 d-----------------------------~~~~E~rg-------------------~i~i------------------- 224 (362)
T KOG1013|consen 212 D-----------------------------RDEDEERG-------------------AILI------------------- 224 (362)
T ss_pred c-----------------------------ccchhhcc-------------------ceee-------------------
Confidence 0 00000000 0000
Q ss_pred CCCcccccCCCCCCCCCCcccccccccccccceeEEEEEEEEeecCC---CCCCCCeEEEEEECC-----eeeeeeeecC
Q 046822 239 SGEFSLKETSPHLGGGPLNKDKTSSTYDLVEQMQYLYVRVVKARDIS---LFGGGEIVAEVKLGN-----YRGITKRVSS 310 (971)
Q Consensus 239 ~~~~~~~~~~p~~~~~~~~~~~~~~~~d~v~~~~~L~V~v~~a~~L~---~~~~~dpyV~v~~~~-----~~~kT~~~~~ 310 (971)
..++......|.|.+++|.+|. .+|.+||||..++.. .+.+|.+.++
T Consensus 225 -------------------------sl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~ 279 (362)
T KOG1013|consen 225 -------------------------SLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK 279 (362)
T ss_pred -------------------------eeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc
Confidence 0111111255888999999988 778999999999862 5778999999
Q ss_pred C-CCccccEEEEecc--CCCcceEEEEEecC---CCCcccEEEEEEcc
Q 046822 311 N-HLQWDQVFAFSKD--CIQSSAAEIFVKES---DKDDFLGRIWFDLN 352 (971)
Q Consensus 311 ~-nP~wne~f~f~~~--~~~~~~l~v~v~D~---~~d~~lG~~~i~l~ 352 (971)
+ ||+||+.|.|.+. ++....+.|.|||. ...+++|-+...+.
T Consensus 280 t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 280 TLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred cCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc
Confidence 9 9999999999887 45667899999998 58899988776543
No 196
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.38 E-value=3.4e-12 Score=122.50 Aligned_cols=105 Identities=13% Similarity=0.205 Sum_probs=85.2
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC---C---EEEeeecccCCCCCeecceeEEEeeC---CCcEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---Q---KWVRTRTVVDSLSPKWNEQYTWEVFD---PCTVIT 665 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g---~---~~~rT~~~~~~~nP~Wne~~~~~v~~---~~~~l~ 665 (971)
...+.|.|+|++|+||++++ ..|.+ ||||++.+. + .+.||++++++.||+|||.|.|++.. ....|.
T Consensus 12 ~~~~~L~V~VikarnL~~~~---~~~~~-dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~ 87 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNLA---MNKAP-DTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLM 87 (138)
T ss_pred CCCCeEEEEEEEecCCCccc---cCCCC-CeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEE
Confidence 45689999999999999864 36778 999999983 2 24799999999999999999999973 334899
Q ss_pred EEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEecee
Q 046822 666 VGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLM 713 (971)
Q Consensus 666 i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 713 (971)
|+|||.+.++ ++++||++.+++.....+ ...+|+.+..
T Consensus 88 ~~V~~~~~~~---------~~~~iG~v~l~~~~~~~~-~~~hW~~~l~ 125 (138)
T cd08408 88 FSVYNKRKMK---------RKEMIGWFSLGLNSSGEE-EEEHWNEMKE 125 (138)
T ss_pred EEEEECCCCC---------CCcEEEEEEECCcCCCch-HHHHHHHHHh
Confidence 9999999765 899999999999865432 2257877753
No 197
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=99.37 E-value=8.6e-12 Score=139.06 Aligned_cols=245 Identities=20% Similarity=0.228 Sum_probs=162.5
Q ss_pred eEEEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEEEEeCcCC----CCCceeEEEEEecccccccccccccccee
Q 046822 464 QFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGP----GKDEIVGKVLIPVSAVERRTDDKQVVSRW 539 (971)
Q Consensus 464 ~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d~d~~----~~d~~iG~~~i~L~~l~~~~~~~~~~~~w 539 (971)
+..||.++ .+.+||.|.+.|.+.+..+..|.|++.++|.+.. ...+|+|++...++.+......+ .-
T Consensus 41 e~~rte~i-----~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~----~~ 111 (529)
T KOG1327|consen 41 EVGRTEVI-----RNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLT----GP 111 (529)
T ss_pred cccceeee-----eccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhh----hh
Confidence 46688998 8999999999999999999999999999997653 45789999999999887553110 00
Q ss_pred EEcccCCCCCCCcceeeeeeeeeEEEEEccCcccccCccccccCCCcccccccCCCceeEEEEEEEeeeCCCCCCccCCC
Q 046822 540 FNLENHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEATLYSSDVKPTAKQLWKPHIGVLEMGILGATGLMPMKFKEGK 619 (971)
Q Consensus 540 ~~L~~~~~~~~~~~~~~~~~g~i~l~l~l~~~~~~~~~~~~~~sd~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~~~~ 619 (971)
..++... ....|.|.+.+. +..+ . -....-..+|.+|.. +|..
T Consensus 112 l~~~~~~---------~~~~g~iti~ae--e~~~---------~--------------~~~~~~~~~~~~ld~---kd~f 154 (529)
T KOG1327|consen 112 LLLKPGK---------NAGSGTITISAE--EDES---------D--------------NDVVQFSFRAKNLDP---KDFF 154 (529)
T ss_pred hhcccCc---------cCCcccEEEEee--cccc---------c--------------CceeeeeeeeeecCc---cccc
Confidence 1222111 011344544432 1110 0 011122345788865 4669
Q ss_pred CcccCcEEEEEE--C-CE---EEeeecccCCCCCeecceeEEEee-----CCCcEEEEEEEeCCCCCccccCCCCCCCce
Q 046822 620 GGSVDAYCVAKY--G-QK---WVRTRTVVDSLSPKWNEQYTWEVF-----DPCTVITVGVFDNCSLDKNIINNSGGRDSR 688 (971)
Q Consensus 620 g~s~dpy~~~~~--g-~~---~~rT~~~~~~~nP~Wne~~~~~v~-----~~~~~l~i~V~D~~~~~~~~~~~~~~~d~~ 688 (971)
+++ |||..+.- | +. .+||.+++++++|.|. .|.++.. ++...+.|.|||++.. +++++
T Consensus 155 ~ks-d~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~---------~~~~~ 223 (529)
T KOG1327|consen 155 SKS-DPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSN---------GKHDL 223 (529)
T ss_pred ccC-CcceEEEEecCCCceeeccccceeccCCCCccc-ccccchhhhcccCCCCceEEEEeccCCC---------CCcCc
Confidence 999 99998874 2 33 3899999999999998 4555443 4556899999999954 48999
Q ss_pred eEEEEEEcccccCCceEeeeEeceecCCCCcc----cceEEEE-------------------EEEEeecchhHHHHhhcC
Q 046822 689 IGKVRIRLSTLESDRVYTHSYPLLMLHPSGVK----KMGELHL-------------------AVRFSCANLVNMLHMYAM 745 (971)
Q Consensus 689 iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~----~~G~i~l-------------------~~~f~~~~~~~~~~~~~~ 745 (971)
||++..++++++.. .....+++.+.+.+..+ ..|.+.+ .+.|+ +.+++.++|+.
T Consensus 224 ig~~~tt~~~~~~~-~~~~~~~~~~~~~~~~~k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~--vgIDfTaSNg~ 300 (529)
T KOG1327|consen 224 IGKFQTTLSELQEP-GSPNQIMLINPKKKAKKKSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFT--VGIDFTASNGD 300 (529)
T ss_pred eeEecccHHHhccc-CCcccccccChhhhhhhhcccccceEEehheeehhhhhHHHHHccCceeeeE--EEEEEeccCCC
Confidence 99999999999631 11234455543322111 1455543 12222 23344499999
Q ss_pred CCCCC-CcccCCCchhhHHHHHHH
Q 046822 746 PLLPK-MHYVHPLSVHQLETLRYQ 768 (971)
Q Consensus 746 p~~p~-~~y~~p~~~~~~~~l~~~ 768 (971)
|..|. +||++|..+++|++.-..
T Consensus 301 p~~~sSLHyi~p~~~N~Y~~Ai~~ 324 (529)
T KOG1327|consen 301 PRNPSSLHYIDPHQPNPYEQAIRS 324 (529)
T ss_pred CCCCCcceecCCCCCCHHHHHHHH
Confidence 99877 999999888888765443
No 198
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.35 E-value=3.7e-12 Score=117.88 Aligned_cols=94 Identities=20% Similarity=0.236 Sum_probs=76.0
Q ss_pred EEEEeeeCCCCCCccCCCCcccCcEEEEEECC------EEEeeecccCCCCCeecceeEEEeeC-----CCcEEEEEEEe
Q 046822 602 MGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ------KWVRTRTVVDSLSPKWNEQYTWEVFD-----PCTVITVGVFD 670 (971)
Q Consensus 602 v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~------~~~rT~~~~~~~nP~Wne~~~~~v~~-----~~~~l~i~V~D 670 (971)
+-.++|++|+.++ ..|++ ||||++.+++ ..++|+++++++||.|| .|.|++.+ +...|.|+|||
T Consensus 4 ~~~i~a~~L~~~d---~~~~~-DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d 78 (110)
T cd04047 4 ELQFSGKKLDKKD---FFGKS-DPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYD 78 (110)
T ss_pred EEEEEeCCCCCCC---CCCCC-CeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEE
Confidence 3456899998765 47888 9999999843 24899999999999999 78887643 25699999999
Q ss_pred CCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEec
Q 046822 671 NCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPL 711 (971)
Q Consensus 671 ~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 711 (971)
++.++ +|++||++.+++++|..++ ..++.+
T Consensus 79 ~d~~~---------~d~~iG~~~~~l~~l~~~~--~~~~~~ 108 (110)
T cd04047 79 YDSSG---------KHDLIGEFETTLDELLKSS--PLEFEL 108 (110)
T ss_pred eCCCC---------CCcEEEEEEEEHHHHhcCC--CceEEe
Confidence 99775 8999999999999997554 345554
No 199
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=6.9e-13 Score=136.68 Aligned_cols=230 Identities=16% Similarity=0.171 Sum_probs=163.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEECC-----eEEEeeecCCCCCCCCCCCcccceeEE--EeecCC-CCeE
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGN-----QFLKTRIAAPSATRSLSNPCWNEDLLF--VVAEPF-EDYL 500 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~-----~~~rT~~~~~~~~~~~~nP~w~e~f~f--~~~~~~-~~~L 500 (971)
.+..++.+|++|++++.+ +..|||++..++. ..+||++. .+++||.|+|.... ...++. ...+
T Consensus 94 ~~~~tl~~a~~lk~~~~~----~~~d~~~~~~llpga~kl~slr~~t~-----~n~lN~~w~etev~~~i~~~~~~~K~~ 164 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDIN----GLADPYVKLHLLPGAGKLNSLRTKTT-----RNTLNPEWNETEVYEGITDDDTHLKVL 164 (362)
T ss_pred hcceeechhcccchhhhh----hhcchHHhhhcccchhhhhhhhHHhh-----ccCcCcceeccceecccccchhhhhhh
Confidence 467889999999999999 8999999999852 45788888 89999999998543 333332 3478
Q ss_pred EEEEEeCcCCCCCceeEEEEEeccccccccccccccceeEEcccCCCCCCCcceeeeeeeeeEEEEEccCcccccCcccc
Q 046822 501 LISVEDHVGPGKDEIVGKVLIPVSAVERRTDDKQVVSRWFNLENHFGNQGESKVVTRFGSRIHLRVSLDGGYHVLDEATL 580 (971)
Q Consensus 501 ~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~g~i~l~l~l~~~~~~~~~~~~ 580 (971)
++.|+|.+.+...+++|+..+++..+..++. .....|+.-..+.+ + .........|+|.+.+...
T Consensus 165 Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~--k~f~~cl~~~lp~~-r-ad~~~~E~rg~i~isl~~~----------- 229 (362)
T KOG1013|consen 165 RKVVCDNDKKTHNESQGQSRVSLKKLKPLQR--KSFNICLEKSLPSE-R-ADRDEDEERGAILISLAYS----------- 229 (362)
T ss_pred heeeccCcccccccCcccchhhhhccChhhc--chhhhhhhccCCcc-c-ccccchhhccceeeeeccC-----------
Confidence 9999999988889999999999888776542 23344444333321 0 0011123345555544211
Q ss_pred ccCCCcccccccCCCceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC---CE--EEeeecccCCCCCeecceeEE
Q 046822 581 YSSDVKPTAKQLWKPHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG---QK--WVRTRTVVDSLSPKWNEQYTW 655 (971)
Q Consensus 581 ~~sd~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g---~~--~~rT~~~~~~~nP~Wne~~~~ 655 (971)
....-|.+++++|..|..+|. +|.+ |||+..++. ++ +.+|.+.+++++|.||++|.|
T Consensus 230 --------------s~~~~l~vt~iRc~~l~ssDs---ng~s-DpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~ 291 (362)
T KOG1013|consen 230 --------------STTPGLIVTIIRCSHLASSDS---NGYS-DPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFY 291 (362)
T ss_pred --------------cCCCceEEEEEEeeeeecccc---CCCC-CccceeecCCCcchhhcccCcchhccCCccccccccc
Confidence 223568899999999998876 7889 999999983 22 378899999999999999999
Q ss_pred EeeCCC---cEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEec
Q 046822 656 EVFDPC---TVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPL 711 (971)
Q Consensus 656 ~v~~~~---~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 711 (971)
.+.... ..+.|.|||.+.- ...+++|-+..-+.. .+....+|+..
T Consensus 292 ~i~pgdLa~~kv~lsvgd~~~G---------~s~d~~GG~~~g~~r--r~~v~~h~gr~ 339 (362)
T KOG1013|consen 292 DIGPGDLAYKKVALSVGDYDIG---------KSNDSIGGSMLGGYR--RGEVHKHWGRC 339 (362)
T ss_pred cCCccchhcceEEEeecccCCC---------cCccCCCcccccccc--cchhhcCcccc
Confidence 987432 2899999999843 367788876654433 23333455543
No 200
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.33 E-value=2.7e-12 Score=164.01 Aligned_cols=120 Identities=17% Similarity=0.269 Sum_probs=100.1
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCC
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRS 82 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~ 82 (971)
-.|.|+|+|++|.||. +..|.+||||++.++++ +++|++++++.||+|||.|.|.+.++.. ++.|.|+|||+|.+
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~--~~~l~iev~d~d~f 2053 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPK--GQKLHISCKSKNTF 2053 (2102)
T ss_pred CCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCC--CCceEEEEEecCcc
Confidence 3689999999999998 33689999999999966 8899999999999999999988877642 36799999999998
Q ss_pred CCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeE---EEEEEEeee
Q 046822 83 SNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGE---ISLKLFVST 134 (971)
Q Consensus 83 ~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~---i~l~~~~~~ 134 (971)
+ ++.||.+.|++.++... .....||+|.+.+.+ .|. |.+.+.|.+
T Consensus 2054 ~--kd~~G~~~i~l~~vv~~--~~~~~~~~L~~~~~k---~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 G--KSSLGKVTIQIDRVVME--GTYSGEYSLNPESNK---DGSSRTLEIEFQWSN 2101 (2102)
T ss_pred C--CCCCceEEEEHHHHhcC--ceeeeeeecCccccc---CCCcceEEEEEEecC
Confidence 5 56999999999999763 334589999865433 366 999888753
No 201
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.33 E-value=5.7e-12 Score=116.63 Aligned_cols=91 Identities=24% Similarity=0.443 Sum_probs=75.4
Q ss_pred EEEEEEeeCCCCCCCCCCCCcEEEEEEcCe------EEEeecccCCCCCeeeeeeEEecCCCCCC-CcceEEEEEEeCCC
Q 046822 9 VVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ------ILRTQVKYKDLNPIWNEKLVFDVPDIAEL-PYKHIEVNVFNERR 81 (971)
Q Consensus 9 ~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~------~~~T~~~~~t~nP~wne~f~f~v~~~~~l-~~~~L~i~V~d~~~ 81 (971)
.+-.++|++|+.+|..|.+||||++.+.++ .++|+++++++||.|| .|.|.+...... ....|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 345679999999999999999999998653 5899999999999999 688875422110 13799999999999
Q ss_pred CCCCCceeEEEEEeCccccc
Q 046822 82 SSNSRNFLGKVRAPCSQLCK 101 (971)
Q Consensus 82 ~~~~d~~lG~~~i~l~~l~~ 101 (971)
.+ +|++||++.++++++..
T Consensus 82 ~~-~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 82 SG-KHDLIGEFETTLDELLK 100 (110)
T ss_pred CC-CCcEEEEEEEEHHHHhc
Confidence 86 79999999999999973
No 202
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.30 E-value=1.3e-11 Score=108.25 Aligned_cols=82 Identities=29% Similarity=0.560 Sum_probs=73.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEcC---eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCC
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEK---QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSN 84 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~ 84 (971)
|.|+|++|+||...+..+.+||||++.+.+ ..++|++++++.+|.|||+|.|.+..... ..|.|+|||.+..+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~---~~l~~~V~~~~~~~- 76 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDL---DSLSFEVWDKDSFG- 76 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCG---TEEEEEEEEETSSS-
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccc---cceEEEEEECCCCC-
Confidence 789999999999988888999999999997 67999999999999999999999765542 56999999999986
Q ss_pred CCceeEEEE
Q 046822 85 SRNFLGKVR 93 (971)
Q Consensus 85 ~d~~lG~~~ 93 (971)
+|++||++.
T Consensus 77 ~~~~iG~~~ 85 (85)
T PF00168_consen 77 KDELIGEVK 85 (85)
T ss_dssp SEEEEEEEE
T ss_pred CCCEEEEEC
Confidence 699999974
No 203
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=2.2e-11 Score=133.93 Aligned_cols=127 Identities=27% Similarity=0.406 Sum_probs=100.5
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCc
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDK 676 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~ 676 (971)
...+.++|+.|+||.+. |..|+| ||||.+.+|..+.||+++...+||+|||.|+|++++....|++.|||+|..-.
T Consensus 294 sakitltvlcaqgl~ak---dktg~s-dpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlk 369 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAK---DKTGKS-DPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLK 369 (1283)
T ss_pred ceeeEEeeeecccceec---ccCCCC-CCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHH
Confidence 45788999999999875 458999 99999999999999999999999999999999999999999999999984320
Q ss_pred cc--cCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEE
Q 046822 677 NI--INNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVR 730 (971)
Q Consensus 677 ~~--~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 730 (971)
.+ -.-...+|||+|+..|-+..|.... +.||.|.....+.. .+|.|+|.|.
T Consensus 370 sklrqkl~resddflgqtvievrtlsgem--dvwynlekrtdksa-vsgairlhis 422 (1283)
T KOG1011|consen 370 SKLRQKLTRESDDFLGQTVIEVRTLSGEM--DVWYNLEKRTDKSA-VSGAIRLHIS 422 (1283)
T ss_pred HHHHHHhhhcccccccceeEEEEecccch--hhhcchhhccchhh-ccceEEEEEE
Confidence 00 0012358999999999999987544 78999975433221 2577766444
No 204
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.20 E-value=8.2e-11 Score=103.07 Aligned_cols=82 Identities=32% Similarity=0.506 Sum_probs=74.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCCceEEEEEECC---eEEEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEEEEe
Q 046822 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQVGN---QFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVED 506 (971)
Q Consensus 430 L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~g~---~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d 506 (971)
|+|+|++|+||...+.. +.+||||++.+++ ..++|+++ .++.+|.|+|.|.|.+..+..+.|.|+|||
T Consensus 1 L~v~I~~a~~L~~~~~~----~~~~~yv~v~~~~~~~~~~~T~~~-----~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~ 71 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSN----GKPDPYVRVSVNGSESTKYKTKVK-----KNTSNPVWNEEFEFPLDDPDLDSLSFEVWD 71 (85)
T ss_dssp EEEEEEEEESSSSSSTT----SSBEEEEEEEEETTTCEEEEECCB-----SSBSSEEEEEEEEEEESHGCGTEEEEEEEE
T ss_pred CEEEEEEEECCCCcccC----Ccccccceeecceeeeeeeeeeee-----eccccceeeeeeeeeeecccccceEEEEEE
Confidence 68999999999987766 7999999999976 67999999 888999999999999888888889999999
Q ss_pred CcCCCCCceeEEEE
Q 046822 507 HVGPGKDEIVGKVL 520 (971)
Q Consensus 507 ~d~~~~d~~iG~~~ 520 (971)
++..+++++||++.
T Consensus 72 ~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 72 KDSFGKDELIGEVK 85 (85)
T ss_dssp ETSSSSEEEEEEEE
T ss_pred CCCCCCCCEEEEEC
Confidence 98888899999974
No 205
>PLN02270 phospholipase D alpha
Probab=99.19 E-value=1.5e-10 Score=135.91 Aligned_cols=126 Identities=18% Similarity=0.243 Sum_probs=106.6
Q ss_pred eeEEEEEEEeeeCCCCCCc---------------cCCCCcccCcEEEEEECCEE-EeeecccCC-CCCeecceeEEEeeC
Q 046822 597 IGVLEMGILGATGLMPMKF---------------KEGKGGSVDAYCVAKYGQKW-VRTRTVVDS-LSPKWNEQYTWEVFD 659 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~---------------~~~~g~s~dpy~~~~~g~~~-~rT~~~~~~-~nP~Wne~~~~~v~~ 659 (971)
-|.|.|+|++|++|+.++. ..+++.| |||+.+.+++.+ .||+++.+. .||.|||.|.+++..
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah 85 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGES-QLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH 85 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCC-CceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence 4899999999999986310 1235778 999999998765 699999875 699999999999999
Q ss_pred CCcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEee
Q 046822 660 PCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSC 733 (971)
Q Consensus 660 ~~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 733 (971)
+.+.|+|+|.|.|.++ ..+||++.||+.+|..|...++||++.+.+.+-.+...+|+++++|+.
T Consensus 86 ~~~~v~f~vkd~~~~g----------~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~ 149 (808)
T PLN02270 86 MASNIIFTVKDDNPIG----------ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFE 149 (808)
T ss_pred CcceEEEEEecCCccC----------ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEE
Confidence 9999999999999886 469999999999999999999999999766544444458999999985
No 206
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.14 E-value=2.6e-10 Score=106.96 Aligned_cols=93 Identities=19% Similarity=0.216 Sum_probs=77.4
Q ss_pred EEEEEEeeeCCCCCCccCCCC--cccCcEEEEEEC---CEEEeeecccCCCC--CeecceeEEEeeCC------------
Q 046822 600 LEMGILGATGLMPMKFKEGKG--GSVDAYCVAKYG---QKWVRTRTVVDSLS--PKWNEQYTWEVFDP------------ 660 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g--~s~dpy~~~~~g---~~~~rT~~~~~~~n--P~Wne~~~~~v~~~------------ 660 (971)
|+|.|.+|+|++..+. +..| .+ ||||++.+. ....+|.++++++| |.||+.|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~-~~~g~~~s-D~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 2 LRVIVWNTRDVLNDDT-NITGEKMS-DIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred EEEEEEECcCCccccc-ccCCcccc-CeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 7999999999775443 3345 47 999999984 35699999999999 99999999987641
Q ss_pred ------------CcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCc
Q 046822 661 ------------CTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDR 703 (971)
Q Consensus 661 ------------~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~ 703 (971)
...|+|+|||+|.++ +|++||.+.++|+.+..+.
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s---------~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDKFS---------PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcccC---------CCCcceEEEEEhhhccccc
Confidence 238999999999886 8999999999999987654
No 207
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.12 E-value=1.3e-11 Score=137.80 Aligned_cols=126 Identities=32% Similarity=0.557 Sum_probs=104.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-------------------------------eEEEeecccCCCCCeee
Q 046822 6 EKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-------------------------------QILRTQVKYKDLNPIWN 54 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-------------------------------~~~~T~~~~~t~nP~wn 54 (971)
..|.|.+.+|+||-++|.+|.||||+...+.. -.+-|.++++|+||.|+
T Consensus 114 ~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~ 193 (1103)
T KOG1328|consen 114 VLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWS 193 (1103)
T ss_pred HHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchh
Confidence 34567788899999999999999999987720 03558899999999999
Q ss_pred eeeEEecCCCCCCCcceEEEEEEeCCCC--------------------------------CCC---CceeEEEEEeCccc
Q 046822 55 EKLVFDVPDIAELPYKHIEVNVFNERRS--------------------------------SNS---RNFLGKVRAPCSQL 99 (971)
Q Consensus 55 e~f~f~v~~~~~l~~~~L~i~V~d~~~~--------------------------------~~~---d~~lG~~~i~l~~l 99 (971)
|.|.|.+.+.. ...+.+.+||+|.- ++. |||||++.||++++
T Consensus 194 EkF~F~IeDv~---tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei 270 (1103)
T KOG1328|consen 194 EKFQFTIEDVQ---TDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI 270 (1103)
T ss_pred hheeeehhccc---cceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence 99999987654 58999999999631 112 79999999999999
Q ss_pred cccCCcccceEEEeEeCCCCCeeeeEEEEEEEeeeccc
Q 046822 100 CKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVSTTEE 137 (971)
Q Consensus 100 ~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~ 137 (971)
-. ....+||.|++++.+++++|.+++++++.....
