Your job contains 1 sequence.
>046825
CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK
LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL
QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGE
TFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSG
PLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKG
GDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQ
RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE
RVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP
GKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTY
NADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKD
TFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQ
VITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKS
GKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQE
LYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHL
EALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGL
LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP
RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY
SVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRN
QEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLA
QPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVIT
CPLLVGKT
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 046825
(1208 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2076661 - symbol:NRPA1 "nuclear RNA polymerase... 1811 0. 3
DICTYBASE|DDB_G0275759 - symbol:rpa1 "RNA polymerase I, l... 1002 9.9e-204 5
CGD|CAL0001661 - symbol:RPA190 species:5476 "Candida albi... 863 1.4e-196 4
POMBASE|SPBC4C3.05c - symbol:nuc1 "DNA-directed RNA polym... 774 9.7e-189 4
UNIPROTKB|G4NBX7 - symbol:MGG_01158 "DNA-directed RNA pol... 797 7.4e-181 4
SGD|S000005868 - symbol:RPA190 "RNA polymerase I largest ... 873 3.2e-180 3
UNIPROTKB|B9ZVN9 - symbol:POLR1A "DNA-directed RNA polyme... 706 1.2e-178 6
UNIPROTKB|O95602 - symbol:POLR1A "DNA-directed RNA polyme... 706 1.9e-178 6
UNIPROTKB|G3V7B7 - symbol:Polr1a "DNA-directed RNA polyme... 717 8.7e-176 6
ZFIN|ZDB-GENE-030131-5286 - symbol:polr1a "polymerase (RN... 716 2.3e-175 6
MGI|MGI:1096397 - symbol:Polr1a "polymerase (RNA) I polyp... 708 3.0e-175 6
RGD|620824 - symbol:Polr1a "polymerase (RNA) I polypeptid... 711 5.2e-175 6
UNIPROTKB|E1BIX2 - symbol:POLR1A "DNA-directed RNA polyme... 696 9.2e-175 6
UNIPROTKB|F1SVC3 - symbol:POLR1A "DNA-directed RNA polyme... 705 6.7e-174 6
UNIPROTKB|J9P5G4 - symbol:POLR1A "DNA-directed RNA polyme... 707 9.2e-174 6
UNIPROTKB|E2R0G4 - symbol:POLR1A "DNA-directed RNA polyme... 707 4.9e-173 6
FB|FBgn0019938 - symbol:RpI1 "RNA polymerase I subunit" s... 697 1.2e-168 6
WB|WBGene00012999 - symbol:rpoa-1 species:6239 "Caenorhab... 675 3.6e-160 5
UNIPROTKB|F1LQN7 - symbol:Polr1a "DNA-directed RNA polyme... 682 2.1e-125 5
DICTYBASE|DDB_G0279193 - symbol:rpb1 "RNA polymerase II c... 390 5.1e-103 7
GENEDB_PFALCIPARUM|PF13_0150 - symbol:PF13_0150 "DNA-dire... 331 5.9e-101 7
UNIPROTKB|Q8IE49 - symbol:PF13_0150 "DNA-directed RNA pol... 331 5.9e-101 7
ZFIN|ZDB-GENE-050208-103 - symbol:polr3a "polymerase (RNA... 344 2.1e-100 7
POMBASE|SPBC28F2.12 - symbol:rpb1 "RNA polymerase II larg... 368 2.3e-100 7
DICTYBASE|DDB_G0277199 - symbol:rpc1 "RNA polymerase III,... 336 3.1e-100 7
ASPGD|ASPL0000054301 - symbol:AN0809 species:162425 "Emer... 347 5.7e-100 7
UNIPROTKB|E9PTB6 - symbol:Polr3a "DNA-directed RNA polyme... 337 9.4e-100 7
FB|FBgn0030687 - symbol:CG17209 species:7227 "Drosophila ... 494 1.0e-98 7
POMBASE|SPBC651.08c - symbol:rpc1 "DNA-directed RNA polym... 339 2.5e-98 7
CGD|CAL0000919 - symbol:RPO21 species:5476 "Candida albic... 368 4.2e-97 7
UNIPROTKB|Q5ACI7 - symbol:RPO21 "DNA-directed RNA polymer... 368 4.2e-97 7
ASPGD|ASPL0000047704 - symbol:AN10316 species:162425 "Eme... 342 5.6e-97 6
SGD|S000005642 - symbol:RPO31 "RNA polymerase III largest... 313 2.7e-96 8
UNIPROTKB|G4MT89 - symbol:MGG_04652 "DNA-directed RNA pol... 358 6.5e-96 7
WB|WBGene00004411 - symbol:rpc-1 species:6239 "Caenorhabd... 334 7.5e-95 6
CGD|CAL0002215 - symbol:orf19.3103 species:5476 "Candida ... 311 3.4e-94 7
SGD|S000002299 - symbol:RPO21 "RNA polymerase II largest ... 351 7.9e-94 7
UNIPROTKB|J9NW09 - symbol:POLR2A "DNA-directed RNA polyme... 351 1.3e-93 7
UNIPROTKB|F1PGS0 - symbol:POLR2A "DNA-directed RNA polyme... 351 3.2e-93 7
RGD|1587326 - symbol:Polr2a "polymerase (RNA) II (DNA dir... 351 3.2e-93 7
UNIPROTKB|G3MZY8 - symbol:POLR2A "DNA-directed RNA polyme... 351 4.1e-93 7
UNIPROTKB|P24928 - symbol:POLR2A "DNA-directed RNA polyme... 351 4.1e-93 7
MGI|MGI:98086 - symbol:Polr2a "polymerase (RNA) II (DNA d... 351 4.1e-93 7
ZFIN|ZDB-GENE-041008-78 - symbol:polr2a "polymerase (RNA)... 344 5.2e-93 6
WB|WBGene00000123 - symbol:ama-1 species:6239 "Caenorhabd... 347 5.7e-92 7
UNIPROTKB|P16356 - symbol:ama-1 "DNA-directed RNA polymer... 347 5.7e-92 7
UNIPROTKB|H9L2Z2 - symbol:H9L2Z2 "DNA-directed RNA polyme... 672 8.7e-86 3
UNIPROTKB|H9L2Z3 - symbol:H9L2Z3 "DNA-directed RNA polyme... 678 9.8e-86 3
UNIPROTKB|H9L2Z1 - symbol:H9L2Z1 "DNA-directed RNA polyme... 677 1.3e-85 3
FB|FBgn0003277 - symbol:RpII215 "RNA polymerase II 215kD ... 354 1.5e-85 6
UNIPROTKB|H9L2Z0 - symbol:H9L2Z0 "DNA-directed RNA polyme... 675 2.2e-85 3
UNIPROTKB|A4IF62 - symbol:POLR3A "DNA-directed RNA polyme... 337 2.1e-83 6
UNIPROTKB|F1S2E6 - symbol:POLR3A "DNA-directed RNA polyme... 337 3.4e-83 6
UNIPROTKB|J9P629 - symbol:POLR3A "DNA-directed RNA polyme... 337 4.3e-83 6
UNIPROTKB|O14802 - symbol:POLR3A "DNA-directed RNA polyme... 337 5.5e-83 6
UNIPROTKB|Q5ZL98 - symbol:POLR3A "DNA-directed RNA polyme... 339 3.5e-82 6
UNIPROTKB|F1NIK7 - symbol:POLR3A "DNA-directed RNA polyme... 339 5.7e-82 6
UNIPROTKB|I3LJR4 - symbol:POLR2A "DNA-directed RNA polyme... 351 9.4e-78 6
UNIPROTKB|F1NJE0 - symbol:POLR1A "DNA-directed RNA polyme... 539 4.0e-72 2
UNIPROTKB|E2QXD8 - symbol:POLR3A "DNA-directed RNA polyme... 350 5.7e-71 6
UNIPROTKB|Q6NX41 - symbol:POLR2A "DNA-directed RNA polyme... 270 2.0e-42 3
UNIPROTKB|E1C4T2 - symbol:POLR1A "Uncharacterized protein... 272 8.0e-40 2
UNIPROTKB|P37871 - symbol:rpoC "DNA-directed RNA polymera... 174 1.0e-31 7
TIGR_CMR|BA_0103 - symbol:BA_0103 "DNA-directed RNA polym... 175 1.7e-31 7
UNIPROTKB|P0A674 - symbol:rpoC "DNA-directed RNA polymera... 169 8.1e-31 5
TIGR_CMR|CHY_2317 - symbol:CHY_2317 "DNA-directed RNA pol... 171 1.5e-30 6
UNIPROTKB|P0A8T7 - symbol:rpoC "RNA polymerase, beta' sub... 177 3.5e-30 5
TIGR_CMR|SO_0225 - symbol:SO_0225 "DNA-directed RNA polym... 178 1.1e-29 6
TIGR_CMR|ECH_0951 - symbol:ECH_0951 "DNA-directed RNA pol... 184 1.3e-29 6
UNIPROTKB|Q9KV29 - symbol:rpoC "DNA-directed RNA polymera... 179 1.3e-29 7
TIGR_CMR|VC_0329 - symbol:VC_0329 "DNA-directed RNA polym... 179 1.3e-29 7
TIGR_CMR|CPS_4768 - symbol:CPS_4768 "DNA-directed RNA pol... 178 2.7e-29 6
TIGR_CMR|CBU_0232 - symbol:CBU_0232 "DNA-directed RNA pol... 180 9.0e-29 5
TIGR_CMR|CJE_0529 - symbol:CJE_0529 "DNA-directed RNA pol... 155 1.1e-28 7
TIGR_CMR|APH_1023 - symbol:APH_1023 "DNA-directed RNA pol... 172 1.5e-28 6
TIGR_CMR|DET_0604 - symbol:DET_0604 "DNA-directed RNA pol... 165 1.9e-28 6
TIGR_CMR|SPO_3507 - symbol:SPO_3507 "DNA-directed RNA pol... 174 6.0e-28 6
TIGR_CMR|NSE_0677 - symbol:NSE_0677 "DNA-directed RNA pol... 166 4.5e-27 6
TAIR|locus:2015163 - symbol:NRPD1A "nuclear RNA polymeras... 197 6.2e-23 6
TAIR|locus:2061151 - symbol:NRPD1B "nuclear RNA polymeras... 177 2.8e-22 4
UNIPROTKB|P0C504 - symbol:rpoC1 "DNA-directed RNA polymer... 175 8.0e-19 2
UNIPROTKB|P0C505 - symbol:rpoC1 "DNA-directed RNA polymer... 175 8.0e-19 2
UNIPROTKB|P0C506 - symbol:rpoC1 "DNA-directed RNA polymer... 175 8.0e-19 2
UNIPROTKB|Q6ENI3 - symbol:rpoC1 "DNA-directed RNA polymer... 175 8.0e-19 2
RGD|1305574 - symbol:Polr3a "polymerase (RNA) III (DNA di... 216 4.8e-14 1
UNIPROTKB|E1C7P0 - symbol:Gga.54058 "DNA-directed RNA pol... 125 1.2e-06 1
UNIPROTKB|P0C507 - symbol:rpoC2 "DNA-directed RNA polymer... 105 0.00026 3
UNIPROTKB|P0C508 - symbol:rpoC2 "DNA-directed RNA polymer... 105 0.00026 3
UNIPROTKB|P0C509 - symbol:rpoC2 "DNA-directed RNA polymer... 105 0.00026 3
UNIPROTKB|Q6ENI2 - symbol:rpoC2 "DNA-directed RNA polymer... 105 0.00026 3
>TAIR|locus:2076661 [details] [associations]
symbol:NRPA1 "nuclear RNA polymerase A1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA] [GO:0006406
"mRNA export from nucleus" evidence=RCA] [GO:0006606 "protein
import into nucleus" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0009506 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
EMBL:AL049660 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 HSSP:P04050 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 IPI:IPI00546513
PIR:T06754 RefSeq:NP_191325.1 UniGene:At.50286
ProteinModelPortal:Q9SVY0 SMR:Q9SVY0 IntAct:Q9SVY0 STRING:Q9SVY0
PaxDb:Q9SVY0 PRIDE:Q9SVY0 EnsemblPlants:AT3G57660.1 GeneID:824935
KEGG:ath:AT3G57660 TAIR:At3g57660 InParanoid:Q9SVY0
PhylomeDB:Q9SVY0 ProtClustDB:CLSN2684581 Genevestigator:Q9SVY0
Uniprot:Q9SVY0
Length = 1670
Score = 1811 (642.6 bits), Expect = 0., Sum P(3) = 0.
Identities = 365/638 (57%), Positives = 456/638 (71%)
Query: 82 ESSNPEDSDVSNKSSCSMVTPRGNYD-NVRNLKPQEWTSLQFAEAKLALLQFLKIETTKC 140
ES+ P S S++S S+VT + + +++ Q WTSLQFAE L F+++ + C
Sbjct: 154 ESNTPTKSKSSDESCESVVTTDSSEECEDSDVEDQRWTSLQFAEVTAVLKNFMRLSSKSC 213
Query: 141 GNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAP 200
CK NP++ KP FGW+ M M +D+ AN+IRG L ++ S E D S +DA
Sbjct: 214 SRCKGINPKLEKPMFGWVRMRAMKDSDVGANVIRGLKLKKSTSS-VENPDGFDDSGIDA- 271
Query: 201 ETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFE 260
+ G ++T + S V + F++ LLPS+V++I++ LW+NE E
Sbjct: 272 ----LSEVEDGDKETREK-----STEVAAEFEEHNS--KRDLLPSEVRNILKHLWQNEHE 320
Query: 261 LCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQAN 320
CSFI D+ Q G +K +S+FFL VLVPP KFR P+ GGDSVMEHPQTV L+KV+++N
Sbjct: 321 FCSFIGDLWQSG-SEKIDYSMFFLESVLVPPTKFRPPTTGGDSVMEHPQTVGLNKVIESN 379
Query: 321 IYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAA--GQRDMASGICQLLEKKEGLF 378
L NA N+ D +KVI RW NLQ+SVNVLFD K A QRD +SGICQLLEKKEGLF
Sbjct: 380 NILGNACTNKLDQSKVIF-RWRNLQESVNVLFDSKTATVQSQRD-SSGICQLLEKKEGLF 437
Query: 379 RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
RQK+MGKRVN+ACRSVISPDPY+AVN+IGIPP FAL+LTYPERVTPWNV KLR++IING
Sbjct: 438 RQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGP 497
Query: 439 EIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQ 498
+IHPGATHY DK STM+LP +K R +I RKL +SRGA + GK D FEGK V+RH++
Sbjct: 498 DIHPGATHYSDKSSTMKLPSTEKARRAIARKLLSSRGATTELGKTCDINFEGKTVHRHMR 557
Query: 499 DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
DGD+VLVNRQPTLHKPS+MAH VRVLKGEKTLR+HYANCSTYNADFDGDEMNVHFPQDE+
Sbjct: 558 DGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEI 617
Query: 559 SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQXXXXXXXX 618
SRAEAYNIVNANNQY RPSNG+PLR+LIQDHIVS+ LLTK+DTFL++D F Q
Sbjct: 618 SRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVT 677
Query: 619 XXXXXXFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVV 678
F+G+ G++V++S S+ E+L + PAI KP PLWTGKQVITAVLN IT+G PPF V
Sbjct: 678 DMVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVLNQITKGHPPFTV 737
Query: 679 ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMH 716
E+ KLP DFFK R K + K ++ ++ K +
Sbjct: 738 EKATKLPVDFFKCRSREVKPNSGDLTKKKEIDESWKQN 775
Score = 1108 (395.1 bits), Expect = 0., Sum P(3) = 0.
Identities = 212/300 (70%), Positives = 246/300 (82%)
Query: 754 IYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDD 813
I KN+ V GVIDKAQFADYGLVHTV ELYGSN AG LLS SRLFTVFLQ HGFTCGVDD
Sbjct: 783 IRKNEFVCGVIDKAQFADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGFTCGVDD 842
Query: 814 LLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVA 873
L+ILKD + ER L E +G+RV + ++ +IDP ++S IE+ + G++A+A
Sbjct: 843 LIILKDMDEERTKQLQECENVGERVLRKTFGIDVDVQIDPQDMRSRIERILYEDGESALA 902
Query: 874 YFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQ 933
D + + LN+ +S V+N+LLS+GLLK G+N ISLMT SGAKGSKVNFQQISSHLGQ
Sbjct: 903 SLDRSIVNYLNQCSSKGVMNDLLSDGLLKTPGRNCISLMTISGAKGSKVNFQQISSHLGQ 962
Query: 934 QELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDT 993
Q+LEGKRVPRMVSGKTLP FHPWDW+PRAGGFI DRFL+GLRPQEYYFHCMAGREGLVDT
Sbjct: 963 QDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDT 1022
Query: 994 AVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDAL 1053
AVKTSRSGYLQRCL+KNLE LK++YD +VRDADGSI+QF YGEDGVDVH++SFI KF L
Sbjct: 1023 AVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVDVHRSSFIEKFKEL 1082
Score = 424 (154.3 bits), Expect = 0., Sum P(3) = 0.
Identities = 87/136 (63%), Positives = 106/136 (77%)
Query: 1080 NQEMIYKKCS-GQLDASNAYIMELPDALKDNAEKFADKFLSNE------MAKQDFLKLVK 1132
NQ+M+ +KCS L +++YI +LP +LK AEKF + NE + +++ LKLVK
Sbjct: 1085 NQDMVLQKCSEDMLSGASSYISDLPISLKKGAEKFVEAMPMNERIASKFVRQEELLKLVK 1144
Query: 1133 HKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASK 1192
KF SLAQPGEPVG+LA+QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL A+
Sbjct: 1145 SKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAA 1204
Query: 1193 DIKTPVITCPLLVGKT 1208
+IKTP++TCPLL GKT
Sbjct: 1205 NIKTPIMTCPLLKGKT 1220
Score = 419 (152.6 bits), Expect = 2.1e-195, Sum P(3) = 2.1e-195
Identities = 84/200 (42%), Positives = 118/200 (59%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
C +CGQ + CPGH GHI+LV P+Y+P +R CFFCHHF A +VE+ V +
Sbjct: 79 CNSCGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAVSQ 138
Query: 61 LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYD-NVRNLKPQEWTS 119
L+LIIKGDI++AK L ES+ P S S++S S+VT + + +++ Q WTS
Sbjct: 139 LKLIIKGDIVSAKQL------ESNTPTKSKSSDESCESVVTTDSSEECEDSDVEDQRWTS 192
Query: 120 LQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLG 179
LQFAE L F+++ + C CK NP++ KP FGW+ M M +D+ AN+IRG L
Sbjct: 193 LQFAEVTAVLKNFMRLSSKSCSRCKGINPKLEKPMFGWVRMRAMKDSDVGANVIRGLKLK 252
Query: 180 ETFSGGEEEKDLGASSDVDA 199
++ S E D S +DA
Sbjct: 253 KSTSS-VENPDGFDDSGIDA 271
Score = 40 (19.1 bits), Expect = 2.0e-155, Sum P(3) = 2.0e-155
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 177 NLGETFSGGEEEKDLGASSDVDA 199
N+G F GG + LG D A
Sbjct: 56 NVGNPFPGGLYDLKLGPKDDKQA 78
>DICTYBASE|DDB_G0275759 [details] [associations]
symbol:rpa1 "RNA polymerase I, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0275759 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR EMBL:AAFI02000013 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 RefSeq:XP_643519.1 HSSP:P04050
ProteinModelPortal:Q86H36 STRING:Q86H36 PRIDE:Q86H36
EnsemblProtists:DDB0216292 GeneID:8620100 KEGG:ddi:DDB_G0275759
KO:K02999 OMA:CLLNETT ProtClustDB:CLSZ2497252
PANTHER:PTHR19376:SF11 Uniprot:Q86H36
Length = 1615
Score = 1002 (357.8 bits), Expect = 9.9e-204, Sum P(5) = 9.9e-204
Identities = 225/465 (48%), Positives = 303/465 (65%)
Query: 754 IYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
I +N++V G++DK F + YGLVHT ELY + AG+LL+ L R+FT +LQ GFTCGV
Sbjct: 737 IRQNEMVAGILDKGHFGASSYGLVHTCYELYDPDVAGSLLTLLGRMFTNYLQSRGFTCGV 796
Query: 812 DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAA 871
DDLL+ +E+ R L + E G V A + D ++ D K + KA++ +
Sbjct: 797 DDLLMKNKEEKFRVETLKKANEEGYTV---AAKFADLSKYDEQKARDFFSKALQS--ERE 851
Query: 872 VAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHL 931
VA D + LN++TS VI+ L+ G KP KN SLMT SGAKGS VNF Q+S L
Sbjct: 852 VARLDGLLKKGLNQYTSK-VIDTLIPGGQQKPFPKNNFSLMTVSGAKGSVVNFSQVSCLL 910
Query: 932 GQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLV 991
GQQELEGKRVPRMVSGKTLPSF +D + RAGGF++DRFLTG+RPQ+Y+FHCMAGREGL+
Sbjct: 911 GQQELEGKRVPRMVSGKTLPSFQAYDASARAGGFVMDRFLTGVRPQDYFFHCMAGREGLI 970
Query: 992 DTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFD 1051
DTAVKTSRSGYLQRCLIK+LE L + YD +VR++DGS++QF YGED +++ +T +++KF
Sbjct: 971 DTAVKTSRSGYLQRCLIKHLEGLSVQYDNTVRESDGSVIQFNYGEDSLEIGKTPYLTKFP 1030
Query: 1052 ALAAXXXXXXXXX--NKFCDKGSHTFVMGRNQEM--------IYKKCSGQLD---ASNAY 1098
+A + ++ + V+ N+ + + K + D S ++
Sbjct: 1031 IIAENYELFKSQFPMEQLIEQLKNQEVVEYNRSIKTQPELDPVMSKFNPSSDLGCVSESF 1090
Query: 1099 IMELPDALKDNAEKFADKFLSNEMAK---QDFLKLVKHKFVLSLAQPGEPVGLLASQSVG 1155
+ +L ++ N +K K SN K +DF L+ + S+ PGE VGLL +QS+G
Sbjct: 1091 MNQLNHYIESNPQKLI-KTTSNRDGKINEKDFRNLMYLYYSRSMVSPGESVGLLCAQSIG 1149
Query: 1156 EPSTQMTLNTFHLAGRGEMNVTLGIPRLQE-ILTIASKDIKTPVI 1199
EPSTQMTLNTFHLAGRGE NVTLGIPRL+E I+T +K I TP++
Sbjct: 1150 EPSTQMTLNTFHLAGRGEANVTLGIPRLRELIMTATTKPI-TPLM 1193
Score = 714 (256.4 bits), Expect = 9.9e-204, Sum P(5) = 9.9e-204
Identities = 172/402 (42%), Positives = 236/402 (58%)
Query: 227 VPSGFKKQKDLFS-GP-LLPSDVKDIIEKLWENEFELCSFISD-----MQQQGFGKK-AG 278
+P+ F K+ G P +V D ++KL+ENE E+ + + +G KK G
Sbjct: 265 LPTNFSSVKEQTEHGTWFAPWEVLDNMKKLFENEKEILDMLLGHLVPIVTNKGGAKKNVG 324
Query: 279 HSI--------FFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQ 330
F+ V V P ++R P+ EHPQ ++++N + +
Sbjct: 325 RQFTKESNVDSLFMRVFPVTPARYRPPNFVNGRRSEHPQNSHYKGMVKSNKMIRQSIDAG 384
Query: 331 PDNAKVIVARWMNLQQSVNVLFDG-KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNY 389
AK +V +LQ VN ++D K+ + ++A+GI Q+LEKKEGLFR+ +MGKRVNY
Sbjct: 385 EGKAKFLVNSVCDLQMHVNNMYDNSKSNSNTNEVANGIKQILEKKEGLFRKHMMGKRVNY 444
Query: 390 ACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLD 449
A R+VISPD L NE+G+P YFA LT+P+ VT +N +L ++ING E +PGA D
Sbjct: 445 AARTVISPDISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQAVINGPEQYPGANFIED 504
Query: 450 KLSTM-RLPP-NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNR 507
+ + L +++ RI++ + L TS + G + K VYRHL GD VL NR
Sbjct: 505 ENGHLINLSKESQEKRIALSKTLLTSHPHAPR-GVN-------KKVYRHLLSGDYVLANR 556
Query: 508 QPTLHKPSIMAHVVRVL-KGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNI 566
QPTLHKP IM H V+VL K EKTLRMHY+NCSTYNADFDGDEMN+HFPQ ++ AE I
Sbjct: 557 QPTLHKPGIMGHRVKVLGKNEKTLRMHYSNCSTYNADFDGDEMNIHFPQSLLASAEIREI 616
Query: 567 VNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
N QY+ P NG PLR LIQDHI++ LLTK+DT + +F
Sbjct: 617 CANNYQYLVPRNGAPLRGLIQDHILTGVLLTKRDTLFTKADF 658
Score = 188 (71.2 bits), Expect = 9.9e-204, Sum P(5) = 9.9e-204
Identities = 31/75 (41%), Positives = 43/75 (57%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
C TC CPGHFGHI+L +P YNP K CF CHHFK + + + + +
Sbjct: 65 CATCSLDFIECPGHFGHIELAIPCYNPVSFQTIFKLLKNKCFHCHHFKHGKPIINQFIEE 124
Query: 61 LELIIKGDIIAAKSL 75
L L+ KGD++ A++L
Sbjct: 125 LTLLFKGDVVKARNL 139
Score = 117 (46.2 bits), Expect = 9.9e-204, Sum P(5) = 9.9e-204
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 647 PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 692
P I KP PLW+GKQ+I+A LN +T GR P +E K+P + T+
Sbjct: 680 PCILKPVPLWSGKQLISAALNQLTIGRAPLNLEAPSKIPTKMWGTK 725
Score = 58 (25.5 bits), Expect = 7.8e-92, Sum P(5) = 7.8e-92
Identities = 26/127 (20%), Positives = 58/127 (45%)
Query: 818 KDKERERKNHLHGSEEIGKRV----HLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVA 873
K+K+++ N+ G EE ++ EA E +D +++D + ++ D ++
Sbjct: 1356 KNKKKQNVNYEDGEEEAEEKDSDEGESEAEESDDKSDVDSDSDEISNSRSSNSFSDESIE 1415
Query: 874 YFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQIS--SHL 931
+ K+T ++ + S ++L G+++ ++ L + G VN +Q+ +H
Sbjct: 1416 FDQKKLTFTISVASDSK---KVLMLGIVETEASKFV-LKSCKGITRCFVNEKQVGGKTHY 1471
Query: 932 GQQELEG 938
Q EG
Sbjct: 1472 SIQS-EG 1477
Score = 53 (23.7 bits), Expect = 9.9e-204, Sum P(5) = 9.9e-204
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 140 CGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLG 192
CGNC A +PR+ + MP D A L FS +E+ + G
Sbjct: 227 CGNCGAYSPRLRNGDASKSKLFIMPLHDKYATKNSAIKLPTNFSSVKEQTEHG 279
>CGD|CAL0001661 [details] [associations]
symbol:RPA190 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 CGD:CAL0001661
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AACQ01000244
EMBL:AACQ01000240 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 RefSeq:XP_710723.1 RefSeq:XP_710761.1
ProteinModelPortal:Q59LW3 STRING:Q59LW3 GeneID:3647643
GeneID:3647677 KEGG:cal:CaO19.1839 KEGG:cal:CaO19.9397
Uniprot:Q59LW3
Length = 1665
Score = 863 (308.9 bits), Expect = 1.4e-196, Sum P(4) = 1.4e-196
Identities = 202/467 (43%), Positives = 275/467 (58%)
Query: 242 LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
+L ++V++I+ L+ E + + + +G +FF VLVPP +FRLPSK G
Sbjct: 300 VLSTEVRNILRSLFHKEQAILQKVFHSRPYQHDPISG-DLFFKQSVLVPPTRFRLPSKLG 358
Query: 302 DSVMEHPQTVLLSKVLQANIYL-------ANAYVNQ--PDNAKVIVARWMN----LQQSV 348
D + E+ Q LLS +++ ++ + N Y + ++ K+I R MN LQ V
Sbjct: 359 DEIHENAQNELLSNIIKTSVLIRDLNERITNMYKEKISGEDKKIIFNRLMNAFVTLQNDV 418
Query: 349 NVLFDG---KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNE 405
N D +NA + GI Q LEKKEGLFR+ +MGKRVNYA RSVISPDP L NE
Sbjct: 419 NAFIDSTKNQNAPAGKIPNPGIKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNLETNE 478
Query: 406 IGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM--RLPPNKKMR 463
IG+PP FA +LTYPE VT +N +LR ++ING + PGA ++ ++ + + R
Sbjct: 479 IGVPPVFAKKLTYPEPVTSYNASELRQAVINGPDTWPGAIQVQNEDGSLISLIGMTLEQR 538
Query: 464 ISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRV 523
+I +L T G N GK VYRH+++ DVV++NRQPTLHK S+M H VRV
Sbjct: 539 KAIANQLLTPNGG---------NSVVGKKVYRHIKNNDVVIMNRQPTLHKASMMGHKVRV 589
Query: 524 LKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLR 583
L GEKTLR+HYAN YNADFDGDEMN+HFPQ+E +RAEA N+ N +NQY+ P++G PLR
Sbjct: 590 LPGEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALNLANTDNQYLTPTSGSPLR 649
Query: 584 SLIQDHIVSAALLTKKDTFLNRDEFCQXXXXXXXXXXXXXXFTGKPGQRVLISRSEQEVL 643
LIQDHI + LT KDTF NR+ + Q +P S+ ++
Sbjct: 650 GLIQDHISAGVWLTNKDTFFNRETYQQLIYGCI-----------RPEDG---HTSKNRIV 695
Query: 644 PLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV-VERGGKLPQDFF 689
+ PAI+KPE LWTGKQVIT VL +I P V + K+ D++
Sbjct: 696 TVPPAIYKPEMLWTGKQVITTVLLNIKPDNVPGVNLISKNKIKSDYW 742
Score = 706 (253.6 bits), Expect = 1.4e-196, Sum P(4) = 1.4e-196
Identities = 146/300 (48%), Positives = 201/300 (67%)
Query: 754 IYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
I+KN +L+ G++DK+Q+ + +G+VH++ E+YG AG LS L RLFT ++ M FTCG
Sbjct: 752 IFKNGELLSGILDKSQYGASQFGIVHSLHEVYGPTVAGKALSVLGRLFTNYIMMTAFTCG 811
Query: 811 VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
+DDL + + RK+ L S +IG+ E L++ + + +L +E+ +R D
Sbjct: 812 MDDLRLTDEGNTWRKDILKQSVDIGRVAATEVTNLDEDTKNNNKELLRRLEEILRD--DN 869
Query: 871 AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
+ D S++N TS V+++ + +G +K N + M SGAKGS VN QI
Sbjct: 870 KLGILDALTQSKVNAITSQ-VVSKCVPDGTMKRFPYNSMQAMALSGAKGSNVNVSQIMCL 928
Query: 931 LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
LGQQ LEG+RVP MVSGKTLPSF P++ RAGG+I RF +G+RPQEYYFHCMAGREGL
Sbjct: 929 LGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKQRFYSGIRPQEYYFHCMAGREGL 988
Query: 991 VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKF 1050
+DTAVKTSRSGYLQRCL K LE + +SYD SVRDADG+++QF YG D VD + S +++F
Sbjct: 989 IDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVRDADGTLIQFLYGGDAVDTTKQSHMNQF 1048
Score = 292 (107.8 bits), Expect = 5.6e-127, Sum P(4) = 5.6e-127
Identities = 109/376 (28%), Positives = 163/376 (43%)
Query: 124 EAKLALLQFLK--IETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGET 181
E K + +F K + KC NC +P K F I N + I N ++G +
Sbjct: 208 ERKATIHEFYKRLLSRPKCTNCGMYSPGFRKDGFTKIFENSLTDKQITNNRVKGLQRPDM 267
Query: 182 F-----SGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRH--QKGSGAVPSGFKK- 233
+G GA+SD+ + + T+ R K + F
Sbjct: 268 IKKNAGNGNGNSSSTGAASDLPNIKHKGGSKYVLSTEVRNILRSLFHKEQAILQKVFHSR 327
Query: 234 --QKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPP 291
Q D SG L K + + F L S + D + + +I V L+
Sbjct: 328 PYQHDPISGDLF---FKQSV-LVPPTRFRLPSKLGDEIHENAQNELLSNIIKTSV-LIRD 382
Query: 292 IKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVL 351
+ R+ + + + + ++ ++++ NA+V LQ VN
Sbjct: 383 LNERITNMYKEKISGEDKKIIFNRLM-------NAFVT--------------LQNDVNAF 421
Query: 352 FDG---KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGI 408
D +NA + GI Q LEKKEGLFR+ +MGKRVNYA RSVISPDP L NEIG+
Sbjct: 422 IDSTKNQNAPAGKIPNPGIKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNLETNEIGV 481
Query: 409 PPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM--RLPPNKKMRISI 466
PP FA +LTYPE VT +N +LR ++ING + PGA ++ ++ + + R +I
Sbjct: 482 PPVFAKKLTYPEPVTSYNASELRQAVINGPDTWPGAIQVQNEDGSLISLIGMTLEQRKAI 541
Query: 467 GRKLDTSRGAIVQPGK 482
+L T G GK
Sbjct: 542 ANQLLTPNGGNSVVGK 557
Score = 259 (96.2 bits), Expect = 1.4e-196, Sum P(4) = 1.4e-196
Identities = 52/109 (47%), Positives = 74/109 (67%)
Query: 1096 NAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVG 1155
+ Y+ + P + E+ + ++ ++ F L++ K++ SL PGE VG++ASQS+G
Sbjct: 1127 DTYVSKNPTIFAQSKEEAKS---TGKITEKKFRALMQLKYMRSLINPGEAVGIIASQSIG 1183
Query: 1156 EPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
EPSTQMTLNTFH AG G NVTLGIPR++EI+ AS IKTP +T P+L
Sbjct: 1184 EPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASASIKTPQMTLPIL 1232
Score = 171 (65.3 bits), Expect = 1.4e-196, Sum P(4) = 1.4e-196
Identities = 35/96 (36%), Positives = 47/96 (48%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
C TCG + CPGH GHI+L VPVYNP + C +CH FK ++ EV K
Sbjct: 62 CTTCGLDEKFCPGHLGHIELPVPVYNPMFFNQLYIFLRSACLYCHKFKLNQLEVHNFECK 121
Query: 61 LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSS 96
L LI G ++ LD + S + DV + +
Sbjct: 122 LHLIQYGLLLECVELDNIMAKSSKSSSVIDVDGEDN 157
Score = 39 (18.8 bits), Expect = 2.0e-173, Sum P(4) = 2.0e-173
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 1152 QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRL 1183
+ + PS ++ + G G +V +PRL
Sbjct: 1634 EELESPSAKIVMGKLSNVGTGSFDVFAQMPRL 1665
Score = 38 (18.4 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 183 SGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRH 220
S + E+D A D+D P + + Q H
Sbjct: 1416 SDSDNEEDADADVDMDKPSKSELSRSAKDRQSEVIASH 1453
Score = 37 (18.1 bits), Expect = 1.7e-182, Sum P(4) = 1.7e-182
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 177 NLGETFSGGEEEKDLGA 193
NLG +GG + LGA
Sbjct: 40 NLGHPINGGLYDLSLGA 56
>POMBASE|SPBC4C3.05c [details] [associations]
symbol:nuc1 "DNA-directed RNA polymerase I complex large
subunit Nuc1" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IGI] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISO] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0007000 "nucleolus organization" evidence=IMP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 PomBase:SPBC4C3.05c
GO:GO:0005829 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006406
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0034503 GO:GO:0006360
GO:GO:0007000 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999
OMA:CLLNETT PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 EMBL:X14783
EMBL:M37411 PIR:JS0080 RefSeq:NP_596300.1 ProteinModelPortal:P15398
STRING:P15398 EnsemblFungi:SPBC4C3.05c.1 GeneID:2540873
KEGG:spo:SPBC4C3.05c OrthoDB:EOG432464 NextBio:20801989
Uniprot:P15398
Length = 1689
Score = 774 (277.5 bits), Expect = 9.7e-189, Sum P(4) = 9.7e-189
Identities = 166/363 (45%), Positives = 235/363 (64%)
Query: 335 KVIVARWMNLQQSVNVLFDGK---NAAGQ-RDMASGICQLLEKKEGLFRQKLMGKRVNYA 390
++++ ++ LQ VN L D ++ GQ R + GI Q+LEKKEGLFR+ +MGKRVNYA
Sbjct: 428 ELLINAFVQLQHDVNSLIDSNRNPSSGGQSRTVPPGIKQILEKKEGLFRKHMMGKRVNYA 487
Query: 391 CRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDK 450
RSVISPDP + NEIG+PP FA +LTYPE VT +N ++R+++ING PGA+H ++
Sbjct: 488 ARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRNAVINGPHKWPGASHIQNE 547
Query: 451 LSTM--RLPPNKKMRISIGRKLDTSRGAIVQ-PGKDSDNEFEGKMVYRHLQDGDVVLVNR 507
T+ +P + R ++ +L T + ++ P S K VYRH+++GD++++NR
Sbjct: 548 DGTLISLMPLTIEQRTALANQLLTPQSNLISSPYSYSRLINTNKKVYRHVRNGDMLILNR 607
Query: 508 QPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIV 567
QPTLHKPS+MAH R+L GEKT+RMHYANC++YNADFDGDEMN+HFPQ +R+EA I
Sbjct: 608 QPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFDGDEMNMHFPQSTNARSEAQFIA 667
Query: 568 NANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQXXXXXXXXXXXXXXFTG 627
N ++QY+ P++GDPLR LIQDH+V LT KDTF RDE+ Q
Sbjct: 668 NTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQLLFQAL----------- 716
Query: 628 KPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRG-RPPFVVERGGKLPQ 686
KP + + R + LP PAI +P WTGKQ+I++VL ++ RP ++ K+P
Sbjct: 717 KPDETGMYGRIK--TLP--PAIQRPGIYWTGKQIISSVLLNLKPSDRPGLNLKSKAKVPG 772
Query: 687 DFF 689
++
Sbjct: 773 KYW 775
Score = 739 (265.2 bits), Expect = 9.7e-189, Sum P(4) = 9.7e-189
Identities = 159/298 (53%), Positives = 206/298 (69%)
Query: 758 DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
+L+ G++DK+ F + +GLVH+V ELYG + AG LLS LSRLFT + QM GFTC +DDL
Sbjct: 790 ELLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLLSVLSRLFTAYAQMRGFTCRMDDLR 849
Query: 816 ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID-PIKL-KSEIEKAMRGGGDAAVA 873
+ + + R+ L E GK LEA G D PI L + +E+ R D +
Sbjct: 850 LDEQGDNWRRQLL----ENGKSFGLEAASEYVGLSTDSPIALLNANLEEVYRD--DEKLQ 903
Query: 874 YFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQ 933
D M ++N TSS +IN+ + +GLL N + MT SGAKGS VN QIS LGQ
Sbjct: 904 GLDAAMKGKMNGLTSS-IINKCIPDGLLTKFPYNHMQTMTVSGAKGSNVNVSQISCLLGQ 962
Query: 934 QELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDT 993
QELEG+RVP MVSGK+LPSF P++ + ++GGFI RFLTG+ PQEYYFHCMAGREGL+DT
Sbjct: 963 QELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIASRFLTGIAPQEYYFHCMAGREGLIDT 1022
Query: 994 AVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFD 1051
AVKTSRSGYLQRCL+K+LE L + YD++VRD+DGSIVQF YGED +DV + +++F+
Sbjct: 1023 AVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDSDGSIVQFHYGEDSLDVTKQKHLTQFE 1080
Score = 250 (93.1 bits), Expect = 9.7e-189, Sum P(4) = 9.7e-189
Identities = 58/111 (52%), Positives = 71/111 (63%)
Query: 1094 ASNAYIMELPDAL-KDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQ 1152
A + Y + PD L E D L NE F L++ ++ SL PGE VG+LASQ
Sbjct: 1144 AVDEYTQKNPDKLIASKKESKLDDSLLNE---SKFKALMQLRYQQSLVDPGESVGVLASQ 1200
Query: 1153 SVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
S+GEPSTQMTLNTFH AG G NVTLGIPRL+EI+ AS +I+TP +T L
Sbjct: 1201 SIGEPSTQMTLNTFHFAGFGAKNVTLGIPRLREIIMTASANIQTPTMTLRL 1251
Score = 239 (89.2 bits), Expect = 9.7e-189, Sum P(4) = 9.7e-189
Identities = 93/355 (26%), Positives = 158/355 (44%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
C TC + CPGHFGHI L +P Y+P + C +CHHFK S+ +V +
Sbjct: 63 CATCHLDERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCR 122
Query: 61 LELIIKG-----DIIAAKSLDLDL-------PSES-SNPEDSDVSN----KSSCSMVTPR 103
L+L+ G +++ SL + P E S+ EDS + + K + +++ R
Sbjct: 123 LKLLDYGLLNESEMVENVSLTEAIIKNSNGTPLEDGSDSEDSGLGHDDIAKDAATLMRIR 182
Query: 104 GNY------DNVRNLK-PQEWTSLQFAEAKLALLQFLK-IETTK-CGNCKAKNPRISKPT 154
+ D+ +N + T+L E K + F I + K C NC++ +P K
Sbjct: 183 DEFVAKSIADSRQNAHIDAQLTTLLLHERKKVVRAFYHAISSRKQCDNCQSFSPNFRKEG 242
Query: 155 FGWIHMNGMPHADIR----ANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFP 210
F I + +++ IR L +T + +D G D D+ G
Sbjct: 243 FAKIFEIPLSGKNLQFMEQTGKIRSDVLRDTSK--KHHEDEGYDGDSDSSNESEVEGIDL 300
Query: 211 GTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQ 270
+D ++ K + G K + ++V++ + +L+ E + +S +
Sbjct: 301 FEEDPNPLKN-KSKSPIAHGAKY--------MTSTEVRNHLRRLFVKENVV---LSRLYA 348
Query: 271 QGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN 325
GK A +FFL + VPP +FR SK GD V E+ Q LL+++LQ++I +A+
Sbjct: 349 HKRGKPASADMFFLQNIAVPPTRFRPASKMGDEVHENIQNELLTRILQSSIQIAS 403
>UNIPROTKB|G4NBX7 [details] [associations]
symbol:MGG_01158 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
EMBL:CM001235 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0043581 GO:GO:0003899
KO:K02999 PANTHER:PTHR19376:SF11 RefSeq:XP_003717763.1
ProteinModelPortal:G4NBX7 EnsemblFungi:MGG_01158T0 GeneID:2675173
KEGG:mgr:MGG_01158 Uniprot:G4NBX7
Length = 1719
Score = 797 (285.6 bits), Expect = 7.4e-181, Sum P(4) = 7.4e-181
Identities = 193/467 (41%), Positives = 266/467 (56%)
Query: 222 KGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCS-FISDMQQQGFGKKAGHS 280
K SGA PS Q+ L + +V + ++ L+E E E+ S F + K
Sbjct: 319 KKSGAAPS----QRYLSA-----REVLERLDLLFEKEQEVLSLFYNSKPSHKSTKHINAG 369
Query: 281 IFFLGVVLVPPIKFRLPSKGGDS-VMEHPQTVLLSKVLQANIYLANAY--VNQPDN---- 333
+FF+ +LVPP +FR ++ GDS + E Q L +L+A+ L + + P +
Sbjct: 370 LFFVQTLLVPPNRFRPEARTGDSQINEAQQNSLYKAILKASTKLTQIFRDLQNPTSLLSQ 429
Query: 334 -----AKVIVARWMNLQQSVNVLFDGKNA----AGQRDMASGICQLLEKKEGLFRQKLMG 384
++ W LQ VN L D + A + + GI Q LEKKEGLFR+ +MG
Sbjct: 430 RHGKDTTILHEAWTELQDCVNTLIDNTKSPTQGAAAKALEEGIKQKLEKKEGLFRKNMMG 489
Query: 385 KRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGA 444
KRVNYA RSVISPDP + NEIG+PP FA +LTYPE VT N ++ ++ING + PGA
Sbjct: 490 KRVNYAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFRDMQQAVINGPDKWPGA 549
Query: 445 THYLDKLSTMRLPPNKKM--RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDV 502
++ + NK R S+ +L + P ++ K V+RH+ +GDV
Sbjct: 550 AAIENENGQIVNLRNKSQEERSSLANQL-------LAPTSNNSGNMRNKKVHRHISNGDV 602
Query: 503 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
VL+NRQPTLHKPSIM H VRVL GEKT+RMHYANC+TYNADFDGDEMN+HFPQ+EV+R E
Sbjct: 603 VLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPQNEVARTE 662
Query: 563 AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQXXXXXXXXXXXX 622
A + + ++QY+ + G PLR LIQDH+ + L KDT+L+R + +
Sbjct: 663 ALQLADTDHQYISGTQGKPLRGLIQDHLSVSVALCNKDTYLDRSAYHELVYNAL------ 716
Query: 623 XXFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
+P ++ R E++P PAI KP+ WTGKQVIT VL +I
Sbjct: 717 -----RPESGHIL-RERIELVP--PAIIKPKARWTGKQVITTVLRNI 755
Score = 716 (257.1 bits), Expect = 7.4e-181, Sum P(4) = 7.4e-181
Identities = 157/301 (52%), Positives = 198/301 (65%)
Query: 758 DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
+ + G++DKAQ + GLVH V E+YG AG LLSA+ RL T +L M FTCG+DDL
Sbjct: 791 EFISGILDKAQLGPSSGGLVHAVHEVYGPAIAGKLLSAMGRLLTRYLNMRAFTCGMDDLK 850
Query: 816 ILKDKERERKN------HLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGD 869
+ + E +R+N HL G + K V +L+ A DP +L +E+ MR D
Sbjct: 851 LTPEGEADRRNIIDSRAHLVGLQVAAKYV---SLDQHQPANDDP-ELLRRLEEVMRD--D 904
Query: 870 AAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISS 929
D M S +KH S + L +GL K KN + MT SGAKG +VN IS
Sbjct: 905 TKQEGLDGVMNSG-SKHLSQDITTACLPKGLEKQFPKNQMQAMTISGAKGGQVNANLISC 963
Query: 930 HLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREG 989
+LGQQ LEG+RVP MVSGK+LP F P++ RAGG+I++RFLTG+RPQEYYFH MAGREG
Sbjct: 964 NLGQQVLEGRRVPLMVSGKSLPCFKPFETDIRAGGYIVNRFLTGIRPQEYYFHHMAGREG 1023
Query: 990 LVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISK 1049
L+DTAVKTSRSGYLQRCLIK +E L+I YD SVRDADGS+VQF YGEDG+DV + ++
Sbjct: 1024 LIDTAVKTSRSGYLQRCLIKGMEGLEIGYDNSVRDADGSLVQFLYGEDGLDVTKQKYLKD 1083
Query: 1050 F 1050
F
Sbjct: 1084 F 1084
Score = 254 (94.5 bits), Expect = 7.4e-181, Sum P(4) = 7.4e-181
Identities = 56/113 (49%), Positives = 75/113 (66%)
Query: 1093 DASNAYIMELPDAL-KDNAEKFADKFLSNE----MAKQDFLKLVKHKFVLSLAQPGEPVG 1147
DA ++Y+ E PDAL K+ +K + + + ++ K++ K++ SL PGE VG
Sbjct: 1157 DAMSSYVKENPDALIKEKDDKLRNSGPQSSSIVRLNRKAAEKVLSAKYMRSLVHPGEAVG 1216
Query: 1148 LLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
++A QSVGEPSTQMTLNTFHLAG NVTLGIPRL+E+L AS I TP +T
Sbjct: 1217 IVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLRELLMTASSKISTPSMT 1269
Score = 153 (58.9 bits), Expect = 7.4e-181, Sum P(4) = 7.4e-181
Identities = 42/130 (32%), Positives = 55/130 (42%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
C TC CPGH GHI+L VPVY+P + C +CH F+ RR++ + +
Sbjct: 62 CATCNLGPSACPGHPGHIELPVPVYHPVFMDQVLRLLRSQCAYCHRFRMRRRDINRYICL 121
Query: 61 LELIIKGDIIAAKSLDL-----DLPSESSNP-----EDSDVSNKSSCSMVTPRGNYDNVR 110
L+ G + AK LDL D SE P E D + V R VR
Sbjct: 122 FRLLQYGLLAEAKRLDLIGDSLDGVSEGDTPKGGESETEDAQGGKTTEDVVIRKRNAYVR 181
Query: 111 NLKPQEWTSL 120
+ Q SL
Sbjct: 182 QVLQQHQISL 191
Score = 45 (20.9 bits), Expect = 1.7e-169, Sum P(4) = 1.7e-169
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 76 DLDLPSESSNPEDS 89
D DLPSE S+ E+S
Sbjct: 285 DADLPSEESSGEES 298
Score = 39 (18.8 bits), Expect = 7.3e-169, Sum P(4) = 7.3e-169
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 167 DIRANLIRGCNLGETFSGGEEEKD 190
D+ + + G + G+T GGE E +
Sbjct: 137 DLIGDSLDGVSEGDTPKGGESETE 160
Score = 38 (18.4 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 538 STYNADFDGDE-MNVHFPQDEVSRAEA 563
S+ N GD+ ++H D+V++A+A
Sbjct: 1455 SSKNVTAGGDDDPHMHMELDDVAQAKA 1481
>SGD|S000005868 [details] [associations]
symbol:RPA190 "RNA polymerase I largest subunit A190"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IMP;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IGI;IMP] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 SGD:S000005868 EMBL:BK006948 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:X95720 GO:GO:0005736 GO:GO:0003899 GO:GO:0042790
eggNOG:COG0086 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
HOGENOM:HOG000205401 GeneTree:ENSGT00550000074861 OrthoDB:EOG432464
EMBL:J03530 EMBL:Z75249 PIR:S67250 RefSeq:NP_014986.3
RefSeq:NP_620389.3 ProteinModelPortal:P10964 SMR:P10964
DIP:DIP-999N IntAct:P10964 MINT:MINT-613626 STRING:P10964
PaxDb:P10964 PeptideAtlas:P10964 EnsemblFungi:YOR341W GeneID:854519
GeneID:854523 KEGG:sce:YOR341W KEGG:sce:YOR343W-B CYGD:YOR341w
NextBio:976888 Genevestigator:P10964 GermOnline:YOR341W
Uniprot:P10964
Length = 1664
Score = 873 (312.4 bits), Expect = 3.2e-180, Sum P(3) = 3.2e-180
Identities = 217/566 (38%), Positives = 314/566 (55%)
Query: 124 EAKLALLQFLK--IETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGET 181
E K + +F K + KC NC +P+ K F I + I N ++G +
Sbjct: 215 ERKKLVHEFHKKLLSRGKCDNCGMFSPKFRKDGFTKIFETALNEKQITNNRVKGFIRQDM 274
Query: 182 FSGGEEEKDLGASSDVDAPETHSFN-GTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSG 240
++ K L S++ A + SF+ G P T R + GS +
Sbjct: 275 IKKQKQAKKLDGSNEASANDEESFDVGRNPTT------RPKTGSTYI------------- 315
Query: 241 PLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKG 300
L ++VK+I++ ++ E + ++ + K FF+ V++VPP +FRLPSK
Sbjct: 316 --LSTEVKNILDTVFRKEQCVLQYVFHSRPNLSRKLVKADSFFMDVLVVPPTRFRLPSKL 373
Query: 301 GDSVMEHPQTVLLSKVLQANIYLANAYVN----QPDNA-----KVIVARWMN----LQQS 347
G+ V E+ Q LLSKVL ++ + + + Q D +VI +R MN +Q
Sbjct: 374 GEEVHENSQNQLLSKVLTTSLLIRDLNDDLSKLQKDKVSLEDRRVIFSRLMNAFVTIQND 433
Query: 348 VNVLFDGKNAAGQRD---MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVN 404
VN D A G+ G+ Q LEKKEGLFR+ +MGKRVNYA RSVISPDP + N
Sbjct: 434 VNAFIDSTKAQGRTSGKVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETN 493
Query: 405 EIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRI 464
EIG+PP FA++LTYPE VT +N+ +LR ++ING + PGAT ++ ++ + +
Sbjct: 494 EIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQNEDGSLV----SLIGM 549
Query: 465 SIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVL 524
S+ ++ + ++ P + K VYRH+++ DVVL+NRQPTLHK S+M H VRVL
Sbjct: 550 SVEQRKALAN-QLLTPSSNVSTHTLNKKVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVL 608
Query: 525 KGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRS 584
EKTLR+HYAN YNADFDGDEMN+HFPQ+E +RAEA N+ N ++QY+ P++G P+R
Sbjct: 609 PNEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALNLANTDSQYLTPTSGSPVRG 668
Query: 585 LIQDHIVSAALLTKKDTFLNRDEFCQXXXXXXXXXXXXXXFTGKPGQRVLISRSEQEVLP 644
LIQDHI + LT KD+F R+++ Q + G +RS+ LP
Sbjct: 669 LIQDHISAGVWLTSKDSFFTREQYQQYIYGC---------IRPEDGHT---TRSKIVTLP 716
Query: 645 LLPAIWKPEPLWTGKQVITAVLNHIT 670
P I+KP PLWTGKQ+IT VL ++T
Sbjct: 717 --PTIFKPYPLWTGKQIITTVLLNVT 740
Score = 678 (243.7 bits), Expect = 3.2e-180, Sum P(3) = 3.2e-180
Identities = 136/301 (45%), Positives = 198/301 (65%)
Query: 754 IYKND-LVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
++K+ L+ G++DK+Q+ + YG+VH++ E+YG A +LS L RLFT ++ FTCG
Sbjct: 770 LFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSVLGRLFTNYITATAFTCG 829
Query: 811 VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
+DDL + + + R + L S + G+ E L+ D +L +++ +R +
Sbjct: 830 MDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPADDPELLKRLQEILRDNNKS 889
Query: 871 AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
+ D +S++N TS V+++ + +G +K N + M SGAKGS VN QI
Sbjct: 890 GI--LDAVTSSKVNAITSQ-VVSKCVPDGTMKKFPCNSMQAMALSGAKGSNVNVSQIMCL 946
Query: 931 LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
LGQQ LEG+RVP MVSGKTLPSF P++ AGG++ RF +G++PQEYYFHCMAGREGL
Sbjct: 947 LGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGIKPQEYYFHCMAGREGL 1006
Query: 991 VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKF 1050
+DTAVKTSRSGYLQRCL K LE + +SYD S+RDADG++VQF YG D +D+ + S +++F
Sbjct: 1007 IDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMYGGDAIDITKESHMTQF 1066
Query: 1051 D 1051
+
Sbjct: 1067 E 1067
Score = 269 (99.8 bits), Expect = 3.2e-180, Sum P(3) = 3.2e-180
Identities = 58/111 (52%), Positives = 77/111 (69%)
Query: 1098 YIMELPDALKDNAEKFADK----FLSNE-MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQ 1152
Y+ + + +D E F DK F S++ + ++ F L++ K++ SL PGE VG++ASQ
Sbjct: 1132 YLGSVSENFQDKLESFLDKNSKLFKSSDGVNEKKFRALMQLKYMRSLINPGEAVGIIASQ 1191
Query: 1153 SVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
SVGEPSTQMTLNTFH AG G NVTLGIPRL+EI+ AS IKTP +T P+
Sbjct: 1192 SVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASAAIKTPQMTLPI 1242
Score = 236 (88.1 bits), Expect = 1.4e-105, Sum P(3) = 1.4e-105
Identities = 92/345 (26%), Positives = 148/345 (42%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
C TCG + CPGH GHI+L VP YNP + C FCHHF+ EV + K
Sbjct: 62 CSTCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACK 121
Query: 61 LELIIKGDIIAAKSLD-LDLPSESSNPEDSDVSNKSSCSMVTPRGNYDN--VRNLKPQEW 117
L L+ G I + LD + L S +S+ D + + + + G+ + + + E
Sbjct: 122 LRLLQYGLIDESYKLDEITLGSLNSSMYTDDEAIEDNEDEMDGEGSKQSKDISSTLLNEL 181
Query: 118 TSLQFAEAKLALLQFLKI-ETTKCGNCKAK-NPRISKPTFGWIHMNGMPHADIRANLIRG 175
S + +A+ + L TT+ G+ A N K + H + L RG
Sbjct: 182 KSKRSEYVDMAIAKALSDGRTTERGSFTATVNDERKK----------LVHEFHKKLLSRG 231
Query: 176 -CNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPG--TQDTAARRHQK----GSGAVP 228
C+ FS + + E N G QD ++ Q GS
Sbjct: 232 KCDNCGMFSPKFRKDGFTKIFETALNEKQITNNRVKGFIRQDMIKKQKQAKKLDGSNEAS 291
Query: 229 SGFKKQKDLFSGP----------LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAG 278
+ ++ D+ P +L ++VK+I++ ++ E + ++ + K
Sbjct: 292 ANDEESFDVGRNPTTRPKTGSTYILSTEVKNILDTVFRKEQCVLQYVFHSRPNLSRKLVK 351
Query: 279 HSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL 323
FF+ V++VPP +FRLPSK G+ V E+ Q LLSKVL ++ +
Sbjct: 352 ADSFFMDVLVVPPTRFRLPSKLGEEVHENSQNQLLSKVLTTSLLI 396
Score = 39 (18.8 bits), Expect = 6.2e-15, Sum P(4) = 6.2e-15
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 845 LEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMT---SQLNKHTSSSVINELLSE 898
+++ ++D I L S + +M D A+ + +M S+ +K SS+++NEL S+
Sbjct: 130 IDESYKLDEITLGS-LNSSMYTD-DEAIEDNEDEMDGEGSKQSKDISSTLLNELKSK 184
Score = 38 (18.4 bits), Expect = 3.4e-36, Sum P(3) = 3.4e-36
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 968 DRFLTGLRPQEYYFHCMAGREG 989
D F T + Q+Y + C+ +G
Sbjct: 684 DSFFTREQYQQYIYGCIRPEDG 705
Score = 37 (18.1 bits), Expect = 1.2e-84, Sum P(3) = 1.2e-84
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 177 NLGETFSGGEEEKDLGA 193
NLG SGG + LGA
Sbjct: 40 NLGHPVSGGLYDLALGA 56
>UNIPROTKB|B9ZVN9 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AC009309 PANTHER:PTHR19376:SF11 HGNC:HGNC:17264
HOGENOM:HOG000205401 ChiTaRS:POLR1A EMBL:AC012511 IPI:IPI00916060
ProteinModelPortal:B9ZVN9 STRING:B9ZVN9 Ensembl:ENST00000409681
ArrayExpress:B9ZVN9 Bgee:B9ZVN9 Uniprot:B9ZVN9
Length = 1659
Score = 706 (253.6 bits), Expect = 1.2e-178, Sum P(6) = 1.2e-178
Identities = 146/307 (47%), Positives = 203/307 (66%)
Query: 754 IYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH-GFTCG 810
I + +L+ GV+DKA + YGLVH E+YG T+G +L+ L+RLFT +LQ++ GFT G
Sbjct: 739 IREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLG 798
Query: 811 VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
V+D+L+ + +R+ + S G + AL L + A D ++ K + A G
Sbjct: 799 VEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQ--DAHLGKDQR 856
Query: 871 AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
D+K ++N H S+ + + GL + +N + +M SGAKGS VN QIS
Sbjct: 857 DFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQMMVQSGAKGSTVNTMQISCL 915
Query: 931 LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+ RFLTG++P E++FHCMAGREGL
Sbjct: 916 LGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGL 975
Query: 991 VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS-- 1048
VDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF YGEDG+D+ +T F+
Sbjct: 976 VDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPK 1035
Query: 1049 KFDALAA 1055
+F LA+
Sbjct: 1036 QFPFLAS 1042
Score = 690 (248.0 bits), Expect = 1.2e-178, Sum P(6) = 1.2e-178
Identities = 136/273 (49%), Positives = 181/273 (66%)
Query: 341 WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
W+ LQ VN++FD + D GI Q+LEKKEGLFR+ +MGKRV+YA RSVI PD Y
Sbjct: 391 WIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMY 450
Query: 401 LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL--DKLSTMRLPP 458
+ NEIGIP FA +LTYP+ VTPWNV +LR ++ING +HPGA+ + D T
Sbjct: 451 INTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAV 510
Query: 459 NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-KMVYRHLQDGDVVLVNRQPTLHKPSIM 517
+ R ++ ++L T +P +G K+V RH+++GD++L+NRQPTLH+PSI
Sbjct: 511 DMTQREAVAKQLLTPATGAPKP--------QGTKIVCRHVKNGDILLLNRQPTLHRPSIQ 562
Query: 518 AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
AH R+L EK LR+HYANC YNADFDGDEMN HFPQ E+ RAEAY + + QY+ P
Sbjct: 563 AHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPK 622
Query: 578 NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
+G PL LIQDH+VS A +T + F R+ + +
Sbjct: 623 DGQPLAGLIQDHMVSGASMTTRGCFFTREHYME 655
Score = 280 (103.6 bits), Expect = 1.2e-178, Sum P(6) = 1.2e-178
Identities = 57/110 (51%), Positives = 80/110 (72%)
Query: 1095 SNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSV 1154
S + ++ D ++ A + + +E++ L++ K+ SL +PGE VGLLA+QS+
Sbjct: 1160 SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSI 1219
Query: 1155 GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L
Sbjct: 1220 GEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVL 1269
Score = 130 (50.8 bits), Expect = 1.2e-178, Sum P(6) = 1.2e-178
Identities = 37/112 (33%), Positives = 56/112 (50%)
Query: 208 TFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENE-FELCSFIS 266
TFP A QK S P G ++ + G L P+ ++ + LW+NE F L S
Sbjct: 226 TFPAMVHRTAG--QKDSE--PLGIEEAQIGKRGYLTPTSAREHLSALWKNEGFFLNYLFS 281
Query: 267 DMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQ 318
M G + S+FFL ++VPP ++R S+ GD + + QTV L V++
Sbjct: 282 GMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMK 333
Score = 118 (46.6 bits), Expect = 1.2e-178, Sum P(6) = 1.2e-178
Identities = 37/154 (24%), Positives = 61/154 (39%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
C TC Q C GH GHI+L + VYNP + C CH R + + +
Sbjct: 64 CSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123
Query: 61 LELIIKGDIIAAKSLDLDLPSE-SSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTS 119
L ++ G + A L+ L NP+ S + T +N+ + +
Sbjct: 124 LRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIVQNNLLGSQGAHVKN 183
Query: 120 LQFAEAKL-ALLQFLKIETTKCGNCKAKNPRISK 152
+ +++KL AL + +C +CK + K
Sbjct: 184 VCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRK 217
Score = 79 (32.9 bits), Expect = 1.2e-178, Sum P(6) = 1.2e-178
