BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046825
         (1208 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255571576|ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis]
 gi|223533923|gb|EEF35648.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis]
          Length = 1686

 Score = 1569 bits (4063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 792/1219 (64%), Positives = 927/1219 (76%), Gaps = 83/1219 (6%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            CKTCGQR   CPGH GHIDLV PVYNPLLFN L+ LL+R CF C HF+  R +VEKC+++
Sbjct: 67   CKTCGQRSTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFLCFHFRMQRGQVEKCIKQ 126

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
            LELI+KGDI+ AK L+   PSE+  PE+SD+S++S C  +      ++  + + Q WTSL
Sbjct: 127  LELIVKGDIVGAKRLESVSPSEALYPEESDLSHES-CPTIHSGVQCNDGEHTRQQGWTSL 185

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGE 180
            QF EA   L  FLK +  KC NC++ NP I+KPTFGW H +GM  A IRAN+I G  LG 
Sbjct: 186  QFTEAMSVLNNFLKPKFKKCKNCESSNPNITKPTFGWFHTSGMSDASIRANVITGHQLGG 245

Query: 181  TFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSG 240
               G E E   G +   DA E        PG Q +  ++H+K        F +QK  FS 
Sbjct: 246  LL-GSEIE---GTTDVEDAAE--------PGDQHSGTKKHKKKERKEVLEFTRQKSTFSK 293

Query: 241  PLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGK-KAGHSIFFLGVVLVPPIKFRLPSK 299
             LLPS+VK+ +E LW+NE  +CSFISD+QQQ FGK KAG ++FFL  +LVPPIKFR P+K
Sbjct: 294  QLLPSEVKEKLELLWKNEARICSFISDLQQQEFGKRKAGPAMFFLETILVPPIKFRPPTK 353

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNA-- 357
            GGDSVMEHPQTVLLSKVLQ+NI L +A++N+  +   IV RW++LQQS+N LFD K A  
Sbjct: 354  GGDSVMEHPQTVLLSKVLQSNISLGDAHINKEHSK--IVRRWLDLQQSINTLFDSKTAKG 411

Query: 358  AGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLT 417
             GQR+ A GICQLLEKKEGLFRQK+MGKRVNYACRSVISPDPY+ VNEIGIPP FA++LT
Sbjct: 412  PGQREGAPGICQLLEKKEGLFRQKMMGKRVNYACRSVISPDPYIGVNEIGIPPCFAVKLT 471

Query: 418  YPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAI 477
            YPERVTPWN+ KLR+++ING+E HPGATHY+DKLS  +LPP +K RISI RKL +SRGA+
Sbjct: 472  YPERVTPWNIAKLRNAVINGSECHPGATHYVDKLSINKLPPARKARISISRKLPSSRGAV 531

Query: 478  VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 537
             Q GK S+ EFEGK+VYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC
Sbjct: 532  TQAGKGSECEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 591

Query: 538  S-TYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALL 596
            S TYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQ+VRPSNG+PLR LIQDHIVSA LL
Sbjct: 592  SITYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQFVRPSNGEPLRGLIQDHIVSAVLL 651

Query: 597  TKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLW 656
            TKKDTFL++DEF QLLYSSGVS+ G  SF G+PGQ+VL SRSE E+  L PAIWKP+PLW
Sbjct: 652  TKKDTFLSQDEFNQLLYSSGVSTVGPNSFHGRPGQKVLWSRSEDEIQTLPPAIWKPKPLW 711

Query: 657  TGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMH 716
            TGKQVITA+LNHIT   PPF VE+  K+P +FFK+R N DK    +K+DK          
Sbjct: 712  TGKQVITAILNHITSDHPPFTVEKDAKIPSNFFKSRANEDKPCQEEKSDK---------- 761

Query: 717  KDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVH 776
                             +  AEK         EEK+L+YKN+LVRGVIDK QF +YGLVH
Sbjct: 762  -----------------DAPAEKEPD------EEKMLVYKNELVRGVIDKGQFGEYGLVH 798

Query: 777  TVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGK 836
            TV EL GS+TAG LLS LSRLFT +LQMHGFTCGVDDLLIL +K+ ERK  L   E+ G+
Sbjct: 799  TVHELLGSHTAGILLSVLSRLFTAYLQMHGFTCGVDDLLILTNKDEERKKQLEWCEKSGE 858

Query: 837  RVHLEALELED-GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL 895
             VH   + ++D   +IDP+ ++  IEK +R  GD+A+AY D +M+++LN  TSS VI+ L
Sbjct: 859  AVHRNFIGIKDEKIKIDPVAMQLNIEKTIRSDGDSALAYLDRQMSNELNTKTSSGVISNL 918

Query: 896  LSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHP 955
            LS+GLLKP+GKN ISLMTTSGAKGSKVNFQQISS LGQQELEGKRVPRMVSGKTLP FHP
Sbjct: 919  LSDGLLKPSGKNCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHP 978

Query: 956  WDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK 1015
            WDWA R+GG+I DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK
Sbjct: 979  WDWAARSGGYITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK 1038

Query: 1016 ISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTF 1075
            I YD++VRDADGS+VQF YGEDGVDVHQTSFI+KF  LA                     
Sbjct: 1039 IGYDHTVRDADGSVVQFYYGEDGVDVHQTSFIAKFKELAL-------------------- 1078

Query: 1076 VMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKF------LSNEMAKQDFLK 1129
                NQ+MIYK+  GQL A N+YI ELP+ALK+ A++F D F       SN + ++D   
Sbjct: 1079 ----NQDMIYKRSGGQLGAFNSYISELPEALKEKADRFLDDFSIMGRIASNLVKREDLYN 1134

Query: 1130 LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTI 1189
            L+K KF+LSLAQPGEPVG+LA+QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL  
Sbjct: 1135 LMKQKFLLSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT 1194

Query: 1190 ASKDIKTPVITCPLLVGKT 1208
            AS DIKTP++TCPL  G+T
Sbjct: 1195 ASIDIKTPIMTCPLQEGRT 1213


>gi|225441748|ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score = 1517 bits (3928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 797/1229 (64%), Positives = 925/1229 (75%), Gaps = 79/1229 (6%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C++CGQR F CPGH GHIDLV  VYNPLLFNLL+ LL++ CFFCHHFK S   V+K V +
Sbjct: 113  CQSCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQ 172

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
            LELI KGD++ AK+LD   PSESS PEDSD S+ S  S V      +   +LK QEWTSL
Sbjct: 173  LELISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTSL 232

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGE 180
            Q  EA   +  FLK++   C NCKAK+P+++KPTFGW HM G+  A  RAN+IRG  L  
Sbjct: 233  QCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSKLER 292

Query: 181  TFSGGEEEK---------DLGASSD-VDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSG 230
              S   EEK         D+    D VD  ETHS      G QDT  +R ++     P  
Sbjct: 293  PLSRVAEEKSSSEVENVNDMFPWGDGVDTDETHSSIAPTDGIQDTVTKRLERKGAQAPIE 352

Query: 231  FKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVV 287
            F KQK  FSGPLLPS+V+DI+E+LWENE ELCSFISD+ Q+  G    KAG+S+FFL  +
Sbjct: 353  FIKQKSFFSGPLLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLETI 412

Query: 288  LVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQS 347
            LVPPIKFR PSKG  SVMEHPQTVLL KVLQANI L NA+ N  + +K+I +RWM+LQQS
Sbjct: 413  LVPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSKII-SRWMDLQQS 471

Query: 348  VNVLFDGKNAAGQ--RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNE 405
            +NVLFDGK AAGQ  RD  SGICQLLEKKEG+FRQK+MGKRVN+ACRSVISPDPYLAVNE
Sbjct: 472  INVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNE 531

Query: 406  IGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRIS 465
            IGIPPYFALRLTYPE+VTPWNVVKLRD+IING EIHPGATHY+DKLST++L  NKKMRIS
Sbjct: 532  IGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRIS 591

Query: 466  IGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLK 525
            I RKL +SRG + QPG+ SDNEFEGK+VYRHLQDGD+VLVNRQPTLHKPSIMAHVVRVLK
Sbjct: 592  ISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLK 651

Query: 526  GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSL 585
            GEKTLRMHYANCSTYNADFDGDEMNVHFPQDE+SRAEAYNIVNANNQY+ PS GDP+R L
Sbjct: 652  GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGL 711

Query: 586  IQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL 645
            IQDHIVSA LLTKKDTFL R+++ QLLYSS   SSG GSF GKPG++V +  SE E+ PL
Sbjct: 712  IQDHIVSAVLLTKKDTFLTREQYNQLLYSS-GLSSGSGSFIGKPGKKVSVLDSEDEMQPL 770

Query: 646  LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKND 705
            LPAIWKPEPLW+GKQVITAVLNHITRGR PF  E+ GK+P+++F +        D KK+ 
Sbjct: 771  LPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEI------DEKKSG 824

Query: 706  KGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVID 765
            KGK                      PG ++  EK    EK+  E KLLI+KN+LVRGVID
Sbjct: 825  KGK---------------------DPGSDRRKEKR--IEKKHGEYKLLIHKNELVRGVID 861

Query: 766  KAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERK 825
            KAQF  YGLVH VQELYGSNTAG LLS LSRLFTVFLQMHGFTCGVDDLLI  + +  RK
Sbjct: 862  KAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARK 921

Query: 826  NHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNK 885
              L  SE IG+ VH + +    G +IDP+KL+ E+EK +   G+AA+   D  M ++LN+
Sbjct: 922  IELDKSENIGELVHCKFIGSNHG-KIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNE 980

Query: 886  HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMV 945
             T S V  +LL +GL+KP  KN +SLMTT+GAKGS VNF QISS LGQQ+LEGKRVPRMV
Sbjct: 981  LT-SKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMV 1039

Query: 946  SGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQR 1005
            SGKTLP F PWD A RAGGFI DRFLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQR
Sbjct: 1040 SGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQR 1099

Query: 1006 CLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRN 1065
            CLIKNLECLK+ YDY+VRD+DGSIVQF YG+DGVDVHQTSFI++F+ALA           
Sbjct: 1100 CLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAV---------- 1149

Query: 1066 KFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLS-----N 1120
                          N+E++ +K  GQ    N YI +LP  L+   +KF + F+      +
Sbjct: 1150 --------------NEEVVCEKF-GQDGKFNGYIQKLPKELRKKTKKFIEGFMEERQDFD 1194

Query: 1121 EMAKQ-DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
             M KQ DF+ LVK K++ SLAQPGEPVG+LA+QSVGEPSTQMTLNTFHLAGRGE+NVTLG
Sbjct: 1195 NMKKQKDFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLG 1254

Query: 1180 IPRLQEILTIASKDIKTPVITCPLLVGKT 1208
            IPRLQEIL  A+ DIKTP++TCPL +G++
Sbjct: 1255 IPRLQEILMTAANDIKTPIMTCPLQMGRS 1283


>gi|297739697|emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score = 1516 bits (3926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 792/1219 (64%), Positives = 920/1219 (75%), Gaps = 81/1219 (6%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C++CGQR F CPGH GHIDLV  VYNPLLFNLL+ LL++ CFFCHHFK S   V+K V +
Sbjct: 64   CQSCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQ 123

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
            LELI KGD++ AK+LD   PSESS PEDSD S+ S  S V      +   +LK QEWTSL
Sbjct: 124  LELISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTSL 183

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGE 180
            Q  EA   +  FLK++   C NCKAK+P+++KPTFGW HM G+  A  RAN+IRG  L  
Sbjct: 184  QCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSKLER 243

Query: 181  TFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSG 240
              +G            VD  ETHS      G QDT  +R ++     P  F KQK  FSG
Sbjct: 244  PLNG------------VDTDETHSSIAPTDGIQDTVTKRLERKGAQAPIEFIKQKSFFSG 291

Query: 241  PLLPSDVKDIIEKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLP 297
            PLLPS+V+DI+E+LWENE ELCSFISD+ Q+  G    KAG+S+FFL  +LVPPIKFR P
Sbjct: 292  PLLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPP 351

Query: 298  SKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNA 357
            SKG  SVMEHPQTVLL KVLQANI L NA+ N  + +K+I +RWM+LQQS+NVLFDGK A
Sbjct: 352  SKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSKII-SRWMDLQQSINVLFDGKTA 410

Query: 358  AGQ--RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALR 415
            AGQ  RD  SGICQLLEKKEG+FRQK+MGKRVN+ACRSVISPDPYLAVNEIGIPPYFALR
Sbjct: 411  AGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALR 470

Query: 416  LTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRG 475
            LTYPE+VTPWNVVKLRD+IING EIHPGATHY+DKLST++L  NKKMRISI RKL +SRG
Sbjct: 471  LTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISRKLPSSRG 530

Query: 476  AIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYA 535
             + QPG+ SDNEFEGK+VYRHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYA
Sbjct: 531  VVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYA 590

Query: 536  NCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAAL 595
            NCSTYNADFDGDEMNVHFPQDE+SRAEAYNIVNANNQY+ PS GDP+R LIQDHIVSA L
Sbjct: 591  NCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVL 650

Query: 596  LTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPL 655
            LTKKDTFL R+++ QLLYSS   SSG GSF GKPG++V +  SE E+ PLLPAIWKPEPL
Sbjct: 651  LTKKDTFLTREQYNQLLYSS-GLSSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPL 709

Query: 656  WTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKM 715
            W+GKQVITAVLNHITRGR PF  E+ GK+P+++F +        D KK+ KGK       
Sbjct: 710  WSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEI------DEKKSGKGK------- 756

Query: 716  HKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLV 775
                           PG ++  EK    EK+  E KLLI+KN+LVRGVIDKAQF  YGLV
Sbjct: 757  --------------DPGSDRRKEKR--IEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLV 800

Query: 776  HTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIG 835
            H VQELYGSNTAG LLS LSRLFTVFLQMHGFTCGVDDLLI  + +  RK  L  SE IG
Sbjct: 801  HMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIG 860

Query: 836  KRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL 895
            + VH + +    G +IDP+KL+ E+EK +   G+AA+   D  M ++LN+ T S V  +L
Sbjct: 861  ELVHCKFIGSNHG-KIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNELT-SKVNKDL 918

Query: 896  LSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHP 955
            L +GL+KP  KN +SLMTT+GAKGS VNF QISS LGQQ+LEGKRVPRMVSGKTLP F P
Sbjct: 919  LLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPP 978

Query: 956  WDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK 1015
            WD A RAGGFI DRFLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK
Sbjct: 979  WDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK 1038

Query: 1016 ISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTF 1075
            + YDY+VRD+DGSIVQF YG+DGVDVHQTSFI++F+ALA                     
Sbjct: 1039 VCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAV-------------------- 1078

Query: 1076 VMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLS-----NEMAKQ-DFLK 1129
                N+E++ +K  GQ    N YI +LP  L+   +KF + F+      + M KQ DF+ 
Sbjct: 1079 ----NEEVVCEKF-GQDGKFNGYIQKLPKELRKKTKKFIEGFMEERQDFDNMKKQKDFVN 1133

Query: 1130 LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTI 1189
            LVK K++ SLAQPGEPVG+LA+QSVGEPSTQMTLNTFHLAGRGE+NVTLGIPRLQEIL  
Sbjct: 1134 LVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMT 1193

Query: 1190 ASKDIKTPVITCPLLVGKT 1208
            A+ DIKTP++TCPL +G++
Sbjct: 1194 AANDIKTPIMTCPLQMGRS 1212


>gi|356537377|ref|XP_003537204.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1653

 Score = 1499 bits (3882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 753/1211 (62%), Positives = 900/1211 (74%), Gaps = 95/1211 (7%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            CK+CGQ    CPGHFGHI+LV PVYNPL+FN+L  +L+R CF CHHF+A  +EV+    +
Sbjct: 64   CKSCGQTSKHCPGHFGHIELVSPVYNPLMFNILSNILQRTCFTCHHFRAPSKEVDIRTSQ 123

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVS------NKSSCSMVTPRGNYDNVRNLKP 114
            LELI+KGDII AK L+  +P +S +  + D S      ++S C      G          
Sbjct: 124  LELIMKGDIIRAKRLESIIPGKSVDSFNPDESIHPGDGDESQCYSAEQLG---------- 173

Query: 115  QEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIR 174
            + WTSLQF+EA   L + L  +  KC  C AKNP+ISKPTFGW HMN +   + RA+ IR
Sbjct: 174  ENWTSLQFSEAMSVLRKLLTKKHKKCQKCGAKNPKISKPTFGWFHMNVLSADETRADTIR 233

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
                  T     ++  LG     D  +      T  GT     R+ +K S  +      +
Sbjct: 234  SVESETT----NDDISLGGGDTTDVEDI-----TSAGTAKRDKRKKEKLSYKLA-----E 279

Query: 235  KDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKF 294
            ++  SG LLPS VK I+E LWENE  LCS+I+D+Q QGFGKKAGHS+FFL  + VPPIKF
Sbjct: 280  QNKLSGSLLPSQVKGILELLWENEARLCSYINDIQDQGFGKKAGHSMFFLENIFVPPIKF 339

Query: 295  RLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDG 354
            R P+KGGD+VMEHPQTVLL+KVLQ NI L +A++N+ D +KV+ +RWM+LQQSVN+LFD 
Sbjct: 340  RPPTKGGDNVMEHPQTVLLTKVLQCNISLGDAHLNKSDPSKVL-SRWMDLQQSVNMLFDN 398

Query: 355  KNAAGQ--RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYF 412
            K A+G+  RD+A+GICQLLEKKEG+FRQK+MGKRVN+ACRSVISPDPYLAVNEIGIPPYF
Sbjct: 399  KTASGESKRDVATGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYF 458

Query: 413  ALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDT 472
            ALRL+YPERVTPWNVVKLR++I+NG E HPGATHY DK+S ++LPP  K+     RKL T
Sbjct: 459  ALRLSYPERVTPWNVVKLRNAILNGPESHPGATHYADKVSIVKLPPKGKLLSLTSRKLPT 518

Query: 473  SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 532
            SRG I+  GK SD+EFEGK+VYRHL+DGDVVLVNRQPTLHKPSIMAH+VRVLKGEKT+RM
Sbjct: 519  SRGVILHQGKISDHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHIVRVLKGEKTVRM 578

Query: 533  HYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVS 592
            HYANCSTYNADFDGDE+NVHFPQDE+SRAEAYNIVNANNQYV+P++GDP+R+LIQDHIVS
Sbjct: 579  HYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVS 638

Query: 593  AALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKP 652
            AALLTKKDTFL+ +EF QLLYSSGVS +GLGSF GK GQ+V IS SE E+    PAIWKP
Sbjct: 639  AALLTKKDTFLSYEEFNQLLYSSGVSMAGLGSFYGKHGQKVFISNSESEMFLFPPAIWKP 698

Query: 653  EPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKT 712
            EPLWTGKQVI+A+L +ITRG PPF  E+  K+P +FFKT+             KGK    
Sbjct: 699  EPLWTGKQVISALLYYITRGSPPFTAEKNAKIPSNFFKTQIR-----------KGK---- 743

Query: 713  NKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY 772
                                  +  E    K+ +  E+KLLIYKNDLVRGV+DKAQF DY
Sbjct: 744  ----------------------RYTEDTSKKKDKPDEDKLLIYKNDLVRGVVDKAQFGDY 781

Query: 773  GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSE 832
            G++HTVQELYGSN AG LLSALSRLFT FLQMHGFTCGVDDL++ + K+ ER N L   E
Sbjct: 782  GMIHTVQELYGSNVAGNLLSALSRLFTTFLQMHGFTCGVDDLMLTEGKDVERMNQLKSCE 841

Query: 833  EIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVI 892
             IG  VH E + +++   IDP+ L+  IEK +R  G+AA+   D KMTS LN  TSS ++
Sbjct: 842  IIGDSVHREFIGVKNSDNIDPVTLQLNIEKKIRSNGEAALT-LDRKMTSNLNSRTSSGIL 900

Query: 893  NELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPS 952
             +LLSEG+LKP+GKN ISLMTTSGAKGS VNFQQISSHLGQQELEGKRVPRMVSGKTLP 
Sbjct: 901  KKLLSEGILKPSGKNCISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPC 960

Query: 953  FHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 1012
            F PWD +PRAGGFIIDRFLT L PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE
Sbjct: 961  FPPWDCSPRAGGFIIDRFLTALHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLE 1020

Query: 1013 CLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGS 1072
            CLK+ YD++VRDADGSI+QF YGEDGVDVHQTSFI++F AL+                  
Sbjct: 1021 CLKVCYDHTVRDADGSIIQFHYGEDGVDVHQTSFITEFGALST----------------- 1063

Query: 1073 HTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVK 1132
                   N+E+++     QLD S+ YI +LP+AL+  AEKF+ +     M + DFL+L++
Sbjct: 1064 -------NKELVFSNYCRQLDRSSPYINKLPEALEGKAEKFSKQRNLGSMEQADFLRLME 1116

Query: 1133 HKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASK 1192
            HK+V  LAQPGEPVG+LASQSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEIL  A++
Sbjct: 1117 HKYVSCLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILMAAAR 1176

Query: 1193 DIKTPVITCPL 1203
            DIKTP +TCPL
Sbjct: 1177 DIKTPFMTCPL 1187


>gi|449437932|ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score = 1469 bits (3803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 752/1217 (61%), Positives = 906/1217 (74%), Gaps = 102/1217 (8%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            CK+CGQR F CPGH GHIDLV PVYNPLLF +L+  L+  CF CHHF+A    VE C   
Sbjct: 64   CKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENCKTL 123

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
            LELI+ G+I  AK L+ +  +  S         KSS SM T    Y+  +N +P+ WTSL
Sbjct: 124  LELILDGEIAKAKELEEEWMNSKSR-------TKSSHSMYT----YER-KNGQPETWTSL 171

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGE 180
            QF+EA   + +FLK + + C  C AK+P+I+KPTFGW HM G+     RAN IR      
Sbjct: 172  QFSEAISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVS 231

Query: 181  TFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSG 240
              SG E     G SS  +   T +    F   +D +           P  F  QK+  SG
Sbjct: 232  VSSGAE-----GVSSLEEETTTEATVEDF---EDVS-----------PEVFM-QKNFSSG 271

Query: 241  PLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKG 300
             LLPS+VKDI+++LW+NE  LCSFISD+ QQG G KAGHS+FFL  VLVPPIKFR P+KG
Sbjct: 272  HLLPSEVKDILKRLWKNEALLCSFISDISQQGHGNKAGHSMFFLESVLVPPIKFRPPAKG 331

Query: 301  GDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG- 359
            GDSVMEHPQTVLL+KVLQ+NI L N + N+ +++K IV  WM+LQQS+N+LFD K+AAG 
Sbjct: 332  GDSVMEHPQTVLLNKVLQSNISLGNGHANKSEHSK-IVRLWMDLQQSINILFDSKSAAGP 390

Query: 360  -QRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTY 418
             + D + GICQLLEKKEG+FRQK+MGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRLTY
Sbjct: 391  GKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTY 450

Query: 419  PERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL--PPNKKMRISIGRKLDTSRGA 476
            PERVT WNV KLR++IING E HPGATHY+DKL+T++L   P++K RISI RKL +SRG 
Sbjct: 451  PERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGV 510

Query: 477  IVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYAN 536
            +V  G D D EFEGK+V RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYAN
Sbjct: 511  VVDQGCD-DYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYAN 569

Query: 537  CS-TYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAAL 595
            CS TYNADFDGDEMNVHFPQDE+SRAEAYNIVNANNQYV+P++G+P+R+LIQDHI+SA L
Sbjct: 570  CSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVL 629

Query: 596  LTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPL 655
            LTKKDTFLN DEF QLLYSSG+S+S   + + KPGQ++     + E+LP+LPA+WKPEPL
Sbjct: 630  LTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPL 689

Query: 656  WTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKM 715
            WTGKQV+TA+L+HIT+G PPF VE+  K+P+ FFK R            D G        
Sbjct: 690  WTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFFKCR------------DMG-------- 729

Query: 716  HKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLV 775
              + S KKKE            + +K K   L ++ LLI+KN+LVRGVIDKAQF DYGLV
Sbjct: 730  --NNSSKKKE----------HTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLV 777

Query: 776  HTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIG 835
            HTVQELYGSNTAG LLS +SRLFTVFLQ HGFTCGVDDLL+++  ++ER+  L   E+IG
Sbjct: 778  HTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIG 837

Query: 836  KRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSS-VINE 894
            ++VHL  L+++DG ++DP+ L+  IEK +   G+AA+   D KMTSQLN+ T +S V+ +
Sbjct: 838  EQVHLGFLKVKDGEKLDPMTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVLKD 897

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
            LLSEGLLKP+ KN ISLMTTSGAKG   NFQQISSHLGQQ+LEGKRVPRMVSGKTLP F 
Sbjct: 898  LLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFP 957

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
            PWDWA RAGGFI+DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE L
Sbjct: 958  PWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESL 1017

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHT 1074
            KI YD++VRDADGS++QF YGEDGVDVH+T+FI+KF+ALAA                   
Sbjct: 1018 KICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEALAA------------------- 1058

Query: 1075 FVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNE-----MAKQDFLK 1129
                 NQ+M+Y+    QL   N +I ELP AL++  E F    LS +     + K+DF++
Sbjct: 1059 -----NQDMLYENSHHQLGKYNVFINELPSALREKGE-FIYNSLSKDKVPGLVLKEDFIR 1112

Query: 1130 LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTI 1189
            L+++K++ SLAQPGEPVG+LA+QS+GEPSTQMTLNTFH  GRGEMNVTLGI RLQEIL  
Sbjct: 1113 LLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHVGRGEMNVTLGILRLQEILMT 1172

Query: 1190 ASKDIKTPVITCPLLVG 1206
            AS+DIKTP++TCPL  G
Sbjct: 1173 ASQDIKTPIMTCPLKEG 1189


>gi|449517429|ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score = 1464 bits (3791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 747/1217 (61%), Positives = 902/1217 (74%), Gaps = 105/1217 (8%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            CK+CGQR F CPGH GHIDLV PVYNPLLF +L+  L+  CF CHHF+A    VE C   
Sbjct: 70   CKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENCKTL 129

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
            LELI+ G+I  AK L+ +  +  S         KSS SM T    Y+  +N +P+ WTSL
Sbjct: 130  LELILDGEIAKAKELEEEWMNSKSR-------TKSSHSMYT----YER-KNGQPETWTSL 177

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGE 180
            QF+EA   + +FLK + + C  C AK+P+I+KPTFGW HM G+     RAN IR      
Sbjct: 178  QFSEAISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVS 237

Query: 181  TFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSG 240
              SG E     G SS  +   T +    F   +D +           P  F  QK+  SG
Sbjct: 238  VSSGAE-----GVSSLEEETTTEATVEDF---EDVS-----------PEVFM-QKNFSSG 277

Query: 241  PLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKG 300
             LLPS+VKDI+++LW+NE  LCSFISD+ QQG G KAGHS+FFL  VLVPPIKFR P+KG
Sbjct: 278  HLLPSEVKDILKRLWKNEALLCSFISDISQQGHGNKAGHSMFFLESVLVPPIKFRPPAKG 337

Query: 301  GDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG- 359
            GDSVMEHPQTVLL+KVLQ+NI L N + N+ +++K IV  WM+LQQS+N+LFD K+AAG 
Sbjct: 338  GDSVMEHPQTVLLNKVLQSNISLGNGHANKSEHSK-IVRLWMDLQQSINILFDSKSAAGP 396

Query: 360  -QRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTY 418
             + D + GICQLLEKKEG+FRQK+MGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRLTY
Sbjct: 397  GKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTY 456

Query: 419  PERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL--PPNKKMRISIGRKLDTSRGA 476
            PERVT WNV KLR++IING E HPGATHY+DKL+T++L   P++K RISI RKL +SRG 
Sbjct: 457  PERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGV 516

Query: 477  IVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYAN 536
            +V  G D D EFEGK+V RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYAN
Sbjct: 517  VVDQGCD-DYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYAN 575

Query: 537  CS-TYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAAL 595
            CS TYNADFDGDEMNVHFPQDE+SRAEAYNIVNANNQYV+P++G+P+R+LIQDHI+SA L
Sbjct: 576  CSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVL 635

Query: 596  LTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPL 655
            LTKKDTFLN DEF QLLYSSG+S+S   + + KPGQ++     + E+LP+LPA+WKPEPL
Sbjct: 636  LTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPL 695

Query: 656  WTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKM 715
            WTGKQV+TA+L+HIT+G PPF VE+  K+P+ F        K+ +  K DK K ++    
Sbjct: 696  WTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFLILDEGNSKKKEHTKVDKLKAAR---- 751

Query: 716  HKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLV 775
                                           L ++ LLI+KN+LVRGVIDKAQF DYGLV
Sbjct: 752  -------------------------------LDDDSLLIFKNELVRGVIDKAQFGDYGLV 780

Query: 776  HTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIG 835
            HTVQELYGSNTAG LLS +SRLFTVFLQ HGFTCGVDDLL+++  ++ER+  L   E+IG
Sbjct: 781  HTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIG 840

Query: 836  KRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSS-VINE 894
            ++VHL  L+++DG ++DP+ L+  IEK +   G+AA+   D KMTSQLN+ T +S V+ +
Sbjct: 841  EQVHLGFLKVKDGEKLDPMTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVLKD 900

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
            LLSEGLLKP+ KN ISLMTTSGAKG   NFQQISSHLGQQ+LEGKRVPRMVSGKTLP F 
Sbjct: 901  LLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFP 960

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
            PWDWA RAGGFI+DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE L
Sbjct: 961  PWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESL 1020

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHT 1074
            KI YD++VRDADGS++QF YGEDGVDVH+T+FI+KF+ALAA                   
Sbjct: 1021 KICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEALAA------------------- 1061

Query: 1075 FVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNE-----MAKQDFLK 1129
                 NQ+M+Y+    QL   N +I ELP AL++  E F    LS +     + K+DF++
Sbjct: 1062 -----NQDMLYENSHHQLGKYNVFINELPSALREKGE-FIYNSLSKDKVPGLVLKEDFIR 1115

Query: 1130 LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTI 1189
            L+++K++ SLAQPGEPVG+LA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRLQEIL  
Sbjct: 1116 LLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMT 1175

Query: 1190 ASKDIKTPVITCPLLVG 1206
            AS+DIKTP++TCPL  G
Sbjct: 1176 ASQDIKTPIMTCPLKEG 1192


>gi|224087062|ref|XP_002308049.1| predicted protein [Populus trichocarpa]
 gi|222854025|gb|EEE91572.1| predicted protein [Populus trichocarpa]
          Length = 1168

 Score = 1458 bits (3774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 737/1177 (62%), Positives = 872/1177 (74%), Gaps = 85/1177 (7%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            CKTCGQR   C GH GHIDL+ PVYNPLLFN L+ LL+R CFFC HF+A   +VEK V +
Sbjct: 62   CKTCGQRSTNCTGHCGHIDLISPVYNPLLFNFLHKLLQRTCFFCFHFRADSNQVEKFVSQ 121

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
            LELIIKGD++ AK LD   P E+S PEDSD S++S CS +     + N    K  EWTSL
Sbjct: 122  LELIIKGDVVGAKRLDSFSPIEASLPEDSDGSSES-CSTIHSGARHPNNEQSKQSEWTSL 180

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGE 180
            Q +EA   L  FLK+E+ KC NC A NP I KPTFGW H  G+ +A IR+NLI+   +  
Sbjct: 181  QLSEAMSILNNFLKLESKKCKNCSASNPNIRKPTFGWFHWAGLSNAAIRSNLIKQQTIEG 240

Query: 181  TFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSG 240
             F G  EE        +DA +        P  +++A  R+ K    +   F  QKD  S 
Sbjct: 241  PFGGAFEEL-------IDAEDA----TKSPSNKESATNRNLKEHQKLQHQFTSQKDALSS 289

Query: 241  PLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKK-AGHSIFFLGVVLVPPIKFRLPSK 299
             LLPS+  DI++ LW+NE  LCS +SD+QQQG GKK AGHS+FFL  VLVPPIKFR P+K
Sbjct: 290  QLLPSEAMDILKLLWKNEARLCSLMSDIQQQGVGKKKAGHSMFFLNTVLVPPIKFRPPTK 349

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
            GGDSVMEHP +VLLSKVL+ N  LA+A+  + ++  +I  RW+ LQQS+NVLFD   A G
Sbjct: 350  GGDSVMEHPLSVLLSKVLELNGSLADAH--RSNDFPLIARRWLELQQSLNVLFDSNTAKG 407

Query: 360  QRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYP 419
            Q+D+ SGICQ+LEKKEG+FRQK+MGKRVNYACRSVISPDPYL VNEIGIPP FA++LTYP
Sbjct: 408  QKDVISGICQILEKKEGMFRQKMMGKRVNYACRSVISPDPYLDVNEIGIPPCFAVKLTYP 467

Query: 420  ERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQ 479
            ERVTPWNV KLR+++INGAE HPGATHY+DKLST +LP N+KMR+S+ RKL         
Sbjct: 468  ERVTPWNVAKLRNAVINGAESHPGATHYVDKLSTTKLPLNRKMRVSVARKLS-------- 519

Query: 480  PGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 539
             G+  D E+EGK+VYRHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST
Sbjct: 520  -GRSVDYEYEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 578

Query: 540  YNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
            YNADFDGDEMNVHFPQDEVSRAE YNIVNANNQYVRPSNG+P+RSLIQDHI+SA LLTKK
Sbjct: 579  YNADFDGDEMNVHFPQDEVSRAEGYNIVNANNQYVRPSNGEPIRSLIQDHIISAVLLTKK 638

Query: 600  DTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
            DTFL  DE  QLLYSSGVS++   SF+GK G++V+    E E+  + PAI KP  LW+GK
Sbjct: 639  DTFLTEDEVYQLLYSSGVSNARPTSFSGKAGRKVIFLSYEDEIETVDPAIRKPIYLWSGK 698

Query: 660  QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
            Q+ITAVLNHITRG PPF VE+GGKL  DFFK++    K S+ +K                
Sbjct: 699  QLITAVLNHITRGHPPFTVEKGGKLSYDFFKSKIKNGKSSNGEK---------------- 742

Query: 720  SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQ 779
                  V   KP +EKE+ K   KE +L ++K++I++N LV+GVIDKAQF +YGLVHTVQ
Sbjct: 743  ------VGVSKPMKEKESGKVNPKENQLEDDKMIIFRNVLVQGVIDKAQFGEYGLVHTVQ 796

Query: 780  ELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVH 839
            EL+G+  AGTLLS  SRLFT +LQMHGFTCGVDDLLI K K+ ERK  L   E+ G+++H
Sbjct: 797  ELFGAKAAGTLLSVFSRLFTAYLQMHGFTCGVDDLLITKIKDDERKKQLENCEKCGEQIH 856

Query: 840  LEALELED-GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSE 898
             + + ++D   +IDP++L+S IEK +R  G++A+ Y D +MT++LN  TSS VINELLSE
Sbjct: 857  RKFIGIKDENIKIDPLELQSNIEKTIRSDGESALTYLDRQMTNELNSKTSSGVINELLSE 916

Query: 899  GLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDW 958
            GLLKP+GKN ISLMTTSGAKGSKVNFQQISS LGQQELEGKRVPRMVSGKTLP FHPWDW
Sbjct: 917  GLLKPSGKNCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDW 976

Query: 959  APRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISY 1018
            A RAGG+IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL+I Y
Sbjct: 977  AARAGGYIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLRIGY 1036

Query: 1019 DYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMG 1078
            D++VRDADGSIVQF YGEDGVDVHQT FI+KF+ALAA                       
Sbjct: 1037 DHTVRDADGSIVQFYYGEDGVDVHQTGFIAKFEALAA----------------------- 1073

Query: 1079 RNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFL-------------SNEMAKQ 1125
             N+E+IY+K S +L   NAYI ELP ALK+ AE F  K               S+ + + 
Sbjct: 1074 -NREIIYEK-SDELGTCNAYISELPKALKEKAETFLRKIAKEQSSLHDPTKDRSSNLVEH 1131

Query: 1126 DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMT 1162
            DF KL+K KF  SLAQPGEPVG+LA+QSVGEPSTQMT
Sbjct: 1132 DFYKLLKQKFFTSLAQPGEPVGVLAAQSVGEPSTQMT 1168


>gi|297817092|ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297322267|gb|EFH52688.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1678

 Score = 1439 bits (3725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 733/1216 (60%), Positives = 896/1216 (73%), Gaps = 80/1216 (6%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCGQ    CPGH GHI+LV P+Y+PLLFNLLY  L+R CF CHHF A   +VE+ V +
Sbjct: 79   CDTCGQLNLACPGHCGHIELVYPIYHPLLFNLLYNFLQRTCFICHHFMAKPYDVERAVSQ 138

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
            L+LIIKGDI++AK L+ + P++S   + SDVS +S  +  +  G  D+  +++ Q WTSL
Sbjct: 139  LKLIIKGDIVSAKQLESNTPTKS---DSSDVSCESGVTTDSSEGCEDS--DMEDQRWTSL 193

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGE 180
            QFAE    +  F+++ +  C  CKA NP++ KP FGW+ M  M  +DI AN+IRG  L +
Sbjct: 194  QFAEVTAVMKNFMRLSSKSCNRCKAVNPQLEKPMFGWVRMKAMKGSDIVANVIRGLKLKK 253

Query: 181  TFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSG 240
            + S  E   D   S  +DA      +    G ++T     ++ S  V   F++  +    
Sbjct: 254  STSSVENPDDFDDSG-IDA-----LSEVEDGDKET-----REKSTEVVKEFEEHNNSSKR 302

Query: 241  PLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKG 300
             LLP++V++I++ LWENE + CSFI D+ Q G  +K  +S+FFL  VLVPPIKFR  +KG
Sbjct: 303  DLLPTEVREILKDLWENEHDFCSFIGDLWQSG-SEKIDYSMFFLESVLVPPIKFRPSTKG 361

Query: 301  GDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQ 360
            GDSVMEHPQTV L+KVL +NI L NA  N+ D +K+I +RWMNLQ+SVNVLFD K A  Q
Sbjct: 362  GDSVMEHPQTVGLNKVLGSNIQLGNACTNKLDQSKII-SRWMNLQESVNVLFDSKTATVQ 420

Query: 361  RDM-ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYP 419
                 SGICQLLEKKEGLFRQK+MGKRVN+ACRSVISPDPY+AVN+IGIPP FAL+LTYP
Sbjct: 421  SQREGSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLTYP 480

Query: 420  ERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQ 479
            ERVTPWNV KLR++IING +IHPGATHY DKLST++LP  +K R +I RKL +SRGA  +
Sbjct: 481  ERVTPWNVEKLREAIINGPDIHPGATHYSDKLSTVKLPSTEKARRAIARKLLSSRGATTE 540

Query: 480  PGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 539
             GK  D  FEGK V+RH++DGDVVLVNRQPTLHKPS+MAH+VRVL+GEKTLR+HYANCST
Sbjct: 541  LGKTCDINFEGKTVHRHMRDGDVVLVNRQPTLHKPSLMAHIVRVLRGEKTLRLHYANCST 600

Query: 540  YNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
            YNADFDGDEMNVHFPQDE+SRAEAYNIVNANNQY RPSNGDPLR+LIQDHIVS+ LLTK+
Sbjct: 601  YNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGDPLRALIQDHIVSSVLLTKR 660

Query: 600  DTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
            DTFL++D F QLL+SSGV+   L SF+G+ G++V++S S+ E+L + PAI KP PLWTGK
Sbjct: 661  DTFLDKDHFNQLLFSSGVTDMVLSSFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGK 720

Query: 660  QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
            QVITAVLN IT+G PPF VE+  KLP DFFK R      S   K + G L+K  K+    
Sbjct: 721  QVITAVLNQITKGHPPFTVEKATKLPVDFFKCR------SREVKPNSGDLTKKKKI---- 770

Query: 720  SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQ 779
                                ++S ++ L+E+KLLI KN+ V GVIDKAQFADYGLVHTV 
Sbjct: 771  --------------------DESWKQNLNEDKLLIRKNEFVCGVIDKAQFADYGLVHTVH 810

Query: 780  ELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVH 839
            ELYGSN AG LLS  SRLFTVFLQ+HGFTCGVDDL+ILKD + ER   L   E +G+RV 
Sbjct: 811  ELYGSNAAGNLLSVFSRLFTVFLQIHGFTCGVDDLIILKDMDEERTKQLQECENVGERVL 870

Query: 840  LEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEG 899
             +   ++   +IDP  ++S IE+ +   G++A+A  D  + + LN+ +S  V+N+LLS+G
Sbjct: 871  RKTFGIDVDVQIDPQDMRSRIERILYEDGESALASLDRSIVNDLNQCSSKGVMNDLLSDG 930

Query: 900  LLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWA 959
            LLK  G N ISLMT SGAKGSKVNFQQISSHLGQQ+LEGKRVPRMVSGKTLP FHPWDW+
Sbjct: 931  LLKTPGMNCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWS 990

Query: 960  PRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYD 1019
            PRAGGFI DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKI+YD
Sbjct: 991  PRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKINYD 1050

Query: 1020 YSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGR 1079
             +VRDADGSI+QF YGEDGVDVH++SFI KF  LA                         
Sbjct: 1051 CTVRDADGSIIQFQYGEDGVDVHRSSFIEKFKELAI------------------------ 1086

Query: 1080 NQEMIYKKCS-GQLDASNAYIMELPDALKDNAEKFADKFLSNE------MAKQDFLKLVK 1132
            NQ+M+ ++CS   L  +N+YI +LP +LK+ AEKF +    NE      + +++ LKLVK
Sbjct: 1087 NQDMVLQRCSEDMLSGANSYISDLPISLKNGAEKFVEAMPMNERIASKFVRQEELLKLVK 1146

Query: 1133 HKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASK 1192
             KF  SLAQPGEPVG+LA+QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL  A+ 
Sbjct: 1147 SKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAA 1206

Query: 1193 DIKTPVITCPLLVGKT 1208
            DIKTP++TCPLL GKT
Sbjct: 1207 DIKTPIMTCPLLKGKT 1222


>gi|147815227|emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]
          Length = 1350

 Score = 1426 bits (3692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 763/1230 (62%), Positives = 886/1230 (72%), Gaps = 128/1230 (10%)

Query: 46   HFKASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGN 105
            HF A   +V+K V +LELI KGD++ AK+LD   PSESS PEDSD S+ S  S V     
Sbjct: 181  HFIA---QVQKYVSQLELISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSAR 237

Query: 106  YDNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPH 165
             +   +LK QEWTSLQ  EA   +  FLK++   C NCKAK+P+++KPTFGW HM G+  
Sbjct: 238  DNCSVHLKQQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSD 297

Query: 166  ADIRANLIRGCNLGETFSGGEEEK---------DLGASSD-VDAPETHSFNGTFPGTQDT 215
            A  RAN+IRG  L    S   EEK         D+    D VD  ETHS      G QDT
Sbjct: 298  AQTRANVIRGSKLERPLSRVAEEKSSSEVENVNDMFPWGDGVDTDETHSSIAPTDGIQDT 357

Query: 216  AARRHQKGSGAVPSGFKKQKDLFSGPLLPSDV---------------------------- 247
              +  ++     P  F KQK  FSGPLLPS+V                            
Sbjct: 358  VTKXLERKGAQAPIEFIKQKSFFSGPLLPSEVCFLXALEHHHQLPWLMSVVVVNYVVTKV 417

Query: 248  KDIIEKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPSKGGDSV 304
            +DI+E+LWENE ELCSFISD+ Q+  G    KAG+S+FFL  +LVPPIKFR PSKG  SV
Sbjct: 418  RDIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISV 477

Query: 305  MEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQ--RD 362
            MEHPQTVLL KVLQANI L NA+ N  + +K+I +RWM+LQQS+NVLFDGK AAGQ  RD
Sbjct: 478  MEHPQTVLLGKVLQANIALGNAHANNSERSKII-SRWMDLQQSINVLFDGKTAAGQGQRD 536

Query: 363  MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERV 422
              SGICQLLEKKEG+FRQK+MGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRLTYPE+V
Sbjct: 537  TGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKV 596

Query: 423  TPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGK 482
            TPWNVVKLRD+IING EIHPGATHY+DKLST++L  NKKMRISI RKL +SRG + QPG+
Sbjct: 597  TPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGR 656

Query: 483  DSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC----- 537
             SDNEFEGK+VYRHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC     
Sbjct: 657  SSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCRVESE 716

Query: 538  -------------STYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRS 584
                         STYNADFDGDEMNVHFPQDE+SRAEAYNIVNANNQY+ PS GDP+R 
Sbjct: 717  HISMLDLDDCSDSSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRG 776

Query: 585  LIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLP 644
            LIQDHIVSA LLTKKDTFL R+++ QLLYSS   SSG GSF GKPG++V +  SE E+ P
Sbjct: 777  LIQDHIVSAVLLTKKDTFLTREQYNQLLYSS-GLSSGSGSFIGKPGKKVSVLDSEDEMQP 835

Query: 645  LLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKN 704
            LLPAIWKPEPLW+GKQVITAVLNHITRGR PF  E+ GK+P+++F +        D KK+
Sbjct: 836  LLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEI------DEKKS 889

Query: 705  DKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVI 764
             KGK                      PG ++  EK    EK+  E KLLI+KN+LVRGVI
Sbjct: 890  GKGK---------------------DPGSDRRKEKR--IEKKHGEYKLLIHKNELVRGVI 926

Query: 765  DKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
            DKAQF  YGLVH VQELYGSNTAG LLS LSRLFTVFLQMHGFTCGVDDLLI  + +  R
Sbjct: 927  DKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIAR 986

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            K  L  SE IG+ VH + +    G +IDP+KL+ E+EK +   G+AA+   D  M ++LN
Sbjct: 987  KIELDKSENIGELVHCKFIGSNHG-KIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELN 1045

Query: 885  KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRM 944
            + T S V  +LL +GL+KP  KN +SLMTT+GAKGS VNF QISS LGQQ+LEGKRVPRM
Sbjct: 1046 ELT-SKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRM 1104

Query: 945  VSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQ 1004
            VSGKTLP F PWD A RAGGFI DRFLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQ
Sbjct: 1105 VSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQ 1164

Query: 1005 RCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGR 1064
            RCLIKNLECLK+ YDY+VRD+DGSIVQF YG+DGVDVHQTSFI++F+ALA          
Sbjct: 1165 RCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAV--------- 1215

Query: 1065 NKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLS----- 1119
                           NQE++ +K  GQ    N YI +LP  L+   +KF + F+      
Sbjct: 1216 ---------------NQEVVCEKF-GQDGKFNGYIQKLPKELRKKTKKFIEGFMEERQDF 1259

Query: 1120 NEMAKQ-DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTL 1178
            + M KQ DF+ LVK K++ SLAQPGEPVG+LA+QSVGEPSTQMTLNTFHLAGRGE+NVTL
Sbjct: 1260 DNMKKQKDFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTL 1319

Query: 1179 GIPRLQEILTIASKDIKTPVITCPLLVGKT 1208
            GIPRLQEIL  A+ DIKTP++TCPL +G++
Sbjct: 1320 GIPRLQEILMTAANDIKTPIMTCPLQMGRS 1349


>gi|357475409|ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
 gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
          Length = 1628

 Score = 1419 bits (3674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 723/1213 (59%), Positives = 866/1213 (71%), Gaps = 104/1213 (8%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C++CG  +  C GHFGHI+LV PVYNPL+F  L  +L R CF CH+F+ASR EV++   +
Sbjct: 65   CESCGMSKDHCSGHFGHIELVSPVYNPLMFLFLGKILNRTCFSCHYFRASRDEVKRRASQ 124

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
            LELI+KG+I  AKSL  ++    +     D  + S  S     G          + WTSL
Sbjct: 125  LELILKGNISKAKSLG-EIKLNETIDSVDDDDDDSQWSGAEQLG----------ESWTSL 173

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGE 180
            QF+EA   + +FL  +  KC NC   +P+I+KPTFG  ++  +     RAN+I      +
Sbjct: 174  QFSEAMSVIYEFLAKDYKKCLNCGCISPKITKPTFGRFNVKALSSVQARANVISSAKAAD 233

Query: 181  TFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSG 240
              +  E+    GA +     +  S       +   +    Q                   
Sbjct: 234  VQADEEDITSGGAGNSNGNNQILSIKLVEQSSLSGSLLPSQ------------------- 274

Query: 241  PLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKG 300
                  V+++I+ LW+NE  LCS ISD+Q QGFGKKAGHS+FFL  + VPPIKFR P K 
Sbjct: 275  ------VQEMIKLLWKNESRLCSHISDIQDQGFGKKAGHSMFFLENIFVPPIKFRPPLKA 328

Query: 301  GDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQ 360
            GD+V EHPQTVLLSKVL++NI LA+A+  + D A  I+ RW +LQ SVN+LFD K +   
Sbjct: 329  GDNVAEHPQTVLLSKVLESNISLADAHRTKSD-AYYILRRWQDLQGSVNLLFDNKTSLRS 387

Query: 361  RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE 420
            +  ASGICQLL+KKEG+FRQK+MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE
Sbjct: 388  QKDASGICQLLDKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE 447

Query: 421  RVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP 480
            RVTPWN  KL D+I+NG + HPGA  Y DK ST+RL  +K +R S  R+L +SRG I+  
Sbjct: 448  RVTPWNSAKLMDAILNGPDTHPGAILYTDKTSTLRLQKDKSLRSSTSRRLQSSRGVIMHH 507

Query: 481  GKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTY 540
            GK  ++EFEGK+VYRHL+DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCSTY
Sbjct: 508  GKIHEHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTY 567

Query: 541  NADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKD 600
            NADFDGDE+NVHFPQDE+SRAEAYNIVNANNQYV+P++GDP+R+LIQDHIVSAALLTKKD
Sbjct: 568  NADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKD 627

Query: 601  TFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQ 660
            TFL+  EF QLLYSSGVS +G+GSF+ KPGQ+VL+S SE E+    PAI+KPEPLWTGKQ
Sbjct: 628  TFLSCQEFNQLLYSSGVSMTGMGSFSCKPGQKVLMSNSESEMFLFPPAIFKPEPLWTGKQ 687

Query: 661  VITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKS 720
            VI+A+L +IT+GRPPF VE+  K+P  FFKT                             
Sbjct: 688  VISALLCYITKGRPPFTVEKNAKIPSSFFKT----------------------------- 718

Query: 721  GKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQE 780
                     + GE K+  K+ S++K+  E+KLLIY+NDLVRGV+DKAQF DYG+VHTVQE
Sbjct: 719  ---------QTGEIKKHTKDTSRKKDELEDKLLIYRNDLVRGVVDKAQFGDYGMVHTVQE 769

Query: 781  LYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHL 840
             YGSNTAG LLSALSRLFT FLQMHGFTCGVDDLLI   K+ ER N L   EEIG  VH 
Sbjct: 770  FYGSNTAGILLSALSRLFTNFLQMHGFTCGVDDLLIKVGKDSERLNQLESCEEIGDIVHR 829

Query: 841  EALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGL 900
            E + + +   IDPI ++  +EK +R  G+AA+ Y D KM S LN  TSS V+ ELLS+G 
Sbjct: 830  EFIGVMESENIDPITMQLNVEKKIRSNGEAAITYLDRKMISNLNSRTSSGVLKELLSKGS 889

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
            LKP+GKNWISLMTTSGAKGS VNFQQISSHLGQQELEGKRVPRMVSGKTLP F  WD +P
Sbjct: 890  LKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPSWDCSP 949

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
            RAGGFIIDRFLT LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LK+ YD+
Sbjct: 950  RAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVCYDH 1009

Query: 1021 SVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRN 1080
            +VRD+DGSI+QF YGEDGVDVHQTSFI+KF+AL+                         N
Sbjct: 1010 TVRDSDGSIIQFHYGEDGVDVHQTSFINKFEALSI------------------------N 1045

Query: 1081 QEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNE-----MAKQDFLKLVKHKF 1135
            +E+IY  C  QLD S+ YI +LPDALK  AE F   F S +     M + DFL++++HK+
Sbjct: 1046 KELIYSNCCRQLDRSSPYINKLPDALKGKAENFIRDFSSKQRNSSSMKEADFLQVMEHKY 1105

Query: 1136 VLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIK 1195
            V SLAQPGEPVG+LASQSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRL EI+  ASK+IK
Sbjct: 1106 VSSLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLHEIVVAASKNIK 1165

Query: 1196 TPVITCPLLVGKT 1208
            TP +TCPL   K+
Sbjct: 1166 TPFMTCPLRPNKS 1178


>gi|15230368|ref|NP_191325.1| DNA-directed RNA polymerase I subunit A1 [Arabidopsis thaliana]
 gi|4678281|emb|CAB41189.1| DNA-directed RNA polymerase I 190K chain-like protein [Arabidopsis
            thaliana]
 gi|332646163|gb|AEE79684.1| DNA-directed RNA polymerase I subunit A1 [Arabidopsis thaliana]
          Length = 1670

 Score = 1415 bits (3662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 727/1218 (59%), Positives = 891/1218 (73%), Gaps = 86/1218 (7%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C +CGQ +  CPGH GHI+LV P+Y+PLLFNLL+  L+R CFFCHHF A   +VE+ V +
Sbjct: 79   CNSCGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAVSQ 138

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYD-NVRNLKPQEWTS 119
            L+LIIKGDI++AK L      ES+ P  S  S++S  S+VT   + +    +++ Q WTS
Sbjct: 139  LKLIIKGDIVSAKQL------ESNTPTKSKSSDESCESVVTTDSSEECEDSDVEDQRWTS 192

Query: 120  LQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLG 179
            LQFAE    L  F+++ +  C  CK  NP++ KP FGW+ M  M  +D+ AN+IRG  L 
Sbjct: 193  LQFAEVTAVLKNFMRLSSKSCSRCKGINPKLEKPMFGWVRMRAMKDSDVGANVIRGLKLK 252

Query: 180  ETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFS 239
            ++ S  E   D    S +DA      +    G ++T     ++ S  V + F++      
Sbjct: 253  KSTSSVEN-PDGFDDSGIDA-----LSEVEDGDKET-----REKSTEVAAEFEEHNS--K 299

Query: 240  GPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSK 299
              LLPS+V++I++ LW+NE E CSFI D+ Q G  +K  +S+FFL  VLVPP KFR P+ 
Sbjct: 300  RDLLPSEVRNILKHLWQNEHEFCSFIGDLWQSG-SEKIDYSMFFLESVLVPPTKFRPPTT 358

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAA- 358
            GGDSVMEHPQTV L+KV+++N  L NA  N+ D +KVI  RW NLQ+SVNVLFD K A  
Sbjct: 359  GGDSVMEHPQTVGLNKVIESNNILGNACTNKLDQSKVIF-RWRNLQESVNVLFDSKTATV 417

Query: 359  -GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLT 417
              QRD +SGICQLLEKKEGLFRQK+MGKRVN+ACRSVISPDPY+AVN+IGIPP FAL+LT
Sbjct: 418  QSQRD-SSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLT 476

Query: 418  YPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAI 477
            YPERVTPWNV KLR++IING +IHPGATHY DK STM+LP  +K R +I RKL +SRGA 
Sbjct: 477  YPERVTPWNVEKLREAIINGPDIHPGATHYSDKSSTMKLPSTEKARRAIARKLLSSRGAT 536

Query: 478  VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 537
             + GK  D  FEGK V+RH++DGD+VLVNRQPTLHKPS+MAH VRVLKGEKTLR+HYANC
Sbjct: 537  TELGKTCDINFEGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANC 596

Query: 538  STYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
            STYNADFDGDEMNVHFPQDE+SRAEAYNIVNANNQY RPSNG+PLR+LIQDHIVS+ LLT
Sbjct: 597  STYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLT 656

Query: 598  KKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWT 657
            K+DTFL++D F QLL+SSGV+   L +F+G+ G++V++S S+ E+L + PAI KP PLWT
Sbjct: 657  KRDTFLDKDHFNQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLWT 716

Query: 658  GKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHK 717
            GKQVITAVLN IT+G PPF VE+  KLP DFFK R      S   K + G L+       
Sbjct: 717  GKQVITAVLNQITKGHPPFTVEKATKLPVDFFKCR------SREVKPNSGDLT------- 763

Query: 718  DKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHT 777
                KKKE+             ++S ++ L+E+KL I KN+ V GVIDKAQFADYGLVHT
Sbjct: 764  ----KKKEI-------------DESWKQNLNEDKLHIRKNEFVCGVIDKAQFADYGLVHT 806

Query: 778  VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKR 837
            V ELYGSN AG LLS  SRLFTVFLQ HGFTCGVDDL+ILKD + ER   L   E +G+R
Sbjct: 807  VHELYGSNAAGNLLSVFSRLFTVFLQTHGFTCGVDDLIILKDMDEERTKQLQECENVGER 866

Query: 838  VHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLS 897
            V  +   ++   +IDP  ++S IE+ +   G++A+A  D  + + LN+ +S  V+N+LLS
Sbjct: 867  VLRKTFGIDVDVQIDPQDMRSRIERILYEDGESALASLDRSIVNYLNQCSSKGVMNDLLS 926

Query: 898  EGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWD 957
            +GLLK  G+N ISLMT SGAKGSKVNFQQISSHLGQQ+LEGKRVPRMVSGKTLP FHPWD
Sbjct: 927  DGLLKTPGRNCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWD 986

Query: 958  WAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIS 1017
            W+PRAGGFI DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LK++
Sbjct: 987  WSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVN 1046

Query: 1018 YDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVM 1077
            YD +VRDADGSI+QF YGEDGVDVH++SFI KF  L                        
Sbjct: 1047 YDCTVRDADGSIIQFQYGEDGVDVHRSSFIEKFKELTI---------------------- 1084

Query: 1078 GRNQEMIYKKCS-GQLDASNAYIMELPDALKDNAEKFADKFLSNE------MAKQDFLKL 1130
              NQ+M+ +KCS   L  +++YI +LP +LK  AEKF +    NE      + +++ LKL
Sbjct: 1085 --NQDMVLQKCSEDMLSGASSYISDLPISLKKGAEKFVEAMPMNERIASKFVRQEELLKL 1142

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            VK KF  SLAQPGEPVG+LA+QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL  A
Sbjct: 1143 VKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 1202

Query: 1191 SKDIKTPVITCPLLVGKT 1208
            + +IKTP++TCPLL GKT
Sbjct: 1203 AANIKTPIMTCPLLKGKT 1220


>gi|356498537|ref|XP_003518107.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA190-like [Glycine max]
          Length = 1568

 Score = 1102 bits (2850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/920 (61%), Positives = 681/920 (74%), Gaps = 88/920 (9%)

Query: 308  PQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQ--RDMAS 365
            P ++ +SKVLQ NI L +A++N+ D +KV+ + WM+LQQSVN+LFD K A+G+  RD+A+
Sbjct: 276  PFSLFISKVLQCNISLGDAHLNKSDPSKVL-SWWMDLQQSVNMLFDNKTASGESKRDVAT 334

Query: 366  GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPER---- 421
            GIC+LLEKKEG+FRQK+MGK V +ACRSVISPDPYLAVNEIGIPPYFALRL+YPE     
Sbjct: 335  GICRLLEKKEGIFRQKMMGKMVYFACRSVISPDPYLAVNEIGIPPYFALRLSYPEVRIVT 394

Query: 422  -----VTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGA 476
                 VTPWNVVKLR++I+NGAE HP A+HY DK+S ++LPP  K      RKL TSRG 
Sbjct: 395  RYHSIVTPWNVVKLRNAILNGAESHPSASHYADKVSIVKLPPKGKFLSLTSRKLPTSRGV 454

Query: 477  IVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYAN 536
            I+  G+ SD+EFEGK+VYRHL+DGDVVL NRQPTLHKPSIMAH+VRVLKGEKT+RMHYAN
Sbjct: 455  ILHQGRXSDHEFEGKVVYRHLKDGDVVLANRQPTLHKPSIMAHIVRVLKGEKTVRMHYAN 514

Query: 537  CS-TYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAAL 595
            CS TYNADFDGDE+NVHFPQDE+SRAEAYNIVNANNQYV+P++GDP+R+LIQDHIVSAAL
Sbjct: 515  CSCTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAAL 574

Query: 596  LTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKP--- 652
            LTKKDTFL+ +EF QLLYSSGVS +GLGSF GK GQ+V +S SE E+    PAIWKP   
Sbjct: 575  LTKKDTFLSYEEFNQLLYSSGVSMAGLGSFYGKHGQKVFMSNSESEMFLFPPAIWKPLXL 634

Query: 653  ------EPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDK 706
                    L +   VI+A+L +ITRG P F VE+  K+P +FFKTR             K
Sbjct: 635  SLFXCXNKLLSKXTVISALLYYITRGSPSFTVEKNAKIPSNFFKTRIR-----------K 683

Query: 707  GKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
            GK                          +  +    K+++  E+KLLIYKNDLVRG++DK
Sbjct: 684  GK--------------------------RYTQDTSKKKEKPDEDKLLIYKNDLVRGIVDK 717

Query: 767  AQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKN 826
            AQF D G++H VQELYGSN AG LLSALSRLFT FLQMHGFTCGVDDL++ + K+ ER N
Sbjct: 718  AQFGDXGMIHRVQELYGSNVAGNLLSALSRLFTTFLQMHGFTCGVDDLMLTEGKDVERMN 777

Query: 827  HLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKH 886
             L+  E IG  VH E + +++   ID + L+  IEK +R  G+A +   D KMT++LN  
Sbjct: 778  QLNSCEIIGNSVHREFIRVKNSDNIDSVTLQLNIEKKIRSNGEATLTS-DRKMTNKLNST 836

Query: 887  TSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVS 946
            TSS ++ ELLSEG+L+P+GKN ISLMTTSGAKGS VNFQQISSHLGQQELEGKRVPRMVS
Sbjct: 837  TSSGILKELLSEGILQPSGKNCISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVS 896

Query: 947  GKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRC 1006
            GKTLP F PWD +PRAGGFIIDRFLT L PQEYYFHCMAG EGLVDTAVKTSRSGYLQRC
Sbjct: 897  GKTLPCFPPWDCSPRAGGFIIDRFLTALHPQEYYFHCMAGCEGLVDTAVKTSRSGYLQRC 956

Query: 1007 LIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNK 1066
            L+KNLECLK+ YD++VRDADGSI+QF YGEDGVDVHQT                      
Sbjct: 957  LMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQTCLF------------------- 997

Query: 1067 FCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQD 1126
            F +  +H   +  N+E++Y     QLD S+ YI +LPDAL+  AEKF+ +     M   D
Sbjct: 998  FLE--NHKLHIQLNKELVYSNYCRQLDRSSPYINKLPDALEGKAEKFSKQRNLGSMEHAD 1055

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMT---LNTFHLAGRGEMNVTLGIPRL 1183
            F++L++HK+V  L QPGEPVG+LASQSVGEP+TQMT   L++FH       NVTLGIP L
Sbjct: 1056 FVRLIEHKYVSCLTQPGEPVGVLASQSVGEPATQMTXDFLHSFHXWS----NVTLGIPCL 1111

Query: 1184 QEILTIASKDIKTPVITCPL 1203
            QEIL  A++DIKTP +TCPL
Sbjct: 1112 QEILMAAARDIKTPFMTCPL 1131



 Score =  153 bits (386), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 82/169 (48%), Positives = 101/169 (59%), Gaps = 23/169 (13%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           CK+CGQ    CP HFGHI+LV PVYNPL FN+   +L+R CF CHHF++ R+EV+    +
Sbjct: 108 CKSCGQTTKHCPDHFGHIELVSPVYNPLTFNIPSNILQRTCFSCHHFQSLRKEVDIRAFQ 167

Query: 61  LELIIKGDIIAA---------KSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRN 111
           LELI+KGDII A         KS+D   P E  +P D DVS    C      G       
Sbjct: 168 LELIMKGDIIMAKNLESIITEKSVDFFNPDEFVHPGDGDVSQ---CYSAEKLG------- 217

Query: 112 LKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHM 160
              + WTSLQF+EA   L +FL  +  KC  C A+NPRISKPTFGW +M
Sbjct: 218 ---ENWTSLQFSEAXSVLRKFL-TKKHKCQECGAENPRISKPTFGWFYM 262


>gi|357114820|ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like
            [Brachypodium distachyon]
          Length = 1868

 Score = 1074 bits (2778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/1217 (47%), Positives = 772/1217 (63%), Gaps = 115/1217 (9%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREV---EKC 57
            C TCGQ   LCPGHFGHI+L  P++NPLLF  L  LL+  CF CH F+    +V    + 
Sbjct: 292  CNTCGQLSGLCPGHFGHIELSKPLFNPLLFGTLRDLLRSTCFSCHRFRLHSEQVSPVRRY 351

Query: 58   VRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
             R+LEL+ +GD+  AK+L     +E    ED ++   SS    +P        + + + W
Sbjct: 352  TRELELVARGDVARAKNLQDSGVAE----EDVEMDEDSSVDQSSPS-------DRENKTW 400

Query: 118  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCN 177
            TS+Q  EA   + + LK +  KC NC  ++P+++   FGW+ +     + +R   I   N
Sbjct: 401  TSIQLKEAHAIIFKLLKKQVKKCANCDMRSPKVTCQIFGWLKIQDTKGSSVRRKAITDFN 460

Query: 178  LGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDL 237
            L             G S   D+ E    NG    + D       KGS    +G    + +
Sbjct: 461  LE------------GDSHRHDSSE----NGVSGLSDDII-----KGSSNQITGLSDDR-I 498

Query: 238  FSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQ--GFGKKAGHSIFFLGVVLVPPIKFR 295
               PLL ++V+ I++ LWENE   C  + D QQ      K+ G+ +FFL  +LV P +FR
Sbjct: 499  KEIPLLATEVESILKDLWENEARFCMLLCDFQQNLSVSEKRRGYEMFFLKSLLVTPNRFR 558

Query: 296  LPSKGGDSVMEHPQTVLLSKVLQANIYLAN--AYVNQPDNAKVIVARWMNLQQSVNVLFD 353
              +     +MEHPQ VLL KV +AN+ + +  A+ N  D    I+ RW +LQ SVN+ +D
Sbjct: 559  PSTSSSLGIMEHPQNVLLGKVQEANLAVQHDKAHPNHMD----IITRWRDLQTSVNLFYD 614

Query: 354  G-KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYF 412
              K         +GI QLL+KK G+ RQK+MGKRVN++CR+VISPDP+LAVNEIGIPP  
Sbjct: 615  SSKGFGNGDGDGNGIRQLLDKKGGVIRQKMMGKRVNHSCRTVISPDPFLAVNEIGIPPQA 674

Query: 413  ALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDT 472
            AL++TYPE V P N  KL+++I NG  IHPGATHY    +  +L  ++  R +I + L  
Sbjct: 675  ALKMTYPENVMPCNAKKLQEAINNGCGIHPGATHYKVNKNMYKLQDDRSKRRAIAKMLPA 734

Query: 473  SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 532
            SRG+I QPGKD   EFE K+VYRHLQDGD+VLVNRQPTLHKPS+MAH VRVL GEKT+RM
Sbjct: 735  SRGSISQPGKDPKCEFESKVVYRHLQDGDIVLVNRQPTLHKPSMMAHFVRVLPGEKTIRM 794

Query: 533  HYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVS 592
            HYANCSTYNADFDGDEMNVHFPQDE+SRAEA NIV+AN QY+ P +GD +R LIQDHIVS
Sbjct: 795  HYANCSTYNADFDGDEMNVHFPQDEISRAEAMNIVDANKQYIGPRSGDAVRGLIQDHIVS 854

Query: 593  AALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLL-PAIWK 651
            A LLTK DTF++R+E+ QL+Y S VSS+     +GK   RV + + + ++L LL PAI K
Sbjct: 855  AVLLTKLDTFISREEYSQLVYGSCVSSTRSPCQSGK---RVSVMK-DGDILELLPPAILK 910

Query: 652  PEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSK 711
            P+PLWTGKQVIT +LNH+T+G PPF VE+ GK+P  +   +                   
Sbjct: 911  PKPLWTGKQVITTILNHLTKGHPPFTVEKKGKIPVKYLIPK------------------- 951

Query: 712  TNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD 771
                                  E+  +K+ +K+   SE+ L I+ N+L++G+IDK QF +
Sbjct: 952  ----------------------ERHGDKDNAKD---SEQVLYIHDNELIKGMIDKDQFGN 986

Query: 772  YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGS 831
            YG+VHTV ELYG+ TAG LLS  SRLFT+FLQ+HGFTCG+DDLL+ ++ +++R   L  S
Sbjct: 987  YGIVHTVYELYGAETAGRLLSIFSRLFTLFLQLHGFTCGIDDLLLFQESDKQRTETLMTS 1046

Query: 832  EEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSV 891
            E+  + VH +     D  E DP+KL+ E+EK +R  G++A    D  M S LN    S V
Sbjct: 1047 EKCSEEVHRKFTCAGDYDE-DPLKLQMEVEKVVRRIGESATDTLDKMMLSALNG-LQSEV 1104

Query: 892  INELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLP 951
               L   GL KP  +N ++LMT +GAKG +VN  QI+S LG Q+LEG RVPRM+SGK+LP
Sbjct: 1105 NRRLFPYGLQKPFPRNCLTLMTATGAKGGEVNMTQITSLLGSQDLEGARVPRMISGKSLP 1164

Query: 952  SFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 1011
             F PWD + RAGGF+ DRFLTGLRPQEYYFHCMAGR GL+DTAVKTSRSGYLQRCL+K+L
Sbjct: 1165 CFPPWDTSSRAGGFVSDRFLTGLRPQEYYFHCMAGRNGLIDTAVKTSRSGYLQRCLVKSL 1224

Query: 1012 ECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKF-DALAARERGRGRGRNKFCDK 1070
            E L ++YD++VR+ DGSIVQF YGEDGVDVH+++F+ KF D    +E    R        
Sbjct: 1225 ESLFVAYDHTVRNVDGSIVQFRYGEDGVDVHKSNFLDKFQDKDMFKELADNR-------- 1276

Query: 1071 GSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADK---FLSNEMAKQDF 1127
                 V+ R    + +     +   + YI ELP+AL D A KF  K      +++ + + 
Sbjct: 1277 ---KAVLDR----LGRYTGDHMSLQSNYITELPEALTDRATKFLSKDKGRCRHDIKEDEL 1329

Query: 1128 LKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 1187
            + L+K K++ SL  PGE VG++ +QS+GEPSTQMTLNTFH AGR ++NVTLG+PR+QEIL
Sbjct: 1330 MNLLKAKYLASLVDPGEAVGVILAQSLGEPSTQMTLNTFHFAGRSDVNVTLGMPRIQEIL 1389

Query: 1188 TIASKDIKTPVITCPLL 1204
              AS +I TPV+ CPLL
Sbjct: 1390 MKASANIATPVMMCPLL 1406


>gi|225217014|gb|ACN85301.1| putative RNA polymerase A(I) large subunit [Oryza coarctata]
          Length = 1830

 Score = 1070 bits (2768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/1304 (46%), Positives = 768/1304 (58%), Gaps = 196/1304 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            CK+CGQ    CPGHFGHI+L  P++NPLLF  L  LL   CF CH F+ +R +V++   +
Sbjct: 65   CKSCGQHSVRCPGHFGHIELAKPLFNPLLFMSLKNLLHVTCFHCHKFRLNRGQVDRYTNE 124

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
            LEL+++GDI  AK+L+ D   +    ED +    S   +    G        + + WTS+
Sbjct: 125  LELLVRGDIALAKNLE-DSGGKVFLAEDDETEATSGDKLACSEG--------ENKTWTSI 175

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNL-G 179
            Q  EA     + LK    KC +C  KNP+IS P +GW+  +    + +RAN+I    L G
Sbjct: 176  QLKEALSIFAKLLKKRQKKCVHCDKKNPKISHPVYGWLIKDTT--SSVRANVIADAKLSG 233

Query: 180  ETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFS 239
            ++      E    A S +D   T     +   T +T           V S  KK      
Sbjct: 234  DSRVHDSRET---AVSGLDEELTSPGTSSRGSTNETRRISDDTIKEMVASSGKKH----- 285

Query: 240  GPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRL 296
              LL ++V+ I++ LW+NE   C  + D QQ       K  G+ +FFL  +LV P +FR 
Sbjct: 286  --LLTTEVESILKNLWKNEARFCMLLCDFQQNTLNVSDKGRGYEMFFLKNLLVAPNRFRP 343

Query: 297  PSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDG-K 355
                   +MEHPQ VLL KV +AN+ L  +  N   N   ++ RWM+LQ+SVNVL+D  K
Sbjct: 344  SISSSLGIMEHPQNVLLGKVQEANLALQQS--NTSSNHMEVLRRWMDLQRSVNVLYDSSK 401

Query: 356  NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALR 415
              A     A+GI QLLEKKEG+ RQK+MGKRVNYACRSVISPDPYLAVNEIGIPP FA R
Sbjct: 402  GLAKSEKNANGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPVFATR 461

Query: 416  LTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRG 475
            LTYPE+VTPWN  KL+++I NGA+IHPGATHY D  +  +L      R +I + L  SRG
Sbjct: 462  LTYPEKVTPWNARKLQEAINNGADIHPGATHYRDNNNMYKLQAAPPKRRAIAKMLPASRG 521

Query: 476  AIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYA 535
            +I QPGKD   EFE K+VYRHLQDGD+VLVNRQPTLHKPS+MAH VRVL GEKT+RMHYA
Sbjct: 522  SISQPGKDPKCEFESKVVYRHLQDGDIVLVNRQPTLHKPSMMAHFVRVLPGEKTIRMHYA 581

Query: 536  NCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAAL 595
            NCSTYNADFDGDEMNVHFPQDE+SRAEA NIV+AN QY+ P +GD +R LIQDHIV A L
Sbjct: 582  NCSTYNADFDGDEMNVHFPQDEISRAEAINIVDANKQYIGPRSGDAVRGLIQDHIVGAVL 641

Query: 596  LTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPL 655
            LTK DTFL+R+E+ QL+Y S V SS   S  G+ G+++ I   +  + P+ PAIWKP+PL
Sbjct: 642  LTKLDTFLSREEYNQLVYGSCVLSSARRS--GQFGKKISIIMDDDVLEPVPPAIWKPKPL 699

Query: 656  WTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKM 715
            WTGKQVIT +LNH+T+G PPF VE+ GK+ +++                    + K    
Sbjct: 700  WTGKQVITTILNHVTKGHPPFTVEQQGKISKEYL-------------------IPKKCDG 740

Query: 716  HKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLV 775
             KDK+    E+V                        L ++ N+L++G+IDKAQF  YG+V
Sbjct: 741  AKDKTRVPSELV------------------------LYVHDNELIKGMIDKAQFGKYGIV 776

Query: 776  HTVQELYGSNTAGTLLSALSRLFT---------------------------------VFL 802
            HTV ELYG  TAG LLSA SRLFT                                 +F 
Sbjct: 777  HTVHELYGPETAGVLLSAFSRLFTIVLQIRGFVELGITNSKKSWIQSCAKRGELRTFIFF 836

Query: 803  QMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL------ELEDG-------- 848
            Q+HGFTCGVDDLL+ ++ ++ RK  L GSE+  KRVH +        E +DG        
Sbjct: 837  QLHGFTCGVDDLLLCQESDKLRKEILAGSEKESKRVHRDITRPKKDDEPKDGHEDGKPRK 896

Query: 849  -----AEIDPIKLKSEIE-----------------------------KAMRGGGDAAVAY 874
                 +E D  + K + E                             KA  G  D     
Sbjct: 897  EIPGTSEEDSKRHKEDDEAEGGDEGNKRRKEIPGTCEEDSKRPKDDDKAEDGVEDQVKLQ 956

Query: 875  FDMKMTSQLNKHTSSSVINELLSEGL-----LKPTGKNWISLMTTSGAKGSKVNFQQISS 929
             +++   + N  +++ +++  +   L      KP   N +SLMT +GAKG  VN  QISS
Sbjct: 957  MEVEKLIRRNGESATVILDRNMCNALNDITSEKPFPGNCLSLMTQTGAKGGLVNMTQISS 1016

Query: 930  HLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREG 989
             LGQQELEGKRVPRM+SGKTLP F PWD + RAGGFI DRFLTGLRPQEYYFHCMAGREG
Sbjct: 1017 LLGQQELEGKRVPRMISGKTLPCFPPWDTSSRAGGFISDRFLTGLRPQEYYFHCMAGREG 1076

Query: 990  LVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISK 1049
            LVDTAVKTSRSGYLQRCLIK+LE LK+SYD++          FCYGEDGVDV +TSF+ K
Sbjct: 1077 LVDTAVKTSRSGYLQRCLIKSLESLKVSYDHT----------FCYGEDGVDVLKTSFLDK 1126

Query: 1050 FDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDN 1109
            F  L+   R      +   DK  H                  L   N YI ELP  L +N
Sbjct: 1127 FRELSDNRRAVLDKLDSHNDK--HL-----------------LSNPNGYISELPAKLIEN 1167

Query: 1110 AEKFADKFLSNEMAKQD-----FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLN 1164
            A KF      NE  + D      +KL+K K++ SL  PGE VG++A+QS+GEPSTQMTLN
Sbjct: 1168 AMKF---LKENEKGRYDIREEELMKLLKVKYLSSLVDPGEAVGVVAAQSIGEPSTQMTLN 1224

Query: 1165 TFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKT 1208
            TFHLAGRGE+NVTLGIPRL+EIL  AS  I TP + CPL+  KT
Sbjct: 1225 TFHLAGRGELNVTLGIPRLKEILMTASDKISTPFMKCPLIKTKT 1268


>gi|225217045|gb|ACN85329.1| putative RNA polymerase A(I) large subunit [Oryza brachyantha]
          Length = 1138

 Score = 1023 bits (2645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/1103 (51%), Positives = 710/1103 (64%), Gaps = 79/1103 (7%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            CK+CGQ    CPGHFGHI+L  P++NPLLF  L  LL   CF CH F+ +R +V++   +
Sbjct: 65   CKSCGQHSVRCPGHFGHIELAKPLFNPLLFLSLKNLLHMTCFHCHKFRLNREQVDRYTDE 124

Query: 61   LELIIKGDIIAAKSLDLD---LPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            LEL++KGDI  AK+L+     +  E  +  ++   +KS+CS              + + W
Sbjct: 125  LELLVKGDIAHAKNLEDSGGKVLLEEDDKTEATSGDKSTCS------------ESENKTW 172

Query: 118  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCN 177
            TS+Q  E       F+K    KC +C  KNP+IS P +GW+  +    A +RAN I    
Sbjct: 173  TSIQLKEVLSIFANFMKKRQKKCTHCNKKNPKISHPIYGWLIKDADISA-VRANAIADAK 231

Query: 178  L-GET-FSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQK 235
            L G+  F    E    G   ++ +P T S   T     +T           V S  KK  
Sbjct: 232  LSGDVRFHDSRETGVSGLDEELTSPGTSSRGST----NETRRISDDTIKEMVASSGKKH- 286

Query: 236  DLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPI 292
                  LL ++V+ I++ LW+NE   C  + D QQ       KK G+ +FFL  +LV P 
Sbjct: 287  ------LLATEVESILKDLWKNEARFCMLLCDFQQNTLNVSEKKRGYEMFFLKNLLVAPN 340

Query: 293  KFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLF 352
            +FR        +MEHPQ +LLSKV +AN+ L  +  N   N   ++ RWM++Q+SVNVL+
Sbjct: 341  RFRPSIHSSLGIMEHPQNILLSKVQEANLALQQS--NAASNHMEVLRRWMDMQRSVNVLY 398

Query: 353  DG-KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
            D  K  A     A+GI QLLEKKEG+ RQK+MGKRVNYACRSVISPDPYLAVNEIGIPP 
Sbjct: 399  DSSKGLAKNEKNANGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPV 458

Query: 412  FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLD 471
            FA RLTYPE+VTPWN  KL+++I NGA+IHPGATHY D  +  +L      R +I + L 
Sbjct: 459  FATRLTYPEKVTPWNARKLQEAINNGADIHPGATHYRDNNNMYKLQAAPAKRRAIAKMLP 518

Query: 472  TSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLR 531
             SRG+I Q GKD   EFE K+VYRHLQDGDVVLVNRQPTLHKPS+MAH VRVL GEKT+R
Sbjct: 519  ASRGSISQAGKDPKCEFESKVVYRHLQDGDVVLVNRQPTLHKPSMMAHFVRVLPGEKTIR 578

Query: 532  MHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIV 591
            MHYANCSTYNADFDGDEMNVHFPQDE+SRAEA NIV+AN QY+ P +GD +R LIQDHIV
Sbjct: 579  MHYANCSTYNADFDGDEMNVHFPQDEISRAEAINIVDANKQYIGPRSGDAVRGLIQDHIV 638

Query: 592  SAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWK 651
             A LLTK DTFL+R+E+ QL+Y S V SS   S   K G+++ I   +  + P+ PAIWK
Sbjct: 639  GAVLLTKLDTFLSREEYNQLVYGSCVFSSTRRS--AKFGKKISIIMDDDALEPVPPAIWK 696

Query: 652  PEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDF-FKTRFNADKQSDRKKNDKGKLS 710
            P+PLWTGKQVIT +LNH+T+G PPF V + GK+ +++    + +A + + RK +D    +
Sbjct: 697  PKPLWTGKQVITTILNHVTKGHPPFTVMQTGKISKEYLLPKKCDAVQFNKRKCDDAKDKT 756

Query: 711  KTNKMHKDKSG--KKKEVVEGKPGEEKEAEK--NKSKEKELSEEKLLIYKNDLVRGVIDK 766
            +  K HK   G   KK   +G   + K+ ++  N+ K ++ SE  L ++ N+L++G+IDK
Sbjct: 757  RDPKEHKKCDGIHVKKRKCDGSKDKTKDPKERGNEDKTRDRSELVLYVHDNELIKGMIDK 816

Query: 767  AQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKN 826
            AQF   G+VHTV ELYG + AG LLS+ SRLFT+ LQ HGFTCGVDDLL+ +  +  RK 
Sbjct: 817  AQFGKDGIVHTVHELYGPDAAGVLLSSFSRLFTMVLQFHGFTCGVDDLLLCQASDELRKE 876

Query: 827  HLHGSEEIGKRVHLEAL--------ELED---------------------------GAEI 851
             L  SEE  K VH E +        E ED                           G E 
Sbjct: 877  ILGTSEECSKIVHKEFICPQNKKGDEAEDTRPKEDGKAEDMCLKEDNEAEDTRSKEGVE- 935

Query: 852  DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
            D +KL+ E+E+ +R   ++A    D KM++ LN  T S V  EL   GL KP   N +SL
Sbjct: 936  DQVKLQMEVERVIRRNRESATVMLDRKMSNTLNVIT-SKVNQELFPYGLQKPFPGNCLSL 994

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            MT +GAKG  VN  QISS LGQQELEGKRVPRM+SGKTLP F  WD + RAGGFI DRFL
Sbjct: 995  MTQTGAKGGLVNMTQISSLLGQQELEGKRVPRMISGKTLPCFPSWDTSARAGGFISDRFL 1054

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK+LE LK+SYD++VRD DGSI+Q
Sbjct: 1055 TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKSLESLKVSYDHTVRDVDGSIIQ 1114

Query: 1032 FCYGEDGVDVHQTSFISKFDALA 1054
            FCYGEDGVDV +TSF+ KF  LA
Sbjct: 1115 FCYGEDGVDVLKTSFLDKFKELA 1137


>gi|302799457|ref|XP_002981487.1| hypothetical protein SELMODRAFT_233747 [Selaginella moellendorffii]
 gi|300150653|gb|EFJ17302.1| hypothetical protein SELMODRAFT_233747 [Selaginella moellendorffii]
          Length = 1578

 Score = 1000 bits (2586), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/1255 (44%), Positives = 736/1255 (58%), Gaps = 182/1255 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  Q  CPGHFGHI+LV+PV+NPLL+  L  + K +C FCHHFK  R++VE     
Sbjct: 60   CPTCGDMQLFCPGHFGHIELVMPVFNPLLYRSLVRIFKSVCVFCHHFKHERKKVEDACIA 119

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
            L  I+K  ++              NP                          +    TS 
Sbjct: 120  LTQIMKESVV-------------ENPSGG-----------------------RKMLITSG 143

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGE 180
             F + K  +  F K+  TKC +C  + P +     G +    +    + AN++ G     
Sbjct: 144  HFIQVKKIIEDFFKLPRTKCSSCGGQVPALRSEGHGKLFQQPLSSRHMSANMVSGHIF-- 201

Query: 181  TFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSG 240
                  ++    A+ D   PE+    G  P      A +  K S     G+      FS 
Sbjct: 202  -----RDQNAAAAAMDASVPES---KGKRP-----KADKFAKNSSIQAVGY------FSA 242

Query: 241  P--LLPSDVKDIIEKLWENEFELCSFISDMQQQGF----GKKAGHSIFFLGVVLVPPIKF 294
            P  LLPS+V+  +  LW NE +LCS I      G      +K G S+FFL  + V P +F
Sbjct: 243  PKILLPSEVRKHLSALWRNEEKLCSLIWGGVGTGKSPSPARKDGLSLFFLEALAVTPNRF 302

Query: 295  RLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDG 354
            R P+   + ++EHPQ  L   V++ NI L++        ++  +  W+ LQ +VN L D 
Sbjct: 303  RPPNYVNNQLLEHPQNKLYEVVVEKNIQLSDLITESGAKSEDGLRLWLELQNAVNELIDS 362

Query: 355  KN------------------AAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
                                A   +D   GI QLLEKK+GLFR  +MGKRVN+ CRSVIS
Sbjct: 363  TTGIFVSMMSYLQSFRFLCVAVAGKDRNVGIRQLLEKKQGLFRWNMMGKRVNHTCRSVIS 422

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PDP++AVNEIGIPP FA++LTYPE+VT +N  +LR ++ NG  +HPGATH  D+L     
Sbjct: 423  PDPFIAVNEIGIPPNFAVKLTYPEKVTAYNFERLRRNVENGPNVHPGATHVEDELG---- 478

Query: 457  PPNKKMRISI-----GRKLDTSRGAIVQPGKDSDNEFE-----GKMVYRHLQDGDVVLVN 506
                 +R+S+      +++ T++  +  PG  + +  +     GK VYRHLQDGD++L N
Sbjct: 479  -----VRVSLEYLKDWQRVATAKTLLSTPGATATDTIKKEKLIGKTVYRHLQDGDILLAN 533

Query: 507  RQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNI 566
            RQPTLHKP +M H  RV+KG++ LR+HYANCSTYNADFDGDEMNVHFPQDE+ RAEAY I
Sbjct: 534  RQPTLHKPGVMGHKARVIKGQRALRLHYANCSTYNADFDGDEMNVHFPQDELGRAEAYLI 593

Query: 567  VNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFT 626
            VNAN QY+ P++G+P+R LIQDHI+SA LLTKKDTFL ++E+ QL+YS+ V    L S T
Sbjct: 594  VNANQQYIVPTSGEPIRGLIQDHIISATLLTKKDTFLTKEEYHQLVYSACVPMPTLESAT 653

Query: 627  GKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQ 686
               G+ V    +   +  + PAIWKP  LW+GKQV+T +LN++TRGRPPF +ERG ++  
Sbjct: 654  FSKGRNVKTLDNHPAIETVPPAIWKPRCLWSGKQVLTTILNYVTRGRPPFSMERGIRVSG 713

Query: 687  DFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKE 746
            D+                                GK  E                     
Sbjct: 714  DYI-------------------------------GKTSE--------------------- 721

Query: 747  LSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHG 806
              E K+L+  ND + G+IDKAQF  +GLVHTVQELYG++ AG LLS  SRLFT +L MHG
Sbjct: 722  --ELKVLVRGNDFLCGIIDKAQFGKFGLVHTVQELYGADDAGHLLSVFSRLFTSYLFMHG 779

Query: 807  FTCGVDDLLILKDKERERKNHLHGSE-EIGKRVHLEALELEDG--AEIDPIKLKSEIEKA 863
            FTCG+ D+L+L   E ER   L  +E E+G  VH   + +ED   + +    +K    + 
Sbjct: 780  FTCGIADMLLLPGAEEERAAKLEPAENELGDIVHGRFVGVEDKQLSSVGIEAIKDMTGRI 839

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
            ++   DA  A  DM M+S +NK TS  V N L  +GL+KP  +N +SLMT +GAKG  VN
Sbjct: 840  LQLRADAGRARLDMLMSSAMNKVTSE-VNNALFPKGLVKPFPENCLSLMTVTGAKGGMVN 898

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
            F QISS LGQQELEGKRVPRMVSGKTLP F P++   R+GGFI DRFLTGLRPQEYY+HC
Sbjct: 899  FTQISSMLGQQELEGKRVPRMVSGKTLPCFQPYEPVARSGGFIKDRFLTGLRPQEYYYHC 958

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGR+GLVDTAVKT++SGYLQRC+IKNLECLKI+YD++VRDADGS++QF YGED VDV +
Sbjct: 959  MAGRDGLVDTAVKTAKSGYLQRCIIKNLECLKINYDFTVRDADGSVIQFFYGEDAVDVTK 1018

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELP 1103
            +S ++ FD +A         R+    K      +G  +     K    + + +AYI ++P
Sbjct: 1019 SSCLTNFDLMAT-------NRDLITQK------LGLGEHAKDVKNMKAIVSKDAYITDIP 1065

Query: 1104 DALKDNAEKFADKFLSNEMAK----------QDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
            +A++   EKF    LS E  K          ++   ++ HK+  SLA PGEPVG+LA QS
Sbjct: 1066 EAMEQKFEKFMGG-LSEEKKKAYKLYRRRHIKELRSVMTHKYFASLAAPGEPVGVLAGQS 1124

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKT 1208
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL EILT+ASK IKTP++TCPL  GKT
Sbjct: 1125 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLHEILTVASKAIKTPIMTCPLKPGKT 1179


>gi|145356916|ref|XP_001422669.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582912|gb|ABP00986.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1663

 Score =  881 bits (2276), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/1263 (41%), Positives = 706/1263 (55%), Gaps = 181/1263 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC     +C GHFGH++LVVPVYNPL F  +  LLK  CF CH F+     V +   +
Sbjct: 76   CVTCKFPGGMCAGHFGHLELVVPVYNPLTFGTVVRLLKTTCFHCHKFRLHASRVRRFRER 135

Query: 61   LELIIKGDIIAAKSLDLDLP--SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNL------ 112
            LE+++ GD+ AA+ +   LP  S+ +  E S V  +          + DN+ ++      
Sbjct: 136  LEMLMDGDMEAAEGV---LPEISKKAKEEMSSVFKEVEGDGDAEEMDLDNIHDVLPRLKT 192

Query: 113  ----KPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADI 168
                +P  WTS+    A+  + +FL I+  KC NC A NP++S      I    +P A  
Sbjct: 193  RGRGEPVVWTSITSTAARNLIKEFLAIQPKKCENCGAMNPKVSPEGHNKIFRGALPKAHH 252

Query: 169  RANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVP 228
              NL +G ++ +         D+ + S     ET S +            R Q+ +    
Sbjct: 253  ENNLAKGIDIND---------DMASDS-----ETMSVD-----------ERVQEAA---- 283

Query: 229  SGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI------SDMQQQGFGKKAGHSIF 282
                  K L+   + P + + ++++LW  E++ CS I      +   ++G  +++  + F
Sbjct: 284  ------KSLY---ITPIEARALLKRLWMYEYDFCSMIWATTPPNKCTKRGEERRSDPARF 334

Query: 283  FLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY-------VNQPDNAK 335
            F+  +LV P KFR PSK GD + +HPQ   L+ ++QAN+ LA  +             A 
Sbjct: 335  FIQTLLVAPSKFRPPSKMGDMIFDHPQNTALTTIIQANLSLAELFRTPPTVPEPPEVRAG 394

Query: 336  VIVARWMNLQQSVNVLFDGKNAAGQR-DMASGICQLLEKKEGLFRQKLMGKRVNYACRSV 394
              V  W+ LQ  VN L D   A  Q    A GI Q LEKKEGLFR  +MGKRVN+A RSV
Sbjct: 395  RAVRAWLALQSGVNRLIDATKADTQEAKQAIGIRQQLEKKEGLFRMNMMGKRVNFAARSV 454

Query: 395  ISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM 454
            ISPDPYL  +EIG+PP FA +LT+PE VTP NV  +R  + NG EIHPGA    D+   +
Sbjct: 455  ISPDPYLGTSEIGVPPVFAKKLTFPELVTPHNVDLMRTLVENGPEIHPGANAIEDERGRV 514

Query: 455  ----RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPT 510
                +    K+  I+      T+ G+   P +        K VYRHL+DGDV+LVNRQPT
Sbjct: 515  IHLDKFTAEKRAAIAKTLLATTAAGSADGPARPL-----AKTVYRHLRDGDVMLVNRQPT 569

Query: 511  LHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNAN 570
            LHKP I+AH  RVL G++ +RMHY+NCST+NADFDGDE+N+HFPQD + RAEAY I++ +
Sbjct: 570  LHKPGILAHTARVLPGQRVVRMHYSNCSTFNADFDGDEINLHFPQDHLGRAEAYEIMHGD 629

Query: 571  NQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPG 630
             Q+  P++G PLR LIQDHI S  LL+ +D+F +R EF QLLY      SGL  + G   
Sbjct: 630  RQFTVPTDGKPLRGLIQDHICSGLLLSMRDSFFDRSEFTQLLY------SGLVDYCGDEH 683

Query: 631  QRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             ++ +           PA+ KP+ LWTGKQVI AVL+HITRGRPP       K+P  FF 
Sbjct: 684  GKIDVP---------APALLKPKALWTGKQVIAAVLSHITRGRPPLTFSAPCKIPATFF- 733

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
                                                     G E   E           +
Sbjct: 734  -----------------------------------------GGEDSGE-----------D 741

Query: 751  KLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
            +L+I +N    GV+DK  F  YGLVH V EL+G +TAG LLS  SRLFT FLQ HGFTCG
Sbjct: 742  RLIIRRNYFCSGVVDKNMFGKYGLVHAVAELHGRSTAGALLSIFSRLFTNFLQKHGFTCG 801

Query: 811  VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI-KLKSEIEKAMRGGGD 869
            +DDL++  D E++R   L+ ++E+ K    +  E    ++ + +  + +++ +    G  
Sbjct: 802  IDDLILTADAEKDRVVELNKADEMCKTATADVAEASGKSDEEVMTAIAAKLLENPEWG-- 859

Query: 870  AAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISS 929
               A  DMK +  LNK TS++V  + L  G  KP  KN +S+MT SGAKGS VNF QI++
Sbjct: 860  ---AQLDMKASGALNKVTSATV-KKCLPFGTKKPFSKNCLSIMTISGAKGSLVNFSQIAA 915

Query: 930  HLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREG 989
             LGQQELEG+RVPRM SGKTLPSF P+D + RA G+I  RF +GL P EY+FHCMAGREG
Sbjct: 916  ALGQQELEGRRVPRMPSGKTLPSFEPFDISSRANGYIACRFFSGLDPAEYFFHCMAGREG 975

Query: 990  LVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISK 1049
            LVDTAVKT+RSGYLQRCL+KNLE +++ YD++VRD+DGSIVQF YGED VDV ++ ++ K
Sbjct: 976  LVDTAVKTARSGYLQRCLVKNLESMRVHYDFTVRDSDGSIVQFQYGEDCVDVTRSGYLEK 1035

Query: 1050 FDALAA--------RERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIME 1101
            F+ LA          E            K S    +GR +E+  + C   ++     +  
Sbjct: 1036 FEFLAENPELILLNNEAAISMLPKLNKKKVSVLETIGRKEEL-PRFC---MENFGDQLGV 1091

Query: 1102 LPDALKDNAEKFADK----FLSNEMAK--------------QDFLKLVKHKFVLSLAQPG 1143
            LP+   D  + F D     + + E  K              ++F  L+  +++  +A PG
Sbjct: 1092 LPEKFGDELKTFIDSRPKGYWAEEKGKKNESSLAAKSGLTAEEFAMLMNMRYLTYVAPPG 1151

Query: 1144 EPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            E VG++A+QSVGEPSTQMTLNTFH AGRGE NVTLGIPRL+E+L  ASK + TPV+  PL
Sbjct: 1152 EAVGVIAAQSVGEPSTQMTLNTFHFAGRGEANVTLGIPRLRELLMAASKKLLTPVMILPL 1211

Query: 1204 LVG 1206
              G
Sbjct: 1212 KPG 1214


>gi|302760347|ref|XP_002963596.1| hypothetical protein SELMODRAFT_438401 [Selaginella moellendorffii]
 gi|300168864|gb|EFJ35467.1| hypothetical protein SELMODRAFT_438401 [Selaginella moellendorffii]
          Length = 1588

 Score =  872 bits (2254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1019 (48%), Positives = 623/1019 (61%), Gaps = 165/1019 (16%)

Query: 238  FSGP--LLPSDVKDIIEKLWENEFELCSFISDMQQQGF--GKKAGHSIFFLGVVLVPPIK 293
            FS P  LLPS+V+  +  LW NE +LCS I      G    +K G S+FFL  + V P +
Sbjct: 275  FSAPKILLPSEVRKHLSALWRNEEKLCSLIWGGVGTGKSPARKDGLSLFFLEALAVTPNR 334

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD 353
            FR P+   + ++EHPQ  L   V++ NI L++        ++  +  W+ LQ +VN L D
Sbjct: 335  FRPPNYVNNQLLEHPQNKLYEVVVEKNIQLSDLITESGAKSEDGLRLWLELQNAVNELID 394

Query: 354  GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
                AG +D   GI QLLEKK+GLFR  +MGKRVN+ CRSVISPDP++AVNEIGIPP FA
Sbjct: 395  STTVAG-KDRNVGIRQLLEKKQGLFRWNMMGKRVNHTCRSVISPDPFIAVNEIGIPPNFA 453

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISI-----GR 468
            ++LTYPE+VT +N  +LR ++ NG  +HPGATH  D+L          +R+S+      +
Sbjct: 454  VKLTYPEKVTAYNFERLRRNVENGPNVHPGATHVEDELG---------VRVSLEYLKDWQ 504

Query: 469  KLDTSRGAIVQPGKDSDNEFE-----GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRV 523
            ++ T++  +  PG  + +  +     GK VYRHLQDGD++L NRQPTLHKP +M H  RV
Sbjct: 505  RVATAKTLLSTPGATATDTIKKEKLIGKTVYRHLQDGDILLANRQPTLHKPGVMGHKARV 564

Query: 524  LKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLR 583
            +KG++ LR+HYANCSTYNADFDGDEMNVHFPQDE+ RAEAY IVNAN QYV P++G+P+R
Sbjct: 565  IKGQRALRLHYANCSTYNADFDGDEMNVHFPQDELGRAEAYLIVNANQQYVVPTSGEPIR 624

Query: 584  SLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL--GSFTGKPGQRVLISRSEQE 641
             LIQDHI+SA LLTKKDTFL ++E+ QL+YS+ V    L  GSF+     + L +    E
Sbjct: 625  GLIQDHIISATLLTKKDTFLTKEEYHQLVYSACVPMPTLESGSFSKGRNVKTLDNHPAIE 684

Query: 642  VLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDR 701
             +P  PAIWKP  LW+GKQV+T +LN++TRGRPPF +ERG ++  D+             
Sbjct: 685  TVP--PAIWKPRCLWSGKQVLTTILNYVTRGRPPFSMERGIRVSGDYI------------ 730

Query: 702  KKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVR 761
                               GK  E                       E K+L+  NDL+ 
Sbjct: 731  -------------------GKTSE-----------------------ELKVLVRGNDLLC 748

Query: 762  GVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKE 821
            G+IDKAQF  +GLVHTVQELYG++ AG LLS  SRLFT +L MHGFTCG+ D+L+L   E
Sbjct: 749  GIIDKAQFGKFGLVHTVQELYGADDAGHLLSVFSRLFTSYLFMHGFTCGIADMLLLPGAE 808

Query: 822  RERKNHLHGSE-EIGKRVHLEALELED---------------------GAEIDPIKLKSE 859
             ER   L  +E E+G  VH   + +ED                     G  I+ I  K  
Sbjct: 809  EERAAKLEPAENELGDIVHGRFVGVEDKKLSSKRKKVYIALVLTCTSIGVGIEAI--KDM 866

Query: 860  IEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKG 919
              K ++  GDA  A  DM M+S +NK T S V N L  +GL+KP  +N +SLMT +GAKG
Sbjct: 867  TGKILQLRGDAGRARLDMLMSSAMNKVT-SEVNNALFPKGLVKPFPENCLSLMTVTGAKG 925

Query: 920  SKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEY 979
              VNF QISS LGQQELEGKRVPRMVSGKTLP F P++   R+GGFI DRFLTGLRPQEY
Sbjct: 926  GMVNFTQISSMLGQQELEGKRVPRMVSGKTLPCFQPYEPVARSGGFIKDRFLTGLRPQEY 985

Query: 980  YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ-FCYGEDG 1038
            Y+HCMAGR+GLVDTAVKT++SGYLQRC+IKNLECLKI+YD++ RD    I Q    GE  
Sbjct: 986  YYHCMAGRDGLVDTAVKTAKSGYLQRCIIKNLECLKINYDFTNRDL---ITQKLGLGEHA 1042

Query: 1039 VDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAY 1098
             DV                                     +N + I  K        +AY
Sbjct: 1043 KDV-------------------------------------KNMKAIVSK--------DAY 1057

Query: 1099 IMELPDALKDNAEKFADKF---------LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLL 1149
            I ++P+A++   EKF             L      ++   ++ H +  SLA PGEPVG+L
Sbjct: 1058 ITDIPEAMEQKFEKFIGGLSEGKKKAYKLYRRRHIKELRSVMTHTYFASLAAPGEPVGVL 1117

Query: 1150 ASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKT 1208
            A QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL EILT+ASK IKTP++TCPL  GKT
Sbjct: 1118 AGQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLHEILTVASKAIKTPIMTCPLKPGKT 1176



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 47/70 (67%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG  Q  CPGHFGHI+LV+PV+NPLL+  L  + K +C FCHHFK  R++VE     
Sbjct: 117 CPTCGDMQLFCPGHFGHIELVMPVFNPLLYRSLVRIFKSVCVFCHHFKHERKKVEDACIA 176

Query: 61  LELIIKGDII 70
           L  I+K  ++
Sbjct: 177 LTQIMKESVV 186


>gi|255087754|ref|XP_002505800.1| predicted protein [Micromonas sp. RCC299]
 gi|226521070|gb|ACO67058.1| predicted protein [Micromonas sp. RCC299]
          Length = 1616

 Score =  845 bits (2184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1235 (40%), Positives = 670/1235 (54%), Gaps = 142/1235 (11%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC      CPGHFGHI+L VPVYNPL F  +  LL+ +C  CH FK     V    RK
Sbjct: 53   CATCRLSAMHCPGHFGHIELAVPVYNPLTFGTVVRLLRGMCLHCHRFKMGADRVAAYSRK 112

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
            ++LI  GD+ AA  +     S+      +++           R   D         WT+ 
Sbjct: 113  MQLIRAGDLNAAAEISTVGVSKQVREAIAELEEDG-----LGRDVADVDTTADRVVWTTN 167

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGE 180
               E++  +  FL     KC NC   +P+++      I+   + +    AN   G +L  
Sbjct: 168  SMVESRDLIRNFLASVPAKCENCGCCSPKVTPEGANKIYRQALTNKQREANASLGIDLDG 227

Query: 181  TFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSG 240
              +  +++      S   +      +      + +  ++ +  +    +G    K +F  
Sbjct: 228  ELADSDDDGSGSDDSSDSSVSDSDSDSGGSDEKKSEKKKVRVDNATQQAG----KQVF-- 281

Query: 241  PLLPSDVKDIIEKLWENEFELCSFI--SDMQQQGFGKKAGHSI--------FFLGVVLVP 290
             + P + + ++++LW  E++ CS +  +     G  K A   I        FF+  VLV 
Sbjct: 282  -ITPIEARALLKRLWAREYDFCSMVWAAAPPTHGLTKGAKDPIVNRSDPARFFMQTVLVT 340

Query: 291  PIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY-------VNQPDNAKVIVARWMN 343
            P K R PS+ GD + EHPQ   L+ ++QAN+ LA  +             A+  V  W+ 
Sbjct: 341  PCKLRPPSRMGDMMFEHPQNTHLNAIIQANLTLAELFRKPPTVPEPPEVRAQRAVRAWLT 400

Query: 344  LQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
            LQ  VN L D     G+     GI Q LEKK+GLFR  +MGKRVNYA RSVI PDPYL  
Sbjct: 401  LQSGVNKLIDSSREGGEAG-GPGIRQQLEKKQGLFRMNMMGKRVNYAARSVIMPDPYLRT 459

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMR 463
            +EIG+PP FA +LT+PE VT  NV  +R  + NG EIHPGA    D+   +         
Sbjct: 460  SEIGVPPVFAKKLTFPEHVTEHNVDLMRKLVENGPEIHPGANAIEDERGRV--------- 510

Query: 464  ISIGRKLDTSRGAIVQ-----PGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
            I + R     R AI +     P   S +    K VYRHL+DGDV+LVNRQPTLHKP IMA
Sbjct: 511  IHLDRFTAEKRAAIAKTLLAAPAPVSGSRPLAKKVYRHLRDGDVLLVNRQPTLHKPGIMA 570

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H  +VL G++T+RMHYANC TYNADFDGDEMN+HFPQD ++RAEAY IV A+ QY  P++
Sbjct: 571  HTAKVLPGQRTIRMHYANCKTYNADFDGDEMNLHFPQDHLARAEAYEIVRADQQYTVPTD 630

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            G PLR LIQDH+V+  LLTK+DTFL+R+E  Q LYS+ V  +      G        +R 
Sbjct: 631  GSPLRGLIQDHVVAGVLLTKRDTFLDREEMRQALYSALVDYADEDKGGGS-------ARG 683

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
                +P  PAI  P  LWTGKQVI+AVL+HIT GRP   +  G K+P +++         
Sbjct: 684  HSITVP-PPAIVHPRELWTGKQVISAVLDHITHGRPDMTMSHGCKVPANYW--------- 733

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND 758
                                             G E   E            + ++ KN 
Sbjct: 734  ---------------------------------GGENSGEG-----------EFILRKNY 749

Query: 759  LVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILK 818
            +  G++DK  F + GLVH V EL+G   AG LLS LSRL TV+LQ  G TCG+DDL++  
Sbjct: 750  VCCGIVDKNTFGNKGLVHAVAELHGRVLAGDLLSVLSRLLTVWLQKWGMTCGLDDLILTP 809

Query: 819  DKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMK 878
            + E  R   L  +    +       E ++      ++ +     A R G +   A  DM+
Sbjct: 810  EAEVGRAEELAKAAAACRSAAATFAEADENVPDAALQQQIAARLAEREGAE---AILDMR 866

Query: 879  MTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEG 938
             +  LNK TS++V  + L  G  KP  KN +SLMT SGAKGS VNF QI++ LGQQELEG
Sbjct: 867  SSGALNKITSAAV-TKCLPHGTKKPFPKNCLSLMTQSGAKGSMVNFSQIAACLGQQELEG 925

Query: 939  KRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTS 998
            +RVPRM+SGKTLP F P+D + RAGG+I DRF +GLRPQEY+FHCMAGREGLVDTAVKT+
Sbjct: 926  RRVPRMISGKTLPCFQPFDLSQRAGGYIEDRFFSGLRPQEYFFHCMAGREGLVDTAVKTA 985

Query: 999  RSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALA---- 1054
            RSGYLQRC+IKNLE L++ YD++VRD DGS+VQF YGEDG DV ++S+ S F  LA    
Sbjct: 986  RSGYLQRCMIKNLETLRVHYDHTVRDCDGSVVQFQYGEDGADVTKSSYASDFQFLADNAE 1045

Query: 1055 -----ARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDN 1109
                  RE   GR   K           G + +   K   G ++             +  
Sbjct: 1046 LVKANLREAEAGRAEGK-----------GASIKADLKSVKGVVE-------------RKP 1081

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
             EK         + +++F +L+ ++++  LA PGE VG +A QSVGEPSTQMTLNTFH A
Sbjct: 1082 PEKKQSLVAQAGVTREEFKRLMNYRYLNQLAAPGEAVGCIAGQSVGEPSTQMTLNTFHFA 1141

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            GRGE NVTLGIPRL+E+L  A+K + TPV+T PLL
Sbjct: 1142 GRGEANVTLGIPRLRELLMAAAKKLATPVMTLPLL 1176


>gi|384501317|gb|EIE91808.1| hypothetical protein RO3G_16519 [Rhizopus delemar RA 99-880]
          Length = 1668

 Score =  833 bits (2151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/1307 (39%), Positives = 713/1307 (54%), Gaps = 237/1307 (18%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q  F CPGHFGHI++ +P YNP+ F+ LY LL+  C +CH F+ SR  ++K   +
Sbjct: 81   CATCSQDHFNCPGHFGHIEIPIPAYNPMFFDNLYALLRSKCVYCHQFRISRALMKKYTAQ 140

Query: 61   LELIIKGDIIAAKSLD---LDLPSESSNPEDSDVSNK---SSCSMVTPRGNYDNVRN--- 111
            L L+  G I  A+SLD   LD    S   ED  + ++   SS S+ T     D V N   
Sbjct: 141  LTLLQHGLINQAQSLDEIVLDFKKASEAKEDETLEDRMEESSLSLSTAEEYIDYVDNFMK 200

Query: 112  --LKPQEWTSLQFAEAKLALLQ---------FLK--IETTKCGNCKAKNPRISKPTFGWI 158
              L  +E       + K+ ++          F+K  I + KCGNC      IS P     
Sbjct: 201  DALADEEARKYAAQDYKVTVINDVRKNVMRDFMKHCIHSKKCGNCHG----ISPP----- 251

Query: 159  HMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAAR 218
                          +R     + F     +KD                            
Sbjct: 252  --------------VRRDGAAKLFQLALNKKD-----------------------QAVMD 274

Query: 219  RHQKGSGAVPSGFKKQKDLFSGP--LLPSDVKDIIEKLWENEFELCSFI---SDMQQQGF 273
            R ++ +G+    F + K   +G   L P +V+  ++ L+E E E+ + +    D +   F
Sbjct: 275  RMKESTGS----FGEIKGFINGQRFLTPYEVRKDVQALFEKEGEITTLLFGARDPRVPSF 330

Query: 274  GKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIY-------LANA 326
             KKA + +FF+ V+ V P +FR PS  GD   E PQ  LLS +L+ +         L  A
Sbjct: 331  IKKATYHMFFIEVLAVAPTRFRPPSVMGDKTFESPQNELLSAILKGSHLVRDFSEELQAA 390

Query: 327  YVNQP-DNAKVIVAR------WMNLQQSVNVLFDG-KN----AAGQRDMASGICQLLEKK 374
               +P D  KV V R       +NLQ +VN   D  KN    A GQ ++  GI Q LEKK
Sbjct: 391  SEEEPVDKKKVEVTRNRFVDSIINLQHAVNSFIDSTKNPTQVAQGQ-NLPPGIRQALEKK 449

Query: 375  EGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSI 434
            EGLFR+ +MGKRVNYA RSVISPDP++  +EIGIPP FA +LTYPE VTP N+ ++R ++
Sbjct: 450  EGLFRKHMMGKRVNYAARSVISPDPFIETSEIGIPPVFATKLTYPEPVTPHNIKEMRQAV 509

Query: 435  INGAEIHPGATHY------LDKLSTMRLPPNKKMRISIGRKLDTSRGA-IVQPGKD---S 484
            ING    PGATH       +D L  + +    + RI++   L   + +   Q G +   +
Sbjct: 510  INGPNKWPGATHVQNEDQSIDVLGDLSI----ESRIALANSLLAPQSSHTAQSGNNPFPT 565

Query: 485  DNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADF 544
              +   K V+RHL++GD++L+NRQPTLHKPSIMAH  RVL GEKT+RMHYANC+TYNADF
Sbjct: 566  RTQTINKKVFRHLRNGDMLLLNRQPTLHKPSIMAHKARVLPGEKTIRMHYANCNTYNADF 625

Query: 545  DGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLN 604
            DGDEMN+HFPQ+E++RAEA  I N +NQY+ P++GDPLR LIQD++ S   ++ +DTF N
Sbjct: 626  DGDEMNIHFPQNEIARAEAALIANTDNQYLVPTSGDPLRGLIQDNVDSGVWMSSRDTFFN 685

Query: 605  RDEFCQLLYSS---GVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQV 661
            R+E+ QLLY S    V  +G G     P                 P I KPEPLWTGKQV
Sbjct: 686  REEYHQLLYGSLRPEVDGTGGGKIRTLP-----------------PTILKPEPLWTGKQV 728

Query: 662  ITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSG 721
            I+ ++ ++T G+    +    K+   F+                                
Sbjct: 729  ISTIIKNLTWGKAQLNMTSKSKVAAKFW-------------------------------- 756

Query: 722  KKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQ 779
                               K +EK L      I   +L+ GV+DK+QF  + +GLVH++ 
Sbjct: 757  ---------------GPNAKDEEKVL------IVDGELMHGVMDKSQFGASAFGLVHSIY 795

Query: 780  ELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVH 839
            E+YG  +AG LLS LSRLF  F+Q HGFTC +DDL++ KD ++ R++ L     +G   H
Sbjct: 796  EIYGPESAGMLLSILSRLFIKFIQSHGFTCRMDDLILTKDGDKWRRDLLDNGVGLGSEAH 855

Query: 840  LEALELEDGA-----EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINE 894
            LE L L + A     E+   + K  + + +R   D  +A  D  M +++NK T SS+  +
Sbjct: 856  LEFLGLAETAQTATPEVLAKEFKLRMNEVIR--DDNKLAGLDNAMKAKVNKLT-SSITQK 912

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
             L +GL++P  KN + +MT SGAKGS VN  QIS  LGQQELEG+RVP MVSG++LPSF 
Sbjct: 913  CLPDGLVRPFPKNDMQMMTVSGAKGSNVNATQISCLLGQQELEGRRVPLMVSGRSLPSFR 972

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
            P+D + RAGGF+  RFLTG+RPQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL+K+LE L
Sbjct: 973  PFDTSARAGGFVTGRFLTGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGL 1032

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFD-----------------ALAARE 1057
            ++ YD++VRD+DGS++QF YGED +DV +   I++F                  ALA+ E
Sbjct: 1033 RVHYDHTVRDSDGSVLQFHYGEDSLDVIKAKHINQFSFSAHNFESLSQKYHPKAALASLE 1092

Query: 1058 RGRGRGRNK--------------FCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELP 1103
              +G    K                + G+H  V+     +  K+          Y+ + P
Sbjct: 1093 IKQGEEYAKKALKKPGKYDPALSVYNPGTHLGVVSERFALAMKE----------YVEKNP 1142

Query: 1104 DAL--KDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQM 1161
            DA+  +  +E   +      + K  F  L+  K++ SL +PGE VG+LA+QSVGEPSTQM
Sbjct: 1143 DAMPFEKGSESSKNTARYAGLTKNKFKALMNLKYLHSLVEPGEAVGILAAQSVGEPSTQM 1202

Query: 1162 TLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKT 1208
            TLNTFH AG G  NVTLGIPRL+EI+  A++ IKTP +  PL    T
Sbjct: 1203 TLNTFHFAGYGAANVTLGIPRLREIIMTAARKIKTPTMLLPLCAETT 1249


>gi|384247373|gb|EIE20860.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Coccomyxa subellipsoidea C-169]
          Length = 1671

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/1304 (39%), Positives = 693/1304 (53%), Gaps = 234/1304 (17%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    CPGHFGHI+L VPVYNPL+F  +Y LL+  C  C   K  + EVE+  RK
Sbjct: 66   CATCNQGYMSCPGHFGHIELAVPVYNPLVFTTMYKLLRCTCLHCFKLKMLQTEVEQYKRK 125

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNP-----------EDSDVSNKSSCSMVTPRGNYDNV 109
            LEL+ +G ++ A  +     S ++              D + + + S             
Sbjct: 126  LELLAEGKLVEAMHVVTGGSSATAKAVEKIGAKLAGLGDVEAAERRSSHAAASTSAASAH 185

Query: 110  RNLKPQEWTSLQFAEAKLALLQFLK-IETTKCGNCKAKNPRISKPTFGWIHMNGMPHADI 168
            R    ++ TSL     +  + +F + +   +C NC A  P + +     +    +    +
Sbjct: 186  R----EKMTSLSLEAIRETVGEFFRRMPVQQCANCGAHAPVLKRDGCAKVFQKPLDFKKV 241

Query: 169  RANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVP 228
              N  +G  +        + ++L         + H     F                   
Sbjct: 242  EKNRSKGIEVTSALKTSRKNENLN--------QLHVHRPRF------------------- 274

Query: 229  SGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI----SDMQQQGFGKKA------- 277
                         +  ++V++++ ++W    +  S +    S ++  GF   A       
Sbjct: 275  -------------MTVAEVREVMRRMWTRNADALSLMYAQDSRLRIFGFSAGAGGAQPGA 321

Query: 278  ---GHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN-------AY 327
                +++FFL VV V P + R PS  GD+  EHP  + L++++ AN+ L +       A 
Sbjct: 322  FEDAYNMFFLQVVPVAPNRVRPPSFIGDAAFEHPHNIALTRIINANLELVSQAAEPVGAT 381

Query: 328  VNQPDNAKVI--------VARWMNLQQSVNVLFDGKNAA-GQRDMASGICQLLEKKEGLF 378
               P+N  V+        +  W+ LQ  VN L D   A  G +    GI Q LEKKEGLF
Sbjct: 382  EKIPENRVVLRQKGLADSLRTWLALQGHVNSLLDSTTAGPGAKGDVQGIRQQLEKKEGLF 441

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRVN+A RSVISPDPYLA  EIG+PPYFA+RL++PERVTPWNV +LR+ +I GA
Sbjct: 442  RKNMMGKRVNFAARSVISPDPYLAAGEIGVPPYFAVRLSFPERVTPWNVAELREMVIRGA 501

Query: 439  EIHPGATHYLDKLSTM----RLPPNKKMRISIGRKLDTSRGAIVQPGKD--------SDN 486
              HPGA    D+L  +    +LP N++  ++   KL  S+  + + G          S  
Sbjct: 502  HEHPGAVAVEDELGRVILLHKLPLNRREAVA---KLLLSKAGMEEAGARGRKIGSPVSGG 558

Query: 487  EFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDG 546
               GK+VYRHL+DGD++L NRQPTLHKP +MAH  RVLKGE+ +RMHYANC+T+NADFDG
Sbjct: 559  SGAGKIVYRHLRDGDLLLTNRQPTLHKPGLMAHRARVLKGERVIRMHYANCATFNADFDG 618

Query: 547  DEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRD 606
            DE+N+H PQD   RAE Y IV+A+ QY+ P++G P+R LIQDH+V    LTK+DTFL R 
Sbjct: 619  DEINLHLPQDNHGRAEGYGIVHADEQYIVPTDGKPVRGLIQDHVVGGVKLTKRDTFLTRS 678

Query: 607  EFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL 666
            +F QL+Y+    +        +PG   L   ++ +V P  P IWKP+PLWTGKQ    + 
Sbjct: 679  DFMQLVYACCSPA--------RPG---LKDVTDLQVPP--PTIWKPQPLWTGKQASHLLT 725

Query: 667  NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEV 726
               T G PP  +  G K+P DF+                                     
Sbjct: 726  YIFTLGMPPLTLRAGTKVPADFW------------------------------------- 748

Query: 727  VEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNT 786
              GK G   E              K+L+   +LV GV+DKA F  +GLVH VQ+LYG+  
Sbjct: 749  --GKGGTSGEG-------------KMLVVNGELVTGVLDKAVFGKFGLVHAVQDLYGNAV 793

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE 846
            AG+ +SALSRL T FLQM GFTCG DDLL++K  ER R   L  +E           E+ 
Sbjct: 794  AGSFISALSRLLTYFLQMQGFTCGYDDLLLVKRAERARTELLDTAETAALAASARFEEVW 853

Query: 847  DGAEIDPIKLKSEIEKAM----RGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLK 902
            +G        +  I+KA+    R   +A   + D   T+ L+    S V+   L +G  K
Sbjct: 854  EGT-------RGAIQKALAQRYRQSKEAGAGH-DAVATAALHP-LGSDVVKVCLPDGQQK 904

Query: 903  PTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ---------ELEGKRVPRMVSGKTLPSF 953
            P   N +SLMT SGAKGS VNF QIS+ LGQQ         ELEG+RVPRM SGKTLP F
Sbjct: 905  PFPLNCLSLMTVSGAKGSNVNFSQISALLGQQACTSLPLLPELEGRRVPRMASGKTLPCF 964

Query: 954  HPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLEC 1013
             P+D   R+GGFI DRFLTGLRPQEYYFHCMAGREGLVDT VKTSRSGYLQRCLIKNLE 
Sbjct: 965  APFDPGARSGGFIGDRFLTGLRPQEYYFHCMAGREGLVDTTVKTSRSGYLQRCLIKNLEP 1024

Query: 1014 LKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSH 1073
            L+I YD+++     SIVQF YGEDG+DV   SF+ +F  LA       R  ++F  +   
Sbjct: 1025 LRIHYDHTLV-VRRSIVQFAYGEDGIDVTARSFMREFGFLA-------RNADRFTQQ--- 1073

Query: 1074 TFVMGRNQEMIYKKCS-GQLD--ASNAYIM-ELP-DALKDNAEKFADKFLS--------- 1119
              V     E   +  S GQ++  A +A +  +LP  AL   +E F D   S         
Sbjct: 1074 --VDPAGAERASRLSSLGQVNKAARDAPLTADLPLTALGVTSEAFQDALGSFVRSNPEGV 1131

Query: 1120 -------------------NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQ 1160
                                  + + F +L++ KF+ +LA PGE VG+LA QS+GEPSTQ
Sbjct: 1132 LQSAAKKAAEADAAAASDLAPRSPEGFARLMELKFLRALAAPGEAVGVLAGQSIGEPSTQ 1191

Query: 1161 MTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            MTLNTFH+AGRGE NVTLGIPRL+E+L  A++ IKTP++T P+L
Sbjct: 1192 MTLNTFHMAGRGEANVTLGIPRLRELLMTAAQSIKTPIMTLPML 1235


>gi|303289108|ref|XP_003063842.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454910|gb|EEH52215.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1665

 Score =  825 bits (2132), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/1275 (40%), Positives = 684/1275 (53%), Gaps = 179/1275 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC      CPGHFGHI+L VPVYNPL F+++  LL+  C  C  FK +   V     K
Sbjct: 72   CATCRLGAMHCPGHFGHIELAVPVYNPLTFSVVVRLLRSACLHCGKFKLAADRVAAYREK 131

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPE---------DSDVSNKSSCSMVTPRGNY----D 107
            L LI +GD+  A ++D+   S+ +  E         D    + +  S V P  +     D
Sbjct: 132  LRLIREGDLEGAANVDVHGVSKQTRAELNEIREMVGDLGTMDTTHVSRVIPVAHQGRRKD 191

Query: 108  NVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHAD 167
             VR      WTS     ++  + +FL     KC NC   +P++S      I+   +    
Sbjct: 192  RVR------WTSHAMMLSRDLVKEFLAATPGKCENCGVCSPKVSPEGANKIYRAALTKKQ 245

Query: 168  IRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAV 227
            I                 E    L  S D++       +G   G  D   R      G  
Sbjct: 246  I-----------------EHNAALTPSVDLEEELRRGLSGPDRGDDDAEPRE----DGED 284

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
             +G ++Q  +F   + P + + +++KLW NE++  S +       +  K   + FF+  V
Sbjct: 285  LAGQERQ--VF---ITPIEARSMLKKLWANEYDFVSMVWVANAPSYDAKTDPARFFMQTV 339

Query: 288  LVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY-------VNQPDNAKVIVAR 340
            LV P +FR PSK  D + EHPQ   L+ ++QAN+ LA  +             A+  V  
Sbjct: 340  LVTPCRFRPPSKMNDMMFEHPQNTHLNAIIQANLTLAELFRKPPTVPEPPEVRAQRAVRA 399