T Consensus 271 P~---~Gld~WFkLepRS~~S~VqG~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 271 PP---DGLDQWFKLEPRSDKSKVQGQVKLKLWLSTKEE 305 (1103)
T ss_pred Cc---chHHHHhccCcccccccccceEEEEEEEeeecc
Confidence 43 234689999999999999999999999986554
No 208
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.11 E-value=3.2e-10 Score=106.36 Aligned_cols=93 Identities=23% Similarity=0.320 Sum_probs=78.8
Q ss_pred EEEEEEEeeCCCCCC--CCC--CCCcEEEEEEcC---eEEEeecccCCCC--CeeeeeeEEecCCC--------------
Q 046822 8 LVVEVIAAHNLMPKD--GEG--SSSPFVEVEFEK---QILRTQVKYKDLN--PIWNEKLVFDVPDI-------------- 64 (971)
Q Consensus 8 L~V~V~~a~~L~~~d--~~g--~~dPyv~v~~~~---~~~~T~~~~~t~n--P~wne~f~f~v~~~-------------- 64 (971)
|+|.|.+|+|++..+ ..| .+||||++.+.+ ..++|.++++++| |.||+.|.|.+..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999966543 355 599999999985 4799999999999 99999999986541
Q ss_pred ------CCCCcceEEEEEEeCCCCCCCCceeEEEEEeCccccc
Q 046822 65 ------AELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCK 101 (971)
Q Consensus 65 ------~~l~~~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~ 101 (971)
+.+....|.++|||.|.++ +|++||++.++|..+..
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s-~dd~iG~~~l~l~~l~~ 123 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFS-PDDFLGSLELDLSILPR 123 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccC-CCCcceEEEEEhhhccc
Confidence 3355689999999999987 89999999999998854
No 209
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.09 E-value=6.4e-10 Score=100.30 Aligned_cols=99 Identities=31% Similarity=0.529 Sum_probs=83.5
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-EEEeeecccCCCCCeecceeEEEeeC-CCcEEEEEEEeCCCCCcc
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-KWVRTRTVVDSLSPKWNEQYTWEVFD-PCTVITVGVFDNCSLDKN 677 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-~~~rT~~~~~~~nP~Wne~~~~~v~~-~~~~l~i~V~D~~~~~~~ 677 (971)
|.|.|++|++|..... .+.. ||||.+.+.+ ..++|+++.++.||.||+.|.|++.. ....|.|+|||.+..+
T Consensus 1 l~v~i~~~~~l~~~~~---~~~~-~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~-- 74 (102)
T cd00030 1 LRVTVIEARNLPAKDL---NGKS-DPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS-- 74 (102)
T ss_pred CEEEEEeeeCCCCcCC---CCCC-CcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC--
Confidence 4689999999986432 4566 9999999987 88999999999999999999999998 6679999999998553
Q ss_pred ccCCCCCCCceeEEEEEEccccc-CCceEeeeEec
Q 046822 678 IINNSGGRDSRIGKVRIRLSTLE-SDRVYTHSYPL 711 (971)
Q Consensus 678 ~~~~~~~~d~~iG~~~i~l~~l~-~~~~~~~~~~L 711 (971)
.+.+||.+.+++.++. .+.....|++|
T Consensus 75 -------~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 -------KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred -------CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6899999999999997 55555667764
No 210
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.08 E-value=6.5e-10 Score=100.28 Aligned_cols=101 Identities=39% Similarity=0.599 Sum_probs=84.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCC
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSR 86 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d 86 (971)
|.|+|++|++|......+..+|||.+.+.+ ..++|++..++.||.|||.|.|.+.... ...|.|+|||.+..+ ++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~---~~~l~i~v~~~~~~~-~~ 76 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPE---SDTLTVEVWDKDRFS-KD 76 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCC---CCEEEEEEEecCCCC-CC
Confidence 579999999998876677899999999998 8899999999999999999999988632 378999999999875 68
Q ss_pred ceeEEEEEeCccccccCCcccceEEEe
Q 046822 87 NFLGKVRAPCSQLCKNEGEATAQLYTL 113 (971)
Q Consensus 87 ~~lG~~~i~l~~l~~~~~~~~~~w~~L 113 (971)
.++|++.+++.++... ......|++|
T Consensus 77 ~~ig~~~~~l~~l~~~-~~~~~~~~~l 102 (102)
T cd00030 77 DFLGEVEIPLSELLDS-GKEGELWLPL 102 (102)
T ss_pred ceeEEEEEeHHHhhhc-CCcCcceecC
Confidence 9999999999998721 2233467764
No 211
>PLN02223 phosphoinositide phospholipase C
Probab=99.08 E-value=1.4e-09 Score=123.08 Aligned_cols=122 Identities=20% Similarity=0.290 Sum_probs=91.5
Q ss_pred eeEEEEEEEeeeCCCCC-CccCCCCcccCcEEEEEEC-----CEEEeeecccCCCCCeecceeEEEeeCCCc-EEEEEEE
Q 046822 597 IGVLEMGILGATGLMPM-KFKEGKGGSVDAYCVAKYG-----QKWVRTRTVVDSLSPKWNEQYTWEVFDPCT-VITVGVF 669 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~-~~~~~~g~s~dpy~~~~~g-----~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~-~l~i~V~ 669 (971)
...|.|+|+.|++++.. +.+-+.+..+||||+|.+. ....+|.+..++.||.|||.|.|++..|.. .|.|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 46799999999998621 1111222334999999983 335788877888999999999999998876 8999999
Q ss_pred eCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 670 DNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 670 D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
|+|... +|+|||+..+|++.|..|. +..||.+.+..... .-+|.+.++|
T Consensus 488 D~D~~~---------~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~-~~~Ll~~f~~ 536 (537)
T PLN02223 488 DYEVST---------ADAFCGQTCLPVSELIEGI---RAVPLYDERGKACS-STMLLTRFKW 536 (537)
T ss_pred ecCCCC---------CCcEEEEEecchHHhcCCc---eeEeccCCCcCCCC-CceEEEEEEe
Confidence 999654 8999999999999999987 77899865543322 2445555443
No 212
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.02 E-value=2e-09 Score=97.29 Aligned_cols=91 Identities=33% Similarity=0.500 Sum_probs=77.8
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE---EEeeecccCCCCCeecceeEEEeeCC-CcEEEEEEEeCCCCC
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK---WVRTRTVVDSLSPKWNEQYTWEVFDP-CTVITVGVFDNCSLD 675 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~---~~rT~~~~~~~nP~Wne~~~~~v~~~-~~~l~i~V~D~~~~~ 675 (971)
|.+.|++|++|..... .+.. +|||+++++.. ..+|+++.++.||.||+.|.|++..+ ...|.|+|||.+..+
T Consensus 2 l~i~i~~~~~l~~~~~---~~~~-~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~ 77 (101)
T smart00239 2 LTVKIISARNLPKKDK---KGKS-DPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG 77 (101)
T ss_pred eEEEEEEeeCCCCCCC---CCCC-CceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc
Confidence 6799999999986432 2445 99999999754 79999999999999999999999987 779999999998543
Q ss_pred ccccCCCCCCCceeEEEEEEcccccCCc
Q 046822 676 KNIINNSGGRDSRIGKVRIRLSTLESDR 703 (971)
Q Consensus 676 ~~~~~~~~~~d~~iG~~~i~l~~l~~~~ 703 (971)
.+.+||.+.+++.++..+.
T Consensus 78 ---------~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 ---------RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred ---------CCceeEEEEEEHHHcccCc
Confidence 7899999999999987655
No 213
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.01 E-value=2.4e-09 Score=96.74 Aligned_cols=91 Identities=36% Similarity=0.674 Sum_probs=80.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe---EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ---ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSS 83 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~---~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~ 83 (971)
.|.|+|++|++|......+..+|||++++.+. .++|++..++.||.|||.|.|.+.... ...|.|+|||.+..+
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~~l~i~v~~~~~~~ 77 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE---LAELEIEVYDKDRFG 77 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc---cCEEEEEEEecCCcc
Confidence 37899999999998876678999999999975 799999999999999999999988763 389999999998765
Q ss_pred CCCceeEEEEEeCccccc
Q 046822 84 NSRNFLGKVRAPCSQLCK 101 (971)
Q Consensus 84 ~~d~~lG~~~i~l~~l~~ 101 (971)
.+.++|.+.+++.++..
T Consensus 78 -~~~~~G~~~~~l~~~~~ 94 (101)
T smart00239 78 -RDDFIGQVTIPLSDLLL 94 (101)
T ss_pred -CCceeEEEEEEHHHccc
Confidence 68999999999988854
No 214
>PLN02223 phosphoinositide phospholipase C
Probab=98.99 E-value=3.9e-09 Score=119.46 Aligned_cols=119 Identities=17% Similarity=0.257 Sum_probs=90.8
Q ss_pred CeEEEEEEEEeeCCCCC-----CCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEE
Q 046822 5 KEKLVVEVIAAHNLMPK-----DGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEV 74 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~-----d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i 74 (971)
...|.|+|+.|++++.. +.....||||+|.+.| ..++|++..++.||.|||+|.|.+..++. ..|+|
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PEL---AlLrf 484 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDL---ALISF 484 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCc---eEEEE
Confidence 35799999999987521 2234679999999975 35778888899999999999999988773 67999
Q ss_pred EEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 75 NVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 75 ~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
.|+|+|..+ +++|+|+..+|+..+... .++++|..+....-..-.|.+++.+
T Consensus 485 ~V~D~D~~~-~ddfiGQ~~LPv~~Lr~G-----yR~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 485 EVYDYEVST-ADAFCGQTCLPVSELIEG-----IRAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred EEEecCCCC-CCcEEEEEecchHHhcCC-----ceeEeccCCCcCCCCCceEEEEEEe
Confidence 999999865 799999999999999642 2568887664432223455555543
No 215
>PLN02952 phosphoinositide phospholipase C
Probab=98.96 E-value=6.7e-09 Score=120.30 Aligned_cols=120 Identities=20% Similarity=0.262 Sum_probs=92.6
Q ss_pred eeEEEEEEEeeeCCCCCCc---cCCCCcccCcEEEEEE-C----CEEEeeecccCCCCCeecceeEEEeeCCCc-EEEEE
Q 046822 597 IGVLEMGILGATGLMPMKF---KEGKGGSVDAYCVAKY-G----QKWVRTRTVVDSLSPKWNEQYTWEVFDPCT-VITVG 667 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~---~~~~g~s~dpy~~~~~-g----~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~-~l~i~ 667 (971)
...|.|+|+.|++|+.... .+..... ||||++.+ | ....+|+++.++.||.|||.|.|++..|.. .|.|.
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~-D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPP-DFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCC-CceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEE
Confidence 3679999999999863111 1112223 99999997 3 456899999999999999999999998764 89999
Q ss_pred EEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 668 VFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
|||+|..+ .++++|+..+|++.|..|. +++||.+... . +.+...|-++|.
T Consensus 548 V~D~D~~~---------~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G--~-~l~~a~Llv~f~ 597 (599)
T PLN02952 548 VREYDMSE---------KDDFGGQTCLPVSELRPGI---RSVPLHDKKG--E-KLKNVRLLMRFI 597 (599)
T ss_pred EEecCCCC---------CCCeEEEEEcchhHhcCCc---eeEeCcCCCC--C-CCCCEEEEEEEE
Confidence 99998654 7999999999999999987 6899975443 2 225556666654
No 216
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.91 E-value=3.5e-09 Score=115.57 Aligned_cols=124 Identities=29% Similarity=0.487 Sum_probs=103.8
Q ss_pred CeEEEEEEEEeeCCCCCCC-CCCCCcEEEEEEcCeEEEeecccCCCCCeee-eeeEEecCCCCCCCcceEEEEEEeCCCC
Q 046822 5 KEKLVVEVIAAHNLMPKDG-EGSSSPFVEVEFEKQILRTQVKYKDLNPIWN-EKLVFDVPDIAELPYKHIEVNVFNERRS 82 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~-~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wn-e~f~f~v~~~~~l~~~~L~i~V~d~~~~ 82 (971)
.|+|.|+|+.||+|+-+|. ....|.||.+++.+..++|.+..+++||.|| +.|.|++.+. ++++..|.|.+.|+|..
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevdda-dlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDA-DLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChh-hhccCCeeEEEeccccc
Confidence 5789999999999999986 4467999999999999999999999999999 7899999864 58889999999999998
Q ss_pred CCCCceeEEEEEeCcccccc--------CCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 83 SNSRNFLGKVRAPCSQLCKN--------EGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 83 ~~~d~~lG~~~i~l~~l~~~--------~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
+ .++-||++.|+++.+.-. .+.....||++-+.-. .++|+|.+-+.+
T Consensus 81 s-andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih--girgeinvivkv 135 (1169)
T KOG1031|consen 81 S-ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH--GIRGEINVIVKV 135 (1169)
T ss_pred c-cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc--cccceeEEEEEE
Confidence 7 799999999999998422 1234467999876422 467888866654
No 217
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.90 E-value=1.5e-08 Score=116.94 Aligned_cols=122 Identities=19% Similarity=0.243 Sum_probs=91.4
Q ss_pred eeEEEEEEEeeeCCC--CCCccCCCCcccCcEEEEEE-C----CEEEeeecccCCCCCeecceeEEEeeCCCc-EEEEEE
Q 046822 597 IGVLEMGILGATGLM--PMKFKEGKGGSVDAYCVAKY-G----QKWVRTRTVVDSLSPKWNEQYTWEVFDPCT-VITVGV 668 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~--~~~~~~~~g~s~dpy~~~~~-g----~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~-~l~i~V 668 (971)
...|.|+|+.+++++ ..+.....+..+||||+|.+ | ....||+++.++.||.|||.|.|.+..|.- .|.|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 357999999999853 11111112223399999998 2 346899999999999999999999998765 899999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
+|+|..+ .|++||+..+|++.|..|. +..+|.+....... .-.|.+.++|
T Consensus 531 ~d~D~~~---------~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYDMSE---------KDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred EECCCCC---------CCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCC-CeeEEEEEEe
Confidence 9998654 7999999999999999987 67888865443222 2455555554
No 218
>PLN02270 phospholipase D alpha
Probab=98.87 E-value=1.5e-08 Score=119.33 Aligned_cols=125 Identities=18% Similarity=0.294 Sum_probs=101.2
Q ss_pred CeEEEEEEEEeeCCCCCC------------------CCCCCCcEEEEEEcCe-EEEeecccCC-CCCeeeeeeEEecCCC
Q 046822 5 KEKLVVEVIAAHNLMPKD------------------GEGSSSPFVEVEFEKQ-ILRTQVKYKD-LNPIWNEKLVFDVPDI 64 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d------------------~~g~~dPyv~v~~~~~-~~~T~~~~~t-~nP~wne~f~f~v~~~ 64 (971)
-|.|.|+|.+|++|+..+ ..+.+||||.|.+++. ..||+++.+. .||.|||+|.+.+...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 478999999999998531 1357899999999986 5899999885 6999999999999887
Q ss_pred CCCCcceEEEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCe-eeeEEEEEEEeeeccc
Q 046822 65 AELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSH-IRGEISLKLFVSTTEE 137 (971)
Q Consensus 65 ~~l~~~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~~~~~~ 137 (971)
. ..+.|.|.|.+.++ ..+||.+.||..++.. ++....||++.....+.. ..-.|++++.|.+-..
T Consensus 87 ~----~~v~f~vkd~~~~g--~~~ig~~~~p~~~~~~--g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 87 A----SNIIFTVKDDNPIG--ATLIGRAYIPVEEILD--GEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred c----ceEEEEEecCCccC--ceEEEEEEEEHHHhcC--CCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 6 79999999999986 6799999999999875 234568999987754322 2348888998887443
No 219
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.86 E-value=1.8e-08 Score=116.43 Aligned_cols=122 Identities=17% Similarity=0.242 Sum_probs=92.3
Q ss_pred eeEEEEEEEeeeCCCCCCcc--CCCCcccCcEEEEEE-C----CEEEeeecccCCCCCeecceeEEEeeCCCc-EEEEEE
Q 046822 597 IGVLEMGILGATGLMPMKFK--EGKGGSVDAYCVAKY-G----QKWVRTRTVVDSLSPKWNEQYTWEVFDPCT-VITVGV 668 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~--~~~g~s~dpy~~~~~-g----~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~-~l~i~V 668 (971)
...|.|+|+.+++++....+ ...+..+||||+|.+ | ....||++..++.||.|||.|.|++..|.- .|.|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 35799999999997532211 112233499999998 3 345789988999999999999999998765 899999
Q ss_pred EeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 669 FDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 669 ~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
+|+|... +|+|||+..||+..|..|. +..+|.+....... .-.|.+.+.|
T Consensus 548 ~d~d~~~---------~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINE---------KDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred EECCCCC---------CCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCC-CCeeEEEEEe
Confidence 9998654 8999999999999999987 67888765443222 2456655554
No 220
>PLN02952 phosphoinositide phospholipase C
Probab=98.84 E-value=2.3e-08 Score=115.88 Aligned_cols=118 Identities=16% Similarity=0.202 Sum_probs=89.5
Q ss_pred CeEEEEEEEEeeCCCCC------CCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEE
Q 046822 5 KEKLVVEVIAAHNLMPK------DGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIE 73 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~ 73 (971)
...|.|+|+.|++|+.. +.....||||+|.+-+ .+++|+++.++.||.|||+|.|.+..++- ..|+
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PEL---Allr 545 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPEL---ALLR 545 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCc---cEEE
Confidence 45799999999987531 1123459999999864 46899999999999999999999887653 5799
Q ss_pred EEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEE
Q 046822 74 VNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLF 131 (971)
Q Consensus 74 i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 131 (971)
|.|+|+|..+ .++|+|+..+|+..|... .+|++|..+.......-.|.+++.
T Consensus 546 f~V~D~D~~~-~ddfiGq~~lPv~~Lr~G-----yR~VpL~~~~G~~l~~a~Llv~f~ 597 (599)
T PLN02952 546 IEVREYDMSE-KDDFGGQTCLPVSELRPG-----IRSVPLHDKKGEKLKNVRLLMRFI 597 (599)
T ss_pred EEEEecCCCC-CCCeEEEEEcchhHhcCC-----ceeEeCcCCCCCCCCCEEEEEEEE
Confidence 9999999876 799999999999999642 268999766433222334444444
No 221
>PLN02228 Phosphoinositide phospholipase C
Probab=98.82 E-value=4e-08 Score=113.20 Aligned_cols=122 Identities=19% Similarity=0.210 Sum_probs=93.4
Q ss_pred eeEEEEEEEeeeCCCC---CCccCCCCcccCcEEEEEE-C----CEEEeeecccCCCCCee-cceeEEEeeCCCc-EEEE
Q 046822 597 IGVLEMGILGATGLMP---MKFKEGKGGSVDAYCVAKY-G----QKWVRTRTVVDSLSPKW-NEQYTWEVFDPCT-VITV 666 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~---~~~~~~~g~s~dpy~~~~~-g----~~~~rT~~~~~~~nP~W-ne~~~~~v~~~~~-~l~i 666 (971)
...|.|+|++|++|+. .+..+..... ||||++.+ | ...+||+++.++.||.| ||.|.|++..|.- .|.|
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~-DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPP-DFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCC-CcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEE
Confidence 3579999999999842 1111112224 99999997 2 34589999999999999 9999999998764 8999
Q ss_pred EEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 667 GVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 667 ~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
.|+|+|..+ .|++||+..||++.|..|. +.++|.+...... ...+|.+.+.|.
T Consensus 509 ~V~D~d~~~---------~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l-~~atLfv~~~~~ 561 (567)
T PLN02228 509 KVQDYDNDT---------QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAY-KNTRLLVSFALD 561 (567)
T ss_pred EEEeCCCCC---------CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCC-CCeEEEEEEEEc
Confidence 999998554 8899999999999999887 6688876554322 236677777765
No 222
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.81 E-value=1.3e-08 Score=111.22 Aligned_cols=119 Identities=26% Similarity=0.443 Sum_probs=97.5
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeec-ceeEEEeeCCC---cEEEEEEEeCCC
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWN-EQYTWEVFDPC---TVITVGVFDNCS 673 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wn-e~~~~~v~~~~---~~l~i~V~D~~~ 673 (971)
|.|-|+|..|++||.||.. .-.+ |.||.+++++..++|.+..+++||.|| +-|.|+|.|.. .+|+|.+.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdka--sd~t-dafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKA--SDLT-DAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccc--cccc-hheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 7889999999999999752 2345 999999999999999999999999999 58999998643 389999999998
Q ss_pred CCccccCCCCCCCceeEEEEEEccccc----------CCceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 674 LDKNIINNSGGRDSRIGKVRIRLSTLE----------SDRVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 674 ~~~~~~~~~~~~d~~iG~~~i~l~~l~----------~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
.+ .+|-||++.|++..|. .|.....|+|+.+.-. |. +|+|.+-++.
T Consensus 80 ys---------andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih-gi--rgeinvivkv 135 (1169)
T KOG1031|consen 80 YS---------ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH-GI--RGEINVIVKV 135 (1169)
T ss_pred cc---------cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc-cc--cceeEEEEEE
Confidence 86 7899999999999873 2466789999875321 32 4888775554
No 223
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.80 E-value=2.4e-08 Score=115.00 Aligned_cols=120 Identities=21% Similarity=0.318 Sum_probs=92.7
Q ss_pred EEEEEEEeeeCCCCCCccCCC-CcccCcEEEEEEC-----CEEEeeecc-cCCCCCeecceeEEEeeCCCc-EEEEEEEe
Q 046822 599 VLEMGILGATGLMPMKFKEGK-GGSVDAYCVAKYG-----QKWVRTRTV-VDSLSPKWNEQYTWEVFDPCT-VITVGVFD 670 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~-g~s~dpy~~~~~g-----~~~~rT~~~-~~~~nP~Wne~~~~~v~~~~~-~l~i~V~D 670 (971)
.|.|+|++++|+++.-..... ..+ ||||.+++- ....+|+++ .++-||.|+|.|+|++..|.- .|.+.|+|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~-dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d 695 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEIS-DPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHD 695 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccC-CCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEe
Confidence 799999999987753222222 345 999999983 235899955 677899999999999999876 89999999
Q ss_pred CCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 671 NCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 671 ~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
+|..+ +|+|+|+..+|++.|..|. +..||.+..+... ..-+|.+.+.++
T Consensus 696 ~d~~~---------~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~-~~asLfv~i~~~ 744 (746)
T KOG0169|consen 696 YDYIG---------KDDFIGQTTLPVSELRQGY---RHVPLLSREGEAL-SSASLFVRIAIV 744 (746)
T ss_pred cCCCC---------cccccceeeccHHHhhCce---eeeeecCCCCccc-cceeEEEEEEEe
Confidence 99664 8999999999999999987 6688886543222 235666666654
No 224
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.76 E-value=3.4e-08 Score=113.74 Aligned_cols=118 Identities=23% Similarity=0.351 Sum_probs=93.2
Q ss_pred EEEEEEEEeeCCCCCCC----CCCCCcEEEEEEcC-----eEEEee-cccCCCCCeeeeeeEEecCCCCCCCcceEEEEE
Q 046822 7 KLVVEVIAAHNLMPKDG----EGSSSPFVEVEFEK-----QILRTQ-VKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNV 76 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~----~g~~dPyv~v~~~~-----~~~~T~-~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V 76 (971)
+|.|.|+.++++.+.-. +..+||||.|.+-| ..++|+ +..++-||.|+|+|+|.+..|+- ..|+|.|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL---AliRF~V 693 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL---ALIRFEV 693 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce---eEEEEEE
Confidence 79999999997765432 24689999999865 268899 66789999999999999998874 7899999
Q ss_pred EeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEee
Q 046822 77 FNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVS 133 (971)
Q Consensus 77 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 133 (971)
+|+|..+ +|+|+|+..+|+..|... . +-++|..+.+..-..-.|.+++.+.
T Consensus 694 ~d~d~~~-~ddF~GQ~tlP~~~L~~G----y-RhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 694 HDYDYIG-KDDFIGQTTLPVSELRQG----Y-RHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred EecCCCC-cccccceeeccHHHhhCc----e-eeeeecCCCCccccceeEEEEEEEe
Confidence 9999976 899999999999999641 1 3378887654444556666766654
No 225
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.76 E-value=3e-08 Score=86.88 Aligned_cols=86 Identities=23% Similarity=0.340 Sum_probs=70.8
Q ss_pred EEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCE-EEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCccc
Q 046822 600 LEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQK-WVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNI 678 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~-~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~~ 678 (971)
|.|+|..|+++....+--..++. ||||++++++. ++||++ +.||.|||.|.|+| +-...+.|.|||..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~-etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~------ 69 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRP-ETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKG------ 69 (109)
T ss_pred CEEEEEEEecCccccchhhccCC-CcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCC------
Confidence 57899999999876531135666 99999999876 899998 48999999999999 56779999999985
Q ss_pred cCCCCCCCceeEEEEEEccccc
Q 046822 679 INNSGGRDSRIGKVRIRLSTLE 700 (971)
Q Consensus 679 ~~~~~~~d~~iG~~~i~l~~l~ 700 (971)
++..-.||-.-+++++|.