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 645 LLPAIWKPEPLWTGKQVITAVLNHI 669
L P+I KP PLWTGKQV++ +L +I
Sbjct: 671 LSPSILKPFPLWTGKQVVSTLLINI 695
Score = 43 (20.2 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 18/68 (26%), Positives = 27/68 (39%)
Query: 875 FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV------NFQQIS 928
F M +L K + S+ N + L P+ N + + A +V +F S
Sbjct: 17 FGMYSAEELKKLSVKSITNPRYLDSLGNPSA-NGLYDLALGPADSKEVCSTCVQDFSNCS 75
Query: 929 SHLGQQEL 936
HLG EL
Sbjct: 76 GHLGHIEL 83
Score = 39 (18.8 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 449 DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGK-DSDNEFEGKMVYRHLQDGD 501
+K S R N R + R LD + G+ + D E EG +V ++GD
Sbjct: 1359 NKASAFR---NVNTRRATQRDLDNAGELGRSRGEQEGDEEEEGHIVDAEAEEGD 1409
Score = 38 (18.4 bits), Expect = 3.8e-25, Sum P(3) = 3.8e-25
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 201 ETHSFNGTFPGTQD 214
E+ + NG PGTQ+
Sbjct: 1106 ESENRNGRSPGTQE 1119
>UNIPROTKB|O95602 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase I subunit RPA1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=NAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=TAS] [GO:0006361 "transcription
initiation from RNA polymerase I promoter" evidence=TAS]
[GO:0006362 "transcription elongation from RNA polymerase I
promoter" evidence=TAS] [GO:0006363 "termination of RNA polymerase
I transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CH471053
GO:GO:0005654 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0009303
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 EMBL:U33460 EMBL:AH007280 EMBL:AK302458
EMBL:BC117173 EMBL:BC126303 EMBL:AL117467 IPI:IPI00031960
PIR:T17252 RefSeq:NP_056240.2 UniGene:Hs.531818
ProteinModelPortal:O95602 SMR:O95602 DIP:DIP-27537N IntAct:O95602
MINT:MINT-111492 STRING:O95602 PhosphoSite:O95602
SWISS-2DPAGE:O95602 PaxDb:O95602 PRIDE:O95602
Ensembl:ENST00000263857 GeneID:25885 KEGG:hsa:25885 UCSC:uc002sqs.3
CTD:25885 GeneCards:GC02M086253 H-InvDB:HIX0002233 HGNC:HGNC:17264
HPA:CAB010145 neXtProt:NX_O95602 PharmGKB:PA134891380
HOGENOM:HOG000205401 HOVERGEN:HBG017741 InParanoid:O95602
OrthoDB:EOG41VK23 ChiTaRS:POLR1A GenomeRNAi:25885 NextBio:47304
PMAP-CutDB:O95602 ArrayExpress:O95602 Bgee:O95602 CleanEx:HS_POLR1A
Genevestigator:O95602 GermOnline:ENSG00000068654 Uniprot:O95602
Length = 1720
Score = 706 (253.6 bits), Expect = 1.9e-178, Sum P(6) = 1.9e-178
Identities = 146/307 (47%), Positives = 203/307 (66%)
Query: 754 IYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH-GFTCG 810
I + +L+ GV+DKA + YGLVH E+YG T+G +L+ L+RLFT +LQ++ GFT G
Sbjct: 739 IREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLG 798
Query: 811 VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
V+D+L+ + +R+ + S G + AL L + A D ++ K + A G
Sbjct: 799 VEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQ--DAHLGKDQR 856
Query: 871 AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
D+K ++N H S+ + + GL + +N + +M SGAKGS VN QIS
Sbjct: 857 DFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQMMVQSGAKGSTVNTMQISCL 915
Query: 931 LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+ RFLTG++P E++FHCMAGREGL
Sbjct: 916 LGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGL 975
Query: 991 VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS-- 1048
VDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF YGEDG+D+ +T F+
Sbjct: 976 VDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPK 1035
Query: 1049 KFDALAA 1055
+F LA+
Sbjct: 1036 QFPFLAS 1042
Score = 690 (248.0 bits), Expect = 1.9e-178, Sum P(6) = 1.9e-178
Identities = 136/273 (49%), Positives = 181/273 (66%)
Query: 341 WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
W+ LQ VN++FD + D GI Q+LEKKEGLFR+ +MGKRV+YA RSVI PD Y
Sbjct: 391 WIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMY 450
Query: 401 LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL--DKLSTMRLPP 458
+ NEIGIP FA +LTYP+ VTPWNV +LR ++ING +HPGA+ + D T
Sbjct: 451 INTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAV 510
Query: 459 NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-KMVYRHLQDGDVVLVNRQPTLHKPSIM 517
+ R ++ ++L T +P +G K+V RH+++GD++L+NRQPTLH+PSI
Sbjct: 511 DMTQREAVAKQLLTPATGAPKP--------QGTKIVCRHVKNGDILLLNRQPTLHRPSIQ 562
Query: 518 AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
AH R+L EK LR+HYANC YNADFDGDEMN HFPQ E+ RAEAY + + QY+ P
Sbjct: 563 AHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPK 622
Query: 578 NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
+G PL LIQDH+VS A +T + F R+ + +
Sbjct: 623 DGQPLAGLIQDHMVSGASMTTRGCFFTREHYME 655
Score = 280 (103.6 bits), Expect = 1.9e-178, Sum P(6) = 1.9e-178
Identities = 57/110 (51%), Positives = 80/110 (72%)
Query: 1095 SNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSV 1154
S + ++ D ++ A + + +E++ L++ K+ SL +PGE VGLLA+QS+
Sbjct: 1160 SETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSI 1219
Query: 1155 GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L
Sbjct: 1220 GEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVL 1269
Score = 130 (50.8 bits), Expect = 1.9e-178, Sum P(6) = 1.9e-178
Identities = 37/112 (33%), Positives = 56/112 (50%)
Query: 208 TFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENE-FELCSFIS 266
TFP A QK S P G ++ + G L P+ ++ + LW+NE F L S
Sbjct: 226 TFPAMVHRTAG--QKDSE--PLGIEEAQIGKRGYLTPTSAREHLSALWKNEGFFLNYLFS 281
Query: 267 DMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQ 318
M G + S+FFL ++VPP ++R S+ GD + + QTV L V++
Sbjct: 282 GMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMK 333
Score = 118 (46.6 bits), Expect = 1.9e-178, Sum P(6) = 1.9e-178
Identities = 37/154 (24%), Positives = 61/154 (39%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
C TC Q C GH GHI+L + VYNP + C CH R + + +
Sbjct: 64 CSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123
Query: 61 LELIIKGDIIAAKSLDLDLPSE-SSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTS 119
L ++ G + A L+ L NP+ S + T +N+ + +
Sbjct: 124 LRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIVQNNLLGSQGAHVKN 183
Query: 120 LQFAEAKL-ALLQFLKIETTKCGNCKAKNPRISK 152
+ +++KL AL + +C +CK + K
Sbjct: 184 VCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRK 217
Score = 79 (32.9 bits), Expect = 1.9e-178, Sum P(6) = 1.9e-178
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 645 LLPAIWKPEPLWTGKQVITAVLNHI 669
L P+I KP PLWTGKQV++ +L +I
Sbjct: 671 LSPSILKPFPLWTGKQVVSTLLINI 695
Score = 43 (20.2 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 18/68 (26%), Positives = 27/68 (39%)
Query: 875 FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV------NFQQIS 928
F M +L K + S+ N + L P+ N + + A +V +F S
Sbjct: 17 FGMYSAEELKKLSVKSITNPRYLDSLGNPSA-NGLYDLALGPADSKEVCSTCVQDFSNCS 75
Query: 929 SHLGQQEL 936
HLG EL
Sbjct: 76 GHLGHIEL 83
Score = 39 (18.8 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 449 DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGK-DSDNEFEGKMVYRHLQDGD 501
+K S R N R + R LD + G+ + D E EG +V ++GD
Sbjct: 1359 NKASAFR---NVNTRRATQRDLDNAGELGRSRGEQEGDEEEEGHIVDAEAEEGD 1409
Score = 38 (18.4 bits), Expect = 4.3e-25, Sum P(3) = 4.3e-25
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 201 ETHSFNGTFPGTQD 214
E+ + NG PGTQ+
Sbjct: 1106 ESENRNGRSPGTQE 1119
>UNIPROTKB|G3V7B7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CH473957
GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 UniGene:Rn.24877
Ensembl:ENSRNOT00000013587 Uniprot:G3V7B7
Length = 1716
Score = 717 (257.5 bits), Expect = 8.7e-176, Sum P(6) = 8.7e-176
Identities = 151/307 (49%), Positives = 204/307 (66%)
Query: 754 IYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH-GFTCG 810
I + +L+ GV+DKA + YGLVH E+YG T+G +L+ L+RLFT +LQ++ GFT G
Sbjct: 746 IREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLG 805
Query: 811 VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
V+D+L+ + + R+ + S + G R AL L + A D I+ K + A G
Sbjct: 806 VEDILVKPNADVMRQRIIEESTQCGPRAVRAALNLPEAASCDEIQGKWQ--DAHLGKDQR 863
Query: 871 AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
DMK ++N H S+ + + GL + +N + +M SGAKGS VN QIS
Sbjct: 864 DFNMIDMKFKEEVN-HYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCL 922
Query: 931 LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+ RFLTG+RP E++FHCMAGREGL
Sbjct: 923 LGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGL 982
Query: 991 VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS-- 1048
VDTAVKTSRSGYLQRC+IK+LE L I YD +VRD+DGS+VQF YGEDG+D+ +T F+
Sbjct: 983 VDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPK 1042
Query: 1049 KFDALAA 1055
+F LA+
Sbjct: 1043 QFPFLAS 1049
Score = 682 (245.1 bits), Expect = 8.7e-176, Sum P(6) = 8.7e-176
Identities = 135/273 (49%), Positives = 181/273 (66%)
Query: 341 WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
W+ LQ VN++FD + GI Q+LEKKEGLFR+ +MGKRV+YA RSVI PD Y
Sbjct: 398 WIRLQSHVNIVFDSDMDKLMLEKYPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMY 457
Query: 401 LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL--DKLSTMRLPP 458
+ NEIGIP FA +LTYP+ VTPWNV +LR ++ING +HPGA+ + D T
Sbjct: 458 INTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAV 517
Query: 459 NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-KMVYRHLQDGDVVLVNRQPTLHKPSIM 517
+ R ++ ++L T I +P +G K+V RH+++GD++L+NRQPTLH+PSI
Sbjct: 518 DATQREAVAKQLLTPSTGIPKP--------QGAKVVCRHVKNGDILLLNRQPTLHRPSIQ 569
Query: 518 AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
AH +L EK LR+HYANC YNADFDGDEMN HFPQ E+ RAEAY + + QY+ P
Sbjct: 570 AHRAHILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPK 629
Query: 578 NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
+G PL LIQDH+VS A +T + F R+++ +
Sbjct: 630 DGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 662
Score = 270 (100.1 bits), Expect = 8.7e-176, Sum P(6) = 8.7e-176
Identities = 56/109 (51%), Positives = 77/109 (70%)
Query: 1095 SNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSV 1154
S + ++ D ++ A + +E++ L++ K+ SL PGE VGLLA+QS+
Sbjct: 1167 SETFEKKIDDYSQEWAAQAEKSHNRSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSI 1226
Query: 1155 GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+
Sbjct: 1227 GEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPV 1275
Score = 118 (46.6 bits), Expect = 8.7e-176, Sum P(6) = 8.7e-176
Identities = 39/157 (24%), Positives = 66/157 (42%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
C TC Q C GH GHIDL + VYNP + C CH R + V +
Sbjct: 64 CSTCVQDFNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAIHLLVCQ 123
Query: 61 LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
L+++ G + A L+ L E+S+P ++ + T + +N+ +
Sbjct: 124 LKVLDVGALQAVYELERILSRFLEETSDPSAFEIQEE--LEEYTSKILQNNLLGSQGAHV 181
Query: 118 TSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISK 152
++ + +KL + F K + +C +CK + K
Sbjct: 182 KNVCESRSKL-VAHFWKTHMAAKRCPHCKTGRSVVRK 217
Score = 108 (43.1 bits), Expect = 8.7e-176, Sum P(6) = 8.7e-176
Identities = 30/98 (30%), Positives = 51/98 (52%)
Query: 222 KGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHS 280
+G+ A P G + + G L PS ++ + +W+NE F L S + G S
Sbjct: 244 EGAPAAP-GIDEAQMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPS 302
Query: 281 IFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQ 318
+FFL ++VPP ++R ++ GD + + QTV L V++
Sbjct: 303 MFFLDFIVVPPSRYRPINRLGDQMFTNGQTVNLQAVMK 340
Score = 80 (33.2 bits), Expect = 8.7e-176, Sum P(6) = 8.7e-176
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 647 PAIWKPEPLWTGKQVITAVLNHI 669
PAI KP PLWTGKQV++ +L +I
Sbjct: 680 PAILKPFPLWTGKQVVSTLLINI 702
Score = 40 (19.1 bits), Expect = 2.3e-06, Sum P(4) = 2.3e-06
Identities = 25/113 (22%), Positives = 50/113 (44%)
Query: 344 LQQSVNVL-FDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLA 402
+Q +V L +GK G+ + Q+ + + R+K Y R+ PDP L+
Sbjct: 1103 IQAAVKALNLEGKTQNGRSPETQQMLQMWHELDEQSRRK-------YQKRAAPCPDPSLS 1155
Query: 403 VNEIGIPPYFA-LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM 454
V I +FA + T+ +++ ++ ++ + H + LD+L T+
Sbjct: 1156 VWRPDI--HFASVSETFEKKIDDYS----QEWAAQAEKSHNRSELSLDRLRTL 1202
Score = 37 (18.1 bits), Expect = 2.3e-06, Sum P(4) = 2.3e-06
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 482 KDSDNEFEGKMVYRHLQDGD 501
++ D E EG +V ++GD
Sbjct: 1397 EERDEEEEGNIVDAEAEEGD 1416
>ZFIN|ZDB-GENE-030131-5286 [details] [associations]
symbol:polr1a "polymerase (RNA) I polypeptide A"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 ZFIN:ZDB-GENE-030131-5286
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861 EMBL:AL929267
EMBL:CU694378 IPI:IPI00934858 Ensembl:ENSDART00000114501
ArrayExpress:E7F710 Bgee:E7F710 Uniprot:E7F710
Length = 1710
Score = 716 (257.1 bits), Expect = 2.3e-175, Sum P(6) = 2.3e-175
Identities = 139/274 (50%), Positives = 186/274 (67%)
Query: 337 IVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
+ + W++LQ VN++FD + G+ QLLEKKEGLFR+ +MGKRV+YA RSVI
Sbjct: 393 LYSTWIHLQSLVNIVFDSDMDKLITEKFPGVRQLLEKKEGLFRKHMMGKRVDYAARSVIC 452
Query: 397 PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL--DKLSTM 454
PD Y+ NEIGIP FA +LTYP+ VTPWNV ++R +++NG IHPGAT + D T+
Sbjct: 453 PDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEMRQAVLNGPNIHPGATMVVNEDGSRTI 512
Query: 455 RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKP 514
N+ R ++ ++L T P + K+V RH+++GDV+L+NRQPTLH+P
Sbjct: 513 LSSTNQTQREAVAKQLLT-------PST-GQHRIPMKIVNRHIKNGDVLLLNRQPTLHRP 564
Query: 515 SIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYV 574
SI AH R+L GEK LR+HYANC YNADFDGDEMN HFPQ E+SRAEAY +V+ + QY+
Sbjct: 565 SIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELSRAEAYTLVSTDQQYL 624
Query: 575 RPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
P +G PL LIQDH+VS +T + F RD++
Sbjct: 625 VPKDGKPLAGLIQDHMVSGTSMTIRGCFFTRDQY 658
Score = 651 (234.2 bits), Expect = 2.3e-175, Sum P(6) = 2.3e-175
Identities = 143/298 (47%), Positives = 194/298 (65%)
Query: 754 IYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH-GFTCG 810
I + +L+ GV+DKA + YGLVH ELYG T+G LLS L+RLFT +LQ++ GFT G
Sbjct: 744 IRQGELLMGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYRGFTLG 803
Query: 811 VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
V+D+L+ KD + S G + A L AE + + + A
Sbjct: 804 VEDILV-KDGAK--------SVTCGSKALQAAFNLPASAE--DTEARERWQDAHLNIDQR 852
Query: 871 AVAYFDMKMTSQLNKHTSSSVINEL-LSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISS 929
D+K ++N+ ++ IN++ + GL + +N + +M SGAKGS VN QIS
Sbjct: 853 DFNMVDLKFKEEVNQVNNN--INKVCMPLGLHRSFPENNLQMMVQSGAKGSTVNTMQISC 910
Query: 930 HLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREG 989
LGQ ELEG+R P M SGK+LP F P++ PR+GGF+ RFLTG++P E++FHCMAGREG
Sbjct: 911 LLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGIKPPEFFFHCMAGREG 970
Query: 990 LVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFI 1047
LVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF YGEDG+D+ +T F+
Sbjct: 971 LVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFL 1028
Score = 276 (102.2 bits), Expect = 2.3e-175, Sum P(6) = 2.3e-175
Identities = 55/90 (61%), Positives = 73/90 (81%)
Query: 1119 SNEMAKQDFLK-LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVT 1177
S+E D L+ L++ K+ +L PGE VGL+A+QS+GEPSTQMTLNTFH AGRGEMNVT
Sbjct: 1179 SSETTDADRLRNLLQLKWQRALCDPGEAVGLVAAQSIGEPSTQMTLNTFHFAGRGEMNVT 1238
Query: 1178 LGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
LGIPRL+EIL +AS +IKTP+++ P+++ K
Sbjct: 1239 LGIPRLREILLVASSNIKTPMMSIPVVMNK 1268
Score = 145 (56.1 bits), Expect = 2.3e-175, Sum P(6) = 2.3e-175
Identities = 46/158 (29%), Positives = 67/158 (42%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
C TC Q CPGHFGHI+L +PVYNP + C CH K R + + +
Sbjct: 64 CSTCMQDFSSCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSCHILKCPRAAIHLLLCQ 123
Query: 61 LELIIKGDIIAAKSLD--LDLPSESS-NPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
L+L+ G + ++ L+ ES+ +P ++ + V P R K
Sbjct: 124 LKLLDVGAMKEVFEIENVLNQFLESNPSPPGEEIQETLN-DFVKP---ILETRKDKQHTD 179
Query: 118 TSLQFAEAKLALL-QFLKIET--TKCGNCKAKNPRISK 152
E K +L+ F +I KC NCKA + K
Sbjct: 180 PVKHICEKKSSLITSFWRIHMGPKKCQNCKANRMTVRK 217
Score = 109 (43.4 bits), Expect = 2.3e-175, Sum P(6) = 2.3e-175
Identities = 32/108 (29%), Positives = 49/108 (45%)
Query: 242 LLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKG 300
L PS ++ I KLWE E F L S +FFL +++VPP ++R ++
Sbjct: 260 LTPSVAREHIIKLWETEGFFLKHLFSGFDMDNSDNGFNPEVFFLELLVVPPCRYRPINRL 319
Query: 301 GDSVMEHPQTVLLSKVLQANIYLANAYVNQPDN-AKVIVARWMNLQQS 347
GD + + QTV + VL+ + + D K I L+QS
Sbjct: 320 GDQMFTNGQTVNMQAVLKDGLIIQKLLTLIADEKTKAIEGTQTELEQS 367
Score = 74 (31.1 bits), Expect = 2.3e-175, Sum P(6) = 2.3e-175
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 641 EVLPLLPAIWKPEPLWTGKQVI-TAVLNHITRGRPPFVVERGGKLP 685
++LP P + KP LWTGKQV+ T +LN I P + K+P
Sbjct: 674 KLLP--PTLIKPVLLWTGKQVVSTLLLNVIPENSIPLNLTGKAKIP 717
Score = 40 (19.1 bits), Expect = 6.3e-100, Sum P(5) = 6.3e-100
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 492 MVYRHLQD--GDVVLVNRQPTLHKPSIM 517
+VYR L D G V L+ PTL KP ++
Sbjct: 661 LVYRGLTDKIGRVKLL--PPTLIKPVLL 686
Score = 38 (18.4 bits), Expect = 8.9e-93, Sum P(4) = 8.9e-93
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 137 TTKCGNCKAKNPRISKPTFGW 157
T K G K P + KP W
Sbjct: 667 TDKIGRVKLLPPTLIKPVLLW 687
Score = 37 (18.1 bits), Expect = 1.7e-86, Sum P(5) = 1.7e-86
Identities = 33/142 (23%), Positives = 56/142 (39%)
Query: 767 AQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTC----GVDDL---LILKD 819
A+ A LV T + N T R + H F C G +D I+ D
Sbjct: 1356 AKLAAISLVETRRATVNDNDRDTSDGGADREVNSLNRSHVFRCNDDNGGEDAENERIVDD 1415
Query: 820 KERERKNHLHGSEEIGKR---VHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFD 876
+ E S+ K+ V E+ E E+G++ + ++ E E + + +
Sbjct: 1416 EANEGDADATDSKRKEKQEEEVDYESEEGEEGSDQEQEEVAEEQEASQEVSEEGSTES-Q 1474
Query: 877 MKMTSQLNKHTSS-SV-INELL 896
++ S+ K +S SV IN +L
Sbjct: 1475 QRVNSEQPKGSSQGSVRINSVL 1496
>MGI|MGI:1096397 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009303 "rRNA transcription" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] Reactome:REACT_78136 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 MGI:MGI:1096397 GO:GO:0005654 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086
CleanEx:MM_RPA1 Reactome:REACT_86751 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 CTD:25885 HOGENOM:HOG000205401
HOVERGEN:HBG017741 OrthoDB:EOG41VK23 ChiTaRS:POLR1A EMBL:AF000938
EMBL:BC053744 IPI:IPI00313726 PIR:T13961 RefSeq:NP_033114.3
UniGene:Mm.135581 ProteinModelPortal:O35134 SMR:O35134
STRING:O35134 PhosphoSite:O35134 PaxDb:O35134 PRIDE:O35134
Ensembl:ENSMUST00000055296 GeneID:20019 KEGG:mmu:20019
UCSC:uc009chv.2 GeneTree:ENSGT00550000074861 InParanoid:O35134
NextBio:297531 Bgee:O35134 Genevestigator:O35134
GermOnline:ENSMUSG00000049553 Uniprot:O35134
Length = 1717
Score = 708 (254.3 bits), Expect = 3.0e-175, Sum P(6) = 3.0e-175
Identities = 149/306 (48%), Positives = 204/306 (66%)
Query: 754 IYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH-GFTCG 810
I + +L+ GV+DKA + YGLVH E+YG T+G +L+ L+RLFT +LQ++ GFT G
Sbjct: 746 IREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLG 805
Query: 811 VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
V+D+L+ + + R+ + S + G + AL L + A D I+ K + + D
Sbjct: 806 VEDILVKPNADVVRQRIIEESTQCGPQAVKAALSLPETASCDEIQGKWQDAHLSKDQRDF 865
Query: 871 AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
+ DMK ++N H S+ + + GL + +N + +M SGAKGS VN QIS
Sbjct: 866 NM--IDMKFKEEVN-HYSNEINKACMPLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCL 922
Query: 931 LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+ RFLTG+RP E++FHCMAGREGL
Sbjct: 923 LGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGL 982
Query: 991 VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS-- 1048
VDTAVKTSRSGYLQRC+IK+LE L I YD +VRD+DGS+VQF YGEDG+D+ +T F+
Sbjct: 983 VDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPK 1042
Query: 1049 KFDALA 1054
+F LA
Sbjct: 1043 QFPFLA 1048
Score = 684 (245.8 bits), Expect = 3.0e-175, Sum P(6) = 3.0e-175
Identities = 135/273 (49%), Positives = 182/273 (66%)
Query: 341 WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
W+ LQ VN++FD + + GI Q+LEKKEGLFR+ +MGKRV+YA RSVI PD Y
Sbjct: 398 WIRLQSHVNIVFDSEMDKLMLEKYPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMY 457
Query: 401 LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL--DKLSTMRLPP 458
+ NEIGIP FA +LTYP+ VTPWNV +LR ++ING +HPGA+ + D T
Sbjct: 458 INTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSSV 517
Query: 459 NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-KMVYRHLQDGDVVLVNRQPTLHKPSIM 517
+ R ++ ++L T +P +G K+V RH+++GD++L+NRQPTLH+PSI
Sbjct: 518 DAAQREAVAKQLLTPATGAPKP--------QGTKVVCRHVKNGDILLLNRQPTLHRPSIQ 569
Query: 518 AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
AH R+L EK LR+HYANC YNADFDGDEMN HFPQ E+ RAEAY + + QY+ P
Sbjct: 570 AHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPK 629
Query: 578 NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
+G PL LIQDH+VS A +T + F R+++ +
Sbjct: 630 DGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 662
Score = 275 (101.9 bits), Expect = 3.0e-175, Sum P(6) = 3.0e-175
Identities = 56/109 (51%), Positives = 78/109 (71%)
Query: 1095 SNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSV 1154
S + ++ D ++ A + + +E++ L++ K+ SL PGE VGLLA+QS+
Sbjct: 1167 SETFEKKIDDFSQEWAAQAERSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSI 1226
Query: 1155 GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+
Sbjct: 1227 GEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPV 1275
Score = 116 (45.9 bits), Expect = 3.0e-175, Sum P(6) = 3.0e-175
Identities = 38/157 (24%), Positives = 65/157 (41%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
C TC Q C GH GHIDL + VYNP + C CH R + + +
Sbjct: 64 CATCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQ 123
Query: 61 LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
L ++ G + A L+ L E+ +P ++ + T + +N+ +
Sbjct: 124 LRVLEVGALQAVYELERILSRFLEETGDPSAFEIQEE--LEEYTSKILQNNLLGSQGTHV 181
Query: 118 TSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISK 152
++ + +KL + QF K + +C +CK + K
Sbjct: 182 KNVCESRSKL-VAQFWKTHMAAKQCPHCKTGRSVVRK 217
Score = 109 (43.4 bits), Expect = 3.0e-175, Sum P(6) = 3.0e-175
Identities = 35/117 (29%), Positives = 57/117 (48%)
Query: 208 TFPGTQDTAARRHQKGSG---AVPS--GFKKQKDLFSGPLLPSDVKDIIEKLWENE-FEL 261
T+P T + Q+G+ VP G K + G L PS ++ + +W+NE F L
Sbjct: 226 TYPAT--VHKKSDQEGTELPEGVPEAPGIDKAQMGKRGYLTPSSAQEHLFAIWKNEGFFL 283
Query: 262 CSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQ 318
S + G S+FFL ++VPP ++R ++ GD + + QTV L V++
Sbjct: 284 NYLFSGLDDIGPESSFNPSMFFLDFIVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMK 340
Score = 80 (33.2 bits), Expect = 3.0e-175, Sum P(6) = 3.0e-175
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 647 PAIWKPEPLWTGKQVITAVLNHI 669
PAI KP PLWTGKQV++ +L +I
Sbjct: 680 PAILKPFPLWTGKQVVSTLLINI 702
Score = 42 (19.8 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 471 DTSRGAIVQPGKDSDNEFEGKMVYRHLQDGD 501
DT Q ++ D E EG +V ++GD
Sbjct: 1386 DTEDSGRSQREEERDEEEEGNIVDAEAEEGD 1416
Score = 37 (18.1 bits), Expect = 1.5e-30, Sum P(4) = 1.5e-30
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 386 RVNYACRSVISPDPYLAVNEIGIPPYFA-LRLTYPERV 422
R Y R+ PDP L+V I YFA + T+ +++
Sbjct: 1139 RWKYQKRAAPCPDPSLSVWRPDI--YFASVSETFEKKI 1174
>RGD|620824 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISO;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IDA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:620824
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 KO:K02999 PANTHER:PTHR19376:SF11 CTD:25885
HOGENOM:HOG000205401 HOVERGEN:HBG017741 OrthoDB:EOG41VK23
EMBL:AF025425 IPI:IPI00199160 PIR:T14103 RefSeq:NP_113960.1
UniGene:Rn.24877 ProteinModelPortal:O54889 STRING:O54889
PhosphoSite:O54889 PRIDE:O54889 GeneID:83581 KEGG:rno:83581
UCSC:RGD:620824 InParanoid:O54889 NextBio:616111
ArrayExpress:O54889 Genevestigator:O54889 Uniprot:O54889
Length = 1716
Score = 711 (255.3 bits), Expect = 5.2e-175, Sum P(6) = 5.2e-175
Identities = 150/307 (48%), Positives = 205/307 (66%)
Query: 754 IYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH-GFTCG 810
I + +L+ GV+DKA + YGLVH E+YG T+G +L+ L+RLFT +LQ++ GFT G
Sbjct: 746 IREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLG 805
Query: 811 VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
V+D+L+ + + R+ + S + G R AL L + A D I+ K + + D
Sbjct: 806 VEDILVKPNADVMRQRIIEESTQCGPRAVRAALNLPEAASCDEIQGKWQDAIWRKDQRDF 865
Query: 871 AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
+ DMK ++N H S+ + + GL + +N + +M SGAKGS VN QIS
Sbjct: 866 NM--IDMKFKEEVN-HYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCL 922
Query: 931 LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+ RFLTG+RP E++FHCMAGREGL
Sbjct: 923 LGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGL 982
Query: 991 VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS-- 1048
VDTAVKTSRSGYLQRC+IK+LE L I YD +VRD+DGS+VQF YGEDG+D+ +T F+
Sbjct: 983 VDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPK 1042
Query: 1049 KFDALAA 1055
+F LA+
Sbjct: 1043 QFPFLAS 1049
Score = 682 (245.1 bits), Expect = 5.2e-175, Sum P(6) = 5.2e-175
Identities = 135/273 (49%), Positives = 181/273 (66%)
Query: 341 WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
W+ LQ VN++FD + GI Q+LEKKEGLFR+ +MGKRV+YA RSVI PD Y
Sbjct: 398 WIRLQSHVNIVFDSDMDKLMLEKYPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMY 457
Query: 401 LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL--DKLSTMRLPP 458
+ NEIGIP FA +LTYP+ VTPWNV +LR ++ING +HPGA+ + D T
Sbjct: 458 INTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAV 517
Query: 459 NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-KMVYRHLQDGDVVLVNRQPTLHKPSIM 517
+ R ++ ++L T I +P +G K+V RH+++GD++L+NRQPTLH+PSI
Sbjct: 518 DATQREAVAKQLLTPSTGIPKP--------QGAKVVCRHVKNGDILLLNRQPTLHRPSIQ 569
Query: 518 AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
AH +L EK LR+HYANC YNADFDGDEMN HFPQ E+ RAEAY + + QY+ P
Sbjct: 570 AHRAHILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPK 629
Query: 578 NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
+G PL LIQDH+VS A +T + F R+++ +
Sbjct: 630 DGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 662
Score = 270 (100.1 bits), Expect = 5.2e-175, Sum P(6) = 5.2e-175
Identities = 56/109 (51%), Positives = 77/109 (70%)
Query: 1095 SNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSV 1154
S + ++ D ++ A + +E++ L++ K+ SL PGE VGLLA+QS+
Sbjct: 1167 SETFEKKIDDYSQEWAAQAEKSHNRSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSI 1226
Query: 1155 GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+
Sbjct: 1227 GEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPV 1275
Score = 118 (46.6 bits), Expect = 5.2e-175, Sum P(6) = 5.2e-175
Identities = 39/157 (24%), Positives = 66/157 (42%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
C TC Q C GH GHIDL + VYNP + C CH R + V +
Sbjct: 64 CSTCVQDFNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAIHLLVCQ 123
Query: 61 LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
L+++ G + A L+ L E+S+P ++ + T + +N+ +
Sbjct: 124 LKVLDVGALQAVYELERILSRFLEETSDPSAFEIQEE--LEEYTSKILQNNLLGSQGAHV 181
Query: 118 TSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISK 152
++ + +KL + F K + +C +CK + K
Sbjct: 182 KNVCESRSKL-VAHFWKTHMAAKRCPHCKTGRSVVRK 217
Score = 108 (43.1 bits), Expect = 5.2e-175, Sum P(6) = 5.2e-175
Identities = 30/98 (30%), Positives = 51/98 (52%)
Query: 222 KGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHS 280
+G+ A P G + + G L PS ++ + +W+NE F L S + G S
Sbjct: 244 EGAPAAP-GIDEAQMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPS 302
Query: 281 IFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQ 318
+FFL ++VPP ++R ++ GD + + QTV L V++
Sbjct: 303 MFFLDFIVVPPSRYRPINRLGDQMFTNGQTVNLQAVMK 340
Score = 80 (33.2 bits), Expect = 5.2e-175, Sum P(6) = 5.2e-175
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 647 PAIWKPEPLWTGKQVITAVLNHI 669
PAI KP PLWTGKQV++ +L +I
Sbjct: 680 PAILKPFPLWTGKQVVSTLLINI 702
Score = 40 (19.1 bits), Expect = 2.3e-06, Sum P(4) = 2.3e-06
Identities = 25/113 (22%), Positives = 50/113 (44%)
Query: 344 LQQSVNVL-FDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLA 402
+Q +V L +GK G+ + Q+ + + R+K Y R+ PDP L+
Sbjct: 1103 IQAAVKALNLEGKTQNGRSPETQQMLQMWHELDEQSRRK-------YQKRAAPCPDPSLS 1155
Query: 403 VNEIGIPPYFA-LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM 454
V I +FA + T+ +++ ++ ++ + H + LD+L T+
Sbjct: 1156 VWRPDI--HFASVSETFEKKIDDYS----QEWAAQAEKSHNRSELSLDRLRTL 1202
Score = 37 (18.1 bits), Expect = 2.3e-06, Sum P(4) = 2.3e-06
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 482 KDSDNEFEGKMVYRHLQDGD 501
++ D E EG +V ++GD
Sbjct: 1397 EERDEEEEGNIVDAEAEEGD 1416
>UNIPROTKB|E1BIX2 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11 CTD:25885
GeneTree:ENSGT00550000074861 EMBL:DAAA02031123 IPI:IPI00714586
RefSeq:NP_001179805.1 UniGene:Bt.52712 PRIDE:E1BIX2
Ensembl:ENSBTAT00000008496 GeneID:536316 KEGG:bta:536316
NextBio:20876927 Uniprot:E1BIX2
Length = 1717
Score = 696 (250.1 bits), Expect = 9.2e-175, Sum P(6) = 9.2e-175
Identities = 142/297 (47%), Positives = 195/297 (65%)
Query: 754 IYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH-GFTCG 810
I +L+ GV+DKA + YGLVH E+YG T+G +L+ L+RLFT +LQ++ GFT G
Sbjct: 739 IRAGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLG 798
Query: 811 VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
V+D+L+ + R + S G R AL L + D ++ K + + D
Sbjct: 799 VEDILVKPKADVRRHGIIEDSTHCGPRAVRAALNLPEAVSCDEVQGKWQDAHLSKDQRDF 858
Query: 871 AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
+ D+K ++N H S+ + + GL + +N + +M SGAKGS VN QIS
Sbjct: 859 NM--IDLKFKEEVN-HYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCL 915
Query: 931 LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+ RFLTG++P E++FHCMAGREGL
Sbjct: 916 LGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGL 975
Query: 991 VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFI 1047
VDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF YGEDG+D+ +T F+
Sbjct: 976 VDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFL 1032
Score = 690 (248.0 bits), Expect = 9.2e-175, Sum P(6) = 9.2e-175
Identities = 136/273 (49%), Positives = 184/273 (67%)
Query: 341 WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
W+ LQ VN++FD + + GI Q+LEKK+GLFR+ +MGKRV+YA RSVI PD Y
Sbjct: 391 WIRLQSHVNIVFDSEMDKLMMEKYPGIRQILEKKDGLFRKHMMGKRVDYAARSVICPDMY 450
Query: 401 LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL--DKLSTMRLPP 458
++ NEIGIP FA +LTYP+ VTPWNV +LR ++ING +HPGA+ + D T
Sbjct: 451 ISTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNMHPGASMVINEDGSRTALSAS 510
Query: 459 NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-KMVYRHLQDGDVVLVNRQPTLHKPSIM 517
+ R ++ ++L T +P +G K+V RH+++GD++L+NRQPTLH+PSI
Sbjct: 511 DLTQREAVAKQLLTPATGAPKP--------QGTKIVCRHVKNGDILLLNRQPTLHRPSIQ 562
Query: 518 AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
AH RVL EK LR+HYANC YNADFDGDEMN HFPQ E+ RAEAY + + QY+ P
Sbjct: 563 AHRARVLPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPK 622
Query: 578 NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
+G PL LIQDH+VS A +T + F NR+++ +
Sbjct: 623 DGQPLAGLIQDHMVSGANMTIRGCFFNREQYME 655
Score = 269 (99.8 bits), Expect = 9.2e-175, Sum P(6) = 9.2e-175
Identities = 54/79 (68%), Positives = 67/79 (84%)
Query: 1126 DFLK-LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
D L+ L++ K+ SL PGE VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+
Sbjct: 1190 DSLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR 1249
Query: 1185 EILTIASKDIKTPVITCPL 1203
EIL +AS +IKTP+++ P+
Sbjct: 1250 EILMVASSNIKTPMMSVPV 1268
Score = 119 (46.9 bits), Expect = 9.2e-175, Sum P(6) = 9.2e-175
Identities = 41/159 (25%), Positives = 65/159 (40%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
C TC Q C GH GHIDL + VYNP + C CH R V + +
Sbjct: 64 CSTCVQDFTNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVVHLLLCQ 123
Query: 61 LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
L ++ G + A L+ L E+++P ++ + + N NL +
Sbjct: 124 LRVLEVGALQAVYELERILYRFLEENADPTACEIQEELEQYTIKILQN-----NLPGSQG 178
Query: 118 TSLQ-FAEAKLALLQ-FLKIETT--KCGNCKAKNPRISK 152
++ E+K L+ F K+ T +C +CK + K
Sbjct: 179 AQVKNVCESKSKLISVFWKVHMTAKRCPHCKTGRSVVRK 217
Score = 116 (45.9 bits), Expect = 9.2e-175, Sum P(6) = 9.2e-175
Identities = 32/102 (31%), Positives = 53/102 (51%)
Query: 218 RRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKK 276
R QK S P G ++ + G L PS ++ + LW+NE F L ++ G +
Sbjct: 234 RADQKDSE--PQGIEEAQMGKRGYLTPSSAQEHLIALWKNEGFFLNYLFLGLEDVGMESR 291
Query: 277 AGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQ 318
S+FFL ++VPP ++R ++ GD + + QTV L V++
Sbjct: 292 FNPSMFFLDFLVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMK 333
Score = 80 (33.2 bits), Expect = 9.2e-175, Sum P(6) = 9.2e-175
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 647 PAIWKPEPLWTGKQVITAVLNHI 669
PAI KP PLWTGKQV++ +L +I
Sbjct: 673 PAILKPFPLWTGKQVVSTLLINI 695
Score = 41 (19.5 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 459 NKKMRISIGRKLDTSRGAIVQPGK-DSDNEFEGKMVYRHLQDGD 501
N R + R LD + + G+ + D E EG +V ++GD
Sbjct: 1366 NVNTRKATQRDLDNAGESERNRGEQEGDEEEEGHIVDAEAEEGD 1409
Score = 38 (18.4 bits), Expect = 2.0e-102, Sum P(5) = 2.0e-102
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 456 LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYR 495
+P N + IG K + PG + D+ E +++ R
Sbjct: 701 IPLNLSGKAKIGGKAWVKESPRLVPGFNPDSMCESQVIIR 740
Score = 38 (18.4 bits), Expect = 5.1e-24, Sum P(3) = 5.1e-24
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 192 GASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVP 228
G + + +PET+ + + + R++QK + P
Sbjct: 1107 GTNQNGRSPETYQMLRMWAELDEQSRRKYQKKAAPCP 1143
>UNIPROTKB|F1SVC3 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
OMA:CLLNETT PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:CU570839 Ensembl:ENSSSCT00000009008 Uniprot:F1SVC3
Length = 1723
Score = 705 (253.2 bits), Expect = 6.7e-174, Sum P(6) = 6.7e-174
Identities = 147/307 (47%), Positives = 201/307 (65%)
Query: 754 IYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH-GFTCG 810
I +L+ GV+DKA + YGLVH E+YG T+G +L+ L+RLFT +LQ++ GFT G
Sbjct: 743 IRDGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLG 802
Query: 811 VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
V+D+L+ + R + S G R AL L + A D ++ K + + D
Sbjct: 803 VEDILVKPRADVRRHRIIEESTRCGPRAVRAALNLPEAASCDEVRGKWQDAHLSKDQRDF 862
Query: 871 AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
+ D+K ++N H S+ + + GL + +N + +M SGAKGS VN QIS
Sbjct: 863 NM--IDLKFKEEVNHH-SNEINKACMPLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCL 919
Query: 931 LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+ RFLTG+RP E++FHCMAGREGL
Sbjct: 920 LGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGL 979
Query: 991 VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS-- 1048
VDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF YGEDG+D+ +T F+
Sbjct: 980 VDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPK 1039
Query: 1049 KFDALAA 1055
+F LA+
Sbjct: 1040 QFPFLAS 1046
Score = 680 (244.4 bits), Expect = 6.7e-174, Sum P(6) = 6.7e-174
Identities = 134/273 (49%), Positives = 182/273 (66%)
Query: 341 WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
W+ LQ VN++FD + + GI Q+LEKK+GLFR+ +MGKRV+YA RSVI PD Y
Sbjct: 395 WIRLQSHVNIVFDSEMDKLTMEKYPGIRQILEKKDGLFRKHMMGKRVDYAARSVICPDMY 454
Query: 401 LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL--DKLSTMRLPP 458
+ NEIGIP FA +LTYP+ VTPWNV +LR ++ING +HPGA+ + D T
Sbjct: 455 INTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPTVHPGASMVINEDGSRTALSAS 514
Query: 459 NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-KMVYRHLQDGDVVLVNRQPTLHKPSIM 517
+ R ++ ++L T +P +G K+V RH+++GD++L+NRQPTLH+PSI
Sbjct: 515 DLTQREAVAKQLLTPATGAPKP--------QGTKIVCRHVKNGDILLLNRQPTLHRPSIQ 566
Query: 518 AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
AH R+L EK LR+HYANC YNADFDGDEMN HFPQ E+ RAEAY + + QY+ P
Sbjct: 567 AHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPK 626
Query: 578 NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
+G PL LIQDH+VS A +T + F R+++ +
Sbjct: 627 DGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 659
Score = 275 (101.9 bits), Expect = 6.7e-174, Sum P(6) = 6.7e-174
Identities = 57/94 (60%), Positives = 74/94 (78%)
Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
AEK +K +E++ + L++ K+ SL PGE VGLLA+QS+GEPSTQMTLNTFH A
Sbjct: 1182 AEKSHEK---SELSLERLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFA 1238
Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
GRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+
Sbjct: 1239 GRGEMNVTLGIPRLREILMVASANIKTPMMSVPV 1272
Score = 116 (45.9 bits), Expect = 6.7e-174, Sum P(6) = 6.7e-174
Identities = 39/157 (24%), Positives = 64/157 (40%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
C TC Q CPGH GHI+L + VYNP + C CH R + + +
Sbjct: 64 CSTCVQDFNNCPGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123
Query: 61 LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
L ++ G + A L+ L E+ +P S++ + T N N+
Sbjct: 124 LRVLEVGALQAVYELERILYRFLEENPDPTASEIQEELEQYTATIVQN--NLLGSHGSHV 181
Query: 118 TSLQFAEAKLALLQFLKIETT--KCGNCKAKNPRISK 152
++ + +KL + F K T +C +C+ + K
Sbjct: 182 KNVCESRSKL-IASFWKAHMTAKRCPHCRTGRSVVRK 217
Score = 104 (41.7 bits), Expect = 6.7e-174, Sum P(6) = 6.7e-174
Identities = 32/114 (28%), Positives = 54/114 (47%)
Query: 208 TFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENE---FELCSF 264
T+P A QK + G ++ + G L P +D + LW+NE F L
Sbjct: 226 TYPAMVHRKA--DQKDAEPQAPGIEEAQMGKRGYLTPLSAQDHLIALWKNEDTGFFLNYL 283
Query: 265 ISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQ 318
++ G + S+FFL ++VPP ++R ++ GD + + QTV L V++
Sbjct: 284 FLGLEDVGLESRFNPSMFFLDFLVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMK 337
Score = 80 (33.2 bits), Expect = 6.7e-174, Sum P(6) = 6.7e-174
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 647 PAIWKPEPLWTGKQVITAVLNHI 669
PAI KP PLWTGKQV++ +L +I
Sbjct: 677 PAILKPFPLWTGKQVVSTLLINI 699
Score = 50 (22.7 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 449 DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPG-KDSDNEFEGKMVYRHLQDGD 501
+K ST R N R + R LD S + G ++ D+E EG +V ++GD
Sbjct: 1363 NKASTFR---NVNTRRATQRDLDDSGESERTRGDREGDDEEEGHIVDAEAEEGD 1413
Score = 47 (21.6 bits), Expect = 2.8e-25, Sum P(3) = 2.8e-25
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 192 GASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVP 228
GA+ + +PETH + + + R++QK + P
Sbjct: 1111 GANQNGRSPETHQVLRMWSELDEQSRRKYQKKAAPCP 1147
>UNIPROTKB|J9P5G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K02999 PANTHER:PTHR19376:SF11
CTD:25885 GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
RefSeq:XP_532976.3 Ensembl:ENSCAFT00000047500 GeneID:475766
KEGG:cfa:475766 Uniprot:J9P5G4
Length = 1717
Score = 707 (253.9 bits), Expect = 9.2e-174, Sum P(6) = 9.2e-174
Identities = 147/307 (47%), Positives = 202/307 (65%)
Query: 754 IYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH-GFTCG 810
I + +L+ GV+DKA + YGLVH E+YG T+G +L+ L+RLFT +LQ++ GFT G
Sbjct: 739 IREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLG 798
Query: 811 VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
V+D+L+ + + +R + S G R AL L + A D ++ K + A G
Sbjct: 799 VEDILVKRKADMKRHLVIEESTHCGPRAVRAALNLPEAASCDEVRGKWQ--DAHLGKDQR 856
Query: 871 AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
D+K ++N H S+ + + GL + N + +M SGAKGS VN QIS
Sbjct: 857 DFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPDNNLQMMVQSGAKGSTVNTMQISCL 915
Query: 931 LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+ RFLTG++P E++FHCMAGREGL
Sbjct: 916 LGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGL 975
Query: 991 VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS-- 1048
VDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF YGEDG+D+ +T F+
Sbjct: 976 VDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPK 1035
Query: 1049 KFDALAA 1055
+F LA+
Sbjct: 1036 QFPFLAS 1042
Score = 680 (244.4 bits), Expect = 9.2e-174, Sum P(6) = 9.2e-174
Identities = 134/273 (49%), Positives = 182/273 (66%)
Query: 341 WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
W+ LQ VN++FD + + GI Q+LEKK+GLFR+ +MGKRV+YA RSVI PD Y
Sbjct: 391 WIRLQSHVNIVFDSEMDKLMMEKYPGIRQILEKKDGLFRKHMMGKRVDYAARSVICPDMY 450
Query: 401 LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL--DKLSTMRLPP 458
+ NEIGIP FA +LTYP+ VTPWNV +LR ++ING +HPGA+ + D T
Sbjct: 451 INTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAI 510
Query: 459 NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-KMVYRHLQDGDVVLVNRQPTLHKPSIM 517
+ R ++ ++L T +P +G K+V RH+++GD++L+NRQPTLH+PSI
Sbjct: 511 DLTQREAVAKQLLTPATGAPKP--------QGTKIVCRHVKNGDILLLNRQPTLHRPSIQ 562
Query: 518 AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
AH R+L EK LR+HYANC YNADFDGDEMN HFPQ E+ RAEAY + + QY+ P
Sbjct: 563 AHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPK 622
Query: 578 NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
+G PL LIQDH+VS A +T + F R+++ +
Sbjct: 623 DGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 655
Score = 272 (100.8 bits), Expect = 9.2e-174, Sum P(6) = 9.2e-174
Identities = 55/91 (60%), Positives = 72/91 (79%)
Query: 1114 ADK-FLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRG 1172
A+K + +E++ L++ K+ SL PGE VGLLA+QS+GEPSTQMTLNTFH AGRG
Sbjct: 1178 AEKSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRG 1237
Query: 1173 EMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
EMNVTLGIPRL+EIL +AS +IKTP+++ P+
Sbjct: 1238 EMNVTLGIPRLREILMVASANIKTPMMSVPV 1268
Score = 111 (44.1 bits), Expect = 9.2e-174, Sum P(6) = 9.2e-174
Identities = 27/92 (29%), Positives = 49/92 (53%)
Query: 228 PSGFKKQKDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGV 286
P G ++ + G L P+ ++ + LW+NE F L S ++ + S+FFL
Sbjct: 242 PLGIEETQLGKRGYLTPTSAREHLTALWKNEGFFLNYLFSGLEDVDMESRFNPSVFFLDF 301
Query: 287 VLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQ 318
++VPP ++R ++ GD + + QTV L V++
Sbjct: 302 LVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMK 333
Score = 107 (42.7 bits), Expect = 9.2e-174, Sum P(6) = 9.2e-174
Identities = 37/155 (23%), Positives = 60/155 (38%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
C TC Q C GH GHI+L + VYNP + C CH R + V +
Sbjct: 64 CSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQ 123
Query: 61 LELIIKGDIIAAKSLDLDLPSE-SSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTS 119
L ++ G + A L+ L N + + + T + +N+ +
Sbjct: 124 LRVLEVGALQAVYELERILNRFLEENADPTAFKIQEELEQYTAKIVQNNLLGPHGAHVKN 183
Query: 120 LQFAEAKLALLQFLKIETT--KCGNCKAKNPRISK 152
+ + +KL + F K T +C +CK + K
Sbjct: 184 VCDSRSKL-IAYFWKAHMTAKRCPHCKTGRSVVRK 217
Score = 81 (33.6 bits), Expect = 9.2e-174, Sum P(6) = 9.2e-174
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 647 PAIWKPEPLWTGKQVI-TAVLNHITRGRPPFVVERGGKL 684
PAI KP PLWTGKQV+ T ++N I P + K+
Sbjct: 673 PAILKPFPLWTGKQVVSTLLINIIPEDHIPLSLSGKAKI 711
Score = 46 (21.3 bits), Expect = 5.6e-160, Sum P(5) = 5.6e-160
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 62 ELIIKGDIIAAKSLDLDLPSESSNP---EDSDVS---NKSSCSMVTPRGNYDNVRNLKPQ 115
++++ ++A + + +LP E S P E+ D S ++S SM+ + D + N+
Sbjct: 334 DMVLIRKLLALMAQEQELPCEVSGPAKDEEKDSSIALDRSFLSMLPGQSLTDKLYNI--- 390
Query: 116 EWTSLQ 121
W LQ
Sbjct: 391 -WIRLQ 395
Score = 44 (20.5 bits), Expect = 3.2e-30, Sum P(4) = 3.2e-30
Identities = 23/90 (25%), Positives = 38/90 (42%)
Query: 341 WMNLQQSVNVLFDGKNA--AGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
++N Q + N Q + G Q+L+ L Q R Y ++ PD
Sbjct: 1089 FLNYSQKIQAAVKALNLEDGNQNGRSLGTHQILKMWGELDEQS----RRKYQKKAAPCPD 1144
Query: 399 PYLAVNEIGIPPYFA-LRLTYPERVTPWNV 427
P LAV I YFA + T+ ++V +++
Sbjct: 1145 PSLAVWRPDI--YFASVSETFEKKVDDYSL 1172
Score = 43 (20.2 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
Identities = 18/68 (26%), Positives = 27/68 (39%)
Query: 875 FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV------NFQQIS 928
F M +L K + S+ N + L P+ N + + A +V +F S
Sbjct: 17 FGMYSAEELKKLSVKSITNPRYLDSLGNPSA-NGLYDLALGPADSKEVCSTCVQDFNNCS 75
Query: 929 SHLGQQEL 936
HLG EL
Sbjct: 76 GHLGHIEL 83
>UNIPROTKB|E2R0G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
Ensembl:ENSCAFT00000012228 Uniprot:E2R0G4
Length = 1746
Score = 707 (253.9 bits), Expect = 4.9e-173, Sum P(6) = 4.9e-173
Identities = 147/307 (47%), Positives = 202/307 (65%)
Query: 754 IYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH-GFTCG 810
I + +L+ GV+DKA + YGLVH E+YG T+G +L+ L+RLFT +LQ++ GFT G
Sbjct: 751 IREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLG 810
Query: 811 VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
V+D+L+ + + +R + S G R AL L + A D ++ K + A G
Sbjct: 811 VEDILVKRKADMKRHLVIEESTHCGPRAVRAALNLPEAASCDEVRGKWQ--DAHLGKDQR 868
Query: 871 AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
D+K ++N H S+ + + GL + N + +M SGAKGS VN QIS
Sbjct: 869 DFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPDNNLQMMVQSGAKGSTVNTMQISCL 927
Query: 931 LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+ RFLTG++P E++FHCMAGREGL
Sbjct: 928 LGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGL 987
Query: 991 VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS-- 1048
VDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF YGEDG+D+ +T F+
Sbjct: 988 VDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPK 1047
Query: 1049 KFDALAA 1055
+F LA+
Sbjct: 1048 QFPFLAS 1054
Score = 680 (244.4 bits), Expect = 4.9e-173, Sum P(6) = 4.9e-173
Identities = 134/273 (49%), Positives = 182/273 (66%)
Query: 341 WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
W+ LQ VN++FD + + GI Q+LEKK+GLFR+ +MGKRV+YA RSVI PD Y
Sbjct: 403 WIRLQSHVNIVFDSEMDKLMMEKYPGIRQILEKKDGLFRKHMMGKRVDYAARSVICPDMY 462
Query: 401 LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL--DKLSTMRLPP 458
+ NEIGIP FA +LTYP+ VTPWNV +LR ++ING +HPGA+ + D T
Sbjct: 463 INTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAI 522
Query: 459 NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-KMVYRHLQDGDVVLVNRQPTLHKPSIM 517
+ R ++ ++L T +P +G K+V RH+++GD++L+NRQPTLH+PSI
Sbjct: 523 DLTQREAVAKQLLTPATGAPKP--------QGTKIVCRHVKNGDILLLNRQPTLHRPSIQ 574
Query: 518 AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
AH R+L EK LR+HYANC YNADFDGDEMN HFPQ E+ RAEAY + + QY+ P
Sbjct: 575 AHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPK 634
Query: 578 NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
+G PL LIQDH+VS A +T + F R+++ +
Sbjct: 635 DGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 667
Score = 272 (100.8 bits), Expect = 4.9e-173, Sum P(6) = 4.9e-173
Identities = 55/91 (60%), Positives = 72/91 (79%)
Query: 1114 ADK-FLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRG 1172
A+K + +E++ L++ K+ SL PGE VGLLA+QS+GEPSTQMTLNTFH AGRG
Sbjct: 1190 AEKSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRG 1249
Query: 1173 EMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
EMNVTLGIPRL+EIL +AS +IKTP+++ P+
Sbjct: 1250 EMNVTLGIPRLREILMVASANIKTPMMSVPV 1280
Score = 106 (42.4 bits), Expect = 4.9e-173, Sum P(6) = 4.9e-173