Query: 341  WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
            W+ LQ  VN L D   A G      GI Q LEKK+GLFR  +MGKRVNYA RSVI PDPY
Sbjct: 400  WLTLQGGVNRLVDSSKAEGGEAGGMGIRQQLEKKQGLFRMNMMGKRVNYAARSVIMPDPY 459

Query: 401  LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK 460
            L  +EIG+PP FA +LT+PE VT  NV  +R  + NG +IHPGA    D+   +      
Sbjct: 460  LKTSEIGVPPVFAKKLTFPENVTAHNVELMRQLVENGPDIHPGANAIEDERGRV------ 513

Query: 461  KMRISIGRKLDTSRGAIVQP----------------------GKDSDNEFEGKMVYRHLQ 498
               I + R     R AI +                       G  +  +     V+RHL+
Sbjct: 514  ---IHLDRFTAEKRAAIAKTLLATPATTTGEATAAAAGMSLGGAAAKAKTPASKVFRHLR 570

Query: 499  DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
            DGDV+LVNRQPTLHKP IMAH  +VL G++T+RMHYANCSTYNADFDGDEMN+HFPQD +
Sbjct: 571  DGDVLLVNRQPTLHKPGIMAHTAKVLPGQRTIRMHYANCSTYNADFDGDEMNLHFPQDHL 630

Query: 559  SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
            +RAEAY IV A+ QY  P++G PLR LIQDHI +  L+T +DTFL++ +F QL+Y + V 
Sbjct: 631  ARAEAYEIVRADQQYTVPTDGKPLRGLIQDHICAGVLMTCRDTFLDKSDFTQLMYLALVD 690

Query: 619  SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVV 678
             +G      + G   ++ +S   + P  PAI KP  LWTGKQ+ TAV+ HIT        
Sbjct: 691  FAG-----AETGGGAVVGKS---LKPPAPAIRKPRALWTGKQLFTAVIEHITH------- 735

Query: 679  ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 738
               G+ P                       +S   K+  +  G          GE+    
Sbjct: 736  ---GRAPM---------------------TVSHATKVPANYWG----------GEDS--- 758

Query: 739  KNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLF 798
                      E  L++ +N +  G++DK  F  +GLVH V EL+G   AG  +S L+RL 
Sbjct: 759  ---------GEGVLVVRRNYVCSGILDKNTFGAHGLVHAVAELHGKVLAGDFISVLTRLL 809

Query: 799  TVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKS 858
            T FLQ HG TCG+DDL++ ++ ER R+  LH +    +       E +    +  + L+ 
Sbjct: 810  TAFLQRHGMTCGMDDLILHEESERGREEELHKATAACRGAAAAFAEAD--VNVPEMALRK 867

Query: 859  EIEKAM--RGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSG 916
            +I   +  R G +AA    DM+ +  L K TS++V    L  G  KP  KN +SLMT SG
Sbjct: 868  QIAARLSEREGAEAA---LDMRSSGALAKVTSATV-KRCLPHGTKKPFPKNCLSLMTQSG 923

Query: 917  AKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRP 976
            AKGS VNF QI++ LGQQELEG+RVPRM+SGKTLP F P D + RAGG++ DRF +GLRP
Sbjct: 924  AKGSMVNFSQIAACLGQQELEGRRVPRMISGKTLPCFPPHDTSERAGGYVSDRFFSGLRP 983

Query: 977  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE 1036
            QEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE L++ YD++VRD DGSIVQF YG+
Sbjct: 984  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLETLRVHYDHTVRDCDGSIVQFHYGD 1043

Query: 1037 DGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTF-VMGRNQEMIYKKCSGQLDA- 1094
            D VDV +  ++ KF  LA       R      +K      V+    E   K  SG+  A 
Sbjct: 1044 DAVDVTKGGYLEKFQFLADNPE-LLRANLAAAEKDIAALRVIDEADEDEEKDASGKHPAL 1102

Query: 1095 --------SNAYIMELPDALKDNAEKFADKFLS---------------NEMAKQDFLKLV 1131
                    SNA +  LP+  KDN + F  +                  + M   +F +L+
Sbjct: 1103 PVMSSRPLSNA-LGTLPERFKDNLDAFIQRADPAAAAAAAKPPGLPALSGMTADEFKRLM 1161

Query: 1132 KHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIAS 1191
              +++ +LA PGE VG +A+QSVGEPSTQMTLNTFH AGRGE NVTLGIPRL+E+L  AS
Sbjct: 1162 NLRYLSALASPGEAVGCVAAQSVGEPSTQMTLNTFHFAGRGEANVTLGIPRLRELLMAAS 1221

Query: 1192 KDIKTPVITCPLLVG 1206
            K + TPV+T PL  G
Sbjct: 1222 KKLATPVMTLPLRDG 1236


>gi|448509658|ref|XP_003866188.1| Rpa190 RNA polymerase I subunit A190 [Candida orthopsilosis Co
            90-125]
 gi|380350526|emb|CCG20748.1| Rpa190 RNA polymerase I subunit A190 [Candida orthopsilosis Co
            90-125]
          Length = 1651

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1280 (39%), Positives = 680/1280 (53%), Gaps = 196/1280 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L VPVYNP+ FN LY  L+  C +CHHFK S  EV     K
Sbjct: 62   CTTCGLDEKFCPGHMGHIELPVPVYNPMFFNQLYIFLRSSCLYCHHFKLSHLEVHLFKCK 121

Query: 61   LELIIKGDIIAAKSLDLDLPS-----ESSN-----PEDSDVSNKSSCSMVTPRGNY---- 106
            L+LI  G ++    L+  +P+     E SN      E + V  K+   ++  R  +    
Sbjct: 122  LQLIQYGLLLECTELENIMPAGKSAKEMSNDDEEEEEGASVDEKTKKKLMETRERFVKNA 181

Query: 107  -----DNVRNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISKPTFGWIH 159
                  + R       T+    E K  +  F +  +   KC NC   +P   K  F  I 
Sbjct: 182  ISAALKDGRTSAKGVITASVGEERKATIHDFYRRLLSRPKCSNCGMYSPSFRKDGFTKIF 241

Query: 160  MNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGT-QDTAAR 218
             N +    I  N +RG                     +  P+    NG+   T  D    
Sbjct: 242  ENSLNDKQITNNRVRG---------------------LQRPDMIRKNGSSNSTASDIPNI 280

Query: 219  RHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCS--FISDMQQQGFGKK 276
            +H+ GS  V               L S+V++II  +++NE  +    F S   Q+ +   
Sbjct: 281  KHKGGSKYV---------------LSSEVRNIIRAVFKNEQAVLQKVFHSRPHQREY--- 322

Query: 277  AGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA--NAYVNQPDNA 334
                IFF   +LVPP +FRLPSK GD + E+ Q  LLS +L+  + +A  N  ++Q   A
Sbjct: 323  VSGDIFFKQSILVPPTRFRLPSKLGDEIHENAQNELLSNILKTTVLIADLNTQISQMYEA 382

Query: 335  K-------VIVARWMN----LQQSVNVLFDG---KNAAGQRDMASGICQLLEKKEGLFRQ 380
            K       +   R MN    LQ  VN   D    +NA   +    GI Q LEKKEGLFR+
Sbjct: 383  KLSGEQKKIAFNRLMNSFVTLQNDVNAFIDSTKNQNAPAGKVPNPGIKQALEKKEGLFRK 442

Query: 381  KLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEI 440
             +MGKRVNYA RSVISPDP L  NEIG+PP FA +LTYPE VT  N  +LR +IING E 
Sbjct: 443  HMMGKRVNYAARSVISPDPNLETNEIGVPPVFARKLTYPEPVTSHNAAELRQAIINGPEK 502

Query: 441  HPGATHYLDKLSTM--RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQ 498
             PGA    ++  ++   +    + R ++  +L T  G+         N F GK VYRH++
Sbjct: 503  WPGAVQIQNEDGSLISLIGMGLEQRKALANQLLTPTGS---------NSFVGKKVYRHIK 553

Query: 499  DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
            + DVV++NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFDGDEMN+HFPQ+E 
Sbjct: 554  NKDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQNEN 613

Query: 559  SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
            ++AEA N+ N ++QY+ P++G PLR LIQDHI +   LT KDTF  R+ + QL+Y     
Sbjct: 614  AKAEALNLANTDSQYLTPTSGSPLRGLIQDHISAGVWLTSKDTFFTRETYQQLIY----- 668

Query: 619  SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVV 678
                G    + G     +RS    LP  PAI+KPE LWTGKQVIT +L +I     P V 
Sbjct: 669  ----GCIRPEDGH---TTRSRLITLP--PAIYKPELLWTGKQVITTILLNIKPDNVPGV- 718

Query: 679  ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 738
                                          L   NK+  D  G                 
Sbjct: 719  -----------------------------NLISKNKIKNDYWG----------------- 732

Query: 739  KNKSKEKELSEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALS 795
                   E S E  +I+KN +L+ G++DK+Q+  + +G+VH++ E+YG   AG  LS L 
Sbjct: 733  -------EHSTENEVIFKNGELLSGILDKSQYGASQFGIVHSLHEVYGPEVAGKALSVLG 785

Query: 796  RLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIK 855
            RLFT ++ M  FTCG+DDL + +D    RKN L  S ++G++   E   L +    +  +
Sbjct: 786  RLFTNYIMMTAFTCGMDDLRLTEDGNAWRKNILKQSVDVGRQAATEVTNLSEDTANNNKE 845

Query: 856  LKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTS 915
            L+  +E+ +R   D  +   D    S++N  T S V+++ + EG +K    N +  M  S
Sbjct: 846  LRRRLEEILR--DDDKLGILDAITQSKVNAIT-SQVVSKCVPEGTMKKFPYNSMQAMALS 902

Query: 916  GAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLR 975
            GAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF  ++   RAGG+I  RF +G+R
Sbjct: 903  GAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKAFETDARAGGYIKQRFYSGIR 962

Query: 976  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYG 1035
            PQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + ++YD SVRD DG+++QF YG
Sbjct: 963  PQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVNYDNSVRDGDGTLIQFLYG 1022

Query: 1036 EDGVDVHQTSFISKF-------DALAAR----------ERGRGRGRNKFCDKG--SHTFV 1076
             D +D  + S +++F       DAL A+          +  +    +K   K       V
Sbjct: 1023 GDSIDTTKQSHMNQFEFCLENYDALLAKYNPGEMVENLDTSKALSYSKKVRKSMKKQKDV 1082

Query: 1077 MGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFA----DKFL-SNEMAK------- 1124
                QE+ Y       + +  Y+  + +  ++  +KF     D F  S E AK       
Sbjct: 1083 PHYEQEIKYDPVINTYNPAK-YLGSVSEKFQEKMDKFVSSNPDFFAQSKEEAKSTGKLTE 1141

Query: 1125 QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
            + F  L++ K++ SL  PGE VG++ASQS+GEPSTQMTLNTFH AG G  NVTLGIPR++
Sbjct: 1142 KKFRALMQLKYMRSLVNPGESVGIIASQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMR 1201

Query: 1185 EILTIASKDIKTPVITCPLL 1204
            EI+  AS  IKTP +T P+L
Sbjct: 1202 EIIMTASAAIKTPQMTLPIL 1221


>gi|384492991|gb|EIE83482.1| hypothetical protein RO3G_08187 [Rhizopus delemar RA 99-880]
          Length = 1612

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1300 (38%), Positives = 689/1300 (53%), Gaps = 270/1300 (20%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q  F CPGHFGHI++ +P YNP+ F                              
Sbjct: 63   CATCSQDHFNCPGHFGHIEIPIPAYNPMFF------------------------------ 92

Query: 61   LELIIKGDIIAAKSLD---LDLPSESSNPEDSDVSNK---SSCSMVTPRGNYDNVRN--- 111
                   D   A+SLD   LD    +   ED  + ++   SS S+ T     D V N   
Sbjct: 93   -------DNFQAQSLDEIVLDFKKANEAKEDETLEDRMEESSLSLSTAEEYIDYVDNFMK 145

Query: 112  --LKPQEWTSLQFAEAKLALLQ---------FLK--IETTKCGNCKAKNPRISKPTFGWI 158
              L  +E       + K+ ++          F+K  I + KCGNC      IS P     
Sbjct: 146  DALADEEARKYAAKDYKVTVINDVRKNVMRNFMKHCIHSKKCGNCHG----ISPP----- 196

Query: 159  HMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAAR 218
                          +R     + F     +KD      +                     
Sbjct: 197  --------------VRRDGAAKLFQLALNKKDQAVMDRM--------------------- 221

Query: 219  RHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI---SDMQQQGFGK 275
            +   GS     GF   +      L P DV+  ++ L+E E E+ + +    D +   F K
Sbjct: 222  KESTGSFGELKGFANGQRF----LTPYDVRKDVQALFEKEGEITTLLFGARDPRVPSFIK 277

Query: 276  KAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIY-------LANAYV 328
            KA + +FF+ V+ V P +FR PS  G+   E PQ  LLS +L+ +         L  A  
Sbjct: 278  KATYHMFFIEVLAVAPTRFRPPSVMGEKTFESPQNELLSAILKGSHLVRDFSEELQAASQ 337

Query: 329  NQP-DNAKVIVAR------WMNLQQSVNVLFDG-KN----AAGQRDMASGICQLLEKKEG 376
             +P D  K+ + R       +NLQ +VN   D  KN    A GQ ++ +GI Q+LEKKEG
Sbjct: 338  EEPVDKKKLEITRNRFVDSIINLQHAVNSFIDSTKNPTQVAQGQ-NLPAGIRQVLEKKEG 396

Query: 377  LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
            LFR+ +MGKRVNYA RSVISPDP++  +EIGIPP FA +LTYPE VTP N+ ++R ++IN
Sbjct: 397  LFRKHMMGKRVNYAARSVISPDPFIETSEIGIPPVFATKLTYPEPVTPHNIKEMRQAVIN 456

Query: 437  GAEIHPGATHY------LDKLSTMRLPPNKKMRISIGRKLDTSRGA-IVQPGKD---SDN 486
            G    PGATH       +D L  + +    + RI++   L   + +  VQ G +   +  
Sbjct: 457  GPNKWPGATHVQNEDQSIDVLGDLSI----ESRIALANSLLAPQSSHTVQSGNNPFPTRT 512

Query: 487  EFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDG 546
            +   K V+RHL++GD++L+NRQPTLHKPSIMAH  RVL GEKT+RMHYANC+TYNADFDG
Sbjct: 513  QTINKKVFRHLRNGDMLLLNRQPTLHKPSIMAHKARVLPGEKTIRMHYANCNTYNADFDG 572

Query: 547  DEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRD 606
            DEMN+HFPQ+E++RAEA  I N +NQY+ P++GDPLR LIQD++ S   ++ +DTF NR+
Sbjct: 573  DEMNIHFPQNEIARAEAALIANTDNQYLVPTSGDPLRGLIQDNVDSGVWMSSRDTFFNRE 632

Query: 607  EFCQLLYSS---GVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVIT 663
            E+ QLLY S    V  +G G     P                 P I KPEPLWTGKQVI+
Sbjct: 633  EYHQLLYGSLRPEVDGTGGGKIRTLP-----------------PTILKPEPLWTGKQVIS 675

Query: 664  AVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKK 723
             ++ ++T G+    +    K+   F+                                  
Sbjct: 676  TIIKNLTWGKAQLNMTSKSKVAAKFW---------------------------------- 701

Query: 724  KEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQEL 781
                             K +EK L      I   +L+ GV+DK+QF  + +GLVH++ E+
Sbjct: 702  -------------GPNAKDEEKVL------IVDGELMHGVMDKSQFGASAFGLVHSIYEI 742

Query: 782  YGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLE 841
            YG  +AG LLS LSRLF  F+Q HGFTC +DDL++ KD ++ R++ L     +G   HLE
Sbjct: 743  YGPESAGMLLSILSRLFIKFIQSHGFTCRMDDLILTKDGDKWRRDLLDNGVGLGSEAHLE 802

Query: 842  ALELEDGA-----EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELL 896
             L L + A     E+   + K  + + +R   D  +A  D  M +++NK T SS+  + L
Sbjct: 803  FLGLAETAQTATPEVLAKEFKLRMNEVIR--DDNKLAGLDNAMKAKVNKLT-SSITQKCL 859

Query: 897  SEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPW 956
             +GL++P  KN + +MT SGAKGS VN  QIS  LGQQELEG+RVP MVSG++LPSF P+
Sbjct: 860  PDGLVRPFPKNDMQMMTVSGAKGSNVNATQISCLLGQQELEGRRVPLMVSGRSLPSFRPF 919

Query: 957  DWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKI 1016
            D + RAGGF+  RFLTG+RPQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL+K+LE L++
Sbjct: 920  DTSARAGGFVTGRFLTGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLRV 979

Query: 1017 SYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFD-----------------ALAARERG 1059
             YD++VRD+DGS++QF YGED +DV +   I++F                  ALA+ E  
Sbjct: 980  HYDHTVRDSDGSVLQFHYGEDSLDVIKAKHINQFSFSAHNFEALSQKYHPKAALASLEIK 1039

Query: 1060 RGRGRNK--------------FCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDA 1105
            +G    K                + G+H  V+     +  K+          Y+ + PDA
Sbjct: 1040 QGEEYAKKALKKPGKYDPALSVYNPGTHLGVVSERFALAMKE----------YVEKNPDA 1089

Query: 1106 L--KDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTL 1163
            +  +  +E   +      + K  F  L+  K++ SL +PGE VG+LA+QSVGEPSTQMTL
Sbjct: 1090 MPFEKGSESSKNTARYAGLTKNKFKALMNLKYLHSLVEPGEAVGILAAQSVGEPSTQMTL 1149

Query: 1164 NTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            NTFH AG G  NVTLGIPRL+EI+  A++ IKTP +  PL
Sbjct: 1150 NTFHFAGYGAANVTLGIPRLREIIMTAARKIKTPTMLLPL 1189


>gi|367017944|ref|XP_003683470.1| hypothetical protein TDEL_0H04000 [Torulaspora delbrueckii]
 gi|359751134|emb|CCE94259.1| hypothetical protein TDEL_0H04000 [Torulaspora delbrueckii]
          Length = 1665

 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1291 (37%), Positives = 687/1291 (53%), Gaps = 199/1291 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L VP YNPL FN LY  L+  C FCHHF+  + EV +   K
Sbjct: 62   CSTCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRSCCLFCHHFRLKKVEVHRYACK 121

Query: 61   LELIIKGDIIAAKSLD-------------------LDLPSESSNPE--DSDVSNKSSCSM 99
            L+L+  G I  +  LD                    D   ESSN +    ++S      +
Sbjct: 122  LKLLQYGLIDESYRLDQISVAGFEYLEDDEDDEAAEDNAMESSNTKKPSKNISAALLKEL 181

Query: 100  VTPRGNYDNV---------RNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNP 148
            +  R  + N+         R  +   +T+    E K  +  F +  +   KC NC   +P
Sbjct: 182  IQKRTEFVNLEIAKALSEGRTSERGTFTATTNDERKKLIHDFHRRALSRAKCDNCGMFSP 241

Query: 149  RISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGT 208
            +  K  F  I    +    +  N ++G    +     ++ K LG S + DA +   FN  
Sbjct: 242  KFRKDGFTKIFETALTDKQLTNNRVKGLIRQDMIKKQQQSKKLGGSDEGDAVD-EDFNA- 299

Query: 209  FPGTQDTAARRHQKGSGAVP-SGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISD 267
                         + S A P SG        S  +L ++V++I+  L++ E  +  ++  
Sbjct: 300  ------------DRNSSARPKSG--------STYILSTEVRNILRALFKKEQHVLQYVFH 339

Query: 268  MQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY 327
             +     K      FF+ VVLVPP +FRLPSK G+ V E+ Q  LLSK+L  ++ + +  
Sbjct: 340  SRPNVSRKVVKADNFFMEVVLVPPTRFRLPSKMGEEVHENTQNQLLSKILTTSLLIRDLN 399

Query: 328  VNQP---------DNAKVIVARWMN----LQQSVNVLFDGKNAAGQRDM---ASGICQLL 371
                         D+ +VI +R MN    +Q  VN   D   A G         G+ Q L
Sbjct: 400  DEMSTIQKDKVSVDDRRVIFSRLMNAFVTIQNDVNAFIDSTKAQGSASSKIPVPGVKQAL 459

Query: 372  EKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLR 431
            EKKEGLFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA +LTYPE VT +N+ +LR
Sbjct: 460  EKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTAYNIAELR 519

Query: 432  DSIINGAEIHPGATHYLDKLSTMRLPPNKKMRIS-IGRKLDTSRG---AIVQPGKDSDNE 487
             ++ING +  PGA+   ++  T+         +S +G  L+  +     ++ P  +    
Sbjct: 520  QAVINGPDKWPGASQIQNEDGTL---------VSLVGMTLEQRKALANQLMTPSSNVSTH 570

Query: 488  FEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGD 547
               K VYRH+++ DVVL+NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFDGD
Sbjct: 571  PLNKKVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGD 630

Query: 548  EMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDE 607
            EMN+HFPQ+E +RAEA+N+ N ++QY+ P++G P+R LIQDHI +   LT KD+F  R+E
Sbjct: 631  EMNMHFPQNENARAEAFNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREE 690

Query: 608  FCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLN 667
            + Q +Y         G    + G       S  +++ + PA+ KP PLWTGKQ+I+ VL 
Sbjct: 691  YQQYIY---------GCIRPEHGH-----ASRGKIVTMPPAVLKPVPLWTGKQIISTVLL 736

Query: 668  HITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVV 727
            ++T    P +                               L   NK+  +  GK     
Sbjct: 737  NVTPADMPGI------------------------------NLESNNKIKNEYWGKG---- 762

Query: 728  EGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGS 784
                                S E  +I+KN +LV G++DK+Q+  + YG+VH++ E+YG 
Sbjct: 763  --------------------STENDVIFKNGELVCGILDKSQYGASKYGIVHSLHEVYGP 802

Query: 785  NTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALE 844
              A  +LS L RLFT ++    FTCG+DDL +  +  + R   L  S +IG++   E   
Sbjct: 803  EVAAKVLSVLGRLFTNYITATAFTCGMDDLRLTAEGNKSRSEILKTSIDIGRQAAAEVTN 862

Query: 845  LEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPT 904
            L+     D ++L   +E+ +R    + +   D   +S++N  T S V++  + +G +K  
Sbjct: 863  LDKDTPSDDVELLKRLEEILRDENKSGI--LDAVTSSKVNTVT-SKVVSTCVPDGTMKKF 919

Query: 905  GKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGG 964
              N +  M  SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++    AGG
Sbjct: 920  PYNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDSMAGG 979

Query: 965  FIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD 1024
            +I  RF +G++PQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + ISYD SVRD
Sbjct: 980  YIKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNSVRD 1039

Query: 1025 ADGSIVQFCYGEDGVDVHQTSFISKFD----------------ALA-----------ARE 1057
             DGS++QF YG D VDV + S +++FD                ALA           +++
Sbjct: 1040 GDGSLIQFLYGGDAVDVTKESHMTQFDFCRENYDALLKKYNPVALAEHLDVETALQYSKK 1099

Query: 1058 RGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKF---- 1113
              + R +N    K +H       Q++ Y     + + +  Y+  + +   D  E +    
Sbjct: 1100 VSKNRKKNS---KTAH-----YEQKVKYDPVLAKYNPAK-YLGSVSEKFHDKLESYLEDK 1150

Query: 1114 ADKFLSNE-MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRG 1172
            A +F S E ++ + F  L++ K++ SL  PGE VG++ASQSVGEPSTQMTLNTFH AG G
Sbjct: 1151 AKEFKSRESVSAKRFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHG 1210

Query: 1173 EMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
              NVTLGIPR++EI+  AS  IKTP +T P+
Sbjct: 1211 AANVTLGIPRMREIIMTASSAIKTPQMTLPI 1241


>gi|354545083|emb|CCE41808.1| hypothetical protein CPAR2_803580 [Candida parapsilosis]
          Length = 1670

 Score =  777 bits (2006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1281 (39%), Positives = 680/1281 (53%), Gaps = 196/1281 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L VPVYNP+ FN LY  L+  C +CHHFK S  EV     K
Sbjct: 62   CTTCGLDEKFCPGHMGHIELPVPVYNPMFFNQLYIFLRSSCLYCHHFKLSHLEVHLFKCK 121

Query: 61   LELIIKGDIIAAKSLDLDLPS------ESSNPEDSD-----VSNKSSCSMVTPRGNY--- 106
            L+LI  G ++    L+  +P+       S+N ED +     V  K+   ++  R  +   
Sbjct: 122  LQLIQYGLLLECSELENIMPAGKSAKEMSNNDEDEEDEGVSVDAKTKKELMERREEFVKN 181

Query: 107  -------DNVRNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISKPTFGW 157
                   D   N K     S+   E K  +  F +  +   KC NC   +P   K  F  
Sbjct: 182  AISAALKDGRTNAKGIITASVG-EERKEVIHGFYRRLLSRPKCSNCGMYSPSFRKDGFTK 240

Query: 158  IHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAA 217
            I  N +    I  N +RG    +     ++     +S+  D P                 
Sbjct: 241  IFENSLNDKQITNNRVRGLQRPDMI---KKNGSSNSSAASDIPNI--------------- 282

Query: 218  RRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCS--FISDMQQQGFGK 275
             +H+ GS  V               L S+V++II  +++NE  +    F S   Q  +  
Sbjct: 283  -KHKGGSKYV---------------LSSEVRNIIRAVFKNEQPVLQKVFHSRPYQHEY-- 324

Query: 276  KAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA--NAYVNQPDN 333
                 IFF   +LVPP +FRLPSK GD + E+ Q  LLS +L+  + +A  N  ++Q   
Sbjct: 325  -VSGDIFFKQSILVPPTRFRLPSKLGDEIHENAQNELLSNILKTTVLIAELNTQISQMYE 383

Query: 334  A-------KVIVARWMN----LQQSVNVLFDG---KNAAGQRDMASGICQLLEKKEGLFR 379
            A       K+   R MN    LQ  VN   D    +NA   +    GI Q LEKKEGLFR
Sbjct: 384  AKLSGEQKKIAFNRLMNSFVTLQNDVNAFIDSTKNQNAPAGKVPNPGIKQALEKKEGLFR 443

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
            + +MGKRVNYA RSVISPDP L  NEIG+PP FA +LTYPE VT  N  +LR ++ING E
Sbjct: 444  KHMMGKRVNYAARSVISPDPNLETNEIGVPPVFAKKLTYPEPVTSHNAAELRQAVINGPE 503

Query: 440  IHPGATHYLDKLSTM--RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
              PGA    ++  ++   +  + + R ++  +L T  G+         N F GK VYRH+
Sbjct: 504  KWPGAVQIQNEDGSLISLIGMSLEQRKALANQLLTPTGS---------NSFVGKKVYRHI 554

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            ++ DVV++NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFDGDEMN+HFPQ+E
Sbjct: 555  KNKDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQNE 614

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
             ++AEA N+ N ++QY+ P++G PLR LIQDHI +   LT KD+F  R+ + QL+Y    
Sbjct: 615  NAKAEALNLANTDSQYLTPTSGAPLRGLIQDHISAGVWLTSKDSFFTRETYQQLIY---- 670

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
                 G    + G     +RS    LP  PAI+KPE LWTGKQVIT +L +I     P V
Sbjct: 671  -----GCIRPEDGH---TTRSRLVTLP--PAIFKPEMLWTGKQVITTILLNIKPDNVPGV 720

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEA 737
                                           L   NK+  D  G                
Sbjct: 721  ------------------------------NLISKNKIKNDYWG---------------- 734

Query: 738  EKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSAL 794
                    E S E  +I+KN +L+ G++DK+Q+  + +G+VH++ E+YG   AG  LS L
Sbjct: 735  --------EHSTENEVIFKNGELLSGILDKSQYGASQFGIVHSLHEVYGPEVAGKALSVL 786

Query: 795  SRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
             RLFT ++ M  FTCG+DDL + +D    RK+ L  S ++G++   E   L D    D  
Sbjct: 787  GRLFTNYIMMTAFTCGMDDLRLTEDGNVWRKDILKSSVDVGRQAATEVTNLPDDTGNDNK 846

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
            +L+  +E+ +R   D  +   D    S++N  T S V+++ + EG +K    N +  M  
Sbjct: 847  ELRRRLEEILR--DDDKLGILDAITQSKVNAIT-SQVVSKCVPEGTMKKFPYNSMQAMAL 903

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF  ++   RAGG+I  RF +G+
Sbjct: 904  SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKAFETDARAGGYIKQRFYSGI 963

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
            RPQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + ++YD SVRD DG+++QF Y
Sbjct: 964  RPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVNYDNSVRDGDGTLIQFLY 1023

Query: 1035 GEDGVDVHQTSFISKF-------DALAAR----------ERGRGRGRNKFCDKG--SHTF 1075
            G D +D  + S +++F       DAL A+          +  +    +K   K       
Sbjct: 1024 GGDSIDTTKQSHMNQFEFCLENYDALLAKYNPGDMVENLDTTKALSYSKKVRKSLKKQKD 1083

Query: 1076 VMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKF-----LSNEMAK------ 1124
            V    QE+ Y       + +  Y+  + +  ++  +KF          S E AK      
Sbjct: 1084 VPHYEQEIKYDPVINTYNPAK-YLGSVSEKFQEKMDKFVTSHPELFAQSKEEAKSTGKLT 1142

Query: 1125 -QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRL 1183
             + F  L++ K++ SL  PGE VG++ASQS+GEPSTQMTLNTFH AG G  NVTLGIPR+
Sbjct: 1143 EKKFRALMQLKYMRSLINPGESVGIIASQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRM 1202

Query: 1184 QEILTIASKDIKTPVITCPLL 1204
            +EI+  AS  IKTP +T P+L
Sbjct: 1203 REIIMTASAAIKTPQMTLPIL 1223


>gi|213407078|ref|XP_002174310.1| DNA-directed RNA polymerase I subunit RPA1 [Schizosaccharomyces
            japonicus yFS275]
 gi|212002357|gb|EEB08017.1| DNA-directed RNA polymerase I subunit RPA1 [Schizosaccharomyces
            japonicus yFS275]
          Length = 1657

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1281 (38%), Positives = 697/1281 (54%), Gaps = 192/1281 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC   +  CPGHFGHI L VP Y+PL F  +Y+LL+  C +CHHFK S+  V     +
Sbjct: 63   CATCHMDERYCPGHFGHITLPVPAYHPLFFPQMYSLLRATCLYCHHFKLSKVTVHLFACR 122

Query: 61   LELIIKGDIIAAKSLD-------------LDLPSESSNPEDSDVSN----KSSCSMVTPR 103
             +L+  G +I ++ ++                  E S  EDS + N    K + +++  R
Sbjct: 123  FKLLDHGLLIESQRVESITLGNSVSSKSSGGKDGEGSESEDSGIGNDDMAKDAAALMRLR 182

Query: 104  GNYDNVRNLKPQEWTSLQFAEAK---LALLQFLKIETTK-CGNCKAKNPRISKPTFGWI- 158
                        E+     A+AK   L    F  I + K C NC++ +P   K  F  I 
Sbjct: 183  -----------DEFVDKCIADAKKIKLVRAFFHAINSRKQCDNCQSFSPTFRKEGFAKIF 231

Query: 159  -------HMNGMPHAD-IRANLIR----GCNLGETFSGGEEEKDLGASSDVDAPETHSFN 206
                   ++  M     IR+N++R         E FS  E+    G   D+D  E     
Sbjct: 232  EVPLTGKNLQYMEQTGRIRSNVLRDSAKSSKDDEGFS--EDSNSEGEGDDIDLMEED--- 286

Query: 207  GTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFIS 266
               P   D   ++    +  + S               ++V++ + +L+  E  + S + 
Sbjct: 287  ---PNPFDKKLKKRSTEAKYMTS---------------TEVRNHLRRLFTKEGRVMSLLF 328

Query: 267  DMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN- 325
              ++   GK A   +FFL  + VPP +FR  SK GD V E+ Q  LL+K+LQ++I +A+ 
Sbjct: 329  AHKK---GKPASADMFFLHNIAVPPTRFRPASKMGDEVHENIQNELLTKILQSSIRIADL 385

Query: 326  -AYVNQPDNAKV----------IVARWMNLQQSVNVLFD-GKN---AAGQRDMASGICQL 370
             A  +   + +           +VA ++ LQ  VN L D G+N    A  R    GI Q+
Sbjct: 386  SAATHATGDKEAMERGSRAFEQLVAAFVQLQHDVNSLIDSGRNPTVMAQGRVPPPGIKQI 445

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            LEKKEGLFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA++LT+PE VTP+N  +L
Sbjct: 446  LEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTFPEPVTPYNYNEL 505

Query: 431  RDSIINGAEIHPGATHYLDKLSTM--RLPPNKKMRISIGRKLDTSRGAIVQ-PGKDSDNE 487
            R ++ING    PGATH  ++  T+   +P   + R ++  +L T +  I+  P   S   
Sbjct: 506  RKAVINGPSKWPGATHIQNEDGTLVSLMPLTVEQRTALANQLMTPQSNIISSPYSYSRIV 565

Query: 488  FEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGD 547
               K V+RH+++GD++++NRQPTLHKPS+M H  R+L GEKT+RMHYANC++YNADFDGD
Sbjct: 566  NTNKKVFRHVRNGDMLILNRQPTLHKPSMMCHKARILPGEKTIRMHYANCNSYNADFDGD 625

Query: 548  EMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDE 607
            EMN+HFPQ   +RAEA  I N ++QY+ P++GDP+R LIQDH+V    LT KD+F  RDE
Sbjct: 626  EMNMHFPQSMNARAEAQFIANTDSQYLVPTSGDPIRGLIQDHVVMGVWLTNKDSFFTRDE 685

Query: 608  FCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV-L 666
            + QLL+ +            KP +  +  R    +  + PA+ +P+P++TGKQ+IT + L
Sbjct: 686  YQQLLFQA-----------LKPDESGMYGR----IKTVPPALIRPKPMYTGKQIITTILL 730

Query: 667  NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEV 726
            N     RP   ++   K+   ++                                     
Sbjct: 731  NLKPADRPGLNLKSKAKVASKYW------------------------------------- 753

Query: 727  VEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGS 784
                P  E+ A         L ++ +LI+      G++DK+ F  + +G+VH++ ELYG+
Sbjct: 754  ---SPTSEEGA--------VLFDDGVLIH------GILDKSSFGASTFGMVHSIHELYGA 796

Query: 785  NTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALE 844
            + AG LLS LSRLFT F QM GFTC +DDL + +  +  R+  L   ++ G   H + ++
Sbjct: 797  DIAGRLLSVLSRLFTAFAQMRGFTCRMDDLRLDERGDAWRRELLENGKDFGLLAHCDYVQ 856

Query: 845  LEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPT 904
            L      D   L + +E+ +R   D  +   D  M  ++N  T SS+IN+ + EGLL   
Sbjct: 857  LPIDTSRD--LLNANLEEVIR--DDEKLQGLDAAMKGKMNGLT-SSIINKCIPEGLLTKF 911

Query: 905  GKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGG 964
             KN +  MT SGAKGS VN  QIS  LGQQELEG+RVP MVSGK+LPSF P+D + +AGG
Sbjct: 912  PKNHMQAMTVSGAKGSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPSFLPFDTSAKAGG 971

Query: 965  FIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD 1024
            FI  RFLTG+ PQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL+K+LE L + YD++VRD
Sbjct: 972  FIASRFLTGMCPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLSVQYDHTVRD 1031

Query: 1025 ADGSIVQFCYGEDGVDVHQTSFISKFD-----------------ALAARERGRGRGRNKF 1067
            ADGS+VQF YGED +DV +   + +F+                  L+A +        K 
Sbjct: 1032 ADGSVVQFRYGEDALDVTKQKHLYQFEFSARNYKSLIQKYKVKSVLSAVDSDTASSYAKK 1091

Query: 1068 CDKGSHTF--VMGRNQEMIYKKCSGQ--LDASNAYIMELPDAL-KDNAEKFADKFLSNEM 1122
              K  H +  V+ +     Y     +    A + Y  + PD L     E   D  L NE 
Sbjct: 1092 ALKKPHKYDPVLDKYPPSRYLGSVSEKFQKAVDEYTKKNPDNLIASKKESKQDGTLLNE- 1150

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
                F  L++ ++  SL +PGE VG++ASQSVGEPSTQMTLNTFH AG G  NVTLGIPR
Sbjct: 1151 --SKFKALMQLRYQQSLVEPGEGVGVMASQSVGEPSTQMTLNTFHFAGFGAKNVTLGIPR 1208

Query: 1183 LQEILTIASKDIKTPVITCPL 1203
            L+EI+  AS  IKTP +T  L
Sbjct: 1209 LREIIMTASASIKTPTMTLRL 1229


>gi|392580430|gb|EIW73557.1| hypothetical protein TREMEDRAFT_26611 [Tremella mesenterica DSM 1558]
          Length = 1691

 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1299 (37%), Positives = 686/1299 (52%), Gaps = 183/1299 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C+TC    F CPGHFGHI L  PVY+PL     Y LL+ +C FCHHFK     + + + +
Sbjct: 63   CQTCHLSYFACPGHFGHIVLPNPVYHPLFMRECYILLQSVCQFCHHFKMPEILLRQYIGR 122

Query: 61   LELIIKGDIIAAKSLDLDLPSES------------SNPEDSDVSNKSSCSMVTPRGNY-- 106
            L L+  G +  +  +   LP  S                   VS +S+  ++     Y  
Sbjct: 123  LRLLDAGLVERSHDMAYFLPRTSKDDGDDDGEEGDEKTRADAVSAESAAELIVRMDGYVK 182

Query: 107  -----DNVRNLKPQEWTSLQFAEAKLALLQFLKIET--TKCGNCKAKNPRISKP-TFGWI 158
                    R+ K +    L F E + A   F+        C  C A      K  +   +
Sbjct: 183  SCLHEAKKRSGKEKYMDGLIFEERRKARNAFIAAAKGWRSCKRCSAHGFTYRKEKSIKIV 242

Query: 159  HMNGMPHADIRANLIRGCNLGETFSGG----------EEEKDLGASSDVDAPETHSFNGT 208
             ++  P      N + G    +    G          +E++++   SD       + NG 
Sbjct: 243  ELDLDPKKK-EVNKVLGVRRPQVIGSGSRSSHGSSSSDEDENIDVDSDEGVTVARAANGQ 301

Query: 209  FPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI--- 265
              G       R  +    +P+               S+V++ I  L+  E E+C+ +   
Sbjct: 302  IKG-------RRGRNERVMPA---------------SEVREHIGLLFSKESEMCNLLYGR 339

Query: 266  SDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN 325
            +   +          IFFL V+ V P +FR  SK GD + E+ Q  LL+ V+Q    + +
Sbjct: 340  NRNSKSNINCSPSADIFFLDVLPVTPTRFRPASKLGDELFENSQNSLLTAVIQTCRRIQD 399

Query: 326  AYVNQPDNAK---------------------VIVARWMNLQQSVNVLFDGKN----AAGQ 360
                  D  K                     +++   + +Q  VN   D         G 
Sbjct: 400  LNQRLHDQVKAERGEIVLDAIAKAEGSRTFELLLEALIKVQHDVNSFVDSTQNPTIMRGG 459

Query: 361  RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE 420
            +    G+ QLLEKKEGLFR+ +MGKRVNYA RSVISPD  +  NEIGIPP FA +LTYPE
Sbjct: 460  KLPPQGVKQLLEKKEGLFRKHMMGKRVNYAARSVISPDINIETNEIGIPPVFAKKLTYPE 519

Query: 421  RVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK---KMRISIGRKLDTSRGAI 477
             VT  N+ +LR  +ING ++HPGA    ++  T ++  +K   + R +I  +L T +   
Sbjct: 520  PVTAQNINELRQLVINGPKVHPGAALVQNEDGT-QVSLDKTTIEQRQAIANQLLTPQSDA 578

Query: 478  VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 537
               G  +      K VYRH++DGD+V++NRQPTLHKPS+MAH V+VL GEKT+RMHYANC
Sbjct: 579  YSAGSSAGPPARNKKVYRHIRDGDIVILNRQPTLHKPSMMAHKVKVLLGEKTIRMHYANC 638

Query: 538  STYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
            ++YNADFDGDEMN+HFPQ+EV+RAE+  I N +NQY+ P++G PLR LIQDH+V+   + 
Sbjct: 639  NSYNADFDGDEMNIHFPQNEVARAESLMIANTDNQYLVPTSGKPLRGLIQDHVVAGVWMC 698

Query: 598  KKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWT 657
             K +F  R+E+ QL+Y +  +                   ++  ++ L PAIWKP P+WT
Sbjct: 699  NKSSFFTREEYFQLIYGALRTEDNY--------------ITQNRIITLPPAIWKPRPMWT 744

Query: 658  GKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKG-KLSKTNKMH 716
            GKQ+I+ +L ++T                                 N KG  L+  NK+ 
Sbjct: 745  GKQIISTILTNLT-------------------------------PSNAKGLNLNSENKI- 772

Query: 717  KDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGL 774
                              K  +++ S ++ +SEE ++     L+ GV+DK+Q+  + YGL
Sbjct: 773  ----------------SNKLWQRDDSSDQTMSEENVIFLDGHLICGVLDKSQYGASAYGL 816

Query: 775  VHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEI 834
            VH+V ELYG  TA  LL  LSRL T +LQ   F+C +DDLL+  + E+ RK+ L  +   
Sbjct: 817  VHSVHELYGPVTANRLLGVLSRLLTKYLQHDAFSCRMDDLLLTAEGEKIRKSILDDAARD 876

Query: 835  GKRVHLEALELEDGAEID----PIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSS 890
            G+R  ++ + L  G+ +D       L + +E+ +R   D  +A  D  M +  NK T+S 
Sbjct: 877  GERAAIKYVGLPPGSSVDDPGTARNLVTRLEETLR--DDHLMAGLDAVMQTAFNK-TTSK 933

Query: 891  VINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTL 950
            + N++L + L++P   N + LMT SGAKGSKVN  QIS+ LGQQ LEG+RVP MVSGKTL
Sbjct: 934  INNDVLPKHLVRPFPDNNMQLMTISGAKGSKVNASQISTLLGQQALEGRRVPTMVSGKTL 993

Query: 951  PSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1010
            PSF P+D + RAGG++ +RFLTG+RPQEYYFHCMAGREGL+DTAVKTSRSGYLQRCLIK+
Sbjct: 994  PSFKPFDTSARAGGYVANRFLTGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLIKH 1053

Query: 1011 LECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAAR------ERGRGRG- 1063
            LE +K+ YD++VRD+D S++QF YGED +DV +   + KFD  AAR       R R R  
Sbjct: 1054 LEGVKVHYDHTVRDSDSSVLQFLYGEDSLDVTKAQHLGKFD-FAARNHESLLNRSRPRDV 1112

Query: 1064 -----RNKFCDKGSHTFVMGRNQE---MIYKKCSGQLDASNAYIMELPDALKDNAEKFAD 1115
                 +++  DK           E    ++         S  Y  +L   ++ N   F  
Sbjct: 1113 LPVVIQDEAVDKMKKALKKPHKHEPALSLFPPSRYLGSMSETYARKLATYIEQNRFGFIT 1172

Query: 1116 K--------FLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFH 1167
            K        + S  ++ ++FL+L + +++ SL +PGE VGLLASQ VGEPSTQMTLNTFH
Sbjct: 1173 KKGEIKSSPYTSERVSDKEFLQLARVRYMRSLVEPGEAVGLLASQGVGEPSTQMTLNTFH 1232

Query: 1168 LAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVG 1206
            LAG G  NVTLGIPRL+EI+  AS    TP +   L  G
Sbjct: 1233 LAGHGAANVTLGIPRLREIVMTASTKPITPTMKLALRPG 1271


>gi|308811186|ref|XP_003082901.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
 gi|116054779|emb|CAL56856.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
          Length = 1789

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/1135 (39%), Positives = 613/1135 (54%), Gaps = 172/1135 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC     +C GHFGHI+LVVPVYNPL F  +  LLK  CF CH F+     V +   +
Sbjct: 127  CVTCKYPGGMCDGHFGHIELVVPVYNPLTFGTVVRLLKTTCFHCHRFRMHESRVRRFRER 186

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQ----- 115
            LE+++ GD+  A+++  ++ S+ +  E S++  +          + DN+ ++ P+     
Sbjct: 187  LEMLMDGDVEGAENVMPEI-SKKAKKEMSEIWQEVEDDGDVEEMDLDNIHDVLPRLKTKG 245

Query: 116  -----EWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRA 170
                  WTS+    A+  + +FL I+  KC NC A NP++S      I    +       
Sbjct: 246  KNGPVAWTSVSSTAARELIKEFLSIQPKKCENCNAVNPKVSTEGHNKIFRGQIAKQAHLN 305

Query: 171  NLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQ----------------- 213
            NL  G N+       E+ + L   +  ++ ++H       G +                 
Sbjct: 306  NLANGININ------EDMQRLARQASAESADSHEGASKLAGAEVEPRLIPAKKKVRKRLG 359

Query: 214  -----------DTAARRHQKGSGA-------------------------VPSGFKKQKDL 237
                       +  +R   K  GA                         VP   ++ K L
Sbjct: 360  EGDESDESTDDEDGSRDKTKTGGAEGENSESTSDDSDNSDADEMSVDERVP---EQTKPL 416

Query: 238  FSGPLLPSDVKDIIEKLWENEFELCSFI-----SDMQQQGFG-KKAGHSIFFLGVVLVPP 291
            +   + P + + ++++LW NE++ CS I        + +G   +++  S FF+  +LV P
Sbjct: 417  Y---ITPIEARALLKRLWGNEYDFCSLIWATNGPSKKSKGLSERRSDPSRFFVQTLLVTP 473

Query: 292  IKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY-------VNQPDNAKVIVARWMNL 344
             KFR  SK GD + EHPQ   L+ ++QAN+ LA  +             A   V  W+ L
Sbjct: 474  SKFRPASKMGDMIFEHPQNTSLTTIIQANLSLAELFRTPPTVPEPPEVRAGRAVRAWLAL 533

Query: 345  QQSVNVLFDGKNAAGQR-DMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
            Q  +N L D   A  Q    A GI Q LEKKEGLFR  +MGKRVN+A RSVISPDPYL  
Sbjct: 534  QSGINRLIDATKADTQEAKQAIGIRQQLEKKEGLFRMNMMGKRVNFAARSVISPDPYLGT 593

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM----RLPPN 459
            +EIG+PP FA +LT+PE VTP NV  +R  + NG +IHPGA    D+   +    +    
Sbjct: 594  SEIGVPPVFAKKLTFPELVTPHNVDLMRTLVENGPDIHPGANAIEDERGRVIHLDKFTAE 653

Query: 460  KKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAH 519
            K+  I+      T+ G+   P +        K VYRHL++GDV+LVNRQPTLHKP I+AH
Sbjct: 654  KRAAIAKTLLATTASGSADGPARPL-----AKTVYRHLRNGDVMLVNRQPTLHKPGILAH 708

Query: 520  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNG 579
              RVL G++ +RMHY+NCST+NADFDGDE+N+HFPQD + RAEAY I++ + Q+  P++G
Sbjct: 709  TARVLPGQRVVRMHYSNCSTFNADFDGDEINLHFPQDHLGRAEAYEIMHGDRQFTVPTDG 768

Query: 580  DPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSE 639
             PLR LIQDHI S  +L+ +D FLNR EF QLLYS+ V   G              +   
Sbjct: 769  KPLRGLIQDHICSGLILSMRDRFLNRSEFTQLLYSALVDYCGE-------------THGT 815

Query: 640  QEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQS 699
             EV P  PA+ KP+ LWTGKQ+I A + HITRGRPP       K+P  FF          
Sbjct: 816  IEVPP--PALLKPQRLWTGKQLIGAAITHITRGRPPMTFSAPCKIPGTFF---------- 863

Query: 700  DRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDL 759
                                            G E   E           ++L+I +N  
Sbjct: 864  --------------------------------GGEDSGE-----------DRLVIRRNYF 880

Query: 760  VRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKD 819
              GV+DK  F  YGLVH V EL+G + AG LLS  +RLFT FLQ HGFTCG+DDL++ + 
Sbjct: 881  CTGVVDKNMFGKYGLVHAVAELHGRSVAGALLSIFTRLFTTFLQKHGFTCGIDDLILTEQ 940

Query: 820  KERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKM 879
             E++R + L  ++E  K    +  E    ++   ++    +   +R    A  A  DMK 
Sbjct: 941  AEQDRLDELEKADEACKTATADVAEATGKSDEQVMR---AVAAKLRENA-AWGAQLDMKA 996

Query: 880  TSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGK 939
            +  LNK TS++V  + L  G  K   KN +SLMT SGAKGS VNF QI++ LGQQELEG+
Sbjct: 997  SGALNKVTSATV-KKCLPLGTKKMFSKNCLSLMTISGAKGSLVNFSQIAAALGQQELEGR 1055

Query: 940  RVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSR 999
            RVPRM SGKTLP F  +D + RA G+I  RF +GL P EY+FHCMAGREGLVDTAVKT+R
Sbjct: 1056 RVPRMPSGKTLPCFEAYDVSARANGYIACRFFSGLDPPEYFFHCMAGREGLVDTAVKTAR 1115

Query: 1000 SGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALA 1054
            SGYLQRCL+KNLE L++ YDY+VRD DGSIVQF YGED VDV ++ ++ KF+ LA
Sbjct: 1116 SGYLQRCLVKNLESLRVHYDYTVRDCDGSIVQFQYGEDSVDVTRSGYLQKFEFLA 1170



 Score =  106 bits (265), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 65/85 (76%)

Query: 1122 MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIP 1181
            +  ++F  L+   F+ ++A PGE VG++A+QSVGEPSTQMTLNTFH AGRGE NVTLGIP
Sbjct: 1260 VTAEEFATLMNMMFLSNVAPPGEAVGVVAAQSVGEPSTQMTLNTFHFAGRGEANVTLGIP 1319

Query: 1182 RLQEILTIASKDIKTPVITCPLLVG 1206
            RL+E+L  AS+ + TPV+  PL  G
Sbjct: 1320 RLRELLMAASRKLLTPVMVLPLRKG 1344


>gi|401623429|gb|EJS41527.1| rpa190p [Saccharomyces arboricola H-6]
          Length = 1667

 Score =  773 bits (1996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1286 (37%), Positives = 688/1286 (53%), Gaps = 186/1286 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L VP YNPL FN LY  L+  C FCHHF+    EV +   K
Sbjct: 62   CSTCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRLKSVEVHRYACK 121

Query: 61   LELIIKG--------DIIAAKSLDL----------DLPSESSNPEDSDVSNKSSCSMV-- 100
            L L+  G        D I  +SL+           D   ES + EDS  S   S S++  
Sbjct: 122  LRLLQYGLIDESYKVDEINLRSLNSSMYAGDEAIEDNEDESMDGEDSKQSRDISSSLLDE 181

Query: 101  --TPRGNYDNV---------RNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKN 147
              T R  Y ++         R  +   +T+    E K  + +F K  +   KC NC   +
Sbjct: 182  LKTKRSEYADMAIAKALSDGRTTEKGSFTATVNDERKKLVHEFHKKLLARAKCDNCGMFS 241

Query: 148  PRISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFN- 206
            P+  K  F  I    +    I  N ++G    +     ++ + L  S++    +  SF+ 
Sbjct: 242  PKFRKDGFTKIFETALNDKQITNNRVKGFIRQDMIKKQKQAEKLEGSNEDLGDDEESFDV 301

Query: 207  GTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFIS 266
            G  P T      R + GS  +               L ++VK+I++ ++  E  +  ++ 
Sbjct: 302  GRNPTT------RPKTGSTYI---------------LSTEVKNILDTVFRKEQTVLQYVF 340

Query: 267  DMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIY---- 322
              +     K      FF+ V++VPP +FRLPSK GD V E+ Q  LLSKVL  ++     
Sbjct: 341  HSRPNLSRKLVKADSFFMDVIVVPPTRFRLPSKLGDEVHENSQNQLLSKVLTTSLLIRDL 400

Query: 323  ------LANAYVNQPDNAKVIVARWMN----LQQSVNVLFDGKNAAGQRDMAS----GIC 368
                  L    V+  D  +VI +R MN    +Q  VN   D   A G R        G+ 
Sbjct: 401  NDDLSKLQKGKVSLEDR-RVIFSRLMNAFVTIQNDVNAFIDSTKAQGSRTSGKVPIPGVK 459

Query: 369  QLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVV 428
            Q LEKKEGLFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA++LTYPE VT +N+ 
Sbjct: 460  QALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIA 519

Query: 429  KLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRIS-IGRKLDTSRG---AIVQPGKDS 484
            +LR ++ING +  PGAT   ++  ++         +S IG  L+  +     ++ P  + 
Sbjct: 520  ELRQAVINGPDKWPGATQIQNEDGSL---------VSLIGMSLEQRKALANQLLTPSSNV 570

Query: 485  DNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADF 544
                  K VYRH+++ DVVL+NRQPTLHK S+M H VRVL  EKTLR+HYAN   YNADF
Sbjct: 571  STHTLNKKVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADF 630

Query: 545  DGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLN 604
            DGDEMN+HFPQ+E +RAEA N+ N ++QY+ P++G P+R LIQDHI +   LT KD+F  
Sbjct: 631  DGDEMNMHFPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFT 690

Query: 605  RDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITA 664
            R+++ Q +Y         G    + G     +RS+   LP  P I+KP PLWTGKQ+IT 
Sbjct: 691  REQYQQYIY---------GCIRPEDGH---TTRSKIVTLP--PTIFKPYPLWTGKQIITT 736

Query: 665  VLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKK 724
            VL +IT   PP                                 +   N + K+K    K
Sbjct: 737  VLLNIT---PP--------------------------------DMPGINLISKNKI---K 758

Query: 725  EVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND-LVRGVIDKAQF--ADYGLVHTVQEL 781
            +   GK   E E                +I+K+  L+ G++DK+Q+  + YG+VH++ E+
Sbjct: 759  DEYWGKGSTENE----------------VIFKDGALLCGILDKSQYGASKYGIVHSLHEV 802

Query: 782  YGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLE 841
            YG   A  +LS L RLFT ++     TCG+DDL +  +  + R + L  S + G++   E
Sbjct: 803  YGPEVAAKILSILGRLFTNYITATAVTCGMDDLRLTDEGNKWRTDILKTSVDTGRQAAAE 862

Query: 842  ALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLL 901
               L+     D ++L   +++ +R    + +   D   +S++N  T S V+++ + +G +
Sbjct: 863  VTNLDKDTPADDLELLKRLQEILRDNNKSGI--LDAVTSSKVNVIT-SQVVSKCVPDGTM 919

Query: 902  KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 961
            K    N +  M  SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++    
Sbjct: 920  KKFPYNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAM 979

Query: 962  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1021
            AGG++  RF +G++PQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + +SYD S
Sbjct: 980  AGGYVKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNS 1039

Query: 1022 VRDADGSIVQFCYGEDGVDVHQTSFISKFD-------ALAAR------------ERGRGR 1062
            +RDADG++VQF YG D VD+ + S +++F+       AL  +            E     
Sbjct: 1040 IRDADGTLVQFMYGGDAVDITKESHMTQFEFCLDNYYALLKKYNPSALIEHLDVESALKY 1099

Query: 1063 GRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADK----FL 1118
             +     +  H+      Q + Y     + + +  Y+  + +  +D  E F DK    F 
Sbjct: 1100 SKKTLKYRRKHSKEPHYKQSVKYDPVLAKYNPAK-YLGSVSENFQDKLESFLDKNSKLFK 1158

Query: 1119 SNE-MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVT 1177
            S + + ++ F  L++ K++ SL  PGE VG++ASQSVGEPSTQMTLNTFH AG G  NVT
Sbjct: 1159 SADGVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVT 1218

Query: 1178 LGIPRLQEILTIASKDIKTPVITCPL 1203
            LGIPRL+EI+  AS  IKTP +T P+
Sbjct: 1219 LGIPRLREIVMTASAAIKTPQMTLPI 1244


>gi|50286997|ref|XP_445928.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525234|emb|CAG58847.1| unnamed protein product [Candida glabrata]
          Length = 1643

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1274 (38%), Positives = 685/1274 (53%), Gaps = 178/1274 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L VP YNPL FN LY  L+  C FCHHFK    +V +   K
Sbjct: 62   CGTCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRSACLFCHHFKLKSLDVHRYACK 121

Query: 61   LELIIKGDI-----IAAKSLDLDLPSESSNPEDSDVSNKSSCS------MVTPRGNYDNV 109
            L L+  G I     + +  LD  L S  +  +D +  NK+  S      +   R  + ++
Sbjct: 122  LRLLQYGLIDESYQVDSIQLDNVLDSMEAVEDDGEGENKNDMSATLSKELKQKRKEFVDI 181

Query: 110  ---------RNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISKPTFGWI 158
                     R  +   +T+    E K  L +F K  +   KC NC   +P+  K  F  I
Sbjct: 182  SIAKAISEGRTSERGTFTATVNDERKKLLHEFHKRLLMRPKCDNCGMYSPKFRKDGFTKI 241

Query: 159  HMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFN-GTFPGTQDTAA 217
                +    +  N +RG    +     E+   L      +     SF+ G  P T     
Sbjct: 242  FETALNEKQLTNNRVRGFVRRDMLKKKEQSDKLAGKETSE----DSFDIGRNPST----- 292

Query: 218  RRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKA 277
             R + GS  V               L +++++I+  +++ E ++  ++   +     K  
Sbjct: 293  -RPKTGSTYV---------------LSTEIRNILRSVFQKEQQVLQYVFHSKPNLSRKLV 336

Query: 278  GHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANA----YVNQPD- 332
               +FF+ V++VPP +FRLPSK GD V E+ Q  LLSK+L  ++ + +        Q D 
Sbjct: 337  KADMFFMDVLVVPPTRFRLPSKLGDEVHENSQNQLLSKILTTSLLIRDLNDELSTLQKDK 396

Query: 333  ----NAKVIVARWMN----LQQSVNVLFDGKNAAGQ---RDMASGICQLLEKKEGLFRQK 381
                + ++I +R MN    +Q  VN   D   A G    +    G+ Q LEKKEGLFR+ 
Sbjct: 397  VSLEDRRIIFSRLMNAFVTIQNDVNSFIDSTKAQGNTGGKVPIPGVKQALEKKEGLFRKH 456

Query: 382  LMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIH 441
            +MGKRVNYA RSVISPDP +  NEIG+PP FA +LTYPE VT +N+ +LR +IING +  
Sbjct: 457  MMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTSYNIAELRQAIINGPDKW 516

Query: 442  PGATHYLDKLSTMRLPPNKKMRIS-IGRKLDTSRGAIVQPGKDSDNEFE---GKMVYRHL 497
            PGA+   ++  ++         IS +G  L+  +    Q    S N +     K VYRH+
Sbjct: 517  PGASQIQNEDGSL---------ISLVGMTLEQRKALANQLMTPSSNPYTHTLNKKVYRHI 567

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            ++ D+VL+NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFDGDEMN+HFPQ+E
Sbjct: 568  KNRDIVLMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQNE 627

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
             +RAEA+N+ N ++QY+ P++G P+R LIQDHI +   LT KD+F  R+++ Q +Y    
Sbjct: 628  NARAEAFNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTNKDSFFTREQYQQYIY---- 683

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
                 G    + G     +R++   LP  PAI KP PLWTGKQ+IT VL ++T    P +
Sbjct: 684  -----GCIRPEDGH---ATRAKLVTLP--PAIHKPIPLWTGKQIITTVLLNVTPPDMPGI 733

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEA 737
                                           L  +NK+  +  GK               
Sbjct: 734  ------------------------------NLKSSNKIKNEYWGKH-------------- 749

Query: 738  EKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSAL 794
                      SEE  +I+K+  L+ G++DK+Q+  + YG+VH++ E+YG  TA  +LS L
Sbjct: 750  ----------SEENDVIFKDGQLLCGILDKSQYGASKYGIVHSLHEVYGPETAAKVLSVL 799

Query: 795  SRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE-DGAEIDP 853
             RLFT ++    FTCG+DDL +  D  + R + L  S +IG++   E   L+ D    DP
Sbjct: 800  GRLFTNYIMNTAFTCGMDDLRLTSDGNKWRSDILKESVDIGRQAAAEVTNLDKDTPSNDP 859

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
              LK  +E+ +R      +   D   ++++N  T S V+++ +  G +K   +N +  M 
Sbjct: 860  ELLK-RLEEILRDNNKLGI--LDAVSSAKVNTIT-SKVVSQCVPGGTMKKFPENSMQAMA 915

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++    AGG+I  RF +G
Sbjct: 916  LSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYIKGRFYSG 975

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            ++PQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + ISYD SVRDADG+++QF 
Sbjct: 976  IKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNSVRDADGTLIQFL 1035

Query: 1034 YGEDGVDV----HQTSF---ISKFDALAAR------------ERGRGRGRNKFCDKGSHT 1074
            YG D VDV    H T F   +  +DAL  +            E      +    ++  H 
Sbjct: 1036 YGGDAVDVIKESHMTEFNFCLDNYDALLKKYNPSALVEHVDVETALKYSKKTLKNRKKHK 1095

Query: 1075 FVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADK----FLSNE-MAKQDFLK 1129
                  Q + Y     + + +  Y+  + +  +D  E F DK    F   E + ++ F  
Sbjct: 1096 DEKHYKQTLKYDPVLSKYNPAK-YLGAVSENFQDKLELFLDKSSKTFKEYESINEKKFRA 1154

Query: 1130 LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTI 1189
            L++ K++ SL  PGE VG++ASQSVGEPSTQMTLNTFH AG G  NVTLGIPR++EI+  
Sbjct: 1155 LMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMT 1214

Query: 1190 ASKDIKTPVITCPL 1203
            AS  IKTP +T P+
Sbjct: 1215 ASAAIKTPQMTLPI 1228


>gi|68490869|ref|XP_710761.1| hypothetical protein CaO19.9397 [Candida albicans SC5314]
 gi|68490951|ref|XP_710723.1| hypothetical protein CaO19.1839 [Candida albicans SC5314]
 gi|46431960|gb|EAK91475.1| hypothetical protein CaO19.1839 [Candida albicans SC5314]
 gi|46432002|gb|EAK91513.1| hypothetical protein CaO19.9397 [Candida albicans SC5314]
          Length = 1665

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1291 (38%), Positives = 676/1291 (52%), Gaps = 207/1291 (16%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L VPVYNP+ FN LY  L+  C +CH FK ++ EV     K
Sbjct: 62   CTTCGLDEKFCPGHLGHIELPVPVYNPMFFNQLYIFLRSACLYCHKFKLNQLEVHNFECK 121

Query: 61   LELIIKGDIIAAKSLD------------LDLPSESSNPEDS--DVSNKSSCSMVTPRGNY 106
            L LI  G ++    LD            +D+  E ++ E+    V  KS   ++  R  +
Sbjct: 122  LHLIQYGLLLECVELDNIMAKSSKSSSVIDVDGEDNDDEEGGGSVDEKSKKDLMKRRELF 181

Query: 107  ----------DNVRNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISKPT 154
                      D   N K     S+   E K  + +F K  +   KC NC   +P   K  
Sbjct: 182  VKNAIESALKDGRTNHKGVVTASVS-EERKATIHEFYKRLLSRPKCTNCGMYSPGFRKDG 240

Query: 155  FGWIHMNGMPHADIRANLIRGCNLGETF-----SGGEEEKDLGASSDVDAPETHSFNGTF 209
            F  I  N +    I  N ++G    +       +G       GA+SD+            
Sbjct: 241  FTKIFENSLTDKQITNNRVKGLQRPDMIKKNAGNGNGNSSSTGAASDL------------ 288

Query: 210  PGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQ 269
            P        +H+ GS  V               L ++V++I+  L+  E  +   +   +
Sbjct: 289  PNI------KHKGGSKYV---------------LSTEVRNILRSLFHKEQAILQKVFHSR 327

Query: 270  QQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL------ 323
                   +G  +FF   VLVPP +FRLPSK GD + E+ Q  LLS +++ ++ +      
Sbjct: 328  PYQHDPISG-DLFFKQSVLVPPTRFRLPSKLGDEIHENAQNELLSNIIKTSVLIRDLNER 386

Query: 324  -ANAYVNQ--PDNAKVIVARWMN----LQQSVNVLFDG---KNAAGQRDMASGICQLLEK 373
              N Y  +   ++ K+I  R MN    LQ  VN   D    +NA   +    GI Q LEK
Sbjct: 387  ITNMYKEKISGEDKKIIFNRLMNAFVTLQNDVNAFIDSTKNQNAPAGKIPNPGIKQALEK 446

Query: 374  KEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDS 433
            KEGLFR+ +MGKRVNYA RSVISPDP L  NEIG+PP FA +LTYPE VT +N  +LR +
Sbjct: 447  KEGLFRKHMMGKRVNYAARSVISPDPNLETNEIGVPPVFAKKLTYPEPVTSYNASELRQA 506

Query: 434  IINGAEIHPGATHY------LDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNE 487
            +ING +  PGA         L  L  M L    + R +I  +L T  G          N 
Sbjct: 507  VINGPDTWPGAIQVQNEDGSLISLIGMTL----EQRKAIANQLLTPNGG---------NS 553

Query: 488  FEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGD 547
              GK VYRH+++ DVV++NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFDGD
Sbjct: 554  VVGKKVYRHIKNNDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGD 613

Query: 548  EMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDE 607
            EMN+HFPQ+E +RAEA N+ N +NQY+ P++G PLR LIQDHI +   LT KDTF NR+ 
Sbjct: 614  EMNMHFPQNENARAEALNLANTDNQYLTPTSGSPLRGLIQDHISAGVWLTNKDTFFNRET 673

Query: 608  FCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLN 667
            + QL+Y         G    + G       S+  ++ + PAI+KPE LWTGKQVIT VL 
Sbjct: 674  YQQLIY---------GCIRPEDGH-----TSKNRIVTVPPAIYKPEMLWTGKQVITTVLL 719

Query: 668  HITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVV 727
            +I     P V                               L   NK+  D   +     
Sbjct: 720  NIKPDNVPGV------------------------------NLISKNKIKSDYWSE----- 744

Query: 728  EGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGS 784
                          S E E      +I+KN +L+ G++DK+Q+  + +G+VH++ E+YG 
Sbjct: 745  -------------SSTENE------VIFKNGELLSGILDKSQYGASQFGIVHSLHEVYGP 785

Query: 785  NTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALE 844
              AG  LS L RLFT ++ M  FTCG+DDL +  +    RK+ L  S +IG+    E   
Sbjct: 786  TVAGKALSVLGRLFTNYIMMTAFTCGMDDLRLTDEGNTWRKDILKQSVDIGRVAATEVTN 845

Query: 845  LEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPT 904
            L++  + +  +L   +E+ +R   D  +   D    S++N  T S V+++ + +G +K  
Sbjct: 846  LDEDTKNNNKELLRRLEEILR--DDNKLGILDALTQSKVNAIT-SQVVSKCVPDGTMKRF 902

Query: 905  GKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGG 964
              N +  M  SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++   RAGG
Sbjct: 903  PYNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGG 962

Query: 965  FIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD 1024
            +I  RF +G+RPQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + +SYD SVRD
Sbjct: 963  YIKQRFYSGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVRD 1022

Query: 1025 ADGSIVQFCYGEDGVDVHQTSFISKF-------DALAARERGRGRGRNKFCDKGSHTFVM 1077
            ADG+++QF YG D VD  + S +++F       DAL  +        N   D  + ++  
Sbjct: 1023 ADGTLIQFLYGGDAVDTTKQSHMNQFKFCVDNYDALLTKYNPGDMTENIDTDL-ALSYSK 1081

Query: 1078 GRNQEMIYKKCSGQLDASNAY-----IMELPDALKDNAEKFADKF------------LSN 1120
               + +  +K     D    Y     +      L   +EKF +K              S 
Sbjct: 1082 KVRKSLKKQKDVPHYDQVIKYDPVLNVYNPAKYLGSVSEKFQEKLDTYVSKNPTIFAQSK 1141

Query: 1121 EMAK-------QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGE 1173
            E AK       + F  L++ K++ SL  PGE VG++ASQS+GEPSTQMTLNTFH AG G 
Sbjct: 1142 EEAKSTGKITEKKFRALMQLKYMRSLINPGEAVGIIASQSIGEPSTQMTLNTFHFAGHGA 1201

Query: 1174 MNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
             NVTLGIPR++EI+  AS  IKTP +T P+L
Sbjct: 1202 ANVTLGIPRMREIIMTASASIKTPQMTLPIL 1232


>gi|403215737|emb|CCK70236.1| hypothetical protein KNAG_0D04970 [Kazachstania naganishii CBS 8797]
          Length = 1671

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/1293 (37%), Positives = 682/1293 (52%), Gaps = 195/1293 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C +CG  +  CPGH GHI+L VP YNPL FN LY  L+  C FC+ F+    EV     K
Sbjct: 62   CASCGLDEKFCPGHLGHIELPVPCYNPLFFNQLYIYLRSSCLFCYRFRLKALEVHAFAMK 121

Query: 61   LELIIKGDIIAAKSLD---LDLPSESSNP-----------------------EDSDVSNK 94
            L L+  G I  A  LD   +D  S +  P                         +DV   
Sbjct: 122  LRLLQHGLIDEAYKLDELKVDGVSAAMAPGNNDEEAEEDNELDGSATGQSKKVSADVMAD 181

Query: 95   SSCSMVTPRGNYDNV---------RNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNC 143
             +  +   R  + ++         +      +T+   AE K  +  F K  +   KC NC
Sbjct: 182  YAQKLKVLRVEFVDLAIAKAISEGKTTHKGTFTATVSAERKKLVHDFHKRLLARPKCDNC 241

Query: 144  KAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDL--GASSDVDAPE 201
               +P+  K  F  I    +P   +  N ++G    +     ++ K+L  G S++ D PE
Sbjct: 242  GMFSPKFRKDGFTKIFETALPEKQLTNNRVKGFIREDMIKKKKQAKELANGGSAESDEPE 301

Query: 202  THSFN-GTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFE 260
               FN G  P T+      +                     +L ++V++I+  ++++E E
Sbjct: 302  ---FNIGRNPATKPKTGSTY---------------------ILSTEVRNILTSVFKSEQE 337

Query: 261  LCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQAN 320
            +  ++   +     +    +IFF  V++VPP +FRLPSK G+ + E+ Q  LLSK+L   
Sbjct: 338  VLQYVFHARPNLAKRYVSANIFFTDVIVVPPTRFRLPSKMGEEIHENSQNQLLSKILTTA 397

Query: 321  IYLANAYVNQP---------DNAKVIVARWMN----LQQSVNVLFDGKNAAGQRD---MA 364
            + + +               D+ ++I +R MN    +Q  VN   D   A G        
Sbjct: 398  LLIRDLNDEMSKLQKDKVSVDDRRIIFSRLMNGFVTIQNDVNAFIDSTKAQGSTGGNVPV 457

Query: 365  SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTP 424
             G+ Q LEKKEGLFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA +LTYPE VT 
Sbjct: 458  PGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTS 517

Query: 425  WNVVKLRDSIINGAEIHPGATHY------LDKLSTMRLPPNKKMRISIGRKLDTSRGAIV 478
            +N+ +LR ++ING +  PGA         L  L  M L    + R ++  +L T   + V
Sbjct: 518  YNIAELRQAVINGPDKWPGALQIQNEDGSLVSLIGMTL----EQRKALANQLMTP--SYV 571

Query: 479  QPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS 538
                 + N    K VYRH+++ D+V++NRQPTLHK S+M H VRVL GEKTLR+HYAN  
Sbjct: 572  GGATHTLN----KKVYRHIKNRDIVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTG 627

Query: 539  TYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTK 598
             YNADFDGDEMN+HFPQ+E +RAEA+N+ N ++QY+ P++G P+R LIQDHI +   LT 
Sbjct: 628  AYNADFDGDEMNMHFPQNENARAEAFNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTS 687

Query: 599  KDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTG 658
            KD+F  R+++ Q +Y         G    + G     +R +   +P  PA+WKP PLWTG
Sbjct: 688  KDSFFTREQYQQYIY---------GCIRPEDGH---ATRPKLVTVP--PAVWKPVPLWTG 733

Query: 659  KQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKD 718
            KQ+IT VL ++T    P +                               L   NK+  +
Sbjct: 734  KQIITTVLLNVTPADMPGI------------------------------NLKSNNKIKNE 763

Query: 719  KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQF--ADYGLV 775
              GK                         SEE  +++KN +L+ G++DK Q+  + YG+V
Sbjct: 764  YWGKS------------------------SEENEVLFKNGELLCGILDKNQYGASKYGIV 799

Query: 776  HTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIG 835
            H++ E+YG + A  +LS L RLFT ++    FTCG+DDL +  +  + RK+ L  S + G
Sbjct: 800  HSLHEVYGPDIAAKVLSVLGRLFTNYIMATAFTCGMDDLRLTAEGNKWRKDILKTSVDTG 859

Query: 836  KRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL 895
            +    E   LE     D  +L   +++ +R    + +   D   +S++N  T S V++  
Sbjct: 860  REAAAEVTNLEKDTTADDPELLKRLQEVLRDNNKSGI--LDAVTSSKVNAIT-SKVVSTC 916

Query: 896  LSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHP 955
            + +G +K    N +  M  SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P
Sbjct: 917  VPDGTMKKFPYNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKP 976

Query: 956  WDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK 1015
            ++    AGG++  RF +G++PQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + 
Sbjct: 977  YETDAMAGGYVKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVH 1036

Query: 1016 ISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFC------- 1068
            +SYD SVRD DG+++QF YG D VDV + S ++KFD          +  N          
Sbjct: 1037 VSYDNSVRDGDGTLIQFLYGGDAVDVTKESHMTKFDFCLENYDALLKKYNPSALIEHLDV 1096

Query: 1069 ------DKGSHTFVMGRNQEMIYKKCSGQLDASNA------YIMELPDALKDNAEKFADK 1116
                   K S  +     +E  YK+ S + D   A      Y+  + +  +D  E F DK
Sbjct: 1097 ESALKYSKKSLKYRKKHAKEAHYKQ-SPKYDPVLAKYNPAKYLGSVSEKFQDKLETFIDK 1155

Query: 1117 ----FLSN-EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGR 1171
                F  N +++++ F  L++ K++ SL  PGE VG++ASQSVGEPSTQMTLNTFH AG 
Sbjct: 1156 NSKLFKHNDDISEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGH 1215

Query: 1172 GEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G  NVTLGIPR++EI+  AS  IKTP +T P+L
Sbjct: 1216 GAANVTLGIPRMREIIMTASAAIKTPQMTLPIL 1248


>gi|320582105|gb|EFW96323.1| alpha subunit of RNA polymerase I [Ogataea parapolymorpha DL-1]
          Length = 1631

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1283 (37%), Positives = 677/1283 (52%), Gaps = 210/1283 (16%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG     CPGH GHI+L +PVYNPL FN +Y  L+  C +CHHF+    EV K   K
Sbjct: 62   CATCGLDDKYCPGHQGHIELPIPVYNPLFFNQMYIFLRSSCLYCHHFRLRATEVHKYECK 121

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSD--------VSNKSSCSMVTPRGNYDNV--- 109
            L LI  G ++ A  LD ++ S++   ED          V++KS   ++  R  +  +   
Sbjct: 122  LRLIQYGLLLEALELD-NMRSDAELNEDEAIEDDGPVAVNSKSDKELMDKRQEFVEISIA 180

Query: 110  ------RNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISKPTFGWIHMN 161
                  R  +    T+    E K  +  F K  +   +C NC   +P+  K  F  I   
Sbjct: 181  KALSEGRTTERGVMTATVAEERKALIHDFYKHILSRPRCDNCGMYSPQFRKDGFSKIFEL 240

Query: 162  GMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQ 221
            G+    +  N I+G    +    G ++K          P+T  ++            + +
Sbjct: 241  GLKDKQLTNNRIKGVKRQDMLKNGSKDKQ---------PDTDPYS------------QPR 279

Query: 222  KGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKK-AGHS 280
            +GS  V               L ++V++I+ K+++ E ++   +     +   +      
Sbjct: 280  EGSKYV---------------LSTEVRNILRKVFKTEQKVMDLL--FHSRPLSRSPVSAD 322

Query: 281  IFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQ---------- 330
            +FF+  ++VPP +FRLPSK GD V E+ Q  LLSK+L  ++ + +  +N+          
Sbjct: 323  MFFIHALVVPPTRFRLPSKLGDEVHENSQNELLSKILTTSLMIRD--LNEQFSVLSKEIS 380

Query: 331  PDNAKVIVARWMN----LQQSVNVLFDGKNAAGQRDMAS--GICQLLEKKEGLFRQKLMG 384
             ++ K+I  R MN    LQ  VN   D      Q    +  GI Q LEKKEGLFR+ +MG
Sbjct: 381  TEDRKIIFNRLMNAFVTLQNDVNGFIDSTKNQNQNSNTAHPGIKQALEKKEGLFRKHMMG 440

Query: 385  KRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGA 444
            KRVNYA RSVISPDP +  NEIG+PP FA +LTYPE VT  NV +LR ++ING +  PGA
Sbjct: 441  KRVNYAARSVISPDPMIETNEIGVPPVFAKKLTYPEPVTVHNVAELRQAVINGPDRWPGA 500

Query: 445  THY------LDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQ 498
                     L  L  M L    + R +I ++L T       P   SD     K VYRH++
Sbjct: 501  LQVQNEDGSLVSLVGMSL----EQRTAIAKQLLT-------PSNGSD--VVNKKVYRHIR 547

Query: 499  DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
            + DVV++NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFDGDEMN+HFPQ+E 
Sbjct: 548  NNDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQNEN 607

Query: 559  SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
            +RAEA+N+ N ++QY+ P+ G P+R LIQDHI +   LT KDTF  RD++ QL+Y     
Sbjct: 608  ARAEAFNLANTDSQYLTPTAGSPVRGLIQDHISAGVWLTSKDTFFTRDKYQQLVY----- 662

Query: 619  SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVV 678
                G    + G    +      ++ + PA+ KP+PLWTGKQVIT +L +I     P + 
Sbjct: 663  ----GCIRPEDGHSTSL-----RLVTVAPAVIKPQPLWTGKQVITTILLNIKPQELPGI- 712

Query: 679  ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 738
                                          L   NK+  +  G                 
Sbjct: 713  -----------------------------NLRSKNKIKNEYWG----------------- 726

Query: 739  KNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSR 796
             + S+E E     +L    +L+ G++DK+Q+  + YG +H++ E+YG   AG  LS L R
Sbjct: 727  -DGSRENE-----VLFQNGELLCGILDKSQYGASQYGFIHSLHEVYGPTVAGKALSVLGR 780

Query: 797  LFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKL 856
            LFT +  M G TCG+DDL + +D  + R + L  S +IG+    E   L+    +D  + 
Sbjct: 781  LFTNYNMMMGLTCGMDDLKLTEDGNKWRSSLLEESSDIGRIAAAEVTNLDREVRVDDPEF 840

Query: 857  KSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSG 916
               +E+ +R  G  A+   D    S++N  T S V+++ +  G +K    N +  M  SG
Sbjct: 841  LRRMEEILRDDGKLAI--LDAVAQSKVNAIT-SKVVSQCVPAGTMKKFPANAMQTMALSG 897

Query: 917  AKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRP 976
            AKGS VN  QI   LGQQ LEG+RVP MVSGKTLP F P++   RAGG+I +RF +G+RP
Sbjct: 898  AKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPCFKPFETDVRAGGYIKNRFYSGIRP 957

Query: 977  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE 1036
            QEYYFHCMAGREGL+DTAVKT+ SGYLQRCL K LE + +SYD ++R+ADG+++QF YG 
Sbjct: 958  QEYYFHCMAGREGLIDTAVKTANSGYLQRCLTKQLEGVHVSYDNTIRNADGTLIQFLYGG 1017

Query: 1037 DGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIY---KKCSGQLD 1093
            D +DV + S++ +F              N    K S + +   + E      KK   QL 
Sbjct: 1018 DSIDVTKESYMHQFKFFL-------ENYNSLLQKYSPSSIDNLDTETAVSYNKKFRKQLK 1070

Query: 1094 ASNA---------------------YIMELPDALKDNAEKFADK----FLSNEMAK---- 1124
               A                     Y+  + D  +D  +KF ++    F+S + AK    
Sbjct: 1071 KQAALPHYAQSLKYDPTVSVYNPSKYLGSVSDKFEDELDKFIEENQHLFVSGKDAKTRGG 1130

Query: 1125 ---QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIP 1181
               + F  L++ K++ SL  PGE VG++ASQS+GEPSTQMTLNTFH AG G  NVTLGIP
Sbjct: 1131 LTQKKFKALMQLKYMRSLVNPGEAVGIVASQSIGEPSTQMTLNTFHFAGHGAANVTLGIP 1190

Query: 1182 RLQEILTIASKDIKTPVITCPLL 1204
            RL+EI+  AS  IKTP +T P+L
Sbjct: 1191 RLREIVMTASASIKTPQMTLPIL 1213


>gi|241949841|ref|XP_002417643.1| DNA-directed RNA polymerase I 190 kda polypeptide largest subunit,
            putative [Candida dubliniensis CD36]
 gi|223640981|emb|CAX45330.1| DNA-directed RNA polymerase I 190 kda polypeptide largest subunit,
            putative [Candida dubliniensis CD36]
          Length = 1656

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1283 (38%), Positives = 672/1283 (52%), Gaps = 198/1283 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L VPVYNP+ FN LY  L+  C +CH FK ++ EV     K
Sbjct: 62   CTTCGLDEKFCPGHLGHIELPVPVYNPMFFNQLYIFLRSACLYCHKFKLNQLEVHNFECK 121

Query: 61   LELIIKGDIIAAKSLD--LDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWT 118
            L LI  G ++    LD  +   S+SS+  D D  +      V  +   D ++  +     
Sbjct: 122  LHLIQYGLLLECVELDNIMAKSSKSSSEIDIDGEDDDEEGSVDEKSKRDLMKRRELFVKN 181

Query: 119  SLQFA------------------EAKLALLQFLK--IETTKCGNCKAKNPRISKPTFGWI 158
            +++ A                  E K  +  F K  +   KC NC   +P   K  F  I
Sbjct: 182  AIESALKDGRTSHKGVVTASVSEERKATIHDFYKRLLSRPKCTNCGMYSPGFRKDGFTKI 241

Query: 159  HMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAAR 218
              N +    I  N ++G    +       +K+ G  +   A              D    
Sbjct: 242  FENSLTDKQITNNRVKGLQRPDMI-----KKNAGNGNSSSA------------ASDLPNI 284

Query: 219  RHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAG 278
            +H+ GS  V               L ++V++I+  L+  E  +   +   +       +G
Sbjct: 285  KHKGGSKYV---------------LSTEVRNILRSLFHKEQAILQKVFHSRPYQHDPISG 329

Query: 279  HSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIY-------LANAYVNQ- 330
              +FF   VLVPP +FRLPSK GD + E+ Q  LLS +++ ++        ++N Y  + 
Sbjct: 330  -DLFFKQAVLVPPTRFRLPSKLGDEIHENAQNELLSNIIKTSVLIRDLNERISNMYKEKI 388

Query: 331  -PDNAKVIVARWMN----LQQSVNVLFDG---KNAAGQRDMASGICQLLEKKEGLFRQKL 382
              ++ K+I  R MN    LQ  VN   D    +NA   +    GI Q LEKKEGLFR+ +
Sbjct: 389  SGEDKKIIFNRLMNAFVTLQNDVNAFIDSTKNQNAPAGKVPNPGIKQALEKKEGLFRKHM 448

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
            MGKRVNYA RSVISPDP L  NEIG+PP FA +LTYPE VT +NV +LR ++ING +  P
Sbjct: 449  MGKRVNYAARSVISPDPNLETNEIGVPPVFAKKLTYPEPVTSYNVSELRQAVINGPDTWP 508

Query: 443  GATHY------LDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
            GA         L  L  M L    + R +I  +L T  G          N   GK VYRH
Sbjct: 509  GAIQVQNEDGSLISLVGMTL----EQRKAIANQLLTPNGG---------NSVVGKKVYRH 555

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++ DVV++NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFDGDEMN+HFPQ+
Sbjct: 556  IKNNDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQN 615

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E +RAEA N+ N +NQY+ P++G PLR LIQDHI +   LT KDTF NR+ + QL+Y   
Sbjct: 616  ENARAEALNLANTDNQYLTPTSGSPLRGLIQDHISAGVWLTNKDTFFNRETYQQLIY--- 672

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                  G    + G       S+  ++ + PAI+KPE LWTGKQVIT VL +I     P 
Sbjct: 673  ------GCIRPEDGH-----TSKNRIVTVPPAIYKPEMLWTGKQVITTVLLNIKPDNVPG 721

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
            V                               L   NK+  D   +              
Sbjct: 722  V------------------------------NLISKNKIKSDYWSE-------------- 737

Query: 737  AEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSA 793
                 S E E      +I+KN +LV G++DK+Q+  + +G+VH++ E+YG   AG  LS 
Sbjct: 738  ----SSTENE------VIFKNGELVCGILDKSQYGASQFGIVHSLHEVYGPTVAGKALSV 787

Query: 794  LSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            L RLFT ++ M  FTCG+DDL +  +    RK+ L  S +IG+    E   L++  + + 
Sbjct: 788  LGRLFTNYIMMTAFTCGMDDLRLTDEGNTWRKDILKQSVDIGRVAATEVTNLDEDTKNNN 847

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
             +L   +E+ +R   D  +   D    S++N  T S V+++ + +G +K    N +  M 
Sbjct: 848  KELLRRLEEILR--DDNKLGILDAITQSKVNAIT-SQVVSKCVPDGTMKRFPYNSMQAMA 904

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++   RAGG+I  RF +G
Sbjct: 905  LSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKQRFYSG 964

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            +RPQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + +SYD SVRDADG+++QF 
Sbjct: 965  IRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVRDADGTLIQFL 1024

Query: 1034 YGEDGVDVHQTSFISKF-------DALAARERGRGRGRNKFCD------KGSHTFVMGRN 1080
            YG D VD  + S +++F       DAL  +        N   D      K     +  +N
Sbjct: 1025 YGGDAVDTTKQSHMNQFKFCVDNYDALLTKYNPGDMTENIDTDLAMSYSKKVRKSLKKQN 1084

Query: 1081 QEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKF------------LSNEMAK---- 1124
                Y +        N Y       L   +EKF +K              S E AK    
Sbjct: 1085 DIPHYDQVIKYDPVLNVY--NPAKYLGSVSEKFQEKLDTYVSKNPTVFAQSKEEAKSTGK 1142

Query: 1125 ---QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIP 1181
               + F  L++ K++ SL  PGE VG++ASQS+GEPSTQMTLNTFH AG G  NVTLGIP
Sbjct: 1143 ITEKKFRALMQLKYMRSLINPGEAVGIIASQSIGEPSTQMTLNTFHFAGHGAANVTLGIP 1202

Query: 1182 RLQEILTIASKDIKTPVITCPLL 1204
            R++EI+  AS  IKTP +T P+L
Sbjct: 1203 RMREIIMTASASIKTPQMTLPIL 1225


>gi|255713026|ref|XP_002552795.1| KLTH0D01628p [Lachancea thermotolerans]
 gi|238934175|emb|CAR22357.1| KLTH0D01628p [Lachancea thermotolerans CBS 6340]
          Length = 1654

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/1286 (36%), Positives = 684/1286 (53%), Gaps = 183/1286 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L VP YNPL F+ LY  L+  C +CH F+    EV +   K
Sbjct: 62   CATCGLDEKFCPGHQGHIELPVPCYNPLFFSQLYIFLRSSCLYCHGFRLKASEVHRYACK 121

Query: 61   LELIIKGDIIA-----------------------------AKSLDLDLPSESSNPEDSDV 91
            L+L+  G I                               +K +D+ L  E        V
Sbjct: 122  LKLLQYGLIDECYKLDELRVGTLQTAVDEAEEDDGDDDKPSKLVDVALLRELKVKRREFV 181

Query: 92   SNKSSCSMVTPRGNYDNVRNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNPR 149
                + ++   R +Y+         +T+    E K  +  F K  +   KC NC   +P+
Sbjct: 182  DISIATAISEGRTSYNGT-------FTATVNDERKALIHDFYKRLLSRPKCDNCGMFSPK 234

Query: 150  ISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTF 209
              K  F  I    +       N ++G    +     ++ + L A     A E    +  F
Sbjct: 235  FRKDGFTKIFETSLTEKQQTNNRVKGLIRADMIKKQQQRRKL-ADDQNSAGEPMEVDEDF 293

Query: 210  PGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQ 269
              ++D +A R + GS  +               L ++V++I+  +++ E E+  ++   +
Sbjct: 294  DNSRDASA-RPKTGSTYI---------------LSTEVRNILRSVFKKEQEVLQYVFHSR 337

Query: 270  QQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVN 329
                 K     +FFL VV+VPP +FRLPSK G+ + E+ Q  LLSK+L  ++ + +  +N
Sbjct: 338  PNLSKKLVRADMFFLEVVIVPPTRFRLPSKLGEEIHENTQNQLLSKILTTSLLIRD--LN 395

Query: 330  QP-----------DNAKVIVARWMN----LQQSVNVLFDGKNAAGQ---RDMASGICQLL 371
            +            ++ KVI  R MN    +Q  VN   D   A G    +    G+ Q L
Sbjct: 396  EEMSKLQKDKVSVEDKKVIFNRLMNAFVTIQNDVNAFIDSTKAQGNTGGKVPIPGVKQAL 455

Query: 372  EKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLR 431
            EKKEGLFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA +LTYPE VT +N+ +LR
Sbjct: 456  EKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTSYNIAELR 515

Query: 432  DSIINGAEIHPGATHYLDKLSTM--RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE 489
             ++ING +  PGAT   ++  ++   +    + R ++  +L T       P   S     
Sbjct: 516  QAVINGPDKWPGATQIQNEDGSLVSLVGMTTEQRKALANQLLT-------PSSHSATHSL 568

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
             K VYRH+++ D+V++NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFDGDEM
Sbjct: 569  NKKVYRHIKNRDIVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEM 628

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+HFPQ+E +RAEA+N+ N ++QY+ P++G P+R LIQDHI +   LT KD+F  R+E+ 
Sbjct: 629  NMHFPQNENARAEAFNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTNKDSFFTREEYQ 688

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
            Q +Y         G    + G       +  ++L + PA++KP PLWTGKQ+IT VL ++
Sbjct: 689  QYIY---------GCIRPEDGH-----ATRNKLLTVPPAVFKPVPLWTGKQIITTVLLNV 734

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
            T    P +                               L   NK+  +  GK       
Sbjct: 735  TPADMPGI------------------------------NLLSKNKIKNEYWGKG------ 758

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNT 786
                              S E  +++KN +L+ G++DK+Q+  + YG+VH++ E+YG + 
Sbjct: 759  ------------------STENDVVFKNGELLCGILDKSQYGASKYGIVHSLHEVYGPDV 800

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE 846
            +  +LS L RLFT ++    FTCG+DDL + ++  + R + L  S ++G+    E   L+
Sbjct: 801  SAKVLSVLGRLFTNYITATAFTCGMDDLRLTEEGNKWRSDILKTSTDVGRVAAAEVTNLD 860

Query: 847  DGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
                 +  +L   +E+ +R   D  +   D   +S++N  T S V+++ + +G +K    
Sbjct: 861  KDVSANDSELLKRLEEILR--DDNKLGILDAVTSSKVNSIT-SQVVSKCVPDGTMKKFPN 917

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
            N +  M  SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++    AGG+I
Sbjct: 918  NSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDAMAGGYI 977

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
              RF +G++PQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + ISYD SVRDAD
Sbjct: 978  KGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNSVRDAD 1037

Query: 1027 GSIVQFCYGEDGVDVHQTSFISKF-------DALAAR------------ERGRGRGRNKF 1067
            G+++QF YG D VDV Q S +++F       DAL  +            E      +   
Sbjct: 1038 GTLIQFLYGGDAVDVTQESHMTQFKFCADNYDALLKKYNPAALIEHLDVESALKYSKKAL 1097

Query: 1068 CDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADK----FLSNE-M 1122
              +     V   +Q++ Y     + + S  Y+  + +  +D  E F D     F S + +
Sbjct: 1098 KHRKKTEKVPHYSQKVKYDPVVSKFNPSK-YLGSVSENFQDKLESFIDSNNDLFKSRDTV 1156

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
            +++ F  L++ K++ SL  PGE VG++ASQSVGEPSTQMTLNTFH AG G  NVTLGIPR
Sbjct: 1157 SEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPR 1216

Query: 1183 LQEILTIASKDIKTPVITCPLLVGKT 1208
            ++EI+  AS  IKTP +T P+L   T
Sbjct: 1217 MREIIMTASAAIKTPQMTLPILADVT 1242


>gi|410083934|ref|XP_003959544.1| hypothetical protein KAFR_0K00540 [Kazachstania africana CBS 2517]
 gi|372466136|emb|CCF60409.1| hypothetical protein KAFR_0K00540 [Kazachstania africana CBS 2517]
          Length = 1662

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/1284 (37%), Positives = 684/1284 (53%), Gaps = 182/1284 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L VPVYNPL FN LY  L+  C FCHHF+    EV +   K
Sbjct: 62   CTTCGLDEKFCPGHVGHIELPVPVYNPLFFNQLYIYLRSSCLFCHHFRLKSAEVHRFALK 121

Query: 61   LELIIKGDIIAAKSLD----------LDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVR 110
            L+L+  G I  +  LD          +D        ED+ ++  S  +  T   +   ++
Sbjct: 122  LKLLQYGLIDESYKLDEIAVGDLQHLMDEAENDEAMEDNTLNGGSVKASDTKNVSAQWLK 181

Query: 111  NLKPQ--EWTSLQFAEA--------------------KLALLQFLK--IETTKCGNCKAK 146
             LK +  E+  L  A+A                    K  + +F K  +   KC NC   
Sbjct: 182  ELKRKRTEYVDLVIAKALSDGRTTERGTFTATVNDERKRLIHEFHKKILARPKCDNCGMF 241

Query: 147  NPRISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFN 206
            +P+  K  F  I    +    +  N ++G    +  +  E+ K L A  D+D+ +T    
Sbjct: 242  SPKFRKDGFTKIFETALTDKQLTNNRVKGFIRQDMINKQEQAKQL-AGQDIDSDKTFDI- 299

Query: 207  GTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFIS 266
            G  P      A + + GS  +               L ++V++I+  ++  E  +  +I 
Sbjct: 300  GRNP------ASKPKTGSTYI---------------LSTEVRNILNAVFRKEQMVLQYIF 338

Query: 267  DMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANA 326
              +     K      FF+ VV+VPP +FRLPSK G+ V E+ Q  LLSK+L  ++ + + 
Sbjct: 339  HARPNLSKKYVSADAFFMDVVVVPPTRFRLPSKLGEEVHENSQNQLLSKILTTSLLIRDL 398

Query: 327  YVNQP---------DNAKVIVARWMN----LQQSVNVLFDGKNAAGQ---RDMASGICQL 370
                          D+ ++I +R MN    +Q  VN   D   A G    +    G+ Q 
Sbjct: 399  NDEMSKLQKDKVSVDDRRIIFSRLMNAFVTIQNDVNAFIDSTKAQGNTSGKVPVPGVKQA 458

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            LEKKEGLFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA +LTYPE VT +N+ +L
Sbjct: 459  LEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTSFNIAEL 518

Query: 431  RDSIINGAEIHPGATHYLDKLSTM--RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEF 488
            R ++ING +  PGAT   ++  ++   +  + + R ++  +L T          +     
Sbjct: 519  RQAVINGPDKWPGATQIQNEDGSLVSLIGMSAEQRKALANQLMTP------TSHNGATHT 572

Query: 489  EGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 548
              K VYRH+++ D+V++NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFDGDE
Sbjct: 573  LNKKVYRHIKNRDIVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDE 632

Query: 549  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
            MN+HFPQ+E +RAEA+N+ N ++QY+ P++G P+R LIQDHI +   LT KD+F  R+++
Sbjct: 633  MNMHFPQNENARAEAFNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTNKDSFFTREQY 692

Query: 609  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
             Q +Y         G    + G     +R++   +P  PA+ KP PLWTGKQ+IT VL +
Sbjct: 693  QQYIY---------GCIRPEDGH---ATRAKLATVP--PAVMKPVPLWTGKQIITTVLLN 738

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
            IT    P +                               L  +NK+  D  GK      
Sbjct: 739  ITPPDMPGI------------------------------NLKSSNKIKNDYWGKG----- 763

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSN 785
                               S E  +I+KN +L+ G++DK+Q+  + YG++H + E+YG +
Sbjct: 764  -------------------SNENEVIFKNGELLCGILDKSQYGASKYGIIHCLHEVYGPD 804

Query: 786  TAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALEL 845
             +   LS L RLFT ++    FTCG+DDL + ++  + RK  L  S + G+    E   L
Sbjct: 805  VSAKALSVLGRLFTNYITATAFTCGMDDLRLTEEGNKWRKEILKTSVDTGREAAAEVTNL 864

Query: 846  -EDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPT 904
             +D    DP  LK  +E+ +R    + +   D   +S++N  T S V++  +  G +K  
Sbjct: 865  PKDTPSNDPELLK-RLEEIIRDNNKSGI--LDAVTSSKVNTIT-SKVVSTCVPGGTMKKF 920

Query: 905  GKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGG 964
             +N +  M  SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++   RAGG
Sbjct: 921  PENSMQSMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDARAGG 980

Query: 965  FIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD 1024
            +I  RF +G+RPQEYYFHCMAGREGL+DTAVKT+ SGYLQRCL K LE + +SYD S+RD
Sbjct: 981  YIKGRFYSGIRPQEYYFHCMAGREGLIDTAVKTASSGYLQRCLTKQLEGVHVSYDNSIRD 1040

Query: 1025 ADGSIVQFCYGEDGVDVHQTSFISKF-------DALAAR------------ERGRGRGRN 1065
            ADG+++Q  YG D +DV + S ++KF       DAL  +            E      + 
Sbjct: 1041 ADGTLIQMLYGGDAIDVTKESHLTKFNFCLENYDALLKKYNPSALIEHLDVETALKYSKK 1100

Query: 1066 KFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFA---DKFLSN-- 1120
                +  H       Q + Y     + + +  Y+  + +  +D  E F     K L +  
Sbjct: 1101 SLKYRKKHAKEAHYQQTVKYDPILSKYNPAK-YLGSVSENFQDQLENFLHDNSKLLKSHE 1159

Query: 1121 EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGI 1180
            ++ ++ F  L++ K++ SL  PGE VG++ASQSVGEPSTQMTLNTFH AG G  NVTLGI
Sbjct: 1160 DVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGI 1219

Query: 1181 PRLQEILTIASKDIKTPVITCPLL 1204
            PRL+EI+  AS  IKTP +T P+L
Sbjct: 1220 PRLREIIMTASAAIKTPQMTLPIL 1243


>gi|367004368|ref|XP_003686917.1| hypothetical protein TPHA_0H02800 [Tetrapisispora phaffii CBS 4417]
 gi|357525219|emb|CCE64483.1| hypothetical protein TPHA_0H02800 [Tetrapisispora phaffii CBS 4417]
          Length = 1648

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/1278 (36%), Positives = 679/1278 (53%), Gaps = 176/1278 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L VP YNPL FN LY  L+  C FCHHF+    EV +   K
Sbjct: 62   CSTCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRLRSVEVHRYTCK 121

Query: 61   LELIIKG--------DIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNL 112
            L+L+  G        D +    LD  +       ED+ +  + S  +     +Y     +
Sbjct: 122  LKLLQYGLIEESYQIDNLTIGGLDESITDAEEAEEDNALDGEQSSRIKNFADSYVKEIKI 181

Query: 113  KPQEWTSLQFAEA--------------------KLALLQFLK--IETTKCGNCKAKNPRI 150
            K  E+  +  A+A                    K  +  F K  +   KC NC   +P+ 
Sbjct: 182  KRNEFVEMAIAKALSEGKTSVRGTFTAIINDERKKLVHDFYKKLLARPKCDNCGMFSPKF 241

Query: 151  SKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFP 210
             K  F  I    +    +  N +RG    +     E+ K L      +  E +   G  P
Sbjct: 242  RKDGFTKIFETALSDKQLTNNRVRGFVRQDMIKKQEQAKKLNGE---ETTEENFEVGRNP 298

Query: 211  GTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQ 270
                  +R+ + GS  +               L ++V++I+  +++ E ++  ++   + 
Sbjct: 299  ------SRKTKTGSTYI---------------LSTEVRNILRAVFKTEQQVLQYVFHARP 337

Query: 271  QGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL--ANAYV 328
               GK      FF+ VVLVPP +FRLPSK GD V E+ Q  LLSK+L  ++ +   N  +
Sbjct: 338  NLTGKIVKADDFFMDVVLVPPTRFRLPSKLGDEVHENSQNQLLSKILTTSLLIRDLNDEI 397

Query: 329  NQP-------DNAKVIVARWMN----LQQSVNVLFDGKNAAGQRD---MASGICQLLEKK 374
            ++        D+ ++I +R MN    +Q  VN   D   A G         G+ Q LEKK
Sbjct: 398  SKLQKDKVALDDRRIIFSRLMNAFVTIQNDVNSFIDSSKAQGNNSGKLPVPGVKQALEKK 457

Query: 375  EGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSI 434
            EGLFR+ +MGKRVNYA RSVISPDP +  +EIG+PP FA +LTYPE VT +N+ +LR ++
Sbjct: 458  EGLFRKHMMGKRVNYAARSVISPDPNIETDEIGVPPVFATKLTYPEPVTSYNIAELRQAV 517

Query: 435  INGAEIHPGATHYLDKLSTM--RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKM 492
            ING +  PGAT   ++  ++   +    + R ++  +L T       P  +       K 
Sbjct: 518  INGPDKWPGATQIQNEDGSLVSLIGMTVEQRKALANQLMT-------PSSNPATHTLNKK 570

Query: 493  VYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVH 552
            VYRH+++ DVV++NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFDGDEMN+H
Sbjct: 571  VYRHIKNRDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMH 630

Query: 553  FPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLL 612
            FPQ+E +RAEA+N+ N ++QY+ P++G P+R LIQDHI +   LT KD++  R+++ Q +
Sbjct: 631  FPQNENARAEAFNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSYFTREQYQQYI 690

Query: 613  YSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRG 672
            Y         G    + G       +  ++L + PAI KP PLWTGKQ+IT VL +++  
Sbjct: 691  Y---------GCIRPEDGH-----SANNKLLTIPPAIIKPVPLWTGKQIITTVLLNVSPV 736

Query: 673  RPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPG 732
              P +                               L   NK+  +  G+  E       
Sbjct: 737  DMPGI------------------------------NLKSKNKIKDEYWGQHSE------- 759

Query: 733  EEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTL 790
                            E ++L     L+ G++DK+Q+  + YG+VH +QE+YG   A  +
Sbjct: 760  ----------------ENEVLFKDGALLCGILDKSQYGASKYGIVHALQEVYGPEVAAKV 803

Query: 791  LSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAE 850
            LS L RLFT ++    FTCG+DDL +  +  + R + L  S + G++  +E   LE    
Sbjct: 804  LSVLGRLFTNYITNTAFTCGMDDLRLTDEGNKWRTDILKTSVDRGRQAAVEVTNLEKDTS 863

Query: 851  IDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS 910
             D  +L   +E+ +R    + +   D   +S++N  T S V+++ +  G +K   +N + 
Sbjct: 864  ADDSELLKRLEEILRDDNKSGI--LDAVTSSKVNAIT-SQVVSKCVPGGTMKRFPENSMQ 920

Query: 911  LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRF 970
             M  SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++    AGG+I  RF
Sbjct: 921  SMALSGAKGSNVNVSQIMCLLGQQALEGRRVPIMVSGKTLPSFKPFETDAMAGGYIKGRF 980

Query: 971  LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIV 1030
             +G++PQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + +SYD +VRD DG+++
Sbjct: 981  YSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNTVRDGDGTLI 1040

Query: 1031 QFCYGEDGVDVHQTSFISKFDAL-----AARERGRGRGRNKFCD-----KGSHTFVMGRN 1080
            +F YG D VDV + S++++FD       +  +R        F D     K S   +  R 
Sbjct: 1041 EFLYGGDAVDVTKESYMNQFDFCLDNYDSLLKRYNPAALIDFLDVDSALKYSKKTLKHRK 1100

Query: 1081 ---------QEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADK----FLSNE-MAKQD 1126
                     Q + Y     + + +  Y+  + +  +D  E F D     F S++ + ++ 
Sbjct: 1101 KNKNVPHYLQNIKYDPVLAKYNPAK-YLGSVSEKFQDKLENFLDSNSQLFKSHKSVNEKK 1159

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            F  L++ K++ SL  PGE VG++ASQSVGEPSTQMTLNTFH AG G  NVTLGIPR++EI
Sbjct: 1160 FRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRMREI 1219

Query: 1187 LTIASKDIKTPVITCPLL 1204
            +  AS  IKTP +T P+L
Sbjct: 1220 IMTASAAIKTPQMTLPIL 1237


>gi|328771968|gb|EGF82007.1| hypothetical protein BATDEDRAFT_18926 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1709

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1329 (37%), Positives = 690/1329 (51%), Gaps = 231/1329 (17%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC      CPGHFGHI+L VPVYN + F LLY LL+  C++CHH + SR  +   V K
Sbjct: 63   CSTCSLGFSNCPGHFGHIELSVPVYNSVNFKLLYKLLQSTCYYCHHLRTSRSVIHSFVAK 122

Query: 61   LELIIKGDIIAAKSLDLDLP---------------------------------SESSNPE 87
            L+LI  G I+ A  LD   P                                 +E S P+
Sbjct: 123  LKLIHAGLIVEAAELDSAFPKNSSSTNKSSTFINDEAEEDHEDMISKSFMNVDTEDSEPQ 182

Query: 88   DS----DVSNKSSCSMVTPRGNYDN---VRN--LKPQEWTSLQFAEAKLALLQFLKIETT 138
            DS    +   ++S  ++     + +    +N   +P + T L     +L    F  I   
Sbjct: 183  DSAGSVNFEKRTSAQIIAAIDRFVDQAFAKNPYTRPSKVTLLTANIRRLERQFFSAIPAQ 242

Query: 139  KCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVD 198
             C NC+ ++P+  K   G   +   P  + +   +   NL                 ++ 
Sbjct: 243  TCQNCRGQSPKFRKD--GESKIFEQPLNNKQKMSMNTQNL--------------TPENLF 286

Query: 199  APETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENE 258
             P+ H+ +       D   +  Q+G  AV      Q+++F   L P  VK  IE LW+ E
Sbjct: 287  GPKMHAVD-------DDNEKTAQQGD-AVSQAIDSQREIF---LTPLQVKAHIELLWKRE 335

Query: 259  FELCSFI-SDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVL 317
              +   +  +   +   + +   +FFL VV V P +FR  SK GDS  E+PQ + L+ +L
Sbjct: 336  TVVLDLLFGNSSSKKSPRVSSPLMFFLDVVSVTPNRFRPISKMGDSQYENPQNIFLTAIL 395

Query: 318  QANIYLANAYVNQPDNAKVI------------------VARWMNLQQSVNVLFDGKN--- 356
            +AN+ +      +    KVI                  +  WM LQ SVN L D      
Sbjct: 396  KANVSIQELQRQEEAALKVIADDPKLYQLQKAEFLRRIIDAWMILQNSVNYLLDSSKCPL 455

Query: 357  AAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRL 416
            +   +    GI QLLEKKEGLFR+ +MGKRVN+A RSVISPDPY+  NEIGIPP FA +L
Sbjct: 456  SVSGKIAPPGIRQLLEKKEGLFRKHMMGKRVNHAARSVISPDPYIETNEIGIPPVFASKL 515

Query: 417  TYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGA 476
            TYPE VT  N+ ++R  ++NG    PGATH  ++  T+         IS+    D  R A
Sbjct: 516  TYPEPVTHHNIKEMRRCVVNGPLKWPGATHVENEDGTL---------ISLSSFDDAGRTA 566

Query: 477  IV-----------QPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLK 525
            I            +     + +   K VYRH+++GD +L+NRQPTLHKPSIMAH  RVL 
Sbjct: 567  IANQLLTPSMHHGETNHSYNFDHVNKKVYRHIRNGDFLLLNRQPTLHKPSIMAHTARVLP 626

Query: 526  GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSL 585
            GEKT+RMHYANC+TYNADFDGDEMN+HFPQ+E++RAEA  I   + QY+ P++G  LR L
Sbjct: 627  GEKTIRMHYANCNTYNADFDGDEMNIHFPQNEIARAEAMLIARNDQQYLVPTDGGVLRGL 686

Query: 586  IQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL 645
            IQDH+ +   +  +DTF NR+ + QL+Y  G+   G+    G+             V+ L
Sbjct: 687  IQDHVDAGVDMCSRDTFFNRETYMQLVY-IGLCPEGIIGRNGR-------------VVTL 732

Query: 646  LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKND 705
             PAI KP   WTGKQ+I+ +L ++              +P+D               +N 
Sbjct: 733  PPAIIKPVAKWTGKQIISTILVNL--------------IPED---------------RNL 763

Query: 706  KGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVID 765
               +SK+    K          +  P   +E             + ++    DL+ G++D
Sbjct: 764  LNLVSKSRIPAK----------QWGPSAPEE-------------QTVIFMDGDLLTGILD 800

Query: 766  KAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERE 823
            K+QF  +  GLVH V E+YG++ AG LLS L RLFT +LQ  GFTC +DDL +  + +  
Sbjct: 801  KSQFGASANGLVHAVYEVYGASYAGKLLSILGRLFTSYLQFAGFTCRMDDLRLTPEGDAV 860

Query: 824  RKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQL 883
            R   +  +  IG     E    +  A    I+L   +E+ +R      +A  D  M S+ 
Sbjct: 861  RCELIESASSIGLDAISEITGGDKTALAKNIELNVALEQVLRNS--EKMAALDSAMKSRT 918

Query: 884  NKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPR 943
            NK T S +I+  + + LLKP   N + +MT SGAKGS VN  QIS  LGQQELEGKRVP 
Sbjct: 919  NKVT-SKIISSCVPDRLLKPFPHNNMQVMTVSGAKGSGVNVSQISCLLGQQELEGKRVPT 977

Query: 944  MVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYL 1003
            M+SGKTLPSF  +D + RAGG+I  RFLTG++PQEYYFHCMAGREGL+DTAVKTSRSGYL
Sbjct: 978  MISGKTLPSFLAYDTSARAGGYITGRFLTGIKPQEYYFHCMAGREGLIDTAVKTSRSGYL 1037

Query: 1004 QRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFD------------ 1051
            QRCLIK+LE L + YD++VRD DGS++QF YGED +DV + + + KFD            
Sbjct: 1038 QRCLIKHLEGLSVHYDHTVRDMDGSLLQFQYGEDALDVVKQTTLQKFDFCALNYRALLKR 1097

Query: 1052 ----ALAAR----------ERGRGRGRNKFCDKG-----SHTFVMG--RNQEMIYKKCSG 1090
                ALA +          ++ R + R    + G     +H  ++        I     G
Sbjct: 1098 YDPSALAGKVDDESLERYLKKQRKQDRESIRESGGSFKPNHDPILSIFSPSRHIGSVSDG 1157

Query: 1091 QLDASNAYIMELPDAL----------------KDNAEKFADKFLSNEMAKQDFLKLVKHK 1134
              DA +AYI +    L                   A    D +   +++ + F  L++ +
Sbjct: 1158 FADALSAYIEKNTSQLLYTSSSKKTHKNRTDENGEARPVKDTWSVPKISARKFKVLMELR 1217

Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
            ++ SL +PGE VGLLA+QS+GEPSTQMTLNTFH AG G  NVTLGIPRL+EI+  AS+ I
Sbjct: 1218 YMHSLVEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGFGAKNVTLGIPRLREIIMTASQSI 1277

Query: 1195 KTPVITCPL 1203
            +TP++  PL
Sbjct: 1278 QTPLMRLPL 1286


>gi|66819721|ref|XP_643519.1| RNA polymerase I, largest subunit [Dictyostelium discoideum AX4]
 gi|74860727|sp|Q86H36.1|RPA1_DICDI RecName: Full=DNA-directed RNA polymerase I subunit rpa1; Short=RNA
            polymerase I subunit A1; AltName: Full=DNA-directed RNA
            polymerase I largest subunit; AltName: Full=DNA-directed
            RNA polymerase I subunit A
 gi|60471674|gb|EAL69630.1| RNA polymerase I, largest subunit [Dictyostelium discoideum AX4]
          Length = 1615

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1269 (38%), Positives = 674/1269 (53%), Gaps = 210/1269 (16%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC      CPGHFGHI+L +P YNP+ F  ++ LLK  CF CHHFK  +  + + + +
Sbjct: 65   CATCSLDFIECPGHFGHIELAIPCYNPVSFQTIFKLLKNKCFHCHHFKHGKPIINQFIEE 124

Query: 61   LELIIKGDIIAAKSLDL---------DLPSESSNPEDSDV--SNKSSCSMVTPRGNYDNV 109
            L L+ KGD++ A++L           +     SN E  +V  S++S    +    N  N 
Sbjct: 125  LTLLFKGDVVKARNLRERNVLLRGYEEKKKGKSNEEGEEVMESDESDSDKMDTDENKTNG 184

Query: 110  RNLKPQEWTSLQFAEAKLALLQFLKIETTK------------CGNCKAKNPRISKPTFGW 157
            + +    + + +    K   ++  K E  K            CGNC A +PR+       
Sbjct: 185  KIICDGVFNAKEIYSGKATHIEDFKREVFKEFFGSFSGYAIPCGNCGAYSPRLRNGDASK 244

Query: 158  IHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAA 217
              +  MP  D  A       L   FS  +E+ +               +GT+        
Sbjct: 245  SKLFIMPLHDKYATKNSAIKLPTNFSSVKEQTE---------------HGTW-------- 281

Query: 218  RRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFE-----LCSFISDMQQQG 272
                                      P +V D ++KL+ENE E     L   +  +  +G
Sbjct: 282  ------------------------FAPWEVLDNMKKLFENEKEILDMLLGHLVPIVTNKG 317

Query: 273  ---------FGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL 323
                     F K++     F+ V  V P ++R P+       EHPQ      ++++N  +
Sbjct: 318  GAKKNVGRQFTKESNVDSLFMRVFPVTPARYRPPNFVNGRRSEHPQNSHYKGMVKSNKMI 377

Query: 324  ANAYVNQPDNAKVIVARWMNLQQSVNVLFD-GKNAAGQRDMASGICQLLEKKEGLFRQKL 382
              +       AK +V    +LQ  VN ++D  K+ +   ++A+GI Q+LEKKEGLFR+ +
Sbjct: 378  RQSIDAGEGKAKFLVNSVCDLQMHVNNMYDNSKSNSNTNEVANGIKQILEKKEGLFRKHM 437

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
            MGKRVNYA R+VISPD  L  NE+G+P YFA  LT+P+ VT +N  +L  ++ING E +P
Sbjct: 438  MGKRVNYAARTVISPDISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQAVINGPEQYP 497

Query: 443  GATHYLDK---LSTMRLPPNKKMRISIGRKLDTS-----RGAIVQPGKDSDNEFEGKMVY 494
            GA    D+   L  +     +K RI++ + L TS     RG               K VY
Sbjct: 498  GANFIEDENGHLINLSKESQEK-RIALSKTLLTSHPHAPRGV-------------NKKVY 543

Query: 495  RHLQDGDVVLVNRQPTLHKPSIMAHVVRVL-KGEKTLRMHYANCSTYNADFDGDEMNVHF 553
            RHL  GD VL NRQPTLHKP IM H V+VL K EKTLRMHY+NCSTYNADFDGDEMN+HF
Sbjct: 544  RHLLSGDYVLANRQPTLHKPGIMGHRVKVLGKNEKTLRMHYSNCSTYNADFDGDEMNIHF 603

Query: 554  PQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLY 613
            PQ  ++ AE   I   N QY+ P NG PLR LIQDHI++  LLTK+DT   + +F  +LY
Sbjct: 604  PQSLLASAEIREICANNYQYLVPRNGAPLRGLIQDHILTGVLLTKRDTLFTKADFQAILY 663

Query: 614  SSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGR 673
            +S  S +        P                 P I KP PLW+GKQ+I+A LN +T GR
Sbjct: 664  ASCWSVNTKHPIVTPP-----------------PCILKPVPLWSGKQLISAALNQLTIGR 706

Query: 674  PPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGE 733
             P  +E   K+P   + T+                L  T   H                 
Sbjct: 707  APLNLEAPSKIPTKMWGTK---------------GLEITRDSH----------------- 734

Query: 734  EKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLL 791
                              ++I +N++V G++DK  F  + YGLVHT  ELY  + AG+LL
Sbjct: 735  ------------------VIIRQNEMVAGILDKGHFGASSYGLVHTCYELYDPDVAGSLL 776

Query: 792  SALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEI 851
            + L R+FT +LQ  GFTCGVDDLL+   +E+ R   L  + E G  V   A +  D ++ 
Sbjct: 777  TLLGRMFTNYLQSRGFTCGVDDLLMKNKEEKFRVETLKKANEEGYTV---AAKFADLSKY 833

Query: 852  DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
            D  K +    KA++   +  VA  D  +   LN++T S VI+ L+  G  KP  KN  SL
Sbjct: 834  DEQKARDFFSKALQ--SEREVARLDGLLKKGLNQYT-SKVIDTLIPGGQQKPFPKNNFSL 890

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            MT SGAKGS VNF Q+S  LGQQELEGKRVPRMVSGKTLPSF  +D + RAGGF++DRFL
Sbjct: 891  MTVSGAKGSVVNFSQVSCLLGQQELEGKRVPRMVSGKTLPSFQAYDASARAGGFVMDRFL 950

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            TG+RPQ+Y+FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE L + YD +VR++DGS++Q
Sbjct: 951  TGVRPQDYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVQYDNTVRESDGSVIQ 1010

Query: 1032 FCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMI-YK---K 1087
            F YGED +++ +T +++KF  +A         +++F           +NQE++ Y    K
Sbjct: 1011 FNYGEDSLEIGKTPYLTKFPIIAENYE---LFKSQF--PMEQLIEQLKNQEVVEYNRSIK 1065

Query: 1088 CSGQLD--------------ASNAYIMELPDALKDNAEKFADKFLSN---EMAKQDFLKL 1130
               +LD               S +++ +L   ++ N +K   K  SN   ++ ++DF  L
Sbjct: 1066 TQPELDPVMSKFNPSSDLGCVSESFMNQLNHYIESNPQKLI-KTTSNRDGKINEKDFRNL 1124

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            +   +  S+  PGE VGLL +QS+GEPSTQMTLNTFHLAGRGE NVTLGIPRL+E++  A
Sbjct: 1125 MYLYYSRSMVSPGESVGLLCAQSIGEPSTQMTLNTFHLAGRGEANVTLGIPRLRELIMTA 1184

Query: 1191 SKDIKTPVI 1199
            +    TP++
Sbjct: 1185 TTKPITPLM 1193


>gi|444320219|ref|XP_004180766.1| hypothetical protein TBLA_0E01930 [Tetrapisispora blattae CBS 6284]
 gi|387513809|emb|CCH61247.1| hypothetical protein TBLA_0E01930 [Tetrapisispora blattae CBS 6284]
          Length = 1659

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/1286 (36%), Positives = 678/1286 (52%), Gaps = 184/1286 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCGQ +  CPGH GHI+L VP YNPL FN L+  L+  C +CHHF+    +      K
Sbjct: 62   CSTCGQDEKFCPGHQGHIELPVPCYNPLFFNQLFIYLRSSCLYCHHFRLKSLDTHLYSCK 121

Query: 61   LELI---------------IKGDIIAAKSLDLDLP--------SESSNPEDSDVSNKSSC 97
            L+L+               +KG  I + + D D          S++++ E + V+N  + 
Sbjct: 122  LKLLQYGLIDESYKIESITVKGATIYSDNEDDDEAIEVNSLNASKTNSKESNKVTNAFNN 181

Query: 98   SMVTPRGNYDNVRNLKPQE---------WTSLQFAEAKLALLQFLK--IETTKCGNCKAK 146
             +   R  Y N+   K            +T++   E K  +  F K  +   KC NC   
Sbjct: 182  ELKQKRKEYVNIAIAKALSEGKTTLRGTFTAIVNDERKKLIQDFHKRLLSRGKCDNCGMF 241

Query: 147  NPRISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFN 206
            +P+  K  F  I  N +   +   N  +G    +     ++ + L   S  +  E  +F+
Sbjct: 242  SPKFRKDGFTKIFENALSDKNSVYNQAKGFARKDMIKKAQQARTLNGDSIDENEEIETFD 301

Query: 207  -GTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI 265
             G  P T+      +                     +L ++VK I+  ++  E ++  ++
Sbjct: 302  IGRNPSTKPKTGSTY---------------------ILSTEVKAILNAVFRKEQQVLQYV 340

Query: 266  SDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN 325
               +     K      FF+ V++VPP +FRLPSK GD V E+ Q  LLSK+L  ++ + +
Sbjct: 341  FHARPNLSKKLVKPDAFFMDVIVVPPTRFRLPSKLGDEVHENTQNQLLSKILTTSLLIRD 400

Query: 326  AYVNQP---------DNAKVIVARWMN----LQQSVNVLFDGKNAAGQ---RDMASGICQ 369
                           ++ +VI +R MN    +Q  VN   D   A G     D+  G+ Q
Sbjct: 401  LNDEMSKLQKDKVSLEDRRVIFSRLMNAFVTIQNDVNSFIDSSKAQGNTGGNDVIPGVKQ 460

Query: 370  LLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVK 429
             LEKKEGLFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA++LTYPE VT +N+ +
Sbjct: 461  ALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTSYNIAE 520

Query: 430  LRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRIS-IGRKLDTSRG---AIVQPGKDSD 485
            LR ++ING +  PGA    ++  T+         +S IG  L+  +     ++ P  +S 
Sbjct: 521  LRQAVINGPDKWPGAIQIQNEDGTL---------VSLIGMTLEQRKALANQLMTPSSNSS 571

Query: 486  NEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
            +    K VYRH+++ D+V++NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFD
Sbjct: 572  SHVLNKKVYRHIKNRDIVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFD 631

Query: 546  GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
            GDEMN+HFPQ+E +RAE+  + N ++QY+ P++G P+R LIQDHI +   LT KD+F  R
Sbjct: 632  GDEMNMHFPQNENARAESLFLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTNKDSFFTR 691

Query: 606  DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
            +++ Q +Y         G    + G       +  +++ L P I+KP PLWTGKQ+IT V
Sbjct: 692  EQYQQYIY---------GCIRPEDGH-----ATRAKIVTLPPTIFKPIPLWTGKQIITTV 737

Query: 666  LNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKE 725
            L +IT    P +                               L   NK+  +  GK   
Sbjct: 738  LLNITPSDMPGI------------------------------NLHSKNKIKNEYWGKG-- 765

Query: 726  VVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND-LVRGVIDKAQF--ADYGLVHTVQELY 782
                                  S E  +I+K+  L+ G++DK Q+  + YG+VH++ ELY
Sbjct: 766  ----------------------SNENEVIFKDGALLCGILDKNQYGSSKYGIVHSLHELY 803

Query: 783  GSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEA 842
            G + A  +LS L RLFT ++    FTCG+DDL +  +  + R++ L  S + G++   E 
Sbjct: 804  GPDVAAKVLSVLGRLFTNYITATAFTCGMDDLRLTDEGNKWRRDILKTSVDTGRQAAAEV 863

Query: 843  LELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLK 902
              L      D  +L   +E+ +R    + +   D   +S++N  T S V++  +  G +K
Sbjct: 864  TNLSKDTPADDPELLKRLEEILRDDNKSGI--LDAVTSSKVNAIT-SKVVSTCVPGGTMK 920

Query: 903  PTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRA 962
                N +  M  SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++    A
Sbjct: 921  KFPYNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPTMVSGKTLPSFKPYETDAMA 980

Query: 963  GGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSV 1022
            GG+I  RF +G++PQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + ISYD +V
Sbjct: 981  GGYIKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNTV 1040