T Consensus 70 ----~~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 70 ----GDQPVPVGLLWLRLSDIA 87 (109)
T ss_pred ----CCeecceeeehhhHHHHH
Confidence 235677999999999974
No 226
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.75 E-value=4.8e-08 Score=113.03 Aligned_cols=119 Identities=19% Similarity=0.319 Sum_probs=90.3
Q ss_pred CeEEEEEEEEeeCCCCC------CCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEE
Q 046822 5 KEKLVVEVIAAHNLMPK------DGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIE 73 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~ 73 (971)
..+|.|+|+.+++++.. +.....||||+|.+-+ .+++|++..++.||.|||+|.|.+.-++- ..|+
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPEL---AllR 544 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPEL---ALLR 544 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCce---eEEE
Confidence 35799999999987521 2233579999999964 35789999999999999999999887764 7899
Q ss_pred EEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 74 VNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 74 i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
|.|+|+|..+ +|+|+|+..+|+..|... -+..+|..+....-..-.|.+++.+
T Consensus 545 f~V~d~d~~~-~ddfiGQ~~lPv~~Lr~G-----yR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 545 VEVHEHDINE-KDDFGGQTCLPVSEIRQG-----IHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEEECCCCC-CCCEEEEEEcchHHhhCc-----cceEeccCCCcCCCCCCeeEEEEEe
Confidence 9999999865 799999999999999641 1347887664432223455555544
No 227
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.73 E-value=3.6e-08 Score=86.41 Aligned_cols=84 Identities=19% Similarity=0.264 Sum_probs=71.4
Q ss_pred EEEEEEEeeCCCCCC---CCCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCC
Q 046822 8 LVVEVIAAHNLMPKD---GEGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSS 83 (971)
Q Consensus 8 L~V~V~~a~~L~~~d---~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~ 83 (971)
|.|+|..|+|+...+ ..+.+||||.+++++. +.||++ +.||.|||+|.|.+.. . ..+++.|||...-
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk-~----nEiel~VyDk~~~- 71 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK-N----NEEEVIVYDKGGD- 71 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC-C----cEEEEEEEeCCCC-
Confidence 679999999998877 4778899999999986 889987 5899999999999953 3 7899999998652
Q ss_pred CCCceeEEEEEeCccccc
Q 046822 84 NSRNFLGKVRAPCSQLCK 101 (971)
Q Consensus 84 ~~d~~lG~~~i~l~~l~~ 101 (971)
..-.+|...+.++++..
T Consensus 72 -~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 72 -QPVPVGLLWLRLSDIAE 88 (109)
T ss_pred -eecceeeehhhHHHHHH
Confidence 46789999999998853
No 228
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.72 E-value=6.4e-08 Score=110.04 Aligned_cols=101 Identities=22% Similarity=0.361 Sum_probs=84.6
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-C----C-EEEeeecccCCCCCeec-ceeEEEeeCCCc-EEEEEEE
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-G----Q-KWVRTRTVVDSLSPKWN-EQYTWEVFDPCT-VITVGVF 669 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-g----~-~~~rT~~~~~~~nP~Wn-e~~~~~v~~~~~-~l~i~V~ 669 (971)
-.|.|.|++|+.|+. .|+|.. .|||.|++ | . +.++|.++.+++||+|| |.|+|+|++|.- .|.+.|+
T Consensus 1065 ~~lsv~vigaRHL~k----~gr~i~-cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~ 1139 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LGRSIA-CPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVY 1139 (1267)
T ss_pred eEEEEEEeecccccc----CCCCcc-CCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEe
Confidence 478899999999984 356666 79999997 3 3 34555556888999999 999999999876 8999999
Q ss_pred eCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecC
Q 046822 670 DNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLH 715 (971)
Q Consensus 670 D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~ 715 (971)
|+|.++ ...|||++..|+..|..|- +.+||++.-
T Consensus 1140 eeDmfs---------~~~FiaqA~yPv~~ik~Gf---RsVpLkN~y 1173 (1267)
T KOG1264|consen 1140 EEDMFS---------DPNFLAQATYPVKAIKSGF---RSVPLKNGY 1173 (1267)
T ss_pred cccccC---------Ccceeeeeecchhhhhccc---eeeecccCc
Confidence 999997 5569999999999999886 789998643
No 229
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.69 E-value=5.7e-09 Score=117.13 Aligned_cols=94 Identities=29% Similarity=0.513 Sum_probs=82.5
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCe-------EEEeecccCCCCCeeeeeeEEecCCCC-CCCcceEEEEE
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQ-------ILRTQVKYKDLNPIWNEKLVFDVPDIA-ELPYKHIEVNV 76 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~wne~f~f~v~~~~-~l~~~~L~i~V 76 (971)
...|.|.|+.|+++.+-|.+|.|||||+|.+... .++|+++.+|+||+|+|+|+|.|.... .-....|.|+|
T Consensus 946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTV 1025 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTV 1025 (1103)
T ss_pred ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEe
Confidence 3468899999999999999999999999999853 689999999999999999999997432 11256899999
Q ss_pred EeCCCCCCCCceeEEEEEeCccc
Q 046822 77 FNERRSSNSRNFLGKVRAPCSQL 99 (971)
Q Consensus 77 ~d~~~~~~~d~~lG~~~i~l~~l 99 (971)
+|+|-+. .+||-|++.+.|..+
T Consensus 1026 MDHD~L~-sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1026 MDHDYLR-SNDFAGEAFLELGDV 1047 (1103)
T ss_pred eccceec-ccccchHHHHhhCCC
Confidence 9999986 899999999999988
No 230
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.68 E-value=1.5e-07 Score=108.86 Aligned_cols=119 Identities=16% Similarity=0.202 Sum_probs=89.1
Q ss_pred CeEEEEEEEEeeCCC----CC--CCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEE
Q 046822 5 KEKLVVEVIAAHNLM----PK--DGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIE 73 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~----~~--d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~ 73 (971)
...|.|+|+.++++. .. +.....||||+|.+.+ .+++|+++.++.||.|||+|.|.+..++- ..|+
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeL---AllR 527 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPEL---ALLR 527 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCce---eEEE
Confidence 357999999998753 11 1234579999999963 36899999998999999999999887763 7899
Q ss_pred EEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 74 VNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 74 i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
|.|+|+|..+ .++|+|+..+|+..|... -+.++|..+....-..-.|.+.+.+
T Consensus 528 f~V~d~D~~~-~ddfigq~~lPv~~Lr~G-----yR~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 528 LEVHEYDMSE-KDDFGGQTCLPVWELSQG-----IRAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEEEECCCCC-CCcEEEEEEcchhhhhCc-----cceEEccCCCcCCCCCeeEEEEEEe
Confidence 9999998865 799999999999999642 1447887664332223455555543
No 231
>PLN02228 Phosphoinositide phospholipase C
Probab=98.65 E-value=2e-07 Score=107.47 Aligned_cols=120 Identities=15% Similarity=0.210 Sum_probs=92.4
Q ss_pred eEEEEEEEEeeCCCC---CC---CCCCCCcEEEEEEcC-----eEEEeecccCCCCCee-eeeeEEecCCCCCCCcceEE
Q 046822 6 EKLVVEVIAAHNLMP---KD---GEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIW-NEKLVFDVPDIAELPYKHIE 73 (971)
Q Consensus 6 ~~L~V~V~~a~~L~~---~d---~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~w-ne~f~f~v~~~~~l~~~~L~ 73 (971)
..|.|+|++|++|+. .+ .....||||+|.+.+ ..++|++..++.||.| ||+|.|.+..++- ..|+
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pEL---A~lR 507 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPEL---ALLW 507 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCce---eEEE
Confidence 479999999998731 11 123479999999864 3579999988899999 9999999887763 6899
Q ss_pred EEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 74 VNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 74 i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
|.|+|+|..+ .++|+|+..+|+..|.. + -+.++|.......-....|.+++.+.+
T Consensus 508 f~V~D~d~~~-~d~figq~~lPv~~Lr~-G----YR~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 508 FKVQDYDNDT-QNDFAGQTCLPLPELKS-G----VRAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EEEEeCCCCC-CCCEEEEEEcchhHhhC-C----eeEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 9999998766 79999999999999953 1 144788766543334567888877643
No 232
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.50 E-value=4.1e-07 Score=103.69 Aligned_cols=95 Identities=33% Similarity=0.469 Sum_probs=80.0
Q ss_pred CCCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC------eEEEeecccCCCCCeee-eeeEEecCCCCCCCcceEEE
Q 046822 2 GDGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK------QILRTQVKYKDLNPIWN-EKLVFDVPDIAELPYKHIEV 74 (971)
Q Consensus 2 ~~~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~wn-e~f~f~v~~~~~l~~~~L~i 74 (971)
|.....|.|.|+.||.|+.. +.|-+.|||.|.+-+ ..++|.+..+++||+|| |+|+|.+.+|+- ..|+|
T Consensus 1061 ~l~p~~lsv~vigaRHL~k~-gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~---A~lRF 1136 (1267)
T KOG1264|consen 1061 GLLPMTLSVKVLGARHLPKL-GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF---AFLRF 1136 (1267)
T ss_pred cccceEEEEEEeeccccccC-CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCce---EEEEE
Confidence 34567899999999999843 356677999999863 35666777899999999 999999999873 78999
Q ss_pred EEEeCCCCCCCCceeEEEEEeCccccc
Q 046822 75 NVFNERRSSNSRNFLGKVRAPCSQLCK 101 (971)
Q Consensus 75 ~V~d~~~~~~~d~~lG~~~i~l~~l~~ 101 (971)
.|||.|.++ ...|||++.+|+..+..
T Consensus 1137 ~V~eeDmfs-~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1137 VVYEEDMFS-DPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred EEecccccC-Ccceeeeeecchhhhhc
Confidence 999999998 56799999999999854
No 233
>PLN02352 phospholipase D epsilon
Probab=98.41 E-value=1.6e-06 Score=102.31 Aligned_cols=117 Identities=22% Similarity=0.311 Sum_probs=90.7
Q ss_pred eeEEEEEEEeeeCCCCC-C--ccCCCCcccCcEEEEEECCEE-EeeecccCCCCCeecceeEEEeeCCC-cEEEEEEEeC
Q 046822 597 IGVLEMGILGATGLMPM-K--FKEGKGGSVDAYCVAKYGQKW-VRTRTVVDSLSPKWNEQYTWEVFDPC-TVITVGVFDN 671 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~-~--~~~~~g~s~dpy~~~~~g~~~-~rT~~~~~~~nP~Wne~~~~~v~~~~-~~l~i~V~D~ 671 (971)
-|.|.++|++|+-+... . ..-+.|+ |||+.+.+++.+ .|| .+..||.|||.|.+++..+. +.++|+|.|.
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~--~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~ 83 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGK--ATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK 83 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCC--CceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecC
Confidence 48999999999843221 0 0012333 999999998765 588 55669999999999999988 6899999983
Q ss_pred CCCCccccCCCCCCCceeEEEEEEcccccCCce-EeeeEeceecCCCCcccceEEEEEEEEee
Q 046822 672 CSLDKNIINNSGGRDSRIGKVRIRLSTLESDRV-YTHSYPLLMLHPSGVKKMGELHLAVRFSC 733 (971)
Q Consensus 672 ~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~-~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 733 (971)
-.+||++.||+.+|..|.. .+.||++.+.+.+-.+. .+|++.++|+.
T Consensus 84 --------------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~ 131 (758)
T PLN02352 84 --------------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRP 131 (758)
T ss_pred --------------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEE
Confidence 3799999999999988855 89999999765433322 58999999984
No 234
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=98.40 E-value=1.9e-06 Score=99.08 Aligned_cols=158 Identities=17% Similarity=0.314 Sum_probs=108.0
Q ss_pred cccccCCchhHHHHHHHHHHHHHc--chhHHHHHHHHHHHHHhhhccc-cCCCCCCCCCcCCccCCCCCCCCCcccCCCC
Q 046822 788 SMRNWHKPIYSTLSLAFFFLLVLM--PELVIPAILLYLSLLGLWRYRS-RSRHPPHMDIRLSQADSVFPDELDEEFDSFP 864 (971)
Q Consensus 788 s~~~W~~p~~s~~~~~~~~~~~~~--~~l~~p~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~dee~d~~~ 864 (971)
++..||+|.+|+...+++..++|. ..+++|++++++.+.++|.-.. +.+.+ ++ .. .-..-|
T Consensus 508 ~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~--~~-------~v-------~V~~pP 571 (683)
T PF04842_consen 508 KLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRLGKS--FG-------EV-------TVRDPP 571 (683)
T ss_pred HHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc--cc-------eE-------EecCCC
Confidence 679999999998887777766663 2234799999888888874221 21111 00 00 001112
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhhhccccChhhHHHHHHHHHHHHhhhhhhhhhhhhhheeec-cc
Q 046822 865 TSRGADIVRIRYDRLRSVAGRIQTVVGDMATQGERFQALISWRDPRATFLFVIFCLFAAIGFYAVPVRVVFALSGVY-VL 943 (971)
Q Consensus 865 ~~~~~~~~~~r~~~~~~~~~~vQ~~~~~~a~~~Er~~~l~~W~~p~~t~~~~~~~~~~~~~~~~vp~r~i~l~~g~~-~~ 943 (971)
....-+.|- ++|+-...+.+.+..+=-.+=|+++++-|..|.+|-.++++++++++++.|+|+||++++.-+. +.
T Consensus 572 ~~nTvEqil----alQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FT 647 (683)
T PF04842_consen 572 PKNTVEQIL----ALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFT 647 (683)
T ss_pred CccHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222234443 4666667777778788888999999999999999999999999999999999999999998877 34
Q ss_pred cCCcccCCCCCh----hhhhhhcCCC
Q 046822 944 RPPRFRSKLPSP----ALSFFRRLPS 965 (971)
Q Consensus 944 r~p~~~~~~~~~----~~~~~~r~p~ 965 (971)
|+=.||+..-.. +-.++-++|.
T Consensus 648 re~~~Rr~s~er~~RRlrEWW~sIPA 673 (683)
T PF04842_consen 648 RESPFRRESSERFNRRLREWWDSIPA 673 (683)
T ss_pred ccCCCchhhHHHHHHHHHHHHhhCCc
Confidence 444466533222 4455556665
No 235
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=98.34 E-value=2.7e-06 Score=96.15 Aligned_cols=150 Identities=22% Similarity=0.318 Sum_probs=95.1
Q ss_pred cccccCCchhHHHHHHHHHHHHHcchhH---HHHHHHHHHHHHhhhccccCCCCCCCCCcCCccCCCCCCCCCcccCCCC
Q 046822 788 SMRNWHKPIYSTLSLAFFFLLVLMPELV---IPAILLYLSLLGLWRYRSRSRHPPHMDIRLSQADSVFPDELDEEFDSFP 864 (971)
Q Consensus 788 s~~~W~~p~~s~~~~~~~~~~~~~~~l~---~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dee~d~~~ 864 (971)
++++|++|..+..+.++|.++|++|.+. +|++++ ++.+++..|.++. |........ ...+.+.+.++.|
T Consensus 34 ~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~l-l~~il~~~yl~~~--p~~~~~~~~-----~~~~~~~~~~~~p 105 (359)
T PF06398_consen 34 RILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLL-LFGILLPSYLYRH--PSPTSSLPK-----SYEDHNPEPSEGP 105 (359)
T ss_pred HeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHeec--CCCcccccc-----cccccCCCcCCCC
Confidence 6799999999999999999988887765 343332 3334455555543 121111100 0011122222222
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhh----hccccChhhHHHHHHHHHHHHhhh----hhhhhhhhhh
Q 046822 865 TSRGADIVRIRYDRLRSVAGRIQTVVGDMATQGERFQA----LISWRDPRATFLFVIFCLFAAIGF----YAVPVRVVFA 936 (971)
Q Consensus 865 ~~~~~~~~~~r~~~~~~~~~~vQ~~~~~~a~~~Er~~~----l~~W~~p~~t~~~~~~~~~~~~~~----~~vp~r~i~l 936 (971)
+-.+. -..+......+||.|+.+.+....+.. +.+|+++..|.+++++|+++.+.+ ++||+|++++
T Consensus 106 tl~~~------s~e~~~nL~dlQn~m~~~~~~~d~~~~~~~~~~~f~~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll 179 (359)
T PF06398_consen 106 TLDKP------SREIVMNLRDLQNKMEDLSDPYDFLSSFLYPYLNFSDENLSSLIFLLLLLSPILLLLLSPFIPWRFVLL 179 (359)
T ss_pred Ccchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCccchHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 21111 112444556789999999999888875 457999999999888887777655 4689999999
Q ss_pred heeec-cccCCcccCC
Q 046822 937 LSGVY-VLRPPRFRSK 951 (971)
Q Consensus 937 ~~g~~-~~r~p~~~~~ 951 (971)
++|.. .+-||.+++.
T Consensus 180 ~~g~~~l~~Hp~~~~~ 195 (359)
T PF06398_consen 180 VSGAFVLLYHPPWRQA 195 (359)
T ss_pred HHHHHHhhcCCcHHHH
Confidence 99943 5888866643
No 236
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.27 E-value=5.4e-06 Score=93.38 Aligned_cols=178 Identities=16% Similarity=0.172 Sum_probs=122.4
Q ss_pred eeeeeeeecCC-CCccccEEEEeccCCCcceEEEEEecC-------CCCcccEEEEEEccccCCCCCCCCCCCCeEEEee
Q 046822 301 YRGITKRVSSN-HLQWDQVFAFSKDCIQSSAAEIFVKES-------DKDDFLGRIWFDLNEVPRRVPPDSQLAPQWYRME 372 (971)
Q Consensus 301 ~~~kT~~~~~~-nP~wne~f~f~~~~~~~~~l~v~v~D~-------~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 372 (971)
+..+|.++.+. ||.|-+.|.....-.....|++.++|. ...+|+|++...+..+.........+ .++
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l-----~~~ 115 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPL-----LLK 115 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhh-----hcc
Confidence 45689999999 999999988765544345677777765 46799999999999887643321111 122
Q ss_pred cCCCCccccEEEEEEEEEecccchHHHHHhhccccccCCCCccccccccccCCceEEEEEEEEEeecCCCCCCCCCCCCC
Q 046822 373 DRRGDRSKGGEVMVSIWFGTQADEAFAEAWHSKAANVHFDGLCSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAMMRF 452 (971)
Q Consensus 373 ~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~k~~~~p~l~~L~V~v~~a~~L~~~d~~~~~~~~ 452 (971)
. +.....|.|.+.+- .+.. ... ...-.++|++|.+.|.. ++
T Consensus 116 ~--~~~~~~g~iti~ae-----------e~~~--------------------~~~--~~~~~~~~~~ld~kd~f----~k 156 (529)
T KOG1327|consen 116 P--GKNAGSGTITISAE-----------EDES--------------------DND--VVQFSFRAKNLDPKDFF----SK 156 (529)
T ss_pred c--CccCCcccEEEEee-----------cccc--------------------cCc--eeeeeeeeeecCccccc----cc
Confidence 2 12223477766551 1100 000 11224568999999988 89
Q ss_pred CceEEEEEE--C----CeEEEeeecCCCCCCCCCCCcccceeEEEeecCC----CCeEEEEEEeCcCCCCCceeEEEEEe
Q 046822 453 PELHAKAQV--G----NQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPF----EDYLLISVEDHVGPGKDEIVGKVLIP 522 (971)
Q Consensus 453 ~dpyv~v~~--g----~~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~----~~~L~v~V~d~d~~~~d~~iG~~~i~ 522 (971)
+|||..++- + ...++|.+. +++++|.|.+. .+...... ...+.+.+||++..+++++||++..+
T Consensus 157 sd~~l~~~~~~~d~s~~~~~~tEv~-----~n~l~p~w~~~-~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt 230 (529)
T KOG1327|consen 157 SDPYLEFYKRVDDGSTQMLYRTEVV-----KNTLNPQWAPF-SISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTT 230 (529)
T ss_pred CCcceEEEEecCCCceeecccccee-----ccCCCCccccc-ccchhhhcccCCCCceEEEEeccCCCCCcCceeEeccc
Confidence 999998765 2 258899999 99999999884 33222211 34788999999988889999999999
Q ss_pred cccccc
Q 046822 523 VSAVER 528 (971)
Q Consensus 523 L~~l~~ 528 (971)
++++..
T Consensus 231 ~~~~~~ 236 (529)
T KOG1327|consen 231 LSELQE 236 (529)
T ss_pred HHHhcc
Confidence 998864
No 237
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.26 E-value=1.8e-06 Score=77.94 Aligned_cols=110 Identities=25% Similarity=0.336 Sum_probs=78.9
Q ss_pred EEEEEEeeeCCCCCCc-----------cCCCCcccCcEEEEEE----CCEEEeeecccCCCCCeecceeEEEee------
Q 046822 600 LEMGILGATGLMPMKF-----------KEGKGGSVDAYCVAKY----GQKWVRTRTVVDSLSPKWNEQYTWEVF------ 658 (971)
Q Consensus 600 L~v~v~~a~~L~~~~~-----------~~~~g~s~dpy~~~~~----g~~~~rT~~~~~~~nP~Wne~~~~~v~------ 658 (971)
|.|.|++|.||.++-. ...-|- ++||.+.+ +.+..+|+++.++..|.|+..++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGV--N~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~ 78 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGV--NSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRN 78 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceeccc--ceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcC
Confidence 4688899999875221 012333 89999996 467799999999999999999999875
Q ss_pred --CC--------CcEEEEEEEeCCCCCccc-cCCCCCCCceeEEEEEEcccccCC-ceEeeeEec
Q 046822 659 --DP--------CTVITVGVFDNCSLDKNI-INNSGGRDSRIGKVRIRLSTLESD-RVYTHSYPL 711 (971)
Q Consensus 659 --~~--------~~~l~i~V~D~~~~~~~~-~~~~~~~d~~iG~~~i~l~~l~~~-~~~~~~~~L 711 (971)
.. ...+.++||....-+... ......+|-+||.+.||+.+|... ...+.|||+
T Consensus 79 ~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 79 SGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 21 128999999987543100 011245788899999999998543 335889985
No 238
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=98.16 E-value=2.1e-05 Score=90.46 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHhhhccccChhhH--------HHHHHHHHHHHhhhhhhhhhhhhhheeeccccCCc---
Q 046822 879 LRSVAGRIQTVVGDMATQGERFQALISWRDPRAT--------FLFVIFCLFAAIGFYAVPVRVVFALSGVYVLRPPR--- 947 (971)
Q Consensus 879 ~~~~~~~vQ~~~~~~a~~~Er~~~l~~W~~p~~t--------~~~~~~~~~~~~~~~~vp~r~i~l~~g~~~~r~p~--- 947 (971)
+-.-+..++.++++|++.-||+-|.|+=+-||-. .+++-++++..++.-++=.+.+-+++|+-++-.|-
T Consensus 280 v~~~~~p~mh~l~di~Dt~ERfaNaLSPTpPFp~~~~RlRLa~~l~p~~l~Sl~~ssy~~~K~~tF~~Gf~FFGdPiI~r 359 (642)
T PF11696_consen 280 VWKKMRPIMHMLGDITDTWERFANALSPTPPFPRHTPRLRLAAILAPLLLASLFVSSYMFVKGTTFGFGFGFFGDPIITR 359 (642)
T ss_pred HHHhhhhHHHHHhhHHHHHHHHhhccCCCCCCCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhHHhhccHHHHH
Confidence 4556778999999999999999999988777632 23333333333333444466666778887766663
Q ss_pred ----ccCCCCCh------hhhhhhcCCCCccC
Q 046822 948 ----FRSKLPSP------ALSFFRRLPSKADT 969 (971)
Q Consensus 948 ----~~~~~~~~------~~~~~~r~p~~~~~ 969 (971)
+-.++|++ ---.|+.+|+++..