Identities = 24/76 (31%), Positives = 33/76 (43%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
C TC Q C GH GHI+L + VYNP + C CH R + V +
Sbjct: 64 CSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQ 123
Query: 61 LELIIKGDIIAAKSLD 76
L ++ G + A L+
Sbjct: 124 LRVLEVGALQAVYELE 139
Score = 106 (42.4 bits), Expect = 4.9e-173, Sum P(6) = 4.9e-173
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 240 GPLLPSDVKDIIEKLWENE---FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRL 296
G L P+ ++ + LW+NE F L S ++ + S+FFL ++VPP ++R
Sbjct: 264 GYLTPTSAREHLTALWKNEDTGFFLNYLFSGLEDVDMESRFNPSVFFLDFLVVPPSRYRP 323
Query: 297 PSKGGDSVMEHPQTVLLSKVLQ 318
++ GD + + QTV L V++
Sbjct: 324 VNRLGDQMFTNGQTVNLQAVMK 345
Score = 81 (33.6 bits), Expect = 4.9e-173, Sum P(6) = 4.9e-173
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 647 PAIWKPEPLWTGKQVI-TAVLNHITRGRPPFVVERGGKL 684
PAI KP PLWTGKQV+ T ++N I P + K+
Sbjct: 685 PAILKPFPLWTGKQVVSTLLINIIPEDHIPLSLSGKAKI 723
Score = 46 (21.3 bits), Expect = 6.7e-160, Sum P(5) = 6.7e-160
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 62 ELIIKGDIIAAKSLDLDLPSESSNP---EDSDVS---NKSSCSMVTPRGNYDNVRNLKPQ 115
++++ ++A + + +LP E S P E+ D S ++S SM+ + D + N+
Sbjct: 346 DMVLIRKLLALMAQEQELPCEVSGPAKDEEKDSSIALDRSFLSMLPGQSLTDKLYNI--- 402
Query: 116 EWTSLQ 121
W LQ
Sbjct: 403 -WIRLQ 407
Score = 44 (20.5 bits), Expect = 1.4e-29, Sum P(4) = 1.4e-29
Identities = 23/90 (25%), Positives = 38/90 (42%)
Query: 341 WMNLQQSVNVLFDGKNA--AGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
++N Q + N Q + G Q+L+ L Q R Y ++ PD
Sbjct: 1101 FLNYSQKIQAAVKALNLEDGNQNGRSLGTHQILKMWGELDEQS----RRKYQKKAAPCPD 1156
Query: 399 PYLAVNEIGIPPYFA-LRLTYPERVTPWNV 427
P LAV I YFA + T+ ++V +++
Sbjct: 1157 PSLAVWRPDI--YFASVSETFEKKVDDYSL 1184
Score = 43 (20.2 bits), Expect = 8.8e-18, Sum P(2) = 8.8e-18
Identities = 18/68 (26%), Positives = 27/68 (39%)
Query: 875 FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV------NFQQIS 928
F M +L K + S+ N + L P+ N + + A +V +F S
Sbjct: 17 FGMYSAEELKKLSVKSITNPRYLDSLGNPSA-NGLYDLALGPADSKEVCSTCVQDFNNCS 75
Query: 929 SHLGQQEL 936
HLG EL
Sbjct: 76 GHLGHIEL 83
>FB|FBgn0019938 [details] [associations]
symbol:RpI1 "RNA polymerase I subunit" species:7227
"Drosophila melanogaster" [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 EMBL:AE013599 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 EMBL:Y09103 EMBL:AY121632 PIR:T13803
RefSeq:NP_523743.1 UniGene:Dm.8031 ProteinModelPortal:P91875
SMR:P91875 MINT:MINT-1742038 STRING:P91875 PaxDb:P91875
GeneID:36617 KEGG:dme:Dmel_CG10122 CTD:36617 FlyBase:FBgn0019938
InParanoid:P91875 OrthoDB:EOG466T1R GenomeRNAi:36617 NextBio:799515
Bgee:P91875 GermOnline:CG10122 Uniprot:P91875
Length = 1642
Score = 697 (250.4 bits), Expect = 1.2e-168, Sum P(6) = 1.2e-168
Identities = 152/359 (42%), Positives = 215/359 (59%)
Query: 274 GKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANI-------YLANA 326
G ++ +FF+ + V P + R + GD + +PQT + +++ N Y+
Sbjct: 287 GDRSPVDLFFMDTLPVTPPRARPLNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGG 346
Query: 327 YVNQPDNAKV-------------IVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEK 373
+ AK + W+ LQ SV+VL D N + + G+ Q++EK
Sbjct: 347 QEKLTEEAKAAYQTLKGETAHEKLYTAWLALQMSVDVLLD-VNMSREMKSGEGLKQIIEK 405
Query: 374 KEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDS 433
K GL R +MGKRVNYA R+VI+PDP + V+EIGIP FA +L+YP VT WNV +LR
Sbjct: 406 KSGLIRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKM 465
Query: 434 IINGAEIHPGATHYLDKLS-TMRLPP-NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGK 491
++NG ++HPGA + DK T +P N R S+ + L + P KD K
Sbjct: 466 VMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLL------LSNP-KDGI-----K 513
Query: 492 MVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNV 551
+V+RH+ +GDV+L+NRQP+LHKPSIM H R+L GEKT R+HY+NC YNADFDGDEMN
Sbjct: 514 IVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNA 573
Query: 552 HFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
H+PQ EV+RAEAYN+VN + Y+ P +G PL LIQDH++S L+ + F NR+++ Q
Sbjct: 574 HYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQ 632
Score = 687 (246.9 bits), Expect = 1.2e-168, Sum P(6) = 1.2e-168
Identities = 146/302 (48%), Positives = 200/302 (66%)
Query: 754 IYKNDLVRGVIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
I +L+ GV+DK Q+ YGL+H + ELYG + + LL+A +++FT FLQ+ GFT GV
Sbjct: 719 IRNGELLVGVLDKQQYGATTYGLIHCMYELYGGDVSTLLLTAFTKVFTFFLQLEGFTLGV 778
Query: 812 DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAA 871
D+L+ +R+R+ + +G ALELED D +L ++E A
Sbjct: 779 KDILVTDVADRKRRKIIRECRNVGNSAVAAALELEDEPPHD--ELVEKMEAAYVKDSKFR 836
Query: 872 VAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHL 931
V D K S L+ +T+ + + L GL+ N + LM SGAKGS VN QIS L
Sbjct: 837 VL-LDRKYKSLLDGYTND-INSTCLPRGLITKFPSNNLQLMVLSGAKGSMVNTMQISCLL 894
Query: 932 GQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLV 991
GQ ELEGKR P M+SGK+LPSF ++ +P++GGFI RF+TG++PQ+++FHCMAGREGL+
Sbjct: 895 GQIELEGKRPPLMISGKSLPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLI 954
Query: 992 DTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS-KF 1050
DTAVKTSRSGYLQRCLIK+LE L + YD +VRD+D S+VQF YGEDG+D+ ++ F + KF
Sbjct: 955 DTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFLYGEDGLDILKSKFFNDKF 1014
Query: 1051 DA 1052
A
Sbjct: 1015 CA 1016
Score = 282 (104.3 bits), Expect = 1.2e-168, Sum P(6) = 1.2e-168
Identities = 56/104 (53%), Positives = 75/104 (72%)
Query: 1105 ALKDNAEKFADKFLSNEMA-KQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTL 1163
++ + K + + A K+ +++ K + SLA PGEPVGL+A+QS+GEPSTQMTL
Sbjct: 1136 SVSERTRKLITDYAKRKPALKETIADIMRVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTL 1195
Query: 1164 NTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
NTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP + P+ G+
Sbjct: 1196 NTFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMDIPIKPGQ 1239
Score = 129 (50.5 bits), Expect = 1.2e-168, Sum P(6) = 1.2e-168
Identities = 30/77 (38%), Positives = 38/77 (49%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
C TC + Q CPGH GHI+L PVYNP C C+ + E E + +
Sbjct: 66 CGTCLKLQD-CPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQ 124
Query: 61 LELIIKGDIIAAKSLDL 77
L LI G II A+ L+L
Sbjct: 125 LRLIDAGYIIEAQELEL 141
Score = 75 (31.5 bits), Expect = 1.2e-168, Sum P(6) = 1.2e-168
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 635 ISRSEQEVLPLLPAIWKPEPLWTGKQVI-TAVLNHITRG 672
+S+ ++++ L P I KP LW+GKQ++ T ++N I G
Sbjct: 638 LSQLKKDIKLLPPTILKPAVLWSGKQILSTIIINIIPEG 676
Score = 39 (18.8 bits), Expect = 1.2e-168, Sum P(6) = 1.2e-168
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 85 NPEDSDVSNKSSCSMVT 101
N ++S S K+SCS+ T
Sbjct: 177 NEKNSSNSTKTSCSLRT 193
Score = 39 (18.8 bits), Expect = 3.0e-143, Sum P(6) = 3.0e-143
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 1108 DNAEKFADKFLSNEMAK 1124
D +K ++ LSN+M K
Sbjct: 1423 DGDDKAVERLLSNDMVK 1439
Score = 39 (18.8 bits), Expect = 7.2e-76, Sum P(6) = 7.2e-76
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 818 KDKERERKNHLHGSEEIGK 836
KD +++ N L +E+G+
Sbjct: 1336 KDADKDDDNDLDNGDEVGR 1354
Score = 38 (18.4 bits), Expect = 1.1e-99, Sum P(6) = 1.1e-99
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 322 YLANAYVNQPDNAKVIV 338
YL Y N P+ K++V
Sbjct: 258 YLRQIYANYPELLKLLV 274
>WB|WBGene00012999 [details] [associations]
symbol:rpoa-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
HSSP:P04050 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:Z83219 EMBL:AL032648 EMBL:Z93392
PIR:A88355 PIR:T19606 RefSeq:NP_001022450.1
ProteinModelPortal:G5ED21 SMR:G5ED21 PRIDE:G5ED21
EnsemblMetazoa:Y48E1A.1a GeneID:175015 KEGG:cel:CELE_Y48E1A.1
CTD:175015 WormBase:Y48E1A.1a NextBio:886412 Uniprot:G5ED21
Length = 1737
Score = 675 (242.7 bits), Expect = 3.6e-160, Sum P(5) = 3.6e-160
Identities = 146/299 (48%), Positives = 194/299 (64%)
Query: 756 KNDLVRGVIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDD 813
+ +L+ GV+DKA F +GL H ELYG LLS SRLFT +LQ HGFT GV D
Sbjct: 776 QGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQLLSCFSRLFTTYLQFHGFTLGVAD 835
Query: 814 LLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAM---RGGGDA 870
+L++KD + +RK + S IG +V A L D A P ++K + RG G
Sbjct: 836 ILVVKDADGKRKEAVMESRTIGNQVVKTAFGLPDTAT--PAEIKRTLAATYCNPRGQG-T 892
Query: 871 AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
V D M + K+ + ++ + GLL+ +N + LM SGAKGS VN QIS
Sbjct: 893 DVKMLDFGMKQGIAKY-NDAITKSCVPTGLLRLFPQNALQLMIQSGAKGSAVNAIQISGC 951
Query: 931 LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
LGQ ELEGKR+ ++G+TLPSF +D +PRAGG+I RFLTG+ PQE +FH MAGREGL
Sbjct: 952 LGQIELEGKRMAVTIAGRTLPSFRCFDPSPRAGGYIDQRFLTGMNPQELFFHTMAGREGL 1011
Query: 991 VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISK 1049
+DTAVKTSRSGYLQRC+IK+LE +++ YD +VRD DGS++QF YGEDG+D + +F++K
Sbjct: 1012 IDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVRDHDGSVIQFRYGEDGMDTTKATFLNK 1070
Score = 641 (230.7 bits), Expect = 3.6e-160, Sum P(5) = 3.6e-160
Identities = 141/348 (40%), Positives = 207/348 (59%)
Query: 283 FLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL-ANAYVNQPDNA---KVIV 338
FL +LVPP KFR + E PQT+ L KVL+A + A + + + D + K ++
Sbjct: 354 FLERILVPPKKFRPIRMFKGAQYEDPQTLNLRKVLEATETISAISLIMKGDTSAQLKELI 413
Query: 339 AR--------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMG 384
A ++ LQ N +FD G RD +GI Q+LEKK+GLFR +MG
Sbjct: 414 ANRVRGKTINAQMHDAYLQLQLRANAIFDQDLNKGDRDSIAGIKQILEKKQGLFRMHMMG 473
Query: 385 KRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGA 444
KRVN+ACRSVI+PDPYL ++EIGIP FA +LT+ E V +NV +++ + G HPGA
Sbjct: 474 KRVNFACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNVNEMKGLLRQGPHQHPGA 533
Query: 445 THYLDKLSTMRL----PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDG 500
+++ + P KK R+ + + L+ + ++N + V RH+++G
Sbjct: 534 NFFVEPSGKKTMLGDKPEEKKRRMQMAKTLNAAT---------TENLRQTPKVLRHMKNG 584
Query: 501 DVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSR 560
D++++NRQP+LHKPSI+ H RVL G++ LRM+YA C YNADFDGDEMN H Q +++
Sbjct: 585 DMIMMNRQPSLHKPSILGHRARVLTGQRALRMNYAPCKAYNADFDGDEMNGHLVQSHIAQ 644
Query: 561 AEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
E I N + ++ P + PL LIQDH+VS LL+ +D FLN+++F
Sbjct: 645 TEVREIANVGSNFLVPKDATPLLGLIQDHVVSGVLLSVRDRFLNKEDF 692
Score = 277 (102.6 bits), Expect = 3.6e-160, Sum P(5) = 3.6e-160
Identities = 66/130 (50%), Positives = 82/130 (63%)
Query: 1084 IYKKCSGQLDAS---NAYIMELPDALKDNAEKFAD---KFLSNEMAKQDFLKLVKH-KFV 1136
I KKC +D + LP+ + D E F K + +E ++ LK + K +
Sbjct: 1166 IPKKCPEAVDERFNPTCKLGALPEKMLDEIEGFCTRRVKKVDDEEPPKEVLKRTLYWKGM 1225
Query: 1137 LSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKT 1196
SLA PGE VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL ASK I T
Sbjct: 1226 RSLADPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKSIAT 1285
Query: 1197 PVITCPLLVG 1206
P + ++ G
Sbjct: 1286 PSASIAVIAG 1295
Score = 120 (47.3 bits), Expect = 3.6e-160, Sum P(5) = 3.6e-160
Identities = 21/45 (46%), Positives = 23/45 (51%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCH 45
C TC Q + CPGH GHI L VPV+NP K C CH
Sbjct: 67 CMTCNQYERHCPGHMGHIQLAVPVFNPLLFQFTYNLLKGSCVHCH 111
Score = 81 (33.6 bits), Expect = 3.6e-160, Sum P(5) = 3.6e-160
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 641 EVLPLLPAIWKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLP 685
E+ P P I P+ LWTGKQVIT ++ N I G+P ++ K P
Sbjct: 708 EIPP--PTILYPKRLWTGKQVITTIVKNCIPDGKPLINLDGKAKTP 751
Score = 52 (23.4 bits), Expect = 2.1e-90, Sum P(4) = 2.1e-90
Identities = 21/95 (22%), Positives = 35/95 (36%)
Query: 446 HYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMV---YRHLQDGDV 502
H +DKLS +++ K +G + G + P DN F+ M Y G +
Sbjct: 26 HEIDKLSVLKITQTKTFD-EVGHPI---AGGLYDPILGPDNTFDMCMTCNQYERHCPGHM 81
Query: 503 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 537
+ + P + +LKG + H C
Sbjct: 82 GHIQLAVPVFNPLLFQFTYNLLKGS-CVHCHRLTC 115
Score = 39 (18.8 bits), Expect = 4.4e-24, Sum P(4) = 4.4e-24
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 919 GSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
G ++N + SH+ Q E+ + + + S +P D P G I D ++G+
Sbjct: 630 GDEMNGHLVQSHIAQTEV--REIANVGSNFLVPK----DATPLLG-LIQDHVVSGV 678
Score = 38 (18.4 bits), Expect = 4.4e-24, Sum P(4) = 4.4e-24
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 899 GLLKPTGKNWISLMTTSGAKG 919
G+L+ G I + TSGA+G
Sbjct: 225 GVLRNDGARSILIDFTSGARG 245
>UNIPROTKB|F1LQN7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF05000 SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 PANTHER:PTHR19376:SF11 IPI:IPI00389616
Ensembl:ENSRNOT00000013417 ArrayExpress:F1LQN7 Uniprot:F1LQN7
Length = 1011
Score = 682 (245.1 bits), Expect = 2.1e-125, Sum P(5) = 2.1e-125
Identities = 135/273 (49%), Positives = 181/273 (66%)
Query: 341 WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
W+ LQ VN++FD + GI Q+LEKKEGLFR+ +MGKRV+YA RSVI PD Y
Sbjct: 419 WIRLQSHVNIVFDSDMDKLMLEKYPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMY 478
Query: 401 LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL--DKLSTMRLPP 458
+ NEIGIP FA +LTYP+ VTPWNV +LR ++ING +HPGA+ + D T
Sbjct: 479 INTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAV 538
Query: 459 NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-KMVYRHLQDGDVVLVNRQPTLHKPSIM 517
+ R ++ ++L T I +P +G K+V RH+++GD++L+NRQPTLH+PSI
Sbjct: 539 DATQREAVAKQLLTPSTGIPKP--------QGAKVVCRHVKNGDILLLNRQPTLHRPSIQ 590
Query: 518 AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
AH +L EK LR+HYANC YNADFDGDEMN HFPQ E+ RAEAY + + QY+ P
Sbjct: 591 AHRAHILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPK 650
Query: 578 NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
+G PL LIQDH+VS A +T + F R+++ +
Sbjct: 651 DGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 683
Score = 427 (155.4 bits), Expect = 2.1e-125, Sum P(5) = 2.1e-125
Identities = 96/226 (42%), Positives = 136/226 (60%)
Query: 754 IYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH-GFTCG 810
I + +L+ GV+DKA + YGLVH E+YG T+G +L+ L+RLFT +LQ++ GFT G
Sbjct: 767 IREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLG 826
Query: 811 VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
V+D+L+ + + R+ + S + G R AL L + A D I+ K + A G
Sbjct: 827 VEDILVKPNADVMRQRIIEESTQCGPRAVRAALNLPEAASCDEIQGKWQ--DAHLGKDQR 884
Query: 871 AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
DMK ++N H S+ + + GL + +N + +M SGAKGS VN QIS
Sbjct: 885 DFNMIDMKFKEEVN-HYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCL 943
Query: 931 LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRP 976
LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+ RFLTG+RP
Sbjct: 944 LGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRP 989
Score = 118 (46.6 bits), Expect = 2.1e-125, Sum P(5) = 2.1e-125
Identities = 39/157 (24%), Positives = 66/157 (42%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
C TC Q C GH GHIDL + VYNP + C CH R + V +
Sbjct: 85 CSTCVQDFNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAIHLLVCQ 144
Query: 61 LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
L+++ G + A L+ L E+S+P ++ + T + +N+ +
Sbjct: 145 LKVLDVGALQAVYELERILSRFLEETSDPSAFEIQEE--LEEYTSKILQNNLLGSQGAHV 202
Query: 118 TSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISK 152
++ + +KL + F K + +C +CK + K
Sbjct: 203 KNVCESRSKL-VAHFWKTHMAAKRCPHCKTGRSVVRK 238
Score = 108 (43.1 bits), Expect = 2.1e-125, Sum P(5) = 2.1e-125
Identities = 30/98 (30%), Positives = 51/98 (52%)
Query: 222 KGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHS 280
+G+ A P G + + G L PS ++ + +W+NE F L S + G S
Sbjct: 265 EGAPAAP-GIDEAQMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPS 323
Query: 281 IFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQ 318
+FFL ++VPP ++R ++ GD + + QTV L V++
Sbjct: 324 MFFLDFIVVPPSRYRPINRLGDQMFTNGQTVNLQAVMK 361
Score = 80 (33.2 bits), Expect = 2.1e-125, Sum P(5) = 2.1e-125
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 647 PAIWKPEPLWTGKQVITAVLNHI 669
PAI KP PLWTGKQV++ +L +I
Sbjct: 701 PAILKPFPLWTGKQVVSTLLINI 723
>DICTYBASE|DDB_G0279193 [details] [associations]
symbol:rpb1 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 dictyBase:DDB_G0279193
GO:GO:0006355 GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000030 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
OMA:KVLPWST EMBL:S52651 PIR:A56823 RefSeq:XP_641735.1 STRING:P35084
PRIDE:P35084 EnsemblProtists:DDB0215406 GeneID:8621932
KEGG:ddi:DDB_G0279193 KO:K03006 ProtClustDB:CLSZ2428993
Uniprot:P35084
Length = 1727
Score = 390 (142.3 bits), Expect = 5.1e-103, Sum P(7) = 5.1e-103
Identities = 78/175 (44%), Positives = 113/175 (64%)
Query: 868 GDAAVAYFDMKMTSQLNK--HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQ 925
G + + F+ K+ LNK T+ S + LSE N + M T+G+KGS +N
Sbjct: 716 GKSVIETFEQKVNQVLNKARDTAGSSAQDSLSED-------NNLKAMVTAGSKGSFINIS 768
Query: 926 QISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMA 985
Q+ + +GQQ +EGKR+P +TLP F D+ P + GF+ + +L GL PQE++FH M
Sbjct: 769 QMMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 828
Query: 986 GREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
GREGL+DTAVKTS +GY+QR L+K +E + I YD +VR++ G ++QF YGEDG+D
Sbjct: 829 GREGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGID 883
Score = 286 (105.7 bits), Expect = 5.1e-103, Sum P(7) = 5.1e-103
Identities = 57/126 (45%), Positives = 80/126 (63%)
Query: 482 KDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTY 540
K SD E G V RH+ DGDVV+ NRQP+LHK S+M H ++V+ T R++ + S Y
Sbjct: 425 KVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMP-YSTFRLNLSVTSPY 483
Query: 541 NADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKD 600
NADFDGDEMN+H PQ +RAE I+ Q V P + P+ ++QD ++ + L TK+D
Sbjct: 484 NADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRD 543
Query: 601 TFLNRD 606
F+ +D
Sbjct: 544 CFMEKD 549
Score = 229 (85.7 bits), Expect = 5.1e-103, Sum P(7) = 5.1e-103
Identities = 69/191 (36%), Positives = 97/191 (50%)
Query: 267 DMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYL 323
D + G + + + VL VPP R PS D+ E T L+ +++AN L
Sbjct: 223 DSRAMGINPDWARADWMIATVLPVPPPPVR-PSIMMDTSTRGEDDLTHKLADIVKANREL 281
Query: 324 ANAYVNQPDNAKVIVARWMNLQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGL 377
N A +I LQ V D G A QR I Q L+ KEG
Sbjct: 282 QRQEKNGAP-AHIIAEATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGR 340
Query: 378 FRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIING 437
R LMGKRV+++ R+VI+ DP L+++++G+P AL LTYPE VTP+N+ K+R+ I NG
Sbjct: 341 IRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNG 400
Query: 438 AEIHPGATHYL 448
HPGA + +
Sbjct: 401 PSEHPGAKYII 411
Score = 228 (85.3 bits), Expect = 5.1e-103, Sum P(7) = 5.1e-103
Identities = 50/93 (53%), Positives = 67/93 (72%)
Query: 1113 FADKFLSNE--MAKQDFLKL---VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFH 1167
FA K + E + ++ FL + ++ KF+ +LA PGE VG LA+QS+GEP+TQMTLNTFH
Sbjct: 1045 FASKRVLTEFRLTEKAFLWVCGEIESKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFH 1104
Query: 1168 LAGRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
AG NVTLG+PRL+EI+ IA K +KTP +T
Sbjct: 1105 YAGVSSKNVTLGVPRLKEIINIA-KQVKTPSLT 1136
Score = 99 (39.9 bits), Expect = 5.1e-103, Sum P(7) = 5.1e-103
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFC 44
C+TC CPGHFGHI+L PV++ + +C+ C
Sbjct: 66 CQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHC 109
Score = 69 (29.3 bits), Expect = 5.1e-103, Sum P(7) = 5.1e-103
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 647 PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQD 687
PAI KP+ LWTGKQ+ + ++ I R F K P +
Sbjct: 568 PAILKPKQLWTGKQLFSLIIPDINLIR--FTSTHNDKEPNE 606
Score = 64 (27.6 bits), Expect = 5.1e-103, Sum P(7) = 5.1e-103
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 754 IYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
I + +L+ G++ K A+ ++H V +G +T + + +L GFT G+
Sbjct: 616 IERGELLAGILCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQTQTVVNHWLINRGFTMGI 675
Query: 812 DDLL 815
D +
Sbjct: 676 GDTI 679
Score = 37 (18.1 bits), Expect = 1.7e-17, Sum P(3) = 1.7e-17
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 53 EVEKCVRKLELIIKGD 68
E+EK V +L++I D
Sbjct: 999 EIEKLVARLKIIATAD 1014
>GENEDB_PFALCIPARUM|PF13_0150 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase 3
largest subunit" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 331 (121.6 bits), Expect = 5.9e-101, Sum P(7) = 5.9e-101
Identities = 67/145 (46%), Positives = 95/145 (65%)
Query: 911 LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRF 970
+M SGAKG+ +N Q+ + +GQQ + G+R+ +TLP FH + GF+ + F
Sbjct: 890 IMFNSGAKGALINIAQMIACVGQQNVAGQRIQNGFINRTLPHFHFHCKDSESRGFVQNSF 949
Query: 971 LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIV 1030
TGL P E++FH M+GREGLVDTAVKT+ +GY+QR L+K LE L I YDYSVR D IV
Sbjct: 950 YTGLSPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVRSCDKQIV 1009
Query: 1031 QFCYGEDGVDV----HQTSFISKFD 1051
QF YG+D ++ + +++ +FD
Sbjct: 1010 QFIYGDDALNPSYIDNNNTYLDQFD 1034
Score = 325 (119.5 bits), Expect = 5.9e-101, Sum P(7) = 5.9e-101
Identities = 60/120 (50%), Positives = 84/120 (70%)
Query: 490 GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
G +V RH+ DGD+VL NRQP+LH+ SIM H +++ KT R + CS YNADFDGDEM
Sbjct: 559 GDVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIMDF-KTFRFNECVCSPYNADFDGDEM 617
Query: 550 NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
N+H PQ E +RAEA ++N + + P NG+ + +L QD + ++ ++T KDTFL+RD FC
Sbjct: 618 NLHVPQTEEARAEALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFLDRDTFC 677
Score = 242 (90.2 bits), Expect = 5.9e-101, Sum P(7) = 5.9e-101
Identities = 72/184 (39%), Positives = 102/184 (55%)
Query: 287 VLVPPIKFRLPSKGGDS--VMEHPQTVLLSKVLQAN--IY--LANAY-VNQ-PDNAKVI- 337
+LVPP R PS D E T +LS++ Q N IY N Y NQ N + +
Sbjct: 251 LLVPPNTIR-PSVIIDEHGTAEDDLTCILSEITQLNNTIYNQCTNGYQTNQFLGNVEFLQ 309
Query: 338 --VARWMNLQQ-SVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSV 394
+ R++N +V+ L +N + GICQ L+ KEG FR L GKRV+++ R+V
Sbjct: 310 LQITRFINSDSPAVSQLLATQNISKP---GRGICQRLKGKEGRFRCNLSGKRVDFSSRTV 366
Query: 395 ISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM 454
ISPDP ++++E+ IP A+RLTYPE V +N+ KL+ I NG PGA +Y+ K S
Sbjct: 367 ISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPGA-NYIIKKSKK 425
Query: 455 RLPP 458
+ P
Sbjct: 426 GIDP 429
Score = 204 (76.9 bits), Expect = 5.9e-101, Sum P(7) = 5.9e-101
Identities = 38/73 (52%), Positives = 54/73 (73%)
Query: 1133 HKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASK 1192
+K+ ++ PG+ VG +++QS+GEP TQMTL TFH AG MNVTLG+PR++EI+ AS
Sbjct: 1781 YKYFKYISTPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-ASN 1839
Query: 1193 DIKTPVITCPLLV 1205
I+TP++ PL V
Sbjct: 1840 SIQTPILNIPLEV 1852
Score = 96 (38.9 bits), Expect = 5.9e-101, Sum P(7) = 5.9e-101
Identities = 34/150 (22%), Positives = 68/150 (45%)
Query: 755 YKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
YK++L+ G + K YGL + + S+ A +++ LS+L + + G T G+D
Sbjct: 753 YKSELICGSLGKKVLGSSKYGLFYYLIHHNSSHIALKIMNRLSKLTSRYFSNKGMTIGID 812
Query: 813 DLLILKDKERERKNHL-HGSEEIGKRVHL---EALELEDGAEIDP---IKLKSEIEKAMR 865
D+ + ++K+ L G E++ + L + ++++ G ++ IK+KS ++
Sbjct: 813 DVRPSQTLTEKKKDLLLKGYEKVNNEIILYNEKKMQIQPGCTLEETLEIKVKSILDDLRN 872
Query: 866 GGGDAAVAYFDM--KMTSQLNKHTSSSVIN 893
G Y K N ++IN
Sbjct: 873 DAGKTCNQYLHYLNKPLIMFNSGAKGALIN 902
Score = 90 (36.7 bits), Expect = 5.9e-101, Sum P(7) = 5.9e-101
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVE 55
C+TC ++ C GHFG+I+L PV++ IC +C S+ +++
Sbjct: 88 CETCNKKLINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCSSLLLSKEKID 142
Score = 74 (31.1 bits), Expect = 5.9e-101, Sum P(7) = 5.9e-101
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 643 LPLLPAIWKPEPLWTGKQVITAVL 666
LP+ PAI KP+ LWTGKQ+I+ ++
Sbjct: 692 LPI-PAILKPKELWTGKQLISVLI 714
Score = 57 (25.1 bits), Expect = 9.2e-86, Sum P(7) = 9.2e-86
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 1065 NKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAK 1124
++ CD + + + E+ +KC+ + + NA I + + DN EK + +E
Sbjct: 1987 DEICDDMDEYYNVSQGTELYERKCNSKEENKNA-IRVKKEEIDDNLEKEENIIYVSEKDS 2045
Query: 1125 QDFLKLVKHK 1134
+ LK K K
Sbjct: 2046 VNQLKSEKKK 2055
Score = 49 (22.3 bits), Expect = 2.2e-51, Sum P(6) = 2.2e-51
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 800 VFLQMHGFTCGVDDLLILKDKERER 824
+F QM G+ DLLI DK+ +R
Sbjct: 1948 IFFQMESLKKGLLDLLIYGDKDIKR 1972
Score = 41 (19.5 bits), Expect = 5.2e-14, Sum P(3) = 5.2e-14
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 69 IIAAKSLDL-DLPSESSNP-EDSDVSNKSSCSMVTPRGNYDNVRN 111
IIA K + + + +P E+ + ++++ M+T N DN N
Sbjct: 1501 IIAKKIIKIKNKEKRKYHPKEEKENFDRNNYKMITDNNNNDNNNN 1545
Score = 38 (18.4 bits), Expect = 1.5e-33, Sum P(4) = 1.5e-33
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 570 NNQYVRPSNGDPLRSLIQDH--IVSAA-LLTKKDTFLNRDE 607
NN + P + + D+ +V L+ KK FLN E
Sbjct: 1407 NNVILPPKEYHSIFHFVNDYRNVVEIKNLMDKKKIFLNNSE 1447
>UNIPROTKB|Q8IE49 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed
RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 331 (121.6 bits), Expect = 5.9e-101, Sum P(7) = 5.9e-101
Identities = 67/145 (46%), Positives = 95/145 (65%)
Query: 911 LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRF 970
+M SGAKG+ +N Q+ + +GQQ + G+R+ +TLP FH + GF+ + F
Sbjct: 890 IMFNSGAKGALINIAQMIACVGQQNVAGQRIQNGFINRTLPHFHFHCKDSESRGFVQNSF 949
Query: 971 LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIV 1030
TGL P E++FH M+GREGLVDTAVKT+ +GY+QR L+K LE L I YDYSVR D IV
Sbjct: 950 YTGLSPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVRSCDKQIV 1009
Query: 1031 QFCYGEDGVDV----HQTSFISKFD 1051
QF YG+D ++ + +++ +FD
Sbjct: 1010 QFIYGDDALNPSYIDNNNTYLDQFD 1034
Score = 325 (119.5 bits), Expect = 5.9e-101, Sum P(7) = 5.9e-101
Identities = 60/120 (50%), Positives = 84/120 (70%)
Query: 490 GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
G +V RH+ DGD+VL NRQP+LH+ SIM H +++ KT R + CS YNADFDGDEM
Sbjct: 559 GDVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIMDF-KTFRFNECVCSPYNADFDGDEM 617
Query: 550 NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
N+H PQ E +RAEA ++N + + P NG+ + +L QD + ++ ++T KDTFL+RD FC
Sbjct: 618 NLHVPQTEEARAEALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFLDRDTFC 677
Score = 242 (90.2 bits), Expect = 5.9e-101, Sum P(7) = 5.9e-101
Identities = 72/184 (39%), Positives = 102/184 (55%)
Query: 287 VLVPPIKFRLPSKGGDS--VMEHPQTVLLSKVLQAN--IY--LANAY-VNQ-PDNAKVI- 337
+LVPP R PS D E T +LS++ Q N IY N Y NQ N + +
Sbjct: 251 LLVPPNTIR-PSVIIDEHGTAEDDLTCILSEITQLNNTIYNQCTNGYQTNQFLGNVEFLQ 309
Query: 338 --VARWMNLQQ-SVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSV 394
+ R++N +V+ L +N + GICQ L+ KEG FR L GKRV+++ R+V
Sbjct: 310 LQITRFINSDSPAVSQLLATQNISKP---GRGICQRLKGKEGRFRCNLSGKRVDFSSRTV 366
Query: 395 ISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM 454
ISPDP ++++E+ IP A+RLTYPE V +N+ KL+ I NG PGA +Y+ K S
Sbjct: 367 ISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPGA-NYIIKKSKK 425
Query: 455 RLPP 458
+ P
Sbjct: 426 GIDP 429
Score = 204 (76.9 bits), Expect = 5.9e-101, Sum P(7) = 5.9e-101
Identities = 38/73 (52%), Positives = 54/73 (73%)
Query: 1133 HKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASK 1192
+K+ ++ PG+ VG +++QS+GEP TQMTL TFH AG MNVTLG+PR++EI+ AS
Sbjct: 1781 YKYFKYISTPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-ASN 1839
Query: 1193 DIKTPVITCPLLV 1205
I+TP++ PL V
Sbjct: 1840 SIQTPILNIPLEV 1852
Score = 96 (38.9 bits), Expect = 5.9e-101, Sum P(7) = 5.9e-101
Identities = 34/150 (22%), Positives = 68/150 (45%)
Query: 755 YKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
YK++L+ G + K YGL + + S+ A +++ LS+L + + G T G+D
Sbjct: 753 YKSELICGSLGKKVLGSSKYGLFYYLIHHNSSHIALKIMNRLSKLTSRYFSNKGMTIGID 812
Query: 813 DLLILKDKERERKNHL-HGSEEIGKRVHL---EALELEDGAEIDP---IKLKSEIEKAMR 865
D+ + ++K+ L G E++ + L + ++++ G ++ IK+KS ++
Sbjct: 813 DVRPSQTLTEKKKDLLLKGYEKVNNEIILYNEKKMQIQPGCTLEETLEIKVKSILDDLRN 872
Query: 866 GGGDAAVAYFDM--KMTSQLNKHTSSSVIN 893
G Y K N ++IN
Sbjct: 873 DAGKTCNQYLHYLNKPLIMFNSGAKGALIN 902
Score = 90 (36.7 bits), Expect = 5.9e-101, Sum P(7) = 5.9e-101
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVE 55
C+TC ++ C GHFG+I+L PV++ IC +C S+ +++
Sbjct: 88 CETCNKKLINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCSSLLLSKEKID 142
Score = 74 (31.1 bits), Expect = 5.9e-101, Sum P(7) = 5.9e-101
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 643 LPLLPAIWKPEPLWTGKQVITAVL 666
LP+ PAI KP+ LWTGKQ+I+ ++
Sbjct: 692 LPI-PAILKPKELWTGKQLISVLI 714
Score = 57 (25.1 bits), Expect = 9.2e-86, Sum P(7) = 9.2e-86
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 1065 NKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAK 1124
++ CD + + + E+ +KC+ + + NA I + + DN EK + +E
Sbjct: 1987 DEICDDMDEYYNVSQGTELYERKCNSKEENKNA-IRVKKEEIDDNLEKEENIIYVSEKDS 2045
Query: 1125 QDFLKLVKHK 1134
+ LK K K
Sbjct: 2046 VNQLKSEKKK 2055
Score = 49 (22.3 bits), Expect = 2.2e-51, Sum P(6) = 2.2e-51
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 800 VFLQMHGFTCGVDDLLILKDKERER 824
+F QM G+ DLLI DK+ +R
Sbjct: 1948 IFFQMESLKKGLLDLLIYGDKDIKR 1972
Score = 41 (19.5 bits), Expect = 5.2e-14, Sum P(3) = 5.2e-14
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 69 IIAAKSLDL-DLPSESSNP-EDSDVSNKSSCSMVTPRGNYDNVRN 111
IIA K + + + +P E+ + ++++ M+T N DN N
Sbjct: 1501 IIAKKIIKIKNKEKRKYHPKEEKENFDRNNYKMITDNNNNDNNNN 1545
Score = 38 (18.4 bits), Expect = 1.5e-33, Sum P(4) = 1.5e-33
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 570 NNQYVRPSNGDPLRSLIQDH--IVSAA-LLTKKDTFLNRDE 607
NN + P + + D+ +V L+ KK FLN E
Sbjct: 1407 NNVILPPKEYHSIFHFVNDYRNVVEIKNLMDKKKIFLNNSE 1447
>ZFIN|ZDB-GENE-050208-103 [details] [associations]
symbol:polr3a "polymerase (RNA) III (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
ZFIN:ZDB-GENE-050208-103 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
KO:K03018 GO:GO:0032549 GeneTree:ENSGT00700000104490
PANTHER:PTHR19376:SF15 EMBL:CABZ01084340 EMBL:CABZ01084341
EMBL:CABZ01084342 EMBL:CABZ01084343 EMBL:CABZ01084344
EMBL:CABZ01084345 EMBL:CABZ01084346 IPI:IPI00960980
RefSeq:XP_003199716.1 UniGene:Dr.109694 Ensembl:ENSDART00000105273
GeneID:572258 KEGG:dre:572258 NextBio:20890901 Bgee:E7F5P2
Uniprot:E7F5P2
Length = 1390
Score = 344 (126.2 bits), Expect = 2.1e-100, Sum P(7) = 2.1e-100
Identities = 71/152 (46%), Positives = 95/152 (62%)
Query: 890 SVINELLSEGLLKPTGK-NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGK 948
SVI + L+ K N +M G+KGS +N Q+ + +GQQ + G RVP +
Sbjct: 757 SVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENR 816
Query: 949 TLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1008
+LP F P A GF+ D F +GL P E++FH MAGREGLVDTAVKT+ +GY+QR L+
Sbjct: 817 SLPHFQKHSKLPAAKGFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLV 876
Query: 1009 KNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
K+LE L YD +VR + G I+QF YG DG+D
Sbjct: 877 KSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD 908
Score = 332 (121.9 bits), Expect = 2.1e-100, Sum P(7) = 2.1e-100
Identities = 65/121 (53%), Positives = 83/121 (68%)
Query: 490 GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
G +V RH+ DGD+VL NRQP+LHK SIMAH+ RV K +T R + C+ YNADFDGDEM
Sbjct: 447 GDVVERHMIDGDIVLFNRQPSLHKLSIMAHIARV-KPHRTFRFNECVCTPYNADFDGDEM 505
Query: 550 NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
N+H PQ E ++AEA ++ V P NG+PL + IQD + A LLT KDTF +R + C
Sbjct: 506 NLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRTKAC 565
Query: 610 Q 610
Q
Sbjct: 566 Q 566
Score = 215 (80.7 bits), Expect = 2.1e-100, Sum P(7) = 2.1e-100
Identities = 42/89 (47%), Positives = 61/89 (68%)
Query: 1115 DKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEM 1174
D+ ++ K FL+ + K++ + +PG VG L +QS+GEP TQMTL TFH AG M
Sbjct: 1004 DRITPTQLEK--FLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061
Query: 1175 NVTLGIPRLQEILTIASKDIKTPVITCPL 1203
N+TLG+PR++EI+ ASK+I TP+I+ L
Sbjct: 1062 NITLGVPRIKEIIN-ASKNISTPIISANL 1089
Score = 211 (79.3 bits), Expect = 2.1e-100, Sum P(7) = 2.1e-100
Identities = 56/166 (33%), Positives = 89/166 (53%)
Query: 287 VLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMN 343
+LVPP+ R PS D E T+ L++++ N + + ++I+ W
Sbjct: 255 LLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGA-KTQMIMEDWDF 312
Query: 344 LQQSVNVLFDGKNAAGQRDMAS-----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
LQ + + + + +MA G Q L+ K+G FR L GKRV+++ R+VISPD
Sbjct: 313 LQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPD 372
Query: 399 PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGA 444
P L ++E+ +P + A LTYPE+V N+ +R + NG E+HPGA
Sbjct: 373 PNLRIDEVAVPVHVAKILTYPEKVNKANIELMRKLVRNGPEVHPGA 418
Score = 92 (37.4 bits), Expect = 2.1e-100, Sum P(7) = 2.1e-100
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRRE 53
C+TCG+ C GH+G++DL +P ++ + IC C H ++ E
Sbjct: 69 CETCGKNLADCLGHYGYLDLELPCFHIGYFKAIVGILQMICKTCSHILLTKEE 121
Score = 72 (30.4 bits), Expect = 2.1e-100, Sum P(7) = 2.1e-100
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 633 VLISRSEQEVLPLL-PAIWKPEPLWTGKQVITAVL 666
+L+ + E+ + L PAI KP LWTGKQ+ + +L
Sbjct: 571 ILVGKDEKIKISLPHPAILKPIRLWTGKQIFSLIL 605
Score = 69 (29.3 bits), Expect = 2.1e-100, Sum P(7) = 2.1e-100
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 754 IYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
I+ ++L+ G +DK + + + +G A +S L+RL V+L GF+ G
Sbjct: 640 IHNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQQEAADAMSRLARLAPVYLSNRGFSIG 699
Query: 811 VDDL 814
+ D+
Sbjct: 700 IGDV 703
Score = 46 (21.3 bits), Expect = 3.0e-16, Sum P(3) = 3.0e-16
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 557 EVSRAEAYNIVNANNQYVRPS-NGDPLRSLIQDHIVSAALLTKKDTF 602
EVSRA + + Q + GD +RS++ H V+ + T +T+
Sbjct: 1206 EVSRAVIHIDEQSGKQKFKLLVEGDNMRSVMATHGVNGSKTTSNNTY 1252
Score = 45 (20.9 bits), Expect = 1.4e-51, Sum P(6) = 1.4e-51
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 905 GKNWISLMTTSGAKGSKV---NFQQISSHLG 932
G N S+M T G GSK N ++ LG
Sbjct: 1229 GDNMRSVMATHGVNGSKTTSNNTYEVEKTLG 1259
Score = 39 (18.8 bits), Expect = 1.3e-47, Sum P(5) = 1.3e-47
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 557 EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
E R +A+ V + N Y + ++ PL+ + DH
Sbjct: 26 EQMRQQAHIQVVSKNLYSQDTSHKPLQYGVLDH 58
Score = 38 (18.4 bits), Expect = 1.4e-52, Sum P(6) = 1.4e-52
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 493 VYRHLQDGDVVLVNRQPTLHKPS 515
++R + D DV L+ P KP+
Sbjct: 226 LFRRIPDKDVPLLLMNPESGKPA 248
Score = 37 (18.1 bits), Expect = 1.5e-32, Sum P(4) = 1.5e-32
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 570 NNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
N + V G+P S + + S +++ +KD +D F +
Sbjct: 927 NIRAVYSCTGEPALSRNELLLTSDSIMKRKDFLCCKDTFLE 967
>POMBASE|SPBC28F2.12 [details] [associations]
symbol:rpb1 "RNA polymerase II large subunit Rpb1"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IC] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IC] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 PomBase:SPBC28F2.12 GO:GO:0005829
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 PDB:3H0G PDBsum:3H0G
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X56564 PIR:S26849
RefSeq:NP_595673.1 ProteinModelPortal:P36594 IntAct:P36594
MINT:MINT-1214221 STRING:P36594 EnsemblFungi:SPBC28F2.12.1
GeneID:2540292 KEGG:spo:SPBC28F2.12 OrthoDB:EOG4J14H5
EvolutionaryTrace:P36594 NextBio:20801422 Uniprot:P36594
Length = 1752
Score = 368 (134.6 bits), Expect = 2.3e-100, Sum P(7) = 2.3e-100
Identities = 79/179 (44%), Positives = 118/179 (65%)
Query: 875 FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
F+ K++ LN+ ++ + +E LK + N + M +G+KGS +N Q+S+ +GQQ
Sbjct: 720 FEAKVSRILNQARDNAGRS---AEHSLKDS--NNVKQMVAAGSKGSFINISQMSACVGQQ 774
Query: 935 ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
+EGKR+P +TLP F D +P + GFI + +L GL PQE++FH MAGREGL+DTA
Sbjct: 775 IVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTA 834
Query: 995 VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDAL 1053
VKT+ +GY+QR L+K +E + + YD +VR+A G I+QF YGEDG+D + FD+L
Sbjct: 835 VKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEY-QVFDSL 892
Score = 271 (100.5 bits), Expect = 2.3e-100, Sum P(7) = 2.3e-100
Identities = 53/117 (45%), Positives = 73/117 (62%)
Query: 490 GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
G V RH++DGDVV+ NRQP+LHK S+M H +RV+ T R++ + S YNADFDGDEM
Sbjct: 435 GWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMP-YSTFRLNLSVTSPYNADFDGDEM 493
Query: 550 NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRD 606
N+H PQ E +RAE I Q V P + P+ ++QD + + +D FL R+
Sbjct: 494 NMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTRN 550
Score = 229 (85.7 bits), Expect = 2.3e-100, Sum P(7) = 2.3e-100
Identities = 97/332 (29%), Positives = 149/332 (44%)
Query: 129 LLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEE 188
L + KI C NC S P F + + D + L N+ +T +
Sbjct: 98 LSKIKKILECVCWNCGKLKIDSSNPKFN----DTQRYRDPKNRLNAVWNVCKTKMVCDTG 153
Query: 189 KDLGASS-DVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLL-PSD 246
G+ + D+ P + +G Q T + + G+ G K + DL LL P +
Sbjct: 154 LSAGSDNFDLSNPSANMGHGGCGAAQPTIRKDGLRLWGSWKRG-KDESDLPEKRLLSPLE 212
Query: 247 VKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLP-SKGGDSV 304
V I + +E D+ G ++ + + VL VPP R S G S
Sbjct: 213 VHTIFTHI-SSE--------DLAHLGLNEQYARPDWMIITVLPVPPPSVRPSISVDGTSR 263
Query: 305 MEHPQTVLLSKVLQANIYLANAYVNQPDNAKV-IVARWMNLQQSVNVLFDGKNAAGQRD- 362
E T LS +++AN AN + + A IV+ + L Q + AGQ
Sbjct: 264 GEDDLTHKLSDIIKAN---ANVRRCEQEGAPAHIVSEYEQLLQFHVATYMDNEIAGQPQA 320
Query: 363 -MASG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRL 416
SG I L+ KEG R LMGKRV+++ R+VI+ DP L+++E+G+P A L
Sbjct: 321 LQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDELGVPRSIAKTL 380
Query: 417 TYPERVTPWNVVKLRDSIINGAEIHPGATHYL 448
TYPE VTP+N+ +L++ + NG + HPGA + +
Sbjct: 381 TYPETVTPYNIYQLQELVRNGPDEHPGAKYII 412
Score = 222 (83.2 bits), Expect = 2.3e-100, Sum P(7) = 2.3e-100
Identities = 46/85 (54%), Positives = 63/85 (74%)
Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
N++A + + V+ +F ++ PGE VG LA+QS+GEP+TQMTLNTFH AG NVTLG
Sbjct: 1041 NKVAFEWIMGEVEARFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLG 1100
Query: 1180 IPRLQEILTIASKDIKTPVITCPLL 1204
+PRL+EIL +A K+IKTP +T L+
Sbjct: 1101 VPRLKEILNVA-KNIKTPSLTIYLM 1124
Score = 105 (42.0 bits), Expect = 2.3e-100, Sum P(7) = 2.3e-100
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFK 48
C+TCG+ CPGHFGHI+L PV++ + +C+ C K
Sbjct: 69 CQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLK 116
Score = 79 (32.9 bits), Expect = 2.3e-100, Sum P(7) = 2.3e-100
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 754 IYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
I +++ GV+DK + GLVHT+ + G + + R+ +L +GF+ G+
Sbjct: 613 IENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNYWLLHNGFSIGI 672
Query: 812 DDLLILKDKERE 823
D + D +E
Sbjct: 673 GDTIADADTMKE 684
Score = 68 (29.0 bits), Expect = 2.3e-100, Sum P(7) = 2.3e-100
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 642 VLPLLPAIWKPEPLWTGKQVITAVL 666
+LP P I KP+ LWTGKQ+++ ++
Sbjct: 565 ILPP-PVILKPKVLWTGKQILSLII 588
>DICTYBASE|DDB_G0277199 [details] [associations]
symbol:rpc1 "RNA polymerase III, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0277199 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000019 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
KO:K03018 eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:XP_642724.1 ProteinModelPortal:Q86AQ5
STRING:Q86AQ5 EnsemblProtists:DDB0216293 GeneID:8620917
KEGG:ddi:DDB_G0277199 ProtClustDB:CLSZ2729139 Uniprot:Q86AQ5
Length = 1450
Score = 336 (123.3 bits), Expect = 3.1e-100, Sum P(7) = 3.1e-100
Identities = 64/130 (49%), Positives = 89/130 (68%)
Query: 911 LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRF 970
+M G+KGS +N Q+ +GQQ + G R+P + +T P F + P++ GF+ + F
Sbjct: 767 IMGLCGSKGSNINIAQMICCVGQQIVNGTRIPNGFTNRTTPHFKHFAKNPKSKGFVSNSF 826
Query: 971 LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIV 1030
TG+ P E++FH M GREGLVDTAVKT+ +GY+QR L+K LE L YDY+VRD+ G IV
Sbjct: 827 YTGMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDYTVRDSIGGIV 886
Query: 1031 QFCYGEDGVD 1040
QF YG+DG+D
Sbjct: 887 QFIYGDDGLD 896
Score = 304 (112.1 bits), Expect = 3.1e-100, Sum P(7) = 3.1e-100
Identities = 57/119 (47%), Positives = 81/119 (68%)
Query: 490 GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
G +V RH+ DGD++L NRQP+LHK SIM+H RV+ +TLR + C+ YNADFDGDEM
Sbjct: 439 GDIVERHIIDGDIMLFNRQPSLHKLSIMSHKARVMPW-RTLRFNECVCTPYNADFDGDEM 497
Query: 550 NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
N+H PQ E +RAEA ++ N + P NG+PL + QD + ++ L++++D F R F
Sbjct: 498 NIHLPQTEEARAEATILMGVTNNLITPRNGEPLVAATQDFLTASYLISRRDAFYERYRF 556
Score = 263 (97.6 bits), Expect = 3.1e-100, Sum P(7) = 3.1e-100
Identities = 62/172 (36%), Positives = 97/172 (56%)
Query: 284 LGVVLVPPIKFR--LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARW 341
L +LVPP+ R +P GG E T+ LS++L N ++ + V++ + + I+ W
Sbjct: 246 LTYMLVPPVSIRPSVPMDGGSGTNEDDLTMKLSEILHINEHI-RSNVDRAEMS-AIMEDW 303
Query: 342 MNLQQSVNVLFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
LQ S + + M G+ Q L+ K G FR L GKRV+++ R+VIS
Sbjct: 304 DYLQASCAIYINSDVPGLPLQMKPTKAVRGLSQRLKGKTGRFRGNLSGKRVDFSGRTVIS 363
Query: 397 PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL 448
PDP L ++E+ +P AL +TYPERVT +N+ +L+ +ING + HPGA + +
Sbjct: 364 PDPNLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYVINGPDRHPGANYII 415
Score = 213 (80.0 bits), Expect = 3.1e-100, Sum P(7) = 3.1e-100
Identities = 46/104 (44%), Positives = 68/104 (65%)
Query: 1106 LKDNAEKFADKFLSNEMAK------QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPST 1159
LK E+FA++ + N++ + + FL + K+ + +PG VG + +QS+GEP T
Sbjct: 1057 LKLLGERFANEHVVNQIHRITKTQIELFLDICLDKYSRARIEPGTAVGAIGAQSIGEPGT 1116
Query: 1160 QMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
QMTL TFH AG MNVTLG+PR++EI+ A+K+I TP+IT L
Sbjct: 1117 QMTLKTFHFAGVASMNVTLGVPRIKEIIN-AAKNISTPIITASL 1159
Score = 85 (35.0 bits), Expect = 3.1e-100, Sum P(7) = 3.1e-100
Identities = 23/75 (30%), Positives = 34/75 (45%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
C TCG C GHFG+I L +PV++ + IC C + + + +RK
Sbjct: 67 CTTCGLSIVDCVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCSTILLNEEKKQYYLRK 126
Query: 61 LELIIKGDIIAAKSL 75
+ K D + KSL
Sbjct: 127 MRNK-KMDNLQRKSL 140
Score = 70 (29.7 bits), Expect = 3.1e-100, Sum P(7) = 3.1e-100
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 755 YKN-DLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
++N +L+ G IDK+ L H + + A ++ L++L FL GF+ G
Sbjct: 628 FRNSELMCGSIDKSIIGGGNKNSLFHILMRDFSPTIAANCMTRLAKLCARFLGDQGFSIG 687
Query: 811 VDDLLILKDKERERK 825
+ D+ +D +R+++
Sbjct: 688 IPDIKPAEDLDRKKR 702
Score = 65 (27.9 bits), Expect = 3.1e-100, Sum P(7) = 3.1e-100
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 647 PAIWKPEPLWTGKQVITAVL 666
PAI KP LWTGKQ+ +L
Sbjct: 575 PAILKPVELWTGKQIFEVLL 594
Score = 37 (18.1 bits), Expect = 1.3e-47, Sum P(5) = 1.3e-47
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 635 ISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQD 687
IS + E++ + P I +PE L ++T +L RP ++ G +D
Sbjct: 224 ISYQDIEIMNMDPVIGRPERL-----ILTYMLVPPVSIRPSVPMDGGSGTNED 271
>ASPGD|ASPL0000054301 [details] [associations]
symbol:AN0809 species:162425 "Emericella nidulans"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 EMBL:BN001308 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACD01000013 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
RefSeq:XP_658413.1 STRING:Q5BF71 EnsemblFungi:CADANIAT00001852
GeneID:2876587 KEGG:ani:AN0809.2 Uniprot:Q5BF71
Length = 1745
Score = 347 (127.2 bits), Expect = 5.7e-100, Sum P(7) = 5.7e-100
Identities = 65/129 (50%), Positives = 95/129 (73%)
Query: 912 MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
M+ SG+KGS +N Q+++ +GQQ +EGKR+ +TLP F D++P + GF+ + +L
Sbjct: 766 MSRSGSKGSIINISQMTAVVGQQMVEGKRIAFGFKYRTLPHFTKDDYSPESRGFVENSYL 825
Query: 972 TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD +VR++ G I+Q
Sbjct: 826 RGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIIQ 885
Query: 1032 FCYGEDGVD 1040
F YGEDG+D
Sbjct: 886 FIYGEDGLD 894
Score = 273 (101.2 bits), Expect = 5.7e-100, Sum P(7) = 5.7e-100
Identities = 54/118 (45%), Positives = 72/118 (61%)
Query: 490 GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
G V RHL DGDV+L NRQP+LHK S+M H VRV+ T R++ + S YNADFDGDEM
Sbjct: 443 GWKVERHLMDGDVILFNRQPSLHKESMMGHRVRVMP-YSTFRLNLSVTSPYNADFDGDEM 501
Query: 550 NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDE 607
N+H PQ E SRAE + V P PL ++QD + + ++D FL +++
Sbjct: 502 NLHVPQSEESRAELQQLALVPQNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQ 559
Score = 234 (87.4 bits), Expect = 5.7e-100, Sum P(7) = 5.7e-100
Identities = 46/90 (51%), Positives = 66/90 (73%)
Query: 1111 EKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
++ ++ N++A Q L ++ +F + A PGE VG+LA+QS+GEP+TQMTLNTFH AG
Sbjct: 1049 KRLVTQYSMNKLAFQHVLGAIESRFAKAAAAPGEMVGVLAAQSIGEPATQMTLNTFHFAG 1108
Query: 1171 RGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
NVTLG+PRL+EIL +A+ +IKTP +T
Sbjct: 1109 VSSKNVTLGVPRLKEILNVAT-NIKTPSMT 1137
Score = 220 (82.5 bits), Expect = 5.7e-100, Sum P(7) = 5.7e-100
Identities = 66/175 (37%), Positives = 93/175 (53%)
Query: 284 LGVVLVPPIKFRLPSK--GGDSVMEHPQTVLLSKVLQANIYLANAYVN--QPDNAKVIVA 339
L V+ VPP R PS GG + + + L K+ A I AN V + + A V
Sbjct: 247 LTVLPVPPPPVR-PSVVVGGSTSGQRGEDDLTYKL--AEIVRANQNVQRCEQEGAPEHVV 303
Query: 340 RWMN--LQQSVNVLFD----GKNAAGQRDM--ASGICQLLEKKEGLFRQKLMGKRVNYAC 391
R LQ + D G+ A Q+ I L+ KEG RQ LMGKRV+++
Sbjct: 304 REFESLLQYHIATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDFSA 363
Query: 392 RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATH 446
R+VI+ DP L+++E+G+P A LTYPE VTP+N+ KL+ ++NG HPGA +
Sbjct: 364 RTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIEKLQQLVMNGPNEHPGARY 418
Score = 121 (47.7 bits), Expect = 5.7e-100, Sum P(7) = 5.7e-100
Identities = 35/122 (28%), Positives = 54/122 (44%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVE--KCV 58
C+TC + Q CPGHFGHI+L PV++ + +C C KA+ + + +
Sbjct: 69 CETCEEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKANTSDPKFLDAL 128
Query: 59 RKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWT 118
R + + D I S D+ L E+ P + D K S V G N + +E
Sbjct: 129 RIRDPKRRFDHIWRLSKDI-LICEADPPPEDDEYGKESSKPVRLHGGCGNAQPTVRKEGI 187
Query: 119 SL 120
+L
Sbjct: 188 TL 189
Score = 75 (31.5 bits), Expect = 5.7e-100, Sum P(7) = 5.7e-100
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 642 VLPLLPAIWKPEPLWTGKQVITAV 665
V+P PAI+KP P WTGKQ+I+ V
Sbjct: 573 VIPP-PAIFKPRPRWTGKQMISMV 595
Score = 70 (29.7 bits), Expect = 5.7e-100, Sum P(7) = 5.7e-100
Identities = 35/153 (22%), Positives = 66/153 (43%)
Query: 754 IYKNDLVRGVIDK--AQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
I++ L+ G+++K + G++H + YG++ A + + +L +GF+ G+
Sbjct: 627 IHEGQLMYGMLNKKIVGASGGGVIHIIFNEYGADAAVAFFNGAQAIVNYWLLHNGFSIGI 686
Query: 812 DDLL-----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRG 866
D + I +E RK L EEI LE G + +S++ A+