Query: 1023 RDADGSIVQFCYGEDGVDVHQTSFISKF-------DALAAR------------ERGRGRG 1063
            RD DG++++F YG D VDV + S++++F       D L  +            E      
Sbjct: 1041 RDGDGTLIEFLYGGDAVDVTKESYMTQFKFCLENYDGLVKKYNPSALIEHLNVESALKYS 1100

Query: 1064 RNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADK----FLS 1119
            +     +  H+ V    Q   Y     + + S  Y+  + +  +D  E+F ++      S
Sbjct: 1101 KKALKYRKKHSSVPHYLQNSKYDPVLAKYNPSK-YLGSVSEKFQDKLEEFLNENSKLVKS 1159

Query: 1120 NE-MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTL 1178
             E + ++ F  L++ K++ SL  PGE VG++ASQSVGEPSTQMTLNTFH AG G  NVTL
Sbjct: 1160 TEGVNEKKFRALMQLKYMRSLIDPGESVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTL 1219

Query: 1179 GIPRLQEILTIASKDIKTPVITCPLL 1204
            GIPR++EI+  AS  IKTP +  P+L
Sbjct: 1220 GIPRMREIIMTASSSIKTPQMNLPIL 1245


>gi|172215|gb|AAA34890.1| RNA polymerase A(I) large subunit [Saccharomyces cerevisiae]
          Length = 1664

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/1281 (37%), Positives = 684/1281 (53%), Gaps = 178/1281 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L VP YNPL FN LY  L+  C FCHHF+    EV +   K
Sbjct: 62   CSTCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACK 121

Query: 61   LELIIKG--------DIIAAKSLDLDLPSESSNPEDS-------------DVSNKSSCSM 99
            L L+  G        D I   SL+  + ++    ED+             D+S+     +
Sbjct: 122  LRLLQYGLIDESYKLDEITLGSLNSSMYTDDEAIEDTEDEMDGEGSKQSKDISSTLLNEL 181

Query: 100  VTPRGNYDNV---------RNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNP 148
             + R  Y ++         R  +   +T+    E K  + +F K  +   KC NC   +P
Sbjct: 182  KSKRSEYVDMAIAKALSDGRTTERGSFTATVNDERKKLVHEFHKKLLSRGKCDNCGMFSP 241

Query: 149  RISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFN-G 207
            +  K  F  I    +    I  N ++G    +     ++ K L  S++  A +  SF+ G
Sbjct: 242  KFRKDGFTKIFETALNEKQITNNRVKGFIRQDMIKKQKQAKKLDGSNEASANDEESFDVG 301

Query: 208  TFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISD 267
              P T      R + GS  +               L ++VK+I++ ++  E  +  ++  
Sbjct: 302  RNPTT------RPKTGSTYI---------------LSTEVKNILDTVFRKEQCVLQYVFH 340

Query: 268  MQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY 327
             +     K      FF+ V++VPP +FRLPSK G+ V E+ Q  LLSKVL  ++ + +  
Sbjct: 341  SRPNLSRKLVKADSFFMDVLVVPPTRFRLPSKLGEEVHENSQNQLLSKVLTTSLLIRDLN 400

Query: 328  VN----QPD-----NAKVIVARWMN----LQQSVNVLFDGKNAAGQ---RDMASGICQLL 371
             +    Q D     + +VI +R MN    +Q  VN   D   A G+   +    G+ Q L
Sbjct: 401  DDLSKLQKDKVSLEDRRVIFSRLMNAFVTIQNDVNAFIDSTKAQGRTSGKVPIPGVKQAL 460

Query: 372  EKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLR 431
            EKKEGLFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA++LTYPE VT +N+ +LR
Sbjct: 461  EKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELR 520

Query: 432  DSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRG---AIVQPGKDSDNEF 488
             ++ING +  PGAT   ++        +  +   IG  ++  +     ++ P  +     
Sbjct: 521  QAVINGPDKWPGATQIQNE--------DGSLVSLIGMSVEQRKALANQLLTPSSNVSTHT 572

Query: 489  EGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 548
              K VYRH+++ DVVL+NRQPTLHK S+M H VRVL  EKTLR+HYAN   YNADFDGDE
Sbjct: 573  LNKKVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDE 632

Query: 549  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
            MN+HFPQ+E +RAEA N+ N ++QY+ P++G P+R LIQDHI +   LT KD+F  R+++
Sbjct: 633  MNMHFPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQY 692

Query: 609  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
             Q +Y         G    + G     +RS+   LP  P I+KP PLWTGKQ+IT VL +
Sbjct: 693  QQYIY---------GCIRPEDGH---TTRSKIVTLP--PTIFKPYPLWTGKQIITTVLLN 738

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
            +T   PP                                 +   N + K+K    K    
Sbjct: 739  VT---PP--------------------------------DMPGINLISKNKI---KNEYW 760

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNT 786
            GK   E E               +L     L+ G++DK+Q+  + YG+VH++ E+YG   
Sbjct: 761  GKGSLENE---------------VLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEV 805

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE 846
            A  +LS L RLFT ++    FTCG+DDL +  +  + R + L  S + G+    E   L+
Sbjct: 806  AAKVLSVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLD 865

Query: 847  DGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
                 D  +L   +++ +R    + +   D   +S++N  T S V+++ + +G +K    
Sbjct: 866  KDTPADDPELLKRLQEILRDNNKSGI--LDAVTSSKVNAIT-SQVVSKCVPDGTMKKFPC 922

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
            N +  M  SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++    AGG++
Sbjct: 923  NSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYV 982

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
              RF +G++PQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + +SYD S+RDAD
Sbjct: 983  KGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDAD 1042

Query: 1027 GSIVQFCYGEDGVDVHQTSFISKFD-------ALAAR------------ERGRGRGRNKF 1067
            G++VQF YG D +D+ + S +++F+       AL  +            E      +   
Sbjct: 1043 GTLVQFMYGGDAIDITKESHMTQFEFCLDNYYALLKKYNPSALIEHLDVESALKYSKKTL 1102

Query: 1068 CDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADK----FLSNE-M 1122
              +  H+      Q + Y     + + +  Y+  + +  +D  E F DK    F S++ +
Sbjct: 1103 KYRKKHSKEPHYKQSVKYDPVLAKYNPAK-YLGSVSENFQDKLESFLDKNSKLFKSSDGV 1161

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
             ++ F  L++ K++ SL  PGE VG++ASQSVGEPSTQMTLNTFH AG G  NVTLGIPR
Sbjct: 1162 NEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPR 1221

Query: 1183 LQEILTIASKDIKTPVITCPL 1203
            L+EI+  AS  IKTP +T P+
Sbjct: 1222 LREIVMTASAAIKTPQMTLPI 1242


>gi|259149818|emb|CAY86622.1| Rpa190p [Saccharomyces cerevisiae EC1118]
          Length = 1664

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/1281 (37%), Positives = 684/1281 (53%), Gaps = 178/1281 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L VP YNPL FN LY  L+  C FCHHF+    EV +   K
Sbjct: 62   CSTCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACK 121

Query: 61   LELIIKG--------DIIAAKSLDLDLPSESSNPEDS-------------DVSNKSSCSM 99
            L L+  G        D I   SL+  + ++    ED+             D+S+     +
Sbjct: 122  LRLLQYGLIDESYKLDEITLGSLNSSMYTDDEAIEDNEDEMDGEGSKQSKDISSTLLNEL 181

Query: 100  VTPRGNYDNV---------RNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNP 148
             + R  Y ++         R  +   +T+    E K  + +F K  +   KC NC   +P
Sbjct: 182  KSKRSEYVDMAIAKALSDGRTTERGSFTATVNDERKKLVHEFHKKLLSRGKCDNCGMFSP 241

Query: 149  RISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFN-G 207
            +  K  F  I    +    I  N ++G    +     ++ K L  S++  A +  SF+ G
Sbjct: 242  KFRKDGFTKIFETALNEKQITNNRVKGFIRQDMIKKQKQAKKLDGSNEASANDEESFDVG 301

Query: 208  TFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISD 267
              P T      R + GS  +               L ++VK+I++ ++  E  +  ++  
Sbjct: 302  RNPTT------RPKTGSTYI---------------LSTEVKNILDTVFRKEQCVLQYVFH 340

Query: 268  MQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY 327
             +     K      FF+ V++VPP +FRLPSK G+ V E+ Q  LLSKVL  ++ + +  
Sbjct: 341  SRPNLSRKLVKADSFFMDVLVVPPTRFRLPSKLGEEVHENSQNQLLSKVLTTSLLIRDLN 400

Query: 328  VN----QPD-----NAKVIVARWMN----LQQSVNVLFDGKNAAGQ---RDMASGICQLL 371
             +    Q D     + +VI +R MN    +Q  VN   D   A G+   +    G+ Q L
Sbjct: 401  DDLSKLQKDKVSLEDRRVIFSRLMNAFVTIQNDVNAFIDSTKAQGRTSGKVPIPGVKQAL 460

Query: 372  EKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLR 431
            EKKEGLFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA++LTYPE VT +N+ +LR
Sbjct: 461  EKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELR 520

Query: 432  DSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRG---AIVQPGKDSDNEF 488
             ++ING +  PGAT   ++        +  +   IG  ++  +     ++ P  +     
Sbjct: 521  QAVINGPDKWPGATQIQNE--------DGSLVSLIGMSVEQRKALANQLLTPSSNVSTHT 572

Query: 489  EGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 548
              K VYRH+++ DVVL+NRQPTLHK S+M H VRVL  EKTLR+HYAN   YNADFDGDE
Sbjct: 573  LNKKVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDE 632

Query: 549  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
            MN+HFPQ+E +RAEA N+ N ++QY+ P++G P+R LIQDHI +   LT KD+F  R+++
Sbjct: 633  MNMHFPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQY 692

Query: 609  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
             Q +Y         G    + G     +RS+   LP  P I+KP PLWTGKQ+IT VL +
Sbjct: 693  QQYIY---------GCIRPEDGH---TTRSKIVTLP--PTIFKPYPLWTGKQIITTVLLN 738

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
            +T   PP                                 +   N + K+K    K    
Sbjct: 739  VT---PP--------------------------------DMPGINLISKNKI---KNEYW 760

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNT 786
            GK   E E               +L     L+ G++DK+Q+  + YG+VH++ E+YG   
Sbjct: 761  GKGSLENE---------------VLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEV 805

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE 846
            A  +LS L RLFT ++    FTCG+DDL +  +  + R + L  S + G+    E   L+
Sbjct: 806  AAKVLSVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLD 865

Query: 847  DGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
                 D  +L   +++ +R    + +   D   +S++N  T S V+++ + +G +K    
Sbjct: 866  KDTPADDPELLKRLQEILRDNNKSGI--LDAVTSSKVNAIT-SQVVSKCVPDGTMKKFPC 922

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
            N +  M  SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++    AGG++
Sbjct: 923  NSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYV 982

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
              RF +G++PQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + +SYD S+RDAD
Sbjct: 983  KGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDAD 1042

Query: 1027 GSIVQFCYGEDGVDVHQTSFISKFD-------ALAAR------------ERGRGRGRNKF 1067
            G++VQF YG D +D+ + S +++F+       AL  +            E      +   
Sbjct: 1043 GTLVQFMYGGDAIDITKESHMTQFEFCLDNYYALLKKYNPSALIEHLDVESALKYSKKTL 1102

Query: 1068 CDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADK----FLSNE-M 1122
              +  H+      Q + Y     + + +  Y+  + +  +D  E F DK    F S++ +
Sbjct: 1103 KYRKKHSKEPHYKQSVKYDPVLAKYNPAK-YLGSVSENFQDKLESFLDKNSKLFKSSDGV 1161

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
             ++ F  L++ K++ SL  PGE VG++ASQSVGEPSTQMTLNTFH AG G  NVTLGIPR
Sbjct: 1162 NEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPR 1221

Query: 1183 LQEILTIASKDIKTPVITCPL 1203
            L+EI+  AS  IKTP +T P+
Sbjct: 1222 LREIVMTASAAIKTPQMTLPI 1242


>gi|398366307|ref|NP_014986.3| Rpa190p [Saccharomyces cerevisiae S288c]
 gi|2507346|sp|P10964.2|RPA1_YEAST RecName: Full=DNA-directed RNA polymerase I subunit RPA190; AltName:
            Full=DNA-directed RNA polymerase I 190 kDa polypeptide;
            Short=A190; AltName: Full=DNA-directed RNA polymerase I
            largest subunit
 gi|1199844|emb|CAA65029.1| O6276 [Saccharomyces cerevisiae]
 gi|1420741|emb|CAA99665.1| RPA190 [Saccharomyces cerevisiae]
 gi|151945418|gb|EDN63661.1| RNA polymerase A [Saccharomyces cerevisiae YJM789]
 gi|256272592|gb|EEU07571.1| Rpa190p [Saccharomyces cerevisiae JAY291]
 gi|285815209|tpg|DAA11102.1| TPA: Rpa190p [Saccharomyces cerevisiae S288c]
 gi|392296668|gb|EIW07770.1| Rpa190p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 1664

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/1281 (37%), Positives = 684/1281 (53%), Gaps = 178/1281 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L VP YNPL FN LY  L+  C FCHHF+    EV +   K
Sbjct: 62   CSTCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACK 121

Query: 61   LELIIKG--------DIIAAKSLDLDLPSESSNPEDS-------------DVSNKSSCSM 99
            L L+  G        D I   SL+  + ++    ED+             D+S+     +
Sbjct: 122  LRLLQYGLIDESYKLDEITLGSLNSSMYTDDEAIEDNEDEMDGEGSKQSKDISSTLLNEL 181

Query: 100  VTPRGNYDNV---------RNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNP 148
             + R  Y ++         R  +   +T+    E K  + +F K  +   KC NC   +P
Sbjct: 182  KSKRSEYVDMAIAKALSDGRTTERGSFTATVNDERKKLVHEFHKKLLSRGKCDNCGMFSP 241

Query: 149  RISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFN-G 207
            +  K  F  I    +    I  N ++G    +     ++ K L  S++  A +  SF+ G
Sbjct: 242  KFRKDGFTKIFETALNEKQITNNRVKGFIRQDMIKKQKQAKKLDGSNEASANDEESFDVG 301

Query: 208  TFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISD 267
              P T      R + GS  +               L ++VK+I++ ++  E  +  ++  
Sbjct: 302  RNPTT------RPKTGSTYI---------------LSTEVKNILDTVFRKEQCVLQYVFH 340

Query: 268  MQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY 327
             +     K      FF+ V++VPP +FRLPSK G+ V E+ Q  LLSKVL  ++ + +  
Sbjct: 341  SRPNLSRKLVKADSFFMDVLVVPPTRFRLPSKLGEEVHENSQNQLLSKVLTTSLLIRDLN 400

Query: 328  VN----QPD-----NAKVIVARWMN----LQQSVNVLFDGKNAAGQ---RDMASGICQLL 371
             +    Q D     + +VI +R MN    +Q  VN   D   A G+   +    G+ Q L
Sbjct: 401  DDLSKLQKDKVSLEDRRVIFSRLMNAFVTIQNDVNAFIDSTKAQGRTSGKVPIPGVKQAL 460

Query: 372  EKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLR 431
            EKKEGLFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA++LTYPE VT +N+ +LR
Sbjct: 461  EKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELR 520

Query: 432  DSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRG---AIVQPGKDSDNEF 488
             ++ING +  PGAT   ++        +  +   IG  ++  +     ++ P  +     
Sbjct: 521  QAVINGPDKWPGATQIQNE--------DGSLVSLIGMSVEQRKALANQLLTPSSNVSTHT 572

Query: 489  EGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 548
              K VYRH+++ DVVL+NRQPTLHK S+M H VRVL  EKTLR+HYAN   YNADFDGDE
Sbjct: 573  LNKKVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDE 632

Query: 549  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
            MN+HFPQ+E +RAEA N+ N ++QY+ P++G P+R LIQDHI +   LT KD+F  R+++
Sbjct: 633  MNMHFPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQY 692

Query: 609  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
             Q +Y         G    + G     +RS+   LP  P I+KP PLWTGKQ+IT VL +
Sbjct: 693  QQYIY---------GCIRPEDGH---TTRSKIVTLP--PTIFKPYPLWTGKQIITTVLLN 738

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
            +T   PP                                 +   N + K+K    K    
Sbjct: 739  VT---PP--------------------------------DMPGINLISKNKI---KNEYW 760

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNT 786
            GK   E E               +L     L+ G++DK+Q+  + YG+VH++ E+YG   
Sbjct: 761  GKGSLENE---------------VLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEV 805

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE 846
            A  +LS L RLFT ++    FTCG+DDL +  +  + R + L  S + G+    E   L+
Sbjct: 806  AAKVLSVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLD 865

Query: 847  DGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
                 D  +L   +++ +R    + +   D   +S++N  T S V+++ + +G +K    
Sbjct: 866  KDTPADDPELLKRLQEILRDNNKSGI--LDAVTSSKVNAIT-SQVVSKCVPDGTMKKFPC 922

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
            N +  M  SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++    AGG++
Sbjct: 923  NSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYV 982

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
              RF +G++PQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + +SYD S+RDAD
Sbjct: 983  KGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDAD 1042

Query: 1027 GSIVQFCYGEDGVDVHQTSFISKFD-------ALAAR------------ERGRGRGRNKF 1067
            G++VQF YG D +D+ + S +++F+       AL  +            E      +   
Sbjct: 1043 GTLVQFMYGGDAIDITKESHMTQFEFCLDNYYALLKKYNPSALIEHLDVESALKYSKKTL 1102

Query: 1068 CDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADK----FLSNE-M 1122
              +  H+      Q + Y     + + +  Y+  + +  +D  E F DK    F S++ +
Sbjct: 1103 KYRKKHSKEPHYKQSVKYDPVLAKYNPAK-YLGSVSENFQDKLESFLDKNSKLFKSSDGV 1161

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
             ++ F  L++ K++ SL  PGE VG++ASQSVGEPSTQMTLNTFH AG G  NVTLGIPR
Sbjct: 1162 NEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPR 1221

Query: 1183 LQEILTIASKDIKTPVITCPL 1203
            L+EI+  AS  IKTP +T P+
Sbjct: 1222 LREIVMTASAAIKTPQMTLPI 1242


>gi|146416717|ref|XP_001484328.1| hypothetical protein PGUG_03709 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1632

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1278 (37%), Positives = 680/1278 (53%), Gaps = 197/1278 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L  PVYNPL FN +Y LL+ +C +CHHF+ +  EV +   K
Sbjct: 62   CATCGLDEKFCPGHQGHIELPTPVYNPLFFNQMYILLRSLCLYCHHFRLNSLEVHRYECK 121

Query: 61   LELIIKGDIIAAKSLD---LDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L+LI  G ++  + LD   ++  S++ + +D +    +S   V P+      R L+ +  
Sbjct: 122  LKLIQYGLLLECEELDNMFVNGKSQAESDDDEEDDEVASSKQVDPKLK----RELRHRRE 177

Query: 118  TSLQFA----------------------EAKLALLQFLK--IETTKCGNCKAKNPRISKP 153
            T +                         E K  L +F K  +   KC NC   +P   K 
Sbjct: 178  TFVDTCIAKAISEGRSSHNGVVTASVGEERKAILHEFSKRLLSRPKCDNCGMYSPTFRKD 237

Query: 154  TFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQ 213
             F  I  N +    +  N ++G    + F        +GASS          NG+ P   
Sbjct: 238  GFTKIFENALRDKQVTNNRVKGLVRPDMFK-------VGASSATS-------NGSMPNI- 282

Query: 214  DTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGF 273
                 +H+        GFK         +L +++++I+  ++E E  +   +     + F
Sbjct: 283  -----KHK-------DGFKY--------VLSTEIRNILRAVFEKEQAIIQKM--FHSRPF 320

Query: 274  -GKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL--ANAYVN- 329
              +K    IFFL  ++VP  +FRLPSK GD + E+ Q  LLS VL+ ++ +   N  ++ 
Sbjct: 321  QTEKVTADIFFLHALIVPATRFRLPSKLGDEIHENSQNELLSNVLKTSLLIRDLNDQIST 380

Query: 330  ------QPDNAKVIVARWMN----LQQSVNVLFDG---KNAAGQRDMASGICQLLEKKEG 376
                    +  K+I  R MN    +Q  VN   D    +NA   +    GI Q LEKKEG
Sbjct: 381  MQKGKLSVEERKIIFNRLMNAFVTIQNDVNAFIDSTKNQNAPAGKVPNPGIKQALEKKEG 440

Query: 377  LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
            LFR+ +MGKRVNYA RSVISPDP L  NEIG+PP FA +LTYPE VT +NV +LR ++IN
Sbjct: 441  LFRKHMMGKRVNYAARSVISPDPMLETNEIGVPPVFAKKLTYPEPVTSYNVSQLRQAVIN 500

Query: 437  GAEIHPGATHYLDKLSTM--RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVY 494
            G E  PGAT   ++  TM   +    + R +I  +L T  G +             K V+
Sbjct: 501  GPEKWPGATQVQNEDGTMVSLVGMTLEQRKAIANQLLTPSGGV---------SVINKKVF 551

Query: 495  RHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFP 554
            RH+++ DVV++NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFDGDEMN+HFP
Sbjct: 552  RHIKNKDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFP 611

Query: 555  QDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYS 614
            Q+E +++EA N+ N ++QY+ P++G PLR LIQDHI +   LT KD+F  R+ + QL+Y 
Sbjct: 612  QNENAKSEALNLANTDSQYLTPTSGSPLRGLIQDHISAGVWLTNKDSFFTREIYQQLIY- 670

Query: 615  SGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRP 674
                    G    + G       S   +L + P I KPEPLWTGKQVIT +L +I     
Sbjct: 671  --------GCIRPEDGH-----TSHSRILTVPPTIIKPEPLWTGKQVITTILLNIKPKNV 717

Query: 675  PFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEE 734
            P V                               L+  NK+  +  G   +         
Sbjct: 718  PGV------------------------------NLTSKNKIKNEYWGVASQ--------- 738

Query: 735  KEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLS 792
                          E ++L    +L+ G++DK+Q+  + +G+VH++ E+YG + AG  LS
Sbjct: 739  --------------ENEVLFRNGELLCGILDKSQYGASQFGIVHSLHEVYGPDVAGKALS 784

Query: 793  ALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID 852
             L RLFT ++ M  FTCG+DDL +  +    RK+ L  S +IG+    E   L+      
Sbjct: 785  VLGRLFTNYIMMTAFTCGMDDLRLTAEGNEWRKDILKKSVDIGRVAAAEVTNLDPTTSST 844

Query: 853  PIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLM 912
              +L   +E  +R   +A +   D    S++N  T S V+++ + EG +K    N +  M
Sbjct: 845  DSELIKRLEGILRDENNAGI--LDAVTQSKVNAIT-SQVVSKCIPEGTMKRFPYNSMQAM 901

Query: 913  TTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLT 972
              SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++   RAGG+I  RF +
Sbjct: 902  ALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDARAGGYIKGRFYS 961

Query: 973  GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQF 1032
            G+RPQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + ++YD SVRD DG+++QF
Sbjct: 962  GIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVAYDNSVRDGDGTLIQF 1021

Query: 1033 CYGEDGVDVHQTSFISKF-------DALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIY 1085
             YG D +D  + S +++F       DAL  +        +   D+  H     R  +   
Sbjct: 1022 LYGGDSIDTTKQSHMNQFKFCVENYDALLTKYNPGDLTHHLNTDEALHYAKKVRKNQ--- 1078

Query: 1086 KKCSGQLDASNAY-------IMELPDALKDNAEKFADK---FLSNE---------MAKQD 1126
            KK +G      AY       +      L   +EKF ++   F+S+          ++++ 
Sbjct: 1079 KKQAGLPHYEQAYKYDPVLSVYNPAKYLGSVSEKFQERLEAFVSDNADLFKKSSGISEKK 1138

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            F  L++ K++ SL  PGE VG++ASQSVGEPSTQMTLNTFH AG G  NVTLGIPR++EI
Sbjct: 1139 FRALMQLKYMRSLINPGESVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRMREI 1198

Query: 1187 LTIASKDIKTPVITCPLL 1204
            +  AS  IKTP +  P+L
Sbjct: 1199 IMTASAAIKTPQMNLPIL 1216


>gi|349581488|dbj|GAA26646.1| K7_Rpa190p [Saccharomyces cerevisiae Kyokai no. 7]
          Length = 1664

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/1281 (37%), Positives = 684/1281 (53%), Gaps = 178/1281 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L VP YNPL FN LY  L+  C FCHHF+    EV +   K
Sbjct: 62   CSTCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACK 121

Query: 61   LELIIKG--------DIIAAKSLDLDLPSESSNPEDS-------------DVSNKSSCSM 99
            L L+  G        D I   SL+  + ++    ED+             D+S+     +
Sbjct: 122  LRLLQYGLIDESYKLDEITLGSLNSSMYTDDEAIEDNEDEMDGEGSKQSKDISSTLLNEL 181

Query: 100  VTPRGNYDNV---------RNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNP 148
             + R  Y ++         R  +   +T+    E K  + +F K  +   KC NC   +P
Sbjct: 182  KSKRSEYVDMAIAKALSDGRTTERGSFTATVNDERKKLVHEFHKKLLSRGKCDNCGMFSP 241

Query: 149  RISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFN-G 207
            +  K  F  I    +    I  N ++G    +     ++ K L  S++  A +  SF+ G
Sbjct: 242  KFRKDGFTKIFETALNEKQITNNRVKGFIRQDMIKKQKQAKKLDGSNEASANDEESFDVG 301

Query: 208  TFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISD 267
              P T      R + GS  +               L ++VK+I++ ++  E  +  ++  
Sbjct: 302  RNPTT------RPKTGSTYI---------------LSTEVKNILDTVFRKEQCVLQYVFH 340

Query: 268  MQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY 327
             +     K      FF+ V++VPP +FRLPSK G+ V E+ Q  LLSKVL  ++ + +  
Sbjct: 341  SRPNLSRKLVKADSFFMDVLVVPPTRFRLPSKLGEEVHENSQNQLLSKVLTTSLLIRDLN 400

Query: 328  VN----QPD-----NAKVIVARWMN----LQQSVNVLFDGKNAAGQ---RDMASGICQLL 371
             +    Q D     + +VI +R MN    +Q  VN   D   A G+   +    G+ Q L
Sbjct: 401  DDLSKLQKDKVSLEDRRVIFSRLMNAFVTIQNDVNAFIDSTKAQGRTSGKVPIPGVKQAL 460

Query: 372  EKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLR 431
            EKKEGLFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA++LTYPE VT +N+ +LR
Sbjct: 461  EKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELR 520

Query: 432  DSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRG---AIVQPGKDSDNEF 488
             ++ING +  PGAT   ++        +  +   IG  ++  +     ++ P  +     
Sbjct: 521  QAVINGPDKWPGATQIQNE--------DGSLVSLIGMSVEQRKALANQLLTPSSNVSTHT 572

Query: 489  EGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 548
              K VYRH+++ DVVL+NRQPTLHK S+M H VRVL  EKTLR+HYAN   YNADFDGDE
Sbjct: 573  LNKKVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDE 632

Query: 549  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
            MN+HFPQ+E +RAEA N+ N ++QY+ P++G P+R LIQDHI +   LT KD+F  R+++
Sbjct: 633  MNMHFPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQY 692

Query: 609  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
             Q +Y         G    + G     +RS+   LP  P I+KP PLWTGKQ+IT VL +
Sbjct: 693  QQYIY---------GCIRPEDGH---TTRSKIVTLP--PTIFKPYPLWTGKQIITTVLLN 738

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
            +T   PP                                 +   N + K+K    K    
Sbjct: 739  VT---PP--------------------------------DMPGINLISKNKI---KNEYW 760

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNT 786
            GK   E E               +L     L+ G++DK+Q+  + YG+VH++ E+YG   
Sbjct: 761  GKGSLENE---------------VLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEV 805

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE 846
            A  +LS L RLFT ++    FTCG+DDL +  +  + R + L  S + G+    E   L+
Sbjct: 806  AAKVLSVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLD 865

Query: 847  DGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
                 D  +L   +++ +R    + +   D   +S++N  T S V+++ + +G +K    
Sbjct: 866  KDTPADDPELLKRLQEILRDNNKSGI--LDAVTSSKVNAIT-SQVVSKCVPDGTMKKFPC 922

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
            N +  M  SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++    AGG++
Sbjct: 923  NSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYV 982

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
              RF +G++PQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + +SYD S+RDAD
Sbjct: 983  KGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDAD 1042

Query: 1027 GSIVQFCYGEDGVDVHQTSFISKFD-------ALAAR------------ERGRGRGRNKF 1067
            G++VQF YG D +D+ + S +++F+       AL  +            E      +   
Sbjct: 1043 GTLVQFMYGGDAIDITKESHMTQFEFCLDNYYALLKKYNPSALIEHLDVESALKYSKKTL 1102

Query: 1068 CDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADK----FLSNE-M 1122
              +  H+      Q + Y     + + +  Y+  + +  +D  E F DK    F S++ +
Sbjct: 1103 KYRKKHSKEPHYKQSVKYDPVLAKYNPAK-YLGSVSENFQDKLESFLDKNSKLFKSSDGV 1161

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
             ++ F  L++ K++ SL  PGE VG++ASQSVGEPSTQMTLNTFH AG G  NVTLGIPR
Sbjct: 1162 NEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPR 1221

Query: 1183 LQEILTIASKDIKTPVITCPL 1203
            L+EI+  AS  IKTP +T P+
Sbjct: 1222 LREIVMTASAAIKTPQMTLPI 1242


>gi|190347356|gb|EDK39611.2| hypothetical protein PGUG_03709 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1632

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1278 (37%), Positives = 679/1278 (53%), Gaps = 197/1278 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L  PVYNPL FN +Y LL+  C +CHHF+ +  EV +   K
Sbjct: 62   CATCGLDEKFCPGHQGHIELPTPVYNPLFFNQMYILLRSSCLYCHHFRLNSLEVHRYECK 121

Query: 61   LELIIKGDIIAAKSLD---LDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L+LI  G ++  + LD   ++  S++ + +D +    +S   V P+      R L+ +  
Sbjct: 122  LKLIQYGLLLECEELDNMFVNGKSQAESDDDEEDDEVASSKQVDPKLK----RELRHRRE 177

Query: 118  TSLQFA----------------------EAKLALLQFLK--IETTKCGNCKAKNPRISKP 153
            T +                         E K  L +F K  +   KC NC   +P   K 
Sbjct: 178  TFVDTCIAKAISEGRSSHNGVVTASVGEERKAILHEFSKRLLSRPKCDNCGMYSPTFRKD 237

Query: 154  TFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQ 213
             F  I  N +    +  N ++G    + F        +GASS          NG+ P   
Sbjct: 238  GFTKIFENALRDKQVTNNRVKGLVRPDMFK-------VGASSATS-------NGSMPNI- 282

Query: 214  DTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGF 273
                 +H+        GFK         +L +++++I+  ++E E  +   +     + F
Sbjct: 283  -----KHK-------DGFKY--------VLSTEIRNILRAVFEKEQAIIQKM--FHSRPF 320

Query: 274  -GKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL--ANAYVN- 329
              +K    IFFL  ++VP  +FRLPSK GD + E+ Q  LLS VL+ ++ +   N  ++ 
Sbjct: 321  QTEKVTADIFFLHALIVPATRFRLPSKLGDEIHENSQNELLSNVLKTSLLIRDLNDQIST 380

Query: 330  ------QPDNAKVIVARWMN----LQQSVNVLFDG---KNAAGQRDMASGICQLLEKKEG 376
                    +  K+I  R MN    +Q  VN   D    +NA   +    GI Q LEKKEG
Sbjct: 381  MQKGKLSVEERKIIFNRLMNAFVTIQNDVNAFIDSTKNQNAPAGKVPNPGIKQALEKKEG 440

Query: 377  LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
            LFR+ +MGKRVNYA RSVISPDP L  NEIG+PP FA +LTYPE VT +NV +LR ++IN
Sbjct: 441  LFRKHMMGKRVNYAARSVISPDPMLETNEIGVPPVFAKKLTYPEPVTSYNVSQLRQAVIN 500

Query: 437  GAEIHPGATHYLDKLSTM--RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVY 494
            G E  PGAT   ++  TM   +    + R +I  +L T  G +             K V+
Sbjct: 501  GPEKWPGATQVQNEDGTMVSLVGMTLEQRKAIANQLLTPSGGV---------SVINKKVF 551

Query: 495  RHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFP 554
            RH+++ DVV++NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFDGDEMN+HFP
Sbjct: 552  RHIKNKDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFP 611

Query: 555  QDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYS 614
            Q+E +++EA N+ N ++QY+ P++G PLR LIQDHI +   LT KD+F  R+ + QL+Y 
Sbjct: 612  QNENAKSEALNLANTDSQYLTPTSGSPLRGLIQDHISAGVWLTNKDSFFTREIYQQLIY- 670

Query: 615  SGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRP 674
                    G    + G       S   +L + P I KPEPLWTGKQVIT +L +I     
Sbjct: 671  --------GCIRPEDGH-----TSHSRILTVPPTIIKPEPLWTGKQVITTILLNIKPKNV 717

Query: 675  PFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEE 734
            P V                               L+  NK+  +  G   +         
Sbjct: 718  PGV------------------------------NLTSKNKIKNEYWGVASQ--------- 738

Query: 735  KEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLS 792
                          E ++L    +L+ G++DK+Q+  + +G+VH++ E+YG + AG  LS
Sbjct: 739  --------------ENEVLFRNGELLCGILDKSQYGASQFGIVHSLHEVYGPDVAGKALS 784

Query: 793  ALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID 852
             L RLFT ++ M  FTCG+DDL +  +    RK+ L  S +IG+    E   L+      
Sbjct: 785  VLGRLFTNYIMMTAFTCGMDDLRLTAEGNEWRKDILKKSVDIGRVAAAEVTNLDPTTSST 844

Query: 853  PIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLM 912
              +L   +E  +R   +A +   D    S++N  T S V+++ + EG +K    N +  M
Sbjct: 845  DSELIKRLEGILRDENNAGI--LDAVTQSKVNAIT-SQVVSKCIPEGTMKRFPYNSMQAM 901

Query: 913  TTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLT 972
              SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++   RAGG+I  RF +
Sbjct: 902  ALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDARAGGYIKGRFYS 961

Query: 973  GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQF 1032
            G+RPQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + ++YD SVRD DG+++QF
Sbjct: 962  GIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVAYDNSVRDGDGTLIQF 1021

Query: 1033 CYGEDGVDVHQTSFISKF-------DALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIY 1085
             YG D +D  + S +++F       DAL  +        +   D+  H     R  +   
Sbjct: 1022 LYGGDSIDTTKQSHMNQFKFCVENYDALLTKYNPGDLTHHLNTDEALHYAKKVRKNQ--- 1078

Query: 1086 KKCSGQLDASNAY-------IMELPDALKDNAEKFADK---FLSNE---------MAKQD 1126
            KK +G      AY       +      L   +EKF ++   F+S+          ++++ 
Sbjct: 1079 KKQAGLPHYEQAYKYDPVLSVYNPAKYLGSVSEKFQERLEAFVSDNADLFKKSSGISEKK 1138

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            F  L++ K++ SL  PGE VG++ASQSVGEPSTQMTLNTFH AG G  NVTLGIPR++EI
Sbjct: 1139 FRALMQLKYMRSLINPGESVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRMREI 1198

Query: 1187 LTIASKDIKTPVITCPLL 1204
            +  AS  IKTP +  P+L
Sbjct: 1199 IMTASAAIKTPQMNLPIL 1216


>gi|365989414|ref|XP_003671537.1| hypothetical protein NDAI_0H01200 [Naumovozyma dairenensis CBS 421]
 gi|343770310|emb|CCD26294.1| hypothetical protein NDAI_0H01200 [Naumovozyma dairenensis CBS 421]
          Length = 1669

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/1284 (36%), Positives = 675/1284 (52%), Gaps = 181/1284 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C +CG  +  CPGH GHI+L VP YNPL FN LY  L+  C FCHH K  + EV +   K
Sbjct: 62   CSSCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRTSCLFCHHLKLKQIEVHRFACK 121

Query: 61   LELIIKGDIIAAKSLD-------LDLPSESSNPEDSDVSNKSSCSMVTPRGNYDN----V 109
            L L+  G I  +  +D        D    +   ED  + +       T R   D     +
Sbjct: 122  LRLLQYGLIDESYKIDDINIGDLKDFLENAQAEEDEAIEDNKLNESTTKRDANDISAQLL 181

Query: 110  RNL--KPQEWTSLQFA--------------------EAKLALLQFLKIETT--KCGNCKA 145
            R+L  K +E+  +  A                    E K  + +F K   T  KC NC  
Sbjct: 182  RDLQQKREEYVEVVIATAISEGRTTERGIFTATVNDERKNLIHEFHKKLLTRGKCDNCGM 241

Query: 146  KNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSF 205
             +P+  K  F  I    +    +  N +RG    +      + K L   +  D    + F
Sbjct: 242  FSPKFRKDGFTKIFETALNEKQLTNNRVRGFIRQDMIKKQNQSKALNGETTKDDENENGF 301

Query: 206  N-GTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSF 264
            + G  P        R + GS  +               L ++V++I+  ++  E  +  +
Sbjct: 302  DLGRNPTV------RPKTGSTYI---------------LSTEVRNILRAVFRKEQNIFKY 340

Query: 265  ISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA 324
            I   +           +FF+ V++VPP +FRLPSK GD + E+ Q  LLSK+L   + + 
Sbjct: 341  IFHSKPNVSSTPISADMFFMDVIVVPPTRFRLPSKLGDEIHENSQNQLLSKILTTALLIR 400

Query: 325  NAYVNQP---------DNAKVIVARWMN----LQQSVNVLFDGKNAAGQ---RDMASGIC 368
            +               D+ +VI +R MN    +Q  VN   D   A G    +    G+ 
Sbjct: 401  DLNDEMSKLQKDKVSVDDRRVIFSRLMNAFVTIQNDVNAFIDSTKAQGTTGGKVPIPGVK 460

Query: 369  QLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVV 428
            Q LEKKEGLFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA +LTYPE VT +N+ 
Sbjct: 461  QALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTSYNIA 520

Query: 429  KLRDSIINGAEIHPGATHYLDKLSTM--RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN 486
            +LR ++ING +  PGA    ++  ++   +  + + R ++  +L T       P  +   
Sbjct: 521  ELRQAVINGPDKWPGAAQIQNEDGSLVSLVGMSAEQRKALANQLMT-------PSSNVGT 573

Query: 487  EFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDG 546
                K VYRH+++ D+V++NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFDG
Sbjct: 574  HTLNKKVYRHIKNRDIVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDG 633

Query: 547  DEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRD 606
            DEMN+HFPQ+E +RAEA+N+ N ++QY+ P++G P+R LIQDHI +   LT KD+F  R+
Sbjct: 634  DEMNMHFPQNENARAEAFNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTRE 693

Query: 607  EFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL 666
            ++ Q +Y         G    + G       +  +++ L P I+KP PLWTGKQ+I+ VL
Sbjct: 694  QYQQYIY---------GCIRPEDGH-----ATRPKLITLPPTIYKPVPLWTGKQIISTVL 739

Query: 667  NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEV 726
             ++T    P +                               L+ +NK+  +  GK    
Sbjct: 740  LNVTPADMPGI------------------------------NLTSSNKIKNEYWGKS--- 766

Query: 727  VEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYG 783
                                 S E  +++KN +L+ G++DK+Q+  + +G+VH++ E+YG
Sbjct: 767  ---------------------SNENEVLFKNGELLCGILDKSQYGASKFGIVHSLHEVYG 805

Query: 784  SNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL 843
             + A  +LS L RLFT ++    FTCG+DDL + ++  + R + L  S + G+    E  
Sbjct: 806  PSIAAKVLSVLGRLFTNYIMSTAFTCGMDDLRLSEEGNKWRSDILKTSVDTGREAAAEVT 865

Query: 844  ELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKP 903
             L+     D  +L   +E+ +R    + +   D   +S++N  T S V+++ + +G +K 
Sbjct: 866  NLDKDTAADDAELLKRLEEILRDNNKSGI--LDAVTSSKVNSIT-SKVVSKCVPDGTMKK 922

Query: 904  TGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAG 963
               N +  M  SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++    AG
Sbjct: 923  FPYNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAG 982

Query: 964  GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
            G+I  RF +G++PQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + +SYD SVR
Sbjct: 983  GYIKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVR 1042

Query: 1024 DADGSIVQFCYGEDGVDV----HQTSF---ISKFDALAAR------------ERGRGRGR 1064
            D DG+++QF YG D VDV    H T F   +  +DAL  +            E      +
Sbjct: 1043 DGDGTLIQFLYGGDAVDVTKESHMTEFDFCLDNYDALLNKYNPSALIEHLDVETALKYSK 1102

Query: 1065 NKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADK----FLSN 1120
                ++  H           Y     + + +  Y+  + +  +D  E + DK    F S+
Sbjct: 1103 KTLKNRKKHAKEAHHKNATKYDPVLSKFNPAK-YLGSVSEKFQDKLESYLDKNSKLFKSH 1161

Query: 1121 E-MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            + ++++ F  L++ K++ SL  PGE VG++ASQSVGEPSTQMTLNTFH AG G  NVTLG
Sbjct: 1162 DNVSEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLG 1221

Query: 1180 IPRLQEILTIASKDIKTPVITCPL 1203
            IPR++EI+  AS  IKTP +T P+
Sbjct: 1222 IPRMREIIMTASAAIKTPQMTLPI 1245


>gi|50312167|ref|XP_456115.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49645251|emb|CAG98823.1| KLLA0F23243p [Kluyveromyces lactis]
          Length = 1653

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/1283 (37%), Positives = 676/1283 (52%), Gaps = 182/1283 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L VP YNPL FN LY  L+  C FCHHF+    EV     K
Sbjct: 62   CATCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRLKSSEVHLYACK 121

Query: 61   LELIIKGDIIAAKSLD-------LDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNL- 112
            L L+    I     +D       +D        E++D++ K++ S     G    +R L 
Sbjct: 122  LRLLQYALIDERYQIDNIRINQMVDEDEAEEGEEEADINGKTTNS----SGTQHALRELR 177

Query: 113  -KPQEWTSLQFAEA--------------------KLALLQFLK--IETTKCGNCKAKNPR 149
             K  E+  +  A+A                    K  +  F K  +   KC NC   +P+
Sbjct: 178  RKRNEFVDMAIAKALSEGRTTEHGTFTATVNDERKALIHDFHKRLLSRPKCDNCGMFSPK 237

Query: 150  ISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTF 209
              K  F  I    +    I  N ++G    +      + K L  +       +   +G F
Sbjct: 238  FRKDGFTKIFETALTDKQITNNRVKGLIRQDMIKKKNQMKKLQVNDTSSESASRDEDGEF 297

Query: 210  PGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQ 269
                         G+   P   K +    S  +L ++V++I+  ++ +E E+  ++   +
Sbjct: 298  -------------GTARSPVNLKPKTG--STYILSTEVRNILRAVFRSEQEVLQYVFFSR 342

Query: 270  QQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVN 329
                 K     +FF+ V++VPP +FRLPSK GD V E+ Q  LLSK+L  ++ + +    
Sbjct: 343  PNHNKKIVTADMFFMEVLIVPPTRFRLPSKLGDEVHENTQNQLLSKILTTSLLIRDLNDE 402

Query: 330  ---------QPDNAKVIVARWMN----LQQSVNVLFD---GKNAAGQRDMASGICQLLEK 373
                       D+ KVI  R MN    +Q  VN   D    ++++G +    G+ Q LEK
Sbjct: 403  MSRLQKDKVSADDRKVIFNRLMNAFVTIQNDVNAFIDSTKAQSSSGNKVPIPGLKQALEK 462

Query: 374  KEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDS 433
            KEGLFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA +LTYPE VT +NV +LR +
Sbjct: 463  KEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTAYNVAELRQA 522

Query: 434  IINGAEIHPGATHYLDK------LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNE 487
            +ING +  PGAT   ++      L  M L   K +              ++ P       
Sbjct: 523  VINGPDKWPGATQIQNEDGSFVSLVGMTLEQRKALA-----------NQLLTPSTHDVAH 571

Query: 488  FEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGD 547
               K VYRH+++ DVV++NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFDGD
Sbjct: 572  SINKKVYRHIKNRDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGD 631

Query: 548  EMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDE 607
            EMN+HFPQ+E ++AEA N+ N ++QY+ P++G P+R LIQDHI +   LT KD+F  R++
Sbjct: 632  EMNMHFPQNENAKAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQ 691

Query: 608  FCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLN 667
            + Q +Y         G    + G     +R++   +P  PA+ KPEPLWTGKQ+IT VL 
Sbjct: 692  YQQYIY---------GCIRPEDGH---ATRNKLVTIP--PAVMKPEPLWTGKQIITTVLL 737

Query: 668  HITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVV 727
            +      P +                               L+  NK+  +  GK     
Sbjct: 738  NTCPANMPGI------------------------------NLNSKNKIKNEYWGKS---- 763

Query: 728  EGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGS 784
                                SEE  +++K+  L+ G++DK+Q+  + +G+VH++ E+YG 
Sbjct: 764  --------------------SEENNVVFKDGQLLCGILDKSQYGASKFGIVHSLHEVYGP 803

Query: 785  NTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALE 844
            + A  +LS L RLFT ++    FTCG+DDL +  +  + R + L  S +IG+    E   
Sbjct: 804  DVAAKVLSVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRNDILQTSVDIGRVAAAEVTN 863

Query: 845  LEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPT 904
            L+   + D  +L   +E+ +R   D  +   D   +S++N  T S V+++ + +G +K  
Sbjct: 864  LDKDVKSDDGELLKRLEEILR--DDNKLGILDAITSSKVNSIT-SQVVSKCVPDGTMKKF 920

Query: 905  GKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGG 964
              N +  M  SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++   RAGG
Sbjct: 921  PYNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGG 980

Query: 965  FIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD 1024
            +I  RF +G+RPQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + ISYD SVRD
Sbjct: 981  YIKGRFYSGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNSVRD 1040

Query: 1025 ADGSIVQFCYGEDGVDV----HQTSF---ISKFDALAAR------------ERGRGRGRN 1065
             DG+++QF YG D VD+    H T F   +  +DAL  +            E      + 
Sbjct: 1041 GDGTLIQFLYGGDAVDITKESHMTEFKFCVDNYDALLKKYNPSALVDHLDVESALKYSKK 1100

Query: 1066 KFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFA---DKFLSNE- 1121
               ++  ++ +    Q   Y     + + S  Y+  + +  +D  EKF    D F   + 
Sbjct: 1101 TLKNRKKNSKLPHYAQTSKYDPVLSKFNPSK-YLGAVSENFQDKLEKFISTNDDFFKKDE 1159

Query: 1122 -MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGI 1180
             + ++ F  L++ K++ SL  PGE VG++ASQSVGEPSTQMTLNTFH AG G  NVTLGI
Sbjct: 1160 NVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGI 1219

Query: 1181 PRLQEILTIASKDIKTPVITCPL 1203
            PR++EI+  AS  IKTP +T P+
Sbjct: 1220 PRMREIIMTASAAIKTPQLTMPI 1242


>gi|190407636|gb|EDV10903.1| RNA polymerase I subunit [Saccharomyces cerevisiae RM11-1a]
          Length = 1664

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/1281 (37%), Positives = 683/1281 (53%), Gaps = 178/1281 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L VP YNPL FN LY  L+  C FCHHF+    EV +   K
Sbjct: 62   CSTCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACK 121

Query: 61   LELIIKG--------DIIAAKSLDLDLPSESSNPEDS-------------DVSNKSSCSM 99
            L L+  G        D I   SL+  + ++    ED+             D+S      +
Sbjct: 122  LRLLQYGLIDESYKLDEITLGSLNSSMYTDDEAIEDNEDEMDGEGSKQSKDISFTLLNEL 181

Query: 100  VTPRGNYDNV---------RNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNP 148
             + R  Y ++         R  +   +T+    E K  + +F K  +   KC NC   +P
Sbjct: 182  KSKRSEYVDMAIAKALSDGRTTERGSFTATVNDERKKLVHEFHKKLLSRGKCDNCGMFSP 241

Query: 149  RISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFN-G 207
            +  K  F  I    +    I  N ++G    +     ++ K L  S++  A +  SF+ G
Sbjct: 242  KFRKDGFTKIFETALNEKQITNNRVKGFIRQDMIKKQKQAKKLDGSNEASANDEESFDVG 301

Query: 208  TFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISD 267
              P T      R + GS  +               L ++VK+I++ ++  E  +  ++  
Sbjct: 302  RNPTT------RPKTGSTYI---------------LSTEVKNILDTVFRKEQCVLQYVFH 340

Query: 268  MQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY 327
             +     K      FF+ V++VPP +FRLPSK G+ V E+ Q  LLSKVL  ++ + +  
Sbjct: 341  SRPNLSRKLVKADSFFMDVLVVPPTRFRLPSKLGEEVHENSQNQLLSKVLTTSLLIRDLN 400

Query: 328  VN----QPD-----NAKVIVARWMN----LQQSVNVLFDGKNAAGQ---RDMASGICQLL 371
             +    Q D     + +VI +R MN    +Q  VN   D   A G+   +    G+ Q L
Sbjct: 401  DDLSKLQKDKVSLEDRRVIFSRLMNAFVTIQNDVNAFIDSTKAQGRTSGKVPIPGVKQAL 460

Query: 372  EKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLR 431
            EKKEGLFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA++LTYPE VT +N+ +LR
Sbjct: 461  EKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELR 520

Query: 432  DSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRG---AIVQPGKDSDNEF 488
             ++ING +  PGAT   ++        +  +   IG  ++  +     ++ P  +     
Sbjct: 521  QAVINGPDKWPGATQIQNE--------DGSLVSLIGMSVEQRKALANQLLTPSSNVSTHT 572

Query: 489  EGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 548
              K VYRH+++ DVVL+NRQPTLHK S+M H VRVL  EKTLR+HYAN   YNADFDGDE
Sbjct: 573  LNKKVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDE 632

Query: 549  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
            MN+HFPQ+E +RAEA N+ N ++QY+ P++G P+R LIQDHI +   LT KD+F  R+++
Sbjct: 633  MNMHFPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQY 692

Query: 609  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
             Q +Y         G    + G     +RS+   LP  P I+KP PLWTGKQ+IT VL +
Sbjct: 693  QQYIY---------GCIRPEDGH---TTRSKIVTLP--PTIFKPYPLWTGKQIITTVLLN 738

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
            +T   PP                                 +   N + K+K    K    
Sbjct: 739  VT---PP--------------------------------DMPGINLISKNKI---KNEYW 760

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNT 786
            GK   E E               +L     L+ G++DK+Q+  + YG+VH++ E+YG   
Sbjct: 761  GKGSLENE---------------VLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEV 805

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE 846
            A  +LS L RLFT ++    FTCG+DDL +  +  + R + L  S + G+    E   L+
Sbjct: 806  AAKVLSVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLD 865

Query: 847  DGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
                 D  +L   +++ +R    + +   D   +S++N  T S V+++ + +G +K    
Sbjct: 866  KDTPADDPELLKRLQEILRDNNKSGI--LDAVTSSKVNAIT-SQVVSKCVPDGTMKKFPC 922

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
            N +  M  SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++    AGG++
Sbjct: 923  NSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYV 982

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
              RF +G++PQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + +SYD S+RDAD
Sbjct: 983  KGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDAD 1042

Query: 1027 GSIVQFCYGEDGVDVHQTSFISKFD-------ALAAR------------ERGRGRGRNKF 1067
            G++VQF YG D +D+ + S +++F+       AL  +            E      +   
Sbjct: 1043 GTLVQFMYGGDAIDITKESHMTQFEFCLDNYYALLKKYNPSALIEHLDVESALKYSKKTL 1102

Query: 1068 CDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADK----FLSNE-M 1122
              +  H+      Q + Y     + + +  Y+  + +  +D  E F DK    F S++ +
Sbjct: 1103 KYRKKHSKEPHYKQSVKYDPVLAKYNPAK-YLGSVSEKFQDKLESFLDKNSKLFKSSDGV 1161

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
             ++ F  L++ K++ SL  PGE VG++ASQSVGEPSTQMTLNTFH AG G  NVTLGIPR
Sbjct: 1162 NEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPR 1221

Query: 1183 LQEILTIASKDIKTPVITCPL 1203
            L+EI+  AS  IKTP +T P+
Sbjct: 1222 LREIVMTASAAIKTPQMTLPI 1242


>gi|353240973|emb|CCA72815.1| probable DNA-directed RNA polymerase I [Piriformospora indica DSM
            11827]
          Length = 1755

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1324 (37%), Positives = 705/1324 (53%), Gaps = 189/1324 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC    F CPGHFGHI+L  PVY+PL   + Y LL+  C FCHHFKASR  V K + K
Sbjct: 63   CATCHLDYFQCPGHFGHIELPAPVYHPLFMMVTYKLLRSTCLFCHHFKASRLHVAKTIGK 122

Query: 61   LELIIKGDIIAAKSLDL-DLPSESSNPEDSD--VSNKSSCSM-VTPRGNYDNVRNLKPQE 116
            L L+ +G + AA +LD  +   E S  ++++  V  K +  + +    N  +  N K  +
Sbjct: 123  LRLLERGLLEAANALDAANFADEKSKDDEAEQVVEEKIAQKVELYVNINLQHATNAKRGD 182

Query: 117  WTSLQFAEA-KLALLQFLKIETTKCGNCKAKNPRISKPTF------GWIHMNGMP----- 164
            +      +A K A+ +FL++       C+ K    +  TF        I  +  P     
Sbjct: 183  YKDGPVYQARKAAIDEFLRVALASAKKCQRKQCGAAAYTFRKDGHTKIIEYDLTPKQKVQ 242

Query: 165  --HADIR--------ANLIRGCNLGET---FSGGEEEKDLGASSDVDAPETHSFNGTFPG 211
              H  +R        A + R     ET    +  +   + G+  +VD         T  G
Sbjct: 243  LDHLGLRRPDAFAYDAAIHRQTIPRETEKRITKSDSRSESGSEMEVDEEINDEEMETDEG 302

Query: 212  T-QDTAARRH--QKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI--- 265
            +  DTA   H  +  +G +     + + + +    P +V+  +  L+ NE  +CS I   
Sbjct: 303  SGDDTAEVVHVARAANGRIKGARGRNERVVA----PEEVRAHLRWLFRNESTICSLIFGR 358

Query: 266  ----SDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANI 321
                + +   GF   +   IFFL V+ V P +FR P+K G+ + EHP    L+KV+  + 
Sbjct: 359  QGPYAPVNASGFSPVSA-DIFFLEVLAVSPTRFRPPAKMGEQLFEHPHNQHLTKVINTSY 417

Query: 322  YLANAYVN-----------QPDNAKVIVARWMN----LQQSVNVLFDG-KNAAGQRD--- 362
             L +                 +    I+AR       LQ  VN   D  KN    R    
Sbjct: 418  NLRDITAQLRAGSVKESTMSSEERNRILARLFETLIVLQTDVNSYIDSSKNPTPTRQGKL 477

Query: 363  MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERV 422
               GI Q LEKKEGLFR  +MGKRVNYA RSVISPD  +  NEIGIPP FA +LT+PE V
Sbjct: 478  PTPGIKQGLEKKEGLFRMHMMGKRVNYAARSVISPDVNIETNEIGIPPVFARKLTFPEPV 537

Query: 423  TPWNVVKLRDSIINGA-----------EIHPGATHYLDKLSTMRLPPNKKMRISIGRKLD 471
            T  NV +LR+ +I G+           +   G T  LDKL       N + R +I  +L 
Sbjct: 538  TQHNVTELRELVIRGSNPKEGPGANMVQFEDGQTQSLDKL-------NLEQRTAIANQLL 590

Query: 472  TSRGA-----IVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKG 526
            T +        ++P         GK VYRHL+DGD++++NRQPTLHKPS+M H  R+L G
Sbjct: 591  TPKELEKNVNTLRPRA----PVVGKKVYRHLRDGDMLILNRQPTLHKPSMMTHKARILPG 646

Query: 527  EKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLI 586
            EKT+RMHYANC++YNADFDGDEMNVHFPQ ++SR+EA+N+   ++QY+ P++G PLR LI
Sbjct: 647  EKTIRMHYANCNSYNADFDGDEMNVHFPQSQLSRSEAFNLSCTDDQYLVPTSGKPLRGLI 706

Query: 587  QDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLL 646
            QDH+V    LT K +F  R+E+ QL+Y +    +   ++TG           +  +  + 
Sbjct: 707  QDHVVGGLWLTNKSSFFTREEYQQLVYGALRPEN---NYTG-----------DGRIHMVP 752

Query: 647  PAIWKPEPLWTGKQVITAVLNHIT-RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKND 705
            PAI KP+PLWTGKQ+I+ +L +IT R   P  V+   ++ +  +           R +N 
Sbjct: 753  PAILKPQPLWTGKQIISTILKNITPRNASPLTVKSAAQVKEASW----------GRPRNI 802

Query: 706  KGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVID 765
                  ++ + KD+S  K                    E+ LSEE++L++  +LVRGV+D
Sbjct: 803  HPSNWDSDDVKKDRSQDK-------------------YERNLSEERVLVFGGELVRGVLD 843

Query: 766  KAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERE 823
            K+QF  + YGLVH+V ++YG+  AG LLS  SRLFT +LQ   FTC +DDL++  + E+ 
Sbjct: 844  KSQFGASAYGLVHSVYDVYGAEVAGRLLSIFSRLFTKYLQHRAFTCRMDDLVLTDEGEKA 903

Query: 824  RKNHLHGSEEIGKRVHLEAL----------ELEDGAEIDPIKLKSEIEKAMRGGGDAAVA 873
            RK+ +      G                  E E  AE+D +     +EK +R   DA +A
Sbjct: 904  RKSTMASGATFGTEAATSFFSDLSQSTKKNEAEKKAELDRL-----LEKVLR--DDAQMA 956

Query: 874  YFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQ 933
              D  +  ++     + +  +++  GLL+P   N +  MTTSGAKGS  N +QIS+ LGQ
Sbjct: 957  GLDNIVKGKMTGLFEAVI--KVIPNGLLRPFPDNHMQAMTTSGAKGSSTNARQISALLGQ 1014

Query: 934  QELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDT 993
            QELEG+RVP MVSGKTLPSF P++ A  AGG++  RFLTGL+PQE+YFHCMAGREGL+DT
Sbjct: 1015 QELEGRRVPVMVSGKTLPSFRPFETAAIAGGYVASRFLTGLKPQEFYFHCMAGREGLIDT 1074

Query: 994  AVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDAL 1053
            AVKTSRSGYLQRCLIK+LE +++ YD++VR AD ++ QF YGEDG+DV +   +SKF   
Sbjct: 1075 AVKTSRSGYLQRCLIKHLEGIQVHYDHTVRGADSAVYQFLYGEDGLDVTRQMHLSKFGFN 1134

Query: 1054 AARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKC----------------------SGQ 1091
               +R       KF  K     +   N     K+                       S  
Sbjct: 1135 LKNQRSLA---TKFAAKALAGIIDEENANDHMKRVMKKKRKHPDRPLPDPTINTFFPSRH 1191

Query: 1092 LDA-SNAYIMELPDALKDNAEKF--------ADKFLSNEMAKQDFLKLVKHKFVLSLAQP 1142
            L A S  +  EL D +  N              + +   +  + F  L+  +++ SL +P
Sbjct: 1192 LGAVSEQFAQELDDYISQNKNHLLIVKGNINGRQAIEPTLPSKVFKSLMSVRYIRSLVEP 1251

Query: 1143 GEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCP 1202
            GE VGLLASQ VGEPSTQMTLNTFH AG G  NVTLGIPRL+EI+  A+ + KTP++T P
Sbjct: 1252 GEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTAAVNPKTPMMTLP 1311

Query: 1203 LLVG 1206
            ++ G
Sbjct: 1312 IVKG 1315


>gi|294655924|ref|XP_002770194.1| DEHA2C10670p [Debaryomyces hansenii CBS767]
 gi|199430718|emb|CAR65558.1| DEHA2C10670p [Debaryomyces hansenii CBS767]
          Length = 1644

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1282 (37%), Positives = 680/1282 (53%), Gaps = 197/1282 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L VPVYNPL FN LY  L+  C +CH+F+ +  EV +   K
Sbjct: 62   CTTCGLDEKFCPGHQGHIELPVPVYNPLFFNQLYIFLRSSCLYCHNFRYNSLEVHRYECK 121

Query: 61   LELIIKGDIIAAKSLD-LDLPSESSNPEDSDVSNKSSCSMVTPRGN----------YDNV 109
            L LI  G ++    LD + +    +N +D D  + SS     PR             D  
Sbjct: 122  LRLIQYGLLLECIELDNMLMKGAENNDDDDDDEDGSSSKNADPRAKKELRERRELFVDTA 181

Query: 110  RNLKPQEWTSLQFA--------EAKLALLQFLK--IETTKCGNCKAKNPRISKPTFGWIH 159
                  E  S QF         E K  + +F K  +   KC NC   +    K  F  I 
Sbjct: 182  IAKAISEGRSSQFGVITASVGEERKATIHEFYKKLLSRPKCDNCGMYSATFRKDGFTKIF 241

Query: 160  MNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARR 219
             N +    +  N ++G    +           G+S++ D+ +T+         ++  + +
Sbjct: 242  ENALKDKQVTNNRVKGLKRPDVLK-------TGSSANNDSNQTN---------ENIPSIK 285

Query: 220  HQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGH 279
            H+ GS  V               L +++++I+  +++ E  +        Q+ F  +  H
Sbjct: 286  HKGGSKYV---------------LSTEIRNILRSVFQKEQRII-------QKLFHSRPHH 323

Query: 280  S------IFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL--ANAYVNQ- 330
            +      +FF+  ++VPP +FRLPSK GD + E+ Q  LLS +L+ ++ +   N  ++  
Sbjct: 324  NEHVTSDVFFIQALIVPPTRFRLPSKLGDEIHENSQNELLSNILKTSLLIRDLNDQISSL 383

Query: 331  ------PDNAKVIVARWMN----LQQSVNVLFDG---KNAAGQRDMASGICQLLEKKEGL 377
                   D  K+I  R MN    +Q  VN   D    +NA   +    GI Q LEKKEGL
Sbjct: 384  QKGKLSIDERKIIFNRLMNSFVTVQNDVNAFIDSSKNQNAPAGKIPNPGIKQALEKKEGL 443

Query: 378  FRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIING 437
            FR+ +MGKRVNYA RSVISPDP L  NEIG+PP FA +LTYPE VT +N  +LR ++ING
Sbjct: 444  FRKHMMGKRVNYAARSVISPDPMLETNEIGVPPVFAKKLTYPEPVTSYNASELRQAVING 503

Query: 438  AEIHPGATHYLDKLSTMRLPPNKKMRIS-IGRKLDTSRGAIVQPGKDSDNE-FEGKMVYR 495
             +  PGA    ++  ++         IS IG  L+  +    Q    S+ E    K VYR
Sbjct: 504  PDKWPGAIQIQNEDGSL---------ISLIGMTLEQRKTLANQLLTPSNGETVINKKVYR 554

Query: 496  HLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQ 555
            H+++ DVV++NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFDGDEMN+HFPQ
Sbjct: 555  HIKNKDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQ 614

Query: 556  DEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSS 615
            +E ++AEA N+ N ++QY+ P++G PLR LIQDHI +   LT KD F  R+ + QL+Y  
Sbjct: 615  NENAKAEALNLANTDSQYLTPTSGSPLRGLIQDHISAGVWLTSKDAFFTRETYQQLIY-- 672

Query: 616  GVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPP 675
                   G    + G       +   ++ + P I+KP+PLWTGKQVIT +L +I     P
Sbjct: 673  -------GCIRPEDGH-----TTNSRIITVPPTIFKPQPLWTGKQVITTILLNIKPDNVP 720

Query: 676  FVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEK 735
             V                               L   NK+  +  G              
Sbjct: 721  GV------------------------------NLRSKNKIKNEYWG-------------- 736

Query: 736  EAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLS 792
                      E S E  +I+KN +L+ G++DK+Q+  + +G+VH++ E+YG   AG  LS
Sbjct: 737  ----------EGSTENEVIFKNGELLCGILDKSQYGASQFGIVHSLHEVYGPTVAGKALS 786

Query: 793  ALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID 852
             L RLFT ++ M  FTCG+DDL +  D  + R++ L  S +IG+    E   LE     +
Sbjct: 787  VLGRLFTNYIMMTAFTCGMDDLRLTSDGNKWRRDILKQSVDIGRATAAEVTNLEKDTANN 846

Query: 853  PIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLM 912
              +L   +E+ +R   D  +   D    S++N  T S V+++ +  G +K    N +  M
Sbjct: 847  DKELLRRLEEILR--DDNKLGILDAVTQSKVNTIT-SQVVSKCVPGGTMKRFPYNSMQAM 903

Query: 913  TTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLT 972
              SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++   RAGG+I  RF +
Sbjct: 904  ALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKGRFYS 963

Query: 973  GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQF 1032
            G+RPQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + +SYD SVRD DG+++QF
Sbjct: 964  GIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVRDGDGTLIQF 1023

Query: 1033 CYGEDGVDVHQTSFISKF-------DALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIY 1085
             YG D +D  + S +++F       DAL A+    G   N    + + ++     + M  
Sbjct: 1024 LYGGDAIDTTKQSHMNEFKFCMENYDALLAK-YNPGEFSNHLDTESALSYAKKVRKNMKK 1082

Query: 1086 KKCSGQLDASNAY-----IMELPDALKDNAEKFADK---FLSN---------------EM 1122
            +K     + +N Y     +      L   +E F DK   F+S                 +
Sbjct: 1083 QKKFPHYEQTNKYDPVLSVYNPSKYLGAVSETFQDKLDDFVSENPSLFSSKDKKSDSPSL 1142

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
            +++ F  L++ K++ S+  PGE VG++ASQS+GEPSTQMTLNTFH AG G  NVTLGIPR
Sbjct: 1143 SEKKFRALMQLKYMRSVINPGESVGIIASQSIGEPSTQMTLNTFHFAGHGAANVTLGIPR 1202

Query: 1183 LQEILTIASKDIKTPVITCPLL 1204
            ++EI+  AS  IKTP +T P+L
Sbjct: 1203 MREIIMTASAAIKTPQMTLPIL 1224


>gi|156839925|ref|XP_001643648.1| hypothetical protein Kpol_1040p3 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156114268|gb|EDO15790.1| hypothetical protein Kpol_1040p3 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1656

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/1282 (37%), Positives = 674/1282 (52%), Gaps = 183/1282 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L VP YNPL FN LY  L+  C FCHHF+    EV +   K
Sbjct: 62   CSTCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRLRSIEVHRYTCK 121

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDS----------------------------DVS 92
            L+L+  G  +  +S  LD  S                                    ++ 
Sbjct: 122  LKLLQYG--LIDESYQLDSISVGDMSSIIDDDDDEAAEDNDMDEKKSSKSISDSMIREIK 179

Query: 93   NKSS--CSMVTPRGNYDNVRNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNP 148
            NK      M   +   +    +K   +T++   E K  +  F K  +   KC NC   +P
Sbjct: 180  NKRKEFVDMAIAKALSEGKTTIKGT-FTAIVNDERKKLVHDFYKKLLSRPKCDNCGMYSP 238

Query: 149  RISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGT 208
            +  K  F  I    +    +  N ++G    +     E+ K L  S              
Sbjct: 239  KFRKDGFTKIFETALNDKQLTNNRVKGFIRHDMLKKQEQAKKLTGS-------------- 284

Query: 209  FPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDM 268
                 D      Q   G  PS   K    +   +L ++V++I+  +++ E E+   +   
Sbjct: 285  -----DETTEEEQFDVGRNPSARPKTGSTY---ILSTEVRNILRAVFKTEQEVLQCVFHA 336

Query: 269  QQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYV 328
            +     K      FF+ VVLVPP +FRLPSK GD V E+ Q  LLSK+L  ++ + +   
Sbjct: 337  RPNLSRKLVKADTFFMEVVLVPPTRFRLPSKLGDEVHENTQNQLLSKILTTSLLIRDLND 396

Query: 329  N----QPD-----NAKVIVARWMN----LQQSVNVLFDGKNAAGQ---RDMASGICQLLE 372
                 Q D     + +VI +R MN    +Q  VN   D   A G    +    G+ Q LE
Sbjct: 397  EMSKLQKDKVSLQDRRVIFSRLMNAFVTIQNDVNAFIDSTKAQGNTGGKVPIPGVKQALE 456

Query: 373  KKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRD 432
            KKEGLFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA +LTYPE VT +N+ +LR 
Sbjct: 457  KKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTSYNIAELRQ 516

Query: 433  SIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRG---AIVQPGKDSDNEFE 489
            ++ING +  PGA+   ++        +  +   IG  L+  +     ++ P  +      
Sbjct: 517  AVINGPDKWPGASQIQNE--------DGSLVSLIGMTLEQRKALANQLMTPSSNIATHTL 568

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
             K VYRH+++ D+V++NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFDGDEM
Sbjct: 569  NKKVYRHIKNRDIVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEM 628

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+HFPQ+E +RAEA+N+ N ++QY+ P++G P+R LIQDHI +   LT KD+F  R+++ 
Sbjct: 629  NMHFPQNENARAEAFNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQ 688

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
            Q +Y         G    + G     +RS+   +P  PA++KP PLWTGKQ+IT VL ++
Sbjct: 689  QYIY---------GCIRPEHGH---TTRSKIVTVP--PAVFKPVPLWTGKQIITTVLLNV 734

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
            T    P +                               L+ +NK+  +  G        
Sbjct: 735  TPSDMPGI------------------------------NLNSSNKIKNEYWG-------- 756

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNT 786
                      N S E +      +I+KN +L+ G++DK+Q+  + YG+VH++ E+YG + 
Sbjct: 757  ----------NGSTEND------VIFKNGELLCGILDKSQYGASKYGIVHSLHEVYGPDV 800

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE 846
            A  +LS L RLFT ++    FTCG+DDL +  +  + RK+ L  S + G++   E   LE
Sbjct: 801  AAKVLSVLGRLFTNYITATAFTCGMDDLRLTDEGNKWRKDILKTSVDTGRQAACEVTNLE 860

Query: 847  DGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
                 D  +L   +E+ +R    + +   D   +S++N  T S V+++ + +G +K    
Sbjct: 861  KETASDDSELLKRLEEILRDDNKSGI--LDAVTSSKVNSIT-SKVVSKCVPDGTMKKFPY 917

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
            N +  M  SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++    AGG+I
Sbjct: 918  NSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPTMVSGKTLPSFKPFETDAMAGGYI 977

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
              RF +G++PQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + ISYD SVRD D
Sbjct: 978  KGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNSVRDGD 1037

Query: 1027 GSIVQFCYGEDGVDVHQTSFISKF-------DALAAR------------ERGRGRGRNKF 1067
            G+++QF YG D VDV + S +++F       D+L  +            E      +   
Sbjct: 1038 GTLIQFLYGGDSVDVTKESHLTQFEFCLENYDSLLKKYNPSALIEHLDVETALKYSKKAS 1097

Query: 1068 CDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLS-----NEM 1122
              +  +  V    Q + Y     + + +  Y+  + +  +D  E F D   S       +
Sbjct: 1098 KSRKKNRKVPHYEQNIKYDPALAKFNPAK-YLGAVSEKFQDKLELFLDSNASLFESDKSV 1156

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
             ++ F  L++ K++ SL  PGE VG++ASQSVGEPSTQMTLNTFH AG G  NVTLGIPR
Sbjct: 1157 NEKKFRALMQLKYMRSLINPGESVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPR 1216

Query: 1183 LQEILTIASKDIKTPVITCPLL 1204
            ++EI+  AS  IKTP +T P+L
Sbjct: 1217 MREIIMTASAAIKTPQMTLPIL 1238


>gi|406608115|emb|CCH40549.1| DNA-directed RNA polymerase I subunit A1 [Wickerhamomyces ciferrii]
          Length = 1632

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1270 (38%), Positives = 683/1270 (53%), Gaps = 186/1270 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG     CPGH GHI+L +PVYNPL FN LY  L+  C +CH+F+    E  +   K
Sbjct: 62   CSTCGLDDKFCPGHQGHIELPIPVYNPLFFNQLYIFLRSACLYCHNFRLRTIETHRYACK 121

Query: 61   LELIIKGD---------IIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNV-- 109
            L+LI  G          I A  SLD D  +E  N  ++    ++   ++  R ++ N   
Sbjct: 122  LKLIQYGLLLELNELDNISAGISLDDDDEAEEENSNEAANP-QADRDLMAKREDFVNTAI 180

Query: 110  -------RNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISKPTFGWIHM 160
                   R  +    T+    E K  + +F K  +   KC NC   +P   K  F  +  
Sbjct: 181  AKALSEGRTSENGIITATVAEERKHLIHEFYKKILSRPKCANCSMFSPTFRKDGFTKLFE 240

Query: 161  NGMPHADIRANLIRGCNLGETFS--GGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAAR 218
            N +       N ++G    +     GG++        DVD+               T A+
Sbjct: 241  NPLKEKQELNNRVKGHARQDMLKTKGGDK-------MDVDS---------------TPAK 278

Query: 219  RHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAG 278
            R   GS  V               L S+V++I+  L++ E  +  ++   + +   +K  
Sbjct: 279  R-TTGSKYV---------------LSSEVRNIMRALFKKEHNIFHYLFHSRPRS-TEKVS 321

Query: 279  HSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN----AYVNQPDNA 334
              IFFL  V+VPP +FRLPSK G+ V E+ Q  LLSK+L  ++ + +        Q D  
Sbjct: 322  SDIFFLQAVVVPPTRFRLPSKLGEEVHENSQNELLSKILNTSLLIRDLNDQISTVQKDQI 381

Query: 335  -----KVIVARWMN----LQQSVNVLFDG---KNAAGQRDMASGICQLLEKKEGLFRQKL 382
                 K+   R MN    +Q  VN   D    +NA   R  A GI Q LEKKEGLFR+ +
Sbjct: 382  TVEERKITFNRLMNAFVTIQNDVNAFIDSTKNQNANAARTAAPGIKQALEKKEGLFRKHM 441

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
            MGKRVNYA RSVISPDP +  NEIG+PP FA++LTYPE VT  N  +LR ++ING +  P
Sbjct: 442  MGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTSHNAGELRQAVINGPDKWP 501

Query: 443  GATHYLDKLSTM--RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDG 500
            GAT   ++  ++   +      R ++  +L T  G        + +    K V+RH+++ 
Sbjct: 502  GATQIQNEDGSLVSLIGMTTDQRKALANQLLTPSG--------NASHVLNKKVFRHIKNN 553

Query: 501  DVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSR 560
            D+V++NRQPTLHK S+M H VRVL GEKTLR+HYAN + YNADFDGDEMN+HFPQ+E +R
Sbjct: 554  DIVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTNAYNADFDGDEMNMHFPQNENAR 613

Query: 561  AEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSS 620
            AEA N+ N ++QY+ P++G PLR LIQDHI +   +T KD+F  R+E+ Q +Y       
Sbjct: 614  AEALNLANTDSQYLTPTSGSPLRGLIQDHISAGVWITNKDSFFTREEYQQYVY------- 666

Query: 621  GLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVER 680
              G    + G     SR +   +P  PAI+KP PLWTGKQ+IT VL +IT    P +   
Sbjct: 667  --GCIRPEDGHS---SRPKLVTVP--PAIFKPVPLWTGKQIITTVLLNITPVSMPGI--- 716

Query: 681  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
                                        L   NK+  +  G+                  
Sbjct: 717  ---------------------------NLLSKNKIKNEYWGQ------------------ 731

Query: 741  KSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLF 798
             S+E E     +L     L+ G++DK+Q+  + YG+VH++ E+YG + AG  LS L RLF
Sbjct: 732  GSRENE-----VLFKDGALLCGILDKSQYGASQYGIVHSLHEVYGPSVAGKALSVLGRLF 786

Query: 799  TVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKS 858
            T ++Q   FTCG+DDL +  +  + R   L  S ++G+    E   L+   + D  +L  
Sbjct: 787  TNYIQSTAFTCGMDDLRLTAEGNQWRNEILLTSVDVGRLAAAEVTNLDKSTKHDDPELLK 846

Query: 859  EIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAK 918
             +E+  R    A +   D    S++N  T SSV+++++ EG +K    N +  M  SGAK
Sbjct: 847  RLEEVSRDDNKAGI--LDAVTQSKVNAIT-SSVVSKIIPEGTMKRFPYNSMQAMALSGAK 903

Query: 919  GSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQE 978
            GS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++   RAGG+I  RF +G+RPQE
Sbjct: 904  GSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDARAGGYIKGRFYSGIRPQE 963

Query: 979  YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDG 1038
            YYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + +SYD SVR+ DGS++QF YG D 
Sbjct: 964  YYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVRNGDGSLLQFLYGGDA 1023

Query: 1039 VDVHQTSFISKF-------DALAAR-------ERGRGRGRNKFCDKGSHTFVMGRNQEMI 1084
            VDV + S +++F       DAL  +       E       NK+  K      M +N+++ 
Sbjct: 1024 VDVTKESHMNQFKFCIDNYDALLTKYKPGELIEHLDTESANKYSKKVRKN--MKKNKDIP 1081

Query: 1085 YKKCSGQLDAS------NAYIMELPDALKDNAEKFADK----FLSNEMAKQDFLKLVKHK 1134
            +   S + D +      + Y+  + +  ++  + F ++    F  + +++  F  L++ K
Sbjct: 1082 HFAQSTKYDPTLSVYNPSKYLGSVSETFQNKLDSFIEENPKLFTKSGLSESKFRALMQLK 1141

Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
            ++ SL  PGE VG++A+QS+GEPSTQMTLNTFH AG G  NVTLGIPR++EI+  AS  I
Sbjct: 1142 YMRSLINPGESVGIIAAQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASAAI 1201

Query: 1195 KTPVITCPLL 1204
            KTP +T PLL
Sbjct: 1202 KTPQMTLPLL 1211


>gi|344302025|gb|EGW32330.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Spathaspora
            passalidarum NRRL Y-27907]
          Length = 1639

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1276 (38%), Positives = 678/1276 (53%), Gaps = 191/1276 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L VPVYNPL FN LY LL+  C +CH FK +  EV K   K
Sbjct: 62   CTTCGLDEKFCPGHMGHIELPVPVYNPLFFNQLYILLRASCLYCHKFKLNALEVHKYQCK 121

Query: 61   LELIIKGDIIAAKSLDLDLPS-----ESSNPEDSDVSNKSSCSMVTPRGNYDNV------ 109
            L LI  G ++    L+  L       E  + ++  +  K+   ++  R  + N       
Sbjct: 122  LRLIQYGLLLECVDLENMLAKGAQEIEDDDDDNDTLDQKTKQELMERRELFVNTAIAKAL 181

Query: 110  ---RNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISKPTFGWIHMNGMP 164
               R  +    T+    E K  +  F K  +   KC NC   +P   K  F  I  N + 
Sbjct: 182  SEGRTSERGVVTATVGEERKDTIHDFYKRLLSRPKCDNCGMYSPTFRKDGFTKIFENALT 241

Query: 165  HADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGS 224
               +  N ++G    +     +   +   SS  + P                  RH+ GS
Sbjct: 242  DKQVSNNRVKGLQRPDMIRNTKGNSN--TSSGDNLPNI----------------RHKGGS 283

Query: 225  GAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCS--FISDMQQQGFGKKAGHSIF 282
              V               L S++++II  ++ NE  +    F S   Q+   K     IF
Sbjct: 284  KYV---------------LSSEIRNIIRAVFTNEQPIIQKVFHSRPYQKEIVKG---DIF 325

Query: 283  FLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL-------ANAYVNQ--PDN 333
            F   +LVPP +FRLPSK GD + E+ Q  LLS +L+ ++ +       +N Y  +   + 
Sbjct: 326  FRQCILVPPTRFRLPSKLGDEIHENSQNELLSNILKTSLLIRDLNDQISNMYQEKLSGEQ 385

Query: 334  AKVIVARWMN----LQQSVNVLFDG---KNAAGQRDMASGICQLLEKKEGLFRQKLMGKR 386
             K+I  R MN    +Q  VN   D    +NA   +    GI Q LEKKEGLFR+ +MGKR
Sbjct: 386  KKIIFNRLMNAFVTIQNDVNAFIDSTKNQNAPAGKVPNPGIKQALEKKEGLFRKHMMGKR 445

Query: 387  VNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATH 446
            VNYA RSVISPDP L  NEIG+PP FA +LTYPE VT +N  +LR ++ING +  PGA  
Sbjct: 446  VNYAARSVISPDPNLETNEIGVPPVFAKKLTYPEPVTSYNASELRQAVINGPDKWPGAVQ 505

Query: 447  YLDKLSTM--RLPPNKKMRISIGRKLDT-SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVV 503
              ++  ++   +  + + R +I  +L T S GA V            K VYRH+++ DVV
Sbjct: 506  VQNEDGSLVSLIGMSLEQRKAIANQLLTPSNGASVV----------NKKVYRHIKNKDVV 555

Query: 504  LVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEA 563
            ++NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFDGDEMN+HFPQ+E ++AEA
Sbjct: 556  IMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQNENAKAEA 615

Query: 564  YNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLG 623
             N+ N +NQY+ P++G PLR LIQDHI +   LT KDTF  R+ + QL+Y         G
Sbjct: 616  LNLANTDNQYLTPTSGSPLRGLIQDHISAGVWLTSKDTFFTREIYQQLVY---------G 666

Query: 624  SFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGK 683
                + G       +   ++ + PA++KP+ LWTGKQVIT +L +I     P V      
Sbjct: 667  CIRPEDGH-----TTRNRIITVPPAVFKPQQLWTGKQVITTILLNIKPDGVPGV------ 715

Query: 684  LPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSK 743
                                     L   NK+  D  G                      
Sbjct: 716  ------------------------NLISKNKIKSDYWGAG-------------------- 731

Query: 744  EKELSEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTV 800
                S E  +I+KN +L+ G++DK+Q+  + YG+VH++ E+YG   AG  LS L RLFT 
Sbjct: 732  ----STENDVIFKNGELLCGILDKSQYGASQYGIVHSLHEVYGPTVAGKALSVLGRLFTN 787

Query: 801  FLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALEL-EDGAEIDPIKLKSE 859
            ++ M  FTCG+DDL +  +    RK  L  S +IG+    E   L +D +  DP +L   
Sbjct: 788  YIMMTAFTCGMDDLRLTNEGNEWRKEILKQSVDIGRVAAAEVTNLDQDTSNHDP-ELLRR 846

Query: 860  IEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKG 919
            +E+ +R   D  +   D    S++N  T S V+++ + +G +K    N +  M  SGAKG
Sbjct: 847  LEEILR--DDNKLGILDAITQSKVNTIT-SQVVSKCVPDGTMKRFPYNSMQAMALSGAKG 903

Query: 920  SKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEY 979
            S VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++   RAGG+I  RF +G+RPQEY
Sbjct: 904  SNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKGRFYSGIRPQEY 963

Query: 980  YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            YFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + +SYD SVRD DG+++QF YG D +
Sbjct: 964  YFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVRDGDGTLIQFLYGGDAI 1023

Query: 1040 DVHQTSFISKF-------DALAARERGRGRGRNKFCDKG-SHTFVMGRN----------- 1080
            D  + S +++F       DAL A+        N   ++  S++  + ++           
Sbjct: 1024 DTTKQSHMNQFKFCADNYDALLAKYNPGDMTDNLDVEEALSYSKKVRKSLKKQKELPHYE 1083

Query: 1081 QEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADK----FLSN--------EMAKQDFL 1128
            Q++ Y       + +  Y+  + +  +D  + F  +    F  N        ++ ++ F 
Sbjct: 1084 QQIKYDPVMNVYNPAK-YLGSVSEKFQDKLDAFVSENSQIFAKNKEEAKSTGKLTEKKFR 1142

Query: 1129 KLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILT 1188
             L++ K++ SL  PGE VG++ASQS+GEPSTQMTLNTFH AG G  NVTLGIPR++EI+ 
Sbjct: 1143 ALMQLKYMRSLINPGESVGIIASQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIM 1202

Query: 1189 IASKDIKTPVITCPLL 1204
             AS  IKTP +T P+L
Sbjct: 1203 TASAAIKTPQMTLPIL 1218


>gi|149247078|ref|XP_001527964.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Lodderomyces
            elongisporus NRRL YB-4239]
 gi|146447918|gb|EDK42306.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Lodderomyces
            elongisporus NRRL YB-4239]
          Length = 1668

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1289 (37%), Positives = 680/1289 (52%), Gaps = 203/1289 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHIDL VPVYNP+ FN LY  L+  C +CHHFK +  EV     K
Sbjct: 62   CATCGLDEKFCPGHMGHIDLPVPVYNPMFFNQLYIFLRSSCLYCHHFKMNWLEVNLFKCK 121

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNP---------------EDSDVSNKSSCSMVTPRGN 105
            L+LI  G ++    L+  LPS  S                 ED     K+   ++  R  
Sbjct: 122  LQLIQYGLLLECVELENILPSGKSTKGSIDEVEEAEEGEGEEDVTGDEKTRRELMEKREQ 181

Query: 106  Y------DNVRN--LKPQEWTSLQFAEAKLALLQ-FLK--IETTKCGNCKAKNPRISKPT 154
            +      D +R+    P+   +    E + A++  F K  +   KC NC   +P   K  
Sbjct: 182  FVKNAIADALRDGRTTPKGVITASVGEERKAVIHDFYKRLLARPKCSNCGMYSPSFRKDG 241

Query: 155  FGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDV--DAPETHSFNGTFPGT 212
            F  I  N +    +  N ++G           +  D+  SS V  +A +  S     P  
Sbjct: 242  FTKIFENALNDKQVSNNRVKGL----------QRLDMIRSSSVGKEAVKKASNASDIPNI 291

Query: 213  QDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCS--FISDMQQ 270
                  +H+ GS                 +L S+V++I+  ++E E  +    F S   Q
Sbjct: 292  ------KHKGGSKY---------------MLASEVRNIMRAVFEKEQAVLQKVFHSRPYQ 330

Query: 271  QGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL--ANAYV 328
                K     IFF   ++VPP +FRLPSK GD + E+ Q   LS +L+ +  +   N  +
Sbjct: 331  HELIKG---DIFFKQALVVPPTRFRLPSKLGDQIHENAQNESLSNILKTSALIRNLNGQI 387

Query: 329  NQ-------PDNAKVIVARWMN----LQQSVNVLFDG---KNAAGQRDMASGICQLLEKK 374
            +Q        +  K++  R MN    LQ  VN   D    +NA   +    GI Q LEKK
Sbjct: 388  SQMYKDKISGEQKKILFNRLMNSFVTLQNDVNAFIDATKNQNAPAGKVPNPGIKQDLEKK 447

Query: 375  EGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSI 434
            EGLFR+ +MGKRVNYA RSVISPDP L  NEIG+PP FA +LTYPE VT  N  +LR ++
Sbjct: 448  EGLFRKHMMGKRVNYAARSVISPDPNLETNEIGVPPVFAKKLTYPEPVTAHNAAELRQAV 507

Query: 435  INGAEIHPGATHY------LDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEF 488
            ING ++ PGA         L  L+ M +    + R ++  +L T  G         +   
Sbjct: 508  INGPDVWPGAVQIQNEDGKLINLTGMSV----EQRKALANQLLTPSG---------NAPI 554

Query: 489  EGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 548
             GK VYRH+++ DVV++NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFDGDE
Sbjct: 555  VGKKVYRHVKNKDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDE 614

Query: 549  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
            MN+HFPQ+E ++AEA N+ N ++QY+ P++G PLR LIQDHI +   LT KD+F +RD +
Sbjct: 615  MNMHFPQNENAKAEALNLANTDSQYLTPTSGAPLRGLIQDHISAGIWLTSKDSFFDRDTY 674

Query: 609  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
             QL+Y         G    + G       +   ++ + PA++KP+ LWTGKQVIT +L +
Sbjct: 675  HQLIY---------GCIRPEDGH-----TTRNRIITVPPAVFKPQFLWTGKQVITTILLN 720

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
            I     P V                                   N + K+K         
Sbjct: 721  IKPNNVPGV-----------------------------------NLISKNKV-------- 737

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNT 786
                      K++   K+ +E +++    +L+ G++DK+Q+  + YG+VH++ E+YG + 
Sbjct: 738  ----------KSEYWSKDSTENEVIFKNGELLCGILDKSQYGASQYGIVHSLHEVYGPDV 787

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE 846
            AG  LS L RLFT F  M+  TCG+DDL + ++    R + L  S +IG+    E   L 
Sbjct: 788  AGKALSVLGRLFTNFNTMYALTCGMDDLRLTEEGNAWRNDILKQSVDIGRVAATEVTNLL 847

Query: 847  DGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
                 +  +L+  +E+ +R   D+ +   D    S++N  T S V+++ + +G +K    
Sbjct: 848  QDTPNEDKELRRRLEEILR--DDSKLGILDAITQSKVNTIT-SQVVSKCVPDGTMKKFPY 904

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
            N +  M  SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF  ++   RAGG+I
Sbjct: 905  NAMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKSFETDARAGGYI 964

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
              RF +G+RPQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + ++YD SVRD D
Sbjct: 965  KQRFYSGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVNYDNSVRDGD 1024

Query: 1027 GSIVQFCYGEDGVDVHQTSFISKF-------DALAARERGRGRGRN-------KFCDKGS 1072
            G+++QF YG D +D  + S +++F       DAL A+        N        +  K  
Sbjct: 1025 GTMIQFLYGGDSIDTTKKSHMNQFNFCLENYDALLAKYNPGDMVDNLDTTEALSYSKKVR 1084

Query: 1073 HTFVMGRN-----QEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKF---------- 1117
             +    +N     Q + Y       + S  Y+  + +  ++N E F DK           
Sbjct: 1085 KSLKKQQNIPHYEQTIKYDPVLNVYNPSK-YLGSVSEKFQENLEAFVDKNPNLFAQSKEE 1143

Query: 1118 --LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMN 1175
               +N++ ++ F  L++ K++ SL  PGE VG++ASQS+GEPSTQMTLNTFH AG G  N
Sbjct: 1144 AKTTNKLTEKKFRALMQLKYMRSLVNPGESVGIIASQSIGEPSTQMTLNTFHFAGHGAAN 1203

Query: 1176 VTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            VTLGIPR++EI+  AS  IKTP +T P+L
Sbjct: 1204 VTLGIPRMREIIMTASASIKTPQMTLPIL 1232


>gi|302843962|ref|XP_002953522.1| hypothetical protein VOLCADRAFT_105949 [Volvox carteri f.
            nagariensis]
 gi|300261281|gb|EFJ45495.1| hypothetical protein VOLCADRAFT_105949 [Volvox carteri f.
            nagariensis]
          Length = 1891

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/1127 (40%), Positives = 615/1127 (54%), Gaps = 215/1127 (19%)

Query: 236  DLFSGPLLPSDVKDIIEKLWENEFELCSFI-SDMQQQGFGKKAG------------HSIF 282
            D+ +  + P +V++ +  LW+NE+ + S I S       GK+ G            + +F
Sbjct: 379  DVATKYMTPLEVEEHLRLLWQNEWPVLSLIYSAHVAPTPGKRVGSRLMTEAEARQAYRMF 438

Query: 283  FLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA-------------NAYVN 329
            FL V+ VPP KFR PSK G+ + EH   V LSK++ + + L              NA   
Sbjct: 439  FLRVIAVPPNKFRPPSKVGEELFEHAHNVSLSKIISSCLDLTSAPSATEATRQGTNATGA 498

Query: 330  QPDNAKVI-----VARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMG 384
             P+    +     VA W+ LQ  V  L D   A  +     GI Q LEKKEGLFR+ +MG
Sbjct: 499  NPEQVAALDLSRRVAIWLQLQDHVCTLMDLTTAESKGANVPGIRQSLEKKEGLFRKNMMG 558

Query: 385  KRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGA 444
            KRVN+A RSVISPDPY+   EIG+PPYFA RL++PERVTP NV +LR ++I GAE HPGA
Sbjct: 559  KRVNFAARSVISPDPYIGAGEIGVPPYFAKRLSFPERVTPLNVERLRAAVIVGAEAHPGA 618

Query: 445  THYLDKLSTMRLPPNKKM----RISIGRKLDTSRGAIVQPGKDSD--------------- 485
               ++++S+ R+     M    R ++ ++L ++   + +    S                
Sbjct: 619  VA-VEEVSSGRMISLGNMPLQRRQALAKQLLSNTAVLGRTAPLSTRLGGGAACGQAAVTY 677

Query: 486  ---NEFEGK-MVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYN 541
               +   G  +VYRHL DGD++L NRQPTLHKP +MAH  RVLKGE+T+RMHYANCST+N
Sbjct: 678  GGCSSLPGNYIVYRHLHDGDLMLTNRQPTLHKPGLMAHRARVLKGERTIRMHYANCSTFN 737

Query: 542  ADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDT 601
            ADFDGDE+N+H PQD++ R+E Y IV+A+ QY+ P++G P+R LIQDH+ S  L+TK+ T
Sbjct: 738  ADFDGDEINLHLPQDQLGRSEGYVIVHADQQYIVPTDGKPIRGLIQDHVGSGTLITKRGT 797

Query: 602  FLNRDEFCQLLYSSGV----------SSSGLGSFTGKPGQRVLISR----SEQEVLPLLP 647
            +   DE+ QL+Y +            + +     TG    +V ++     ++ ++ P  P
Sbjct: 798  WFTADEYRQLVYVACTPWNAKNAAAAAVAAAAEATGIARAKVTVTSLGRAADIKLEP--P 855

Query: 648  AIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKG 707
             + KP  LW+GKQVI+ V+++ TRG PP     GGK+P  ++                  
Sbjct: 856  CMLKPRRLWSGKQVISTVVSYFTRGLPPLTFSAGGKVPASYW------------------ 897

Query: 708  KLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKA 767
                                            N S E EL       ++  +VRGV+DK 
Sbjct: 898  -------------------------------GNTSMEHELE-----FFRGAMVRGVVDKN 921

Query: 768  QFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNH 827
             F  YGLVH VQELYG+ TAG +LSA SRLFT +LQ HGF+CG+DDLL++   E +R+  
Sbjct: 922  SFGKYGLVHAVQELYGNVTAGEILSAFSRLFTYYLQWHGFSCGMDDLLLVPKSEAKREAL 981

Query: 828  LHGSEEIG----------KRVHLEALELEDGAEIDP-----------IKLKSEIEKAMRG 866
            L  +E             K    +++EL +    DP           +K+ + + +  R 
Sbjct: 982  LASAEARAVQASSGLLRDKDKAQDSVELPEKILADPTSHARELLKYEMKVAAALGERYRA 1041

Query: 867  GGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQ 926
              D   A+ DMK +  ++   SS VI   L +G +K   KN +SLMT +GAKGS VNF Q
Sbjct: 1042 NRDTGKAH-DMKGSGAMHA-LSSEVIKVCLPDGQVKAFPKNCLSLMTITGAKGSLVNFSQ 1099

Query: 927  ISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAG 986
            IS  LGQQELEG+R PRM SGKTLP F P+D   R+ GFI DRFLTGLRPQEYYFHCMAG
Sbjct: 1100 ISCLLGQQELEGRRPPRMASGKTLPCFRPYDGGGRSNGFIGDRFLTGLRPQEYYFHCMAG 1159

Query: 987  REGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD-ADGSIVQFCYGEDGVDVHQTS 1045
            REGLVDTAVKTSRSGYLQRCLIKNLE L++ YD +VRD  D SIVQ  YGEDG+DV   S
Sbjct: 1160 REGLVDTAVKTSRSGYLQRCLIKNLESLRVHYDGTVRDNCDASIVQLAYGEDGLDVMNVS 1219

Query: 1046 FISKFDALA----------------------------ARERGRGRGRNKFCDKGSHTFVM 1077
            ++ +F  LA                            A+       R K  +K S     
Sbjct: 1220 YMLQFGFLARNAERFVQQVDQDTAMTASKVACLTEREAKVAAALEKRGKLLEKASQQEKE 1279

Query: 1078 GRNQEMI--YKKCSGQLDASNAYIMELPDALKDNAEKFADKFL----------------- 1118
            G+ +      K+ +  LD      +  P  +  ++E FAD                    
Sbjct: 1280 GQAEAAAESRKRAAALLDGMPISALHPPTVVGASSEAFADALQAFMRANAGSDLLAADVK 1339

Query: 1119 SNEMAKQD-------------------FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPST 1159
            S   +K+D                   F +L+  KF+ SLA  GE VG+LA+QS+GEPST
Sbjct: 1340 SATKSKRDKQHQAKAPNILPGRVDGATFSQLMMLKFMRSLAAAGEAVGVLAAQSIGEPST 1399

Query: 1160 QMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVG 1206
            QMTLNTFH+AGRGE NVTLGIPRL+EIL  A+K IKTPV+T P+  G
Sbjct: 1400 QMTLNTFHMAGRGEANVTLGIPRLREILMTAAKRIKTPVMTLPVRRG 1446



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 18/161 (11%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC      CPGHFGHI+L VPVYNP++F +LY L++  CF CH  K +++ VE    K
Sbjct: 66  CGTCQLGFDRCPGHFGHIELPVPVYNPMVFKVLYKLMRCTCFQCHRLKLAQQTVEVYKAK 125

Query: 61  LELIIKGDIIAAKSLDLDLPSE---------SSNPEDSDVSNKSSCSMVTPRGNYDNVRN 111
           L+ +  GD++ A  ++ DL S+         S++PE       S   +  P   +    +
Sbjct: 126 LQRLAVGDLVDAVEINTDLVSKSKELAEFMSSADPEKQQAKLASLKPVTKPAARHITQHS 185

Query: 112 LKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISK 152
           L+    T  +            K+ + +C NCK  NP + K
Sbjct: 186 LEAMRDTISEL---------LSKMNSKRCQNCKVHNPDVKK 217


>gi|150866448|ref|XP_001386054.2| alpha subunit of RNA polymerase I [Scheffersomyces stipitis CBS 6054]
 gi|149387704|gb|ABN68025.2| alpha subunit of RNA polymerase I [Scheffersomyces stipitis CBS 6054]
          Length = 1644

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1277 (38%), Positives = 682/1277 (53%), Gaps = 188/1277 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L VPVYNPL FN LY LL+  C +CHH K +  EV K    
Sbjct: 62   CTTCGLDEKFCPGHLGHIELPVPVYNPLFFNQLYILLRSTCLYCHHLKLNALEVHKYKCA 121

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSD------VSNKSSCSMVTPRGNYDNV----- 109
            L LI  G ++    L+       S+ ED D      + +K+   ++  R  + N      
Sbjct: 122  LRLIQYGLLLEVVELENMYARGQSHEEDDDEDSSSGLDHKAKQELMDRREEFVNTAIAKA 181

Query: 110  ----RNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISKPTFGWIHMNGM 163
                R  +    T+    E K  +  F K  +   KC NC   +P   K  F  I  N +
Sbjct: 182  LSEGRTSESGVITATVGEERKHTVHDFYKRLLSRPKCDNCGMYSPTFRKDGFTKIFENSL 241

Query: 164  PHADIRANLIRGCNLGETF-SGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQK 222
                I  N ++G N  +   +G     +  +SS  D P                  +H+ 
Sbjct: 242  TDKQITNNRVKGLNRPDMLRNGAATSTNSTSSSSSDMPNI----------------KHKG 285

Query: 223  GSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHS-I 281
            GS  V               L S++++I+  L+ NE ++   +     + + K+   + I
Sbjct: 286  GSKYV---------------LSSEIRNILRALFVNEQDVFQMV--FHSRPYQKETVVADI 328

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL--ANAYVNQP-------D 332
            FF   +LVPP +FRLPSK GD + E+ Q  LLS +L+  + +   N  ++         D
Sbjct: 329  FFRQALLVPPTRFRLPSKLGDEIHENAQNELLSNILKTALLIRDLNDQISSLVKGKISLD 388

Query: 333  NAKVIVARWMN----LQQSVNVLFDG---KNAAGQRDMASGICQLLEKKEGLFRQKLMGK 385
              K++  R MN    LQ  VN   D    +N+   +    GI Q LEKKEGLFR+ +MGK
Sbjct: 389  ERKIVFNRLMNSFVTLQNDVNAFIDSTKNQNSPAGKVPNPGIKQALEKKEGLFRKHMMGK 448

Query: 386  RVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGAT 445
            RVNYA RSVISPDP +  NEIG+PP FA +LTYPE VT  N  +LR ++ING +  PGA 
Sbjct: 449  RVNYAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTAHNAAELRRAVINGPDKWPGAI 508

Query: 446  HYLDKLSTM--RLPPNKKMRISIGRKLDT-SRGAIVQPGKDSDNEFEGKMVYRHLQDGDV 502
               ++  ++   +    + R +I  +L T S GA +            K VYRH+++ DV
Sbjct: 509  QVQNEDGSLISLIGMTLEQRKTIANQLLTPSNGATIL----------NKKVYRHIKNHDV 558

Query: 503  VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
            V++NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFDGDEMN+HFPQ+E ++AE
Sbjct: 559  VIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQNENAKAE 618

Query: 563  AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL 622
            A N+ N ++QY+ P++G PLR LIQDHI +   LT KD+F  R+ + QL+Y         
Sbjct: 619  ALNLANTDSQYITPTSGSPLRGLIQDHISAGVWLTSKDSFFTREIYQQLIY--------- 669

Query: 623  GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGG 682
            G    + G     +RS+   +P  PA++KP+PLWTGKQVIT++L +IT    P +     
Sbjct: 670  GCIRPEDGHS---TRSKLITVP--PAVFKPQPLWTGKQVITSILLNITPDNVPGI----- 719

Query: 683  KLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKS 742
                                      L   NK+  +  G                     
Sbjct: 720  -------------------------NLVSKNKVKNEYWG--------------------- 733

Query: 743  KEKELSEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFT 799
               E S E  +++KN +L+ G++DK+Q+    +G+VH++ E+YG+  AG  LS L RLFT
Sbjct: 734  ---EGSNENEVLFKNGELLCGILDKSQYGATQFGIVHSLHEVYGAAVAGKALSVLGRLFT 790

Query: 800  VFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGA--EIDPIKLK 857
             ++ M  FTCG+DDL + ++    R++ L  S +IG+    E   L+  +    DP +L 
Sbjct: 791  NYIMMTAFTCGMDDLRLTEEGNSWRRDILKQSVDIGRVAAAEVTNLDSKSTGNHDP-ELL 849

Query: 858  SEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGA 917
              +E+ +R   D  +   D    S++N  T S V+ + + +G +K    N +  M  SGA
Sbjct: 850  RRLEEILR--DDNKLGILDAVTQSKVNTIT-SQVVAKCVPDGTMKRFPYNSMQAMALSGA 906

Query: 918  KGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQ 977
            KGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++   RAGG+I  RF +G+RPQ
Sbjct: 907  KGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKGRFYSGIRPQ 966

Query: 978  EYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGED 1037
            EYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + +SYD SVRD DG+++QF YG D
Sbjct: 967  EYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVRDGDGTLIQFLYGGD 1026

Query: 1038 GVDVHQTSFISKF-------DALAARERGRGRGRNKFCDKGSHTFVMGR----------- 1079
             +D  + S +++F       DAL A+        +   +   H     R           
Sbjct: 1027 SIDTTKQSHMNQFKFCAENYDALLAKYNPGELTHHLDTETALHYSKKVRKNMKKQGKLPH 1086

Query: 1080 -NQEM-------IYKKCSGQLDASNAYIMELPDALKDNAEKFA----DKFLSNEMAKQDF 1127
              Q++       +Y         S  +  +L D +KDN + FA    +   + ++ ++ F
Sbjct: 1087 YEQQIKYDPVLSVYNPAKYLGSVSEKFQEKLDDFVKDNEDIFAKSKEEAKSTGKLTEKKF 1146

Query: 1128 LKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 1187
              L++ K++ SL  PGE VG++ASQS+GEPSTQMTLNTFH AG G  NVTLGIPR++EI+
Sbjct: 1147 RALMQLKYMRSLINPGEAVGIIASQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMREII 1206

Query: 1188 TIASKDIKTPVITCPLL 1204
              AS  IKTP +T P+L
Sbjct: 1207 MTASAAIKTPQMTLPIL 1223


>gi|366994298|ref|XP_003676913.1| hypothetical protein NCAS_0F00730 [Naumovozyma castellii CBS 4309]
 gi|342302781|emb|CCC70557.1| hypothetical protein NCAS_0F00730 [Naumovozyma castellii CBS 4309]
          Length = 1674

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/1288 (36%), Positives = 680/1288 (52%), Gaps = 184/1288 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L VP YNPL FN LY  L+  C FCHHF+    EV +   K
Sbjct: 62   CSTCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRTSCLFCHHFRLRSIEVHRFASK 121

Query: 61   LELIIKGDIIAAKSLD------LDLPSESSNPEDSDVSNKSSCSM-----VTPRGNYDNV 109
            L L+  G I  A  +D      L+   ES+  E  +    +S  +      + +   +  
Sbjct: 122  LRLLQFGLIDEAYQVDQITINDLEDFLESAEMEGDEALEDNSLPIESKSKSSGKSAKEIS 181

Query: 110  RNL------KPQEWTSLQFAEA--------------------KLALLQFLK--IETTKCG 141
             NL      K +E+  +  A+A                    K  L +F K  +  TKC 
Sbjct: 182  TNLLKELLQKREEFVDMAIAKAMSEGRTTEHGIFTATVNDERKALLHEFHKKLLLRTKCD 241

Query: 142  NCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDL--GASSDVDA 199
            NC   +P+  K  F  I    +    +  N ++G    +     ++ K L  G  S ++ 
Sbjct: 242  NCGMFSPKFRKDGFTKIFETALTEKQLTNNRVKGFIRQDMIKKQKQSKALNGGEKSAIEE 301

Query: 200  PETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEF 259
             E     G  P      A R + GS  +               L ++V++I+  ++  E 
Sbjct: 302  EEEEFDLGRNP------AARPKTGSTYI---------------LSTEVRNILRAVFNKEQ 340

Query: 260  ELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQA 319
             +  ++   +     K     +FF+ VV+VP  +FRLPSK GD V E+ Q  LLSK+L  
Sbjct: 341  NVLKYVFHSKPNMSNKAVSADMFFMDVVVVPATRFRLPSKLGDEVHENSQNQLLSKILTT 400

Query: 320  NIYLANAYVN---------QPDNAKVIVARWMN----LQQSVNVLFDGKNA---AGQRDM 363
            ++ + +               D+ ++I +R MN    +Q  VN   D   A   AG +  
Sbjct: 401  SLLIRDLNDEMSKLQKDKVSADDRRIIFSRLMNAFVTIQNDVNAFIDSTKAQGTAGGKLP 460

Query: 364  ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVT 423
              G+ Q LEKKEGLFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA +LTYPE VT
Sbjct: 461  IPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVT 520

Query: 424  PWNVVKLRDSIINGAEIHPGATHYLDKLSTM--RLPPNKKMRISIGRKLDTSRGAIVQPG 481
             +N+ +LR ++ING +  PGAT   ++  ++   +  + + R ++  +L T       P 
Sbjct: 521  SYNIAELRQAVINGPDKWPGATQIQNEDGSLVSLIGMSTEQRKALANQLMT-------PS 573

Query: 482  KDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYN 541
             +       K VYRH+++ D+V++NRQPTLHK S+M H VRVL GEKTLR+HYAN   YN
Sbjct: 574  SNITTHTLNKKVYRHIKNRDIVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYN 633

Query: 542  ADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDT 601
            ADFDGDEMN+HFPQ+E +RAEA N+ N ++QY+ P++G P+R LIQDHI +   LT KD+
Sbjct: 634  ADFDGDEMNMHFPQNENARAEASNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDS 693

Query: 602  FLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQV 661
            F  R+++ Q +Y         G    + G     +RS+   +P  P I KP PLWTGKQ+
Sbjct: 694  FFTREQYQQYIY---------GCIRPEDGH---ATRSKLITMP--PTIHKPVPLWTGKQI 739

Query: 662  ITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSG 721
            I+ VL +IT    P +                               L  +NK+  +  G
Sbjct: 740  ISTVLLNITPANMPGI------------------------------NLKSSNKIKNEYWG 769

Query: 722  KKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQ 779
               +                       E ++L    +L+ G++DK+Q+  + +G+VH++ 
Sbjct: 770  TGSQ-----------------------ENEVLFKNGELLCGILDKSQYGASKFGIVHSLH 806

Query: 780  ELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVH 839
            E+YG + A  +LS L RLFT ++    FTCG+DDL + ++  + R + L  S + G+   
Sbjct: 807  EVYGPSVAAKVLSVLGRLFTNYIMSTAFTCGMDDLRLTEEGNKWRSDILKTSVDTGREAA 866

Query: 840  LEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEG 899
             E   L+     +  +L   +++ +R    + +   D   +S++N  T S V+++ + +G
Sbjct: 867  AEVTNLDKDTPANDPELLKRLQEILRDNNKSGI--LDAVTSSKVNSIT-SKVVSKCVPDG 923

Query: 900  LLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWA 959
             +K    N +  M  SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++  
Sbjct: 924  TMKKFPYNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETD 983

Query: 960  PRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYD 1019
              AGG++  RF +G++PQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + ISYD
Sbjct: 984  AMAGGYVKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGIHISYD 1043

Query: 1020 YSVRDADGSIVQFCYGEDGVDV----HQTSF---ISKFDALAAR------------ERGR 1060
             SVRD DG+++QF YG D VDV    H T F   +  +DAL  +            E   
Sbjct: 1044 NSVRDTDGTLIQFLYGGDAVDVTKESHMTEFDFCLDNYDALLNKYNPSALIEHLDVESAL 1103

Query: 1061 GRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADK---- 1116
               +    ++  H       Q + Y     + + +  Y+  + +  +D  E + DK    
Sbjct: 1104 KYSKKSLKNRKKHIKEPHYKQNIKYDPVLSKFNPAK-YLGSVSEKFQDKLEGYLDKNSKL 1162

Query: 1117 FLSNE-MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMN 1175
            F S++ + ++ F  L++ K++ SL  PGE VG++ASQSVGEPSTQMTLNTFH AG G  N
Sbjct: 1163 FKSHDSVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAAN 1222

Query: 1176 VTLGIPRLQEILTIASKDIKTPVITCPL 1203
            VTLGIPR++EI+  AS  IKTP +T P+
Sbjct: 1223 VTLGIPRMREIIMTASAAIKTPQMTLPI 1250


>gi|254581290|ref|XP_002496630.1| ZYRO0D04532p [Zygosaccharomyces rouxii]
 gi|238939522|emb|CAR27697.1| ZYRO0D04532p [Zygosaccharomyces rouxii]
          Length = 1667

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/1286 (37%), Positives = 678/1286 (52%), Gaps = 187/1286 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  CPGH GHI+L VP YNPL F+ LY  L+  C +CH F+    EV +   K
Sbjct: 62   CATCGLDEKFCPGHQGHIELPVPCYNPLFFSQLYIYLRSSCLYCHRFRLRSIEVNRFACK 121

Query: 61   LELIIKGDIIAAKSLDL----DLPSESSNPEDSDVSNKSSCSMVTP-------------- 102
            L L+  G +  +  LD     DL   S + +D+D + + + +  TP              
Sbjct: 122  LRLLQYGLVEESYQLDQLRVGDLQGGSDDEDDNDEAVEDNNTSETPAKKSLKDASSAMLK 181

Query: 103  -----RGNYDNVRNLKPQE---------WTSLQFAEAKLALLQFLK--IETTKCGNCKAK 146
                 R  + +V   K            +T +   E K  +  F +  +   KC NC   
Sbjct: 182  ELLQKRKEFVDVAIAKAISEGKASHKGVFTIITNEERKKVIHDFHRRLLSRAKCDNCGMF 241

Query: 147  NPRISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDL-GASSDVDAPETHSF 205
            +P+  K  F  I    +    +  N ++G    +     ++   L G     D  E  S 
Sbjct: 242  SPKFRKDGFTKIFETALTDKQLTNNRVKGVIRQDMIKKQQQSAKLDGEEKANDVDEVFSL 301

Query: 206  NGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI 265
                               G  PS   K    +   +L ++V++I+  L++ E E+  ++
Sbjct: 302  -------------------GKNPSARPKTGSTY---ILSTEVRNIMRVLFKKEQEILQYV 339

Query: 266  SDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIY--- 322
               +     K     +FF+ VVLVPP +FRLPSK G+ V E+ Q  LLSKVL  ++    
Sbjct: 340  FHSRPNLLRKSVTPDVFFMEVVLVPPTRFRLPSKLGEEVHENTQNQLLSKVLTTSLLIRD 399

Query: 323  LANAYVN-QPD-----NAKVIVARWMN----LQQSVNVLFDGKNAAGQ---RDMASGICQ 369
            L +   N Q D     + +VI +R MN    +Q  VN   D   A G    +    G+ Q
Sbjct: 400  LNDEMSNLQKDKVSVEDRRVIFSRLMNAFVTIQNDVNSFIDSTKAQGSTGGKVPIPGVKQ 459

Query: 370  LLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVK 429
             LEKKEGLFR+ +MGKRVN+A RSVISPDP +  NEIG+PP FA +LTYPE VT +N+ +
Sbjct: 460  ALEKKEGLFRKHMMGKRVNHAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTSYNIAE 519

Query: 430  LRDSIINGAEIHPGATHY------LDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKD 483
            LR ++ING +  PGAT        L  L  M L    + R ++  +L T       P  +
Sbjct: 520  LRQAVINGPDKWPGATQIQNEDGSLVSLVGMTL----EQRNALANQLLT-------PSSN 568

Query: 484  SDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNAD 543
                   K V+RH+++ D+V++NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNAD
Sbjct: 569  PATHTLNKKVFRHIKNRDIVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNAD 628

Query: 544  FDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFL 603
            FDGDEMN+HFPQ+E +R+EA+N+ N ++QY+ P++G PLR LIQDHI +   LT KD+F 
Sbjct: 629  FDGDEMNMHFPQNENARSEAFNLANTDSQYLTPTSGSPLRGLIQDHISAGVWLTNKDSFF 688

Query: 604  NRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVIT 663
             RD++ Q +Y         G    + G       +  +++ + PA+ KP PLWTGKQ+IT
Sbjct: 689  TRDQYQQYIY---------GCIRPEDGH-----STRPKIVTVPPAVMKPVPLWTGKQIIT 734

Query: 664  AVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKK 723
             V+ ++T    P +                               L   NK+  +  G+ 
Sbjct: 735  TVIMNVTPADMPGI------------------------------NLLSKNKIKNEYWGQG 764

Query: 724  KEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQEL 781
                                    +E +++     L+ G++DK+Q+  + YG+VH++ E+
Sbjct: 765  S-----------------------TENEVIFKDGALLCGILDKSQYGASKYGIVHSLHEV 801

Query: 782  YGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLE 841
            YG  TA  +LS L RLFT F+    F+CG+DDL +  +  ++RK+ L  S ++G++   E
Sbjct: 802  YGPETAAKVLSVLGRLFTNFITNTAFSCGMDDLRLTAEGNKDRKDLLKTSTDVGRQAAAE 861

Query: 842  ALEL-EDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGL 900
               L  D    DP  LK  +E+ +R    + +   D   +S++N  T S V++ ++ +G 
Sbjct: 862  VTNLPTDTPSNDPELLK-RLEEILRDDNKSGI--LDAVTSSKVNSVT-SKVVSTVIPKGT 917

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
            +K   +N +  M  SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++   
Sbjct: 918  MKKFPQNSMQAMALSGAKGSTVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDS 977

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
             AGG+I  RF +G++PQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + +SYD 
Sbjct: 978  MAGGYIKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGIHVSYDN 1037

Query: 1021 SVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRN----------KFCDK 1070
            +VRD DG++VQF YG D VD  + S +++FD          R  N          +   K
Sbjct: 1038 TVRDGDGTLVQFLYGGDAVDTTKESHMTQFDFCLENYDALLRKYNPSALVEHLDVESALK 1097

Query: 1071 GSHTFVMGR---NQEMIYK---KCSGQLDASN--AYIMELPDALKDNAEKFADKF----- 1117
             S   +  R   ++E  YK   K    L   N   Y+  + +  +D  E F D       
Sbjct: 1098 YSKKALKSRKKIDKEPHYKNSDKYDPVLSKYNPAKYLGSVSEKFQDKLEGFLDSHSKQLK 1157

Query: 1118 LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVT 1177
            L + + ++ F  L++ K++ SL  PGE VG++A+QSVGEPSTQMTLNTFH AG G  NVT
Sbjct: 1158 LHSGINEKKFRALMQLKYMRSLVNPGEAVGIIAAQSVGEPSTQMTLNTFHFAGHGAANVT 1217

Query: 1178 LGIPRLQEILTIASKDIKTPVITCPL 1203
            LGIPR++EI+  AS  IKTP ++ P+
Sbjct: 1218 LGIPRMREIVMTASAAIKTPQMSLPV 1243


>gi|51090906|dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryza sativa Japonica
           Group]
          Length = 1748

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/857 (46%), Positives = 537/857 (62%), Gaps = 89/857 (10%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVR- 59
           CK+CGQ+   CPGHFGHI+L  P++NPLLF  L  LL+  CF CH F+ ++ +  +  R 
Sbjct: 65  CKSCGQQSIRCPGHFGHIELAKPLFNPLLFMSLKNLLQVTCFHCHKFRLNKEQHSRFCRI 124

Query: 60  -------KLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNL 112
                  +LEL+++GDI  AK+L+ DL  +  + ED +    S     + R   +N    
Sbjct: 125 TKIFDFLELELLVRGDIAHAKNLE-DLGGKVLSKEDDETEATSGDK--SARSEREN---- 177

Query: 113 KPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANL 172
             + WTS+Q  EA     + +K    KC +C+ KNP I  P +GW+ +     + +RAN 
Sbjct: 178 --KTWTSIQLKEALSIFSKLMKKRQKKCAHCEKKNPIIKNPIYGWL-IKDTTSSSVRANA 234

Query: 173 IRGCNL-GETFSGGEEEKDL-GASSDVDAPET---HSFNGTFPGTQDTAARRHQKGSGAV 227
           I    L G+       E  + G   ++ +P T    S N T   + DT           V
Sbjct: 235 IANAKLSGDGHVNDSRETGVSGLDEELTSPGTLSRRSTNETRRISDDTIKE-------MV 287

Query: 228 PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFG---KKAGHSIFFL 284
            S  KK        LL ++V+ I++ LW+ E   C  + D QQ       K+ G+ +FFL
Sbjct: 288 ASSGKKH-------LLTTEVESILKDLWKKEARFCMLLCDFQQNTLSVSEKRRGYEMFFL 340

Query: 285 GVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNL 344
             +LV P +FR        +MEHPQ VLLSKV ++N+ L  +      N   ++ RWM+L
Sbjct: 341 KNLLVAPNRFRPSISSSLGIMEHPQNVLLSKVQESNLALQQSIA--ASNHMEVLRRWMDL 398

Query: 345 QQSVNVLFDG-KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
           Q++VNVL+D  K  +     A+GI QLLEKKEG+ RQK+MGKRVNYACRSVISPDPYLAV
Sbjct: 399 QRNVNVLYDSSKGLSKNEKNANGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAV 458

Query: 404 NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMR 463
           NEIGIPP FA RLTYPE+VTPWN  KL+++I NGA+IHPGATHY D  +  +L      R
Sbjct: 459 NEIGIPPVFATRLTYPEKVTPWNARKLQEAINNGADIHPGATHYRDNNNMYKLQAAPPKR 518

Query: 464 ISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRV 523
            +I + L  SRG+I QPGKD   EFE K+VYRHLQDGDVVLVNRQPTLHKPS+MAHVVRV
Sbjct: 519 RAIAKMLPASRGSISQPGKDPKCEFESKVVYRHLQDGDVVLVNRQPTLHKPSMMAHVVRV 578

Query: 524 LKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLR 583
           L GEKT+RMHYANCSTYNADFDGDEMNVHFPQDE+SRAEA NIV+AN QY+ P +GD +R
Sbjct: 579 LPGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAINIVDANKQYIGPRSGDAVR 638

Query: 584 SLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVL 643
            LIQDHI+ A LLTK DTFL+R+E+ QL+Y S +SS+     +G+ G+++ I   +  + 
Sbjct: 639 GLIQDHIIGAVLLTKLDTFLSREEYNQLVYGSVLSST---RRSGQFGKKISIIMDDDALE 695

Query: 644 PLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKK 703
           P+ PAIWKP+PLWTGKQVIT +LNH+T+GRPPF VE+ G++ +++               
Sbjct: 696 PVPPAIWKPKPLWTGKQVITTILNHVTKGRPPFTVEKKGRIEKEYL-------------- 741

Query: 704 NDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGV 763
                      + ++++G K + +                    SE+ L ++ N+L++G+
Sbjct: 742 -----------IPEERNGDKVKTINP------------------SEQVLYVHDNELIKGM 772

Query: 764 IDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERE 823
           IDKAQF +YG+VHTV ELYG  TAG LLS+ SRLFT+ LQ+HGFTCGVDDLL+ ++ +  
Sbjct: 773 IDKAQFGNYGIVHTVHELYGPETAGVLLSSFSRLFTMVLQLHGFTCGVDDLLLSQESDMT 832

Query: 824 RKNHLHGSEEIGKRVHL 840
           R+  L  SE+  K VH+
Sbjct: 833 REEILGKSEKHSKIVHI 849



 Score =  401 bits (1030), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/397 (55%), Positives = 263/397 (66%), Gaps = 27/397 (6%)

Query: 818  KDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDM 877
            +D E E   H     E     H +     +G + D +KL+ E+EK +R  G++A    D 
Sbjct: 893  EDHEAEDSTHPKEDHEAEDSTHPKEDHEAEGDDEDQMKLQMEVEKIIRRNGESATVILDR 952

Query: 878  KMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELE 937
             M+S+LN  TS  V  ++   GL KP   N +SLMT +GAKG  VN  QISS LGQQELE
Sbjct: 953  NMSSELNTLTSK-VNKKVFPYGLRKPFPGNCLSLMTQTGAKGGLVNMTQISSLLGQQELE 1011

Query: 938  GKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKT 997
            GKRVPRM+SGKTLP F PWD + RAGGFI DRFLTGLRPQEYYFHCMAGREGLVDTAVKT
Sbjct: 1012 GKRVPRMISGKTLPCFPPWDTSSRAGGFIGDRFLTGLRPQEYYFHCMAGREGLVDTAVKT 1071

Query: 998  SRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFI-SKFDALAAR 1056
            SRSGYLQRCLIK+LE LK+SYD++VRD DGSI+QFCYGEDGVDV +TSF+  KF  L+  
Sbjct: 1072 SRSGYLQRCLIKSLESLKVSYDHTVRDVDGSIIQFCYGEDGVDVLKTSFLDDKFRELSDN 1131

Query: 1057 ERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADK 1116
             R      +   DK  H  +                   N YI ELP+ L +NA +F  K
Sbjct: 1132 RRALLGKLDSHNDK--HLLL-----------------NPNGYISELPEKLIENAMEFL-K 1171

Query: 1117 FLSNEMAKQD-----FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGR 1171
               NE  + D      +KL+K K++ SL  PGE VG++A+QS+GEPSTQMTLNTFHLAGR
Sbjct: 1172 SKRNEKGRYDIKEKELMKLLKVKYISSLVDPGEAVGVVAAQSIGEPSTQMTLNTFHLAGR 1231

Query: 1172 GEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKT 1208
            GEMNVTLGIPRL+E+L  AS  I TP + CPLL  KT
Sbjct: 1232 GEMNVTLGIPRLKELLMTASAKISTPFMKCPLLEDKT 1268


>gi|448106653|ref|XP_004200803.1| Piso0_003410 [Millerozyma farinosa CBS 7064]
 gi|448109741|ref|XP_004201434.1| Piso0_003410 [Millerozyma farinosa CBS 7064]
 gi|359382225|emb|CCE81062.1| Piso0_003410 [Millerozyma farinosa CBS 7064]
 gi|359382990|emb|CCE80297.1| Piso0_003410 [Millerozyma farinosa CBS 7064]
          Length = 1639