T Consensus 360 ~~~~Lnr~~P~W~k~leLrntlLkGVPTNAQL 391 (642)
T PF11696_consen 360 GIDYLNRKYPNWQKLLELRNTLLKGVPTNAQL 391 (642)
T ss_pred HHHHHhccCCCHHHHHHHHHHHhccCCchHHH
Confidence 33456664 22358889998753
No 239
>PLN02352 phospholipase D epsilon
Probab=98.05 E-value=2.3e-05 Score=92.87 Aligned_cols=119 Identities=13% Similarity=0.236 Sum_probs=89.1
Q ss_pred CeEEEEEEEEeeCCCCCC----C-CCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 5 KEKLVVEVIAAHNLMPKD----G-EGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d----~-~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
-|.|.++|.+|+-+...- . ....+|||.|.+++. ..|| .+..||.|||+|.+.+....+ ..+.|.|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~---~~~~f~vk~ 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLD---STITITLKT 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecC---CcEEEEEec
Confidence 378999999998443221 1 112399999999976 4788 556699999999999887542 579999988
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeee-EEEEEEEeeeccc
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRG-EISLKLFVSTTEE 137 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G-~i~l~~~~~~~~~ 137 (971)
...+||.+.||..++.. +......||++.....+. ..| .|++++.|.+-..
T Consensus 83 ------~~~~ig~~~~p~~~~~~-g~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 83 ------KCSILGRFHIQAHQIVT-EASFINGFFPLIMENGKP-NPELKLRFMLWFRPAEL 134 (758)
T ss_pred ------CCeEEEEEEEEHHHhhC-CCcccceEEEcccCCCCC-CCCCEEEEEEEEEEhhh
Confidence 26899999999999975 333356899998775543 344 8889999887543
No 240
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=98.02 E-value=0.00078 Score=73.67 Aligned_cols=127 Identities=19% Similarity=0.291 Sum_probs=98.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCC----CCCcceEEEEEEeCCCCC
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIA----ELPYKHIEVNVFNERRSS 83 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~----~l~~~~L~i~V~d~~~~~ 83 (971)
+.|.|++|+|.+... .-.-.+..+++++...|..+..+-.|.||..+.+++.... +.+...|++++|..+...
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 689999999998652 3455788899999999999999999999999999975432 456789999999998444
Q ss_pred CCCceeEEEEEeCccc---cccCCcccceEEEeEeCC-CCCeeeeEEEEEEEeeeccc
Q 046822 84 NSRNFLGKVRAPCSQL---CKNEGEATAQLYTLEKRS-LFSHIRGEISLKLFVSTTEE 137 (971)
Q Consensus 84 ~~d~~lG~~~i~l~~l---~~~~~~~~~~w~~L~~~~-~~~~~~G~i~l~~~~~~~~~ 137 (971)
...+.+|.+.++|..+ ...+......||+|..-+ ...+.+=+|.+.+.+.+...
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 4789999999999998 433334556899997652 22345678888888766554
No 241
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.01 E-value=4.7e-06 Score=99.08 Aligned_cols=110 Identities=24% Similarity=0.293 Sum_probs=89.5
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
.+++|.|-|.-|++|+--..+..+||||+..+.. .+++|++.++|.||.|||...+.--..+.++...|.++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 4689999999999996555466899999999974 26899999999999999999988443444556899999999
Q ss_pred CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeC
Q 046822 79 ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKR 116 (971)
Q Consensus 79 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~ 116 (971)
.+.+. .+.|||.+.|+|.++....+ ...||+|...
T Consensus 1602 ~~~~~-en~~lg~v~i~L~~~~l~kE--~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1602 NGGLL-ENVFLGGVNIPLLKVDLLKE--SVGWYNLGAC 1636 (1639)
T ss_pred cccee-eeeeeeeeecchhhcchhhh--hcceeecccc
Confidence 99876 78999999999999854322 2489999754
No 242
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.78 E-value=1.6e-05 Score=94.60 Aligned_cols=103 Identities=22% Similarity=0.248 Sum_probs=83.8
Q ss_pred eeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEEC-----CEEEeeecccCCCCCeecceeEEEe---eCCC-cEEEEE
Q 046822 597 IGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYG-----QKWVRTRTVVDSLSPKWNEQYTWEV---FDPC-TVITVG 667 (971)
Q Consensus 597 ~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g-----~~~~rT~~~~~~~nP~Wne~~~~~v---~~~~-~~l~i~ 667 (971)
.|.|.|.|.-|+||+-.. .|.-|||||+..+- ..+.||+++.+|.||.|||...+.- .... ..|++.
T Consensus 1523 ~~~LtImV~H~K~L~~Lq----dg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~s 1598 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQ----DGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVS 1598 (1639)
T ss_pred CceEEEEhhhhccccccc----CCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeee
Confidence 588999999999997553 34555999999982 2358999999999999999877652 2333 499999
Q ss_pred EEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEece
Q 046822 668 VFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLL 712 (971)
Q Consensus 668 V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 712 (971)
||.++.+. ...++|.+.|+|.++.-.+....||+|-
T Consensus 1599 Vls~~~~~---------en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1599 VLSNGGLL---------ENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred eeccccee---------eeeeeeeeecchhhcchhhhhcceeecc
Confidence 99998775 7899999999999987766667999985
No 243
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.75 E-value=3.5e-05 Score=69.83 Aligned_cols=105 Identities=20% Similarity=0.318 Sum_probs=77.9
Q ss_pred EEEEEEEeeCCCCCCC-------------CCCCCcEEEEEEc----CeEEEeecccCCCCCeeeeeeEEecCC-------
Q 046822 8 LVVEVIAAHNLMPKDG-------------EGSSSPFVEVEFE----KQILRTQVKYKDLNPIWNEKLVFDVPD------- 63 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~-------------~g~~dPyv~v~~~----~~~~~T~~~~~t~nP~wne~f~f~v~~------- 63 (971)
|.|.|++|.+|.+.-. .=..|+||.+.+. ++.++|+++-++..|.|+..++|.++-
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4688999999963210 1135899999853 468999999999999999999998751
Q ss_pred -----CCCCCcceEEEEEEeCCCCC---------CCCceeEEEEEeCccccccCCcccceEEEe
Q 046822 64 -----IAELPYKHIEVNVFNERRSS---------NSRNFLGKVRAPCSQLCKNEGEATAQLYTL 113 (971)
Q Consensus 64 -----~~~l~~~~L~i~V~d~~~~~---------~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L 113 (971)
.+.+....+.|+|||...-+ .+|-+||.+.||+.+|....... ..||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGi-tGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGI-TGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCc-cccccC
Confidence 11245678999999975422 24678999999999997654433 478875
No 244
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.68 E-value=0.0035 Score=68.67 Aligned_cols=245 Identities=16% Similarity=0.204 Sum_probs=148.5
Q ss_pred EEEEEEEeecCCCCCCCCeEEEEEECCeeeeeeeecCC-CCccccEEEEeccC-------CCcc--eEEEEEecC--CCC
Q 046822 274 LYVRVVKARDISLFGGGEIVAEVKLGNYRGITKRVSSN-HLQWDQVFAFSKDC-------IQSS--AAEIFVKES--DKD 341 (971)
Q Consensus 274 L~V~v~~a~~L~~~~~~dpyV~v~~~~~~~kT~~~~~~-nP~wne~f~f~~~~-------~~~~--~l~v~v~D~--~~d 341 (971)
+.|+|++|++++....-.-.+..+++|....|..+..+ +|.||..+.+.++. .+.. +|+++-.|. ...
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~r 81 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKR 81 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcc
Confidence 56899999999933455678889999999999999999 99999999998763 2333 455555663 788
Q ss_pred cccEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC-ccccEEEEEEEEEecccch---HHH-HHhhccccccC------
Q 046822 342 DFLGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGD-RSKGGEVMVSIWFGTQADE---AFA-EAWHSKAANVH------ 410 (971)
Q Consensus 342 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~i~l~~~~~~~~d~---~~~-~~~~~~~~~~~------ 410 (971)
+.||.+.+||.........+....+.||+|-+.+++ +...-+|.+.+.+-..... .+. ..+........
T Consensus 82 e~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 161 (340)
T PF12416_consen 82 ESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVPPPN 161 (340)
T ss_pred eeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCcccc
Confidence 999999999998822222233577899999876332 1134577777766432221 010 00000000000
Q ss_pred --------------CCCccccccccccCCceEEEEEEEEEeecCCCCCCCCCC--CCCCceEEEEEECCeEEEeeecCCC
Q 046822 411 --------------FDGLCSLKSKVYLSPKLWYLRVSVIEAQDIVPGDKGSAM--MRFPELHAKAQVGNQFLKTRIAAPS 474 (971)
Q Consensus 411 --------------~~~~~~~~~k~~~~p~l~~L~V~v~~a~~L~~~d~~~~~--~~~~dpyv~v~~g~~~~rT~~~~~~ 474 (971)
.++.-++.+.. ..-.+..|.|++-.|++|...-..... .+....|...++=+....|...
T Consensus 162 ~~~~~~~l~~~l~~~eg~lQIGp~~-~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F--- 237 (340)
T PF12416_consen 162 SLLSPATLIPVLLEDEGLLQIGPPD-LCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPF--- 237 (340)
T ss_pred cccCccceeEEEccCCceEeeCCch-hcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeec---
Confidence 00000111100 012355899999999998766211000 0235677777774445566666
Q ss_pred CCCCCCCCccc--ceeEEEeec---------CCCCeEEEEEEeCcCCCCCceeEEEEEeccccccc
Q 046822 475 ATRSLSNPCWN--EDLLFVVAE---------PFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERR 529 (971)
Q Consensus 475 ~~~~~~nP~w~--e~f~f~~~~---------~~~~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~ 529 (971)
....+|.|. +..-+.+.. .....|.|.++.. +..||.+.|++..+...
T Consensus 238 --~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g-----~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 238 --KSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG-----NQSLGSTSVPLQPLLPK 296 (340)
T ss_pred --cccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC-----CcEEEEEEEEhhhccCC
Confidence 556667553 333244431 1234677777764 56899999999988644
No 245
>PLN02964 phosphatidylserine decarboxylase
Probab=97.46 E-value=0.00018 Score=84.89 Aligned_cols=87 Identities=22% Similarity=0.422 Sum_probs=72.7
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEE-ECCEEEeeecccCCCCCeecceeEEEeeCCCc-EEEEEEEeCCC
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAK-YGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCT-VITVGVFDNCS 673 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~-~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~-~l~i~V~D~~~ 673 (971)
-.|...+++++|+ |+. . |+|+++- +|.+.+||.+.++|+||+||+...|.|..... ..+|.|||.+.
T Consensus 52 ~~~~~~~~~~~~~----~~~------~-~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (644)
T PLN02964 52 FSGIALLTLVGAE----MKF------K-DKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR 120 (644)
T ss_pred ccCeEEEEeehhh----hcc------C-CcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence 3588999999998 432 3 8888665 69999999999999999999999999885332 56999999998
Q ss_pred CCccccCCCCCCCceeEEEEEEcccccCC
Q 046822 674 LDKNIINNSGGRDSRIGKVRIRLSTLESD 702 (971)
Q Consensus 674 ~~~~~~~~~~~~d~~iG~~~i~l~~l~~~ 702 (971)
++ +++++|.|+++|.++...
T Consensus 121 ~s---------~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 121 LS---------KNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CC---------HHHhhhheeecHhhccHH
Confidence 86 899999999999887543
No 246
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.41 E-value=0.00022 Score=59.96 Aligned_cols=82 Identities=13% Similarity=0.213 Sum_probs=65.4
Q ss_pred EEEEEEeecCC----CCCCCCeEEEEEEC--C-eeeeeeeecCC-CCccccEEEEecc--CCCcceEEEEEecC-CCCcc
Q 046822 275 YVRVVKARDIS----LFGGGEIVAEVKLG--N-YRGITKRVSSN-HLQWDQVFAFSKD--CIQSSAAEIFVKES-DKDDF 343 (971)
Q Consensus 275 ~V~v~~a~~L~----~~~~~dpyV~v~~~--~-~~~kT~~~~~~-nP~wne~f~f~~~--~~~~~~l~v~v~D~-~~d~~ 343 (971)
.++|++++||. -+..+.-|++-.+. . -..||.+.+.. ||+|+|+|.|.+. .++...|.+.|+.. .+.+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~RKe~ 81 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTPRKRT 81 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCCccce
Confidence 47899999997 33355667764443 2 56788888888 9999999999876 55677899999998 78899
Q ss_pred cEEEEEEccccCC
Q 046822 344 LGRIWFDLNEVPR 356 (971)
Q Consensus 344 lG~~~i~l~~l~~ 356 (971)
||.|.++|+++-.
T Consensus 82 iG~~sL~l~s~ge 94 (103)
T cd08684 82 IGECSLSLRTLST 94 (103)
T ss_pred eeEEEeecccCCH
Confidence 9999999987753
No 247
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.24 E-value=0.00035 Score=58.75 Aligned_cols=87 Identities=13% Similarity=0.237 Sum_probs=66.3
Q ss_pred EEEEEEeeCCCCCCCCCCCCc--EEE--EEEc-CeEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCC
Q 046822 9 VVEVIAAHNLMPKDGEGSSSP--FVE--VEFE-KQILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSS 83 (971)
Q Consensus 9 ~V~V~~a~~L~~~d~~g~~dP--yv~--v~~~-~~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~ 83 (971)
-++|+.|+||.--..-| -+| |++ +.+. ....+|++++...||+|.|+|.|.+.. .++++-.|-|.|+.+-.
T Consensus 2 witv~~c~d~s~~~~~~-e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l-~qL~~V~L~fsv~~~~~-- 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCG-ENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKL-QNLQTVRLVFKIQTQTP-- 77 (103)
T ss_pred EEEEEEecccccccccC-cCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHH-hhccceEEEEEeeccCC--
Confidence 37899999996543222 344 443 2333 347899999999999999999999874 46777899999999433
Q ss_pred CCCceeEEEEEeCcccc
Q 046822 84 NSRNFLGKVRAPCSQLC 100 (971)
Q Consensus 84 ~~d~~lG~~~i~l~~l~ 100 (971)
+...||.|.+.++++-
T Consensus 78 -RKe~iG~~sL~l~s~g 93 (103)
T cd08684 78 -RKRTIGECSLSLRTLS 93 (103)
T ss_pred -ccceeeEEEeecccCC
Confidence 6799999999999984
No 248
>PLN02964 phosphatidylserine decarboxylase
Probab=97.13 E-value=0.00059 Score=80.71 Aligned_cols=86 Identities=19% Similarity=0.244 Sum_probs=73.3
Q ss_pred EEEEEEEEEeecCCCCCCCCCCCCCCceE-EEEEECCeEEEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEEEEe
Q 046822 428 WYLRVSVIEAQDIVPGDKGSAMMRFPELH-AKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVED 506 (971)
Q Consensus 428 ~~L~V~v~~a~~L~~~d~~~~~~~~~dpy-v~v~~g~~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d 506 (971)
+++.+++++|+ |+ ..|+| +.+++|.+++||.+. +++.||+||+...|.+.........+.|||
T Consensus 54 ~~~~~~~~~~~----~~-------~~~~~~~~~~~g~~~f~t~~~-----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 117 (644)
T PLN02964 54 GIALLTLVGAE----MK-------FKDKWLACVSFGEQTFRTETS-----DSTDKPVWNSEKKLLLEKNGPHLARISVFE 117 (644)
T ss_pred CeEEEEeehhh----hc-------cCCcEEEEEEecceeeeeccc-----cccCCcccchhhceEeccCCcceEEEEEEe
Confidence 47899999986 33 34776 556789999999999 999999999999998877666677999999
Q ss_pred CcCCCCCceeEEEEEeccccccc
Q 046822 507 HVGPGKDEIVGKVLIPVSAVERR 529 (971)
Q Consensus 507 ~d~~~~d~~iG~~~i~L~~l~~~ 529 (971)
++..+.++.+|.|+++|.++..+
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHH
Confidence 99999999999999999887655
No 249
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.97 E-value=0.00042 Score=74.51 Aligned_cols=126 Identities=16% Similarity=0.238 Sum_probs=93.6
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc-----CeEEEeecccCCCCCeeeeeeEEecCCCC--------CCCcce
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE-----KQILRTQVKYKDLNPIWNEKLVFDVPDIA--------ELPYKH 71 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~v~~~~--------~l~~~~ 71 (971)
...|.+.|+++++++...+-.-.|-||++.+. .++.+|.+++.|.+|.|+|.|.+.+.... .+....
T Consensus 366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 34566778888888765433345789998874 34678889999999999999999986521 133468
Q ss_pred EEEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 72 IEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 72 L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
+.|++|+...|.++|.|+|.+.+.|..|... .+.. ..|+|.++. ..+.|.|.+++.+..
T Consensus 446 ~kfeifhkggf~rSdkl~gt~nikle~Len~-cei~-e~~~l~DGR--K~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENM-CEIC-EYLPLKDGR--KAVGGKLEVKVRIRQ 504 (523)
T ss_pred eeEEEeeccccccccceeceeeeeehhhhcc-cchh-hceeccccc--cccCCeeEEEEEEec
Confidence 9999999999988999999999999888532 2222 347776542 357799999988754
No 250
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.00078 Score=72.04 Aligned_cols=108 Identities=20% Similarity=0.267 Sum_probs=86.5
Q ss_pred CceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-CCE----EEeeecccCCCCCeecceeEEEeeCCCcEEEEEEE
Q 046822 595 PHIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-GQK----WVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVF 669 (971)
Q Consensus 595 ~~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-g~~----~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~ 669 (971)
...|.|+|.|++|++|... -+.+..++|||+|.+ ++. ..+|+...++++|.+.++..|.-..+...|.++||
T Consensus 266 d~~g~l~vEii~ar~l~~k---~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~ 342 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVK---PGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVW 342 (405)
T ss_pred cccCceeEEEEeccccccc---CCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEe
Confidence 4579999999999999863 234444599999997 332 36888889999999999999988888889999999
Q ss_pred eCCCCCccccCCCCCCCceeEEEEEEcccccCCc-eEeeeEecee
Q 046822 670 DNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDR-VYTHSYPLLM 713 (971)
Q Consensus 670 D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~-~~~~~~~L~~ 713 (971)
-.- ++-..+.|+|.+.|-|.+|.... ....||+|..
T Consensus 343 gdy--------gRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 343 GDY--------GRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred ccc--------cccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 642 13458899999999999997655 6689999874
No 251
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.0012 Score=70.79 Aligned_cols=109 Identities=27% Similarity=0.399 Sum_probs=85.9
Q ss_pred CCCeEEEEEEEEeeCCCCCCCCC-CCCcEEEEEEcC-----eEEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEE
Q 046822 3 DGKEKLVVEVIAAHNLMPKDGEG-SSSPFVEVEFEK-----QILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNV 76 (971)
Q Consensus 3 ~~~~~L~V~V~~a~~L~~~d~~g-~~dPyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V 76 (971)
+..|.|.|.|+.|++|..+-..+ .++|||+|++.. .+.+|+...+|+.|.|.+...|.-..+. ..|.+.|
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~----k~Lq~tv 341 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPG----KYLQGTV 341 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCc----cEEEEEE
Confidence 35678999999999998876544 689999999874 2678999999999999998888866554 8999999
Q ss_pred Ee-CCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCC
Q 046822 77 FN-ERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRS 117 (971)
Q Consensus 77 ~d-~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~ 117 (971)
|. +.++- .+.|+|.+.+-+.++..... ....||+|-..+
T Consensus 342 ~gdygRmd-~k~fmg~aqi~l~eL~ls~~-~~igwyKlfgss 381 (405)
T KOG2060|consen 342 WGDYGRMD-HKSFMGVAQIMLDELNLSSS-PVIGWYKLFGSS 381 (405)
T ss_pred eccccccc-hHHHhhHHHHHhhhhccccc-cceeeeeccCCc
Confidence 95 44443 67899999999999865332 345899997653
No 252
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.50 E-value=0.0024 Score=68.93 Aligned_cols=119 Identities=21% Similarity=0.286 Sum_probs=91.6
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE---C--CEEEeeecccCCCCCeecceeEEEeeC-C--Cc-------
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY---G--QKWVRTRTVVDSLSPKWNEQYTWEVFD-P--CT------- 662 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~---g--~~~~rT~~~~~~~nP~Wne~~~~~v~~-~--~~------- 662 (971)
-.|++.|+++.+++... |.... |-|+.+++ + .+..+|.+++++.+|.|.|.|-+.+.. + +.
T Consensus 367 ~elel~ivrg~~~pvp~---gp~hl-d~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fk 442 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPG---GPMHL-DQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFK 442 (523)
T ss_pred hHhHHHHhhcccCCCCC---CchhH-HhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHH
Confidence 45778888999887532 11223 88998886 2 345788899999999999999999875 2 21
Q ss_pred --EEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcc-cceEEEEEEEEe
Q 046822 663 --VITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVK-KMGELHLAVRFS 732 (971)
Q Consensus 663 --~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~f~ 732 (971)
-+.|++|....|. .+|.++|.+.|.|..|++.......|+|++ |.| ..|.|++.++..
T Consensus 443 r~g~kfeifhkggf~--------rSdkl~gt~nikle~Len~cei~e~~~l~D----GRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 443 RLGKKFEIFHKGGFN--------RSDKLTGTGNIKLEILENMCEICEYLPLKD----GRKAVGGKLEVKVRIR 503 (523)
T ss_pred hcCeeEEEeeccccc--------cccceeceeeeeehhhhcccchhhceeccc----cccccCCeeEEEEEEe
Confidence 6899999987664 589999999999999998777777889875 322 258899988865
No 253
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.04 E-value=0.069 Score=51.43 Aligned_cols=130 Identities=17% Similarity=0.231 Sum_probs=91.6
Q ss_pred CCeEEEEEEEEeeCCCCCCCC--CCCCc--EEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCCC--C--------CCc
Q 046822 4 GKEKLVVEVIAAHNLMPKDGE--GSSSP--FVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDIA--E--------LPY 69 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~--g~~dP--yv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~--~--------l~~ 69 (971)
....|+++|..++-...--.. +..+. .+-+.+++|+++|+.+..+.+|.++|.|.|.+.... . -..
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 456789999999866532211 33333 455567799999999999999999999999986532 0 013
Q ss_pred ceEEEEEEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCC---eeeeEEEEEEEeeecc
Q 046822 70 KHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFS---HIRGEISLKLFVSTTE 136 (971)
Q Consensus 70 ~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~---~~~G~i~l~~~~~~~~ 136 (971)
+.|.+.|.--+..+ ...++|...++...+...+.... +++++-.+... -..|-|.+++.+.+..
T Consensus 87 ~pihivli~~d~~~-~~~Lv~s~~ldWR~vL~s~~~~~--~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 87 DPIHIVLIRTDPSG-ETTLVGSHFLDWRKVLCSGNGST--SFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred CceEEEEEEecCCC-ceEeeeeceehHHHHhccCCCcc--ceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 57888888877765 45899999999999876544221 45655543322 2679999999987644
No 254
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.46 E-value=0.076 Score=62.86 Aligned_cols=95 Identities=21% Similarity=0.316 Sum_probs=72.5
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEE-C------CEEEeeeccc-CCCCCeecc-eeEEEe-eCC-CcEE
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKY-G------QKWVRTRTVV-DSLSPKWNE-QYTWEV-FDP-CTVI 664 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~-g------~~~~rT~~~~-~~~nP~Wne-~~~~~v-~~~-~~~l 664 (971)
-.+.+.|+|++++=|...+ . ..||.|.+ | .+.+||+++. ++.||+|+| .|.|.- .-| -..|
T Consensus 701 IA~t~sV~VISgqFLSdrk-------v-gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~l 772 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRK-------V-GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASL 772 (1189)
T ss_pred EEeeEEEEEEeeeeccccc-------c-CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhhe
Confidence 3478999999999996532 3 57999996 4 2458999985 578999996 788853 333 3489
Q ss_pred EEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceEeeeEeceec
Q 046822 665 TVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLML 714 (971)
Q Consensus 665 ~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~ 714 (971)
+|.||++. ..+||.-.+|+..|..|. +..-|.+.
T Consensus 773 RiavyeEg-------------gK~ig~RIlpvd~l~~GY---rhv~LRse 806 (1189)
T KOG1265|consen 773 RIAVYEEG-------------GKFIGQRILPVDGLNAGY---RHVCLRSE 806 (1189)
T ss_pred eeeeeccC-------------CceeeeeccchhcccCcc---eeEEecCC
Confidence 99999974 579999999999999887 34555543
No 255
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.30 E-value=0.07 Score=63.16 Aligned_cols=88 Identities=26% Similarity=0.404 Sum_probs=68.3
Q ss_pred CCCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcC-------eEEEeeccc-CCCCCeeee-eeEEe-cCCCCCCCcce
Q 046822 2 GDGKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEK-------QILRTQVKY-KDLNPIWNE-KLVFD-VPDIAELPYKH 71 (971)
Q Consensus 2 ~~~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~~-~t~nP~wne-~f~f~-v~~~~~l~~~~ 71 (971)
|.-.+.+.|+|+++.=|..++ ..-||.|.+-+ ..+||++.. ++.||+|+| .|.|. |.-++. ..
T Consensus 699 gvIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL---A~ 771 (1189)
T KOG1265|consen 699 GVIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL---AS 771 (1189)
T ss_pred ceEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch---hh
Confidence 334578999999999887665 45899999853 357888876 899999995 58887 333443 68
Q ss_pred EEEEEEeCCCCCCCCceeEEEEEeCccccc
Q 046822 72 IEVNVFNERRSSNSRNFLGKVRAPCSQLCK 101 (971)
Q Consensus 72 L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~ 101 (971)
|+|.||+.+ .+|||+=.+|++.+..