Sbjct: 687 GDTIPNDQTIQAIEECVRKRKLE-VEEITATATQNKLEPLPGMNVRET-FESKVSVALNT 744
Query: 867 GGDAA-----VAYFDMKMTSQLNKHTSS-SVIN 893
D A + D+ Q+++ S S+IN
Sbjct: 745 ARDEAGTATEKSLKDLNNAVQMSRSGSKGSIIN 777
Score = 42 (19.8 bits), Expect = 9.9e-45, Sum P(3) = 9.9e-45
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 54 VEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPR 103
+E+CVRK +L ++ +I A + + P N ++ +K S ++ T R
Sbjct: 699 IEECVRKRKLEVE-EITATATQNKLEPLPGMNVRET-FESKVSVALNTAR 746
Score = 40 (19.1 bits), Expect = 1.3e-57, Sum P(6) = 1.3e-57
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 360 QRDMASGICQLLEKKEGLFRQKLMGKRV 387
+R + G L ++ L ++ +MG RV
Sbjct: 447 ERHLMDGDVILFNRQPSLHKESMMGHRV 474
Score = 37 (18.1 bits), Expect = 2.7e-91, Sum P(7) = 2.7e-91
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 129 LLQFLKIETTKCGNCKAKNPRISKPTF 155
L + K+ T C NC S P F
Sbjct: 98 LTKIKKLLETVCHNCGKIKANTSDPKF 124
>UNIPROTKB|E9PTB6 [details] [associations]
symbol:Polr3a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0032728
"positive regulation of interferon-beta production" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:1305574 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
IPI:IPI00766228 PRIDE:E9PTB6 Ensembl:ENSRNOT00000013501
Uniprot:E9PTB6
Length = 1342
Score = 337 (123.7 bits), Expect = 9.4e-100, Sum P(7) = 9.4e-100
Identities = 70/152 (46%), Positives = 95/152 (62%)
Query: 890 SVINELLSEGLLKPTGKNWISL-MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGK 948
SVI + L+ K+ L M G+KGS +N Q+ + +GQQ + G RVP +
Sbjct: 757 SVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENR 816
Query: 949 TLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1008
+LP F P A GF+ + F +GL P E++FH MAGREGLVDTAVKT+ +GY+QR L+
Sbjct: 817 SLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLV 876
Query: 1009 KNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
K+LE L YD +VR + G I+QF YG DG+D
Sbjct: 877 KSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD 908
Score = 329 (120.9 bits), Expect = 9.4e-100, Sum P(7) = 9.4e-100
Identities = 66/121 (54%), Positives = 83/121 (68%)
Query: 490 GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
G +V RHL DGDVVL NRQP+LHK SIMAH+ +V K +T R + C+ YNADFDGDEM
Sbjct: 447 GDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKV-KPHRTFRFNECVCTPYNADFDGDEM 505
Query: 550 NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
N+H PQ E ++AEA ++ V P NG+PL + IQD + A LLT KDTF +R + C
Sbjct: 506 NLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKAC 565
Query: 610 Q 610
Q
Sbjct: 566 Q 566
Score = 216 (81.1 bits), Expect = 9.4e-100, Sum P(7) = 9.4e-100
Identities = 43/89 (48%), Positives = 60/89 (67%)
Query: 1115 DKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEM 1174
D+ ++ K FL+ + K++ + +PG VG L +QS+GEP TQMTL TFH AG M
Sbjct: 1004 DRITRTQIEK--FLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061
Query: 1175 NVTLGIPRLQEILTIASKDIKTPVITCPL 1203
N+TLG+PR++EI+ ASK I TP+IT L
Sbjct: 1062 NITLGVPRIKEIIN-ASKAISTPIITAQL 1089
Score = 208 (78.3 bits), Expect = 9.4e-100, Sum P(7) = 9.4e-100
Identities = 59/178 (33%), Positives = 95/178 (53%)
Query: 276 KAGH-SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQP 331
+AG S L +LVPP+ R PS D E T+ L++++ N + ++
Sbjct: 243 EAGKPSDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA 301
Query: 332 DNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS-----GICQLLEKKEGLFRQKLMGKR 386
++I+ W LQ + + + + +MA G Q L+ K+G FR L GKR
Sbjct: 302 -KTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKR 360
Query: 387 VNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGA 444
V+++ R+VISPDP L ++E+ +P + A LT+PE+V N+ LR + NG ++HPGA
Sbjct: 361 VDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGA 418
Score = 97 (39.2 bits), Expect = 9.4e-100, Sum P(7) = 9.4e-100
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEK 56
C+TCG+ C GH+G+IDL +P ++ + IC C H S+ E ++
Sbjct: 69 CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKQQ 124
Score = 72 (30.4 bits), Expect = 9.4e-100, Sum P(7) = 9.4e-100
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 754 IYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
I ++L+ G +DK + + + +G N A +S L+RL V+L GF+ G
Sbjct: 640 IQNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIG 699
Query: 811 VDDL 814
+ D+
Sbjct: 700 IGDV 703
Score = 69 (29.3 bits), Expect = 9.4e-100, Sum P(7) = 9.4e-100
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 633 VLISRSEQEVLPLLP-AIWKPEPLWTGKQVITAVL 666
+L+ + E+ + L P I KP LWTGKQ+ + +L
Sbjct: 571 ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVIL 605
Score = 43 (20.2 bits), Expect = 3.4e-16, Sum P(3) = 3.4e-16
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 557 EVSRAEAY-NIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTF 602
EVSRA + + + ++ GD LR+++ H V T +T+
Sbjct: 1206 EVSRAVIHIDEQSGKEKFKLLVEGDNLRAVMATHGVKGTRTTSNNTY 1252
Score = 40 (19.1 bits), Expect = 4.7e-51, Sum P(6) = 4.7e-51
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 905 GKNWISLMTTSGAKGSKV---NFQQISSHLG 932
G N ++M T G KG++ N ++ LG
Sbjct: 1229 GDNLRAVMATHGVKGTRTTSNNTYEVEKTLG 1259
Score = 40 (19.1 bits), Expect = 8.9e-47, Sum P(6) = 8.9e-47
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 557 EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
E R +A+ V + N Y + +N PL + DH
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDH 58
Score = 38 (18.4 bits), Expect = 1.7e-76, Sum P(6) = 1.7e-76
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 378 FRQKLMGKRVNYACRSVISPD 398
FR+ + K++++ C + SP+
Sbjct: 6 FRETDVAKKISHICFGMKSPE 26
>FB|FBgn0030687 [details] [associations]
symbol:CG17209 species:7227 "Drosophila melanogaster"
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISS] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:AE014298 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
GO:GO:0032549 GeneTree:ENSGT00700000104490 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:NP_001096987.2 UniGene:Dm.14839
ProteinModelPortal:A8JUY3 SMR:A8JUY3 STRING:A8JUY3
EnsemblMetazoa:FBtr0300811 GeneID:32524 KEGG:dme:Dmel_CG17209
FlyBase:FBgn0030687 OrthoDB:EOG4BNZSM PhylomeDB:A8JUY3
GenomeRNAi:32524 NextBio:778916 Bgee:A8JUY3 Uniprot:A8JUY3
Length = 1383
Score = 494 (179.0 bits), Expect = 1.0e-98, Sum P(7) = 1.0e-98
Identities = 122/317 (38%), Positives = 173/317 (54%)
Query: 901 LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
L PT N +M SG+KGS +N Q+ + +GQQ + GKRVP + LP F P
Sbjct: 769 LHPT--NSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIP 826
Query: 961 RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
A GF+ + F +GL P E++FH MAGREGLVDTAVKT+ +GYLQR L+K LE L + YD
Sbjct: 827 AARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDG 886
Query: 1021 SVRDADGSIVQFCYGEDGVDV--HQT-----SFISKFDALAAXXXXXXXXXNKFCDKGSH 1073
+VR+A +V YG DG+D +T + ++D L A +
Sbjct: 887 TVRNAVNEMVDTIYGGDGLDPVSMETRNKPVDLVHQYDNLRAQHPQGKDRPLNAEEMSEA 946
Query: 1074 TFVMGRNQEMIYKKCSGQLDASNAY--IMELPDALKDNAEKFAD-----KFLSNEMAKQD 1126
+ R E + +LD N + + L+ EK D + L+ E Q
Sbjct: 947 LETLLRTPEFAEARDDFKLDVRNHINTVSKRIGQLQKRYEKCIDLCHQIECLTTEQLLQ- 1005
Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
F++ + ++ ++ +PG VG +A+QS+GEP TQMTL TFH AG MN+T G+PR+ EI
Sbjct: 1006 FVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEI 1065
Query: 1187 LTIASKDIKTPVITCPL 1203
+ A+K I TP+IT L
Sbjct: 1066 IN-ATKTISTPIITAEL 1081
Score = 304 (112.1 bits), Expect = 1.0e-98, Sum P(7) = 1.0e-98
Identities = 60/121 (49%), Positives = 81/121 (66%)
Query: 490 GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
G +V RHL+DGD+VL NRQP+LHK SIM H +V + ++T R + C+ YNADFDGDEM
Sbjct: 446 GDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKV-QPQRTFRFNECACTPYNADFDGDEM 504
Query: 550 NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
N+H PQ E +RAEA ++ + V P NG+ L + QD I LLT+K+ FL ++E
Sbjct: 505 NLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAM 564
Query: 610 Q 610
Q
Sbjct: 565 Q 565
Score = 227 (85.0 bits), Expect = 1.0e-98, Sum P(7) = 1.0e-98
Identities = 64/179 (35%), Positives = 96/179 (53%)
Query: 287 VLVPPIKFRLPS-----KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARW 341
V VPP R PS K G + E T+ S++L N + ++ ++I W
Sbjct: 254 VFVPPACIR-PSVLSEVKAGTT--EDDLTMKQSEILLINDVIQR-HMATGGKIELIHEDW 309
Query: 342 MNLQQSVNVLFDGKNAAGQRDMAS-----GICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
LQ V + F + + +MA GI Q L+ K+G FR L GKRV+++ R+VIS
Sbjct: 310 DFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVIS 369
Query: 397 PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMR 455
PDP L +N++G+P A LTYPERV P N+ +R+ + NG +HPGA + + S+ +
Sbjct: 370 PDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSSFK 428
Score = 101 (40.6 bits), Expect = 1.0e-98, Sum P(7) = 1.0e-98
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
C+TCGQ C GHFG++DL +PV++ + IC C H + + +K
Sbjct: 67 CETCGQGLNECIGHFGYLDLALPVFHIGHFRSTINILQMICKVCAHVMLKPEDRQLYEKK 126
Query: 61 L 61
L
Sbjct: 127 L 127
Score = 68 (29.0 bits), Expect = 1.0e-98, Sum P(7) = 1.0e-98
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 754 IYKNDLVRGVIDKAQFADYGLVHTVQEL----YGSNTAGTLLSALSRLFTVFLQMHGFTC 809
I ++L+ GV+DKA G + L +G + A + L+R+ + FLQ GF+
Sbjct: 638 IRNSELMCGVMDKATMGS-GTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQNRGFSF 696
Query: 810 GVDDL 814
G+ D+
Sbjct: 697 GISDV 701
Score = 61 (26.5 bits), Expect = 1.0e-98, Sum P(7) = 1.0e-98
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 647 PAIWKPEPLWTGKQVITAVL 666
PA+ KP LWTGKQ+ + ++
Sbjct: 585 PALLKPRRLWTGKQMFSLLM 604
Score = 46 (21.3 bits), Expect = 1.0e-98, Sum P(7) = 1.0e-98
Identities = 12/59 (20%), Positives = 27/59 (45%)
Query: 136 ETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGAS 194
+ TKC +C + N + K G + + P+ + + + N+ E + +DL ++
Sbjct: 150 KVTKCPHCGSPNGGVKKGP-GLLKILHDPYKGRKMDSLFTSNMNEMLRSTQTNRDLNST 207
>POMBASE|SPBC651.08c [details] [associations]
symbol:rpc1 "DNA-directed RNA polymerase III complex
large subunit Rpc1 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISO] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
PomBase:SPBC651.08c GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
EMBL:CU329671 GO:GO:0008270 GenomeReviews:CU329671_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 KO:K03018 OrthoDB:EOG4X3M8C eggNOG:COG0086
GO:GO:0032549 HOGENOM:HOG000222974 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:DQ156227 PIR:T40607 RefSeq:NP_595506.1
ProteinModelPortal:O94666 STRING:O94666 EnsemblFungi:SPBC651.08c.1
GeneID:2541094 KEGG:spo:SPBC651.08c NextBio:20802207 Uniprot:O94666
Length = 1405
Score = 339 (124.4 bits), Expect = 2.5e-98, Sum P(7) = 2.5e-98
Identities = 70/166 (42%), Positives = 105/166 (63%)
Query: 876 DMKMTSQLNKHTSSSVINELLSEGLLKPTGK-NWISLMTTSGAKGSKVNFQQISSHLGQQ 934
D + T + ++ S + + + E + G N +M T G+KGSK+N Q+ + +GQQ
Sbjct: 737 DQEATLEAKISSTLSKVRDDVGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQ 796
Query: 935 ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
+ GKRVP ++LP FH P A GF+ + F +GL P E+ FH ++GREGLVDTA
Sbjct: 797 IISGKRVPDGFQDRSLPHFHKNSKHPLAKGFVSNSFYSGLTPTEFLFHAISGREGLVDTA 856
Query: 995 VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
VKT+ +GY+ R L+K+LE L +YD +VR ++ +VQF YG+DG+D
Sbjct: 857 VKTAETGYMSRRLMKSLEDLSSAYDGTVRSSNSDVVQFVYGDDGLD 902
Score = 317 (116.6 bits), Expect = 2.5e-98, Sum P(7) = 2.5e-98
Identities = 63/116 (54%), Positives = 81/116 (69%)
Query: 490 GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
G +V RHL D DVVL NRQP+LHK SIMAH+V+V + +TLR + C YNADFDGDEM
Sbjct: 441 GDIVERHLHDNDVVLFNRQPSLHKLSIMAHLVKV-RPWRTLRFNECVCGPYNADFDGDEM 499
Query: 550 NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
N+H PQ E ++ EA ++ N V P NG+P+ + QD I +A LL+ KDTFL+R
Sbjct: 500 NLHVPQTEEAKTEALELMGIKNNLVSPRNGEPIIAATQDFITAAYLLSLKDTFLDR 555
Score = 242 (90.2 bits), Expect = 2.5e-98, Sum P(7) = 2.5e-98
Identities = 61/173 (35%), Positives = 98/173 (56%)
Query: 287 VLVPPIKFRLPSKGGD-SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
V PP+ R PS + + E TV +++++ + L A +++ ++ +W +Q
Sbjct: 251 VPAPPVCIR-PSVAQEGATTEDDLTVKITEIIWTSS-LIRAALSKGTPISNLMEQWEFMQ 308
Query: 346 QSVNVLFDGKNAAGQR--DMAS----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDP 399
S+ ++ G R DM S G CQ L+ K+G FR L GKRV+++ R+VISPDP
Sbjct: 309 LSI-AMYINSEMPGLRPSDMPSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDP 367
Query: 400 YLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLS 452
L ++++ +P A LT+PERVT N L+D I NG ++HPGA + +D+ S
Sbjct: 368 NLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPGANYVIDRES 420
Score = 177 (67.4 bits), Expect = 2.5e-98, Sum P(7) = 2.5e-98
Identities = 37/84 (44%), Positives = 53/84 (63%)
Query: 1121 EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGI 1180
E + F+ K++ + +PG VG + +QS+GEP TQMTL TFH AG TLG+
Sbjct: 1022 EKQLRSFVDRCWEKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAAQT-TLGV 1080
Query: 1181 PRLQEILTIASKDIKTPVITCPLL 1204
PR++EI+ A+K I TP+IT L+
Sbjct: 1081 PRIKEIIN-AAKTISTPIITGQLI 1103
Score = 92 (37.4 bits), Expect = 2.5e-98, Sum P(7) = 2.5e-98
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
C TCG+ C GHFG++ L +PV++ + IC C S +E + ++
Sbjct: 66 CATCGESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDCSSVLLSDQEKRQFLKD 125
Query: 61 L 61
L
Sbjct: 126 L 126
Score = 80 (33.2 bits), Expect = 2.5e-98, Sum P(7) = 2.5e-98
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 754 IYKNDLVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
I ++++ GV+DK+ D L + + YG+ A ++ LS++ FL GF+ G
Sbjct: 634 IRNSEIIAGVVDKSVVGDGKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGNRGFSIG 693
Query: 811 VDDL 814
++D+
Sbjct: 694 IEDV 697
Score = 69 (29.3 bits), Expect = 2.5e-98, Sum P(7) = 2.5e-98
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 647 PAIWKPEPLWTGKQVITAVL 666
PAI KP LWTGKQV T ++
Sbjct: 577 PAIIKPRCLWTGKQVFTVLM 596
Score = 37 (18.1 bits), Expect = 7.9e-49, Sum P(6) = 7.9e-49
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 555 QDEVSRAEAYNIVNANNQYVRPSNGD 580
Q V +A I++ +YVR S D
Sbjct: 160 QGVVKKAGPLKIIHERFRYVRKSQDD 185
>CGD|CAL0000919 [details] [associations]
symbol:RPO21 species:5476 "Candida albicans" [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0009267 "cellular response to starvation"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 CGD:CAL0000919
GO:GO:0071216 GO:GO:0036180 GO:GO:0003677 GO:GO:0006366
GO:GO:0009267 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1 STRING:Q5ACI7
GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 368 (134.6 bits), Expect = 4.2e-97, Sum P(7) = 4.2e-97
Identities = 68/134 (50%), Positives = 98/134 (73%)
Query: 907 NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
N + M TSG+KGS +N Q+S+ +GQQ +EGKR+P ++LP F D++P + GF+
Sbjct: 741 NNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFV 800
Query: 967 IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
+ +L GL PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD + R++
Sbjct: 801 ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 860
Query: 1027 GSIVQFCYGEDGVD 1040
G I+QF YGEDG+D
Sbjct: 861 GDIIQFIYGEDGID 874
Score = 253 (94.1 bits), Expect = 4.2e-97, Sum P(7) = 4.2e-97
Identities = 53/118 (44%), Positives = 71/118 (60%)
Query: 490 GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
G V RHL D D VL NRQP+LHK S+MAH VRV+ T R++ + S YNADFDGDEM
Sbjct: 429 GWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVRVMP-YSTFRLNLSVTSPYNADFDGDEM 487
Query: 550 NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDE 607
N+H PQ +R+E I Q V P + P+ ++QD + +T +D F+ D+
Sbjct: 488 NLHVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQ 545
Score = 224 (83.9 bits), Expect = 4.2e-97, Sum P(7) = 4.2e-97
Identities = 45/91 (49%), Positives = 65/91 (71%)
Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
A + ++F N + + + ++ +F S+ PGE VG++A+QS+GEP+TQMTLNTFH A
Sbjct: 1029 ARRVIEEFKLNRASFEWVMGEIETQFQKSIVHPGEMVGVVAAQSIGEPATQMTLNTFHYA 1088
Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
G NVTLG+PRL+EIL +A K+IKTP +T
Sbjct: 1089 GVSSKNVTLGVPRLKEILNVA-KNIKTPAMT 1118
Score = 210 (79.0 bits), Expect = 4.2e-97, Sum P(7) = 4.2e-97
Identities = 67/206 (32%), Positives = 104/206 (50%)
Query: 267 DMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYL 323
D + GF + + L VL VPP R PS + E T L+ +++ANI +
Sbjct: 218 DCYKMGFNEDYARPEWMLITVLPVPPPPVR-PSIAFNETARGEDDLTFKLADIIKANINV 276
Query: 324 ANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRD--MASG-----ICQLLEKKEG 376
+ + + +++ + L Q + + AGQ +G I L+ KEG
Sbjct: 277 QR--LETDGSPQHVISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEG 334
Query: 377 LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
R LMGKRV+++ R+VIS DP L ++++G+P A LTYPE VTP+N+ KL + + N
Sbjct: 335 RLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRN 394
Query: 437 GAEIHPGATHYL-DKLSTMRLPPNKK 461
G HPGA + + D + L NK+
Sbjct: 395 GPNEHPGAKYVIRDTGDRIDLRYNKR 420
Score = 106 (42.4 bits), Expect = 4.2e-97, Sum P(7) = 4.2e-97
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFC 44
C+TCG+ CPGHFGHI+L PV++ + +C C
Sbjct: 68 CQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHC 111
Score = 84 (34.6 bits), Expect = 4.2e-97, Sum P(7) = 4.2e-97
Identities = 29/137 (21%), Positives = 59/137 (43%)
Query: 754 IYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
I +++ GV+DK G L+HTV G L S++ ++ +L +GF+ G+
Sbjct: 607 IVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPKVCAELFSSIQKVVNYWLLHNGFSIGI 666
Query: 812 DDLLILKDKERERKNHLHGSEEIGKRVHLEA----LELEDGAEIDPIKLKSEIEKAMRGG 867
D + R+ + +++ + + ++A LE E G + + + + +
Sbjct: 667 GDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQHNKLEPEPGMTLRE-SFEHNVSRVLNQA 725
Query: 868 GDAAVAYFDMKMTSQLN 884
D A +M + LN
Sbjct: 726 RDTAGRSAEMSL-KDLN 741
Score = 65 (27.9 bits), Expect = 4.2e-97, Sum P(7) = 4.2e-97
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 642 VLPLLPAIWKPEPLWTGKQVITAVL 666
V+P PA+ KP+ LWTGKQ+++ +
Sbjct: 559 VIPP-PAVVKPKQLWTGKQLLSLAI 582
>UNIPROTKB|Q5ACI7 [details] [associations]
symbol:RPO21 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 CGD:CAL0000919 GO:GO:0071216 GO:GO:0036180
GO:GO:0003677 GO:GO:0006366 GO:GO:0009267 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1
STRING:Q5ACI7 GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 368 (134.6 bits), Expect = 4.2e-97, Sum P(7) = 4.2e-97
Identities = 68/134 (50%), Positives = 98/134 (73%)
Query: 907 NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
N + M TSG+KGS +N Q+S+ +GQQ +EGKR+P ++LP F D++P + GF+
Sbjct: 741 NNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFV 800
Query: 967 IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
+ +L GL PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD + R++
Sbjct: 801 ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 860
Query: 1027 GSIVQFCYGEDGVD 1040
G I+QF YGEDG+D
Sbjct: 861 GDIIQFIYGEDGID 874
Score = 253 (94.1 bits), Expect = 4.2e-97, Sum P(7) = 4.2e-97
Identities = 53/118 (44%), Positives = 71/118 (60%)
Query: 490 GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
G V RHL D D VL NRQP+LHK S+MAH VRV+ T R++ + S YNADFDGDEM
Sbjct: 429 GWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVRVMP-YSTFRLNLSVTSPYNADFDGDEM 487
Query: 550 NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDE 607
N+H PQ +R+E I Q V P + P+ ++QD + +T +D F+ D+
Sbjct: 488 NLHVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQ 545
Score = 224 (83.9 bits), Expect = 4.2e-97, Sum P(7) = 4.2e-97
Identities = 45/91 (49%), Positives = 65/91 (71%)
Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
A + ++F N + + + ++ +F S+ PGE VG++A+QS+GEP+TQMTLNTFH A
Sbjct: 1029 ARRVIEEFKLNRASFEWVMGEIETQFQKSIVHPGEMVGVVAAQSIGEPATQMTLNTFHYA 1088
Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
G NVTLG+PRL+EIL +A K+IKTP +T
Sbjct: 1089 GVSSKNVTLGVPRLKEILNVA-KNIKTPAMT 1118
Score = 210 (79.0 bits), Expect = 4.2e-97, Sum P(7) = 4.2e-97
Identities = 67/206 (32%), Positives = 104/206 (50%)
Query: 267 DMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYL 323
D + GF + + L VL VPP R PS + E T L+ +++ANI +
Sbjct: 218 DCYKMGFNEDYARPEWMLITVLPVPPPPVR-PSIAFNETARGEDDLTFKLADIIKANINV 276
Query: 324 ANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRD--MASG-----ICQLLEKKEG 376
+ + + +++ + L Q + + AGQ +G I L+ KEG
Sbjct: 277 QR--LETDGSPQHVISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEG 334
Query: 377 LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
R LMGKRV+++ R+VIS DP L ++++G+P A LTYPE VTP+N+ KL + + N
Sbjct: 335 RLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRN 394
Query: 437 GAEIHPGATHYL-DKLSTMRLPPNKK 461
G HPGA + + D + L NK+
Sbjct: 395 GPNEHPGAKYVIRDTGDRIDLRYNKR 420
Score = 106 (42.4 bits), Expect = 4.2e-97, Sum P(7) = 4.2e-97
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFC 44
C+TCG+ CPGHFGHI+L PV++ + +C C
Sbjct: 68 CQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHC 111
Score = 84 (34.6 bits), Expect = 4.2e-97, Sum P(7) = 4.2e-97
Identities = 29/137 (21%), Positives = 59/137 (43%)
Query: 754 IYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
I +++ GV+DK G L+HTV G L S++ ++ +L +GF+ G+
Sbjct: 607 IVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPKVCAELFSSIQKVVNYWLLHNGFSIGI 666
Query: 812 DDLLILKDKERERKNHLHGSEEIGKRVHLEA----LELEDGAEIDPIKLKSEIEKAMRGG 867
D + R+ + +++ + + ++A LE E G + + + + +
Sbjct: 667 GDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQHNKLEPEPGMTLRE-SFEHNVSRVLNQA 725
Query: 868 GDAAVAYFDMKMTSQLN 884
D A +M + LN
Sbjct: 726 RDTAGRSAEMSL-KDLN 741
Score = 65 (27.9 bits), Expect = 4.2e-97, Sum P(7) = 4.2e-97
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 642 VLPLLPAIWKPEPLWTGKQVITAVL 666
V+P PA+ KP+ LWTGKQ+++ +
Sbjct: 559 VIPP-PAVVKPKQLWTGKQLLSLAI 582
>ASPGD|ASPL0000047704 [details] [associations]
symbol:AN10316 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EnsemblFungi:CADANIAT00009238 Uniprot:C8VPJ2
Length = 1445
Score = 342 (125.4 bits), Expect = 5.6e-97, Sum P(6) = 5.6e-97
Identities = 77/183 (42%), Positives = 107/183 (58%)
Query: 484 SDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNAD 543
+D EG +V RH++DGD+VL NRQP+LHK SI++H +V + +T R++ C+ YNAD
Sbjct: 455 ADQLQEGDIVERHIEDGDIVLFNRQPSLHKLSILSHFAKV-RPHRTFRLNECVCNPYNAD 513
Query: 544 FDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFL 603
FDGDEMN+H PQ E +RAEA ++ N P NG+P+ IQD I +A LL+ KD F
Sbjct: 514 FDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGEPIIGAIQDFISAAYLLSSKDNFF 573
Query: 604 NRDEFCQXXXXXXXXXXXXXXFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVIT 663
+R F Q G P R ++ P PA++KP+ LWTGKQV
Sbjct: 574 DRRSFTQICLY----------MLG-PQTRF-------DLPP--PAVFKPQMLWTGKQVFN 613
Query: 664 AVL 666
++
Sbjct: 614 ILM 616
Score = 304 (112.1 bits), Expect = 5.6e-97, Sum P(6) = 5.6e-97
Identities = 62/130 (47%), Positives = 87/130 (66%)
Query: 911 LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRF 970
+M TSG+KGS +N Q+ + +GQQ + G+RV +TLP F P + GF+ + F
Sbjct: 794 IMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSF 853
Query: 971 LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIV 1030
+GL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L YD +VR++ IV
Sbjct: 854 FSGLLPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTGYDDTVRNSSQGIV 913
Query: 1031 QFCYGEDGVD 1040
QF YG+D +D
Sbjct: 914 QFQYGDDKLD 923
Score = 256 (95.2 bits), Expect = 5.6e-97, Sum P(6) = 5.6e-97
Identities = 74/198 (37%), Positives = 103/198 (52%)
Query: 266 SDMQQQGFG-KKAGHSIFFLGVVLVPPIKFRLPSKGGD-SVMEHPQTVLLSKVLQANIYL 323
SD + G K+A +F + PP+ R PS G D S E T L ++Q+NI L
Sbjct: 250 SDCELLGLDPKEARPEMFLWQFIPAPPVCIR-PSVGQDASSTEDDLTAKLGDIVQSNINL 308
Query: 324 ANAYVNQPDNAKVIVARW--MNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFR 379
NA + + I+ W M LQ +V + D G N A G Q L+ K+G FR
Sbjct: 309 KNALLKGAP-VQTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRLKGKQGRFR 367
Query: 380 QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
L GKRV+++ R+VISPDP L V+E+ +P A +TYPE V +N KL+ + NG +
Sbjct: 368 GNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVNRYNKEKLQQCVRNGQK 427
Query: 440 IHPGATHYLDK---LSTM 454
PGA + + K L TM
Sbjct: 428 KWPGANYIIKKGNPLKTM 445
Score = 198 (74.8 bits), Expect = 5.6e-97, Sum P(6) = 5.6e-97
Identities = 39/84 (46%), Positives = 56/84 (66%)
Query: 1121 EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGI 1180
E + F+ K+ + +PG VG + +QS+GEP TQMTL TFH AG M++T G+
Sbjct: 1045 ERTLRTFIAECLMKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGV 1104
Query: 1181 PRLQEILTIASKDIKTPVITCPLL 1204
PR++EI+ ASK+I TPVI+C L+
Sbjct: 1105 PRIKEIIN-ASKEISTPVISCELV 1127
Score = 102 (41.0 bits), Expect = 5.6e-97, Sum P(6) = 5.6e-97
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHF---KASRREVEKC 57
C+TCG +C GHFGH+ LV+P ++ + IC C H +A RR +
Sbjct: 78 CQTCGGALQVCNGHFGHVRLVLPAFHVGYFKRVISILQEICKECSHILLPEAERRAFLRE 137
Query: 58 VRKLEL 63
+R+ L
Sbjct: 138 MRRPRL 143
Score = 59 (25.8 bits), Expect = 5.6e-97, Sum P(6) = 5.6e-97
Identities = 33/148 (22%), Positives = 63/148 (42%)
Query: 754 IYKNDLVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
+ ++++ GV+DK+ + + + +G A ++ LS+L + GF+ G
Sbjct: 655 VRNSEVMCGVMDKSTVGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSARWFSNMGFSIG 714
Query: 811 VDDLLILKDKERERKNHLHGS-----EEIGKRVHLEALELEDGA-EIDPIK--LKSEIEK 862
+ D+ D+ + KN L + +E+ + LE G E+ ++ L + K
Sbjct: 715 ITDVYP-SDRLVQSKNDLVEAAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSK 773
Query: 863 AMRGGGDAAVAYFDMKMTSQLNKHTSSS 890
+ GD +A K S L TS S
Sbjct: 774 VRQQAGDECIAQLS-KYNSPLIMATSGS 800
Score = 41 (19.5 bits), Expect = 2.5e-15, Sum P(3) = 2.5e-15
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 367 ICQ-LLEKKEG-LFRQKLMGKRVNYACRS 393
+C+ +L K+ L R LMG ++Y RS
Sbjct: 963 VCEEMLSKERAKLARYDLMGAELDYMDRS 991
Score = 38 (18.4 bits), Expect = 2.1e-74, Sum P(6) = 2.1e-74
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 379 RQKLMGKRVNYACRSVISPDPYLAVNEI 406
R+ + KRVN CR + + AVN +
Sbjct: 147 RRMQIAKRVNDRCRKTRTCENCGAVNGV 174
>SGD|S000005642 [details] [associations]
symbol:RPO31 "RNA polymerase III largest subunit C160"
species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=IDA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 SGD:S000005642
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:X90518
EMBL:X94335 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005666
GO:GO:0003899 Reactome:REACT_83470 KO:K03018 OrthoDB:EOG4X3M8C
eggNOG:COG0086 GO:GO:0032549 Reactome:REACT_87991 GO:GO:0042797
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222974
PANTHER:PTHR19376:SF15 EMBL:X03129 EMBL:Z75024 PIR:A00694
RefSeq:NP_014759.1 ProteinModelPortal:P04051 SMR:P04051
DIP:DIP-612N IntAct:P04051 MINT:MINT-557787 STRING:P04051
PaxDb:P04051 PeptideAtlas:P04051 EnsemblFungi:YOR116C GeneID:854283
KEGG:sce:YOR116C CYGD:YOR116c OMA:CINELDN NextBio:976257
Genevestigator:P04051 GermOnline:YOR116C Uniprot:P04051
Length = 1460
Score = 313 (115.2 bits), Expect = 2.7e-96, Sum P(8) = 2.7e-96
Identities = 63/136 (46%), Positives = 89/136 (65%)
Query: 907 NWIS--LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGG 964
NW + +M T G+KGS +N Q+ + +GQQ + G RVP ++LP F P++ G
Sbjct: 787 NWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKG 846
Query: 965 FIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD 1024
F+ + F +GL P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L YD +VR
Sbjct: 847 FVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRT 906
Query: 1025 ADGSIVQFCYGEDGVD 1040
+ IVQF YG DG+D
Sbjct: 907 SANGIVQFTYGGDGLD 922
Score = 302 (111.4 bits), Expect = 2.7e-96, Sum P(8) = 2.7e-96
Identities = 56/121 (46%), Positives = 83/121 (68%)
Query: 490 GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
G +V RHL+DGDVVL NRQP+LH+ SI++H ++ + +T R++ C+ YNADFDGDEM
Sbjct: 459 GDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKI-RPWRTFRLNECVCTPYNADFDGDEM 517
Query: 550 NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
N+H PQ E +RAEA N++ N + P +G+P+ + QD I + L++ KD+F +R
Sbjct: 518 NLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLT 577
Query: 610 Q 610
Q
Sbjct: 578 Q 578
Score = 247 (92.0 bits), Expect = 2.7e-96, Sum P(8) = 2.7e-96
Identities = 63/187 (33%), Positives = 101/187 (54%)
Query: 298 SKGGDSVMEHPQTVLLSKVLQANI---YLANAYVNQPDNAKVIVARWMNLQQSVN-VLFD 353
S D ++ + V S +++A + N + D ++ VA ++N SVN +
Sbjct: 280 SNEDDLTVKLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYIN-SDSVNPAMLP 338
Query: 354 GK-NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYF 412
G N G+ G CQ L+ K+G FR L GKRV+++ R+VISPDP L+++E+ +P
Sbjct: 339 GSSNGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRV 398
Query: 413 ALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDT 472
A LTYPE+VT +N KL++ I+NG +HPGA + L + R R+ + + L
Sbjct: 399 AKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNEDARRNLRYGDRMKLAKNLQI 458
Query: 473 SRGAIVQ 479
G +V+
Sbjct: 459 --GDVVE 463
Score = 210 (79.0 bits), Expect = 2.7e-96, Sum P(8) = 2.7e-96
Identities = 44/104 (42%), Positives = 66/104 (63%)
Query: 1103 PD-ALKDNAEKFADK-FLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQ 1160
PD + DN + + + +E + + FL++ K+ + +PG +G + +QS+GEP TQ
Sbjct: 1044 PDETVPDNVKTSVSQLYRISEKSVRKFLEIALFKYRKARLEPGTAIGAIGAQSIGEPGTQ 1103
Query: 1161 MTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
MTL TFH AG MNVTLG+PR++EI+ ASK I TP+I L+
Sbjct: 1104 MTLKTFHFAGVASMNVTLGVPRIKEIIN-ASKVISTPIINAVLV 1146
Score = 86 (35.3 bits), Expect = 2.7e-96, Sum P(8) = 2.7e-96
Identities = 27/130 (20%), Positives = 59/130 (45%)
Query: 757 NDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDD 813
+ ++ GV+DK+ D + + +T+ YG A ++ +++L FL GF+ G++D
Sbjct: 657 SQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFSIGIND 716
Query: 814 LLILKDKERERKNHL----HGSEEIGKRVHLEALELEDGAEIDPI---KLKSEIEKAMRG 866
+ D +++++ + H +E+ + LE + G + K+ + K
Sbjct: 717 VTPADDLKQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVREE 776
Query: 867 GGDAAVAYFD 876
GD + D
Sbjct: 777 VGDVCINELD 786
Score = 80 (33.2 bits), Expect = 2.7e-96, Sum P(8) = 2.7e-96
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
C TC C GHFGH+ L +PV++ + IC C S + + + +
Sbjct: 67 CATCHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETDKRQFLHE 126
Query: 61 L 61
L
Sbjct: 127 L 127
Score = 67 (28.6 bits), Expect = 2.7e-96, Sum P(8) = 2.7e-96
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 647 PAIWKPEPLWTGKQVITAVL--NH 668
PAI KP LWTGKQV + ++ NH
Sbjct: 595 PAIMKPYYLWTGKQVFSLLIKPNH 618
Score = 38 (18.4 bits), Expect = 4.5e-46, Sum P(6) = 4.5e-46
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 1116 KFLSNEMAKQDFLKLVKHKFVLS 1138
K L NEM++ D +++ +LS
Sbjct: 639 KSLPNEMSQNDGFVIIRGSQILS 661
Score = 37 (18.1 bits), Expect = 2.7e-96, Sum P(8) = 2.7e-96
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 149 RISKPTFGWIHMNGMPHADI 168
+I TF W+ P DI
Sbjct: 177 KIIHDTFRWVGKKSAPEKDI 196
Score = 37 (18.1 bits), Expect = 6.5e-17, Sum P(4) = 6.5e-17
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 588 DHIVSAALLTKKD 600
DH+ AA KKD
Sbjct: 1394 DHLFDAAFYMKKD 1406
>UNIPROTKB|G4MT89 [details] [associations]
symbol:MGG_04652 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0043581 EMBL:CM001232 GO:GO:0003899
GO:GO:0005665 KO:K03006 RefSeq:XP_003713642.1
EnsemblFungi:MGG_04652T0 GeneID:2678092 KEGG:mgr:MGG_04652
Uniprot:G4MT89
Length = 1757
Score = 358 (131.1 bits), Expect = 6.5e-96, Sum P(7) = 6.5e-96
Identities = 75/166 (45%), Positives = 110/166 (66%)
Query: 875 FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
F+ K++ LN + +E LK N ++ M+ SG+KGS +N Q+++ +GQQ
Sbjct: 725 FESKVSKALNTAREKAGTT---TEKSLKDIN-NAVT-MSRSGSKGSSINISQMTALVGQQ 779
Query: 935 ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
+EGKR+P +TLP F D++P A GF+ + +L GL P E++FH MAGREGL+DTA
Sbjct: 780 IVEGKRIPFGFKYRTLPHFTKDDFSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTA 839
Query: 995 VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
VKT+ +GY+QR L+K LE + YD +VR++ G I+QF YGEDG+D
Sbjct: 840 VKTAETGYIQRRLVKALEDVAAKYDGTVRNSLGDIIQFIYGEDGLD 885
Score = 258 (95.9 bits), Expect = 6.5e-96, Sum P(7) = 6.5e-96
Identities = 51/117 (43%), Positives = 70/117 (59%)
Query: 490 GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
G+ V RHL GD ++ NRQP+LHK S+M H VRV+ T R++ + S YNADFDGDEM
Sbjct: 443 GQKVERHLLTGDYIIFNRQPSLHKESMMGHQVRVMP-YSTFRLNLSVTSPYNADFDGDEM 501
Query: 550 NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRD 606
N+H PQ E +RAE + V P PL ++QD + L ++D FL ++
Sbjct: 502 NLHVPQTEETRAEVKELCMVPLNIVSPQRNSPLMGIVQDTLAGTYKLCRRDVFLTKE 558
Score = 233 (87.1 bits), Expect = 6.5e-96, Sum P(7) = 6.5e-96
Identities = 89/317 (28%), Positives = 145/317 (45%)
Query: 174 RGCNLGETFSGGEEEKD-LGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFK 232
+G + E +GG++EKD + ++ ++ T P + A + + K A G K
Sbjct: 146 KGKKVCEIETGGKDEKDSIDTATGIEKVPHGGCGSTHPDIRKKALQLYAKVEEAREEGMK 205
Query: 233 KQ-KDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVL-VP 290
K+ KD + P I++ + E+ D+ + G K + + VL VP
Sbjct: 206 KEVKDKL---ITPEQAHHILKHIPED---------DLWKMGLNKDYARPEWLIVTVLPVP 253
Query: 291 PIKFRLPSKGGDSVM-----EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNL- 344
P R PS D E T L +++AN + A+ N I + L
Sbjct: 254 PPPVR-PSISVDGTSQGMRSEDDLTYKLGDIIRANGNVKQAHAEGAPNH--ICTEFEELL 310
Query: 345 QQSVNVLFDGKNAAGQRDMA-SG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
Q V D A+ R + SG I L+ KEG R LMGKRV+++ R+VI+ D
Sbjct: 311 QYHVATYMDNDIASIPRSLQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGD 370
Query: 399 PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLST---MR 455
++++E+G+P A LTYPE VTP N+ +L ++NG HPGA + + T +R
Sbjct: 371 ANISLHEVGVPRSIARTLTYPETVTPHNIDRLHQYVVNGPNEHPGAKYIVRTDGTRIDLR 430
Query: 456 LPPNK-KMRISIGRKLD 471
N+ ++ G+K++
Sbjct: 431 HVKNRGSTQLEYGQKVE 447
Score = 203 (76.5 bits), Expect = 6.5e-96, Sum P(7) = 6.5e-96
Identities = 41/78 (52%), Positives = 55/78 (70%)
Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
N +A + ++ ++ S PGE VG+LA+QS+GEP+TQMTLNTFH G NVTLG
Sbjct: 1051 NRIAFDHVIGEMESRWQRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFTGISSKNVTLG 1110
Query: 1180 IPRLQEILTIASKDIKTP 1197
+PRL+EIL + S +IKTP
Sbjct: 1111 VPRLKEILNV-SAEIKTP 1127
Score = 117 (46.2 bits), Expect = 6.5e-96, Sum P(7) = 6.5e-96
Identities = 22/63 (34%), Positives = 28/63 (44%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRK 60
CKTC CPGHFGHI+L PVY+P + +C C E+ +
Sbjct: 69 CKTCNNDMNNCPGHFGHIELAKPVYHPGFINKTKKILEMVCHQCSKLLCDENNDEQFAQA 128
Query: 61 LEL 63
L L
Sbjct: 129 LRL 131
Score = 73 (30.8 bits), Expect = 6.5e-96, Sum P(7) = 6.5e-96
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 642 VLPLLPAIWKPEPLWTGKQVITAVL 666
++P PAI +P P WTGKQ+I+ V+
Sbjct: 573 IIPQ-PAILRPRPRWTGKQIISMVI 596
Score = 58 (25.5 bits), Expect = 6.5e-96, Sum P(7) = 6.5e-96
Identities = 28/125 (22%), Positives = 51/125 (40%)
Query: 754 IYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
I +L+ G++ K A G++H G A L+ R+ +L +G + G+
Sbjct: 618 IQSGELMFGLLTKKNVGAASGGIIHICYNEQGPARAMAFLNGCQRVVNYWLLHNGHSIGI 677
Query: 812 DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP---IK--LKSEIEKAMRG 866
D + D K H +E+ + L L + E P I+ +S++ KA+
Sbjct: 678 GDTI--PDPVTIEKIQAHINEQKAEVAELTDLATTNRLEALPGMNIRETFESKVSKALNT 735
Query: 867 GGDAA 871
+ A
Sbjct: 736 AREKA 740
Score = 45 (20.9 bits), Expect = 2.9e-61, Sum P(6) = 2.9e-61
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 1021 SVRDADGSIVQFCYGEDG 1038
+V A G I+ CY E G
Sbjct: 632 NVGAASGGIIHICYNEQG 649
Score = 40 (19.1 bits), Expect = 8.5e-54, Sum P(6) = 8.5e-54
Identities = 20/90 (22%), Positives = 42/90 (46%)
Query: 305 MEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIV---ARWMNLQQSVN----VLFDGKNA 357
+ +P+TV + + + Y+ N N+ AK IV ++L+ N L G+
Sbjct: 388 LTYPETVTPHNIDRLHQYVVNG-PNEHPGAKYIVRTDGTRIDLRHVKNRGSTQLEYGQKV 446
Query: 358 AGQRDMASGICQLLEKKEGLFRQKLMGKRV 387
+R + +G + ++ L ++ +MG +V
Sbjct: 447 --ERHLLTGDYIIFNRQPSLHKESMMGHQV 474
Score = 37 (18.1 bits), Expect = 1.7e-53, Sum P(6) = 1.7e-53
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 295 RLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY 327
R PS +S+M H V+ + N+ + + Y
Sbjct: 460 RQPSLHKESMMGHQVRVMPYSTFRLNLSVTSPY 492
>WB|WBGene00004411 [details] [associations]
symbol:rpc-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0040035 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 eggNOG:COG0086
HSSP:P04050 GO:GO:0032549 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:FO080771 PIR:T34157 RefSeq:NP_501127.2
ProteinModelPortal:Q18566 SMR:Q18566 STRING:Q18566 PaxDb:Q18566
EnsemblMetazoa:C42D4.8 GeneID:177491 KEGG:cel:CELE_C42D4.8
UCSC:C42D4.8 CTD:177491 WormBase:C42D4.8 InParanoid:Q18566
NextBio:897062 Uniprot:Q18566
Length = 1400
Score = 334 (122.6 bits), Expect = 7.5e-95, Sum P(6) = 7.5e-95
Identities = 76/177 (42%), Positives = 101/177 (57%)
Query: 490 GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
G + RHL D DVVL NRQP+LHK SIM+H +V+ G +T R + C+ YNADFDGDEM
Sbjct: 443 GDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPG-RTFRFNECACTPYNADFDGDEM 501
Query: 550 NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
N+H PQ ++AEA ++N N + P +G+PL + IQD I LLT KDTFL R E
Sbjct: 502 NLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVY 561
Query: 610 QXXXXXXXXXXXXXXFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL 666
+ + K ++ I P PAI +P LWTGKQ+I ++
Sbjct: 562 RFAAALIDA-------SAKKQTKIRIP-------P--PAIRRPVELWTGKQLIELII 602
Score = 314 (115.6 bits), Expect = 7.5e-95, Sum P(6) = 7.5e-95
Identities = 61/129 (47%), Positives = 85/129 (65%)
Query: 912 MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
M G+KGS +N Q+ + +GQQ + G R P ++LP F P A GF+ + F
Sbjct: 776 MAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFY 835
Query: 972 TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
+GL P E++FH M GREGLVDTAVKT+ +GY+QR L+K LE L SYD +VR + G +++
Sbjct: 836 SGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIE 895
Query: 1032 FCYGEDGVD 1040
F +GEDG+D
Sbjct: 896 FVFGEDGLD 904
Score = 228 (85.3 bits), Expect = 7.5e-95, Sum P(6) = 7.5e-95
Identities = 57/172 (33%), Positives = 94/172 (54%)
Query: 289 VPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNA--KVIVARWMN 343
VPP+ R PS + E T+ L +++ N L ++ D A K + W +
Sbjct: 253 VPPVCIR-PSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKK---HKRDGAPSKTLFETWEH 308
Query: 344 LQQSVNVLFDGKNAAGQRDMAS-----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
LQ + + + + DM Q L+ K+G FR L GKRV+++ R+VISPD
Sbjct: 309 LQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPD 368
Query: 399 PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDK 450
P L ++++G+P + A+ LT+PE V N+ K+R +ING+++HPGA + ++K
Sbjct: 369 PNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEK 420
Score = 214 (80.4 bits), Expect = 7.5e-95, Sum P(6) = 7.5e-95
Identities = 66/202 (32%), Positives = 101/202 (50%)
Query: 1019 DYSVRDA-DGSIVQFCYG-EDGVDVHQTSF----ISKFDAL--AAXXXXXXXXXNKFCDK 1070
D ++ +A DGS+V F + E ++ T + K D + A F DK
Sbjct: 904 DPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEIQKKFKGKYVHFADK 963
Query: 1071 GSHTFVMGRNQEMIYKKCSGQLDASNAYIMELP--DALK--DNAEKFADKFLSNE-MAKQ 1125
S ++ + K +G+ N +L ++ K N E + L+N + K
Sbjct: 964 LSE-YITQTEIKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYKTSLLANSCLTKT 1022
Query: 1126 D---FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
F++L +K ++ +PG VG +A+ S+GEPSTQMTL TFH AG MN+T G+PR
Sbjct: 1023 QLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPR 1082
Query: 1183 LQEILTIASKDIKTPVITCPLL 1204
++EI+ A K I TP+IT LL
Sbjct: 1083 IKEIIN-AVKTISTPIITAALL 1103
Score = 80 (33.2 bits), Expect = 7.5e-95, Sum P(6) = 7.5e-95
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFC 44
C TCG C GHFG+ DL VPV++ + IC C
Sbjct: 70 CSTCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNC 113
Score = 70 (29.7 bits), Expect = 7.5e-95, Sum P(6) = 7.5e-95
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 754 IYKND-LVRGVIDKAQFADYGLVHTVQEL---YGSNTAGTLLSALSRLFTVFLQMHGFTC 809
I +N L+ G +DK+ V+ L YG + A + L+R+ VFL GF+
Sbjct: 635 IIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSI 694
Query: 810 GVDDLLILKDKERER 824
G+ D+ + RE+
Sbjct: 695 GIGDVRPSEQLLREK 709
Score = 42 (19.8 bits), Expect = 7.7e-43, Sum P(4) = 7.7e-43
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 48 KASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESS 84
K+ +E C + +II+ ++ A LD L SS
Sbjct: 619 KSYTGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSSS 655
Score = 37 (18.1 bits), Expect = 6.0e-39, Sum P(3) = 6.0e-39
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 754 IYKNDLVRGVIDKAQFADYG 773
I+ N L V K Q A+YG
Sbjct: 36 IFNNKLYEDVEGKLQPANYG 55
>CGD|CAL0002215 [details] [associations]
symbol:orf19.3103 species:5476 "Candida albicans" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 CGD:CAL0002215 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AACQ01000086 KO:K03018 eggNOG:COG0086
GO:GO:0032549 PANTHER:PTHR19376:SF15 RefSeq:XP_715412.1
ProteinModelPortal:Q5A0Z3 STRING:Q5A0Z3 GeneID:3642908
KEGG:cal:CaO19.3103 Uniprot:Q5A0Z3
Length = 1448
Score = 311 (114.5 bits), Expect = 3.4e-94, Sum P(7) = 3.4e-94
Identities = 61/130 (46%), Positives = 87/130 (66%)
Query: 911 LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRF 970
+M T G+KGS +N Q+ + +GQQ + G RVP ++LP F P++ GF+ + F
Sbjct: 788 IMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSF 847
Query: 971 LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIV 1030
+GL P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L YD +VR++ IV
Sbjct: 848 FSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQYDNTVRNSSNGIV 907
Query: 1031 QFCYGEDGVD 1040
QF YG DG+D
Sbjct: 908 QFTYGGDGLD 917
Score = 301 (111.0 bits), Expect = 3.4e-94, Sum P(7) = 3.4e-94
Identities = 55/121 (45%), Positives = 83/121 (68%)
Query: 490 GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
G +V RH++DGDVVL NRQP+LH+ SI++H ++ + +T R++ C+ YNADFDGDEM
Sbjct: 455 GDVVERHIEDGDVVLFNRQPSLHRLSILSHYAKI-RPWRTFRLNECVCTPYNADFDGDEM 513
Query: 550 NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
N+H PQ E +RAEA N++ N + P +G+P+ + QD I + L++ KD+F +R
Sbjct: 514 NLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLV 573
Query: 610 Q 610
Q
Sbjct: 574 Q 574
Score = 239 (89.2 bits), Expect = 3.4e-94, Sum P(7) = 3.4e-94
Identities = 56/166 (33%), Positives = 88/166 (53%)
Query: 286 VVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA---NAYVNQPDNAKVIVARWM 342
V + P + S D ++ + V S +++A I N + Q D ++ VA ++
Sbjct: 265 VCIRPSVMMDSQSNEDDLTVKLTEIVWTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYI 324
Query: 343 NLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLA 402
N + L G A CQ L+ K+G FR L GKRV+++ R+VISPDP L
Sbjct: 325 NSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLK 384
Query: 403 VNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL 448
++E+ +P A LTYPE+ T +N KL+ ++NG +IHPGA + +
Sbjct: 385 IDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPGANYVM 430
Score = 209 (78.6 bits), Expect = 3.4e-94, Sum P(7) = 3.4e-94
Identities = 47/101 (46%), Positives = 63/101 (62%)
Query: 1104 DALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTL 1163
DA+K A K S A + FL+ +K+ + +PG VG + +QS+GEP TQMTL
Sbjct: 1041 DAVKVKAIDQLSKISSK--AVKTFLEQCLYKYSRARVEPGTAVGAIGAQSIGEPGTQMTL 1098
Query: 1164 NTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
TFH AG MNVTLG+PR++EI+ ASK I TP+I L+
Sbjct: 1099 KTFHFAGVASMNVTLGVPRIKEIIN-ASKVISTPIINAVLV 1138
Score = 81 (33.6 bits), Expect = 3.4e-94, Sum P(7) = 3.4e-94
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFC 44
C TC C GHFGHI L +PV++ + IC C
Sbjct: 67 CSTCHGNLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKSC 110
Score = 76 (31.8 bits), Expect = 3.4e-94, Sum P(7) = 3.4e-94
Identities = 17/70 (24%), Positives = 39/70 (55%)
Query: 759 LVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
++ G++DK+ D + + +T+ YG A ++ +++L FL GF+ G++D+
Sbjct: 654 ILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGINDVT 713
Query: 816 ILKDKERERK 825
D+ +++K
Sbjct: 714 PA-DELKQKK 722
Score = 63 (27.2 bits), Expect = 3.4e-94, Sum P(7) = 3.4e-94
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 647 PAIWKPEPLWTGKQVITAVL 666
P I+KP LWTGKQV + ++
Sbjct: 591 PTIFKPVMLWTGKQVFSLLI 610
Score = 37 (18.1 bits), Expect = 6.2e-14, Sum P(3) = 6.2e-14
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 166 ADIRANLIRGCNLGETFSGGEEEKDL 191
A + LIR NLG + E+E+ +
Sbjct: 963 APLENKLIRYDNLGNALNDKEKEQKI 988
>SGD|S000002299 [details] [associations]
symbol:RPO21 "RNA polymerase II largest subunit B220"
species:4932 "Saccharomyces cerevisiae" [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA;IMP] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 SGD:S000002299 GO:GO:0005739
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:X96876 EMBL:U27182
GO:GO:0003899 PDB:4GWQ PDBsum:4GWQ PDB:2LO6 PDBsum:2LO6
eggNOG:COG0086 GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83
PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO
PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V
PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I
PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT
PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM
PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL
PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV
PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD
PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N
PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D
PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L
PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50
PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV
PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA
PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM
PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63
PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5
PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT
PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92
PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI
PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM
PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU
PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ
PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y
PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD
PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16 PDBsum:3S17
PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D
PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E
PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K
PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
EMBL:X03128 EMBL:Z74188 PIR:S67686 RefSeq:NP_010141.1 PDB:2L0I
PDBsum:2L0I ProteinModelPortal:P04050 SMR:P04050 DIP:DIP-611N
IntAct:P04050 MINT:MINT-432838 STRING:P04050 PaxDb:P04050
PeptideAtlas:P04050 EnsemblFungi:YDL140C GeneID:851415
KEGG:sce:YDL140C CYGD:YDL140c GeneTree:ENSGT00700000105212
EvolutionaryTrace:P04050 NextBio:968606 ArrayExpress:P04050
Genevestigator:P04050 GermOnline:YDL140C Uniprot:P04050
Length = 1733
Score = 351 (128.6 bits), Expect = 7.9e-94, Sum P(7) = 7.9e-94
Identities = 64/134 (47%), Positives = 96/134 (71%)