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/1276 (36%), Positives = 672/1276 (52%), Gaps = 190/1276 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C+TCG  +  CPGH GHI+L VP YNP+ FN  Y  L+  C +CHHF+ +  EV +   K
Sbjct: 62   CRTCGLDEKFCPGHQGHIELPVPAYNPMFFNQFYVFLRSCCLYCHHFRLNSVEVHRYECK 121

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYD------------- 107
            L LI  G ++    +D     +SS+  D +          +P+   D             
Sbjct: 122  LRLIQYGLLLECVEMDNMFTKKSSSHGDGEEDEDDGNDSASPQAKKDLMERREHFVNMAI 181

Query: 108  --NVRNLKPQEW---TSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISKPTFGWIHM 160
               +   +  E+   T+    E K  + +F K  +   KC NC   +P   K  +  I  
Sbjct: 182  AKAISEGRSSEYGVVTASIMEERKATIYEFYKKLLSRPKCDNCGMFSPAFRKDGYSKIFE 241

Query: 161  NGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRH 220
            N +    I  N ++G +  +    GE+              + + N   P        +H
Sbjct: 242  NALKEKQITNNRVKGLSRPDMLRKGEK-------------SSKNNNENIPNI------KH 282

Query: 221  QKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCS--FISDMQQQGFGKKAG 278
            + GS  V               + S+V++I++ ++E E  +    F S   Q+   +   
Sbjct: 283  KSGSKYV---------------ISSEVRNILKSVFEVEQRIIQKLFHSRPYQK---ETVS 324

Query: 279  HSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA--NAYVNQ------ 330
              IFF+  ++VP  +FRLPSK G+ + E+ Q  LLS +L+ ++ +   N  ++       
Sbjct: 325  ADIFFIQTLVVPATRFRLPSKVGEEIHENSQNELLSNILKTSLLIKDLNDQISNVEKGKL 384

Query: 331  -PDNAKVIVARWMN----LQQSVNVLFDGK---NAAGQRDMASGICQLLEKKEGLFRQKL 382
              D  K+I  R MN    LQ  VN   D     NA   +    G+ Q LEKKEGLFR+ +
Sbjct: 385  SVDERKIIFNRLMNGFVTLQNDVNAFIDSTKNPNAPAGKAPNPGVKQALEKKEGLFRKHM 444

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
            MGKRVNYA RSVISPDP L  NEIG+PP FA +LTYPE VT +NV +LR ++ING +  P
Sbjct: 445  MGKRVNYAARSVISPDPMLETNEIGLPPVFAKKLTYPEPVTSYNVSELRKAVINGPDKWP 504

Query: 443  GATHYLDKLSTMRLPPNKKMRIS-IGRKLDTSRGAIVQPGKDSDNE-FEGKMVYRHLQDG 500
            GA    ++  ++         +S IG  L+  +    Q    ++ E    K V+RH+++ 
Sbjct: 505  GAVQIQNEDGSL---------VSLIGMTLEQRKTLANQLLTPTNGESVINKKVFRHIKNK 555

Query: 501  DVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSR 560
            DVVL+NRQP+LHK S+M H VRVL GEKTLR+HYAN   YNADFDGDEMN+HFPQ+E ++
Sbjct: 556  DVVLMNRQPSLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNLHFPQNENAK 615

Query: 561  AEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSS 620
            AEA N+ N ++QY+ P++G PLR LIQDHI +   LT KDTF  R+E+ QL+Y       
Sbjct: 616  AEALNLANTDSQYLTPTSGSPLRGLIQDHISAGLWLTNKDTFFTREEYQQLIY------- 668

Query: 621  GLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVER 680
              G    + G     S ++ + +P  P I+KP PLWTGKQVI+ +L +I     P V   
Sbjct: 669  --GCIRPEDGH---TSSAKIQTMP--PTIFKPVPLWTGKQVISTILLNIKPRNVPGV--- 718

Query: 681  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
                                        L   NK+  +  GK                  
Sbjct: 719  ---------------------------NLISKNKVKNEYWGK------------------ 733

Query: 741  KSKEKELSEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRL 797
                   S E  +I++N +L+ G++DK+Q+  + +G++H++ E+YG + AG  LS L RL
Sbjct: 734  ------YSSENEVIFRNGELLCGILDKSQYGASKFGIIHSLHEVYGPDIAGKALSVLGRL 787

Query: 798  FTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLK 857
            FT ++    FTCG+DDL +  + +  R++ L  S +IG+    E   L+     +  +  
Sbjct: 788  FTNYIMKTAFTCGMDDLRLTSEGDSWRRDILKESRDIGRVAATEVTNLDKSTPNNDGEFL 847

Query: 858  SEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGA 917
              +E+ +R   D  +A  D    S++N  T S V+++++  G +K   +N +  M  SGA
Sbjct: 848  KRLEEILR--DDNKLAILDAVTQSKVNTIT-SKVVSKVIPSGTMKKFPQNSMQAMALSGA 904

Query: 918  KGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQ 977
            KGS VN  QI   LGQQ LEG+RVP M SGKTLPSF P++   RAGG+I  RF +G+RPQ
Sbjct: 905  KGSNVNVSQIMCLLGQQALEGRRVPVMTSGKTLPSFKPYETDARAGGYIKGRFYSGIRPQ 964

Query: 978  EYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGED 1037
            EYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + + YD +VRDADG++VQF YG D
Sbjct: 965  EYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVGYDNTVRDADGTLVQFLYGGD 1024

Query: 1038 GVDVHQTSFISKF-------DALAAR------------ERGRGRGRNKFCDKGSHTFVMG 1078
             VD  + S + +F       DAL ++            E      +    +      +  
Sbjct: 1025 AVDTTKQSHMDEFKFCVENYDALLSKYNPGEQSYHLDTELALSYAKKVRKNMKKQKDLPH 1084

Query: 1079 RNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKF----------LSNEMAKQDFL 1128
              QE+ Y       + S  Y+  + +  +D  + F  +           + + + ++ F 
Sbjct: 1085 YEQEIKYDPVLSVYNPSK-YLGSVSEKFQDKLDAFVKEHEHLFASKHNKIDSTLTEKKFR 1143

Query: 1129 KLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILT 1188
             L++ K++ SL  PGE VG++ASQS+GEPSTQMTLNTFH AG G  NVTLGIPR++EI+ 
Sbjct: 1144 ALMQLKYMRSLVNPGEAVGIIASQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIM 1203

Query: 1189 IASKDIKTPVITCPLL 1204
             AS  IKTP +T P+L
Sbjct: 1204 TASAAIKTPQMTLPIL 1219


>gi|159477511|ref|XP_001696852.1| DNA-directed RNA polymerase I subunit A [Chlamydomonas reinhardtii]
 gi|158274764|gb|EDP00544.1| DNA-directed RNA polymerase I subunit A [Chlamydomonas reinhardtii]
          Length = 1515

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/1035 (43%), Positives = 590/1035 (57%), Gaps = 154/1035 (14%)

Query: 236  DLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQ------QQGFG---------KKAGHS 280
            D+ +  + P++V++ +  LW +E+ + S I   Q      Q+G            +A + 
Sbjct: 408  DVATKYMTPTEVEEHLRLLWSHEWPILSLIYSAQVSAKPGQRGGAGGRLLNEAEARAAYK 467

Query: 281  IFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN-------AYVNQ--- 330
            +FFL  + V P KFR PSK GD + EH   V+L+K++ +++ L++       A   Q   
Sbjct: 468  MFFLRCLPVAPNKFRPPSKVGDELYEHAHNVILAKIINSSLELSSGPRAVDAAARTQGGT 527

Query: 331  ---PDNAKVI-----VARWMNLQQSVNVLFDGKNAAG-QRDMASGICQLLEKKEGLFRQK 381
               P  A  +     VA W+ LQ  V  L D   A    +  A GI Q LEKKEGLFR+ 
Sbjct: 528  GADPAQAAAMDLSRRVATWLALQNHVCALMDSTTAEDLDKSGAQGIRQQLEKKEGLFRKN 587

Query: 382  LMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIH 441
            +MGKRVN+A RSVISPDPY+   EIG+PPYFA RL++PERVTP+NV +LR ++I GA  H
Sbjct: 588  MMGKRVNFAARSVISPDPYIGAGEIGVPPYFAKRLSFPERVTPFNVERLRAAVIAGAHQH 647

Query: 442  PGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGD 501
            PGA    D ++T R+       I +G      R A+             K +     DGD
Sbjct: 648  PGAVAVED-VTTGRM-------IQLGNLPLERRQAVA------------KQLMSSTADGD 687

Query: 502  VVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRA 561
            ++L NRQPTLHKP +MAH  RVLKGE+T+RMHYANCST+NADFDGDE+N+H PQD++ R+
Sbjct: 688  LMLTNRQPTLHKPGLMAHRARVLKGERTIRMHYANCSTFNADFDGDEINLHLPQDQLGRS 747

Query: 562  EAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSG 621
            E Y IV+A+ QY+ P++G P+R LIQDH+V+A L+TK+ T+   DE+ QL+Y   ++ + 
Sbjct: 748  EGYVIVHADQQYIVPTDGKPIRGLIQDHVVAATLITKRGTYFTADEYRQLVY---IACTP 804

Query: 622  LGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERG 681
              +   +P   V  + S  ++    P   KP  LW+GKQV++ V++  TRG PP     G
Sbjct: 805  WATGKARPKVTVTAAGSSFDIDLEPPCTLKPRQLWSGKQVVSTVISFFTRGLPPLSFSAG 864

Query: 682  GKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNK 741
            GK+P  ++                 G  S  ++M                          
Sbjct: 865  GKVPASYW-----------------GAGSGEDEMQ------------------------- 882

Query: 742  SKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVF 801
                         ++  LVRGV+DK  F  YGLVH VQELYG+ TAG LLSA SRLFT +
Sbjct: 883  ------------FHRGALVRGVVDKNAFGKYGLVHAVQELYGNTTAGKLLSAFSRLFTYY 930

Query: 802  LQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED--GAE--------- 850
            LQ HGFTCG+DDLL++   E  R   L  +E    +   E L  +D  GA+         
Sbjct: 931  LQWHGFTCGMDDLLLVPGSEARRAALLATAEARAVQASSELLVDKDKKGAKGSAGEGLPA 990

Query: 851  ---IDP-----------IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELL 896
                DP           IK+ +E+ +  R   D   A+ DMK +  ++   SS VI   L
Sbjct: 991  ELLADPASHARQLLHYEIKVSAELGERYRTNRDTGKAH-DMKGSGAMHA-LSSEVIKVCL 1048

Query: 897  SEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPW 956
              G  K   +N +SLMT +GAKGS VNF QIS  LGQQELEG+R PRM SGKTLP F P+
Sbjct: 1049 PGGQAKAFPQNCLSLMTITGAKGSLVNFSQISCLLGQQELEGRRPPRMASGKTLPCFRPY 1108

Query: 957  DWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKI 1016
            D   R+ GFI DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE L++
Sbjct: 1109 DGGGRSNGFIGDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLRV 1168

Query: 1017 SYDYSVRD-ADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTF 1075
             YD +VRD  D SIVQF YGEDG+DV   S++ +F  LA         RN   D+ S   
Sbjct: 1169 HYDGTVRDNCDASIVQFAYGEDGLDVMSVSYMRQFGFLA---------RN--ADRFSQLA 1217

Query: 1076 VMGRNQEMIYKKCSGQLDASNA-YIMELPDALKDNAEKFADKFLSNEMAKQD---FLKLV 1131
                 +  +     G L A +A    +     K + E  A           D   F +L+
Sbjct: 1218 FADALRAYVAANPDGALQAQDAGAKKDGKKDRKKDKELVAAGGRHGGKGSVDGPLFGQLM 1277

Query: 1132 KHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIAS 1191
              K++ SLA  GE VG+LA+QSVGEPSTQMTLNTFH+AGRGE NVTLGIPRL+EIL  A+
Sbjct: 1278 MLKYMRSLAAAGEAVGVLAAQSVGEPSTQMTLNTFHMAGRGEANVTLGIPRLREILMTAA 1337

Query: 1192 KDIKTPVITCPLLVG 1206
              IKTPV+T PL+ G
Sbjct: 1338 PRIKTPVMTLPLVAG 1352



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 22/170 (12%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC      CPGHFG I+L VPVYNPL+F ++Y LL+  C  CH FK S+  V+  +RK
Sbjct: 78  CGTCLLSHDRCPGHFGRIELPVPVYNPLVFKVMYKLLRCTCLHCHRFKLSQDTVDTYLRK 137

Query: 61  LELIIKGDIIAA---------KSLDLDLPSESSNPEDS----DVSNKSSCS-----MVTP 102
           L  ++ GD++ A         KS +L       + +D+    D S+K++           
Sbjct: 138 LTRLVDGDLVKAVEISTERHVKSKELAELMAGGDSDDTEPKPDSSSKAAAGGKPGQAGAG 197

Query: 103 RGNYDNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISK 152
              +   RN+      ++Q   ++L      K+ + KC NCK  NP+I K
Sbjct: 198 GKGHAARRNITQHTLEAMQDTISEL----LGKMNSNKCQNCKVTNPQIKK 243


>gi|302307745|ref|NP_984470.2| ADR374Cp [Ashbya gossypii ATCC 10895]
 gi|299789146|gb|AAS52294.2| ADR374Cp [Ashbya gossypii ATCC 10895]
 gi|374107684|gb|AEY96592.1| FADR374Cp [Ashbya gossypii FDAG1]
          Length = 1640

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/1269 (36%), Positives = 672/1269 (52%), Gaps = 172/1269 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  +  C GH GHI+L VP Y+PL FN LY  L+  C +CHHF+    EV +   K
Sbjct: 62   CATCGLDEKFCSGHQGHIELPVPCYSPLFFNQLYIYLRSSCLYCHHFRLKAVEVHRYACK 121

Query: 61   LELIIKGDIIAAKSLDLDL-----PSESSNPE--DSDVSNKSSCSMVTPRGNYDNV---- 109
            L+L+  G I  A  LD DL      S+ +  E  ++DVS      +   R  Y +     
Sbjct: 122  LKLLQYGLIDEAYKLD-DLTVGGVASDEAEEEGKENDVSAALVAELKMRRREYVDTEIAK 180

Query: 110  -----RNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISKPTFGWIHMNG 162
                 R  K   +T+    E K  + +F K  +   KC NC   +P+  K  F  I    
Sbjct: 181  ALSDGRTSKYGTFTATVNDERKNLIHEFHKKILARPKCDNCGMFSPKFRKDGFTKIFETA 240

Query: 163  MPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQK 222
            +    +  N ++G    +     ++ K L   +  D P++       P T  T       
Sbjct: 241  LTEKQLTNNRVKGLIREDMIRKQQQSKRLAGETVDDEPQSGRSANLKPKTGSTY------ 294

Query: 223  GSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIF 282
                               +L ++V++I+  +++NE  +  ++ + +           +F
Sbjct: 295  -------------------ILSTEVRNILRAVFKNEQVVLQYVFNSRPNLKKTLVKADMF 335

Query: 283  FLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQP----------- 331
            F+ V++VPP +FRLPSK GD V E+ Q  LLSK+L  ++ + +  +N+            
Sbjct: 336  FMEVIVVPPTRFRLPSKLGDEVHENTQNQLLSKILTTSLLIRD--LNEEMSKLQKDKVSL 393

Query: 332  DNAKVIVARWMN----LQQSVNVLFDGKNAAGQ---RDMASGICQLLEKKEGLFRQKLMG 384
            ++ K+I  R MN    +Q  VN   D   A G    +    G+ Q LEKKEGLFR+ +MG
Sbjct: 394  EDRKIIFNRLMNAFVTIQNDVNAFIDSTKAQGSTGGKVPIPGVKQALEKKEGLFRKHMMG 453

Query: 385  KRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGA 444
            KRVNYA RSVISPDP +  NEIG+PP FA +LTYPE VT +N+ ++R ++ING +  PGA
Sbjct: 454  KRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTAYNIAEMRQAVINGPDKWPGA 513

Query: 445  THYLDKLSTM--RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDV 502
            T   ++  ++   +      R ++  +L T       P          K VYRH+++ D+
Sbjct: 514  TQIQNEDGSLVSLVGMTSDQRKALANQLMT-------PSTHGSTHTLNKKVYRHIKNRDI 566

Query: 503  VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
            V++NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFDGDEMN+HFPQ+E +R+E
Sbjct: 567  VIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARSE 626

Query: 563  AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL 622
            A+ + N ++QY+ P++G P+R LIQDHI +   LT KD+F  R+++ Q +Y         
Sbjct: 627  AFTLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTNKDSFFTREQYQQYIY--------- 677

Query: 623  GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGG 682
            G    + G       S  +++ + PA+ KP PLWTGKQ+IT VL + T    P +     
Sbjct: 678  GCIRPEDGH-----ASRSKIITVPPAVVKPVPLWTGKQIITTVLLNATPADIPGI----- 727

Query: 683  KLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKS 742
                                      L   NK+  +  GK                    
Sbjct: 728  -------------------------NLVSKNKIKNEYWGKS------------------- 743

Query: 743  KEKELSEEKLLIYKND-LVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFT 799
                 S E  +I+KN  L+ G++DK+Q+  + YG+VH++ ELYG + +  +LS L RLFT
Sbjct: 744  -----SYENEVIFKNGALLCGILDKSQYGASKYGIVHSLHELYGPDVSSKVLSILGRLFT 798

Query: 800  VFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSE 859
             ++    FTCG+DDL +  +  + R + L  S +IG+    E   L      D  +L   
Sbjct: 799  NYITSTAFTCGMDDLRLTDEGNKWRIDILKKSTDIGRAAAAEVTNLGGDVRPDDAELLKR 858

Query: 860  IEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKG 919
            +E+ +R   D  +   D   +S++N  T S V+++ + +G +K    N +  M  SGAKG
Sbjct: 859  LEEILR--DDNKLGILDAVTSSKVNTIT-SEVVSKCVPDGTMKKFPYNSMQAMALSGAKG 915

Query: 920  SKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEY 979
            S VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++   +AGG+I  RF +G++PQEY
Sbjct: 916  SNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDAKAGGYIKGRFYSGIKPQEY 975

Query: 980  YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            YFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + +SYD +VRD DG++VQF YG D +
Sbjct: 976  YFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNTVRDGDGTLVQFLYGGDAI 1035

Query: 1040 DVHQTSFISKF-------DALAAR------------ERGRGRGRNKFCDKGSHTFVMGRN 1080
            DV + S +S+F       DAL  R            E      +    ++  +  +    
Sbjct: 1036 DVTKESHMSEFKFCVDNYDALLKRYNPSALIQHLDVESALKYSKKAMKNRKKNLNLPHYA 1095

Query: 1081 QEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLS-----NEMAKQDFLKLVKHKF 1135
            +   Y     + + S  ++  + +  +D  E F D   S       + ++ F  L++ K+
Sbjct: 1096 RHDKYDPVLSKYNPSK-FLGSVSENFQDKLESFIDSNASLFKGQATVNEKKFRALMQLKY 1154

Query: 1136 VLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIK 1195
            + SL  PGE VG++ASQSVGEPSTQMTLNTFH AG G  NVTLGIPR++EI+  AS  IK
Sbjct: 1155 MRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASAAIK 1214

Query: 1196 TPVITCPLL 1204
            TP +T P+L
Sbjct: 1215 TPQMTLPIL 1223


>gi|440635899|gb|ELR05818.1| hypothetical protein GMDG_01895 [Geomyces destructans 20631-21]
          Length = 1708

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1288 (38%), Positives = 683/1288 (53%), Gaps = 179/1288 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC      CPGH GHI L VPVY+P   + L  LL+  C +CHHFK SR++V     K
Sbjct: 62   CTTCHLGALSCPGHVGHITLPVPVYHPTFMDQLLRLLRAKCAYCHHFKMSRKDVNLYHYK 121

Query: 61   LELIIKGDIIAAKSLD-LDLPSESS-----NPEDSDVSNKSSC-SMVTPRGNY--DNVRN 111
            L LI  G + AA+ LD +D+ ++ +       E SD  + +   + +  R  +   ++R 
Sbjct: 122  LRLIQAGLLSAAEELDNIDIVAKKAAAVEQEDESSDSGDDNGVETTIKQRLTFLKKSIRE 181

Query: 112  LKPQEW-----TSLQFAEAKLALLQ-FLKIETTK--CGNCKAKNPRISKPTFGWIHMNGM 163
             K   W      +   AEA+  +++ FLK  T    C NC+A +    K  F  I    M
Sbjct: 182  AKATPWDWKLEKNESVAEARREVIKSFLKSITVSKTCANCRAISNGFRKDRFIKIFEKPM 241

Query: 164  PHADIRANLIRGCNLGETF-----SGGEEEKDLGASSD-----VDAPETHSFNGTFPGTQ 213
               D   N  +   +           G  +K  G +SD     +D        G    T 
Sbjct: 242  SAKDEAKNAQQNLKIVNAMRIVSKDAGYAKKSNGYASDEGIADIDLSSNEEDEGE-GHTL 300

Query: 214  DTA---ARRHQKGSGAVPSGFKKQKDLFSGP---LLPSDVKDIIEKLWENEFELCSFISD 267
            D A   A R +  SG   +   KQK   +G    + P +V+  +  L+E E E+ S +  
Sbjct: 301  DVAGGLASRERSTSGT--TAISKQKPSTTGAERYVNPMEVRASLTLLFEKEQEILSLV-- 356

Query: 268  MQQQGFGKKAG---HSIFFLGVVLVPPIKFRLPSK-GGDSVMEHPQTVLLSKVLQA---- 319
               +   KKA       FFL  +LVPP K+R  ++ G   + E  Q  L  ++L A    
Sbjct: 357  YASRSSSKKAAVVTSEFFFLQTLLVPPNKYRPEARTGAGEIAEAQQNALYKQILTAGHMT 416

Query: 320  --------NIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDG-----KNAAGQRDMASG 366
                    N  LA+    + D +  +   W+ LQ SVN L D      + AAG+++   G
Sbjct: 417  AQISKELDNPALADTKYRRRDFSD-LQESWVKLQDSVNSLIDRDRNPIQGAAGKKN-EDG 474

Query: 367  ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
            I Q LEKKEGLFR+ +MGKRVN+A RSVISPDP +  NEIG+PP FA +LTYPE VT  N
Sbjct: 475  IKQKLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHN 534

Query: 427  VVKLRDSIINGAEIHPGATHYLDK----LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGK 482
              +L+ ++INGA+  PGA    ++    ++     P++  R S+  +L  S G       
Sbjct: 535  FKELQQAVINGADKWPGAAAIENENGQVINLRTKTPDE--RQSLANQLLASSGI------ 586

Query: 483  DSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNA 542
               N    K V+RHL +GDVVL+NRQPTLHKPSIM H  RVL GEKT+RMHYANC+TYNA
Sbjct: 587  -GANGARNKKVHRHLTNGDVVLMNRQPTLHKPSIMGHRARVLPGEKTIRMHYANCNTYNA 645

Query: 543  DFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTF 602
            DFDGDEMN+HFPQ+EV+RAEA  I + ++QY+  + G PLR LIQDHI  +  +T +DTF
Sbjct: 646  DFDGDEMNMHFPQNEVARAEALQIADTDHQYLAATAGKPLRGLIQDHISVSVWMTNRDTF 705

Query: 603  LNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI 662
             +R  + QL+Y+     SG        G+R+       E +P  PAI KP P WTGKQ+I
Sbjct: 706  FDRATYQQLVYNCLRPESG-----HIIGERI-------ETVP--PAIIKPFPQWTGKQII 751

Query: 663  TAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGK 722
            T +L +IT              P  +  T  N              L   +++  D+ G 
Sbjct: 752  TTILKNIT--------------PLGY--TSLN--------------LISKSQVPADRWGP 781

Query: 723  KKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQE 780
            K E                       E ++L    +L+ G++DK+Q   +  GL+H++ E
Sbjct: 782  KSE-----------------------EGQVLFQDGELITGILDKSQLGPSGGGLIHSLHE 818

Query: 781  LYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHL 840
             +G   AG +LS L RL T FL +  F+CG++DLL+  + E+ R+  L     IG  V  
Sbjct: 819  AHGPTVAGKMLSILGRLLTKFLHIRAFSCGMEDLLLTSEGEKTRREKLKDVHLIGLEVAA 878

Query: 841  EALELEDGAEI--DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSE 898
            + + LED      DP +L++ +E  +R   D      D+ M    NK  SS +    L  
Sbjct: 879  KYVTLEDRKPTANDP-ELRNRLEDVLR--DDTKQEGLDVMMNGSSNK-LSSEITKACLPH 934

Query: 899  GLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDW 958
            GL+K   KN +  MT SGAKGS VN   IS +LGQQ LEG+RVP MVSGK+LP F P++ 
Sbjct: 935  GLVKQFPKNQMQNMTVSGAKGSAVNANLISCNLGQQVLEGRRVPVMVSGKSLPCFKPFET 994

Query: 959  APRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISY 1018
              RAGG+I +RFLTG+RPQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E LK+ Y
Sbjct: 995  NVRAGGYIANRFLTGIRPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVEY 1054

Query: 1019 DYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMG 1078
            D SVRD+DGS+VQF YGEDG+DV +T  ++ F  L          + K    G    V+G
Sbjct: 1055 DTSVRDSDGSMVQFLYGEDGLDVTKTKHLTDFKFLLQNIESV-VAQMKL---GDDLEVIG 1110

Query: 1079 RNQEMIYKKCSGQLDASNAYIMELPDA----------LKDNAEKFADKFLS--------- 1119
             +QE I K     +  + A   ++ D           L   +E F     S         
Sbjct: 1111 EHQEKIQKMMKRGIKTAKANTADVSDPVLAHYHPGRHLYSTSESFNRSLSSYIKENPDGL 1170

Query: 1120 -------NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRG 1172
                   N  +K++   ++  K++ S+ +PGE VG++A QS+GEPSTQMTLNTFHLAG  
Sbjct: 1171 IKSKGNPNAYSKKELGPILNVKYLKSVVEPGEAVGIVAGQSIGEPSTQMTLNTFHLAGHS 1230

Query: 1173 EMNVTLGIPRLQEILTIASKDIKTPVIT 1200
              NVTLGIPRL+EI+  AS +I TP +T
Sbjct: 1231 AKNVTLGIPRLREIVMTASNNISTPSMT 1258


>gi|449549948|gb|EMD40913.1| hypothetical protein CERSUDRAFT_131304 [Ceriporiopsis subvermispora
            B]
          Length = 1727

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1307 (37%), Positives = 685/1307 (52%), Gaps = 185/1307 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC    + CPGHFGHI+L  PV++PL  N +Y LL+  C FCH FK SR  + K V K
Sbjct: 63   CATCRLTYYTCPGHFGHIELPAPVFHPLFMNNMYHLLRGACMFCHRFKVSRFVLCKFVAK 122

Query: 61   LELIIKGDIIAAKSLDLDLPSESS-----NPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQ 115
            L L+  G +IAA+SLD DL   +      + ED D     S      R N     +L   
Sbjct: 123  LRLLEHGFLIAARSLD-DLRVNTQRKARGDAEDEDDEPAESYEAFEMRVNAYVAAHLATA 181

Query: 116  EWT-------SLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADI 168
              +        L +   K  + +FLK   TK   C+  N      TF       +   D+
Sbjct: 182  SSSKRDSYKDGLVYQARKDVIQEFLKTAITK--KCQNPNCGAYAYTFRKEGHTKIIEYDL 239

Query: 169  --------------RANLIRGCNLGETF---SGGEEEKDLGASSDVDAP-ETHSFNGTFP 210
                          R +++     G T    +GG  +   G+    D+  E  S   +  
Sbjct: 240  SVKQKQAHEYLGLKRPDVLLDQKAGTTSHAPAGGMIDHMDGSDEQTDSEGEGDSVMSSGE 299

Query: 211  GTQDTAARRH--QKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI--- 265
             +   AA  H  +  SG V +   + + + +      + +  + +L+ NE  +CS +   
Sbjct: 300  ESAPLAASHHLPKSASGKVKTSRGRNERVMAA----EECRAHLRRLFTNESVMCSLLFGR 355

Query: 266  ----SDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANI 321
                + + + G    A   +FFL V+ V P +FR P+K G+ + EHPQ  LLSKVL  + 
Sbjct: 356  HGPFAPLTRHGLSL-ASADMFFLDVIPVSPTRFRPPAKMGEMLFEHPQNELLSKVLTTSY 414

Query: 322  YLAN------AYVNQPDNAKVIVAR---------WMNLQQSVNVLFDG-KNAAGQRD--- 362
             L +      A   +   A V   R          ++LQ  VN   D  KN A  R    
Sbjct: 415  RLRDLNDSLRAASVKGSGADVAAQRKLMQGLLDTLIHLQDDVNSFIDSSKNPAPVRQGKL 474

Query: 363  MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERV 422
              +G+ Q LEKKEGLFR+ +MGKRVNYA RSVISPD  +  +EIGIPP FA +LT+PE V
Sbjct: 475  PPAGVKQGLEKKEGLFRKHMMGKRVNYAARSVISPDVNIEPSEIGIPPVFARKLTFPEPV 534

Query: 423  TPWNVVKLRDSIINGAEIHPGAT---------HYLDKLSTMRLPPNKKMRISIGRKLDTS 473
            TP+N  +LR  +I G   +PGAT          +LDKL+        + R +I  +L T 
Sbjct: 535  TPFNFHELRQYVITGPRGYPGATMVEYEDGHLQFLDKLTV-------EQRTAIANQLLTP 587

Query: 474  R---GAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTL 530
            +       + G  +      K VYRHL DGD++++NRQPTLHKPS+M H  RVL+GEKT+
Sbjct: 588  QEGNHGSSRLGLGTRTAAVNKKVYRHLLDGDILILNRQPTLHKPSMMCHKARVLQGEKTI 647

Query: 531  RMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHI 590
            RMHYANC++YNADFDGDEMN+HFPQ++V+R+EA  I N +NQY+ P++G PLR LIQDH+
Sbjct: 648  RMHYANCNSYNADFDGDEMNIHFPQNQVARSEAMFIANTDNQYLVPTSGKPLRGLIQDHV 707

Query: 591  VSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIW 650
            V+   +T +D F  R+E+ QLLY +    +  G   G+             ++ L P IW
Sbjct: 708  VAGLWMTAQDAFFTREEYFQLLYGALRPENEPGHHDGR-------------LITLPPTIW 754

Query: 651  KPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLS 710
            KP+PLWTGKQ+I+ V+ +IT              P++F     N   Q+    +  GK S
Sbjct: 755  KPKPLWTGKQIISTVMRNIT--------------PENF--EGLNLHAQAKVPGHLWGKDS 798

Query: 711  KTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFA 770
            +                                     E  ++    +L+ GV+DK+ F 
Sbjct: 799  R-------------------------------------EGTVIFMDGELLCGVLDKSAFG 821

Query: 771  --DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHL 828
              ++G+VH+V ELYG++ AG LL  LSRLFT FLQ   FTC +DDL++    + +R   L
Sbjct: 822  ATEFGMVHSVYELYGADVAGKLLGILSRLFTKFLQHRAFTCRMDDLVLTPQADAKRTELL 881

Query: 829  HGSEEIGKRVHLEALELEDGA--EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKH 886
              +E +G    ++          E  P  L++ +E  +R   D  +A  DM +  +L + 
Sbjct: 882  RQNERLGTEGAIDNFPSLSSVPDEEKPSVLRNLLEDVLR--DDNKMAGLDMTVKGKLARL 939

Query: 887  TSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVS 946
            T  S+ +  +  GLL+    N +  MT SGAKGS VN QQIS  LGQQELEG+RVP MVS
Sbjct: 940  T-KSIADACMPHGLLRQFPHNHMQAMTLSGAKGSAVNAQQISCALGQQELEGRRVPVMVS 998

Query: 947  GKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRC 1006
            GKTLPSF P++    AGG++  RFLTG++PQE++FHCMAGREGL+DTAVKTSRSGYLQRC
Sbjct: 999  GKTLPSFKPFETKAIAGGYVASRFLTGVKPQEFFFHCMAGREGLIDTAVKTSRSGYLQRC 1058

Query: 1007 LIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFD-----ALAARERGRG 1061
            LIK+LE +++ YD +VR +D SI QF YG D +DV +   + +FD      L+   R R 
Sbjct: 1059 LIKHLEGIRVHYDNTVRGSDSSIYQFHYGGDSLDVTKQKHLLQFDFIVRNHLSLVHRHRP 1118

Query: 1062 RGRNKFCDKGSHTF------VMGRNQEM--------IYKKCSGQLDASNAYIMELPDALK 1107
            +      ++ +  +      +  R  E+        ++         S  +  ++ + +K
Sbjct: 1119 KSLEGVVNEDAPEYMKKVLKLKDRPSELAQFKPALSVFNPSRSLGSTSEKFAEKVEEYIK 1178

Query: 1108 DNAEKFADKFLSNEMAKQDF-------LKLVKH-KFVLSLAQPGEPVGLLASQSVGEPST 1159
             N      K    +  K+ +        KL+ H K++ SL +PGE VGLLASQ VGEPST
Sbjct: 1179 KNPHGLLKKKGEEDRLKRRYKPISNKHFKLLMHVKYMRSLVEPGEAVGLLASQGVGEPST 1238

Query: 1160 QMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVG 1206
            QMTLNTFH AG G  NVTLGIPRL+EI+  AS   KTP +T  +  G
Sbjct: 1239 QMTLNTFHFAGHGAANVTLGIPRLREIVMTASTKPKTPSMTMTVRPG 1285


>gi|390601472|gb|EIN10866.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Punctularia strigosozonata HHB-11173 SS5]
          Length = 1723

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/1297 (36%), Positives = 674/1297 (51%), Gaps = 165/1297 (12%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC    F CPGH+GHI+L  PV++PL    +Y +L+  C FCH FK     +     K
Sbjct: 63   CTTCRLNYFTCPGHYGHIELPSPVFHPLFMTNMYHVLRTTCLFCHKFKVGPTTLCVYAGK 122

Query: 61   LELIIKGDIIAAKSLDLDLP-------SESSNPEDSDVSNKSSCSMVTPRGNYDNVR--- 110
            L L   G ++AAKSLD  +P       +++   ED D   +SS         Y +++   
Sbjct: 123  LRLAEHGLLVAAKSLDDLIPQKKNKGSAQADGDEDEDGVIESSEDFAKRVNVYVDLQLAR 182

Query: 111  --NLKPQEWTSLQFAEAKLALLQ-FLKI-ETTKCGNCKAKNPRISKPTFGWIHMNGMPHA 166
              + K  ++      +A+  L+Q F++I +  KC NC A      K     I    +   
Sbjct: 183  ASSSKRDDYKDGLVYQARKDLIQEFIRISQLKKCMNCGAHGYTFRKEGHTKIIEYDLTRK 242

Query: 167  DIRANLIRG---------------CNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPG 211
                N+  G                +L ET +G + +  +  +     P     +     
Sbjct: 243  QKEQNIASGRRRPDVLHSVYHSSNAHLKET-TGDDSDVSMSDAEPAGDPTMSDEDQEMAS 301

Query: 212  TQDTAARRHQKGSGAVPSG-FKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI----- 265
             +D    +   G     +G  K ++      + P + +  + +L+ NE ++CS I     
Sbjct: 302  VEDENLHQIPTGPAKAANGTIKGKRGRNERVMAPEECRAHLRRLFSNEPKMCSLIFGRHG 361

Query: 266  --SDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL 323
              S  +  G    A   IFF+  + V P +FR P+K GD++ EH Q  LL++VL  +  L
Sbjct: 362  PFSKFRPDGHAT-ASADIFFMDAIPVSPTRFRPPAKMGDTLFEHAQNQLLTRVLNTSYKL 420

Query: 324  ---------ANAYVNQPDNAK------VIVARWMNLQQSVNVLFDG-KNAAGQRD---MA 364
                     A+    Q D A        ++   + LQ  VN   D  KN    R      
Sbjct: 421  RDLTRDLRAASVKSVQYDEATRRRILGALLDALVQLQVDVNSFLDSSKNPQPVRQGQLPP 480

Query: 365  SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTP 424
            +G+ Q LEKKEGLFRQ +MGKRVNYA RSVISPD  +  NEIGIPP FA +LT+PE VTP
Sbjct: 481  AGVKQGLEKKEGLFRQHMMGKRVNYAARSVISPDVNIEPNEIGIPPVFARKLTFPESVTP 540

Query: 425  WNVVKLRDSIINGAEIHPGATH------YLDKLSTMRLPPNKKMRISIGRKLDTSRGAIV 478
             NV ++R  +INGA  +PGAT       +   L  M +     +   + +  +  R +  
Sbjct: 541  ANVHEMRQLVINGARAYPGATMVEFEDGHQQSLDVMSVEARTALANQLLKPPEGERNS-S 599

Query: 479  QPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS 538
            + G  +      K VYRHL+DGDV+++NRQPTLHKPS+M H  RVL+GEKT+RMHYANC+
Sbjct: 600  KHGLYTRTTAANKKVYRHLRDGDVLILNRQPTLHKPSMMVHKARVLRGEKTIRMHYANCN 659

Query: 539  TYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTK 598
            +YNADFDGDEMN+HFPQ++V+RAEA  I N +NQY+  ++G PLR LIQDH+V+   +T 
Sbjct: 660  SYNADFDGDEMNIHFPQNQVARAEAMMIANTDNQYLVTTSGKPLRGLIQDHVVAGVWMTS 719

Query: 599  KDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTG 658
            K+ F  R+E+ QLLY +       G  TG+             ++ L P IWKP  LWTG
Sbjct: 720  KEAFFTREEYFQLLYGALRPEEEGGHITGR-------------LVTLPPTIWKPNALWTG 766

Query: 659  KQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKD 718
            KQ+I+ VL +IT         RG         T F A           G L   + + +D
Sbjct: 767  KQIISTVLLNITPSNA-----RG-------LNTEFKAKV--------PGYLWGKDSIEED 806

Query: 719  KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVH 776
            K                                ++    +L+ GV+DK+ F  ++YG+VH
Sbjct: 807  K--------------------------------VVFVDGELLCGVLDKSSFGASEYGMVH 834

Query: 777  TVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGK 836
            +V ELY S  AG LL  LSRLFT FLQ   FTC +DDL +    + +R++ L     +G 
Sbjct: 835  SVYELYSSEVAGRLLGILSRLFTKFLQHRAFTCRMDDLTLTPTGDAKRRDILQNGRNLGT 894

Query: 837  RVHLEAL-ELEDGAEID-PIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINE 894
               +E    L     +D P  L+S + + +R   D+ +A  D+ + ++L   T  ++ + 
Sbjct: 895  EAAMENFPSLVQVPPVDKPGALESLLREVLR--DDSKMAGLDVTVKTKLATLT-KAIADA 951

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
            ++  GL +    N +  MT SGAKGS VN QQIS  LGQQELEG+RVP M+SGKTLPSF 
Sbjct: 952  VMPRGLSRQFPLNHMQTMTLSGAKGSAVNAQQISCALGQQELEGRRVPVMISGKTLPSFK 1011

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
             ++    AGG++  RFLTG++PQE+YFHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE L
Sbjct: 1012 AFETKAIAGGYVASRFLTGIKPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGL 1071

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALA-------------------- 1054
            K+ YDY+VR +D SI QF YG D +DV +  ++ +FD  +                    
Sbjct: 1072 KVHYDYTVRGSDDSIYQFHYGGDALDVTKQKYLYQFDFTSRNELSLINKYQPGRINRIVN 1131

Query: 1055 ---ARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQ--LDASNAYIMELPDA-LKD 1108
               A E  +   R     +  +  ++ +    +Y   + +   ++  +Y+   P   LK 
Sbjct: 1132 DSDALEYSKKIIRKSAPKRHKYAPILSKFNPSLYLGATSERFAESVESYLKFNPHGLLKS 1191

Query: 1109 NAEKFADKFLSNE--MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTF 1166
               + A +       + K  F  L+  +++ +L  PGE VGLLASQ VGEPSTQMTLNTF
Sbjct: 1192 RTTENAVELRRRHPLLTKDRFRLLMNVQYMRALVDPGEAVGLLASQGVGEPSTQMTLNTF 1251

Query: 1167 HLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            H AG G  NVTLGIPRL+EI+  ASK  KTP +  P+
Sbjct: 1252 HFAGHGAANVTLGIPRLREIVMTASKQPKTPSMIVPI 1288


>gi|347831222|emb|CCD46919.1| similar to DNA-directed RNA polymerase I subunit [Botryotinia
            fuckeliana]
          Length = 1703

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1277 (38%), Positives = 680/1277 (53%), Gaps = 161/1277 (12%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC    F CPGH GHIDL  PVY+P   + +  LL+  C +CH F+ SR+EV + V K
Sbjct: 62   CTTCNLSSFSCPGHAGHIDLPAPVYHPTFMDQVLRLLRSKCKYCHQFRMSRKEVNRYVCK 121

Query: 61   LELIIKGDIIAAK---SLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQ-- 115
            L LI +G + AA+   ++++  P E   P  SD  ++S    V  R      + LK    
Sbjct: 122  LRLIQQGLLSAAEEIENIEVAQPKEGEEPA-SDSDDESPIDSVIRRRLAFVKKELKAAKA 180

Query: 116  ---EWTSLQ---FAEAKLALLQ-FLKIETTK--CGNCKAKNPRISKPTFGWIHMNGMP-- 164
               EW   +    AEA+  +++ F+K  T    CGNC+  +P   K  +  I    +   
Sbjct: 181  SGWEWRREKHEGVAEARRVVVKSFMKAITAGRLCGNCQGISPTYRKDRYVKIFEKSLSVK 240

Query: 165  -HADIRANLIRGCNLGETFSGGEEEKDLGAS-SDVDAPETHSFNGTFPGTQDTAARRHQK 222
              A +     R  N  +   G ++++D     +D+D       +     + D        
Sbjct: 241  DKAKMAQGSYRAVNAVQLVHGEKKDRDGDEGIADIDLESNEDEDEGEGESLDVDGDVVMD 300

Query: 223  GSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHS-I 281
            GS A  S   +   L    +   +VK  +  L+E E E+ S + + +       A  + +
Sbjct: 301  GS-ATSSSKPRVAPLPQRYVDAMEVKASLTLLFEKEQEILSLVYNSRSSAKKPSAVKADM 359

Query: 282  FFLGVVLVPPIKFRLPSKGGD-SVMEHPQTVLLSKVLQA-----NIYLANAYVNQPDNAK 335
            FFL  +LVPP ++R  +K GD  + E  Q  L  ++L++      IYL     ++P  ++
Sbjct: 360  FFLQTLLVPPNRYRPEAKTGDGEIAEAQQNSLYKQILKSADTVNQIYLDIQNPDRPSQSQ 419

Query: 336  VIVAR--------WMNLQQSVNVLFDG-----KNAAGQRDMASGICQLLEKKEGLFRQKL 382
             +  R          ++Q +VN L D      + AAG+++   GI Q LEKKEGLFR+ +
Sbjct: 420  TLRKRDFFDLQEACCSMQDAVNSLIDRDRNPIQGAAGKKN-EDGIKQKLEKKEGLFRKNM 478

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
            MGKRVN+A RSVISPDP +  NEIG+PP FA +LTYPE VT  N  +++ ++ING +  P
Sbjct: 479  MGKRVNFAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFKEMQQAVINGVDKWP 538

Query: 443  GATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIV-QPGKDSDNEFEG---KMVYRHLQ 498
            GA    ++   +         I++  K    R A+  Q    S N   G   K VYRHL 
Sbjct: 539  GAAAIENENGQV---------INLRSKTQDERMALANQLLASSSNGASGARNKKVYRHLT 589

Query: 499  DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
            +GDVVL+NRQPTLHKPSIM H  RVL GEKT+RMHYANC+TYNADFDGDEMN+HFPQ EV
Sbjct: 590  NGDVVLMNRQPTLHKPSIMGHRARVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPQTEV 649

Query: 559  SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
            +RAEA  I + ++QY+  + G PLR LIQDHI  +  +  KDT+ +R  + QL+Y+    
Sbjct: 650  ARAEALQIADTDHQYLSATAGKPLRGLIQDHISVSVWMCNKDTYFDRATYQQLIYNCIRP 709

Query: 619  SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT-RGRPPFV 677
             S  G   G            + ++ + PAI KP   WTGKQVIT +L +IT     P  
Sbjct: 710  ES--GHIVG------------ERIVTVPPAIIKPVARWTGKQVITTILKNITPLNCAPIS 755

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEA 737
            +    + P D    R+ AD +                                       
Sbjct: 756  LTGKTQTPAD----RWGADSE--------------------------------------- 772

Query: 738  EKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALS 795
                       E  +L    + + G++DKAQ   A  GL+H+V E+YG  TAG LLS L 
Sbjct: 773  -----------EGVVLFNGGEFITGILDKAQIGPAGGGLIHSVHEVYGPATAGKLLSILG 821

Query: 796  RLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG--AEIDP 853
            RL T +L M  FTCG+DDL +  + E+ R   L  + +IG  V  + + LED    E D 
Sbjct: 822  RLLTKYLHMRAFTCGMDDLRLTPEGEQTRIETLSDAGKIGLEVAAKYVSLEDQKPTETDQ 881

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
             +L + +E  MR   D+  A  D  M ++  K  S+S+ N  L +GL+K    N +  MT
Sbjct: 882  -ELLNRLEDVMR--DDSKQAGLDALMNARAGK-LSTSITNACLPQGLVKQFPHNQMQNMT 937

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN   IS +LGQQ LEG+RVP MVSGK+LP F P+D   RAGG+I++RFLTG
Sbjct: 938  VSGAKGSAVNANLISCNLGQQVLEGRRVPLMVSGKSLPCFKPFDTHIRAGGYIVNRFLTG 997

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            +RPQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E LK+ YD SVRD+DGS++QF 
Sbjct: 998  IRPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVEYDTSVRDSDGSMIQFI 1057

Query: 1034 YGEDGVDVHQTSFISKF--------DALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIY 1085
            YGEDG+DV +   ++ F          LA    G  R    F +K +   ++ R ++ + 
Sbjct: 1058 YGEDGLDVTKQKHLTDFKFLLQNLMSELAQLNYGDPRYETIFEEKEA---IIKRMKKALK 1114

Query: 1086 KKCSGQLDA-----------------SNAYIMELPDALKDNAEKFA-DKFLSNEMAKQDF 1127
               +  L+                  S  Y   L + +K N +    DK   N +  +  
Sbjct: 1115 HAKANDLNGPDPVLSEYNPGKYGYATSEKYFETLTNYMKTNPDGLVKDKDHPNGVGPRKA 1174

Query: 1128 LK-LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            L+ ++  K++ S+ +PGE VG++A QSVGEPSTQMTLNTFHLAG    NVTLGIPRL+EI
Sbjct: 1175 LEPVLVAKYLKSVVEPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHSSKNVTLGIPRLREI 1234

Query: 1187 LTIASKDIKTPVITCPL 1203
            +  AS  I TP +T  L
Sbjct: 1235 VMTASNHISTPSMTLTL 1251


>gi|219114393|ref|XP_002176367.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402613|gb|EEC42603.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1674

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/1258 (38%), Positives = 667/1258 (53%), Gaps = 138/1258 (10%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC  R   CPGHFGHI+L VPVY+PLLF  L  LL+  CF CH  KA  R +     K
Sbjct: 72   CPTCALRASHCPGHFGHIELAVPVYHPLLFPDLLQLLRIKCFACHKLKAPSRTLATLRAK 131

Query: 61   LELIIKGDIIAAKSLDLDL--PSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNL-----K 113
              L+ + D+    +LD +L            D +  S+  + + +   D +  +      
Sbjct: 132  FHLLYRHDLTRLTALDRELLVAIRLGRTSGEDRAENSTAKIRSAKDVADALDKVLRSHQP 191

Query: 114  PQEWTS--------------LQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIH 159
            P + TS               + A+A L   + +K    +C +C A NP+I + +F  + 
Sbjct: 192  PTDSTSPSTTKLNSFERNLRKELAKAVLTACKGVK----RCAHCGAYNPKIRQDSFNKLF 247

Query: 160  MNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARR 219
               +    +RAN +                    +++ D+ +T     T  G +D+ +  
Sbjct: 248  QGALSATSLRANSVENVQFTSALIQASNATS-DRATNYDSDDTDRGENTMSGNEDSDSED 306

Query: 220  HQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGH 279
             +           K+ D+F   +   +V+  I++ W+ +  L   +     Q    + G+
Sbjct: 307  DEDDDEVANGTKPKKSDMF---MHAGEVQAQIKRTWQTDPFLLHCVFGGSSQSL--QDGY 361

Query: 280  SIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
             +FFL  V VPP +FR         +EH QT  LS++++ N  +  ++    D  +    
Sbjct: 362  QLFFLQAVPVPPSRFRPAMYLNGMAVEHSQTSYLSQMIRFNESIRESFAAS-DEPRAYSG 420

Query: 340  RWMNLQQSVNVLFDGK---NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
             W++LQ +VN   D     +A     +A GI Q+LE+KEGLFR+ +MGKRV+YACRSVIS
Sbjct: 421  -WIDLQTAVNCFMDSAKDPSATPTNLVAPGIKQILERKEGLFRKNMMGKRVDYACRSVIS 479

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PDPY+  NEIG+P YFA  LTYP  VT  NV ++R  +  G   +PGA          R 
Sbjct: 480  PDPYIGTNEIGLPRYFATVLTYPTPVTDLNVKEMRALVERGPHNYPGA----------RW 529

Query: 457  PPNKKMRISIGRKLDTSRGAIV-QPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
               +  R+ +G+     R AI  Q            +V R L+DGD VL+NRQPTLHKP 
Sbjct: 530  VELQGKRVDLGKMNTQKREAIAAQLLTYLKRGGMPAIVGRQLRDGDYVLMNRQPTLHKPG 589

Query: 516  IMAHVVRVLKG--EKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQY 573
            IMAH VR+L    +KT+RMHYANC+TYNADFDGDEMN HFPQ +++RAEA  I   + QY
Sbjct: 590  IMAHRVRILHNPTQKTIRMHYANCNTYNADFDGDEMNCHFPQSDLARAEAQYIARTDLQY 649

Query: 574  VRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRV 633
            + P++G PLR LIQDH+V    LTK+DTF  + E  QLL+++  S  GL          +
Sbjct: 650  IVPTDGTPLRGLIQDHVVGGVKLTKRDTFFFKWEVQQLLFAALASLKGL---------EI 700

Query: 634  LISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRF 693
            + S +  E++P  PA+ +P  LWTGKQVIT +LNH+ +G                     
Sbjct: 701  IRSGTNIELVP--PALVRPRELWTGKQVITIILNHLRKG--------------------- 737

Query: 694  NADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLL 753
             +D+ S++  N  G            + +K +  +   G E+E            E  +L
Sbjct: 738  -SDRDSEKMSNLPGL----------STSRKSKTPDTAFGAEQE------------EHLVL 774

Query: 754  IYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQ-MHGFTCG 810
            I   +L+RGV+DKA F   D+ LVH V E YG   AG LL+   RLFT ++Q   G +C 
Sbjct: 775  ILDGELLRGVLDKAAFGATDFSLVHAVYEAYGPEKAGLLLNMFGRLFTAYIQYFAGHSCR 834

Query: 811  VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGG-GD 869
            ++DL++    +  R+  +  S  IG R      + E G         ++I + + G  G 
Sbjct: 835  MEDLILTSASDISRRMLVQKSYNIGARAAKAWADSEGG---KAASTAAKIGQLLSGTEGS 891

Query: 870  AAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISS 929
               A  D  M SQLN   SS+++ + L +GL  P   N   LMTT+GAKGS VN  Q++ 
Sbjct: 892  TNFAALDGFMQSQLNP-LSSAIVKKCLPDGLAVPFPYNTFGLMTTTGAKGSIVNQSQVTC 950

Query: 930  HLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREG 989
             LGQQ LEG+RVPR+ SG+TLPSF P+D  PRA GF++DRFLTG+RPQEYYFHCMAGREG
Sbjct: 951  ALGQQALEGRRVPRLSSGRTLPSFAPYDPNPRADGFVMDRFLTGIRPQEYYFHCMAGREG 1010

Query: 990  LVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS- 1048
            LVDTAVKTSRSGYLQRCL+K+LE LKI YDY+VR+A+GS+VQF YGEDG+D  + S++  
Sbjct: 1011 LVDTAVKTSRSGYLQRCLMKHLEELKICYDYTVRNAEGSVVQFLYGEDGLDPTKASYLDC 1070

Query: 1049 ---KFDALAARERGRGRGRNKF---------CDKGSHTFVMGRNQEMIY-------KKCS 1089
                F+ +A  +    R               D   H   +  NQ +I            
Sbjct: 1071 SEKSFEYIARNKESLERQNTALPFSSIALAAADATRHV-ELENNQNLIAVADPILSTPAR 1129

Query: 1090 GQ-LDASNAYIMELPDALKDNA---EKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEP 1145
            G  L +S A + E       NA    +         ++  D   L+  K+  S+  PGE 
Sbjct: 1130 GHLLGSSGACVSERVAGATHNALNDPEMMRVLKQINVSDADLGVLIGAKYSSSVCAPGEA 1189

Query: 1146 VGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            VG +A+QSVGEPSTQMTLNTFHLAG G  NVTLGIPRL+EI+  AS+D+KTP ++ PL
Sbjct: 1190 VGSIAAQSVGEPSTQMTLNTFHLAGAG-ANVTLGIPRLREIIMTASRDLKTPTMSVPL 1246


>gi|224002505|ref|XP_002290924.1| DNA directed RNA polymerase i, alpha subunit [Thalassiosira
            pseudonana CCMP1335]
 gi|220972700|gb|EED91031.1| DNA directed RNA polymerase i, alpha subunit [Thalassiosira
            pseudonana CCMP1335]
          Length = 1671

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1283 (38%), Positives = 687/1283 (53%), Gaps = 174/1283 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG  Q LCPGHFGHI+L VPVY+PL F  L   +K  C  CHHF+ S+R       K
Sbjct: 70   CITCGNVQNLCPGHFGHIELCVPVYHPLFFPKLLLFMKMKCLACHHFRLSKRACRVFCTK 129

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPE----DSDVSNKSSCSMVTPRGNY-----DNVRN 111
            L L+  G +  A  LD ++ + +S       D  +S +    M++          D    
Sbjct: 130  LHLVDVGRMGEAMGLDEEMAALASKASVGGGDGKMSKQVKQEMMSSAAVLIDELLDQKMA 189

Query: 112  LKPQEWTSLQ--------FAEAKLALLQFLKIETT--KCGNCKAKNPRISKPTFGWIHMN 161
            L+P +  S +         A  +  L +F +  T   KC NC A + +I    F  +   
Sbjct: 190  LRPPDGQSAEEVTHTMHERAVRRKILKEFQQACTKCLKCANCNAFSNKIRHDQFNKMFQV 249

Query: 162  GMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQD-TAARRH 220
             +P  + + + +               +D  A++     +  + + T     D T     
Sbjct: 250  ALPARNAKVSDV-------------SREDFPANTKGKKKKKSTSSSTVDEEIDPTGGPIS 296

Query: 221  QKGSGAVPSGFKKQK-DLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGH 279
            +K + +     +  K D F   L   +V+      W NE  LCS       + FG   G+
Sbjct: 297  RKATVSTTKNIEASKQDNFMHAL---EVEAQCRLTWNNEPFLCS-------KFFGWGKGY 346

Query: 280  SIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYV----------- 328
            ++FFL  V VPP +FR P   G+  +EH Q   LSKVL+ N  + +A+            
Sbjct: 347  TLFFLRAVPVPPSRFRPPVIMGNMTVEHSQNFYLSKVLELNARIRSAFATIHELTQEEAD 406

Query: 329  --NQPDNAKVIVARWMNLQQSVNVLFDG-KNAAGQRDMA-SGICQLLEKKEGLFRQKLMG 384
              N       ++  W++LQ +VN   D  ++  G  + A +GI QLLEKKEG+FR+ +MG
Sbjct: 407  LKNTDKGQANMLEIWVDLQTTVNCFMDSTRDPKGTANNAPNGIRQLLEKKEGIFRKHMMG 466

Query: 385  KRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGA 444
            KRVN+ACRSVISPDPY+  NEIG+P YFA  LT+P  VT  N+ ++R  +  G   +PGA
Sbjct: 467  KRVNFACRSVISPDPYIGTNEIGLPLYFAKTLTFPTPVTALNIAEMRKLVQRGPLQYPGA 526

Query: 445  THYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVL 504
                     +  P  +  RI + +  + +R AI       +   +   V R L+DGD+VL
Sbjct: 527  VW-------VEFPNGQ--RIDLSKMKEGNRHAIAARLLADNGVVK---VGRQLRDGDMVL 574

Query: 505  VNRQPTLHKPSIMAHVVRVL--KGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
            +NRQPTLHKP IMAH VRVL    + TLRMHYANC+TYNAD+DGDEMN HFPQ  ++ AE
Sbjct: 575  MNRQPTLHKPGIMAHRVRVLFSPTQNTLRMHYANCNTYNADYDGDEMNCHFPQSYLAAAE 634

Query: 563  AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL 622
            +  I   + Q++ P++G PLR LIQDH+ +   LT  +TF+ R+ + QLL+++      L
Sbjct: 635  SQFIAGTDLQFIVPTDGSPLRGLIQDHVDAGVKLTCMNTFIEREVYQQLLFAA------L 688

Query: 623  GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGG 682
            GS    PG  ++ S +  E+LP  PAI KP+ LWTGKQVI+ +LNH+ +G          
Sbjct: 689  GSL---PGLELIRSDANIELLP--PAIRKPKELWTGKQVISTLLNHLRKGN--------- 734

Query: 683  KLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKS 742
                         D+  D   N  G       +  ++  K      G             
Sbjct: 735  -------------DRDEDPSFNFPG-------LSMERKAKTPATAFGA------------ 762

Query: 743  KEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTV 800
                 +E  +++   DLV+G++DKA F  +++ LVH V E YG + AG LL+AL RLFT 
Sbjct: 763  ---SWNEHMVIVRDGDLVQGILDKAAFGASEFSLVHAVYEAYGPSRAGLLLNALGRLFTA 819

Query: 801  FLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIK---- 855
            ++Q + G +C ++DL++  D + E++  L   E  G +V +  +  ++     P+K    
Sbjct: 820  YIQYYTGHSCRMEDLILTPDAD-EKRRQLVKVESDGGKVEIPPVA-QNPKSKQPLKPHEK 877

Query: 856  --LKSEIEKAMRGG-GDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLM 912
              + S+I + + GG G    A  D  M SQ+N   +S +I   L +GL  P  +N   LM
Sbjct: 878  ATVASKIGELLSGGDGKENAAALDGFMQSQVNP-LASDIIKICLPDGLAVPFPENTFGLM 936

Query: 913  TTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLT 972
            TT+GAKGS VN  Q+S  LGQQ LEG+RVPRM SG+TLPSF P+D  PRA GFI DRFLT
Sbjct: 937  TTTGAKGSMVNQSQVSCSLGQQALEGRRVPRMSSGRTLPSFAPYDPNPRADGFITDRFLT 996

Query: 973  GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQF 1032
            G+RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK+LE LK+SYD++VRD +G +VQF
Sbjct: 997  GVRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKHLEELKVSYDHTVRDGEGGVVQF 1056

Query: 1033 CYGEDGVDVHQTSFIS------------------KFDALAARE-----RGRGRGRNKFCD 1069
             YGEDG+D  + + +                   ++ AL         +   R +     
Sbjct: 1057 VYGEDGIDPTKAAHLDCESRTFQFLARNHESLKKRYPALPGSTLDIAVKDSRRAQETTPA 1116

Query: 1070 KGSHTFVMGRN------QEMIYKKCSGQLDASNAYIMELPDALKDNAEK--FADKFLSNE 1121
            +  H  ++          +   +  + +L +S A + E    L  NA K     K L N 
Sbjct: 1117 ESFHCEIIKPGVPDPIVSDTARENGAHRLGSSGACVSEHVANLASNAMKDTGVKKALENS 1176

Query: 1122 -MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGI 1180
             ++K+ F  LV  K+  +LA PGE VG +A+QS+GEPSTQMTLNTFHLAG G  NVTLGI
Sbjct: 1177 GLSKEGFSALVAAKYSSALAHPGEAVGSIAAQSIGEPSTQMTLNTFHLAGAG-ANVTLGI 1235

Query: 1181 PRLQEILTIASKDIKTPVITCPL 1203
            PRL+EI+  ASK++KTP ++ PL
Sbjct: 1236 PRLREIIMTASKELKTPTMSIPL 1258


>gi|340508051|gb|EGR33854.1| hypothetical protein IMG5_034860 [Ichthyophthirius multifiliis]
          Length = 1642

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1327 (36%), Positives = 691/1327 (52%), Gaps = 229/1327 (17%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C+TCG     CPGH  HI+L++PVYNP L + L  LL+ +C  C  F+ +++++    + 
Sbjct: 70   CETCGCEGLDCPGHMAHIELLLPVYNPFLVDKLLKLLRTLCLNCFKFRMTKQKLRMYTKV 129

Query: 61   LELIIKGDIIAAK----------SLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVR 110
              LI  G +  AK          SL     ++    E  +   KSS    +     +N +
Sbjct: 130  FTLIKLGYVQDAKEYKSIQESLFSLQASSTNQKQQQEPQNNRRKSSECKTSDTELINNQK 189

Query: 111  NLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFG-------------- 156
             +  QE  + +  +  L +L+  K +     N K + P   K                  
Sbjct: 190  IISSQEQKANKMLQNNLKILEEKKAQILSLINVKNE-PEFFKNGINSTTAMNNAFDEILK 248

Query: 157  --WIHMN--GMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGT 212
              W H+N    PH   + + +R     + F     +K      + D PE           
Sbjct: 249  EFWAHINIGKCPHCKQQQSAVRKEGFSKFFVA---KKGKNNHEEQDEPE----------- 294

Query: 213  QDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFIS---DMQ 269
                    Q+    +    K QK      L P  +K I++  W  E ++   I    D+ 
Sbjct: 295  --------QEKKQDISEKTKNQK-----YLDPIQIKQIMQLFWSKEKKILDLIFGRIDVT 341

Query: 270  QQGFGK--------KAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANI 321
            Q+            K  +++FF+ V+ VPP +FR  +K G+    H  TV+L+K++Q N+
Sbjct: 342  QKSLKNTKKGFKIFKNDYNMFFIEVIPVPPNRFRPENKLGEQTFLHGHTVVLTKIIQFNV 401

Query: 322  YLANAYVNQPDN------------------------------------AKV--IVARWMN 343
             L    V Q  N                                     K+  I+++W++
Sbjct: 402  ELRQLIVLQNQNLTEDKKKKLLDQLDSKFKNYLQLKQNTQFQQSLTNFVKINDIISKWLD 461

Query: 344  LQQSVNVLFD-GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLA 402
            +Q SVN+ FD  K++  Q    +GI QLLEKKEGLFR K+MGKRVNYA RSVISPDP L 
Sbjct: 462  IQDSVNIFFDSAKSSKAQDREGTGIRQLLEKKEGLFRMKMMGKRVNYAARSVISPDPNLN 521

Query: 403  VNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP-NKK 461
             NE+G+P + A +LT+PE V  +NV  LR  IING   HPGA   ++  + + L   N++
Sbjct: 522  TNEVGVPLFVAKKLTFPEHVNEYNVKFLRKLIINGPFQHPGANFIIENGNKISLEALNEQ 581

Query: 462  MRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVV 521
             RI + + L               N  + K+VYRHLQ GDV+L NRQPTLHKPS+M+H+ 
Sbjct: 582  QRIGLAKTLL--------------NNSKNKVVYRHLQSGDVLLFNRQPTLHKPSLMSHIA 627

Query: 522  RVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDP 581
            RVL  E+T+RMHYANC +YNADFDGDEMN+HF Q  ++RAE Y+I   + Q++  +NG P
Sbjct: 628  RVLPREQTIRMHYANCKSYNADFDGDEMNLHFLQSHLARAEGYHISLNDRQFINATNGVP 687

Query: 582  LRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQE 641
            LR LIQD IVSA  LT K+ F N++EF  LLYS+  +     +  GKP           +
Sbjct: 688  LRELIQDSIVSAVYLTHKEKFFNKEEFQLLLYSATWNMFQNNNIQGKP----------YK 737

Query: 642  VLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDR 701
            +  L P+I KP+ LWTGKQ+I+ ++  + +       E+G  +    FK++ + ++ S  
Sbjct: 738  IFMLPPSILKPQKLWTGKQLISNIIKIVVQQNQTKDYEQGIYME---FKSKLSQEELSGI 794

Query: 702  KKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVR 761
             K+D                                             ++LI  N+L++
Sbjct: 795  YKDDT--------------------------------------------QVLIKDNELLQ 810

Query: 762  GVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILK 818
            GV+DK  F   A YGL+H+  ELYG+N  G L +AL++L +  LQMHGFTCGVDD+L+ K
Sbjct: 811  GVLDKNSFGAGATYGLMHSFYELYGANLTGKLFTALAKLLSTHLQMHGFTCGVDDILVEK 870

Query: 819  DKERERKNHLHGSEEIG----KRVHLEALELEDGAEIDPIKLKSEI-------------- 860
            + E+ R   +  + + G     R  L+  E E G + D +  +SEI              
Sbjct: 871  NIEQIRLQEIKKAHKQGLLACAREFLDDKEFEIGEKWD-LYGRSEIFQDKKRKKKPENDY 929

Query: 861  ---EKAMRGGGDAAVAYFDMKMTSQLNKHTS------SSVINELLSEGLLKPTGKNWISL 911
               E  + G     +    + + +Q N + S      S+++N  L+ GL+K    N  S 
Sbjct: 930  LSTENQILGKIQQKLIRDPLSVENQDNIYKSTLSQNASTILNITLN-GLIKKFPYNNFST 988

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            MT SGAKGSKVN  Q+S+ LGQQELEGKRVP M +GKTLP F P+D  PRAGGFI DRFL
Sbjct: 989  MTNSGAKGSKVNHTQVSALLGQQELEGKRVPTMSTGKTLPCFVPYDPNPRAGGFISDRFL 1048

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            +GLRP E++FHCMAGREGL+DTAVKTSRSGYLQRCL+K+LE LK++YDY+VRD+D SIVQ
Sbjct: 1049 SGLRPAEFFFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLESLKVAYDYTVRDSDNSIVQ 1108

Query: 1032 FCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGR----NQEMIYKK 1087
            F YGED +D ++  ++ K+  L+   +   +    +  K SH F   +     ++   +K
Sbjct: 1109 FYYGEDCIDTNKVKYLEKYRFLSENFKSFSQKYEPYNLKESHDFTSVQKFLSKRKKTPEK 1168

Query: 1088 CSGQLDASN----AYIMELPDAL----------KDNAEKFADKFLSN-EMAKQDFLKLVK 1132
               Q   SN     YI  + + +          ++N   +++ F    E+    F  L  
Sbjct: 1169 HQNQTIMSNFLPGKYIGSISEKVYKSVREYIKKEENQNGYSNIFSQKPEITPAKFRLLYN 1228

Query: 1133 HKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASK 1192
             K++ SL QPG+ VG LA+Q++GEPSTQMTLNTFHLAG G +N+TLGIPRL+EIL  A+ 
Sbjct: 1229 IKYLNSLIQPGDSVGCLAAQAIGEPSTQMTLNTFHLAGHGGVNLTLGIPRLREILMTATD 1288

Query: 1193 DIKTPVI 1199
             +KTP +
Sbjct: 1289 KLKTPAM 1295


>gi|167522056|ref|XP_001745366.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776324|gb|EDQ89944.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1592

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/1255 (38%), Positives = 674/1255 (53%), Gaps = 184/1255 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC      CPGH GHI+L V VY+PL F  LY LL+  C  CH FKA    ++    +
Sbjct: 54   CTTCHLLGTHCPGHMGHIELPVHVYHPLFFQQLYQLLRAKCRLCHKFKAGDVPLQLLQHQ 113

Query: 61   LELIIKGDIIAAKSLD--LDLP--------SESSNPEDSDVSNKSSCSMVTPRGNYDNVR 110
            L+L+ +  ++ A++L+  LDLP          S  PE    + ++S + V  R   +   
Sbjct: 114  LDLLARDALVEARNLEDALDLPRLPSDEGQDPSEGPEHLRAAFEASMARVMERQASE--- 170

Query: 111  NLKPQEWTSLQFAEAKLALLQ-FLK--IETTKCGNCKAKNPRISKPTFGWIHMNGMPHAD 167
              +P    S+  A+ +  L++ FLK  +    C +C A + R++      I  N +P   
Sbjct: 171  --RPNPANSIHVAKYRRELIEAFLKNTVNIKSCAHCGAASRRLTHEASVKIFANPLPQKQ 228

Query: 168  IRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAV 227
             RA ++            ++ +++     +      S +   P  +DT   + +      
Sbjct: 229  -RARMV-----------AQKLEEMPLLPSIAEAYLTSGHRDEPRGEDTGVSQREL----- 271

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
               + +  DL +  +  S V      L  N+    + IS  +            FFL V+
Sbjct: 272  ---WARHADLLTN-IFASRV------LGVNDDGSATRISSYES-----------FFLRVL 310

Query: 288  LVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY---VNQPDNAKVIVAR---- 340
             VPP +FR PS  G    E+ QT+ L  +++    L + +   +++ D       R    
Sbjct: 311  PVPPNRFRPPSLMGGQTFENSQTITLGAIIKDVDQLRDIFKMRMSEEDGNVAEYERKRVE 370

Query: 341  -----WMNLQQSVNVLFDGKNAAGQR--DMASGICQLLEKKEGLFRQKLMGKRVNYACRS 393
                 W  LQ  VN+L D   A G+   D+  GI QLLE+KEGLFR  +MGKRVNYA R+
Sbjct: 371  NLNRAWQQLQSHVNILIDSSLAGGRAALDVQPGIRQLLERKEGLFRMHMMGKRVNYAART 430

Query: 394  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLST 453
            VISPDP +  NE+G+P  FA RLTYP+ VTPWNV  LR  ++NG ++HPGATH +D+   
Sbjct: 431  VISPDPMIGTNEVGVPDCFATRLTYPQPVTPWNVNYLRQCVLNGPDVHPGATHVMDEDGH 490

Query: 454  MR-LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLH 512
            +  L      R+ I  +L T       P   SD     K+V RH+++GD VL+NRQP+LH
Sbjct: 491  VTVLSRELSKRVPIADQLLTP-----SPKARSDRP---KIVMRHIKNGDWVLMNRQPSLH 542

Query: 513  KPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQ 572
            K SIMAH VRVL GE+T+R+HY+NC +YNADFDGDEMN+HFPQ E +RAEA  I + N Q
Sbjct: 543  KSSIMAHQVRVLTGERTMRLHYSNCKSYNADFDGDEMNLHFPQSEFARAEASEIASNNFQ 602

Query: 573  YVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQR 632
            Y+  + GDPLR LIQDH+++A  +  KD+F +R  +   +YS+              G R
Sbjct: 603  YIGLA-GDPLRGLIQDHVIAAVKMCCKDSFYDRHHYQTFVYSALKDE--------YKGTR 653

Query: 633  VLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 692
            ++        +P  PA+ KP+ LWTGKQ+IT +L ++T             L Q      
Sbjct: 654  IV-------TVP--PAMIKPQRLWTGKQIITTILKNLT-------------LNQTGMNLY 691

Query: 693  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL 752
              A  ++    NDKG L                  EG                   E  +
Sbjct: 692  GKAKIKNAWSANDKGGL------------------EG-------------------ESTV 714

Query: 753  LIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
            ++   +L+ G++DKAQ  +  YG+VH V E+YG  TAG  LSAL R++T++L+MHG T  
Sbjct: 715  IVRNCELLCGILDKAQVGNSTYGIVHAVYEVYGGRTAGEFLSALGRVWTMWLKMHGHTLC 774

Query: 811  VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
            +DDL++  + +  R+  L  S   G       ++ +D  + D   LKS ++  +R  G++
Sbjct: 775  IDDLILRPEFDAARREILDDSTTHGHEAAANYVKQDDWRDDD--LLKSNLQTILRDPGES 832

Query: 871  AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
                 D  M+   NK   S VI + +  GL+KP   N   L+  SGAKGS VN  QIS  
Sbjct: 833  K--GLDSAMSGAANK-IQSKVIEKTMPHGLIKPFPHNNFQLIVQSGAKGSNVNATQISCM 889

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            LGQQ LEG+RVP M SGKTLPSF  +D + RAGG I DRFLTGLRPQEY+FHCMAGREGL
Sbjct: 890  LGQQMLEGRRVPVMSSGKTLPSFPAFDASLRAGGLITDRFLTGLRPQEYFFHCMAGREGL 949

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKF 1050
            VDTAVKTSRSGYLQRCLIK+LE +K+ YD +VRD+DGS+VQF YGED +DV +T+ ++ F
Sbjct: 950  VDTAVKTSRSGYLQRCLIKHLEDIKVHYDLTVRDSDGSVVQFRYGEDALDVTKTNSLTNF 1009

Query: 1051 DALA----------------------ARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKC 1088
            D +A                       R+ G+ + +        H  V+   +   +  C
Sbjct: 1010 DFMALNYPALLSRYNVEALGDAFPGKVRQAGKMQ-QEAIAQPAKHDPVLATLRPDTHFGC 1068

Query: 1089 SGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGL 1148
                  S  +  +L   L  +  + AD  LS  +  + F +L+      ++A+PGEPVG+
Sbjct: 1069 -----VSENFYKKLQGYLTKDPARLAD--LSKGLDAKRFEQLMYLISCRAVAEPGEPVGI 1121

Query: 1149 LASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            LA+QS+GEPSTQMTLNTFH AGRG++NVTLGIPRL+EI+  ASK  KTP++  PL
Sbjct: 1122 LAAQSIGEPSTQMTLNTFHFAGRGDVNVTLGIPRLREIVMTASKAAKTPIMIVPL 1176


>gi|154296469|ref|XP_001548665.1| hypothetical protein BC1G_12809 [Botryotinia fuckeliana B05.10]
          Length = 1774

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1277 (38%), Positives = 682/1277 (53%), Gaps = 161/1277 (12%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC    F CPGH GHIDL  PVY+P   + +  LL+  C +CH F+ SR+EV + V K
Sbjct: 62   CTTCNLSSFSCPGHAGHIDLPAPVYHPTFMDQVLRLLRSKCKYCHQFRMSRKEVNRYVCK 121

Query: 61   LELIIKGDIIAAK---SLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQ-- 115
            L LI +G + AA+   ++++  P E   P  SD  ++S    V  R      + LK    
Sbjct: 122  LRLIQQGLLSAAEEIENIEVAQPKEGEEPA-SDSDDESPIDSVIRRRLAFVKKELKAAKA 180

Query: 116  ---EWTSLQ---FAEAKLALLQ-FLKIETTK--CGNCKAKNPRISKPTFGWIHMNGMP-- 164
               EW   +    AEA+  +++ F+K  T    CGNC+  +P   K  +  I    +   
Sbjct: 181  SGWEWRREKHEGVAEARRVVVKSFMKAITAGRLCGNCQGISPTYRKDRYVKIFEKSLSVK 240

Query: 165  -HADIRANLIRGCNLGETFSGGEEEKDLGAS-SDVDAPETHSFNGTFPGTQDTAARRHQK 222
              A +     R  N  +   G ++++D     +D+D       +     + D        
Sbjct: 241  DKAKMAQGSYRAVNAVQLVHGEKKDRDGDEGIADIDLESNEDEDEGEGESLDVDGDVVMD 300

Query: 223  GSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHS-I 281
            GS A  S   +   L    +   +VK  +  L+E E E+ S + + +       A  + +
Sbjct: 301  GS-ATSSSKPRVAPLPQRYVDAMEVKASLTLLFEKEQEILSLVYNSRSSAKKPSAVKADM 359

Query: 282  FFLGVVLVPPIKFRLPSKGGD-SVMEHPQTVLLSKVLQA-----NIYLANAYVNQPDNAK 335
            FFL  +LVPP ++R  +K GD  + E  Q  L  ++L++      IYL     ++P  ++
Sbjct: 360  FFLQTLLVPPNRYRPEAKTGDGEIAEAQQNSLYKQILKSADTVNQIYLDIQNPDRPSQSQ 419

Query: 336  VIVAR--------WMNLQQSVNVLFDG-----KNAAGQRDMASGICQLLEKKEGLFRQKL 382
             +  R          ++Q +VN L D      + AAG+++   GI Q LEKKEGLFR+ +
Sbjct: 420  TLRKRDFFDLQEACCSMQDAVNSLIDRDRNPIQGAAGKKN-EDGIKQKLEKKEGLFRKNM 478

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
            MGKRVN+A RSVISPDP +  NEIG+PP FA +LTYPE VT  N  +++ ++ING +  P
Sbjct: 479  MGKRVNFAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFKEMQQAVINGVDKWP 538

Query: 443  GATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIV-QPGKDSDNEFEG---KMVYRHLQ 498
            GA    ++   +         I++  K    R A+  Q    S N   G   K VYRHL 
Sbjct: 539  GAAAIENENGQV---------INLRSKTQDERMALANQLLASSSNGASGARNKKVYRHLT 589

Query: 499  DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
            +GDVVL+NRQPTLHKPSIM H  RVL GEKT+RMHYANC+TYNADFDGDEMN+HFPQ EV
Sbjct: 590  NGDVVLMNRQPTLHKPSIMGHRARVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPQTEV 649

Query: 559  SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
            +RAEA  I + ++QY+  + G PLR LIQDHI  +  +  KDT+ +R  + QL+Y+    
Sbjct: 650  ARAEALQIADTDHQYLSATAGKPLRGLIQDHISVSVWMCNKDTYFDRATYQQLIYNCIRP 709

Query: 619  SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT-RGRPPFV 677
             SG        G+R++        +P  PAI KP   WTGKQVIT +L +IT     P  
Sbjct: 710  ESG-----HIVGERIV-------TVP--PAIIKPVARWTGKQVITTILKNITPLNCAPIS 755

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEA 737
            +    + P D    R+ AD +                                       
Sbjct: 756  LTGKTQTPAD----RWGADSE--------------------------------------- 772

Query: 738  EKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALS 795
                       E  +L    + + G++DKAQ   A  GL+H+V E+YG  TAG LLS L 
Sbjct: 773  -----------EGVVLFNGGEFITGILDKAQIGPAGGGLIHSVHEVYGPATAGKLLSILG 821

Query: 796  RLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG--AEIDP 853
            RL T +L M  FTCG+DDL +  + E+ R   L  + +IG  V  + + LED    E D 
Sbjct: 822  RLLTKYLHMRAFTCGMDDLRLTPEGEQTRIETLSDAGKIGLEVAAKYVSLEDQKPTETDQ 881

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
             +L + +E  MR   D+  A  D  M ++  K  S+S+ N  L +GL+K    N +  MT
Sbjct: 882  -ELLNRLEDVMR--DDSKQAGLDALMNARAGK-LSTSITNACLPQGLVKQFPHNQMQNMT 937

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN   IS +LGQQ LEG+RVP MVSGK+LP F P+D   RAGG+I++RFLTG
Sbjct: 938  VSGAKGSAVNANLISCNLGQQVLEGRRVPLMVSGKSLPCFKPFDTHIRAGGYIVNRFLTG 997

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            +RPQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E LK+ YD SVRD+DGS++QF 
Sbjct: 998  IRPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVEYDTSVRDSDGSMIQFI 1057

Query: 1034 YGEDGVDVHQTSFISKF--------DALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIY 1085
            YGEDG+DV +   ++ F          LA    G  R    F +K +   ++ R ++ + 
Sbjct: 1058 YGEDGLDVTKQKHLTDFKFLLQNLMSELAQLNYGDPRYETIFEEKEA---IIKRMKKALK 1114

Query: 1086 KKCSGQLD-----------------ASNAYIMELPDALKDNAEKFA-DKFLSNEMAKQDF 1127
               +  L+                  S  Y   L + +K N +    DK   + +  +  
Sbjct: 1115 HAKANDLNGPDPVLSEYNPGKYGYATSEKYFETLTNYMKTNPDGLVKDKDHPDGVGPRKA 1174

Query: 1128 LK-LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            L+ ++  K++ S+ +PGE VG++A QSVGEPSTQMTLNTFHLAG    NVTLGIPRL+EI
Sbjct: 1175 LEPVLVAKYLKSVVEPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHSSKNVTLGIPRLREI 1234

Query: 1187 LTIASKDIKTPVITCPL 1203
            +  AS  I TP +T  L
Sbjct: 1235 VMTASNHISTPSMTLTL 1251


>gi|50555960|ref|XP_505388.1| YALI0F13783p [Yarrowia lipolytica]
 gi|49651258|emb|CAG78195.1| YALI0F13783p [Yarrowia lipolytica CLIB122]
          Length = 1628

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/1280 (37%), Positives = 654/1280 (51%), Gaps = 206/1280 (16%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC      C GH GHI+L +PVYNPL F  L+ LL+  C FC HF+ S+ EV K   K
Sbjct: 64   CATCNLDNRFCQGHPGHIELPMPVYNPLFFTQLWVLLRAACRFCGHFRTSKAEVHKIYCK 123

Query: 61   LELIIKG--------------------DII---AAKSLDLDLPSESSNPEDSDVSNKSSC 97
            L L+  G                    D++   A+ S+D  +    S   +  ++     
Sbjct: 124  LRLLQYGLVGAAAEIDNIKSFMKESDDDVVQDDASASVDAAVMDRQSKFTEKTIAEALKE 183

Query: 98   SMVTPRGNYDNVRNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISKPTF 155
             + TP+G             T+    E K  +  F K  +  ++C  C   +P   K   
Sbjct: 184  GVTTPQG-----------VQTATVLEERKFVIRDFYKLLVAKSQCAQCGMHSPAYRKD-- 230

Query: 156  GWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDT 215
            G   +  MP             L E      + K L A + +    +   N  +P  +  
Sbjct: 231  GISKIFEMP-------------LSENKEKVNQSKGLRARNMI-RDRSDPIN-EYPLPKAG 275

Query: 216  AARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGK 275
            A  R+                     LL S+V++I+  L+E+E +L S +   +     +
Sbjct: 276  ANGRY---------------------LLSSEVRNILVTLFEHEQQLMSVLFRNRPNFDSQ 314

Query: 276  KAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN---------- 325
                 +FFL  ++VP  +FRLP+  G+ V+E     LL KVL   + + +          
Sbjct: 315  SISGDMFFLKNIVVPATRFRLPAARGEEVVESTTNTLLVKVLSTGMKIRDLNGTIAKMRL 374

Query: 326  AYVNQPDNAKVIVARWMN----LQQSVNVLFDGKNAAGQRDMAS----GICQLLEKKEGL 377
              +  P+  KV  A  MN    LQ  VN   D  +  G +   S    GI Q LEKKEGL
Sbjct: 375  EKIGLPER-KVTFAALMNAFVELQNDVNGFID--STKGNQKTGSVPVPGIKQTLEKKEGL 431

Query: 378  FRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIING 437
            FR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA++LTYPE VTP+NV +L  ++ING
Sbjct: 432  FRKNMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTPYNVAELSRAVING 491

Query: 438  AEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNE--FEGKMVYR 495
             ++ PGA     +        + KM    G  L+       Q    S N   F  K V+R
Sbjct: 492  PDVWPGAIQIQTE--------DGKMISLEGMTLEQRTATANQLLTPSANASGFTNKKVFR 543

Query: 496  HLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQ 555
            H+++ DVVL+NRQPTLHK S+M H VRVL  EKTLR+HYAN   YNADFDGDEMN+HFPQ
Sbjct: 544  HIRNNDVVLMNRQPTLHKASMMGHRVRVLPKEKTLRLHYANTGAYNADFDGDEMNMHFPQ 603

Query: 556  DEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSS 615
            +E +RAEA  + N ++QY+ P++G PLR LIQDHI +  LLT KDTF  R E+ QL+Y  
Sbjct: 604  NENARAEALLLANTDSQYLTPTSGKPLRGLIQDHISAGVLLTSKDTFFTRQEYQQLIY-- 661

Query: 616  GVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITR-GRP 674
                   G    + G    + R    +  + PA+ KP PLWTGKQVIT VL +IT  GRP
Sbjct: 662  -------GCLRPEDGHTADVGR----IHTVPPAVIKPVPLWTGKQVITTVLKNITPIGRP 710

Query: 675  PFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEE 734
                                              L+  NK+  +  G      EG     
Sbjct: 711  GL-------------------------------NLNAKNKVKNEYWG------EGS---- 729

Query: 735  KEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLS 792
                         +E  ++    +LV G++DK+Q+  ADYGLVH++ E+YG++ AG LLS
Sbjct: 730  -------------TENSVIFQNGELVCGILDKSQYGAADYGLVHSIHEIYGAHIAGKLLS 776

Query: 793  ALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID 852
             L RLFT ++   G TCG+DDL +  +    R   L G++++G +   E   L +  + +
Sbjct: 777  VLGRLFTRYVMNIGLTCGMDDLWLTAEGNNWRTTTLEGAKDVGVKAAAEVTNLPEDTDPE 836

Query: 853  PIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLM 912
              +L   +E+ +R   D  +   D    S++N  T +SV+++ +  G +K   +N +  M
Sbjct: 837  DPELLKRLEEILR--DDNKLGILDAISQSKVNAVT-TSVVSQCIPNGTMKRFPQNAMQRM 893

Query: 913  TTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLT 972
              SGAKGS VN  QI   LGQQ LEG+RVP MVSGKTLP+F P++    AGGF+  RF +
Sbjct: 894  ALSGAKGSNVNVSQIMCGLGQQALEGRRVPVMVSGKTLPAFKPFETDAIAGGFVASRFFS 953

Query: 973  GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQF 1032
            G+RPQEYYFHCMAGREGL+DTAVKTSRSGYLQRCLIK LE +  +YD +VRD+DG+++QF
Sbjct: 954  GIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLIKQLEGVHSTYDNTVRDSDGALIQF 1013

Query: 1033 CYGEDGVDVHQTSFISKFD-------ALAARERGRGRGRNKFCDKG-------------- 1071
             YG D VDV + S + +FD       A+  + +  G   N   D                
Sbjct: 1014 MYGGDSVDVIKESHLQQFDFCVENFQAMVHKHQPGGNVDNLDTDTAIEYAKKAKKKAKKA 1073

Query: 1072 ------SHTFVMGRNQEMIYKKCSGQLDAS-NAYIMELPDALKDNAEKFADKFLSNEMAK 1124
                      +   N        S +   S  AYI   PD            +    + +
Sbjct: 1074 TSDAELPEPTISLYNPAKYLGSVSEEFSNSLEAYIASRPDVFPPKKSGKKSTYADQGVTE 1133

Query: 1125 QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
            + F  L++ K++ S   PGE +G++ASQS+GEPSTQMTLNTFH AG G  NVTLGIPR++
Sbjct: 1134 KKFRSLMQLKYMQSTVNPGEALGIIASQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMR 1193

Query: 1185 EILTIASKDIKTPVITCPLL 1204
            EI+  ASK I TP ++ P+L
Sbjct: 1194 EIIMTASKSIMTPQMSLPVL 1213


>gi|393216084|gb|EJD01575.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Fomitiporia mediterranea MF3/22]
          Length = 1706

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1318 (37%), Positives = 680/1318 (51%), Gaps = 213/1318 (16%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC    F CPGHFGHI+L  P+++PL    +Y LLK  C FCH FK  R E+ K V K
Sbjct: 63   CATCRLTHFTCPGHFGHIELPSPIFHPLFMVSMYKLLKGTCTFCHRFKIRRTELVKYVAK 122

Query: 61   LELIIKGDIIAAKSLDLDLPSESSN---PEDSDVSNKSSCSMVTPRGNYDNVRNLK--PQ 115
            L L+  G +  A ++D   P+ S N    ED D +   S    + R        L+  P+
Sbjct: 123  LRLLDHGLLDYANAIDEMKPNVSQNEDGSEDEDTAADESLEEFSRRVKMTTQLFLRMHPE 182

Query: 116  EWTS-----LQFAEAKLALLQFLKIETTK-CGN--CKAKNPRISKPTFGWI----HMNGM 163
                     L F   K  + +FL     K C N  CKA    + K     I         
Sbjct: 183  RKRDDYKDGLVFQARKDVIAEFLATTALKRCQNNDCKAFAHSLRKEGHTKIVELDLTTKQ 242

Query: 164  PHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQK- 222
                I+ NL R   L +   G +  +                   F   +D A    ++ 
Sbjct: 243  KAQHIQMNLRRNNILHQERHGRQSTQYADEDVSGSEESEGEGEAVFSDEEDGAEPEEKRE 302

Query: 223  -----GSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKK- 276
                  SG V +   + + + +    P + +  + +L+ NE  +CS I       FG+  
Sbjct: 303  ALPKSASGKVKTMRGRNERIIT----PEECRAHLRRLFANEVSMCSLI-------FGRHG 351

Query: 277  ------------AGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL- 323
                        A   IFF+  +LV P +FR P+K GD++ EHP   LL+KVL  +  L 
Sbjct: 352  PFARVNTDRISPASADIFFMDCLLVSPTRFRPPAKMGDTLFEHPHNELLAKVLNTSYSLR 411

Query: 324  --ANAY--VNQPDNAKVIVAR----------WMNLQQSVNVLFDG-KNAAGQRD---MAS 365
              A+A    N+ D+    V+R           + LQ  VN   D  KN    R      +
Sbjct: 412  DQADALRAANEKDSTVDEVSRRRMLGRLIESLVQLQVDVNSFIDSSKNPQRMRQGKLPPA 471

Query: 366  GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPW 425
            G+ Q LEKKEGLFR  +MGKRVNY+ RSVISPD  +  NEIG+PP FA +LT+PE VT  
Sbjct: 472  GVKQNLEKKEGLFRMNMMGKRVNYSARSVISPDVNIDTNEIGVPPVFARKLTFPEPVTEH 531

Query: 426  NVVKLRDSIINGAEIHPGAT---------HYLDKLSTMRLPPNKKMRISIGRKLDTSRGA 476
            NV  +R+ + NG   +PGA+           L+K+       N + R ++  +L T +  
Sbjct: 532  NVHLMRELVTNGHHKYPGASIIELEDGTKQSLEKM-------NVEERRALANQLLTPQND 584

Query: 477  I---VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH 533
            +    + G  +      K VYRHL+DGDV+++NRQPTLHKPS+M H  RVL+GEKT+RMH
Sbjct: 585  LHGSSKMGLTTKTPAVNKKVYRHLRDGDVLILNRQPTLHKPSMMVHKARVLQGEKTIRMH 644

Query: 534  YANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSA 593
            YANC++YNADFDGDEMN+HFPQ+E++R+EA  I N +NQY+ P++G PLR LIQDH+V+ 
Sbjct: 645  YANCNSYNADFDGDEMNIHFPQNELARSEAMFIANTDNQYLVPTSGKPLRGLIQDHVVAG 704

Query: 594  ALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPE 653
              +T +DTF +R+E+ QLLY +            +P +     +++  +  L P IWKP 
Sbjct: 705  VWMTSRDTFFSREEYFQLLYGA-----------LRPEE-----QTDGRLRTLPPTIWKPV 748

Query: 654  PLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTN 713
            PLWTGKQ+I+ +L +IT      +                               L+   
Sbjct: 749  PLWTGKQIISTILLNITPSAAQGL------------------------------NLTSKA 778

Query: 714  KMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--AD 771
            K+  D  GK  E  EG+                     +++   +L+ G++DK+QF   D
Sbjct: 779  KVSGDLWGKGSE--EGR---------------------VVVMDGELLCGILDKSQFGATD 815

Query: 772  YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGS 831
            YGLVH+  ELYG++ AG LL  LSRL T FLQ   FTC +DDL +    + +R++ L   
Sbjct: 816  YGLVHSCYELYGADIAGRLLGILSRLLTKFLQHRAFTCRMDDLTLTALGDSQRRSLLQKG 875

Query: 832  EEIGKRVHLEALELEDGAEIDPIKLK----SEIEKAMRG------GGDAAVAYFDMKMTS 881
            + +G          ++GAE +   L     SE + A+R         DA +A  D+ +  
Sbjct: 876  KNLG----------QEGAEENFPSLATMPVSEKKGALRAFLRDVLRDDAKMAGLDVTVKK 925

Query: 882  QLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRV 941
            +L   T  S+ +  +  GL +    N + +MT SGAKGS VN QQIS  LGQQELEG+RV
Sbjct: 926  KLAGLT-KSIADACMPHGLSRKFPHNHMQMMTQSGAKGSAVNAQQISCALGQQELEGRRV 984

Query: 942  PRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSG 1001
            P M+SGKTLPSF  ++ A  AGG++  RFLTG++PQE+YFHCMAGREGL+DTAVKTSRSG
Sbjct: 985  PVMISGKTLPSFKAFETAAIAGGYVASRFLTGVKPQEFYFHCMAGREGLIDTAVKTSRSG 1044

Query: 1002 YLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERG-- 1059
            YLQRCLIK+LE +++ YD +VR +D SI+QF YG D +DV +   +++F+  A  ER   
Sbjct: 1045 YLQRCLIKHLEGIRVHYDNTVRASDSSILQFHYGGDCLDVTRQKHLTQFEFAARNERSLV 1104

Query: 1060 ----------------------------RGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQ 1091
                                        R   + K  D     +   RN     +K + +
Sbjct: 1105 ASLRTPSVDHFDDNEGAIKHMKDALKYLRKPKKGKKLDPAMSVYNPSRNIGATSEKFAQK 1164

Query: 1092 LDASNAYIMELPDALKDNAEKFADKFLSNE---MAKQDFLKLVKHKFVLSLAQPGEPVGL 1148
            ++    YI   PD +  +    A  +LS     ++ + F  L+  K++ S+  PGE VGL
Sbjct: 1165 VE---EYIKSNPDHMLKDKNAEAPLWLSKSRKGISHKMFRMLMNVKYMRSMVDPGEAVGL 1221

Query: 1149 LASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVG 1206
            LASQ VGEPSTQMTLNTFH AG G  NVTLGIPRL+EI+  AS   KTP +T  +  G
Sbjct: 1222 LASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASTKPKTPSMTMRVCAG 1279


>gi|164655658|ref|XP_001728958.1| hypothetical protein MGL_3952 [Malassezia globosa CBS 7966]
 gi|159102846|gb|EDP41744.1| hypothetical protein MGL_3952 [Malassezia globosa CBS 7966]
          Length = 1673

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1327 (37%), Positives = 696/1327 (52%), Gaps = 218/1327 (16%)

Query: 8    QFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRKLELIIKG 67
             F CPGHFGHI+L  PV++PL  N  Y+LL+  C +CHHFK S+  + K   +  L+  G
Sbjct: 3    HFECPGHFGHIELPAPVFHPLFMNHAYSLLRGTCLYCHHFKISKMALAKYTAQFHLLEYG 62

Query: 68   DIIAAK-----------SLDLDLPSESSNPEDSDVSNKSSCSMVT---PRGNYDN-VRNL 112
             +  A+           S  +D+  E +N +  D  ++    +     P    D+ +R +
Sbjct: 63   LVDEAERIANEQFRGPHSAGVDVVEEGANEDGDDDDDEPLAQLQNDNQPAETVDDFIRRI 122

Query: 113  KPQEWTSLQFAEAKLALLQ------------------FLK-IETTKCGNCKAKNPRISKP 153
            + Q    L     K  + +                  FLK I   +C  C+A NP + K 
Sbjct: 123  R-QAVHRLTAQARKCGIRRNADKGMATYSARRDLRNLFLKDIMRRRCERCQAINPTLRKD 181

Query: 154  TFGWI---HMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDA---PETHSFNG 207
             F  I    ++   HA   A  I+  N+    +     +D    +   A   P++ S   
Sbjct: 182  GFVKITERDLSARDHAIHEARGIKRQNVLMDRASTMTVRDTNGQTIRAAGNEPDSESTIE 241

Query: 208  TFPGTQDTAARRHQKGSG----AVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCS 263
            T    ++  AR+  K +G     VP+               S+ +  + +L+ NE E+CS
Sbjct: 242  TAITLKE--ARKLSKEAGDHTRVVPA---------------SECRANLRRLFANESEICS 284

Query: 264  FISDMQQQGFGKKAGHS--IFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVL---- 317
             I   +   FG     S  +FFL V+ V P +FR  S  GD   E+PQ  LL+K+L    
Sbjct: 285  LIFG-RHPMFGSTPAPSADVFFLEVICVTPTRFRPASVMGDQTFENPQNELLTKILNTAF 343

Query: 318  -------QANIYLANA---YVNQPDNAKVIVAR--W---------------MNLQQSVNV 350
                   +A +Y   A    +++ +  + I A+  W               M LQ SVN 
Sbjct: 344  FVRDCNERAQVYQTKANYPVLDEMNEQQAITAQKQWEMDRRAAMDQLLSAIMQLQVSVNC 403

Query: 351  LFDG-KNAAGQRD---MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEI 406
              D  KN A QR       G+ Q LEKKEGLFR+ +MGKRVN+A RSVISPD  +  NEI
Sbjct: 404  YMDSSKNPAPQRQGQAATPGVKQGLEKKEGLFRKHMMGKRVNFAARSVISPDVNIETNEI 463

Query: 407  GIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM--RI 464
            G+PP FA RLTYPE VT  N   +R  +ING +++PGA     +  T  L  N  +  R 
Sbjct: 464  GVPPVFAKRLTYPEPVTVHNYELMRQLVINGPDVYPGAHAVRGEDGTDTLLKNLSVEERT 523

Query: 465  SIGRKLDTSRGAIVQPGKDSDNEFEG-----------KMVYRHLQDGDVVLVNRQPTLHK 513
            ++  +L T +G   Q  + +   F G           K V RHL+ GD++++NRQPTLHK
Sbjct: 524  ALANQLLTPQG---QTSRQARGTFGGIGGTLRTPVINKQVLRHLRTGDILVMNRQPTLHK 580

Query: 514  PSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQY 573
            PS+MAH  RVL+GE+T+RMHYANC++YNADFDGDEMN+HFPQ +++RAE YNI N +NQY
Sbjct: 581  PSMMAHRARVLQGERTIRMHYANCNSYNADFDGDEMNMHFPQSQMARAECYNIANTDNQY 640

Query: 574  VRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRV 633
            + P++G+PLR LIQDH+V    +T K+T   RDE+ Q ++ +      +   T   G R+
Sbjct: 641  LVPTSGNPLRGLIQDHVVGGVWMTCKNTLYTRDEYQQFIFGA------IRPETYGQGGRI 694

Query: 634  LISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRF 693
                     LP  PAI KP+P WTGKQVI+ +L ++T   PP                  
Sbjct: 695  -------RTLP--PAILKPKPRWTGKQVISTILCNVT---PPHA-------------QGL 729

Query: 694  NADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLL 753
            N D ++                              + G +   E++K       EE ++
Sbjct: 730  NMDAKA------------------------------RVGAKYWGEQHK------EEEMVV 753

Query: 754  IYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
            +   +L+ GV+DK+Q   + YGLVH V E+YG+ +AG LLS  SRLFT++LQ + F+C +
Sbjct: 754  VRDGELLTGVLDKSQIGASAYGLVHAVYEIYGAESAGRLLSIFSRLFTMWLQHNAFSCRM 813

Query: 812  DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP---IKLKSEIEKAMRGGG 868
            DDL++  + +  R+  L      G    L  + L DG    P     L+  +E+ +R   
Sbjct: 814  DDLVLSSEGDATRQKILKDGATHGLEAALNNVGLGDGDSKAPETHRNLRVRLEEVLR--D 871

Query: 869  DAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQIS 928
            D  +A  D  M S  NK T SSVI+  +  GL +   +N + +M  SGAKGS VN   IS
Sbjct: 872  DNKLAALDAAMMSASNKLT-SSVISSCIPSGLWRVFPENNMQMMAVSGAKGSAVNVSSIS 930

Query: 929  SHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGRE 988
              LG Q LEG+RVP MVSGKTLPSF  ++ A RAGGF+  RFLTG+ PQEYYFHCMAGRE
Sbjct: 931  CLLGPQALEGRRVPVMVSGKTLPSFKAFETAARAGGFVAGRFLTGIAPQEYYFHCMAGRE 990

Query: 989  GLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS 1048
            GL+DTAVKTSRSGYLQRCLIK+LE + + YD +VR++DG ++QF YGED +DV ++ ++ 
Sbjct: 991  GLIDTAVKTSRSGYLQRCLIKHLEGISVQYDQTVRNSDGFVLQFHYGEDSLDVSKSKYLD 1050

Query: 1049 KFDALAARERGRGRGRNKFCDKGSHTF-----VMGRNQEMIYKKCS-----------GQL 1092
            +FD          R  N    + +         M R  +  YK              G +
Sbjct: 1051 RFDFTIQNFESYRRRYNPVQLESTMEVEKAPDYMKRALKKPYKYAPVMSVYSPARHFGSM 1110

Query: 1093 DASNA-----YIMELPDAL-----KDNAEKFADKFLSN-EMAKQDFLKLVKHKFVLSLAQ 1141
              + A     Y+ + P AL     KD+A +     L++ +++ + F  + K  +   L +
Sbjct: 1111 SETFAQKVEDYVSKNPRALLARKKKDSASEGVPMQLAHPKLSTEAFRAMTKVLYHRGLVE 1170

Query: 1142 PGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITC 1201
            PGE VGLLA+Q +GEPSTQMTLNTFH AG G  NVTLGIPRL+EI+  ASKDIKTPV+  
Sbjct: 1171 PGENVGLLAAQGIGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASKDIKTPVMRL 1230

Query: 1202 PLLVGKT 1208
            P+L G T
Sbjct: 1231 PILDGVT 1237


>gi|156047829|ref|XP_001589882.1| hypothetical protein SS1G_09604 [Sclerotinia sclerotiorum 1980]
 gi|154693999|gb|EDN93737.1| hypothetical protein SS1G_09604 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1705

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1288 (38%), Positives = 679/1288 (52%), Gaps = 183/1288 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC    F CPGH GHIDL  PVY+P   + +  LL+  C +CH FK SR+EV + V K
Sbjct: 62   CTTCNLSSFSCPGHAGHIDLPAPVYHPTFMDQVLRLLRSKCKYCHQFKMSRKEVNRYVCK 121

Query: 61   LELIIKGDIIAAKSLD---LDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQ-- 115
            L LI +G + AA+ +D   +  P E   P  SD   ++    V  R      + LK    
Sbjct: 122  LRLIQQGLLSAAEEIDNIEVAQPKEGEEPA-SDSDEETPVDSVIRRRLAFVKKELKAAKA 180

Query: 116  ---EWTSLQ---FAEAKLALLQ-FLKIETTK--CGNCKAKNPRISKPTFGWIHMNGMP-- 164
               EW   +    AEA+  +++ F+K  T    CGNC+  +P   K  +  I    +   
Sbjct: 181  SGWEWRREKHEGVAEARRVVVKSFMKAITAGRLCGNCQGISPTYRKDRYVKIFEKSLSVK 240

Query: 165  -HADIRANLIRGCNLGETFSGGEEEKD---------LGASSDVDAPETHSFNGTFPGTQD 214
              A +     R  N  +   G ++++D         L ++ D D  E  S +       D
Sbjct: 241  DKAKMAQGSYRAVNAVQLVHGEKKDRDGDEGIADIDLESNKDEDEGEGESLDVDGDVVMD 300

Query: 215  TAARRHQKGSGA-VPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI----SDMQ 269
              A    K   A +P  +          +   +VK  +  L+E E E+ S +    S ++
Sbjct: 301  GPATSSSKPRVAPLPQRY----------VDAMEVKASLTLLFEKEQEILSLVYNSRSSVK 350

Query: 270  QQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGD-SVMEHPQTVLLSKVLQA-----NIYL 323
            +    K     +FFL  +LVPP ++R  +K GD  + E  Q  L  ++L++      IYL
Sbjct: 351  KPSVVKA---DMFFLQTLLVPPNRYRPEAKTGDGEISEAQQNSLYKQILKSADTVNQIYL 407

Query: 324  ANAYVNQPDNAKVIVAR--------WMNLQQSVNVLFDG-----KNAAGQRDMASGICQL 370
                 ++P  +  +  R          ++Q +VN L D      + AAG+++   GI Q 
Sbjct: 408  DIQNPDRPSQSATLRKRDFFDLQEACCSMQDAVNSLIDRDRNPIQGAAGKKN-EDGIKQK 466

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            LEKKEGLFR+ +MGKRVN+A RSVISPDP +  NEIG+PP FA +LTYPE VT  N  ++
Sbjct: 467  LEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFKEM 526

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIV-QPGKDSDNEFE 489
            + ++ING +  PGA    ++   +         I++  K    R A+  Q    S N   
Sbjct: 527  QQAVINGVDKWPGAAAIENENGQV---------INLRSKTQDERMALANQLLASSSNGAS 577

Query: 490  G---KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDG 546
            G   K VYRHL +GDVVL+NRQPTLHKPSIM H  RVL GEKT+RMHYANC+TYNADFDG
Sbjct: 578  GARNKKVYRHLTNGDVVLMNRQPTLHKPSIMGHRARVLPGEKTIRMHYANCNTYNADFDG 637

Query: 547  DEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRD 606
            DEMN+HFPQ EV+RAEA  I + ++QY+  + G PLR LIQDHI  +  +  KDT+ +R 
Sbjct: 638  DEMNMHFPQTEVARAEALQIADTDHQYLSATAGKPLRGLIQDHISVSVWMCNKDTYFDRA 697

Query: 607  EFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL 666
             + QL+Y+     SG  S     G+R+           + PAI KP   WTGKQVIT +L
Sbjct: 698  TYQQLIYNCIRPESGHIS-----GERIQT---------VAPAIIKPVARWTGKQVITTIL 743

Query: 667  NHITR-GRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKE 725
             +IT     P  +    + P D    R+ AD +                           
Sbjct: 744  KNITPINCAPISLTGKTQTPAD----RWGADSE--------------------------- 772

Query: 726  VVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYG 783
                                   E  +L    + + G++DKAQ   A  GL+H+V E+YG
Sbjct: 773  -----------------------EGVVLFKGGEFITGILDKAQIGPAGGGLIHSVHEVYG 809

Query: 784  SNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL 843
              TAG LLS L RL T +L M  FTCG+DDL +  + E+ R   L  + +IG  V  + +
Sbjct: 810  PATAGKLLSILGRLLTKYLHMRAFTCGMDDLRLTPEGEKIRTETLMDAGKIGLEVAAKYV 869

Query: 844  ELEDGAEIDPIK-LKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLK 902
             LED    D  + L + +E  MR   D+  A  D  M ++  K  S+++ N  L +GL+K
Sbjct: 870  SLEDQKPTDTDQELLNRLEDVMR--DDSKQAGLDALMNARAGK-LSTAITNACLPQGLVK 926

Query: 903  PTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRA 962
                N +  MT SGAKGS VN   IS +LGQQ LEG+RVP MVSGK+LP F P++   RA
Sbjct: 927  QFPHNQMQNMTVSGAKGSAVNANLISCNLGQQVLEGRRVPLMVSGKSLPCFKPFETHVRA 986

Query: 963  GGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSV 1022
            GG+I++RFLTG+RPQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E LK+ YD SV
Sbjct: 987  GGYIVNRFLTGIRPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVEYDTSV 1046

Query: 1023 RDADGSIVQFCYGEDGVDVHQTSFISKF--------DALAARERGRGRGRNKFCDKGSHT 1074
            RD+DGS++QF YGEDG+DV +   ++ F          L+    G  R    F +K    
Sbjct: 1047 RDSDGSMIQFIYGEDGLDVTKQKHLTDFKFLLQNLMSELSQLNYGDPRYDTIFEEK---E 1103

Query: 1075 FVMGRNQEMIYKKCSGQLDA-----------------SNAYIMELPDALKDNAEKFA-DK 1116
             ++ R ++ +    +  L+                  S  Y   L + +K N +    DK
Sbjct: 1104 IIIKRMKKALKHVKANDLNGPDPVLSEYNPGKYGYATSEKYFETLTNYMKTNPDGLVKDK 1163

Query: 1117 FLSNEMAKQDFLK-LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMN 1175
               + +  +  L+ ++  K++ S+ +PGE VG++A QSVGEPSTQMTLNTFHLAG    N
Sbjct: 1164 EHPDGVGPRKALEPVLVAKYLKSVVEPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHSTKN 1223

Query: 1176 VTLGIPRLQEILTIASKDIKTPVITCPL 1203
            VTLGIPRL+EI+  AS  I TP +T  L
Sbjct: 1224 VTLGIPRLREIVMTASNHISTPSMTLTL 1251


>gi|406859187|gb|EKD12256.1| RNA polymerase Rpb1 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
          Length = 1707

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1286 (38%), Positives = 666/1286 (51%), Gaps = 175/1286 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC    F CPGH GHI+L VPVY+P+  + L  LL+  C +C++FK SR+EV + + K
Sbjct: 62   CTTCNLNTFACPGHVGHIELPVPVYHPIFMDQLLRLLRAKCAYCNYFKMSRKEVNRYICK 121

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNL-------- 112
            L LI  G +  A+ +D ++   +S   ++  S   +    +   N    RN         
Sbjct: 122  LRLIQHGLLGPAEEVD-NIEVSTSRETEAQASGSETEEEESAADNVIRQRNAFVKSSIKA 180

Query: 113  ---KPQEWTSLQ---FAEAKLALLQ-FLKI--ETTKCGNCKAKNPRISKPTFGWIHMNGM 163
                P EW   +    AEA+  +++ FLK       CGNC   +P+  K  +  I   GM
Sbjct: 181  AKASPWEWRREKNEGVAEARRMVIKTFLKNVGAGANCGNCSGISPKFRKDRYVKIFEKGM 240

Query: 164  P---HADIRANLIRGCNLGETFSGGEEEK---DLG-ASSDVDAPETHSFNGTFPGTQDTA 216
                 A +     +  N  +    G+++    D G A  D+ + E    +G         
Sbjct: 241  SLKDKAKVSQGNFKAVNAVQELQAGKKDNGDIDEGIADIDLSSNEDDEGDGDSLDVDGDV 300

Query: 217  ARRHQKGSGA-VPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQG-FG 274
                  G+ A   S   K  D +   +   +V+  +  L++ E ++ S + D +      
Sbjct: 301  VMGEASGTTAKSDSKVAKPSDKYINAI---EVRARLTLLFDKEQDILSLVYDSRSTTKNA 357

Query: 275  KKAGHSIFFLGVVLVPPIKFRLPS-KGGDSVMEHPQTVLLSKVLQANIYLANAYVN---- 329
                  +FFL  ++VPP KFR  +  G D V E PQ  L   +L++   +A  Y      
Sbjct: 358  TPVTADMFFLQTLMVPPNKFRPEAHTGDDEVAEAPQNRLYKDILKSCERVAEIYQAIHKQ 417

Query: 330  --------QPDNAKVIVARWMNLQQSVNVLFDG-----KNAAGQRDMASGICQLLEKKEG 376
                    +P +   +   W  LQ  VN L D      +  AGQ++   GI Q LEKKEG
Sbjct: 418  DAQEDSPYRPRDFYDLQEAWCQLQDVVNSLIDRDRNPVQGVAGQKN-EDGIKQKLEKKEG 476

Query: 377  LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
            LFR+ +MGKRVN+A RSVISPDP +  NEIG+PP FA +LTYPE VT  N   ++ ++IN
Sbjct: 477  LFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFKDMQQAVIN 536

Query: 437  GAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSD----NEFEGKM 492
            G +I PGA    ++   +         I++  K    R A+      S     N    K 
Sbjct: 537  GVDIWPGAAAIENENGQV---------INLRTKSQDERLALANQLLASSSSSANGARNKK 587

Query: 493  VYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVH 552
            V+RHL +GDVVL+NRQPTLHKPSIM H  RVL GEKTLRMHYANC+TYNADFDGDEMN+H
Sbjct: 588  VHRHLTNGDVVLMNRQPTLHKPSIMGHRARVLPGEKTLRMHYANCNTYNADFDGDEMNMH 647

Query: 553  FPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLL 612
            FPQ E++RAEA  I + ++QY+  ++G PLR LIQDHI  +  +  +DTF +R  + QL+
Sbjct: 648  FPQTELARAEALQIADTDHQYLVATSGKPLRGLIQDHISVSVWMCNRDTFFDRATYQQLI 707

Query: 613  YSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRG 672
            Y+     SG             I     E +P  PAI KP P WTGKQVIT +L +I   
Sbjct: 708  YNCLRPESG------------HIVSDRIETVP--PAIIKPFPRWTGKQVITTILKNI--- 750

Query: 673  RPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMH--KDKSGKKKEVVEGK 730
                                         K  D G L+ T K     D+ GK  E     
Sbjct: 751  -----------------------------KPIDCGPLTLTGKSQTPADRWGKNSE----- 776

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAG 788
                              E  +LI   + + G++DK+Q   +  G VH + E YG   AG
Sbjct: 777  ------------------EGVVLIKGGEFITGILDKSQIGPSSGGFVHAIHEAYGPTAAG 818

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALEL--E 846
             LLSAL RL T FL M  FTCGVDDL +    E  R+  L  ++++G +V  + + L  +
Sbjct: 819  KLLSALGRLLTKFLHMRAFTCGVDDLRLTAQGEEMRRKELAAAKDLGLKVAAKYVTLSAD 878

Query: 847  DGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
            +  + DP +L + +E  MR   D      D+ M ++ +   SS++    L  GL+K   K
Sbjct: 879  NRTDTDP-ELLNRLEVVMR--DDTKQQGLDI-MMNKRSGELSSAITAACLPAGLVKQFPK 934

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
            N +  MT SGAKGS VN   IS +LGQQ LEG+RVP MVSGK+LP F P++   RAGG+I
Sbjct: 935  NQMQNMTVSGAKGSAVNANLISCNLGQQVLEGRRVPIMVSGKSLPCFRPFETHMRAGGYI 994

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
            ++RFLTG+RPQE+YFH MAGREGL+DTAVKTSRSGYLQRCLIK +E LK+ YD SVRD+D
Sbjct: 995  VNRFLTGIRPQEFYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVEYDTSVRDSD 1054

Query: 1027 GSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYK 1086
            GS+VQF YGEDG+DV +   +  F  L           N   ++    F    ++E I K
Sbjct: 1055 GSMVQFLYGEDGLDVTKQKHLMDFKFLLQNLESELSQLNYGDERYDTIF---NDKEAILK 1111

Query: 1087 KCSGQLDASNAYIMELPD-ALKD---------NAEKFADKFLSNEMAKQDFLKLVK---- 1132
            +    L  +NA     PD  L D          +EKF D     +  K D   +VK    
Sbjct: 1112 RMKKALKHANANNPNGPDPVLADYNPGKYGYATSEKFFDAL--TQYLKTDPDAMVKTKEN 1169

Query: 1133 ---------------HKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVT 1177
                            K++ S+A+PGE VG++A QS+GEPSTQMTLNTFHLAG    NVT
Sbjct: 1170 PAGVGVRKALEAVLVAKYLKSVAEPGEAVGIVAGQSIGEPSTQMTLNTFHLAGHSAKNVT 1229

Query: 1178 LGIPRLQEILTIASKDIKTPVITCPL 1203
            LGIPRL+EI+  AS  I TP +T  L
Sbjct: 1230 LGIPRLREIVMTASNHISTPSMTLRL 1255


>gi|238878529|gb|EEQ42167.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Candida albicans
            WO-1]
          Length = 1577

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1264 (38%), Positives = 657/1264 (51%), Gaps = 207/1264 (16%)

Query: 28   LLFNLLYTLLKRICFFCHHFKASRREVEKCVRKLELIIKGDIIAAKSLD----------- 76
            + FN LY  L+  C +CH FK ++ EV     KL LI  G ++    LD           
Sbjct: 1    MFFNQLYIFLRSACLYCHKFKLNQLEVHNFECKLHLIQYGLLLECVELDNIMAKSSKSSS 60

Query: 77   -LDLPSESSNPEDS--DVSNKSSCSMVTPRGNY----------DNVRNLKPQEWTSLQFA 123
             +D+  E ++ E+    V  KS   ++  R  +          D   N K     S+   
Sbjct: 61   VIDVDGEDNDDEEGGGSVDEKSKKDLMKRRELFVKDAIESALKDGRTNHKGVVTASVS-E 119

Query: 124  EAKLALLQFLK--IETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGET 181
            E K  + +F K  +   KC NC   +P   K  F  I  N +    I  N ++G    + 
Sbjct: 120  ERKATIHEFYKRLLSRPKCTNCGMYSPGFRKDGFTKIFENSLTDKQITNNRVKGLQRPDM 179

Query: 182  F-----SGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKD 236
                  +G      +GA+SD+            P        +H+ GS  V         
Sbjct: 180  IKKNAGNGNGNSSSIGAASDL------------PNI------KHKGGSKYV--------- 212

Query: 237  LFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRL 296
                  L ++V++I+  L+  E  +   +   +       +G  +FF   VLVPP +FRL
Sbjct: 213  ------LSTEVRNILRSLFHKEQAILQKVFHSRPYQHDPISG-DLFFKQSVLVPPTRFRL 265

Query: 297  PSKGGDSVMEHPQTVLLSKVLQANIYL-------ANAYVNQ--PDNAKVIVARWMN---- 343
            PSK GD + E+ Q  LLS +++ ++ +        N Y  +   ++ K+I  R MN    
Sbjct: 266  PSKLGDEIHENAQNELLSNIIKTSVLIRDLNERITNMYKEKISGEDKKIIFNRLMNAFVT 325

Query: 344  LQQSVNVLFDG---KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
            LQ  VN   D    +NA   +    GI Q LEKKEGLFR+ +MGKRVNYA RSVISPDP 
Sbjct: 326  LQNDVNAFIDSTKNQNAPAGKIPNPGIKQALEKKEGLFRKHMMGKRVNYAARSVISPDPN 385

Query: 401  LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY------LDKLSTM 454
            L  NEIG+PP FA +LTYPE VT +N  +LR ++ING +  PGA         L  L  M
Sbjct: 386  LETNEIGVPPVFAKKLTYPEPVTSYNASELRQAVINGPDTWPGAIQVQNEDGSLISLIGM 445

Query: 455  RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKP 514
             L    + R +I  +L T  G          N   GK VYRH+++ DVV++NRQPTLHK 
Sbjct: 446  TL----EQRKAIANQLLTPNGG---------NSVVGKKVYRHIKNNDVVIMNRQPTLHKA 492

Query: 515  SIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYV 574
            S+M H VRVL GEKTLR+HYAN   YNADFDGDEMN+HFPQ+E +RAEA N+ N +NQY+
Sbjct: 493  SMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALNLANTDNQYL 552

Query: 575  RPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVL 634
             P++G PLR LIQDHI +   LT KDTF NR+ + QL+Y         G    + G    
Sbjct: 553  TPTSGSPLRGLIQDHISAGVWLTNKDTFFNRETYQQLIY---------GCIRPEDGH--- 600

Query: 635  ISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFN 694
               S+  ++ + PAI+KPE LWTGKQVIT VL +I     P V                 
Sbjct: 601  --TSKNRIVTVPPAIYKPEMLWTGKQVITTVLLNIKPDNVPGV----------------- 641

Query: 695  ADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLI 754
                          L   NK+  D   +                   S E E      +I
Sbjct: 642  -------------NLISKNKIKSDYWSE------------------SSTENE------VI 664

Query: 755  YKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
            +KN +L+ G++DK+Q+  + +G+VH++ E+YG   AG  LS L RLFT ++ M  FTCG+
Sbjct: 665  FKNGELLSGILDKSQYGASQFGIVHSLHEVYGPTVAGKALSVLGRLFTNYIMMTAFTCGM 724

Query: 812  DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAA 871
            DDL +  +    RK+ L  S +IG+    E   L++  + +  +L   +E+ +R   D  
Sbjct: 725  DDLRLTDEGNTWRKDILKQSVDIGRVAATEVTNLDEDTKNNNKELLRRLEEILR--DDNK 782

Query: 872  VAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHL 931
            +   D    S++N  T S V+++ + +G +K    N +  M  SGAKGS VN  QI   L
Sbjct: 783  LGILDAITQSKVNAIT-SQVVSKCVPDGTMKRFPYNSMQAMALSGAKGSNVNVSQIMCLL 841

Query: 932  GQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLV 991
            GQQ LEG+RVP MVSGKTLPSF P++   RAGG+I  RF +G+RPQEYYFHCMAGREGL+
Sbjct: 842  GQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKQRFYSGIRPQEYYFHCMAGREGLI 901

Query: 992  DTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKF- 1050
            DTAVKTSRSGYLQRCL K LE + +SYD SVRDADG+++QF YG D VD  + S +++F 
Sbjct: 902  DTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVRDADGTLIQFLYGGDAVDTTKQSHMNQFK 961

Query: 1051 ------DALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAY-----I 1099
                  DAL  +        N   D  + ++     + +  +K     D    Y     +
Sbjct: 962  FCVDNYDALLTKYNPGDMTENIDTDL-ALSYSKKVRKSLKKQKDVPHYDQVIKYDPVLNV 1020

Query: 1100 MELPDALKDNAEKFADKF------------LSNEMAK-------QDFLKLVKHKFVLSLA 1140
                  L   +EKF +K              S E AK       + F  L++ K++ SL 
Sbjct: 1021 YNPAKYLGSVSEKFQEKLDTYVSKNPTIFAQSKEEAKSTGKITEKKFRALMQLKYMRSLI 1080

Query: 1141 QPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
             PGE VG++ASQS+GEPSTQMTLNTFH AG G  NVTLGIPR++EI+  AS  IKTP +T
Sbjct: 1081 NPGEAVGIIASQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASASIKTPQMT 1140

Query: 1201 CPLL 1204
             P+L
Sbjct: 1141 LPIL 1144


>gi|344231880|gb|EGV63759.1| alpha subunit of RNA polymerase I [Candida tenuis ATCC 10573]
          Length = 1625

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/1273 (36%), Positives = 667/1273 (52%), Gaps = 189/1273 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG     CPGH GHI+L + VYNPL FN L+  L+  C +CHHFK +  EV +   K
Sbjct: 62   CTTCGLDDRFCPGHQGHIELPIAVYNPLFFNQLFLFLRSSCLYCHHFKLNSLEVHRFTCK 121

Query: 61   LELIIKGDIIAAKSLDLDL-----PSESSNPEDSDVSNKSSCSMVTPRGNYDNV------ 109
            L LI  G ++    LD  +       +    E  +     + S + P+   D +      
Sbjct: 122  LRLIQYGLLLECTELDNMMIKGKGELDDEAEEGEEEDGFKTKSAIDPKAKKDLIARRELF 181

Query: 110  ------------RNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISKPTF 155
                        R  +    TS    E KL + +F K  +   +C NC   +P   K  F
Sbjct: 182  VDTVIATALSEGRTSEGGVTTSTVGEERKLTIHEFYKRLLSRPRCDNCGMYSPSFRKDGF 241

Query: 156  GWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDT 215
              +  N +    +  N +RG    +    G                T S N + P     
Sbjct: 242  TKLFENSLRDKQVANNRVRGLVRPDMLRNG---------------STTSKNDSMPNI--- 283

Query: 216  AARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGK 275
               +H+ GS  +               L ++VK+I+  +++ E  + + + + +     K
Sbjct: 284  ---KHKGGSKYI---------------LSTEVKNILVSVFKKEKNVLNKVFNARPNP-SK 324

Query: 276  KAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN-----AYVNQ 330
            +    +FFL  ++VPP +FRLPSK GD V E+ Q  LLS +L+  + + +       V +
Sbjct: 325  EVSAEMFFLTALVVPPTRFRLPSKLGDEVHENAQNELLSNILKTCLLIRDLNDQITSVTK 384

Query: 331  P----DNAKVIVARWMN----LQQSVNVLFDG---KNAAGQRDMASGICQLLEKKEGLFR 379
                 D+ K++  R MN    +Q  VN   D    +NA   +    G+ Q LEKKEGLFR
Sbjct: 385  DKITIDDKKILFNRLMNSFVTIQNDVNAFIDSTKNQNAPAGKMPVPGVKQALEKKEGLFR 444