T Consensus 772 lRiavyeEg-----gK~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 772 LRIAVYEEG-----GKFIGQRILPVDGLNA 796 (1189)
T ss_pred eeeeeeccC-----CceeeeeccchhcccC
Confidence 999999854 4799999999999853
No 256
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.78 E-value=0.15 Score=49.80 Aligned_cols=91 Identities=15% Similarity=0.121 Sum_probs=62.0
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc--Ce----EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE--KQ----ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~--~~----~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
+..++|+|+++.++...+ .++-||.+.+- ++ ...|+.+.. .++.|||...|.+.-.+--.+..|.|.||+
T Consensus 7 ~~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~ 82 (158)
T cd08398 7 NSNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICS 82 (158)
T ss_pred CCCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEE
Confidence 457899999999998643 46888888653 33 234544443 679999999998753332235799999999
Q ss_pred CCCCC---CCCceeEEEEEeCccc
Q 046822 79 ERRSS---NSRNFLGKVRAPCSQL 99 (971)
Q Consensus 79 ~~~~~---~~d~~lG~~~i~l~~l 99 (971)
...-. .....+|.+.++|=+.
T Consensus 83 ~~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 83 VKGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred EecccCCCCceEEEEEEEEEEECC
Confidence 76421 0124688888877663
No 257
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=94.61 E-value=0.32 Score=46.96 Aligned_cols=125 Identities=15% Similarity=0.200 Sum_probs=80.0
Q ss_pred eEEEEEEEeeeCCCCCCc-cCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCC--------------Cc
Q 046822 598 GVLEMGILGATGLMPMKF-KEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDP--------------CT 662 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~-~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~--------------~~ 662 (971)
..|+++|++++-...--. -++.-.+ --++-+.+++++++|+.+.-+.+|.|+|.|-|++... ++
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s-~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~ 87 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCS-TFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISD 87 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCce-EEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCC
Confidence 456777777765421000 0012222 2344455689999999999999999999999988632 34
Q ss_pred EEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCCceE--eeeEeceecCCCCcccceEEEEEEEEe
Q 046822 663 VITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESDRVY--THSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 663 ~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~~~~--~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
.|++.|.-.|..+ ...++|.-.+....+...... .....|.......+-..|.|++.+..-
T Consensus 88 pihivli~~d~~~---------~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELl 150 (156)
T PF15627_consen 88 PIHIVLIRTDPSG---------ETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELL 150 (156)
T ss_pred ceEEEEEEecCCC---------ceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEee
Confidence 7888888877543 448999999998886432211 233455543332222468888888754
No 258
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=94.42 E-value=0.074 Score=55.61 Aligned_cols=131 Identities=18% Similarity=0.264 Sum_probs=84.6
Q ss_pred ceeEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECC-EEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCC
Q 046822 596 HIGVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQ-KWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSL 674 (971)
Q Consensus 596 ~~g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~-~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~ 674 (971)
..|.|.++++.++||..... -+|.+.+-||++.++. ...||.+-.....-.|.|.|..++... .++.+-||.|+.-
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~--~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-~vl~~lvySW~pq 125 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQ--QKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-EVLHYLVYSWPPQ 125 (442)
T ss_pred ccceEEEEEecccccccChh--ccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-eeeeEEEeecCch
Confidence 45899999999999986543 2344448999999974 456777666666678999999888753 3688888888732
Q ss_pred CccccCCCCCCCc--eeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEeecchhHHHHhhcCCCCCCCc
Q 046822 675 DKNIINNSGGRDS--RIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSCANLVNMLHMYAMPLLPKMH 752 (971)
Q Consensus 675 ~~~~~~~~~~~d~--~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~~~~~~~~~~~p~~p~~~ 752 (971)
. ++. ..| .+.+..+.+.. -.+-+.|. ...+|++.+.+.|. ++.+.|-+..+|++.
T Consensus 126 ~---------RHKLC~~g--~l~~~~v~rqs-pd~~~Al~------lePrgq~~~r~~~~-----Dp~av~rR~~~Prlr 182 (442)
T KOG1452|consen 126 R---------RHKLCHLG--LLEAFVVDRQS-PDRVVALY------LEPRGQPPLRLPLA-----DPEAVTRRTVNPRLR 182 (442)
T ss_pred h---------hccccccc--hhhhhhhhhcC-Ccceeeee------cccCCCCceecccC-----ChHHHhhcccCcccc
Confidence 1 333 355 23333332211 12334443 13458899999764 566667777777754
No 259
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.08 E-value=0.26 Score=49.19 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=52.1
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--cCe----EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF--EKQ----ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
...++|+|+.+.+|..+ ....+-||.+.+ +++ ...|+.+.-..++.|||.+.|++.-.+--....|.|.||+
T Consensus 7 ~~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~ 84 (173)
T cd08693 7 EEKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYE 84 (173)
T ss_pred CCCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEE
Confidence 45789999999999862 234566777654 343 3456555555679999999998653322224799999999
Q ss_pred CCC
Q 046822 79 ERR 81 (971)
Q Consensus 79 ~~~ 81 (971)
...
T Consensus 85 ~~~ 87 (173)
T cd08693 85 VSK 87 (173)
T ss_pred ecc
Confidence 754
No 260
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.07 E-value=0.36 Score=47.22 Aligned_cols=84 Identities=23% Similarity=0.254 Sum_probs=59.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEE--CCeEE----EeeecCCCCCCCCCCCcccceeEEEee---cCCCCe
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQV--GNQFL----KTRIAAPSATRSLSNPCWNEDLLFVVA---EPFEDY 499 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~--g~~~~----rT~~~~~~~~~~~~nP~w~e~f~f~~~---~~~~~~ 499 (971)
.++|.|+++.++...+ .+|.||++.+ |++.. .|+.+ . ..++.|||-++|.+. -|.+..
T Consensus 9 ~~~v~i~~~~~~~~~~-------~~~l~V~v~l~~g~~~L~~pv~T~~v-----~-~~~~~WnEwL~fpI~i~dLPr~Ar 75 (158)
T cd08398 9 NLRIKILCATYVNVND-------IDKIYVRTGIYHGGEPLCDNVNTQRV-----P-CSNPRWNEWLDYDIYIPDLPRSAR 75 (158)
T ss_pred CeEEEEEeeccCCCCC-------cCeEEEEEEEEECCEEccCeeEeccc-----C-CCCCccceeEEcccchhcCChhhe
Confidence 4799999999986532 3588988865 66543 34433 2 357999999988763 345679
Q ss_pred EEEEEEeCcCCC----CCceeEEEEEeccc
Q 046822 500 LLISVEDHVGPG----KDEIVGKVLIPVSA 525 (971)
Q Consensus 500 L~v~V~d~d~~~----~d~~iG~~~i~L~~ 525 (971)
|.|.||+..... ....+|.+.++|=+
T Consensus 76 L~iti~~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 76 LCLSICSVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EEEEEEEEecccCCCCceEEEEEEEEEEEC
Confidence 999999965321 22469999988765
No 261
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=93.65 E-value=0.43 Score=47.61 Aligned_cols=86 Identities=20% Similarity=0.276 Sum_probs=59.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEE--CCeEE----EeeecCCCCCCCCCCCcccceeEEEee---cCCCCe
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQV--GNQFL----KTRIAAPSATRSLSNPCWNEDLLFVVA---EPFEDY 499 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~--g~~~~----rT~~~~~~~~~~~~nP~w~e~f~f~~~---~~~~~~ 499 (971)
.++|+|+.+.+|...+ ...+.||++.+ |++.. .|+.. .-..++.|||.+.|.+. -|.+..
T Consensus 9 ~f~i~i~~~~~~~~~~------~~~~l~V~~~lyhG~~~L~~p~~T~~~-----~~~~~~~Wnewl~F~I~i~dLPr~Ar 77 (173)
T cd08693 9 KFSITLHKISNLNAAE------RTMKVGVQAGLFHGGESLCKTVKTSEV-----SGKNDPVWNETLEFDINVCDLPRMAR 77 (173)
T ss_pred CEEEEEEEeccCccCC------CCceEEEEEEEEECCEEccCceEcccc-----CCCCccccceeEEcccchhcCChhHe
Confidence 4899999999997622 35688888755 76544 44444 33467999999988763 355678
Q ss_pred EEEEEEeCcCCC----------------CCceeEEEEEeccc
Q 046822 500 LLISVEDHVGPG----------------KDEIVGKVLIPVSA 525 (971)
Q Consensus 500 L~v~V~d~d~~~----------------~d~~iG~~~i~L~~ 525 (971)
|.|.||+..... .+..||.+.++|=+
T Consensus 78 Lciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 78 LCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred EEEEEEEecccccccccccccccccccCcceEEEEEeEEEEc
Confidence 999999864321 23578888777754
No 262
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.40 E-value=1.9 Score=41.52 Aligned_cols=114 Identities=21% Similarity=0.281 Sum_probs=75.0
Q ss_pred eEEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEE---Eeeecc-cCCCCCeecceeEEEee---CCC------cEE
Q 046822 598 GVLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKW---VRTRTV-VDSLSPKWNEQYTWEVF---DPC------TVI 664 (971)
Q Consensus 598 g~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~---~rT~~~-~~~~nP~Wne~~~~~v~---~~~------~~l 664 (971)
-.+.+.|++..+++.. .. -.||+.+.|+.. ..|... ..+..-.||+.|.+++. +.. ..+
T Consensus 7 f~~~l~i~~l~~~p~~-------~~-~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~ 78 (143)
T PF10358_consen 7 FQFDLTIHELENLPSS-------NG-KVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKEL 78 (143)
T ss_pred EEEEEEEEEeECcCCC-------CC-EEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEE
Confidence 3577889999998851 11 356666666553 444433 45567899999999875 221 178
Q ss_pred EEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccC--CceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 665 TVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLES--DRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 665 ~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
+|.|+....- ++...||++.|+|++... .......++|... .+....|++.+.+.
T Consensus 79 ~~~v~~~~~~---------~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~ 135 (143)
T PF10358_consen 79 KFSVFEVDGS---------GKKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLS 135 (143)
T ss_pred EEEEEEecCC---------CccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEE
Confidence 9999987421 133699999999999865 3455677887743 12346677777765
No 263
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=93.14 E-value=0.17 Score=53.03 Aligned_cols=118 Identities=15% Similarity=0.146 Sum_probs=79.1
Q ss_pred CCCeEEEEEEEEeeCCCCCCC--CCCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 3 DGKEKLVVEVIAAHNLMPKDG--EGSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 3 ~~~~~L~V~V~~a~~L~~~d~--~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
...|+|.+++.++++|.-... +-+-+-||++.++.+ +.||.+.....--.|.|+|..++.+. ..+.+-||.+
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-----~vl~~lvySW 122 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-----EVLHYLVYSW 122 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-----eeeeEEEeec
Confidence 457899999999999974432 446789999999976 67888888888889999999998754 5788888887
Q ss_pred CCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 80 RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
+.-. ++++.-.-.+.+..+...... .-+.|.- ..+|.+-+++.+.+
T Consensus 123 ~pq~-RHKLC~~g~l~~~~v~rqspd---~~~Al~l-----ePrgq~~~r~~~~D 168 (442)
T KOG1452|consen 123 PPQR-RHKLCHLGLLEAFVVDRQSPD---RVVALYL-----EPRGQPPLRLPLAD 168 (442)
T ss_pred Cchh-hccccccchhhhhhhhhcCCc---ceeeeec-----ccCCCCceecccCC
Confidence 7643 445433333444444322211 1133321 24577777776654
No 264
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.08 E-value=1.9 Score=41.56 Aligned_cols=122 Identities=20% Similarity=0.255 Sum_probs=78.1
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeE---EEeeccc-CCCCCeeeeeeEEecCC-----CCCCCcceEEEE
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQI---LRTQVKY-KDLNPIWNEKLVFDVPD-----IAELPYKHIEVN 75 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~---~~T~~~~-~t~nP~wne~f~f~v~~-----~~~l~~~~L~i~ 75 (971)
.-.+.|+|.+..+++. ....-||....++.. ..|.... .+-.-.|||.|.+.+.- ...++...+.|.
T Consensus 6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 3467899999999875 223445555555443 3444333 44457999999988532 123667899999
Q ss_pred EEeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 76 VFNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 76 V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
|+....-+ +...||.+.|+|+++..........-++|... ......|.+++.+..
T Consensus 82 v~~~~~~~-~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~---~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 82 VFEVDGSG-KKKVLGKVSINLAEYANEDEEPITVRLLLKKC---KKSNATLSISISLSE 136 (143)
T ss_pred EEEecCCC-ccceEEEEEEEHHHhhCcCCCcEEEEEeCccC---CCCCcEEEEEEEEEE
Confidence 99975433 23699999999999976542222233677654 133466677766654
No 265
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=92.35 E-value=0.83 Score=44.85 Aligned_cols=88 Identities=27% Similarity=0.318 Sum_probs=59.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEE--CCeEE----EeeecCCCCCCCCCCCcccceeEEEee---cCCCCe
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQV--GNQFL----KTRIAAPSATRSLSNPCWNEDLLFVVA---EPFEDY 499 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~--g~~~~----rT~~~~~~~~~~~~nP~w~e~f~f~~~---~~~~~~ 499 (971)
.++|.+....++...+. ...+.||++.+ |++.. .|... ....++.|||-+.|.+. -|.+..
T Consensus 9 ~~~i~i~~~~~~~~~~~-----~~~~l~V~~~l~~g~~~l~~~~~t~~~-----~~~~~~~Wne~l~F~i~~~~LP~~ar 78 (156)
T cd08380 9 NLRIKIHGITNINLLDS-----EDLKLYVRVQLYHGGEPLCPPQSTKKV-----PFSTSVTWNEWLTFDILISDLPREAR 78 (156)
T ss_pred CeEEEEEeeccccccCC-----CceeEEEEEEEEECCEEccCceeccCC-----cCCCCCcccceeEccchhhcCChhhe
Confidence 46788888877765221 35678888765 66422 33322 22367999999998753 355679
Q ss_pred EEEEEEeCcCCC--CCceeEEEEEecccc
Q 046822 500 LLISVEDHVGPG--KDEIVGKVLIPVSAV 526 (971)
Q Consensus 500 L~v~V~d~d~~~--~d~~iG~~~i~L~~l 526 (971)
|.|.||+.+... .+..||.+.++|=+.
T Consensus 79 L~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 79 LCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 999999976433 457899999988653
No 266
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=92.29 E-value=0.62 Score=45.75 Aligned_cols=94 Identities=17% Similarity=0.172 Sum_probs=62.3
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--cCe----EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEe
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF--EKQ----ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFN 78 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d 78 (971)
+..++|+|....++...+ ....+-||.+.+ +++ ...|.......++.|||...|.+.-.+--....|.|.||+
T Consensus 7 ~~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~ 85 (156)
T cd08380 7 NFNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYA 85 (156)
T ss_pred CCCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEE
Confidence 356888999988887522 234566777655 343 2344433334689999999998654322224799999999
Q ss_pred CCCCC-CCCceeEEEEEeCccc
Q 046822 79 ERRSS-NSRNFLGKVRAPCSQL 99 (971)
Q Consensus 79 ~~~~~-~~d~~lG~~~i~l~~l 99 (971)
.+..+ ..+..||.+.++|=+.
T Consensus 86 ~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 86 VSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EecCCCCcceEEEEEeEEeEcc
Confidence 77543 1357899999987764
No 267
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=91.84 E-value=0.97 Score=44.38 Aligned_cols=69 Identities=22% Similarity=0.308 Sum_probs=50.5
Q ss_pred cccCcEEEEEE--CCEE----EeeecccCCCCCeecceeEEEee--C-C-CcEEEEEEEeCCCCCccccCCCCCCCceeE
Q 046822 621 GSVDAYCVAKY--GQKW----VRTRTVVDSLSPKWNEQYTWEVF--D-P-CTVITVGVFDNCSLDKNIINNSGGRDSRIG 690 (971)
Q Consensus 621 ~s~dpy~~~~~--g~~~----~rT~~~~~~~nP~Wne~~~~~v~--~-~-~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG 690 (971)
.+ |-||.+.+ |++. .+|+.+.-+..+.|||...|+|. + | .+.|.|+|||.+.- ++...||
T Consensus 29 ~~-~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~---------~~~~~vg 98 (159)
T cd08397 29 NS-DLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT---------GKAVPFG 98 (159)
T ss_pred CC-CEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC---------CCceEEE
Confidence 45 78888865 6554 46666655667899999888876 3 2 34999999998632 2577899
Q ss_pred EEEEEcccc
Q 046822 691 KVRIRLSTL 699 (971)
Q Consensus 691 ~~~i~l~~l 699 (971)
.+.++|-+-
T Consensus 99 ~~~~~lFd~ 107 (159)
T cd08397 99 GTTLSLFNK 107 (159)
T ss_pred EEEEeeECC
Confidence 999998763
No 268
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=91.61 E-value=0.7 Score=45.39 Aligned_cols=70 Identities=24% Similarity=0.275 Sum_probs=50.9
Q ss_pred CCCceEEEEEE--CCeEE----EeeecCCCCCCCCCCCcccceeEEEee---cCCCCeEEEEEEeCcCCCCCceeEEEEE
Q 046822 451 RFPELHAKAQV--GNQFL----KTRIAAPSATRSLSNPCWNEDLLFVVA---EPFEDYLLISVEDHVGPGKDEIVGKVLI 521 (971)
Q Consensus 451 ~~~dpyv~v~~--g~~~~----rT~~~~~~~~~~~~nP~w~e~f~f~~~---~~~~~~L~v~V~d~d~~~~d~~iG~~~i 521 (971)
..+|.||++.+ |++.. .|+.+ .-+..+.|||-+.|.+. -|.+..|.|.||+.+..++...+|.+.+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~-----~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~ 102 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYK-----PFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTL 102 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEcccc-----CCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEE
Confidence 45788888866 65533 44444 44567889999998874 3456799999999865556778999999
Q ss_pred eccc
Q 046822 522 PVSA 525 (971)
Q Consensus 522 ~L~~ 525 (971)
+|=+
T Consensus 103 ~lFd 106 (159)
T cd08397 103 SLFN 106 (159)
T ss_pred eeEC
Confidence 8855
No 269
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=91.44 E-value=0.68 Score=46.20 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=64.2
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc--Ce----EEEeeccc----CCCCCeeeeeeEEecCCCCCCCcceEE
Q 046822 4 GKEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE--KQ----ILRTQVKY----KDLNPIWNEKLVFDVPDIAELPYKHIE 73 (971)
Q Consensus 4 ~~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~--~~----~~~T~~~~----~t~nP~wne~f~f~v~~~~~l~~~~L~ 73 (971)
-+..+.|+|.++.+++........|-||.+.+- ++ ...|+... -...+.|||...|.+.-.+--....|.
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 356789999999999987655567888888663 33 23444221 123577999999997432212247999
Q ss_pred EEEEeCCCCCC--------CCceeEEEEEeCccc
Q 046822 74 VNVFNERRSSN--------SRNFLGKVRAPCSQL 99 (971)
Q Consensus 74 i~V~d~~~~~~--------~d~~lG~~~i~l~~l 99 (971)
|.+|+...... .+..||.+.++|=+.
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 99999765321 246788888777663
No 270
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=89.97 E-value=1.3 Score=44.09 Aligned_cols=93 Identities=20% Similarity=0.303 Sum_probs=62.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEE--CCeEE----EeeecCCCCCCCCCCCcccceeEEEee---cCCCCe
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQV--GNQFL----KTRIAAPSATRSLSNPCWNEDLLFVVA---EPFEDY 499 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~--g~~~~----rT~~~~~~~~~~~~nP~w~e~f~f~~~---~~~~~~ 499 (971)
.++|+|..+.+++..... ...|.||++.+ |++.. .|+.... .+.-...+.|||-+.|.+. -|.+..
T Consensus 9 ~~~i~v~~~h~~~~~~~~----~~~~~~v~~~l~~g~~~L~~~~~T~~~~~-~~~f~~~~~Wnewl~F~i~i~~LPrear 83 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQ----SFEDFYLSCSLYHGGRLLCSPVTTKPVKI-TKSFFPRVVWDEWIEFPIPVCQLPRESR 83 (171)
T ss_pred cEEEEEEEeecCChHHhh----ccccEEEEEEEEECCEECcCceecccccc-ccCccccccccceEECccchhcCChhHE
Confidence 578999999999876654 46788988865 76544 3332200 0011235779999888763 355679
Q ss_pred EEEEEEeCcCCC---------CCceeEEEEEecccc
Q 046822 500 LLISVEDHVGPG---------KDEIVGKVLIPVSAV 526 (971)
Q Consensus 500 L~v~V~d~d~~~---------~d~~iG~~~i~L~~l 526 (971)
|.|.||+..... .+..||.+.++|=+.
T Consensus 84 L~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 84 LVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999999865433 356899998887653
No 271
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=89.54 E-value=2.7 Score=36.32 Aligned_cols=84 Identities=14% Similarity=0.176 Sum_probs=59.2
Q ss_pred CCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCCceeEEEEEeCccccccCC
Q 046822 26 SSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEG 104 (971)
Q Consensus 26 ~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~ 104 (971)
.++-.|++++++. ..+|.-+.. .+..|++.|.|++... ..|+|.||-.|- ..+.|-..+.|.+... +
T Consensus 8 ~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdRs-----RELEI~VywrD~----RslCav~~lrLEd~~~--~ 75 (98)
T cd08687 8 CSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELERS-----RELEIAVYWRDW----RSLCAVKFLKLEDERH--E 75 (98)
T ss_pred ccceEEEEEEcCeEEeecccccc-ccccccceeEEEeecc-----cEEEEEEEEecc----hhhhhheeeEhhhhcc--c
Confidence 3678899999974 677776654 5789999999998743 689999998765 3577777788887421 1
Q ss_pred cccceEEEeEeCCCCCeeeeEEEEEEEe
Q 046822 105 EATAQLYTLEKRSLFSHIRGEISLKLFV 132 (971)
Q Consensus 105 ~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (971)
. -.+|+ ++|.+...+.|
T Consensus 76 -~---~~~le-------pqg~l~~ev~f 92 (98)
T cd08687 76 -V---QLDME-------PQLCLVAELTF 92 (98)
T ss_pred -c---eeccc-------cccEEEEEEEe
Confidence 1 14444 35666666655
No 272
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=89.23 E-value=2.6 Score=42.11 Aligned_cols=69 Identities=19% Similarity=0.171 Sum_probs=45.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCCCCceEEEEEE--CCeEE---EeeecCCCCCCCCCCCcccceeEEEee---cCCCCeE
Q 046822 429 YLRVSVIEAQDIVPGDKGSAMMRFPELHAKAQV--GNQFL---KTRIAAPSATRSLSNPCWNEDLLFVVA---EPFEDYL 500 (971)
Q Consensus 429 ~L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~--g~~~~---rT~~~~~~~~~~~~nP~w~e~f~f~~~---~~~~~~L 500 (971)
.++|+|+.+..+ ..+.. .....||++.+ |++.. +|... .-+.++.|||-+.|.+. -|.+..|
T Consensus 11 ~friki~~~~~~-~~~~~----~~~~l~V~~~Ly~g~~~l~~~~T~~~-----~~~~~~~WnEwL~f~I~~~dLP~~arL 80 (178)
T cd08399 11 KFRVKILGIDIP-VLPRN----TDLTVFVEANIQHGQQVLCQRRTSPK-----PFTEEVLWNTWLEFDIKIKDLPKGALL 80 (178)
T ss_pred CEEEEEEeeccc-CcCCC----CceEEEEEEEEEECCeecccceeecc-----CCCCCccccccEECccccccCChhhEE
Confidence 478888887633 33322 33457777644 66533 45544 44567999999888763 3456689
Q ss_pred EEEEEeC
Q 046822 501 LISVEDH 507 (971)
Q Consensus 501 ~v~V~d~ 507 (971)
.|.||+.
T Consensus 81 c~ti~~~ 87 (178)
T cd08399 81 NLQIYCG 87 (178)
T ss_pred EEEEEEE
Confidence 9999986
No 273
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=87.72 E-value=3.1 Score=41.57 Aligned_cols=124 Identities=16% Similarity=0.113 Sum_probs=67.5
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--cCe---EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeC
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEF--EKQ---ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNE 79 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~--~~~---~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~ 79 (971)
+..++|+|.++.++... ......-||.+.+ +++ ..+|+.+.-+.++.|||...|++.-.+--....|.|.||+.
T Consensus 9 ~~~friki~~~~~~~~~-~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 9 DRKFRVKILGIDIPVLP-RNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred CCCEEEEEEeecccCcC-CCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEE
Confidence 34688899998754432 1222334555543 333 23666666677899999999997644322357999999997
Q ss_pred CCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCC-eeeeEEEEEEEee
Q 046822 80 RRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFS-HIRGEISLKLFVS 133 (971)
Q Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~~ 133 (971)
....++....|... .+.. .+......|..+.--+.++ -.+|...+.++-.