Query: 907 NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
N + M +G+KGS +N Q+S+ +GQQ +EGKR+ +TLP F D++P + GF+
Sbjct: 741 NNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFV 800
Query: 967 IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
+ +L GL PQE++FH M GREGL+DTAVKT+ +GY+QR L+K LE + + YD + R++
Sbjct: 801 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSL 860
Query: 1027 GSIVQFCYGEDGVD 1040
G+++QF YGEDG+D
Sbjct: 861 GNVIQFIYGEDGMD 874
Score = 262 (97.3 bits), Expect = 7.9e-94, Sum P(7) = 7.9e-94
Identities = 54/118 (45%), Positives = 72/118 (61%)
Query: 490 GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
G V RH+ D D VL NRQP+LHK S+MAH V+V+ T R++ + S YNADFDGDEM
Sbjct: 429 GWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIP-YSTFRLNLSVTSPYNADFDGDEM 487
Query: 550 NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDE 607
N+H PQ E +RAE + Q V P + P ++QD + LT +DTF+ D+
Sbjct: 488 NLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQ 545
Score = 213 (80.0 bits), Expect = 7.9e-94, Sum P(7) = 7.9e-94
Identities = 46/88 (52%), Positives = 62/88 (70%)
Query: 1122 MAKQDF---LKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTL 1178
+ KQ F L ++ +F+ S+ PGE VG+LA+QS+GEP+TQMTLNTFH AG VT
Sbjct: 1037 LTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTS 1096
Query: 1179 GIPRLQEILTIASKDIKTPVITCPLLVG 1206
G+PRL+EIL +A K++KTP +T L G
Sbjct: 1097 GVPRLKEILNVA-KNMKTPSLTVYLEPG 1123
Score = 211 (79.3 bits), Expect = 7.9e-94, Sum P(7) = 7.9e-94
Identities = 69/201 (34%), Positives = 98/201 (48%)
Query: 257 NEFELCSFISDMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVM-EHPQTVLLS 314
N F+ S + D GF + + + L VPP R +S E T L+
Sbjct: 209 NIFKHIS-VKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLA 267
Query: 315 KVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRD--MASG-----I 367
+L+ANI L N + + A + LQ V D + AGQ SG I
Sbjct: 268 DILKANISLETLEHNGAPHHAIEEAESL-LQFHVATYMDN-DIAGQPQALQKSGRPVKSI 325
Query: 368 CQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNV 427
L+ KEG R LMGKRV+++ R+VIS DP L ++++G+P A LTYPE VTP+N+
Sbjct: 326 RARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNI 385
Query: 428 VKLRDSIINGAEIHPGATHYL 448
+L + NG HPGA + +
Sbjct: 386 DRLTQLVRNGPNEHPGAKYVI 406
Score = 100 (40.3 bits), Expect = 7.9e-94, Sum P(7) = 7.9e-94
Identities = 29/117 (24%), Positives = 49/117 (41%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFC------HHFKASRREV 54
C+TC + CPGHFGHIDL PV++ + +C C H + R+ +
Sbjct: 67 CQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQAL 126
Query: 55 EKCVRKLELIIKGDIIAAKSL-DLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVR 110
K + K + + D+PSE +P + + ++ C P D ++
Sbjct: 127 AIKDSKKRFAAIWTLCKTKMVCETDVPSED-DP--TQLVSRGGCGNTQPTIRKDGLK 180
Score = 77 (32.2 bits), Expect = 7.9e-94, Sum P(7) = 7.9e-94
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 642 VLPLLPAIWKPEPLWTGKQVIT-AVLN--HITR 671
V+P PAI KP+PLW+GKQ+++ A+ N H+ R
Sbjct: 559 VIPT-PAIIKPKPLWSGKQILSVAIPNGIHLQR 590
Score = 66 (28.3 bits), Expect = 7.9e-94, Sum P(7) = 7.9e-94
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 754 IYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
I ++ GV++K ++ GL+H V G L + ++ +L +GF+ G+
Sbjct: 607 IIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGI 666
Query: 812 DDLL 815
D +
Sbjct: 667 GDTI 670
>UNIPROTKB|J9NW09 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 EMBL:AAEX03003616 EMBL:AAEX03003617
Ensembl:ENSCAFT00000050029 Uniprot:J9NW09
Length = 1789
Score = 351 (128.6 bits), Expect = 1.3e-93, Sum P(7) = 1.3e-93
Identities = 65/135 (48%), Positives = 92/135 (68%)
Query: 912 MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
M SGAKGSK+N Q+ + +GQQ +EGKR+P +TLP F D+ P + GF+ + +L
Sbjct: 769 MVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYL 828
Query: 972 TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
GL P E++FH M GREGL+DTAVKT+ +GY+QR LIK++E + + YD +VR++ +VQ
Sbjct: 829 AGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQ 888
Query: 1032 FCYGEDGVDVHQTSF 1046
YGEDG+ F
Sbjct: 889 LRYGEDGLAGESVEF 903
Score = 274 (101.5 bits), Expect = 1.3e-93, Sum P(7) = 1.3e-93
Identities = 56/127 (44%), Positives = 76/127 (59%)
Query: 482 KDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTY 540
K SD + G V RH+ DGD+V+ NRQPTLHK S+M H VR+L T R++ + + Y
Sbjct: 434 KPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS-TFRLNLSVTTPY 492
Query: 541 NADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKD 600
NADFDGDEMN+H PQ +RAE + V P + P+ ++QD + + TK+D
Sbjct: 493 NADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRD 552
Query: 601 TFLNRDE 607
FL R E
Sbjct: 553 VFLERGE 559
Score = 218 (81.8 bits), Expect = 1.3e-93, Sum P(7) = 1.3e-93
Identities = 50/96 (52%), Positives = 67/96 (69%)
Query: 1110 AEKFADKF-LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHL 1168
+ + A++F LS E A L ++ KF ++A PGE VG LA+QS+GEP+TQMTLNTFH
Sbjct: 1051 SRRMAEEFRLSGE-AFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHY 1109
Query: 1169 AGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
AG NVTLG+PRL+E++ I+ K KTP +T LL
Sbjct: 1110 AGVSAKNVTLGVPRLKELINISKKP-KTPSLTVFLL 1144
Score = 199 (75.1 bits), Expect = 1.3e-93, Sum P(7) = 1.3e-93
Identities = 68/244 (27%), Positives = 123/244 (50%)
Query: 242 LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
L P V +I +++ + E C F+ M+ + A + V+ VPP+ R P+
Sbjct: 216 LSPERVHEIFKRISDEE---C-FVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266
Query: 300 GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV-IVARWMNLQQ-SVNVLFDGKNA 357
G + + T L+ +++ N L N+ + A ++A + L Q V + D +
Sbjct: 267 QGSARNQDDLTHKLADIVKINNQLRR---NEQNGAAAHVIAEDVKLLQFHVATMVDNELP 323
Query: 358 AGQRDMA-SG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
R M SG + Q L+ KEG R LMGKRV+++ R+VI+PDP L+++++G+P
Sbjct: 324 GLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRS 383
Query: 412 FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIG 467
A +T+ E VTP+N+ +L++ + G +PGA + + D++ P + + G
Sbjct: 384 IAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTG 443
Query: 468 RKLD 471
K++
Sbjct: 444 YKVE 447
Score = 111 (44.1 bits), Expect = 1.3e-93, Sum P(7) = 1.3e-93
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFC 44
C+TC CPGHFGHI+L PV++ + +CFFC
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114
Score = 79 (32.9 bits), Expect = 1.3e-93, Sum P(7) = 1.3e-93
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 647 PAIWKPEPLWTGKQVITAVL-NHI 669
PAI KP PLWTGKQ+ + ++ HI
Sbjct: 577 PAILKPRPLWTGKQIFSLIIPGHI 600
Score = 48 (22.0 bits), Expect = 1.6e-50, Sum P(4) = 1.6e-50
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 852 DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL 895
D +K+ +++ + + G A V D+K+ L H ++ V NEL
Sbjct: 282 DIVKINNQLRRNEQNGAAAHVIAEDVKL---LQFHVATMVDNEL 322
Score = 47 (21.6 bits), Expect = 1.3e-93, Sum P(7) = 1.3e-93
Identities = 19/102 (18%), Positives = 41/102 (40%)
Query: 754 IYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
+ +L+ G++ K LVH G + S + + +L + G T G+
Sbjct: 630 VENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGI 689
Query: 812 DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
D + ++ +N + + K+ +E +E E++P
Sbjct: 690 GDSIADSKTYQDIQNTIKKA----KQDVIEVIEKAHNNELEP 727
Score = 46 (21.3 bits), Expect = 4.5e-66, Sum P(5) = 4.5e-66
Identities = 30/133 (22%), Positives = 54/133 (40%)
Query: 485 DNEFEGKMVYRHLQDGD--VVLVNRQ---PTLHKPSI------MAHVVRVLKGEKTLRMH 533
D+E G Y+H+ GD VV+ N + L K S+ + H+ + G R+
Sbjct: 611 DDEDSGP--YKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLF 668
Query: 534 YANCSTY-N------------ADFDGDEMNVHFPQDEVSRA--EAYNIVN-ANNQYVRPS 577
Y+N T N D D Q+ + +A + ++ A+N + P+
Sbjct: 669 YSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPT 728
Query: 578 NGDPLRSLIQDHI 590
G+ LR ++ +
Sbjct: 729 PGNTLRQTFENQV 741
Score = 39 (18.8 bits), Expect = 2.9e-53, Sum P(6) = 2.9e-53
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 360 QRDMASGICQLLEKKEGLFRQKLMGKRV 387
+R M G + ++ L + +MG RV
Sbjct: 447 ERHMCDGDIVIFNRQPTLHKMSMMGHRV 474
Score = 39 (18.8 bits), Expect = 1.3e-49, Sum P(4) = 1.3e-49
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 246 DVKDIIEKLWENEFE 260
DV ++IEK NE E
Sbjct: 712 DVIEVIEKAHNNELE 726
>UNIPROTKB|F1PGS0 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:AAEX03003616
EMBL:AAEX03003617 Ensembl:ENSCAFT00000026237 Uniprot:F1PGS0
Length = 1969
Score = 351 (128.6 bits), Expect = 3.2e-93, Sum P(7) = 3.2e-93
Identities = 65/135 (48%), Positives = 92/135 (68%)
Query: 912 MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
M SGAKGSK+N Q+ + +GQQ +EGKR+P +TLP F D+ P + GF+ + +L
Sbjct: 769 MVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYL 828
Query: 972 TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
GL P E++FH M GREGL+DTAVKT+ +GY+QR LIK++E + + YD +VR++ +VQ
Sbjct: 829 AGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQ 888
Query: 1032 FCYGEDGVDVHQTSF 1046
YGEDG+ F
Sbjct: 889 LRYGEDGLAGESVEF 903
Score = 274 (101.5 bits), Expect = 3.2e-93, Sum P(7) = 3.2e-93
Identities = 56/127 (44%), Positives = 76/127 (59%)
Query: 482 KDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTY 540
K SD + G V RH+ DGD+V+ NRQPTLHK S+M H VR+L T R++ + + Y
Sbjct: 434 KPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS-TFRLNLSVTTPY 492
Query: 541 NADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKD 600
NADFDGDEMN+H PQ +RAE + V P + P+ ++QD + + TK+D
Sbjct: 493 NADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRD 552
Query: 601 TFLNRDE 607
FL R E
Sbjct: 553 VFLERGE 559
Score = 218 (81.8 bits), Expect = 3.2e-93, Sum P(7) = 3.2e-93
Identities = 50/96 (52%), Positives = 67/96 (69%)
Query: 1110 AEKFADKF-LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHL 1168
+ + A++F LS E A L ++ KF ++A PGE VG LA+QS+GEP+TQMTLNTFH
Sbjct: 1051 SRRMAEEFRLSGE-AFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHY 1109
Query: 1169 AGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
AG NVTLG+PRL+E++ I+ K KTP +T LL
Sbjct: 1110 AGVSAKNVTLGVPRLKELINISKKP-KTPSLTVFLL 1144
Score = 199 (75.1 bits), Expect = 3.2e-93, Sum P(7) = 3.2e-93
Identities = 68/244 (27%), Positives = 123/244 (50%)
Query: 242 LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
L P V +I +++ + E C F+ M+ + A + V+ VPP+ R P+
Sbjct: 216 LSPERVHEIFKRISDEE---C-FVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266
Query: 300 GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV-IVARWMNLQQ-SVNVLFDGKNA 357
G + + T L+ +++ N L N+ + A ++A + L Q V + D +
Sbjct: 267 QGSARNQDDLTHKLADIVKINNQLRR---NEQNGAAAHVIAEDVKLLQFHVATMVDNELP 323
Query: 358 AGQRDMA-SG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
R M SG + Q L+ KEG R LMGKRV+++ R+VI+PDP L+++++G+P
Sbjct: 324 GLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRS 383
Query: 412 FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIG 467
A +T+ E VTP+N+ +L++ + G +PGA + + D++ P + + G
Sbjct: 384 IAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTG 443
Query: 468 RKLD 471
K++
Sbjct: 444 YKVE 447
Score = 111 (44.1 bits), Expect = 3.2e-93, Sum P(7) = 3.2e-93
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFC 44
C+TC CPGHFGHI+L PV++ + +CFFC
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114
Score = 79 (32.9 bits), Expect = 3.2e-93, Sum P(7) = 3.2e-93
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 647 PAIWKPEPLWTGKQVITAVL-NHI 669
PAI KP PLWTGKQ+ + ++ HI
Sbjct: 577 PAILKPRPLWTGKQIFSLIIPGHI 600
Score = 48 (22.0 bits), Expect = 2.6e-50, Sum P(4) = 2.6e-50
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 852 DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL 895
D +K+ +++ + + G A V D+K+ L H ++ V NEL
Sbjct: 282 DIVKINNQLRRNEQNGAAAHVIAEDVKL---LQFHVATMVDNEL 322
Score = 47 (21.6 bits), Expect = 3.2e-93, Sum P(7) = 3.2e-93
Identities = 19/102 (18%), Positives = 41/102 (40%)
Query: 754 IYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
+ +L+ G++ K LVH G + S + + +L + G T G+
Sbjct: 630 VENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGI 689
Query: 812 DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
D + ++ +N + + K+ +E +E E++P
Sbjct: 690 GDSIADSKTYQDIQNTIKKA----KQDVIEVIEKAHNNELEP 727
Score = 46 (21.3 bits), Expect = 8.4e-66, Sum P(5) = 8.4e-66
Identities = 30/133 (22%), Positives = 54/133 (40%)
Query: 485 DNEFEGKMVYRHLQDGD--VVLVNRQ---PTLHKPSI------MAHVVRVLKGEKTLRMH 533
D+E G Y+H+ GD VV+ N + L K S+ + H+ + G R+
Sbjct: 611 DDEDSGP--YKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLF 668
Query: 534 YANCSTY-N------------ADFDGDEMNVHFPQDEVSRA--EAYNIVN-ANNQYVRPS 577
Y+N T N D D Q+ + +A + ++ A+N + P+
Sbjct: 669 YSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPT 728
Query: 578 NGDPLRSLIQDHI 590
G+ LR ++ +
Sbjct: 729 PGNTLRQTFENQV 741
Score = 39 (18.8 bits), Expect = 6.0e-53, Sum P(6) = 6.0e-53
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 360 QRDMASGICQLLEKKEGLFRQKLMGKRV 387
+R M G + ++ L + +MG RV
Sbjct: 447 ERHMCDGDIVIFNRQPTLHKMSMMGHRV 474
Score = 39 (18.8 bits), Expect = 2.2e-49, Sum P(4) = 2.2e-49
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 246 DVKDIIEKLWENEFE 260
DV ++IEK NE E
Sbjct: 712 DVIEVIEKAHNNELE 726
>RGD|1587326 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 RGD:1587326 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 KO:K03006 CTD:5430 OrthoDB:EOG4JWVCM
IPI:IPI00952328 RefSeq:XP_001079162.1 RefSeq:XP_343923.3
UniGene:Rn.163136 Ensembl:ENSRNOT00000068013 GeneID:363633
KEGG:rno:363633 UCSC:RGD:1587326 NextBio:683839 ArrayExpress:D4A5A6
Uniprot:D4A5A6
Length = 1970
Score = 351 (128.6 bits), Expect = 3.2e-93, Sum P(7) = 3.2e-93
Identities = 65/135 (48%), Positives = 92/135 (68%)
Query: 912 MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
M SGAKGSK+N Q+ + +GQQ +EGKR+P +TLP F D+ P + GF+ + +L
Sbjct: 769 MVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYL 828
Query: 972 TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
GL P E++FH M GREGL+DTAVKT+ +GY+QR LIK++E + + YD +VR++ +VQ
Sbjct: 829 AGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQ 888
Query: 1032 FCYGEDGVDVHQTSF 1046
YGEDG+ F
Sbjct: 889 LRYGEDGLAGESVEF 903
Score = 274 (101.5 bits), Expect = 3.2e-93, Sum P(7) = 3.2e-93
Identities = 56/127 (44%), Positives = 76/127 (59%)
Query: 482 KDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTY 540
K SD + G V RH+ DGD+V+ NRQPTLHK S+M H VR+L T R++ + + Y
Sbjct: 434 KPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS-TFRLNLSVTTPY 492
Query: 541 NADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKD 600
NADFDGDEMN+H PQ +RAE + V P + P+ ++QD + + TK+D
Sbjct: 493 NADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRD 552
Query: 601 TFLNRDE 607
FL R E
Sbjct: 553 VFLERGE 559
Score = 218 (81.8 bits), Expect = 3.2e-93, Sum P(7) = 3.2e-93
Identities = 50/96 (52%), Positives = 67/96 (69%)
Query: 1110 AEKFADKF-LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHL 1168
+ + A++F LS E A L ++ KF ++A PGE VG LA+QS+GEP+TQMTLNTFH
Sbjct: 1051 SRRMAEEFRLSGE-AFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHY 1109
Query: 1169 AGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
AG NVTLG+PRL+E++ I+ K KTP +T LL
Sbjct: 1110 AGVSAKNVTLGVPRLKELINISKKP-KTPSLTVFLL 1144
Score = 199 (75.1 bits), Expect = 3.2e-93, Sum P(7) = 3.2e-93
Identities = 68/244 (27%), Positives = 123/244 (50%)
Query: 242 LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
L P V +I +++ + E C F+ M+ + A + V+ VPP+ R P+
Sbjct: 216 LSPERVHEIFKRISDEE---C-FVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266
Query: 300 GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV-IVARWMNLQQ-SVNVLFDGKNA 357
G + + T L+ +++ N L N+ + A ++A + L Q V + D +
Sbjct: 267 QGSARNQDDLTHKLADIVKINNQLRR---NEQNGAAAHVIAEDVKLLQFHVATMVDNELP 323
Query: 358 AGQRDMA-SG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
R M SG + Q L+ KEG R LMGKRV+++ R+VI+PDP L+++++G+P
Sbjct: 324 GLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRS 383
Query: 412 FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIG 467
A +T+ E VTP+N+ +L++ + G +PGA + + D++ P + + G
Sbjct: 384 IAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTG 443
Query: 468 RKLD 471
K++
Sbjct: 444 YKVE 447
Score = 111 (44.1 bits), Expect = 3.2e-93, Sum P(7) = 3.2e-93
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFC 44
C+TC CPGHFGHI+L PV++ + +CFFC
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114
Score = 79 (32.9 bits), Expect = 3.2e-93, Sum P(7) = 3.2e-93
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 647 PAIWKPEPLWTGKQVITAVL-NHI 669
PAI KP PLWTGKQ+ + ++ HI
Sbjct: 577 PAILKPRPLWTGKQIFSLIIPGHI 600
Score = 48 (22.0 bits), Expect = 2.6e-50, Sum P(4) = 2.6e-50
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 852 DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL 895
D +K+ +++ + + G A V D+K+ L H ++ V NEL
Sbjct: 282 DIVKINNQLRRNEQNGAAAHVIAEDVKL---LQFHVATMVDNEL 322
Score = 47 (21.6 bits), Expect = 3.2e-93, Sum P(7) = 3.2e-93
Identities = 19/102 (18%), Positives = 41/102 (40%)
Query: 754 IYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
+ +L+ G++ K LVH G + S + + +L + G T G+
Sbjct: 630 VENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGI 689
Query: 812 DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
D + ++ +N + + K+ +E +E E++P
Sbjct: 690 GDSIADSKTYQDIQNTIKKA----KQDVIEVIEKAHNNELEP 727
Score = 46 (21.3 bits), Expect = 8.4e-66, Sum P(5) = 8.4e-66
Identities = 30/133 (22%), Positives = 54/133 (40%)
Query: 485 DNEFEGKMVYRHLQDGD--VVLVNRQ---PTLHKPSI------MAHVVRVLKGEKTLRMH 533
D+E G Y+H+ GD VV+ N + L K S+ + H+ + G R+
Sbjct: 611 DDEDSGP--YKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVTRLF 668
Query: 534 YANCSTY-N------------ADFDGDEMNVHFPQDEVSRA--EAYNIVN-ANNQYVRPS 577
Y+N T N D D Q+ + +A + ++ A+N + P+
Sbjct: 669 YSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPT 728
Query: 578 NGDPLRSLIQDHI 590
G+ LR ++ +
Sbjct: 729 PGNTLRQTFENQV 741
Score = 39 (18.8 bits), Expect = 6.0e-53, Sum P(6) = 6.0e-53
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 360 QRDMASGICQLLEKKEGLFRQKLMGKRV 387
+R M G + ++ L + +MG RV
Sbjct: 447 ERHMCDGDIVIFNRQPTLHKMSMMGHRV 474
Score = 39 (18.8 bits), Expect = 2.2e-49, Sum P(4) = 2.2e-49
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 246 DVKDIIEKLWENEFE 260
DV ++IEK NE E
Sbjct: 712 DVIEVIEKAHNNELE 726
>UNIPROTKB|G3MZY8 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:DAAA02048777
EMBL:DAAA02048778 EMBL:DAAA02048779 EMBL:DAAA02048780
EMBL:DAAA02048781 Ensembl:ENSBTAT00000064788 Uniprot:G3MZY8
Length = 1970
Score = 351 (128.6 bits), Expect = 4.1e-93, Sum P(7) = 4.1e-93
Identities = 65/135 (48%), Positives = 92/135 (68%)
Query: 912 MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
M SGAKGSK+N Q+ + +GQQ +EGKR+P +TLP F D+ P + GF+ + +L
Sbjct: 769 MVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYL 828
Query: 972 TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
GL P E++FH M GREGL+DTAVKT+ +GY+QR LIK++E + + YD +VR++ +VQ
Sbjct: 829 AGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQ 888
Query: 1032 FCYGEDGVDVHQTSF 1046
YGEDG+ F
Sbjct: 889 LRYGEDGLAGESVEF 903
Score = 274 (101.5 bits), Expect = 4.1e-93, Sum P(7) = 4.1e-93
Identities = 56/127 (44%), Positives = 76/127 (59%)
Query: 482 KDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTY 540
K SD + G V RH+ DGD+V+ NRQPTLHK S+M H VR+L T R++ + + Y
Sbjct: 434 KPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS-TFRLNLSVTTPY 492
Query: 541 NADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKD 600
NADFDGDEMN+H PQ +RAE + V P + P+ ++QD + + TK+D
Sbjct: 493 NADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRD 552
Query: 601 TFLNRDE 607
FL R E
Sbjct: 553 VFLERGE 559
Score = 218 (81.8 bits), Expect = 4.1e-93, Sum P(7) = 4.1e-93
Identities = 50/96 (52%), Positives = 67/96 (69%)
Query: 1110 AEKFADKF-LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHL 1168
+ + A++F LS E A L ++ KF ++A PGE VG LA+QS+GEP+TQMTLNTFH
Sbjct: 1051 SRRMAEEFRLSGE-AFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHY 1109
Query: 1169 AGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
AG NVTLG+PRL+E++ I+ K KTP +T LL
Sbjct: 1110 AGVSAKNVTLGVPRLKELINISKKP-KTPSLTVFLL 1144
Score = 199 (75.1 bits), Expect = 4.1e-93, Sum P(7) = 4.1e-93
Identities = 68/244 (27%), Positives = 123/244 (50%)
Query: 242 LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
L P V +I +++ + E C F+ M+ + A + V+ VPP+ R P+
Sbjct: 216 LSPERVHEIFKRISDEE---C-FVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266
Query: 300 GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV-IVARWMNLQQ-SVNVLFDGKNA 357
G + + T L+ +++ N L N+ + A ++A + L Q V + D +
Sbjct: 267 QGSARNQDDLTHKLADIVKINNQLRR---NEQNGAAAHVIAEDVKLLQFHVATMVDNELP 323
Query: 358 AGQRDMA-SG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
R M SG + Q L+ KEG R LMGKRV+++ R+VI+PDP L+++++G+P
Sbjct: 324 GLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRS 383
Query: 412 FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIG 467
A +T+ E VTP+N+ +L++ + G +PGA + + D++ P + + G
Sbjct: 384 IAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTG 443
Query: 468 RKLD 471
K++
Sbjct: 444 YKVE 447
Score = 111 (44.1 bits), Expect = 4.1e-93, Sum P(7) = 4.1e-93
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFC 44
C+TC CPGHFGHI+L PV++ + +CFFC
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114
Score = 79 (32.9 bits), Expect = 4.1e-93, Sum P(7) = 4.1e-93
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 647 PAIWKPEPLWTGKQVITAVL-NHI 669
PAI KP PLWTGKQ+ + ++ HI
Sbjct: 577 PAILKPRPLWTGKQIFSLIIPGHI 600
Score = 48 (22.0 bits), Expect = 2.6e-50, Sum P(4) = 2.6e-50
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 852 DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL 895
D +K+ +++ + + G A V D+K+ L H ++ V NEL
Sbjct: 282 DIVKINNQLRRNEQNGAAAHVIAEDVKL---LQFHVATMVDNEL 322
Score = 46 (21.3 bits), Expect = 4.1e-93, Sum P(7) = 4.1e-93
Identities = 19/102 (18%), Positives = 41/102 (40%)
Query: 754 IYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
+ +L+ G++ K LVH G + S + + +L + G T G+
Sbjct: 630 VENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGI 689
Query: 812 DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
D + ++ +N + + K+ +E +E E++P
Sbjct: 690 GDSIADSKTYQDIQNTIKKA----KQDVIEVIEKAHNNELEP 727
Score = 39 (18.8 bits), Expect = 7.6e-53, Sum P(6) = 7.6e-53
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 360 QRDMASGICQLLEKKEGLFRQKLMGKRV 387
+R M G + ++ L + +MG RV
Sbjct: 447 ERHMCDGDIVIFNRQPTLHKMSMMGHRV 474
Score = 39 (18.8 bits), Expect = 2.2e-49, Sum P(4) = 2.2e-49
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 246 DVKDIIEKLWENEFE 260
DV ++IEK NE E
Sbjct: 712 DVIEVIEKAHNNELE 726
Score = 38 (18.4 bits), Expect = 5.7e-65, Sum P(5) = 5.7e-65
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 566 IVNANNQYVRPSNGDPLRSLIQDHI 590
I A+N + P+ G+ LR ++ +
Sbjct: 717 IEKAHNNELEPTPGNTLRQTFENQV 741
>UNIPROTKB|P24928 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase II subunit RPB1"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003677 "DNA binding" evidence=NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0006366
"transcription from RNA polymerase II promoter"
evidence=IDA;NAS;TAS] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IDA] [GO:0004672 "protein kinase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0031625 "ubiquitin protein ligase binding" evidence=IPI]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 Reactome:REACT_116125
EMBL:CH471108 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0006368
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006367 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 EMBL:AC113189 GO:GO:0003899 PDB:2GHQ PDB:2GHT
PDBsum:2GHQ PDBsum:2GHT eggNOG:COG0086 GO:GO:0003968 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X63564 EMBL:X74874
EMBL:X74873 EMBL:X74872 EMBL:X74871 EMBL:X74870 EMBL:BC137231
IPI:IPI00031627 PIR:I38186 PIR:S21054 RefSeq:NP_000928.1
UniGene:Hs.270017 PDB:2LTO PDBsum:2LTO ProteinModelPortal:P24928
SMR:P24928 DIP:DIP-29011N IntAct:P24928 MINT:MINT-156582
STRING:P24928 PhosphoSite:P24928 DMDM:281185484 PaxDb:P24928
PRIDE:P24928 Ensembl:ENST00000322644 GeneID:5430 KEGG:hsa:5430
UCSC:uc002ghf.4 CTD:5430 GeneCards:GC17P007387 H-InvDB:HIX0173727
HGNC:HGNC:9187 HPA:CAB012226 HPA:CAB016388 HPA:CAB022311
HPA:HPA021563 MIM:180660 neXtProt:NX_P24928 PharmGKB:PA33507
HOVERGEN:HBG004339 InParanoid:P24928 OrthoDB:EOG4JWVCM
BindingDB:P24928 ChEMBL:CHEMBL1641353 ChiTaRS:POLR2A
EvolutionaryTrace:P24928 GenomeRNAi:5430 NextBio:21009
ArrayExpress:P24928 Bgee:P24928 CleanEx:HS_POLR2A
Genevestigator:P24928 GermOnline:ENSG00000181222 Uniprot:P24928
Length = 1970
Score = 351 (128.6 bits), Expect = 4.1e-93, Sum P(7) = 4.1e-93
Identities = 65/135 (48%), Positives = 92/135 (68%)
Query: 912 MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
M SGAKGSK+N Q+ + +GQQ +EGKR+P +TLP F D+ P + GF+ + +L
Sbjct: 769 MVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYL 828
Query: 972 TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
GL P E++FH M GREGL+DTAVKT+ +GY+QR LIK++E + + YD +VR++ +VQ
Sbjct: 829 AGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQ 888
Query: 1032 FCYGEDGVDVHQTSF 1046
YGEDG+ F
Sbjct: 889 LRYGEDGLAGESVEF 903
Score = 274 (101.5 bits), Expect = 4.1e-93, Sum P(7) = 4.1e-93
Identities = 56/127 (44%), Positives = 76/127 (59%)
Query: 482 KDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTY 540
K SD + G V RH+ DGD+V+ NRQPTLHK S+M H VR+L T R++ + + Y
Sbjct: 434 KPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS-TFRLNLSVTTPY 492
Query: 541 NADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKD 600
NADFDGDEMN+H PQ +RAE + V P + P+ ++QD + + TK+D
Sbjct: 493 NADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRD 552
Query: 601 TFLNRDE 607
FL R E
Sbjct: 553 VFLERGE 559
Score = 218 (81.8 bits), Expect = 4.1e-93, Sum P(7) = 4.1e-93
Identities = 50/96 (52%), Positives = 67/96 (69%)
Query: 1110 AEKFADKF-LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHL 1168
+ + A++F LS E A L ++ KF ++A PGE VG LA+QS+GEP+TQMTLNTFH
Sbjct: 1051 SRRMAEEFRLSGE-AFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHY 1109
Query: 1169 AGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
AG NVTLG+PRL+E++ I+ K KTP +T LL
Sbjct: 1110 AGVSAKNVTLGVPRLKELINISKKP-KTPSLTVFLL 1144
Score = 199 (75.1 bits), Expect = 4.1e-93, Sum P(7) = 4.1e-93
Identities = 68/244 (27%), Positives = 123/244 (50%)
Query: 242 LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
L P V +I +++ + E C F+ M+ + A + V+ VPP+ R P+
Sbjct: 216 LSPERVHEIFKRISDEE---C-FVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266
Query: 300 GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV-IVARWMNLQQ-SVNVLFDGKNA 357
G + + T L+ +++ N L N+ + A ++A + L Q V + D +
Sbjct: 267 QGSARNQDDLTHKLADIVKINNQLRR---NEQNGAAAHVIAEDVKLLQFHVATMVDNELP 323
Query: 358 AGQRDMA-SG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
R M SG + Q L+ KEG R LMGKRV+++ R+VI+PDP L+++++G+P
Sbjct: 324 GLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRS 383
Query: 412 FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIG 467
A +T+ E VTP+N+ +L++ + G +PGA + + D++ P + + G
Sbjct: 384 IAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTG 443
Query: 468 RKLD 471
K++
Sbjct: 444 YKVE 447
Score = 111 (44.1 bits), Expect = 4.1e-93, Sum P(7) = 4.1e-93
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFC 44
C+TC CPGHFGHI+L PV++ + +CFFC
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114
Score = 79 (32.9 bits), Expect = 4.1e-93, Sum P(7) = 4.1e-93
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 647 PAIWKPEPLWTGKQVITAVL-NHI 669
PAI KP PLWTGKQ+ + ++ HI
Sbjct: 577 PAILKPRPLWTGKQIFSLIIPGHI 600
Score = 48 (22.0 bits), Expect = 2.6e-50, Sum P(4) = 2.6e-50
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 852 DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL 895
D +K+ +++ + + G A V D+K+ L H ++ V NEL
Sbjct: 282 DIVKINNQLRRNEQNGAAAHVIAEDVKL---LQFHVATMVDNEL 322
Score = 46 (21.3 bits), Expect = 4.1e-93, Sum P(7) = 4.1e-93
Identities = 19/102 (18%), Positives = 41/102 (40%)
Query: 754 IYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
+ +L+ G++ K LVH G + S + + +L + G T G+
Sbjct: 630 VENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGI 689
Query: 812 DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
D + ++ +N + + K+ +E +E E++P
Sbjct: 690 GDSIADSKTYQDIQNTIKKA----KQDVIEVIEKAHNNELEP 727
Score = 39 (18.8 bits), Expect = 7.6e-53, Sum P(6) = 7.6e-53
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 360 QRDMASGICQLLEKKEGLFRQKLMGKRV 387
+R M G + ++ L + +MG RV
Sbjct: 447 ERHMCDGDIVIFNRQPTLHKMSMMGHRV 474
Score = 39 (18.8 bits), Expect = 2.2e-49, Sum P(4) = 2.2e-49
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 246 DVKDIIEKLWENEFE 260
DV ++IEK NE E
Sbjct: 712 DVIEVIEKAHNNELE 726
Score = 38 (18.4 bits), Expect = 5.7e-65, Sum P(5) = 5.7e-65
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 566 IVNANNQYVRPSNGDPLRSLIQDHI 590
I A+N + P+ G+ LR ++ +
Sbjct: 717 IEKAHNNELEPTPGNTLRQTFENQV 741
>MGI|MGI:98086 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide
A" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 MGI:MGI:98086
GO:GO:0046872 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
EMBL:AL603707 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 CTD:5430
HOVERGEN:HBG004339 OrthoDB:EOG4JWVCM ChiTaRS:POLR2A EMBL:M12130
EMBL:M14101 IPI:IPI00136207 PIR:A28490 RefSeq:NP_033115.1
UniGene:Mm.16533 DisProt:DP00181 ProteinModelPortal:P08775
SMR:P08775 DIP:DIP-46369N IntAct:P08775 STRING:P08775
PhosphoSite:P08775 PaxDb:P08775 PRIDE:P08775
Ensembl:ENSMUST00000058470 Ensembl:ENSMUST00000071213 GeneID:20020
KEGG:mmu:20020 UCSC:uc007jrj.1 InParanoid:Q5F298 NextBio:297535
Bgee:P08775 CleanEx:MM_POLR2A Genevestigator:P08775
GermOnline:ENSMUSG00000005198 Uniprot:P08775
Length = 1970
Score = 351 (128.6 bits), Expect = 4.1e-93, Sum P(7) = 4.1e-93
Identities = 65/135 (48%), Positives = 92/135 (68%)
Query: 912 MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
M SGAKGSK+N Q+ + +GQQ +EGKR+P +TLP F D+ P + GF+ + +L
Sbjct: 769 MVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYL 828
Query: 972 TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
GL P E++FH M GREGL+DTAVKT+ +GY+QR LIK++E + + YD +VR++ +VQ
Sbjct: 829 AGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQ 888
Query: 1032 FCYGEDGVDVHQTSF 1046
YGEDG+ F
Sbjct: 889 LRYGEDGLAGESVEF 903
Score = 274 (101.5 bits), Expect = 4.1e-93, Sum P(7) = 4.1e-93
Identities = 56/127 (44%), Positives = 76/127 (59%)
Query: 482 KDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTY 540
K SD + G V RH+ DGD+V+ NRQPTLHK S+M H VR+L T R++ + + Y
Sbjct: 434 KPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS-TFRLNLSVTTPY 492
Query: 541 NADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKD 600
NADFDGDEMN+H PQ +RAE + V P + P+ ++QD + + TK+D
Sbjct: 493 NADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRD 552
Query: 601 TFLNRDE 607
FL R E
Sbjct: 553 VFLERGE 559
Score = 218 (81.8 bits), Expect = 4.1e-93, Sum P(7) = 4.1e-93
Identities = 50/96 (52%), Positives = 67/96 (69%)
Query: 1110 AEKFADKF-LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHL 1168
+ + A++F LS E A L ++ KF ++A PGE VG LA+QS+GEP+TQMTLNTFH
Sbjct: 1051 SRRMAEEFRLSGE-AFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHY 1109
Query: 1169 AGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
AG NVTLG+PRL+E++ I+ K KTP +T LL
Sbjct: 1110 AGVSAKNVTLGVPRLKELINISKKP-KTPSLTVFLL 1144
Score = 199 (75.1 bits), Expect = 4.1e-93, Sum P(7) = 4.1e-93
Identities = 68/244 (27%), Positives = 123/244 (50%)
Query: 242 LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
L P V +I +++ + E C F+ M+ + A + V+ VPP+ R P+
Sbjct: 216 LSPERVHEIFKRISDEE---C-FVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266
Query: 300 GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV-IVARWMNLQQ-SVNVLFDGKNA 357
G + + T L+ +++ N L N+ + A ++A + L Q V + D +
Sbjct: 267 QGSARNQDDLTHKLADIVKINNQLRR---NEQNGAAAHVIAEDVKLLQFHVATMVDNELP 323
Query: 358 AGQRDMA-SG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
R M SG + Q L+ KEG R LMGKRV+++ R+VI+PDP L+++++G+P
Sbjct: 324 GLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRS 383
Query: 412 FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIG 467
A +T+ E VTP+N+ +L++ + G +PGA + + D++ P + + G
Sbjct: 384 IAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTG 443
Query: 468 RKLD 471
K++
Sbjct: 444 YKVE 447
Score = 111 (44.1 bits), Expect = 4.1e-93, Sum P(7) = 4.1e-93
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFC 44
C+TC CPGHFGHI+L PV++ + +CFFC
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114
Score = 79 (32.9 bits), Expect = 4.1e-93, Sum P(7) = 4.1e-93
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 647 PAIWKPEPLWTGKQVITAVL-NHI 669
PAI KP PLWTGKQ+ + ++ HI
Sbjct: 577 PAILKPRPLWTGKQIFSLIIPGHI 600
Score = 48 (22.0 bits), Expect = 2.6e-50, Sum P(4) = 2.6e-50
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 852 DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL 895
D +K+ +++ + + G A V D+K+ L H ++ V NEL
Sbjct: 282 DIVKINNQLRRNEQNGAAAHVIAEDVKL---LQFHVATMVDNEL 322
Score = 46 (21.3 bits), Expect = 4.1e-93, Sum P(7) = 4.1e-93
Identities = 19/102 (18%), Positives = 41/102 (40%)
Query: 754 IYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
+ +L+ G++ K LVH G + S + + +L + G T G+
Sbjct: 630 VENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGI 689
Query: 812 DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
D + ++ +N + + K+ +E +E E++P
Sbjct: 690 GDSIADSKTYQDIQNTIKKA----KQDVIEVIEKAHNNELEP 727
Score = 39 (18.8 bits), Expect = 7.6e-53, Sum P(6) = 7.6e-53
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 360 QRDMASGICQLLEKKEGLFRQKLMGKRV 387
+R M G + ++ L + +MG RV
Sbjct: 447 ERHMCDGDIVIFNRQPTLHKMSMMGHRV 474
Score = 39 (18.8 bits), Expect = 2.2e-49, Sum P(4) = 2.2e-49
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 246 DVKDIIEKLWENEFE 260
DV ++IEK NE E
Sbjct: 712 DVIEVIEKAHNNELE 726
Score = 38 (18.4 bits), Expect = 5.7e-65, Sum P(5) = 5.7e-65
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 566 IVNANNQYVRPSNGDPLRSLIQDHI 590
I A+N + P+ G+ LR ++ +
Sbjct: 717 IEKAHNNELEPTPGNTLRQTFENQV 741
>ZFIN|ZDB-GENE-041008-78 [details] [associations]
symbol:polr2a "polymerase (RNA) II (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 ZFIN:ZDB-GENE-041008-78 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0005665 GeneTree:ENSGT00700000104490 EMBL:AL929346
IPI:IPI00608319 Ensembl:ENSDART00000077495 Bgee:F1Q9K4
Uniprot:F1Q9K4
Length = 1965
Score = 344 (126.2 bits), Expect = 5.2e-93, Sum P(6) = 5.2e-93
Identities = 62/128 (48%), Positives = 91/128 (71%)
Query: 912 MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
M +G+KGSK+N Q+ + +GQQ +EGKR+P +TLP F D+ P + GF+ + +L
Sbjct: 766 MVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYL 825
Query: 972 TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
GL P E++FH M GREGL+DTAVKT+ +GY+QR LIK++E + + YD +VR++ +VQ
Sbjct: 826 AGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQ 885
Query: 1032 FCYGEDGV 1039
YGEDG+
Sbjct: 886 LRYGEDGL 893
Score = 272 (100.8 bits), Expect = 5.2e-93, Sum P(6) = 5.2e-93
Identities = 55/127 (43%), Positives = 76/127 (59%)
Query: 482 KDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTY 540
K SD + G V RH+ DGD+++ NRQPTLHK S+M H VR+L T R++ + + Y
Sbjct: 431 KPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWS-TFRLNLSVTTPY 489
Query: 541 NADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKD 600
NADFDGDEMN+H PQ +RAE + V P + P+ ++QD + + TK+D
Sbjct: 490 NADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRD 549
Query: 601 TFLNRDE 607
FL R E
Sbjct: 550 VFLERGE 556
Score = 216 (81.1 bits), Expect = 5.2e-93, Sum P(6) = 5.2e-93
Identities = 51/96 (53%), Positives = 67/96 (69%)
Query: 1110 AEKFADKF-LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHL 1168
+++ ++F LS E A L ++ KF S+A PGE VG LA+QS+GEP+TQMTLNTFH
Sbjct: 1048 SKRMTEEFRLSTE-AFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHY 1106
Query: 1169 AGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
AG NVTLG+PRL+E++ I SK KTP +T LL
Sbjct: 1107 AGVSAKNVTLGVPRLKELINI-SKRPKTPSLTVFLL 1141
Score = 211 (79.3 bits), Expect = 5.2e-93, Sum P(6) = 5.2e-93
Identities = 95/348 (27%), Positives = 159/348 (45%)
Query: 145 AKNPRISKPTFGWIHMNGMPHADIRA--NLIRGCNLGETFSGGEE-EKDLGA----SSDV 197
A NP+I K G P + +L +G N+ E GGEE + G S D+
Sbjct: 119 ANNPKI-KDIL--TKSKGQPRKRLTHVYDLCKGKNICE---GGEEMDNKFGVEQPESEDI 172
Query: 198 DAPETHSFNGTF-PGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWE 256
+ H G + P + + + + V +++K L S P V +I +++ +
Sbjct: 173 TKEKGHGGCGRYQPRIRRSGLELYAEWKH-VNEDSQEKKILLS----PERVHEIFKRIAD 227
Query: 257 NEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVMEHPQTVLLS 314
E I M K A + V+ VPP+ R P+ G + + T L+
Sbjct: 228 EE----DIILGMDP----KYARPEWMIVTVLPVPPLAVR-PAVVMQGSARNQDDLTHKLA 278
Query: 315 KVLQANIYLANAYVNQPDNAKVIVARWMNLQQ-SVNVLFDGKNAAGQRDMA-SG-----I 367
+++ N L Q A ++A + L Q V + D + R M SG I
Sbjct: 279 DIVKINNQLKRN--EQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSI 336
Query: 368 CQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNV 427
Q L+ KEG R LMGKRV+++ R+VI+PDP L ++++G+P A +T+PE VTP+N+
Sbjct: 337 KQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNI 396
Query: 428 VKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRKLD 471
+L++ + G +PGA + + D++ P + + IG K++
Sbjct: 397 DRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVE 444
Score = 111 (44.1 bits), Expect = 5.2e-93, Sum P(6) = 5.2e-93
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFC 44
C+TC CPGHFGHI+L PV++ + +CFFC
Sbjct: 69 CQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFC 112
Score = 79 (32.9 bits), Expect = 5.2e-93, Sum P(6) = 5.2e-93
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 647 PAIWKPEPLWTGKQVITAVL-NHI 669
PAI KP PLWTGKQ+ + ++ HI
Sbjct: 574 PAILKPRPLWTGKQIFSLIIPGHI 597
Score = 49 (22.3 bits), Expect = 1.5e-48, Sum P(5) = 1.5e-48
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 852 DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL 895
D +K+ +++++ + G A V D+K+ L H ++ V NEL
Sbjct: 279 DIVKINNQLKRNEQSGAAAHVIAEDVKL---LQFHVATMVDNEL 319
Score = 39 (18.8 bits), Expect = 2.0e-48, Sum P(4) = 2.0e-48
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 246 DVKDIIEKLWENEFE 260
DV ++IEK NE E
Sbjct: 709 DVIEVIEKAHNNELE 723
Score = 38 (18.4 bits), Expect = 3.0e-65, Sum P(5) = 3.0e-65
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 566 IVNANNQYVRPSNGDPLRSLIQDHI 590
I A+N + P+ G+ LR ++ +
Sbjct: 714 IEKAHNNELEPTPGNTLRQTFENQV 738
Score = 38 (18.4 bits), Expect = 1.5e-48, Sum P(5) = 1.5e-48
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 825 KNHLHGSEEIGKRVHLEALELED 847
KN G EE+ + +E E ED
Sbjct: 149 KNICEGGEEMDNKFGVEQPESED 171
Score = 37 (18.1 bits), Expect = 1.6e-51, Sum P(5) = 1.6e-51
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 360 QRDMASGICQLLEKKEGLFRQKLMGKRV 387
+R M G + ++ L + +MG RV
Sbjct: 444 ERHMCDGDIIVFNRQPTLHKMSMMGHRV 471
>WB|WBGene00000123 [details] [associations]
symbol:ama-1 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;IMP] [GO:0009792 "embryo development ending in birth
or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0010458 "exit from mitosis" evidence=IMP]
[GO:0008356 "asymmetric cell division" evidence=IMP] [GO:0032502
"developmental process" evidence=IMP] [GO:0006479 "protein
methylation" evidence=IMP] [GO:0007369 "gastrulation" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0001055 "RNA polymerase II
activity" evidence=IMP] [GO:0042789 "mRNA transcription from RNA
polymerase II promoter" evidence=IMP] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 GO:GO:0005634
GO:GO:0009792 GO:GO:0040010 GO:GO:0007052 GO:GO:0010458
GO:GO:0046872 GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006479 GO:GO:0008356 GO:GO:0007369
GO:GO:0042789 EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665
EMBL:M29235 PIR:A34092 PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356
STRING:P16356 PaxDb:P16356 EnsemblMetazoa:F36A4.7.1
EnsemblMetazoa:F36A4.7.2 GeneID:177190 KEGG:cel:CELE_F36A4.7
UCSC:F36A4.7 CTD:247749 WormBase:F36A4.7
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975 InParanoid:P16356
OMA:KVLPWST NextBio:895720 GO:GO:0001055 Uniprot:P16356
Length = 1856
Score = 347 (127.2 bits), Expect = 5.7e-92, Sum P(7) = 5.7e-92
Identities = 64/129 (49%), Positives = 92/129 (71%)
Query: 912 MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
M SG+KGSK+N Q+ + +GQQ +EGKR+P +TLP F D+ P + GF+ + +L
Sbjct: 763 MVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYL 822
Query: 972 TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
GL P E++FH M GREGL+DTAVKT+ +GY+QR LIK +E + ++YD +VR++ +VQ
Sbjct: 823 AGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQ 882
Query: 1032 FCYGEDGVD 1040
YGEDG+D
Sbjct: 883 LRYGEDGLD 891
Score = 273 (101.2 bits), Expect = 5.7e-92, Sum P(7) = 5.7e-92
Identities = 51/115 (44%), Positives = 74/115 (64%)
Query: 490 GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
G V RH++DGD+++ NRQPTLHK S+M H V++L T RM+ + S YNADFDGDEM
Sbjct: 437 GYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWS-TFRMNLSVTSPYNADFDGDEM 495
Query: 550 NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLN 604
N+H PQ +RAE I Q + P P+ ++QD + + ++TK+D F++
Sbjct: 496 NLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 550
Score = 217 (81.4 bits), Expect = 5.7e-92, Sum P(7) = 5.7e-92
Identities = 42/70 (60%), Positives = 56/70 (80%)
Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
++ +F ++AQPGE VG LA+QS+GEP+TQMTLNTFH AG NVTLG+PRL+EI+ +
Sbjct: 1066 IESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINV- 1124
Query: 1191 SKDIKTPVIT 1200
SK +KTP +T
Sbjct: 1125 SKTLKTPSLT 1134
Score = 194 (73.4 bits), Expect = 5.7e-92, Sum P(7) = 5.7e-92
Identities = 62/172 (36%), Positives = 90/172 (52%)
Query: 286 VVLVPPIKFRLPS--KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMN 343
V+ VPP+ R P+ G + + T LS +++ N L N A V+
Sbjct: 246 VLPVPPLAVR-PAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAA-AHVLTDDVRL 303
Query: 344 LQQSVNVLFD----GKNAA---GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
LQ V L D G A G R + S I Q L+ KEG R LMGKRV+++ R+VI+
Sbjct: 304 LQFHVATLVDNCIPGLPTATQKGGRPLKS-IKQRLKGKEGRIRGNLMGKRVDFSARTVIT 362
Query: 397 PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL 448
DP L ++ +G+P A LT+PE VTP+NV KL++ + G +PGA + +
Sbjct: 363 ADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYII 414
Score = 108 (43.1 bits), Expect = 5.7e-92, Sum P(7) = 5.7e-92
Identities = 29/99 (29%), Positives = 45/99 (45%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHF---KASRREVEKC 57
C TC CPGHFGH++L PV++ + +CF+C K++ R +E
Sbjct: 66 CMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEIL 125
Query: 58 VR-----KLELIIKGDIIAAKSL-DLDLPSESSNPEDSD 90
+ K L + D+ AKS+ + E P+D D
Sbjct: 126 KKTGTNSKKRLTMIYDLCKAKSVCEGAAEKEEGMPDDPD 164
Score = 78 (32.5 bits), Expect = 5.7e-92, Sum P(7) = 5.7e-92
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 647 PAIWKPEPLWTGKQVITAVL 666
PAI KP+PLWTGKQV + ++
Sbjct: 571 PAILKPKPLWTGKQVFSLII 590
Score = 48 (22.0 bits), Expect = 5.7e-92, Sum P(7) = 5.7e-92
Identities = 16/64 (25%), Positives = 26/64 (40%)
Query: 754 IYKNDLVRGVI-DKAQFADYG-LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
I +L+ G++ K G L+H V G A S + + +L G T G+
Sbjct: 624 IEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGI 683
Query: 812 DDLL 815
D +
Sbjct: 684 GDTI 687
Score = 39 (18.8 bits), Expect = 1.6e-73, Sum P(7) = 1.6e-73
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 1138 SLAQPGEPVGLLASQS 1153
S A PG+P+G L+ ++
Sbjct: 1553 SPASPGDPLGALSPRT 1568
Score = 37 (18.1 bits), Expect = 3.7e-17, Sum P(3) = 3.7e-17
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 123 AEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWI 158
A+ LL + + +T C +++ F W+
Sbjct: 1027 AQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWL 1062
>UNIPROTKB|P16356 [details] [associations]
symbol:ama-1 "DNA-directed RNA polymerase II subunit RPB1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0007052 GO:GO:0010458 GO:GO:0046872
GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0006479 GO:GO:0008356 GO:GO:0007369 GO:GO:0042789
EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665 EMBL:M29235 PIR:A34092
PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356 STRING:P16356
PaxDb:P16356 EnsemblMetazoa:F36A4.7.1 EnsemblMetazoa:F36A4.7.2
GeneID:177190 KEGG:cel:CELE_F36A4.7 UCSC:F36A4.7 CTD:247749
WormBase:F36A4.7 GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975
InParanoid:P16356 OMA:KVLPWST NextBio:895720 GO:GO:0001055
Uniprot:P16356
Length = 1856
Score = 347 (127.2 bits), Expect = 5.7e-92, Sum P(7) = 5.7e-92
Identities = 64/129 (49%), Positives = 92/129 (71%)
Query: 912 MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
M SG+KGSK+N Q+ + +GQQ +EGKR+P +TLP F D+ P + GF+ + +L
Sbjct: 763 MVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYL 822
Query: 972 TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
GL P E++FH M GREGL+DTAVKT+ +GY+QR LIK +E + ++YD +VR++ +VQ
Sbjct: 823 AGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQ 882
Query: 1032 FCYGEDGVD 1040
YGEDG+D
Sbjct: 883 LRYGEDGLD 891
Score = 273 (101.2 bits), Expect = 5.7e-92, Sum P(7) = 5.7e-92
Identities = 51/115 (44%), Positives = 74/115 (64%)
Query: 490 GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
G V RH++DGD+++ NRQPTLHK S+M H V++L T RM+ + S YNADFDGDEM
Sbjct: 437 GYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWS-TFRMNLSVTSPYNADFDGDEM 495
Query: 550 NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLN 604
N+H PQ +RAE I Q + P P+ ++QD + + ++TK+D F++
Sbjct: 496 NLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFID 550
Score = 217 (81.4 bits), Expect = 5.7e-92, Sum P(7) = 5.7e-92
Identities = 42/70 (60%), Positives = 56/70 (80%)
Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
++ +F ++AQPGE VG LA+QS+GEP+TQMTLNTFH AG NVTLG+PRL+EI+ +
Sbjct: 1066 IESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINV- 1124
Query: 1191 SKDIKTPVIT 1200
SK +KTP +T
Sbjct: 1125 SKTLKTPSLT 1134
Score = 194 (73.4 bits), Expect = 5.7e-92, Sum P(7) = 5.7e-92
Identities = 62/172 (36%), Positives = 90/172 (52%)
Query: 286 VVLVPPIKFRLPS--KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMN 343
V+ VPP+ R P+ G + + T LS +++ N L N A V+
Sbjct: 246 VLPVPPLAVR-PAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAA-AHVLTDDVRL 303
Query: 344 LQQSVNVLFD----GKNAA---GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
LQ V L D G A G R + S I Q L+ KEG R LMGKRV+++ R+VI+
Sbjct: 304 LQFHVATLVDNCIPGLPTATQKGGRPLKS-IKQRLKGKEGRIRGNLMGKRVDFSARTVIT 362
Query: 397 PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL 448
DP L ++ +G+P A LT+PE VTP+NV KL++ + G +PGA + +
Sbjct: 363 ADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYII 414
Score = 108 (43.1 bits), Expect = 5.7e-92, Sum P(7) = 5.7e-92