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
            + +MGKRVN+A RSVISPDP L  NEIG+PP FA +LTYPE VT +N+ +LR ++ING +
Sbjct: 445  KHMMGKRVNFAARSVISPDPMLETNEIGVPPVFAKKLTYPEPVTAYNINELRKAVINGPD 504

Query: 440  IHPGATHYLDKLSTMRLPPNKKMRIS-IGRKLDTSR---GAIVQPGKDSDNEFEGKMVYR 495
              PGA    ++  ++         IS IG  L+  R     ++ P   S  E   K V R
Sbjct: 505  KWPGAVQVQNEDGSL---------ISLIGMNLEQRRTVANQLLTPSNGSTGEV-NKKVLR 554

Query: 496  HLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQ 555
            H+++ DVVL+NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFDGDEMN+HFPQ
Sbjct: 555  HIKNKDVVLMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQ 614

Query: 556  DEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSS 615
             E ++AEA N+ N ++QY+ P++G PLR LIQDHI +   LT KDTF  R+ + QL+Y  
Sbjct: 615  SENAKAEALNLANTDSQYLTPTSGSPLRGLIQDHISAGVWLTSKDTFFTRETYQQLIY-- 672

Query: 616  GVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPP 675
                   G    + G    I+ +    LP  P I+KPEPLWTGKQ+I+ +L +I     P
Sbjct: 673  -------GCIRPEDGH---ITMTRIRTLP--PTIFKPEPLWTGKQIISTILLNIKPADVP 720

Query: 676  FVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEK 735
             V                               L   NK+  +  G              
Sbjct: 721  GV------------------------------NLISKNKIKSEYWG-------------- 736

Query: 736  EAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLS 792
                      E S E  +I+KN +L+ G++DK+Q+  + +G+VH++ E+YG   AG  LS
Sbjct: 737  ----------EGSTENEVIFKNGELLCGILDKSQYGASQFGIVHSLHEVYGPTIAGKSLS 786

Query: 793  ALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID 852
             L RLFT ++ M  FTCG+DDL +  +  + R + L  S ++G+    E   L     + 
Sbjct: 787  ILGRLFTNYIMMTAFTCGMDDLRLTAEGNQWRNDILKQSVDVGRLAANEVTNLPSDTSVT 846

Query: 853  PIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLM 912
              +L   +E+ +R    + +   D   +S+ N  T S V+++ + +G +K    N +  M
Sbjct: 847  DKELLKRLEEILRDDNKSGI--LDAVTSSKANAIT-SQVVSKCVPDGTMKRFPYNSMQAM 903

Query: 913  TTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLT 972
              SGAKGS VN  QI   LGQQ LEG+RVP MVSGK+LP F P++   RAGG+I  RF +
Sbjct: 904  ALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKSLPCFKPYETDARAGGYIKQRFYS 963

Query: 973  GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQF 1032
            G+RPQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + +SYD SVRD DG+++QF
Sbjct: 964  GIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVRDGDGTLIQF 1023

Query: 1033 CYGEDGVDVHQTSFISKFD-ALAARERGRGRGRNKFCDKGSHTFVMG------------- 1078
             YG D VD  + S +++F   L   +    + + +F D  +    +              
Sbjct: 1024 LYGGDAVDTTKQSHMNEFKFCLENYDSLLKKYQPEFIDNLNTDDALDYMKKYKKSIKKIN 1083

Query: 1079 ----RNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKF----ADKFLSNEMAKQDFLKL 1130
                  Q + Y       + +  Y+  + +  +++ EKF     + F  +++ K+ F  L
Sbjct: 1084 DLPHYEQTLKYDPTISVYNPAK-YLGAVSENFQNSLEKFISDNKELFKKDKVGKEKFKAL 1142

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ K++ SL  PGE VG++ASQSVGEPSTQMTLNTFH AG G  NVTLGIPR++EI+  A
Sbjct: 1143 MQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTA 1202

Query: 1191 SKDIKTPVITCPL 1203
            S  I TP +T PL
Sbjct: 1203 SSSIATPQMTMPL 1215


>gi|358380112|gb|EHK17791.1| hypothetical protein TRIVIDRAFT_57534 [Trichoderma virens Gv29-8]
          Length = 1640

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1273 (38%), Positives = 664/1273 (52%), Gaps = 200/1273 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC   Q  CPGH GHI L VPVY+P+  +  Y LL+  C +C  F+   +++ K   +
Sbjct: 62   CATCNLNQSSCPGHPGHIQLPVPVYHPVFLDQAYRLLRATCVYCKGFRLPPKDLHKYTCQ 121

Query: 61   LELIIKGDI--------IAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRN- 111
            L L+  G I        I    L +++  E+    DS+  +++S +    R     VR  
Sbjct: 122  LRLLHHGLINEAHMVASIGENDLAIEI-KEALGEGDSEAEDENSGADGVTRQREKYVRQC 180

Query: 112  -----LKPQEWTSLQFAEAKLALLQFLK------IETTKCGNCKAKNPRISKPTFGWIHM 160
                 LK  E    +   A     + +K      I+   C +C   +P   K  F  I  
Sbjct: 181  LQGIKLKRGEVKRGKHEGANEMRREIIKEFLAEIIKKRVCSSCGGISPTYRKDRFVKIFE 240

Query: 161  NGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRH 220
              +   +      +    G+  +    + ++G  +D D     S +  +  + +  AR  
Sbjct: 241  KSLSTKEKAKMAQKALKWGDAMT---RDIEMGDVNDDDFASEES-SQRYISSMEVRARLE 296

Query: 221  QKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHS 280
            +         F+K++DL S   L  + K   +                       K    
Sbjct: 297  EL--------FRKEQDLLS---LVYNAKPPTQS--------------------SPKVTPD 325

Query: 281  IFFLGVVLVPPIKFRLPSKGGDS-VMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
            +FF+ VVLVPP +FR  ++ GDS + E  Q  L   +L     +A  Y  +  +   +  
Sbjct: 326  MFFITVVLVPPNRFRPEARTGDSQISEAQQNALYKNILGCCSSIARVYNEKRSDITSMHQ 385

Query: 340  RWMNLQQSVNVLFD-GKN----AAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSV 394
             W  LQ +VN L D  KN    AA  R+   GI QLLEKKEGLFR+ +MGKRVNYA RSV
Sbjct: 386  AWTELQDAVNSLIDKNKNPVQGAAAARN-EDGIKQLLEKKEGLFRKNMMGKRVNYAARSV 444

Query: 395  ISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM 454
            ISPDP +  NEIG+PP FA +LTYPE VT  N   ++ ++ING +  PGA    ++   +
Sbjct: 445  ISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFKDMQQAVINGVDKWPGAFAIENENGQI 504

Query: 455  RLPPNKKM--RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLH 512
                NK +  RIS+  +L       + P   S    + K V+RHL +GDVVL+NRQPTLH
Sbjct: 505  VNLRNKSVDDRISLANQL-------LAPTNSSAARMKNKKVHRHLTNGDVVLMNRQPTLH 557

Query: 513  KPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQ 572
            KPSIM H VRVL GEKT+RMHYANC+TYNADFDGDEMN+HFPQ+EV+R EA  I + ++Q
Sbjct: 558  KPSIMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPQNEVARVEALQIADTDHQ 617

Query: 573  YVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQR 632
            Y+  + G PLR LIQDHI  +  L  +D F  R +F QL+YS+    SG        G+R
Sbjct: 618  YLSGTAGKPLRGLIQDHISVSVALCSRDAFFTRSDFQQLIYSALRPESG-----HILGER 672

Query: 633  VLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 692
            + +S          PAI KP P WTGKQVI+ +L +I   RPP                 
Sbjct: 673  IQLSP---------PAIIKPVPRWTGKQVISTILANI---RPP----------------- 703

Query: 693  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL 752
                       N  G   K N   K                   AE+  +  +E S   +
Sbjct: 704  -----------NCGGLTMKENAQIK-------------------AEQWGTSSEEGS---V 730

Query: 753  LIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
            LI   + + G++DK+Q   +  GL+H V E+YG + AG LLS+L RL T +L M  F+CG
Sbjct: 731  LIQDGEFITGILDKSQIGPSSSGLIHAVHEIYGPSVAGKLLSSLGRLLTRYLSMRAFSCG 790

Query: 811  VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
            +DDL +  + E  R+  L  ++++G  +    + L    +     L   +E+ MR   D+
Sbjct: 791  MDDLRLTAEGEAARRRELVAADKMGLEIASNYVSLGKQEDAQNPLLLERLEEVMR--DDS 848

Query: 871  AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
                 D+ M +Q  K  + +V   L+  GL K   KN + +MTTSGAKGS+VN   IS +
Sbjct: 849  KQEGLDLLM-NQGTKDITDAVQKALIPNGLEKNFPKNQMQVMTTSGAKGSRVNASLISCN 907

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            LGQQ LEG+RVP MVSGKTLPSF P+D   RAGG+I++RFLTG+RPQEYYFH MAGREGL
Sbjct: 908  LGQQVLEGRRVPVMVSGKTLPSFRPYDTNIRAGGYIVNRFLTGIRPQEYYFHHMAGREGL 967

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS-- 1048
            +DTAVKTSRSGYLQRC+IK +E L +SYD SVRDADGS++QF YGEDG+DV + +++   
Sbjct: 968  IDTAVKTSRSGYLQRCIIKGMEGLTVSYDTSVRDADGSLIQFLYGEDGLDVTKQNYLKDF 1027

Query: 1049 --------------KFDALAARERGRGR--------------------GRNKFC---DKG 1071
                          K+D       G  R                    G++      D  
Sbjct: 1028 RFILQNVTSEAAQLKYDPKVGERLGANRQAFQKYMKSAVRHAKLNDRKGKDPLTASFDPA 1087

Query: 1072 SHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDAL--KDNAEKFADKFLSNEMA--KQDF 1127
            ++ F      E  Y       +A  AY+ + PD L  + N++   DK   N++A  K++ 
Sbjct: 1088 TNAFA---TSETFY-------EAMTAYLKDNPDGLVREKNSQ---DKAPLNQVALNKKNA 1134

Query: 1128 LKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 1187
              L   K++ SL +PGE VG++A QS+GEPSTQMTLNTFHLAG    NVTLGIPRL+EIL
Sbjct: 1135 EMLFAMKYLRSLVEPGEAVGIVAGQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIL 1194

Query: 1188 TIASKDIKTPVIT 1200
              ASK I TP +T
Sbjct: 1195 MTASKTISTPAMT 1207


>gi|320163230|gb|EFW40129.1| RNA polymerase I largest subunit [Capsaspora owczarzaki ATCC 30864]
          Length = 1900

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1089 (40%), Positives = 589/1089 (54%), Gaps = 194/1089 (17%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSI--------FFLGVVLVPPIK 293
            L P  V+D +   W+ E  L + I       +  KAG ++        FFL VV V P +
Sbjct: 429  LHPLQVRDHLYSTWQREPHLVNLIYG----SYSSKAGVALTRSGTANCFFLDVVPVAPSR 484

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN--------------AYVNQPDNAKV--- 336
            FR P++  D + E+PQ + L  +L+ ++ L                A ++Q D+      
Sbjct: 485  FRPPARMQDQLFENPQNIYLGNILRQSLQLIEYRSVKERLLAGEDLASIDQDDDQAETTG 544

Query: 337  -------------IVARWMNLQQSVNVLFDG--KNAAGQRDMASGICQLLEKKEGLFRQK 381
                         +V  W+ LQ  VN L D     A    +  +GI Q LEKKEGLFR+ 
Sbjct: 545  TGGPKSRAGDIVRLVNTWIALQGEVNSLMDSTLNTAVKGGNPPAGIRQTLEKKEGLFRKH 604

Query: 382  LMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIH 441
            +MGKRVNYA RSVISPD Y+   EIGIP  FA +LTYPE VTPWN  +LRD++ING E+H
Sbjct: 605  MMGKRVNYAARSVISPDVYIDSAEIGIPMVFAKKLTYPEPVTPWNFQELRDAVINGPEVH 664

Query: 442  PGATHYLDKLSTMRLPPN--KKMRISIGRKLDTSRGAIVQPGKDSDNEF----------- 488
            PGATH  +   T+    N  +  R ++   L T    ++     +  +            
Sbjct: 665  PGATHVQNADGTLSALANMDQDKRTALANLLLTPSSQLISSTTSTAAQVAELVQAASSGL 724

Query: 489  -------------------------EGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRV 523
                                      GK V+RH+++GDV+LVNRQPTLHKPSIMAH+ R+
Sbjct: 725  SAASSGAAPSSAATALAANNAALSVSGKKVFRHVRNGDVLLVNRQPTLHKPSIMAHIARI 784

Query: 524  LKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLR 583
            L GEKTLR+HY NC+TYNADFDGDEMNVH PQ E+ RAE Y I NA++QY+ P++G PLR
Sbjct: 785  LPGEKTLRLHYCNCNTYNADFDGDEMNVHLPQSELPRAEGYFIANADSQYLVPTSGRPLR 844

Query: 584  SLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS----- 638
             LIQDH++  A +T +D F  + E+ QL+Y+  +   G     G  G  V +S S     
Sbjct: 845  GLIQDHVIGGAKMTMRDRFFEQSEYMQLVYAC-LPEGGTARHGGHGG--VALSSSSTTVA 901

Query: 639  -----EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRF 693
                 +Q +  L P I KP+ LW+GKQ+I+ +L ++TRGR P                  
Sbjct: 902  AMGVGKQAITMLTPCIIKPKALWSGKQIISTLLINLTRGRVPL----------------- 944

Query: 694  NADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLL 753
                           L   +K+     GK                         SEE  +
Sbjct: 945  --------------NLKSASKVPASAWGKN------------------------SEEGDV 966

Query: 754  IYKND-LVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
            I+++  ++ G++DK+QF  + +GLVH   ELYG++ AG LL+A SRLFT+FLQ HGFT G
Sbjct: 967  IFRDSHMMTGILDKSQFGASAFGLVHACYELYGADVAGRLLTAFSRLFTIFLQYHGFTIG 1026

Query: 811  VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
            V+DL++  D +  R   L  +  +G       +   D ++ +   LKS + +  R   D 
Sbjct: 1027 VEDLVLTPDADAARVKLLRAATNVGAEETARFVGQADSSDTE--LLKSNVLRIFRS--DE 1082

Query: 871  AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
              A  D  M ++LNK TS  VI+  + +G      +N +SLM  SGAKGSKVN  QISS 
Sbjct: 1083 QSAALDSVMKTRLNKLTSD-VISACIPDGQRVAFPENNLSLMINSGAKGSKVNHSQISSL 1141

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            LGQQELEG+RVP MVSGKTLPSF  +D + RAGG++ DRFLTG+RPQEY+FHCMAGREGL
Sbjct: 1142 LGQQELEGRRVPVMVSGKTLPSFQAFDASARAGGYVTDRFLTGIRPQEYFFHCMAGREGL 1201

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKF 1050
            +DTAVKTSRSGYLQRCLIK+LE L+++YD +VRD+DGS+VQF YGED +D  +T F+ +F
Sbjct: 1202 IDTAVKTSRSGYLQRCLIKHLEGLRVNYDMTVRDSDGSVVQFHYGEDSLDPTKTIFLDQF 1261

Query: 1051 DALAAR---ERGRGRGRNKFC----DKGSHTFVMGRNQEMIYKKCSGQLDAS---NAYIM 1100
              +A     +  +   RN        KG         +   Y     QL       A   
Sbjct: 1262 SFVAQNYNAQEAKLNSRNALSILDSSKGPRRMAKALEKPDRYAPVLSQLHPGLHLGAVSE 1321

Query: 1101 ELPDALKDNAEKFADKFLS--------------------------NEMAKQDFLKLVKHK 1134
            +   +L++  EK  DK L                            ++ +     L+  K
Sbjct: 1322 KFARSLEEYIEKNPDKLLQAAEEETAVVPASSKKGKKHQVAQPKRQKVPEASLRALMYTK 1381

Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
            +V SL +PGE VG++A QS+GEPSTQMTLNTFH AG G MNVTLGIPRL+EIL  AS  I
Sbjct: 1382 YVNSLVEPGEAVGVVAGQSIGEPSTQMTLNTFHFAGLGAMNVTLGIPRLREILMTASPHI 1441

Query: 1195 KTPVITCPL 1203
            KTP +T PL
Sbjct: 1442 KTPHMTLPL 1450



 Score = 70.1 bits (170), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TC      CPGH GHI+L +PVYNP+ F  ++ LL+ IC  C  FK     +     +
Sbjct: 77  CRTCNLASTHCPGHVGHIELALPVYNPIFFKDMFQLLRCICLNCGAFKGVPVTLRLAEVR 136

Query: 61  LELIIKGDIIAAKSLD-LDLPSESSNPED 88
           L+L+  G +I A   + L  PS   +P++
Sbjct: 137 LQLLEHGLLIPAMDAEFLTTPSAQFSPQE 165


>gi|407928328|gb|EKG21187.1| RNA polymerase alpha subunit [Macrophomina phaseolina MS6]
          Length = 1711

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/1284 (37%), Positives = 676/1284 (52%), Gaps = 179/1284 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC   ++ CPGH GHI+L VP Y+P   + L  LL+  C +CH  K S+        K
Sbjct: 68   CATCNLDEYRCPGHAGHIELPVPAYHPTFMDQLLRLLRAQCQYCHGLKMSKVITNLYSCK 127

Query: 61   LELIIKGDIIAAKSLD-LDLPSESSNPE-----DSDVSNKSSCSMVTPRGNYDNVRNLK- 113
            L LI  G +  A  +D L++P    + E     DS+ S+  +  ++  R  Y   R LK 
Sbjct: 128  LRLIHHGLLKEAAEIDNLEVPKVKGSKEEGEDVDSEDSDAEAQDIIQKREAYVK-RALKE 186

Query: 114  ------PQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISKPTFGWIHMNGMPH 165
                  P++ T     E +  +  FL    ++ KC +C A +P   K  +  I    +  
Sbjct: 187  MKKMGTPEKRTEAIAEERRFVIKDFLADISKSRKCASCGAVSPTFRKDRYVKIFRKPLSK 246

Query: 166  ADIRANLIRG-CNLGETFSGGEEEKDLGASSDVDAPETHSFN--------------GTFP 210
             D  AN+ +G             ++ L AS D + P+    +               +  
Sbjct: 247  KDKNANIQKGVATSAPIVEEMARKRALQASKDKNNPDRMDVDEGVADMGEAESEEGESID 306

Query: 211  GTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPS-DVKDIIEKLWENEFELCSFISDMQ 269
              ++ A       S       K ++D      + S +V+  +E+L+E E E+ S +    
Sbjct: 307  ADEEIAGGMIADASATSSKKKKAEEDSERQAYVSSTEVRSSLERLFEKEREILSHV---- 362

Query: 270  QQGFGKKAGHS---IFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANA 326
               +  +AG++   +FF+  +LVPP KFR  +K GD++ E     L   +L A   +   
Sbjct: 363  ---YSPRAGNATAGMFFIQCLLVPPSKFRPEAKTGDAIAEASINSLYKGILSACDKMRQI 419

Query: 327  YVNQPDNAKV----------IVARWMNLQQSVNVLFD-----GKNAAGQRDMASGICQLL 371
                     V          + +    LQ +VN L D      +  AG+R+   GI Q L
Sbjct: 420  QQEMMTGTGVEGRRARTYDDLQSATAELQDAVNSLIDRDRNPTQGVAGKRN-EDGIKQKL 478

Query: 372  EKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLR 431
            EKKEGLFR+ +MGKRVN+A RSVISPD  L  NEIG+PP FA +L YPE VT  N  +L+
Sbjct: 479  EKKEGLFRKNMMGKRVNFAARSVISPDVNLQSNEIGVPPVFAKKLHYPEPVTSHNFDELK 538

Query: 432  DSIINGAEIHPGATHYLDKLSTMRL--PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE 489
            ++++NG +  PGA    D+   + L    N + R++I  +L       + P   S +   
Sbjct: 539  EAVLNGPDKWPGAVAVEDEDGNVTLLAKKNHEERMAIANQL-------LAPST-STSGGR 590

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
             K VYRHL +GDVV++NRQPTLHKPS+M H  RVL GE+T+RMHYANC+TYNADFDGDEM
Sbjct: 591  NKKVYRHLNNGDVVIMNRQPTLHKPSMMVHRARVLPGERTIRMHYANCNTYNADFDGDEM 650

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+HFPQ+E++RAEA  I +A++QY+  + G+PLR LIQDHI  +  L  +D+F  R+E+ 
Sbjct: 651  NMHFPQNELARAEAATIADADHQYLSATAGNPLRGLIQDHISVSVALCSRDSFFTREEYN 710

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
            Q++Y++            +P     +S     +L + PAIWKP PLWTGKQ+IT +L +I
Sbjct: 711  QMVYAA-----------VRPEDNHTVS---ARLLTVPPAIWKPRPLWTGKQLITTLLKNI 756

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMH--KDKSGKKKEVV 727
                                            K    G L+ T+K     D+ G+  E  
Sbjct: 757  --------------------------------KPVTHGPLTMTSKSQTPADRWGQGSE-- 782

Query: 728  EGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGS 784
                                  E  +I+K+ +L+ G++DK Q   A  G V+ V E YG 
Sbjct: 783  ----------------------EGTVIFKDGELLMGIMDKKQIGPAAGGFVNAVYEAYGH 820

Query: 785  NTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALE 844
               G LLSAL R+ T  L M   +CGVDDL++  + E  R+  LH +E +G  V  + + 
Sbjct: 821  TACGRLLSALGRMLTKLLHMRAHSCGVDDLILTAEGEEARRQALHAAETVGLEVASKYVS 880

Query: 845  LEDGA-EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKP 903
            L++     D  +L   +E  +R   D +  +   ++T+  +   SS+V    L +GL+KP
Sbjct: 881  LDNKKLRSDNPELLRRLETVLR---DDSKQHGLDQLTNVASGKVSSAVTGACLPDGLVKP 937

Query: 904  TGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAG 963
               N + LMT++GAKGS+VN   IS +LGQQ LEG+RVP MVSGKTLP F P++ + RAG
Sbjct: 938  FPHNRMQLMTSTGAKGSQVNANLISCNLGQQVLEGRRVPVMVSGKTLPCFKPFESSVRAG 997

Query: 964  GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
            G+++DRFLTG+RPQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E LK+ YD +VR
Sbjct: 998  GYVVDRFLTGIRPQEYYFHTMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVHYDTTVR 1057

Query: 1024 DADGSIVQFCYGEDGVDVHQTSFISKFDALA-----------------------ARERGR 1060
            D+DGS+VQF YGEDG+D  +  +++ F   A                       A E  +
Sbjct: 1058 DSDGSMVQFLYGEDGLDPTRVRYLNDFRFSAENYKSIVQSMDVQGQLSKLTLEEANEWNK 1117

Query: 1061 G--RGRNKFCDKGSHTFVMGRNQEMIYKKCSGQL-DASNAYIMELPDAL-KDNAEKFADK 1116
               R   K  D G     + +     Y   S     A   Y+ + PD L KD  +     
Sbjct: 1118 TAVRKYRKTQDLGCMDPAISQWNPGRYAVTSEAFYSAKKKYVEDNPDKLIKDKKQN---- 1173

Query: 1117 FLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNV 1176
             + N ++K+ F  ++  K++ SL +PGE VG++A QS+GEPSTQMTLNTFHLAG    NV
Sbjct: 1174 -VENGLSKKTFNAVMDLKYLKSLIEPGEAVGVVAGQSIGEPSTQMTLNTFHLAGHSAKNV 1232

Query: 1177 TLGIPRLQEILTIASKDIKTPVIT 1200
            TLGIPRL+EI+  AS  I TP +T
Sbjct: 1233 TLGIPRLREIVMTASASISTPSMT 1256


>gi|321257682|ref|XP_003193673.1| DNA-directed RNA polymerase I 190 kDa polypeptide [Cryptococcus
            gattii WM276]
 gi|317460143|gb|ADV21886.1| DNA-directed RNA polymerase I 190 kDa polypeptide, putative
            [Cryptococcus gattii WM276]
          Length = 1726

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1041 (42%), Positives = 600/1041 (57%), Gaps = 166/1041 (15%)

Query: 244  PSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHS---------IFFLGVVLVPPIKF 294
            P++V+  +  L+  E E+C  I        G  A  S         +FF+ VV V P +F
Sbjct: 348  PAEVRAHLRLLFNKEPEICRLIYGRH----GNPAALSSVAPPPLADMFFMEVVPVTPTRF 403

Query: 295  RLPSKGGDSVMEHPQTVLLSKVL---QANIYLANAYVNQPDNAK---------------- 335
            R  ++ GD + E+ Q  LL+ VL   Q    L    +NQ    +                
Sbjct: 404  RPAARMGDELFENSQNSLLTAVLTTCQRIQKLNQDLINQAKAERGELVLDAVAKAQGSRT 463

Query: 336  --VIVARWMNLQQSVNVLFDG-KNAAGQRD---MASGICQLLEKKEGLFRQKLMGKRVNY 389
              +++   + LQ  VN   D  KN A  R       G+ QLLEKKEGLFR+ +MGKRVNY
Sbjct: 464  FELLLEALIKLQHDVNSFVDSTKNPAVMRQGKLPPPGVKQLLEKKEGLFRKHMMGKRVNY 523

Query: 390  ACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY-- 447
            A RSVISPD  +  NEIGIPP FA +LTYPE VT  NV +LR  +ING +IHPGA     
Sbjct: 524  AARSVISPDINIETNEIGIPPVFAKKLTYPEPVTQQNVAELRQLVINGPKIHPGAALVQN 583

Query: 448  -------LDKLSTMRLPPNKKMRISIGRKLDTSRG-------AIVQPGKDSDNEFEGKMV 493
                   LDKL+          RIS+  +L T +G       A V P        + K V
Sbjct: 584  EDGTQISLDKLTL-------DQRISLASQLLTPQGSEDNIGAATVGPAA------KNKKV 630

Query: 494  YRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHF 553
            YRH++DGD+V++NRQPTLHKPS+M H V+VL GEKT+RMHYANC++YNADFDGDEMN+HF
Sbjct: 631  YRHIRDGDIVILNRQPTLHKPSMMCHRVKVLLGEKTIRMHYANCNSYNADFDGDEMNIHF 690

Query: 554  PQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLY 613
            PQ+EV+RAEA  I N +NQY+ P++G PLR LIQDH+V+   +  K +F  R+++ QL+Y
Sbjct: 691  PQNEVARAEAQMIANTDNQYLVPTSGGPLRGLIQDHVVAGVWMCNKSSFFTREQYFQLIY 750

Query: 614  SSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGR 673
             +  + +   ++TG+   R++I         L PAI+KP+PLWTGKQ+++ +L ++T   
Sbjct: 751  GALRTEN---NYTGR--SRIII---------LPPAIFKPKPLWTGKQIMSTILANLT--- 793

Query: 674  PPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKG-KLSKTNKMHKDKSGKKKEVVEGKPG 732
             PF                           N KG  L+  NK+                 
Sbjct: 794  -PF---------------------------NAKGLNLTSRNKV----------------- 808

Query: 733  EEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTL 790
            + K   ++ S +  +SEE ++     LV GV+DK+Q+  + YGLVH+V ELYG   A  L
Sbjct: 809  QNKLWRRDDSSDPAMSEENVVFLDGHLVCGVLDKSQYGASGYGLVHSVHELYGPYVANRL 868

Query: 791  LSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAE 850
            L  LSRL T +LQ   F+C +DDL++  + E+ RK+ L  +   G    ++ + L +G+ 
Sbjct: 869  LGVLSRLLTKYLQHDAFSCRMDDLILTAEGEKIRKDILDKASGDGAVAAMKYVGLPEGST 928

Query: 851  I-DPIKLKS---EIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
            I DP   K+    +E+ +R   D  +A  D  M S  NK T+S + N++L + L++P   
Sbjct: 929  IEDPDTAKNLAIRLEEILR--DDHLMAGLDAVMQSAFNK-TTSKINNDVLPDHLVRPFPD 985

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
            N + +MT SGAKGSKVN  QIS+ LGQQ LEG+RVP MVSGKTLPSF  +D + RAGG++
Sbjct: 986  NNMQMMTISGAKGSKVNASQISTLLGQQALEGRRVPTMVSGKTLPSFKAFDTSARAGGYV 1045

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
             +RFLTG+RPQEYYFHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE +K+ YD++VRD+D
Sbjct: 1046 ANRFLTGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGVKVHYDHTVRDSD 1105

Query: 1027 GSIVQFCYGEDGVDVHQTSFISKFDALAARERGR------GRGRNKFCD----------K 1070
             S++QF YGED +DV + + ++KFD  AA           G    K  D          K
Sbjct: 1106 SSVLQFLYGEDSLDVTKQTHLNKFDFAAANHLSLLNKVRPGDIAGKVSDEALSHMKKALK 1165

Query: 1071 GSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDN--------AEKFADKFLSNEM 1122
              H  V   ++   Y         S AY  +L + ++DN         E  A  + S  +
Sbjct: 1166 KPHKHVPALSE---YSPSRYIGSMSEAYAKKLNNYIEDNKLGYIAKKGENKASPYTSERI 1222

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
             +++FL L + +++ SL +PGE VGLLASQ VGEPSTQMTLNTFHLAG G  NVTLGIPR
Sbjct: 1223 PEKEFLGLARARYMRSLVEPGEAVGLLASQGVGEPSTQMTLNTFHLAGHGAANVTLGIPR 1282

Query: 1183 LQEILTIASKDIKTPVITCPL 1203
            L+EI+  AS    TP +  PL
Sbjct: 1283 LREIVMTASSKPTTPTMKLPL 1303



 Score = 79.7 bits (195), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 40/67 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TC    F CPGHFGHI+L  PVY+PL  N  Y LL+ +C +CHHFK         V +
Sbjct: 63  CETCHLSYFACPGHFGHIELPTPVYHPLFMNQCYHLLRGVCLYCHHFKMPEIVAASYVAR 122

Query: 61  LELIIKG 67
           L L+  G
Sbjct: 123 LRLLDAG 129


>gi|405120183|gb|AFR94954.1| RNA polymerase I largest subunit [Cryptococcus neoformans var. grubii
            H99]
          Length = 1727

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1066 (41%), Positives = 607/1066 (56%), Gaps = 158/1066 (14%)

Query: 213  QDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQG 272
            QD      +  SG V     + + + S    P++V+  +  L+  E E+C  I       
Sbjct: 322  QDVGQTVAKTASGQVKGTRGRHERVMS----PAEVRAHLRLLFGKEPEICRLIYGRH--- 374

Query: 273  FGKKAGHS---------IFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVL---QAN 320
             G  A  S         +FF+ VV V P +FR  ++ GD + E+ Q  LL+ VL   Q  
Sbjct: 375  -GNPAALSSVAPPPLADMFFMEVVPVTPTRFRPAARMGDELFENSQNSLLTTVLSTCQRI 433

Query: 321  IYLANAYVNQPDNAK------------------VIVARWMNLQQSVNVLFDG-KNAAGQR 361
              L    +NQ    +                  +++   + LQ  VN   D  KN A  R
Sbjct: 434  QKLNQDLINQAKAERGELVLDAVAKAQGGRTFELLLEALIKLQHDVNSFVDSTKNPAVMR 493

Query: 362  D---MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTY 418
                   G+ QLLEKKEGLFR+ +MGKRVNYA RSVISPD  +  NEIGIPP FA +LTY
Sbjct: 494  QGKLPPPGVKQLLEKKEGLFRKHMMGKRVNYAARSVISPDINIETNEIGIPPVFAKKLTY 553

Query: 419  PERVTPWNVVKLRDSIINGAEIHPGATHY---------LDKLSTMRLPPNKKMRISIGRK 469
            PE VT  NV +LR  +ING +IHPGA            LDKL+          RIS+  +
Sbjct: 554  PEPVTQQNVAELRQLVINGPKIHPGAALVQNEDGTQISLDKLTL-------DQRISLANQ 606

Query: 470  LDTSRGAIVQPGKDSDN-EFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK 528
            L T +G+    G  S     + K VYRH++DGD+V++NRQPTLHKPS+M H V+VL GEK
Sbjct: 607  LLTPQGSEDNIGAASIGPAAKNKKVYRHIRDGDIVILNRQPTLHKPSMMCHRVKVLLGEK 666

Query: 529  TLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQD 588
            T+RMHYANC++YNADFDGDEMN+HFPQ+EV+RAEA  I N +NQY+ P++G PLR LIQD
Sbjct: 667  TIRMHYANCNSYNADFDGDEMNIHFPQNEVARAEAQMIANTDNQYLVPTSGGPLRGLIQD 726

Query: 589  HIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPA 648
            H+V+   +  K +F  R+++ QL+Y +  + +   ++TG+             ++ L PA
Sbjct: 727  HVVAGVWMCNKSSFFTREQYFQLIYGALRTEN---NYTGR-----------SRIITLPPA 772

Query: 649  IWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKG- 707
            I+KP+PLWTGKQ+++ +L ++T                                 N +G 
Sbjct: 773  IFKPKPLWTGKQIMSTILTNLT-------------------------------PSNAQGL 801

Query: 708  KLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKA 767
             L+  NK+                 + K   ++ S +  +SEE ++     LV GV+DK+
Sbjct: 802  NLTSRNKV-----------------QNKLWRRDDSSDPAMSEENVIFLDGHLVCGVLDKS 844

Query: 768  QF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERK 825
            Q+  + YGLVH+V ELYG   A  LL  LSRL T +LQ   F+C +DDL++  + E+ RK
Sbjct: 845  QYGASGYGLVHSVHELYGPYVANRLLGVLSRLLTKYLQHDAFSCRMDDLILTAEGEKIRK 904

Query: 826  NHLHGSEEIGKRVHLEALELEDGAEI-DPIKLKS---EIEKAMRGGGDAAVAYFDMKMTS 881
            + L  +   G    ++ + L +G++I DP   K+    +E+ +R   D  +A  D  M S
Sbjct: 905  DILDKASGDGAIAAMKYVGLPEGSKIEDPDTAKNLAIRLEEILR--DDHLMAGLDAVMQS 962

Query: 882  QLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRV 941
              NK T+S + N++L + L++P   N + +MT SGAKGSKVN  QIS+ LGQQ LEG+RV
Sbjct: 963  AFNK-TTSKINNDVLPDHLVRPFPDNNMQMMTISGAKGSKVNASQISTLLGQQALEGRRV 1021

Query: 942  PRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSG 1001
            P MVSGKTLPSF  +D + RAGG++ +RFLTG+RPQEYYFHCMAGREGL+DTAVKTSRSG
Sbjct: 1022 PTMVSGKTLPSFKAFDTSARAGGYVANRFLTGIRPQEYYFHCMAGREGLIDTAVKTSRSG 1081

Query: 1002 YLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGR- 1060
            YLQRCLIK+LE +K+ YD++VRD+D S++QF YGED +DV + + ++KFD  AA      
Sbjct: 1082 YLQRCLIKHLEGVKVHYDHTVRDSDSSVLQFLYGEDSLDVTKQTHLNKFDFAAANHLSLL 1141

Query: 1061 -----GRGRNKFCD----------KGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDA 1105
                 G    K  D          K  H  V   ++   Y         S AY  +L + 
Sbjct: 1142 NKVRPGDTAGKVSDEALSHMKKALKKPHKHVPALSE---YSPSRYIGSMSEAYAKKLNNY 1198

Query: 1106 LKDN--------AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEP 1157
            ++DN         E  A  + S  + +++FL L + +++ SL +PGE VGLLASQ VGEP
Sbjct: 1199 IEDNKLGYIAKKGENKASPYTSERVPEKEFLGLARARYMRSLVEPGEAVGLLASQGVGEP 1258

Query: 1158 STQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            STQMTLNTFHLAG G  NVTLGIPRL+EI+  AS    TP +  PL
Sbjct: 1259 STQMTLNTFHLAGHGAANVTLGIPRLREIVMTASSKPTTPTMKLPL 1304



 Score = 79.7 bits (195), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 40/67 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TC    F CPGHFGHI+L  PVY+PL  N  Y LL+ +C +CHHFK         V +
Sbjct: 63  CETCHLSYFACPGHFGHIELPTPVYHPLFMNQCYHLLRGVCLYCHHFKMPEIVAASYVAR 122

Query: 61  LELIIKG 67
           L L+  G
Sbjct: 123 LRLLDAG 129


>gi|58266720|ref|XP_570516.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|134110900|ref|XP_775914.1| hypothetical protein CNBD3210 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50258580|gb|EAL21267.1| hypothetical protein CNBD3210 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57226749|gb|AAW43209.1| conserved hypothetical protein [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1727

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1066 (41%), Positives = 607/1066 (56%), Gaps = 158/1066 (14%)

Query: 213  QDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQG 272
            QD      +  SG V     + + + S    P++V+  +  L++ E  +C  I       
Sbjct: 322  QDVGQTVAKTASGQVKGTRGRHERVMS----PAEVRAHLRLLFDKEPRICRLIYGRH--- 374

Query: 273  FGKKAGHS---------IFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVL---QAN 320
             G  A  S         +FF+ VV V P +FR  ++ GD + E+ Q  LL+ VL   Q  
Sbjct: 375  -GNPAALSSVAPPPLADMFFMEVVPVTPTRFRPAARMGDELFENSQNSLLTAVLSTCQRI 433

Query: 321  IYLANAYVNQPDNAK------------------VIVARWMNLQQSVNVLFDG-KNAAGQR 361
              L    +NQ    +                  +++   + LQ  VN   D  KN A  R
Sbjct: 434  QKLNQDLINQAKAERGEHVLDAVAKAQGGRTFELLLEALIKLQHDVNSFVDSTKNPAVMR 493

Query: 362  D---MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTY 418
                   G+ QLLEKKEGLFR+ +MGKRVNYA RSVISPD  +  NEIGIPP FA +LTY
Sbjct: 494  QGKLPPPGVKQLLEKKEGLFRKHMMGKRVNYAARSVISPDINIETNEIGIPPVFAKKLTY 553

Query: 419  PERVTPWNVVKLRDSIINGAEIHPGATHY---------LDKLSTMRLPPNKKMRISIGRK 469
            PE VT  NV +LR  +ING +IHPGA            LDKL+          RIS+  +
Sbjct: 554  PEPVTQQNVAELRQLVINGPKIHPGAALVQNEDGTQISLDKLTL-------DQRISLANQ 606

Query: 470  LDTSRGAIVQPGKDSDN-EFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK 528
            L T +G+    G  S     + K VYRH++DGD+V++NRQPTLHKPS+M H V+VL GEK
Sbjct: 607  LLTPQGSEDNIGAASIGPAAKNKKVYRHIRDGDIVILNRQPTLHKPSMMCHRVKVLLGEK 666

Query: 529  TLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQD 588
            T+RMHYANC++YNADFDGDEMN+HFPQ+EV+RAEA  I N +NQY+ P++G PLR LIQD
Sbjct: 667  TIRMHYANCNSYNADFDGDEMNIHFPQNEVARAEAQMIANTDNQYLVPTSGGPLRGLIQD 726

Query: 589  HIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPA 648
            H+V+   +  K +F  R+++ QL+Y +  + +   ++TG+             ++ L PA
Sbjct: 727  HVVAGVWMCNKSSFFTREQYFQLIYGALRTEN---NYTGR-----------SRIITLPPA 772

Query: 649  IWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKG- 707
            I+KP+PLWTGKQ+++ +L ++T                                 N KG 
Sbjct: 773  IFKPKPLWTGKQIMSTILTNLT-------------------------------PSNAKGL 801

Query: 708  KLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKA 767
             L+  NK+                 + K   ++ S +  +SEE ++     LV GV+DK+
Sbjct: 802  NLTSRNKV-----------------QNKLWRRDDSSDPAMSEENVIFLDGHLVCGVLDKS 844

Query: 768  QF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERK 825
            Q+  + YGLVH+V ELYG   A  LL  LSRL T +LQ   F+C +DDL++  + E+ RK
Sbjct: 845  QYGASGYGLVHSVHELYGPYIANRLLGVLSRLLTKYLQHDAFSCRMDDLILTAEGEKIRK 904

Query: 826  NHLHGSEEIGKRVHLEALELEDGAEI-DPIKLKS---EIEKAMRGGGDAAVAYFDMKMTS 881
            + L  +   G    ++ + L +G++I DP   K+    +E+ +R   D  +A  D  M S
Sbjct: 905  DILDKASGDGAIAAMKYVGLPEGSKIEDPDTAKNLAIRLEEILR--DDHLMAGLDAVMQS 962

Query: 882  QLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRV 941
              NK T+S + N++L + L++P   N + +MT SGAKGSKVN  QIS+ LGQQ LEG+RV
Sbjct: 963  AFNK-TTSKINNDVLPDHLVRPFPDNNMQMMTISGAKGSKVNASQISTLLGQQALEGRRV 1021

Query: 942  PRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSG 1001
            P MVSGKTLPSF  +D + RAGG++ +RFLTG+RPQEYYFHCMAGREGL+DTAVKTSRSG
Sbjct: 1022 PTMVSGKTLPSFKAFDTSARAGGYVANRFLTGIRPQEYYFHCMAGREGLIDTAVKTSRSG 1081

Query: 1002 YLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGR- 1060
            YLQRCLIK+LE +K+ YD++VRD+D S++QF YGED +DV + + ++KFD  AA      
Sbjct: 1082 YLQRCLIKHLEGVKVHYDHTVRDSDSSVLQFLYGEDSLDVTKQTHLNKFDFAAANHLSLL 1141

Query: 1061 -----GRGRNKFCD----------KGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDA 1105
                 G    K  D          K  H  V   ++   Y         S AY  +L + 
Sbjct: 1142 NKVRPGDIAGKVSDEALSHMKKALKKPHKHVPALSE---YSPSRYIGSMSEAYAKKLNNY 1198

Query: 1106 LKDN--------AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEP 1157
            ++DN         E  A  + S  + +++FL L + +++ SL +PGE VGLLASQ VGEP
Sbjct: 1199 IEDNKLGYITKKGESKASPYTSERVPEKEFLGLARARYMRSLVEPGEAVGLLASQGVGEP 1258

Query: 1158 STQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            STQMTLNTFHLAG G  NVTLGIPRL+EI+  AS    TP +  PL
Sbjct: 1259 STQMTLNTFHLAGHGAANVTLGIPRLREIVMTASSKPTTPTMKLPL 1304



 Score = 79.7 bits (195), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 40/67 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TC    F CPGHFGHI+L  PVY+PL  N  Y LL+ +C +CHHFK         V +
Sbjct: 63  CETCHLSYFACPGHFGHIELPTPVYHPLFMNQCYHLLRGVCLYCHHFKMPEIVATSYVAR 122

Query: 61  LELIIKG 67
           L L+  G
Sbjct: 123 LRLLDAG 129


>gi|310798568|gb|EFQ33461.1| RNA polymerase Rpb1 [Glomerella graminicola M1.001]
          Length = 1707

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/1295 (37%), Positives = 668/1295 (51%), Gaps = 182/1295 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC   Q  CPGH GHI+L VPVY+P+  + +  LL+  C +C  F+   RE+ +   K
Sbjct: 62   CATCNLNQSSCPGHAGHIELPVPVYHPIFLDQVLRLLRSQCVYCKGFRMRHREINRYSCK 121

Query: 61   LELIIKG--------DIIAAKSLDLDLP-------SESSNPEDSDVSNKSSC-------S 98
            L L+  G        D I  +   L LP       SE+     S V N           +
Sbjct: 122  LRLLQHGLLHEAHLVDAIGEELKGLALPGVPTDYESEAEEEGTSSVDNIIGAREAYVRQA 181

Query: 99   MVTPRGNYDNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWI 158
            + + + +   VR  K +    ++    K  L Q  K    +C NC   +P   K  F  I
Sbjct: 182  LKSHKLSLGEVRKGKHEGAIEMRRELIKDFLTQITK--PRRCDNCGGISPAYRKDRFVKI 239

Query: 159  HMNGMPHADIRANLIRGCNLGETF-SGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAA 217
                +   D+     R  ++ ++  +     K     + VDA E         G  D   
Sbjct: 240  FEKALSERDLAQMAQRNLHVKDSMATAARVRKSKSKRNAVDADE---------GVADIDM 290

Query: 218  RRHQKGSGAVPSGFKKQKDLF---SGPLLPS--------------DVKDIIEKLWENEFE 260
               ++    +      ++DL     G L+ +              +V+  + +L+E E +
Sbjct: 291  TSAEENDVEMRDASDDEQDLADKEDGSLVDAVAVAPGQQRYISAMEVRARLRELFEKEQD 350

Query: 261  LCSFI-SDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQA 319
            + S + S         K    +FF+  +LVPP KFR  ++ GDS +   Q   L K++  
Sbjct: 351  IMSLVYSSKPMTKKSAKVSADMFFIRTILVPPNKFRPEARTGDSQISEAQQNSLYKMIMR 410

Query: 320  N------IYLANAYVNQ---PDNAKVIVARWMNLQQSVNVLFD-GKN----AAGQRDMAS 365
            N      I+ +    +Q   P +   +   W  LQ+SVN L D  KN    AA +R+   
Sbjct: 411  NCGNIARIHQSVGATDQYGRPRDITDLHQVWTELQESVNSLIDKSKNPVQGAAAKRN-ED 469

Query: 366  GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPW 425
            GI Q LEKKEGLFR+ +MGKRVN+A RSVISPDP +  NEIG+PP FA +LTYPE VT  
Sbjct: 470  GIKQKLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSH 529

Query: 426  NVVKLRDSIINGAEIHPGAT--HYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKD 483
            N   ++ ++ING +  PGA    Y +         +   R+S+  +L       + P  +
Sbjct: 530  NFRDMQQAVINGVDKWPGAAAIEYENGQIVNLRSKSVDDRVSLANQL-------LAPTNN 582

Query: 484  SDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNAD 543
              +  + K VYRHL +GDVVL+NRQPTLHKPSIM H VRVL GEKT+RMHYANC+TYNAD
Sbjct: 583  QMSGMKSKKVYRHLTNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNAD 642

Query: 544  FDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFL 603
            FDGDEMN+HFPQ+EV+RAEA  I + ++QY+  + G PLR LIQDH+  +  L  KDTF 
Sbjct: 643  FDGDEMNMHFPQNEVARAEALQIADTDHQYLSGTAGKPLRGLIQDHLSVSVALCNKDTFF 702

Query: 604  NRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVIT 663
            +RD + QL+YS+    SG        G+R+       E+LP  PA+ KP P WTGKQVI+
Sbjct: 703  DRDSYQQLIYSALRPESG-----HILGERI-------ELLP--PAVIKPRPRWTGKQVIS 748

Query: 664  AVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKK 723
             +L +I   +PP                            N +G         K +   K
Sbjct: 749  TILKNI---KPP----------------------------NGEGLWMAGKCQVKGEQWGK 777

Query: 724  KEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQEL 781
              V EG                      +L      + G++DKA    +  GL+H++ E+
Sbjct: 778  SHVEEG---------------------SVLFQDGQFLTGILDKAHLGPSSGGLIHSIHEI 816

Query: 782  YGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLE 841
            YG   AG LLS + RL T +L M  FTCG+DDL +  + E+ R+  L  +  IG  V  +
Sbjct: 817  YGPAVAGKLLSGMGRLLTRYLNMRAFTCGMDDLRLTSEGEQARREALKAARTIGLEVAAK 876

Query: 842  ALELEDGA--EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEG 899
             + LED A    DP +L   +E+ MR   D      DM M +Q +   SS+V    L  G
Sbjct: 877  YVSLEDKAPNSTDP-ELLIRLEEVMR--DDTKQEGLDMLM-NQSSGMVSSAVTTACLPVG 932

Query: 900  LLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWA 959
            L+K   KN +  MTTSGAKGS+VN   IS +LGQQ LEG+RVP MVSGK+LP F P++  
Sbjct: 933  LVKQFPKNQMQSMTTSGAKGSQVNANLISCNLGQQVLEGRRVPLMVSGKSLPCFKPFETD 992

Query: 960  PRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYD 1019
             RAGG+I+ RFLTG+RPQEYYFH MAGREGL+DTAVKTSRSGYLQRC+IK +E L ++YD
Sbjct: 993  VRAGGYIVQRFLTGIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCIIKGMEGLTVTYD 1052

Query: 1020 YSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGR 1079
             +VRDADG++VQF YGEDG+D  +  +++ F +   R  G    +  F +         +
Sbjct: 1053 STVRDADGTLVQFLYGEDGLDPTKQKYLTDF-SFVLRNVGSESAQLNFSNGFKEKLAGSK 1111

Query: 1080 NQEMIYKKCS---GQLDASNA---------------------------YIMELPDALKDN 1109
            ++ + + K +    +L+++ A                           YI +  D L  +
Sbjct: 1112 DEILKHMKSAIKHAKLNSAAAKDPIISMVNPARVAFATSEKFYEQMTKYIKDNEDGLIRD 1171

Query: 1110 AEKFADKFLSNEMAKQDFLKLV-KHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHL 1168
                +   ++     +   +LV   K++ SL + GE VG++A QSVGEPSTQMTLNTFHL
Sbjct: 1172 KSAVSSGLINAPAVSKKSAELVFAAKYMRSLVEAGEGVGIVAGQSVGEPSTQMTLNTFHL 1231

Query: 1169 AGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            AG    NVTLGIPRL+EIL  AS+ I TP +   L
Sbjct: 1232 AGHSAKNVTLGIPRLREILMTASRSISTPAMNLLL 1266


>gi|118363248|ref|XP_001014750.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena
            thermophila]
 gi|89296616|gb|EAR94604.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena thermophila
            SB210]
          Length = 1727

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/1356 (35%), Positives = 690/1356 (50%), Gaps = 254/1356 (18%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C+TCG     CPGH GH++L++PVYNP L + L  LL+  C  C+ F+ + ++++     
Sbjct: 70   CETCGCEGLECPGHMGHVELLLPVYNPFLIDKLLKLLRAQCLKCNKFRMTNQKLKMFANV 129

Query: 61   LELIIKGDIIAAK-------SLDL----------------DLPSESSNPEDSDVSN---- 93
              LI  G I  AK       SL +                D   +SS+ + SD       
Sbjct: 130  FTLIKLGYIFEAKEYKQTCESLSILQIQNNKETTQIQSYADKRRKSSDYKSSDTEQIMPK 189

Query: 94   KSSCSMVTPRGNYDNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKP 153
            KS       +   +N+ NL+ ++   L     K    +      +      +   +  K 
Sbjct: 190  KSQIEQEGAKIYQNNINNLEDKKKQLLSLINVKQNNTEQFSKGVSYTNAMNSAFEQALKE 249

Query: 154  TFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQ 213
             +  I++   PH       IR     E FS    +K    +    + + H     +    
Sbjct: 250  FWNSINIGKCPHCKEPQQAIR----KEGFSKFFIKKSSSEAKKSSSQKKHQ--DDYTSDD 303

Query: 214  DTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDM----- 268
            D +   H K   A  +    QK L   PL   +VK+++ + W+ E +L + I        
Sbjct: 304  DQSESGHSKAEKANAN----QKYL--DPL---EVKELMRRFWDEERKLLNIIYGTIEVTP 354

Query: 269  -----QQQGFG-KKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIY 322
                   +GF  ++  +++FF+ V+ V P +FR  +K G+    H  TV+L+K+LQ N+ 
Sbjct: 355  QTLKNSSKGFMIRRNDYNMFFIEVIPVTPNRFRPENKLGEQTFLHGHTVVLTKILQFNVE 414

Query: 323  LANAYV----------------------------------NQPDNAKV----IVARWMNL 344
            L    V                                   Q  N  V    ++ +W+++
Sbjct: 415  LRRMIVLQRQSLSEEKKKKLIDQLDSRFQNQLQLKQNQNFQQTINNIVKLNDVITKWLDI 474

Query: 345  QQSVNVLFDGKNAAGQRDM-ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
            Q++VN   D   A   +D   +GI QLLEKKEGLFR K+MGKRVNYA RSVISPDP L  
Sbjct: 475  QEAVNCFLDSSKATKTQDREGTGIRQLLEKKEGLFRMKMMGKRVNYAARSVISPDPNLNT 534

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP-NKKM 462
            NE+G+P + A +LT+PE V  +N   LR  IING   HPGA   ++  + + L   N++ 
Sbjct: 535  NEVGVPLFVAKKLTFPEYVNEYNAKHLRKLIINGPFQHPGANFIVENGNKISLEALNEQQ 594

Query: 463  RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
            RI + + L               N  + K+VYRHLQ GDV+L NRQPTLHK S+M+H+ R
Sbjct: 595  RIGLAKTL--------------LNNSKNKVVYRHLQSGDVLLFNRQPTLHKASLMSHIAR 640

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            VL  E+T+RMHYANC +YNADFDGDEMN+HF Q  ++RAE Y+I   + Q++  +NG+PL
Sbjct: 641  VLPREQTIRMHYANCKSYNADFDGDEMNLHFLQSHLARAEGYHISLNDRQFINTTNGNPL 700

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSS-SGLGSFTGKPGQRVLISRSEQE 641
            R LIQD IVSA  LT K+ FL ++EF +L+Y++  +      + T KP +  L+      
Sbjct: 701  RELIQDTIVSAVFLTHKEKFLQKEEFQELVYAATWNMFEKNNNSTTKPYKIFLVP----- 755

Query: 642  VLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDR 701
                 PAI KP+PLWTGKQ+IT ++  + +       E+G  +     K +  AD+ +  
Sbjct: 756  -----PAIQKPKPLWTGKQLITNIIKIVVQQNQKKDYEQGVYME---MKAKLTADELTGI 807

Query: 702  KKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVR 761
             K+D                                              ++I  N+L++
Sbjct: 808  YKDDTV--------------------------------------------VIIRDNELLQ 823

Query: 762  GVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILK 818
            GV+DK QF   A YGL+H   ELYG++  G L +AL++L +  LQMHGFTCG+DDLL+ K
Sbjct: 824  GVLDKNQFGAGATYGLMHAFYELYGASLTGKLFTALAKLLSAHLQMHGFTCGMDDLLVSK 883

Query: 819  DKERER-----KNHLHGSEEIGKRVHLEALELEDGAEI----------------DPIKLK 857
            + + +R       H+ G     + V ++  E+  G  +                + +K K
Sbjct: 884  ESDEQRLQEIKAAHVDGVLACAEFVGMKDYEVPQGWNLYNRPNFVLNSKGRFSSNVLKRK 943

Query: 858  SEIE--------------KAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKP 903
             E++              K +R   D  +A     +         S ++N  L  GL+K 
Sbjct: 944  PEVDYLSNENPILEQIQRKLVR---DPQLAEAQDNVYKSTMSQKGSKILNTALG-GLIKK 999

Query: 904  TGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAG 963
               N  + MT SGAKGSKVN  Q+S+ LGQQELEG+RVP M +G+TLP F P+D  PRAG
Sbjct: 1000 FPFNNFTTMTNSGAKGSKVNHTQVSALLGQQELEGRRVPVMATGRTLPCFLPYDPNPRAG 1059

Query: 964  GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
            GFI DRFL+GLRP E++FHCMAGREGL+DTAVKTSRSGYLQRCL+K+LE LK++YDY+VR
Sbjct: 1060 GFISDRFLSGLRPAEFFFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEALKVAYDYTVR 1119

Query: 1024 DADGSIVQFCYGEDGVDVHQTSFISKFDALAA---------------------------R 1056
            DADGS+VQF YGED +D ++  ++ KF  LA                            +
Sbjct: 1120 DADGSVVQFYYGEDSIDPNKVKYLEKFRFLAENFTSFTQKYDPYHLKDSHDFESVNRFLK 1179

Query: 1057 ERGR---GRGRNKFCDKGSHTFVMGRN----QEMIYKKCSGQLDASNAYIMELPDALKDN 1109
            +R R        K CD   + F+ G++     E +YK            + E     + +
Sbjct: 1180 KRKRQESSETEKKTCDTIMNNFLPGKHIGSVSERVYKN-----------VKEYIKKEQQS 1228

Query: 1110 AEKFADKF--LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFH 1167
            A+ +++ F    ++++ Q F  L   K++ SL  PG+ VG LA+Q++GEPSTQMTLNTFH
Sbjct: 1229 ADPYSNIFNIKQDQLSPQKFHMLFNVKYLNSLIHPGDSVGCLAAQAIGEPSTQMTLNTFH 1288

Query: 1168 LAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            LAG G +N+TLGIPRL+EIL  A+  +KTPV+   L
Sbjct: 1289 LAGHGGVNLTLGIPRLREILMTATDKLKTPVMLLNL 1324


>gi|346323105|gb|EGX92703.1| DNA-directed RNA polymerase I subunit RPA1 [Cordyceps militaris CM01]
          Length = 1929

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/1273 (37%), Positives = 664/1273 (52%), Gaps = 163/1273 (12%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC      CPGH GHI L VPVY+P+  +  Y LL+  C +C  F+ S +++ K + K
Sbjct: 62   CTTCNLNHLYCPGHPGHIKLPVPVYHPIFLDQAYHLLRATCLYCKGFRLSAKDLHKYMCK 121

Query: 61   LELIIKG-----DIIAA-----------KSLDLDLPSESSNPEDSDVSN-----KSSCSM 99
            L L+  G      I+ A            S+ L+L    +  + S + N     +    +
Sbjct: 122  LRLLQHGLVHEAHIVGAIGETDFSGALEASVSLELDGSEAEDDTSSIDNVTRKREKYVQL 181

Query: 100  VTPRGNYDNVRNLKPQEWTSLQFAEAKLALLQFLKIETTK---CGNCKAKNPRISKPTFG 156
               RG     R++K  +       + +  +++    E TK   C +C   +P   K +F 
Sbjct: 182  CLQRGRKTR-RDIKKGKHEGT--GQMRREVIKEFLAELTKRRECVSCNGISPTYRKDSFV 238

Query: 157  WIHMNGMPHADI----RANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGT 212
             I    +   D     + NL  G  +   +     +KD    +  D+ E  S +G     
Sbjct: 239  KIFEKALSDKDTAKMAQRNLKFGDAMSRVYQKTMTKKDQQNETTHDSSEDESQSGEDVTM 298

Query: 213  QDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQ--Q 270
            QD             P+  ++        + P +V+  + +L++ E +L S + +     
Sbjct: 299  QDADEEESTIPKANRPAVNQRY-------ISPMEVRARLVELFDKEQDLVSLLYNATPAT 351

Query: 271  QGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDS-VMEHPQTVLLSKVLQANIYLANAYVN 329
            +   K   H +FF+ V+LVPP +FR  ++ GDS + E  Q  L   +L++N  +A  + N
Sbjct: 352  KRTAKTTPH-MFFVTVLLVPPNRFRPEARTGDSQISEASQNNLYKNILRSNGKIAKLHDN 410

Query: 330  QPDNAKVIVA---RWMNLQQSVNVLFD-GKN----AAGQRDMASGICQLLEKKEGLFRQK 381
              + +  I A    W+ LQ+SVN L D  KN    AA +R+   GI Q LEKKEGLFR+ 
Sbjct: 411  VKNGSSDITALHLAWVELQESVNALVDKNKNPVQGAAAKRN-EDGIKQKLEKKEGLFRKN 469

Query: 382  LMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIH 441
            +MGKRVNYA RSVISPDP +  NEIG+PP FA +LTYPE VT  N   ++ ++ING    
Sbjct: 470  MMGKRVNYAARSVISPDPNIDTNEIGVPPVFAQKLTYPEPVTSHNFRDMQQAVINGVSKW 529

Query: 442  PGATHYLDKLSTMRLPPNKKM--RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQD 499
            PGA    D+   +    NK +  RIS+  +L       + P   S  + + K V+RH+ +
Sbjct: 530  PGAIAIEDENGQIVNLRNKSVDDRISLANQL-------LAPTNASTPKTKNKKVHRHMTN 582

Query: 500  GDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVS 559
            GDVVL+NRQPTLHKPSIM H VRVL GEKT+RMHYANC+TYNADFDGDEMN+HFPQ+EV+
Sbjct: 583  GDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPQNEVA 642

Query: 560  RAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSS 619
            RAEA  I + ++QY+  + G PLR LIQDH+  + +L  +DTF  + ++  L+YS+    
Sbjct: 643  RAEALQIADTDHQYLSGTQGKPLRGLIQDHLSVSIVLCNRDTFFTKGDYHSLIYSALRPE 702

Query: 620  SGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVE 679
            SG           +L  R   +++P  PAI KP P WTGKQ+IT +L ++          
Sbjct: 703  SG----------HILSER--LQLVP--PAIIKPVPRWTGKQIITTILKNL---------- 738

Query: 680  RGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEK 739
                                  K    G L+    MH D   K +   +  P  E     
Sbjct: 739  ----------------------KPATCGGLT----MHGDTQLKAE---QWGPNSE----- 764

Query: 740  NKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRL 797
                     E  + +   +L+ G++DK+Q      GLVH   E+YGS  A  LLS L RL
Sbjct: 765  ---------EGVVRVQDGELITGILDKSQIGQSSGGLVHAAHEVYGSAIASKLLSCLGRL 815

Query: 798  FTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLK 857
             T  L M  F+CG+DDL + +  E+ R   L  +  +G ++  E + L      +P    
Sbjct: 816  LTRLLNMQAFSCGMDDLRLTEVGEKARLEALEQAGVMGLKIASEYVSLP--GNTNPTNNL 873

Query: 858  SEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGA 917
                       D      D+ M +Q  +H +  V    L  GL KP  KN +  MTTSGA
Sbjct: 874  LLERLEEVLREDKKQEGLDLLM-NQGTRHITDGVQKACLPNGLEKPFPKNQMQAMTTSGA 932

Query: 918  KGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQ 977
            KGS+VN   IS +LGQQ LEG+RVP MVSGKTLP F P++   R+ G+I  RFLTG+RP 
Sbjct: 933  KGSRVNASLISCNLGQQVLEGRRVPLMVSGKTLPCFKPFETHIRSAGYIRSRFLTGIRPH 992

Query: 978  EYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGED 1037
            EYYFH MAGREGL+DTAVKTSRSGYLQRC+IK LE L +SYD SVRDADGS++QF YGED
Sbjct: 993  EYYFHHMAGREGLIDTAVKTSRSGYLQRCVIKGLEGLVVSYDASVRDADGSVIQFLYGED 1052

Query: 1038 GVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIY---------KKC 1088
            G+DV +  ++S FD +      +   + K+  KG  T    R+  M Y          K 
Sbjct: 1053 GLDVTKQKYLSNFDFILENVASQ-VVQLKYDTKGVETLTANRDDFMKYMKKAVKHAKSKG 1111

Query: 1089 SGQLD--------ASNAYIME------LPDALKDNA-----EKFADKFLSNEMA--KQDF 1127
            S   D         +N + M       +   +K+N      +K + K   N +A  +++ 
Sbjct: 1112 SASKDPLIGLYNPTTNTFAMSELFYEAMSTYVKENKSGLIRDKSSQKKTQNSVALSRKNA 1171

Query: 1128 LKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 1187
              L   K+  SL +PGE VG++A QSVGEPSTQMTLNTFHLAG    NVT GIPRL+EIL
Sbjct: 1172 EALFALKYQRSLVEPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHAATNVTQGIPRLREIL 1231

Query: 1188 TIASKDIKTPVIT 1200
              AS  I TP +T
Sbjct: 1232 MTASAIIATPSMT 1244


>gi|398396432|ref|XP_003851674.1| hypothetical protein MYCGRDRAFT_94196 [Zymoseptoria tritici IPO323]
 gi|339471554|gb|EGP86650.1| hypothetical protein MYCGRDRAFT_94196 [Zymoseptoria tritici IPO323]
          Length = 1722

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/1309 (36%), Positives = 678/1309 (51%), Gaps = 214/1309 (16%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG +   CPGH GHI+L VP Y+P   + +  LL+  C +C   K  R  V + + K
Sbjct: 62   CATCGLKNPQCPGHAGHIELPVPCYHPTFMDQVLRLLRAACIYCGRLKMRRVAVARFIAK 121

Query: 61   LELIIKGDIIAAKSLDL----------DLPSESSNPEDSD-VSNKSSCSMVTPRGNYDNV 109
            L+L+  G +     LD             P+ S   E+ D  ++  + ++   R   D +
Sbjct: 122  LQLVRYGLLKELNQLDEVQSKIGKGKDATPAGSDEDENDDGDADAKAVALRFERYVKDAI 181

Query: 110  RNLKPQEWTSLQFAEA-----KLALLQFLKIETT--KCGNCKAKN--------------P 148
            +N K     S +  E      K  + +F+   T   KCGNC   N              P
Sbjct: 182  KNAKRNGTLSTEKTETTNNARKQIIREFMAAITVGKKCGNCNGINHNHRKDRYVKIFRKP 241

Query: 149  RISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEE----KDLGASSDVDAPETHS 204
             + K     +   GM   D    + R   L  +     +E     DL  SS+ +  +   
Sbjct: 242  LLEKEHIAMVQA-GMKAKDPVVEMRRKLRLESSRKRKRDEDEAVADLSNSSE-EDGDDVD 299

Query: 205  FNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSF 264
             + +  G  + A      G     +  K Q +++   L PS V   + +L+E + E+ + 
Sbjct: 300  MDDSSEGEPEIAG-----GIADESTASKTQPEIY---LNPSRVHAQLVQLFEKDAEVLNL 351

Query: 265  ISDMQQQGFGKKAGHS-----IFFLGVVLVPPIKFRLPSKGGDS-VMEHPQTVLLSKVLQ 318
            +        G   GHS     +FFL  ++VPP K+R  +K GD+ + E  +  L   VL 
Sbjct: 352  VYG------GDSPGHSGVSADMFFLNALIVPPNKYRPEAKTGDNEIAEAQENSLYKAVLN 405

Query: 319  ANIYLANAYVNQPDNAKVIVAR------------WMNLQQSVNVLFDG-----KNAAGQR 361
            A   L              V R            W+ LQ+SVN L D      +  AG R
Sbjct: 406  ACERLTEIQRELSGTEAPAVPRYRPSTYADFETTWLTLQESVNSLIDKNLSPLQGRAGAR 465

Query: 362  DMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPER 421
            + A G+ Q LEKKEG+FR+ +MGKRVN+A R+VISPDP +  NEIG+PP FA++LTYPE 
Sbjct: 466  N-ADGVKQKLEKKEGMFRKYMMGKRVNFAARTVISPDPNIETNEIGVPPVFAVKLTYPEP 524

Query: 422  VTPWNVVKLRDSIINGAEIHPGATHYLDKL-STMRLP-PNKKMRISIGRKLDTSRGAIVQ 479
            VT WN+ ++++++ NGA I PGA    ++  S ++L   N + R ++  +L      +  
Sbjct: 525  VTQWNIEEMQEAVRNGAFIWPGALAIENENGSVLKLDRKNAEERTALANQL------LAP 578

Query: 480  PGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 539
             G  +      K V+RHL +GD+V++NRQPTLHKPS+M H  RVL GEKTLRMHYANC+T
Sbjct: 579  AGSGNTRGTRPKKVHRHLNNGDIVIMNRQPTLHKPSMMCHRARVLPGEKTLRMHYANCNT 638

Query: 540  YNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
            YNADFDGDEMN+HFPQ+E++RAEA +I + ++QY+  + G+PLR LIQDHI     LT +
Sbjct: 639  YNADFDGDEMNMHFPQNELARAEALSIADTDHQYLSATAGNPLRGLIQDHISMCVWLTSR 698

Query: 600  DTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
            + F  R ++  LLY++    SG              +    E +P  PAI KP+ LWTGK
Sbjct: 699  ELFFERGDYMNLLYAALRPESG------------HCANDRLETMP--PAIMKPKALWTGK 744

Query: 660  QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
            QVI+ VL ++T   PP  +                         N K   +KT       
Sbjct: 745  QVISTVLKNLT---PPGCL---------------------GLTVNGKSTTAKT------- 773

Query: 720  SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHT 777
                   + G  GEE              E  +++   +L++G+IDK Q   +  GLV+ 
Sbjct: 774  -------MWGPGGEE--------------EGDVVVKDGELLQGIIDKKQIGPSSGGLVNA 812

Query: 778  VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKR 837
            + E YG   AG  LS L RL T  L M  F+CGV+DL+  +  E +R+  L G++ IG  
Sbjct: 813  IYEAYGHAVAGKFLSVLGRLLTKLLHMRAFSCGVEDLIFTQKGEEDRRQALAGAQSIGLE 872

Query: 838  VHLEALELEDGAEI-DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELL 896
            V  + + L D     +  +L+  +E  +R   D A  +   ++T+      SS V  + +
Sbjct: 873  VSAKYVGLADQKPTGEDRELQQRLEDVLR---DDAKQHGLDQVTNNATGKISSGVSEKCM 929

Query: 897  SEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPW 956
              GL KP  KN +  MTTSGAKGSKVN   IS  LGQQ LEG+RVP MVSGKTLP F P+
Sbjct: 930  PAGLAKPFPKNQMQTMTTSGAKGSKVNVNLISCALGQQVLEGRRVPIMVSGKTLPCFKPF 989

Query: 957  DWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKI 1016
            +   RAGG+I+DRFLTG+RPQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E LK+
Sbjct: 990  ESNVRAGGYIVDRFLTGIRPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKV 1049

Query: 1017 SYDYSVRDA-DGSIVQFCYGEDGVDVHQTSFISKF-----------------DALAARER 1058
             YD SVR+  DGSIVQF YGEDG+D+ +  ++S F                 D +A+   
Sbjct: 1050 EYDTSVRNTEDGSIVQFLYGEDGLDIGKAKYLSDFKFAAENYISLYNNLEMNDNMASLIS 1109

Query: 1059 GRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFL 1118
               +  NK  +K              Y+K +G L AS+  +   P A   +A   ++K L
Sbjct: 1110 EEAKEHNKAAEKK-------------YRK-TGDLGASDPALAVYPPA--RHAGSISEKLL 1153

Query: 1119 SNE------------------------MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSV 1154
            +                          ++K++F  +++ +++ S+ + GE VG++A QSV
Sbjct: 1154 ATSRSWVDTNTERLIKDKKHGIDGPRTVSKKNFNAILEMRYLRSIVETGEAVGVVAGQSV 1213

Query: 1155 GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            GEPSTQMTLNTFHLAG    NVTLGIPRL+EI+  A+ ++ TP +T  L
Sbjct: 1214 GEPSTQMTLNTFHLAGHAAKNVTLGIPRLREIVMTAATNLATPTMTLRL 1262


>gi|345562788|gb|EGX45801.1| hypothetical protein AOL_s00117g6 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1634

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/1251 (38%), Positives = 671/1251 (53%), Gaps = 155/1251 (12%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC      CPGH GHI L  PVY+P+             FF   + A           
Sbjct: 63   CSTCNLSNENCPGHVGHISLPTPVYHPV-------------FFDQMYHAG---------- 99

Query: 61   LELIIKGD---IIAAKSLDLDLPSESSNPEDSDV----SNKSSCSMVTPRGNY-----DN 108
              LI + D   +I +  L       S+  +  DV      + + +++  R  Y       
Sbjct: 100  --LIHESDDIELIGSTKLHRSDHGLSTTTDVGDVVEDLEEEDTETVIRKRNRYVYKAIKL 157

Query: 109  VRNLKPQEWTSLQFAEAKLALLQ-FLK--IETTKCGNCKAKNPRISKPTFGWIHMNGMPH 165
             R +       +  A+A+ AL+  FLK  +   +C +CK  +P   K  +  I    + H
Sbjct: 158  NRKVGLGSTQIMAVAQARRALVHAFLKDMMGGRRCSSCKGVSPTYRKDGYSKIFQRPLSH 217

Query: 166  ADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSG 225
             + +   + G  +    +  +  K   A S+    +      T P  +  AA        
Sbjct: 218  KEQQQMALLGLKVKHCLA--KLAKQNPAHSEAQKQKGGENAETRPIVE--AANDSDVEME 273

Query: 226  AVPSGFKKQKDLFSGPLLPS-DVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFL 284
             V +  ++ ++  SG  LP  +V   +  L++NE E+ S I    +    +    ++FFL
Sbjct: 274  EVDTLSEEPENPKSGTFLPPMEVLQRLTHLFKNESEILSLIYRNSRSRKAQDGNAAMFFL 333

Query: 285  GVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL------ANAYVNQPDNAKVIV 338
              V+VPP  FR PS  G+ + E+PQ  +L K+L ++I +      A + +++      ++
Sbjct: 334  QAVIVPPTPFRAPSFAGNELNENPQNSILKKILDSSIRIRDINDAARSDLDKHSAFGKLI 393

Query: 339  ARWMNLQQSVNVLFD---GKNAAGQRDMAS--GICQLLEKKEGLFRQKLMGKRVNYACRS 393
              ++NLQ +VN+  D   G  A   R  A+  GI Q+LEKKEGLFR+ +MGKRVNYA RS
Sbjct: 394  REFINLQDNVNLFIDSTKGGGAVSARQAAAIIGIKQVLEKKEGLFRKNMMGKRVNYAARS 453

Query: 394  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLST 453
            VISPDP +  NEIG+P  FA +LTYPE VTP NV  +R +++NG  I PGATH  ++   
Sbjct: 454  VISPDPNIETNEIGVPLVFAKKLTYPEPVTPHNVDVMRQAVMNGPNIWPGATHIENENGR 513

Query: 454  M-RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLH 512
            + RLP + + R ++  +L T       P + +   F  K VYRHL++GD+V++NRQPTLH
Sbjct: 514  LQRLPLSAESRKALANQLLT-------PSEATLKSFN-KKVYRHLRNGDMVIMNRQPTLH 565

Query: 513  KPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQ 572
            KPS+M H  RVL  E T+RMHYANC+TYNADFDGDEMN+H PQ+E +RAEA  I N ++Q
Sbjct: 566  KPSMMGHKARVLPKENTIRMHYANCNTYNADFDGDEMNMHLPQNENARAEAQYIANTDSQ 625

Query: 573  YVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQR 632
            Y+ P++G PLR LIQDHIV +  +T++D+   R E+ +LL++S      +G+      +R
Sbjct: 626  YLVPTSGKPLRGLIQDHIVMSLHMTQRDSLFTRGEYQELLHASLRPEDKMGA-----AER 680

Query: 633  VLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 692
            +       ++LP  P + KP  LWTGKQ++T +L +I   RPP      G     F    
Sbjct: 681  I-------QLLP--PTVLKPVKLWTGKQIVTTILENI---RPP------GTTAISF---- 718

Query: 693  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL 752
                             SKT              V G    EK  E            ++
Sbjct: 719  ----------------TSKTK-------------VPGSSWAEKSEEG-----------EV 738

Query: 753  LIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
            ++ K     GV+DK+Q   + YG+VH+V ELYG   AG+ LS L RLFT  L M  F+CG
Sbjct: 739  VVSKGYFACGVLDKSQVGASAYGIVHSVHELYGPTIAGSFLSILGRLFTKLLHMRAFSCG 798

Query: 811  VDDLLILKDKERERKNHLHGSEEIGKRVHLEALEL-EDGAEIDPIKLKSEIEKAMRGGGD 869
            ++DL+     +  R+  L  +   G  V    +EL +D  +   I L S++E+ +R   D
Sbjct: 799  MEDLVFAPQGDHVRRKTLELAASAGTEVARGFVELAKDFVDPSSIILSSKLEEVLRN--D 856

Query: 870  AAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISS 929
                  D  M S+ ++ TS  VI   L   L+KP  KN +  MT SGAKGS VN  QIS 
Sbjct: 857  TKQQTLDSLMGSKGHEITSK-VIKLCLPNSLVKPFPKNQMQAMTVSGAKGSDVNASQISC 915

Query: 930  HLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREG 989
             LGQQ LEG+RVP M+SGKTLPSF P+D   RAGG++  RFLTG+RPQEYYFH MAGREG
Sbjct: 916  LLGQQVLEGRRVPVMISGKTLPSFAPFDPGLRAGGYVTGRFLTGIRPQEYYFHAMAGREG 975

Query: 990  LVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISK 1049
            L+DTAVKTSRSGYLQRCLIK +E ++  YD SVRD+DGS+VQF YGEDG+D+ + + +S 
Sbjct: 976  LIDTAVKTSRSGYLQRCLIKGMEGIRTHYDSSVRDSDGSLVQFLYGEDGIDIGKHAHLSD 1035

Query: 1050 FDALAARERG--RGRGRNKFCDKGSHTFVMGRNQEMI--YKKCSGQ---LDASNA----- 1097
            F   A          G     D+      M  ++E+   ++K       +D + +     
Sbjct: 1036 FTFHAKNHETYIEQLGCANLTDRLDFNTAMDYSKEVAKKFRKAGSSPITMDPAISVFPPG 1095

Query: 1098 -YIMELPDALKDNAEKFA----DKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQ 1152
             Y+  + +    + EKF     D+ LS++  K+ F  L+  K++ SL  PGE VG+LA Q
Sbjct: 1096 RYVGSVSEQFSGDLEKFVKENPDECLSDKREKKMFKNLMYLKYLRSLISPGEAVGILAGQ 1155

Query: 1153 SVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            S+GEPSTQMTLNTFHLAG    NVTLGIPRL+EI+  AS  I TP +T  L
Sbjct: 1156 SIGEPSTQMTLNTFHLAGHAAKNVTLGIPRLREIVMTASATIATPKMTLTL 1206


>gi|342320744|gb|EGU12683.1| DNA-directed RNA polymerase [Rhodotorula glutinis ATCC 204091]
          Length = 1782

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1063 (41%), Positives = 594/1063 (55%), Gaps = 178/1063 (16%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFI------------------SDMQQQGFGKKAGHSIFF 283
            + P +V+  + +L+ NE EL + I                  S  Q+QG    A   IFF
Sbjct: 357  VTPDEVRAHLRRLFANEQELVTLIYAPHGPLARASSSRIPRSSADQKQGGKPAASADIFF 416

Query: 284  LGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYV------NQPDNA--- 334
            + VV VPP +FR  S  GD V E+PQ  LL+ +L+ +I + +  V       QPD+    
Sbjct: 417  MDVVSVPPSRFRPASTMGDQVFENPQNSLLNNILRQSIVVRDLNVRLLQAQTQPDHPDLV 476

Query: 335  ------KVIVARW--------MNLQQSVNVLFD-GKNA--AGQRDMAS-GICQLLEKKEG 376
                  +V + R         ++LQ +VN + D GKN     Q  + + G+ QLLEKKEG
Sbjct: 477  GEDGKPRVTIERMTTMLYESLIDLQVTVNSMMDAGKNPMLVKQGKLPTPGVKQLLEKKEG 536

Query: 377  LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
            LFR+ +MGKRVNYA RSVISPD  +  NEIG+PP FA +LT+PE VT  N  +L+ ++IN
Sbjct: 537  LFRKNMMGKRVNYAARSVISPDVNIETNEIGVPPVFARKLTFPEPVTDHNYQQLKQAVIN 596

Query: 437  GAEIHPGATHY------LDKLSTMRLPPNKKMRISIGRKL----DTSRGAIVQPGKDSDN 486
            G   HPGA+        L  L  M L    + R +I  KL     ++ G  +      D 
Sbjct: 597  GPHQHPGASFVQMEDGNLISLDRMSL----EERTAIANKLLAPETSTAGQRLAASSRPDV 652

Query: 487  EFE-------GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 539
                       + VYRHLQDGD+V++NRQPTLHKPS+M H V+VLKGEKT+RMHYANC++
Sbjct: 653  GLPPTRTPQINRKVYRHLQDGDIVILNRQPTLHKPSMMCHRVKVLKGEKTIRMHYANCNS 712

Query: 540  YNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
            YNADFDGDEMN+HFPQ  +++AEA  I N +NQY+ P++G+PLR LIQDH+V+   LT K
Sbjct: 713  YNADFDGDEMNMHFPQSLIAQAEARMIANTDNQYLVPTSGNPLRGLIQDHVVAGVWLTNK 772

Query: 600  DTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
            DTF  RD++ QL+Y +    +    +TG           E  V  + PA+WKP P+WTGK
Sbjct: 773  DTFFTRDQYYQLIYGALRPEN---DYTG-----------EGTVKTVPPAVWKPRPMWTGK 818

Query: 660  QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
            QVI+ VL +I               P D     F +          KGK+          
Sbjct: 819  QVISTVLKNIQ--------------PADMCGIHFTS----------KGKV---------- 844

Query: 720  SGKKKEVVEGKPGEEKEAEKNKSKEKELSEE-KLLIYKNDLVRGVIDKAQF--ADYGLVH 776
                       PG         S     +EE ++L++  D++ G+IDKAQ   + +GLVH
Sbjct: 845  -----------PG---------SAWGVFAEEGEVLVHDGDMLTGIIDKAQIGASPFGLVH 884

Query: 777  TVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGK 836
            +V ELYG++TAG LLS LSRL T FLQ   F+C +DDL++      +R+  L    E G 
Sbjct: 885  SVYELYGASTAGKLLSILSRLLTKFLQTRAFSCRMDDLVLTAKGNHDRRRMLQTVNEKGL 944

Query: 837  RVHLEALELEDGAEIDPIK---LKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVIN 893
               L+   L      DP     L++ +E+ +R   D  +A  D  +  + N+ T + +I 
Sbjct: 945  SAALDYTGLASADRADPATADDLRNRLEEILR--DDYKLAGLDATVEGETNQVT-TQLIK 1001

Query: 894  ELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSF 953
              L  GL+KP   N +  MT SGAKGS VN  QIS  LGQQ LEG+RVP MVSGKTLPSF
Sbjct: 1002 TCLPNGLVKPFPHNNMQTMTVSGAKGSNVNASQISCLLGQQSLEGRRVPVMVSGKTLPSF 1061

Query: 954  HPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLEC 1013
              ++ APRAGGF+  RFLTG+RPQEYYFHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE 
Sbjct: 1062 KAFETAPRAGGFVAGRFLTGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEG 1121

Query: 1014 LKISYDYSVRDADGSIVQFCYGEDGVDV--------------HQTSFISKFDALAARERG 1059
            L++ YD++VR+AD S++QF YGED +DV              +  S IS+++   A ER 
Sbjct: 1122 LRVHYDHTVRNADQSVLQFHYGEDSLDVTKQKHLLQFEFAVRNMQSIISRYNPRDALERT 1181

Query: 1060 R-------GRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIME----------- 1101
                       +       +H  V+           SG +    A  +E           
Sbjct: 1182 NDVEEVLPDAMKKSLKKPDTHPPVLSLASP---STVSGAVSERYARAIEEYVKNPKQRLL 1238

Query: 1102 LPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQM 1161
             P   +D A+  A     + ++ + F  L+  +++ SL +PGE VGLLASQ VGEPSTQM
Sbjct: 1239 RPKKKRDMADWPAHIRRDDLVSIEHFRSLMNMRYMRSLVEPGEAVGLLASQGVGEPSTQM 1298

Query: 1162 TLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            TLNTFH AG G  NVTLGIPRL+EI+  AS+DIKTP +  P++
Sbjct: 1299 TLNTFHFAGHGAANVTLGIPRLREIVMTASQDIKTPTMNLPIV 1341



 Score = 69.7 bits (169), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 42/76 (55%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    F CPGHFGHI+L  PV++PL     + LL+  C +CH F     ++ K + +
Sbjct: 63  CSTCHLTSFECPGHFGHIELPAPVFHPLYMVQAFQLLRGTCTYCHRFLVGEVQLLKQIAR 122

Query: 61  LELIIKGDIIAAKSLD 76
           L L+  G +  A  LD
Sbjct: 123 LTLLEHGLVTHALELD 138


>gi|367055126|ref|XP_003657941.1| hypothetical protein THITE_2124200 [Thielavia terrestris NRRL 8126]
 gi|347005207|gb|AEO71605.1| hypothetical protein THITE_2124200 [Thielavia terrestris NRRL 8126]
          Length = 1722

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/1313 (36%), Positives = 675/1313 (51%), Gaps = 209/1313 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C+TC   Q  CPGH GHI+L VPVY+P+  +  Y LL+  C +CH F+  R E+ +    
Sbjct: 62   CRTCNLNQAQCPGHPGHIELPVPVYHPIFMDQAYRLLRAQCVYCHRFRLPRHEIHRYTCM 121

Query: 61   LELIIKGDIIAAKSLDLDLPSE---------------SSNPEDSDVSNKSSCSMVTPRGN 105
            L L+  G +  A+ +D   PSE               + + E  +  N    S +  R  
Sbjct: 122  LRLLQVGLLHEAQMIDAFSPSELGEQLKSMRLSDVPSAGDDEAEEEGNNVHESAIRAREA 181

Query: 106  YDNVRNLKPQEWTSLQF-----------AEAKLALLQ---FLKIETTKCGNCKAKNPRIS 151
            Y  VR++  +    +             AE + AL++    L ++  +C +C   +P   
Sbjct: 182  Y--VRHVLQEHGLHVNLGDIRKGKHEGAAEMRRALIKEFLALMVKDKRCRSCDGISPVYR 239

Query: 152  KPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLG------ASSDVDAPETHSF 205
            K     I    +   +  A    G    +  +   + K  G        +DVD+      
Sbjct: 240  KDRSVRIFERDLSDKEKAAMAQAGRKRSDALAISRKAKKHGDLTPDEGIADVDS------ 293

Query: 206  NGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGP-------------------LLPSD 246
                  ++D+A  R  +G G       +  D+                       L   +
Sbjct: 294  -----SSEDSAGERDSEGEG---EELDENGDVVMADAPAKAKPKKSKSAKPAQRFLNTME 345

Query: 247  VKDIIEKLWENEFELCSFISDMQQQGFGKKA-GHSIFFLGVVLVPPIKFRLPSKGGDSVM 305
            V   +E L+E E E+ S + + + +    K     +FF+  +LVPP ++R   + GD  +
Sbjct: 346  VHKRLELLFEKEQEVLSLLYNSKPRPRSSKPLTADMFFIRTLLVPPNRYRPEGRQGDGEV 405

Query: 306  EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR---------------WMNLQQSVNV 350
               Q   L K++ A   +      + ++     A                W  LQ +VN 
Sbjct: 406  TEAQQNSLYKMIIARASMVTQITREINSQTKETAEDEGRRTRDMSSLYQAWTELQDAVNS 465

Query: 351  LFDG-----KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNE 405
            L D      + AAG+R+   GI Q LEKKEGLFR+ +MGKRVN+A RSVISPDP +  NE
Sbjct: 466  LVDRDKNPIQGAAGKRN-EEGIKQKLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNE 524

Query: 406  IGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM--R 463
            IG+PP FA +LTYPE VT  N   L+ ++ING +  PGA    ++   +     K +  R
Sbjct: 525  IGVPPVFARKLTYPEPVTSHNFKDLQQAVINGVDKWPGAAAIENENGQIINLRTKSLEDR 584

Query: 464  ISIGRKLDTSRGAIVQPGKDSDNEFEG---KMVYRHLQDGDVVLVNRQPTLHKPSIMAHV 520
            +++  +L    G          N F G   K V+RHL +GDVVL+NRQPTLHKPSIM H 
Sbjct: 585  VALANQLLAPTG----------NNFSGLRNKKVHRHLTNGDVVLMNRQPTLHKPSIMGHR 634

Query: 521  VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGD 580
            VRVL GEKT+RMHYANC+TYNADFDGDEMN+HFPQ+E++RAEA  + + ++QY+  + G+
Sbjct: 635  VRVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPQNEIARAEALQLADTDHQYISGTAGN 694

Query: 581  PLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQ 640
            PLR LIQDH+  +  L  KD FL++ ++ QL+YS+    SG  +     G+R+       
Sbjct: 695  PLRGLIQDHLSVSVALCSKDVFLDQGDYHQLVYSALRPESGHIT-----GERI------- 742

Query: 641  EVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSD 700
            E++P  PA+ KP P WTGKQVIT +L +I   RP                          
Sbjct: 743  ELVP--PAVIKPIPRWTGKQVITTILKNI---RP-------------------------- 771

Query: 701  RKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLV 760
                     +    +  + S K K    G+  EE E               ++    + +
Sbjct: 772  ---------ADCGDLWMNGSAKIKSRSWGEASEEGE---------------VMFRDGEFI 807

Query: 761  RGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILK 818
             G++DK+Q   +D G +H V E+YG + AG LLS + RL T +L M  FTCG+DDL +  
Sbjct: 808  CGILDKSQLGPSDGGFIHAVHEVYGPSVAGKLLSGMGRLLTRYLAMVAFTCGMDDLRMTP 867

Query: 819  DKERERKNHLHGSEEIGKRVHLEALELEDGAEI--DPIKLKSEIEKAMRGGGDAAVAYFD 876
              E++RK  +  +  IG +V  + + LE+      DP+ L+  +E+ +R   D      +
Sbjct: 868  QGEKDRKETIKAASHIGLQVAAKYVSLEEQKPTSDDPVLLE-RLEEVLR--DDKKQEGLE 924

Query: 877  MKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
            + +TSQ     S+ +    L  GL K   KN +  MT SGAKGS VN   IS +LGQQ L
Sbjct: 925  L-LTSQECAKLSTEITRLCLPAGLEKQFPKNHMQSMTISGAKGSPVNANLISCNLGQQVL 983

Query: 937  EGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVK 996
            EG+RVP MVSGKTLPSF P+D   RAGG+I++RFLTG+RPQEYYFH MAGREGL+DTAVK
Sbjct: 984  EGRRVPVMVSGKTLPSFKPFDTDVRAGGYIVNRFLTGIRPQEYYFHHMAGREGLIDTAVK 1043

Query: 997  TSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAAR 1056
            TSRSGYLQRCLIK +E L++SYD SVRD+DG++VQF +GEDG+D+ +  +++ F+    R
Sbjct: 1044 TSRSGYLQRCLIKGMEGLRVSYDSSVRDSDGTVVQFLFGEDGIDISKQKYLNDFE-FVLR 1102

Query: 1057 ERGRGRGRNKFCDKGSHTF--------------VMGRNQEMIYKKCSGQLD-------AS 1095
                   + ++ + G+                 +  RN        + +LD        S
Sbjct: 1103 NLDSQLPQIRYHEPGTQALFEHKDEVIKRMKSAIRSRNSRNPLDPVASELDPTAFAFATS 1162

Query: 1096 NAYIMELPDALKDN-----AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLA 1150
              +  +L + +K N      EK   +     + ++   K+   K++ SL +PGE VG++A
Sbjct: 1163 EKFFSKLTEYVKTNKDGLIKEKKGPESQKGLITRKTAEKIFAAKYLRSLVEPGEAVGIVA 1222

Query: 1151 SQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
             QSVGEPSTQMTLNTFHLAG    NVTLGIPRL+EIL  AS  I TP +T  L
Sbjct: 1223 GQSVGEPSTQMTLNTFHLAGHSARNVTLGIPRLREILMTASAKISTPSMTLVL 1275


>gi|328871266|gb|EGG19637.1| RNA polymerase I [Dictyostelium fasciculatum]
          Length = 1662

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/1281 (36%), Positives = 670/1281 (52%), Gaps = 216/1281 (16%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG     CPGHFGHI+L +PVYNP+LF  +  + +  C  CH FK  +  + + + +
Sbjct: 65   CVTCGDHYLRCPGHFGHIELSLPVYNPVLFPTMIKIFQNTCLECHTFKHGKIVINEFIEE 124

Query: 61   LELIIKGDIIAAKSLDL-----------------DLPSESSNPEDSDVSNKSSCSMVTPR 103
            L+++  GD++ A+ L                   DL ++ S+ +D++ ++++    V   
Sbjct: 125  LKVLYTGDVVKARDLRERHLTRRAAGQKKIDGLEDLRADDSDDDDNNNNHRAPMD-VDKS 183

Query: 104  GNYDNVRNLKPQEWT---------SLQFAEAKLALL-QFLKIE---TTKCGNCKAKNPRI 150
            G+    +N +  E           S  F   +  +L +F+KI    T +C NC A +P I
Sbjct: 184  GDDSEYKNYRVDEEIEGPIVNREKSQHFESMRRDILREFVKIASSATCRCANCGAFSPAI 243

Query: 151  SKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFP 210
                     M  MP    +    +       FS   EE               S +GT+ 
Sbjct: 244  RNGEPSKSKMFIMPLGKEQFKSNKTNKKKTNFSSVSEE---------------SIHGTWY 288

Query: 211  GTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQ 270
               +      Q+    +    K+  DL  G + P+   D + K                +
Sbjct: 289  SPWEL-----QRQLKKLFKKEKEVLDLLFGEVRPTGAVDPVTK----------------K 327

Query: 271  QGFGKKAGHSIFFLGVVLVPPIKFRLPS----KGGDSVMEH------PQTVLLSKVLQAN 320
            + FG+++    FFL    V P + R P+    +  +S M +          +++K+L A 
Sbjct: 328  RVFGRESSIDSFFLTAFPVLPSRARPPNFMNNRRSESTMNNHYRGIVTHNRMITKLLDAK 387

Query: 321  IYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNA--AGQRDMASGICQLLEKKEGLF 378
                     + ++AK +V     LQ  +N ++D   A    +  +A+G+ Q+LEKKEGLF
Sbjct: 388  ---------EDESAKSMVTNVCELQMHINNMYDNSKAQKTSRSVLAAGVKQILEKKEGLF 438

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRVNYA R+VISPD  L  NE+G+P YFA  LT+P+ VT +N  ++  ++ING 
Sbjct: 439  RKHMMGKRVNYAARTVISPDISLETNEMGVPQYFARTLTFPQPVTHFNYQQMAQAVINGP 498

Query: 439  EIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP---GKDSDNEFEGKMVYR 495
            + +PGA +  D+             I++ ++   +R A+ +     K +      K VYR
Sbjct: 499  DNYPGANYIEDE---------DGFYINLAKETHENRVALSKTLLTIKPTSPHGTTKKVYR 549

Query: 496  HLQDGDVVLVNRQPTLHKPSIMAHVVRVL-KGEKTLRMHYANCSTYNADFDGDEMNVHFP 554
            HL  GD VL NRQPTLHKP IM H V+VL K EKTLRMHY NCSTYNADFDGDEMN+HFP
Sbjct: 550  HLLTGDFVLANRQPTLHKPGIMGHRVKVLGKQEKTLRMHYCNCSTYNADFDGDEMNIHFP 609

Query: 555  QDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYS 614
            Q   + AE   I   N QY+ P  G PLR LIQDHI++  LLTK+DT   R +F  +LY+
Sbjct: 610  QSFHAAAEIREIAANNFQYLGPRAGVPLRGLIQDHILTGVLLTKRDTLFTRAQFQAILYA 669

Query: 615  SGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRP 674
            S                   I+R    V P  PAI KP P WTGKQ+I+A LNH+T GR 
Sbjct: 670  SLWG----------------INRDHPIVTP-QPAILKPVPQWTGKQLISAALNHLTIGRV 712

Query: 675  PFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEE 734
            P  +E   K+P   +                K  L  T   H                  
Sbjct: 713  PLTLESPSKIPTKLW---------------GKHGLDVTRDSH------------------ 739

Query: 735  KEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLS 792
                             ++I +N++V G++DK QF  +  GLVHT  E+Y  NTAG+LL+
Sbjct: 740  -----------------VIIRQNEMVAGILDKGQFGASGNGLVHTCYEMYDPNTAGSLLT 782

Query: 793  ALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIG-----KRVHLEALELED 847
             L R+FT +L   GFTC V+DLLI   +E  R+N L  + E G     K V     +  +
Sbjct: 783  LLGRMFTFYLSTRGFTCSVEDLLINAKEEDYRRNELAKANEEGLDVAAKFVGQRKYDKLE 842

Query: 848  GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKN 907
             A +  + L+ E E          V   D  +   LN++T S +I+ L+  G  KP  +N
Sbjct: 843  TARLMNVNLREERE----------VGRLDGMLKKALNQYT-SKIIDTLIPGGQRKPFPEN 891

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
              SLMT SGAKGS VNF Q+S  LGQQELEGKRVPRMVSGKTLP+F P+D + RAGGFI+
Sbjct: 892  NFSLMTVSGAKGSVVNFSQVSCLLGQQELEGKRVPRMVSGKTLPAFEPFDPSARAGGFIM 951

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
            DRFLTG+RPQ+Y+FHCMAGREGL+DTAVKT+RSGYLQRC+IK+LE + + YD +VRDADG
Sbjct: 952  DRFLTGVRPQDYFFHCMAGREGLIDTAVKTARSGYLQRCIIKHLEGITVQYDNTVRDADG 1011

Query: 1028 SIVQFCYGEDGVDVHQTSFISKFDALAARER--------------GRGRGRNKFCDKGSH 1073
            S++QF YGED +++ +  +++ F   A                   R    +++ DK  H
Sbjct: 1012 SVIQFNYGEDSLEITKRQYLTNFTVAAENYELLKSQFAYDELVPAMRNVKVSEYNDK-LH 1070

Query: 1074 TFV-------MGRNQEM---IYKKCSGQLD---ASNAYIMELPDALKDNAEKFAD--KFL 1118
            T +       +G+  ++   +  K +   D    S A++ +L   +  N +      K  
Sbjct: 1071 TQLAEKKAGTLGKTAQLLDPVMAKFNPAADLGCVSEAFMTDLNKYIDANPQGLIQTAKNK 1130

Query: 1119 SNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTL 1178
              ++ ++DF  L+   +  S+  PGE VGLL +QS+GEPSTQMTLNTFHLAGRGE NVTL
Sbjct: 1131 KGKIPEKDFRNLMFLYYNRSMVSPGESVGLLCAQSIGEPSTQMTLNTFHLAGRGEANVTL 1190

Query: 1179 GIPRLQEILTIASKDIKTPVI 1199
            GIPRL+EI+  AS++  TP++
Sbjct: 1191 GIPRLREIIMTASQNPSTPLM 1211


>gi|348688967|gb|EGZ28781.1| hypothetical protein PHYSODRAFT_322406 [Phytophthora sojae]
          Length = 1813

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1113 (39%), Positives = 605/1113 (54%), Gaps = 159/1113 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q Q  CPGH GHI+L VPVYNP+LF  +  LLKR CF CH F+ +         K
Sbjct: 66   CPTCHQTQKECPGHLGHIELPVPVYNPVLFGQMLNLLKRKCFTCHKFRVASARSRVVRVK 125

Query: 61   LELIIKG---------DIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRN 111
            + L+  G         +++  ++   D P + +      + ++     ++   N  N + 
Sbjct: 126  ILLLDNGFENEAAQLSELLEQRNGVEDEPPQRTFQRQQAILDEYERLALSKSANNTNGKT 185

Query: 112  --LKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIR 169
              L+P    + +    KLA+ +FLK    KC NC A +P I +     I + G+     +
Sbjct: 186  QLLRPLPRLA-EVTREKLAI-EFLKGMKNKCENCGAISPAIRQDANAKIFLKGLSARSRK 243

Query: 170  ANLIRGCNLG-----ETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGS 224
             N  R  NL      +T  G   +    + S  D+         +  T+D+++R      
Sbjct: 244  VN--RSKNLTVTSALDTIRGNVSDNGDESMSGDDSESEMENEDKYATTEDSSSR------ 295

Query: 225  GAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSI--- 281
                          S  L P +V+  ++ +W+NE  L   +   +    G+  G      
Sbjct: 296  --------------SKYLPPLEVQSQLQLMWQNEDGLMELLYGDRNIASGRVTGRKADGW 341

Query: 282  --FFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVL-------QANIYLANAYVN--- 329
              FFL V+ V P +FR P   GD   EH Q   LSK++       Q++ Y   A      
Sbjct: 342  RKFFLNVIPVAPSRFRPPVFMGDKQFEHAQNSHLSKIMTMSESIVQSDYYKRQAATTSDE 401

Query: 330  ------QPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLM 383
                  Q  N    +A W  LQ +VN+L D   A    D+A GI Q++EKKEGLFR+ +M
Sbjct: 402  DDAEKEQQVNLSRKLALWTELQTAVNLLVDSSKAKPGTDVAQGIKQVIEKKEGLFRKHMM 461

Query: 384  GKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPG 443
            GKRVNYA RSVISPDPY++ ++IG+P  FA  LTYP+ VTPWNV ++R  +ING ++HPG
Sbjct: 462  GKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVINGPDVHPG 521

Query: 444  ATHYLDKLSTMRLPPNKK---MRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDG 500
            A ++++  +   +  +K+    R +I + L T   +     K+       K V+RHL+ G
Sbjct: 522  A-NFMESENGRLIDLSKRTPHQREAISKTLLTRSASAQGTSKNG-----VKRVWRHLKTG 575

Query: 501  DVVLVNRQPTLHKPSIMAHVVRVLKGEK--TLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
            DVVL+NRQPTLHKPSIMAH  RVL   K  T+RMHYANC+T+NADFDGDEMN+HFPQ+E+
Sbjct: 576  DVVLMNRQPTLHKPSIMAHTTRVLTNPKMQTIRMHYANCNTFNADFDGDEMNMHFPQNEL 635

Query: 559  SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
            +RAEAYNI   +NQY+ P++G PLR LIQDH+ S   LT++DTFL +D + QLLY++  S
Sbjct: 636  ARAEAYNIACNDNQYIVPTDGSPLRGLIQDHVDSGVKLTQRDTFLTKDMYMQLLYNAWAS 695

Query: 619  SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVV 678
                G           + ++  E +P  PAI KP+PLWTGKQVIT+VL  +T+G PP  +
Sbjct: 696  MEDAG-----------VEKAHIETVP--PAILKPQPLWTGKQVITSVLKLLTKGLPPLNL 742

Query: 679  ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 738
            +   K+  D +                              S   + +V  + GE     
Sbjct: 743  DSKAKIKGDLY-----------------------------GSANNEHIVIIRDGE----- 768

Query: 739  KNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSR 796
                                L++GV+DK+QF    YG+VH   E+YG+  A   LSAL R
Sbjct: 769  --------------------LLQGVLDKSQFGASMYGMVHACYEVYGARIAADFLSALGR 808

Query: 797  LFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVH------LEALELEDGAE 850
            LFT +LQ  G TC ++DL + K  E+ R+  +  SE +G+  +       E LE +  +E
Sbjct: 809  LFTCYLQFAGHTCAMEDLTLNKPAEKRRRKLVEDSEVLGEEAYAEFAGLTELLEKKRASE 868

Query: 851  IDPIKLKS------EIEKAMR---GGGDAA--VAYFDMKMTSQLNKHTSSSVINELLSEG 899
             D  K +       +I + MR    G DA       D  M   ++  ++S +I   L  G
Sbjct: 869  KDGKKRRMNEGERVQIRERMRTLLSGPDAENNAKALDAHMMGCVHG-SNSDIIKTCLPSG 927

Query: 900  LLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWA 959
              K   KN  SLM  +GAKGS VN  QI+  LGQQ LEG+RVP + SG++LPSF P+D A
Sbjct: 928  QSKAFPKNNFSLMVLTGAKGSMVNHSQITCGLGQQALEGRRVPILCSGRSLPSFEPFDPA 987

Query: 960  PRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYD 1019
            PRAGG++ DRFLTGLRPQEYY HCMAGREGLVDTAVKTSRSGYLQRCLIK+LE L++ YD
Sbjct: 988  PRAGGYVTDRFLTGLRPQEYYHHCMAGREGLVDTAVKTSRSGYLQRCLIKHLEDLQVGYD 1047

Query: 1020 YSVRDADGSIVQFCYGEDGVDVHQTSFISKFDA 1052
            ++VR++DG ++QF YGEDG+D  Q++ +S  DA
Sbjct: 1048 HTVRNSDGGVIQFLYGEDGIDPVQSAMLSGKDA 1080



 Score =  100 bits (248), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 59/77 (76%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            F  LV   ++ S+  PGE VG+LA+Q +GEPSTQMTLNTFHLAG G  NVTLGIPRL+EI
Sbjct: 1303 FQLLVWVNYLRSMCAPGENVGILAAQGIGEPSTQMTLNTFHLAGHGAANVTLGIPRLREI 1362

Query: 1187 LTIASKDIKTPVITCPL 1203
            +  AS+ + TP++T PL
Sbjct: 1363 IMTASQKMSTPMMTIPL 1379


>gi|429853059|gb|ELA28158.1| DNA-directed RNA polymerase i subunit rpa1 [Colletotrichum
            gloeosporioides Nara gc5]
          Length = 1704

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/1289 (37%), Positives = 668/1289 (51%), Gaps = 175/1289 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC   Q  CPGH GHI+L VPVY+P+  + +  LL+  C +C  F+   RE  +   K
Sbjct: 62   CATCNLNQSSCPGHAGHIELPVPVYHPIFLDQVLRLLRSQCAYCKGFRMRHRESNRFSCK 121

Query: 61   LELIIKG--------DIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNV--R 110
            L L+  G        D I  +   L +P   ++  DS+   + + ++    G  +    +
Sbjct: 122  LRLLQHGLLHEAHLVDAIGEELKSLAMPGVPTD-YDSEAEEEGTSTVDNVIGAREAFVRQ 180

Query: 111  NLKPQEWTSLQFA--------EAKLALLQFLKIETTK---CGNCKAKNPRISKPTFGWIH 159
            +LK  + +  + +        E +  L++   ++ TK   C NC   +P   K  F  I 
Sbjct: 181  SLKAHKLSLGEVSKGKHEGSIEMRRELIKEFMVQITKPRKCDNCGGISPAYRKDRFVKIF 240

Query: 160  MNGMPHADIRANLIRGCNLGETFSG-----------GEEEKDLG-ASSDVDAPETHSFNG 207
               +   D+     R  ++ ++ +            G +  D G A  D+ + E +    
Sbjct: 241  EKALSERDLAHMAQRNLHMKDSMATTAMTSKSKTTRGSDHADEGVADVDLASSEENDVEM 300

Query: 208  TFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISD 267
                + D   R   KG     +    Q+   S      +V+  + +L+E E E+ S I +
Sbjct: 301  RDASSSD-EHRPMDKGDEDATNVSPGQQRYISA----MEVRARLRELFEKEQEIMSLIYN 355

Query: 268  MQQQGFGKKAGH---SIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA 324
               +   KK       +FFL  +LVPP KFR  ++ GDS+ E  Q  L   +L+  + +A
Sbjct: 356  --SKPVTKKVAKITADMFFLRTILVPPNKFRPEARTGDSISEAQQNSLYKNILRNCVSIA 413

Query: 325  NAYVNQPDNAKVIVAR--------WMNLQQSVNVLFD-GKN----AAGQRDMASGICQLL 371
              + N     +   AR        W  LQ+SVN L D  KN    AA +R+   GI Q L
Sbjct: 414  RIHQNVGGTDQYGRARDISDLHQIWTELQESVNSLIDKSKNPVQGAAAKRN-EDGIKQKL 472

Query: 372  EKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLR 431
            EKKEGLFR+ +MGKRVN+A RSVISPDP +  NEIG+PP FA +LTYPE VT  N   ++
Sbjct: 473  EKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFRDMQ 532

Query: 432  DSIINGAEIHPGAT--HYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE 489
             ++ING +  PGA    Y +         +   R+S+  +L       + P  +  +  +
Sbjct: 533  QAVINGVDKWPGAAAIEYENGQIVNLRSKSTDDRVSLANQL-------LAPTNNQMSGVK 585

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
             K VYRHL +GDVVL+NRQPTLHKPSIM H VRVL GEKT+RMHYANC+TYNADFDGDEM
Sbjct: 586  SKKVYRHLTNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEM 645

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+HFPQ+EV+RAEA  I + ++QY+  + G PLR LIQDH+  +  L  KDTF +RD + 
Sbjct: 646  NMHFPQNEVARAEALQIADTDHQYLSGTAGKPLRGLIQDHLSVSVALCNKDTFFDRDSYQ 705

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
            QL+YS+    SG           +L  R E     ++  I +    WTGKQV+T +L +I
Sbjct: 706  QLIYSALRPESG----------HILGERIELIPPAIIKPIPR----WTGKQVVTTILKNI 751

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK-LSKTNKMHKDKSGKKKEVVE 728
               +PP                            N +G  ++  +++  ++ GK  E   
Sbjct: 752  ---KPP----------------------------NGEGLWMTGKSQVKGEQWGKGSE--- 777

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNT 786
                                E  +L      + G++DKAQ   +  GL+H + E+YG   
Sbjct: 778  --------------------EGTVLFQDGQFLSGILDKAQLGPSSGGLIHAIHEIYGPAV 817

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE 846
            AG LLS + RL T +L M  FTCG+DDL +    E  RK  L  ++ IG  V    + LE
Sbjct: 818  AGKLLSGIGRLLTRYLNMRAFTCGMDDLRLTPQGEVSRKETLKAAKGIGLEVAARYVSLE 877

Query: 847  DG--AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPT 904
            D      DP +L + +E+ MR   D+     DM M +Q +   SS V    L  GL+K  
Sbjct: 878  DNKPGSDDP-ELLTRLEEVMR--DDSKQEGLDMLM-NQSSAKVSSMVTAACLPVGLVKQF 933

Query: 905  GKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGG 964
             KN +  MTTSGAKG +VN   IS +LGQQ LEG+RVP MVSGK+LP F P++   RAGG
Sbjct: 934  PKNQMQSMTTSGAKGGQVNANLISCNLGQQVLEGRRVPLMVSGKSLPCFRPFETDVRAGG 993

Query: 965  FIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD 1024
            +I+ RFLTG+RPQEYYFH MAGREGL+DTAVKTSRSGYLQRC+IK +E L +SYD +VRD
Sbjct: 994  YIVQRFLTGIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCIIKGMEGLTVSYDSTVRD 1053

Query: 1025 ADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMI 1084
            ADG++VQ  YGEDG+D  +  +++ F     R  G    +  F  +    F   ++  + 
Sbjct: 1054 ADGTLVQCLYGEDGLDPTKQKYLTDF-GFVLRNIGSETAQLNFGSEFKDRFAGNKDDVLK 1112

Query: 1085 YKKCS---GQLDAS--------------------------NAYIMELPDALKDNAEKFAD 1115
            + K +    ++D +                          + YI    D L  +  K   
Sbjct: 1113 HMKSAIKHAKVDIAAKDPIISLVNPARVAFATSEQFYEKMSQYIKNNEDGLIRDKSKDVS 1172

Query: 1116 KFLSNEMAKQDFLKLV-KHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEM 1174
              ++     +   +LV   K++ SL + GE VG++A QSVGEPSTQMTLNTFHLAG    
Sbjct: 1173 GLINAPAVNRKSAELVLAAKYMRSLVEAGEGVGIVAGQSVGEPSTQMTLNTFHLAGHSAK 1232

Query: 1175 NVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            NVTLGIPRL+EIL  AS+ I TP +T  L
Sbjct: 1233 NVTLGIPRLREILMTASRSISTPSMTLLL 1261


>gi|301118334|ref|XP_002906895.1| DNA-directed RNA polymerase I subunit RPA1, putative [Phytophthora
            infestans T30-4]
 gi|262108244|gb|EEY66296.1| DNA-directed RNA polymerase I subunit RPA1, putative [Phytophthora
            infestans T30-4]
          Length = 1811

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1130 (39%), Positives = 613/1130 (54%), Gaps = 176/1130 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFK-ASRREVEKCVR 59
            C TC Q Q  CPGH GHI+L VPVYNP+LF  +  LLKR CF CH F+ AS R   + VR
Sbjct: 66   CPTCHQTQKECPGHLGHIELPVPVYNPVLFGQMLNLLKRKCFTCHKFRVASAR--SRVVR 123

Query: 60   KLELIIK----------GDIIAAKSLDLDLPSESSNPEDSDVSNKS-----SCSMVTPRG 104
               L++           G+++  ++   D P + +      + ++      S S+ +  G
Sbjct: 124  VKILLLDNGFDNEAGQLGELLEQRNGVEDEPPQRTFQRQQAILDEYERLALSKSITSTNG 183

Query: 105  NYDNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMP 164
                +R L P+     +    KL +++FLK    KC NC A +P I +     I + G+ 
Sbjct: 184  KTQLLRPL-PR---VAEVTREKL-VIEFLKSMKNKCENCGAISPAIRQDANAKIFLKGLS 238

Query: 165  HADIRANLIRGCNLG-----ETFSGG-EEEKDLGASSDVDAPETHSFNGTFPGTQDTAAR 218
                + N  R  NL      +T  G   + KD   + D    E      T+  T+D+++R
Sbjct: 239  ARSRKVN--RSKNLTVTSALDTIRGNVSDNKDENMNGDDSESELEDDEDTYAATEDSSSR 296

Query: 219  RHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAG 278
                                S  L P +V+  ++ +W+NE  L   +   +    G+ +G
Sbjct: 297  --------------------SKFLPPLEVQSQLQLMWQNEDGLMEMLYGDRNIASGRVSG 336

Query: 279  HS-----IFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVL-------QANIYLANA 326
                    FFL V+ V P +FR P   GD   EH Q   LSK++       Q++ Y   A
Sbjct: 337  RKPDGWRKFFLNVIPVAPSRFRPPVFMGDKQFEHAQNSHLSKIMTYSESIVQSDYYKRQA 396

Query: 327  YVNQPD---------NAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGL 377
                 +         N    +A W  LQ +VN+L D   A    D+A GI Q++EKKEGL
Sbjct: 397  ATTSDEDDAEKEEQVNLSRKLALWTELQNAVNLLVDSSKAKPGTDVAQGIKQVIEKKEGL 456

Query: 378  FRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIING 437
            FR+ +MGKRVNYA RSVISPDPY++ ++IG+P  FA  LTYP+ VTPWNV ++R  +ING
Sbjct: 457  FRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVING 516

Query: 438  AEIHPGATHYLDK----LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMV 493
             ++HPG+     +    +   +  P+++  IS   K   +R A  Q    S N    K V
Sbjct: 517  PDVHPGSNFVESENGRLIDLSKRTPHQREAIS---KTLLTRSASAQ--GTSKNRV--KRV 569

Query: 494  YRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK--TLRMHYANCSTYNADFDGDEMNV 551
            +RHL+ GDVVL+NRQPTLHKPSIMAH  RVL   K  T+RMHYANC+T+NADFDGDEMN+
Sbjct: 570  WRHLKTGDVVLMNRQPTLHKPSIMAHTARVLTNPKMQTIRMHYANCNTFNADFDGDEMNM 629

Query: 552  HFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL 611
            HFPQ+E++R+EAYNI + +NQY+ P++G PLR LIQDH+ S   LT++DTFLN+D + QL
Sbjct: 630  HFPQNELARSEAYNIASNDNQYIVPTDGSPLRGLIQDHVDSGVKLTQRDTFLNKDMYMQL 689

Query: 612  LYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITR 671
            LY++  S    G           + ++  E +P  PAI KPEPLWTGKQVIT+VL  +T+
Sbjct: 690  LYNAWASMEDSG-----------VEKAHIETVP--PAILKPEPLWTGKQVITSVLKLLTK 736

Query: 672  GRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKP 731
            G PP  ++   K+  D +                              S   + VV  + 
Sbjct: 737  GLPPLNLDSKAKIKGDLY-----------------------------GSANNEHVVIFRD 767

Query: 732  GEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGT 789
            GE                         L++GV+DK+QF    YG+VH   E+YG+  A  
Sbjct: 768  GE-------------------------LLQGVLDKSQFGASMYGMVHACYEVYGARIAAD 802

Query: 790  LLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED-- 847
             LSAL RLFT +LQ  G TC ++DL +    E+ R+  +  SE +G+  + E   L +  
Sbjct: 803  FLSALGRLFTCYLQFAGHTCAMEDLTLNIAAEKRRQKLVKDSEVMGEEAYAEFAGLTELL 862

Query: 848  -----GAEIDPIKLKSEIEKA-----MR---GGGDA--AVAYFDMKMTSQLNKHTSSSVI 892
                 G +    +  +E E+A     MR    G DA       D  M   ++  ++S +I
Sbjct: 863  EKKRAGEKAGKKRRMNEEERAQIRDRMRTLLSGPDADYNAKALDAHMMGCVHG-SNSDII 921

Query: 893  NELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPS 952
               L  G  K   KN  SLM  +GAKGS VN  QIS  LGQQ LEG+RVP + SG++LPS
Sbjct: 922  KTCLPSGQSKAFPKNNFSLMVLTGAKGSMVNHSQISCGLGQQALEGRRVPILCSGRSLPS 981

Query: 953  FHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 1012
            F P+D APRAGG++ DRFLTGLRPQEYY HCMAGREGLVDTAVKTSRSGYLQRCLIK+LE
Sbjct: 982  FEPFDPAPRAGGYVTDRFLTGLRPQEYYHHCMAGREGLVDTAVKTSRSGYLQRCLIKHLE 1041

Query: 1013 CLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS----KFDALAARER 1058
             L + YD++VR++DG ++QF YGEDG+D  Q++ +S    +FD  A   R
Sbjct: 1042 DLNVGYDHTVRNSDGGVIQFLYGEDGIDPVQSAMLSGKDTQFDFQAMNHR 1091



 Score =  100 bits (249), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 59/77 (76%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            F  LV   ++ S+  PGE VG+LA+Q +GEPSTQMTLNTFHLAG G  NVTLGIPRL+EI
Sbjct: 1302 FQLLVWVNYLRSMCAPGENVGILAAQGIGEPSTQMTLNTFHLAGHGAANVTLGIPRLREI 1361

Query: 1187 LTIASKDIKTPVITCPL 1203
            +  AS+ + TP++T PL
Sbjct: 1362 IMTASQKMSTPMMTIPL 1378


>gi|452981607|gb|EME81367.1| hypothetical protein MYCFIDRAFT_64562 [Pseudocercospora fijiensis
            CIRAD86]
          Length = 1625

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/1285 (36%), Positives = 670/1285 (52%), Gaps = 184/1285 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG +   CPGH GHI+L VP Y+P  F+ +  LL+  C +C   K  R  V + + K
Sbjct: 62   CATCGLKNPQCPGHPGHIELPVPCYHPTFFDQILRLLRGACIYCGKLKMKRILVTRFICK 121

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNP-----------EDSDVSNKSSCSMVTPRGNYDNV 109
            L L+  G +   K L+      +S+P           ++SD  +  + ++      Y N 
Sbjct: 122  LRLVRHGLLKELKELEEKEIQAASDPTKAGAHVDQDEDESDAGDADTRALSLMLEQYVND 181

Query: 110  RNLKPQEWTSLQFAEAKLALLQFLKI---------ETTKCGNCKAKNPRISKPTFGWIHM 160
               + +   +L  A+++    +  +I         +  +CGNC   N    K  F  +  
Sbjct: 182  AIKRARRNGTLSTAKSEATNAERRRIIQDFMSNINKGKRCGNCGGINHSYRKDRFVKLFK 241

Query: 161  NGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDV----DAPETHSFNG-------TF 209
              +   D  A + +G    +     E  + L A        D  E  +  G         
Sbjct: 242  KPLSEKDHAAMVQKGLKARDPLV--EMRRKLRAERSRKRKRDEDEAPTIIGGDLEDAMVI 299

Query: 210  PGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQ 269
             G  +TAAR  +K          K +D +   L PS V   +++L+E++ E+ S +    
Sbjct: 300  DGAAETAARAQKK---------PKAQDEY---LNPSRVYAQLQQLFESDAEVLSLVYG-- 345

Query: 270  QQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGD-SVMEHPQTVLLSKVLQANIYLANAYV 328
             Q   K     +FFL  +LVPP +FR  ++ GD ++ E  +      +LQ N        
Sbjct: 346  -QASRKGLSADMFFLQTLLVPPNRFRPEARQGDGAISEALENGAYRSILQ-NCDTITEIQ 403

Query: 329  NQPDNAKVIVAR------------WMNLQQSVNVLFDGKNA----AGQRDMASGICQLLE 372
             +    K    R            W+ LQ++VN L D   +    A       GI Q LE
Sbjct: 404  RELSGGKPAETRYRERTYADLESAWLVLQENVNTLIDKDRSPLQGAANARTPDGIKQKLE 463

Query: 373  KKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRD 432
            KKEG+FR+ +MGKRVN+A R+VISPDP +  NEIG+PP FA++LTYPE VT WN  +L+ 
Sbjct: 464  KKEGMFRKYMMGKRVNFAARTVISPDPNIETNEIGVPPVFAVKLTYPEPVTQWNYEELQA 523

Query: 433  SIINGAEIHPGATHYLDK----LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNE- 487
            ++ NG  I PGA     +    +S  R  P +++ ++          +++ P    +   
Sbjct: 524  AVQNGPHIWPGAVAIESENGSVISLERKNPEERLALA---------NSLLAPSPSGNTRG 574

Query: 488  FEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGD 547
               K V+RHL +GD+V++NRQPTLHKPS+M H  RVL GEKTLRMHYANC+TYNADFDGD
Sbjct: 575  ARPKKVHRHLNNGDIVIMNRQPTLHKPSMMCHRARVLPGEKTLRMHYANCNTYNADFDGD 634

Query: 548  EMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDE 607
            EMN+HFPQ+E++RAEA +I + ++QY+  + G+PLR LIQDHI     LT +D F  R +
Sbjct: 635  EMNMHFPQNELARAEALSIADTDHQYLSGTAGNPLRGLIQDHISMCVWLTSRDMFFERGD 694

Query: 608  FCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLN 667
            +  LLY++    SG              S  + E +P  PA++KP+P+WTGKQV++ +L 
Sbjct: 695  YMNLLYAALRPESG------------HCSNGKVETVP--PAVFKPKPMWTGKQVVSTILK 740

Query: 668  HITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVV 727
            ++               PQ       N            GK +    M            
Sbjct: 741  NLQ--------------PQGAQGLTMN------------GKSTTPATMW----------- 763

Query: 728  EGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSN 785
             GK G++              E ++++   DL++G++DK Q   A  G V+ V E YG  
Sbjct: 764  -GKVGKD--------------EGEVIVKDGDLLQGILDKKQIGPASGGFVNAVYEAYGHT 808

Query: 786  TAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALEL 845
             AG LLS L RL T  L M  F+CGV+DL+  ++ E  R+  L G++ +G  V  + + L
Sbjct: 809  IAGKLLSVLGRLLTKLLHMRAFSCGVEDLIFTRNGEESRQKALAGAQTVGLEVASKYVSL 868

Query: 846  EDGAEIDPIK-LKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPT 904
            +D       K LK  +E  +R   DA +   D+ +++      SS V  + +  GL KP 
Sbjct: 869  QDQKPTSEDKELKRRLEDVVR--EDAKLHGLDL-LSNAATAQLSSQVSTDCMPAGLAKPF 925

Query: 905  GKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGG 964
             KN +  MT SGAKGSKVN   IS +LGQQ LEG+RVP MVSGKTLP F P+D + RAGG
Sbjct: 926  PKNQMQTMTNSGAKGSKVNVNLISCNLGQQVLEGRRVPVMVSGKTLPCFAPFDSSVRAGG 985

Query: 965  FIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD 1024
            +I+DRFLTG+RPQEY+FH MAGREGL+DTAVKTSRSGYLQRCLIK +E L++ YD +VR+
Sbjct: 986  YIVDRFLTGIRPQEYFFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRVEYDTTVRN 1045

Query: 1025 A-DGSIVQFCYGEDGVDVHQTSFI--------------------SKFDALAARERGRGRG 1063
              DGS+VQF YGEDG+DV +  ++                      FD L ++E    + 
Sbjct: 1046 TEDGSVVQFLYGEDGLDVGKAKYMDDYKFTAENYLSLFNSMQMGEAFDRLLSQE---AKD 1102

Query: 1064 RNKFCDKG-SHTFVMGRNQEMI--YKKCSGQLDASNAYIMELPDALKDNAEKFA-DKFLS 1119
             NK  +K    T  +G +   I  Y   +     S     ++ D ++ N  +   DK   
Sbjct: 1103 HNKAAEKKFRKTGDLGSSDPAIALYSPANHVGAISEKQFTQIRDYIESNPHRLVRDKKQG 1162

Query: 1120 ----NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMN 1175
                + ++K++   ++  +++ S+ + GE VG++A QSVGEPSTQMTLNTFHLAG    N
Sbjct: 1163 VDGPSTLSKRNLEHILAVRYLKSVVESGEAVGVVAGQSVGEPSTQMTLNTFHLAGHAAKN 1222