T Consensus 88 ~~~~~~~~~~~~~~--~~~~--~~~~~~l~wvn~~LFD~~~~Lr~G~~~L~~W~~ 138 (178)
T cd08399 88 KAPALSSKKSAESP--SSES--KGKHQLLYYVNLLLIDHRFLLRTGEYVLHMWQI 138 (178)
T ss_pred ecCccccccccccc--cccc--ccccceEEEEEEEEEcCCCceecCCEEEEEecC
Confidence 54221112222210 0110 0112223455543322222 2469988888764
No 274
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=86.75 E-value=0.08 Score=52.82 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=19.6
Q ss_pred HHHHHHHHh----cHHHHHhhhccccChhhHHHHHHHHHHHHhhhhhhhhhhhhhheeeccccCCcccCC
Q 046822 886 IQTVVGDMA----TQGERFQALISWRDPRATFLFVIFCLFAAIGFYAVPVRVVFALSGVYVLRPPRFRSK 951 (971)
Q Consensus 886 vQ~~~~~~a----~~~Er~~~l~~W~~p~~t~~~~~~~~~~~~~~~~vp~r~i~l~~g~~~~r~p~~~~~ 951 (971)
++...+.++ .....++.++.|+||..|..++++|++.+.+.-++++..++.+.-+-.+--|++-++
T Consensus 82 ~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~ 151 (169)
T PF02453_consen 82 VERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEK 151 (169)
T ss_dssp HHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG--------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHH
Confidence 444444444 447888899999999999999999999999999888887776655554444544443
No 275
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=85.02 E-value=8 Score=33.58 Aligned_cols=82 Identities=13% Similarity=0.106 Sum_probs=55.2
Q ss_pred CcEEEEEECCEE-EeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcccccCC
Q 046822 624 DAYCVAKYGQKW-VRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLESD 702 (971)
Q Consensus 624 dpy~~~~~g~~~-~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~~~ 702 (971)
+..|+++++|+. .+|.... ..+..|++.|++++.. +..|+|.||=.| -..+=|-.-+.|.+...
T Consensus 10 eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD------------~RslCav~~lrLEd~~~- 74 (98)
T cd08687 10 EVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-SRELEIAVYWRD------------WRSLCAVKFLKLEDERH- 74 (98)
T ss_pred ceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-ccEEEEEEEEec------------chhhhhheeeEhhhhcc-
Confidence 889999998764 5666543 3578899999998753 458999999766 22445566667776322
Q ss_pred ceEeeeEeceecCCCCcccceEEEEEEEE
Q 046822 703 RVYTHSYPLLMLHPSGVKKMGELHLAVRF 731 (971)
Q Consensus 703 ~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 731 (971)
....+|. +.|.+..+++|
T Consensus 75 ---~~~~~le--------pqg~l~~ev~f 92 (98)
T cd08687 75 ---EVQLDME--------PQLCLVAELTF 92 (98)
T ss_pred ---cceeccc--------cccEEEEEEEe
Confidence 1223332 34888888877
No 276
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=83.30 E-value=6.4 Score=39.58 Aligned_cols=57 Identities=19% Similarity=0.378 Sum_probs=41.1
Q ss_pred EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCC-CceeEEEEEeC
Q 046822 39 ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNS-RNFLGKVRAPC 96 (971)
Q Consensus 39 ~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~-d~~lG~~~i~l 96 (971)
..+|.+.+.+.+|.|+|++.+.+.. +......|.|..++...-... ...+|-+.+||
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~-~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPI-DKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecCh-hhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 5789999999999999999999873 456678999999885542111 14455555554
No 277
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=82.23 E-value=5 Score=38.62 Aligned_cols=75 Identities=20% Similarity=0.225 Sum_probs=48.8
Q ss_pred EEeecccCC-CCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCC----ceeEEEEEeCccccccCCcccceEEEeE
Q 046822 40 LRTQVKYKD-LNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSR----NFLGKVRAPCSQLCKNEGEATAQLYTLE 114 (971)
Q Consensus 40 ~~T~~~~~t-~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d----~~lG~~~i~l~~l~~~~~~~~~~w~~L~ 114 (971)
..|+...-+ .++.|||...|.+.-.+--.+..|.|.||..+... .. ..||.+.++|=+.. +.
T Consensus 22 ~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~-~~~~~~~~lgw~n~~lFd~~---~~--------- 88 (142)
T PF00792_consen 22 QSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK-KSKKKKVPLGWVNLPLFDYR---GQ--------- 88 (142)
T ss_dssp EE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST-TT--EEEEEEEEEEESB-TT---SB---------
T ss_pred eeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC-ccccceeEEEEEEEEeECCC---Cc---------
Confidence 366666655 79999999999964322222479999999987754 23 68999999987752 11
Q ss_pred eCCCCCeeeeEEEEEEEee
Q 046822 115 KRSLFSHIRGEISLKLFVS 133 (971)
Q Consensus 115 ~~~~~~~~~G~i~l~~~~~ 133 (971)
-.+|...+.++-.
T Consensus 89 ------L~~G~~~L~lW~~ 101 (142)
T PF00792_consen 89 ------LRQGPQKLSLWPD 101 (142)
T ss_dssp ------BEEEEEEEE-EET
T ss_pred ------ccCCCEEEEEEcC
Confidence 1358888888543
No 278
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=82.13 E-value=9.1 Score=38.60 Aligned_cols=57 Identities=12% Similarity=0.243 Sum_probs=41.8
Q ss_pred EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCC---ceeEEEEEeC
Q 046822 39 ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSR---NFLGKVRAPC 96 (971)
Q Consensus 39 ~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d---~~lG~~~i~l 96 (971)
..+|.+.+...+|.|+|++.+.+. .+......|.|.+++...-..+| ..+|-+.+||
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP-~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIP-IEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecC-hhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 678888889999999999999987 34566789999999865321122 3455555555
No 279
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=81.93 E-value=7 Score=35.08 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=50.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--cCe----EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 7 KLVVEVIAAHNLMPKDGEGSSSPFVEVEF--EKQ----ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 7 ~L~V~V~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
.+.+.+...++.........++-||.+.+ +++ ...|+.+.-...+.|||...|.+.-.+--.+..|.|.+|+..
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 12 NLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 36677788877766543333578888865 343 335655555666899999999865333223579999999865
Q ss_pred C
Q 046822 81 R 81 (971)
Q Consensus 81 ~ 81 (971)
.
T Consensus 92 ~ 92 (100)
T smart00142 92 N 92 (100)
T ss_pred C
Confidence 3
No 280
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=81.50 E-value=11 Score=36.31 Aligned_cols=54 Identities=26% Similarity=0.345 Sum_probs=38.0
Q ss_pred eeecccCC-CCCeecceeEEEee--C-C-CcEEEEEEEeCCCCCccccCCCCCCC----ceeEEEEEEcccc
Q 046822 637 RTRTVVDS-LSPKWNEQYTWEVF--D-P-CTVITVGVFDNCSLDKNIINNSGGRD----SRIGKVRIRLSTL 699 (971)
Q Consensus 637 rT~~~~~~-~nP~Wne~~~~~v~--~-~-~~~l~i~V~D~~~~~~~~~~~~~~~d----~~iG~~~i~l~~l 699 (971)
.|..+.-+ .++.|||.+.|++. + | .+.|.|+||+.+... .. ..||.+.++|-+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~---------~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK---------KSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST---------TT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC---------ccccceeEEEEEEEEeECC
Confidence 56655555 79999998888875 3 3 348999999876432 22 6899999998775
No 281
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=81.12 E-value=8.6 Score=34.47 Aligned_cols=70 Identities=23% Similarity=0.306 Sum_probs=45.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCCceEEEEEE--CCeEE----EeeecCCCCCCCCCCCcccceeEEEee---cCCCCeE
Q 046822 430 LRVSVIEAQDIVPGDKGSAMMRFPELHAKAQV--GNQFL----KTRIAAPSATRSLSNPCWNEDLLFVVA---EPFEDYL 500 (971)
Q Consensus 430 L~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~--g~~~~----rT~~~~~~~~~~~~nP~w~e~f~f~~~---~~~~~~L 500 (971)
+.+.+..+++....... ..++.||++.+ |++.. .|+.+ .-...+.|||-+.|.+. -|.+..|
T Consensus 13 ~~~~~~~~~~~~l~~~~----~~~~l~v~~~l~~g~~~l~~pv~t~~~-----~~~~~~~Wnewl~f~i~i~~LPr~a~L 83 (100)
T smart00142 13 LVITIALIHGIPLNWSR----DYSDLYVEIQLYHGGKLLCLPVSTSYK-----PFFPSVKWNEWLTFPIQISDLPREARL 83 (100)
T ss_pred eEEEEEEeeCCCccccc----CcceEEEEEEEEECCEEccCcEEeccc-----CCCCCcccceeEEccCchhcCChhhEE
Confidence 45566666666544433 34588988865 66543 34433 33446899999888763 3456789
Q ss_pred EEEEEeCc
Q 046822 501 LISVEDHV 508 (971)
Q Consensus 501 ~v~V~d~d 508 (971)
.+.+|+..
T Consensus 84 ~~~i~~~~ 91 (100)
T smart00142 84 CITIYEVK 91 (100)
T ss_pred EEEEEEee
Confidence 99999864
No 282
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=79.23 E-value=6 Score=40.00 Aligned_cols=59 Identities=17% Similarity=0.344 Sum_probs=34.6
Q ss_pred EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCC--ceeEEEEEeCcc
Q 046822 39 ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSR--NFLGKVRAPCSQ 98 (971)
Q Consensus 39 ~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d--~~lG~~~i~l~~ 98 (971)
...|.+...+.+|.|+|+|.+.+.. .......|.|.++|...-..++ ..+|-+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~-~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPP-DLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-C-CCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCc-hhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 4677888888999999999999874 3345689999999976532122 578887777766
No 283
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=79.14 E-value=16 Score=36.79 Aligned_cols=38 Identities=8% Similarity=0.092 Sum_probs=31.1
Q ss_pred eeeeeeeecCC-CCccccEEEEecc--CCCcceEEEEEecC
Q 046822 301 YRGITKRVSSN-HLQWDQVFAFSKD--CIQSSAAEIFVKES 338 (971)
Q Consensus 301 ~~~kT~~~~~~-nP~wne~f~f~~~--~~~~~~l~v~v~D~ 338 (971)
..++|-+...+ +|.|+|++.+.+. ......|.+..+..
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~ 93 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHC 93 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEe
Confidence 36789999999 9999999988877 33567888888876
No 284
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=79.01 E-value=32 Score=34.13 Aligned_cols=89 Identities=15% Similarity=0.199 Sum_probs=59.1
Q ss_pred CCceEEEEEECC-eEEEeeecCCCCCCCCCCCcccceeEEEeecCCCCeEEEEEEeCcCCCCCceeEEEEEecccccccc
Q 046822 452 FPELHAKAQVGN-QFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFEDYLLISVEDHVGPGKDEIVGKVLIPVSAVERRT 530 (971)
Q Consensus 452 ~~dpyv~v~~g~-~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~ 530 (971)
....|+++.+++ ++.+|+.... .....-.|++.|.+.+.. .-+.|.++||.... ..+..|+.+.+++-......
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l---~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~ 110 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPL---WSDFRVHFNEIFNVQITR-WPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHT 110 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEec---CCCeEEeccCEEEEEEec-CCCEEEEEEEEccC-ccceEEEEEEeeCCCCcccc
Confidence 456799999966 6777776622 233345678889888866 45589999999865 78889999999976543321
Q ss_pred ccccccceeEEcccC
Q 046822 531 DDKQVVSRWFNLENH 545 (971)
Q Consensus 531 ~~~~~~~~w~~L~~~ 545 (971)
........||.+...
T Consensus 111 ~~~~~~~~~~eFsS~ 125 (168)
T PF15625_consen 111 STDNVPLEEYEFSSD 125 (168)
T ss_pred cccCCceEeEEEcCC
Confidence 111113456665443
No 285
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=77.40 E-value=22 Score=41.14 Aligned_cols=110 Identities=14% Similarity=0.250 Sum_probs=78.7
Q ss_pred eeEEEEEEEEeecCC-CCCCCCeEEEEEECCeeeeeeeecCCCCccccEEEEeccCCCcceEEEEEecC------CCCcc
Q 046822 271 MQYLYVRVVKARDIS-LFGGGEIVAEVKLGNYRGITKRVSSNHLQWDQVFAFSKDCIQSSAAEIFVKES------DKDDF 343 (971)
Q Consensus 271 ~~~L~V~v~~a~~L~-~~~~~dpyV~v~~~~~~~kT~~~~~~nP~wne~f~f~~~~~~~~~l~v~v~D~------~~d~~ 343 (971)
..-+.|.|.+..+|. ....-=.||...+.|.+.+|.....+.|.|...=.|....+. ..+.|.++.. ..|.-
T Consensus 340 a~smevvvmevqglksvapnrivyctmevegeklqtdqaeaskp~wgtqgdfstthpl-pvvkvklftestgvlaledke 418 (1218)
T KOG3543|consen 340 ALSMEVVVMEVQGLKSVAPNRIVYCTMEVEGEKLQTDQAEASKPKWGTQGDFSTTHPL-PVVKVKLFTESTGVLALEDKE 418 (1218)
T ss_pred EeeeeEEEeeeccccccCCCeeEEEEEEecccccccchhhhcCCCCCcCCCcccCCCC-ceeEEEEEeecceeEEeechh
Confidence 356788899999997 334445789999999999998877669999998888877764 6778888775 35667
Q ss_pred cEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCccccEEEEEEE
Q 046822 344 LGRIWFDLNEVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSI 388 (971)
Q Consensus 344 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~ 388 (971)
+|.+.+ ...++++-.+.|+.+.-++......-.|.+++
T Consensus 419 lgrvil-------~ptpns~ks~ewh~mtvpknsqdqdlkiklav 456 (1218)
T KOG3543|consen 419 LGRVIL-------QPTPNSAKSPEWHTMTVPKNSQDQDLKIKLAV 456 (1218)
T ss_pred hCeEEE-------ecCCCCcCCccceeeecCCCCcCccceEEEEE
Confidence 777765 33345566679999987765432223455544
No 286
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=76.98 E-value=2.9 Score=50.82 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=79.7
Q ss_pred CcccCcEEEEEECCEE-EeeecccCC-CCCeecceeEEEeeCCCcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEcc
Q 046822 620 GGSVDAYCVAKYGQKW-VRTRTVVDS-LSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLS 697 (971)
Q Consensus 620 g~s~dpy~~~~~g~~~-~rT~~~~~~-~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~ 697 (971)
..+ ++|+.+.+.... .+|..+++. .+|.|.+.|..........+++.|-+.+..+ ...++|.+.++..
T Consensus 136 ~~~-e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G---------~s~~w~~v~~s~~ 205 (887)
T KOG1329|consen 136 KTL-ENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG---------WSKRWGRVKISFL 205 (887)
T ss_pred hhc-cchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc---------ceeEEEEeccchh
Confidence 346 999999997554 678888887 6899999998888888889999999988654 5689999999999
Q ss_pred cccCCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 698 TLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 698 ~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
.+..+.....|+++...+..-.++.-.+.+.+.|.
T Consensus 206 ~~~~~~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~ 240 (887)
T KOG1329|consen 206 QYCSGHRIGGWFPILDNDGKPHQKGSNESLRLGFT 240 (887)
T ss_pred hhhccccccceeeeeccCCccccCCcccceEEeeE
Confidence 99988878899998876553333322344545554
No 287
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=76.85 E-value=38 Score=33.59 Aligned_cols=105 Identities=14% Similarity=0.254 Sum_probs=70.5
Q ss_pred CCCcEEEEEEcCe-EEEeecccC--CCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCCceeEEEEEeCcccccc
Q 046822 26 SSSPFVEVEFEKQ-ILRTQVKYK--DLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKN 102 (971)
Q Consensus 26 ~~dPyv~v~~~~~-~~~T~~~~~--t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~ 102 (971)
...-|+++.++++ ..+|+...- +..-.+||.|.+.+...- ..|.++||..... .+.+|+++.+|+-.....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P----esi~l~i~E~~~~--~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWP----ESIKLEIYEKSGL--SDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCC----CEEEEEEEEccCc--cceEEEEEEeeCCCCccc
Confidence 4467999999976 467766543 333567899999987644 6999999998873 689999999998776332
Q ss_pred CC--cccceEEEeEeCC-------------------CCCeeeeEEEEEEEeeecc
Q 046822 103 EG--EATAQLYTLEKRS-------------------LFSHIRGEISLKLFVSTTE 136 (971)
Q Consensus 103 ~~--~~~~~w~~L~~~~-------------------~~~~~~G~i~l~~~~~~~~ 136 (971)
.. .....|+.+.... ......|.|.+++.|....
T Consensus 110 ~~~~~~~~~~~eFsS~~~~~~~~~~vg~~~~~~~~~~~~~tsG~l~~~~sW~~~~ 164 (168)
T PF15625_consen 110 TSTDNVPLEEYEFSSDQPVHPDHEGVGSFEADGSNSTSLFTSGSLSYSVSWAVGE 164 (168)
T ss_pred ccccCCceEeEEEcCCceeeccceeccccccCCCCcccceeeeEEEEecEEeCCC
Confidence 11 1133556554321 0113468888888886543
No 288
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=76.17 E-value=24 Score=35.63 Aligned_cols=38 Identities=13% Similarity=0.042 Sum_probs=31.5
Q ss_pred eeeeeeeecCC-CCccccEEEEecc--CCCcceEEEEEecC
Q 046822 301 YRGITKRVSSN-HLQWDQVFAFSKD--CIQSSAAEIFVKES 338 (971)
Q Consensus 301 ~~~kT~~~~~~-nP~wne~f~f~~~--~~~~~~l~v~v~D~ 338 (971)
..++|-+...+ +|.|+|++.+.+. ......|.+.++..
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~ 93 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHR 93 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEee
Confidence 57888998998 9999999988776 34567899998876
No 289
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=75.78 E-value=4.7 Score=47.69 Aligned_cols=75 Identities=32% Similarity=0.393 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhhhccccChhhHHHHHHHHHHHHhhhhhhhhhhhhhheeeccccCCcc
Q 046822 869 ADIVRIRYDRLRSVAGRIQTVVGDMATQGERFQALISWRDPRATFLFVIFCLFAAIGFYAVPVRVVFALSGVYVLRPPRF 948 (971)
Q Consensus 869 ~~~~~~r~~~~~~~~~~vQ~~~~~~a~~~Er~~~l~~W~~p~~t~~~~~~~~~~~~~~~~vp~r~i~l~~g~~~~r~p~~ 948 (971)
++.||..++|+=. .++=-++.+.-.|.-|-+|++|+-|+.||++-++|.++=+++|.-+++|+.-| .+|+.
T Consensus 90 pdkLRa~lERlY~------tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~dll~p~~~~~L~~li---~~P~~ 160 (642)
T PF11696_consen 90 PDKLRANLERLYM------TVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLLDLLVPAFFAFLIALI---LSPPA 160 (642)
T ss_pred hHHHHHHhHhhee------ehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCccc
Confidence 6777777666532 22233455667788899999999999999999999999999998877776544 35666
Q ss_pred cCCC
Q 046822 949 RSKL 952 (971)
Q Consensus 949 ~~~~ 952 (971)
|.-+
T Consensus 161 r~~l 164 (642)
T PF11696_consen 161 RSIL 164 (642)
T ss_pred cccc
Confidence 6543
No 290
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=74.43 E-value=7.4 Score=37.77 Aligned_cols=33 Identities=18% Similarity=0.481 Sum_probs=24.1
Q ss_pred cccccCCchhHHHHHHHHHHHHHcchhHHHHHHH
Q 046822 788 SMRNWHKPIYSTLSLAFFFLLVLMPELVIPAILL 821 (971)
Q Consensus 788 s~~~W~~p~~s~~~~~~~~~~~~~~~l~~p~~~l 821 (971)
++++|+.|..|.++.+++++++.. -+++|+-.+
T Consensus 87 allsWrdP~aT~lf~~~clv~avv-ly~vP~r~l 119 (156)
T PF08372_consen 87 ALLSWRDPRATALFVVFCLVAAVV-LYFVPFRVL 119 (156)
T ss_pred HhhccCCccHHHHHHHHHHHHHHH-HHHhhHHHH
Confidence 779999999999998888776654 223555433
No 291
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=72.06 E-value=32 Score=39.91 Aligned_cols=118 Identities=19% Similarity=0.286 Sum_probs=80.4
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCeecceeEEEeeCCCcEEEEEEEeCCCCCccc
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPKWNEQYTWEVFDPCTVITVGVFDNCSLDKNI 678 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~Wne~~~~~v~~~~~~l~i~V~D~~~~~~~~ 678 (971)
.++|.|.+.+||..... +- -.||.+.+.+.+.+|.... ...|.|..+-.|...+|..++++.+|.+..--
T Consensus 342 smevvvmevqglksvap-----nr-ivyctmevegeklqtdqae-askp~wgtqgdfstthplpvvkvklftestgv--- 411 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAP-----NR-IVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHPLPVVKVKLFTESTGV--- 411 (1218)
T ss_pred eeeEEEeeeccccccCC-----Ce-eEEEEEEecccccccchhh-hcCCCCCcCCCcccCCCCceeEEEEEeeccee---
Confidence 47788999999976421 22 4799999988888887643 34699999999999999999999999876311
Q ss_pred cCCCCCCCceeEEEEEEcccccCCceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 679 INNSGGRDSRIGKVRIRLSTLESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 679 ~~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
-+-.|.-||++.+.-..-... ...|+.....+... ...=+|.|+++..
T Consensus 412 ---laledkelgrvil~ptpns~k--s~ewh~mtvpknsq-dqdlkiklavrmd 459 (1218)
T KOG3543|consen 412 ---LALEDKELGRVILQPTPNSAK--SPEWHTMTVPKNSQ-DQDLKIKLAVRMD 459 (1218)
T ss_pred ---EEeechhhCeEEEecCCCCcC--CccceeeecCCCCc-CccceEEEEEecc
Confidence 123678899998754332221 24677665433321 1235678888765
No 292
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=70.58 E-value=18 Score=36.43 Aligned_cols=59 Identities=8% Similarity=0.110 Sum_probs=34.5
Q ss_pred EEEeeecccCCCCCeecceeEEEeeCC---CcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEccc
Q 046822 634 KWVRTRTVVDSLSPKWNEQYTWEVFDP---CTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLST 698 (971)
Q Consensus 634 ~~~rT~~~~~~~nP~Wne~~~~~v~~~---~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~ 698 (971)
..+.|.+.+++.+|.|+|.|-+.+... ...|.+++++-..-. +..++..+|-+.+||.+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~------~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKE------SKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SS------SS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeecccc------ccCccceeEEEEEEeee
Confidence 347888889999999999999988743 348999999876321 11122789999999987
No 293
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=70.47 E-value=4.8 Score=45.55 Aligned_cols=43 Identities=19% Similarity=0.496 Sum_probs=30.8
Q ss_pred HHHHHhcHH---HHHhhhccccChhhHHHHHHHHHHHHhhhhhhhh
Q 046822 889 VVGDMATQG---ERFQALISWRDPRATFLFVIFCLFAAIGFYAVPV 931 (971)
Q Consensus 889 ~~~~~a~~~---Er~~~l~~W~~p~~t~~~~~~~~~~~~~~~~vp~ 931 (971)
.|+.+-.+. +++..+++|++|..|..++++++..++..|+..+
T Consensus 18 ~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~ 63 (359)
T PF06398_consen 18 RLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLL 63 (359)
T ss_pred HHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 345555555 7888999999998887777777766666665444
No 294
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=69.35 E-value=13 Score=33.86 Aligned_cols=99 Identities=17% Similarity=0.141 Sum_probs=51.6
Q ss_pred EEEEEEcC-eEEEeecccCCCCCeeeeeeEEecCCCC----CCCcceEEEEEEeCCCCCCCCceeEEEEEeCccccccCC
Q 046822 30 FVEVEFEK-QILRTQVKYKDLNPIWNEKLVFDVPDIA----ELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEG 104 (971)
Q Consensus 30 yv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~v~~~~----~l~~~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~ 104 (971)
||.+.+.. +.+.|.+.. ..+|.+|-+-.|.|...+ -++...+.++++..- +.....+|.+.+++..+....+
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~--g~d~~tla~~~i~l~~ll~~~~ 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL--GSDFETLAAGQISLRPLLESNG 78 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE---SS-EEEEEEEEE--SHHHH--S
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec--cCCeEEEEEEEeechhhhcCCC
Confidence 67777765 567777776 789999988888876433 245678999998755 3246899999999999975444
Q ss_pred cccceEEEeEeCCCCCeeeeEEEEEEEee
Q 046822 105 EATAQLYTLEKRSLFSHIRGEISLKLFVS 133 (971)
Q Consensus 105 ~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 133 (971)
.....-..|...+. ..-|.|.+.+.+.