Identities = 29/99 (29%), Positives = 45/99 (45%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHF---KASRREVEKC 57
C TC CPGHFGH++L PV++ + +CF+C K++ R +E
Sbjct: 66 CMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEIL 125
Query: 58 VR-----KLELIIKGDIIAAKSL-DLDLPSESSNPEDSD 90
+ K L + D+ AKS+ + E P+D D
Sbjct: 126 KKTGTNSKKRLTMIYDLCKAKSVCEGAAEKEEGMPDDPD 164
Score = 78 (32.5 bits), Expect = 5.7e-92, Sum P(7) = 5.7e-92
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 647 PAIWKPEPLWTGKQVITAVL 666
PAI KP+PLWTGKQV + ++
Sbjct: 571 PAILKPKPLWTGKQVFSLII 590
Score = 48 (22.0 bits), Expect = 5.7e-92, Sum P(7) = 5.7e-92
Identities = 16/64 (25%), Positives = 26/64 (40%)
Query: 754 IYKNDLVRGVI-DKAQFADYG-LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
I +L+ G++ K G L+H V G A S + + +L G T G+
Sbjct: 624 IEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGI 683
Query: 812 DDLL 815
D +
Sbjct: 684 GDTI 687
Score = 39 (18.8 bits), Expect = 1.6e-73, Sum P(7) = 1.6e-73
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 1138 SLAQPGEPVGLLASQS 1153
S A PG+P+G L+ ++
Sbjct: 1553 SPASPGDPLGALSPRT 1568
Score = 37 (18.1 bits), Expect = 3.7e-17, Sum P(3) = 3.7e-17
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 123 AEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWI 158
A+ LL + + +T C +++ F W+
Sbjct: 1027 AQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWL 1062
>UNIPROTKB|H9L2Z2 [details] [associations]
symbol:H9L2Z2 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008811 "chloramphenicol O-acetyltransferase activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR001707 InterPro:IPR007066
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF04983 Pfam:PF04998 Pfam:PF05000 ProDom:PD002660
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
GO:GO:0008811 EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
Ensembl:ENSGALT00000036065 Uniprot:H9L2Z2
Length = 527
Score = 672 (241.6 bits), Expect = 8.7e-86, Sum P(3) = 8.7e-86
Identities = 163/408 (39%), Positives = 228/408 (55%)
Query: 754 IYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
I +L+ GV+DKA F YGLVH E+YG T+G +L L RLFT +LQ++ C
Sbjct: 134 IRSGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLPCLGRLFTAYLQLYHVACYG 193
Query: 812 DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAA 871
++L E L + H + E ++ + + K R D
Sbjct: 194 ENLAYFPKGFIENITRLQLIHNLMYHTHTQETETSSCEDVQGKWQDAHLCKDQR---DFN 250
Query: 872 VAYFDMKMTSQLNKHTSSSVINEL-LSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
+ D+K ++N + + +N++ + GL + +N + LM SGAKGS VN QIS
Sbjct: 251 MV--DLKFKEEVNNYNNE--VNKVCMPFGLHRSFPENNLQLMVQSGAKGSTVNTVQISCL 306
Query: 931 LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
LGQ ELEG+R P M SGK+LP F P+D++P +GGF+ RFLTG++P E++FHCMAGREGL
Sbjct: 307 LGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGL 366
Query: 991 VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKF 1050
VDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF YGEDG+D+ ++S S
Sbjct: 367 VDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKSSGTSVC 426
Query: 1051 DALAAXXXXXXXXXNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNA 1110
K+ K + + K G L S + +L L +
Sbjct: 427 HCYTVLYFNVTLL--KYRKKAPLLCQLWTGESASSK---G-LSTSRGFTSKLKAFLNNLF 480
Query: 1111 EKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPS 1158
+K K S ++ + L+ K+ SL PGE VGLLA+QS+GEPS
Sbjct: 481 QKHL-KVESKIISTNELKDLLYLKWQRSLCDPGEAVGLLAAQSIGEPS 527
Score = 157 (60.3 bits), Expect = 8.7e-86, Sum P(3) = 8.7e-86
Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 549 MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
MN HFPQ+E+ RAEAY + + QY+ P +G PL LIQDH++S +T + F R+++
Sbjct: 1 MNAHFPQNELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQY 60
Query: 609 CQ 610
+
Sbjct: 61 ME 62
Score = 85 (35.0 bits), Expect = 8.7e-86, Sum P(3) = 8.7e-86
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 647 PAIWKPEPLWTGKQVI-TAVLNHITRGRPPFVVERGGKLPQDFF 689
PAI KP+ LWTGKQV+ T ++N I P + KL FF
Sbjct: 80 PAIMKPQRLWTGKQVVSTLLINIIPENHVPLNLTGKAKLVVVFF 123
>UNIPROTKB|H9L2Z3 [details] [associations]
symbol:H9L2Z3 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008811 "chloramphenicol O-acetyltransferase activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR001707 InterPro:IPR007066
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
InterPro:IPR018372 Pfam:PF00302 Pfam:PF04983 Pfam:PF04998
Pfam:PF05000 ProDom:PD002660 PROSITE:PS00100 SMART:SM01059
GO:GO:0005634 Gene3D:3.30.559.10 InterPro:IPR023213 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0003899 PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 GO:GO:0008811 EMBL:AADN02030152
EMBL:AADN02030153 EMBL:AADN02030154 Ensembl:ENSGALT00000036066
OMA:INKRELH Uniprot:H9L2Z3
Length = 533
Score = 678 (243.7 bits), Expect = 9.8e-86, Sum P(3) = 9.8e-86
Identities = 166/420 (39%), Positives = 242/420 (57%)
Query: 754 IYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
I +L+ GV+DKA F YGLVH E+YG T+G +L L RLFT +LQ++ F V
Sbjct: 134 IRSGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLPCLGRLFTAYLQLYRFDLNV 193
Query: 812 DDL-LILKDKERERKNHLHGSE---EIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGG 867
++ K + G + + +VH DG + ++ +E+++
Sbjct: 194 ANMDNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVC---DGFHVG--RMLNELQQYCDEW 248
Query: 868 GDAAVAYFDMKMTSQLNKHTSSSVINEL-LSEGLLKPTGKNWISLMTTSGAKGSKVNFQQ 926
AV D+K ++N + + +N++ + GL + +N + LM SGAKGS VN Q
Sbjct: 249 QGGAV---DLKFKEEVNNYNNE--VNKVCMPFGLHRSFPENNLQLMVQSGAKGSTVNTVQ 303
Query: 927 ISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAG 986
IS LGQ ELEG+R P M SGK+LP F P+D++P +GGF+ RFLTG++P E++FHCMAG
Sbjct: 304 ISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAG 363
Query: 987 REGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
REGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF YGEDG+D+ +T F
Sbjct: 364 REGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQF 423
Query: 1047 ISKFDALAAXXXXXXXXXNKFCDKGSHT--FVMGRNQEMIYKKCSGQLDASNAYIMELPD 1104
+ NK+ + + + ++ +++ I SN+Y + +
Sbjct: 424 LQPEQFPFIADNYEVEHLNKYRSESASSKGLIVTMDRQSI----------SNSYFASVSE 473
Query: 1105 ALKDNAEKFADK--FLSNE---MAKQDFLK-LVKHKFVLSLAQPGEPVGLLASQSVGEPS 1158
+ E + +K S E ++ LK L+ K+ SL PGE VGLLA+QS+GEPS
Sbjct: 474 TFESGVEDYINKRELHSGEAFGLSVPSKLKDLLYLKWQRSLCDPGEAVGLLAAQSIGEPS 533
Score = 157 (60.3 bits), Expect = 9.8e-86, Sum P(3) = 9.8e-86
Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 549 MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
MN HFPQ+E+ RAEAY + + QY+ P +G PL LIQDH++S +T + F R+++
Sbjct: 1 MNAHFPQNELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQY 60
Query: 609 CQ 610
+
Sbjct: 61 ME 62
Score = 78 (32.5 bits), Expect = 9.8e-86, Sum P(3) = 9.8e-86
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 647 PAIWKPEPLWTGKQVI-TAVLNHITRGRPP 675
PAI KP+ LWTGKQV+ T ++N I P
Sbjct: 80 PAIMKPQRLWTGKQVVSTLLINIIPENHVP 109
>UNIPROTKB|H9L2Z1 [details] [associations]
symbol:H9L2Z1 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007066 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF04983 Pfam:PF04998 Pfam:PF05000
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
Ensembl:ENSGALT00000036064 Uniprot:H9L2Z1
Length = 522
Score = 677 (243.4 bits), Expect = 1.3e-85, Sum P(3) = 1.3e-85
Identities = 166/411 (40%), Positives = 236/411 (57%)
Query: 754 IYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
I +L+ GV+DKA F YGLVH E+YG T+G +L L RLFT +LQ++ F G
Sbjct: 131 IRSGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLPCLGRLFTAYLQLYRFKRGQ 190
Query: 812 DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAA 871
L+ R HG +R +A + + + ++ K + + D
Sbjct: 191 YGQLL-------RPRFHHGQILYARRQGADAAGDSETSSCEDVQGKWQDAHLCKDQRDFN 243
Query: 872 VAYFDMKMTSQLNKHTSSSVINEL-LSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
+ D+K ++N + + +N++ + GL + +N + LM SGAKGS VN QIS
Sbjct: 244 MV--DLKFKEEVNNYNNE--VNKVCMPFGLHRSFPENNLQLMVQSGAKGSTVNTVQISCL 299
Query: 931 LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
LGQ ELEG+R P M SGK+LP F P+D++P +GGF+ RFLTG++P E++FHCMAGREGL
Sbjct: 300 LGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGL 359
Query: 991 VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKF 1050
VDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF YGEDG+D+ +T F+
Sbjct: 360 VDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPE 419
Query: 1051 DALAAXXXXXXXXXNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNA 1110
NK S ++ N+ + ++ A N + + + A+K+
Sbjct: 420 QFPFIADNYEVEHLNKHLKVESK--IISTNENVRAEEV-----ACNQHFLPIV-AVKNEY 471
Query: 1111 EKFADKFLSN--EMAKQDFLK-LVKHKFVLSLAQPGEPVGLLASQSVGEPS 1158
+S E+ K LK L+ K+ SL PGE VGLLA+QS+GEPS
Sbjct: 472 MLLPHPRVSETVEIRKSFRLKDLLYLKWQRSLCDPGEAVGLLAAQSIGEPS 522
Score = 157 (60.3 bits), Expect = 1.3e-85, Sum P(3) = 1.3e-85
Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 549 MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
MN HFPQ+E+ RAEAY + + QY+ P +G PL LIQDH++S +T + F R+++
Sbjct: 1 MNAHFPQNELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQY 60
Query: 609 CQ 610
+
Sbjct: 61 ME 62
Score = 78 (32.5 bits), Expect = 1.3e-85, Sum P(3) = 1.3e-85
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 647 PAIWKPEPLWTGKQVI-TAVLNHITRGRPP 675
PAI KP+ LWTGKQV+ T ++N I P
Sbjct: 80 PAIMKPQRLWTGKQVVSTLLINIIPENHVP 109
Score = 37 (18.1 bits), Expect = 6.0e-67, Sum P(2) = 6.0e-67
Identities = 18/69 (26%), Positives = 28/69 (40%)
Query: 137 TTKCGNCKAKNPRISKPTFGW--------IHMNGMPHADIRANLIRGCNLGETFSGGEEE 188
T K G K P I KP W + +N +P + NL +G + G+ E
Sbjct: 69 TDKKGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPENHVPLNLTGKAKIGGK-AWGKNE 127
Query: 189 KDLGASSDV 197
K + S ++
Sbjct: 128 KVIIRSGEL 136
>FB|FBgn0003277 [details] [associations]
symbol:RpII215 "RNA polymerase II 215kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0005703 "polytene
chromosome puff" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS;NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI] [GO:0005700
"polytene chromosome" evidence=IDA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
PROSITE:PS00115 SMART:SM00663 GO:GO:0007095 GO:GO:0046872
GO:GO:0003677 EMBL:AE014298 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0005703 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 GeneTree:ENSGT00700000104490 OMA:KVLPWST KO:K03006
EMBL:M27431 EMBL:M14203 EMBL:M11798 EMBL:M19537 PIR:S04457
RefSeq:NP_511124.1 UniGene:Dm.2925 ProteinModelPortal:P04052
SMR:P04052 DIP:DIP-22282N IntAct:P04052 MINT:MINT-970158
STRING:P04052 PaxDb:P04052 EnsemblMetazoa:FBtr0073542 GeneID:32100
KEGG:dme:Dmel_CG1554 CTD:32100 FlyBase:FBgn0003277
InParanoid:P04052 OrthoDB:EOG4QRFJV PhylomeDB:P04052
GenomeRNAi:32100 NextBio:776837 Bgee:P04052 GermOnline:CG1554
Uniprot:P04052
Length = 1887
Score = 354 (129.7 bits), Expect = 1.5e-85, Sum P(6) = 1.5e-85
Identities = 76/203 (37%), Positives = 119/203 (58%)
Query: 852 DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN-------KHTSSSVINELLSEGLLKPT 904
DP + +EI++A++ D + +L + T + +N +L++ K
Sbjct: 687 DP-QTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTG 745
Query: 905 GK--------NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPW 956
G N + M SG+KGS +N Q+ + +GQQ +EGKR+P +TLP F
Sbjct: 746 GSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIKD 805
Query: 957 DWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKI 1016
D+ P + GF+ + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR LIK +E + +
Sbjct: 806 DYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 865
Query: 1017 SYDYSVRDADGSIVQFCYGEDGV 1039
+YD +VR++ G ++Q YGEDG+
Sbjct: 866 NYDGTVRNSVGQLIQLRYGEDGL 888
Score = 282 (104.3 bits), Expect = 1.5e-85, Sum P(6) = 1.5e-85
Identities = 58/127 (45%), Positives = 79/127 (62%)
Query: 482 KDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTY 540
K SD + G V RHL+D D+V+ NRQPTLHK S+M H V+VL T RM+ + S Y
Sbjct: 426 KSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWS-TFRMNLSCTSPY 484
Query: 541 NADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKD 600
NADFDGDEMN+H PQ +RAE NI Q + P P+ ++QD + + +TK+D
Sbjct: 485 NADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRD 544
Query: 601 TFLNRDE 607
F+ R++
Sbjct: 545 VFITREQ 551
Score = 209 (78.6 bits), Expect = 1.5e-85, Sum P(6) = 1.5e-85
Identities = 107/437 (24%), Positives = 190/437 (43%)
Query: 58 VRKLELIIKGDIIAAKSLDLDLPSESS--NPEDSDVSNKSSC-----SMVTPRGNYDNVR 110
+R++ + +G + A++++ P +P + S C +M G++ ++
Sbjct: 27 IRRMS-VTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPGHFGHID 85
Query: 111 NLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRA 170
KP + F + +L+ + +K NP+I + + G P + A
Sbjct: 86 LAKPV--FHIGFITKTIKILRCVCFYCSKM-LVSPHNPKIKEIV---MKSRGQPRKRL-A 138
Query: 171 NLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGA-VPS 229
+ C G+T G E+ DL + P +G G + RR +G + +
Sbjct: 139 YVYDLCK-GKTICEGGEDMDLTKENQQPDPNKKPGHGGC-GHYQPSIRR----TGLDLTA 192
Query: 230 GFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQ--QGFGKKAGHSIFFLGVV 287
+K Q + S K I+ E +E+ I+D + G K + + V
Sbjct: 193 EWKHQNE-------DSQEKKIVVSA-ERVWEILKHITDEECFILGMDPKYARPDWMIVTV 244
Query: 288 L-VPPIKFRLPS--KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNL 344
L VPP+ R P+ G + + T LS +++AN L + A VI L
Sbjct: 245 LPVPPLAVR-PAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAA-AHVIQENIKML 302
Query: 345 QQSVNVLFDGKNAAGQRDMA-SG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
Q V L D R M SG I L+ KEG R LMGKRV+++ R+VI+PD
Sbjct: 303 QFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD 362
Query: 399 PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTM 454
P L ++++G+P A LT+PE VTP+N+ ++++ + G +PGA + + +++
Sbjct: 363 PNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLR 422
Query: 455 RLPPNKKMRISIGRKLD 471
P + + + G K++
Sbjct: 423 FHPKSSDLHLQCGYKVE 439
Score = 202 (76.2 bits), Expect = 1.5e-85, Sum P(6) = 1.5e-85
Identities = 48/96 (50%), Positives = 64/96 (66%)
Query: 1116 KFLSNE--MAKQDFLKLV---KHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
K++S E ++ + F LV + +F + A PGE VG LA+QS+GEP+TQMTLNTFH AG
Sbjct: 1044 KYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAG 1103
Query: 1171 RGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVG 1206
NVTLG+PRL+EI+ I+ K K P +T L G
Sbjct: 1104 VSSKNVTLGVPRLKEIINISKKP-KAPSLTVFLTGG 1138
Score = 130 (50.8 bits), Expect = 2.3e-77, Sum P(6) = 2.3e-77
Identities = 33/115 (28%), Positives = 48/115 (41%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFC-------HHFKA---- 49
C+TC CPGHFGHIDL PV++ + +CF+C H+ K
Sbjct: 67 CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126
Query: 50 --SRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTP 102
SR + K + + + KG I D+DL E+ P+ + C P
Sbjct: 127 MKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQP 181
Score = 72 (30.4 bits), Expect = 1.5e-85, Sum P(6) = 1.5e-85
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 647 PAIWKPEPLWTGKQVITAVL 666
P I KP PLWTGKQ+ + ++
Sbjct: 569 PCILKPRPLWTGKQIFSLII 588
Score = 43 (20.2 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 852 DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL 895
D IK +E+ K G A V ++KM L H ++ V N++
Sbjct: 274 DIIKANNELRKNEASGAAAHVIQENIKM---LQFHVATLVDNDM 314
Score = 41 (19.5 bits), Expect = 2.3e-26, Sum P(3) = 2.3e-26
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 555 QDEVSRA--EAYNIVN-ANNQYVRPSNGDPLRSLIQDHI 590
Q + +A + N++ A+N + P+ G+ LR ++ +
Sbjct: 695 QQAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKV 733
Score = 40 (19.1 bits), Expect = 1.5e-85, Sum P(6) = 1.5e-85
Identities = 12/60 (20%), Positives = 24/60 (40%)
Query: 758 DLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
+L+ G++ K L+H G + AG + + +L G + G+ D +
Sbjct: 626 ELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLFEGHSIGIGDTI 685
Score = 37 (18.1 bits), Expect = 6.0e-26, Sum P(3) = 6.0e-26
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 521 VRVLKGEKTL 530
+RV+KG KTL
Sbjct: 999 IRVIKGVKTL 1008
>UNIPROTKB|H9L2Z0 [details] [associations]
symbol:H9L2Z0 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007066 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF04983 Pfam:PF04998 Pfam:PF05000
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
Ensembl:ENSGALT00000036063 Uniprot:H9L2Z0
Length = 517
Score = 675 (242.7 bits), Expect = 2.2e-85, Sum P(3) = 2.2e-85
Identities = 167/410 (40%), Positives = 231/410 (56%)
Query: 754 IYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
I +L+ GV+DKA F YGLVH E+YG T+G +L L RLFT +LQ++ + GV
Sbjct: 131 IRSGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLPCLGRLFTAYLQLYQYMSGV 190
Query: 812 DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAA 871
L L E + G + HL + D +D +K K E+ A
Sbjct: 191 --LAALNLPETSSCEDVQGKWQ---DAHL-CKDQRDFNMVD-LKFKEEVNNYNNEVNKAC 243
Query: 872 VAYFDMKMTSQLNKHTSSSVINELLSE--GLLKPTGKNWISLMTTSGAKGSKVNFQQISS 929
+ +++ +N + N L+ GL + +N + LM SGAKGS VN QIS
Sbjct: 244 LQLVFALLSTGINC-AQYFLNNSLVCMPFGLHRSFPENNLQLMVQSGAKGSTVNTVQISC 302
Query: 930 HLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREG 989
LGQ ELEG+R P M SGK+LP F P+D++P +GGF+ RFLTG++P E++FHCMAGREG
Sbjct: 303 LLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREG 362
Query: 990 LVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISK 1049
LVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF YGEDG+D+ +T F+
Sbjct: 363 LVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQP 422
Query: 1050 FDALAAXXXXXXXXXNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDN 1109
+F + ++ E+ KK L ++Y + + +
Sbjct: 423 ---------------EQFPFIADNYELLKMWYELDEKKRRKYLKRPDSYFASVSETFESG 467
Query: 1110 AEKFADKFLSNEMAKQDFLK-LVKHKFVLSLAQPGEPVGLLASQSVGEPS 1158
E + +K E+ LK L+ K+ SL PGE VGLLA+QS+GEPS
Sbjct: 468 VEDYINKREFTELKPLLILKDLLYLKWQRSLCDPGEAVGLLAAQSIGEPS 517
Score = 157 (60.3 bits), Expect = 2.2e-85, Sum P(3) = 2.2e-85
Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 549 MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
MN HFPQ+E+ RAEAY + + QY+ P +G PL LIQDH++S +T + F R+++
Sbjct: 1 MNAHFPQNELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQY 60
Query: 609 CQ 610
+
Sbjct: 61 ME 62
Score = 78 (32.5 bits), Expect = 2.2e-85, Sum P(3) = 2.2e-85
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 647 PAIWKPEPLWTGKQVI-TAVLNHITRGRPP 675
PAI KP+ LWTGKQV+ T ++N I P
Sbjct: 80 PAIMKPQRLWTGKQVVSTLLINIIPENHVP 109
Score = 37 (18.1 bits), Expect = 1.0e-66, Sum P(2) = 1.0e-66
Identities = 18/69 (26%), Positives = 28/69 (40%)
Query: 137 TTKCGNCKAKNPRISKPTFGW--------IHMNGMPHADIRANLIRGCNLGETFSGGEEE 188
T K G K P I KP W + +N +P + NL +G + G+ E
Sbjct: 69 TDKKGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPENHVPLNLTGKAKIGGK-AWGKNE 127
Query: 189 KDLGASSDV 197
K + S ++
Sbjct: 128 KVIIRSGEL 136
>UNIPROTKB|A4IF62 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9913 "Bos taurus" [GO:0045087 "innate immune
response" evidence=ISS] [GO:0032728 "positive regulation of
interferon-beta production" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0032728 KO:K03018 eggNOG:COG0086 GO:GO:0032549
GeneTree:ENSGT00700000104490 HOVERGEN:HBG004339 EMBL:BC134422
IPI:IPI00701819 RefSeq:NP_001077219.1 UniGene:Bt.58772
ProteinModelPortal:A4IF62 STRING:A4IF62 PRIDE:A4IF62
Ensembl:ENSBTAT00000017638 GeneID:540308 KEGG:bta:540308 CTD:11128
HOGENOM:HOG000222974 InParanoid:A4IF62 OMA:PRRPLIF
OrthoDB:EOG4QVCB4 NextBio:20878554 ArrayExpress:A4IF62
PANTHER:PTHR19376:SF15 Uniprot:A4IF62
Length = 1390
Score = 337 (123.7 bits), Expect = 2.1e-83, Sum P(6) = 2.1e-83
Identities = 70/152 (46%), Positives = 95/152 (62%)
Query: 890 SVINELLSEGLLKPTGKNWISL-MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGK 948
SVI + L+ K+ L M G+KGS +N Q+ + +GQQ + G RVP +
Sbjct: 757 SVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENR 816
Query: 949 TLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1008
+LP F P A GF+ + F +GL P E++FH MAGREGLVDTAVKT+ +GY+QR L+
Sbjct: 817 SLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLV 876
Query: 1009 KNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
K+LE L YD +VR + G I+QF YG DG+D
Sbjct: 877 KSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD 908
Score = 337 (123.7 bits), Expect = 2.1e-83, Sum P(6) = 2.1e-83
Identities = 113/342 (33%), Positives = 168/342 (49%)
Query: 276 KAGH-SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQP 331
+AG S L +LVPP+ R PS D E T+ L++++ N + ++
Sbjct: 243 EAGKPSDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA 301
Query: 332 DNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYAC 391
++I+ W LQ + + + + +MA +K F Q+L GK+ +
Sbjct: 302 -KTQMIMEDWDFLQLQCALYINSELSGIPLNMAP------KKWTRGFVQRLKGKQGRF-- 352
Query: 392 RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
R +S I P LR+ E P +V K+ + +++ ++L KL
Sbjct: 353 RGNLSGKRVDFSGRTVISPDPNLRID--EVAVPVHVAKI---LTFPEKVNKANINFLRKL 407
Query: 452 STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE---GKMVYRHLQDGDVVLVNRQ 508
+R P + ++ T ++ G E G +V RHL DGDVVL NRQ
Sbjct: 408 --VRNGPEVHPGANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQ 465
Query: 509 PTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVN 568
P+LHK SIMAH+ RV K +T R + C+ YNADFDGDEMN+H PQ E ++AEA ++
Sbjct: 466 PSLHKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMG 524
Query: 569 ANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
V P NG+PL + IQD + A LLT KDTF +R + CQ
Sbjct: 525 TKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQ 566
Score = 216 (81.1 bits), Expect = 2.1e-83, Sum P(6) = 2.1e-83
Identities = 43/89 (48%), Positives = 60/89 (67%)
Query: 1115 DKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEM 1174
D+ ++ K FL+ + K++ + +PG VG L +QS+GEP TQMTL TFH AG M
Sbjct: 1004 DRITPTQIEK--FLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061
Query: 1175 NVTLGIPRLQEILTIASKDIKTPVITCPL 1203
N+TLG+PR++EI+ ASK I TP+IT L
Sbjct: 1062 NITLGVPRIKEIIN-ASKAISTPIITAQL 1089
Score = 96 (38.9 bits), Expect = 2.1e-83, Sum P(6) = 2.1e-83
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRRE 53
C+TCG+ C GH+G+IDL +P ++ + IC C H S+ E
Sbjct: 69 CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121
Score = 74 (31.1 bits), Expect = 2.1e-83, Sum P(6) = 2.1e-83
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 754 IYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
I ++L+ G +DK + + + +G N A +S L+RL V+L GF+ G
Sbjct: 640 IQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIG 699
Query: 811 VDDL 814
+ D+
Sbjct: 700 IGDV 703
Score = 69 (29.3 bits), Expect = 2.1e-83, Sum P(6) = 2.1e-83
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 633 VLISRSEQEVLPLLP-AIWKPEPLWTGKQVITAVL 666
+L+ + E+ + L P I KP LWTGKQ+ + +L
Sbjct: 571 ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVIL 605
Score = 42 (19.8 bits), Expect = 1.9e-47, Sum P(5) = 1.9e-47
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 557 EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
E R +A+ V + N Y + +N PL + DH
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDH 58
Score = 40 (19.1 bits), Expect = 5.4e-35, Sum P(5) = 5.4e-35
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 905 GKNWISLMTTSGAKGSKV---NFQQISSHLG 932
G N ++M T G KG++ N ++ LG
Sbjct: 1229 GDNLRAVMATHGVKGTRTTSNNTYEVEKTLG 1259
Score = 39 (18.8 bits), Expect = 1.7e-77, Sum P(6) = 1.7e-77
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 44 CHHFKASRREVEKC 57
CHH A V+KC
Sbjct: 156 CHHCGAFNGTVKKC 169
>UNIPROTKB|F1S2E6 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0045087 "innate immune response" evidence=IEA]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:CU407090 RefSeq:XP_001929395.1 Ensembl:ENSSSCT00000011305
GeneID:100156229 KEGG:ssc:100156229 Uniprot:F1S2E6
Length = 1390
Score = 337 (123.7 bits), Expect = 3.4e-83, Sum P(6) = 3.4e-83
Identities = 70/152 (46%), Positives = 95/152 (62%)
Query: 890 SVINELLSEGLLKPTGKNWISL-MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGK 948
SVI + L+ K+ L M G+KGS +N Q+ + +GQQ + G RVP +
Sbjct: 757 SVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENR 816
Query: 949 TLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1008
+LP F P A GF+ + F +GL P E++FH MAGREGLVDTAVKT+ +GY+QR L+
Sbjct: 817 SLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLV 876
Query: 1009 KNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
K+LE L YD +VR + G I+QF YG DG+D
Sbjct: 877 KSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD 908
Score = 334 (122.6 bits), Expect = 3.4e-83, Sum P(6) = 3.4e-83
Identities = 113/342 (33%), Positives = 167/342 (48%)
Query: 276 KAGH-SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQP 331
+AG S L +LVPP+ R PS D E T+ L++++ N + ++
Sbjct: 243 EAGKPSDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA 301
Query: 332 DNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYAC 391
++I+ W LQ + + + + +MA +K F Q+L GK+ +
Sbjct: 302 -KTQMIMEDWDFLQLQCALYINSELSGIPLNMAP------KKWTRGFVQRLKGKQGRF-- 352
Query: 392 RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
R +S I P LR+ E P +V K+ + +++ +L KL
Sbjct: 353 RGNLSGKRVDFSGRTVISPDPNLRID--EVAVPVHVAKI---LTFPEKVNKANITFLRKL 407
Query: 452 STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE---GKMVYRHLQDGDVVLVNRQ 508
+R P + ++ T ++ G E G +V RHL DGDVVL NRQ
Sbjct: 408 --VRNGPEVHPGANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQ 465
Query: 509 PTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVN 568
P+LHK SIMAH+ RV K +T R + C+ YNADFDGDEMN+H PQ E ++AEA ++
Sbjct: 466 PSLHKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMG 524
Query: 569 ANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
V P NG+PL + IQD + A LLT KDTF +R + CQ
Sbjct: 525 TKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQ 566
Score = 216 (81.1 bits), Expect = 3.4e-83, Sum P(6) = 3.4e-83
Identities = 43/89 (48%), Positives = 60/89 (67%)
Query: 1115 DKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEM 1174
D+ ++ K FL+ + K++ + +PG VG L +QS+GEP TQMTL TFH AG M
Sbjct: 1004 DRITPTQIEK--FLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061
Query: 1175 NVTLGIPRLQEILTIASKDIKTPVITCPL 1203
N+TLG+PR++EI+ ASK I TP+IT L
Sbjct: 1062 NITLGVPRIKEIIN-ASKAISTPIITAQL 1089
Score = 96 (38.9 bits), Expect = 3.4e-83, Sum P(6) = 3.4e-83
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRRE 53
C+TCG+ C GH+G+IDL +P ++ + IC C H S+ E
Sbjct: 69 CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121
Score = 74 (31.1 bits), Expect = 3.4e-83, Sum P(6) = 3.4e-83
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 754 IYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
I ++L+ G +DK + + + +G N A +S L+RL V+L GF+ G
Sbjct: 640 IQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIG 699
Query: 811 VDDL 814
+ D+
Sbjct: 700 IGDV 703
Score = 70 (29.7 bits), Expect = 3.4e-83, Sum P(6) = 3.4e-83
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 633 VLISRSEQEVLPLLP-AIWKPEPLWTGKQVITAVL 666
+L+ + E+ + L P I KP LWTGKQV + +L
Sbjct: 571 ILVGKDEKIKVRLPPPTILKPVTLWTGKQVFSVIL 605
Score = 42 (19.8 bits), Expect = 1.5e-47, Sum P(5) = 1.5e-47
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 557 EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
E R +A+ V + N Y + +N PL + DH
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDH 58
Score = 39 (18.8 bits), Expect = 2.7e-77, Sum P(6) = 2.7e-77
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 44 CHHFKASRREVEKC 57
CHH A V+KC
Sbjct: 156 CHHCGAFNGTVKKC 169
Score = 39 (18.8 bits), Expect = 1.1e-34, Sum P(5) = 1.1e-34
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 905 GKNWISLMTTSGAKGSKV---NFQQISSHLG 932
G N ++M T G KG++ N ++ LG
Sbjct: 1229 GDNLRAVMATHGVKGTQTTSNNTYEVEKTLG 1259
Score = 37 (18.1 bits), Expect = 1.0e-46, Sum P(4) = 1.0e-46
Identities = 15/82 (18%), Positives = 33/82 (40%)
Query: 60 KLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTS 119
+ L KG K DL + ++S++ + S G+ +N+ + ++W
Sbjct: 614 RANLRTKGKQYCGKGEDLCVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQ 673
Query: 120 LQFAEAKLALLQFLKIETTKCG 141
+ A+A L + + + G
Sbjct: 674 NEAADAMSRLARLAPVYLSNRG 695
>UNIPROTKB|J9P629 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 CTD:11128 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:AAEX03002853 RefSeq:XP_536399.2
Ensembl:ENSCAFT00000047369 GeneID:479256 KEGG:cfa:479256
Uniprot:J9P629
Length = 1390
Score = 337 (123.7 bits), Expect = 4.3e-83, Sum P(6) = 4.3e-83
Identities = 70/152 (46%), Positives = 95/152 (62%)
Query: 890 SVINELLSEGLLKPTGKNWISL-MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGK 948
SVI + L+ K+ L M G+KGS +N Q+ + +GQQ + G RVP +
Sbjct: 757 SVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENR 816
Query: 949 TLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1008
+LP F P A GF+ + F +GL P E++FH MAGREGLVDTAVKT+ +GY+QR L+
Sbjct: 817 SLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLV 876
Query: 1009 KNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
K+LE L YD +VR + G I+QF YG DG+D
Sbjct: 877 KSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD 908
Score = 334 (122.6 bits), Expect = 4.3e-83, Sum P(6) = 4.3e-83
Identities = 112/342 (32%), Positives = 168/342 (49%)
Query: 276 KAGH-SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQP 331
+AG S L +LVPP+ R PS D E T+ L++++ N + ++
Sbjct: 243 EAGKPSDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA 301
Query: 332 DNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYAC 391
++I+ W LQ + + + + +MA +K F Q+L GK+ +
Sbjct: 302 -KTQMIMEDWDFLQLQCALYINSELSGIPLNMAP------KKWTRGFVQRLKGKQGRF-- 352
Query: 392 RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
R +S I P LR+ E P +V K+ + +++ ++L KL
Sbjct: 353 RGNLSGKRVDFSGRTVISPDPNLRID--EVAVPVHVAKI---LTFPEKVNKANINFLRKL 407
Query: 452 STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE---GKMVYRHLQDGDVVLVNRQ 508
+R P + ++ T ++ G E G +V RHL DGDVVL NRQ
Sbjct: 408 --VRNGPEVHPGANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQ 465
Query: 509 PTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVN 568
P+LHK SIMAH+ +V K +T R + C+ YNADFDGDEMN+H PQ E ++AEA ++
Sbjct: 466 PSLHKLSIMAHLAKV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMG 524
Query: 569 ANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
V P NG+PL + IQD + A LLT KDTF +R + CQ
Sbjct: 525 TKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQ 566
Score = 216 (81.1 bits), Expect = 4.3e-83, Sum P(6) = 4.3e-83
Identities = 43/89 (48%), Positives = 60/89 (67%)
Query: 1115 DKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEM 1174
D+ ++ K FL+ + K++ + +PG VG L +QS+GEP TQMTL TFH AG M
Sbjct: 1004 DRITPTQIEK--FLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061
Query: 1175 NVTLGIPRLQEILTIASKDIKTPVITCPL 1203
N+TLG+PR++EI+ ASK I TP+IT L
Sbjct: 1062 NITLGVPRIKEIIN-ASKAISTPIITAQL 1089
Score = 96 (38.9 bits), Expect = 4.3e-83, Sum P(6) = 4.3e-83
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRRE 53
C+TCG+ C GH+G+IDL +P ++ + IC C H S+ E
Sbjct: 69 CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121
Score = 74 (31.1 bits), Expect = 4.3e-83, Sum P(6) = 4.3e-83
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 754 IYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
I ++L+ G +DK + + + +G N A +S L+RL V+L GF+ G
Sbjct: 640 IQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIG 699
Query: 811 VDDL 814
+ D+
Sbjct: 700 IGDV 703
Score = 69 (29.3 bits), Expect = 4.3e-83, Sum P(6) = 4.3e-83
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 633 VLISRSEQEVLPLLP-AIWKPEPLWTGKQVITAVL 666
+L+ + E+ + L P I KP LWTGKQ+ + +L
Sbjct: 571 ILVGKDEKIKVHLPPPTILKPVTLWTGKQIFSVIL 605
Score = 40 (19.1 bits), Expect = 7.6e-47, Sum P(6) = 7.6e-47
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 557 EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
E R +A+ V + N Y + +N PL + DH
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDH 58
Score = 40 (19.1 bits), Expect = 1.1e-34, Sum P(5) = 1.1e-34
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 905 GKNWISLMTTSGAKGSKV---NFQQISSHLG 932
G N ++M T G KG++ N ++ LG
Sbjct: 1229 GDNLRAVMATHGVKGTRTTSNNTYEVEKTLG 1259
Score = 38 (18.4 bits), Expect = 7.6e-47, Sum P(6) = 7.6e-47
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 378 FRQKLMGKRVNYACRSVISPD 398
FR+ + K++++ C + SP+
Sbjct: 6 FRETDVAKKISHICFGMKSPE 26
Score = 37 (18.1 bits), Expect = 1.0e-46, Sum P(4) = 1.0e-46
Identities = 15/82 (18%), Positives = 33/82 (40%)
Query: 60 KLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTS 119
+ L KG K DL + ++S++ + S G+ +N+ + ++W
Sbjct: 614 RANLRTKGKQYCGKGEDLCVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQ 673
Query: 120 LQFAEAKLALLQFLKIETTKCG 141
+ A+A L + + + G
Sbjct: 674 NEAADAMSRLARLAPVYLSNRG 695
>UNIPROTKB|O14802 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=NAS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=NAS] [GO:0045087 "innate immune response" evidence=IMP]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IMP] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:CH471083 GO:GO:0045087 GO:GO:0051607 Gene3D:2.40.40.20
InterPro:IPR009010 Reactome:REACT_1788 GO:GO:0005666 GO:GO:0003899
GO:GO:0032728 KO:K03018 GO:GO:0006386 GO:GO:0006385 eggNOG:COG0086
GO:GO:0032549 HOVERGEN:HBG004339 CTD:11128 HOGENOM:HOG000222974
OMA:PRRPLIF OrthoDB:EOG4QVCB4 PANTHER:PTHR19376:SF15 EMBL:AF021351
EMBL:AL512628 EMBL:BC041089 EMBL:AY091459 IPI:IPI00024163
RefSeq:NP_008986.2 UniGene:Hs.436896 ProteinModelPortal:O14802
SMR:O14802 IntAct:O14802 STRING:O14802 PhosphoSite:O14802
PaxDb:O14802 PRIDE:O14802 Ensembl:ENST00000372371 GeneID:11128
KEGG:hsa:11128 UCSC:uc001jzn.3 GeneCards:GC10M079729
HGNC:HGNC:30074 HPA:HPA037926 MIM:607694 MIM:614258
neXtProt:NX_O14802 Orphanet:88637 Orphanet:77295
PharmGKB:PA134900426 InParanoid:O14802 PhylomeDB:O14802
ChiTaRS:POLR3A GenomeRNAi:11128 NextBio:42292 ArrayExpress:O14802
Bgee:O14802 CleanEx:HS_POLR3A Genevestigator:O14802
GermOnline:ENSG00000148606 Uniprot:O14802
Length = 1390
Score = 337 (123.7 bits), Expect = 5.5e-83, Sum P(6) = 5.5e-83
Identities = 70/152 (46%), Positives = 95/152 (62%)
Query: 890 SVINELLSEGLLKPTGKNWISL-MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGK 948
SVI + L+ K+ L M G+KGS +N Q+ + +GQQ + G RVP +
Sbjct: 757 SVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENR 816
Query: 949 TLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1008
+LP F P A GF+ + F +GL P E++FH MAGREGLVDTAVKT+ +GY+QR L+
Sbjct: 817 SLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLV 876
Query: 1009 KNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
K+LE L YD +VR + G I+QF YG DG+D
Sbjct: 877 KSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD 908
Score = 333 (122.3 bits), Expect = 5.5e-83, Sum P(6) = 5.5e-83
Identities = 112/342 (32%), Positives = 168/342 (49%)
Query: 276 KAGH-SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQP 331
+AG S L +LVPP+ R PS D E T+ L++++ N + ++
Sbjct: 243 EAGKPSDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA 301
Query: 332 DNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYAC 391
++I+ W LQ + + + + +MA +K F Q+L GK+ +
Sbjct: 302 -KTQMIMEDWDFLQLQCALYINSELSGIPLNMAP------KKWTRGFVQRLKGKQGRF-- 352
Query: 392 RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
R +S I P LR+ E P +V K+ + +++ ++L KL
Sbjct: 353 RGNLSGKRVDFSGRTVISPDPNLRID--EVAVPVHVAKI---LTFPEKVNKANINFLRKL 407
Query: 452 STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE---GKMVYRHLQDGDVVLVNRQ 508
++ P + ++ T ++ G E G +V RHL DGDVVL NRQ
Sbjct: 408 --VQNGPEVHPGANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQ 465
Query: 509 PTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVN 568
P+LHK SIMAH+ RV K +T R + C+ YNADFDGDEMN+H PQ E ++AEA ++
Sbjct: 466 PSLHKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMG 524
Query: 569 ANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
V P NG+PL + IQD + A LLT KDTF +R + CQ
Sbjct: 525 TKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQ 566
Score = 216 (81.1 bits), Expect = 5.5e-83, Sum P(6) = 5.5e-83
Identities = 43/89 (48%), Positives = 60/89 (67%)
Query: 1115 DKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEM 1174
D+ ++ K FL+ + K++ + +PG VG L +QS+GEP TQMTL TFH AG M
Sbjct: 1004 DRITPTQVEK--FLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061
Query: 1175 NVTLGIPRLQEILTIASKDIKTPVITCPL 1203
N+TLG+PR++EI+ ASK I TP+IT L
Sbjct: 1062 NITLGVPRIKEIIN-ASKAISTPIITAQL 1089
Score = 96 (38.9 bits), Expect = 5.5e-83, Sum P(6) = 5.5e-83
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRRE 53
C+TCG+ C GH+G+IDL +P ++ + IC C H S+ E
Sbjct: 69 CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121
Score = 74 (31.1 bits), Expect = 5.5e-83, Sum P(6) = 5.5e-83
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 754 IYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
I ++L+ G +DK + + + +G N A +S L+RL V+L GF+ G
Sbjct: 640 IQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIG 699
Query: 811 VDDL 814
+ D+
Sbjct: 700 IGDV 703
Score = 69 (29.3 bits), Expect = 5.5e-83, Sum P(6) = 5.5e-83
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 633 VLISRSEQEVLPLLP-AIWKPEPLWTGKQVITAVL 666
+L+ + E+ + L P I KP LWTGKQ+ + +L
Sbjct: 571 ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVIL 605
Score = 40 (19.1 bits), Expect = 1.5e-34, Sum P(5) = 1.5e-34
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 905 GKNWISLMTTSGAKGSKV---NFQQISSHLG 932
G N ++M T G KG++ N ++ LG
Sbjct: 1229 GDNLRAVMATHGVKGTRTTSNNTYEVEKTLG 1259
Score = 39 (18.8 bits), Expect = 4.3e-77, Sum P(6) = 4.3e-77
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 44 CHHFKASRREVEKC 57
CHH A V+KC
Sbjct: 156 CHHCGAFNGTVKKC 169
Score = 38 (18.4 bits), Expect = 4.9e-47, Sum P(5) = 4.9e-47
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 378 FRQKLMGKRVNYACRSVISPD 398
FR+ + K++++ C + SP+
Sbjct: 6 FRETDVAKKISHICFGMKSPE 26
>UNIPROTKB|Q5ZL98 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 HOVERGEN:HBG004339
CTD:11128 HOGENOM:HOG000222974 OrthoDB:EOG4QVCB4
PANTHER:PTHR19376:SF15 EMBL:AJ719836 IPI:IPI00580235
RefSeq:NP_001006500.1 UniGene:Gga.11367 ProteinModelPortal:Q5ZL98
STRING:Q5ZL98 PRIDE:Q5ZL98 GeneID:423727 KEGG:gga:423727
InParanoid:Q5ZL98 NextBio:20826153 Uniprot:Q5ZL98
Length = 1390
Score = 339 (124.4 bits), Expect = 3.5e-82, Sum P(6) = 3.5e-82
Identities = 70/152 (46%), Positives = 95/152 (62%)
Query: 890 SVINELLSEGLLKPTGK-NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGK 948
SVI + L+ K N +M G+KGS +N Q+ + +GQQ + G RVP +
Sbjct: 757 SVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENR 816
Query: 949 TLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1008
+LP F P A GF+ + F +GL P E++FH MAGREGLVDTAVKT+ +GY+QR L+
Sbjct: 817 SLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLV 876
Query: 1009 KNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
K+LE L YD +VR + G I+QF YG DG+D
Sbjct: 877 KSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD 908
Score = 337 (123.7 bits), Expect = 3.5e-82, Sum P(6) = 3.5e-82
Identities = 111/342 (32%), Positives = 169/342 (49%)
Query: 276 KAGH-SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQP 331
+AG S L +LVPP+ R PS D E T+ L++++ N + ++
Sbjct: 243 EAGKPSDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA 301
Query: 332 DNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYAC 391
++I+ W LQ + + + + +MA +K F Q+L GK+ +
Sbjct: 302 -KTQMIMEDWDFLQLQCALYINSELSGIPLNMAP------KKWTRGFVQRLKGKQGRF-- 352
Query: 392 RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
R +S I P LR+ E P +V K+ + +++ +++ KL
Sbjct: 353 RGNLSGKRVDFSGRTVISPDPNLRID--EVAVPIHVAKI---LTFPEKVNKANINFMRKL 407
Query: 452 STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE---GKMVYRHLQDGDVVLVNRQ 508
+R P+ + ++ T ++ G E G +V RHL DGD+VL NRQ
Sbjct: 408 --VRNGPDVHPGANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVERHLIDGDIVLFNRQ 465
Query: 509 PTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVN 568
P+LHK SIMAH+ RV K +T R + C+ YNADFDGDEMN+H PQ E ++AEA ++
Sbjct: 466 PSLHKLSIMAHIARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMG 524
Query: 569 ANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
V P NG+PL + IQD + A LLT KDTF +R + CQ
Sbjct: 525 TKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQ 566
Score = 217 (81.4 bits), Expect = 3.5e-82, Sum P(6) = 3.5e-82
Identities = 43/89 (48%), Positives = 60/89 (67%)
Query: 1115 DKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEM 1174
D+ ++ K FL+ + K++ + +PG VG L +QS+GEP TQMTL TFH AG M
Sbjct: 1004 DRITPTQLEK--FLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061
Query: 1175 NVTLGIPRLQEILTIASKDIKTPVITCPL 1203
N+TLG+PR++EI+ ASK I TP+IT L
Sbjct: 1062 NITLGVPRIKEIIN-ASKAISTPIITAQL 1089
Score = 84 (34.6 bits), Expect = 3.5e-82, Sum P(6) = 3.5e-82
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRRE 53
C+TCG+ C GH+G+IDL +P ++ + IC C S E
Sbjct: 69 CETCGKNLADCLGHYGYIDLELPCFHVGYFKAVIGILQMICKTCCRIMLSVEE 121
Score = 75 (31.5 bits), Expect = 3.5e-82, Sum P(6) = 3.5e-82
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 633 VLISRSEQEVLPLLP-AIWKPEPLWTGKQVITAVL 666
+L+ + E+ + L P AI KP LWTGKQV +++L
Sbjct: 571 ILVGKDEKIKVRLPPPAILKPVTLWTGKQVFSSIL 605
Score = 65 (27.9 bits), Expect = 3.5e-82, Sum P(6) = 3.5e-82
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 754 IYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
I ++L+ G +DK + + + +G A +S L+RL V+L GF+ G
Sbjct: 640 IQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYLSNRGFSIG 699
Query: 811 VDDL 814
+ D+
Sbjct: 700 IGDV 703
Score = 49 (22.3 bits), Expect = 4.9e-47, Sum P(4) = 4.9e-47
Identities = 18/95 (18%), Positives = 38/95 (40%)
Query: 47 FKASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNY 106
F + + + C K L KG K DL ++S++ + S G+
Sbjct: 601 FSSILKPSDDCPVKANLRTKGKQYCGKGEDLCYNDSYVTIQNSELMSGSMDKGTLGSGSK 660
Query: 107 DNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCG 141
+N+ + ++W ++ A+A L + + + G
Sbjct: 661 NNIFYILLRDWGQVEAADAMSRLARLAPVYLSNRG 695
Score = 43 (20.2 bits), Expect = 9.0e-34, Sum P(5) = 9.0e-34
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 905 GKNWISLMTTSGAKGSKV---NFQQISSHLG 932
G N ++M T G KG+K N ++ LG
Sbjct: 1229 GDNLRAVMATHGVKGTKTSSNNTYEVEKTLG 1259
Score = 41 (19.5 bits), Expect = 7.1e-16, Sum P(4) = 7.1e-16
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 570 NNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
N + V P +P S + + S +++ K + RD F Q
Sbjct: 927 NIRAVYPCRSEPALSKNELVLTSESIMKKNEFLCCRDSFLQ 967
Score = 39 (18.8 bits), Expect = 9.2e-47, Sum P(6) = 9.2e-47
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 378 FRQKLMGKRVNYACRSVISPD 398
FR+ + K++++ C + SP+
Sbjct: 6 FRESDVAKKISHICFGMKSPE 26
Score = 38 (18.4 bits), Expect = 9.2e-47, Sum P(6) = 9.2e-47
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 557 EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
E R +A+ V + N Y + ++ PL+ + DH
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNHHAPLQYGVLDH 58
>UNIPROTKB|F1NIK7 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045087
"innate immune response" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
IPI:IPI00580235 EMBL:AADN02027942 EMBL:AADN02027940
EMBL:AADN02027941 Ensembl:ENSGALT00000007929 Uniprot:F1NIK7
Length = 1390
Score = 339 (124.4 bits), Expect = 5.7e-82, Sum P(6) = 5.7e-82
Identities = 70/152 (46%), Positives = 95/152 (62%)
Query: 890 SVINELLSEGLLKPTGK-NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGK 948
SVI + L+ K N +M G+KGS +N Q+ + +GQQ + G RVP +
Sbjct: 757 SVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENR 816
Query: 949 TLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1008
+LP F P A GF+ + F +GL P E++FH MAGREGLVDTAVKT+ +GY+QR L+
Sbjct: 817 SLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLV 876
Query: 1009 KNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
K+LE L YD +VR + G I+QF YG DG+D
Sbjct: 877 KSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD 908
Score = 337 (123.7 bits), Expect = 5.7e-82, Sum P(6) = 5.7e-82
Identities = 111/342 (32%), Positives = 169/342 (49%)
Query: 276 KAGH-SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQP 331
+AG S L +LVPP+ R PS D E T+ L++++ N + ++
Sbjct: 243 EAGKPSDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA 301
Query: 332 DNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYAC 391
++I+ W LQ + + + + +MA +K F Q+L GK+ +
Sbjct: 302 -KTQMIMEDWDFLQLQCALYINSELSGIPLNMAP------KKWTRGFVQRLKGKQGRF-- 352
Query: 392 RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
R +S I P LR+ E P +V K+ + +++ +++ KL
Sbjct: 353 RGNLSGKRVDFSGRTVISPDPNLRID--EVAVPIHVAKI---LTFPEKVNKANINFMRKL 407
Query: 452 STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE---GKMVYRHLQDGDVVLVNRQ 508
+R P+ + ++ T ++ G E G +V RHL DGD+VL NRQ
Sbjct: 408 --VRNGPDVHPGANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVERHLIDGDIVLFNRQ 465
Query: 509 PTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVN 568
P+LHK SIMAH+ RV K +T R + C+ YNADFDGDEMN+H PQ E ++AEA ++
Sbjct: 466 PSLHKLSIMAHIARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMG 524
Query: 569 ANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
V P NG+PL + IQD + A LLT KDTF +R + CQ
Sbjct: 525 TKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQ 566
Score = 217 (81.4 bits), Expect = 5.7e-82, Sum P(6) = 5.7e-82
Identities = 43/89 (48%), Positives = 60/89 (67%)
Query: 1115 DKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEM 1174
D+ ++ K FL+ + K++ + +PG VG L +QS+GEP TQMTL TFH AG M
Sbjct: 1004 DRITPTQLEK--FLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061
Query: 1175 NVTLGIPRLQEILTIASKDIKTPVITCPL 1203
N+TLG+PR++EI+ ASK I TP+IT L
Sbjct: 1062 NITLGVPRIKEIIN-ASKAISTPIITAQL 1089
Score = 84 (34.6 bits), Expect = 5.7e-82, Sum P(6) = 5.7e-82
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRRE 53
C+TCG+ C GH+G+IDL +P ++ + IC C S E
Sbjct: 69 CETCGKNLADCLGHYGYIDLELPCFHVGYFKAVIGILQMICKTCCRIMLSVEE 121
Score = 73 (30.8 bits), Expect = 5.7e-82, Sum P(6) = 5.7e-82
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 633 VLISRSEQEVLPLLP-AIWKPEPLWTGKQVITAVL 666
+L+ + E+ + L P AI KP LWTGKQV + +L
Sbjct: 571 ILVGKDEKIKVRLPPPAILKPVTLWTGKQVFSLIL 605
Score = 65 (27.9 bits), Expect = 5.7e-82, Sum P(6) = 5.7e-82
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 754 IYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
I ++L+ G +DK + + + +G A +S L+RL V+L GF+ G
Sbjct: 640 IQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYLSNRGFSIG 699
Query: 811 VDDL 814
+ D+
Sbjct: 700 IGDV 703
Score = 47 (21.6 bits), Expect = 7.9e-47, Sum P(4) = 7.9e-47
Identities = 17/87 (19%), Positives = 35/87 (40%)
Query: 55 EKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKP 114
+ C K L KG K DL ++S++ + S G+ +N+ +
Sbjct: 609 DDCPVKANLRTKGKQYCGKGEDLCYNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILL 668
Query: 115 QEWTSLQFAEAKLALLQFLKIETTKCG 141
++W ++ A+A L + + + G
Sbjct: 669 RDWGQVEAADAMSRLARLAPVYLSNRG 695
Score = 43 (20.2 bits), Expect = 1.4e-33, Sum P(5) = 1.4e-33
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 905 GKNWISLMTTSGAKGSKV---NFQQISSHLG 932
G N ++M T G KG+K N ++ LG
Sbjct: 1229 GDNLRAVMATHGVKGTKTSSNNTYEVEKTLG 1259
Score = 41 (19.5 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 570 NNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