Query: 1176 VTLGIPRLQEILTIASKDIKTPVIT 1200
            VTLGIPRL+EI+  A+K+I TP +T
Sbjct: 1223 VTLGIPRLREIVMTAAKEISTPQMT 1247


>gi|426198573|gb|EKV48499.1| hypothetical protein AGABI2DRAFT_220361 [Agaricus bisporus var.
            bisporus H97]
          Length = 1750

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1073 (40%), Positives = 590/1073 (54%), Gaps = 165/1073 (15%)

Query: 211  GTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI----S 266
            G  DT AR  Q    AV    K  +      + P + +  + +L+ NE  +CS I     
Sbjct: 321  GMFDTDAREGQLPR-AVSGRVKTARGRNERVVAPEECRAHLRRLFRNEAVVCSLIFGRHG 379

Query: 267  DMQQQGFG--KKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA 324
                  FG    A   +FF+ V+ V P +FR P+K GD++ EHPQ  LL++VL  +  + 
Sbjct: 380  PFAPLSFGDLSLASADMFFMDVIPVSPTRFRPPAKLGDTLFEHPQNELLARVLTTSYRMR 439

Query: 325  NAYV-----NQPDNAKV-----------IVARWMNLQQSVNVLFDG-KNAAGQRD---MA 364
            +  V      +  +A V           ++ R + LQ  VN   D  KN    R      
Sbjct: 440  DVNVELRSLQEKKDAPVDEGQRKQLLASLLERLVQLQVDVNSFIDSSKNPQPVRQGKLPP 499

Query: 365  SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTP 424
            +G+ Q LEKKEGLFR+ +MGKRVNYA RSVISPD  +  NEIGIPP FA +LT+PE VTP
Sbjct: 500  AGVKQGLEKKEGLFRKHMMGKRVNYAARSVISPDVNIEPNEIGIPPVFARKLTFPEAVTP 559

Query: 425  WNVVKLRDSIINGAEIHPGAT---------HYLDKLSTMR--------LPPNKKMRISIG 467
             N  ++R  +I G   +PGAT           LDKL+  +        L P +  R   G
Sbjct: 560  SNFHEMRQRVITGPHGYPGATMVEYEDGHQQSLDKLTVEQRTAIANQLLTPQEGDRTVAG 619

Query: 468  RK-LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKG 526
            RK L+T   AI             K VYRHL+DGD +++NRQPTLHKPS+M H  +VL+G
Sbjct: 620  RKGLNTRTPAI------------NKKVYRHLKDGDALILNRQPTLHKPSMMVHKAKVLQG 667

Query: 527  EKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLI 586
            EKT+RMHYANC++YNADFDGDEMN+HFPQ+ V+RAEA  I N +NQY+ P++G+PLR LI
Sbjct: 668  EKTIRMHYANCNSYNADFDGDEMNIHFPQNHVARAEAMMIANTDNQYLVPTSGNPLRGLI 727

Query: 587  QDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLL 646
            QDH+V+   +TK+D+F  R+++ QL+Y +            +P      +    E LP  
Sbjct: 728  QDHVVAGVWMTKQDSFFTREDYFQLIYGA-----------LRPEDEDYCTTGRLETLP-- 774

Query: 647  PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDK 706
            P IWKP+PLWTGKQ+I+ +L ++T   PP                               
Sbjct: 775  PTIWKPKPLWTGKQIISTILKNLT---PP------------------------------- 800

Query: 707  GKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
                K   ++ D   K    + GK  +               E+K++    +L+ GV+DK
Sbjct: 801  ----KFKGLNLDAKTKVPGFLWGKDSK---------------EDKVVFMDGELLCGVLDK 841

Query: 767  AQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
            A F  +DYGLVH+V ELYG++ AG LL  LSRLFT FLQ   FTC +DDL++  + +R+R
Sbjct: 842  AAFGASDYGLVHSVYELYGADVAGKLLGILSRLFTKFLQHRAFTCRMDDLILTPEGDRKR 901

Query: 825  KNHLHGSEEIGKRVHLEAL-ELEDGA-EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQ 882
               L      G    +E    L+D A E  P+ L++ +   +R   D  +A  DM + ++
Sbjct: 902  VELLEKGRNWGTEAAIENFPSLKDTAPEEIPVALEALLLNVLR--DDKKMAGLDMTVKTK 959

Query: 883  LNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
            L+K T SSV +  L  GLL+    N +  MT SGAKGS VN +QIS  LGQQELEG+RVP
Sbjct: 960  LSKLT-SSVSDACLPHGLLRKFPHNNMQTMTQSGAKGSAVNARQISCGLGQQELEGRRVP 1018

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
             MVSGKTLPSF P++    AGG++  RFLTG++PQE+YFHCMAGREGL+DTAVKTSRSGY
Sbjct: 1019 VMVSGKTLPSFRPFETKAIAGGYVASRFLTGIKPQEFYFHCMAGREGLIDTAVKTSRSGY 1078

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERG--- 1059
            LQRCLIK+LE + + YD++VR +D SI QF YG D +DV +   + +FD +A  E     
Sbjct: 1079 LQRCLIKHLEGIHVHYDHTVRGSDNSIYQFAYGGDALDVTKQKHLYQFDFIAQNEESLVM 1138

Query: 1060 ------------------------------RGRGRNKFCDKGSHTFVMGRNQEMIYKKCS 1089
                                          + RG     DK      +      +     
Sbjct: 1139 RLQPMRVADAVDDSTAISYMKKVLKRSTDRKRRGEPSKRDKYDPALTLYSPSRFLGATSE 1198

Query: 1090 GQLDASNAYIMELPDAL--KDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVG 1147
                A + Y+   P+ L  K   ++ A +    +M   +F  ++  K++ SL +PGE VG
Sbjct: 1199 QFAVAVDQYMKSNPNDLLTKKGDDEEALRRRHEKMLAYNFKMIMNVKYMRSLVEPGEAVG 1258

Query: 1148 LLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
            LLASQ VGEPSTQMTLNTFH AG G  NVTLGIPRL+EI+  AS+  KTP ++
Sbjct: 1259 LLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASQKPKTPSMS 1311



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 46/76 (60%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    F CPGH+GHIDL  PV++PL    +Y LL+  C FCH FK SR  + + V K
Sbjct: 63  CATCHLTYFTCPGHYGHIDLPAPVFHPLFMGNMYNLLRGCCMFCHRFKMSRTVLCQYVAK 122

Query: 61  LELIIKGDIIAAKSLD 76
             L+ +G + AA  +D
Sbjct: 123 FRLLERGLLEAAHCVD 138


>gi|346976952|gb|EGY20404.1| DNA-directed RNA polymerase I subunit RPA1 [Verticillium dahliae
            VdLs.17]
          Length = 1702

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/1285 (37%), Positives = 668/1285 (51%), Gaps = 172/1285 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC   Q  CPGH GHI+L VPVY+P+  + +  LL+  C +C   +  +R+V     K
Sbjct: 62   CSTCNLNQSSCPGHAGHIELPVPVYHPVFLDQVLRLLRAQCVYCKGLRLRQRDVHLYSCK 121

Query: 61   LELIIKGDIIAAKSLD--------LDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNL 112
            L L+  G + AA  +D        L +P  +   E  +  + +  +++  R  +   R L
Sbjct: 122  LRLLQHGLLQAAHLIDAVGEDFQGLQIPGVTETAEAEEEGSGAD-NLIRAREFFVK-RQL 179

Query: 113  KPQEWT-----------SLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMN 161
            K  + T           +L+     +        +  KC  C   +P   K  F  I   
Sbjct: 180  KEHKATVGDVRKGKHEGALEIRRELIKEFMAAIPKPKKCDTCGGISPPYRKDAFVKIFEK 239

Query: 162  GMPHAD----------IRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPG 211
             +   D          IR  +     + +T   G    +  A +DVD+  + +       
Sbjct: 240  PLSERDAAKMAQTNLRIRDAMTAATPVSKTKWNGYTSDE--AIADVDSSASDADGDVNMA 297

Query: 212  TQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPS-DVKDIIEKLWENEFELCSFISDMQQ 270
              D+ +    +G  A  SG + +    S   + + +V++ + +L++ E E+ S I +   
Sbjct: 298  EPDSGSSSESEGQAAKVSGGQTKASARSQRYITAMEVRERLRELFDKEQEVLSLIYN--S 355

Query: 271  QGFGKKAGH---SIFFLGVVLVPPIKFRLPSKGGDS-VMEHPQTVLLSKVLQANIYLANA 326
            +   KKAG     +FFL  +LVPP +FR  ++ GDS + E  Q  L   VL++   +A  
Sbjct: 356  KPLKKKAGKVSADMFFLQTLLVPPNRFRPEARTGDSEISEAQQNSLYKLVLRSCGTIARV 415

Query: 327  YVNQPDNAKVIVAR--------WMNLQQSVNVLFD-GKN----AAGQRDMASGICQLLEK 373
            + +         AR        W +LQ +VN L D  KN    AA +R+   GI Q LEK
Sbjct: 416  HQSIGGATTERRARTMTDLHQAWTDLQNAVNSLIDKDKNPVMGAAAKRN-EEGIKQKLEK 474

Query: 374  KEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDS 433
            KEGLFR+ +MGKRVN+A RSVISPDP +  NEIG+PP FA +LT+PE VT  N   ++ +
Sbjct: 475  KEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFARKLTFPEPVTSHNFRDMQRA 534

Query: 434  IINGAEIHPGAT--HYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGK 491
            +ING +  PGA    Y +   T     +   RIS+  +L       + P   + +    K
Sbjct: 535  VINGVDKWPGAAAIEYENGQITNLRGKSADDRISLANQL-------LAPTDSNMSSVRNK 587

Query: 492  MVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNV 551
             VYRHL +GDVVL+NRQPTLHKPSIM H VRVL GEKT+RMHYANC+TYNADFDGDEMN+
Sbjct: 588  KVYRHLTNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEMNM 647

Query: 552  HFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL 611
            HFPQ+EV+RAEA  I + ++QY+  + G PLR LIQDHI  +  L  +D+F  R +F QL
Sbjct: 648  HFPQNEVARAEALQIADTDHQYLSGTAGKPLRGLIQDHISVSVSLCSRDSFFTRGDFQQL 707

Query: 612  LYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITR 671
            +Y++    SG           +L  R   E++P  PAI KP P WTGKQVIT +L +I  
Sbjct: 708  VYAALRPESG----------HILGER--LELVP--PAIIKPVPRWTGKQVITTILKNI-- 751

Query: 672  GRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKP 731
             +PP                             +   +S   +   D+ GK  E      
Sbjct: 752  -KPP---------------------------TGEGIWMSGKTQTPADRWGKGSE------ 777

Query: 732  GEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGT 789
                             E  +L      + G++DKA    +  GL+H+V E+YG   AG 
Sbjct: 778  -----------------EGIVLFQDGHFLHGILDKAHLGPSSGGLIHSVHEVYGPAIAGK 820

Query: 790  LLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGA 849
            LLS+L RL T +L M  FTCG+DDL +  + E+ R++ L  + +IG +V  + + L D  
Sbjct: 821  LLSSLGRLLTRYLNMRAFTCGMDDLRLTPEGEQTRRDTLREASDIGLQVATKYVSLGDS- 879

Query: 850  EIDPIKLKSE----IEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTG 905
              +P    +E    +E+ MR   D      DM M +Q +   S ++    L  GL+K   
Sbjct: 880  --NPTSTDAELLIRLEEVMR--DDNKQEGLDMLM-NQRSGELSQAITKACLPSGLVKQFP 934

Query: 906  KNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGF 965
            KN +  MT SGAKG  VN   IS +LGQQ LEG+RVP MVSGK+LP F P+D + RAGG+
Sbjct: 935  KNQMQAMTVSGAKGGPVNANLISCNLGQQVLEGRRVPLMVSGKSLPCFKPFDSSVRAGGY 994

Query: 966  IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDA 1025
            I+ RFLTG+RPQEYYFH MAGREGL+DTAVKTSRSGYLQRC+IK +E L +SYD +VRDA
Sbjct: 995  IVQRFLTGIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCIIKGMEGLTVSYDSTVRDA 1054

Query: 1026 DGSIVQFCYGEDGVDVHQTSFISKFDALAA---------------RERGRGRGRN----- 1065
            DG+++QF YGEDG+D  +  +++ F  +                 RE   G   N     
Sbjct: 1055 DGTLIQFLYGEDGLDPTKQKYLTDFGFILRNIESESAQLGFSSDFRETLAGNKDNILKHM 1114

Query: 1066 ----KFCDKG-----SHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDAL-KDNAEKFAD 1115
                K+   G          M     + +       ++   YI E  D L ++  EK   
Sbjct: 1115 KSAIKYAKAGKVGGKDPVISMVNPARVAFATSEKFYESMTEYIKENKDGLVREKGEKRPA 1174

Query: 1116 KFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMN 1175
                  ++K+    ++  K++ SL + GE VG++A QS+GEPSTQMTLNTFHLAG    N
Sbjct: 1175 TSFIPSVSKKSAELVLAAKYMRSLVEAGEGVGIVAGQSIGEPSTQMTLNTFHLAGHSAKN 1234

Query: 1176 VTLGIPRLQEILTIASKDIKTPVIT 1200
            VTLGIPRL+EIL  ASK I TP +T
Sbjct: 1235 VTLGIPRLREILMTASKTISTPSMT 1259


>gi|258563376|ref|XP_002582433.1| hypothetical protein UREG_07206 [Uncinocarpus reesii 1704]
 gi|237907940|gb|EEP82341.1| hypothetical protein UREG_07206 [Uncinocarpus reesii 1704]
          Length = 1666

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/1263 (37%), Positives = 655/1263 (51%), Gaps = 153/1263 (12%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC    + C GH GH++L V VYN   F+ L+ LL+  C +CH F+ SR ++   V K
Sbjct: 63   CTTCRLNAWSCAGHPGHVELPVHVYNVTFFDQLFRLLRAQCIYCHRFRLSRVQINAYVCK 122

Query: 61   LELIIKGDIIAAK---SLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNY----------D 107
            L L+  G +  A    +++L     +   E  D  ++    ++  R  Y          D
Sbjct: 123  LRLLQYGLVEEASIVGTMELRKGKSNKADESDDSDDEDDEDLIDRRNVYVQKCISGIATD 182

Query: 108  NVRNLKPQEWTSLQFAEAKLALLQ-FLK--IETTKCGNCKAKNPRISKPTFGWIHMNGMP 164
              R    +   +   AE + A+++ FLK  +   KC +C   +P   +  +  I    +P
Sbjct: 183  KRRQNHMKMAKNPATAEMRRAIVRDFLKDVVNMKKCASCSGISPPYRRDKYSKIFRKSLP 242

Query: 165  HADIRANLIRGCNLGETFSGGEEEKDLGASSDV----DAPETHSFNGTFPGTQDTAARRH 220
                 A +  G  +       EE   L          D+ +   ++       DT     
Sbjct: 243  QKAKAAMVAAGFQIPNPLVLMEEANQLSKKHKSIPKKDSAKAVDYDDNISVVTDTHGAEQ 302

Query: 221  QKGSGAV---------PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQ 271
            Q   G           PS  + + D     +  S++   I  L+E E E+   + D +  
Sbjct: 303  QVSMGNAVLAEVEENRPSSARGELDDSQQYIPSSEIYASIRFLFEKEQEILDLVYDSRPG 362

Query: 272  GFGKK-AGHSIFFLGVVLVPPIKFRLPS-KGGDSVMEHPQTVLLSKVLQANIYLANAYVN 329
              GK      +FF+  +LVPP K+R  + +G   +ME  Q    +++L+          N
Sbjct: 363  SAGKSHVSADMFFIKNILVPPNKYRPAAHQGPGQIMEAQQNTSFTRILK---LCDPDQPN 419

Query: 330  QPDNAK--VIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRV 387
            QP  A+   ++ R  N  Q          AAG ++   GI Q LEKK+GLFR+ +MGKRV
Sbjct: 420  QPGKARGQYLIDRDRNPNQG---------AAGIQN-EDGIKQRLEKKDGLFRKNMMGKRV 469

Query: 388  NYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY 447
            N+A RSVISPDP +  NEIGIP  FA +LTYPE VT  N  +L+ ++ING +I+PGA   
Sbjct: 470  NFAARSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAV 529

Query: 448  LDKLSTMRLPPNKKM--RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLV 505
             ++L  +     K +  RI+I   L       + P          K VYRHL  GDVVL+
Sbjct: 530  ENELGQVVNLKFKTVDERIAIANML-------LSPSNWKLKRSRNKKVYRHLTTGDVVLM 582

Query: 506  NRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYN 565
            NRQPTLHKPSIM H  RVL GE+T+RMHYANC+TYNADFDGDEMN+HFPQ+E++RAEA  
Sbjct: 583  NRQPTLHKPSIMGHRARVLTGERTIRMHYANCNTYNADFDGDEMNLHFPQNEIARAEAMQ 642

Query: 566  IVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSF 625
            + + ++QY+  ++G PLR LIQDHI      + +D+  + +++ QLLYS     +     
Sbjct: 643  LADTDHQYLVATSGQPLRGLIQDHISIGTWFSSRDSLFDEEDYHQLLYSCLRPEN----- 697

Query: 626  TGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLP 685
            +   G+++       E++P  PAI KPEP WTGKQVI+ +L                   
Sbjct: 698  SHTVGEKI-------ELMP--PAIIKPEPRWTGKQVISTILQ------------------ 730

Query: 686  QDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEK 745
                    N   +S    N  GK S       D+ GK                       
Sbjct: 731  --------NVTPESRAGLNLVGKSSTP----ADRWGKD---------------------- 756

Query: 746  ELSEEKLLIYKN-DLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFL 802
              SEE  +I+K+ +L+ G++DKAQ      GL+H+V E+YG   AG L+  L RL T FL
Sbjct: 757  --SEEGQVIFKDGELLCGILDKAQLGSSPGGLIHSVHEVYGHIVAGKLIGILGRLLTRFL 814

Query: 803  QMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGA-EIDPIKLKSEIE 861
            QM  F+CG+DDL + K  + +RKN L   + +G  V L+ + L++   E    +L+  +E
Sbjct: 815  QMRAFSCGMDDLRLTKQGDEDRKNQLKAGDNLGHEVALKYVLLDESPIEDKDAELQRRLE 874

Query: 862  KAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSK 921
            + +R   D   A  D    S+  K  SS + +  L  GL KP   N +  MT S AKGS 
Sbjct: 875  EVLR--DDDKQAGLDSMFNSRTVK-LSSDITSACLPRGLEKPFPWNQMQTMTVSRAKGSM 931

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            VN   IS +LGQQ LEG+RVP M+SGKTLPSF P++    AGG++  RFLTG++PQEYYF
Sbjct: 932  VNANLISCNLGQQVLEGRRVPVMISGKTLPSFRPYETKLIAGGYVSGRFLTGIKPQEYYF 991

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD-ADGSIVQFCYGEDGVD 1040
            H MAGREGL+DTAVKTSRSGYLQRCLIK +E L+  YD SVRD  DG++VQF YGEDG+D
Sbjct: 992  HAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRAEYDNSVRDTTDGTLVQFLYGEDGLD 1051

Query: 1041 VHQTSFISKFDALAARE---RGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNA 1097
            + +   +  F  LA        +  G N+F    S          M   K +GQ DA + 
Sbjct: 1052 ITKQKHLQDFSFLAQNYFSIYSQVNGMNEFNKVNSEVASKWNKSAMKKVKKTGQFDAKDP 1111

Query: 1098 YIME-------------LPDALKDNAEKFADKFLSNE------MAKQDFLKLVKHKFVLS 1138
             +                  ALK+  +   DK L ++      +AK+DF  ++  K++ +
Sbjct: 1112 VLAHYHPGANFGSTSESFAVALKEYEKANPDKLLRDKGQGIDGIAKKDFEHIMNLKYMRA 1171

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
            +  PGE VG++A QSVGEPSTQMTLNTFHLAG    NVTLGIPRL+EI+  AS  I TP 
Sbjct: 1172 VVDPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASAQISTPT 1231

Query: 1199 ITC 1201
            ++ 
Sbjct: 1232 MSA 1234


>gi|322695488|gb|EFY87295.1| DNA-directed RNA polymerase I subunit RPA1 [Metarhizium acridum CQMa
            102]
          Length = 1673

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/1274 (36%), Positives = 668/1274 (52%), Gaps = 180/1274 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC      CPGH GHI L  PVY+P+  +  Y LL+  C +C  F+   +++ K + K
Sbjct: 62   CATCSLTSSSCPGHPGHIQLPAPVYHPVFMDQAYHLLRAACVYCKGFRIPPKDLHKYMCK 121

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDS--------DVSNKSSCSMVTPRGNY------ 106
            L L+  G I  A  +D    ++ S  E++        D  N S  ++   R  Y      
Sbjct: 122  LRLLQHGLIREAHIVDALGEADWSEMEEALGLDESEADEENSSIDNVTRKREQYVQECLR 181

Query: 107  -DNVRNLKPQEWTSLQFAEAKLALLQFLKIETTK---CGNCKAKNPRISKPTFGWIHMNG 162
               +R    ++      A+A+  +++    E TK   C +C   +P   K  F  I    
Sbjct: 182  SSALRRGDTRKGKHEGMAQARREIIKQFLSEITKRRQCASCAGISPSYRKDRFVKIFEKS 241

Query: 163  MPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQK 222
            +   +     ++     +  +   + K L   +DV+  E  +        QD      + 
Sbjct: 242  LSPKEATKMALKNFARKDAMTRHYDAK-LDPKADVETSEPDAIVEPL-SDQD----EEEP 295

Query: 223  GSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGK-KAGHSI 281
              GA    +          + P +V+  + +L++ E ++ S + + + +          +
Sbjct: 296  NDGATSQRY----------ISPMEVRARLSELFKKEQDIVSLLYNSKPRTRSSPDITPDM 345

Query: 282  FFLGVVLVPPIKFRLPSKGGDS-VMEHPQTVLLSKVLQANIYLANAY--VNQPDNAKV-- 336
            FF+  +LVPP ++R  ++ GDS V E  Q  L   +L+    +A  Y  +   ++A +  
Sbjct: 346  FFITTILVPPNRYRPEARMGDSQVTEAEQNSLYKSILRGCSKIARVYSVLKSEEHADITQ 405

Query: 337  IVARWMNLQQSVNVLFD-GKN----AAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYAC 391
            +   W  LQ+ VN L D  KN    AA +R+   GI Q LEKKEGLFR+ +MGKRVNYA 
Sbjct: 406  LHQAWTELQEGVNALIDKSKNPVQGAAAKRN-EDGIKQKLEKKEGLFRKNMMGKRVNYAA 464

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            RSVISPDP +  NEIG+PP FA +LT+PE VT  N   ++ ++INGA   PGA    ++ 
Sbjct: 465  RSVISPDPNIETNEIGVPPVFAQKLTFPEPVTNHNFRDMQQAVINGANTWPGAVAIENEN 524

Query: 452  STMRLPPNKKM--RISIGRKL--DTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNR 507
              +++  NK +  RIS+  +L   T+ GA+           + K VYRH+ +GDVVL+NR
Sbjct: 525  GQVQMLKNKSVDERISLANQLLAPTNPGAV---------RLKNKKVYRHITNGDVVLMNR 575

Query: 508  QPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIV 567
            QPTLHKPSIM H VRVL GEKT+RMHYANC+TYNADFDGDEMN+HFPQ+E++RAEA +I 
Sbjct: 576  QPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPQNEIARAEALHIA 635

Query: 568  NANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTG 627
            + ++QY+  + G PLR LIQDHI  +  L  +DTF +R ++  L+Y +    SG   F  
Sbjct: 636  DTDHQYLSGTQGKPLRGLIQDHISISIALCSRDTFFSRGDYHSLVYCAIRPESG-HIF-- 692

Query: 628  KPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQD 687
              G+R+       +++P  PAI KP P WTGKQVI+ +L +                P +
Sbjct: 693  --GERI-------QLVP--PAIIKPVPRWTGKQVISTILKNTQ--------------PIN 727

Query: 688  FFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKEL 747
            +       + Q                +  ++ G K E                      
Sbjct: 728  YGALNLRGESQ----------------IKAEQWGPKSE---------------------- 749

Query: 748  SEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH 805
             E  +LI + + V G++DK+Q      GL+H + E++G   A  LLSAL RL T +L M 
Sbjct: 750  -EGTVLIQEGEFVTGILDKSQIGQSSGGLIHAIHEIHGPAIASKLLSALGRLLTRYLNMR 808

Query: 806  GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMR 865
             F+CGVDDL +    E  R+  L     +G  V    + L+D ++     L   +E+ +R
Sbjct: 809  AFSCGVDDLKLTAKGEEARRQELQAINRVGLEVASNYVSLKDVSDSQNPVLLERLEEVLR 868

Query: 866  GGGDAAVAYFDMKMTSQLNKHTSSSVINEL----LSEGLLKPTGKNWISLMTTSGAKGSK 921
               D  +   D+ M      HT+  + +++    +  GL KP  +N +  MTTSGAKGS+
Sbjct: 869  --DDTKLEGLDLLMN-----HTTREITDKVQKVCIPNGLEKPFPRNQMQAMTTSGAKGSR 921

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            VN   IS +LGQQ LE +RVP MVSGK+LP F P++    A G+I  RFLTG+RPQEYYF
Sbjct: 922  VNASLISCNLGQQVLESRRVPIMVSGKSLPCFKPFETNITANGYIGSRFLTGIRPQEYYF 981

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV 1041
            H MAGREGL+DTAVKTSRSGYLQRC+IK LE L ++YD +VRDADGSI+QF YGEDG+DV
Sbjct: 982  HHMAGREGLIDTAVKTSRSGYLQRCVIKGLEGLMVAYDTTVRDADGSIIQFLYGEDGLDV 1041

Query: 1042 HQTSFISKFDAL---AARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLD----- 1093
             + +++  F  +      E  + R   +   +      +G ++E+  K     +      
Sbjct: 1042 TKQTYLKDFGFILRNLTSEVAQLRYDPQVVKR------LGADRELFTKYMKSAVKHSKPG 1095

Query: 1094 --------------ASNAYIME------LPDALKDNAEKFADKF-------LSNEMAKQD 1126
                          A+NA+++       +   LK NA+    +         S+ + +++
Sbjct: 1096 DPKGRDPLISAFNPATNAFVLSEAFYNAMSSYLKANADGLVREKGNKSAPDSSHALNRKN 1155

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
               L   K++ SL +PGE VG++A QSVGEPSTQMTLNTFHLAG    NVT GIPRL+EI
Sbjct: 1156 AEVLFAMKYLQSLVEPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHAAKNVTAGIPRLREI 1215

Query: 1187 LTIASKDIKTPVIT 1200
            L  ASKDI TP ++
Sbjct: 1216 LMTASKDISTPAMS 1229


>gi|395324163|gb|EJF56609.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Dichomitus squalens LYAD-421 SS1]
          Length = 1724

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1037 (41%), Positives = 589/1037 (56%), Gaps = 151/1037 (14%)

Query: 244  PSDVKDIIEKLWENEFELCSFI-------SDMQQQGFGKKAGHSIFFLGVVLVPPIKFRL 296
            P + +  + +L+ NE  +CS +       + + Q      A   +FFL V+ V P +FR 
Sbjct: 334  PEECRAHLRRLFRNESVMCSLLFGRHGPFAPLSQHNLSL-ASADMFFLEVLPVSPTRFRP 392

Query: 297  PSKGGDSVMEHPQTVLLSKVLQAN---------IYLANAYVNQPDNA------KVIVARW 341
            P+K GD + EHPQ  LLSKVL  +         + LA+   +  D A      + ++   
Sbjct: 393  PAKMGDMLFEHPQNELLSKVLTTSYRLRDLNNSLRLASEKGSDVDEAARRRILQSLLDSL 452

Query: 342  MNLQQSVNVLFDG-KNAAGQRD---MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
            + LQ  VN   D  KN    R      +G+ Q LEKKEGLFR+ +MGKRVNYA RSVISP
Sbjct: 453  IQLQVDVNSYIDSSKNPQPIRQGRLPPAGVKQGLEKKEGLFRKHMMGKRVNYAARSVISP 512

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGAT---------HYL 448
            D  +  NEIGIPP FA +LT+PE VTP N  +LR  +I GA  +PGAT          +L
Sbjct: 513  DVNIEPNEIGIPPVFARKLTFPEPVTPNNFHELRQLVITGARGYPGATIVEYEDGHQQFL 572

Query: 449  DKLSTMRLPPNKKMRISIGRKLDT----SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVL 504
            DKL+        + R +I  +L T    S G+  + G  +      K VYRHL+DGD+++
Sbjct: 573  DKLTL-------EQRTAIANQLLTPQEGSHGSAQRHGLYTSTPAVNKKVYRHLRDGDILI 625

Query: 505  VNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAY 564
            +NRQPTLHKPS+M H  RVL GEKT+RMHYANC++YNADFDGDEMN+HFPQ++V+RAEAY
Sbjct: 626  LNRQPTLHKPSMMCHKARVLHGEKTIRMHYANCNSYNADFDGDEMNIHFPQNQVARAEAY 685

Query: 565  NIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGS 624
             I N +NQY+ P++G PLR LIQDH+V+   +T +D+F  R+E+ QLLY +         
Sbjct: 686  YIANTDNQYLVPTSGKPLRGLIQDHVVAGVWMTAQDSFFTREEYFQLLYGA--------- 736

Query: 625  FTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKL 684
               +P    L  +     LP  P IWKP+PLWTGKQ+I+ V+ +IT    P V E     
Sbjct: 737  --LRPEDEPLEGKRRLVTLP--PTIWKPQPLWTGKQIISTVMKNIT----PSVFE----- 783

Query: 685  PQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKE 744
                     N   Q+    +  GK SK                                 
Sbjct: 784  -------GLNLHAQAKVPGHLWGKDSK--------------------------------- 803

Query: 745  KELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFL 802
                E++++    +L+ GV+DK+ F  +D+GLVH+V ELYG++TAG LL  LSRLFT FL
Sbjct: 804  ----EDQVVFMDGELLSGVLDKSAFGASDFGLVHSVYELYGADTAGRLLGILSRLFTKFL 859

Query: 803  QMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIK--LKSEI 860
            Q   FTC +DDL +  D   +R   L     +G    +E   +    + D     L+S +
Sbjct: 860  QHRAFTCRMDDLALTPDGNAKRAELLVTGANLGTEGAMENFPVLKTTQDDEKSQVLRSLL 919

Query: 861  EKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGS 920
            E  +R   D+ +A  D+ +  +L K T  S+ + ++  GLL+    N +  MT SGAKGS
Sbjct: 920  EDVLR--DDSKMAGLDVTVKGKLAKLT-KSIADAVMPHGLLRQFPHNHMQAMTVSGAKGS 976

Query: 921  KVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYY 980
             VN QQIS  LGQQELEG+RVP MVSGKTLPSF P++    AGG++  RFLTG++PQE++
Sbjct: 977  AVNAQQISCALGQQELEGRRVPTMVSGKTLPSFKPFETRAMAGGYVASRFLTGVKPQEFF 1036

Query: 981  FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE +++ YD +VR +D S+ QF YG D +D
Sbjct: 1037 FHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIRVHYDNTVRGSDSSVYQFNYGGDSLD 1096

Query: 1041 VHQTSFISKFDALAARE-------RGRGRGRNKFCDKGSHTFVMGRNQEMIYKK------ 1087
            V +   +++F+ +A  E       + +  G +   D   +   + + ++  +K+      
Sbjct: 1097 VTKQKHLTQFEFIARNEVSFVERLQPKSLGGHVSEDAVDYMKKIVKYKDKKHKRDRMLPT 1156

Query: 1088 -----------CSGQL--DASNAYIMELPDAL---KDNAEKFADKFLSNEMAKQDFLKLV 1131
                        + +L  D    YI + P  L   K+   +F  K     ++K++F  L 
Sbjct: 1157 ISKYPPQRNVGSTSELFADKVEEYIQKNPHGLIKEKEGEARF--KRRRAPLSKKNFRLLT 1214

Query: 1132 KHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIAS 1191
              K++ SL +PGE VGLLASQ VGEPSTQMTLNTFH AG G  NVTLGIPRL+EI+  AS
Sbjct: 1215 SVKYMRSLVEPGEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTAS 1274

Query: 1192 KDIKTPVITCPLLVGKT 1208
            +  KTP +T  +  G T
Sbjct: 1275 QKPKTPSMTMRVRPGTT 1291



 Score = 86.3 bits (212), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 48/76 (63%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    + CPGHFGHIDL  PV++PL     Y LL+  C FCH FK SR  + K V K
Sbjct: 63  CATCRLAYYTCPGHFGHIDLPAPVFHPLFMVNAYHLLRGTCLFCHRFKVSRFVLCKFVAK 122

Query: 61  LELIIKGDIIAAKSLD 76
           L L+  G ++AAK+LD
Sbjct: 123 LRLLEYGFLVAAKALD 138


>gi|392568044|gb|EIW61218.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Trametes versicolor FP-101664 SS1]
          Length = 1739

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1040 (41%), Positives = 580/1040 (55%), Gaps = 160/1040 (15%)

Query: 244  PSDVKDIIEKLWENEFELCSFISDMQ------QQGFGKKAGHSIFFLGVVLVPPIKFRLP 297
            P + +  + +L+ NE  +CS +           Q     A   +FF+ V+ V P +FR P
Sbjct: 337  PEECRAHLRRLFRNESVMCSLLFGRHGPLAPVNQNNLSLASADMFFMEVLPVSPTRFRPP 396

Query: 298  SKGGDSVMEHPQTVLLSKVLQA---------NIYLANAYVNQPDNA------KVIVARWM 342
            +K G+ + EHPQ  L+SKVL           N+  A+   +  + A      + ++   +
Sbjct: 397  AKMGEMLFEHPQNELMSKVLTTSYRLRDLNNNLRAASTKGSDVEEAARRRILQSLLDTLI 456

Query: 343  NLQQSVNVLFDG-KNAAGQRD---MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
             LQ  VN   D  KN    R      +G+ Q LEKKEGLFR+ +MGKRVNYA RSVISPD
Sbjct: 457  QLQVDVNSYIDSSKNPTPIRQGRLPPAGVKQGLEKKEGLFRKHMMGKRVNYAARSVISPD 516

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGAT---------HYLD 449
              +  NEIGIPP FA +LT+PE VTP N  +LR  +I GA  +PGAT         H+LD
Sbjct: 517  VNIEPNEIGIPPVFARKLTFPEPVTPNNFHELRQLVITGARGYPGATMVEYEDGHLHFLD 576

Query: 450  KLSTMRLPPNKKMRISIGRKLDT----SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLV 505
            KL+        + R +I  +L T    S G+  + G  +      K VYRHL+DGD++++
Sbjct: 577  KLTL-------EQRTAIANQLLTPQEGSHGSAQRQGLYTSTPAVNKKVYRHLRDGDILIL 629

Query: 506  NRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYN 565
            NRQPTLHKPS+M H  RVL+GEKT+RMHYANC++YNADFDGDEMN+HFPQ+ V+RAEAY 
Sbjct: 630  NRQPTLHKPSMMCHKARVLQGEKTIRMHYANCNSYNADFDGDEMNIHFPQNHVARAEAYF 689

Query: 566  IVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSF 625
            I N +NQY+ P++G PLR LIQDH+V+   +T +D F  R+E+ QLLY +          
Sbjct: 690  IANTDNQYLVPTSGKPLRGLIQDHVVAGVWMTAQDAFFTREEYFQLLYGALRPEDDPEQH 749

Query: 626  TGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPP----FVVERG 681
             G+             ++ L P IWKP+PLWTGKQ+I+ V+ +IT   PP      +   
Sbjct: 750  GGR-------------LVTLPPTIWKPKPLWTGKQIISTVMKNIT---PPQFDGLNLHAA 793

Query: 682  GKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNK 741
             K+P   + T    D Q D                                         
Sbjct: 794  AKVPGHLWGT----DSQED----------------------------------------- 808

Query: 742  SKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFT 799
                     K++    +L+ G++DK+ F  +DYGLVH+V ELYG++ AG LL  LSRLFT
Sbjct: 809  ---------KVVFMDGELLSGILDKSAFGASDYGLVHSVYELYGADVAGKLLGVLSRLFT 859

Query: 800  VFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALE-LEDGAEID-PIKLK 857
             FLQ   FTC +DDL +  D    R + +  S  +G    +E    L+   E + P  L+
Sbjct: 860  KFLQHRAFTCRMDDLALTPDGNARRADLIAKSTNLGTEGAIENFPVLKTTPEGERPAVLR 919

Query: 858  SEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGA 917
            S +E  +R   D+ +A  D+ +  +L K T  S+ + ++  GLL+    N +  MT SGA
Sbjct: 920  SLLEDVLR--DDSKMAGLDVTVKGKLAKLT-KSIADAVMPHGLLRQFPHNHMQAMTVSGA 976

Query: 918  KGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQ 977
            KGS VN QQIS  LGQQELEG+RVP MVSGKTLPSF P++    AGG++  RFLTG++PQ
Sbjct: 977  KGSAVNAQQISCALGQQELEGRRVPVMVSGKTLPSFKPFETKAIAGGYVASRFLTGVKPQ 1036

Query: 978  EYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGED 1037
            E++FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE +++ YD +VR +D SI QF YG D
Sbjct: 1037 EFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGVRVHYDNTVRGSDSSIYQFNYGGD 1096

Query: 1038 GVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMI-----YKKCSGQL 1092
             +DV +   +++F+ +A   R      N++  +  H  V     E +     YK    + 
Sbjct: 1097 SLDVTKQKHLTQFEFIA---RNETSFVNRYQPRSLHGLVSEEAVEYMKKIVKYKDRKHKR 1153

Query: 1093 DASNAYIMELPDA--LKDNAEKFADKF----------LSNE--------------MAKQD 1126
            D     + + P    L   +E FADK           L  E              ++K++
Sbjct: 1154 DKYVPALSKYPPQRFLGSTSELFADKVDDYVKKNPHGLLREKGDDSLPIKRRKAPLSKKN 1213

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            F  L   K++ SL +PGE VGLLASQ VGEPSTQMTLNTFH AG G  NVTLGIPRL+EI
Sbjct: 1214 FQLLTSVKYMRSLVEPGEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREI 1273

Query: 1187 LTIASKDIKTPVITCPLLVG 1206
            +  AS   KTP +T  +  G
Sbjct: 1274 VMTASTKPKTPSMTMKVHAG 1293



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    F CPGHFGHI+L  PV++PL     Y L++  C FCH FK SR  + K V K
Sbjct: 63  CATCRLSYFTCPGHFGHIELPAPVFHPLFMANAYHLIRGTCLFCHRFKLSRF-LCKYVAK 121

Query: 61  LELIIKGDIIAAKSLD 76
           L L+  G ++AAK+LD
Sbjct: 122 LRLLEYGFVVAAKALD 137


>gi|409079663|gb|EKM80024.1| hypothetical protein AGABI1DRAFT_57378 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1750

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1073 (40%), Positives = 588/1073 (54%), Gaps = 165/1073 (15%)

Query: 211  GTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI----S 266
            G  DT AR  Q    AV    K  +      + P + +  + +L+ NE  +CS I     
Sbjct: 321  GMFDTDAREGQLPR-AVSGRVKTARGRNERVVAPEECRAHLRRLFRNEAVVCSLIFGRHG 379

Query: 267  DMQQQGFG--KKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA 324
                  FG    A   +FF+ V+ V P +FR P+K GD++ EHPQ  LL++VL  +  + 
Sbjct: 380  PFAPLSFGDLSLASADMFFMDVIPVSPTRFRPPAKLGDTLFEHPQNELLARVLTTSYRMR 439

Query: 325  NAYV-----NQPDNAKV-----------IVARWMNLQQSVNVLFDG-KNAAGQRD---MA 364
            +  V      +  +  V           ++ R + LQ  VN   D  KN    R      
Sbjct: 440  DVNVELRSLQEKKDVPVDEGQRKQLLASLLERLVQLQVDVNSFIDSSKNPQPVRQGKLPP 499

Query: 365  SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTP 424
            +G+ Q LEKKEGLFR+ +MGKRVNYA RSVISPD  +  NEIGIPP FA +LT+PE VTP
Sbjct: 500  AGVKQGLEKKEGLFRKHMMGKRVNYAARSVISPDVNIEPNEIGIPPVFARKLTFPEAVTP 559

Query: 425  WNVVKLRDSIINGAEIHPGAT---------HYLDKLSTMR--------LPPNKKMRISIG 467
             N  ++R  +I G   +PGAT           LDKL+  +        L P +  R   G
Sbjct: 560  SNFHEMRQRVITGPHGYPGATMVEYEDGHQQSLDKLTVEQRTAIANQLLTPQEGDRTVAG 619

Query: 468  RK-LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKG 526
            RK L T   AI             K VYRHL+DGD +++NRQPTLHKPS+M H  +VL+G
Sbjct: 620  RKGLHTRTPAI------------NKKVYRHLKDGDALILNRQPTLHKPSMMVHKAKVLQG 667

Query: 527  EKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLI 586
            EKT+RMHYANC++YNADFDGDEMN+HFPQ+ V+RAEA  I N +NQY+ P++G+PLR LI
Sbjct: 668  EKTIRMHYANCNSYNADFDGDEMNIHFPQNHVARAEAMMIANTDNQYLVPTSGNPLRGLI 727

Query: 587  QDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLL 646
            QDH+V+   +TK+D+F  R+++ QL+Y +            +P      +    E LP  
Sbjct: 728  QDHVVAGVWMTKQDSFFTREDYFQLIYGA-----------LRPEDEDYCTTGRLETLP-- 774

Query: 647  PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDK 706
            P IWKP+PLWTGKQ+I+ +L ++T   PP                               
Sbjct: 775  PTIWKPKPLWTGKQIISTILKNLT---PP------------------------------- 800

Query: 707  GKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
                K   ++ D   K    + GK  +               E+K++    +L+ GV+DK
Sbjct: 801  ----KFKGLNLDAKTKVPGFLWGKDSK---------------EDKVVFMDGELLCGVLDK 841

Query: 767  AQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
            A F  +DYGLVH+V ELYG++ AG LL  LSRLFT FLQ   FTC +DDL++  + +R+R
Sbjct: 842  AAFGASDYGLVHSVYELYGADVAGKLLGTLSRLFTKFLQHRAFTCRMDDLILTPEGDRKR 901

Query: 825  KNHLHGSEEIGKRVHLEAL-ELEDGA-EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQ 882
               L      G    +E    L+D A E  P+ L++ +   +R   D  +A  DM + ++
Sbjct: 902  VELLEKGRNWGTEAAIENFPSLKDTAPEEIPVALEALLLNVLR--DDKKMAGLDMTVKTK 959

Query: 883  LNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
            L+K T SSV +  L  GLL+    N +  MT SGAKGS VN +QIS  LGQQELEG+RVP
Sbjct: 960  LSKLT-SSVSDACLPHGLLRKFPHNNMQTMTQSGAKGSAVNARQISCGLGQQELEGRRVP 1018

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
             MVSGKTLPSF P++    AGG++  RFLTG++PQE+YFHCMAGREGL+DTAVKTSRSGY
Sbjct: 1019 VMVSGKTLPSFRPFETKAIAGGYVASRFLTGIKPQEFYFHCMAGREGLIDTAVKTSRSGY 1078

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERG--- 1059
            LQRCLIK+LE + + YD++VR +D SI QF YG D +DV +   + +FD +A  E     
Sbjct: 1079 LQRCLIKHLEGIHVHYDHTVRGSDNSIYQFAYGGDALDVTKQKHLYQFDFIAQNEESLVM 1138

Query: 1060 ------------------------------RGRGRNKFCDKGSHTFVMGRNQEMIYKKCS 1089
                                          + RG     DK      +      +     
Sbjct: 1139 RLQPMRVADAVDDSTAISYMKKVLKRSTDRKRRGEPSKRDKYDPALTLYSPSRFLGATSE 1198

Query: 1090 GQLDASNAYIMELPDAL--KDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVG 1147
                A + Y+   P+ L  K   ++ A +    +M   +F  ++  K++ SL +PGE VG
Sbjct: 1199 QFAVAVDQYMKSNPNDLLTKKGDDEEALRRRHEKMLAYNFKMIMNVKYMRSLVEPGEAVG 1258

Query: 1148 LLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
            LLASQ VGEPSTQMTLNTFH AG G  NVTLGIPRL+EI+  AS+  KTP ++
Sbjct: 1259 LLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASQKPKTPSMS 1311



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 46/76 (60%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    F CPGH+GHIDL  PV++PL    +Y LL+  C FCH FK SR  + + V K
Sbjct: 63  CATCHLTYFTCPGHYGHIDLPAPVFHPLFMGNMYNLLRGCCMFCHRFKMSRTVLCQYVAK 122

Query: 61  LELIIKGDIIAAKSLD 76
             L+ +G + AA  +D
Sbjct: 123 FRLLERGLLEAAHCVD 138


>gi|225560308|gb|EEH08590.1| RNA polymerase I largest subunit [Ajellomyces capsulatus G186AR]
          Length = 1697

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/1291 (36%), Positives = 670/1291 (51%), Gaps = 185/1291 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC    + C GH GHI+L V VYN   F+ L+ LL+  C +CH F+ SR ++     K
Sbjct: 63   CTTCRLNSWSCNGHAGHIELPVHVYNVTFFDQLFRLLRAQCVYCHRFRMSRADIMSYTCK 122

Query: 61   LELIIKGDIIAAKSLD-LDLPSESSNPEDS----------------DVSNKSSCSMVTPR 103
            L L+  G +  A ++D +++     N                    DV  K     V  R
Sbjct: 123  LRLLQYGLVEEAAAIDSMEIRRGKGNAGSESGDSEDEDEEDLVRRRDVYVKRCIHQVLAR 182

Query: 104  GNYDNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGM 163
                N  +       + Q      A L+ +     KC +C   +P   +  +  I    +
Sbjct: 183  NKEGNFLHGTKNPVAAEQRRNIVRAFLKDI-TAVKKCASCSGISPPFRRDKYSKIFKKPL 241

Query: 164  PH-ADIRAN-----------LIRGCN----------LGETFSG--GEEEKDLGASSDVDA 199
            P  A I  +           LI+  N           G   +G   +++ D   S+D+  
Sbjct: 242  PQKAKIAMSEAGFHVPNPLLLIKEANDLSKKHGHQSQGSNMNGYLEDDDDDASVSTDLHG 301

Query: 200  PETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPS-DVKDIIEKLWENE 258
             E     G    TQ       ++GS   PS    Q+       +PS +V   +  L+E E
Sbjct: 302  AEQQITMGNAVLTQ-----VEERGSRNNPSEQGAQQ------FMPSPEVYAALRLLFEKE 350

Query: 259  FELCSFISDMQQQGFGK-KAGHSIFFLGVVLVPPIKFR-LPSKGGDSVMEHPQTVLLSKV 316
             E+   + D + +   + +    +FF+  +LVPP K+R + + G + ++E  Q +  +++
Sbjct: 351  QEVLDLVYDSRPKSNHRPRVTPDMFFIKNILVPPNKYRPIAASGSNDIIEAQQNISFTRI 410

Query: 317  LQANIYL----------ANAYVNQPDNAKVIVARWMNLQQSVNVLFD-----GKNAAGQR 361
            ++    +          +   V +  + + ++   + LQ +VN L D      + AAG +
Sbjct: 411  MKLCDQINQISRERQGDSTESVTRLRDYRDLLQAIVQLQDAVNSLIDRDRNPNQGAAGIQ 470

Query: 362  DMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPER 421
            +   GI Q LEKK+GLFR+ +MGKRVN+A RSVISPDP +  NEIG+P  FA +LTYPE 
Sbjct: 471  N-EDGIKQRLEKKDGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEP 529

Query: 422  VTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAI---- 477
            VT  N  +L++++ING +++PGA    +++  +         +S+  K    R AI    
Sbjct: 530  VTNHNYWELKNAVINGPDVYPGAAAVENEVGQV---------VSLKFKSQEERLAIANML 580

Query: 478  VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 537
            + P          K VYRHL  GDVVL+NRQPTLHKPSIM H  RVL GE+T+RMHYANC
Sbjct: 581  LSPSNFKMKRSRSKKVYRHLTTGDVVLMNRQPTLHKPSIMGHRARVLTGERTIRMHYANC 640

Query: 538  STYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
             TYNADFDGDEMN+HFPQ+E++R EA  + + ++QY+  + G PLR LIQDHI      T
Sbjct: 641  KTYNADFDGDEMNLHFPQNELARVEAMQLADTDHQYLSATAGKPLRGLIQDHISMGTWFT 700

Query: 598  KKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWT 657
             +DTF ++D++ QLLY+             +P     ++    ++L + PAI +P  LWT
Sbjct: 701  SRDTFFDKDDYYQLLYN-----------CLRPENSHTVT---DKILLMKPAILRPRKLWT 746

Query: 658  GKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHK 717
            GKQVI+ ++ +IT              P+ F+                            
Sbjct: 747  GKQVISTIMMNIT--------------PERFYGLNL------------------------ 768

Query: 718  DKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQFADY--GL 774
              +GK +      PG+         +  E SEE  +I+++ +L+ G++D AQ      GL
Sbjct: 769  --TGKSR-----TPGD---------RWGEGSEEGQVIFRDGELLCGILDSAQLGPSPGGL 812

Query: 775  VHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEI 834
            +H+V E+YG   AG LL  L RL T FL M  FTCG+DDL + K    +R+  L  +E I
Sbjct: 813  IHSVHEIYGHVVAGKLLGVLGRLLTKFLHMRAFTCGIDDLRLTKKGNEDRRKKLQEAEHI 872

Query: 835  GKRVHLEALELEDGA-EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVIN 893
            G+ V L+ + L+    E +  +LK  +E A+R   D   A  D  + SQ     SS +  
Sbjct: 873  GRHVALKYVTLDQTKFEDEEAELKRRLEDALR--DDEKQAGLDAVLNSQA-ADISSDITA 929

Query: 894  ELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSF 953
              L  GL KP   N +  MTTSGAKGS VN   IS +LGQQ LEG+RVP M+SGKTLPSF
Sbjct: 930  ACLPVGLEKPFPWNQMQTMTTSGAKGSVVNANLISCNLGQQVLEGRRVPVMISGKTLPSF 989

Query: 954  HPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLEC 1013
             P+D    A GF+  RFLTG++PQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E 
Sbjct: 990  RPFDTNLMASGFVSGRFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEG 1049

Query: 1014 LKISYDYSVRD-ADGSIVQFCYGEDGVDVHQTSFISKFDALAARERG---RGRGRNKFCD 1069
            LK  YD SVR+ ADGS++QF YGEDG+++ +   +  F  LA           G ++F  
Sbjct: 1050 LKAEYDNSVRETADGSVMQFLYGEDGLEITKQKHLQDFPFLAHNFWSVVEELNGSDEFNR 1109

Query: 1070 -KGSHTFVMGRNQEMIYKKCSGQLD-----------------ASNAYIMELPDALKDNAE 1111
             K        R+    Y+K +G+LD                  S  + M L    KDN +
Sbjct: 1110 VKSDKAGDWNRHAIKKYRK-TGKLDCVDPALSLFPPGSCYGSTSETFAMALKLYQKDNPD 1168

Query: 1112 KFADK--FLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            +   +   +   ++K+DF +++  K++ S+ +PGE VG++A QS+GEPSTQMTLNTFHLA
Sbjct: 1169 QILKEKGKVEKGISKKDFARVMNLKYMRSVVEPGESVGIVAGQSIGEPSTQMTLNTFHLA 1228

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
            G    NVTLGIPRL+EI+  AS  I TP +T
Sbjct: 1229 GHSAKNVTLGIPRLREIVMTASNQILTPTMT 1259


>gi|303317604|ref|XP_003068804.1| DNA-directed RNA polymerase II largest subunit, putative
            [Coccidioides posadasii C735 delta SOWgp]
 gi|240108485|gb|EER26659.1| DNA-directed RNA polymerase II largest subunit, putative
            [Coccidioides posadasii C735 delta SOWgp]
          Length = 1690

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/1284 (36%), Positives = 666/1284 (51%), Gaps = 169/1284 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC    + C GH GHI+L V VYN   F+ L+ LLK  C +CH F+ S+ ++   V K
Sbjct: 63   CTTCRLNAWSCAGHSGHIELPVHVYNVTFFDQLFRLLKAQCIYCHRFRMSKIQINTYVCK 122

Query: 61   LELIIKGDIIAAKSL-DLDLPSESSNPEDS--------------DVSNKSSCSMVTPRGN 105
            L L+  G +  A ++  ++L     N  D               D  N      ++   +
Sbjct: 123  LRLLQYGLVEEASTIGTMELRKGKHNKGDGESDSSEDEDEEDLIDRRNAYVQKCISGLAS 182

Query: 106  YDNVRNLKPQEWTSLQFAEAKLALLQ-FLK--IETTKCGNCKAKNPRISKPTFGWIHMNG 162
            Y   +N           AE +  L++ FLK      KC +C   +P   +  +  I    
Sbjct: 183  YKTRQNYMKMAKNPAA-AEMRRNLVRDFLKDVANVKKCASCSGISPPYRRDRYSKIFRKS 241

Query: 163  MPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPG------TQDTA 216
            +P     A +  G  +       EE   L         E  S NG          T+   
Sbjct: 242  LPQKAKAAMVAAGFQIPNPLVLMEEANRLSKKHKTIQNED-SVNGIIDDGNISVITETHG 300

Query: 217  ARRHQKGSGAVPSGFKKQKDLFSGPLL--------PSDVKDIIEKLWENEFELCSFISDM 268
            A +      AV +  +  +   +G  L         S+V   +  L+E E E+   + D 
Sbjct: 301  AEQQVSMGNAVLAAVEDTESSEAGGQLDDSQQYIPSSEVYASVRFLFEKEQEILDLVYD- 359

Query: 269  QQQGFGKKA--GHSIFFLGVVLVPPIKFRLPSKGG-DSVMEHPQTVLLSKVLQANIYLAN 325
             + G G+++     +FF+  +LVPP K+R  ++ G   +ME  Q    +++L+    +  
Sbjct: 360  SRPGSGRRSHVNADMFFIKNLLVPPNKYRPAAQQGPGQIMEAQQNTSFTRILKLCDQINQ 419

Query: 326  -AYVNQPDNAKVI---------VARWMNLQQSVNVLFD-----GKNAAGQRDMASGICQL 370
             +   Q DN + I         +   + LQ +VN L D      + AAG ++   GI Q 
Sbjct: 420  ISRERQGDNGESISRIRSYRDLLHAIVQLQDAVNSLIDRDRNPAQGAAGIQN-EDGIKQR 478

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            LEKK+GLFR+ +MGKRVN+A RSVISPDP +  NEIGIP  FA +LTYPE VT  N  +L
Sbjct: 479  LEKKDGLFRKNMMGKRVNFAARSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWEL 538

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKM--RISIGRKLDTSRGAIVQPGKDSDNEF 488
            + ++ING +I+PGA    ++L  +     K +  RI+I   L       + P        
Sbjct: 539  KQAVINGPDIYPGAAAVENELGQVVNLKFKSVDERIAIANML-------LSPSNWKLKRS 591

Query: 489  EGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 548
              K VYRHL  GDVVL+NRQPTLHKPSIM H  RVL GE+T+RMHYANC+TYNADFDGDE
Sbjct: 592  RNKKVYRHLTTGDVVLMNRQPTLHKPSIMGHRARVLTGERTIRMHYANCNTYNADFDGDE 651

Query: 549  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
            MN+HFPQ+E++RAEA  + + ++QY+  ++G PLR LIQDHI      T +D+  + +++
Sbjct: 652  MNLHFPQNEIARAEAMQLADTDHQYLVATSGKPLRGLIQDHISMGTWFTSRDSLFDEEDY 711

Query: 609  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
             QLLYS             +P     +S  + E++P  P I KP+P WTGKQ+I+ +L +
Sbjct: 712  HQLLYS-----------CLRPENSHTVS-EKIELMP--PTILKPKPRWTGKQIISTILKN 757

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
            IT              P+                          N+   +  GK      
Sbjct: 758  IT--------------PE--------------------------NRAGLNLIGK-----S 772

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNT 786
              PG+  E    + K        +++   +L+ G++DKAQ      GL+H+V E++G   
Sbjct: 773  STPGDRWEIGSEEGK--------VIVKDGELLCGILDKAQLGPSAGGLIHSVHEVFGHVV 824

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE 846
            AG L+  L RL T FLQM  FTCG+DDL + K  + ERK  L   + +G  V L+ + L+
Sbjct: 825  AGKLIGILGRLLTRFLQMRAFTCGMDDLRLTKKGDEERKKQLKRGDNLGHEVALQYVTLD 884

Query: 847  DG-AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHT---SSSVINELLSEGLLK 902
            +   E    +L+  +E  +R   D   A  D    S  N  T   SS +    L  GL K
Sbjct: 885  ESPVEDKETELQRRLEDVLR--DDEKQAGLD----SMFNSRTAGLSSDITAACLPSGLEK 938

Query: 903  PTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRA 962
            P   N +  MT SGAKGS VN   IS +LGQQ LEG+RVP M+SGKTLPSF P++    A
Sbjct: 939  PFPWNQMQAMTVSGAKGSVVNANLISCNLGQQVLEGRRVPVMISGKTLPSFKPFETKLVA 998

Query: 963  GGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSV 1022
            GG++  RFLTG++PQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E LK  YD SV
Sbjct: 999  GGYVSGRFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDNSV 1058

Query: 1023 RD-ADGSIVQFCYGEDGVDVHQTSFISKFDALAARE---RGRGRGRNKFCDKGSHTFVMG 1078
            RD  DG++VQF YGEDG+D+ +   +  F  LA        +  G ++F     H+ V  
Sbjct: 1059 RDTTDGTLVQFLYGEDGLDITKQKHLQDFSFLAQNYLSILSQVNGMDEF--NKVHSEVAA 1116

Query: 1079 R-NQEMIYK-KCSGQLDASNAYIME-------------LPDALKDNAEKFADKFLSNE-- 1121
            + N+  I K K +GQ+DA +  +                  ALK+  +K  DK L ++  
Sbjct: 1117 KWNKSAIKKVKRTGQVDAKDPVLAHYHPGANFGSTSESFATALKEYEKKNPDKLLKDKGQ 1176

Query: 1122 ----MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVT 1177
                ++K+DF  ++  K++ S+  PGE VG++A QS+GEPSTQMTLNTFHLAG    NVT
Sbjct: 1177 GIDGISKKDFEHIMNMKYMRSVVDPGEAVGIVAGQSIGEPSTQMTLNTFHLAGHSAKNVT 1236

Query: 1178 LGIPRLQEILTIASKDIKTPVITC 1201
            LGIPRL+EI+  AS  I TP ++ 
Sbjct: 1237 LGIPRLREIVMTASTQILTPTMSA 1260


>gi|325090322|gb|EGC43632.1| RNA polymerase I largest subunit [Ajellomyces capsulatus H88]
          Length = 1697

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/1294 (36%), Positives = 668/1294 (51%), Gaps = 185/1294 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC    + C GH GHI+L V VYN   F+ L+ LL+  C +CH F+ SR ++     K
Sbjct: 63   CTTCRLNSWSCNGHAGHIELPVHVYNVTFFDQLFRLLRAQCVYCHRFRMSRADIMSYTCK 122

Query: 61   LELIIKGDIIAAKSLD-LDLPSESSNPEDS----------------DVSNKSSCSMVTPR 103
            L L+  G +  A ++D +++     N                    DV  K     V  R
Sbjct: 123  LRLLQYGLVEEAAAIDSMEIRRGKGNAGSESGDSEDEDEEDLVRRRDVYVKRCIHQVLAR 182

Query: 104  GNYDNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGM 163
                N  +       + Q      A L+ +     KC +C   +P   +  +  I    +
Sbjct: 183  NKEGNFLHGTKNPVAAEQRRNIVRAFLKDI-TAVKKCASCSGISPPFRRDKYSKIFKKPL 241

Query: 164  P------------HADIRANLIRGCN----------LGETFSG--GEEEKDLGASSDVDA 199
            P            H      LI+  N           G   +G   +++ D   S+D+  
Sbjct: 242  PQKAKVAMSEAGFHVPNPLLLIKEANDLSKKHGHQSQGSNMNGYLEDDDDDASVSTDLHG 301

Query: 200  PETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPS-DVKDIIEKLWENE 258
             E     G    TQ       ++GS   PS    Q+       +PS +V   +  L+E E
Sbjct: 302  AEQQITMGNAVLTQ-----VEERGSRNNPSEQGAQQ------FMPSPEVYAALRLLFEKE 350

Query: 259  FELCSFISDMQQQGFGK-KAGHSIFFLGVVLVPPIKFR-LPSKGGDSVMEHPQTVLLSKV 316
             E+   + D + +   + +    +FF+  +LVPP K+R + + G + ++E  Q +  +++
Sbjct: 351  QEVLDLVYDSRPKSNHRPRVTPDMFFIKNILVPPNKYRPIAASGSNDIIEAQQNISFTRI 410

Query: 317  LQANIYL----------ANAYVNQPDNAKVIVARWMNLQQSVNVLFD-----GKNAAGQR 361
            ++    +          +   V +  + + ++   + LQ +VN L D      + AAG +
Sbjct: 411  MKLCDQINQISRERQGDSTESVTRLRDYRDLLQAIVQLQDAVNSLIDRDRNPNQGAAGIQ 470

Query: 362  DMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPER 421
            +   GI Q LEKK+GLFR+ +MGKRVN+A RSVISPDP +  NEIG+P  FA +LTYPE 
Sbjct: 471  N-EDGIKQRLEKKDGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEP 529

Query: 422  VTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAI---- 477
            VT  N  +L++++ING +++PGA    +++  +         +S+  K    R AI    
Sbjct: 530  VTNHNYWELKNAVINGPDVYPGAAAVENEVGQV---------VSLKFKSQEERLAIANML 580

Query: 478  VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 537
            + P          K VYRHL  GDVV++NRQPTLHKPSIM H  RVL GE+T+RMHYANC
Sbjct: 581  LSPSNFKMKRSRSKKVYRHLTTGDVVIMNRQPTLHKPSIMGHRARVLTGERTIRMHYANC 640

Query: 538  STYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
             TYNADFDGDEMN+HFPQ+E++R EA  + + ++QY+  + G PLR LIQDHI      T
Sbjct: 641  KTYNADFDGDEMNLHFPQNELARVEAMQLADTDHQYLSATAGKPLRGLIQDHISMGTWFT 700

Query: 598  KKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWT 657
             +DTF ++D++ QLLY+             +P     ++    ++L + PAI +P  LWT
Sbjct: 701  SRDTFFDKDDYYQLLYN-----------CLRPENSHTVT---DKILLMKPAILRPRKLWT 746

Query: 658  GKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHK 717
            GKQVI+ ++ +IT              P+ F+                            
Sbjct: 747  GKQVISTIMMNIT--------------PERFYGLNL------------------------ 768

Query: 718  DKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQFADY--GL 774
              +GK +      PG+         +  E SEE  +I+++ +L+ G++D AQ      GL
Sbjct: 769  --TGKSR-----TPGD---------RWGEGSEEGQVIFRDGELLCGILDSAQLGPSPGGL 812

Query: 775  VHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEI 834
            +H+V E+YG   AG LL  L RL T FL M  FTCG+DDL + K    +R+  L  +E I
Sbjct: 813  IHSVHEIYGHVVAGKLLGVLGRLLTKFLHMRAFTCGIDDLRLTKKGNEDRRKKLQEAEHI 872

Query: 835  GKRVHLEALELEDGA-EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVIN 893
            G+ V L+ + L+    E +  +LK  +E A+R   D   A  D  + SQ     SS +  
Sbjct: 873  GRHVALKYVTLDQTKFEDEEAELKRRLEDALR--DDEKQAGLDAVLNSQA-ADISSDITA 929

Query: 894  ELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSF 953
              L  GL KP   N +  MTTSGAKGS VN   IS +LGQQ LEG+RVP M+SGKTLPSF
Sbjct: 930  ACLPVGLEKPFPWNQMQTMTTSGAKGSVVNANLISCNLGQQVLEGRRVPVMISGKTLPSF 989

Query: 954  HPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLEC 1013
             P+D    A GF+  RFLTG++PQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E 
Sbjct: 990  RPFDTNLMASGFVSGRFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEG 1049

Query: 1014 LKISYDYSVRD-ADGSIVQFCYGEDGVDVHQTSFISKFDALAARERG---RGRGRNKFCD 1069
            LK  YD SVR+  DGS++QF YGEDG+++ +   +  F  LA           G ++F  
Sbjct: 1050 LKAEYDNSVRETTDGSVMQFLYGEDGLEITKQKHLQDFPFLAHNFWSVVEELNGSDEFNR 1109

Query: 1070 -KGSHTFVMGRNQEMIYKKCSGQLD-----------------ASNAYIMELPDALKDNAE 1111
             K        R+    Y+K +G+LD                  S  + M L    KDN +
Sbjct: 1110 VKSDKAGDWNRHAIKKYRK-TGKLDCVDPALSLFPPGSCYGSTSETFAMALKLYQKDNPD 1168

Query: 1112 KFADK--FLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            +   +   +   ++K+DF +++  K++ S+ +PGE VG++A QS+GEPSTQMTLNTFHLA
Sbjct: 1169 QILKEKGKVEKGISKKDFARVMNLKYMRSVVEPGESVGIVAGQSIGEPSTQMTLNTFHLA 1228

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            G    NVTLGIPRL+EI+  AS  I TP +T  L
Sbjct: 1229 GHSAKNVTLGIPRLREIVMTASNQILTPTMTSVL 1262


>gi|218198539|gb|EEC80966.1| hypothetical protein OsI_23688 [Oryza sativa Indica Group]
          Length = 1350

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/849 (44%), Positives = 518/849 (61%), Gaps = 98/849 (11%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           CK+CGQ+   CPGHFGHI+L  P++NPLLF  L  LL+  CF CH F+ ++ +V++   +
Sbjct: 159 CKSCGQQSIRCPGHFGHIELAKPLFNPLLFMSLKNLLQVTCFHCHKFRLNKEQVDRYTNE 218

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
           LEL+++GDI  AK+L+ DL  +  + ED +    S     + R   +N      + WTS+
Sbjct: 219 LELLVRGDIAHAKNLE-DLGGKVLSKEDDETEATSGDK--SARSEREN------KTWTSI 269

Query: 121 QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNL-G 179
           Q  EA     + +K    KC +C+ KNP I  P +GW+ +     + +RAN I    L G
Sbjct: 270 QLKEALSIFSKLMKKRQKKCAHCEKKNPIIKNPIYGWL-IKDTTSSSVRANAIANAKLSG 328

Query: 180 ETFSGGEEEKDL-GASSDVDAPET---HSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQK 235
           +       E  + G   ++ +P T    S N T   + DT           V S  KK  
Sbjct: 329 DGHVNDSRETGVSGLDEELTSPGTLSRRSTNETRRISDDTIKE-------MVASSGKKH- 380

Query: 236 DLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPI 292
                 LL ++V+ I++ LW+ E   C  + D QQ       K+ G+ +FFL  +LV P 
Sbjct: 381 ------LLTTEVESILKDLWKKEARFCMLLCDFQQNTLSVSEKRRGYEMFFLKNLLVAPN 434

Query: 293 KFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLF 352
           +FR        +MEHPQ VLLSKV ++N+ L  +      N   ++ RWM+LQ++VNVL+
Sbjct: 435 RFRPSISSSLGIMEHPQNVLLSKVQESNLALQQSIA--ASNHMEVLRRWMDLQRNVNVLY 492

Query: 353 DG-KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
           D  K  +     A+GI QLLEKKEG+ RQK+MGKRVNYACR  I          I I   
Sbjct: 493 DSSKGLSKNEKNANGIRQLLEKKEGILRQKMMGKRVNYACRFYI----------ISI--- 539

Query: 412 FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLD 471
               L + ++VTPWN  KL+++I NGA+IHPGATHY D  +  +L      R +I + L 
Sbjct: 540 ----LFHVQKVTPWNARKLQEAINNGADIHPGATHYRDNNNMYKLQAAPPKRRAIAKMLP 595

Query: 472 TSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLR 531
            SRG+I QPGKD   EFE K+VYRHLQDGDVVLVNRQPTLHKPS+MAHVVRVL GEKT+R
Sbjct: 596 ASRGSISQPGKDPKCEFESKVVYRHLQDGDVVLVNRQPTLHKPSMMAHVVRVLPGEKTIR 655

Query: 532 MHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIV 591
           MHYANCSTYNADFDGDEMNVHFPQDE+SRAEA NIV+AN QY+ P +GD +R LIQDHI+
Sbjct: 656 MHYANCSTYNADFDGDEMNVHFPQDEISRAEAINIVDANKQYIGPRSGDAVRGLIQDHII 715

Query: 592 SAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWK 651
            A LLTK DTFL+R+E+ QL+Y S +SS+     +G+ G+++ I   +  + P+ PAIWK
Sbjct: 716 GAVLLTKLDTFLSREEYNQLVYGSVLSST---RRSGQFGKKISIIMDDDALEPVPPAIWK 772

Query: 652 PEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSK 711
           P+PLWTGKQVIT +LNH+T+GRPPF VE+ G++ +++                       
Sbjct: 773 PKPLWTGKQVITTILNHVTKGRPPFTVEKKGRIEKEYL---------------------- 810

Query: 712 TNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD 771
              + ++++G K + +                    SE+ L ++ N+L++G+IDKAQF +
Sbjct: 811 ---IPEERNGDKVKTINP------------------SEQVLYVHDNELIKGMIDKAQFGN 849

Query: 772 YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGS 831
           YG+VHTV ELYG  TAG LLS+ SRLFT+ LQ+HGFTCGVDDLL+ ++ +  R+  L  S
Sbjct: 850 YGIVHTVHELYGPETAGVLLSSFSRLFTMVLQLHGFTCGVDDLLLSQESDMTREEILGKS 909

Query: 832 EEIGKRVHL 840
           E+  K VH+
Sbjct: 910 EKHSKIVHV 918



 Score =  259 bits (661), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 138/238 (57%), Positives = 163/238 (68%), Gaps = 12/238 (5%)

Query: 818  KDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDM 877
            +D E E   H     E     H +     +G + D +KL+ E+EK +R  G++A    D 
Sbjct: 962  EDHEAEDSTHPKEDHEAEDSTHPKEDHEAEGDDEDQMKLQMEVEKIIRRNGESATVILDR 1021

Query: 878  KMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELE 937
             M+S+LN  TS  V  ++   GL KP   N +SLMT +GAKG  VN  QISS LGQQELE
Sbjct: 1022 NMSSELNTLTSK-VNKKVFPYGLRKPFPGNCLSLMTQTGAKGGLVNMTQISSLLGQQELE 1080

Query: 938  GKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKT 997
            GKRVPRM+SGKTLP F PWD + RAGGFI DRFLTGLRPQEYYFHCMAGREGLVDTAVKT
Sbjct: 1081 GKRVPRMISGKTLPCFPPWDTSSRAGGFIGDRFLTGLRPQEYYFHCMAGREGLVDTAVKT 1140

Query: 998  SRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFI-SKFDALA 1054
            SRSGYLQRCLIK+LE LK+SYD++          FCYGEDGVDV +TSF+  KF  L+
Sbjct: 1141 SRSGYLQRCLIKSLESLKVSYDHT----------FCYGEDGVDVLKTSFLDDKFRELS 1188


>gi|240278768|gb|EER42274.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus H143]
          Length = 1676

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/1294 (36%), Positives = 668/1294 (51%), Gaps = 185/1294 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC    + C GH GHI+L V VYN   F+ L+ LL+  C +CH F+ SR ++     K
Sbjct: 63   CTTCRLNSWSCNGHAGHIELPVHVYNVTFFDQLFRLLRAQCVYCHRFRMSRADIMSYTCK 122

Query: 61   LELIIKGDIIAAKSLD-LDLPSESSNPEDS----------------DVSNKSSCSMVTPR 103
            L L+  G +  A ++D +++     N                    DV  K     V  R
Sbjct: 123  LRLLQYGLVEEAAAIDSMEIRRGKGNAGSESGDSEDEDEEDLVRRRDVYVKRCIHQVLAR 182

Query: 104  GNYDNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGM 163
                N  +       + Q      A L+ +     KC +C   +P   +  +  I    +
Sbjct: 183  NKEGNFLHGTKNPVAAEQRRNIVRAFLKDI-TAVKKCASCSGISPPFRRDKYSKIFKKPL 241

Query: 164  P------------HADIRANLIRGCN----------LGETFSG--GEEEKDLGASSDVDA 199
            P            H      LI+  N           G   +G   +++ D   S+D+  
Sbjct: 242  PQKAKVAMSEAGFHVPNPLLLIKEANDLSKKHGHQSQGSNMNGYLEDDDDDASVSTDLHG 301

Query: 200  PETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPS-DVKDIIEKLWENE 258
             E     G    TQ       ++GS   PS    Q+       +PS +V   +  L+E E
Sbjct: 302  AEQQITMGNAVLTQ-----VEERGSRNNPSEQGAQQ------FMPSPEVYAALRLLFEKE 350

Query: 259  FELCSFISDMQQQGFGK-KAGHSIFFLGVVLVPPIKFR-LPSKGGDSVMEHPQTVLLSKV 316
             E+   + D + +   + +    +FF+  +LVPP K+R + + G + ++E  Q +  +++
Sbjct: 351  QEVLDLVYDSRPKSNHRPRVTPDMFFIKNILVPPNKYRPIAASGSNDIIEAQQNISFTRI 410

Query: 317  LQANIYL----------ANAYVNQPDNAKVIVARWMNLQQSVNVLFD-----GKNAAGQR 361
            ++    +          +   V +  + + ++   + LQ +VN L D      + AAG +
Sbjct: 411  MKLCDQINQISRERQGDSTESVTRLRDYRDLLQAIVQLQDAVNSLIDRDRNPNQGAAGIQ 470

Query: 362  DMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPER 421
            +   GI Q LEKK+GLFR+ +MGKRVN+A RSVISPDP +  NEIG+P  FA +LTYPE 
Sbjct: 471  N-EDGIKQRLEKKDGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEP 529

Query: 422  VTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAI---- 477
            VT  N  +L++++ING +++PGA    +++  +         +S+  K    R AI    
Sbjct: 530  VTNHNYWELKNAVINGPDVYPGAAAVENEVGQV---------VSLKFKSQEERLAIANML 580

Query: 478  VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 537
            + P          K VYRHL  GDVV++NRQPTLHKPSIM H  RVL GE+T+RMHYANC
Sbjct: 581  LSPSNFKMKRSRSKKVYRHLTTGDVVIMNRQPTLHKPSIMGHRARVLTGERTIRMHYANC 640

Query: 538  STYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
             TYNADFDGDEMN+HFPQ+E++R EA  + + ++QY+  + G PLR LIQDHI      T
Sbjct: 641  KTYNADFDGDEMNLHFPQNELARVEAMQLADTDHQYLSATAGKPLRGLIQDHISMGTWFT 700

Query: 598  KKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWT 657
             +DTF ++D++ QLLY+             +P     ++    ++L + PAI +P  LWT
Sbjct: 701  SRDTFFDKDDYYQLLYN-----------CLRPENSHTVT---DKILLMKPAILRPRKLWT 746

Query: 658  GKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHK 717
            GKQVI+ ++ +IT              P+ F+                            
Sbjct: 747  GKQVISTIMMNIT--------------PERFYGLNL------------------------ 768

Query: 718  DKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQFADY--GL 774
              +GK +      PG+         +  E SEE  +I+++ +L+ G++D AQ      GL
Sbjct: 769  --TGKSR-----TPGD---------RWGEGSEEGQVIFRDGELLCGILDSAQLGPSPGGL 812

Query: 775  VHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEI 834
            +H+V E+YG   AG LL  L RL T FL M  FTCG+DDL + K    +R+  L  +E I
Sbjct: 813  IHSVHEIYGHVVAGKLLGVLGRLLTKFLHMRAFTCGIDDLRLTKKGNEDRRKKLQEAEHI 872

Query: 835  GKRVHLEALELEDGA-EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVIN 893
            G+ V L+ + L+    E +  +LK  +E A+R   D   A  D  + SQ     SS +  
Sbjct: 873  GRHVALKYVTLDQTKFEDEEAELKRRLEDALR--DDEKQAGLDAVLNSQA-ADISSDITA 929

Query: 894  ELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSF 953
              L  GL KP   N +  MTTSGAKGS VN   IS +LGQQ LEG+RVP M+SGKTLPSF
Sbjct: 930  ACLPVGLEKPFPWNQMQTMTTSGAKGSVVNANLISCNLGQQVLEGRRVPVMISGKTLPSF 989

Query: 954  HPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLEC 1013
             P+D    A GF+  RFLTG++PQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E 
Sbjct: 990  RPFDTNLMASGFVSGRFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEG 1049

Query: 1014 LKISYDYSVRD-ADGSIVQFCYGEDGVDVHQTSFISKFDALAARERG---RGRGRNKFCD 1069
            LK  YD SVR+  DGS++QF YGEDG+++ +   +  F  LA           G ++F  
Sbjct: 1050 LKAEYDNSVRETTDGSVMQFLYGEDGLEITKQKHLQDFPFLAHNFWSVVEELNGSDEFNR 1109

Query: 1070 -KGSHTFVMGRNQEMIYKKCSGQLD-----------------ASNAYIMELPDALKDNAE 1111
             K        R+    Y+K +G+LD                  S  + M L    KDN +
Sbjct: 1110 VKSDKAGDWNRHAIKKYRK-TGKLDCVDPALSLFPPGSCYGSTSETFAMALKLYQKDNPD 1168

Query: 1112 KFADK--FLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            +   +   +   ++K+DF +++  K++ S+ +PGE VG++A QS+GEPSTQMTLNTFHLA
Sbjct: 1169 QILKEKGKVEKGISKKDFARVMNLKYMRSVVEPGESVGIVAGQSIGEPSTQMTLNTFHLA 1228

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            G    NVTLGIPRL+EI+  AS  I TP +T  L
Sbjct: 1229 GHSAKNVTLGIPRLREIVMTASNQILTPTMTSVL 1262


>gi|119186661|ref|XP_001243937.1| hypothetical protein CIMG_03378 [Coccidioides immitis RS]
 gi|392870658|gb|EAS32476.2| DNA-directed RNA polymerase I subunit [Coccidioides immitis RS]
          Length = 1690

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/1283 (37%), Positives = 665/1283 (51%), Gaps = 167/1283 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC    + C GH GHI+L V VYN   F+ L+ LLK  C +CH F+ S+ ++   V K
Sbjct: 63   CTTCRLNAWSCAGHSGHIELPVQVYNVTFFDQLFRLLKAQCIYCHRFRMSKIQINTYVCK 122

Query: 61   LELIIKGDIIAAKSL-DLDLPSESSNPEDS--------------DVSNKSSCSMVTPRGN 105
            L L+  G +  A ++  ++L     N ED               D  N      ++   +
Sbjct: 123  LRLLQYGLVEEASTIGTMELRKGKHNKEDGESDSSEDEDEEDLIDRRNAYVQKCISGLAS 182

Query: 106  YDNVRNLKPQEWTSLQFAEAKLALLQ-FLK--IETTKCGNCKAKNPRISKPTFGWIHMNG 162
            Y   +N           AE +  L++ FLK      KC +C   +P   +  +  I    
Sbjct: 183  YKTRQNYMKMAKNPAA-AEMRRNLVRDFLKDVASVKKCASCSGISPPYRRDRYSKIFRKS 241

Query: 163  MPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPG------TQDTA 216
            +P     A +  G  +       EE   L         E  S NG          T+   
Sbjct: 242  LPQKAKAAMVAAGFQIPNPLVLMEEANRLSKKHKTIQKE-DSVNGIIDDGNISVITETHG 300

Query: 217  ARRHQKGSGAVPSGFKK--------QKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDM 268
            A +      AV +  +         Q D     +  S+V   +  L+E E E+   + D 
Sbjct: 301  AEQQVSMGNAVLAAVEDTGSSEIGGQLDDSQQYIPSSEVYASVRFLFEKEQEILDLVYD- 359

Query: 269  QQQGFGKKA--GHSIFFLGVVLVPPIKFRLPSKGG-DSVMEHPQTVLLSKVLQANIYLAN 325
             + G G+++     +FF+  +LVPP K+R  ++ G   +ME  Q    +++L+    +  
Sbjct: 360  SRPGSGRRSHVNADMFFIKNLLVPPNKYRPAAQQGPGQIMEAQQNTSFTRILKLCDQINQ 419

Query: 326  -AYVNQPDNAKVI---------VARWMNLQQSVNVLFD-----GKNAAGQRDMASGICQL 370
             +   Q DN + I         +   + LQ +VN L D      + AAG ++   GI Q 
Sbjct: 420  ISRERQGDNGESISRIRSYRDLLHAIVQLQDAVNSLIDRDRNPAQGAAGIQN-EDGIKQR 478

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            LEKK+GLFR+ +MGKRVN+A RSVISPDP +  NEIGIP  FA +LTYPE VT  N  +L
Sbjct: 479  LEKKDGLFRKNMMGKRVNFAARSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWEL 538

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKM--RISIGRKLDTSRGAIVQPGKDSDNEF 488
            + ++ING +I+PGA    ++L  +     K +  RI+I   L       + P        
Sbjct: 539  KQAVINGPDIYPGAAAVENELGQVVNLKFKSVDERIAIANML-------LSPSNWKLKRS 591

Query: 489  EGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 548
              K VYRHL  GDVVL+NRQPTLHKPSIM H  RVL GE+T+RMHYANC+TYNADFDGDE
Sbjct: 592  RNKKVYRHLTTGDVVLMNRQPTLHKPSIMGHRARVLTGERTIRMHYANCNTYNADFDGDE 651

Query: 549  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
            MN+HFPQ+E++RAEA  + + ++QY+  ++G PLR LIQDHI      T +D+  + +++
Sbjct: 652  MNLHFPQNEIARAEAMQLADTDHQYLVATSGKPLRGLIQDHISMGTWFTSRDSLFDEEDY 711

Query: 609  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
             QLLYS             +P     +S  + E++P  P I KP+P WTGKQ+I+ +L +
Sbjct: 712  HQLLYS-----------CLRPENSHTVS-EKIELMP--PTILKPKPRWTGKQIISTILKN 757

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
            IT              P+                          N+   +  GK      
Sbjct: 758  IT--------------PE--------------------------NRAGLNLIGK-----S 772

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNT 786
              PG+  E    + K        +++   +L+ G++DKAQ      GL+H+V E++G   
Sbjct: 773  STPGDRWEIGSEEGK--------VIVKDGELLCGILDKAQLGPSAGGLIHSVHEVFGHVV 824

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE 846
            AG L+  L RL T FLQM  FTCG+DDL + K  + ERK  L   + +G  V L+ + L+
Sbjct: 825  AGKLIGILGRLLTRFLQMRAFTCGMDDLRLTKKGDEERKKQLKRGDNLGHEVALQYVTLD 884

Query: 847  DG-AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHT---SSSVINELLSEGLLK 902
            +   E    +L+  +E  +R   D   A  D    S  N  T   SS +    L  GL K
Sbjct: 885  ESPVEDKETELQRRLEDVLR--DDEKQAGLD----SMFNSRTAGLSSDITAACLPSGLEK 938

Query: 903  PTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRA 962
            P   N +  MT SGAKGS VN   IS +LGQQ LEG+RVP M+SGKTLPSF P++    A
Sbjct: 939  PFPWNQMQAMTVSGAKGSVVNANLISCNLGQQVLEGRRVPVMISGKTLPSFKPFETKLVA 998

Query: 963  GGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSV 1022
            GG++  RFLTG++PQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E LK  YD SV
Sbjct: 999  GGYVSGRFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDNSV 1058

Query: 1023 RD-ADGSIVQFCYGEDGVDVHQTSFISKFDALAARE---RGRGRGRNKFCDKGSHTFVMG 1078
            RD  DG++VQF YGEDG+D+ +   +  F  LA        +  G ++F +K +      
Sbjct: 1059 RDTTDGTLVQFLYGEDGLDITKQKHLQDFSFLAQNYLSILSQVNGMDEF-NKVNSEVAAK 1117

Query: 1079 RNQEMIYK-KCSGQLDASNAYIME-------------LPDALKDNAEKFADKFLSNE--- 1121
             N+  I K K +GQ+DA +  +                  ALK+  +K  DK L ++   
Sbjct: 1118 WNKSAIKKVKKTGQVDAKDPVLAHYHPGANFGSTSESFATALKEYEKKNPDKLLKDKGQG 1177

Query: 1122 ---MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTL 1178
               ++K+DF  ++  K++ S+  PGE VG++A QS+GEPSTQMTLNTFHLAG    NVTL
Sbjct: 1178 IDGISKKDFEHIMNMKYMRSVVDPGEAVGIVAGQSIGEPSTQMTLNTFHLAGHSAKNVTL 1237

Query: 1179 GIPRLQEILTIASKDIKTPVITC 1201
            GIPRL+EI+  AS  I TP ++ 
Sbjct: 1238 GIPRLREIVMTASTQILTPTMSA 1260


>gi|159131514|gb|EDP56627.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Aspergillus
            fumigatus A1163]
          Length = 1680

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/1273 (36%), Positives = 659/1273 (51%), Gaps = 152/1273 (11%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q  + C GH GHI+L V VYN   F+ LY LL+  C +CH F+ +R ++   V K
Sbjct: 63   CTTCRQNSWSCTGHPGHIELPVRVYNVTFFDQLYRLLRAQCVYCHRFQMARVQINAYVCK 122

Query: 61   LELIIKGDIIAAKSLDL------DLPSESSNPEDSDVSNKSSCSMVTPRGNY-------- 106
            L L+  G +   ++++       +    + + +DS    +    +V  R  Y        
Sbjct: 123  LRLLQYGLVDEVEAIEAMGTGQGNKKKSAKDADDSGSEEEDDDDLVARRNAYVKKVIREA 182

Query: 107  ---DNVRNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISKPTFGWIHMN 161
                 ++ +       +   + +  + QF K  +   KC +C   +P   +  F  I   
Sbjct: 183  HAAGRLKGIMSGAKNPMAAEQRRTLVKQFFKDLVSIKKCSSCSGISPSYRRDRFSKIFRK 242

Query: 162  GMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQ 221
             +P     A +  G     +    ++ K     +        S+          A     
Sbjct: 243  PLPEKSRLAMVQAGFQAPNSLILLQQAKKFDMKTKESMANGISYTANAVSESHGAEEEVA 302

Query: 222  KGSGAVPSG-FKKQKDLFSGPLLPS-DVKDIIEKLWENEFELCSFISDMQQQGFGK-KAG 278
            +G+  V     KK     +G  +PS +V   +  L+E E E+ S I + +     + K  
Sbjct: 303  RGNAVVAQAESKKSAAGDAGQYMPSPEVHAAMVLLFEKEKEILSLIYNSRPLPKKEAKVS 362

Query: 279  HSIFFLGVVLVPPIKFRLPS-KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNA--- 334
              +FF+  +LVPP K+R  + +G   +ME  Q    +++L+ N  + N    +  NA   
Sbjct: 363  PDMFFIKNILVPPNKYRPAAPQGPGEIMEAQQNTPFTQILK-NCDIINQISKERQNAGAD 421

Query: 335  --------KVIVARWMNLQQSVNVLFDGKN-----AAGQRDMASGICQLLEKKEGLFRQK 381
                    + ++   + LQ +VN L D +      AAGQ   A+GI Q+LEKKEGLFR+ 
Sbjct: 422  SVTRMRDYRDLLHAIVQLQDTVNGLIDKERGASGPAAGQ--AANGIKQILEKKEGLFRKN 479

Query: 382  LMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIH 441
            +MGKRVN+A RSVISPDP +  NEIG+P  FA +LTYPE VT  N  +++ ++ING + +
Sbjct: 480  MMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQAVINGPDKY 539

Query: 442  PGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG---KMVYRHLQ 498
            PGAT   ++L  +    N K +      LD       Q    S+   +G   K VYRHL 
Sbjct: 540  PGATAIENELGQV---TNLKFK-----SLDERTALANQLLAPSNWRMKGARNKKVYRHLT 591

Query: 499  DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
             GDVVL+NRQPTLHKPSIM H  RVL  E+ +RMHYANC+TYNADFDGDEMN+HFPQ+E+
Sbjct: 592  TGDVVLMNRQPTLHKPSIMGHKARVLANERVIRMHYANCNTYNADFDGDEMNMHFPQNEL 651

Query: 559  SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
            +RAEA  + +A++QY+  ++G PLR LIQDHI      T +DTF + +++ +LLYS    
Sbjct: 652  ARAEAMMLADADHQYLVATSGKPLRGLIQDHISMGTWFTCRDTFFDEEDYHELLYS---- 707

Query: 619  SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVV 678
                     +P     ++   Q V P L    KP+ LWTGKQVIT +L +I    PP   
Sbjct: 708  -------CLRPENSHTVTERIQLVEPTL---LKPKRLWTGKQVITTILKNIM---PP--- 751

Query: 679  ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 738
                                                    ++G   +     PG ++  E
Sbjct: 752  ---------------------------------------GRAGLNLKSKSSTPG-DRWGE 771

Query: 739  KNKSKEKELSEEKLLIYKN-DLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALS 795
             N+        E  +I+K+ +++ G++DK Q      GL+  + E+YG   AG L+S L 
Sbjct: 772  GNE--------EGTVIFKDGEMLCGILDKKQIGPTAGGLIDAIHEVYGHTIAGRLISILG 823

Query: 796  RLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP-I 854
            RL T +L M  FTCG+DDL + K+ +R RK  L  +  IG+ V L+ + L+     D   
Sbjct: 824  RLLTRYLNMRAFTCGIDDLRLTKEGDRLRKEKLSQAASIGREVALKYVTLDQTTVPDQDA 883

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
            +L+  +E  +R   D   +  D    ++  K  S+ +    L +GL KP   N +  MT 
Sbjct: 884  ELRRRLEDVLR--DDDKQSGLDSVSNARTAK-LSTEITQACLPKGLAKPFPWNQMQSMTI 940

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS VN   IS +LGQQ LEG+RVP M+SGKTLPSF  +D  P AGG++  RFLTG+
Sbjct: 941  SGAKGSSVNANLISCNLGQQVLEGRRVPVMISGKTLPSFRAFDTHPMAGGYVCGRFLTGI 1000

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD-ADGSIVQFC 1033
            +PQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E L+  YD SVR+ +DGSIVQF 
Sbjct: 1001 KPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRAEYDTSVRESSDGSIVQFL 1060

Query: 1034 YGEDGVDVHQTSFISKFDALAARERGRGRGRN---KFCDKGSHTFVMGRNQEMIYKKCSG 1090
            YGEDG+D+ +   +  FD L +      +  N    F +             M   + +G
Sbjct: 1061 YGEDGLDITKQVHLKDFDFLTSNYVSIMQSVNLTSDFHNLEKDEVTAWHKDAMKKVRKTG 1120

Query: 1091 QLDASNAYIM-------------ELPDALKDNAEKFADKFLSNE-------MAKQDFLKL 1130
            ++DA +  +                  ALK   +   DK L ++       ++K+ F  L
Sbjct: 1121 KVDAMDPVLSVYHPGGNLGSTSEAFSQALKKYEDTNPDKLLRDKKKNIDGLISKKAFNTL 1180

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            +  K++ S+  PGE VG++ASQS+GEPSTQMTLNTFHLAG    NVTLGIPRL+EI+  A
Sbjct: 1181 MNMKYLKSVVDPGEAVGIVASQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTA 1240

Query: 1191 SKDIKTPVITCPL 1203
            S  I TP +T  L
Sbjct: 1241 SAHIMTPTMTLIL 1253


>gi|320038801|gb|EFW20736.1| DNA-directed RNA polymerase 1 subunit RPA1 [Coccidioides posadasii
            str. Silveira]
          Length = 1690

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/1284 (36%), Positives = 665/1284 (51%), Gaps = 169/1284 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC    + C GH GHI+L V VYN   F+ L+ LLK  C +CH F+ S+ ++   V K
Sbjct: 63   CTTCRLNAWSCAGHSGHIELPVHVYNVTFFDQLFRLLKAQCIYCHRFRMSKIQINTYVCK 122

Query: 61   LELIIKGDIIAAKSL-DLDLPSESSNPEDS--------------DVSNKSSCSMVTPRGN 105
            L L+  G +  A ++  ++L     N  D               D  N      ++   +
Sbjct: 123  LRLLQYGLVEEASTIGTMELRKGKHNKGDGESDSSEDEDEEDLIDRRNAYVQKCISGLAS 182

Query: 106  YDNVRNLKPQEWTSLQFAEAKLALLQ-FLK--IETTKCGNCKAKNPRISKPTFGWIHMNG 162
            Y   +N           AE +  L++ FLK      KC +C   +P   +  +  I    
Sbjct: 183  YKTRQNYMKMAKNPAA-AEMRRNLVRDFLKDVANVKKCASCSGISPPYRRDRYSKIFRKS 241

Query: 163  MPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPG------TQDTA 216
            +P     A +  G  +       EE   L         E  S NG          T+   
Sbjct: 242  LPQKAKAAMVAAGFQIPNPLVLMEEANRLSKKHKTIQNED-SVNGIIDDGNISVITETHG 300

Query: 217  ARRHQKGSGAVPSGFKK--------QKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDM 268
            A +      AV +  +         Q D     +  S+V   +  L+E E E+   + D 
Sbjct: 301  AEQQVSMGNAVLAAVEDTGSSEPGGQLDDSQQYIPSSEVYASVRFLFEKEQEILDLVYD- 359

Query: 269  QQQGFGKKA--GHSIFFLGVVLVPPIKFRLPSKGG-DSVMEHPQTVLLSKVLQANIYLAN 325
             + G G+++     +FF+  +LVPP K+R  ++ G   +ME  Q    +++L+    +  
Sbjct: 360  SRPGSGRRSHVNADMFFIKNLLVPPNKYRPAAQQGPGQIMEAQQNTSFTRILKLCDQINQ 419

Query: 326  -AYVNQPDNAKVI---------VARWMNLQQSVNVLFD-----GKNAAGQRDMASGICQL 370
             +   Q DN + I         +   + LQ +VN L D      + AAG ++   GI Q 
Sbjct: 420  ISRERQGDNGESISRIRSYRDLLHAIVQLQDAVNSLIDRDRNPAQGAAGIQN-EDGIKQR 478

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            LEKK+GLFR+ +MGKRVN+A RSVISPDP +  NEIGIP  FA +LTYPE VT  N  +L
Sbjct: 479  LEKKDGLFRKNMMGKRVNFAARSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWEL 538

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKM--RISIGRKLDTSRGAIVQPGKDSDNEF 488
            + ++ING +I+PGA    ++L  +     K +  RI+I   L       + P        
Sbjct: 539  KQAVINGPDIYPGAAAVENELGQVVNLKFKSVDERIAIANML-------LSPSNWKLKRS 591

Query: 489  EGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 548
              K VYRHL  GD+VL+NRQPTLHKPSIM H  RVL GE+T+RMHYANC+TYNADFDGDE
Sbjct: 592  RNKKVYRHLTTGDIVLMNRQPTLHKPSIMGHRARVLTGERTIRMHYANCNTYNADFDGDE 651

Query: 549  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
            MN+HFPQ+E++RAEA  + + ++QY+  ++G PLR LIQDHI      T +D+  + +++
Sbjct: 652  MNLHFPQNEIARAEAMQLADTDHQYLVATSGKPLRGLIQDHISMGTWFTSRDSLFDEEDY 711

Query: 609  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
             QLLYS             +P     +S  + E++P  P I KP+P WTGKQ+I+ +L +
Sbjct: 712  HQLLYS-----------CLRPENSHTVS-EKIELMP--PTILKPKPRWTGKQIISTILKN 757

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
            IT              P+                          N+   +  GK      
Sbjct: 758  IT--------------PE--------------------------NRAGLNLIGK-----S 772

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNT 786
              PG+  E    + K        +++   +L+ G++DKAQ      GL+H+V E++G   
Sbjct: 773  STPGDRWEIGSEEGK--------VIVKDGELLCGILDKAQLGPSAGGLIHSVHEVFGHVV 824

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE 846
            AG L+  L RL T FLQM  FTCG+DDL + K  + ERK  L   + +G  V L+ + L+
Sbjct: 825  AGKLIGILGRLLTRFLQMRAFTCGMDDLRLTKKGDEERKKQLKRGDNLGHEVALQYVTLD 884

Query: 847  DG-AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHT---SSSVINELLSEGLLK 902
            +   E    +L+  +E  +R   D   A  D    S  N  T   SS +    L  GL K
Sbjct: 885  ESPVEDKETELQRRLEDVLR--DDEKQAGLD----SMFNSRTAGLSSDITAACLPSGLEK 938

Query: 903  PTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRA 962
            P   N +  MT SGAKGS VN   IS +LGQQ LEG+RVP M+SGKTLPSF P++    A
Sbjct: 939  PFPWNQMQAMTVSGAKGSVVNANLISCNLGQQVLEGRRVPVMISGKTLPSFKPFETKLVA 998

Query: 963  GGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSV 1022
            GG++  RFLTG++PQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E LK  YD SV
Sbjct: 999  GGYVSGRFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDNSV 1058

Query: 1023 RD-ADGSIVQFCYGEDGVDVHQTSFISKFDALAARE---RGRGRGRNKFCDKGSHTFVMG 1078
            RD  DG++VQF YGEDG+D+ +   +  F  LA        +  G ++F     H+ V  
Sbjct: 1059 RDTTDGTLVQFLYGEDGLDITKQKHLQDFSFLAQNYLSILSQVNGMDEF--NKVHSEVAA 1116

Query: 1079 R-NQEMIYK-KCSGQLDASNAYIME-------------LPDALKDNAEKFADKFLSNE-- 1121
            + N+  I K K +GQ+DA +  +                  ALK+  +K  DK L ++  
Sbjct: 1117 KWNKSAIKKVKRTGQVDAKDPVLAHYHPGANFGSTSESFATALKEYEKKNPDKLLKDKGQ 1176

Query: 1122 ----MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVT 1177
                ++K+DF  ++  K++ S+  PGE VG++A QS+GEPSTQMTLNTFHLAG    NVT
Sbjct: 1177 GIDGISKKDFEHIMNMKYMRSVVDPGEAVGIVAGQSIGEPSTQMTLNTFHLAGHSAKNVT 1236

Query: 1178 LGIPRLQEILTIASKDIKTPVITC 1201
            LGIPRL+EI+  AS  I TP ++ 
Sbjct: 1237 LGIPRLREIVMTASTQILTPTMSA 1260


>gi|452840368|gb|EME42306.1| hypothetical protein DOTSEDRAFT_175298 [Dothistroma septosporum
            NZE10]
          Length = 1715

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/1310 (35%), Positives = 667/1310 (50%), Gaps = 215/1310 (16%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG +   CPGH GHI+L VP Y+P     +  LL+  C +C   K  R  V + + K
Sbjct: 62   CGTCGLKNPQCPGHPGHIELPVPCYHPTFMEQVLRLLRAACIYCGKLKMKRVLVARYICK 121

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKS-----------SCSMVTPRGNYDNV 109
            L L+  G +     LD ++   S+  + +  S              + +    +   D++
Sbjct: 122  LRLVRCGLLKELTELD-EVEFRSAKGQQTAASGSDDDDDEEDADVKAITQQFEQFTQDSI 180

Query: 110  RNLKPQ----EWTSLQFAEAKLALL-QFLK--IETTKCGNCKAKNPRISKPTF------- 155
            R  K      E  +     A+ A+  QF+   ++  KCGNC   N    K  F       
Sbjct: 181  RRAKKAGTLVECKAEVIKNARTAITRQFMADIVKGKKCGNCGGINHAYRKDRFVKVFRKK 240

Query: 156  ------------------GWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDV 197
                                + M  +  A+      R  + G        E++ G + D+
Sbjct: 241  LSEKDHVAMVQQGKKAKDPVVEMQKLKRAENNRKRKRDMDEGVADMDISSEEEGGDNVDI 300

Query: 198  D-----APETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIE 252
            D      PE    N     +++ +     K +G  P  +          + PS VK  ++
Sbjct: 301  DESSEGEPEIAGGNMVDEASEERST--DTKSAGKAPEDY----------VNPSQVKAHLK 348

Query: 253  KLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVL 312
            +L++ + E+ + I  +  +   ++    +FFL  VLVPP ++R  +K   + +   Q   
Sbjct: 349  QLFDRDAEIMNLIYGIDLKKSAERLSADMFFLETVLVPPNRYRPEAKTSSNEISEAQENG 408

Query: 313  LSK----------VLQANIYLANAYVNQPDNAKV---IVARWMNLQQSVNVLFDG----- 354
            L K           +Q ++   +A       A+    +   W+ LQ++VNV+ D      
Sbjct: 409  LYKDIITTSESITAIQRDLTTKDAPAVSRYRARTYADLENAWLQLQENVNVVIDRNLSPL 468

Query: 355  KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFAL 414
            +  AG R+ A G+ Q LEKKEG+FR+ +MGKRVN+A R+VISPDP +  NEIG+PP FA+
Sbjct: 469  QGRAGARN-ADGVKQKLEKKEGMFRKYMMGKRVNFAARTVISPDPNIETNEIGVPPVFAV 527

Query: 415  RLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM--RISIGRK-LD 471
            +LTYPE V   N   ++ ++ NG  + PGA     +   +    NK    R+++    L 
Sbjct: 528  KLTYPEPVNQHNYEDMQQAVKNGPYVWPGAVAIESETGAVLNLANKTADERLALANSLLA 587

Query: 472  TSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLR 531
             S G+ V   +        K V+RHL +GD+V++NRQPTLHKPS+M H  RVL GEKTLR
Sbjct: 588  PSVGSNVHGARP-------KKVHRHLNNGDIVIMNRQPTLHKPSMMCHKARVLPGEKTLR 640

Query: 532  MHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIV 591
            MHYANC+TYNADFDGDEMN+HFPQ+E++RAEA  I + ++QY+  + G+PLR LIQDHI 
Sbjct: 641  MHYANCNTYNADFDGDEMNMHFPQNELARAEALLIADTDHQYLSGTAGNPLRGLIQDHIS 700

Query: 592  SAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWK 651
                LT +D F  R E+  LLYS+            +P  R   S    E +P  PA+ K
Sbjct: 701  MCVWLTNRDLFFERGEYMNLLYSA-----------LRPEDRHCASH-RLETVP--PAVIK 746

Query: 652  PEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSK 711
            P PLWTGKQVI+ VL ++       +                          N  GK S 
Sbjct: 747  PNPLWTGKQVISTVLKNLQPAGTAGL--------------------------NMTGK-ST 779

Query: 712  TNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD 771
            T      + GK++ VV  K GE                         L++G++DK Q   
Sbjct: 780  TAATMWGEHGKEEGVVIFKDGE-------------------------LMQGILDKKQIGP 814

Query: 772  Y--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLH 829
               GLV+ V E YG   AG LLS L RL T  L M  F+CGV+DL+  ++ E +R+  L 
Sbjct: 815  SAGGLVNAVYEAYGYRAAGRLLSILGRLLTKLLHMRAFSCGVEDLIFTREGEEDRRAALA 874

Query: 830  GSEEIGKRVHLEALELED-GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTS 888
            GS+ +G +V  + + LED   + D  +L+  +E  +R   D  +   D  M +   +  S
Sbjct: 875  GSDSVGLKVAAKYVSLEDQNPKSDDRELRKRLEDVLR--DDEKMQGLDSLMNNS-TRDLS 931

Query: 889  SSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGK 948
              V N  +  GL KP  KN +  MTTSGAKGSKVN   IS +LGQQ LEG+RVP MVSGK
Sbjct: 932  GDVSNRCMPAGLTKPFPKNQMQTMTTSGAKGSKVNVNLISCNLGQQVLEGRRVPVMVSGK 991

Query: 949  TLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1008
            TLP F P++ + RAGG+I+DRFLTG+RPQEY+FH MAGREGL+DTAVKTSRSGYLQRCLI
Sbjct: 992  TLPCFKPFESSVRAGGYIVDRFLTGIRPQEYFFHAMAGREGLIDTAVKTSRSGYLQRCLI 1051

Query: 1009 KNLECLKISYDYSVRDA-DGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKF 1067
            K +E L+  +D SVR   DGSIVQF YGEDG+D+ +  ++  F               KF
Sbjct: 1052 KGMEGLRAEHDSSVRHTEDGSIVQFLYGEDGLDIGKAKYLFDF---------------KF 1096

Query: 1068 CDKGS----HTFVMGRNQEMIYKKC-------------SGQLDASNAYIMELPDAL---- 1106
              +      HT+ M  +++++ ++              +G L AS   +   P  +    
Sbjct: 1097 TAENYLSLFHTYQMDESKQLLDEEVKDHAKAAEKRFRKTGDLGASEPALSLYPPGVHGGS 1156

Query: 1107 --------------KDNAEKFADKFLSNE--MAKQDFLKLVKHKFVLSLAQPGEPVGLLA 1150
                          KD      DK  + +  ++K++F  ++  +++ S+ +PGE VG++A
Sbjct: 1157 ISEKVLADAREWLDKDKERLIKDKKKNPDGVVSKKNFNNILDMRYLKSVVEPGEAVGVVA 1216

Query: 1151 SQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
             QSVGEPSTQMTLNTFHLAG    NVTLGIPRL+EI+  A+ +I TP +T
Sbjct: 1217 GQSVGEPSTQMTLNTFHLAGHAAKNVTLGIPRLREIVMTAAANISTPAMT 1266


>gi|70996010|ref|XP_752760.1| DNA-directed RNA polymerase I subunit (Rpa190) [Aspergillus fumigatus
            Af293]
 gi|66850395|gb|EAL90722.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Aspergillus
            fumigatus Af293]
          Length = 1680

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/1279 (36%), Positives = 660/1279 (51%), Gaps = 164/1279 (12%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q  + C GH GHI+L V VYN   F+ LY LL+  C +CH F+ +R ++   V K
Sbjct: 63   CTTCRQNSWSCTGHPGHIELPVRVYNVTFFDQLYRLLRAQCVYCHRFQMARVQINAYVCK 122

Query: 61   LELIIKGDIIAAKSLDL------DLPSESSNPEDSDVSNKSSCSMVTPRGNY-------- 106
            L L+  G +   ++++       +    + + +DS    +    +V  R  Y        
Sbjct: 123  LRLLQYGLVDEVEAIEAMGTGQGNKKKSAKDADDSGSEEEDDDDLVARRNAYVKKVIREA 182

Query: 107  ---DNVRNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISKPTFGWIHMN 161
                 ++ +       +   + +  + QF K  +   KC +C   +P   +  F  I   
Sbjct: 183  HAAGRLKGIMSGAKNPMAAEQRRTLVKQFFKDLVSIKKCSSCSGISPSYRRDRFSKIFRK 242

Query: 162  GMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRH- 220
             +P     A +  G      F        L  +   D     S       T +  +  H 
Sbjct: 243  PLPEKSRLAMVQAG------FQAPNSLILLQQAKKFDMKTKESMANGISDTANAVSESHG 296

Query: 221  -----QKGSGAVPSG-FKKQKDLFSGPLLPS-DVKDIIEKLWENEFELCSFISDMQQQGF 273
                  +G+  V     KK     +G  +PS +V   +  L+E E E+ S I + +    
Sbjct: 297  AEEEVARGNAVVAQAESKKSAAGDAGQYMPSPEVHAAMVLLFEKEKEILSLIYNSRPLPK 356

Query: 274  GK-KAGHSIFFLGVVLVPPIKFRLPS-KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQP 331
             + K    +FF+  +LVPP K+R  + +G   +ME  Q    +++L+ N  + N    + 
Sbjct: 357  KEAKVSPDMFFIKNILVPPNKYRPAAPQGPGEIMEAQQNTPFTQILK-NCDIINQISKER 415

Query: 332  DNA-----------KVIVARWMNLQQSVNVLFDGKN-----AAGQRDMASGICQLLEKKE 375
             NA           + ++   + LQ +VN L D +      AAGQ   A+GI Q+LEKKE
Sbjct: 416  QNAGADSVTRMRDYRDLLHAIVQLQDTVNGLIDKERGASGPAAGQ--AANGIKQILEKKE 473

Query: 376  GLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSII 435
            GLFR+ +MGKRVN+A RSVISPDP +  NEIG+P  FA +LTYPE VT  N  +++ ++I
Sbjct: 474  GLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQAVI 533

Query: 436  NGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG---KM 492
            NG + +PGAT   ++L  +    N K +      LD       Q    S+   +G   K 
Sbjct: 534  NGPDKYPGATAIENELGQV---TNLKFK-----SLDERTALANQLLAPSNWRMKGARNKK 585

Query: 493  VYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVH 552
            VYRHL  GDVVL+NRQPTLHKPSIM H  RVL  E+ +RMHYANC+TYNADFDGDEMN+H
Sbjct: 586  VYRHLTTGDVVLMNRQPTLHKPSIMGHKARVLANERVIRMHYANCNTYNADFDGDEMNMH 645

Query: 553  FPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLL 612
            FPQ+E++RAEA  + +A++QY+  ++G PLR LIQDHI      T +DTF + +++ +LL
Sbjct: 646  FPQNELARAEAMMLADADHQYLVATSGKPLRGLIQDHISMGTWFTCRDTFFDEEDYHELL 705

Query: 613  YSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRG 672
            YS             +P     ++   Q V P L    KP+ LWTGKQVIT +L +I   
Sbjct: 706  YS-----------CLRPENSHTVTERIQLVEPTL---LKPKRLWTGKQVITTILKNIM-- 749

Query: 673  RPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPG 732
             PP                                           ++G   +     PG
Sbjct: 750  -PP------------------------------------------GRAGLNLKSKSSTPG 766

Query: 733  EEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQFADY--GLVHTVQELYGSNTAGT 789
             ++  E N+        E  +I+K+ +++ G++DK Q      GL+  + E+YG   AG 
Sbjct: 767  -DRWGEGNE--------EGTVIFKDGEMLCGILDKKQIGPTAGGLIDAIHEVYGHTIAGR 817

Query: 790  LLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGA 849
            L+S L RL T +L M  FTCG+DDL + K+ +R RK  L  +  IG+ V L+ + L+   
Sbjct: 818  LISILGRLLTRYLNMRAFTCGIDDLRLTKEGDRLRKEKLSQAASIGREVALKYVTLDQTT 877

Query: 850  EIDP-IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNW 908
              D   +L+  +E  +R   D   +  D    ++  K  S+ +    L +GL KP   N 
Sbjct: 878  VPDQDAELRRRLEDVLR--DDDKQSGLDSVSNARTAK-LSTEITQACLPKGLAKPFPWNQ 934

Query: 909  ISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIID 968
            +  MT SGAKGS VN   IS +LGQQ LEG+RVP M+SGKTLPSF  +D  P AGG++  
Sbjct: 935  MQSMTISGAKGSSVNANLISCNLGQQVLEGRRVPVMISGKTLPSFRAFDTHPMAGGYVCG 994

Query: 969  RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD-ADG 1027
            RFLTG++PQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E L+  YD SVR+ +DG
Sbjct: 995  RFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRAEYDTSVRESSDG 1054

Query: 1028 SIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRN---KFCDKGSHTFVMGRNQEMI 1084
            SIVQF YGEDG+D+ +   +  FD L +      +  N    F +             M 
Sbjct: 1055 SIVQFLYGEDGLDITKQVHLKDFDFLTSNYVSIMQSVNLTSDFHNLEKDEVTAWHKDAMK 1114

Query: 1085 YKKCSGQLDASNAYIM-------------ELPDALKDNAEKFADKFLSNE-------MAK 1124
              + +G++DA +  +                  ALK   +   DK L ++       ++K
Sbjct: 1115 KVRKTGKVDAMDPVLSVYHPGGNLGSTSEAFSQALKKYEDTNPDKLLRDKKKNIDGLISK 1174

Query: 1125 QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
            + F  L+  K++ S+  PGE VG++ASQS+GEPSTQMTLNTFHLAG    NVTLGIPRL+
Sbjct: 1175 KAFNTLMNMKYLKSVVDPGEAVGIVASQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLR 1234

Query: 1185 EILTIASKDIKTPVITCPL 1203
            EI+  AS  I TP +T  L
Sbjct: 1235 EIVMTASAHIMTPTMTLIL 1253


>gi|242088681|ref|XP_002440173.1| hypothetical protein SORBIDRAFT_09g027223 [Sorghum bicolor]
 gi|241945458|gb|EES18603.1| hypothetical protein SORBIDRAFT_09g027223 [Sorghum bicolor]
          Length = 799

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/759 (48%), Positives = 487/759 (64%), Gaps = 40/759 (5%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           CK+CGQ    CPGHFGHI+L  P++NPLLF  L  LL   CF+CH F+ ++ +V++ V +
Sbjct: 66  CKSCGQNSVRCPGHFGHIELAKPLFNPLLFMSLRNLLHVTCFYCHKFRLNKEQVDRYVNE 125

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
           LEL++KGDI+ AK+L+  +     + ED +++  +S    +      +V++ K   WTS+
Sbjct: 126 LELLVKGDIVGAKNLEDSVKEAYLSEEDENITETTSGDKSS------SVKDNK--TWTSV 177

Query: 121 QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNL-- 178
           Q  E      + +K   TKC  C  K+P IS P FGW+  +    A +RAN I    L  
Sbjct: 178 QLKEVLSIFSKIMKKRQTKCAKCDMKSPTISSPIFGWLVKDTSASA-VRANAIADFKLKG 236

Query: 179 -GETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKG-SGAVPSGFKKQKD 236
            G+  + G    D G S  +D  ET S      G+ +   R         V S  KK   
Sbjct: 237 DGDAHNSG----DTGVSG-LDE-ETTSPGMVSKGSINEVRRLSDDAVKEMVASSGKKH-- 288

Query: 237 LFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIK 293
                LLP++V+ I++ LW NE   C  + D Q+       K+ G+ +FFL  +LV P +
Sbjct: 289 -----LLPTEVESILKDLWNNEARFCMLLCDFQKNTLSEPEKRRGYEMFFLNSLLVAPNR 343

Query: 294 FRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD 353
           FR  +     +MEHPQ+VLLSKV +AN+ L   + N   N   ++ RWM+LQ+SVNVL+D
Sbjct: 344 FRPSTNSSLGMMEHPQSVLLSKVQEANLALQ--HHNASSNHMDVIRRWMDLQRSVNVLYD 401

Query: 354 G-KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYF 412
             K        A GI QLLEKKEG+ RQK+MGKRVNYACRSVISPDPYLAVNEIGIPP F
Sbjct: 402 SSKGLVKSEKNAHGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPVF 461

Query: 413 ALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDT 472
           A RLTYPE+VTPWN  KL+++I NGA+IHPGATHY DK +T +L      R S+ + L  
Sbjct: 462 ATRLTYPEKVTPWNTKKLQEAIRNGADIHPGATHYRDKNNTYKLQAVPAKRHSVAKMLPA 521

Query: 473 SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 532
           SRG+I QPG+D + EFE K+VYRHLQDGD+VLVNRQPTLHKPS+MAH VRVL GE+TLRM
Sbjct: 522 SRGSICQPGRDPNCEFESKVVYRHLQDGDIVLVNRQPTLHKPSMMAHFVRVLPGERTLRM 581

Query: 533 HYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVS 592
           HYANCSTYNADFDGDEMNVHFPQDE+SRAEA NIV+AN QY+ P +GD +R LIQDHI+ 
Sbjct: 582 HYANCSTYNADFDGDEMNVHFPQDEISRAEAMNIVDANKQYIGPRSGDAVRGLIQDHIIG 641

Query: 593 AALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKP 652
           A LLTK+DTFL R+E+ QL++ S + SS  GS    PG++V        +  + PAIWKP
Sbjct: 642 AVLLTKRDTFLTREEYSQLVFGSCMPSSNRGS--RHPGKKVSAIEDYGTLELVRPAIWKP 699

Query: 653 EPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFN-ADKQSDRKKNDKGKLSK 711
           +PLWTGKQVIT +LNH+T+GRPPF VE+ GK+P+++ K     A ++ D     + +   
Sbjct: 700 KPLWTGKQVITTILNHLTKGRPPFTVEQKGKIPKEYLKEGDPFAQEEKDSPAQQQEEDPS 759

Query: 712 TNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             K  +D   +K++     P  +KE +++ S +KE  E+
Sbjct: 760 AQKEKEDSLARKED-----PSAQKEKQEDPSAQKETQED 793


>gi|452820032|gb|EME27080.1| DNA-directed RNA polymerase I subunit A1 [Galdieria sulphuraria]
          Length = 2200

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/1291 (35%), Positives = 668/1291 (51%), Gaps = 184/1291 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC      CPGHFGHI+L +PV +P+LF LL  +L+  C++CHHF+   R  +  + K
Sbjct: 570  CATCHLGYADCPGHFGHIELALPVVHPVLFPLLIKVLRAKCWYCHHFRLGTRTKKLFIAK 629

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
            L  +   +   A+ +D ++    S+ +D     K     ++  G   N   L     T+L
Sbjct: 630  LRFLFCNEWEKAEEVD-EIMGMLSSADD----QKKQHDRLSEEGEQQNEETLMND--TNL 682

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRA--NLIRGCNL 178
            +   A      F  +E+      KA+  ++ +  +         H+  +A  +    C L
Sbjct: 683  EVEVASGLSSSFSSMESRIESQIKAREEQLCEEAYAVWKSFMKKHSTRKAIQSYSSNCAL 742

Query: 179  -----GETFSGGEEE----KDLGASSDVDAPETHSFNGTFPGTQDT--------AARRHQ 221
                  E F    E     ++ G SS V   E          +Q++         +R+ +
Sbjct: 743  LRKRTTEEFLASNESLGKCQNCGHSSVVIRREESKVFRILKKSQESEQVDILVSQSRKEE 802

Query: 222  KGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDM----------QQQ 271
                   S +++   +    +   +++  + +L++ E E    + +M          QQQ
Sbjct: 803  TSHIERDSSYQETHSVNKKLISTIELEQQLSRLYQIEMECIQVLWEMDAINQTNDSEQQQ 862

Query: 272  GFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDS----VMEHPQTVLLSKVLQANIYLANAY 327
                +   S+FF+  + V P +FR P+   +     VMEHPQ V L+++LQ N  L    
Sbjct: 863  NNNNETVDSVFFIRCLAVSPCRFRPPATFSEGEQLLVMEHPQNVFLTRILQINQQLIQLK 922

Query: 328  VNQPDNAKVI-VARWMNLQQSVNVLFD----GKNAAGQRDMASGICQLLEKKEGLFRQKL 382
              Q  ++ +  + + + LQ +VN L+D    G  A       +GI Q LE KEGLFR  +
Sbjct: 923  EQQESSSILSPIQQMIALQHAVNQLYDCSRGGVGANAGTTTGTGIRQQLEHKEGLFRMYM 982

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
            MGKRVN++ RSVISPDP+L   E+G+P  FA++LT+PE +  +N+  LR +II G+  +P
Sbjct: 983  MGKRVNHSARSVISPDPFLETCEVGVPESFAMKLTFPEPINFYNIEYLRKAIIRGSTEYP 1042

Query: 443  GATHYLDKLST----MRLPPN--KKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKM---- 492
            GAT   D++      +R P +  K   +S+      +   I +   D+       M    
Sbjct: 1043 GATGIEDRMGNVIDFLRAPEHQRKAQAMSLKSSHPMNLDMIDRSAADASASIHKAMNHNA 1102

Query: 493  ---VYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
               VYRH+++GD+VL NRQP+LH+ SI+AH VR+L GE+T+RMHYANC +YNADFDGDEM
Sbjct: 1103 IIRVYRHMKNGDLVLFNRQPSLHRVSILAHKVRILPGERTIRMHYANCQSYNADFDGDEM 1162

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+HFPQD V+++EA+N++  +  Y+ P+NG+PLR LIQDHI+   LLT  DTFL  DEF 
Sbjct: 1163 NLHFPQDYVAQSEAFNLLLTDRHYISPTNGNPLRGLIQDHILGGVLLTSIDTFLRLDEFQ 1222

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
            QLLY +               +R + S   + V    PAI  P PLWTGKQVI+ +L  +
Sbjct: 1223 QLLYGAI--------------ERTMESVDNKTVAIPTPAIVFPVPLWTGKQVISTILLFL 1268

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
               RPPF                                L   NK+  +  G   +V+  
Sbjct: 1269 IGSRPPFY-------------------------------LQSNNKLKWEMVGDDDQVI-- 1295

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTA 787
                                    +++  L+RGV+DK+QF  + +GLVH+  E+YG+  A
Sbjct: 1296 ------------------------VHRGHLLRGVLDKSQFGASAHGLVHSFYEIYGAIDA 1331

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKN----------HLHGSEEIGKR 837
            G LLSAL RLFT+FL++HG T GVDDLL+    E +RK            L   + I K 
Sbjct: 1332 GRLLSALGRLFTLFLRIHGHTTGVDDLLLTTIAEMKRKEWQQYCEMSFVFLATEQWIEKL 1391

Query: 838  VHL-----EALELEDGAEIDPIKLK-SEIEKA--------MRGGGDAAV-------AYFD 876
            +       E+L +  G      KLK SE+  +        + G  ++ V       +  D
Sbjct: 1392 MERGLLSEESLSILLGTGDWKSKLKGSELNYSQLLLLYGRILGNMESDVTSRAEMESLLD 1451

Query: 877  MKMTSQLNKHTSSSVINELLS--EGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
              +  Q++K TS  VI   +S  EG++K    N   LMT+SGAKGS VN  QIS  LGQ 
Sbjct: 1452 EIVKKQVSKVTSE-VIKSCISDREGVVKKFPHNGFLLMTSSGAKGSLVNTAQISCQLGQT 1510

Query: 935  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
            ELEGKRVPR +SG TLP +  +D  P++GGFI  RFLTG+RP EY++HCMAGR+GLVDTA
Sbjct: 1511 ELEGKRVPRSLSGATLPCYPSFDPCPQSGGFIASRFLTGIRPDEYFYHCMAGRDGLVDTA 1570

Query: 995  VKTSRSGYLQRCLIKNLECLKISYDYSVRDADG-SIVQFCYGEDGVDVHQTSFISKFDAL 1053
            VKT+RSGYLQRCL+K LE L + YDY+VR ++  +++QF YGEDG+D  +T+++SK    
Sbjct: 1571 VKTARSGYLQRCLVKGLEDLYVGYDYTVRQSENQAVIQFLYGEDGLDPCRTAWLSKPSCF 1630

Query: 1054 AARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKF 1113
                               H + +   Q  +Y +         A   +   +L    ++ 
Sbjct: 1631 QW-----------------HAWNIEALQSTLYSQHRSYQTVDYALSPKFQHSLHQFMKEC 1673

Query: 1114 ADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGE 1173
             +    N   K+ F   ++ ++  +   PGE VG++A+Q VGEPSTQMTLNTFH AG G 
Sbjct: 1674 GESLPQNR-TKEQFQSFMESRYRNAFISPGEAVGVIAAQGVGEPSTQMTLNTFHFAGMGA 1732

Query: 1174 MNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
             +VTLGIPRL+E+L  ASK  KTP++T P L
Sbjct: 1733 AHVTLGIPRLRELLMTASKQPKTPLMTIPFL 1763


>gi|325179800|emb|CCA14203.1| DNAdirected RNA polymerase I subunit RPA1 putative [Albugo laibachii
            Nc14]
          Length = 1800

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1099 (39%), Positives = 590/1099 (53%), Gaps = 150/1099 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q Q  CPGH GHI+L VPVYNP+LF  L T+LKR CF CH  +    +      K
Sbjct: 66   CPTCHQTQKECPGHMGHIELPVPVYNPVLFPKLLTILKRKCFNCHKLRVDCSKSRVYRVK 125

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSD----VSNKSSCSMVTPRGNYDNVRNLKPQE 116
            + L   G +    +L  +L  +    ED      +  + +      R    N +      
Sbjct: 126  IMLYDCGLVEEVATLT-ELLEQRDGIEDEAPNQIIKRQQAILDEYERFAATNRKLFSRTR 184

Query: 117  WTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGC 176
              ++Q    +L + Q LK    KC NC A  P I + +   I +  +     R N  +  
Sbjct: 185  SRTVQVERERL-VAQVLKTTKQKCENCGAITPSIRQDSNAKIFIKSLSARSRRNNRQKNL 243