T Consensus 79 ~~i~~~~~l~g~~~--~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 79 ERIHGSATLVGVSG--EDFGTLEYWIRLR 105 (107)
T ss_dssp --EEEEEEE-BSSS---TSEEEEEEEEEE
T ss_pred ceEEEEEEEeccCC--CeEEEEEEEEEec
Confidence 22223345544332 3668888777653
No 295
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=66.59 E-value=35 Score=31.05 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=48.0
Q ss_pred EEEEEEC-CEEEeeecccCCCCCeecceeEEEeeCC--------CcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEc
Q 046822 626 YCVAKYG-QKWVRTRTVVDSLSPKWNEQYTWEVFDP--------CTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRL 696 (971)
Q Consensus 626 y~~~~~g-~~~~rT~~~~~~~nP~Wne~~~~~v~~~--------~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l 696 (971)
||.+.+- -+...|.++. +.+|.+|-+-.|.|.-. ...+.|+++..- + .....||.++|++
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~--g--------~d~~tla~~~i~l 70 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL--G--------SDFETLAAGQISL 70 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE---S--------S-EEEEEEEEE--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec--c--------CCeEEEEEEEeec
Confidence 5666653 3445555555 88999998777777522 237999998753 2 2578899999999
Q ss_pred ccccC--CceEeeeEeceecCCCCcccceEEEEEEEEe
Q 046822 697 STLES--DRVYTHSYPLLMLHPSGVKKMGELHLAVRFS 732 (971)
Q Consensus 697 ~~l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 732 (971)
..+.. +........|..... . ..|.|+..++..
T Consensus 71 ~~ll~~~~~~i~~~~~l~g~~~--~-~~g~l~y~~rl~ 105 (107)
T PF11618_consen 71 RPLLESNGERIHGSATLVGVSG--E-DFGTLEYWIRLR 105 (107)
T ss_dssp SHHHH--S--EEEEEEE-BSSS----TSEEEEEEEEEE
T ss_pred hhhhcCCCceEEEEEEEeccCC--C-eEEEEEEEEEec
Confidence 99742 223445555553332 2 469999888865
No 296
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=63.92 E-value=61 Score=35.15 Aligned_cols=107 Identities=19% Similarity=0.227 Sum_probs=74.7
Q ss_pred eEEEEEEEEeecCCCCCCCCeEEEEEECCeeeeeeeecCC--CC-ccccEEEEeccCCCcceEEEEEecC--CCCcccEE
Q 046822 272 QYLYVRVVKARDISLFGGGEIVAEVKLGNYRGITKRVSSN--HL-QWDQVFAFSKDCIQSSAAEIFVKES--DKDDFLGR 346 (971)
Q Consensus 272 ~~L~V~v~~a~~L~~~~~~dpyV~v~~~~~~~kT~~~~~~--nP-~wne~f~f~~~~~~~~~l~v~v~D~--~~d~~lG~ 346 (971)
.+|-|.|.+..++. ....-|+++..|....+|..+.-+ +- .-.+.....+... +..|.|.++-. .+...||.
T Consensus 58 F~LLVeI~EI~~i~--k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQc-DnTLkI~lfKKkLvkk~hIgd 134 (508)
T PTZ00447 58 FYLLVKINEIFNIN--KYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQC-DETLRVDLFTTKLTKKVHIGQ 134 (508)
T ss_pred eeEEEEehhhhccc--cceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeec-CceEEEEEEeccccceeEEEE
Confidence 67888888888876 567889999999999988666544 32 2233333333332 46899999987 78899999
Q ss_pred EEEEcc-ccCCCCCCCCCCCCeEEEeecCCCCccccEEEEEEE
Q 046822 347 IWFDLN-EVPRRVPPDSQLAPQWYRMEDRRGDRSKGGEVMVSI 388 (971)
Q Consensus 347 ~~i~l~-~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~ 388 (971)
+.|++. ++....- ...+||.+. ..|. ..++|.|++
T Consensus 135 I~InIn~dIIdk~F----PKnkWy~c~-kDGq--~~cRIqLSF 170 (508)
T PTZ00447 135 IKIDINASVISKSF----PKNEWFVCF-KDGQ--EICKVQMSF 170 (508)
T ss_pred EEecccHHHHhccC----CccceEEEe-cCCc--eeeeEEEEe
Confidence 999986 3333221 134999994 3343 468888887
No 297
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=62.55 E-value=16 Score=30.53 Aligned_cols=44 Identities=7% Similarity=0.055 Sum_probs=32.0
Q ss_pred eCccccc-cCCcccceEEEeEeCCC-CCeeeeEEEEEEEeeecccc
Q 046822 95 PCSQLCK-NEGEATAQLYTLEKRSL-FSHIRGEISLKLFVSTTEEV 138 (971)
Q Consensus 95 ~l~~l~~-~~~~~~~~w~~L~~~~~-~~~~~G~i~l~~~~~~~~~~ 138 (971)
++..++. +++....+|..|..+.. .+..+|+|.+++.....++.
T Consensus 2 DlgtVY~qP~H~~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~GD~ 47 (72)
T PF08151_consen 2 DLGTVYNQPDHQFYRKWALLTDPDDTSAGVKGYLKVDISVLGPGDE 47 (72)
T ss_pred ceeeeecCCCCeeEeceEEecCCCCCccCCceEEEEEEEEEcCCCc
Confidence 3445543 34566789999988743 44689999999999988763
No 298
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=58.44 E-value=1.2e+02 Score=30.00 Aligned_cols=83 Identities=16% Similarity=0.100 Sum_probs=55.2
Q ss_pred EEEEEEeecCCCCCCCCCCCCCCceEEEEEE--C--------Ce-EEEeeecCCCCCCCCCCCcccceeEEEeecCCC--
Q 046822 431 RVSVIEAQDIVPGDKGSAMMRFPELHAKAQV--G--------NQ-FLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFE-- 497 (971)
Q Consensus 431 ~V~v~~a~~L~~~d~~~~~~~~~dpyv~v~~--g--------~~-~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~-- 497 (971)
.=.|..|.+. ...+.||+..+ | .. ...|.+.......++..-.||--|++.+.....
T Consensus 5 ~G~I~~a~~f----------~~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~g 74 (168)
T PF07162_consen 5 IGEIESAEGF----------EEDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQG 74 (168)
T ss_pred EEEEEEEECC----------CCCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCC
Confidence 3456778765 34578999776 2 23 567766622110124456799888776654332
Q ss_pred -CeEEEEEEeCcCCCCCceeEEEEEec
Q 046822 498 -DYLLISVEDHVGPGKDEIVGKVLIPV 523 (971)
Q Consensus 498 -~~L~v~V~d~d~~~~d~~iG~~~i~L 523 (971)
..|.|+||..|..+++.+.|...+.|
T Consensus 75 wP~L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 75 WPQLVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred CceEEEEEEEEcccCCeEEeEEeEEEe
Confidence 48999999999999999988776665
No 299
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=55.10 E-value=30 Score=31.68 Aligned_cols=62 Identities=24% Similarity=0.300 Sum_probs=42.4
Q ss_pred EEEEEEEeCCCCCccccCCCCCCCceeEEEEEEccccc--------------CCceEeeeEeceecCCCCcccceEEEEE
Q 046822 663 VITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLSTLE--------------SDRVYTHSYPLLMLHPSGVKKMGELHLA 728 (971)
Q Consensus 663 ~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~l~--------------~~~~~~~~~~L~~~~~~g~~~~G~i~l~ 728 (971)
.|++.+++-..- .......+||.+.|++.++. ........|+|.+.. |. ..|+|.+.
T Consensus 30 pl~i~~~~~~~~------~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~--~~-~~G~I~l~ 100 (112)
T PF14924_consen 30 PLYIVVKKVPPG------FPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDEN--GN-PVGEISLY 100 (112)
T ss_pred ceEEEEEecCCC------CCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCC--Cc-eeeeEEEE
Confidence 677877765421 01246688999999999853 122446779998543 33 56999999
Q ss_pred EEEee
Q 046822 729 VRFSC 733 (971)
Q Consensus 729 ~~f~~ 733 (971)
+|.+|
T Consensus 101 iRLsc 105 (112)
T PF14924_consen 101 IRLSC 105 (112)
T ss_pred EEEec
Confidence 99985
No 300
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=54.77 E-value=96 Score=31.06 Aligned_cols=58 Identities=19% Similarity=0.350 Sum_probs=37.5
Q ss_pred EEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCC----CCCceeEEEEEeCcc
Q 046822 40 LRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSS----NSRNFLGKVRAPCSQ 98 (971)
Q Consensus 40 ~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~----~~d~~lG~~~i~l~~ 98 (971)
.-|.+.....+|.|+|+|.+.+.. .......|.|.+||...-. .....+|-+.+||-+
T Consensus 54 ~~~sv~~~~k~p~f~deiKi~LP~-~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYHKNPVFNDEIKIQLPA-DLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcCCCCCCceeEEEecCC-ccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 334444444899999999999853 2225689999999976421 124556666555544
No 301
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=51.45 E-value=12 Score=44.55 Aligned_cols=61 Identities=21% Similarity=0.360 Sum_probs=44.9
Q ss_pred HHHHHHHHhcHHHHHhhhccccChhhHHHHHHHHHHHH---hhhhhhhhhhhhhheeeccccCC
Q 046822 886 IQTVVGDMATQGERFQALISWRDPRATFLFVIFCLFAA---IGFYAVPVRVVFALSGVYVLRPP 946 (971)
Q Consensus 886 vQ~~~~~~a~~~Er~~~l~~W~~p~~t~~~~~~~~~~~---~~~~~vp~r~i~l~~g~~~~r~p 946 (971)
.+..|-=+...+.+++.+..|.+|..|..|+++++.+. .+-|++|.-.++++.+.-++|+-
T Consensus 492 ~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~ 555 (683)
T PF04842_consen 492 MKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQ 555 (683)
T ss_pred HHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445556778899999999999999998887766554 37788887777766555555553
No 302
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=49.52 E-value=58 Score=32.80 Aligned_cols=41 Identities=12% Similarity=0.223 Sum_probs=33.4
Q ss_pred EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCC
Q 046822 39 ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNER 80 (971)
Q Consensus 39 ~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~ 80 (971)
...|.+...+.+|.|+|++.+.+.-. ......|.|+.||..
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~-l~~~hHLlFtFyHvs 97 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQ-LHEKHHLLFTFYHVS 97 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCc-CCCCeeEEEEEEeec
Confidence 57788888999999999999987642 234579999999976
No 303
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=49.28 E-value=26 Score=29.23 Aligned_cols=46 Identities=28% Similarity=0.367 Sum_probs=33.6
Q ss_pred EccccCCCCCCCCCCCCeEEEeecCCCCc-cccEEEEEEEEEecccchH
Q 046822 350 DLNEVPRRVPPDSQLAPQWYRMEDRRGDR-SKGGEVMVSIWFGTQADEA 397 (971)
Q Consensus 350 ~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~~~~~d~~ 397 (971)
|+..+.. .+++.+..+|..|.++.... ..+|+|.+++.+..+.|+.
T Consensus 2 DlgtVY~--qP~H~~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~GD~~ 48 (72)
T PF08151_consen 2 DLGTVYN--QPDHQFYRKWALLTDPDDTSAGVKGYLKVDISVLGPGDEP 48 (72)
T ss_pred ceeeeec--CCCCeeEeceEEecCCCCCccCCceEEEEEEEEEcCCCcC
Confidence 3444443 34688889999999986432 3789999999987776664
No 304
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.59 E-value=52 Score=29.93 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 046822 869 ADIVRIRYDRLRSVAGRI 886 (971)
Q Consensus 869 ~~~~~~r~~~~~~~~~~v 886 (971)
-+.|..|..+|++++..+
T Consensus 38 ~e~L~~kV~aLKsLs~dI 55 (118)
T KOG3385|consen 38 AESLQQKVKALKSLSLDI 55 (118)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 477888888888777653
No 305
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=48.11 E-value=2.1e+02 Score=31.17 Aligned_cols=108 Identities=9% Similarity=0.136 Sum_probs=71.2
Q ss_pred EEEEEEEeeeCCCCCCccCCCCcccCcEEEEEECCEEEeeecccCCCCCe--ecceeEEEeeCCCcEEEEEEEeCCCCCc
Q 046822 599 VLEMGILGATGLMPMKFKEGKGGSVDAYCVAKYGQKWVRTRTVVDSLSPK--WNEQYTWEVFDPCTVITVGVFDNCSLDK 676 (971)
Q Consensus 599 ~L~v~v~~a~~L~~~~~~~~~g~s~dpy~~~~~g~~~~rT~~~~~~~nP~--Wne~~~~~v~~~~~~l~i~V~D~~~~~~ 676 (971)
.|-|.|..-.++.. .. .-|+.++.|...++|..+.-+..=. -.+.....+.--...|+|.+|-....
T Consensus 59 ~LLVeI~EI~~i~k--------~k-hiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv-- 127 (508)
T PTZ00447 59 YLLVKINEIFNINK--------YK-HIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT-- 127 (508)
T ss_pred eEEEEehhhhcccc--------ce-eEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc--
Confidence 45667766666642 22 5799999999999997664433322 23455556666666999999987543
Q ss_pred cccCCCCCCCceeEEEEEEccc--ccCCceEeeeEeceecCCCCcccceEEEEEE
Q 046822 677 NIINNSGGRDSRIGKVRIRLST--LESDRVYTHSYPLLMLHPSGVKKMGELHLAV 729 (971)
Q Consensus 677 ~~~~~~~~~d~~iG~~~i~l~~--l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 729 (971)
+...||.+.|.+.. +...-.-..||-|. .+ |. ..++|.|++
T Consensus 128 --------kk~hIgdI~InIn~dIIdk~FPKnkWy~c~-kD--Gq-~~cRIqLSF 170 (508)
T PTZ00447 128 --------KKVHIGQIKIDINASVISKSFPKNEWFVCF-KD--GQ-EICKVQMSF 170 (508)
T ss_pred --------ceeEEEEEEecccHHHHhccCCccceEEEe-cC--Cc-eeeeEEEEe
Confidence 67899999999986 33333336799884 22 32 237777766
No 306
>KOG4111 consensus Translocase of outer mitochondrial membrane complex, subunit TOM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.11 E-value=46 Score=31.04 Aligned_cols=68 Identities=19% Similarity=0.216 Sum_probs=39.5
Q ss_pred CCCCCcccCCCCCCCChhHHHHHHHHHHHHH-HHHHHHHHHHh-cHHHHHhhhccccChhhHHHHHHHHHHHHhh
Q 046822 853 PDELDEEFDSFPTSRGADIVRIRYDRLRSVA-GRIQTVVGDMA-TQGERFQALISWRDPRATFLFVIFCLFAAIG 925 (971)
Q Consensus 853 ~~~~dee~d~~~~~~~~~~~~~r~~~~~~~~-~~vQ~~~~~~a-~~~Er~~~l~~W~~p~~t~~~~~~~~~~~~~ 925 (971)
.|+.||.+|.+ ..+.|.+|+..|++|. ..+-+.++..| +...-+++++.++- .+.|++....+++.+-
T Consensus 29 ~d~~de~dd~e----~dETi~eRi~gLkEivp~g~R~~i~~~~~~av~~~kk~~~fsg-~a~Wi~tTt~lIL~vP 98 (136)
T KOG4111|consen 29 NDDVDEGDDSE----EDETILERIWGLKEIVPQGRRSAIGATAGDAVFVVKKLYSFSG-KAAWIATTTFLILVVP 98 (136)
T ss_pred ccccccccCCC----cchhHHHHHHhhHhhcchhhhhhhhhcchhHHHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 34556665554 3678889999887773 33444555443 34555677776665 3555555544444433
No 307
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=46.69 E-value=5.9 Score=46.95 Aligned_cols=96 Identities=10% Similarity=0.009 Sum_probs=62.4
Q ss_pred CCCCcEEEEEEcCe-EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCCceeEEEEEeCccccccC
Q 046822 25 GSSSPFVEVEFEKQ-ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNE 103 (971)
Q Consensus 25 g~~dPyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~ 103 (971)
...+||+.|.+.-. ...+.++..+..|.|+|+|...+... ..+.|.||+..... .+.+.-.+++..+++.. .
T Consensus 26 ~al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~-----~~~~i~v~~~~~~~-~~~~~a~~~~~~e~~k~-~ 98 (694)
T KOG0694|consen 26 QALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAG-----GAKNIIVLLKSPDP-KALSEAQLSLQEESQKL-L 98 (694)
T ss_pred hhhhhhheeccceeecccccCCCCCCCchhhhheeeeeecC-----CceEEEEEecCCcc-hhhHHHhHHHHHHHHHH-H
Confidence 35689999998743 45666788999999999999997643 67899999865433 34444444444444433 1
Q ss_pred CcccceEEEeEeCCCCCeeeeEEEEEEEeee
Q 046822 104 GEATAQLYTLEKRSLFSHIRGEISLKLFVST 134 (971)
Q Consensus 104 ~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (971)
.....-|..++. .|.+...+.+..
T Consensus 99 ~~~~~~w~~~~~-------~g~~~~~~~~~~ 122 (694)
T KOG0694|consen 99 ALEQRLWVLIEE-------LGTLLKPAALTG 122 (694)
T ss_pred hhhhhhcccccc-------ccceeeeecccC
Confidence 122235777543 377777666544
No 308
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=46.59 E-value=60 Score=32.54 Aligned_cols=47 Identities=15% Similarity=0.344 Sum_probs=35.0
Q ss_pred CCCCcccceeEEEeecCC--CCeEEEEEEeCcCC-----CCCceeEEEEEeccc
Q 046822 479 LSNPCWNEDLLFVVAEPF--EDYLLISVEDHVGP-----GKDEIVGKVLIPVSA 525 (971)
Q Consensus 479 ~~nP~w~e~f~f~~~~~~--~~~L~v~V~d~d~~-----~~d~~iG~~~i~L~~ 525 (971)
+.+|.|+|+|.+.++... ...|.+++++.... .....+|.+.++|-+
T Consensus 62 ~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 62 HKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred CCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 389999999998886554 45899999986522 235578888888764
No 309
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=45.48 E-value=24 Score=40.14 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=34.1
Q ss_pred eeEEEEEEccc-ccCCceEeeeEeceecCCCCcccceEEEEEEEEeec
Q 046822 688 RIGKVRIRLST-LESDRVYTHSYPLLMLHPSGVKKMGELHLAVRFSCA 734 (971)
Q Consensus 688 ~iG~~~i~l~~-l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 734 (971)
.+|.+.|++.. +.++...+.|||+......+.. .|.+ +.++|+..
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~-~~~l-lk~~~~~~ 46 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVG-EGLI-IKVSSEEN 46 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcC-cceE-EEEEeeec
Confidence 48999999999 6777777899999976554432 3777 78887743
No 310
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=45.47 E-value=64 Score=32.34 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=33.7
Q ss_pred EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEEEeCCC
Q 046822 39 ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNVFNERR 81 (971)
Q Consensus 39 ~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~ 81 (971)
...|.+...+.+|.|+|++.+.+... ......|.|+.||...
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~-l~~~hHLlFtF~Hvs~ 96 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPAD-LTDNHHLLFTFYHISC 96 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCC-CCCCeEEEEEEEEeec
Confidence 57788888999999999999998642 2345799999999654
No 311
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=45.06 E-value=34 Score=36.46 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=30.7
Q ss_pred EEEEEEEEeecchhHHHHhhcCCCCCC-CcccCCCchhhHHHHHHH
Q 046822 724 ELHLAVRFSCANLVNMLHMYAMPLLPK-MHYVHPLSVHQLETLRYQ 768 (971)
Q Consensus 724 ~i~l~~~f~~~~~~~~~~~~~~p~~p~-~~y~~p~~~~~~~~l~~~ 768 (971)
.+.++++|| ++|+.|..|+ +||..|-..+++++.-..
T Consensus 33 nl~vaIDfT--------~SNg~p~~~~SLHy~~~~~~N~Yq~aI~~ 70 (254)
T cd01459 33 NLIVAIDFT--------KSNGWPGEKRSLHYISPGRLNPYQKAIRI 70 (254)
T ss_pred eEEEEEEeC--------CCCCCCCCCCCcccCCCCCccHHHHHHHH
Confidence 677888888 8999999998 999998888888765444
No 312
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=44.66 E-value=1e+02 Score=31.06 Aligned_cols=65 Identities=8% Similarity=0.082 Sum_probs=42.8
Q ss_pred EEEeeecccCCCCCeecceeEEEeeC---CCcEEEEEEEeCCCCCccccCCCCCCCceeEEEEEEccc
Q 046822 634 KWVRTRTVVDSLSPKWNEQYTWEVFD---PCTVITVGVFDNCSLDKNIINNSGGRDSRIGKVRIRLST 698 (971)
Q Consensus 634 ~~~rT~~~~~~~nP~Wne~~~~~v~~---~~~~l~i~V~D~~~~~~~~~~~~~~~d~~iG~~~i~l~~ 698 (971)
..+.|.+.+++.+|.|+|++-+.+.- +...|.++.++-+--...+..........+|-+-+||-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 46788899999999999998887762 334899999986521100000112234567888888765
No 313
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=42.46 E-value=2.2e+02 Score=27.25 Aligned_cols=72 Identities=15% Similarity=0.111 Sum_probs=52.5
Q ss_pred CCceEEEEEECCeEEEeeecCCCCCCCCCCCcccceeEEEeecCC------------CCeEEEEEEeCcCCCCCceeEEE
Q 046822 452 FPELHAKAQVGNQFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPF------------EDYLLISVEDHVGPGKDEIVGKV 519 (971)
Q Consensus 452 ~~dpyv~v~~g~~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~------------~~~L~v~V~d~d~~~~d~~iG~~ 519 (971)
+.|.|+.+.+=++..||+.. ...---.++|.|.|.-..+. .+.+.++++...... .+.|+..
T Consensus 19 ~~~vyL~v~~lg~~~~T~~~-----ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~-g~iLA~y 92 (140)
T PF14909_consen 19 KGDVYLSVCILGQYKRTRCL-----PPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPA-GEILAYY 92 (140)
T ss_pred CCCEEEEEEEcccEeecccC-----CCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCC-CcEEEEE
Confidence 45999999999999999987 33333357888888644332 347889998875433 7889999
Q ss_pred EEeccccccc
Q 046822 520 LIPVSAVERR 529 (971)
Q Consensus 520 ~i~L~~l~~~ 529 (971)
+-++.++...
T Consensus 93 e~n~rDfLfP 102 (140)
T PF14909_consen 93 EENTRDFLFP 102 (140)
T ss_pred eccccceEcC
Confidence 8888887643
No 314
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=42.30 E-value=8.3 Score=38.15 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=0.0
Q ss_pred HhhhccccChhhHHHHHHHHHHHHhhh
Q 046822 900 FQALISWRDPRATFLFVIFCLFAAIGF 926 (971)
Q Consensus 900 ~~~l~~W~~p~~t~~~~~~~~~~~~~~ 926 (971)
+++++.|+||..|+..++++.++-.++
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~ 27 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLF 27 (169)
T ss_dssp ---------------------------
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHH
Confidence 468999999999998777666633333
No 315
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=41.51 E-value=71 Score=35.87 Aligned_cols=111 Identities=22% Similarity=0.229 Sum_probs=64.7
Q ss_pred CCCcEEEEEEcCeEEEeecccC----CCCC-e---eeeeeEEecCCCCCCCc--------ceEEEEEEeCCC-----CCC
Q 046822 26 SSSPFVEVEFEKQILRTQVKYK----DLNP-I---WNEKLVFDVPDIAELPY--------KHIEVNVFNERR-----SSN 84 (971)
Q Consensus 26 ~~dPyv~v~~~~~~~~T~~~~~----t~nP-~---wne~f~f~v~~~~~l~~--------~~L~i~V~d~~~-----~~~ 84 (971)
++..||+|++.+-..+|..+.- +.+| . ---.|+++-.+.+.+.. ..|+|.||.-.+ ++.
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 3456999999986656655531 1111 1 12456655322222221 469999998432 112
Q ss_pred CCceeEEEEEeCccccccCC--cccceEEEeEeCCCC--CeeeeEEEEEEEeeecc
Q 046822 85 SRNFLGKVRAPCSQLCKNEG--EATAQLYTLEKRSLF--SHIRGEISLKLFVSTTE 136 (971)
Q Consensus 85 ~d~~lG~~~i~l~~l~~~~~--~~~~~w~~L~~~~~~--~~~~G~i~l~~~~~~~~ 136 (971)
+.++||++.++++--..... ..+..|..+-+.... .....+|++.+...+++
T Consensus 115 ~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpDP 170 (460)
T PF06219_consen 115 SGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPDP 170 (460)
T ss_pred cceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCCC
Confidence 56899999999985433333 344679999766321 12457888887765444
No 316
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=40.92 E-value=2.8e+02 Score=31.45 Aligned_cols=104 Identities=19% Similarity=0.262 Sum_probs=57.8
Q ss_pred CcEEEEEECCEEEeeeccc--C--CCC-Ceec---ceeEEEee-------CC-----CcEEEEEEEeCCCCCccccCCCC
Q 046822 624 DAYCVAKYGQKWVRTRTVV--D--SLS-PKWN---EQYTWEVF-------DP-----CTVITVGVFDNCSLDKNIINNSG 683 (971)
Q Consensus 624 dpy~~~~~g~~~~rT~~~~--~--~~n-P~Wn---e~~~~~v~-------~~-----~~~l~i~V~D~~~~~~~~~~~~~ 683 (971)
..||+|++.+--.+|..+. . +.+ |.-+ -.|.++-. .+ ...|+|.||--..-. ..+-.