N + V P +P S + + S +++ K + RD F Q
Sbjct: 927 NIRAVYPCRSEPALSKNELVLTSESIMKKNEFLCCRDSFLQ 967
Score = 39 (18.8 bits), Expect = 1.5e-46, Sum P(6) = 1.5e-46
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 378 FRQKLMGKRVNYACRSVISPD 398
FR+ + K++++ C + SP+
Sbjct: 6 FRESDVAKKISHICFGMKSPE 26
Score = 38 (18.4 bits), Expect = 1.5e-46, Sum P(6) = 1.5e-46
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 557 EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
E R +A+ V + N Y + ++ PL+ + DH
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNHHAPLQYGVLDH 58
>UNIPROTKB|I3LJR4 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04992
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GeneTree:ENSGT00700000104490 EMBL:FP565284
Ensembl:ENSSSCT00000029425 Uniprot:I3LJR4
Length = 1010
Score = 351 (128.6 bits), Expect = 9.4e-78, Sum P(6) = 9.4e-78
Identities = 65/135 (48%), Positives = 92/135 (68%)
Query: 912 MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
M SGAKGSK+N Q+ + +GQQ +EGKR+P +TLP F D+ P + GF+ + +L
Sbjct: 769 MVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYL 828
Query: 972 TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
GL P E++FH M GREGL+DTAVKT+ +GY+QR LIK++E + + YD +VR++ +VQ
Sbjct: 829 AGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQ 888
Query: 1032 FCYGEDGVDVHQTSF 1046
YGEDG+ F
Sbjct: 889 LRYGEDGLAGESVEF 903
Score = 274 (101.5 bits), Expect = 9.4e-78, Sum P(6) = 9.4e-78
Identities = 56/127 (44%), Positives = 76/127 (59%)
Query: 482 KDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTY 540
K SD + G V RH+ DGD+V+ NRQPTLHK S+M H VR+L T R++ + + Y
Sbjct: 434 KPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS-TFRLNLSVTTPY 492
Query: 541 NADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKD 600
NADFDGDEMN+H PQ +RAE + V P + P+ ++QD + + TK+D
Sbjct: 493 NADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRD 552
Query: 601 TFLNRDE 607
FL R E
Sbjct: 553 VFLERGE 559
Score = 199 (75.1 bits), Expect = 9.4e-78, Sum P(6) = 9.4e-78
Identities = 68/244 (27%), Positives = 123/244 (50%)
Query: 242 LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
L P V +I +++ + E C F+ M+ + A + V+ VPP+ R P+
Sbjct: 216 LSPERVHEIFKRISDEE---C-FVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266
Query: 300 GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV-IVARWMNLQQ-SVNVLFDGKNA 357
G + + T L+ +++ N L N+ + A ++A + L Q V + D +
Sbjct: 267 QGSARNQDDLTHKLADIVKINNQLRR---NEQNGAAAHVIAEDVKLLQFHVATMVDNELP 323
Query: 358 AGQRDMA-SG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
R M SG + Q L+ KEG R LMGKRV+++ R+VI+PDP L+++++G+P
Sbjct: 324 GLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRS 383
Query: 412 FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIG 467
A +T+ E VTP+N+ +L++ + G +PGA + + D++ P + + G
Sbjct: 384 IAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTG 443
Query: 468 RKLD 471
K++
Sbjct: 444 YKVE 447
Score = 111 (44.1 bits), Expect = 9.4e-78, Sum P(6) = 9.4e-78
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFC 44
C+TC CPGHFGHI+L PV++ + +CFFC
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114
Score = 79 (32.9 bits), Expect = 9.4e-78, Sum P(6) = 9.4e-78
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 647 PAIWKPEPLWTGKQVITAVL-NHI 669
PAI KP PLWTGKQ+ + ++ HI
Sbjct: 577 PAILKPRPLWTGKQIFSLIIPGHI 600
Score = 48 (22.0 bits), Expect = 4.3e-34, Sum P(3) = 4.3e-34
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 852 DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL 895
D +K+ +++ + + G A V D+K+ L H ++ V NEL
Sbjct: 282 DIVKINNQLRRNEQNGAAAHVIAEDVKL---LQFHVATMVDNEL 322
Score = 46 (21.3 bits), Expect = 9.4e-78, Sum P(6) = 9.4e-78
Identities = 19/102 (18%), Positives = 41/102 (40%)
Query: 754 IYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
+ +L+ G++ K LVH G + S + + +L + G T G+
Sbjct: 630 VENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGI 689
Query: 812 DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
D + ++ +N + + K+ +E +E E++P
Sbjct: 690 GDSIADSKTYQDIQNTIKKA----KQDVIEVIEKAHNNELEP 727
Score = 39 (18.8 bits), Expect = 3.0e-37, Sum P(5) = 3.0e-37
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 360 QRDMASGICQLLEKKEGLFRQKLMGKRV 387
+R M G + ++ L + +MG RV
Sbjct: 447 ERHMCDGDIVIFNRQPTLHKMSMMGHRV 474
Score = 39 (18.8 bits), Expect = 3.7e-33, Sum P(3) = 3.7e-33
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 246 DVKDIIEKLWENEFE 260
DV ++IEK NE E
Sbjct: 712 DVIEVIEKAHNNELE 726
Score = 38 (18.4 bits), Expect = 4.7e-49, Sum P(4) = 4.7e-49
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 566 IVNANNQYVRPSNGDPLRSLIQDHI 590
I A+N + P+ G+ LR ++ +
Sbjct: 717 IEKAHNNELEPTPGNTLRQTFENQV 741
>UNIPROTKB|F1NJE0 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF04998 Pfam:PF05000 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003899 PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:AADN02014782 EMBL:AADN02014783
IPI:IPI00819994 Ensembl:ENSGALT00000037150 OMA:QKKMARV
ArrayExpress:F1NJE0 Uniprot:F1NJE0
Length = 917
Score = 539 (194.8 bits), Expect = 4.0e-72, Sum P(2) = 4.0e-72
Identities = 111/240 (46%), Positives = 161/240 (67%)
Query: 811 VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
++D+L+ + +R+R + S + G V AL L + + + ++ K + + D
Sbjct: 1 IEDILVKPEADRKRHKIIKKSSQCGIEVVRAALNLPETSSCEDVQGKWQDAHLCKDQRDF 60
Query: 871 AVAYFDMKMTSQLNKHTSSSVINEL-LSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISS 929
+ D+K ++N + + +N++ + GL + +N + LM SGAKGS VN QIS
Sbjct: 61 NMV--DLKFKEEVNNYNNE--VNKVCMPFGLHRSFPENNLQLMVQSGAKGSTVNTVQISC 116
Query: 930 HLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREG 989
LGQ ELEG+R P M SGK+LP F P+D++P +GGF+ RFLTG++P E++FHCMAGREG
Sbjct: 117 LLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREG 176
Query: 990 LVDTAVKTSRSGYLQR--CLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFI 1047
LVDTAVKTSRSGYLQR C+IK+LE L + YD +VRD+DGS+VQF YGEDG+D+ +T F+
Sbjct: 177 LVDTAVKTSRSGYLQRNRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFL 236
Score = 272 (100.8 bits), Expect = 4.0e-72, Sum P(2) = 4.0e-72
Identities = 58/87 (66%), Positives = 70/87 (80%)
Query: 1118 LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVT 1177
LS++ K D L L K+ SL PGE VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVT
Sbjct: 391 LSSDRLK-DLLYL---KWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVT 446
Query: 1178 LGIPRLQEILTIASKDIKTPVITCPLL 1204
LGIPRL+EIL +AS +IKTP+++ P+L
Sbjct: 447 LGIPRLREILMVASANIKTPMMSVPVL 473
Score = 38 (18.4 bits), Expect = 4.8e-18, Sum P(2) = 4.8e-18
Identities = 19/57 (33%), Positives = 25/57 (43%)
Query: 347 SVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
SV G + RD A+ QLL+ L +K R Y ++ PDP LAV
Sbjct: 303 SVKTQIPGGESINGRDPAT--LQLLKMWYELDEKK----RRKYLKKANKCPDPSLAV 353
Score = 37 (18.1 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 814 LLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
LL + K K + G E I R L+ E+D K + ++KA
Sbjct: 294 LLFSQKKMASVKTQIPGGESINGRDPATLQLLKMWYELDEKKRRKYLKKA 343
>UNIPROTKB|E2QXD8 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
EMBL:AAEX03002853 Ensembl:ENSCAFT00000024699 Uniprot:E2QXD8
Length = 1376
Score = 350 (128.3 bits), Expect = 5.7e-71, Sum P(6) = 5.7e-71
Identities = 128/401 (31%), Positives = 191/401 (47%)
Query: 276 KAGH-SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQP 331
+AG S L +LVPP+ R PS D E T+ L++++ N + ++
Sbjct: 243 EAGKPSDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA 301
Query: 332 DNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYAC 391
++I+ W LQ + + + + +MA +K F Q+L GK+ +
Sbjct: 302 -KTQMIMEDWDFLQLQCALYINSELSGIPLNMAP------KKWTRGFVQRLKGKQGRF-- 352
Query: 392 RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
R +S I P LR+ E P +V K+ + +++ ++L KL
Sbjct: 353 RGNLSGKRVDFSGRTVISPDPNLRID--EVAVPVHVAKI---LTFPEKVNKANINFLRKL 407
Query: 452 STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE---GKMVYRHLQDGDVVLVNRQ 508
+R P + ++ T ++ G E G +V RHL DGDVVL NRQ
Sbjct: 408 --VRNGPEVHPGANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQ 465
Query: 509 PTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVN 568
P+LHK SIMAH+ +V K +T R + C+ YNADFDGDEMN+H PQ E ++AEA ++
Sbjct: 466 PSLHKLSIMAHLAKV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMG 524
Query: 569 ANNQYVRPSNGDPLRSLIQDHI---VSAALLTKKDTFLNRDEFCQXXXXXXXXXXXXXXF 625
V P NG+PL + IQD + V A LLT KDTF +R + CQ
Sbjct: 525 TKANLVTPRNGEPLIAAIQDFLTAFVGAYLLTLKDTFFDRAKACQIIASI---------L 575
Query: 626 TGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL 666
GK +++ + LP P I KP LWTGKQ+ + +L
Sbjct: 576 VGKD-EKIKVH------LPP-PTILKPVTLWTGKQIFSVIL 608
Score = 337 (123.7 bits), Expect = 5.7e-71, Sum P(6) = 5.7e-71
Identities = 70/152 (46%), Positives = 95/152 (62%)
Query: 890 SVINELLSEGLLKPTGKNWISL-MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGK 948
SVI + L+ K+ L M G+KGS +N Q+ + +GQQ + G RVP +
Sbjct: 760 SVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENR 819
Query: 949 TLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1008
+LP F P A GF+ + F +GL P E++FH MAGREGLVDTAVKT+ +GY+QR L+
Sbjct: 820 SLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLV 879
Query: 1009 KNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
K+LE L YD +VR + G I+QF YG DG+D
Sbjct: 880 KSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD 911
Score = 96 (38.9 bits), Expect = 5.7e-71, Sum P(6) = 5.7e-71
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRRE 53
C+TCG+ C GH+G+IDL +P ++ + IC C H S+ E
Sbjct: 69 CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121
Score = 91 (37.1 bits), Expect = 5.7e-71, Sum P(6) = 5.7e-71
Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 1174 MNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
MN+TLG+PR++EI+ ASK I TP+IT L
Sbjct: 1047 MNITLGVPRIKEIIN-ASKAISTPIITAQL 1075
Score = 74 (31.1 bits), Expect = 5.7e-71, Sum P(6) = 5.7e-71
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 754 IYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
I ++L+ G +DK + + + +G N A +S L+RL V+L GF+ G
Sbjct: 643 IQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIG 702
Query: 811 VDDL 814
+ D+
Sbjct: 703 IGDV 706
Score = 60 (26.2 bits), Expect = 5.7e-71, Sum P(6) = 5.7e-71
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 1115 DKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTL 1163
D+ ++ K FL+ + K++ + +PG VG L +QSV S +TL
Sbjct: 1007 DRITPTQIEK--FLETCRDKYMRAQMEPGSAVGALCAQSVA--SMNITL 1051
Score = 40 (19.1 bits), Expect = 8.2e-34, Sum P(4) = 8.2e-34
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 905 GKNWISLMTTSGAKGSKV---NFQQISSHLG 932
G N ++M T G KG++ N ++ LG
Sbjct: 1215 GDNLRAVMATHGVKGTRTTSNNTYEVEKTLG 1245
Score = 40 (19.1 bits), Expect = 2.8e-33, Sum P(6) = 2.8e-33
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 557 EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
E R +A+ V + N Y + +N PL + DH
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDH 58
Score = 38 (18.4 bits), Expect = 2.8e-33, Sum P(6) = 2.8e-33
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 378 FRQKLMGKRVNYACRSVISPD 398
FR+ + K++++ C + SP+
Sbjct: 6 FRETDVAKKISHICFGMKSPE 26
Score = 37 (18.1 bits), Expect = 1.5e-35, Sum P(5) = 1.5e-35
Identities = 15/82 (18%), Positives = 33/82 (40%)
Query: 60 KLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTS 119
+ L KG K DL + ++S++ + S G+ +N+ + ++W
Sbjct: 617 RANLRTKGKQYCGKGEDLCVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQ 676
Query: 120 LQFAEAKLALLQFLKIETTKCG 141
+ A+A L + + + G
Sbjct: 677 NEAADAMSRLARLAPVYLSNRG 698
>UNIPROTKB|Q6NX41 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AC113189 GO:GO:0003899 IPI:IPI00031627
UniGene:Hs.270017 HGNC:HGNC:9187 ChiTaRS:POLR2A EMBL:BC067295
SMR:Q6NX41 STRING:Q6NX41 Ensembl:ENST00000572844 UCSC:uc002ghe.3
HOVERGEN:HBG097653 Uniprot:Q6NX41
Length = 566
Score = 270 (100.1 bits), Expect = 2.0e-42, Sum P(3) = 2.0e-42
Identities = 55/125 (44%), Positives = 75/125 (60%)
Query: 482 KDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTY 540
K SD + G V RH+ DGD+V+ NRQPTLHK S+M H VR+L T R++ + + Y
Sbjct: 434 KPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS-TFRLNLSVTTPY 492
Query: 541 NADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKD 600
NADFDGDEMN+H PQ +RAE + V P + P+ ++QD + + TK+D
Sbjct: 493 NADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRD 552
Query: 601 TFLNR 605
FL R
Sbjct: 553 VFLER 557
Score = 199 (75.1 bits), Expect = 2.0e-42, Sum P(3) = 2.0e-42
Identities = 68/244 (27%), Positives = 123/244 (50%)
Query: 242 LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
L P V +I +++ + E C F+ M+ + A + V+ VPP+ R P+
Sbjct: 216 LSPERVHEIFKRISDEE---C-FVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266
Query: 300 GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV-IVARWMNLQQ-SVNVLFDGKNA 357
G + + T L+ +++ N L N+ + A ++A + L Q V + D +
Sbjct: 267 QGSARNQDDLTHKLADIVKINNQLRR---NEQNGAAAHVIAEDVKLLQFHVATMVDNELP 323
Query: 358 AGQRDMA-SG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
R M SG + Q L+ KEG R LMGKRV+++ R+VI+PDP L+++++G+P
Sbjct: 324 GLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRS 383
Query: 412 FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIG 467
A +T+ E VTP+N+ +L++ + G +PGA + + D++ P + + G
Sbjct: 384 IAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTG 443
Query: 468 RKLD 471
K++
Sbjct: 444 YKVE 447
Score = 111 (44.1 bits), Expect = 2.0e-42, Sum P(3) = 2.0e-42
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFC 44
C+TC CPGHFGHI+L PV++ + +CFFC
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114
>UNIPROTKB|E1C4T2 [details] [associations]
symbol:POLR1A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR007081 InterPro:IPR015699 Pfam:PF04998 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:AADN02014782 EMBL:AADN02014783 IPI:IPI00576593
Ensembl:ENSGALT00000025424 ArrayExpress:E1C4T2 Uniprot:E1C4T2
Length = 745
Score = 272 (100.8 bits), Expect = 8.0e-40, Sum P(2) = 8.0e-40
Identities = 58/87 (66%), Positives = 70/87 (80%)
Query: 1118 LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVT 1177
LS++ K D L L K+ SL PGE VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVT
Sbjct: 221 LSSDRLK-DLLYL---KWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVT 276
Query: 1178 LGIPRLQEILTIASKDIKTPVITCPLL 1204
LGIPRL+EIL +AS +IKTP+++ P+L
Sbjct: 277 LGIPRLREILMVASANIKTPMMSVPVL 303
Score = 243 (90.6 bits), Expect = 8.0e-40, Sum P(2) = 8.0e-40
Identities = 47/66 (71%), Positives = 57/66 (86%)
Query: 984 MAGREGLVDTAVKTSRSGYLQR--CLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV 1041
MAGREGLVDTAVKTSRSGYLQR C+IK+LE L + YD +VRD+DGS+VQF YGEDG+D+
Sbjct: 1 MAGREGLVDTAVKTSRSGYLQRNRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDI 60
Query: 1042 HQTSFI 1047
+T F+
Sbjct: 61 PKTQFL 66
Score = 38 (18.4 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 19/57 (33%), Positives = 25/57 (43%)
Query: 347 SVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
SV G + RD A+ QLL+ L +K R Y ++ PDP LAV
Sbjct: 133 SVKTQIPGGESINGRDPAT--LQLLKMWYELDEKK----RRKYLKKANKCPDPSLAV 183
Score = 37 (18.1 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 814 LLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
LL + K K + G E I R L+ E+D K + ++KA
Sbjct: 124 LLFSQKKMASVKTQIPGGESINGRDPATLQLLKMWYELDEKKRRKYLKKA 173
>UNIPROTKB|P37871 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0046677
GO:GO:0006351 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
EMBL:D64127 EMBL:L24376 KO:K03046 ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 HOGENOM:HOG000218387 EMBL:L43593 PIR:G69698
RefSeq:NP_387989.2 ProteinModelPortal:P37871 SMR:P37871
DIP:DIP-49022N IntAct:P37871 PRIDE:P37871
EnsemblBacteria:EBBACT00000003012 GeneID:935977 KEGG:bsu:BSU01080
PATRIC:18971725 GenoList:BSU01080 BioCyc:BSUB:BSU01080-MONOMER
Uniprot:P37871
Length = 1199
Score = 174 (66.3 bits), Expect = 1.0e-31, Sum P(7) = 1.0e-31
Identities = 37/95 (38%), Positives = 57/95 (60%)
Query: 503 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
VL+NR PTLH+ I A +++G + +R+H C+ YNADFDGD+M VH P ++AE
Sbjct: 410 VLLNRAPTLHRLGIQAFEPTLVEG-RAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAE 468
Query: 563 AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
A ++ A + P +G P+ + QD ++ LT
Sbjct: 469 ARILMLAAQNILNPKDGKPVVTPSQDMVLGNYYLT 503
Score = 135 (52.6 bits), Expect = 1.0e-31, Sum P(7) = 1.0e-31
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 1143 GEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
GE VG++A+QS+GEP TQ+T+ TFH G ++T G+PR+QE+
Sbjct: 916 GEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL 959
Score = 130 (50.8 bits), Expect = 1.0e-31, Sum P(7) = 1.0e-31
Identities = 33/82 (40%), Positives = 49/82 (59%)
Query: 344 LQQSVNVLFD-GKNAA-----GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
LQ++V+ L D G+ G R + S + +L+ K+G FRQ L+GKRV+Y+ RSVI
Sbjct: 288 LQEAVDALIDNGRRGRPVTGPGNRPLKS-LSHMLKGKQGRFRQNLLGKRVDYSGRSVIVV 346
Query: 398 DPYLAVNEIGIPPYFALRLTYP 419
P+L + + G+P AL L P
Sbjct: 347 GPHLKMYQCGLPKEMALELFKP 368
Score = 91 (37.1 bits), Expect = 1.0e-31, Sum P(7) = 1.0e-31
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 970 FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
F GL EY+ R+GL DTA+KT+ SGYL R L+ ++ D +R+ D
Sbjct: 767 FREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVD------VAQDVIIRETD 817
Score = 56 (24.8 bits), Expect = 1.0e-31, Sum P(7) = 1.0e-31
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 890 SVINELLSEGLLKPTGK-NWISLMTTSGAKGSKVNFQQISSHLG 932
S +++ L+K + N I +M+ SGA+G+ NF Q++ G
Sbjct: 706 SAAKDVIQGKLMKSLDELNPIYMMSDSGARGNASNFTQLAGMRG 749
Score = 49 (22.3 bits), Expect = 1.0e-31, Sum P(7) = 1.0e-31
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 790 LLSALSRLFTVFLQMHGFTCGVDDLLILKDKE 821
+L + L + G T GV D+++L DK+
Sbjct: 639 MLDRMKNLGFKYSTKAGITVGVSDIVVLDDKQ 670
Score = 48 (22.0 bits), Expect = 5.6e-19, Sum P(7) = 5.6e-19
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 558 VSRAEAYNIVNANNQY--VRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
V + A+NI +A + V+P D L S+I++H V LL + T L+R
Sbjct: 375 VEKGLAHNIKSAKRKIERVQPEVWDVLESVIKEHPV---LLNRAPT-LHR 420
Score = 42 (19.8 bits), Expect = 6.7e-10, Sum P(6) = 6.7e-10
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 641 EVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKL 684
+VLP++P +P G + T+ LN + R V+ R +L
Sbjct: 229 DVLPVIPPELRPMVQLDGGRFATSDLNDLYRR----VINRNNRL 268
Score = 41 (19.5 bits), Expect = 4.7e-23, Sum P(6) = 4.7e-23
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 370 LLEKKEGLFRQKLMGKRVNYAC 391
L +K+GLF +++ G ++ C
Sbjct: 39 LKPEKDGLFCERIFGPTKDWEC 60
Score = 38 (18.4 bits), Expect = 1.0e-31, Sum P(7) = 1.0e-31
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 1 CKTCG---QRQFLCPGHFGHIDLVVPV 24
C CG R + GHI+L PV
Sbjct: 75 CDRCGVEVTRAKVRRERMGHIELAAPV 101
>TIGR_CMR|BA_0103 [details] [associations]
symbol:BA_0103 "DNA-directed RNA polymerase, beta' subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 EMBL:X89230 RefSeq:NP_842671.2
RefSeq:YP_016708.1 RefSeq:YP_026389.1 ProteinModelPortal:P77819
IntAct:P77819 DNASU:1086436 EnsemblBacteria:EBBACT00000011911
EnsemblBacteria:EBBACT00000018208 EnsemblBacteria:EBBACT00000020960
GeneID:1086436 GeneID:2818165 GeneID:2851002 KEGG:ban:BA_0103
KEGG:bar:GBAA_0103 KEGG:bat:BAS0103 HOGENOM:HOG000218387
BioCyc:BANT260799:GJAJ-114-MONOMER
BioCyc:BANT261594:GJ7F-116-MONOMER Uniprot:P77819
Length = 1203
Score = 175 (66.7 bits), Expect = 1.7e-31, Sum P(7) = 1.7e-31
Identities = 37/95 (38%), Positives = 57/95 (60%)
Query: 503 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
VL+NR PTLH+ I A +++G + +R+H C+ YNADFDGD+M VH P ++AE
Sbjct: 410 VLLNRAPTLHRLGIQAFEPTLVEG-RAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAE 468
Query: 563 AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
A ++ A + P +G P+ + QD ++ LT
Sbjct: 469 ARLLMLAAQNILNPKDGKPVVTPSQDMVLGNYYLT 503
Score = 137 (53.3 bits), Expect = 1.7e-31, Sum P(7) = 1.7e-31
Identities = 24/44 (54%), Positives = 34/44 (77%)
Query: 1143 GEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
GE VG++A+QS+GEP TQ+T+ TFH G ++T G+PR+QEI
Sbjct: 916 GEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEI 959
Score = 126 (49.4 bits), Expect = 1.7e-31, Sum P(7) = 1.7e-31
Identities = 33/82 (40%), Positives = 48/82 (58%)
Query: 344 LQQSVNVLFD-GKNAA-----GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
LQ++V+ L D G+ G R + S + +L+ K+G FRQ L+GKRV+Y+ RSVI
Sbjct: 288 LQEAVDALIDNGRRGRPVTGPGNRPLKS-LSHMLKGKQGRFRQNLLGKRVDYSGRSVIVV 346
Query: 398 DPYLAVNEIGIPPYFALRLTYP 419
P L + + G+P AL L P
Sbjct: 347 GPNLKMYQCGLPKEMALELFKP 368
Score = 90 (36.7 bits), Expect = 1.7e-31, Sum P(7) = 1.7e-31
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 970 FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
F GL EY+ R+GL DTA+KT+ SGYL R L+ ++ D VR+ D
Sbjct: 767 FREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVD------VAQDVIVREDD 817
Score = 58 (25.5 bits), Expect = 1.7e-31, Sum P(7) = 1.7e-31
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 894 ELLSEGLLKPTGK-NWISLMTTSGAKGSKVNFQQISSHLG 932
+++ L+K K N I +M+ SGA+G+ NF Q++ G
Sbjct: 710 DVIQGKLMKSLNKRNPIFMMSDSGARGNASNFTQLAGMRG 749
Score = 48 (22.0 bits), Expect = 1.1e-18, Sum P(7) = 1.1e-18
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 558 VSRAEAYNIVNANNQY--VRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
V + A+NI +A + V+P D L S+I++H V LL + T L+R
Sbjct: 375 VEKGLAHNIKSAKRKIERVQPEVWDVLESVIKEHPV---LLNRAPT-LHR 420
Score = 47 (21.6 bits), Expect = 1.7e-31, Sum P(7) = 1.7e-31
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 790 LLSALSRLFTVFLQMHGFTCGVDDLLILKDKE 821
+L + L + G T GV D+L+L +K+
Sbjct: 639 MLDRMKNLGFKYSTKAGITVGVSDILVLGEKD 670
Score = 43 (20.2 bits), Expect = 1.9e-23, Sum P(6) = 1.9e-23
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 370 LLEKKEGLFRQKLMGKRVNYAC 391
L +K+GLF +++ G + ++ C
Sbjct: 39 LKPEKDGLFCERIFGPQKDWEC 60
Score = 42 (19.8 bits), Expect = 3.5e-10, Sum P(6) = 3.5e-10
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 641 EVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKL 684
+VLP++P +P G + T+ LN + R V+ R +L
Sbjct: 229 DVLPVIPPELRPMVQLDGGRFATSDLNDLYRR----VINRNNRL 268
Score = 38 (18.4 bits), Expect = 1.7e-31, Sum P(7) = 1.7e-31
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 1 CKTCG---QRQFLCPGHFGHIDLVVPV 24
C CG R + GHI+L PV
Sbjct: 75 CDRCGVEVTRAKVRRERMGHIELAAPV 101
>UNIPROTKB|P0A674 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0006351 EMBL:BX842574
Gene3D:2.40.40.20 InterPro:IPR009010 DrugBank:DB01045 GO:GO:0003899
eggNOG:COG0086 EMBL:L27989 KO:K03046 HOGENOM:HOG000218386
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G70535
RefSeq:NP_215182.1 RefSeq:NP_335108.1 RefSeq:YP_006514010.1
ProteinModelPortal:P0A674 SMR:P0A674 IntAct:P0A674 PRIDE:P0A674
EnsemblBacteria:EBMYCT00000001410 EnsemblBacteria:EBMYCT00000072799
GeneID:13318555 GeneID:888177 GeneID:925980 KEGG:mtc:MT0696
KEGG:mtu:Rv0668 KEGG:mtv:RVBD_0668 PATRIC:18123251
TubercuList:Rv0668 DrugBank:DB01201 Uniprot:P0A674
Length = 1316
Score = 169 (64.5 bits), Expect = 8.1e-31, Sum P(5) = 8.1e-31
Identities = 36/95 (37%), Positives = 56/95 (58%)
Query: 503 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
VL+NR PTLH+ I A +++G K +++H C +NADFDGD+M VH P ++AE
Sbjct: 496 VLLNRAPTLHRLGIQAFEPMLVEG-KAIQLHPLVCEAFNADFDGDQMAVHLPLSAEAQAE 554
Query: 563 AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
A ++ ++N + P++G PL D + LT
Sbjct: 555 ARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLT 589
Score = 142 (55.0 bits), Expect = 8.1e-31, Sum P(5) = 8.1e-31
Identities = 36/82 (43%), Positives = 50/82 (60%)
Query: 344 LQQSVNVLFD-GKNAA-----GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
LQ+SV+ LFD G+ G R + S + LL+ K+G FRQ L+GKRV+Y+ RSVI
Sbjct: 374 LQESVDALFDNGRRGRPVTGPGNRPLKS-LSDLLKGKQGRFRQNLLGKRVDYSGRSVIVV 432
Query: 398 DPYLAVNEIGIPPYFALRLTYP 419
P L +++ G+P AL L P
Sbjct: 433 GPQLKLHQCGLPKLMALELFKP 454
Score = 141 (54.7 bits), Expect = 8.1e-31, Sum P(5) = 8.1e-31
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
L GE VG++A+QS+GEP TQ+T+ TFH G GE ++T G+PR+QE+ K P+
Sbjct: 988 LVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVGE-DITGGLPRVQELFEARVPRGKAPI 1046
Score = 92 (37.4 bits), Expect = 8.1e-31, Sum P(5) = 8.1e-31
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 970 FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
F GL EY+ + R+GL DTA++T+ SGYL R L+ +S D VR+ D
Sbjct: 840 FREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVD------VSQDVIVREHD 890
Score = 48 (22.0 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 550 NVHFPQDEVSRAEAYNIVNANNQYVRPSNG 579
N+ E +RA AY I + +QY P G
Sbjct: 1269 NIAVQPTEEARAAAYTIPSYEDQYYSPDFG 1298
Score = 43 (20.2 bits), Expect = 3.2e-21, Sum P(4) = 3.2e-21
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 370 LLEKKEGLFRQKLMGKRVNYAC 391
L +K+GLF +K+ G ++ C
Sbjct: 39 LKPEKDGLFCEKIFGPTRDWEC 60
Score = 40 (19.1 bits), Expect = 8.1e-31, Sum P(5) = 8.1e-31
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 1 CKTCG---QRQFLCPGHFGHIDLVVPV 24
C+ CG R + GHI+L PV
Sbjct: 75 CERCGVEVTRAKVRRERMGHIELAAPV 101
Score = 40 (19.1 bits), Expect = 9.1e-16, Sum P(4) = 9.1e-16
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 832 EEIGKRVHLEALELEDGAE 850
++I KR L + EDG+E
Sbjct: 1078 DKISKRQRLRVFKHEDGSE 1096
Score = 38 (18.4 bits), Expect = 5.3e-08, Sum P(4) = 5.3e-08
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 842 ALELE-DGAEIDPIKLKSEIEKAMRGGGD 869
A +LE D AE++ K++ + +R GG+
Sbjct: 174 AQKLEADLAELEAEGAKADARRKVRDGGE 202
>TIGR_CMR|CHY_2317 [details] [associations]
symbol:CHY_2317 "DNA-directed RNA polymerase, beta'
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 InterPro:IPR012756
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 KO:K03046 TIGRFAMs:TIGR02388 OMA:DINDKHI
ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 HOGENOM:HOG000218387
RefSeq:YP_361126.1 ProteinModelPortal:Q3A9Q8 SMR:Q3A9Q8
STRING:Q3A9Q8 PRIDE:Q3A9Q8 GeneID:3727667 KEGG:chy:CHY_2317
PATRIC:21277703 BioCyc:CHYD246194:GJCN-2316-MONOMER Uniprot:Q3A9Q8
Length = 1152
Score = 171 (65.3 bits), Expect = 1.5e-30, Sum P(6) = 1.5e-30
Identities = 35/95 (36%), Positives = 59/95 (62%)
Query: 503 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
VL+NR PTLH+ I A +++G + +++H C+ YNADFDGD+M VH P ++AE
Sbjct: 410 VLLNRAPTLHRLGIQAFEPVLVEG-RAIQIHPLVCTAYNADFDGDQMAVHVPLSAEAQAE 468
Query: 563 AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
A ++ +++ + P +G P+ QD ++ + LT
Sbjct: 469 ARLLMLSSHNILNPKDGKPVVVPTQDMVIGSYYLT 503
Score = 135 (52.6 bits), Expect = 1.5e-30, Sum P(6) = 1.5e-30
Identities = 23/49 (46%), Positives = 36/49 (73%)
Query: 1138 SLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
S+ GE VG++A+QS+GEP TQ+T+ TFH G ++T G+PR++E+
Sbjct: 872 SIVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITQGLPRVEEL 920
Score = 129 (50.5 bits), Expect = 1.5e-30, Sum P(6) = 1.5e-30
Identities = 33/82 (40%), Positives = 49/82 (59%)
Query: 344 LQQSVNVLFD-GKNAA-----GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
LQ++V+ L D G+ G R + S + +L+ K+G FRQ L+GKRV+Y+ RSVI
Sbjct: 288 LQEAVDALIDNGRRGRPVTGPGNRPLKS-LSDMLKGKQGRFRQNLLGKRVDYSGRSVIVV 346
Query: 398 DPYLAVNEIGIPPYFALRLTYP 419
P L +++ G+P AL L P
Sbjct: 347 GPELKLHQCGLPKEMALELFKP 368
Score = 93 (37.8 bits), Expect = 1.5e-30, Sum P(6) = 1.5e-30
Identities = 31/86 (36%), Positives = 41/86 (47%)
Query: 970 FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSI 1029
F GL EY+ R+GL DTA++T+ SGYL R L+ + D VR+ D
Sbjct: 728 FREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVD------VCQDVIVREED--- 778
Query: 1030 VQFCYGEDGV---DVHQ-TSFISKFD 1051
C EDG+ DV T I K +
Sbjct: 779 ---CGTEDGIYVTDVKDGTDVIEKLE 801
Score = 53 (23.7 bits), Expect = 1.5e-30, Sum P(6) = 1.5e-30
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 760 VRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKD 819
+ ++DK + + ++L G G LL L +L + G T G+ D+ + K+
Sbjct: 570 INHLVDKKALGKI-VTESYRKL-GYEKTGYLLDGLKKLGFHYATKAGLTIGIVDITVPKE 627
Query: 820 KE 821
K+
Sbjct: 628 KQ 629
Score = 46 (21.3 bits), Expect = 7.6e-30, Sum P(6) = 7.6e-30
Identities = 34/117 (29%), Positives = 51/117 (43%)
Query: 828 LHGSEEIGKRVHLEALELEDG-AEIDPIKLKSEI-EKAMRGGGDAAVAYFDMKMTSQLNK 885
L G +++G +A L G +I K K EI E+A R D V Y +T
Sbjct: 599 LDGLKKLGFHYATKA-GLTIGIVDITVPKEKQEILEEADRMVADIEVKYRRGLITEDERY 657
Query: 886 HTSSSVIN---ELLSEGL---LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
+ N E +++ L L+ + N + +M SGA+G N QQI G + L
Sbjct: 658 QRVVDIWNAATEKVTKKLVETLEASQFNHVYMMAKSGARG---NIQQIRQLAGMRGL 711
Score = 40 (19.1 bits), Expect = 1.1e-08, Sum P(5) = 1.1e-08
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 641 EVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKL 684
+V+P++P +P G + T+ LN + R V+ R +L
Sbjct: 229 DVIPVIPPELRPMVQLDGGRFATSDLNDLYRR----VINRNNRL 268
Score = 39 (18.8 bits), Expect = 1.5e-30, Sum P(6) = 1.5e-30
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 1 CKTCG---QRQFLCPGHFGHIDLVVPV 24
C CG R + GHI+L PV
Sbjct: 75 CDRCGVEVTRSKVRRERLGHIELAAPV 101
Score = 38 (18.4 bits), Expect = 1.1e-21, Sum P(5) = 1.1e-21
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 370 LLEKKEGLFRQKLMGKRVNYAC 391
L +++GLF +++ G ++ C
Sbjct: 39 LKPERDGLFCERIFGPTKDWEC 60
>UNIPROTKB|P0A8T7 [details] [associations]
symbol:rpoC "RNA polymerase, beta' subunit" species:83333
"Escherichia coli K-12" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IDA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005737 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006351 EMBL:U00006
Gene3D:2.40.40.20 InterPro:IPR009010 PDB:3IYD PDBsum:3IYD
GO:GO:0003899 EMBL:V00339 eggNOG:COG0086 PDB:3LU0 PDBsum:3LU0
EMBL:V00340 EMBL:M38293 EMBL:M38303 KO:K03046 HOGENOM:HOG000218386
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 EMBL:M38305
EMBL:M38288 PIR:A00695 RefSeq:NP_418415.1 RefSeq:YP_491473.1
PDB:2AUK PDB:2LMC PDBsum:2AUK PDBsum:2LMC ProteinModelPortal:P0A8T7
SMR:P0A8T7 DIP:DIP-35803N IntAct:P0A8T7 MINT:MINT-1220667
PhosSite:P010445 PaxDb:P0A8T7 PRIDE:P0A8T7
EnsemblBacteria:EBESCT00000001546 EnsemblBacteria:EBESCT00000001547
EnsemblBacteria:EBESCT00000001548 EnsemblBacteria:EBESCT00000018189
GeneID:12933965 GeneID:948487 KEGG:ecj:Y75_p3209 KEGG:eco:b3988
PATRIC:32123497 EchoBASE:EB0888 EcoGene:EG10895
BioCyc:EcoCyc:RPOC-MONOMER BioCyc:ECOL316407:JW3951-MONOMER
BioCyc:MetaCyc:RPOC-MONOMER EvolutionaryTrace:P0A8T7
Genevestigator:P0A8T7 Uniprot:P0A8T7
Length = 1407
Score = 177 (67.4 bits), Expect = 3.5e-30, Sum P(5) = 3.5e-30
Identities = 36/96 (37%), Positives = 59/96 (61%)
Query: 503 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
VL+NR PTLH+ I A +++G K +++H C+ YNADFDGD+M VH P ++ E
Sbjct: 421 VLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479
Query: 563 AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTK 598
A ++ + N + P+NG+P+ QD ++ +T+
Sbjct: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR 515
Score = 146 (56.5 bits), Expect = 3.5e-30, Sum P(5) = 3.5e-30
Identities = 50/154 (32%), Positives = 77/154 (50%)
Query: 274 GKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY-VNQPD 332
G K I + VL P ++ +P GG L +V+ N L + PD
Sbjct: 231 GNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLND-LYRRVINRNNRLKRLLDLAAPD 289
Query: 333 NAKVIVARWMN-LQQSVNVLFD----GKNAAG--QRDMASGICQLLEKKEGLFRQKLMGK 385
+IV LQ++V+ L D G+ G +R + S + +++ K+G FRQ L+GK
Sbjct: 290 ---IIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKS-LADMIKGKQGRFRQNLLGK 345
Query: 386 RVNYACRSVISPDPYLAVNEIGIPPYFALRLTYP 419
RV+Y+ RSVI+ PYL +++ G+P AL L P
Sbjct: 346 RVDYSGRSVITVGPYLRLHQCGLPKKMALELFKP 379
Score = 103 (41.3 bits), Expect = 3.5e-30, Sum P(5) = 3.5e-30
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 1143 GEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
GE +G++A+QS+GEP TQ+T+ TFH+ G
Sbjct: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGG 939
Score = 94 (38.1 bits), Expect = 3.5e-30, Sum P(5) = 3.5e-30
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 966 IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYD 1019
I F GL +Y+ R+GL DTA+KT+ SGYL R L+ + L ++ D
Sbjct: 759 ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812
Score = 59 (25.8 bits), Expect = 3.5e-30, Sum P(5) = 3.5e-30
Identities = 20/96 (20%), Positives = 44/96 (45%)
Query: 844 ELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKP 903
E+ AE + +++ + + + G+ D+ + N S ++++ L +E ++
Sbjct: 652 EIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAA--NDRVSKAMMDNLQTETVINR 709
Query: 904 TGK-------NWISLMTTSGAKGSKVNFQQISSHLG 932
G+ N I +M SGA+GS +Q++ G
Sbjct: 710 DGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRG 745
Score = 41 (19.5 bits), Expect = 8.0e-25, Sum P(5) = 8.0e-25
Identities = 18/70 (25%), Positives = 32/70 (45%)
Query: 987 REGLVDTAVKTSRSGYLQRC-LIK--NLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
+ G D V + + Q C L++ +++ +K+ S D D + CYG D H
Sbjct: 850 KPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSC-DTDFGVCAHCYGRDLARGH- 907
Query: 1044 TSFISKFDAL 1053
I+K +A+
Sbjct: 908 --IINKGEAI 915
Score = 41 (19.5 bits), Expect = 1.3e-05, Sum P(5) = 1.3e-05
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 642 VLPLLPAIWKP-EPLWTGKQVITAVLNHITRGRPPFVVERGGKL 684
VLP+LP +P PL G + T+ LN + R V+ R +L
Sbjct: 241 VLPVLPPDLRPLVPL-DGGRFATSDLNDLYRR----VINRNNRL 279
Score = 37 (18.1 bits), Expect = 3.3e-19, Sum P(5) = 3.3e-19
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 373 KKEGLFRQKLMGKRVNYAC 391
+++GLF ++ G +Y C
Sbjct: 52 ERDGLFCARIFGPVKDYEC 70
>TIGR_CMR|SO_0225 [details] [associations]
symbol:SO_0225 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:NP_715865.1 ProteinModelPortal:Q8EK73
SMR:Q8EK73 PRIDE:Q8EK73 GeneID:1168108 KEGG:son:SO_0225
PATRIC:23520143 Uniprot:Q8EK73
Length = 1405
Score = 178 (67.7 bits), Expect = 1.1e-29, Sum P(6) = 1.1e-29
Identities = 38/105 (36%), Positives = 62/105 (59%)
Query: 503 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
V++NR PTLH+ I A +++G K +++H C+ YNADFDGD+M VH P ++ E
Sbjct: 421 VMLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479
Query: 563 AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDE 607
A ++ + N + P+NG+P+ + QD +V T ++ R E
Sbjct: 480 ARALMMSTNNILSPANGEPVITPSQD-VVLGLYYTSRERINGRGE 523
Score = 139 (54.0 bits), Expect = 1.1e-29, Sum P(6) = 1.1e-29
Identities = 50/154 (32%), Positives = 76/154 (49%)
Query: 274 GKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY-VNQPD 332
G K I + VL P ++ +P GG L +V+ N L + PD
Sbjct: 231 GNKPEWMILKVLPVLPPDLRPLVPLDGGRFATSDLND-LYRRVINRNNRLKRLLDLAAPD 289
Query: 333 NAKVIVARWMN-LQQSVNVLFD----GKNAAG--QRDMASGICQLLEKKEGLFRQKLMGK 385
+IV LQ+SV+ L D G+ G +R + S + +++ K+G FRQ L+GK
Sbjct: 290 ---IIVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKS-LADMIKGKQGRFRQNLLGK 345
Query: 386 RVNYACRSVISPDPYLAVNEIGIPPYFALRLTYP 419
RV+Y+ RSVI+ P L +++ G+P AL L P
Sbjct: 346 RVDYSGRSVITVGPTLRLHQCGLPKKMALELFKP 379
Score = 102 (41.0 bits), Expect = 1.1e-29, Sum P(6) = 1.1e-29
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 1143 GEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
GE +G++A+QS+GEP TQ+T+ TFH+ G
Sbjct: 912 GEAIGVVAAQSIGEPGTQLTMRTFHIGG 939
Score = 95 (38.5 bits), Expect = 1.1e-29, Sum P(6) = 1.1e-29
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 966 IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYD 1019
I+ F GL +Y+ R+GL DTA+KT+ SGYL R L+ + L + D
Sbjct: 759 IVANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVIED 812
Score = 59 (25.8 bits), Expect = 1.1e-29, Sum P(6) = 1.1e-29
Identities = 21/99 (21%), Positives = 45/99 (45%)
Query: 841 EALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGL 900
E L AE + ++++ + + + G+ D+ ++ N+ S +++ L +E +
Sbjct: 649 EKYTLVADAEAEVLEIQEQFQSGLVTAGERYNKVIDIWASA--NEKVSKAMMENLSTETV 706
Query: 901 LKPTGK-------NWISLMTTSGAKGSKVNFQQISSHLG 932
+ G N I +M SGA+GS +Q++ G
Sbjct: 707 INRDGVEEKQASFNSIYMMADSGARGSAAQIRQLAGMRG 745
Score = 44 (20.5 bits), Expect = 1.1e-29, Sum P(6) = 1.1e-29
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 758 DLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVF--LQMHGFTCGVDDLL 815
DLV + K Q + L++T G T++ A ++T F + G + G+DD++
Sbjct: 590 DLVNQNMGKKQISK--LLNTCYRQLGLKD--TVIFADQLMYTGFRYATISGASVGIDDMV 645
Query: 816 ILKDK 820
I +K
Sbjct: 646 IPAEK 650
Score = 42 (19.8 bits), Expect = 2.5e-06, Sum P(6) = 2.5e-06
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 641 EVLPLLPAIWKP-EPLWTGKQVITAVLNHITRGRPPFVVERGGKL 684
+VLP+LP +P PL G + T+ LN + R V+ R +L
Sbjct: 240 KVLPVLPPDLRPLVPL-DGGRFATSDLNDLYRR----VINRNNRL 279
Score = 41 (19.5 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 17/75 (22%), Positives = 33/75 (44%)
Query: 464 ISIGRKLDTSRGAIVQPGKDSDNEFEGKMV--YRHLQDGDVVLVNRQPTLHKPSIMAHVV 521
IS G++ R ++ P D ++E +M+ +R+L + V R + AH +
Sbjct: 1163 ISFGKETKGKRRLVITPA-DGGEQYE-EMIPKWRNLNVFEGEKVERGEVIADGPEAAHDI 1220
Query: 522 RVLKGEKTLRMHYAN 536
L+G + + N
Sbjct: 1221 LRLRGIHNVANYIVN 1235
Score = 40 (19.1 bits), Expect = 7.7e-20, Sum P(6) = 7.7e-20
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 373 KKEGLFRQKLMGKRVNYAC 391
++EGLF ++ G +Y C
Sbjct: 52 EREGLFCARIFGPVKDYEC 70
>TIGR_CMR|ECH_0951 [details] [associations]
symbol:ECH_0951 "DNA-directed RNA polymerase, beta'
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_507739.1 ProteinModelPortal:Q2GFP4
STRING:Q2GFP4 PRIDE:Q2GFP4 GeneID:3927754 KEGG:ech:ECH_0951
PATRIC:20577284 BioCyc:ECHA205920:GJNR-954-MONOMER Uniprot:Q2GFP4
Length = 1410
Score = 184 (69.8 bits), Expect = 1.3e-29, Sum P(6) = 1.3e-29
Identities = 39/105 (37%), Positives = 62/105 (59%)
Query: 503 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
+L+NR PTLH+ I A +++G K +++H CS +NADFDGD+M VH P ++ E
Sbjct: 422 ILLNRAPTLHRLGIQAFDPVLIEG-KAIQLHPLVCSAFNADFDGDQMAVHIPLSLEAQLE 480
Query: 563 AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDE 607
A ++ + N + PSNG P+ +D ++ LT +D + DE
Sbjct: 481 ARILMMSTNNILSPSNGKPIIVPSKDIVLGIYYLTLQDQVQSEDE 525
Score = 138 (53.6 bits), Expect = 1.3e-29, Sum P(6) = 1.3e-29
Identities = 33/82 (40%), Positives = 47/82 (57%)
Query: 344 LQQSVNVLFDG------KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
LQ++V+ LFD N AG + +L+ K+G FRQ L+GKRV+Y+ RSVI
Sbjct: 299 LQEAVDALFDSTRRSYVSNKAGSVGYKKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVV 358
Query: 398 DPYLAVNEIGIPPYFALRLTYP 419
P L +++ G+P AL L P
Sbjct: 359 GPNLKLHQCGLPKKMALELFKP 380
Score = 109 (43.4 bits), Expect = 1.3e-29, Sum P(6) = 1.3e-29
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 966 IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE-CLKISYD 1019
II F GL EY+ R+GL DTA+KT+ SGYL R L+ + C+ + YD
Sbjct: 755 IISNFREGLNVFEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCIVVEYD 809
Score = 104 (41.7 bits), Expect = 1.3e-29, Sum P(6) = 1.3e-29
Identities = 18/28 (64%), Positives = 24/28 (85%)
Query: 1143 GEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
GE VG++A+QSVGEP TQ+T+ TFH+ G
Sbjct: 908 GEAVGVIAAQSVGEPGTQLTMRTFHVGG 935
Score = 44 (20.5 bits), Expect = 1.3e-29, Sum P(6) = 1.3e-29
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 907 NWISLMTTSGAKGSKVNFQQISSHLG 932
N I +M SGA+GS +Q++ G
Sbjct: 716 NSIYMMAHSGARGSASQMKQLAGMRG 741
Score = 39 (18.8 bits), Expect = 1.6e-05, Sum P(5) = 1.6e-05
Identities = 18/61 (29%), Positives = 23/61 (37%)
Query: 341 WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGL-----FRQKLMGKRVNYACRSVI 395
W Q N+ FD N + I L+ + G F KLM YA +S I
Sbjct: 583 WQIFPQHKNLTFDLINQVLTVKEITSIVDLVYRSCGQSETVEFSDKLMSLGFKYASQSGI 642
Query: 396 S 396
S
Sbjct: 643 S 643
Score = 37 (18.1 bits), Expect = 1.3e-29, Sum P(6) = 1.3e-29
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 16 GHIDLVVPV 24
GHI+LV PV
Sbjct: 102 GHIELVSPV 110
>UNIPROTKB|Q9KV29 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
PIR:G82336 RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
PATRIC:20079715 Uniprot:Q9KV29
Length = 1401
Score = 179 (68.1 bits), Expect = 1.3e-29, Sum P(7) = 1.3e-29
Identities = 36/97 (37%), Positives = 60/97 (61%)
Query: 503 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
VL+NR PTLH+ I A +++G K +++H C+ YNADFDGD+M VH P ++ E
Sbjct: 421 VLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479
Query: 563 AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
A ++ + N + P++GDP+ QD ++ +T++
Sbjct: 480 ARTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRE 516
Score = 154 (59.3 bits), Expect = 1.3e-29, Sum P(7) = 1.3e-29
Identities = 61/204 (29%), Positives = 99/204 (48%)
Query: 230 GFKKQKDLFSGPLLPSDVKDIIEKL--WENEFELCSFISDMQQ-QGF---GKKAGHSIFF 283
G + KDL + LP++ + + E+L +E + ++ + F G K I
Sbjct: 181 GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240
Query: 284 LGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY-VNQPDNAKVIVARWM 342
+ VL P ++ +P GG L +V+ N L + PD +IV
Sbjct: 241 VLPVLPPDLRPLVPLDGGRFATSDLND-LYRRVINRNNRLKRLLELAAPD---IIVRNEK 296
Query: 343 N-LQQSVNVLFD----GKNAAG--QRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
LQ+SV+ L D G+ G +R + S + +++ K+G FRQ L+GKRV+Y+ RSVI
Sbjct: 297 RMLQESVDALLDNGRRGRAITGSNKRPLKS-LADMIKGKQGRFRQNLLGKRVDYSGRSVI 355
Query: 396 SPDPYLAVNEIGIPPYFALRLTYP 419
+ PYL +++ G+P AL L P
Sbjct: 356 TVGPYLRLHQCGLPKKMALELFKP 379
Score = 107 (42.7 bits), Expect = 1.3e-29, Sum P(7) = 1.3e-29
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
L GE VG++A+QS+GEP TQ+T+ TFH+ G
Sbjct: 908 LVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGG 939
Score = 90 (36.7 bits), Expect = 1.3e-29, Sum P(7) = 1.3e-29
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 966 IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1008
I F GL +Y+ R+GL DTA+KT+ SGYL R L+
Sbjct: 759 ITANFKEGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLV 801
Score = 53 (23.7 bits), Expect = 1.3e-29, Sum P(7) = 1.3e-29
Identities = 19/91 (20%), Positives = 42/91 (46%)
Query: 849 AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK-- 906
AE + +++ + + + G+ D+ ++ N + +++ L SE ++ G+
Sbjct: 657 AEEEVREIQEQFQSGLVTAGERYNKVIDIWAST--NDRVAKAMMENLSSEQVINRQGEQE 714
Query: 907 -----NWISLMTTSGAKGSKVNFQQISSHLG 932
N I +M SGA+GS +Q++ G
Sbjct: 715 KQESFNSIYMMADSGARGSAAQIRQLAGMRG 745
Score = 45 (20.9 bits), Expect = 6.8e-19, Sum P(7) = 6.8e-19
Identities = 23/82 (28%), Positives = 35/82 (42%)
Query: 179 GETFS---GGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAAR-----RHQKGSGAVPSG 230
G+ F+ G E KDL AS D+ A E T R R + V SG
Sbjct: 173 GDEFTAKMGAEAIKDLLASMDLPA-EAEQMREELDTTNSETKRKKLTKRLKLVEAFVASG 231
Query: 231 FKKQKDLFSG-PLLPSDVKDII 251
K + + + P+LP D++ ++
Sbjct: 232 NKPEWMILTVLPVLPPDLRPLV 253
Score = 41 (19.5 bits), Expect = 0.00010, Sum P(7) = 0.00010
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 642 VLPLLPAIWKP-EPLWTGKQVITAVLNHITRGRPPFVVERGGKL 684
VLP+LP +P PL G + T+ LN + R V+ R +L
Sbjct: 241 VLPVLPPDLRPLVPL-DGGRFATSDLNDLYRR----VINRNNRL 279
Score = 37 (18.1 bits), Expect = 1.3e-29, Sum P(7) = 1.3e-29
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 1172 GEMNVTLGIPRLQEILTIASKDIKTPVI 1199
G ++T G+PR+ ++ A K K P I
Sbjct: 1130 GNKDITGGLPRVADLFE-ARKP-KEPAI 1155
Score = 37 (18.1 bits), Expect = 1.3e-29, Sum P(7) = 1.3e-29
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 789 TLLSALSRLFTVFLQ--MHGFTCGVDDLLILKDKERE 823
T++ A ++T F + G + G+DD+++ K E
Sbjct: 617 TVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTE 653
Score = 37 (18.1 bits), Expect = 4.1e-18, Sum P(7) = 4.1e-18
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 373 KKEGLFRQKLMGKRVNYAC 391
+++GLF ++ G +Y C
Sbjct: 52 ERDGLFCARIFGPVKDYEC 70
>TIGR_CMR|VC_0329 [details] [associations]
symbol:VC_0329 "DNA-directed RNA polymerase, beta' subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G82336
RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
PATRIC:20079715 Uniprot:Q9KV29
Length = 1401
Score = 179 (68.1 bits), Expect = 1.3e-29, Sum P(7) = 1.3e-29
Identities = 36/97 (37%), Positives = 60/97 (61%)
Query: 503 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
VL+NR PTLH+ I A +++G K +++H C+ YNADFDGD+M VH P ++ E
Sbjct: 421 VLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479
Query: 563 AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
A ++ + N + P++GDP+ QD ++ +T++
Sbjct: 480 ARTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRE 516
Score = 154 (59.3 bits), Expect = 1.3e-29, Sum P(7) = 1.3e-29
Identities = 61/204 (29%), Positives = 99/204 (48%)
Query: 230 GFKKQKDLFSGPLLPSDVKDIIEKL--WENEFELCSFISDMQQ-QGF---GKKAGHSIFF 283
G + KDL + LP++ + + E+L +E + ++ + F G K I
Sbjct: 181 GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240
Query: 284 LGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY-VNQPDNAKVIVARWM 342
+ VL P ++ +P GG L +V+ N L + PD +IV
Sbjct: 241 VLPVLPPDLRPLVPLDGGRFATSDLND-LYRRVINRNNRLKRLLELAAPD---IIVRNEK 296
Query: 343 N-LQQSVNVLFD----GKNAAG--QRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
LQ+SV+ L D G+ G +R + S + +++ K+G FRQ L+GKRV+Y+ RSVI
Sbjct: 297 RMLQESVDALLDNGRRGRAITGSNKRPLKS-LADMIKGKQGRFRQNLLGKRVDYSGRSVI 355
Query: 396 SPDPYLAVNEIGIPPYFALRLTYP 419
+ PYL +++ G+P AL L P
Sbjct: 356 TVGPYLRLHQCGLPKKMALELFKP 379
Score = 107 (42.7 bits), Expect = 1.3e-29, Sum P(7) = 1.3e-29
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
L GE VG++A+QS+GEP TQ+T+ TFH+ G
Sbjct: 908 LVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGG 939
Score = 90 (36.7 bits), Expect = 1.3e-29, Sum P(7) = 1.3e-29
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 966 IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1008
I F GL +Y+ R+GL DTA+KT+ SGYL R L+
Sbjct: 759 ITANFKEGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLV 801
Score = 53 (23.7 bits), Expect = 1.3e-29, Sum P(7) = 1.3e-29
Identities = 19/91 (20%), Positives = 42/91 (46%)
Query: 849 AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK-- 906
AE + +++ + + + G+ D+ ++ N + +++ L SE ++ G+
Sbjct: 657 AEEEVREIQEQFQSGLVTAGERYNKVIDIWAST--NDRVAKAMMENLSSEQVINRQGEQE 714
Query: 907 -----NWISLMTTSGAKGSKVNFQQISSHLG 932
N I +M SGA+GS +Q++ G
Sbjct: 715 KQESFNSIYMMADSGARGSAAQIRQLAGMRG 745
Score = 45 (20.9 bits), Expect = 6.8e-19, Sum P(7) = 6.8e-19
Identities = 23/82 (28%), Positives = 35/82 (42%)
Query: 179 GETFS---GGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAAR-----RHQKGSGAVPSG 230
G+ F+ G E KDL AS D+ A E T R R + V SG
Sbjct: 173 GDEFTAKMGAEAIKDLLASMDLPA-EAEQMREELDTTNSETKRKKLTKRLKLVEAFVASG 231
Query: 231 FKKQKDLFSG-PLLPSDVKDII 251
K + + + P+LP D++ ++
Sbjct: 232 NKPEWMILTVLPVLPPDLRPLV 253
Score = 41 (19.5 bits), Expect = 0.00010, Sum P(7) = 0.00010
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 642 VLPLLPAIWKP-EPLWTGKQVITAVLNHITRGRPPFVVERGGKL 684
VLP+LP +P PL G + T+ LN + R V+ R +L
Sbjct: 241 VLPVLPPDLRPLVPL-DGGRFATSDLNDLYRR----VINRNNRL 279
Score = 37 (18.1 bits), Expect = 1.3e-29, Sum P(7) = 1.3e-29
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 1172 GEMNVTLGIPRLQEILTIASKDIKTPVI 1199
G ++T G+PR+ ++ A K K P I
Sbjct: 1130 GNKDITGGLPRVADLFE-ARKP-KEPAI 1155
Score = 37 (18.1 bits), Expect = 1.3e-29, Sum P(7) = 1.3e-29
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 789 TLLSALSRLFTVFLQ--MHGFTCGVDDLLILKDKERE 823
T++ A ++T F + G + G+DD+++ K E