Query: 177  NLGETFSGGEEEKDLGASSDV---DAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKK 233
             +G      +  + L + S     D  +  S + T        AR  Q+ S      F  
Sbjct: 244  KIGAAVD--QVTQTLTSKSKEQYEDESDLSSEDSTLEMDLSEVAR--QRNSIVANHTF-- 297

Query: 234  QKDLFSGPLLPSDVKDIIEKLWENE---FELCSFISDMQQQGFGKKAGHSIFFLGVVLVP 290
                    L P +V+  ++ LW++E    ELC   +     G  +  G   FFL V+ V 
Sbjct: 298  --------LPPLEVQSQLQLLWKHETGLMELCFGENTAAISGKPRMDGWQSFFLHVIPVT 349

Query: 291  PIKFRLPSKGGDSVMEHPQTVLLSKVLQANIY-------------LANAYVNQPDNAKVI 337
            P +FR P   GD   EH Q   LSK++Q +               LA++  +   +  + 
Sbjct: 350  PSRFRPPVFLGDDQFEHAQNTYLSKIIQLSQAIVQKTNKVGKESGLADSVEDSSGDVDLF 409

Query: 338  --VARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
              ++ W  LQ +VN L D   A   +D   GI QL+EKKEGLFR+ +MGKRVNYA RSVI
Sbjct: 410  QKLSLWTELQVNVNSLVDSTKARPGQDTPQGIRQLIEKKEGLFRKNMMGKRVNYAARSVI 469

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM- 454
            SPDPY++ ++IG+P  FA  LTYP+ VTPWN+ +LR+ +ING E+HPGA    +++  + 
Sbjct: 470  SPDPYISTSQIGVPLRFAKTLTYPQPVTPWNIEQLRELVINGPEVHPGANFVENEMGRLI 529

Query: 455  ---RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
               +  P+++  IS   K   +R A  Q GK  D     K V+RHLQ GDVVL+NRQPTL
Sbjct: 530  DLSKRSPHQRFAIS---KTLLTRSASAQ-GKSRDRV---KRVWRHLQTGDVVLMNRQPTL 582

Query: 512  HKPSIMAHVVRVLKGE--KTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNA 569
            HKPS+MAHV RVL     +T+RMHYANC+TYNADFDGDEMN+HFPQ+E+ R+EAYNI   
Sbjct: 583  HKPSMMAHVARVLTNPEMQTIRMHYANCNTYNADFDGDEMNLHFPQNELGRSEAYNIAAN 642

Query: 570  NNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKP 629
            ++QY+ P++G PLR LIQDH+V    LT++DTFL +D + QLLY++  S  GL      P
Sbjct: 643  DHQYLVPTDGSPLRGLIQDHVVCGIKLTQRDTFLTKDMYNQLLYNAWASIEGLNL----P 698

Query: 630  GQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFF 689
            G  ++  +   E++P  PAI KP+ LWTGKQVIT+VL  +T+G PP              
Sbjct: 699  GM-IIDPKQNIEIVP--PAILKPKQLWTGKQVITSVLRMLTKGLPP-------------- 741

Query: 690  KTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSE 749
                                     +H     K K  + G   +E               
Sbjct: 742  -------------------------LHMTSKAKVKGELYGIANQE--------------- 761

Query: 750  EKLLIYKN-DLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHG 806
              ++++++ +L++GV+DK+QF    +GLVH   E+YG+  A  LL+AL RLFT +LQ  G
Sbjct: 762  -HIVVFRDGELLQGVLDKSQFGASMHGLVHATYEIYGARIAADLLTALGRLFTCYLQFVG 820

Query: 807  FTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRG 866
             TC V+DL +    E+ R   +  SE  G+    E   L      D +  K   EK  RG
Sbjct: 821  HTCAVEDLTLNVQAEKRRSRLIKKSEIAGEEACAEFAGLH-----DLLSAKRTAEKDDRG 875

Query: 867  G-------------------------GDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLL 901
            G                          D      D  M   ++K  +S +I   L  G  
Sbjct: 876  GKKRRMTNLERAVLRSRMATLFHGRDADQNRKALDAHMMGCVHKF-NSEIIKTCLPVGQT 934

Query: 902  KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 961
            KP   N  S+M  +GAKGS VN  QIS  LGQQ LEG+RVP +VSG++LPSF P+D +PR
Sbjct: 935  KPFPSNNFSMMVLTGAKGSMVNHSQISCGLGQQALEGRRVPILVSGRSLPSFEPFDPSPR 994

Query: 962  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1021
            AGG+I DRFLTGLRPQEYY HCMAGREGLVDTAVKTSRSGYLQRCL+K+LE L+++YD++
Sbjct: 995  AGGYITDRFLTGLRPQEYYHHCMAGREGLVDTAVKTSRSGYLQRCLVKHLEDLQVAYDHT 1054

Query: 1022 VRDADGSIVQFCYGEDGVD 1040
            VRD++G+++QF YGEDGVD
Sbjct: 1055 VRDSEGNVIQFLYGEDGVD 1073



 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/82 (59%), Positives = 63/82 (76%)

Query: 1122 MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIP 1181
            +A + F  LV   ++ SL  PGE VG+LA+QS+GEPSTQMTLNTFHLAG G  NVTLGIP
Sbjct: 1292 IAPEAFQLLVWASYLQSLCAPGENVGVLAAQSIGEPSTQMTLNTFHLAGHGAANVTLGIP 1351

Query: 1182 RLQEILTIASKDIKTPVITCPL 1203
            RL+EI+  AS+ + TP++T P+
Sbjct: 1352 RLREIIMTASEKMSTPMMTIPV 1373


>gi|119495150|ref|XP_001264366.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Neosartorya
            fischeri NRRL 181]
 gi|119412528|gb|EAW22469.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Neosartorya
            fischeri NRRL 181]
          Length = 1681

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/1273 (36%), Positives = 657/1273 (51%), Gaps = 152/1273 (11%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q  + C GH GHI+L V VYN   F+ LY LL+  C +CH F+ SR ++   V K
Sbjct: 63   CTTCRQNSWSCTGHPGHIELPVRVYNVTFFDQLYRLLRAQCVYCHRFQMSRVQINAYVCK 122

Query: 61   LELIIKGDIIAAKSLDL------DLPSESSNPEDSDVSNKSSCSMVTPRGNY-------- 106
            L L+  G +   ++++       +    + + +DS    +    +V  R  Y        
Sbjct: 123  LRLLQYGLVDEVEAIEAMGTGQGNKKKSAKDADDSGSEEEDDDDLVARRNAYVKKVIREA 182

Query: 107  ---DNVRNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISKPTFGWIHMN 161
                 ++ +       +   + +  + QF K  +   KC +C   +P   +  F  I   
Sbjct: 183  HAAGRLKGIMSGAKNPMAAEQRRTLVKQFFKDLVGIKKCSSCSGISPSYRRDRFSKIFRK 242

Query: 162  GMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQ 221
             +P     A +  G     +    ++ K     +        S   +       A     
Sbjct: 243  PLPEKSRLAMVQAGFQAPNSLILLQQAKKFDMKTKESMANGISDTASAFSESHGAEEEVA 302

Query: 222  KGSGAVPSG-FKKQKDLFSGPLLPS-DVKDIIEKLWENEFELCSFISDMQQQGFGK-KAG 278
            +G+  V     KK     +G  +PS +V   +  L+E E E+ S I + +     + K  
Sbjct: 303  RGNAVVAQAESKKSAAGDAGQYMPSPEVHAAMVLLFEKEKEILSLIYNSRPLPKKEAKVS 362

Query: 279  HSIFFLGVVLVPPIKFRLPS-KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNA--- 334
              +FF+  +LVPP K+R  + +G   +ME  Q    + +L+ N  + N    +  NA   
Sbjct: 363  PDMFFIKNILVPPNKYRPAAPQGPGEIMEAQQNTPFTHILK-NCDIINQISKERQNAGAD 421

Query: 335  --------KVIVARWMNLQQSVNVLFDGKN-----AAGQRDMASGICQLLEKKEGLFRQK 381
                    + ++   + LQ +VN L D +      AAGQ   A+GI Q+LEKKEGLFR+ 
Sbjct: 422  SVTRMRDYRDLLHAIVQLQDTVNGLIDKERGASGPAAGQ--AANGIKQILEKKEGLFRKN 479

Query: 382  LMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIH 441
            +MGKRVN+A RSVISPDP +  NEIG+P  FA +LTYPE VT  N  +++ ++ING + +
Sbjct: 480  MMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQAVINGPDKY 539

Query: 442  PGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG---KMVYRHLQ 498
            PGAT   ++L  +    N K +      LD       Q    S+   +G   K VYRHL 
Sbjct: 540  PGATAIENELGQV---TNLKFK-----SLDERTALANQLLAPSNWRMKGARNKKVYRHLT 591

Query: 499  DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
             GDVVL+NRQPTLHKPSIM H  RVL  E+ +RMHYANC+TYNADFDGDEMN+HFPQ+E+
Sbjct: 592  TGDVVLMNRQPTLHKPSIMGHKARVLANERVIRMHYANCNTYNADFDGDEMNMHFPQNEL 651

Query: 559  SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
            +RAEA  + +A++QY+  ++G PLR LIQDHI      T +D F + +++ +LLYS    
Sbjct: 652  ARAEAMMLADADHQYLVATSGKPLRGLIQDHISMGTWFTCRDAFFDEEDYHELLYS---- 707

Query: 619  SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVV 678
                     +P     I+   Q V P L    KP+ LWTGKQVIT +L +I    PP   
Sbjct: 708  -------CLRPENSHTITERIQLVEPTL---LKPKRLWTGKQVITTILRNIM---PP--- 751

Query: 679  ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 738
                                                    ++G   +     PG ++  E
Sbjct: 752  ---------------------------------------GRAGLNLKSKSSTPG-DRWGE 771

Query: 739  KNKSKEKELSEEKLLIYKN-DLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALS 795
             N+        E  +I+K+ +++ G++DK Q      GL+  + E+YG   AG L+S L 
Sbjct: 772  GNE--------EGTVIFKDGEMLCGILDKKQIGPTAGGLIDAIHEVYGHTIAGRLISILG 823

Query: 796  RLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP-I 854
            RL T +L M  FTCG+DDL + K+ +R RK  L  +  IG+ V L+ + L+     D   
Sbjct: 824  RLLTRYLNMRAFTCGIDDLRLTKEGDRLRKEKLSQAASIGREVALKYVTLDQTTVPDQDA 883

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
            +L+  +E  +R   D   +  D    ++  K  S+ +    L +GL KP   N +  MT 
Sbjct: 884  ELRRRLEDVLR--DDDKQSGLDSVSNARTAK-LSTEITQACLPKGLAKPFPWNQMQSMTI 940

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS VN   IS +LGQQ LEG+RVP M+SGKTLPSF  +D  P AGG++  RFLTG+
Sbjct: 941  SGAKGSSVNANLISCNLGQQVLEGRRVPVMISGKTLPSFRAFDTHPMAGGYVCGRFLTGI 1000

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD-ADGSIVQFC 1033
            +PQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E L+  YD SVR+ +DGSIVQF 
Sbjct: 1001 KPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRAEYDTSVRESSDGSIVQFL 1060

Query: 1034 YGEDGVDVHQTSFISKFDALAARERGRGRG---RNKFCDKGSHTFVMGRNQEMIYKKCSG 1090
            YGEDG+D+ +   +  FD L +      +     N F +             M   + +G
Sbjct: 1061 YGEDGLDITKQVHLKDFDFLTSNYVSIMQSVNLTNDFHNLEKDEVTAWHKDAMKKVRKTG 1120

Query: 1091 QLDASNAYIM-------------ELPDALKDNAEKFADKFLSNE-------MAKQDFLKL 1130
            ++DA +  +                  ALK   +   DK L ++       ++K+ F  L
Sbjct: 1121 KVDAMDPVLSVYHPGGNLGSTSEAFSQALKKYEDANPDKLLRDKKKNIDGLISKKAFNTL 1180

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            +  K++ S+  PGE VG++ASQS+GEPSTQMTLNTFHLAG    NVTLGIPRL+EI+  A
Sbjct: 1181 MNMKYLKSVVDPGEAVGIVASQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTA 1240

Query: 1191 SKDIKTPVITCPL 1203
            S  I TP +T  L
Sbjct: 1241 SAHIMTPTMTLIL 1253


>gi|302696833|ref|XP_003038095.1| hypothetical protein SCHCODRAFT_12868 [Schizophyllum commune H4-8]
 gi|300111792|gb|EFJ03193.1| hypothetical protein SCHCODRAFT_12868 [Schizophyllum commune H4-8]
          Length = 1717

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1034 (41%), Positives = 579/1034 (55%), Gaps = 159/1034 (15%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKK---------AGHSIFFLGVVLVPPI 292
            + P + +  + +L+  E  +C+ I       +G+          A   +FFL V+ V P 
Sbjct: 329  MAPEECRAHLRRLFRKEPVMCALI-------YGRHGACAPSTPIASADMFFLEVISVAPT 381

Query: 293  KFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAK---------------VI 337
            +FR P+K  D++ EHPQ  LL+KVL     L +  VN    ++               ++
Sbjct: 382  RFRPPAKMNDTLFEHPQNELLAKVLNTCYRLRDLNVNLRQASEKGAEFNDTERRRVMGML 441

Query: 338  VARWMNLQQSVNVLFDG-KNAAGQRD---MASGICQLLEKKEGLFRQKLMGKRVNYACRS 393
            +   + LQ  VN   D  KN A  R       G+ Q LE+KEGLFR+ +MGKRVNYA RS
Sbjct: 442  LEALVQLQVDVNSFMDSSKNPAPMRQGKLPPPGVKQGLERKEGLFRKHMMGKRVNYAARS 501

Query: 394  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGAT-------- 445
            VISPD  +  NEIGIPP FA +LT+PE VT  NV  LR  +ING   HPGA         
Sbjct: 502  VISPDANIEPNEIGIPPVFARKLTFPEPVTHHNVNALRQLVINGPRNHPGAAIIEHEDGH 561

Query: 446  -HYLDKLSTMRLPPNKKMRISIGRKLDTSRGAI-VQPGKDSDNEFEGKMVYRHLQDGDVV 503
               LDKL+        + R ++  +L T +G    + G  +      K VYRHLQDGD++
Sbjct: 562  KQSLDKLTV-------EQRTALANQLMTPQGDTHNRHGLSTRTPAINKKVYRHLQDGDML 614

Query: 504  LVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEA 563
            ++NRQPTLHKPS+M H  +VL+GEKT+RMHYANC++YNADFDGDEMN+HFPQ+E++RAEA
Sbjct: 615  ILNRQPTLHKPSMMTHRAKVLQGEKTIRMHYANCNSYNADFDGDEMNIHFPQNEIARAEA 674

Query: 564  YNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLG 623
              I N +NQY+ P++G+PLR LIQDH+V+   +T +D F  R+E+ QLLY         G
Sbjct: 675  TFIANTDNQYLVPTSGNPLRGLIQDHVVAGVWMTCQDAFFEREEYFQLLY---------G 725

Query: 624  SFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGK 683
            +   +  Q V  SR    ++ L P IWKP PLWTGKQ+I+ VL ++T             
Sbjct: 726  ALRPE-DQTVATSR----IVTLPPTIWKPRPLWTGKQIISTVLKNVT------------- 767

Query: 684  LPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSK 743
             P +F     NA      K    GKL                              N SK
Sbjct: 768  -PTEFDGITLNA------KTKVPGKLW----------------------------GNASK 792

Query: 744  EKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVF 801
                 E+K++    +L+ GV+DKA F  ++YG+VH+V ELYG++ AG LL  LSRLFT F
Sbjct: 793  -----EDKVIFMDGELLCGVLDKAAFGASEYGIVHSVYELYGADVAGRLLGILSRLFTKF 847

Query: 802  LQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGA--EIDPIKLKSE 859
            LQ   FTC +DDL++  + +  R++ L  ++E+G    +E      G   E  P  L+S 
Sbjct: 848  LQHRAFTCRMDDLILTPNGDATRRDILAKNKELGTEAAIENFPSLKGVAKEEVPTVLRSL 907

Query: 860  IEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKG 919
            + + +R   D  +A  D+ + ++L+  T S + +  L +GL +    N +  MT SGAKG
Sbjct: 908  LGEVLR--DDNKMAGLDVTVKTRLSSLT-SKISDACLPDGLYRKFPHNHMQAMTQSGAKG 964

Query: 920  SKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEY 979
            S VN +QIS  LGQQELEG+RVP MVSGKTLPSF  ++    AGG++  RFLTG++PQE+
Sbjct: 965  SAVNVRQISCGLGQQELEGRRVPVMVSGKTLPSFKAFETKAIAGGYVASRFLTGIKPQEF 1024

Query: 980  YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            YFHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE +++ YD +VR +D S+ QF YG DG+
Sbjct: 1025 YFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIRVHYDNTVRGSDSSVYQFNYGGDGL 1084

Query: 1040 DVHQTSFISKFDALAARERG-RGRGRNKFCDKGSHTFVMGRNQEMIYKKC---------- 1088
            DV +   + +FD +A  E     R R       + + +     + + KK           
Sbjct: 1085 DVTKQKHLYQFDFIAQNEVSFVNRLRPSEVSTVTDSKLAASYMKKVLKKSLVREGNTPPP 1144

Query: 1089 SGQLDAS----------NAYIMELPDALKDNAEKFADKFL-----------SNEMAKQDF 1127
              Q D             A   +   A+ + A+K   K L              + K + 
Sbjct: 1145 RNQFDPVLSVYNPAKYLGATSEQFATAVGEYAKKNPSKLLLLKGEEDPIKRKKALVKVNN 1204

Query: 1128 LK-LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
             K L+  K++ SL +PGE VGLLASQ VGEPSTQMTLNTFH AG G  NVTLGIPRL+EI
Sbjct: 1205 FKTLMNIKYMRSLVEPGEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREI 1264

Query: 1187 LTIASKDIKTPVIT 1200
            +  AS+  KTP +T
Sbjct: 1265 VMTASQKPKTPSMT 1278



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 49/76 (64%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    F CPGHFGHI+L  PV++PL  + +  LL+  C FCH FK SR  + K + K
Sbjct: 63  CATCRLSYFTCPGHFGHIELPAPVFHPLFMSNMLNLLRGTCLFCHQFKMSRTVLWKYMAK 122

Query: 61  LELIIKGDIIAAKSLD 76
           L+L+ +G + AA+ +D
Sbjct: 123 LKLLERGLLDAAQGVD 138


>gi|115492103|ref|XP_001210679.1| hypothetical protein ATEG_00593 [Aspergillus terreus NIH2624]
 gi|114197539|gb|EAU39239.1| hypothetical protein ATEG_00593 [Aspergillus terreus NIH2624]
          Length = 1691

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/1281 (36%), Positives = 671/1281 (52%), Gaps = 175/1281 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC    + C GH GHI+L V VYN   F+ +Y LL+  C +CH F+ SR ++     K
Sbjct: 84   CTTCRLNAWSCTGHSGHIELPVHVYNLTHFDQMYRLLRAQCVYCHRFQMSRTQINAYECK 143

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCS---------MVTPRGNYDNVRN 111
            L L+  G  +  + ++LD      + + S      S S         ++  R  +     
Sbjct: 144  LRLLQYG--LVDELVELDQIGSGKDTKKSRKGADGSGSEDEDMDDEDIIARRNVFVKKSI 201

Query: 112  LKPQEWTSLQ----------FAEAKLALL-QFLK--IETTKCGNCKAKNPRISKPTFGWI 158
             + Q    LQ           AE + A++ +F K  +   KC NC   +P   +  F  I
Sbjct: 202  REAQAAGKLQGVLSGAKNPLAAEQRRAVIGEFFKAIVAIKKCANCSGISPGYRRDRFSKI 261

Query: 159  HMNGMPHADIRANLIRGCNLGETFSGGEE-----EKDLGASSDVDAPETHSFNGTFPGTQ 213
                +P     A +  G     +    ++      KD GA+++  A  TH       G +
Sbjct: 262  FRKPLPEKSRLAMVQAGFQAPNSLILLQQAKRLNSKDKGAAANDTA--TH-------GAE 312

Query: 214  DTAARRHQKGSGAVPSGFKKQKDLFSGPLLPS-DVKDIIEKLWENEFELCSFISDMQQQG 272
            +  AR    G+  V     K++    G  +PS +V   I  L+E E  + + + +   + 
Sbjct: 313  EEVAR----GNAVVTQAENKKQVAEGGQYMPSPEVHAAITLLFEKESNILTLVYN--SRP 366

Query: 273  FGKKAGH---SIFFLGVVLVPPIKFRLPS-KGGDSVMEHPQTVLLSKVLQANIYLANAYV 328
              KK       +FF+  +LVPP K+R  + +G   +ME  Q   L+++L+ N  + N   
Sbjct: 367  LPKKESRVSADMFFIKSILVPPNKYRPAAIQGAGEIMEAQQNTPLTQILK-NCDIINQIS 425

Query: 329  NQPDNA-----------KVIVARWMNLQQSVNVLFD----GKNAAGQRDMASGICQLLEK 373
             +  N            + ++   + LQ +VN L D    G + A     A+GI Q+LEK
Sbjct: 426  KERQNGGSDSITRVRDYRDLLHAIVQLQDTVNGLIDRDRSGLSGAAVAGAANGIKQILEK 485

Query: 374  KEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDS 433
            KEGLFR+ +MGKRVN+A RSVISPDP +  NEIG+P  FA +LTYPE VT  N  +++ +
Sbjct: 486  KEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQA 545

Query: 434  IINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG--- 490
            +ING + +PGA    ++L  +    N K +      LD       Q    S+   +G   
Sbjct: 546  VINGPDKYPGAAAIENELGQV---TNLKFK-----SLDERTALANQLLAPSNWRMKGSRN 597

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
            K VYRHL  GDVVL+NRQPTLHKPSIM H  RVL  E+ +RMHYANC+TYNADFDGDEMN
Sbjct: 598  KKVYRHLTTGDVVLMNRQPTLHKPSIMGHKARVLSNERVIRMHYANCNTYNADFDGDEMN 657

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +HFPQ+E++RAEA  + +A++QY+  ++G PLR LIQDHI      T +D+F + +++ +
Sbjct: 658  MHFPQNELARAEAMMLADADHQYLVATSGKPLRGLIQDHISMGTWFTCRDSFFDEEDYHE 717

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            LLYS             +P     IS   Q V P    + KP+ LWTGKQ+IT +L    
Sbjct: 718  LLYS-----------CLRPENAHTISDRIQLVGP---TVIKPKRLWTGKQIITTILK--- 760

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                                                      N M  +++G   +     
Sbjct: 761  ------------------------------------------NIMPSERAGLNLKSKSST 778

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQFADY--GLVHTVQELYGSNTA 787
            PG+         +  + +EE  +I+K+ +++ G++DK Q      GL+ ++ E+YG   A
Sbjct: 779  PGD---------RWGKGNEEGDVIFKDGEMLCGILDKKQIGPTAGGLIDSIHEIYGHTIA 829

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED 847
            G L+  L RL T FL M  FTCG+DDL + K+ +R RK  L  + +IG+ V L+ + L+ 
Sbjct: 830  GKLIGILGRLLTRFLNMRAFTCGIDDLRLTKEGDRVRKEKLSQAPKIGREVALKYVTLDQ 889

Query: 848  GAEID-PIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
                D   +L+  +E+ +R   D   +  D    SQ  K  S+ +    L  GL+KP   
Sbjct: 890  TTVPDLDAELRRRMEEVLRD--DEKQSGLDSVTNSQTAK-LSTEITKACLPGGLVKPFPW 946

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
            N +  MT SGAKGS VN   IS +LGQQ LEG+RVP M+SGKTLPSF  +D  P AGG++
Sbjct: 947  NQMQSMTISGAKGSSVNANLISCNLGQQVLEGRRVPVMISGKTLPSFRAFDTNPMAGGYV 1006

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDA- 1025
              RFLTG++PQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E L+  YD SVR+A 
Sbjct: 1007 SGRFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRAEYDTSVREAS 1066

Query: 1026 DGSIVQFCYGEDGVDVHQTSFISKFDALAARER---GRGRGRNKFCDKGSHTFVMGRNQE 1082
            DGSI+QF YGEDG+D+ +   + +FD LA+  +    +   R+ + +             
Sbjct: 1067 DGSIIQFLYGEDGLDITKQVQLKRFDFLASNHKSIMSQVNLRSDYHNLEKEEVANWHKDA 1126

Query: 1083 MIYKKCSGQLDASNAYIME-------------LPDALKDNAEKFADKFLSNE-------M 1122
            M   + SG++DA +  +                  ALK   ++  D +L ++       +
Sbjct: 1127 MKKVRKSGKVDAMDPVLAHYHPGGNLGSVSEAFSQALKKYEDENKDGYLKDKKKGVDGFL 1186

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
            +K+ F  L+  K++ S+  PGE VG++ASQS+GEPSTQMTLNTFHLAG    NVTLGIPR
Sbjct: 1187 SKKAFDTLMNMKYLKSVVDPGEAVGIVASQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPR 1246

Query: 1183 LQEILTIASKDIKTPVITCPL 1203
            L+EI+  AS +I TP +T  L
Sbjct: 1247 LREIVMTASANIMTPTMTLVL 1267


>gi|405966808|gb|EKC32045.1| DNA-directed RNA polymerase I subunit RPA1 [Crassostrea gigas]
          Length = 1685

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1064 (40%), Positives = 584/1064 (54%), Gaps = 183/1064 (17%)

Query: 242  LLPSDVKDIIEKLWENEFE----LCSFISDMQQQGFGKKAGHSI--FFLGVVLVPPIKFR 295
            L  +DV+D + ++W+ + +    L  F+S       G  A +    FF+ VV VPP +FR
Sbjct: 287  LTSADVRDHLRQVWQKDQQVLKCLFHFLS-------GSSADYPTDSFFIDVVPVPPSRFR 339

Query: 296  LPSKGGDSVMEHPQTVLLSKVLQAN------IYLANAYVN-------QPDNAKVIVARWM 342
              S   D   E+PQT  L  VL+        + L +   N       +P     I  + +
Sbjct: 340  PVSSLRDKKFENPQTQTLCNVLKGAALIRKILSLKSTQENGKEITEIEPTAITEIPGKTL 399

Query: 343  N---------LQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRS 393
            N         LQ  +N + DG +     D  +G+ Q+LEKKEGLFR+ +MGKRVN+A RS
Sbjct: 400  NEKLQNALVKLQVVMNCIVDGDSDKLAVDKITGVKQILEKKEGLFRKNMMGKRVNFAARS 459

Query: 394  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLST 453
            VISPDP ++  EIGIP  FA +LT+P+ VTPWNV +LR ++ING + +PGA       S 
Sbjct: 460  VISPDPCISTCEIGIPEVFAKKLTFPQPVTPWNVHELRQAVINGPDTYPGA-------SL 512

Query: 454  MRLPPNKKMRISIGRKLDTSRGAIVQ----PGKDSDNEFEGKMVYRHLQDGDVVLVNRQP 509
            + +P   K  + + +K    R AI +    P  D   +   K+V+RHL++GDV+L+NRQP
Sbjct: 513  IDMPDGSK--VILNKKEKVQREAIAKQLLTPSPDPHQQNTCKVVHRHLKNGDVLLINRQP 570

Query: 510  TLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNA 569
            TLH+PSI AH  RVL GEKTLR+HYANC  YNADFDGDEMN HFPQ ++ RAEAY I   
Sbjct: 571  TLHRPSIQAHKARVLPGEKTLRLHYANCKAYNADFDGDEMNAHFPQTQLGRAEAYTIACT 630

Query: 570  NNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKP 629
            + QY+ P +G PL  LIQDH+VS   LT +  F  R+++CQL+Y + V            
Sbjct: 631  DYQYLVPKDGTPLAGLIQDHMVSGVSLTIRGRFFTRNDYCQLVYMALVD----------- 679

Query: 630  GQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFF 689
                   R    +LP  PA+ KP+ LW+GKQV++ +L++I        + +GG++     
Sbjct: 680  ------KRGPINLLP--PALIKPKTLWSGKQVLSTLLHNI--------IPKGGQM----- 718

Query: 690  KTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSE 749
                            K K+ + + +H+                    +   +    + E
Sbjct: 719  -----------LNLTGKSKIPEKSWIHQ--------------------QVRLASLDNMGE 747

Query: 750  EKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH-G 806
              ++I  ++L+ GV+DK  + +  YGLVH   ELYG   AGTLLS L RLF  FLQ H  
Sbjct: 748  SHVVIRGSELLCGVLDKGHYGNTPYGLVHCCYELYGGEVAGTLLSCLGRLFMNFLQQHRS 807

Query: 807  FTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRG 866
            F+ GV+D+L+    ++ RK  +H S + G  V  +AL LE+G E    +L+  +  A   
Sbjct: 808  FSLGVEDILVTPKADQRRKKAMHKSGKCGDEVVTQALGLEEGTEGQ--ELREAMMDAQFD 865

Query: 867  GGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQ 926
              D  +   D+ M  + +  T ++++   + +GL K    N + LM  SGAKGS VN  Q
Sbjct: 866  RNDRRLRELDLCMKGKTDD-TQNAIVGACMPKGLEKLFPANNLQLMVQSGAKGSSVNCMQ 924

Query: 927  ISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAG 986
            IS  LGQ ELEG+R P M+SGKTLPSF  +D +PRAGGF+  RFLTG+RPQEY+FHCMAG
Sbjct: 925  ISGLLGQIELEGRRPPLMLSGKTLPSFLAYDSSPRAGGFVAGRFLTGIRPQEYFFHCMAG 984

Query: 987  REGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            REGL+DTAVKTSRSGYLQRCLIK+LE + ++YD +VRD+DGSIVQF YGEDG+DV +T F
Sbjct: 985  REGLIDTAVKTSRSGYLQRCLIKHLEGIIVNYDMTVRDSDGSIVQFYYGEDGLDVSKTGF 1044

Query: 1047 IS--KFDALAARERGRGRGR---NKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYI-- 1099
            +S  +F  L        +G     K   +        ++ +   K+CS  L+ S  +   
Sbjct: 1045 LSPKQFPFLTDNSETGSKGNAFDKKVAKRMKKIKKWNKSNKRRSKRCSAFLEFSKEFAEE 1104

Query: 1100 ------------------------MELPDALKD-------NA------------------ 1110
                                     EL +A K+       NA                  
Sbjct: 1105 HDLDNRTLEKTGRSKGATETIRSWQELEEAQKERYIKNDINAPDPVTGVFRPFQYKGVLP 1164

Query: 1111 EKFADK---FLSNEMAK-------QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQ 1160
            E F  K   F  NE+ K       + FLKL+  K   S  QPGE VGLL +QS+GEPSTQ
Sbjct: 1165 ESFLQKIQDFSKNELNKLPTSISEKGFLKLLCDKAESSYCQPGEAVGLLCAQSIGEPSTQ 1224

Query: 1161 MTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            MTLNTFH AGRGEMNVTLGIPRL EIL +AS  IKTP +  P+L
Sbjct: 1225 MTLNTFHFAGRGEMNVTLGIPRLVEILMVASDKIKTPSMEVPIL 1268



 Score = 73.2 bits (178), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 42/76 (55%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG  Q  CPGH GHI L +P YNP  F++LY LLK  CF CH       +    V+K
Sbjct: 77  CQTCGMGQGGCPGHLGHITLPLPTYNPFFFSVLYQLLKGTCFDCHRLAVHSLKSAVLVQK 136

Query: 61  LELIIKGDIIAAKSLD 76
             L+  G I +   +D
Sbjct: 137 FRLLEHGLISSVADVD 152


>gi|358399047|gb|EHK48390.1| hypothetical protein TRIATDRAFT_236383 [Trichoderma atroviride IMI
            206040]
          Length = 1679

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1013 (41%), Positives = 575/1013 (56%), Gaps = 148/1013 (14%)

Query: 246  DVKDIIEKLWENEFELCSFISDMQQ-QGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDS- 303
            +VK  +E+L+  E +L S + + +       K    +FF+ V+LVPP +FR  ++ GDS 
Sbjct: 322  EVKARLEELFHKEQDLLSLVYNAKPPTQSSSKVTPDMFFIKVILVPPNRFRPEARTGDSQ 381

Query: 304  VMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIV---ARWMNLQQSVNVLFD-GKN--- 356
            + E  Q  L   +L     +A+ Y    +    I      W  LQ +VN L D  KN   
Sbjct: 382  ISEAQQNGLYKNILACCSRIAHVYKALEEKRSDITNMHQAWTELQDAVNSLIDKNKNPVQ 441

Query: 357  -AAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALR 415
             AA  R+   GI QLLEKKEGLFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA +
Sbjct: 442  GAAAARN-EEGIKQLLEKKEGLFRKNMMGKRVNYAARSVISPDPNIETNEIGVPPVFAKK 500

Query: 416  LTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM--RISIGRKLDTS 473
            LTYPE VT  N   ++ ++ING +  PGA    ++   +    NK +  RIS+  +L   
Sbjct: 501  LTYPEPVTSHNFKDMQQAVINGVDKWPGAFAIENENGQIVNLRNKSVDDRISLANQL--- 557

Query: 474  RGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH 533
                + P   S    + K V+RHL +GDVVL+NRQPTLHKPSIM H VRVL GEKT+RMH
Sbjct: 558  ----LAPTNSSAARMKNKKVHRHLTNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMH 613

Query: 534  YANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSA 593
            YANC+TYNADFDGDEMN+HFPQ+EV+R EA  I + ++QY+  + G PLR LIQDHI  +
Sbjct: 614  YANCNTYNADFDGDEMNMHFPQNEVARVEALQIADTDHQYLSGTAGKPLRGLIQDHISVS 673

Query: 594  ALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPE 653
              L  +DTF  R ++ QL+YS+    SG        G+R+       +++P  PA+ KP 
Sbjct: 674  VSLCNRDTFFTRSDYQQLVYSALRPESG-----HILGERL-------QLVP--PAVIKPV 719

Query: 654  PLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTN 713
            P WTGKQVI+ +L ++   RPP     GG                          +S+  
Sbjct: 720  PRWTGKQVISTILANM---RPPNC---GGL------------------------TMSENT 749

Query: 714  KMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--AD 771
            ++  ++ GK  E                       E  +LI   + + G++DK+Q   + 
Sbjct: 750  QLKAEQWGKNSE-----------------------EGTVLIQDGEFITGILDKSQIGPSS 786

Query: 772  YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGS 831
             GL+H V E+YG + AG LLS+L RL T +L M  F+CG+DDL +  + E  R+  L  +
Sbjct: 787  SGLIHAVHEIYGPSVAGKLLSSLGRLLTRYLGMRAFSCGMDDLRLTAEGEAARRRELVAA 846

Query: 832  EEIGKRVHLEALELEDGAE-IDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSS 890
            + +G  +    + LE+  + ++P+ L+  +E+  R   D+     D+ M +Q  K  + +
Sbjct: 847  DHLGLGIAANYVSLENQQDALNPLLLE-RLEEVAR--DDSKQEGLDLLM-NQGTKDITDA 902

Query: 891  VINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTL 950
            V   L+  GL K   KN +  MTTSGAKGS+VN   IS +LGQQ LEG+RVP MVSGK+L
Sbjct: 903  VQKALIPNGLEKSFPKNQMQAMTTSGAKGSRVNASLISCNLGQQVLEGRRVPLMVSGKSL 962

Query: 951  PSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1010
            P F P++   RAGG+I++RFLTG+RPQEYYFH MAGREGL+DTAVKTSRSGYLQRC+IK 
Sbjct: 963  PCFRPFETNIRAGGYIVNRFLTGIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCIIKG 1022

Query: 1011 LECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS----------------KFDALA 1054
            +E L +SYD SVRDADGS++QF YGEDG+D+ + +++                 K+D   
Sbjct: 1023 MEGLTVSYDTSVRDADGSLIQFLYGEDGLDITKQNYLKDFKFILQNVTSEAAQLKYDPKV 1082

Query: 1055 ARERGRGR--------------------GRNKFC---DKGSHTFVMGRNQEMIYKKCSGQ 1091
                G  R                    G++      D  ++ F      E  Y      
Sbjct: 1083 GERLGANRQAFQKYMKNAVKHAKAKDPNGKDPLTASFDPATNAFA---TSETFY------ 1133

Query: 1092 LDASNAYIMELPDALKDNAEKFADKFLSN----EMAKQDFLKLVKHKFVLSLAQPGEPVG 1147
             +A   Y+ E PD L    +K  DK +SN     + K++   L   K++ SL +PGE VG
Sbjct: 1134 -EAMTEYLKENPDGLV-REKKSQDKAVSNPNQVTLNKKNAEMLFAMKYLRSLVEPGEAVG 1191

Query: 1148 LLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
            ++A QS+GEPSTQMTLNTFHLAG    NVTLGIPRL+EIL  ASK I TP +T
Sbjct: 1192 IVAGQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASKTISTPAMT 1244



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 40/72 (55%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC   Q  CPGH GHI L VPVY+P+  +  Y LL+  C +C  F+   +++ K   +
Sbjct: 62  CSTCNLNQSNCPGHPGHIQLPVPVYHPVFMDQAYRLLRATCVYCKGFRLPPKDLHKYTCQ 121

Query: 61  LELIIKGDIIAA 72
           L L+  G I  A
Sbjct: 122 LRLLHHGLIREA 133


>gi|327294315|ref|XP_003231853.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
 gi|326465798|gb|EGD91251.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
          Length = 1681

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/1275 (36%), Positives = 660/1275 (51%), Gaps = 156/1275 (12%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q  + C GH GHI+L V VYN   F+ LY LL+  C +CH F+ SR +V     K
Sbjct: 63   CSTCRQNSWSCAGHSGHIELPVHVYNVTFFDQLYRLLRSQCIYCHRFRMSRVQVNNYSCK 122

Query: 61   LELIIKGDIIAAKSL-DLDLPSES---SNPEDSDVSNKSSCSMVTPRGNYDN--VRNLKP 114
            L L+  G I  A  + +++L   +    +  D D  ++    ++  R  Y    + NL  
Sbjct: 123  LRLLQYGLIEEAHIVGNMELRKGARGKDDSSDDDSDDEDDVGLIQRRNAYVKRCIANLPV 182

Query: 115  QEWTSLQF--------AEAKLALLQ-FLK--IETTKCGNCKAKNPRISKPTFGWIHMNGM 163
             + +            AE + +L++ FL+      KC +C   +P   +  +  I    +
Sbjct: 183  HKRSRSHMEIVKDPTAAEMRRSLVRDFLREACAVKKCTSCSGISPAYRRDKYSKIFRKSL 242

Query: 164  PHADIRANLIRGCNLGETFSGGEEEKDLGA---SSDVDAPETHSFNGTFPGTQDTAARRH 220
            P     A +  G  +       EE   L       D  A  T S +      Q  A ++ 
Sbjct: 243  PQKARVAMMEAGFQIPNPLILMEEASRLSQRQKDGDKAAKPTESLDDD--DDQPNAEQQI 300

Query: 221  QKGSGAV----PSGFKKQKDLFSGPLLPS-DVKDIIEKLWENEFELCSFISDMQQQGFGK 275
              G+  +         +  D  S   +PS ++   +  L+  E E+   I D   + F K
Sbjct: 301  TVGNTILMDVEEDAVTQVGDFESQQYVPSSEIHASLHFLFNKEQEILDLIYD--SRPFVK 358

Query: 276  KAGH---SIFFLGVVLVPPIKFRLPSKGG-DSVMEHPQTVLLSKVLQANIYLAN-AYVNQ 330
            K  H   ++FF+  +LVPP KFR  ++ G + +ME  Q     ++++    +   +   Q
Sbjct: 359  KRSHISANMFFIKNILVPPNKFRPAAQQGPNEIMEAQQNTSFGRIIKLCDQINQISRERQ 418

Query: 331  PDNA---------KVIVARWMNLQQSVNVLFDGKNAAGQRDMAS---GICQLLEKKEGLF 378
             D A         + ++   + LQ +VN L D      Q   A    GI Q LEKK+GLF
Sbjct: 419  GDTAGTSRRIRDYRDLLQAIVQLQDAVNSLIDRDRNPSQGLGAQNEDGIKQRLEKKDGLF 478

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRVN+A RSVISPDP +  NEIGIP  FA +LTYPE VT  N  +L+ ++ING 
Sbjct: 479  RKNMMGKRVNFAARSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGP 538

Query: 439  EIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAI----VQPGKDSDNEFEGKMVY 494
            +I+PGA    ++L  +         +S+  K    R AI    + P          K VY
Sbjct: 539  DIYPGAAAVENELGQV---------VSLKFKTVDERVAIANLLLSPSNWKLKRSRNKRVY 589

Query: 495  RHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFP 554
            RHL  GDVVL+NRQPTLHKPSIM H  RVL GE+T+RMHYANC+TYNADFDGDEMN+HFP
Sbjct: 590  RHLTTGDVVLMNRQPTLHKPSIMGHRARVLTGERTIRMHYANCNTYNADFDGDEMNMHFP 649

Query: 555  QDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYS 614
            Q+E++RAEA  + + ++QY+  ++G PLR LIQDH+     LT +D+  + +++ QLLYS
Sbjct: 650  QNEIARAEAMQLADTDHQYLVATSGKPLRGLIQDHLSMGVWLTCRDSLFDENDYHQLLYS 709

Query: 615  SGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRP 674
                         +P     +S    ++  + PAI+KP PLWTGKQ+I+ VL +IT    
Sbjct: 710  -----------CLRPENSHTVS---DKIWLMPPAIFKPLPLWTGKQIISTVLKNITPD-- 753

Query: 675  PFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEE 734
                 R G           N D +S                  D+ G K E      GE 
Sbjct: 754  ----NRAG----------LNLDSKSSTP--------------GDRWGDKAE------GE- 778

Query: 735  KEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLS 792
                             + +   +L+ G++DK+Q      GL+H++ E+YG   AG L+ 
Sbjct: 779  -----------------VTVRDGELISGILDKSQLGPTVGGLIHSIHEVYGHIVAGKLIG 821

Query: 793  ALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALEL-EDGAEI 851
             L RL T  L M  FTCG+DDL + ++   +RK  +  ++ +GK + L+ + L E+  E 
Sbjct: 822  ILGRLLTKVLHMRAFTCGMDDLRLTEEGNAKRKELIQQADGLGKEISLKYVTLDENKVED 881

Query: 852  DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
            +  +L+  +E+ +R   D   A  D    S+  +  SS +    L  GL KP   N +  
Sbjct: 882  EDTELQRRLEEVLR--DDDKHAGLDAMYKSRAGE-LSSEITKACLPSGLEKPFPFNNMQT 938

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            MT SGAKGS VN   IS +LGQQ LEG+RVP M+SGKTLPSF P++    AGG++  RFL
Sbjct: 939  MTVSGAKGSMVNANLISCNLGQQVLEGRRVPVMISGKTLPSFQPFETKIGAGGYVFGRFL 998

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD-ADGSIV 1030
            TG++P EYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E LK  YD SVRD +DGSIV
Sbjct: 999  TGIKPHEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDTSVRDTSDGSIV 1058

Query: 1031 QFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGS-HTFVMGRNQEMIYKKC- 1088
            QF YGEDG+D+ +   +  F  LA          N   D    H+       +   KK  
Sbjct: 1059 QFLYGEDGLDITKQKHLDSFSFLAQNYMSIVSQVNGVKDSSKIHSEEATNWSKAALKKIK 1118

Query: 1089 -SGQLDASNAYIMELP-------------DALKDNAEKFADKFLSN------EMAKQDFL 1128
             +G+++A +  +   P              ALK   +   D  L +      E+ K+ F 
Sbjct: 1119 KTGKIEAKDPALAHFPPGANYGSTSEKFSSALKKYLKSNPDNLLKDKSTGEGEITKKAFT 1178

Query: 1129 KLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILT 1188
             ++  K++ S+  PGE +G++A QSVGEPSTQMTLNTFHLAG    NVTLGIPRL+EI+ 
Sbjct: 1179 TMMNMKYMKSVIDPGEAIGIVAGQSVGEPSTQMTLNTFHLAGHAAKNVTLGIPRLREIVM 1238

Query: 1189 IASKDIKTPVITCPL 1203
             AS  I TP +T  L
Sbjct: 1239 TASSHIMTPTMTLKL 1253


>gi|44889981|emb|CAF32099.1| DNA-directed RNA polymerase i, putative [Aspergillus fumigatus]
          Length = 1692

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/1279 (36%), Positives = 658/1279 (51%), Gaps = 168/1279 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q  + C GH GHI+L V VYN   F+ LY LL+  C +CH F+ +R ++   V K
Sbjct: 79   CTTCRQNSWSCTGHPGHIELPVRVYNVTFFDQLYRLLRAQCVYCHRFQMARVQINAYVCK 138

Query: 61   LELIIKGDIIAAKSLDL------DLPSESSNPEDSDVSNKSSCSMVTPRGNY-------- 106
            L L+  G +   ++++       +    + + +DS    +    +V  R  Y        
Sbjct: 139  LRLLQYGLVDEVEAIEAMGTGQGNKKKSAKDADDSGSEEEDDDDLVARRNAYVKKVIREA 198

Query: 107  ---DNVRNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISKPTFGWIHMN 161
                 ++ +       +   + +  + QF K  +   KC +C        +  F  I   
Sbjct: 199  HAAGRLKGIMSGAKNPMAAEQRRTLVKQFFKDLVSIKKCSSCSG----YRRDRFSKIFRK 254

Query: 162  GMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRH- 220
             +P     A +  G      F        L  +   D     S       T +  +  H 
Sbjct: 255  PLPEKSRLAMVQAG------FQAPNSLILLQQAKKFDMKTKESMANGISDTANAVSESHG 308

Query: 221  -----QKGSGAVPSG-FKKQKDLFSGPLLPS-DVKDIIEKLWENEFELCSFISDMQQQGF 273
                  +G+  V     KK     +G  +PS +V   +  L+E E E+ S I + +    
Sbjct: 309  AEEEVARGNAVVAQAESKKSAAGDAGQYMPSPEVHAAMVLLFEKEKEILSLIYNSRPLPK 368

Query: 274  GK-KAGHSIFFLGVVLVPPIKFRLPS-KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQP 331
             + K    +FF+  +LVPP K+R  + +G   +ME  Q    +++L+ N  + N    + 
Sbjct: 369  KEAKVSPDMFFIKNILVPPNKYRPAAPQGPGEIMEAQQNTPFTQILK-NCDIINQISKER 427

Query: 332  DNA-----------KVIVARWMNLQQSVNVLFDGKN-----AAGQRDMASGICQLLEKKE 375
             NA           + ++   + LQ +VN L D +      AAGQ   A+GI Q+LEKKE
Sbjct: 428  QNAGADSVTRMRDYRDLLHAIVQLQDTVNGLIDKERGASGPAAGQ--AANGIKQILEKKE 485

Query: 376  GLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSII 435
            GLFR+ +MGKRVN+A RSVISPDP +  NEIG+P  FA +LTYPE VT  N  +++ ++I
Sbjct: 486  GLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQAVI 545

Query: 436  NGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG---KM 492
            NG + +PGAT   ++L  +    N K +      LD       Q    S+   +G   K 
Sbjct: 546  NGPDKYPGATAIENELGQV---TNLKFK-----SLDERTALANQLLAPSNWRMKGARNKK 597

Query: 493  VYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVH 552
            VYRHL  GDVVL+NRQPTLHKPSIM H  RVL  E+ +RMHYANC+TYNADFDGDEMN+H
Sbjct: 598  VYRHLTTGDVVLMNRQPTLHKPSIMGHKARVLANERVIRMHYANCNTYNADFDGDEMNMH 657

Query: 553  FPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLL 612
            FPQ+E++RAEA  + +A++QY+  ++G PLR LIQDHI      T +DTF + +++ +LL
Sbjct: 658  FPQNELARAEAMMLADADHQYLVATSGKPLRGLIQDHISMGTWFTCRDTFFDEEDYHELL 717

Query: 613  YSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRG 672
            YS             +P     ++   Q V P L    KP+ LWTGKQVIT +L +I   
Sbjct: 718  YS-----------CLRPENSHTVTERIQLVEPTL---LKPKRLWTGKQVITTILKNIM-- 761

Query: 673  RPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPG 732
             PP                                           ++G   +     PG
Sbjct: 762  -PP------------------------------------------GRAGLNLKSKSSTPG 778

Query: 733  EEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQFADY--GLVHTVQELYGSNTAGT 789
             ++  E N+        E  +I+K+ +++ G++DK Q      GL+  + E+YG   AG 
Sbjct: 779  -DRWGEGNE--------EGTVIFKDGEMLCGILDKKQIGPTAGGLIDAIHEVYGHTIAGR 829

Query: 790  LLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGA 849
            L+S L RL T +L M  FTCG+DDL + K+ +R RK  L  +  IG+ V L+ + L+   
Sbjct: 830  LISILGRLLTRYLNMRAFTCGIDDLRLTKEGDRLRKEKLSQAASIGREVALKYVTLDQTT 889

Query: 850  EIDP-IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNW 908
              D   +L+  +E  +R   D   +  D    ++  K  S+ +    L +GL KP   N 
Sbjct: 890  VPDQDAELRRRLEDVLR--DDDKQSGLDSVSNARTAK-LSTEITQACLPKGLAKPFPWNQ 946

Query: 909  ISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIID 968
            +  MT SGAKGS VN   IS +LGQQ LEG+RVP M+SGKTLPSF  +D  P AGG++  
Sbjct: 947  MQSMTISGAKGSSVNANLISCNLGQQVLEGRRVPVMISGKTLPSFRAFDTHPMAGGYVCG 1006

Query: 969  RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD-ADG 1027
            RFLTG++PQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E L+  YD SVR+ +DG
Sbjct: 1007 RFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRAEYDTSVRESSDG 1066

Query: 1028 SIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRN---KFCDKGSHTFVMGRNQEMI 1084
            SIVQF YGEDG+D+ +   +  FD L +      +  N    F +             M 
Sbjct: 1067 SIVQFLYGEDGLDITKQVHLKDFDFLTSNYVSIMQSVNLTSDFHNLEKDEVTAWHKDAMK 1126

Query: 1085 YKKCSGQLDASNAYIM-------------ELPDALKDNAEKFADKFLSNE-------MAK 1124
              + +G++DA +  +                  ALK   +   DK L ++       ++K
Sbjct: 1127 KVRKTGKVDAMDPVLSVYHPGGNLGSTSEAFSQALKKYEDTNPDKLLRDKKKNIDGLISK 1186

Query: 1125 QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
            + F  L+  K++ S+  PGE VG++ASQS+GEPSTQMTLNTFHLAG    NVTLGIPRL+
Sbjct: 1187 KAFNTLMNMKYLKSVVDPGEAVGIVASQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLR 1246

Query: 1185 EILTIASKDIKTPVITCPL 1203
            EI+  AS  I TP +T  L
Sbjct: 1247 EIVMTASAHIMTPTMTLIL 1265


>gi|453084899|gb|EMF12943.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Mycosphaerella populorum SO2202]
          Length = 1742

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/1305 (35%), Positives = 670/1305 (51%), Gaps = 205/1305 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG +   CPGH GHIDL VP Y+P   + +  LL+  C +C   K  R +V + + K
Sbjct: 62   CATCGLKSPQCPGHPGHIDLPVPCYHPTFMDQVLKLLRASCTYCGKLKLKRIQVTRYICK 121

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQ--EWT 118
            L L+  G +   K LD      +  P D+D ++    +     G   +  +L+ Q   WT
Sbjct: 122  LRLVRYGLLKELKELDEVEHRVTKTPLDADAASDDEPNA----GGDADTEHLQTQLESWT 177

Query: 119  SLQFAEAK------------------LALLQFLK--IETTKCGNCKA------------- 145
            +    +A+                    + +F++   ++ KCG+C               
Sbjct: 178  NRTLKQARKEGRISEQKSEATNQARRAIIAEFMQEITKSKKCGSCGGIGHNYRKDRLVKM 237

Query: 146  -KNPRISKPTFGWIHMNGM----PHADIRANLIRGCNLGETFSGGEEEKDLGASS----- 195
             + P   K +   +   G+    P  +IR  L    N        E   D+  +S     
Sbjct: 238  FRLPLTEKESVAMVQA-GLRTKDPMVEIRRRLRAEQNRKRKRDDDEGVADMDNTSEEEGD 296

Query: 196  DVDAPETHSFNGTFPG-----TQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDI 250
            DVD  E+        G       ++AA +  K S              S  L P  V   
Sbjct: 297  DVDMDESEGEPEIVGGVVLDDAMESAATKKAKASTE------------SEYLNPQRVHAH 344

Query: 251  IEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQT 310
            I++L++++ E+ S +    ++  G  +   +FF+  +LVPP ++R   K   + +   Q 
Sbjct: 345  IQQLFDSDAEVLSLVYGRDRRRDGPLSA-DMFFVKAILVPPNQYRPEMKTTSNAIAEAQE 403

Query: 311  VLLSKVLQANIYLANAYVNQPDNAKV------------IVARWMNLQQSVNVLFDGK--- 355
                + + AN  +      +    K             +  RW+ LQ+ VN L D     
Sbjct: 404  NKHYRDILANCEVILDVQRELTTGKKAENRYRDVTYLDLERRWITLQECVNSLVDKSLAP 463

Query: 356  -NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFAL 414
             + A    +  G+ Q LEKKEG+FR+ +MGKRVN+A R+VISPDP +  NEIG+PP FA+
Sbjct: 464  VSGAAASQVPDGVKQKLEKKEGMFRKYMMGKRVNFAARTVISPDPNIETNEIGVPPVFAV 523

Query: 415  RLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM----RLPPNKKMRISIGRKL 470
            +LTYPE VT +NV +L+ ++ NG  I PGA     +   +    R   +++  ++     
Sbjct: 524  KLTYPEPVTQYNVEELQLAVRNGPYIWPGAVAIESENGAVVKLERKSADERTALANALMA 583

Query: 471  DTSRGAIV-QPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
             T+ G  +  PG         K V+RHL +GD+V++NRQPTLHKPS+M H  RVL GEKT
Sbjct: 584  PTTSGTYLGTPGT------RPKKVHRHLNNGDIVIMNRQPTLHKPSMMCHRARVLPGEKT 637

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
            LRMHYANC+TYNADFDGDEMN+HFPQ+E++RAEA  I + ++QY+  + G+PLR LIQDH
Sbjct: 638  LRMHYANCNTYNADFDGDEMNLHFPQNELARAEALTIADTDHQYISATAGNPLRGLIQDH 697

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            I  +  L  +D F  R ++  +LY++     G     G+            E +P  PAI
Sbjct: 698  ISMSVFLCSRDMFFERGDYMNMLYAALRPEDG-HCVNGR-----------METVP--PAI 743

Query: 650  WKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKL 709
             KP+PLWTGKQVI++VL ++T              P        N+   +          
Sbjct: 744  IKPKPLWTGKQVISSVLKNLT--------------PHGAQGLTLNSKSTT---------- 779

Query: 710  SKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQ 768
                           E + G PG + EAE              +I+K+ +LV+G++DK Q
Sbjct: 780  --------------AETMWG-PGGKGEAE--------------VIFKDGELVQGILDKKQ 810

Query: 769  F--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKN 826
               +  G V+ V E YG   AG LLS L RL T    M  F+CGV+D++  ++ E  R+ 
Sbjct: 811  IGPSSGGFVNAVYEAYGHTIAGRLLSVLGRLLTKLEHMRAFSCGVEDVIFTRNGEVNRRK 870

Query: 827  HLHGSEEIGKRVHLEALELED-GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNK 885
             L G++ +G  V  + + L+    + +  +L+  +E  +R   D  +   D  M ++  K
Sbjct: 871  ALAGADTVGLSVSAKYVTLDSQKPKSNDRELRRRLEDVLRD--DTKLHTLDALMNAETGK 928

Query: 886  HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMV 945
              SS V N  +  GL KP  KN +  MT SGAKG+KVN   IS +LGQQ LEG+RVP MV
Sbjct: 929  -LSSEVSNTCMPAGLSKPFPKNQMQTMTMSGAKGTKVNANLISCNLGQQVLEGRRVPVMV 987

Query: 946  SGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQR 1005
            SGKTLP F P++ + RAGG+I+DRFLTG+RPQEY+FH MAGREGL+DTAVKTSRSGYLQR
Sbjct: 988  SGKTLPCFKPFETSVRAGGYIVDRFLTGIRPQEYFFHAMAGREGLIDTAVKTSRSGYLQR 1047

Query: 1006 CLIKNLECLKISYDYSVRDA-DGSIVQFCYGEDGVDVHQTSFISKFDALAA------RER 1058
            CLIK +E L++ YD SVR+  DGSIVQF YGEDG+D+ +  +++ F   A          
Sbjct: 1048 CLIKGMEGLRVEYDSSVRNTEDGSIVQFLYGEDGLDIGKAKYMNDFKFTAENYLSLFHSM 1107

Query: 1059 GRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELP---------DALKDN 1109
              G        + +      +  E  Y+K +G L AS+  + + P         + +  +
Sbjct: 1108 NMGEAFGNLVSEDAKD--ANKAAEKRYRK-TGDLGASDPALSQYPPGRHIGSVSENILAS 1164

Query: 1110 AEKFADKFLSNEM--------------AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVG 1155
            + ++ DK   NEM              +K++F  ++  +++ S+ + GE VG++A QSVG
Sbjct: 1165 SREWIDK---NEMRLIKDKKKNIEGTVSKKNFNHILDVRYMKSVVEAGEAVGVVAGQSVG 1221

Query: 1156 EPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
            EPSTQMTLNTFHLAG    NVTLGIPRL+EI+  A+  I TP +T
Sbjct: 1222 EPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTAASKISTPQMT 1266


>gi|214028092|gb|ACJ63315.1| RNA polymerase I large subunit [Liriodendron tulipifera]
          Length = 558

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/616 (58%), Positives = 440/616 (71%), Gaps = 66/616 (10%)

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            VHFPQDE+SRAEA  I NAN QYV P++G P+R LIQDHIVSA LLTKKDTFL RDE+  
Sbjct: 1    VHFPQDEISRAEAIEIANANKQYVVPTSGAPIRGLIQDHIVSAVLLTKKDTFLTRDEYHM 60

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            LLY+SGVS++  GS+ GK GQ+V    S+ E+ PL P IWKP+PLWTGKQVIT +LNHIT
Sbjct: 61   LLYASGVSTAASGSYVGKFGQKVCTLSSDDEIQPLPPVIWKPKPLWTGKQVITTILNHIT 120

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
            RG PPF V++ GK+    F + +      D                    G KKE+VEG 
Sbjct: 121  RGHPPFTVKKEGKIEDGCFYSEWKEGNMVD--------------------GVKKEIVEGC 160

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTL 790
                   +  KSK K+    KL+I+KN+LV GVIDK QFA YG+VHTVQELYGSNTAG L
Sbjct: 161  ------FKHCKSKGKK---HKLIIWKNELVHGVIDKNQFAKYGMVHTVQELYGSNTAGIL 211

Query: 791  LSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAE 850
            LS LSRLFTVFLQMHGFTCGVDDLLI++  + +R+  L   E IG  VH + +    GA+
Sbjct: 212  LSVLSRLFTVFLQMHGFTCGVDDLLIVQQSDLKRQMILEKHENIGTNVHSKLI----GAK 267

Query: 851  I-DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWI 909
            I +P+KL+ EIE+A+R  G++AV Y DM M+ +LN   ++ + + ++  GLLKP  +N +
Sbjct: 268  ITEPMKLQMEIERAIRSHGESAVTYLDMLMSHELNG-VTTEINDAIIPSGLLKPFPRNCL 326

Query: 910  SLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDR 969
            SLMTT+GAKGS+VNF QISS LGQQ+LEGKRVPRMVSGKTLP F PWD A RAGGFI DR
Sbjct: 327  SLMTTTGAKGSQVNFTQISSLLGQQQLEGKRVPRMVSGKTLPCFPPWDTAARAGGFIGDR 386

Query: 970  FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSI 1029
            FLTGLRPQEYYFHCMAGREGLVDTA+KTSRSGYLQRCLIKNLECL++ YD++VRDADGS+
Sbjct: 387  FLTGLRPQEYYFHCMAGREGLVDTAIKTSRSGYLQRCLIKNLECLRVCYDHTVRDADGSV 446

Query: 1030 VQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCS 1089
            VQFCYGEDGVDVH+TSFI++F +LA                        +NQ +I +K S
Sbjct: 447  VQFCYGEDGVDVHKTSFITEFKSLA------------------------QNQRIILEKHS 482

Query: 1090 GQL-DASNAYIMELPDALKDNAEKFA-----DKFLSNEMAKQ-DFLKLVKHKFVLSLAQP 1142
            GQ  D SN+YI ELPDAL+  A+ F       K  S  + KQ +F+ LVK K++ SLAQP
Sbjct: 483  GQHEDPSNSYINELPDALRGKAKDFIGTLSKKKRDSFHLRKQKNFMNLVKLKYLSSLAQP 542

Query: 1143 GEPVGLLASQSVGEPS 1158
            GE VG+LA+QS+GEPS
Sbjct: 543  GEAVGVLAAQSIGEPS 558


>gi|169763190|ref|XP_001727495.1| DNA-directed RNA polymerase i [Aspergillus oryzae RIB40]
 gi|238489071|ref|XP_002375773.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Aspergillus
            flavus NRRL3357]
 gi|83770523|dbj|BAE60656.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|220698161|gb|EED54501.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Aspergillus
            flavus NRRL3357]
 gi|391869753|gb|EIT78948.1| RNA polymerase I, large subunit [Aspergillus oryzae 3.042]
          Length = 1673

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/1286 (36%), Positives = 669/1286 (52%), Gaps = 183/1286 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC    + C GH GHI+L V VYN   F+ +Y LL+  C +CH  + SR +V     K
Sbjct: 63   CTTCRMSSWSCTGHPGHIELPVHVYNVTHFDQMYRLLRAQCVYCHRLQMSRTQVNAYTCK 122

Query: 61   LELIIKG---DIIAAKSLDLDLPSESS---NPEDSDVSNKSSCSMVTPRGNYDNVRNLKP 114
            L L+  G   ++ A +S++L   S+ S     E  D  ++    +V  R  +      + 
Sbjct: 123  LRLLQYGLVDEVAALESMELKKGSKKSAKDGDESEDDGDEDEDDLVKRRNVFVKKAIREA 182

Query: 115  QEWTSLQ----------FAEAKLALLQ-FLK--IETTKCGNCKAKNPRISKPTFGWIHMN 161
            Q    L+           AE + A+++ F K  +   KC NC   +P   +  +  I   
Sbjct: 183  QASGKLKGLMAGAKNPIAAEQRRAVVRDFFKDIVGIKKCANCSGISPGYRRDRYSKIFRK 242

Query: 162  GMPHADIRANLIRGCN-------LGETFSGGEEEKDLGASSDVDA-PETHSFNGTFPGTQ 213
             +P     A    G N       L ET     +EK+   + +     E+H       G +
Sbjct: 243  ALPEKAKLAMQQAGYNASNSLIILQETRKFNRKEKEALVNDNASTTSESH-------GAE 295

Query: 214  DTAARRHQKGSGAVPSGFKKQKDLFSGPLLPS-DVKDIIEKLWENEFELCSFISD---MQ 269
            +  AR       A+ +    +K    G  +PS +V   I  L+  E E+ + +     M 
Sbjct: 296  EEVAR-----GNAILAQVDNKKTGDGGQFMPSPEVHAAISLLFVKEEEILNLVYTSRPMS 350

Query: 270  QQGFGKKAGHSIFFLGVVLVPPIKFR-LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYV 328
            ++     AG  +FF+  +LVPP K+R + S+G  +V+E  Q  + +++L+ N  + N   
Sbjct: 351  KKESRVDAG--MFFIKNLLVPPNKYRPVASQGAGAVVEAQQNTVFTQILK-NCDIINQIS 407

Query: 329  NQPDNA-----------KVIVARWMNLQQSVNVLFD----GKNAAGQRDMASGICQLLEK 373
             +  N            + ++   + LQ +VN L D    G +        +GI Q+LEK
Sbjct: 408  KERQNGGSDSAMRVRDYRDLLHAIVQLQDTVNGLIDRDRSGLSGPAAASAPNGIKQILEK 467

Query: 374  KEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDS 433
            KEGLFR+ +MGKRVN+A RSVISPDP +  NEIG+P  FA +LTYPE VT  N  +++ +
Sbjct: 468  KEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQA 527

Query: 434  IINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG--- 490
            +ING + +PGA    ++   +    N K +      LD       Q    S+   +G   
Sbjct: 528  VINGPDKYPGAAAIENEFGQV---TNLKFK-----SLDERTALANQLLAPSNWRMKGSRN 579

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
            K VYRHL  GDVVL+NRQPTLHKPSIM H  RVL  E+ +RMHYANC+TYNADFDGDEMN
Sbjct: 580  KKVYRHLTTGDVVLMNRQPTLHKPSIMGHKARVLANERVIRMHYANCNTYNADFDGDEMN 639

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +HFPQ+E++RAEA  + +A++QY+  ++G PLR LIQDHI  +   T +D+F + +++ +
Sbjct: 640  MHFPQNELARAEAMMLADADHQYLVATSGKPLRGLIQDHISMSTWFTCRDSFFDEEDYHE 699

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            LLYS             +P     I+   Q V P +    KP+ LWTGKQ+IT +L +I 
Sbjct: 700  LLYS-----------CLRPENSHTITERIQVVAPTM---IKPKRLWTGKQIITTILKNIM 745

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
               PP                                          +++G   +     
Sbjct: 746  ---PP------------------------------------------NRAGLNMKSKSST 760

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQFADY--GLVHTVQELYGSNTA 787
            PG+         +  E +EE  +++K+ +L+ G++DK Q      GL+ ++ E+YG   A
Sbjct: 761  PGD---------RWGEGNEEGTVLFKDGELLCGILDKKQIGPTAGGLIDSIHEIYGHTIA 811

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED 847
            G L+  L RL T FL M  FTCG+DDL + K+ +R RK  L  + EIG+ V L+ + L+ 
Sbjct: 812  GRLIGILGRLLTRFLNMRAFTCGIDDLRLTKEGDRVRKEKLSKASEIGREVALKYVTLDQ 871

Query: 848  GAEIDP-IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
                D   +L+  +E  +R   D   +  D  +++    + S+ +    L  GL+KP   
Sbjct: 872  TKVADEDTELRRRLEDVLR--DDEKQSGLD-SVSNARTANLSTEITKACLPGGLVKPFPW 928

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
            N +  MT SGAKGS VN   IS +LGQQ LEG+RVP M+SGKTLPSF  +D  P AGG++
Sbjct: 929  NQMQSMTISGAKGSSVNANLISCNLGQQVLEGRRVPVMISGKTLPSFRAFDTNPMAGGYV 988

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDA- 1025
              RFLTG++PQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E L+  YD SVR+A 
Sbjct: 989  CGRFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRAEYDTSVREAS 1048

Query: 1026 DGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQE--- 1082
            DGSIVQF YGEDG+D+ +   +  FD LA+        ++      S  F    N+E   
Sbjct: 1049 DGSIVQFLYGEDGLDITKQVHLKDFDFLASNY------KSIISQVNSSDFHTLENEEVGE 1102

Query: 1083 -----MIYKKCSGQLDASNAY--IMELPDALKDNAEKFADKFLSNE-------------- 1121
                 M   + +G++DA +    I      L   +E FA      E              
Sbjct: 1103 WHKDAMRKVRKTGKVDAMDPVLSIYHPGGNLGSTSELFAQAVKKYEDGNPDKLLKDKKKS 1162

Query: 1122 ----MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVT 1177
                ++K+ F  ++  K++ S+  PGE VG++A QS+GEPSTQMTLNTFHLAG    NVT
Sbjct: 1163 IEGILSKKSFGNMMNMKYLKSVVDPGEAVGIVAGQSIGEPSTQMTLNTFHLAGHSAKNVT 1222

Query: 1178 LGIPRLQEILTIASKDIKTPVITCPL 1203
            LGIPRL+EI+  AS  I TP +T  L
Sbjct: 1223 LGIPRLREIVMTASAHIMTPTMTLIL 1248


>gi|207340851|gb|EDZ69074.1| YOR341Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1317

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/968 (41%), Positives = 559/968 (57%), Gaps = 126/968 (13%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVN----QPD----- 332
            FF+ V++VPP +FRLPSK G+ V E+ Q  LLSKVL  ++ + +   +    Q D     
Sbjct: 8    FFMDVLVVPPTRFRLPSKLGEEVHENSQNQLLSKVLTTSLLIRDLNDDLSKLQKDKVSLE 67

Query: 333  NAKVIVARWMN----LQQSVNVLFDGKNAAGQ---RDMASGICQLLEKKEGLFRQKLMGK 385
            + +VI +R MN    +Q  VN   D   A G+   +    G+ Q LEKKEGLFR+ +MGK
Sbjct: 68   DRRVIFSRLMNAFVTIQNDVNAFIDSTKAQGRTSGKVPIPGVKQALEKKEGLFRKHMMGK 127

Query: 386  RVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGAT 445
            RVNYA RSVISPDP +  NEIG+PP FA++LTYPE VT +N+ +LR ++ING +  PGAT
Sbjct: 128  RVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGAT 187

Query: 446  HYLDKLSTMRLPPNKKMRIS-IGRKLDTSRG---AIVQPGKDSDNEFEGKMVYRHLQDGD 501
               ++  ++         +S IG  ++  +     ++ P  +       K VYRH+++ D
Sbjct: 188  QIQNEDGSL---------VSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKVYRHIKNRD 238

Query: 502  VVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRA 561
            VVL+NRQPTLHK S+M H VRVL  EKTLR+HYAN   YNADFDGDEMN+HFPQ+E +RA
Sbjct: 239  VVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARA 298

Query: 562  EAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSG 621
            EA N+ N ++QY+ P++G P+R LIQDHI +   LT KD+F  R+++ Q +Y        
Sbjct: 299  EALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIY-------- 350

Query: 622  LGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERG 681
             G    + G     +RS+   LP  P I+KP PLWTGKQ+IT VL ++T   PP      
Sbjct: 351  -GCIRPEDGH---TTRSKIVTLP--PTIFKPYPLWTGKQIITTVLLNVT---PP------ 395

Query: 682  GKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNK 741
                                       +   N + K+K                   KN+
Sbjct: 396  --------------------------DMPGINLISKNKI------------------KNE 411

Query: 742  SKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFT 799
               K   E ++L     L+ G++DK+Q+  + YG+VH++ E+YG   A  +LS L RLFT
Sbjct: 412  YWGKGSLENEVLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSVLGRLFT 471

Query: 800  VFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSE 859
             ++    FTCG+DDL +  +  + R + L  S + G+    E   L+     D  +L   
Sbjct: 472  NYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPADDPELLKR 531

Query: 860  IEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKG 919
            +++ +R    + +   D   +S++N  TS  V+++ + +G +K    N +  M  SGAKG
Sbjct: 532  LQEILRDNNKSGI--LDAVTSSKVNAITSQ-VVSKCVPDGTMKKFPCNSMQAMALSGAKG 588

Query: 920  SKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEY 979
            S VN  QI   LGQQ LEG+RVP MVSGKTLPSF P++    AGG++  RF +G++PQEY
Sbjct: 589  SNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGIKPQEY 648

Query: 980  YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            YFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + +SYD S+RDADG++VQF YG D +
Sbjct: 649  YFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMYGGDAI 708

Query: 1040 DVHQTSFISKFD-------ALAAR------------ERGRGRGRNKFCDKGSHTFVMGRN 1080
            D+ + S +++F+       AL  +            E      +     +  H+      
Sbjct: 709  DITKESHMTQFEFCLDNYYALLKKYNPSALIEHLDVESALKYSKKTLKYRKKHSKEPHYK 768

Query: 1081 QEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADK----FLSNE-MAKQDFLKLVKHKF 1135
            Q + Y     + + +  Y+  + +  +D  E F DK    F S++ + ++ F  L++ K+
Sbjct: 769  QSVKYDPVLAKYNPAK-YLGSVSENFQDKLESFLDKNSKLFKSSDGVNEKKFRALMQLKY 827

Query: 1136 VLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIK 1195
            + SL  PGE VG++ASQSVGEPSTQMTLNTFH AG G  NVTLGIPRL+EI+  AS  IK
Sbjct: 828  MRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASAAIK 887

Query: 1196 TPVITCPL 1203
            TP +T P+
Sbjct: 888  TPQMTLPI 895


>gi|340514005|gb|EGR44276.1| predicted protein [Trichoderma reesei QM6a]
          Length = 1666

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1005 (41%), Positives = 562/1005 (55%), Gaps = 133/1005 (13%)

Query: 246  DVKDIIEKLWENEFELCSFISDMQQ-QGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDS- 303
            +V+  +E+L+  E +L S + + +      +K    +FF+ VVLVPP +FR  ++ GDS 
Sbjct: 296  EVRARLEELFRKEQDLLSLVYNAKPPTQSSQKVTPDMFFITVVLVPPNRFRPEARTGDSQ 355

Query: 304  VMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA---RWMNLQQSVNVLFD------- 353
            + E  Q  L   +L     +A  Y    +    + +    W  LQ +VN L D       
Sbjct: 356  ISEAQQNALYKNILGCCSRIARVYKGLEEKTSDMASMHQAWTELQDAVNSLIDKNKNPVQ 415

Query: 354  GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
            G  AA   D   GI QLLEKKEGLFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA
Sbjct: 416  GAAAARTED---GIKQLLEKKEGLFRKNMMGKRVNYAARSVISPDPNIETNEIGVPPVFA 472

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM--RISIGRKLD 471
             +LTYPE VT  N   ++ ++ING +  PGA    ++   +    NK +  RIS+  +L 
Sbjct: 473  KKLTYPEPVTSHNFKDMQQAVINGVDKWPGAFAIENENGQIVNLRNKSVDDRISLANQL- 531

Query: 472  TSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLR 531
                  + P   +      K V+RHL +GDVVL+NRQPTLHKPSIM H VRVL GEKT+R
Sbjct: 532  ------LAPTNSNSARTRNKKVHRHLTNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIR 585

Query: 532  MHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIV 591
            MHYANC+TYNADFDGDEMN+HFPQ+EV+R EA  I + ++QY+  + G PLR LIQDHI 
Sbjct: 586  MHYANCNTYNADFDGDEMNMHFPQNEVARVEALQIADTDHQYLSGTAGKPLRGLIQDHIS 645

Query: 592  SAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWK 651
             +  L  +DTF NR +F QL+YS+    SG        G+R+ +                
Sbjct: 646  VSVALCSRDTFFNRSDFQQLIYSALRPESG-----HILGERIQLPPPAIIKP-------- 692

Query: 652  PEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSK 711
              P WTGKQVI+ +L ++   RPP     GG                          +S+
Sbjct: 693  -APRWTGKQVISTILANM---RPPNC---GGL------------------------TMSE 721

Query: 712  TNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF-- 769
              ++  ++ G   E                       E  +LI   + + G++DK+Q   
Sbjct: 722  NAQLKAEQWGAGSE-----------------------EGVVLIQDGEFITGILDKSQIGP 758

Query: 770  ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLH 829
            +  G++H V E+YG   AG LLSAL RL T +L M  F+CG+DDL +  + E  R+  L 
Sbjct: 759  SSSGMIHAVHEIYGPAIAGKLLSALGRLLTRYLGMRAFSCGMDDLRLTAEGEAARRRELL 818

Query: 830  GSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSS 889
             ++++G ++    + LE+  +     L   +E+ MR   D+     D+ M +Q +K  + 
Sbjct: 819  AADKLGLKIASSYVSLENQEDAQNPLLLERLEEVMR--DDSKQEGLDLLM-NQGSKDITD 875

Query: 890  SVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKT 949
            +V   L+  GL K   KN + +MTTSGAKGS+VN   IS +LGQQ LEG+RVP MVSGKT
Sbjct: 876  AVQKALIPNGLEKNFPKNQMQVMTTSGAKGSRVNASLISCNLGQQVLEGRRVPVMVSGKT 935

Query: 950  LPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK 1009
            LPSF P+D   RAGG+I++RFLTG+RPQEYYFH MAGREGL+DTAVKTSRSGYLQRC+IK
Sbjct: 936  LPSFRPFDTNIRAGGYIVNRFLTGIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCIIK 995

Query: 1010 NLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS----------------KFDAL 1053
             +E L ++YD SVRDADGS++QF YGEDG+DV + +++                 K+D  
Sbjct: 996  GMEGLTVNYDTSVRDADGSLIQFLYGEDGLDVTKQNYLKDFRFILQNVTSEAAQLKYDPK 1055

Query: 1054 AARERGRGR----------------GRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNA 1097
                 G  R                G  K  D  + +F    N    +       +A   
Sbjct: 1056 VGERLGANRQAFQKYMKSAVRHAKAGDRKGKDPLTASFDPATNA---FATSETFYEAMTD 1112

Query: 1098 YIMELPDAL--KDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVG 1155
            YI E PD L  + N++  A       + K++   L   K++ SL +PGE VG++A QSVG
Sbjct: 1113 YIRENPDGLVREKNSQDKAPLQQKVTLNKKNAEMLFAMKYLRSLVEPGEAVGIVAGQSVG 1172

Query: 1156 EPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
            EPSTQMTLNTFHLAG    NVTLGIPRL+EIL  AS+ I TP +T
Sbjct: 1173 EPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASRTISTPAMT 1217



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC   Q  CPGH GHI L VPVY+P+  +  Y LL+  C +C  F+   +++ K   +
Sbjct: 62  CATCNLNQNNCPGHPGHIQLPVPVYHPVFLDQAYRLLRATCVYCKGFRLPPKDLHKYTCQ 121

Query: 61  LELIIKGDI 69
           L L+  G I
Sbjct: 122 LRLLHHGLI 130


>gi|315056319|ref|XP_003177534.1| DNA-directed RNA polymerase I subunit RPA1 [Arthroderma gypseum CBS
            118893]
 gi|311339380|gb|EFQ98582.1| DNA-directed RNA polymerase I subunit RPA1 [Arthroderma gypseum CBS
            118893]
          Length = 1679

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/1275 (36%), Positives = 654/1275 (51%), Gaps = 157/1275 (12%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q  + C GH GHI+L V VYN   F+ LY LL+  C +CH F+ SR +V     K
Sbjct: 63   CSTCRQNSWSCAGHSGHIELPVHVYNVTFFDQLYRLLRSQCIYCHRFRMSRAQVNNYSCK 122

Query: 61   LELIIKGDIIAAKSL-DLDLPSES---SNPEDSDVSNKSSCSMVTPRGNYDN--VRNLKP 114
            L L+  G I  A ++ +++L   +    +  D D  ++    ++  R NY    + +L  
Sbjct: 123  LRLLQYGLIEEAHTVGNMELRKGARGKDDSSDDDSDDEDDVDLIHRRNNYVKRCIASLPV 182

Query: 115  QEWTSLQF--------AEAKLALLQ-FLK--IETTKCGNCKAKNPRISKPTFGWIHMNGM 163
            Q+ +            AE +  L++ FLK      KC +C   +P   +  +  I    +
Sbjct: 183  QKRSRSHMEIVKDPTAAEMRRNLVRDFLKEACAVKKCTSCSGISPAYRRDKYSKIFRKSL 242

Query: 164  PHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKG 223
            P     A +  G  +       EE   L                     Q  A ++   G
Sbjct: 243  PQKARIAMMEAGFQVPNPLVLMEEANRLSQRQKEGKKPAKLAEPLDSDNQINAEQQISVG 302

Query: 224  SGAV----PSGFKKQKDLFSGPLLPS-DVKDIIEKLWENEFELCSFISDMQQQGFGKKAG 278
            +  +     +   +  D  S   +PS ++   +  L+  E E+   I D   + F KK  
Sbjct: 303  NVMLMDVEEAAVTQVGDSDSQQYVPSSEIHASLHFLFNKEQEILDLIYD--SRPFVKKRS 360

Query: 279  H---SIFFLGVVLVPPIKFRLPSKGG-DSVMEHPQTVLLSKVLQANIYL----------A 324
            H   ++FF+  +LVPP KFR  ++ G + +ME  Q     ++++    +          +
Sbjct: 361  HISPNMFFIKNILVPPNKFRPAAQQGPNEIMEAQQNTSFGRIIKLCDQINQISRERQGDS 420

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVNVLFD-----GKNAAGQRDMASGICQLLEKKEGLFR 379
                 +  + + ++   +NLQ +VN L D      + A  Q +   GI Q LEKK+GLFR
Sbjct: 421  TGTSRRIRDYRDLLQAIVNLQDAVNSLIDRDRNPSQGAGAQNE--DGIKQRLEKKDGLFR 478

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
            + +MGKRVN+A RSVISPDP +  NEIGIP  FA +LTYPE VT  N  +L+ ++ING +
Sbjct: 479  KNMMGKRVNFAARSVISPDPNIETNEIGIPLVFAKKLTYPEPVTNHNYWELKQAVINGPD 538

Query: 440  IHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAI----VQPGKDSDNEFEGKMVYR 495
            ++PGA    ++L  +         +S+  K    R AI    + P          K VYR
Sbjct: 539  VYPGAAAVENELGQV---------VSLKFKTVDERIAIANLLLSPSNWKLKRSRNKRVYR 589

Query: 496  HLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQ 555
            HL  GDVVL+NRQPTLHKPSIM H  RVL GE+T+RMHYANC+TYNADFDGDEMN+HFPQ
Sbjct: 590  HLTTGDVVLMNRQPTLHKPSIMGHRARVLTGERTIRMHYANCNTYNADFDGDEMNMHFPQ 649

Query: 556  DEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSS 615
            +E++RAEA  + + ++QY+  ++G PLR LIQDH+     LT +D+F +  ++ QLLYS 
Sbjct: 650  NEIARAEAMQLADTDHQYLVATSGKPLRGLIQDHLSMGVWLTCRDSFFDESDYHQLLYS- 708

Query: 616  GVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI-TAVLNHITRGRP 674
                        +P     +S    ++  + PAI+KP+PLWTGKQ+I T + N     R 
Sbjct: 709  ----------CLRPENSHTVS---DKIWLMPPAIFKPQPLWTGKQIISTVLKNITPDNRA 755

Query: 675  PFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEE 734
               ++     P D +                                          G++
Sbjct: 756  GLNLDSKSSTPGDRW------------------------------------------GDK 773

Query: 735  KEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLS 792
             EAE             +     +L+ G++DK+Q      GL+H++ E+YG   AG L+ 
Sbjct: 774  AEAE-------------VTFRDGELISGILDKSQLGPTVGGLIHSIHEVYGHIVAGKLIG 820

Query: 793  ALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID 852
             L RL T  L M  FTCG+DDL + ++   +RK  +  +E +G  + L+ + L++    +
Sbjct: 821  ILGRLLTKVLHMRAFTCGMDDLRLTEEGNAKRKELIQRAEGLGNEISLKYVTLDENKVEN 880

Query: 853  PIK-LKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
                LK  +E+ +R   D   A  D    S+  +  SS +    L  GL KP   N +  
Sbjct: 881  EEVELKRRLEEVLRD--DDKHAGLDAMYKSRAGE-LSSEITKACLPSGLEKPFPLNNMQT 937

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            MT SGAKGS VN   IS +LGQQ LEG+RVP M+SGKTLPSF P++    AGG++  RFL
Sbjct: 938  MTVSGAKGSMVNANLISCNLGQQVLEGRRVPVMISGKTLPSFQPFETKIGAGGYVFGRFL 997

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD-ADGSIV 1030
            TG++P EYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E LK  YD SVRD +DGSIV
Sbjct: 998  TGIKPHEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDTSVRDTSDGSIV 1057

Query: 1031 QFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGS-HTFVMGRNQEMIYKKC- 1088
            QF YGEDG+D+ +   +  F  LA          N   D    H        +   KK  
Sbjct: 1058 QFLYGEDGLDITKQKHLDSFTFLAQNYMSIVSQVNGVNDSSKVHNEEASNWTKAAMKKIK 1117

Query: 1089 -SGQLDASNAYIMELPDALK--DNAEKFAD---KFLSN--------------EMAKQDFL 1128
             +G+++A +  +   P        +EKF+    K+L +              E+ K+ F 
Sbjct: 1118 KTGKIEAKDPALAHFPPGANYGSTSEKFSSALKKYLKSNPDNLLKDKSTGEGEITKKAFT 1177

Query: 1129 KLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILT 1188
             ++  K++ S+  PGE +G++A QSVGEPSTQMTLNTFHLAG    NVTLGIPRL+EI+ 
Sbjct: 1178 TMMNMKYMKSVIDPGEAIGIVAGQSVGEPSTQMTLNTFHLAGHAAKNVTLGIPRLREIVM 1237

Query: 1189 IASKDIKTPVITCPL 1203
             AS  I TP +T  L
Sbjct: 1238 TASNHIMTPTMTLKL 1252


>gi|378727241|gb|EHY53700.1| DNA-directed RNA polymerase I subunit A1 [Exophiala dermatitidis
            NIH/UT8656]
          Length = 1744

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/1283 (35%), Positives = 669/1283 (52%), Gaps = 152/1283 (11%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC      C GH GHI+L VP Y+P   +    LL+  C +CH FKA+   + + V  
Sbjct: 65   CSTCRMNAIHCSGHCGHIELPVPCYHPQYMDSTLRLLRAKCAYCHRFKAAPNYINQTVCA 124

Query: 61   LELIIKG-----DIIAAKSLDL-------------DLPSESSNPEDSDVSNKSSCSMVTP 102
            L L+  G     + I A  L               D+  + +  E  D+ ++ + +    
Sbjct: 125  LRLLQYGLVEEYETIKAMHLGGKKPKKPKTDDIVEDILEDDAGEEIEDLIDRRTRATNKA 184

Query: 103  RGNYDNVRNLKPQEWTS--LQFAEAKLALLQFLK--IETTKCGNC--------KAKNPRI 150
                     + PQ      +  A  K  +  FLK      KC NC        K +N +I
Sbjct: 185  IKRARKKGLIDPQALIKNPVAIAARKAVIADFLKEIPHLRKCANCGGATHTYRKDRNVKI 244

Query: 151  SKPTFGWIHMNGMPHADIRAN--LI--------RGCNLGETFSGGEEEKDLGASSDVDAP 200
             K          M    ++A   LI        +   + +    G  ++D+ A SD    
Sbjct: 245  FKKPLALRLKEEMRVLAMKAPNPLIFLQSERKQKEAAVKKHMVNGHHDEDV-AMSDAAES 303

Query: 201  ETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFE 260
            ET   +G     ++ A R   + +    +   + +D     + P++V   +  L++ E E
Sbjct: 304  ETTEAHG---AEEEIAMRNALETAAQSKNAEVEDEDDVQSYMTPNEVYAALTLLFDREQE 360

Query: 261  LCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFR-LPSKGGDSVMEHPQTVLLSKVLQA 319
            + S +   Q           +FF+  VLVPP +FR L  +G D ++E+     L+K+++A
Sbjct: 361  VLSLMYASQPGRKHAPVSPDMFFMTAVLVPPNRFRPLARQGPDQMLENQMNGTLNKIIKA 420

Query: 320  ----NIYLANAYVNQPDNAKVIVARWMN--------LQQSVNVLFDGKNAAGQRDMASGI 367
                   L +    + D++  +  R +N        LQ++VN L D    A  +    GI
Sbjct: 421  ANDVRHILRDMKRARTDDS--VRPRTLNESIQAAIVLQETVNALIDSPPPASGKPTDQGI 478

Query: 368  CQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNV 427
             Q+LEKKEGLFR  +MGKRVN+A RSVISPDP +  NEIG+P  FA +LTYPE VT  N 
Sbjct: 479  KQILEKKEGLFRMHMMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTSHNY 538

Query: 428  VKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKK---MRISIGRKLDTSRGAIVQPGKDS 484
             +L  ++ING + +PGA   ++  + M L   +K    R ++ ++L TS      PG   
Sbjct: 539  EELSKAVINGMDKYPGAA-AIENENGMVLSLKRKTLDQRKALAKQLMTS----TVPGAKG 593

Query: 485  DNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADF 544
            D    GK VYRHLQ GDVV++NRQPTLHKPS+M H  RVL  +KT+RMHYANC+TYNADF
Sbjct: 594  DT---GKKVYRHLQTGDVVVMNRQPTLHKPSMMGHRARVLTNQKTIRMHYANCNTYNADF 650

Query: 545  DGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLN 604
            DGDEMN+HFPQ+E++R EA  I + ++QY+  + G PLR LIQDHI      T +D F +
Sbjct: 651  DGDEMNMHFPQNELARTEALQIADTDHQYLSATAGKPLRGLIQDHISMGVQFTSRDVFFD 710

Query: 605  RDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITA 664
            R+++ QLLYS             +P     +    Q V    PAI KP+ LWTGKQVIT 
Sbjct: 711  REQYQQLLYSC-----------LRPEDYNTVYEKIQMV---EPAILKPKMLWTGKQVITT 756

Query: 665  VLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK--LSKTNKMHKDKSGK 722
            V+ +IT  R       G  L     K+  ++++  ++  ND  K  ++K + + +D    
Sbjct: 757  VMKNITPDR-----FHGLNLTS---KSSTSSEQWGEKASNDPKKWTVTKDSIVFRDT--- 805

Query: 723  KKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQFADY--GLVHTVQ 779
                                       E+++I+++ + + G++DK Q      GLVH+V 
Sbjct: 806  ---------------------------EQVVIFRDGEHLSGILDKNQLGPSAGGLVHSVH 838

Query: 780  ELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVH 839
            E+YG  TAG L+S L RL T +L    +TCG+DDL + ++ +R+R+  L  ++ +G  V 
Sbjct: 839  EIYGHITAGKLMSILGRLLTRYLNERAWTCGMDDLYLTEEGDRQRRQELSKAKRMGFEVA 898

Query: 840  LEALELE-DGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSE 898
             E + L+ +  E    +L   +E  +R   D  +   D    +++ K  + +V    L +
Sbjct: 899  AEYVTLDPNKIEDQSPQLVGRLENVLR--NDDQLNGLDQVYKAKV-KSITDNVSKFCLPK 955

Query: 899  GLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDW 958
            GL KP  +N +  MT SGAKGS VN   IS +LGQQ LEG+RVP MVSGKTLPSF  ++ 
Sbjct: 956  GLRKPFPRNQMQAMTISGAKGSSVNANLISCNLGQQVLEGRRVPVMVSGKTLPSFRAYET 1015

Query: 959  APRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISY 1018
             P AGG++  RFLTG+RPQEY+FH M+GREGL+DTAVKTS+SGYLQRC++K LE L+  Y
Sbjct: 1016 DPVAGGYVCGRFLTGIRPQEYFFHAMSGREGLIDTAVKTSKSGYLQRCIVKGLEGLRTEY 1075

Query: 1019 DYSVRD-ADGSIVQFCYGEDGVDVHQTSFISKFDALAAR----------ERGRGRGRNKF 1067
            D SVR+ ++G+++QF YGEDG+++ +   + +F  LA            E    R  N+ 
Sbjct: 1076 DTSVRESSNGNVIQFLYGEDGLEITKQKHLKEFTFLAENHQSVATLMKAEEVLSRIPNQG 1135

Query: 1068 CDKGSHTFVMGRNQ-------EMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSN 1120
                    +    +         ++   S     S ++   L   +K+N  K      +N
Sbjct: 1136 LADEQKAIIKSTKKGKAKDPLTALFTPASHFGSTSESFATALSAYIKENPHKLIRDKKTN 1195

Query: 1121 E---MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVT 1177
                ++K+ F  ++  K++ S+   GE VG++A+QSVGEPSTQMTLNTFHLAG    NVT
Sbjct: 1196 PGGIVSKKTFQSVMDLKYMKSIVDAGEAVGVVAAQSVGEPSTQMTLNTFHLAGHSAKNVT 1255

Query: 1178 LGIPRLQEILTIASKDIKTPVIT 1200
            LGIPRL+EI+  AS  I TP +T
Sbjct: 1256 LGIPRLREIIMTASAKIMTPTMT 1278


>gi|440295347|gb|ELP88260.1| DNA-directed RNA polymerase I subunit RPA1, putative [Entamoeba
            invadens IP1]
          Length = 1566

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1246 (35%), Positives = 659/1246 (52%), Gaps = 168/1246 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C+TCG  +  CPGHFGH +L  P+YNPL+F+ L  LL+ IC  C   KAS++ +     +
Sbjct: 69   CRTCGLNEDNCPGHFGHFELEEPMYNPLMFDQLILLLRSICLECFTLKASQQTLLGVAIE 128

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
            L  + K DI  A +++ +L  E+                V  R N    +    QE    
Sbjct: 129  LARLDKNDIGGALAIN-ELAEEAKK--------------VQMRANASRGKLKHEQENEEY 173

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGE 180
             +        + LKI   +C     K P       G+IH        +++ L+   +L +
Sbjct: 174  DYETDVNISNKLLKIFENECSKRIKKEP-------GYIHTEIQKRNVVKSFLMHMASLSQ 226

Query: 181  TFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSG 240
                 ++    G  S       + ++  F G  +TA             G   ++D    
Sbjct: 227  -----KKCPCCGKISPKIKKSDNKYSIWFYG--ETA-------------GVSTKEDGKKY 266

Query: 241  PLLPSDVKDIIEKLWEN---EFELCSFISDMQQQGFGKK----AGHSIFFLGVVLVPPIK 293
               PS + +I+++ WE    + E+ S +   Q +G  K       + +FF+  + +PP +
Sbjct: 267  DTTPSFIMNILKQAWEKDKVQKEVLSRLCYTQMRGGDKLDVILPSYHMFFVECLPIPPSR 326

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQ--ANIYLANAYVNQPDNAKVIVARWMNLQQSVNVL 351
            FR  ++ G+ + ++PQT     +++   N++L            +++    N+Q+  N L
Sbjct: 327  FRPLNRFGNMISDNPQTSYYKAIIENSQNLHLKRGKKEITLTENMLIE---NMQKGYNQL 383

Query: 352  FDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
               K+++    M + I   LE K GLFR  +MGKRVNYA R+VISPDP++  N  GIP  
Sbjct: 384  ILNKDSS----MPASIKTTLEHKVGLFRSNMMGKRVNYAARTVISPDPFIPTNTFGIPMP 439

Query: 412  FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIG-RKL 470
            FA+RL+    V   N  +++ +++NG    PGA    D+     L P+     S+  R+ 
Sbjct: 440  FAMRLSVATPVNERNFEEMKKAVVNGPMTWPGALSIEDEWGKTYLLPDDSDPYSVSKRQG 499

Query: 471  DTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTL 530
            +  R   V P    +     K V RH+ DGD++L NRQPTLHKP IM H V+VLK EKT+
Sbjct: 500  EADRLLAVDPTAPRN----FKTVRRHVIDGDMILTNRQPTLHKPGIMGHYVKVLKVEKTM 555

Query: 531  RMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHI 590
            RMHY+NC+T+NADFDGDEMN+H PQ  ++R+E  NI  ++ QYV P NG PLR LIQDHI
Sbjct: 556  RMHYSNCNTFNADFDGDEMNMHLPQSIIARSEIQNIALSDEQYVVPKNGQPLRGLIQDHI 615

Query: 591  VSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIW 650
            +S+ +LTK++TF NR++FCQ+     VS +  G           ++ S    LP  P I 
Sbjct: 616  ISSFMLTKRNTFFNREQFCQI-----VSDALYG-----------VNESYSISLPT-PTIL 658

Query: 651  KPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLS 710
            KP  LWTGKQV++A+L H+                                         
Sbjct: 659  KPTMLWTGKQVVSAILLHVG---------------------------------------- 678

Query: 711  KTNKMHKDKSGKKK----EVVEGKPGEEKEAEKNKSKEKELSEEK--------LLIYKND 758
             TN+ H + +GK K    E+ EG  G + E +K    +K+   EK         +I ++ 
Sbjct: 679  -TNQPHINFTGKCKVSTNEIGEG--GYQTEEQKKLRTQKDGFREKWDGANDSQCIIKESV 735

Query: 759  LVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLI 816
            L+ G +DK Q   ++ GL+H + ELY + TAG  LS  SRL T +LQ  G TC +DD ++
Sbjct: 736  LITGTLDKNQIGASNGGLIHCIYELYNAKTAGLCLSIFSRLLTNYLQRVGHTCSLDDCML 795

Query: 817  LKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFD 876
              + + +R   L+ + E+ +    +   L   ++ D     S   + +    D      D
Sbjct: 796  TPEFDAKRTELLNKANEVSRAATAKHFGLTGRSKFDIDVAFSNARRRVESAKD-----LD 850

Query: 877  MKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
              + S++N  TS  VI E +  G LK    N ++LMTT+GAKGSKVN  QI+  LGQQEL
Sbjct: 851  NAVKSEVNDCTSL-VIKECIPNGQLKAFPWNCLALMTTTGAKGSKVNHSQITCLLGQQEL 909

Query: 937  EGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVK 996
            EG+RVP M +GKTLPSF  +D + +AGGFI  RFLTG+ PQE+YFHCMAGREGL+DTAVK
Sbjct: 910  EGRRVPIMATGKTLPSFPRYDASAKAGGFIAARFLTGVPPQEFYFHCMAGREGLIDTAVK 969

Query: 997  TSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAAR 1056
            T+ SGYLQRC+IK +E L + YDY+VR++DGSIVQF YG+DG+DV +++F++  D  A  
Sbjct: 970  TANSGYLQRCIIKMMESLHVEYDYTVRESDGSIVQFMYGDDGIDVMKSAFLNNIDFWAKN 1029

Query: 1057 ERGRGRGRNKFCDKGS--HTFVMGRNQEM-IYKKCSGQLDASNAY--IMELPDALKDNAE 1111
             +       K+ D  S   +F  G  + M +++ CS   +  +    +    + L   +E
Sbjct: 1030 YKAI---VTKY-DTASIARSFKDGYKEAMKLHRDCSKHPEKHDPVLSVYSPGNNLAACSE 1085

Query: 1112 KFADKFLSNEMAKQD--------------FLKLVKHKFVLSLAQPGEPVGLLASQSVGEP 1157
            K+ +  L N+  K+D              F  ++  ++   L  PGEPVG++A QS+GEP
Sbjct: 1086 KYYN--LVNQYIKEDKNKDFKEGRLDEKKFRTMMMVRYNKCLVNPGEPVGIVAGQSIGEP 1143

Query: 1158 STQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            STQMTLNTFHLAGRG++NVTLG+PR++E++  A ++I TP +   L
Sbjct: 1144 STQMTLNTFHLAGRGDVNVTLGMPRMKELVMFAKRNISTPSMVLYL 1189


>gi|361125598|gb|EHK97632.1| putative DNA-directed RNA polymerase I subunit rpa1 [Glarea
            lozoyensis 74030]
          Length = 1558

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/1203 (38%), Positives = 625/1203 (51%), Gaps = 190/1203 (15%)

Query: 82   ESSNPEDSDVS-----NKSSCSMVTPRGNYDNVRNLK---PQEW-----TSLQFAEAK-L 127
            E SN ED+D S       SS   +    N    RN+K     +W      +   AEA+ +
Sbjct: 61   EVSNTEDADGSGGEDGQASSVEKLIRLRNAHVKRNIKVAKQNQWDWQREKNEAVAEARRV 120

Query: 128  ALLQFLKIETT--KCGNCKAKNPR-ISKPTFGWIHM-NGMPHADIRANL---------IR 174
             + +FLK  TT   C NCK  +P+  +K +   I   N +     R            I 
Sbjct: 121  TIKEFLKTITTGKTCSNCKDLSPKEKAKMSLANIQAKNAVTTLREREKRKADGDFDEGIA 180

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
              +L    S  +EE D G   DVD       +     T    AR  +    A P      
Sbjct: 181  DIDLSSNESNEDEEGD-GEDLDVDG------DVVMGDTATKTARSSKSKVAATPQ----- 228

Query: 235  KDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAG---HSIFFLGVVLVPP 291
              ++  P+   +VK  +  L+ENE E+ S + +   +   KKA      +FF+  +LVPP
Sbjct: 229  --IYCNPM---EVKAELILLFENEQEILSLVYN--SRSTVKKAAVVSPDMFFMQTLLVPP 281

Query: 292  IKFRLPSK-GGDSVMEHPQTVLLSKVLQANIYLANAY--VNQPDNAKVIVAR-------- 340
             KFR  +K G   + E+PQ  L   +L+  + ++  Y  VN          R        
Sbjct: 282  NKFRPEAKTGAGEITENPQNTLYKSILRGCLLVSQIYDEVNGLTEETPYRIRDFGDLQES 341

Query: 341  WMNLQQSVNVLFDG-----KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
            W  LQ +VN L D      + AAG+++   GI Q LEKKEGLFR+ +MGKRVN+A RSVI
Sbjct: 342  WAGLQDAVNSLIDRDRNPIQGAAGKKN-EDGIKQKLEKKEGLFRKNMMGKRVNFAARSVI 400

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDK----L 451
            SPDP +  NEIG+PP FA +LTYPE VT  N  +L+ ++ING +I PGA    ++    +
Sbjct: 401  SPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFKELQQAVINGPDIWPGAQAIENEHGQVI 460

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            S     P++++ ++           ++ P  +  N    K V+RHL +GDVVL+NRQPTL
Sbjct: 461  SLTIKTPDERLALA---------NQLLAPSNNRANGSRNKKVHRHLTNGDVVLMNRQPTL 511

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HKPS+M H  RVL GEKT+RMHYANC+TYNADFDGDEMN+HFPQ+EV+RAE   I + ++
Sbjct: 512  HKPSMMGHRARVLTGEKTIRMHYANCNTYNADFDGDEMNMHFPQNEVARAEVLQIADTDH 571

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
            QY+  + G PLR LIQDHI  +  +  +DTF +R  + QL+Y+S    SG          
Sbjct: 572  QYLAGTFGKPLRGLIQDHISVSVWMCSRDTFFDRATYQQLIYNSLRPESG---------- 621

Query: 632  RVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRP----PFVVERGGKLPQD 687
             ++  R E     + PAI KP+PLWTGKQVIT +L +I   +P    P  +     +P D
Sbjct: 622  HIVGDRIET----VTPAIIKPKPLWTGKQVITTILRNI---KPVDCAPLGLNSKPSVPGD 674

Query: 688  FFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKEL 747
                R+ +D   DR                                              
Sbjct: 675  ----RWGSDSNEDR---------------------------------------------- 684

Query: 748  SEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH 805
                +L    + + G++DKAQ      G +H + E+YG   AG  LS L RL T FL M 
Sbjct: 685  ----VLFKGGEFITGILDKAQIGPSGGGFIHAIHEVYGPTAAGKTLSILGRLLTKFLHMR 740

Query: 806  GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP-IKLKSEIEKAM 864
             FTCG+DDL +    E+ R++ L  +  +G  V  + + L+D    D   +L   +E  +
Sbjct: 741  AFTCGMDDLRLTPRGEQARRDTLKEAHRLGLEVASKYVSLQDQKPTDTDAELMERMEDVL 800

Query: 865  RGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNF 924
            R   D+     D+ M ++ + + SS +    L +GL+K   KN +  MT SGAKGS VN 
Sbjct: 801  R--DDSKQGGLDVMMNAR-SGNLSSQITKACLPDGLVKQFPKNQMQNMTVSGAKGSAVNA 857

Query: 925  QQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCM 984
              IS +LGQQ LEG+RVP MVSGK+LP F P++   RAGG+I++RFL+G+RPQEYYFH M
Sbjct: 858  NLISCNLGQQVLEGRRVPVMVSGKSLPCFRPYETNIRAGGYIVNRFLSGIRPQEYYFHAM 917

Query: 985  AGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT 1044
            AGREGL+DTAVKTSRSGYLQRCLIK +E LK+ YD SVRD+DGS+VQF YGEDG+DV + 
Sbjct: 918  AGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVEYDTSVRDSDGSMVQFLYGEDGLDVTKQ 977

Query: 1045 SFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPD 1104
              +  F  L           N         F     +E+I KK    L  S A     PD
Sbjct: 978  VHLQDFKFLLENITSELSQLNYGDPNYEQIF---SEKEIILKKMKKALKYSKANDPNGPD 1034

Query: 1105 ALKDN----------AEKFADKFLSNEMAKQD-FLKLVKH----------------KFVL 1137
             +  +          +EKF D   +   A  D  +K  +H                K++ 
Sbjct: 1035 PVLSSFNPGKYGYATSEKFYDALTNYLKANPDGMVKDKEHPDGVGVRKALEPVLMAKYLK 1094

Query: 1138 SLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTP 1197
            S+  PGE VG++A QSVGEPSTQMTLNTFHLAG    NVTLGIPRL+EI+  AS  I TP
Sbjct: 1095 SVVDPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHSTKNVTLGIPRLREIVMTASNHISTP 1154

Query: 1198 VIT 1200
             +T
Sbjct: 1155 SMT 1157


>gi|350629866|gb|EHA18239.1| DNA-directed RNA polymerase [Aspergillus niger ATCC 1015]
          Length = 1684

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/1282 (35%), Positives = 656/1282 (51%), Gaps = 169/1282 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q  + C GH GHI+L V VYN   F+ LY LLK  C +CH F+ SR  +     K
Sbjct: 67   CTTCRQTSWSCTGHPGHIELPVHVYNVTHFDQLYRLLKGQCVYCHRFQMSRTNINSYSCK 126

Query: 61   LELIIKGDIIAAKSLDL------DLPSESSNPEDSDVSNKSSCSMVTPRGNY-------- 106
            L L+  G +     +D       D    + + E S    +    ++  R +Y        
Sbjct: 127  LRLLHYGLVDELAVIDTIGGKGSDKKKTNKDGEGSSSEEEDDDDIIARRNSYVKKCIRQA 186

Query: 107  ---DNVRNLKPQEWTSLQFAEAKLALLQFLKI--ETTKCGNCKAKNPRISKPTFGWIHMN 161
                 +R L       L   + +  + +F K      KC +C   +P   K     I   
Sbjct: 187  QADGRLRGLMSGSKNPLAAEQRRALVREFFKDIGAVKKCASCSGLSPSYRKDRSSKIFRK 246

Query: 162  GMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQ 221
             +P          G  +  +    ++ K L +          S N +       A     
Sbjct: 247  ALPEKSRLTMTQAGFQIPNSLVLLQQAKKLTSKEKAALANGVSDNVSTTSETHGAEEEVA 306

Query: 222  KGSGAVPSG-FKKQKDLFSGPLLPS-DVKDIIEKLWENEFELCSFISDMQQQGFGKKAGH 279
            +G+  V     +KQ    +   +PS +V   +  L+E E E+ S + +   +   KK   
Sbjct: 307  RGNAIVAQAESRKQTVGETQQFMPSPEVHAAMTLLFEKEQEILSLVYN--SRPLPKKESQ 364

Query: 280  ---SIFFLGVVLVPPIKFRLPS-KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNA- 334
                +FF+  +LVPP KFR  + +G   +ME  Q    + +L+ N  + N    +  +A 
Sbjct: 365  VSADMFFIKNILVPPNKFRPAAPQGPGEIMEAQQNQSFTAILK-NCDIINQISKERQSAG 423

Query: 335  ----------KVIVARWMNLQQSVNVLFDGK--NAAGQRDMAS--GICQLLEKKEGLFRQ 380
                      + ++   + LQ +VN+L D    N +G    A+  GI Q LEKKEGLFR+
Sbjct: 424  ADSTTRVRDYRDLLHSIVTLQDTVNMLIDRDRGNLSGPAAAAAPMGIKQYLEKKEGLFRK 483

Query: 381  KLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEI 440
             +MGKRVN+A RSVISPDP +  NEIG+P  FA +LTYPE VT  N  +++ ++ING + 
Sbjct: 484  NMMGKRVNFAARSVISPDPNIETNEIGVPMVFAKKLTYPEPVTNHNFWEMKQAVINGPDK 543

Query: 441  HPGAT---HYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG---KMVY 494
            +PGA+   +   +++ +R            + LD       Q    S+   +G   K VY
Sbjct: 544  YPGASAIENEFGQVTNLRF-----------KSLDERTALANQLLAPSNWRMKGSRNKKVY 592

Query: 495  RHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFP 554
            RHL  GD+VL+NRQPTLHKPSIM H  RVL  E+T+RMHYANC+TYNADFDGDEMN+HFP
Sbjct: 593  RHLTTGDIVLMNRQPTLHKPSIMGHKARVLPNERTIRMHYANCNTYNADFDGDEMNMHFP 652

Query: 555  QDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYS 614
            Q+E++R+EA  + +A++QY+  ++G PLR LIQDHI      T +D+F + +E+ QLLYS
Sbjct: 653  QNELARSEAMMLADADHQYLVATSGKPLRGLIQDHISMGTWFTCRDSFFDEEEYYQLLYS 712

Query: 615  SGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRP 674
                         +P     I+   Q V    P + +P+ LWTGKQ+I+ +L +I     
Sbjct: 713  -----------CLRPENSHTITDRIQTV---GPTVIRPKRLWTGKQIISTILKNI----- 753

Query: 675  PFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEE 734
                                                    M  D++G   +     PG+ 
Sbjct: 754  ----------------------------------------MPSDRAGLNLKSKSSTPGD- 772

Query: 735  KEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLL 791
                    +  E +EE  +I+K+ +++ G++DK Q      GL+  + E+YG   AG L+
Sbjct: 773  --------RWGEGNEEGEVIFKDGEMLCGILDKKQIGPTAGGLIDAIHEIYGHTIAGRLI 824

Query: 792  SALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEI 851
            S L RL T +L M  FTCG+DDL +  + +R RK  +  +  IG+ V L+ + L+     
Sbjct: 825  SILGRLLTRYLNMRAFTCGIDDLRLTPEGDRVRKEKISEAAAIGREVALKYVTLDQTTVP 884

Query: 852  DP-IKLKSEIEKAMR-----GGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTG 905
            D   +L+  +E+ +R     GG D+       K+++++ K          L +GL+KP  
Sbjct: 885  DQDAELRRRMEEVLRDDEKQGGLDSVSNARTAKLSTEITK--------ACLPKGLVKPFP 936

Query: 906  KNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGF 965
             N +  MT SGAKGS VN   IS +LGQQ LEG+RVP MVSGKTLPSF  +D  P AGG+
Sbjct: 937  WNQMQSMTISGAKGSSVNANLISCNLGQQVLEGRRVPVMVSGKTLPSFRAFDTNPMAGGY 996

Query: 966  IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDA 1025
            +  RFLTG++PQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E LK  YD SVR+A
Sbjct: 997  VCGRFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDSSVREA 1056

Query: 1026 -DGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRN---KFCDKGSHTFVMGRNQ 1081
             DGSIVQF YGEDG+D+ +   +  FD LA+         N    F +            
Sbjct: 1057 TDGSIVQFLYGEDGLDITKQVHLKDFDFLASNYVSIMSQVNLTSDFHNLEKEEVANWHKD 1116

Query: 1082 EMIYKKCSGQLDASNAYIM---------ELPDALKDNAEKFAD-----------KFLSNE 1121
             M   + +G++DA +  +           + ++     +K+ D           K ++  
Sbjct: 1117 AMKKVRKTGKVDAMDPVLSLYHPGGNLGSISESFSQALKKYEDANPDKLLKDKKKDVNGI 1176

Query: 1122 MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIP 1181
            ++K+ F  L+  K++ S+ +PGE +G++A QS+GEPSTQMTLNTFHLAG    NVTLGIP
Sbjct: 1177 ISKKAFNTLMNMKYMKSVVEPGEAIGIVAGQSIGEPSTQMTLNTFHLAGHSAKNVTLGIP 1236

Query: 1182 RLQEILTIASKDIKTPVITCPL 1203
            RL+EI+  AS  I TP +T  L
Sbjct: 1237 RLREIVMTASAHIMTPTMTLIL 1258


>gi|145240347|ref|XP_001392820.1| DNA-directed RNA polymerase i [Aspergillus niger CBS 513.88]
 gi|134077337|emb|CAK39952.1| unnamed protein product [Aspergillus niger]
          Length = 1680

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/1282 (35%), Positives = 656/1282 (51%), Gaps = 169/1282 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q  + C GH GHI+L V VYN   F+ LY LLK  C +CH F+ SR  +     K
Sbjct: 63   CTTCRQTSWSCTGHPGHIELPVHVYNVTHFDQLYRLLKGQCVYCHRFQMSRTNINSYSCK 122

Query: 61   LELIIKGDIIAAKSLDL------DLPSESSNPEDSDVSNKSSCSMVTPRGNY-------- 106
            L L+  G +     +D       D    + + E S    +    ++  R +Y        
Sbjct: 123  LRLLHYGLVDELAVIDTIGGKGSDKKKTNKDGEGSSSEEEDDDDIIARRNSYVKKCIRQA 182

Query: 107  ---DNVRNLKPQEWTSLQFAEAKLALLQFLKI--ETTKCGNCKAKNPRISKPTFGWIHMN 161
                 +R L       L   + +  + +F K      KC +C   +P   K     I   
Sbjct: 183  QADGRLRGLMSGSKNPLAAEQRRALVREFFKDIGAVKKCASCSGLSPSYRKDRSSKIFRK 242

Query: 162  GMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQ 221
             +P          G  +  +    ++ K L +          S N +       A     
Sbjct: 243  ALPEKSRLTMTQAGFQIPNSLVLLQQAKKLTSKEKAALANGVSDNVSTTSETHGAEEEVA 302

Query: 222  KGSGAVPSG-FKKQKDLFSGPLLPS-DVKDIIEKLWENEFELCSFISDMQQQGFGKKAGH 279
            +G+  V     +KQ    +   +PS +V   +  L+E E E+ S + +   +   KK   
Sbjct: 303  RGNAIVAQAESRKQTVGETQQFMPSPEVHAAMTLLFEKEQEILSLVYN--SRPLPKKESQ 360

Query: 280  ---SIFFLGVVLVPPIKFRLPS-KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNA- 334
                +FF+  +LVPP KFR  + +G   +ME  Q    + +L+ N  + N    +  +A 
Sbjct: 361  VSADMFFIKNILVPPNKFRPAAPQGPGEIMEAQQNQSFTAILK-NCDIINQISKERQSAG 419

Query: 335  ----------KVIVARWMNLQQSVNVLFDGK--NAAGQRDMAS--GICQLLEKKEGLFRQ 380
                      + ++   + LQ +VN+L D    N +G    A+  GI Q LEKKEGLFR+
Sbjct: 420  ADSTTRVRDYRDLLHSIVTLQDTVNMLIDRDRGNLSGPAAAAAPMGIKQYLEKKEGLFRK 479

Query: 381  KLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEI 440
             +MGKRVN+A RSVISPDP +  NEIG+P  FA +LTYPE VT  N  +++ ++ING + 
Sbjct: 480  NMMGKRVNFAARSVISPDPNIETNEIGVPMVFAKKLTYPEPVTNHNFWEMKQAVINGPDK 539

Query: 441  HPGAT---HYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG---KMVY 494
            +PGA+   +   +++ +R            + LD       Q    S+   +G   K VY
Sbjct: 540  YPGASAIENEFGQVTNLRF-----------KSLDERTALANQLLAPSNWRMKGSRNKKVY 588

Query: 495  RHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFP 554
            RHL  GD+VL+NRQPTLHKPSIM H  RVL  E+T+RMHYANC+TYNADFDGDEMN+HFP
Sbjct: 589  RHLTTGDIVLMNRQPTLHKPSIMGHKARVLPNERTIRMHYANCNTYNADFDGDEMNMHFP 648

Query: 555  QDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYS 614
            Q+E++R+EA  + +A++QY+  ++G PLR LIQDHI      T +D+F + +E+ QLLYS
Sbjct: 649  QNELARSEAMMLADADHQYLVATSGKPLRGLIQDHISMGTWFTCRDSFFDEEEYYQLLYS 708

Query: 615  SGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRP 674
                         +P     I+   Q V    P + +P+ LWTGKQ+I+ +L +I     
Sbjct: 709  -----------CLRPENSHTITDRIQTV---GPTVIRPKRLWTGKQIISTILKNI----- 749

Query: 675  PFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEE 734
                                                    M  D++G   +     PG+ 
Sbjct: 750  ----------------------------------------MPSDRAGLNLKSKSSTPGD- 768

Query: 735  KEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLL 791
                    +  E +EE  +I+K+ +++ G++DK Q      GL+  + E+YG   AG L+
Sbjct: 769  --------RWGEGNEEGEVIFKDGEMLCGILDKKQIGPTAGGLIDAIHEIYGHTIAGRLI 820

Query: 792  SALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEI 851
            S L RL T +L M  FTCG+DDL +  + +R RK  +  +  IG+ V L+ + L+     
Sbjct: 821  SILGRLLTRYLNMRAFTCGIDDLRLTPEGDRVRKEKISEAAAIGREVALKYVTLDQTTVP 880

Query: 852  DP-IKLKSEIEKAMR-----GGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTG 905
            D   +L+  +E+ +R     GG D+       K+++++ K          L +GL+KP  
Sbjct: 881  DQDAELRRRMEEVLRDDEKQGGLDSVSNARTAKLSTEITK--------ACLPKGLVKPFP 932

Query: 906  KNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGF 965
             N +  MT SGAKGS VN   IS +LGQQ LEG+RVP MVSGKTLPSF  +D  P AGG+
Sbjct: 933  WNQMQSMTISGAKGSSVNANLISCNLGQQVLEGRRVPVMVSGKTLPSFRAFDTNPMAGGY 992

Query: 966  IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDA 1025
            +  RFLTG++PQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E LK  YD SVR+A
Sbjct: 993  VCGRFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDSSVREA 1052

Query: 1026 -DGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRN---KFCDKGSHTFVMGRNQ 1081
             DGSIVQF YGEDG+D+ +   +  FD LA+         N    F +            
Sbjct: 1053 TDGSIVQFLYGEDGLDITKQVHLKDFDFLASNYVSIMSQVNLTSDFHNLEKEEVANWHKD 1112

Query: 1082 EMIYKKCSGQLDASNAYIM---------ELPDALKDNAEKFAD-----------KFLSNE 1121
             M   + +G++DA +  +           + ++     +K+ D           K ++  
Sbjct: 1113 AMKKVRKTGKVDAMDPVLSLYHPGGNLGSISESFSQALKKYEDANPDKLLKDKKKDVNGI 1172

Query: 1122 MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIP 1181
            ++K+ F  L+  K++ S+ +PGE +G++A QS+GEPSTQMTLNTFHLAG    NVTLGIP
Sbjct: 1173 ISKKAFNTLMNMKYMKSVVEPGEAIGIVAGQSIGEPSTQMTLNTFHLAGHSAKNVTLGIP 1232

Query: 1182 RLQEILTIASKDIKTPVITCPL 1203
            RL+EI+  AS  I TP +T  L
Sbjct: 1233 RLREIVMTASAHIMTPTMTLIL 1254


>gi|255941530|ref|XP_002561534.1| Pc16g12350 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586157|emb|CAP93905.1| Pc16g12350 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1671

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/1271 (35%), Positives = 654/1271 (51%), Gaps = 165/1271 (12%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q  F C GH GHI+L VP YN   F+ ++ LL+  C +C   +  R +V     K
Sbjct: 63   CTTCRQNSFTCTGHPGHIELPVPFYNVTFFDHIFRLLRAQCVYCLRLQMGRNQVNMYTCK 122

Query: 61   LELIIKG--------DIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNL 112
            L L+  G        D + A        ++    +  D  +      +  R +Y   R  
Sbjct: 123  LRLLQYGLVDEVAVVDAMGAVKGAKSKATKGKEDDSDDSDDPDDDDYMQKRADYVTRRIR 182

Query: 113  KPQEWTSLQ----------FAEAKLALLQ--FLKIET-TKCGNCKAKNPRISKPTFGWIH 159
            + ++   L            AEA+  L++  F  I    KC  C   +P   K  +  I 
Sbjct: 183  EAKKEGKLDGLMPGGQNPIAAEARRELIKAFFKDINGFKKCVGCSGVSPSYKKDRYNKIF 242

Query: 160  MNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARR 219
               +P     A L  G     T    E+E++  A S     E H            A   
Sbjct: 243  RKQLPEKQKLAMLQGGFQAPNTMVLLEQERN--AKSKNTVSEVHG-----------AEEE 289

Query: 220  HQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKA-G 278
             ++G   V          F   +  S+V   +  L++ E E+   + + +    G KA  
Sbjct: 290  IRRGVAVVQEAQGSTGQEF---MSSSEVYGALHLLFQKESEILQLVYNSRPVPKGVKAIS 346

Query: 279  HSIFFLGVVLVPPIKFR-LPSKGGDSVMEHPQTVLLSKVLQA--NIYLANAYVNQPDNAK 335
               FF+  +LVPP K+R    +G  +VME  Q    + +L+    I   +  +   +   
Sbjct: 347  ADTFFIKSILVPPNKYRPAVQQGAGTVMEAQQNTSFNAILKGCDTINQISKEIQNEEEKT 406

Query: 336  VIVAR-WMNLQQSVNVLFDGKNAAGQRDMAS-----------GICQLLEKKEGLFRQKLM 383
            +  AR + +L Q++  L D  N    RD  S           GI Q+LEKKEGLFR+ +M
Sbjct: 407  MSRARNYSDLLQAIVQLQDVVNGLIDRDRTSVTGSAALSQPNGIKQILEKKEGLFRKNMM 466

Query: 384  GKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPG 443
            GKRVN+A RSVISPDP +  NEIG+P  FA +LT+PE VT  N  +L++++ING + +PG
Sbjct: 467  GKRVNFAARSVISPDPNIEPNEIGVPLVFAKKLTFPEPVTNHNFWELKEAVINGPDKYPG 526

Query: 444  ATHYLD---KLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDG 500
            A+   +   ++  ++   N + R ++  +L       + P          K VYRHL  G
Sbjct: 527  ASSIENENGQVINLKFK-NLEERTALANQL-------LAPSNWRQKGSRNKKVYRHLTTG 578

Query: 501  DVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSR 560
            D VL+NRQPTLHKPSIM H  RVL  E+ +RMHYANC+TYNADFDGDEMN+HFPQ+E+++
Sbjct: 579  DYVLMNRQPTLHKPSIMGHKARVLPNERVIRMHYANCNTYNADFDGDEMNMHFPQNELAQ 638

Query: 561  AEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSS 620
            AEA  + +A++QY+  ++G PLR LIQDHI     +T +D+F + +++ QLLYS      
Sbjct: 639  AEARMLADADHQYLVATSGKPLRGLIQDHISMGTWVTCRDSFYDEEDYHQLLYS------ 692

Query: 621  GLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVER 680
                   +P    ++S   Q V P   A+ KP+ LWTGKQ+IT +L +I   +PP   ER
Sbjct: 693  -----CLRPEHSHIVSDRIQLVEP---AMRKPKCLWTGKQIITTILKNI---QPP---ER 738

Query: 681  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
            GG                          L   +    ++ GK  E               
Sbjct: 739  GGL------------------------TLKSKSSTPGERWGKGNE--------------- 759

Query: 741  KSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLF 798
                    E++++    + + G++DK Q      GL+  V E+YG +TAG L+  L RL 
Sbjct: 760  --------EDEVIFQDGEYLCGILDKKQLGPTAGGLIDAVHEVYGYSTAGKLIGILGRLL 811

Query: 799  TVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKS 858
            T  L + GF+CG+DDL + K+ +R RK  L  + ++G+ V L+ + L+        +L  
Sbjct: 812  TRVLNLRGFSCGIDDLRLTKEGDRIRKEKLATAPQMGREVALKYVTLDQVPGDQTAELNR 871

Query: 859  EIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAK 918
             +E+ +R   D   +  D  +++  +   SS + +  L  GL KP   N +  MT SGAK
Sbjct: 872  RLEEVLRD--DDKQSGLD-SVSNARSAKLSSEITSACLPSGLAKPFPWNQMQSMTISGAK 928

Query: 919  GSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQE 978
            GS VN   IS +LGQQ LEG+RVP M+SGKTLPSF  ++  P AGG++  RFLTG++PQE
Sbjct: 929  GSGVNANLISCNLGQQVLEGRRVPLMISGKTLPSFKAFETHPMAGGYVSGRFLTGIKPQE 988