T Consensus 37 pCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~---tCGv~ 113 (460)
T PF06219_consen 37 PCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGS---TCGVG 113 (460)
T ss_pred CeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCC---ccccc
Confidence 7899999987766776652 1 112 1211 13444211 12 247999999855321 11112
Q ss_pred CCCceeEEEEEEcccccC--Cc---eEeeeEeceecCCC-CcccceEEEEEEEE
Q 046822 684 GRDSRIGKVRIRLSTLES--DR---VYTHSYPLLMLHPS-GVKKMGELHLAVRF 731 (971)
Q Consensus 684 ~~d~~iG~~~i~l~~l~~--~~---~~~~~~~L~~~~~~-g~~~~G~i~l~~~f 731 (971)
.+-.+||+++|+|. +.. ++ .+..|..+-..+.. +.+...+|||.++.
T Consensus 114 ~~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~ 166 (460)
T PF06219_consen 114 NSGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRA 166 (460)
T ss_pred ccceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEec
Confidence 46789999999997 321 22 23557666533221 12235789987763
No 317
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=40.77 E-value=83 Score=31.53 Aligned_cols=56 Identities=11% Similarity=0.151 Sum_probs=38.7
Q ss_pred eEEEeeecCCCCCCCCCCCcccceeEEEeecCCC--CeEEEEEEeCcCCC------CCceeEEEEEecc
Q 046822 464 QFLKTRIAAPSATRSLSNPCWNEDLLFVVAEPFE--DYLLISVEDHVGPG------KDEIVGKVLIPVS 524 (971)
Q Consensus 464 ~~~rT~~~~~~~~~~~~nP~w~e~f~f~~~~~~~--~~L~v~V~d~d~~~------~d~~iG~~~i~L~ 524 (971)
..+.|.+. ..+.+|.|+|++.+.++.... ..|.|+.++..-.. .+..+|.+.++|-
T Consensus 54 ~~~~S~V~-----yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 54 TEAYTAVT-----YHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eeEEEEEE-----EeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 46677877 778899999999888765543 48999998843211 1235676666654
No 318
>PHA01159 hypothetical protein
Probab=39.66 E-value=91 Score=28.39 Aligned_cols=80 Identities=18% Similarity=0.158 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHhhhccccChhhHHHHHHHHHHHHhhhhhhhhhhhhhheeeccccCCcccCCCCC
Q 046822 875 RYDRLRSVAGRIQTVVGDMATQGERFQALISWRDPRATFLFVIFCLFAAIGFYAVPVRVVFALSGVYVLRPPRFRSKLPS 954 (971)
Q Consensus 875 r~~~~~~~~~~vQ~~~~~~a~~~Er~~~l~~W~~p~~t~~~~~~~~~~~~~~~~vp~r~i~l~~g~~~~r~p~~~~~~~~ 954 (971)
-|..|..|+..-|..++..++..+-+++.|-|-.-++-.+-+-+.+...=+.|- -.|.++-=.|++ +
T Consensus 4 i~~~L~~I~~~~qt~~dFf~~~~d~i~~~fv~~~~~~i~~~l~~~I~~i~~sY~-~A~~Ll~~iG~~------------s 70 (114)
T PHA01159 4 LYSALEFIANIGQTFLDFFDVAIDWIKNAFVYGAMWLISVWLDILIASIQIAYK-IAQLLLEEYGVY------------T 70 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCHH------------H
Confidence 367789999999999999999999999999886655544444444333334444 345566566777 7
Q ss_pred hhhhhhhcCCCCc
Q 046822 955 PALSFFRRLPSKA 967 (971)
Q Consensus 955 ~~~~~~~r~p~~~ 967 (971)
-+.+.|++|||+.
T Consensus 71 ~i~s~fnaLPsei 83 (114)
T PHA01159 71 MVESRFNALPSDI 83 (114)
T ss_pred HHHHHHHhCCHHH
Confidence 7778888888864
No 319
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=39.56 E-value=1.2e+02 Score=28.89 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=59.3
Q ss_pred EEEEEEEeecCCCCCCCCeEEEEEECCeeeeeeeecCC-CCccccEEEEecc-----C-------CCcceEEEEEecC--
Q 046822 274 LYVRVVKARDISLFGGGEIVAEVKLGNYRGITKRVSSN-HLQWDQVFAFSKD-----C-------IQSSAAEIFVKES-- 338 (971)
Q Consensus 274 L~V~v~~a~~L~~~~~~dpyV~v~~~~~~~kT~~~~~~-nP~wne~f~f~~~-----~-------~~~~~l~v~v~D~-- 338 (971)
|.|+-+.|-+.-....-|-|..|++.|+..+|+..... =-.++|.|.|... + +....+.++++.-
T Consensus 4 L~i~aVTCPGv~L~~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~ 83 (140)
T PF14909_consen 4 LEIHAVTCPGVWLCDKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVP 83 (140)
T ss_pred EEEEEEecCCeEeCCCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeC
Confidence 44454555443233667999999999999999988766 4468999999743 1 2355677777765
Q ss_pred CCCcccEEEEEEccccCC
Q 046822 339 DKDDFLGRIWFDLNEVPR 356 (971)
Q Consensus 339 ~~d~~lG~~~i~l~~l~~ 356 (971)
...+.|+...-++.|+.-
T Consensus 84 ~~g~iLA~ye~n~rDfLf 101 (140)
T PF14909_consen 84 PAGEILAYYEENTRDFLF 101 (140)
T ss_pred CCCcEEEEEeccccceEc
Confidence 457888888888888765
No 320
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=38.77 E-value=3.3e+02 Score=26.93 Aligned_cols=84 Identities=10% Similarity=0.101 Sum_probs=58.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEc----------Ce-EEEeecccC-----CCCCeeeeeeEEecCCCCCCCcce
Q 046822 8 LVVEVIAAHNLMPKDGEGSSSPFVEVEFE----------KQ-ILRTQVKYK-----DLNPIWNEKLVFDVPDIAELPYKH 71 (971)
Q Consensus 8 L~V~V~~a~~L~~~d~~g~~dPyv~v~~~----------~~-~~~T~~~~~-----t~nP~wne~f~f~v~~~~~l~~~~ 71 (971)
+.=.|.+|.+.. ..+-||+..+. .. ...|.+-.. +..-.||.-|.+.+.......-..
T Consensus 4 v~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 455678888653 45679988763 12 455555432 334689999988876655445579
Q ss_pred EEEEEEeCCCCCCCCceeEEEEEeCcc
Q 046822 72 IEVNVFNERRSSNSRNFLGKVRAPCSQ 98 (971)
Q Consensus 72 L~i~V~d~~~~~~~d~~lG~~~i~l~~ 98 (971)
|.|+||..|..+ ++...|-..+.|-.
T Consensus 78 L~l~V~~~D~~g-r~~~~GYG~~~lP~ 103 (168)
T PF07162_consen 78 LVLQVYSLDSWG-RDRVEGYGFCHLPT 103 (168)
T ss_pred EEEEEEEEcccC-CeEEeEEeEEEeCC
Confidence 999999999987 68888776665533
No 321
>PF14851 FAM176: FAM176 family
Probab=37.92 E-value=67 Score=31.14 Aligned_cols=13 Identities=15% Similarity=0.064 Sum_probs=6.7
Q ss_pred cccCCchhHHHHH
Q 046822 790 RNWHKPIYSTLSL 802 (971)
Q Consensus 790 ~~W~~p~~s~~~~ 802 (971)
+-|++|-+-+|.|
T Consensus 14 ~I~~~PE~~aLYF 26 (153)
T PF14851_consen 14 HIRDNPERFALYF 26 (153)
T ss_pred HHHhChHHHHHHH
Confidence 4466665544433
No 322
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=36.96 E-value=75 Score=39.31 Aligned_cols=85 Identities=18% Similarity=0.220 Sum_probs=66.3
Q ss_pred CCcEEEEEEcCe-EEEeecccCC-CCCeeeeeeEEecCCCCCCCcceEEEEEEeCCCCCCCCceeEEEEEeCccccccCC
Q 046822 27 SSPFVEVEFEKQ-ILRTQVKYKD-LNPIWNEKLVFDVPDIAELPYKHIEVNVFNERRSSNSRNFLGKVRAPCSQLCKNEG 104 (971)
Q Consensus 27 ~dPyv~v~~~~~-~~~T~~~~~t-~nP~wne~f~f~v~~~~~l~~~~L~i~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~ 104 (971)
+++|+.+.+..- ..+|....+. .+|.|.+.|........ ..+.+.|-+.+..+ ....+|.+.++...+...
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~----g~v~~~~~~~~~~G-~s~~w~~v~~s~~~~~~~-- 210 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKA----GYVIFRVKGARVPG-WSKRWGRVKISFLQYCSG-- 210 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccc----cEEEEeecCCcccc-ceeEEEEeccchhhhhcc--
Confidence 589999998865 4677777666 78999999988877766 78999998888765 578999999999998752
Q ss_pred cccceEEEeEeCCC
Q 046822 105 EATAQLYTLEKRSL 118 (971)
Q Consensus 105 ~~~~~w~~L~~~~~ 118 (971)
.....|+++.....
T Consensus 211 ~~~~~~~~Il~~d~ 224 (887)
T KOG1329|consen 211 HRIGGWFPILDNDG 224 (887)
T ss_pred ccccceeeeeccCC
Confidence 33457888876544
No 323
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=33.24 E-value=3.1e+02 Score=25.75 Aligned_cols=94 Identities=16% Similarity=0.290 Sum_probs=54.5
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEcCeEE-EeecccCCCCCee-eeeeEEecCCCCCCCcceEEEEEEeCCCC
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFEKQIL-RTQVKYKDLNPIW-NEKLVFDVPDIAELPYKHIEVNVFNERRS 82 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~~~~~-~T~~~~~t~nP~w-ne~f~f~v~~~~~l~~~~L~i~V~d~~~~ 82 (971)
...|.++=+.-.+++.-+..+.+.||++|.-++... .|....... ... ...+.+.+...-.+ ...+.|.+|+....
T Consensus 3 ~~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~l-~GDV~i~~~~~~~~ 80 (134)
T PF10409_consen 3 PRPLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDP-KSYEQDSVIIELPKNLPL-RGDVLIKFYHKRSS 80 (134)
T ss_dssp --EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCC-CEEETTCEEEEEEEEEEE-ESEEEEEEEECETT
T ss_pred CeeEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceecc-ccccceeEEEEeCCCCeE-eCCEEEEEEeCCCc
Confidence 345666666677787776677899999999887765 344333221 222 13333333211111 25788899987732
Q ss_pred CCCCceeEEEEEeCcccc
Q 046822 83 SNSRNFLGKVRAPCSQLC 100 (971)
Q Consensus 83 ~~~d~~lG~~~i~l~~l~ 100 (971)
...++.+.++.+...-+.
T Consensus 81 ~~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 81 SMSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp ECCCEEEEEEEEEGGGSB
T ss_pred ccccCeEEEEEEeeeeee
Confidence 225677888887766654
No 324
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=31.89 E-value=1.4e+02 Score=25.98 Aligned_cols=34 Identities=9% Similarity=0.277 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHhhhccccChhhH
Q 046822 879 LRSVAGRIQTVVGDMATQGERFQALISWRDPRAT 912 (971)
Q Consensus 879 ~~~~~~~vQ~~~~~~a~~~Er~~~l~~W~~p~~t 912 (971)
|.+-+...+..-........+++.-+-|+.=...
T Consensus 36 L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~ 69 (89)
T PF00957_consen 36 LEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLY 69 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666666777777888774333
No 325
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=31.74 E-value=5.1 Score=46.46 Aligned_cols=74 Identities=14% Similarity=0.057 Sum_probs=49.4
Q ss_pred eEEEEEEEEeecCC-------CCCCCCeEEEEEECCeeeeeeeecCC-CCccccEEEEeccCCCcceEEEEEecCCCCcc
Q 046822 272 QYLYVRVVKARDIS-------LFGGGEIVAEVKLGNYRGITKRVSSN-HLQWDQVFAFSKDCIQSSAAEIFVKESDKDDF 343 (971)
Q Consensus 272 ~~L~V~v~~a~~L~-------~~~~~dpyV~v~~~~~~~kT~~~~~~-nP~wne~f~f~~~~~~~~~l~v~v~D~~~d~~ 343 (971)
+....+++.|.+++ ..-..++++.+.++.+.++|+....+ +|+|||. .|...+.+.... ....+
T Consensus 280 gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~-------l~~ki 351 (975)
T KOG2419|consen 280 GIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRY-------LGNKI 351 (975)
T ss_pred hhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHH-------Hhhhc
Confidence 44444566666664 23467899999999999999999999 9999996 444433331110 24456
Q ss_pred cEEEEEEccc
Q 046822 344 LGRIWFDLNE 353 (971)
Q Consensus 344 lG~~~i~l~~ 353 (971)
+|.|.+++.+
T Consensus 352 v~~~~~~lnd 361 (975)
T KOG2419|consen 352 VGYCELDLND 361 (975)
T ss_pred cccccccccc
Confidence 6666666665
No 326
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=31.58 E-value=72 Score=39.18 Aligned_cols=121 Identities=13% Similarity=0.098 Sum_probs=67.3
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEc----Ce----EEEeecccCCCCCeeeeeeEEecCCCCCCCcceEEEEE
Q 046822 5 KEKLVVEVIAAHNLMPKDGEGSSSPFVEVEFE----KQ----ILRTQVKYKDLNPIWNEKLVFDVPDIAELPYKHIEVNV 76 (971)
Q Consensus 5 ~~~L~V~V~~a~~L~~~d~~g~~dPyv~v~~~----~~----~~~T~~~~~t~nP~wne~f~f~v~~~~~l~~~~L~i~V 76 (971)
+..++|+++++.++.. ....|-+|.|..+ ++ ...|..+..+.+|.||+..+|++.-.+.-....|.|.|
T Consensus 342 ~~~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i 418 (1076)
T KOG0904|consen 342 DRPFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAI 418 (1076)
T ss_pred CCceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeee
Confidence 3467888888877643 2355677777664 33 24555555688999999999997644322346788888
Q ss_pred EeCCCCCCCCceeEEEEEeCccccccCCcccceEEEeEeCCCCC-eeeeEEEEEEEe
Q 046822 77 FNERRSSNSRNFLGKVRAPCSQLCKNEGEATAQLYTLEKRSLFS-HIRGEISLKLFV 132 (971)
Q Consensus 77 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~ 132 (971)
|--.....+. =-....+..... .......|..+.--+.+. -..|+..+.++-
T Consensus 419 ~~v~~~~~s~--~~s~~~~~kk~k--~~~~plaWvN~~lfD~kd~LrtG~~~Lh~W~ 471 (1076)
T KOG0904|consen 419 YAVKAKAKSK--KNSAESTKKKSK--KEHCPLAWVNLMLFDHKDQLRTGEYVLHMWP 471 (1076)
T ss_pred eEeechhccc--cccchhhhhccc--cccCceEEEeeeeeechhhhhcCceEEEecC
Confidence 8643211010 000111111111 122334677765433222 246888888764
No 327
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.18 E-value=2.4e+02 Score=27.28 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred cCcEEEEEE--CCEE-----------EeeecccCCCCC-eecceeEEEeeCCCc----EEEEEEEeCCCCCccccCCCCC
Q 046822 623 VDAYCVAKY--GQKW-----------VRTRTVVDSLSP-KWNEQYTWEVFDPCT----VITVGVFDNCSLDKNIINNSGG 684 (971)
Q Consensus 623 ~dpy~~~~~--g~~~-----------~rT~~~~~~~nP-~Wne~~~~~v~~~~~----~l~i~V~D~~~~~~~~~~~~~~ 684 (971)
+|.||+... |+.| .-|....+-.|| .||-.++...+..+- .|.+.||-.|.++
T Consensus 26 ~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G--------- 96 (187)
T KOG4027|consen 26 SDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSG--------- 96 (187)
T ss_pred CceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCC---------
Q ss_pred CCceeEEEEEEc
Q 046822 685 RDSRIGKVRIRL 696 (971)
Q Consensus 685 ~d~~iG~~~i~l 696 (971)
+|...|-..|++
T Consensus 97 ~d~v~GYg~~hi 108 (187)
T KOG4027|consen 97 KDCVTGYGMLHI 108 (187)
T ss_pred cceeeeeeeEec
No 328
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=28.56 E-value=1.5e+02 Score=32.05 Aligned_cols=69 Identities=14% Similarity=0.214 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHHHHHhhhccccChhhHHHHHHHHHHHHhhhhhhhhhhhhhheeeccccCC
Q 046822 872 VRIRYDRLRSVAGRIQTVVGDMATQGERFQALISWRDPRATFLFVIFCLFAAIGFYAVPVRVVFALSGVYVLRPP 946 (971)
Q Consensus 872 ~~~r~~~~~~~~~~vQ~~~~~~a~~~Er~~~l~~W~~p~~t~~~~~~~~~~~~~~~~vp~r~i~l~~g~~~~r~p 946 (971)
++.-++++..+..+++...+.+.+..+...+..+-+. .-.+-.+.+++ +.|+|+-+|.-++|.|+---|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----n~~m~~LT~~t--~iflPlt~i~g~fGMN~~~~p 262 (292)
T PF01544_consen 194 LRDLLDRIERLLERAESLRERLESLQDLYQSKLSNRQ----NRVMKVLTIVT--AIFLPLTFITGIFGMNFKGMP 262 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH----HHHHHHHHHHH--HHHHHHHHHTTSTTS-SS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH--HHHHHHHHHHHHhhCCccCCC
Confidence 5555566666666666666666666666666666652 22222333333 344899999999999954333
No 329
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=28.21 E-value=33 Score=41.89 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=49.4
Q ss_pred eeEEEEEEEEeecCCCCCCCCeEEEEEECC-----eeeeeeeecCC-CCccccEEEEeccCCCcceEEEEE
Q 046822 271 MQYLYVRVVKARDISLFGGGEIVAEVKLGN-----YRGITKRVSSN-HLQWDQVFAFSKDCIQSSAAEIFV 335 (971)
Q Consensus 271 ~~~L~V~v~~a~~L~~~~~~dpyV~v~~~~-----~~~kT~~~~~~-nP~wne~f~f~~~~~~~~~l~v~v 335 (971)
++.+.+.+++|..|. ....-||...+.. -+.+|+++.++ .|.||+.|+.++...+...|..+-
T Consensus 758 ygflh~~vhsat~lk--qs~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~sqS~r~~~~e 826 (1112)
T KOG4269|consen 758 YGFLHVIVHSATGLK--QSRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIESQSSRLEKTE 826 (1112)
T ss_pred ccceeeeeccccccc--cccceeeehhhhhhccccccccceeeecccCCCCChhcccchhhccccchhhhc
Confidence 467889999999887 5667788877652 57889999999 999999999988877655544333
No 330
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=22.50 E-value=3.1e+02 Score=33.88 Aligned_cols=17 Identities=24% Similarity=0.579 Sum_probs=14.3
Q ss_pred hhhhhhhhhhhhheeec
Q 046822 925 GFYAVPVRVVFALSGVY 941 (971)
Q Consensus 925 ~~~~vp~r~i~l~~g~~ 941 (971)
-++|||.+||++++..|
T Consensus 90 ~~~~~p~~~~~~~~~~~ 106 (697)
T PF09726_consen 90 CLFFIPVHWLFFAASTY 106 (697)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 45679999999998777
No 331
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=21.88 E-value=24 Score=41.26 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=33.3
Q ss_pred CCCcEEEEEEcCeEEEeecccCCCCCeeeeeeEEecCCC
Q 046822 26 SSSPFVEVEFEKQILRTQVKYKDLNPIWNEKLVFDVPDI 64 (971)
Q Consensus 26 ~~dPyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~ 64 (971)
..+|++...++.+..||+.-..+.+|+|||. .|++.+.
T Consensus 304 ~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~F 341 (975)
T KOG2419|consen 304 KDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDF 341 (975)
T ss_pred CCCchheeecchhhhhhhhhccccccccccc-ccccccc
Confidence 4689999999999999999999999999998 6666543
No 332
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=20.70 E-value=7.2e+02 Score=23.64 Aligned_cols=12 Identities=17% Similarity=0.047 Sum_probs=4.7
Q ss_pred hHHHHHHHHHHH
Q 046822 814 LVIPAILLYLSL 825 (971)
Q Consensus 814 l~~p~~~l~~~~ 825 (971)
+++..-.|.+++
T Consensus 57 wY~icY~LgiyL 68 (180)
T COG5249 57 WYLICYCLGIYL 68 (180)
T ss_pred hhhHHHHHHHHH
Confidence 334333343433
No 333
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=20.64 E-value=3.5e+02 Score=25.83 Aligned_cols=48 Identities=13% Similarity=0.253 Sum_probs=28.5
Q ss_pred ChhHHHHHHHHHHHHH-HHHHHHHHHH-hcHHHHHhhhccccChhhHHHHH
Q 046822 868 GADIVRIRYDRLRSVA-GRIQTVVGDM-ATQGERFQALISWRDPRATFLFV 916 (971)
Q Consensus 868 ~~~~~~~r~~~~~~~~-~~vQ~~~~~~-a~~~Er~~~l~~W~~p~~t~~~~ 916 (971)
..+.|.+|+-+|++|. -.+.+.+... ......+++++++.- .+.|++.
T Consensus 49 ~dETl~ERl~aLkdi~P~~~R~~i~~~~~~~~~~~k~~~~~~g-~a~Wi~t 98 (137)
T PF04281_consen 49 EDETLLERLWALKDIFPPSVRNWISSTVSTTSSAVKSLFSFSG-KALWIVT 98 (137)
T ss_pred ccccHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHH
Confidence 4678999999999883 3344444333 344455666666654 3444433
No 334
>PF08174 Anillin: Cell division protein anillin; InterPro: IPR012966 This is a conserved domain in the anillin family of proteins, which are involved in cell division []. In Schizosaccharomyces pombe (Fission yeast, anillin (Mid2) is involved in septin ring organisation and cell separation [, ]. The domain is found adjacent to a 'pleckstrin homology' (PH) domain. The PH domain occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton (IPR001849 from INTERPRO).
Probab=20.62 E-value=4.5e+02 Score=24.86 Aligned_cols=48 Identities=29% Similarity=0.581 Sum_probs=35.0
Q ss_pred CcEEEEEEC-CEEEeeeccc--C-C---CCCeecceeEEEeeCCCcEEEEEEEeC
Q 046822 624 DAYCVAKYG-QKWVRTRTVV--D-S---LSPKWNEQYTWEVFDPCTVITVGVFDN 671 (971)
Q Consensus 624 dpy~~~~~g-~~~~rT~~~~--~-~---~nP~Wne~~~~~v~~~~~~l~i~V~D~ 671 (971)
--||.+++| ..|..|.++. + + ..-.+++.+.|....+.-.|+|+||..
T Consensus 35 ~~~~l~k~~~~~~~~t~~~~~~dgs~~~~~i~f~~~~~~~~~~~dF~v~vevy~~ 89 (140)
T PF08174_consen 35 AFFCLLKYGPEEWDATFLVVARDGSFARTDICFPDTFEFSNVGPDFEVTVEVYNE 89 (140)
T ss_pred EEEEEEecCCceEEEEeeEEccCcccccceEecCceeeecccCCCcEEEEEEEEE
Confidence 356777778 7787777442 2 1 235677788888887888999999998
No 335
>PF14963 CAML: Calcium signal-modulating cyclophilin ligand
Probab=20.01 E-value=5.3e+02 Score=27.06 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHhhhccc
Q 046822 798 STLSLAFFFLLVLMPELVIPAILLYLSLLGLWRYRS 833 (971)
Q Consensus 798 s~~~~~~~~~~~~~~~l~~p~~~l~~~~~~~~~~~~ 833 (971)
.++|.++=+++|-|-.++.|++.|-+++.++..|+.
T Consensus 168 ~~lAv~VR~fvCkyLsi~~pfl~l~l~~~gl~~~~~ 203 (263)
T PF14963_consen 168 ALLAVFVRLFVCKYLSIFAPFLTLQLAYMGLSKYFP 203 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcc
Confidence 345555555566677777899998888888888874
Done!