Sbjct: 617 TVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTE 653
Score = 37 (18.1 bits), Expect = 4.1e-18, Sum P(7) = 4.1e-18
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 373 KKEGLFRQKLMGKRVNYAC 391
+++GLF ++ G +Y C
Sbjct: 52 ERDGLFCARIFGPVKDYEC 70
>TIGR_CMR|CPS_4768 [details] [associations]
symbol:CPS_4768 "DNA-directed RNA polymerase, beta'
subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_271412.1 ProteinModelPortal:Q47UW0
SMR:Q47UW0 STRING:Q47UW0 PRIDE:Q47UW0 GeneID:3519900
KEGG:cps:CPS_4768 PATRIC:21472353
BioCyc:CPSY167879:GI48-4774-MONOMER Uniprot:Q47UW0
Length = 1406
Score = 178 (67.7 bits), Expect = 2.7e-29, Sum P(6) = 2.7e-29
Identities = 36/96 (37%), Positives = 58/96 (60%)
Query: 503 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
V++NR PTLH+ I A +++G K + +H C+ YNADFDGD+M VH P ++ E
Sbjct: 421 VMLNRAPTLHRLGIQAFEPVLIEG-KAIHLHPLVCAAYNADFDGDQMAVHVPLTIEAQME 479
Query: 563 AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTK 598
A ++ + N + P+NG+P+ QD ++ LT+
Sbjct: 480 ARTLMMSTNNVLAPANGEPIIVPSQDVVLGLYYLTR 515
Score = 137 (53.3 bits), Expect = 2.7e-29, Sum P(6) = 2.7e-29
Identities = 49/154 (31%), Positives = 76/154 (49%)
Query: 274 GKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY-VNQPD 332
G K I + +L P ++ +P GG L +V+ N L + PD
Sbjct: 231 GNKPEWMIMNVLPILPPDLRPLVPLDGGRFATSDLND-LYRRVINRNNRLKRLLDLVAPD 289
Query: 333 NAKVIVARWMN-LQQSVNVLFD----GKNAAG--QRDMASGICQLLEKKEGLFRQKLMGK 385
+IV LQ+SV+ L D G+ G +R + S + +++ K+G FRQ L+GK
Sbjct: 290 ---IIVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKS-LADMIKGKQGRFRQNLLGK 345
Query: 386 RVNYACRSVISPDPYLAVNEIGIPPYFALRLTYP 419
RV+Y+ RSVI+ P L +++ G+P AL L P
Sbjct: 346 RVDYSGRSVITVGPTLKLHQCGLPKKMALELFKP 379
Score = 102 (41.0 bits), Expect = 2.7e-29, Sum P(6) = 2.7e-29
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 1143 GEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
GE +G++A+QS+GEP TQ+T+ TFH+ G
Sbjct: 912 GEAIGVVAAQSIGEPGTQLTMRTFHIGG 939
Score = 91 (37.1 bits), Expect = 2.7e-29, Sum P(6) = 2.7e-29
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 970 FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIS-YDYSVRD 1024
F GL +Y+ R+GL DTA+KT+ SGYL R L+ + L ++ +D D
Sbjct: 763 FREGLTVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTNHDCGTHD 818
Score = 62 (26.9 bits), Expect = 2.7e-29, Sum P(6) = 2.7e-29
Identities = 21/95 (22%), Positives = 47/95 (49%)
Query: 845 LEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPT 904
+ED +E + +++++ ++ + G+ D+ S N+ S ++++ L E ++
Sbjct: 654 VED-SEAEVAEIQAQFDQGLVTAGEKYNKVIDI--WSSANEKVSKAMMDNLSKEMVMNRD 710
Query: 905 GK-------NWISLMTTSGAKGSKVNFQQISSHLG 932
G+ N I +M SGA+GS +Q++ G
Sbjct: 711 GEMEEQDSFNSIFMMADSGARGSAAQIRQLAGMRG 745
Score = 43 (20.2 bits), Expect = 2.7e-29, Sum P(6) = 2.7e-29
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 116 EWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPT 154
E+ +L AEA LALLQ + ++ + + + P I T
Sbjct: 175 EFDALMGAEAVLALLQQIDLDG-EVAQMREELPEIGSET 212
Score = 42 (19.8 bits), Expect = 3.7e-06, Sum P(5) = 3.7e-06
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 642 VLPLLPAIWKP-EPLWTGKQVITAVLNHITRGRPPFVVERGGKL 684
VLP+LP +P PL G + T+ LN + R V+ R +L
Sbjct: 241 VLPILPPDLRPLVPL-DGGRFATSDLNDLYRR----VINRNNRL 279
Score = 37 (18.1 bits), Expect = 3.2e-19, Sum P(5) = 3.2e-19
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 373 KKEGLFRQKLMGKRVNYAC 391
+++GLF ++ G +Y C
Sbjct: 52 ERDGLFCARIFGPVKDYEC 70
>TIGR_CMR|CBU_0232 [details] [associations]
symbol:CBU_0232 "DNA-directed RNA polymerase beta'
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:NP_819276.1 ProteinModelPortal:Q83ET0
SMR:Q83ET0 PRIDE:Q83ET0 GeneID:1208113 KEGG:cbu:CBU_0232
PATRIC:17929155 BioCyc:CBUR227377:GJ7S-238-MONOMER Uniprot:Q83ET0
Length = 1414
Score = 180 (68.4 bits), Expect = 9.0e-29, Sum P(5) = 9.0e-29
Identities = 40/115 (34%), Positives = 68/115 (59%)
Query: 487 EFEGKMVYRHLQD---GDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNAD 543
E EG V+ L++ +L+NR PTLH+ I A +++G K +++H C+ YNAD
Sbjct: 402 ENEGPEVWDILEEVIREHPILLNRAPTLHRLGIQAFEPVLVEG-KAIQLHPLVCTAYNAD 460
Query: 544 FDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTK 598
FDGD+M VH P ++ EA +++ + N + P+NG+P+ QD ++ +T+
Sbjct: 461 FDGDQMAVHVPLTLEAQLEARSLMMSTNNVLHPANGEPIIVPSQDVVLGLYYITR 515
Score = 142 (55.0 bits), Expect = 9.0e-29, Sum P(5) = 9.0e-29
Identities = 49/153 (32%), Positives = 72/153 (47%)
Query: 274 GKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY-VNQPD 332
G K I + VL P ++ +P GG L +V+ N L +N PD
Sbjct: 231 GNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLND-LYRRVINRNNRLKRLLDLNAPD 289
Query: 333 NAKVIVARWMN-LQQSVNVLFD----GKNAAGQ-RDMASGICQLLEKKEGLFRQKLMGKR 386
+IV LQ++V+ L D G+ G R + +++ K G FRQ L+GKR
Sbjct: 290 ---IIVRNEKRMLQEAVDALLDNGRRGRAILGSNRRQLKSLADMIKGKSGRFRQNLLGKR 346
Query: 387 VNYACRSVISPDPYLAVNEIGIPPYFALRLTYP 419
V+Y+ RSVI P L +++ G+P AL L P
Sbjct: 347 VDYSGRSVIVVGPTLKLHQAGLPKKMALELFKP 379
Score = 102 (41.0 bits), Expect = 9.0e-29, Sum P(5) = 9.0e-29
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 1143 GEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
GE +G++A+QS+GEP TQ+T+ TFH+ G
Sbjct: 912 GEAIGVVAAQSIGEPGTQLTMRTFHIGG 939
Score = 91 (37.1 bits), Expect = 9.0e-29, Sum P(5) = 9.0e-29
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 966 IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDA 1025
I F GL +Y+ R+GL DTA+KT+ SGYL R L+ + L ++ +A
Sbjct: 759 ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEHDCGTEA 818
Query: 1026 DGSIVQFCYGEDGVD 1040
++ G D V+
Sbjct: 819 SIEMMPHIEGGDVVE 833
Score = 50 (22.7 bits), Expect = 9.0e-29, Sum P(5) = 9.0e-29
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 859 EIEKAMRGG----GDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK-------N 907
EIEK G G+ D+ S+ N + +++ ++ E + GK N
Sbjct: 663 EIEKQYASGLVTHGERRNKVIDI--WSRTNDQVAKAMMEKIAVEKVKDAEGKEVAQSSFN 720
Query: 908 WISLMTTSGAKGSKVNFQQISSHLG 932
I +M+ SGA+GS +Q++ G
Sbjct: 721 SIYMMSDSGARGSAAQTRQLAGMRG 745
Score = 43 (20.2 bits), Expect = 8.1e-19, Sum P(5) = 8.1e-19
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 373 KKEGLFRQKLMGKRVNYAC 391
++EGLF K+ G +Y C
Sbjct: 52 EREGLFCAKIFGPIKDYEC 70
Score = 41 (19.5 bits), Expect = 6.3e-05, Sum P(5) = 6.3e-05
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 642 VLPLLPAIWKP-EPLWTGKQVITAVLNHITRGRPPFVVERGGKL 684
VLP+LP +P PL G + T+ LN + R V+ R +L
Sbjct: 241 VLPVLPPDLRPLVPL-DGGRFATSDLNDLYRR----VINRNNRL 279
Score = 37 (18.1 bits), Expect = 9.5e-23, Sum P(4) = 9.5e-23
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 1022 VRDADGSIVQFCYGEDGVDVH 1042
+R AD V Y D VD+H
Sbjct: 525 MRFADAQEVVRAYENDQVDLH 545
>TIGR_CMR|CJE_0529 [details] [associations]
symbol:CJE_0529 "DNA-directed RNA polymerase, beta'
subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:CP000025 GenomeReviews:CP000025_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
RefSeq:YP_178547.1 ProteinModelPortal:Q5HVY8 SMR:Q5HVY8
STRING:Q5HVY8 GeneID:3231290 KEGG:cjr:CJE0529 PATRIC:20042780
OMA:VIAEWDP BioCyc:CJEJ195099:GJC0-544-MONOMER Uniprot:Q5HVY8
Length = 1517
Score = 155 (59.6 bits), Expect = 1.1e-28, Sum P(7) = 1.1e-28
Identities = 37/99 (37%), Positives = 59/99 (59%)
Query: 500 GDVVLVNRQPTLHKPSIMA-HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
G V++NR PTLHK SI A H V V +G K +++H C+ +NADFDGD+M VH P +
Sbjct: 440 GHPVMLNRAPTLHKLSIQAFHPVLV-EG-KAIQLHPLVCAAFNADFDGDQMAVHVPLSQE 497
Query: 559 SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
+ AE ++ ++ + P++G + QD ++ L+
Sbjct: 498 AIAECKVLMLSSMNILLPASGKSVTVPSQDMVLGIYYLS 536
Score = 141 (54.7 bits), Expect = 1.1e-28, Sum P(7) = 1.1e-28
Identities = 44/140 (31%), Positives = 75/140 (53%)
Query: 287 VLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMN-LQ 345
VL P ++ + GG + L +V+ N L + + D ++I+ LQ
Sbjct: 266 VLPPDLRPLVALDGGKFAVSDVND-LYRRVINRNTRLKK--LMELDAPEIIIRNEKRMLQ 322
Query: 346 QSVNVLFD-GKNA-----AGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDP 399
++V+ LFD G+ A A +R + S + ++++ K+G FRQ L+GKRV+++ RSVI P
Sbjct: 323 EAVDALFDNGRRANAVKGANKRPLKS-LSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGP 381
Query: 400 YLAVNEIGIPPYFALRLTYP 419
L +++ G+P AL L P
Sbjct: 382 KLRMDQCGLPKKMALELFKP 401
Score = 112 (44.5 bits), Expect = 1.1e-28, Sum P(7) = 1.1e-28
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
L +PGE VG++++QS+GEP TQ+TL TFH G
Sbjct: 906 LVKPGEAVGIISAQSIGEPGTQLTLRTFHSGG 937
Score = 104 (41.7 bits), Expect = 1.1e-28, Sum P(7) = 1.1e-28
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 966 IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYD 1019
II F GL EY+ R+GL DTA+KT+ +GYL R LI + +KI+ +
Sbjct: 757 IISNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKLIDVAQNVKITIE 810
Score = 54 (24.1 bits), Expect = 1.1e-28, Sum P(7) = 1.1e-28
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 893 NELLSEGLLK-----PTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
N +LS+ ++K G N I +M SGA+GS Q+++ G
Sbjct: 699 NNVLSKEMMKLVEKDKEGFNSIYMMADSGARGSAAQISQLAAMRG 743
Score = 45 (20.9 bits), Expect = 4.4e-19, Sum P(6) = 4.4e-19
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 412 FALRLTYPERVTPWNVVKLRD-SIINGAEIHP 442
F LRL PE++ W+ +++ IN + P
Sbjct: 21 FQLRLASPEKIKSWSYGEVKKPETINYRTLKP 52
Score = 44 (20.5 bits), Expect = 1.1e-28, Sum P(7) = 1.1e-28
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 763 VIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKER 822
V+ K A LV V + G + L L L + G + + D+++ DK++
Sbjct: 604 VLKKKDIA--ALVDYVYKQGGLEITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQK 661
Score = 43 (20.2 bits), Expect = 1.8e-14, Sum P(5) = 1.8e-14
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 847 DGAEIDPIKLKSEIEKAMRGGGDAAVA 873
+G + K + E E+ +R GG+ A+A
Sbjct: 1418 EGDLVSRRKFREENERIIRMGGEPAIA 1444
Score = 42 (19.8 bits), Expect = 1.1e-28, Sum P(7) = 1.1e-28
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 1 CKTCG---QRQFLCPGHFGHIDLVVPV 24
C+ CG + GHI+LV PV
Sbjct: 86 CEKCGVEVANSKVRRSRMGHIELVTPV 112
Score = 40 (19.1 bits), Expect = 1.4e-18, Sum P(6) = 1.4e-18
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 370 LLEKKEGLFRQKLMGKRVNYAC 391
L +++GLF K+ G +Y C
Sbjct: 50 LKPERDGLFCAKIFGPIRDYEC 71
Score = 39 (18.8 bits), Expect = 2.3e-07, Sum P(5) = 2.3e-07
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 815 LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRG 866
+I+++++R + + + G+R + A++ GA P+K SEI K +G
Sbjct: 312 IIIRNEKRMLQEAVDALFDNGRRAN--AVK---GANKRPLKSLSEIIKGKQG 358
>TIGR_CMR|APH_1023 [details] [associations]
symbol:APH_1023 "DNA-directed RNA polymerase, beta'
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 RefSeq:YP_505582.1 ProteinModelPortal:Q2GJ69
STRING:Q2GJ69 PRIDE:Q2GJ69 GeneID:3930013 KEGG:aph:APH_1023
PATRIC:20950796 HOGENOM:HOG000218386 OMA:DINDKHI
ProtClustDB:PRK00566 BioCyc:APHA212042:GHPM-1030-MONOMER
TIGRFAMs:TIGR02386 Uniprot:Q2GJ69
Length = 1409
Score = 172 (65.6 bits), Expect = 1.5e-28, Sum P(6) = 1.5e-28
Identities = 35/95 (36%), Positives = 58/95 (61%)
Query: 503 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
+L+NR PTLH+ + A +++G K +++H CS +NADFDGD+M VH P + ++ E
Sbjct: 422 ILLNRAPTLHRLGLQAFDPVLIEG-KAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAQLE 480
Query: 563 AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
A ++ + N + PSNG P+ +D ++ LT
Sbjct: 481 ARVLMMSTNNILSPSNGRPIIVPSKDIVLGIYYLT 515
Score = 131 (51.2 bits), Expect = 1.5e-28, Sum P(6) = 1.5e-28
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 344 LQQSVNVLFDGKNAA------GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
LQ++V+ LFD + G + +L+ K+G FRQ L+GKRV+Y+ RSVI
Sbjct: 299 LQEAVDALFDSSRRSYVSSRVGSMGYKKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVV 358
Query: 398 DPYLAVNEIGIPPYFALRLTYP 419
P L +++ G+P AL L P
Sbjct: 359 GPSLKLHQCGLPKKMALELFKP 380
Score = 110 (43.8 bits), Expect = 1.5e-28, Sum P(6) = 1.5e-28
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
L GE VG++A+QSVGEP TQ+T+ TFH+ G V + L ++ K + + V
Sbjct: 899 LVSIGEAVGVIAAQSVGEPGTQLTMRTFHVGGTAMRGVE--VSNLIALMDATVKLVNSNV 956
Query: 1199 IT 1200
+T
Sbjct: 957 VT 958
Score = 104 (41.7 bits), Expect = 1.5e-28, Sum P(6) = 1.5e-28
Identities = 29/77 (37%), Positives = 38/77 (49%)
Query: 966 IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE-CLKISYDYSVRD 1024
II F GL EY+ R+GL DTA+KT+ SGYL R L+ + C + +D
Sbjct: 750 IISNFREGLSVFEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCTVVEHDCGT-- 807
Query: 1025 ADGSIVQFCYGEDGVDV 1041
G +V E GV V
Sbjct: 808 -SGGVVARAVIEGGVVV 823
Score = 52 (23.4 bits), Expect = 1.5e-28, Sum P(6) = 1.5e-28
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 878 KMTSQLNKHTSSSVINELLSEGLLKPTGK-NWISLMTTSGAKGSKVNFQQISSHLG 932
K+ + +K T + + + L GK N I +M SGA+GS +Q++ G
Sbjct: 681 KVVDEWSKCTDLIARDMMKAISLCDEKGKYNSIYMMANSGARGSASQMKQLAGMRG 736
Score = 37 (18.1 bits), Expect = 1.5e-28, Sum P(6) = 1.5e-28
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 16 GHIDLVVPV 24
GHI+LV PV
Sbjct: 102 GHIELVSPV 110
>TIGR_CMR|DET_0604 [details] [associations]
symbol:DET_0604 "DNA-directed RNA polymerase, beta'
subunit" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 EMBL:CP000027 GenomeReviews:CP000027_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
HOGENOM:HOG000218387 RefSeq:YP_181346.1 ProteinModelPortal:Q3Z8V3
SMR:Q3Z8V3 STRING:Q3Z8V3 PRIDE:Q3Z8V3 GeneID:3230059
KEGG:det:DET0604 PATRIC:21608279 BioCyc:DETH243164:GJNF-605-MONOMER
Uniprot:Q3Z8V3
Length = 1295
Score = 165 (63.1 bits), Expect = 1.9e-28, Sum P(6) = 1.9e-28
Identities = 37/95 (38%), Positives = 55/95 (57%)
Query: 503 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
V++NR PTLH+ SI A ++ G LR+H CS +NADFDGD+M VH P + + E
Sbjct: 477 VMLNRAPTLHRLSIQAFEPVLIDGS-ALRLHPLVCSAFNADFDGDQMAVHVPLSKAAVKE 535
Query: 563 AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
A + + + + PS+G+P+ S D + LT
Sbjct: 536 ARETMLSIHNMMLPSSGEPVVSPSLDMVFGCYYLT 570
Score = 136 (52.9 bits), Expect = 1.9e-28, Sum P(6) = 1.9e-28
Identities = 35/81 (43%), Positives = 48/81 (59%)
Query: 344 LQQSVNVLFD----GKNAAGQRD-MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
LQ++V+ L D GK+ A D A + LL K+G FRQ L+GKRV+Y+ RSVI
Sbjct: 355 LQEAVDSLIDNGRRGKSVAVNGDHKAKSLSDLLRGKQGRFRQNLLGKRVDYSGRSVIVVG 414
Query: 399 PYLAVNEIGIPPYFALRLTYP 419
P L +++ G+P AL L P
Sbjct: 415 PSLKLSQCGLPRRMALELFKP 435
Score = 125 (49.1 bits), Expect = 1.9e-28, Sum P(6) = 1.9e-28
Identities = 21/41 (51%), Positives = 33/41 (80%)
Query: 1146 VGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
VG++A+QS+GEP TQ+TL TFH G +++T G+PR++E+
Sbjct: 941 VGIIAAQSIGEPGTQLTLRTFHTGGVVGVDITTGLPRVEEL 981
Score = 88 (36.0 bits), Expect = 1.9e-28, Sum P(6) = 1.9e-28
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 973 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1008
GL EY+ R+GL DTA++TS SGYL R LI
Sbjct: 793 GLTTLEYFISTHGARKGLADTALRTSGSGYLTRRLI 828
Score = 51 (23.0 bits), Expect = 1.9e-28, Sum P(6) = 1.9e-28
Identities = 21/91 (23%), Positives = 34/91 (37%)
Query: 5 GQRQFLCPGHFGHIDLV--VPVYNPXXXXXXXXXXKRICFFCHHFKASRREV--EKCVRK 60
G + CP GHI +P +RI ++ H + EK ++
Sbjct: 93 GHIELACP--VGHIWFTRGIPSRVGLLLNLSTRSLERIIYYSHFIITGVNDEAREKAIKD 150
Query: 61 LELIIKGDIIAAKSLDLDLPSESSNPEDSDV 91
LE +I +A K ++D ED+ V
Sbjct: 151 LE-VISSQRVADKGSEVDTRVAQMEAEDATV 180
Score = 42 (19.8 bits), Expect = 7.8e-07, Sum P(5) = 7.8e-07
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 642 VLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKL 684
VLP+LP +P G + T+ LN + R V+ R +L
Sbjct: 297 VLPVLPPDLRPMVQLDGGRFATSDLNDLYRR----VINRNNRL 335
Score = 40 (19.1 bits), Expect = 1.2e-06, Sum P(5) = 1.2e-06
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 215 TAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIE 252
T R KG G + S F++ K + ++ D++ II+
Sbjct: 570 TTTRPGAKGEGKIFSDFEEAKHYYEMGII--DLRAIIK 605
Score = 38 (18.4 bits), Expect = 1.9e-28, Sum P(6) = 1.9e-28
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 909 ISLMTTSGAKGSKVNFQQISSHLG 932
+ +M SGAKG+ +Q++ G
Sbjct: 749 VYMMANSGAKGNISQIRQMAGLRG 772
Score = 37 (18.1 bits), Expect = 1.2e-17, Sum P(5) = 1.2e-17
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 370 LLEKKEGLFRQKLMGKRVNYAC 391
L +++GLF +++ G ++ C
Sbjct: 39 LKPERDGLFCERIFGPIKDFEC 60
>TIGR_CMR|SPO_3507 [details] [associations]
symbol:SPO_3507 "DNA-directed RNA polymerase, beta'
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_168702.1 ProteinModelPortal:Q5LMQ6
SMR:Q5LMQ6 PRIDE:Q5LMQ6 GeneID:3196349 KEGG:sil:SPO3507
PATRIC:23380483 Uniprot:Q5LMQ6
Length = 1413
Score = 174 (66.3 bits), Expect = 6.0e-28, Sum P(6) = 6.0e-28
Identities = 38/95 (40%), Positives = 57/95 (60%)
Query: 503 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
VL+NR PTLH+ I A +++G K +++H CS +NADFDGD+M VH P ++ E
Sbjct: 424 VLLNRAPTLHRLGIQAFEPILIEG-KAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE 482
Query: 563 AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
A ++ + N + P+NG P+ QD I+ LT
Sbjct: 483 ARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYLT 517
Score = 140 (54.3 bits), Expect = 6.0e-28, Sum P(6) = 6.0e-28
Identities = 47/141 (33%), Positives = 72/141 (51%)
Query: 287 VLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY-VNQPDNAKVIVARWMN-L 344
V+ P ++ +P GG L +V+ N L + PD +IV L
Sbjct: 247 VIPPELRPLVPLDGGRFATSDLND-LYRRVINRNNRLKRLIELRAPD---IIVRNEKRML 302
Query: 345 QQSVNVLFD-GKNA-----AGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
Q+SV+ LFD G+ A +R + S + +L+ K+G FRQ L+GKRV+++ RSVI
Sbjct: 303 QESVDALFDNGRRGRVITGANKRPLKS-LSDMLKGKQGRFRQNLLGKRVDFSGRSVIVTG 361
Query: 399 PYLAVNEIGIPPYFALRLTYP 419
P L +++ G+P AL L P
Sbjct: 362 PELKLHQCGLPKKMALELFKP 382
Score = 107 (42.7 bits), Expect = 6.0e-28, Sum P(6) = 6.0e-28
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 1138 SLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
++ GE VG++A+QS+GEP TQ+T+ TFH+ G
Sbjct: 904 TMVNQGEAVGIIAAQSIGEPGTQLTMRTFHIGG 936
Score = 96 (38.9 bits), Expect = 6.0e-28, Sum P(6) = 6.0e-28
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 966 IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE-CLKISYD 1019
II F GL EY+ R+GL DTA+KT+ SGYL R L+ + C+ +D
Sbjct: 756 IISNFKEGLTVLEYFNSTHGARKGLSDTALKTANSGYLTRRLVDVAQDCIVREHD 810
Score = 48 (22.0 bits), Expect = 4.6e-22, Sum P(6) = 4.6e-22
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 1074 TFVMGRNQEMIYKKCSGQLDASN--AYIMELPDALKDNAE-KFADK 1116
+ VMGRN +++ K G+ AS Y +L +KD A+ K DK
Sbjct: 969 SLVMGRNMKLLIKDAQGEERASFKLGYGSKL--FVKDGAQIKRGDK 1012
Score = 43 (20.2 bits), Expect = 6.0e-28, Sum P(6) = 6.0e-28
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 907 NWISLMTTSGAKGSKVNFQQISSHLG 932
N + +M SGA+GS +Q+ G
Sbjct: 717 NSVYMMAHSGARGSVTQMKQLGGMRG 742
Score = 40 (19.1 bits), Expect = 6.0e-28, Sum P(6) = 6.0e-28
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 1 CKTCGQR---QFLCPGHFGHIDLVVPV 24
C+ CG Q + GHI+L PV
Sbjct: 87 CEKCGVEVTLQKVRRERMGHIELAAPV 113
Score = 37 (18.1 bits), Expect = 6.9e-18, Sum P(5) = 6.9e-18
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 373 KKEGLFRQKLMGKRVNYAC 391
+++GLF ++ G +Y C
Sbjct: 54 ERDGLFCARIFGPIKDYEC 72
Score = 37 (18.1 bits), Expect = 0.00014, Sum P(5) = 0.00014
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 642 VLPLLPAIWKP-EPLWTGKQVITAVLNHITRGRPPFVVERGGKL 684
V+P++P +P PL G + T+ LN + R V+ R +L
Sbjct: 244 VIPVIPPELRPLVPL-DGGRFATSDLNDLYRR----VINRNNRL 282
>TIGR_CMR|NSE_0677 [details] [associations]
symbol:NSE_0677 "DNA-directed RNA polymerase, beta'
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 TIGRFAMs:TIGR02386 OMA:VIAEWDP
RefSeq:YP_506555.1 ProteinModelPortal:Q2GD91 SMR:Q2GD91
STRING:Q2GD91 PRIDE:Q2GD91 GeneID:3931848 KEGG:nse:NSE_0677
PATRIC:22681373 BioCyc:NSEN222891:GHFU-691-MONOMER Uniprot:Q2GD91
Length = 1375
Score = 166 (63.5 bits), Expect = 4.5e-27, Sum P(6) = 4.5e-27
Identities = 38/121 (31%), Positives = 69/121 (57%)
Query: 491 KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
K++++H V +NR PTLH+ S+ A +++G K +++H C+ +NADFDGD+M+
Sbjct: 415 KVIHQH-----PVFLNRAPTLHRLSVQAFEPVLIEG-KAIQLHPLVCTAFNADFDGDQMS 468
Query: 551 VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT--KKDTFLNRDEF 608
VH P ++ EA +V + N + P+N P+ +D ++ L+ +K ++ F
Sbjct: 469 VHVPLSIEAQVEARLLVMSTNNVLNPANSRPIIVPSKDIVLGVYYLSLEEKGGVVHPVTF 528
Query: 609 C 609
C
Sbjct: 529 C 529
Score = 142 (55.0 bits), Expect = 4.5e-27, Sum P(6) = 4.5e-27
Identities = 53/158 (33%), Positives = 76/158 (48%)
Query: 270 QQGFGKKAGHSIFFLGVVLVPPIKFR-LPSKGGDSVMEHPQTVLLSKVLQANIYLANA-Y 327
+Q G + L V+ V P R L G L V+ N L + Y
Sbjct: 226 EQFLGSDSRPVDMILDVIPVMPPDLRPLVMLDGGRFATSDLNALYRSVINRNNRLKSLIY 285
Query: 328 VNQPDNAKVIVARWMNLQQSVNVLFD-GKNA-----AGQRDMASGICQLLEKKEGLFRQK 381
+ P N + R M LQ++V+ LFD G+ A + +R S I +L+ K+G FRQ
Sbjct: 286 LKAP-NIIINNERRM-LQEAVDALFDNGRRAKVIKGSNKRPYKS-ISDMLKGKQGRFRQN 342
Query: 382 LMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYP 419
L+GKRV+Y+ RSVI P L +++ G+P AL L P
Sbjct: 343 LLGKRVDYSGRSVIVVGPALELHQCGLPKKIALELFKP 380
Score = 105 (42.0 bits), Expect = 4.5e-27, Sum P(6) = 4.5e-27
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 1143 GEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNV 1176
GE VG++A+QSVGEP TQ+T+ TFH+ G V
Sbjct: 895 GEAVGVIAAQSVGEPGTQLTMRTFHVGGAATRRV 928
Score = 83 (34.3 bits), Expect = 4.5e-27, Sum P(6) = 4.5e-27
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 966 IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1008
II G EY+ R+GL DTA+KT+ SGYL R L+
Sbjct: 742 IISNLREGQGVLEYFNSTHGARKGLADTALKTANSGYLTRRLV 784
Score = 50 (22.7 bits), Expect = 4.5e-27, Sum P(6) = 4.5e-27
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 907 NWISLMTTSGAKGSKVNFQQISSHLG-QQELEGKRVPRMV 945
N I +M SGA+GS +Q++ G + G+ +P +
Sbjct: 703 NSIFMMAQSGARGSAAQIKQLAGMRGLMAKPSGEIIPNPI 742
Score = 50 (22.7 bits), Expect = 9.5e-05, Sum P(3) = 9.5e-05
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 430 LRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIG 467
L+++II G + GA +++DKL + ++S+G
Sbjct: 1330 LKENIIAGRLLPVGAGYFIDKLKREFTGERQGKQVSVG 1367
Score = 45 (20.9 bits), Expect = 4.5e-27, Sum P(6) = 4.5e-27
Identities = 17/68 (25%), Positives = 27/68 (39%)
Query: 88 DSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSLQFAEA---KLALLQFLKIETTKCGNCK 144
D V+ + ++T + VR P +T++ AEA LA L K+
Sbjct: 148 DPGVTTFTKNELITDEAYMNAVREYGPDSFTAMIGAEAIRHMLASLDLEKMAVKLRSQAA 207
Query: 145 AKNPRISK 152
A N + K
Sbjct: 208 ATNSEVKK 215
Score = 44 (20.5 bits), Expect = 5.3e-05, Sum P(5) = 5.3e-05
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 641 EVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKL 684
+V+P++P +P + G + T+ LN + R V+ R +L
Sbjct: 241 DVIPVMPPDLRPLVMLDGGRFATSDLNALYRS----VINRNNRL 280
Score = 43 (20.2 bits), Expect = 6.3e-17, Sum P(5) = 6.3e-17
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 373 KKEGLFRQKLMGKRVNYAC 391
+K GLF K+ G +Y C
Sbjct: 52 EKNGLFCAKIFGPTKSYEC 70
Score = 37 (18.1 bits), Expect = 1.0e-21, Sum P(5) = 1.0e-21
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 1036 EDGVDVHQTSF 1046
EDGV V+ T+F
Sbjct: 556 EDGVKVYTTTF 566
>TAIR|locus:2015163 [details] [associations]
symbol:NRPD1A "nuclear RNA polymerase D1A" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA;IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IGI;IMP] [GO:0031047 "gene silencing by RNA"
evidence=RCA;IMP] [GO:0000418 "DNA-directed RNA polymerase IV
complex" evidence=IDA;IPI] [GO:0007267 "cell-cell signaling"
evidence=RCA;IMP] [GO:0016246 "RNA interference" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0010495
"long-distance posttranscriptional gene silencing" evidence=IMP]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0035196 "production of miRNAs involved
in gene silencing by miRNA" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015801
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC011000
GO:GO:0003677 GO:GO:0007267 GO:GO:0006351 GO:GO:0005507
GO:GO:0048038 GO:GO:0009308 Gene3D:3.10.450.40 GO:GO:0030422
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0006346
EMBL:AC010795 EMBL:AY826515 EMBL:DQ020657 IPI:IPI00523111
PIR:D96655 RefSeq:NP_001185298.1 RefSeq:NP_176490.2
UniGene:At.36192 ProteinModelPortal:Q9LQ02 SMR:Q9LQ02
DIP:DIP-48679N STRING:Q9LQ02 PaxDb:Q9LQ02 PRIDE:Q9LQ02
EnsemblPlants:AT1G63020.1 EnsemblPlants:AT1G63020.2 GeneID:842605
KEGG:ath:AT1G63020 TAIR:At1g63020 eggNOG:COG0086
HOGENOM:HOG000083760 InParanoid:Q9LQ02 KO:K16250 OMA:HQHSLIA
PhylomeDB:Q9LQ02 ProtClustDB:CLSN2680546 Genevestigator:Q9LQ02
GO:GO:0000418 GO:GO:0010495 InterPro:IPR021602 Pfam:PF11523
Uniprot:Q9LQ02
Length = 1453
Score = 197 (74.4 bits), Expect = 6.2e-23, Sum P(6) = 6.2e-23
Identities = 43/127 (33%), Positives = 73/127 (57%)
Query: 486 NEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADF 544
N+ + G ++R L DGD VL+NR P++H+ S++A VR+L + ++ C + DF
Sbjct: 389 NDLQTGDKIFRSLMDGDTVLMNRPPSIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDF 448
Query: 545 DGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT-KKDTFL 603
DGD ++ + PQ ++ E +V + Q + NG L SL QD + +A L+ +K+ +L
Sbjct: 449 DGDCLHGYVPQSIQAKVELDELVALDKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYL 508
Query: 604 NRDEFCQ 610
NR + Q
Sbjct: 509 NRAQMQQ 515
Score = 96 (38.9 bits), Expect = 6.2e-23, Sum P(6) = 6.2e-23
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 382 LMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSII 435
L+GKR ++ R+V+ DP L +NEIGIP A RL E + N +L S +
Sbjct: 313 LLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERLVTSFV 366
Score = 95 (38.5 bits), Expect = 6.2e-23, Sum P(6) = 6.2e-23
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 964 GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
G I + FLTGL P E + H + R+ + G L R L+ + + +YD +VR
Sbjct: 794 GVIENSFLTGLNPLESFVHSVTSRDS--SFSGNADLPGTLSRRLMFFMRDIYAAYDGTVR 851
Query: 1024 DADGS-IVQFCYGEDG 1038
++ G+ +VQF Y DG
Sbjct: 852 NSFGNQLVQFTYETDG 867
Score = 86 (35.3 bits), Expect = 6.2e-23, Sum P(6) = 6.2e-23
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 1 CKTCGQR-QFLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREV 54
C+TCG + + +C GHFG I+ + NP +IC C + + + ++
Sbjct: 56 CRTCGSKDRKVCEGHFGVINFAYSIINPYFLKEVAALLNKICPGCKYIRKKQFQI 110
Score = 43 (20.2 bits), Expect = 8.4e-18, Sum P(6) = 8.4e-18
Identities = 30/108 (27%), Positives = 50/108 (46%)
Query: 803 QMHGFTCGVD--DLLILKDKERERKNHLHGSEEIGKRVH--LEALELEDGAEIDPIKLKS 858
++HGFT VD DLL K R N S++ + L + L+D +D +
Sbjct: 1269 KVHGFTTPVDVYDLLS-STKTMRRTNSAPKSDKATVQPFGLLHSAFLKDIKVLDGKGIPM 1327
Query: 859 EIEKAMRGGGDAAVAYFDMKMTSQ-LNKHTSSSVINELLSE---GLLK 902
+ + + + ++++ SQ L + S INELL+E GL+K
Sbjct: 1328 SLLRTI-------FTWKNIELLSQSLKRILHSYEINELLNERDEGLVK 1368
Score = 42 (19.8 bits), Expect = 1.0e-17, Sum P(6) = 1.0e-17
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 765 DKAQFADYGLVHT--VQELYGSNTAGTLLSALSRLFT 799
DKA +GL+H+ ++++ + G +S L +FT
Sbjct: 1299 DKATVQPFGLLHSAFLKDIKVLDGKGIPMSLLRTIFT 1335
Score = 41 (19.5 bits), Expect = 1.3e-17, Sum P(6) = 1.3e-17
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 818 KDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEK 862
K +RE+ L+ SE + K+ H G E +++K+ +EK
Sbjct: 917 KKGQREQTMSLYLSEYLSKKKH--------GFEYGSLEIKNHLEK 953
Score = 38 (18.4 bits), Expect = 6.2e-23, Sum P(6) = 6.2e-23
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 304 VMEHPQ-TVLLSKVLQANIYLANAYVNQPDNAKVIVARWM 342
VME Q + L S+ + ++ AN Y + D K+ R+M
Sbjct: 270 VMECMQYSRLFSETVSSSKDSANPYQKKSDTPKLCGLRFM 309
Score = 37 (18.1 bits), Expect = 6.2e-23, Sum P(6) = 6.2e-23
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 653 EPLWTGKQV 661
EP WTG Q+
Sbjct: 538 EPQWTGMQL 546
Score = 37 (18.1 bits), Expect = 3.2e-17, Sum P(6) = 3.2e-17
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 827 HLHGSEEIGKRVHLEA 842
H H SE++ KR L A
Sbjct: 983 HFHISEKVLKRKQLSA 998
>TAIR|locus:2061151 [details] [associations]
symbol:NRPD1B "nuclear RNA polymerase D1B" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=ISS]
[GO:0000418 "DNA-directed RNA polymerase IV complex" evidence=IPI]
[GO:0006306 "DNA methylation" evidence=RCA;IMP] [GO:0000419
"DNA-directed RNA polymerase V complex" evidence=IDA;IPI]
[GO:0030880 "RNA polymerase complex" evidence=IPI] [GO:0035194
"posttranscriptional gene silencing by RNA" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0016604 "nuclear body" evidence=IDA] [GO:0030422
"production of siRNA involved in RNA interference"
evidence=IGI;IMP] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016568 "chromatin modification" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051567 "histone H3-K9 methylation" evidence=RCA] [GO:0051726
"regulation of cell cycle" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR015801 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 SMART:SM00663 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0005507 GO:GO:0048038 GO:GO:0009308
Gene3D:3.10.450.40 GO:GO:0030422 GO:GO:0006306 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0016604 EMBL:AF002109 GO:GO:0003899
eggNOG:COG0086 GO:GO:0000418 InterPro:IPR021602 Pfam:PF11523
EMBL:AY826516 EMBL:AY927744 EMBL:DQ020656 IPI:IPI00537496
PIR:D84824 PIR:E84824 RefSeq:NP_181532.2 UniGene:At.37106
ProteinModelPortal:Q5D869 SMR:Q5D869 DIP:DIP-48678N IntAct:Q5D869
STRING:Q5D869 PaxDb:Q5D869 PRIDE:Q5D869 EnsemblPlants:AT2G40030.1
GeneID:818591 KEGG:ath:AT2G40030 TAIR:At2g40030
HOGENOM:HOG000082864 InParanoid:Q5D869 KO:K16251 OMA:QSDSWDG
PhylomeDB:Q5D869 ProtClustDB:CLSN2681712 Genevestigator:Q5D869
GO:GO:0000419 Uniprot:Q5D869
Length = 1976
Score = 177 (67.4 bits), Expect = 2.8e-22, Sum P(4) = 2.8e-22
Identities = 39/129 (30%), Positives = 74/129 (57%)
Query: 478 VQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYAN 536
++ G E + G++V+R + DGDVV +NR PT HK S+ A V V + + T++++
Sbjct: 384 LRDGSKGHTELKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRVYVHE-DNTVKINPLM 442
Query: 537 CSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALL 596
CS +ADFDGD +++ +PQ ++AE + + Q + G + + D ++S ++
Sbjct: 443 CSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLRVM 502
Query: 597 TKKDTFLNR 605
++ FL++
Sbjct: 503 LER-VFLDK 510
Score = 133 (51.9 bits), Expect = 2.8e-22, Sum P(4) = 2.8e-22
Identities = 73/320 (22%), Positives = 135/320 (42%)
Query: 133 LKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRG-----C------NLGET 181
L +E KC +C A P + FG+I + + N ++ C +
Sbjct: 50 LPLEFGKCESCGATEPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKIKKAKG 109
Query: 182 FSGGEEEKDLGA----SSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPS--GFKKQK 235
SGG ++ LG +S + + S ++ + + R Q G G++
Sbjct: 110 TSGGLADRLLGVCCEEASQISIKDRASDGASYLELKLPSRSRLQPGCWNFLERYGYRYGS 169
Query: 236 DLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFR 295
D ++ PLL +VK+I+ ++ E + + + Q+G+ L + VPP
Sbjct: 170 D-YTRPLLAREVKEILRRIPEESRKKLTAKGHIPQEGY---------ILEYLPVPPNCLS 219
Query: 296 LP-SKGGDSVME-HPQTVLLSKVLQANIYLANAYVNQP--DNAKVIVARWMNLQQSVNVL 351
+P + G S M P + L VL+ I + ++ + ++ K + + + +
Sbjct: 220 VPEASDGFSTMSVDPSRIELKDVLKKVIAIKSSRSGETNFESHKAEASEMFRVVDTYLQV 279
Query: 352 FDGKNAAGQRDMASGICQLLEKKEG-LFRQKL----MGKRVNYACRSVISPDPYLAVNEI 406
AA DM G+ ++ + + +K+ + K ++ RSVI+ D Y VNE+
Sbjct: 280 RGTAKAARNIDMRYGVSKISDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEV 339
Query: 407 GIPPYFALRLTYPERVTPWN 426
GIP A R+T+ ERV+ N
Sbjct: 340 GIPIEIAQRITFEERVSVHN 359
Score = 99 (39.9 bits), Expect = 2.8e-22, Sum P(4) = 2.8e-22
Identities = 47/181 (25%), Positives = 80/181 (44%)
Query: 872 VAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTG-KNWISLMTTSGAKGSKVNFQQISSH 930
V+ + +L S + E+ + +LK +N I + + S +K+ QQ +
Sbjct: 646 VSRLRLSYRDELQLENSIHKVKEVAANFMLKSYSIRNLIDIKSNSAI--TKL-VQQ-TGF 701
Query: 931 LGQQELEGKR--VPRMVSGKTLPSFHPWDWAPRAGGFIIDR--FLTGLRPQEYYFHCMAG 986
LG Q + K+ +V + + +G F I + F GL P E H +A
Sbjct: 702 LGLQLSDKKKFYTKTLVEDMAIFCKRKYGRISSSGDFGIVKGCFFHGLDPYEEMAHSIAA 761
Query: 987 REGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDA-DGSIVQFCYGEDGVDVHQTS 1045
RE +V ++ + G L + L+ L + I+ D +VR+ S++QF YG D HQ
Sbjct: 762 REVIVRSSRGLAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVIQFKYGVDSERGHQGL 821
Query: 1046 F 1046
F
Sbjct: 822 F 822
Score = 93 (37.8 bits), Expect = 3.1e-18, Sum P(4) = 3.1e-18
Identities = 28/94 (29%), Positives = 41/94 (43%)
Query: 1 CKTCGQRQ-FLCPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASR-------- 51
C++CG + C GHFG+I L VP+Y+P +C C K ++
Sbjct: 57 CESCGATEPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKIKKAKGTSGGLAD 116
Query: 52 REVEKCVRKLELIIKGDIIA--AKSLDLDLPSES 83
R + C + I D + A L+L LPS S
Sbjct: 117 RLLGVCCEEASQISIKDRASDGASYLELKLPSRS 150
Score = 54 (24.1 bits), Expect = 2.8e-22, Sum P(4) = 2.8e-22
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNT 1165
L + GEPVG+LA+ ++ P+ + L++
Sbjct: 821 LFEAGEPVGVLAATAMSNPAYKAVLDS 847
Score = 43 (20.2 bits), Expect = 3.6e-21, Sum P(4) = 3.6e-21
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 1078 GRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLS 1119
G Q+ Y+K + N Y+M+ D AE+F DK+ +
Sbjct: 1816 GAKQDFSYRK------SLNNYLMK---KYPDRAEEFIDKYFT 1848
Score = 41 (19.5 bits), Expect = 2.6e-15, Sum P(4) = 2.6e-15
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 885 KHTSSSVINELLSEGLLKPTGKNW 908
K S+ L EG KP+G NW
Sbjct: 1292 KFEDSADFQNLHDEG--KPSGANW 1313
>UNIPROTKB|P0C504 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 EMBL:AY522331 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 HAMAP:MF_01323 ProteinModelPortal:P0C504
Gramene:P0C504 HOGENOM:HOG000054284 Genevestigator:P0C504
Uniprot:P0C504
Length = 682
Score = 175 (66.7 bits), Expect = 8.0e-19, Sum P(2) = 8.0e-19
Identities = 52/157 (33%), Positives = 83/157 (52%)
Query: 460 KKMRISIGRKLDTSRGAI-VQPGKDSDNEFEGKMVYRHLQD---GDVVLVNRQPTLHKPS 515
K ++ + R L T R V+ K E E +V+ LQ+ G VL+NR PTLH+
Sbjct: 404 KLFQLFVIRDLITKRATSNVRIAKRKIWEKE-PIVWEILQEVMRGHPVLLNRAPTLHRLG 462
Query: 516 IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
I A +++G +T+ +H C +NADFDGD+M VH P ++AEA ++ ++ +
Sbjct: 463 IQAFQPTLVEG-RTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLS 521
Query: 576 PSNGDPLRSLIQDHIVSAALLT---KKDTFLNRDEFC 609
P+ GDP+ QD ++ +LT ++ NR C
Sbjct: 522 PAIGDPICVPTQDMLIGLYVLTIGNRRGICANRYNSC 558
Score = 142 (55.0 bits), Expect = 8.0e-19, Sum P(2) = 8.0e-19
Identities = 40/135 (29%), Positives = 73/135 (54%)
Query: 288 LVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYV-NQPDNAKVIVARWMNLQQ 346
++PP + + GD V+ L +V++ N LA ++ A +++ + +Q+
Sbjct: 271 VLPPELRPIVYRSGDKVVTSDINELYKRVIRRNNNLAYLLKRSELAPADLVMCQEKLVQE 330
Query: 347 SVNVLFD-GKNAAGQRD----MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYL 401
+V+ L D G RD + + ++E KEG FR+ L+GKRV+Y+ RSVI P L
Sbjct: 331 AVDTLLDSGSRGQPTRDGHNKVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSL 390
Query: 402 AVNEIGIPPYFALRL 416
++++ G+P A++L
Sbjct: 391 SLHQCGLPLEIAIKL 405
Score = 40 (19.1 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 655 LWTGKQVITAVLNHITRGRP 674
+W + ++ +L + RG P
Sbjct: 430 IWEKEPIVWEILQEVMRGHP 449
Score = 39 (18.8 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 416 LTYPERVTPWNVVKLRDSIINGAEIHPGATHY-LDK 450
L P+++ W L + + G P HY DK
Sbjct: 14 LVSPQQIKAWANKTLPNGEVVGEVTRPSTFHYKTDK 49
>UNIPROTKB|P0C505 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 SMART:SM00663 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 EMBL:AY522329 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 ProtClustDB:CHL00018
HAMAP:MF_01323 RefSeq:YP_654207.2 ProteinModelPortal:P0C505
GeneID:4126923 Gramene:P0C505 Uniprot:P0C505
Length = 682
Score = 175 (66.7 bits), Expect = 8.0e-19, Sum P(2) = 8.0e-19
Identities = 52/157 (33%), Positives = 83/157 (52%)
Query: 460 KKMRISIGRKLDTSRGAI-VQPGKDSDNEFEGKMVYRHLQD---GDVVLVNRQPTLHKPS 515
K ++ + R L T R V+ K E E +V+ LQ+ G VL+NR PTLH+
Sbjct: 404 KLFQLFVIRDLITKRATSNVRIAKRKIWEKE-PIVWEILQEVMRGHPVLLNRAPTLHRLG 462
Query: 516 IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
I A +++G +T+ +H C +NADFDGD+M VH P ++AEA ++ ++ +
Sbjct: 463 IQAFQPTLVEG-RTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLS 521
Query: 576 PSNGDPLRSLIQDHIVSAALLT---KKDTFLNRDEFC 609
P+ GDP+ QD ++ +LT ++ NR C
Sbjct: 522 PAIGDPICVPTQDMLIGLYVLTIGNRRGICANRYNSC 558
Score = 142 (55.0 bits), Expect = 8.0e-19, Sum P(2) = 8.0e-19
Identities = 40/135 (29%), Positives = 73/135 (54%)
Query: 288 LVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYV-NQPDNAKVIVARWMNLQQ 346
++PP + + GD V+ L +V++ N LA ++ A +++ + +Q+
Sbjct: 271 VLPPELRPIVYRSGDKVVTSDINELYKRVIRRNNNLAYLLKRSELAPADLVMCQEKLVQE 330
Query: 347 SVNVLFD-GKNAAGQRD----MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYL 401
+V+ L D G RD + + ++E KEG FR+ L+GKRV+Y+ RSVI P L
Sbjct: 331 AVDTLLDSGSRGQPTRDGHNKVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSL 390
Query: 402 AVNEIGIPPYFALRL 416
++++ G+P A++L
Sbjct: 391 SLHQCGLPLEIAIKL 405
Score = 40 (19.1 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 655 LWTGKQVITAVLNHITRGRP 674
+W + ++ +L + RG P
Sbjct: 430 IWEKEPIVWEILQEVMRGHP 449
Score = 39 (18.8 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 416 LTYPERVTPWNVVKLRDSIINGAEIHPGATHY-LDK 450
L P+++ W L + + G P HY DK
Sbjct: 14 LVSPQQIKAWANKTLPNGEVVGEVTRPSTFHYKTDK 49
>UNIPROTKB|P0C506 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 SMART:SM00663 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 EMBL:X15901 EMBL:AY522330
GenomeReviews:AY522330_GR Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 eggNOG:COG0086 ProtClustDB:CHL00018 HAMAP:MF_01323
PIR:JQ0214 RefSeq:NP_039374.1 ProteinModelPortal:P0C506
STRING:P0C506 EnsemblPlants:LOC_Osp1g00250.1 GeneID:3131433
KEGG:osa:3131433 Gramene:P0C506 KO:K03046 OMA:VIDNFIA
Uniprot:P0C506
Length = 682
Score = 175 (66.7 bits), Expect = 8.0e-19, Sum P(2) = 8.0e-19
Identities = 52/157 (33%), Positives = 83/157 (52%)
Query: 460 KKMRISIGRKLDTSRGAI-VQPGKDSDNEFEGKMVYRHLQD---GDVVLVNRQPTLHKPS 515
K ++ + R L T R V+ K E E +V+ LQ+ G VL+NR PTLH+
Sbjct: 404 KLFQLFVIRDLITKRATSNVRIAKRKIWEKE-PIVWEILQEVMRGHPVLLNRAPTLHRLG 462
Query: 516 IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
I A +++G +T+ +H C +NADFDGD+M VH P ++AEA ++ ++ +
Sbjct: 463 IQAFQPTLVEG-RTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLS 521
Query: 576 PSNGDPLRSLIQDHIVSAALLT---KKDTFLNRDEFC 609
P+ GDP+ QD ++ +LT ++ NR C
Sbjct: 522 PAIGDPICVPTQDMLIGLYVLTIGNRRGICANRYNSC 558
Score = 142 (55.0 bits), Expect = 8.0e-19, Sum P(2) = 8.0e-19
Identities = 40/135 (29%), Positives = 73/135 (54%)
Query: 288 LVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYV-NQPDNAKVIVARWMNLQQ 346
++PP + + GD V+ L +V++ N LA ++ A +++ + +Q+
Sbjct: 271 VLPPELRPIVYRSGDKVVTSDINELYKRVIRRNNNLAYLLKRSELAPADLVMCQEKLVQE 330
Query: 347 SVNVLFD-GKNAAGQRD----MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYL 401
+V+ L D G RD + + ++E KEG FR+ L+GKRV+Y+ RSVI P L
Sbjct: 331 AVDTLLDSGSRGQPTRDGHNKVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSL 390
Query: 402 AVNEIGIPPYFALRL 416
++++ G+P A++L
Sbjct: 391 SLHQCGLPLEIAIKL 405
Score = 40 (19.1 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 655 LWTGKQVITAVLNHITRGRP 674
+W + ++ +L + RG P
Sbjct: 430 IWEKEPIVWEILQEVMRGHP 449
Score = 39 (18.8 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 416 LTYPERVTPWNVVKLRDSIINGAEIHPGATHY-LDK 450
L P+++ W L + + G P HY DK
Sbjct: 14 LVSPQQIKAWANKTLPNGEVVGEVTRPSTFHYKTDK 49
>UNIPROTKB|Q6ENI3 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AP006728
GO:GO:0003899 RefSeq:YP_052740.1 ProteinModelPortal:Q6ENI3
GeneID:2885900 Gramene:Q6ENI3 ProtClustDB:CHL00018 HAMAP:MF_01323
Uniprot:Q6ENI3
Length = 682
Score = 175 (66.7 bits), Expect = 8.0e-19, Sum P(2) = 8.0e-19
Identities = 52/157 (33%), Positives = 83/157 (52%)
Query: 460 KKMRISIGRKLDTSRGAI-VQPGKDSDNEFEGKMVYRHLQD---GDVVLVNRQPTLHKPS 515
K ++ + R L T R V+ K E E +V+ LQ+ G VL+NR PTLH+
Sbjct: 404 KLFQLFVIRDLITKRATSNVRIAKRKIWEKE-PIVWEILQEVMRGHPVLLNRAPTLHRLG 462
Query: 516 IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
I A +++G +T+ +H C +NADFDGD+M VH P ++AEA ++ ++ +
Sbjct: 463 IQAFQPTLVEG-RTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLS 521
Query: 576 PSNGDPLRSLIQDHIVSAALLT---KKDTFLNRDEFC 609
P+ GDP+ QD ++ +LT ++ NR C
Sbjct: 522 PAIGDPICVPTQDMLIGLYVLTIGNRRGICANRYNSC 558
Score = 142 (55.0 bits), Expect = 8.0e-19, Sum P(2) = 8.0e-19
Identities = 40/135 (29%), Positives = 73/135 (54%)
Query: 288 LVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYV-NQPDNAKVIVARWMNLQQ 346
++PP + + GD V+ L +V++ N LA ++ A +++ + +Q+
Sbjct: 271 VLPPELRPIVYRSGDKVVTSDINELYKRVIRRNNNLAYLLKRSELAPADLVMCQEKLVQE 330
Query: 347 SVNVLFD-GKNAAGQRD----MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYL 401
+V+ L D G RD + + ++E KEG FR+ L+GKRV+Y+ RSVI P L
Sbjct: 331 AVDTLLDSGSRGQPTRDGHNKVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSL 390
Query: 402 AVNEIGIPPYFALRL 416
++++ G+P A++L
Sbjct: 391 SLHQCGLPLEIAIKL 405
Score = 40 (19.1 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 655 LWTGKQVITAVLNHITRGRP 674
+W + ++ +L + RG P
Sbjct: 430 IWEKEPIVWEILQEVMRGHP 449
Score = 39 (18.8 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 416 LTYPERVTPWNVVKLRDSIINGAEIHPGATHY-LDK 450
L P+++ W L + + G P HY DK
Sbjct: 14 LVSPQQIKAWANKTLPNGEVVGEVTRPSTFHYKTDK 49
>RGD|1305574 [details] [associations]
symbol:Polr3a "polymerase (RNA) III (DNA directed) polypeptide
A" species:10116 "Rattus norvegicus" [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=ISO] [GO:0045087 "innate immune response" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR007081
InterPro:IPR015700 Pfam:PF04998 RGD:1305574 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0086 GO:GO:0032549 HOGENOM:HOG000222974 OrthoDB:EOG4QVCB4
PANTHER:PTHR19376:SF15 IPI:IPI00766228 EMBL:BC086344
UniGene:Rn.41904 ProteinModelPortal:Q5RK26 STRING:Q5RK26
UCSC:RGD:1305574 Genevestigator:Q5RK26 Uniprot:Q5RK26
Length = 491
Score = 216 (81.1 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 43/89 (48%), Positives = 60/89 (67%)
Query: 1115 DKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEM 1174
D+ ++ K FL+ + K++ + +PG VG L +QS+GEP TQMTL TFH AG M
Sbjct: 105 DRITRTQIEK--FLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 162
Query: 1175 NVTLGIPRLQEILTIASKDIKTPVITCPL 1203
N+TLG+PR++EI+ ASK I TP+IT L
Sbjct: 163 NITLGVPRIKEIIN-ASKAISTPIITAQL 190
>UNIPROTKB|E1C7P0 [details] [associations]
symbol:Gga.54058 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007080 InterPro:IPR015699 Pfam:PF04997 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:AADN02014781 IPI:IPI00600568 Ensembl:ENSGALT00000023455
OMA:EELNHHV Uniprot:E1C7P0
Length = 160
Score = 125 (49.1 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 40/151 (26%), Positives = 66/151 (43%)
Query: 11 CPGHFGHIDLVVPVYNPXXXXXXXXXXKRICFFCHHFKASRREVEKCVRKLELIIKGDII 70
CPGHFGHI+L + VYNP + C CH +R V + +L+++ G +
Sbjct: 7 CPGHFGHIELPLTVYNPLFFDKLYLLIRGSCLNCHMLTCTRAVVHLLLSQLKVLEHGLLH 66
Query: 71 AAKSLD------LDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSLQFAE 124
A L+ L+ ++++ E + N ++ + D N+K E
Sbjct: 67 AVHDLEVILNRFLEQSADATALEIEEELNHHVDEILQSQELSDQCSNVK-------NVCE 119
Query: 125 AKLALL-QFLKIETT--KCGNCKAKNPRISK 152
+ L+ QF K T KC NCK++ + K
Sbjct: 120 CRNKLISQFWKAHMTSKKCPNCKSRRSLVRK 150
>UNIPROTKB|P0C507 [details] [associations]
symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:AY522331
GO:GO:0003899 TIGRFAMs:TIGR02388 ProteinModelPortal:P0C507
Gramene:P0C507 HOGENOM:HOG000154184 Genevestigator:P0C507
Uniprot:P0C507
Length = 1513
Score = 105 (42.0 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
L + GE VG++A QS+GEP TQ+TL TFH G
Sbjct: 316 LVELGEAVGVIAGQSIGEPGTQLTLRTFHTGG 347
Score = 92 (37.4 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 973 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK 1009
GL EY C R+G+VDTAV+T+ +GYL R L++
Sbjct: 172 GLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVE 208
Score = 38 (18.4 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 907 NWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
N + LM+ SGA+G N Q+ +G + L
Sbjct: 126 NPVYLMSFSGARG---NASQVHQLVGMRGL 152
>UNIPROTKB|P0C508 [details] [associations]
symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:AY522329
GO:GO:0003899 ProtClustDB:CHL00117 TIGRFAMs:TIGR02388
RefSeq:YP_654208.1 ProteinModelPortal:P0C508 GeneID:4126924
Gramene:P0C508 Uniprot:P0C508
Length = 1513
Score = 105 (42.0 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
L + GE VG++A QS+GEP TQ+TL TFH G
Sbjct: 316 LVELGEAVGVIAGQSIGEPGTQLTLRTFHTGG 347
Score = 92 (37.4 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 973 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK 1009
GL EY C R+G+VDTAV+T+ +GYL R L++
Sbjct: 172 GLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVE 208
Score = 38 (18.4 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 907 NWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
N + LM+ SGA+G N Q+ +G + L
Sbjct: 126 NPVYLMSFSGARG---NASQVHQLVGMRGL 152
>UNIPROTKB|P0C509 [details] [associations]
symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:X15901 EMBL:AY522330
GO:GO:0003899 eggNOG:COG0086 KO:K03046 ProtClustDB:CHL00117
TIGRFAMs:TIGR02388 PIR:JQ0215 RefSeq:NP_039375.1
ProteinModelPortal:P0C509 STRING:P0C509 GeneID:3131434
KEGG:osa:3131434 Gramene:P0C509 Uniprot:P0C509
Length = 1513
Score = 105 (42.0 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
L + GE VG++A QS+GEP TQ+TL TFH G
Sbjct: 316 LVELGEAVGVIAGQSIGEPGTQLTLRTFHTGG 347
Score = 92 (37.4 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 973 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK 1009
GL EY C R+G+VDTAV+T+ +GYL R L++
Sbjct: 172 GLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVE 208
Score = 38 (18.4 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 907 NWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
N + LM+ SGA+G N Q+ +G + L
Sbjct: 126 NPVYLMSFSGARG---NASQVHQLVGMRGL 152
>UNIPROTKB|Q6ENI2 [details] [associations]
symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:AP006728
GO:GO:0003899 RefSeq:YP_052741.1 ProteinModelPortal:Q6ENI2
GeneID:2885930 Gramene:Q6ENI2 ProtClustDB:CHL00117
TIGRFAMs:TIGR02388 Uniprot:Q6ENI2
Length = 1513
Score = 105 (42.0 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
L + GE VG++A QS+GEP TQ+TL TFH G
Sbjct: 316 LVELGEAVGVIAGQSIGEPGTQLTLRTFHTGG 347
Score = 92 (37.4 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 973 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK 1009
GL EY C R+G+VDTAV+T+ +GYL R L++
Sbjct: 172 GLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVE 208
Score = 38 (18.4 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 907 NWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
N + LM+ SGA+G N Q+ +G + L
Sbjct: 126 NPVYLMSFSGARG---NASQVHQLVGMRGL 152
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1208 1138 0.00091 123 3 11 22 0.40 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 90
No. of states in DFA: 624 (66 KB)
Total size of DFA: 515 KB (2238 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 94.86u 0.10s 94.96t Elapsed: 00:00:05
Total cpu time: 94.89u 0.11s 95.00t Elapsed: 00:00:05
Start: Fri May 10 01:22:31 2013 End: Fri May 10 01:22:36 2013