Query: 979  YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDA-DGSIVQFCYGED 1037
            YYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E LK  YD SVR+A DGS+VQF YGED
Sbjct: 989  YYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDSSVREASDGSVVQFLYGED 1048

Query: 1038 GVDVHQTSFISKFDALAAR-----ERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQL 1092
            G+D+ +   ++ FD LA       ++ +    +K   +   T+       M   + +G++
Sbjct: 1049 GLDITKQVHLNDFDFLAQNHISISKQVQADDYHKLAKEDVTTW---HKDAMKAVRKTGKI 1105

Query: 1093 DASNAYIMELP---------DALKDNAEKFAD-----------KFLSNEMAKQDFLKLVK 1132
            DA +  +   P         +A     +K+AD           K +  ++ K+ F  L+ 
Sbjct: 1106 DAVDPVLSHFPPGGNLGSTSEAFAQELKKYADVNKNKLIKDKKKNIEGKVTKKTFEALMN 1165

Query: 1133 HKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASK 1192
             K++ S+  PGE VG++A QSVGEPSTQMTLNTFHLAG    NVTLGIPRL+EI+  AS 
Sbjct: 1166 MKYMKSIIDPGEAVGIMAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASA 1225

Query: 1193 DIKTPVITCPL 1203
             I TP +T  L
Sbjct: 1226 KIMTPTMTLLL 1236


>gi|170090758|ref|XP_001876601.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648094|gb|EDR12337.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1711

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1047 (40%), Positives = 584/1047 (55%), Gaps = 182/1047 (17%)

Query: 244  PSDVKDIIEKLWENEFELCSFISDMQQQGFGKK-------------AGHSIFFLGVVLVP 290
            P + +  + +L+ NE  +CS +       FG+              A   +FFL V+ V 
Sbjct: 328  PEECRAHLRRLFHNEAMMCSLL-------FGRHGPFAPISKDQLSFASADMFFLEVIPVA 380

Query: 291  PIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYV----------NQPDNAK----- 335
            P +FR P+K G+ + EHPQ  LLSKVL  +  + +  +          N  + A+     
Sbjct: 381  PTRFRPPAKLGEVLFEHPQNELLSKVLNTSYRMRDLSLDLRAASQKTGNVDEGARKTLMS 440

Query: 336  VIVARWMNLQQSVNVLFDG-KNAAGQRDM---ASGICQLLEKKEGLFRQKLMGKRVNYAC 391
             ++ R + LQ  VN   D  KN A  R      +G+ Q LEKKEGLFR+ +MGKRVNYA 
Sbjct: 441  ALLDRLVQLQVDVNSFMDSSKNPAPVRQSKLPPAGVKQGLEKKEGLFRKHMMGKRVNYAA 500

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGAT------ 445
            RSVISPD  +  NEIGIPP FA +LT+PE VTP N  +LR  +I G   +PGAT      
Sbjct: 501  RSVISPDVNIEPNEIGIPPVFARKLTFPEPVTPANFHELRQRVITGPHGYPGATLVEYED 560

Query: 446  ---HYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKD---SDNEFEGKMVYRHLQD 499
                 LDKL+        + R +I  +L T +      G+    +      K VYRHL+D
Sbjct: 561  GHQQSLDKLTV-------EQRTAIANQLLTPQEGDRGSGRRGLYTRTTAMNKKVYRHLRD 613

Query: 500  GDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGD-EMNVHFPQDEV 558
            GD++++NRQPTLHKPS+MAH  RVL GEKT+RMHYANC++YN +F    +MN+HFPQ+ V
Sbjct: 614  GDILILNRQPTLHKPSMMAHKARVLTGEKTIRMHYANCNSYNGEFMAILQMNIHFPQNHV 673

Query: 559  SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
            +RAEA  I N +NQY+ P++G+PLR LIQDH+V+   +T +D F  R+E+CQLLY +   
Sbjct: 674  ARAEAMMIANTDNQYLVPTSGNPLRGLIQDHVVAGVWMTCQDAFFTREEYCQLLYGA--- 730

Query: 619  SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVV 678
                     +P +    +R    ++ L P IWKP+P+WTGKQ+I+ VL +IT        
Sbjct: 731  --------LRPEEESRGAR----LVTLPPTIWKPKPMWTGKQIISTVLKNIT-------- 770

Query: 679  ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 738
                  P+ F     NA          K K+                     PG    A+
Sbjct: 771  ------PKPFEGLSLNA----------KTKV---------------------PGYLWGAD 793

Query: 739  KNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSR 796
                      E++++    +L+ GV+DKA F   DYGLVH+V ELYG++ AG LL  LSR
Sbjct: 794  SK--------EDQVVFMDGELLCGVLDKAAFGATDYGLVHSVYELYGADVAGRLLGVLSR 845

Query: 797  LFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL-------ELEDGA 849
            LFT FLQ   FTC +DDL++  + + +R + +   E +G    +E         +LE  A
Sbjct: 846  LFTKFLQHRAFTCRMDDLILTPEGDGKRNDLIKRGENLGTEGAIENFPSLSSTPKLEIAA 905

Query: 850  EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWI 909
            E     L + +E  +R   D  +A  D+ + ++L+K T SS+ +  L  GLL+    N +
Sbjct: 906  E-----LTTLLEDVLR--DDNKMAGLDVTVKTKLSKLT-SSISDICLPNGLLRKFPFNHM 957

Query: 910  SLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDR 969
              MT SGAKGS VN +QIS  LGQQELEG+RVP MVSGKTLPSF  ++    AGG+++ R
Sbjct: 958  QTMTLSGAKGSAVNARQISCALGQQELEGRRVPVMVSGKTLPSFKAFETKAIAGGYVVSR 1017

Query: 970  FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSI 1029
            FLTG++PQE+YFHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE +++ YD++VR +D SI
Sbjct: 1018 FLTGIKPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIRVHYDHTVRGSDNSI 1077

Query: 1030 VQFCYGEDGVDV------HQTSFISKFDALAARERGRGRGRNKFCDKGSHTF---VMGRN 1080
             QF YG DG+DV      +Q  FI +     AR       +N   +  + ++   V+ R+
Sbjct: 1078 YQFAYGGDGLDVTRQKHLYQFGFIVQNQISLARHIRPADIQNVVDESTAISYMKKVLKRS 1137

Query: 1081 QEMIYKKCSGQLD------------------------ASNAYIMELPDAL---KDNAEKF 1113
             +   K    + D                        A + Y+   P  L   K++  +F
Sbjct: 1138 PDRPDKNKPAKRDKYDPALSLYSPSRYLGSTSEQFAIAVDNYVKTNPHNLLAEKEDEVRF 1197

Query: 1114 ADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGE 1173
              +  +  +  ++F  L+  K++ SL  PGE VGLLASQ VGEPSTQMTLNTFH AG G 
Sbjct: 1198 KSR--TPPLHPRNFRLLMNVKYMKSLVDPGEAVGLLASQGVGEPSTQMTLNTFHFAGHGA 1255

Query: 1174 MNVTLGIPRLQEILTIASKDIKTPVIT 1200
             NVTLGIPRL+EI+  AS+  KTP +T
Sbjct: 1256 ANVTLGIPRLREIVMTASQKPKTPSMT 1282



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 48/76 (63%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    F CPGHFGHI+L  PV++PL    +Y LL+  C FCH FK +R  + K + K
Sbjct: 63  CATCHLTYFTCPGHFGHIELPAPVFHPLFMTNMYNLLRGTCMFCHRFKMTRTVLWKFMAK 122

Query: 61  LELIIKGDIIAAKSLD 76
           L L+ +G + AA+ +D
Sbjct: 123 LRLLERGLLDAAQGVD 138


>gi|121701207|ref|XP_001268868.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Aspergillus
            clavatus NRRL 1]
 gi|119397011|gb|EAW07442.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Aspergillus
            clavatus NRRL 1]
          Length = 1734

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/1284 (36%), Positives = 663/1284 (51%), Gaps = 174/1284 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCV-- 58
            C TC Q  + C GH GHI+L V VYN   F+ L+ LL+  C +CH F+  R +V   V  
Sbjct: 116  CATCRQNAWSCTGHPGHIELPVHVYNVTFFDQLFRLLRAQCVYCHRFQMPRVQVNAYVCK 175

Query: 59   -RKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCS---MVTPRGNY-------- 106
             R L+  +  ++   +S+     S+    +D+D S         +V  R  Y        
Sbjct: 176  LRLLQYGLVDEVGVIESMGTGSGSKKKAAKDADDSGSEDEDDEDLVARRNAYVKKVIREA 235

Query: 107  ---DNVRNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISKPTFGWIHMN 161
                 + ++       +   + +  + QF K  +   KC +C   +P   +     I   
Sbjct: 236  HAAGRLNDILSGAKNPMATEQRRDLVKQFFKDLVAIKKCSSCSGISPAYRRDRSSKIFRK 295

Query: 162  GMPHADIRANLIRGCNLGETFSGGEEEKDL----------GASSDVDA-PETHSFNGTFP 210
             +P     A +  G     +    ++ K L          G S    A  ETH       
Sbjct: 296  PLPEKSRLAMVQAGFQAPNSLILLQQAKKLNMKEKEAMANGVSDSASATSETH------- 348

Query: 211  GTQDTAARRHQKGSGAVPSGFKK-QKDLFSGPLLPS-DVKDIIEKLWENEFELCSFISDM 268
            G ++  AR    G+  V     K Q D   G  +PS +V   I  L+E E ++ + I + 
Sbjct: 349  GAEEEVAR----GNAVVAMAENKDQADGDGGQYMPSPEVHAAIILLFEKEKDILNLIYN- 403

Query: 269  QQQGFGKKAGH---SIFFLGVVLVPPIKFRLPS-KGGDSVMEHPQTVLLSKVLQANIYLA 324
              +   KK      ++FF+  +LVPP K+R  + +G   +ME  Q   L+++L+ N  + 
Sbjct: 404  -SRPLPKKESQVSANMFFIKNILVPPNKYRPAAPQGPGEIMEAQQNTPLTQILK-NCDII 461

Query: 325  NAYVNQPDNA-----------KVIVARWMNLQQSVNVLFDGKNAAGQRDMA---SGICQL 370
            N    +  NA           + ++   + LQ +VN L D +  A         +GI Q+
Sbjct: 462  NQISKERQNAGADSVTRMRDYRDLLHAIVQLQDTVNSLIDSERGASGASAGQAANGIKQI 521

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            LEKKEGLFR+ +MGKRVN+A RSVISPDP +  NEIG+P  FA +LTYPE VT  N  ++
Sbjct: 522  LEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEM 581

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
            + ++ING + +PGAT   ++L  +    N K +      LD       Q    S+   +G
Sbjct: 582  KQAVINGPDKYPGATAIENELGQV---TNLKFK-----SLDERTALANQLLAPSNWRMKG 633

Query: 491  ---KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGD 547
               K VYRHL  GDVVL+NRQPTLHKPSIM H  RVL  E+ +RMHYANC+TYNADFDGD
Sbjct: 634  SRNKKVYRHLTTGDVVLMNRQPTLHKPSIMGHKARVLANERVIRMHYANCNTYNADFDGD 693

Query: 548  EMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDE 607
            EMN+HFPQ+E++RAEA  + +A++QY+  ++G PLR LIQDHI      T +DTF N ++
Sbjct: 694  EMNMHFPQNELARAEAMMLADADHQYLVATSGKPLRGLIQDHISMGTWFTCRDTFFNEED 753

Query: 608  FCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLN 667
            + +LLYS             +P     I+   Q V    P + KP  LWTGKQVIT +L 
Sbjct: 754  YYELLYS-----------CLRPENSHTITERIQLV---EPTVLKPTRLWTGKQVITTILK 799

Query: 668  HITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVV 727
            +I    PP                                           ++G   +  
Sbjct: 800  NIM---PP------------------------------------------GRAGLNLKSK 814

Query: 728  EGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQFADY--GLVHTVQELYGS 784
               PG+         +  E +EE  +I+K+ +++ G++DK Q      GLV  + E+YG 
Sbjct: 815  SSTPGD---------RWGEGNEEGSVIFKDGEMLCGILDKKQIGPTAGGLVDAIHEIYGH 865

Query: 785  NTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALE 844
              AG L+S L RL T +L M  FTCG+DDL + K+ ++ RK  +  +   G+ V L+ + 
Sbjct: 866  TIAGRLISILGRLLTRYLNMRAFTCGIDDLRLTKEGDQVRKQIISQAASAGRDVALKYVT 925

Query: 845  LEDGAEIDP-IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKP 903
            L+     D   +L+  +E  +R   D   +  D    +Q+ K  S+ +    L +GL KP
Sbjct: 926  LDQTTVPDQDTELRRRLEDVLR--DDDKQSGLDSVSNAQMAK-LSTEITKACLPKGLAKP 982

Query: 904  TGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAG 963
               N +  MT SGAKGS VN   IS +LGQQ LEG+RVP M+SGKTLPSF  +D  P AG
Sbjct: 983  FPWNQMQSMTISGAKGSGVNANLISCNLGQQVLEGRRVPVMISGKTLPSFRAFDTHPMAG 1042

Query: 964  GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
            GF+  RFLTG++PQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E L+  YD SVR
Sbjct: 1043 GFVCGRFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRAEYDTSVR 1102

Query: 1024 D-ADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGS--HTFVMGRN 1080
            + +DGSI+QF YGEDG+D+ +   +  FD L +         N   D  S     V   +
Sbjct: 1103 ESSDGSIIQFLYGEDGLDITKQVHLKDFDFLTSNYVSIMSSVNLTSDFHSLEKEEVTNWH 1162

Query: 1081 QEMIYK-KCSGQLDASNAYIME-------------LPDALKDNAEKFADKFLSNE----- 1121
            ++ + K + SG++DA +  +                  ALK   +   DK L ++     
Sbjct: 1163 KDAMKKVRKSGKVDAMDPVLSRYHPGGNLGSTSEAFSQALKKYEDINPDKLLRDKKKQID 1222

Query: 1122 --MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
              ++K+ F  L+  K++ S+  PGE VG++A QS+GEPSTQMTLNTFHLAG    NVTLG
Sbjct: 1223 GLISKKAFNTLMNMKYLKSVVDPGEAVGIVAGQSIGEPSTQMTLNTFHLAGHSAKNVTLG 1282

Query: 1180 IPRLQEILTIASKDIKTPVITCPL 1203
            IPRL+EI+  AS  I TP +T  L
Sbjct: 1283 IPRLREIVMTASAHIMTPTMTLIL 1306


>gi|242774376|ref|XP_002478429.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Talaromyces
            stipitatus ATCC 10500]
 gi|218722048|gb|EED21466.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Talaromyces
            stipitatus ATCC 10500]
          Length = 1689

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/1272 (35%), Positives = 655/1272 (51%), Gaps = 160/1272 (12%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC    + CPGH GHI+L VP++N   F+ +Y LL+  C FCH  + +R E+     K
Sbjct: 63   CTTCRASSWSCPGHPGHIELPVPIWNVTFFDQMYRLLRAKCDFCHRLRIARVEINAYACK 122

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTP---RGNYDN--VRNLKPQ 115
            L L+  G  +  ++ ++D   E       D     +    T    R  +    +R  + Q
Sbjct: 123  LRLLQYG--LVDQTAEIDKIGEYGQDAAVDADENGNVDPQTKMELRNKFVRKCIREAQKQ 180

Query: 116  EWTSLQF--------AEAKLALLQFLKIETTK---CGNCKAKNPRISKPTFGWIHMNGMP 164
              +   F        AE +  L++    E  K   C +C   +P   K  +  I    M 
Sbjct: 181  GDSGAFFGGAKNPVAAEQRRELIKEFFKELAKGKICKSCHYVSPGYRKDRYAKIFRKAMS 240

Query: 165  HADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAP-ETHSFNGT-------FPGTQDTA 216
              D  A  + G          EEEK L     ++ P E    NGT         G ++  
Sbjct: 241  TKDKVAMTMAGMTAPNPVIVLEEEKKL-----LNKPKEQDKQNGTAIREVTELHGAEEEV 295

Query: 217  ARRHQKGS-GAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGK 275
             R +   S G++  G +  +   S P    +V   I  L+E E E+ + +   +    G 
Sbjct: 296  VRANAAISQGSIAGGQEGGQQFVSSP----EVYAAICLLFEKEKEILNLVYSSR---LGF 348

Query: 276  KAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQA----NIYLANAYVNQP 331
            K    + F+  +LVPP +FR P++ G  +ME  Q    +++L+     N+   +    + 
Sbjct: 349  KISPDMLFVRNILVPPNRFRPPAQQGGQIMEAQQNTPFTQILKTCDLINMISHSRQTAET 408

Query: 332  DNAKV-----IVARWMNLQQSVNVLFD---GKNAAGQRDMASGICQLLEKKEGLFRQKLM 383
            +  ++     ++   + LQ+ VN L D   G         A+G+ QLLEKKEGLFR+ +M
Sbjct: 409  EGTRMREYRDLLQAIVTLQEQVNTLIDSDRGPGGMAAARQANGVKQLLEKKEGLFRKNMM 468

Query: 384  GKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPG 443
            GKRVNYA RSVISPDP L  +E+G+P  FA +LT+PE VT +N  +LR+++ING + +PG
Sbjct: 469  GKRVNYAARSVISPDPSLETHEVGVPMVFAKKLTFPEPVTSFNFHELREAVINGPDKYPG 528

Query: 444  ATHYLDKLSTMRLPPNKKM--RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGD 501
            A+   ++   +     K +  R ++  +L     A ++  ++       K VYRHL  GD
Sbjct: 529  ASAIENESGQVVNLKFKTLDERTALANQLLAPSHAKMKGNRN-------KKVYRHLTTGD 581

Query: 502  VVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRA 561
             V++NRQPTLHKPS+M H  RVL  E+ LR+ Y N ++YNAD+DGDEMN+HFPQ+ ++RA
Sbjct: 582  YVIMNRQPTLHKPSMMGHRARVLPNERVLRLPYPNTNSYNADYDGDEMNMHFPQNTIARA 641

Query: 562  EAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSG 621
            E   I +A+ QY+  ++G PLR LIQDHI  +  LT +DTF   DE+ QLLYS       
Sbjct: 642  ELSMITDADRQYISSTDGKPLRGLIQDHITVSTFLTSRDTFFEEDEYQQLLYS------- 694

Query: 622  LGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERG 681
                  +P     ++   Q V    PA  +P  LWTGKQVI+ VL +I    PP      
Sbjct: 695  ----CLRPENANTVTDRIQLV---EPAFIRPRRLWTGKQVISTVLKNIM---PP------ 738

Query: 682  GKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNK 741
                             + R  N +GK S                    PGE    +   
Sbjct: 739  -----------------NRRGLNLQGKSS-------------------TPGERWGKD--- 759

Query: 742  SKEKELSEEKLLIYKN-DLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLF 798
                  +EE  +I+K+ +L+ G++DK Q      G +  + E+YG+  AG+LLS L RL 
Sbjct: 760  ------NEEDSVIFKDGELLCGILDKKQIGASGGGFIDAIHEIYGNAIAGSLLSILGRLL 813

Query: 799  TVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP-IKLK 857
            T FL M  F+CG++DL +  + +R+R + L  +  +G+ V L+ + L+     D   +L+
Sbjct: 814  TRFLNMRAFSCGIEDLRLTPEGDRKRVDILEKAATLGRNVSLKYVTLDQNPAADQDAELR 873

Query: 858  SEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGA 917
              +E  +R   D   +  D    SQ  K T S +    L  GL+K    N + LMTT+GA
Sbjct: 874  RRLEDVLR--DDQKQSGLDSVYNSQTRKLT-SDIAASCLPHGLIKQFPWNQMQLMTTTGA 930

Query: 918  KGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQ 977
            KGS VN   IS +LGQQ LEG+RVP MVSGKTLPS+  ++  P+AGG++  RFLTG++PQ
Sbjct: 931  KGSSVNANLISCNLGQQVLEGRRVPVMVSGKTLPSYRAFETHPQAGGYVCGRFLTGIKPQ 990

Query: 978  EYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDA--DGSIVQFCYG 1035
            EYYFH MAGREGL+DTAVKT++SGYLQRCLIK +E +K+ YD SVRD    GS++QF YG
Sbjct: 991  EYYFHTMAGREGLIDTAVKTAKSGYLQRCLIKGMEAVKVEYDSSVRDTANGGSVIQFIYG 1050

Query: 1036 EDGVDVHQTSFISKFDALA---ARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQL 1092
            EDG+DV +   +  F  LA        +      F        +      M   + +G+L
Sbjct: 1051 EDGLDVGKQVHLQNFSFLANNYVSTMAQLNMTQDFHALEKPEVLQWHKDAMKQVRKTGRL 1110

Query: 1093 DASNAYIM-------------ELPDALKDNAEKFADKFLSNE-------MAKQDFLKLVK 1132
            DA +  +                  ALK   E+  DK L ++       ++K+ F  ++ 
Sbjct: 1111 DAKDPTLAVYQPGGHYGSVSEAFSLALKKYEERNPDKLLKDKKAGITGALSKKAFESVMH 1170

Query: 1133 HKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASK 1192
             K++ S+  PG+ VG++A QS+G  +TQMTLNTFHLAG    NVTLG+PRL+EI+  ASK
Sbjct: 1171 MKYLNSVIDPGDAVGIVAGQSIGSQTTQMTLNTFHLAGHSARNVTLGVPRLREIVMTASK 1230

Query: 1193 DIKTPVITCPLL 1204
               TP +T  ++
Sbjct: 1231 KPMTPTMTVEVI 1242


>gi|343429431|emb|CBQ73004.1| related to DNA-directed RNA polymerase I [Sporisorium reilianum SRZ2]
          Length = 1800

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/1181 (37%), Positives = 617/1181 (52%), Gaps = 223/1181 (18%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC    + CPGHFGHI+L  PV++PL    ++ LL+  CF+CH F+A+   + K + +
Sbjct: 63   CSTCHLNSYQCPGHFGHIELPSPVFHPLFMGNMFNLLRGTCFYCHRFRATLVVLTKVIGR 122

Query: 61   LELIIKGDIIAAKSL------------DLDLPSESSNPEDSD----VSNKSSCSMVTPRG 104
            L L+  G +  A+++            DLD     S  ED+D     + KS      P+G
Sbjct: 123  LRLLEYGLVDDAENIEAEEPRSHAKLSDLDNEEFDSANEDADDDQAATKKSKAGSSKPKG 182

Query: 105  NY------------DNVRNL--------KPQ---EWTSLQFAEAKLALLQFLK-IETTKC 140
                            VR L        K Q   E  SL +   K  +  F++ I   +C
Sbjct: 183  FTGETPAEFADRINKQVRELIKAAKASGKAQIEPEAGSLAYTARKKCINDFMQDIHKKRC 242

Query: 141  GNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRG-CNLGETFSGGEEEKDLGASSDVDA 199
            G C A +P + +  F  I        +I +N  RG   +         E+ L AS+   +
Sbjct: 243  GQCAAISPNVRRDGFLKIMEKAPLPNEIASNEQRGYLRISPVKRIAAIERRLAASAASTS 302

Query: 200  PETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPS-DVKDIIEKLWENE 258
                + + T   +Q  +A    K      +G++         ++P+ + +  +  L+ NE
Sbjct: 303  ASADADDETGIASQAISADNAPK-----EAGYR---------VMPAVECQAHLRLLFHNE 348

Query: 259  FELCSFISDMQQQGFGK---------------KAGHSI-----------FFLGVVLVPPI 292
              LCS +       FG+               K G SI           FF+ V+ VPP 
Sbjct: 349  GPLCSLL-------FGRNGPFRLGNSEGKIKPKVGDSIWATPNGASADNFFISVLAVPPT 401

Query: 293  KFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYV----------------NQPDN--- 333
            +FR  S  GD   E+ Q  LL+ VL+    + +                   N P++   
Sbjct: 402  RFRPASIMGDMTFENSQNELLTNVLKTTFAIRDQITELARLASKKDFPELGPNAPESEYR 461

Query: 334  ---AKVIVAR----------WMNLQQSVNVLFDG-KNAAGQRD---MASGICQLLEKKEG 376
               A++I +R           M LQ  VN   D  KN    R       G+ Q LEKKEG
Sbjct: 462  AAEAQLIKSREDTRRKVLNSMMQLQVDVNSFIDASKNPMPLRQGQLPPPGVKQGLEKKEG 521

Query: 377  LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
            LFR+ +MGKRVN+A RSVISPD  +  NEIG+PP FA +LTYPE VT  NV  +R  +IN
Sbjct: 522  LFRKHMMGKRVNFAARSVISPDVNIETNEIGVPPVFARKLTYPEPVTVHNVQLMRQLVIN 581

Query: 437  GAEIHPGATHY---------LDKLSTMRLPPNKKMRISIGRKLDT--------SRGAIVQ 479
            G   +PGA            LDKLS        + R ++  +L T        +RG    
Sbjct: 582  GPFKYPGAVAIRSEDGTETQLDKLSV-------EERTALANQLLTPQEHSSKQARGTFAG 634

Query: 480  PGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 539
             G  +      K V RHL+DGD++L+NRQPTLH+PS+MAH  RVL GEKT+RMHYANC++
Sbjct: 635  LGSSTRTPIANKQVLRHLRDGDILLLNRQPTLHRPSMMAHKARVLVGEKTIRMHYANCNS 694

Query: 540  YNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
            YNADFDGDEMN+HFPQ + +RAE Y + N +NQY+ P++G+PLR LIQDH+V+   +T K
Sbjct: 695  YNADFDGDEMNMHFPQSQAARAECYYVANTDNQYLTPTSGNPLRGLIQDHVVAGVWMTSK 754

Query: 600  DTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
            +T   R E+ Q+LY +       G +TG  G RVL          + PA+ KPEPLWTGK
Sbjct: 755  NTLYTRAEYQQMLYGALRPE---GKYTG--GGRVLT---------VAPALLKPEPLWTGK 800

Query: 660  QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
            QVIT VL ++                                      K +K + ++   
Sbjct: 801  QVITTVLLNL--------------------------------------KPAKADGLNLTS 822

Query: 720  SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHT 777
              K    + GK         + S+EK      ++I   +L++GV+DKA F  + +GLVH 
Sbjct: 823  KAKVAGRMWGK--------DHASEEK------VIIEDGELLQGVLDKAAFGASSFGLVHA 868

Query: 778  VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKR 837
            + E+YGS TAG LLS LSRLFT FLQ + F+C +DDLL+ K+ +  R+  +  ++  GK 
Sbjct: 869  IFEIYGSETAGKLLSILSRLFTKFLQTNAFSCRMDDLLLSKEGDEVRRTTIDAAKNNGKG 928

Query: 838  VHLE--ALELEDGAEIDPIK-LKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINE 894
            V ++   LE ED    D  + L+  +E+ +R   D  +A  D +M +  N  T S VI  
Sbjct: 929  VAMKTVGLEGEDEKNADTDRNLRIRLEEVLR--DDDKLAVLDGEMMNSSNALT-SKVIES 985

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
             L  GL K   +N + +MT SGAKGS VN  QIS  LGQQ LEG+RVP MVSGK+LPSF 
Sbjct: 986  CLPSGLYKKFPENNMQMMTGSGAKGSAVNVSQISCLLGQQALEGRRVPLMVSGKSLPSFR 1045

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
            P++ + RAGGF+  RFLTG+RPQEY+FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE +
Sbjct: 1046 PFETSARAGGFVSGRFLTGIRPQEYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGV 1105

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAA 1055
             I YD +VR+ADGSI+QF YGED +D  ++ +I +FD  AA
Sbjct: 1106 HIQYDNTVRNADGSILQFNYGEDALDTTKSKYIGQFDFTAA 1146



 Score =  338 bits (868), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 210/510 (41%), Positives = 290/510 (56%), Gaps = 55/510 (10%)

Query: 748  SEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH 805
            SEEK++I   +L++GV+DKA F  + +GLVH + E+YGS TAG LLS LSRLFT FLQ +
Sbjct: 837  SEEKVIIEDGELLQGVLDKAAFGASSFGLVHAIFEIYGSETAGKLLSILSRLFTKFLQTN 896

Query: 806  GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLE--ALELEDGAEIDPIK-LKSEIEK 862
             F+C +DDLL+ K+ +  R+  +  ++  GK V ++   LE ED    D  + L+  +E+
Sbjct: 897  AFSCRMDDLLLSKEGDEVRRTTIDAAKNNGKGVAMKTVGLEGEDEKNADTDRNLRIRLEE 956

Query: 863  AMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV 922
             +R   D  +A  D +M +  N  TS  VI   L  GL K   +N + +MT SGAKGS V
Sbjct: 957  VLRD--DDKLAVLDGEMMNSSNALTSK-VIESCLPSGLYKKFPENNMQMMTGSGAKGSAV 1013

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  QIS  LGQQ LEG+RVP MVSGK+LPSF P++ + RAGGF+  RFLTG+RPQEY+FH
Sbjct: 1014 NVSQISCLLGQQALEGRRVPLMVSGKSLPSFRPFETSARAGGFVSGRFLTGIRPQEYFFH 1073

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCL--------------IKNLECLKISYDYSVRDADGS 1028
            CMAGREGL+DTAVKTSRSGYLQRCL              ++N +   + ++Y     D +
Sbjct: 1074 CMAGREGLIDTAVKTSRSGYLQRCLIKHLEGVHIQYDNTVRNADGSILQFNYGEDALDTT 1133

Query: 1029 IVQFCYGEDGVDVHQTSFISKFDA----------LAARERGRGRGRNKFCDKGSHTFVMG 1078
              ++    D    +  ++  ++D           LAA    +   +    D     +   
Sbjct: 1134 KSKYIGQFDFTAANFENYNKRYDPKQLGEVVEAELAAEHMKKALKKPHKYDPVLSVYTPS 1193

Query: 1079 RNQEMIYKKCSGQLDASNAYIMELPDAL--------------------KDNAEKFADKFL 1118
             +   + +K + +++A   YI + P  L                     D A     +F 
Sbjct: 1194 THFGSMSEKYAKEIEA---YIEKNPSKLLADKKKKSKKRKSEVDAGAPADAATVEKLRFA 1250

Query: 1119 SNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTL 1178
              ++  + F  + K  +   L  PGE VGLLA+Q VGEPSTQMTLNTFH AG G  NVTL
Sbjct: 1251 KEKLGVEAFRAMCKVLYHRGLVDPGEAVGLLAAQGVGEPSTQMTLNTFHFAGHGAANVTL 1310

Query: 1179 GIPRLQEILTIASKDIKTPVITCPLLVGKT 1208
            GIPRL+EI+  AS+ IKTP++  P+L G T
Sbjct: 1311 GIPRLREIVMTASQKIKTPIMRLPVLDGIT 1340


>gi|358370847|dbj|GAA87457.1| DNA-directed RNA polymerase I subunit [Aspergillus kawachii IFO 4308]
          Length = 1796

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/1292 (35%), Positives = 654/1292 (50%), Gaps = 189/1292 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q  + C GH GHI+L V VYN   F+ LY LLK  C +CH F+ SR  +     K
Sbjct: 179  CTTCRQTSWSCTGHPGHIELPVHVYNVTHFDQLYRLLKGQCVYCHRFQMSRTNINSYSCK 238

Query: 61   LELIIKG--------DIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNY------ 106
            L L+  G        D I  K  D     +++   +   S +     +  R N       
Sbjct: 239  LRLLHYGLVDEVAVIDTIGGKGSD---KKKANKDGEGSSSEEEDDDDIIARRNAFVKKSI 295

Query: 107  ------DNVRNLKPQEWTSLQFAEAKLALLQFLKI--ETTKCGNCKAKNPRISKPTFGWI 158
                    +R L       L   + +  + +F K      KC +C   +P   K     I
Sbjct: 296  RQAQADGRLRGLMSGSKNPLAAEQRRALVREFFKDIGAVKKCASCSGLSPSYRKDRSSKI 355

Query: 159  HMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAAR 218
                +P          G  +  +    ++ K L +          S N +       A  
Sbjct: 356  FRKALPEKSRLTMTQAGFQIPNSLVLLQQAKKLTSKEKAALANGVSDNVSTTSETHGAEE 415

Query: 219  RHQKGSGAVPSG-FKKQKDLFSGPLLPS-DVKDIIEKLWENEFELCSFISDMQQQGFGKK 276
               +G+  V     +KQ    +   +PS +V   +  L+E E E+ S + +   +   KK
Sbjct: 416  EVARGNAIVAQAESRKQAVGETQQFMPSPEVHAAMTLLFEKEQEILSLVYN--SRPLPKK 473

Query: 277  AGH---SIFFLGVVLVPPIKFRLPS-KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPD 332
                   +FF+  +LVPP KFR  + +G   +ME  Q    + +L+ N  + N    +  
Sbjct: 474  ESQVSADMFFIKNILVPPNKFRPAAPQGPGQIMEAQQNQSFTAILK-NCDIINQISKERQ 532

Query: 333  NA-----------KVIVARWMNLQQSVNVLFDGK--NAAGQRDMAS--GICQLLEKKEGL 377
            +A           + ++   + LQ +VN+L D    N +G    A+  GI Q LEKKEGL
Sbjct: 533  SAGADSTTRVRDYRDLLHSIVTLQDTVNMLIDRDRGNLSGPAAAAAPMGIKQYLEKKEGL 592

Query: 378  FRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIING 437
            FR+ +MGKRVN+A RSVISPDP +  NEIG+P  FA +LTYPE VT  N  +++ ++ING
Sbjct: 593  FRKNMMGKRVNFAARSVISPDPNIETNEIGVPMVFAKKLTYPEPVTNHNFWEMKQAVING 652

Query: 438  AEIHPGAT---HYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG---K 491
             + +PGA+   +   +++ +R            + LD       Q    S+   +G   K
Sbjct: 653  PDKYPGASAIENEFGQVTNLRF-----------KSLDERTALANQLLAPSNWRMKGSRNK 701

Query: 492  MVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNV 551
             VYRHL  GD+VL+NRQPTLHKPSIM H  RVL  E+T+RMHYANC+TYNADFDGDEMN+
Sbjct: 702  KVYRHLTTGDIVLMNRQPTLHKPSIMGHKARVLPNERTIRMHYANCNTYNADFDGDEMNM 761

Query: 552  HFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL 611
            HFPQ+E++R+EA  + +A++QY+  ++G PLR LIQDHI      T +D+F + +E+ QL
Sbjct: 762  HFPQNELARSEAMMLADADHQYLVATSGKPLRGLIQDHISMGTWFTCRDSFFDEEEYYQL 821

Query: 612  LYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITR 671
            LYS             +P     I+   Q V    P + +P+ LWTGKQ+I+ +L +I  
Sbjct: 822  LYS-----------CLRPENSHTITDRIQTV---GPTVIRPKRLWTGKQIISTILKNI-- 865

Query: 672  GRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKP 731
                                                       M  D++G   +     P
Sbjct: 866  -------------------------------------------MPSDRAGLNLKSKSSTP 882

Query: 732  GEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQFADY--GLVHTVQELYGSNTAG 788
            G+         +  E +EE  +I+K+ +++ G++DK Q      GL+  + E+YG   AG
Sbjct: 883  GD---------RWGEGNEEGEVIFKDGEMLCGILDKKQIGPTAGGLIDAIHEIYGHTIAG 933

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
             L+S L RL T +L M  FTCG+DDL +  + +R RK  +  +  IG+ V L+ + L+  
Sbjct: 934  RLISILGRLLTRYLNMRAFTCGIDDLRLTPEGDRVRKEKISEAAAIGREVALKYVTLDQT 993

Query: 849  AEIDP-IKLKSEIEKAMR-----GGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLK 902
               D   +L+  +E+ +R     GG D+       K+++++ K          L +GL+K
Sbjct: 994  TVPDQDAELRRRMEEVLRDDEKQGGLDSVSNARTAKLSTEITK--------ACLPKGLVK 1045

Query: 903  PTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRA 962
            P   N +  MT SGAKGS VN   IS +LGQQ LEG+RVP MVSGKTLPSF  +D  P A
Sbjct: 1046 PFPWNQMQSMTISGAKGSSVNANLISCNLGQQVLEGRRVPVMVSGKTLPSFRAFDTNPMA 1105

Query: 963  GGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSV 1022
            GG++  RFLTG++PQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E LK  YD SV
Sbjct: 1106 GGYVCGRFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDSSV 1165

Query: 1023 RDA-DGSIVQFCYGEDGVDVHQTSFISKFDALA--------------------------- 1054
            R+A DGSIVQF YGEDG+D+ +   +  FD LA                           
Sbjct: 1166 REATDGSIVQFLYGEDGLDITKQVHLKDFDFLASNYVSIMSQVNLTSDFHNLEKEEVANW 1225

Query: 1055 ---ARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAE 1111
               A ++ R  G+ +  D     +  G N   I +  S  L        +  DA  D   
Sbjct: 1226 HKDAMKKVRKTGKVEAMDPVLSLYHPGGNLGSISENFSQALK-------KYEDANPDKLL 1278

Query: 1112 KFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGR 1171
            K   K ++  ++K+ F  L+  K++ S+ +PGE +G++A QS+GEPSTQMTLNTFHLAG 
Sbjct: 1279 KDKKKDVNGIISKKAFNTLMNMKYMKSVVEPGEAIGIVAGQSIGEPSTQMTLNTFHLAGH 1338

Query: 1172 GEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
               NVTLGIPRL+EI+  AS  I TP +T  L
Sbjct: 1339 SAKNVTLGIPRLREIVMTASAHIMTPTMTLIL 1370


>gi|443920271|gb|ELU40225.1| RNA polymerase I largest subunit [Rhizoctonia solani AG-1 IA]
          Length = 2541

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/1329 (35%), Positives = 654/1329 (49%), Gaps = 230/1329 (17%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC    F CPGHFGHI+L  PVY+PL    +  LL+ +C +CH FK S+ E  K   K
Sbjct: 880  CGTCRLNSFSCPGHFGHIELPSPVYHPLFMTNMLNLLRGVCMWCHQFKMSQGEKAKYEAK 939

Query: 61   LELIIKGDIIAAKSLDL------DLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKP 114
            L L+ +G + AA  +D           E + P ++    +    +       D   + + 
Sbjct: 940  LVLLERGLLAAASDVDEFSMRPGTKSEEGAEPGETISEFRRRLGLFVKHHLKDAPASTRN 999

Query: 115  QEWTSLQFAEAKLALLQFLK--IETTKCGNC--------KAKNPRISKPTFGWIHMNGMP 164
                   +   K  +  FLK  +   KC +C        K  + RI +      H   M 
Sbjct: 1000 DYKDGPVYQARKDVIQSFLKAAVGCKKCAHCDGFGYTYRKDGHTRIVEYELSRKHKTLME 1059

Query: 165  -HADIRANLI-------RGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTA 216
                +R N++       +  NL   ++    ++D     DV+  +          T + A
Sbjct: 1060 VLGKVRPNVLLLERRASQSSNLSSEYTTSNRDED----GDVEMEDAEEPEPLGESTLEDA 1115

Query: 217  ARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI----SDMQQQG 272
             R   +   +V    K  +      L P + +  + +L+  E +L + +        +Q 
Sbjct: 1116 PRDPGELPRSVSGAVKTIRGRNERVLPPEEARAHLRRLFAREPKLTTLLYGRHGPFARQA 1175

Query: 273  FGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVL---------QANIYL 323
              K A   +FFL V+ VPP +FR P++ GDSV EHPQ  LL+KVL         +A++  
Sbjct: 1176 --KAANADMFFLDVLPVPPTRFRPPARMGDSVFEHPQNELLTKVLVTAYRLRDLEASLRE 1233

Query: 324  ANAYVNQPDNAKVIVAR---------------WMNLQQSVNVLFDG-KNAAGQRDMASGI 367
            AN    + D    + A                 + LQ  VN   D  KN A  R      
Sbjct: 1234 ANKKPTERDEVDELEAAQEGHRQKLFGQLLEALIQLQIDVNSFMDSSKNPAPVRQGKLPT 1293

Query: 368  CQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNV 427
             Q              GKRVNYA RSVISPD  +  NEIGIPP FA +LT+PE VT  NV
Sbjct: 1294 HQ--------------GKRVNYAARSVISPDVNIETNEIGIPPVFARKLTFPEPVTSHNV 1339

Query: 428  VKLRDSIINGAEIHPGATH---------YLDKLSTMRLPPNKKMRISIGRKLDTSRGAIV 478
             +LR ++ING  ++PGA+          YLDK+      P+ +  ++          A  
Sbjct: 1340 KELRQAVINGTAVYPGASIVQNEDGGLIYLDKME-----PDARAALAARLLTPQEGPA-- 1392

Query: 479  QPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS 538
             P   +  +  GK VYRHL+DGD++++NRQPTLHKPS+MAH  +VLKGEKT+     N +
Sbjct: 1393 -PNDLTHRDARGKTVYRHLKDGDILILNRQPTLHKPSMMAHRAKVLKGEKTILSEKRNAT 1451

Query: 539  TYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTK 598
            T++             ++ V+R+EA +I N +NQY+  ++GDPLR LIQDH+V+   +T 
Sbjct: 1452 TFSKLLST--------ENHVARSEAIHIANTDNQYLAATSGDPLRGLIQDHVVAGVWMTN 1503

Query: 599  KDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTG 658
            K T  +R+E+ QLLY +    +    ++G           +  V  L PAIWKP+PLWTG
Sbjct: 1504 KSTMFSREEYYQLLYGALRPEN---DYSG-----------QGRVKTLPPAIWKPKPLWTG 1549

Query: 659  KQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKD 718
            KQ+I+ +L +IT   PP                             + G L+  +K    
Sbjct: 1550 KQIISTLLLNIT---PP-----------------------------NAGGLTLISK---- 1573

Query: 719  KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVH 776
                      GK G E     +K       EE +L Y  +L+ GV+DK+QF  + YGLVH
Sbjct: 1574 ----------GKVGNEHWGPHSK-------EETVLFYDGELLCGVLDKSQFGASSYGLVH 1616

Query: 777  TVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGK 836
            +V ELYG+ TAG LLS LSRLFT FLQ   FTC +DDL +  + +  R   L  ++  G 
Sbjct: 1617 SVYELYGAETAGRLLSILSRLFTKFLQHRAFTCRMDDLALTPEGDARRSKILRDAQTFGY 1676

Query: 837  RVHLEALELEDGAEIDPI--KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINE 894
               +E     DGA  +    +L   +E+ +R   DA +A  D+ +  ++   T S V   
Sbjct: 1677 EAAVENFPSLDGASPEECARRLPILLEEVLRD--DAKMANLDLTVKKKMTAVTES-VTKT 1733

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
             +  GLL+    N +  MT SGAKGS VN +QIS  LGQQELEG+RVP MVSGKTLPSF 
Sbjct: 1734 CMPHGLLRKFPDNHMQTMTMSGAKGSAVNARQISCGLGQQELEGRRVPTMVSGKTLPSFK 1793

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
            P++ A  AGG+I  RFLTG+RPQE+YFHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE L
Sbjct: 1794 PFETAAIAGGYIASRFLTGIRPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGL 1853

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDA-----------LAARERGRGRG 1063
            K+ YD +VR +D +++QF YG DG+DV +   +  F +            A R     R 
Sbjct: 1854 KVHYDGTVRGSDSAVLQFAYGGDGLDVTRQKHLLAFGSEKKKLQDQLFEFALRNERALRA 1913

Query: 1064 RNKFCD------------------KGSHTF--VMGRNQEMIYKKCSGQLDAS--NAYIME 1101
            R    D                  K  H +   M      +Y   + +  AS  +AYI E
Sbjct: 1914 RLNVLDIVGLLDEHTAVEHMQKALKKPHKYPPTMSIYPSTMYIGSTSEAYASVLDAYIKE 1973

Query: 1102 LPDAL------KDNAEKFADKFLSN--EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             P  L      K + E    K  S+  +M    F  L+  +++ SLA+PGE VGLLASQ 
Sbjct: 1974 NPHQLILAKSKKKDGEPKVPKLQSHYKQMPGAMFKLLMNVRYLRSLAEPGEAVGLLASQG 2033

Query: 1154 -----------------VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKT 1196
                               +PSTQMTLNTFH AG G  NVTLGIPRL+EI+  AS   KT
Sbjct: 2034 CVTGIAFGLDARFGYGYASKPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASTKPKT 2093

Query: 1197 PVITCPLLV 1205
            P +T PLL 
Sbjct: 2094 PTMTLPLLT 2102


>gi|281201615|gb|EFA75824.1| RNA polymerase I [Polysphondylium pallidum PN500]
          Length = 1674

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/972 (41%), Positives = 536/972 (55%), Gaps = 134/972 (13%)

Query: 273  FGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQAN-IYLANAYVNQP 331
            F K+A    FFL  + V P K+R  +  G    EH   V    +L+AN +       ++ 
Sbjct: 378  FVKEASIESFFLTALPVIPNKYRPCNVVGGKSTEHGANVHYKGILRANKLIRKQIESSES 437

Query: 332  DNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMA-SGICQLLEKKEGLFRQKLMGKRVNYA 390
            D AK +V     LQ  +N ++D   A      A +G+ Q+LEKKEGLFR+ +MGKRVNYA
Sbjct: 438  DTAKNMVTNVCELQFHINNIYDNSRAVTVGATAPAGMKQVLEKKEGLFRKNMMGKRVNYA 497

Query: 391  CRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDK 450
             R+VISPD  L  NE+G+P  FA +LT+P+ VTP N  ++  ++INGA+++PGA    D+
Sbjct: 498  ARTVISPDISLETNEMGVPQLFAKKLTFPQPVTPVNYQEMAAAVINGADVYPGANFIEDE 557

Query: 451  LSTM----RLPPNKKMRISIGRKLDTSR-----GAIVQPGKDSDNEFEGKMVYRHLQDGD 501
            L  +    +  P K  RI++ + L T R     GAI             K VYRHL  GD
Sbjct: 558  LGNIINLEKETPEK--RIALSKTLLTVRPQAPHGAI-------------KKVYRHLVSGD 602

Query: 502  VVLVNRQPTLHKPSIMAHVVRVL-KGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSR 560
             VL NRQPTLHKP I  H V+VL K EKTLRMHY NCSTYNADFDGDEMN+HFPQ  ++ 
Sbjct: 603  YVLANRQPTLHKPGISGHRVKVLGKNEKTLRMHYCNCSTYNADFDGDEMNIHFPQSLLAA 662

Query: 561  AEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSS 620
            AE   I   N QY+ P  G PLR LIQDHI++  LLTK+DT   + EF ++LY+S  S +
Sbjct: 663  AEVREIAANNFQYLGPRAGVPLRGLIQDHILTGVLLTKRDTLFTKGEFQKVLYASCWSVN 722

Query: 621  GLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVER 680
                    P                 P I KP+PLW+GKQ+I+A L+H+T G  P     
Sbjct: 723  TKHPIRTPP-----------------PCILKPQPLWSGKQLISAALDHLTIGYAPLNFTG 765

Query: 681  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
              K+    +                                       GK G E      
Sbjct: 766  SSKISTKLW---------------------------------------GKHGPEL----- 781

Query: 741  KSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLF 798
                  + +  ++I +N+++ G++DK  F     GLVHT  ELY  + AG LL+ L R+F
Sbjct: 782  ------MRDSHVIIRENEMLVGILDKNHFGATGNGLVHTCYELYHPDIAGQLLTLLGRMF 835

Query: 799  TVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKS 858
            T +L   GFTCG+DDLLI   +   R   L  + + G +V   A +  D    + + +  
Sbjct: 836  TNYLSTRGFTCGLDDLLINNKENAFRSECLDRANKEGLQV---AAKFADQPSYERVAVSK 892

Query: 859  EIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAK 918
             +  A+R   +  VA  D  +   LN HT S +I+ LL  G LK    N  SLMT SGAK
Sbjct: 893  YMADALR--EEREVARLDGMLKKALNSHT-SKIIDTLLPGGQLKAFPDNNFSLMTNSGAK 949

Query: 919  GSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQE 978
            GS VNF Q+S  LGQQELEGKRVPRMVSGKTLPS+ P+D + RAGGFI+DRFLTG+RPQ+
Sbjct: 950  GSVVNFSQVSCLLGQQELEGKRVPRMVSGKTLPSYEPYDASARAGGFIMDRFLTGVRPQD 1009

Query: 979  YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDG 1038
            YYFHCMAGREGL+DTAVKT+RSGYLQRC+IK+LE L + YD +VRD+DGS++QF YGED 
Sbjct: 1010 YYFHCMAGREGLIDTAVKTARSGYLQRCIIKHLEGLTVQYDNTVRDSDGSVIQFNYGEDS 1069

Query: 1039 VDVHQTSFISKFDALAA----------------RERGRGRGRNKF-----------CDKG 1071
            +++ +  ++  FD +A                  +R   +   +             DK 
Sbjct: 1070 LEITKRQYLLNFDMIAQNFTLFKSHFVEDLKDIEQRWNSKAVKEILDYHEKIASLPADKR 1129

Query: 1072 SHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLV 1131
                +   N   I       +D  N YI      L   A     K  S ++ +++F +L+
Sbjct: 1130 PDPVLSKFNVTDIGVTSESFMDELNKYIAANNLGLIKTA-----KNKSGKIPEREFRQLM 1184

Query: 1132 KHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIAS 1191
               +      PGE VGLL +QS+GEPSTQMTLNTFHLAGRGE NVTLGIPRL+EI+  AS
Sbjct: 1185 MLNYNRCTVAPGESVGLLCAQSIGEPSTQMTLNTFHLAGRGEANVTLGIPRLREIIQTAS 1244

Query: 1192 KDIKTPVITCPL 1203
            +   TP++   L
Sbjct: 1245 RVPSTPLMDIVL 1256



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 50/75 (66%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TC      CPGH+GHI+L VP YNP++F +L+ LL+  C  CH FK  +  ++  +++
Sbjct: 64  CQTCNLHHVDCPGHYGHIELAVPTYNPVMFKVLFKLLQNTCLNCHRFKHGKATIDSLIQE 123

Query: 61  LELIIKGDIIAAKSL 75
           LEL+  G+I+ AK +
Sbjct: 124 LELLYSGEIVKAKQV 138


>gi|336373803|gb|EGO02141.1| hypothetical protein SERLA73DRAFT_86356 [Serpula lacrymans var.
            lacrymans S7.3]
          Length = 1688

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1043 (39%), Positives = 575/1043 (55%), Gaps = 169/1043 (16%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFI-------SDMQQQGFGKKAGHSIFFLGVVLVPPIKF 294
            + P + +  + +L++ E  +CS +       + + ++G    A   +FF+ VV V P +F
Sbjct: 305  MAPEECRAHLRRLFQKEAIICSLLFGRHGPFAPISREGLSF-ASADMFFMEVVPVSPTRF 363

Query: 295  RLPSKGGDSVMEHPQTVLLSKVLQ---------ANIYLANAYVNQPDNAK------VIVA 339
            R P+K G+++ EHPQ  LLSKVL          A++  A +  ++ D +        ++ 
Sbjct: 364  RPPAKMGETLFEHPQNELLSKVLHTSYRLRDLNADLRAATSKSSEADESSRRKLLGTLLE 423

Query: 340  RWMNLQQSVNVLFDG-KNAAGQRD---MASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
              + LQ  VN   D  KN A  R      +G+ Q LEKKEGLFR+ +MGKRVNYA RSVI
Sbjct: 424  TLIQLQADVNSFMDSSKNPAPMRQGKLPPAGVKQSLEKKEGLFRKHMMGKRVNYAARSVI 483

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGAT---------H 446
            SPD  +  NEIGIPP FA +LT+PE VTP N  +LR  +I G + +PGAT          
Sbjct: 484  SPDVNIEPNEIGIPPVFARKLTFPEPVTPANFHELRQRVITGPKGYPGATIVEFEDGHQQ 543

Query: 447  YLDKLSTMRLPPNKKMRISIGRKLDTSRGA----IVQPGKDSDNEFEGKMVYRHLQDGDV 502
             L+KLS        + R +I  +L T +G+      + G  +      K VYRHLQDGD+
Sbjct: 544  SLEKLSV-------EQRTAIANQLLTPQGSNNNGSGRSGLSTRTTSINKKVYRHLQDGDI 596

Query: 503  VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
            +++NRQPTLHKPS+M H  R+L+GEKT+RMHYANC++YN      EMN+HFPQ++V+RAE
Sbjct: 597  LILNRQPTLHKPSMMCHKARILQGEKTIRMHYANCNSYN------EMNIHFPQNQVARAE 650

Query: 563  AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL 622
            A  I N +NQY+ P++G PLR LIQDH+V+   +T +D F +R+E+ QLLY +       
Sbjct: 651  AMFIANTDNQYLVPTSGKPLRGLIQDHVVAGVWMTCQDAFFSREEYFQLLYGALRPEDD- 709

Query: 623  GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGG 682
                         S +   ++ + P IWKP+PLWTGKQ+I+ VL +IT          GG
Sbjct: 710  -------------SHNTGRLVTMPPTIWKPKPLWTGKQIISTVLKNITPSNA------GG 750

Query: 683  KLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKS 742
                       N D ++    +  GK S  +K+                           
Sbjct: 751  ----------LNLDSKAKVPGHLWGKDSSEDKV--------------------------- 773

Query: 743  KEKELSEEKLLIYKNDLVRGVIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTV 800
                      +    +L+ GV+DK+ F   D+GLVH++ ELYG++ AG LL  LSRLFT 
Sbjct: 774  ----------IFMDGELLCGVLDKSAFGATDFGLVHSIYELYGADIAGNLLGILSRLFTK 823

Query: 801  FLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL-ELEDGAEID-PIKLKS 858
            FLQ   FTC +DDL +    +  R + L     +G    +E    L   A+ D P  L +
Sbjct: 824  FLQHRAFTCRMDDLALTPAGDARRMDLLRRGSNLGTEGAIENFPSLSKTAKADIPAALSA 883

Query: 859  EIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAK 918
             +E  +R   D  +A  D+ + ++L+  T  S+ +  +  GLL+    N +  MT SGAK
Sbjct: 884  LLEDVLR--DDNKMAGLDVTVKTKLSTLT-KSIADACMPHGLLRKFPHNHMQTMTLSGAK 940

Query: 919  GSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQE 978
            GS VN QQIS  LGQQELEG+RVP MVSGKTLPSF  ++    AGG++  RFLTG++PQE
Sbjct: 941  GSAVNAQQISCALGQQELEGRRVPVMVSGKTLPSFKTFETKAIAGGYVASRFLTGVKPQE 1000

Query: 979  YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDG 1038
            +YFHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE +++ YD++VR +D SI QF YG D 
Sbjct: 1001 FYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIRVHYDHTVRGSDSSIYQFQYGGDA 1060

Query: 1039 VDVHQTSFISKFDALAARE-----------------------------RGRGRGRNKFC- 1068
            +DV +   + +F+ +A  +                             + +   R+ F  
Sbjct: 1061 LDVTKQKHLRQFEFVARNDLTFLNLYRPKDIAGLVNDSDAVEYMKKVLKKKSASRDAFTP 1120

Query: 1069 --DKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDAL---KDNAEKFADKFLSNEMA 1123
              D  S +  +G   E      +G +D    Y+   PD L   KD   +   K     + 
Sbjct: 1121 TLDLYSPSRYLGSTSENF----AGAID---KYVKANPDKLFKPKDVDAELPIKRRRQFIP 1173

Query: 1124 KQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRL 1183
             + F  L+  K++ SL +PGE VGLLASQ VGEPSTQMTLNTFH AG G  NVTLGIPRL
Sbjct: 1174 TKRFRLLMNVKYMRSLVEPGEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRL 1233

Query: 1184 QEILTIASKDIKTPVITCPLLVG 1206
            +EI+  AS+  KTP +T  +  G
Sbjct: 1234 REIVMTASQKPKTPSMTMEVRSG 1256



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 47/76 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    F CPGHFGHI+L  P+Y+PL    LY +L+  C FCH FK SR  + K + K
Sbjct: 63  CATCRLTYFTCPGHFGHIELPAPLYHPLFMANLYNILRGTCLFCHKFKISRSVICKYIAK 122

Query: 61  LELIIKGDIIAAKSLD 76
             L+ +G + AA+ +D
Sbjct: 123 FRLLERGLLGAAQGVD 138


>gi|425770097|gb|EKV08571.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
 gi|425771644|gb|EKV10081.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
          Length = 1673

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/1274 (35%), Positives = 667/1274 (52%), Gaps = 171/1274 (13%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q  F C GH GHI+L VP YN   F+ ++ LL+  C +C   +  R +V     K
Sbjct: 63   CTTCRQNSFTCTGHPGHIELPVPFYNVTFFDHIFRLLRAQCVYCLRLQMGRNQVNMYTCK 122

Query: 61   LELIIKG---DIIAAKSLDLDLPSESSNPEDSDVSNKSSCSM-----VTPRGNYDNVRNL 112
            L L+  G   ++    ++     ++S   +D +  +  S        +  R +Y   R  
Sbjct: 123  LRLLQYGLVDEVSIVDAMGAVKGAKSKATKDKEDDSDDSDDPDDDDYMQKRTDYVTRRIR 182

Query: 113  KPQEWTSLQ----------FAEAKLALLQ--FLKIET-TKCGNCKAKNPRISKPTFGWIH 159
            + ++   L            AEA+  LL+  F  I    KC NC   +P   K  +  I 
Sbjct: 183  EAKKEGKLDGLMPGGQNPIAAEARRELLKAFFKDINGFKKCVNCSGVSPAYKKDRYNKIF 242

Query: 160  MNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARR 219
               +P     A L  G     T    ++E++  + S     E H            A   
Sbjct: 243  RKQLPEKQKLAMLQGGFQAPNTMVLLDQERN--SKSKNGFSEIHG-----------AEEE 289

Query: 220  HQKGSGAVPS--GFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKA 277
             ++G   V    G   Q+ + S     S+V   +  L++ E E+   + + +    G K 
Sbjct: 290  IRRGVAVVQEVQGSAGQEFMSS-----SEVYGALHLLFQKESEILQLVYNSRPVPKGVKV 344

Query: 278  -GHSIFFLGVVLVPPIKFR-LPSKGGDSVMEHPQTVLLSKVLQA--NIYLANAYVNQPDN 333
                +FF+  ++VPP K+R    +G  +VME  Q    + +L+    I   +  +   + 
Sbjct: 345  VSADMFFIKSLMVPPNKYRPAVQQGAGTVMEAQQNTSFNAILKGCDTINQISKEIQNEEE 404

Query: 334  AKVIVAR-WMNLQQSVNVLFDGKNAAGQRDMAS-----------GICQLLEKKEGLFRQK 381
              +  AR + +L Q++  L D  N    RD  S           GI Q+LEKKEGLFR+ 
Sbjct: 405  KTMSRARNYSDLLQAIVQLQDVVNGLIDRDRTSVTGSAAASQPNGIKQILEKKEGLFRKN 464

Query: 382  LMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIH 441
            +MGKRVN+A RSVISPDP +  NEIG+P  FA +LT+PE VT  N  +L++++ING + +
Sbjct: 465  MMGKRVNFAARSVISPDPNIEPNEIGVPLVFAKKLTFPEPVTNHNFWELKEAVINGPDKY 524

Query: 442  PGATHYLD---KLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQ 498
            PGA+   +   ++  ++   N + R ++  +L       + P          K VYRHL 
Sbjct: 525  PGASSIENENGQVINLKFK-NLEERTALANQL-------LAPSNWRQKGSRNKKVYRHLT 576

Query: 499  DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
             GD VL+NRQPTLHKPSIM H  RVL  E+ +RMHYANC+TYNADFDGDEMN+HFPQ+E+
Sbjct: 577  TGDYVLMNRQPTLHKPSIMGHKARVLPNERVIRMHYANCNTYNADFDGDEMNMHFPQNEL 636

Query: 559  SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
            ++AEA  + +A++QY+  ++G PLR LIQDHI     +T +D+F + +++ QLLYS    
Sbjct: 637  AQAEARMLADADHQYLVATSGKPLRGLIQDHISMGTWVTCRDSFYDEEDYHQLLYS---- 692

Query: 619  SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVV 678
                     +P    +++   Q V P   A+ KP+ LWTGKQ+IT +L +I   +PP   
Sbjct: 693  -------CLRPEHSHIVTDRIQLVEP---AMRKPKCLWTGKQIITTILKNI---QPP--- 736

Query: 679  ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 738
            ERGG                          L+  +K                PGE     
Sbjct: 737  ERGG--------------------------LTLKSK-------------SSTPGE----- 752

Query: 739  KNKSKEKELSEEKLLIYKN-DLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALS 795
                +  E +EE  +I+++ + + G++DK Q      GL+  + E+YG +TAG L+  L 
Sbjct: 753  ----RWGEGNEEGEVIFQDGEYLCGILDKKQLGPTAGGLIDAIHEVYGYSTAGKLIGVLG 808

Query: 796  RLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIK 855
            RL T  L + GF+CG+DDL + K+ +R RK  L  + ++G+ V L+ + L+        +
Sbjct: 809  RLLTRVLNLRGFSCGIDDLRLTKEGDRIRKEKLATAPQMGREVALKYVTLDKAPGDQTAE 868

Query: 856  LKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTS 915
            L   +E+ +R   D   +  D  +++  +   SS + +  L  GL KP   N +  MT S
Sbjct: 869  LNRRLEEVLRD--DDKQSGLD-SVSNARSAKLSSEITSACLPYGLAKPFPWNQMQSMTIS 925

Query: 916  GAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLR 975
            GAKGS VN   IS +LGQQ LEG+RVP M+SGK+LPSF  ++  P AGG++  RFLTG++
Sbjct: 926  GAKGSGVNANLISCNLGQQVLEGRRVPLMISGKSLPSFKAFETNPMAGGYVSGRFLTGIK 985

Query: 976  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDA-DGSIVQFCY 1034
            PQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E LK  YD SVR+A DGSIVQF Y
Sbjct: 986  PQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDSSVREASDGSIVQFLY 1045

Query: 1035 GEDGVDVHQTSFISKFDALAAR-----ERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCS 1089
            GEDG+D+ +   ++ FD LA       ++ +    +K   +   T+       M   + +
Sbjct: 1046 GEDGLDITKQVHLNDFDFLAQNHISISKQVQADDYHKLAKENVTTW---HKDAMKAVRKT 1102

Query: 1090 GQLDASNAYIMELP---------DALKDNAEKFAD-----------KFLSNEMAKQDFLK 1129
            G++DA +  +   P         +A     +K+AD           K +  ++ K+ F  
Sbjct: 1103 GKIDAVDPVLSHFPPGGNLGSTSEAFAQELKKYADVNKNKLIKDKKKNIEGKITKKTFEA 1162

Query: 1130 LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTI 1189
            L+  K++ S+  PGE VG++A QSVGEPSTQMTLNTFHLAG    NVTLGIPRL+EI+  
Sbjct: 1163 LMNMKYMKSIIDPGEAVGIMAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMT 1222

Query: 1190 ASKDIKTPVITCPL 1203
            AS  I TP +T  L
Sbjct: 1223 ASAKIMTPTMTLLL 1236


>gi|383860778|ref|XP_003705866.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Megachile
            rotundata]
          Length = 1702

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/1068 (38%), Positives = 580/1068 (54%), Gaps = 178/1068 (16%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGK---KAGHSIFFLGVVLVPPIKFRLPS 298
            +LP   K+I+ KLWENE      I       FG    +    +FF  V+ V P   R  +
Sbjct: 270  ILPDQSKEILRKLWENEGNFLKIILPC----FGMVDIEYPTDVFFFEVIPVLPPIVRPVN 325

Query: 299  KGGDSVMEHPQTVLLSKVLQANIYLANAY-------VNQ-PDNAKVIVAR---------- 340
                 ++EHPQ+ +   ++Q  + L N          NQ P+  K++  +          
Sbjct: 326  FVNGQMIEHPQSQVYKSIIQDCLVLRNIIQTIQDGNTNQLPEEGKLVFEQIKGNTAIEKL 385

Query: 341  ---WMNLQQSVNVLFD-GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
               W +LQ +V+ L D   N   +     G+ Q++EKKEG+ R  +MGKRVN+A RSVI+
Sbjct: 386  HNAWQSLQINVDHLMDRDMNKTAESANCQGLKQVIEKKEGVIRMHMMGKRVNFAARSVIT 445

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY-LDKLSTMR 455
            PDP L ++EIGIP  FAL+LTYP  VT WN   LR  I+NG ++HPGA     +  S  R
Sbjct: 446  PDPNLNIDEIGIPETFALKLTYPVPVTSWNAAWLRKLILNGPDVHPGAVMVEHEDGSVQR 505

Query: 456  LP-PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-KMVYRHLQDGDVVLVNRQPTLHK 513
            +   N + R +I ++L TS  A           F+G K+++RHLQ+GD++L+NRQPTLHK
Sbjct: 506  ISGDNDQQRKAIAKRLLTSDKA--------HKFFKGVKVIHRHLQNGDILLLNRQPTLHK 557

Query: 514  PSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQY 573
            PSIMAH  R+LKGEKTLR+HYANC  YNADFDGDEMN HFPQ+E++R+E YNI N +NQY
Sbjct: 558  PSIMAHKARILKGEKTLRLHYANCKAYNADFDGDEMNAHFPQNELARSEGYNIANVSNQY 617

Query: 574  VRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRV 633
            + P +G PL  LIQDH++S   LT +  F +R ++ QL+Y++                  
Sbjct: 618  LVPKDGTPLSGLIQDHMISGVRLTVRGAFFSRIDYMQLVYAA------------------ 659

Query: 634  LISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRF 693
             +S  + +++ L P+I KP PLW+GKQ+++ V+ +I              +P +  +   
Sbjct: 660  -LSTIKDDIILLPPSIIKPTPLWSGKQIVSTVIINI--------------IPPNQARINL 704

Query: 694  NADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLL 753
             A  + + K+    K  +                  + G E       S  K +SE +++
Sbjct: 705  TASAKINAKEWQVAKARR-----------------WRCGTEF------SNPKTMSEAEVI 741

Query: 754  IYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
            I   +L+ GV+DK  +    +GL+H V ELYG + +  LLSA  +LF   LQ++GFT G+
Sbjct: 742  IRNGELLCGVLDKTHYGATPFGLIHCVFELYGGDCSTKLLSAFGKLFQAGLQLNGFTLGI 801

Query: 812  DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAA 871
            +D+L+LK  + +R+  +     IG+ +    LEL D    D +  K E          A 
Sbjct: 802  EDILLLKKADTKRREIISNCRNIGEDIQKSILELPDDTSTDVVTSKMEESYWSNPKFRAQ 861

Query: 872  VAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHL 931
            V   D K  + L+ +T+  +    L  GLLK    N + LM  SGAKGS VN  QIS  L
Sbjct: 862  V---DRKYKTALDVYTND-INKTCLPAGLLKKFPDNNLQLMVQSGAKGSTVNTMQISCLL 917

Query: 932  GQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLV 991
            GQ ELEGKR P M+SGK+LPSF  +D  PRAGGFI  RF+TG++PQE++FHCMAGREGL+
Sbjct: 918  GQIELEGKRPPLMISGKSLPSFPAYDPTPRAGGFIDGRFMTGIKPQEFFFHCMAGREGLI 977

Query: 992  DTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYG---------------- 1035
            DTAVKTSRSGYLQRCLIK+LE L I+YD +VRD+DGS+VQ  YG                
Sbjct: 978  DTAVKTSRSGYLQRCLIKHLEGLVINYDTTVRDSDGSLVQIYYGEDGLDVPGSRFLRKEQ 1037

Query: 1036 --------------EDGVDVHQTSFISKFDALAAR------------ERGRGRGRNKFCD 1069
                          ED   + + S   K   L  R            ++ R     KFC 
Sbjct: 1038 INFLVDNKNAIIDEEDARYLKEVSDTDKILKLVKRIKKWESKHGSSLQKRRISPFAKFCV 1097

Query: 1070 KGSHTFVMGRNQEM---------------------------IYKKCSGQLDASNAYIMEL 1102
            + ++T    + + +                           IY +C+   D   +   + 
Sbjct: 1098 ENTNTIKASKFKRLDENSGRSKAALSLMRKWIRTTEEERKPIYNQCTECPDPVMSKYRQD 1157

Query: 1103 PD--ALKDNAEKFADKFLSN-----EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVG 1155
             D   L +  EK  D+++++     +++++D   ++  K +  +  PGEPVGLLA+QS+G
Sbjct: 1158 VDFGVLSERLEKLIDEYMASTSRNVDVSRKDLRDILSMKVMKIVCPPGEPVGLLAAQSIG 1217

Query: 1156 EPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            EPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +ASK+IKTP +  P 
Sbjct: 1218 EPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMASKNIKTPSMEIPF 1265



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 32/173 (18%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF------------- 47
           C TCG   F C GHFGHI+L +PV NPL    L  L+K  C  C                
Sbjct: 72  CGTCGCNVFKCQGHFGHIELPMPVVNPLFHKGLCMLIKLACLKCFTLQIPPYVKLLLSTK 131

Query: 48  -----KASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPED--SDVSNKSSCSMV 100
                +    +VE   +++  I+     +    D+DL S  +  +D   ++ NKS  +  
Sbjct: 132 LRLLQQGYLSDVEGLEQEIMFIVSN---SNDPYDVDLESLQNVTDDYIENLINKSRFNQS 188

Query: 101 TPRGNYD--NVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRIS 151
             + N D  N +N+  Q W    + E  L      KI    C NC+   P+I+
Sbjct: 189 AVQYNEDQLNTKNINMQ-WH--MYVENVLKQYTAPKI----CKNCQKPIPKIT 234


>gi|214028088|gb|ACJ63313.1| RNA polymerase I large subunit [Drimys winteri]
          Length = 539

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/619 (57%), Positives = 421/619 (68%), Gaps = 91/619 (14%)

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            VHFPQDE+SRAEA NI NAN QY+ P++GDP+R LIQDHI+SA LLTKKDTFL RDE+ Q
Sbjct: 1    VHFPQDEISRAEAMNIANANKQYIVPTSGDPIRGLIQDHIISAVLLTKKDTFLTRDEYHQ 60

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            LLYSSGV+++   SF GK G+ V    SE ++ P+LPAIWKP PLWTGKQVIT +LNHIT
Sbjct: 61   LLYSSGVTAAAPRSFIGKFGKTVSTISSEDDIKPVLPAIWKPRPLWTGKQVITTILNHIT 120

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
            RGRPPF V+                               KT ++ ++  G         
Sbjct: 121  RGRPPFTVK-------------------------------KTGRIPREYFGINN------ 143

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTL 790
                              E KLLI KN+LV GVIDKAQF  YGLVHTVQELYGS+TAG L
Sbjct: 144  -----------------GEIKLLIQKNELVHGVIDKAQFGKYGLVHTVQELYGSDTAGIL 186

Query: 791  LSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAE 850
            LS  SRLFTVFLQMHGFTCGVDDLLI +  +RER   L  +E+IG+ VH + +  +DG  
Sbjct: 187  LSVFSRLFTVFLQMHGFTCGVDDLLIFQQSDRERTMKLGNAEKIGEHVHSQFVGAKDGG- 245

Query: 851  IDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS 910
            IDP  L+ EIE+ +R  GD+A+A  D  M+S LN+ TS  V N L   GL KP  +N +S
Sbjct: 246  IDPKTLQMEIERVLRSNGDSAIASLDRLMSSALNRLTSE-VNNRLFPRGLFKPFPRNCLS 304

Query: 911  LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRF 970
            LMTT+GAKG  VNF QISS LGQQELEGKRVPRMVSGKTLP F PWD A RAGGFI DRF
Sbjct: 305  LMTTTGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDCASRAGGFISDRF 364

Query: 971  LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIV 1030
            L+GLRPQEYYFHCMAGREGLVDTA+KTSRSGYLQRCLIKNLE LK+ YD++VRDADGSI+
Sbjct: 365  LSGLRPQEYYFHCMAGREGLVDTAIKTSRSGYLQRCLIKNLESLKVCYDHTVRDADGSII 424

Query: 1031 QFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSG 1090
            QFCYGEDGVDVH+TSFI++F  LAA                        NQ ++ +K SG
Sbjct: 425  QFCYGEDGVDVHKTSFIAEFKMLAA------------------------NQNIVLEKLSG 460

Query: 1091 QLD-----ASNAYIMELPDALKDNAEKF-----ADKFLSNEMAKQ-DFLKLVKHKFVLSL 1139
            QL+      S+AYI ELP+AL+  A+ F       K  S  + KQ +F+ L+K K++ SL
Sbjct: 461  QLEDAHLSKSDAYIKELPNALERKAKDFFCSLTKKKRHSLHLRKQKNFMNLMKLKYLSSL 520

Query: 1140 AQPGEPVGLLASQSVGEPS 1158
            AQPGE VG++A+QSVGEPS
Sbjct: 521  AQPGEAVGVIAAQSVGEPS 539


>gi|336386619|gb|EGO27765.1| hypothetical protein SERLADRAFT_446992 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1710

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1043 (39%), Positives = 575/1043 (55%), Gaps = 169/1043 (16%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFI-------SDMQQQGFGKKAGHSIFFLGVVLVPPIKF 294
            + P + +  + +L++ E  +CS +       + + ++G    A   +FF+ VV V P +F
Sbjct: 332  MAPEECRAHLRRLFQKEAIICSLLFGRHGPFAPISREGLSF-ASADMFFMEVVPVSPTRF 390

Query: 295  RLPSKGGDSVMEHPQTVLLSKVLQ---------ANIYLANAYVNQPDNAK------VIVA 339
            R P+K G+++ EHPQ  LLSKVL          A++  A +  ++ D +        ++ 
Sbjct: 391  RPPAKMGETLFEHPQNELLSKVLHTSYRLRDLNADLRAATSKSSEADESSRRKLLGTLLE 450

Query: 340  RWMNLQQSVNVLFDG-KNAAGQRD---MASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
              + LQ  VN   D  KN A  R      +G+ Q LEKKEGLFR+ +MGKRVNYA RSVI
Sbjct: 451  TLIQLQADVNSFMDSSKNPAPMRQGKLPPAGVKQSLEKKEGLFRKHMMGKRVNYAARSVI 510

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGAT---------H 446
            SPD  +  NEIGIPP FA +LT+PE VTP N  +LR  +I G + +PGAT          
Sbjct: 511  SPDVNIEPNEIGIPPVFARKLTFPEPVTPANFHELRQRVITGPKGYPGATIVEFEDGHQQ 570

Query: 447  YLDKLSTMRLPPNKKMRISIGRKLDTSRGA----IVQPGKDSDNEFEGKMVYRHLQDGDV 502
             L+KLS        + R +I  +L T +G+      + G  +      K VYRHLQDGD+
Sbjct: 571  SLEKLSV-------EQRTAIANQLLTPQGSNNNGSGRSGLSTRTTSINKKVYRHLQDGDI 623

Query: 503  VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
            +++NRQPTLHKPS+M H  R+L+GEKT+RMHYANC++YN      EMN+HFPQ++V+RAE
Sbjct: 624  LILNRQPTLHKPSMMCHKARILQGEKTIRMHYANCNSYN------EMNIHFPQNQVARAE 677

Query: 563  AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL 622
            A  I N +NQY+ P++G PLR LIQDH+V+   +T +D F +R+E+ QLLY +       
Sbjct: 678  AMFIANTDNQYLVPTSGKPLRGLIQDHVVAGVWMTCQDAFFSREEYFQLLYGALRPEDD- 736

Query: 623  GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGG 682
                         S +   ++ + P IWKP+PLWTGKQ+I+ VL +IT          GG
Sbjct: 737  -------------SHNTGRLVTMPPTIWKPKPLWTGKQIISTVLKNITPSNA------GG 777

Query: 683  KLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKS 742
                       N D ++    +  GK S  +K+                           
Sbjct: 778  ----------LNLDSKAKVPGHLWGKDSSEDKV--------------------------- 800

Query: 743  KEKELSEEKLLIYKNDLVRGVIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTV 800
                      +    +L+ GV+DK+ F   D+GLVH++ ELYG++ AG LL  LSRLFT 
Sbjct: 801  ----------IFMDGELLCGVLDKSAFGATDFGLVHSIYELYGADIAGNLLGILSRLFTK 850

Query: 801  FLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL-ELEDGAEID-PIKLKS 858
            FLQ   FTC +DDL +    +  R + L     +G    +E    L   A+ D P  L +
Sbjct: 851  FLQHRAFTCRMDDLALTPAGDARRMDLLRRGSNLGTEGAIENFPSLSKTAKADIPAALSA 910

Query: 859  EIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAK 918
             +E  +R   D  +A  D+ + ++L+  T  S+ +  +  GLL+    N +  MT SGAK
Sbjct: 911  LLEDVLR--DDNKMAGLDVTVKTKLSTLT-KSIADACMPHGLLRKFPHNHMQTMTLSGAK 967

Query: 919  GSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQE 978
            GS VN QQIS  LGQQELEG+RVP MVSGKTLPSF  ++    AGG++  RFLTG++PQE
Sbjct: 968  GSAVNAQQISCALGQQELEGRRVPVMVSGKTLPSFKTFETKAIAGGYVASRFLTGVKPQE 1027

Query: 979  YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDG 1038
            +YFHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE +++ YD++VR +D SI QF YG D 
Sbjct: 1028 FYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIRVHYDHTVRGSDSSIYQFQYGGDA 1087

Query: 1039 VDVHQTSFISKFDALAARE-----------------------------RGRGRGRNKFC- 1068
            +DV +   + +F+ +A  +                             + +   R+ F  
Sbjct: 1088 LDVTKQKHLRQFEFVARNDLTFLNLYRPKDIAGLVNDSDAVEYMKKVLKKKSASRDAFTP 1147

Query: 1069 --DKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDAL---KDNAEKFADKFLSNEMA 1123
              D  S +  +G   E      +G +D    Y+   PD L   KD   +   K     + 
Sbjct: 1148 TLDLYSPSRYLGSTSENF----AGAID---KYVKANPDKLFKPKDVDAELPIKRRRQFIP 1200

Query: 1124 KQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRL 1183
             + F  L+  K++ SL +PGE VGLLASQ VGEPSTQMTLNTFH AG G  NVTLGIPRL
Sbjct: 1201 TKRFRLLMNVKYMRSLVEPGEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRL 1260

Query: 1184 QEILTIASKDIKTPVITCPLLVG 1206
            +EI+  AS+  KTP +T  +  G
Sbjct: 1261 REIVMTASQKPKTPSMTMEVRSG 1283



 Score = 83.2 bits (204), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 47/76 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    F CPGHFGHI+L  P+Y+PL    LY +L+  C FCH FK SR  + K + K
Sbjct: 63  CATCRLTYFTCPGHFGHIELPAPLYHPLFMANLYNILRGTCLFCHKFKISRSVICKYIAK 122

Query: 61  LELIIKGDIIAAKSLD 76
             L+ +G + AA+ +D
Sbjct: 123 FRLLERGLLGAAQGVD 138


>gi|443724446|gb|ELU12458.1| hypothetical protein CAPTEDRAFT_154177 [Capitella teleta]
          Length = 1442

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1066 (38%), Positives = 583/1066 (54%), Gaps = 177/1066 (16%)

Query: 242  LLPSDVKDIIEKLWENEFE-LCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKG 300
            L  +DV+  +++LW N+ E L   I  +            +FF+ V+ V P KFR  S  
Sbjct: 21   LTQTDVRKHLQQLWVNDSEFLRKLIGALDVCSKDVDNPFDVFFIEVLPVIPTKFRPVSFM 80

Query: 301  GDSVMEHPQTVLLSKV------LQANIYLANAYVNQPD----------NAKVIVARWMNL 344
            G+   E  QT  L +       L+  +    A    P+           ++ + A W+ L
Sbjct: 81   GEKKFESGQTTTLCRCVGLCWELRGILASMKADEETPEITEEVPGRKSKSEKLYAAWIAL 140

Query: 345  QQSVNVLFDGK-----NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDP 399
            Q  VN + D              +  G+ Q+LEKKEGLFR+ +MGKRV++ACRSVISPDP
Sbjct: 141  QVGVNAIVDSTLDVDMTVKSNNKIMPGVRQILEKKEGLFRKFMMGKRVDFACRSVISPDP 200

Query: 400  YLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY-LDKLSTMRLPP 458
            Y++ N+IG+P  FAL+LTYP+ VTPWN  +L+ +++NG   HPGAT   ++    + L  
Sbjct: 201  YISTNQIGVPMVFALKLTYPQPVTPWNFQELKQAVLNGPLKHPGATQVIMEDGRRVLLKN 260

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
            +   R SI ++L       + P  D +    GK+V RH++D DV+L+NRQP+LH+PSI A
Sbjct: 261  DLAQRESIAKQL-------LAPPFDWNPASPGKIVLRHIKDNDVMLLNRQPSLHRPSIQA 313

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H  R+L  EKTLR+HYANC  YNADFDGDEMN HFPQ+E++RAE YN+   + QY+ P +
Sbjct: 314  HRARILPKEKTLRLHYANCKAYNADFDGDEMNAHFPQNELARAEGYNLAATDYQYLVPKD 373

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            G PL  LIQDH++S  LLT +  F ++D++  L+YS+          T K G RV     
Sbjct: 374  GTPLAGLIQDHMISGVLLTMRGRFFHKDDYHLLVYSA---------LTDKRG-RV----- 418

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
              ++LP  P++ KP  +W+GKQV++ VL ++              LP++          +
Sbjct: 419  --KLLP--PSMLKPHVMWSGKQVLSTVLLNV--------------LPENATPLNLTGKSK 460

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND 758
             D K   +GK              +  +  G P           K  E++E +++I   +
Sbjct: 461  IDGKNWSQGK-------------ARDWLAGGTP----------LKGNEMTESEVVIMHGE 497

Query: 759  LVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLI 816
            L+ GV+DK  + +  YGLVH V E+YG   AG LL++L++LFT+FLQ  GFT GV+D+L+
Sbjct: 498  LLVGVLDKGHYGNTPYGLVHAVYEIYGGPAAGKLLTSLAKLFTIFLQFRGFTLGVEDILV 557

Query: 817  LKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGG---GDAAVA 873
             +   ++R+  +  +   G  V  +A  LE          + E+  A++      D  + 
Sbjct: 558  KEKANKKRRKVMKAAALSGPSVVAKAFHLEGSPS------EQELHDAVQAAHWSKDDELK 611

Query: 874  YFDMKM---TSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
              D+ M   T QL    + + I      GL K    N + LM  SGAKGS VN  QIS  
Sbjct: 612  DLDLSMKGNTDQLQNDIAKACI----PHGLHKIFPHNNLQLMVQSGAKGSSVNCMQISCL 667

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            LGQ ELEG+R P   SG++LPSF P+D +P+AGGFI  RFLTG+RPQEYYFHCMAGREGL
Sbjct: 668  LGQIELEGRRPPISFSGRSLPSFQPYDPSPKAGGFIATRFLTGIRPQEYYFHCMAGREGL 727

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV--------H 1042
            VDTAVKTSRSGYLQRC+IK+LE ++ISYD +VRD+DGS++QF YG D +D+        +
Sbjct: 728  VDTAVKTSRSGYLQRCIIKHLEGIQISYDLTVRDSDGSVLQFNYGGDSLDILKTPYLKSN 787

Query: 1043 QTSFI-----------------SKFDALAARER---------------GRGRGRNKFCDK 1070
            Q SF+                 S+ D  +A +                GR     K C +
Sbjct: 788  QYSFLIENEKALMNKEERKAVFSQMDCSSAEKHWGKLRKWKKKSKSQDGRSTAFLKLCKE 847

Query: 1071 G----SHTFVMGRNQEMIYKKCSGQLDASN-------AYIMELPD-------------AL 1106
                 +     GR+Q+ +   C    D S        AY    PD             ++
Sbjct: 848  SKVDSNGQCKNGRSQKTL-ALCQMWQDLSQDEKHKYAAYTGSGPDTVLSRFQPDRFIGSV 906

Query: 1107 KDNAEKFADKFL--------SNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPS 1158
             +N E+    ++        +  M+  DF +L+  + + S+  PGE VGLLA+QS+GEPS
Sbjct: 907  SENFERLIQDYVKVNPMKVSTQGMSTSDFKRLMYLRHLKSVVPPGEAVGLLAAQSIGEPS 966

Query: 1159 TQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            TQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP + CP+L
Sbjct: 967  TQMTLNTFHFAGRGEMNVTLGIPRLREILMVASDNIKTPNMECPVL 1012


>gi|393244933|gb|EJD52444.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Auricularia delicata TFB-10046 SS5]
          Length = 1718

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1088 (39%), Positives = 587/1088 (53%), Gaps = 170/1088 (15%)

Query: 210  PGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI---- 265
            P   DT  +  +   G V +   + + + S    P + +  I +L++NE E+C+ +    
Sbjct: 298  PEHPDTEKQLPRAADGRVKTARGRNERVVS----PEEARAHIRRLFKNEAEICALLFGRH 353

Query: 266  ---SDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIY 322
               + + ++G    +    FFL V+ V P +FR P + GD + EHP   LL+K+L  +  
Sbjct: 354  GPFAPLTREGLSPGSADQ-FFLEVLPVSPTRFRPPVEMGDQLFEHPHNELLTKILVTSYR 412

Query: 323  LANAYVNQPDNAKV------------------IVARWMNLQQSVNVLFDG-KNAAGQRD- 362
            L +  +     AKV                  ++   + LQ  VN   D  KN    R  
Sbjct: 413  LRD--ITNDMRAKVPDISAEAAAAAHTKLLGQMLETLIRLQDDVNSFIDSSKNPQPVRRG 470

Query: 363  --MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE 420
                 GI Q LEKKEGLFR+ +MGKRVNYA RSVISPD  +  NEIGIPP FA +LT+PE
Sbjct: 471  KLPPPGIKQGLEKKEGLFRKHMMGKRVNYAARSVISPDVNIDTNEIGIPPVFARKLTFPE 530

Query: 421  RVTPWNVVKLRDSIINGAEIHPGAT---------HYLDKLSTMRLPPNKKMRISIGRKLD 471
             VT  N +++   +  G   +PGA+         H LD ++        + R +I  +L 
Sbjct: 531  PVTALNFLEMHRLVKAGPREYPGASIVEFEDGTQHSLDAMTL-------EQRTAIANQLM 583

Query: 472  TSRG--AIVQP--GKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 527
            T +G   +  P  G  +      K VYRHL+DGD++++NRQPTLHKPS+MAH  +VLKGE
Sbjct: 584  TPQGNDRLGPPARGLQTQRTAVNKKVYRHLRDGDILILNRQPTLHKPSMMAHKAKVLKGE 643

Query: 528  KTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQ 587
            KT+RMHYANC++YNADFDGDEMN+HF Q++++RAEA  I N +NQY+ P++G PLR LIQ
Sbjct: 644  KTIRMHYANCNSYNADFDGDEMNIHFAQNQIARAEATFIANTDNQYLVPTSGKPLRGLIQ 703

Query: 588  DHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLP 647
            DH+V+   +T K+TF  R+E+ QLLY + +        TG+            E LP  P
Sbjct: 704  DHVVAGLWMTSKNTFFTREEYHQLLYGA-LRPEEDWMHTGR-----------IETLP--P 749

Query: 648  AIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKG 707
             IWKP+PLWTGKQVI+ +L +IT                       NA   S R K    
Sbjct: 750  TIWKPQPLWTGKQVISTILRNITPS---------------------NAHGISLRSK---- 784

Query: 708  KLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKA 767
                  K+ ++     K  V GK                 +EE+++    D++ GV+DK+
Sbjct: 785  -----CKISQELWADYKGPVWGKTQ---------------NEEEVIFLDGDMLCGVLDKS 824

Query: 768  QF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERK 825
            Q   +DYGL+H+  ELYG   AG LL   SRL T +LQ   FTC +DDL + +   + R+
Sbjct: 825  QLGASDYGLIHSAYELYGPEMAGRLLGIFSRLLTKYLQHRAFTCRMDDLALTEKGNKARE 884

Query: 826  NHLHGSEEIGKRVHLEALEL--EDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQL 883
              ++ +  +G    + +     E   E     L S + + +R   DA +A  D  +  Q 
Sbjct: 885  KLINDAWNMGHEATIASFPSLKELSPEEQDRTLPSLLREILR--DDAKMALLDNSV-KQR 941

Query: 884  NKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPR 943
             +  +SS+ NE + +GLL+    N +  MT SGAKGS VN +QIS  LGQQELEG+RVP 
Sbjct: 942  TQGLTSSIANECIPKGLLRKFPHNHMQAMTLSGAKGSAVNARQISCGLGQQELEGRRVPV 1001

Query: 944  MVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYL 1003
            MVSGKTLPSF  ++ A  AGG++  RFLTG+RPQE+YFHCMAGREGL+DTAVKTSRSGYL
Sbjct: 1002 MVSGKTLPSFKAFETAAIAGGYVASRFLTGVRPQEFYFHCMAGREGLIDTAVKTSRSGYL 1061

Query: 1004 QRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV----------------HQTSFI 1047
            QRCLIK+LE L++ YD++VR +D S+ QF YG DG+DV                H+ +  
Sbjct: 1062 QRCLIKHLEGLRVHYDHTVRGSDSSLFQFFYGGDGLDVTKQKHLMVDPVKPGEAHKVNLQ 1121

Query: 1048 SKF-----------------------DALAARERGRGRGRNKFCDKGSHTFVMGRNQEMI 1084
             +F                         L  +++ R        D  ++   +     + 
Sbjct: 1122 KRFMNYEFALQNFKSFVNRVRPVELVKMLGVKKKVRKHMEKALADPEAYDPTISTYNPVA 1181

Query: 1085 YKKCSGQLDASN--AYIMELPDAL----KDNAEKFADKFLSNEMAKQDFLKLVKHKFVLS 1138
            Y   + +  A +   YI + P  L      +A  F  K L N    + F   +  +++ S
Sbjct: 1182 YIGSTSERFARDLFEYIKKNPHKLIQDDSTDALHFPWKDLQN---AETFSHFMNARYIRS 1238

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
            LA PGE VGLLASQ +GEPSTQMTLNTFHLAG G  NVTLGIPRL+EI+  AS   KTP+
Sbjct: 1239 LADPGEAVGLLASQGIGEPSTQMTLNTFHLAGHGAANVTLGIPRLREIIMTASTKPKTPL 1298

Query: 1199 ITCPLLVG 1206
            +  PL  G
Sbjct: 1299 MHLPLQDG 1306



 Score = 86.3 bits (212), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 48/76 (63%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC  + F CPGHFGHI+L  PV++PL  N LY L++  C FCH FK SR  + K   K
Sbjct: 63  CATCRLQSFECPGHFGHIELPAPVFHPLFMNSLYNLIRSTCMFCHRFKLSREVLCKYAAK 122

Query: 61  LELIIKGDIIAAKSLD 76
           L L+  G + AA+ LD
Sbjct: 123 LRLLEYGLLQAAQDLD 138


>gi|422294084|gb|EKU21384.1| DNA-directed RNA polymerase I subunit RPA1 [Nannochloropsis gaditana
            CCMP526]
          Length = 1873

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1107 (38%), Positives = 573/1107 (51%), Gaps = 163/1107 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC      CPGH GH  L + VYNPL F +++  L+  CF CH F+ S         K
Sbjct: 71   CVTCNLSMRDCPGHMGHFPLSLHVYNPLTFGIVFQALRVKCFGCHGFRLSTFPCNVLALK 130

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
            L LI  G    A SLD  L    ++   S +   +   +         V    P+ W   
Sbjct: 131  LGLIDAGLAHEADSLDQAL--FRADLHRSTILRDTEMRLRRHLQTAGQV----PKSWIPG 184

Query: 121  QFAEAKLALLQ-FLK--IETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCN 177
            +    + AL++ FL+  +    C  C A    + K  +    + G      R       +
Sbjct: 185  ETKIKRRALIKDFLQEVLSCKTCDRCSAPKTTVRKDGYTKFFVRGRRAGHSRGAGAHIPS 244

Query: 178  LGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDL 237
                   G  E + G     D+    S  G       +  R   +G      G +     
Sbjct: 245  ALAVVRNGRHEVECGNGFGDDSDGEESEEGGGEEDAASQERFAARGGDTEAEGGEY---- 300

Query: 238  FSGPLLPSDVKDIIEKLWENEFELCSFI---SDMQQQGF-------GKKAGHSIFFLGVV 287
                + P++V+  ++ LWE E EL + I   + +++  F       G+  G    F  V+
Sbjct: 301  ----MAPAEVQMHMKLLWEAEPELATLIWGKAAVEKSVFSAPGADTGRADGWKTLFWRVL 356

Query: 288  LVPPIKFRLPSKGGD-SVMEHPQTVLLSKVLQANIYL------------ANAYVNQPDNA 334
             V P +FR PSK  D S+ EHPQ   + K++  +  +            A    N P  A
Sbjct: 357  PVTPSRFRPPSKNDDGSLAEHPQNYNVIKIMNLDERIRALLRKEDGGEGATGPENLPAEA 416

Query: 335  -KVIVARWMNLQQSVNVLFDGKNAAGQR----DMASGICQLLEKKEGLFRQKLMGKRVNY 389
               +++ W++LQ +VN   D    A  R    ++  GI Q LEKKEGLFR  +MGKRVN+
Sbjct: 417  LSRVLSTWIDLQNAVNGYIDSSKDANARLGGGNLTPGIRQGLEKKEGLFRMHMMGKRVNF 476

Query: 390  ACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLD 449
            ACRSVISPDPY+  +EIG+P  FA  LTY + VTP+N  +LR+++  GAE HPGA +  D
Sbjct: 477  ACRSVISPDPYIGTSEIGLPLRFAKVLTYSQPVTPFNAAQLREAVERGAEGHPGANYVED 536

Query: 450  ---KLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVN 506
               +L  +R       R+  GR+   +   +  PG+          V+RHLQDGD+VL+N
Sbjct: 537  ARGRLIDLR-------RMDAGRRRALAARLLTPPGQ---------TVWRHLQDGDMVLMN 580

Query: 507  RQPTLHKPSIMAHVVRVLK--GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAY 564
            RQPTLHKP IMAH  RVL+   ++T+RMHYANC+TYNADFDGDEMN HFPQDE+SRAEA 
Sbjct: 581  RQPTLHKPGIMAHRARVLRSPAQQTIRMHYANCNTYNADFDGDEMNCHFPQDELSRAEAE 640

Query: 565  NIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGS 624
             I   + QY+ P+NG PLR LIQDH+ S   LT KD FL+R +F  +L+          +
Sbjct: 641  TIACTDEQYLAPTNGKPLRGLIQDHVGSGVKLTGKDCFLSRADFQHILFC---------T 691

Query: 625  FTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKL 684
             +G PG  V+       +    PAIWKP+ LWTGKQ+I+ +L H++ G PP  ++   K 
Sbjct: 692  LSGLPGVEVVPPYG--HIYMPAPAIWKPQELWTGKQMISVLLQHLSEGLPPLNLDFKAKT 749

Query: 685  PQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKE 744
            P       F  D++                                              
Sbjct: 750  P----AVAFGVDQE---------------------------------------------- 759

Query: 745  KELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFL 802
                E ++++   DL+RGV+DKA F  ++ GLVH V E YG   AG LL+AL RLFTV+L
Sbjct: 760  ----EHEVVVRGGDLIRGVLDKAAFGASEGGLVHGVYEFYGPRFAGRLLTALGRLFTVYL 815

Query: 803  QMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHL-----EALEL------------ 845
            Q  G TCGV+DL++ +  E+ R+  +  +  +G           A E             
Sbjct: 816  QFAGHTCGVEDLVLSRAAEQRRRALITRAGRLGGLAMYCYTSGTAFEPPPLPPLPSASGQ 875

Query: 846  --EDGAEIDPI----------KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVIN 893
              +DGA  D +          +    +E+ MR G     A  D  M + L+   SS +I 
Sbjct: 876  AEKDGASADGLSAADLARVQARTAELLEEDMRTGQVTQAAAIDNFMRTVLSP-VSSDIIK 934

Query: 894  ELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSF 953
              L +GL KP   N  SLM ++GAKGS VN  QIS  LGQQELEG+RVP M SGK+LPSF
Sbjct: 935  ACLPDGLTKPFPHNAFSLMVSTGAKGSTVNQSQISCGLGQQELEGRRVPLMPSGKSLPSF 994

Query: 954  HPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLEC 1013
             P+D +PRAGGFI+DRFLTG+RPQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL+K LE 
Sbjct: 995  PPYDPSPRAGGFIVDRFLTGVRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLVKGLEE 1054

Query: 1014 LKISYDYSVRDADGSIVQFCYGEDGVD 1040
            L++ YD +VRDAD  +VQF YGEDGVD
Sbjct: 1055 LRVHYDNTVRDADAGVVQFLYGEDGVD 1081



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 70/111 (63%), Gaps = 6/111 (5%)

Query: 1093 DASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQ 1152
            DA   Y+   P+ L   +E    K      +K     L+  K++ SL  PGE VG +A Q
Sbjct: 1287 DAIEDYLGRDPEHLFQKSEMGGSK------SKAGLELLLWLKYMRSLTSPGEAVGSIAGQ 1340

Query: 1153 SVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            S+GEPSTQMTLNTFHLAG G  NVTLGIPRL+EI+  AS++ KTP +T PL
Sbjct: 1341 SIGEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTASRNPKTPSMTVPL 1391


>gi|302418908|ref|XP_003007285.1| DNA-directed RNA polymerase I subunit RPA1 [Verticillium albo-atrum
            VaMs.102]
 gi|261354887|gb|EEY17315.1| DNA-directed RNA polymerase I subunit RPA1 [Verticillium albo-atrum
            VaMs.102]
          Length = 1686

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1017 (40%), Positives = 562/1017 (55%), Gaps = 152/1017 (14%)

Query: 246  DVKDIIEKLWENEFELCSFISDMQQQGFGKKAGH---SIFFLGVVLVPPIKFRLPSKGGD 302
            +V++ + +L++ E E+ S + +   +   KKAG     +FFL  +LVPP +FR  ++ GD
Sbjct: 312  EVRERLRELFDKEQEVLSLVYN--SKPLKKKAGKVSADMFFLQTLLVPPNRFRPEARTGD 369

Query: 303  S-VMEHPQTVLLSKVLQ-----ANIYLANAYVNQPDNAKVIV---ARWMNLQQSVNVLFD 353
            S + E  Q  L   VL+     A ++ +         A+ +      W +LQ +VN L D
Sbjct: 370  SEISEAQQNSLYKLVLRSCGTIARVHQSIGGATTERRARTMTDLHQAWTDLQNAVNSLID 429

Query: 354  -GKN----AAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGI 408
              KN    AA +R+   GI Q LEKKEGLFR+ +MGKRVN+A RSVISPDP +  NEIG+
Sbjct: 430  KDKNPVMGAAAKRN-EEGIKQKLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGV 488

Query: 409  PPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGAT--HYLDKLSTMRLPPNKKMRISI 466
            PP FA +LT+PE VT  N   ++ ++ING +  PGA    Y +   T     +   RIS+
Sbjct: 489  PPVFARKLTFPEPVTSHNFRDMQRAVINGVDKWPGAAAIEYENGQITNLRGKSADDRISL 548

Query: 467  GRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKG 526
              +L       + P   + +    K VYRHL +GDVVL+NRQPTLHKPSIM H VRVL G
Sbjct: 549  ANQL-------LAPTDSNTSGVRNKKVYRHLTNGDVVLMNRQPTLHKPSIMGHRVRVLPG 601

Query: 527  EKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLI 586
            EKT+RMHYANC+TYNADFDGDEMN+HFPQ+EV+RAEA  I + ++QY+  + G PLR LI
Sbjct: 602  EKTIRMHYANCNTYNADFDGDEMNMHFPQNEVARAEALQIADTDHQYLSGTAGKPLRGLI 661

Query: 587  QDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLL 646
            QDHI  +  L  +D+F  R +F QL+Y++    SG           +L  R   E++P  
Sbjct: 662  QDHISVSVSLCSRDSFFTRGDFQQLVYAALRPESG----------HILGER--LELVP-- 707

Query: 647  PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDK 706
            PAI KP P WTGKQVIT +L +I   +PP                             + 
Sbjct: 708  PAIIKPVPRWTGKQVITTILKNI---KPP---------------------------TGEG 737

Query: 707  GKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +S   +   D+ GK  E                       E  +L      + G++DK
Sbjct: 738  IWMSGKTQTPADRWGKGSE-----------------------EGIVLFQDGHFLHGILDK 774

Query: 767  AQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
            A    +  GL+H+V E+YG   AG LLS+L RL T +  M  FTCG+DDL +  + E+ R
Sbjct: 775  AHLGPSSGGLIHSVHEVYGPAIAGKLLSSLGRLLTRYSNMRAFTCGMDDLRLTPEGEQTR 834

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSE----IEKAMRGGGDAAVAYFDMKMT 880
            +  L  + +IG +V  + + L D    +P    +E    +E+ MR   D      DM M 
Sbjct: 835  RETLREASDIGLQVATKYVSLGDS---NPTSTDAELLVRLEEVMR--DDNKQEGLDMLM- 888

Query: 881  SQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKR 940
            +Q +   S ++    L  GL+K   KN +  MT SGAKG  VN   IS +LGQQ LEG+R
Sbjct: 889  NQRSGELSQAITKACLPSGLVKQFPKNQMQAMTVSGAKGGPVNANLISCNLGQQVLEGRR 948

Query: 941  VPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRS 1000
            VP MVSGK+LP F P+D + RAGG+I+ RFLTG+RPQEYYFH MAGREGL+DTAVKTSRS
Sbjct: 949  VPLMVSGKSLPCFKPFDSSVRAGGYIVQRFLTGIRPQEYYFHHMAGREGLIDTAVKTSRS 1008

Query: 1001 GYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKF---------- 1050
            GYLQRC+IK +E L +SYD +VRDADG+++QF YGEDG+D  +  +++ F          
Sbjct: 1009 GYLQRCIIKGMEGLTVSYDSTVRDADGTLIQFLYGEDGLDPTKQKYLTDFGFILRNIESE 1068

Query: 1051 --------------------------DALAARERGRGRGRNKFCDKGSHTFVMGRNQEMI 1084
                                       A+   + G+  G++      +   V     E  
Sbjct: 1069 SAQLGFSSDFRETLAGNKDSILKHMKSAIKHAKAGKVGGKDPVISMVNPARVAFATSEKF 1128

Query: 1085 YKKCSGQLDASNAYIMELPDAL-KDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPG 1143
            Y+  +        YI E  D L ++  EK         ++K+    ++  K++ SL + G
Sbjct: 1129 YESMT-------EYIKENKDGLVREKGEKRPATSFIPSVSKKSAELVLAAKYMRSLVEAG 1181

Query: 1144 EPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
            E VG++A QS+GEPSTQMTLNTFHLAG    NVTLGIPRL+EIL  ASK I TP +T
Sbjct: 1182 EGVGIVAGQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASKTISTPSMT 1238



 Score = 66.6 bits (161), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 43/76 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC   Q  CPGH GHI+L VPVY+P+  + +  LL+  C +C   +  +R+V     K
Sbjct: 62  CSTCNLNQSSCPGHAGHIELPVPVYHPVFLDQVLRLLRAQCVYCKGLRLRQRDVHLYSCK 121

Query: 61  LELIIKGDIIAAKSLD 76
           L L+  G + AA  +D
Sbjct: 122 LRLLQHGLLRAAHLID 137


>gi|71015094|ref|XP_758775.1| hypothetical protein UM02628.1 [Ustilago maydis 521]
 gi|46098565|gb|EAK83798.1| hypothetical protein UM02628.1 [Ustilago maydis 521]
          Length = 1795

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1181 (37%), Positives = 614/1181 (51%), Gaps = 224/1181 (18%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC    + CPGHFGHI+L  PV++PL    ++ LL+  CF+CH F+     + K + +
Sbjct: 63   CSTCHLNSYQCPGHFGHIELPSPVFHPLFMGNMFNLLRGTCFYCHRFRLPLVVLTKVIGR 122

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCS---------------------- 98
            L L+  G +  A++++ + P  ++   D D ++  S                        
Sbjct: 123  LRLLEYGLVDDAENIEAEEPRSNTKLTDIDNADGESTDEDGDDAKGSKGSKASSSKSRGS 182

Query: 99   -MVTP-----RGNYDNVRNL--------KPQ---EWTSLQFAEAKLALLQFLK-IETTKC 140
               TP     R N   V+ L        K Q   E  SL +   K  + +F+K I   +C
Sbjct: 183  SGETPAEFAHRIN-QQVKELIKAAKASGKAQMEPEAGSLAYTARKKCINEFMKDIHRRQC 241

Query: 141  GNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRG-CNLGETFSGGEEEKDLGASSDVDA 199
            G C A +P + +  F  I    +  A++ +N  +G   +         E+ L AS+   +
Sbjct: 242  GQCNAISPTVRRDGFLKIMEKALLPAEVASNEHKGYMRVSPVKRVAAIERRLAASTASTS 301

Query: 200  PETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPS-DVKDIIEKLWENE 258
              T + +     +Q  +A    KG+            ++   ++P+ + +  +  L+ NE
Sbjct: 302  ASTDAVDDAGLASQAISAENAPKGT------------VYR--VMPAVECQAHLRLLFHNE 347

Query: 259  FELCSFISDMQQQGFGK---------------KAGHSI-----------FFLGVVLVPPI 292
              LCS I       FG+               K G SI           FF+ V+ VPP 
Sbjct: 348  GPLCSLI-------FGRNGPFRLGNSEGKVKAKVGSSIWSTPNGASADSFFVSVLAVPPT 400

Query: 293  KFRLPSKGGDSVMEHPQTVLLSKVLQANIYL----------------------------- 323
            +FR  S  GD   E+ Q  LL+ VL+    +                             
Sbjct: 401  RFRPASIMGDMTFENSQNELLTNVLKTTFSIRDQITELTRLVSKKDFPELGPDASEADYR 460

Query: 324  ---ANAYVNQPDNAKVIVARWMNLQQSVNVLFDG-KNAAGQRD---MASGICQLLEKKEG 376
               A     + D  + ++   M LQ  VN   D  KN    R       G+ Q LEKKEG
Sbjct: 461  AAEAQLIKGREDTRRKVLNSMMQLQVDVNSFIDASKNPMPLRQGQLPPPGVKQGLEKKEG 520

Query: 377  LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
            LFR+ +MGKRVN+A RSVISPD  +  NEIG+PP FA +LTYPE VT  NV  +R  +IN
Sbjct: 521  LFRKHMMGKRVNFAARSVISPDVNIETNEIGVPPVFARKLTYPEPVTVHNVQLMRQLVIN 580

Query: 437  GAEIHPGATHY---------LDKLSTMRLPPNKKMRISIGRKLDT--------SRGAIVQ 479
            G   +PGA            LDKLS        + R ++  +L T        +RG    
Sbjct: 581  GPFKYPGAVAIRSEDGTETQLDKLSV-------EERTALANQLLTPQEHSSKQARGTFAG 633

Query: 480  PGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 539
             G  +      K V RHL+DGD++L+NRQPTLH+PS+MAH  RVL GEKT+RMHYANC++
Sbjct: 634  LGSSTRTPIANKQVLRHLRDGDILLLNRQPTLHRPSMMAHKARVLVGEKTIRMHYANCNS 693

Query: 540  YNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
            YNADFDGDEMN+HFPQ + +RAE Y + N +NQY+ P++G+PLR LIQDH+V+   +T K
Sbjct: 694  YNADFDGDEMNMHFPQSQAARAECYYVANTDNQYLTPTSGNPLRGLIQDHVVAGVWMTSK 753

Query: 600  DTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
            +T   R E+ Q+LY +       G +TG  G RVL        +P  PA+ KPEPLWTGK
Sbjct: 754  NTLYTRAEYQQMLYGALRPE---GKYTG--GGRVL-------TVP--PALLKPEPLWTGK 799

Query: 660  QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
            QVI+ VL ++   +P                            K D   L+   K+    
Sbjct: 800  QVISTVLLNL---KP---------------------------AKADGLNLTSKAKVAGRM 829

Query: 720  SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHT 777
             GK                 + S+EK      ++I   +L++GV+DKA F  + +GLVH 
Sbjct: 830  WGK----------------DHASEEK------VIIEDGELLQGVLDKAAFGASSFGLVHA 867

Query: 778  VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKR 837
            + E+YGS TAG LLS LSRLFT FLQ + F+C +DDLL+ K+ +  R+  L  ++  GK 
Sbjct: 868  IFEIYGSETAGKLLSILSRLFTKFLQTNAFSCRMDDLLLSKEGDEWRRTTLDAAKNQGKG 927

Query: 838  VHLEALELEDGAEIDP---IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINE 894
            V ++ + LE   E +P     L+  +E+ +R   D  +A  D +M +  N  T S +I  
Sbjct: 928  VAMKTVGLEGEDEKNPDTDRNLRIRLEEVLR--DDDKLAVLDGEMMNSSNALT-SKIIES 984

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
             L  GL K   +N + +MT SGAKGS VN  QIS  LGQQ LEG+RVP MVSGK+LPSF 
Sbjct: 985  CLPAGLYKKFPENNMQMMTGSGAKGSAVNVSQISCLLGQQALEGRRVPLMVSGKSLPSFR 1044

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
            P++ + RAGGF+  RFLTG+RPQEY+FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE +
Sbjct: 1045 PFETSARAGGFVSGRFLTGIRPQEYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGV 1104

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAA 1055
             I YD +VR+ADGS++QF YGED +D  ++ +I +FD  AA
Sbjct: 1105 HIQYDNTVRNADGSVLQFNYGEDALDTTKSKYIGQFDFTAA 1145



 Score =  104 bits (259), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 64/93 (68%)

Query: 1116 KFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMN 1175
            +F   ++  + F  + K  +   L  PGE VGLLA+Q VGEPSTQMTLNTFH AG G  N
Sbjct: 1245 RFAKEKLGVEAFRAMCKVLYHRGLVDPGEAVGLLAAQGVGEPSTQMTLNTFHFAGHGAAN 1304

Query: 1176 VTLGIPRLQEILTIASKDIKTPVITCPLLVGKT 1208
            VTLGIPRL+EI+  AS+ IKTP++  P+L G T
Sbjct: 1305 VTLGIPRLREIVMTASQHIKTPIMRLPVLDGIT 1337


>gi|367035594|ref|XP_003667079.1| hypothetical protein MYCTH_2312447 [Myceliophthora thermophila ATCC
            42464]
 gi|347014352|gb|AEO61834.1| hypothetical protein MYCTH_2312447 [Myceliophthora thermophila ATCC
            42464]
          Length = 1721

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/1016 (40%), Positives = 565/1016 (55%), Gaps = 143/1016 (14%)

Query: 246  DVKDIIEKLWENEFELCSFISDMQQQGFGKKA-GHSIFFLGVVLVPPIKFRLPSKGGDS- 303
            +V   +E L+E E E+ S + + + +    K     +FF+  +LVPP ++R  ++ GDS 
Sbjct: 347  EVHKRLELLFEKEQEILSLLYNSKPRPRNSKPLTADMFFITALLVPPNRYRPEARMGDSQ 406

Query: 304  VMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA--------------RWMNLQQSVN 349
            + E  Q  L   +L++   +A          K   A               W  LQ +VN
Sbjct: 407  ISEAQQNNLYKMILRSASNVAQISREISSQTKETAADEGRRTRDMSSLYQAWTELQDAVN 466

Query: 350  VLFDG-----KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVN 404
             L D      + AA +R+   GI Q LEKKEGLFR+ +MGKRVN+A RSVISPDP +  N
Sbjct: 467  SLIDRDKNPIQGAAAKRN-EEGIKQKLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETN 525

Query: 405  EIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM-- 462
            EIG+PP FA +LTYPE VT  N   L+ ++ING +  PGA+   ++   +     K +  
Sbjct: 526  EIGVPPVFAKKLTYPEPVTSHNFKDLQQAVINGVDKWPGASAIENENGQIINLRTKSLED 585

Query: 463  RISIGRKLDTSRGAIVQPGKDSDNEFEG---KMVYRHLQDGDVVLVNRQPTLHKPSIMAH 519
            RI++  +L    G          N F G   K V+RHL +GDVVL+NRQPTLHKPSIM H
Sbjct: 586  RIALANQLLAPTG----------NNFSGQRNKKVHRHLTNGDVVLMNRQPTLHKPSIMGH 635

Query: 520  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNG 579
             VRVL GEKT+RMHYANC+TYNADFDGDEMN+HFPQ+E++R EA  + + ++QYV  + G
Sbjct: 636  RVRVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPQNELARVEALQLADTDHQYVSGTAG 695

Query: 580  DPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSE 639
            +PLR LIQDH+  +  L  KD FL++  + QL+YS+    SG  +     G+R+      
Sbjct: 696  NPLRGLIQDHLSVSVELCSKDVFLDQGAYHQLIYSALRPESGHIT-----GERI------ 744

Query: 640  QEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQS 699
             E++P  PA+ KP   WTGKQVIT +L +I   RP                         
Sbjct: 745  -ELVP--PAVIKPVSRWTGKQVITTILKNI---RPA------------------------ 774

Query: 700  DRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDL 759
                 D G L        + S K K    G+  EE +               ++    + 
Sbjct: 775  -----DCGNL------WMNGSAKIKSRSWGEDSEEGQ---------------VMFRDGEF 808

Query: 760  VRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLIL 817
            + G++DK+Q   +  G VH V E+YG + AG LLS++ RL T +L M  FTCG+DDL + 
Sbjct: 809  ISGILDKSQLGPSSGGFVHAVHEIYGPSVAGKLLSSMGRLLTRYLAMIAFTCGMDDLRMT 868

Query: 818  KDKERERKNHLHGSEEIGKRVHLEALELEDG--AEIDPIKLKSEIEKAMRGGGDAAVAYF 875
               E++R+  +  + +IG RV  + + LE+    + DP+ L+   E          +   
Sbjct: 869  PQGEKDRRETIRAAADIGLRVAAKYVSLEEQKPTKDDPLLLERLEEVLRDDKKQEGLEL- 927

Query: 876  DMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQE 935
               +TS      SS +    L  GL K   KN +  MTTSGAKGS VN   IS +LGQQ 
Sbjct: 928  ---LTSHALADLSSEITRLCLPAGLEKQFPKNHMQSMTTSGAKGSPVNANLISCNLGQQV 984

Query: 936  LEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAV 995
            LEG+RVP MVSGKTLPSF P+D   RAGG+I++RFLTG+RPQEYYFH MAGREGL+DTAV
Sbjct: 985  LEGRRVPVMVSGKTLPSFKPFDTDVRAGGYIVNRFLTGIRPQEYYFHHMAGREGLIDTAV 1044

Query: 996  KTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAA 1055
            KTSRSGYLQRCLIK +E L++SYD SVRD+DGS+VQF +GEDG+D+ +  +++ F+    
Sbjct: 1045 KTSRSGYLQRCLIKGMEGLRVSYDSSVRDSDGSVVQFLFGEDGIDISKQKYLNDFE-FVL 1103

Query: 1056 RERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNA------YIMEL-PDALK- 1107
            R       + ++ + G+      +++ M  K+    + +SN          EL P A   
Sbjct: 1104 RNLDSQLPQIRYHEPGTQALFEHKDEVM--KRMKSAIRSSNTRNPLDPVTAELDPSAFAF 1161

Query: 1108 DNAEKFADKFLSNEMAKQDFL--------------------KLVKHKFVLSLAQPGEPVG 1147
              +EKF  K +      +D L                    K++  K++ SL +PGE VG
Sbjct: 1162 ATSEKFYTKMMDYVKTNKDGLIKDKKGPEKQQGLIARKTAEKILAAKYIRSLVEPGEAVG 1221

Query: 1148 LLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            ++A QSVGEPSTQMTLNTFHLAG    NVTLGIPRL+EIL  AS    TP +T  L
Sbjct: 1222 IVAGQSVGEPSTQMTLNTFHLAGHSARNVTLGIPRLREILMTASTKPSTPSMTLVL 1277



 Score = 73.6 bits (179), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 44/76 (57%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TC   Q  CPGH GHI+L VPVY+P+  +  Y LL+  C +CH F+  R E+ K    
Sbjct: 62  CRTCNLNQAQCPGHPGHIELPVPVYHPVFMDQAYRLLRAQCVYCHKFRLPRHEIHKYTCM 121

Query: 61  LELIIKGDIIAAKSLD 76
           L L+  G +  A  ++
Sbjct: 122 LRLLQVGLVHEANMIE 137


>gi|260940725|ref|XP_002614662.1| hypothetical protein CLUG_05440 [Clavispora lusitaniae ATCC 42720]
 gi|238851848|gb|EEQ41312.1| hypothetical protein CLUG_05440 [Clavispora lusitaniae ATCC 42720]
          Length = 1248

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/899 (42%), Positives = 528/899 (58%), Gaps = 116/899 (12%)

Query: 341  WMNLQQSVNVLFDG---KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
            ++ +Q  VN   D    +NA   +    GI Q LEKKEGLFR+ +MGKRVNYA RSVISP
Sbjct: 4    FVTIQNDVNAFIDSTKNQNAQAGKMPVPGIKQALEKKEGLFRKHMMGKRVNYAARSVISP 63

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM--R 455
            DP L  NEIG+PP FA++LTYPE VT +NV +LR ++ING +  PGA    ++  +M   
Sbjct: 64   DPNLETNEIGVPPVFAVKLTYPEPVTAYNVAELRQAVINGPDKWPGAIQVQNEDGSMVSL 123

Query: 456  LPPNKKMRISIGRKLDT-SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKP 514
            +    + R +I  +L T S GA V            K V+RH+++ DVV++NRQPTLHK 
Sbjct: 124  IGMTLEQRKAIANQLLTPSNGATVI----------NKKVHRHIKNKDVVIMNRQPTLHKA 173

Query: 515  SIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYV 574
            S+M H VRVL GEKTLR+HYAN   YNADFDGDEMN+HFPQ+E ++AEA N+ N ++QY+
Sbjct: 174  SMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQNENAKAEALNLANTDSQYL 233

Query: 575  RPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVL 634
             P++G PLR LIQDHI +   LT KD+F  R+++ QL+Y         G    + G    
Sbjct: 234  TPTSGSPLRGLIQDHISAGVWLTNKDSFFTREKYQQLIY---------GCIRPEDGH--- 281

Query: 635  ISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT-RGRPPFVVERGGKLPQDFFKTRF 693
             +     ++ + PA++KPEPLWTGKQVIT +L +I  +G P   +    K+  D++    
Sbjct: 282  -TNGATRIVTVPPAVFKPEPLWTGKQVITTILLNIKPKGVPGINLVSKNKIKDDYW---- 336

Query: 694  NADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLL 753
                         GK S+ N                                     ++L
Sbjct: 337  -------------GKGSREN-------------------------------------EVL 346

Query: 754  IYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
                +L+ G++DK+Q+  + YG+VH++ E+YG +TA   LS L RLFT ++ M  FTCG+
Sbjct: 347  FRNGELLSGILDKSQYGASAYGIVHSLHEVYGPDTASKALSVLGRLFTNYIMMTAFTCGM 406

Query: 812  DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAA 871
            DDL +  +    RK+ L  S +IG+    E   L+        +L   +E+ +R    + 
Sbjct: 407  DDLRLTDEGNAWRKDILKQSVDIGRAAACEVTNLDSSTTSSDSELLKRLEEILRDDNKSG 466

Query: 872  VAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHL 931
            +   D    S++N  T S V+++ + +G +K    N +  M  SGAKGS VN  QI   L
Sbjct: 467  I--LDAITQSKVNAIT-SQVVSKCVPDGTMKRFPYNSMQAMALSGAKGSGVNVSQIMCLL 523

Query: 932  GQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLV 991
            GQQ LEG+RVP MVSGKTLPSF P++   RAGG+I  RF +G+RPQEYYFHCMAGREGL+
Sbjct: 524  GQQALEGRRVPVMVSGKTLPSFKPYETDARAGGYIKGRFYSGIRPQEYYFHCMAGREGLI 583

Query: 992  DTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISK-- 1049
            DTAVKTSRSGYLQRCL K LE + +SYD SVRD DGS++QF YG D VD  + S +++  
Sbjct: 584  DTAVKTSRSGYLQRCLTKQLEGIHVSYDNSVRDGDGSLLQFLYGGDAVDTTKQSHMNQYK 643

Query: 1050 -----FDALAARERGRGRGRNKFCDKG-SHTFVMGRN----QEMIYKKCSGQLD------ 1093
                 +DAL A+        +   D   S++  + +N    +++ +   S + D      
Sbjct: 644  FCLDNYDALLAKYNPGELTEHLDTDTALSYSKKVRKNLKKQKDLPHYNQSTKYDPVLSVF 703

Query: 1094 --------ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEP 1145
                     S  +  +L D +  +++ FA K  S+ ++++ F  L++ K++ SL  PGE 
Sbjct: 704  NPAKYLGAVSEKFQEKLDDFVNQHSDLFA-KHSSDGVSEKKFRALMQLKYMRSLIHPGES 762

Query: 1146 VGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            VG++A+QS+GEPSTQMTLNTFH AG G  NVTLGIPR++EI+  AS  IKTP +T PLL
Sbjct: 763  VGIIAAQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASASIKTPQMTLPLL 821


>gi|302503366|ref|XP_003013643.1| hypothetical protein ARB_00090 [Arthroderma benhamiae CBS 112371]
 gi|291177208|gb|EFE33003.1| hypothetical protein ARB_00090 [Arthroderma benhamiae CBS 112371]
          Length = 1642

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/1235 (36%), Positives = 641/1235 (51%), Gaps = 157/1235 (12%)

Query: 41   CFFCHHFKASRREVEKCVRKLELIIKGDIIAAKSL-DLDLPSES---SNPEDSDVSNKSS 96
            C +CH F+ SR +V     KL L+  G I  A  + +++L   +    +  D D  ++  
Sbjct: 65   CIYCHRFRMSRAQVNTYSCKLRLLQYGLIEEAHIVGNMELRKGARGKDDSSDDDSDDEDD 124

Query: 97   CSMVTPRGNYDN--VRNLKPQEWTSLQF--------AEAKLALLQ-FLK--IETTKCGNC 143
             S++  R  Y    + NL   + +            AE + +L++ FL+      KC +C
Sbjct: 125  VSLIQRRNAYVKRCIANLPVHKRSRSHMELVKDPTAAEMRRSLVRDFLREACAVKKCTSC 184

Query: 144  KAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGA---SSDVDAP 200
               +P   +  +  I    +P     A +  G  +       EE   L       D  A 
Sbjct: 185  SGISPAYRRDKYSKIFRKSLPQKAKIAMMEAGFQIPNPLVLMEEASRLSQRQKDGDKTAK 244

Query: 201  ETHSFNGTFPGTQDTAARRHQKGSGAV----PSGFKKQKDLFSGPLLPS-DVKDIIEKLW 255
            +T S +      Q  A ++   G+  +         +  D+ S   +PS ++   +  L+
Sbjct: 245  QTESLDDD---DQPNAEQQISVGNTMLMDVEEDAMTQVGDIESQQYVPSSEIYASLHFLF 301

Query: 256  ENEFELCSFISDMQQQGFGKKAGH---SIFFLGVVLVPPIKFRLPSKGG-DSVMEHPQTV 311
              E E+   I D   + F KK  H   ++FF+  +LVPP KFR  ++ G + +ME  Q  
Sbjct: 302  NKEQEILDLIYD--SRPFVKKRSHISANMFFIKNILVPPNKFRPAAQQGPNEIMEAQQNT 359

Query: 312  LLSKVLQANIYLANAYVNQPDNAKVIVAR---WMNLQQSVNVLFDGKNAAGQRDM----- 363
               ++++    +      +  +      R   + +L Q++  L D  N+   RD      
Sbjct: 360  SFGRIIKLCDQINQISRERQGDTTGTSRRIRDYRDLLQAIVQLQDAVNSLIDRDRNPSQG 419

Query: 364  -----ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTY 418
                   GI Q LEKK+GLFR+ +MGKRVN+A RSVISPDP +  NEIGIP  FA +LTY
Sbjct: 420  LGAQNEDGIKQRLEKKDGLFRKNMMGKRVNFAARSVISPDPNIETNEIGIPLVFAKKLTY 479

Query: 419  PERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAI- 477
            PE VT  N  +L+ ++ING +I+PGA    ++L  +         +S+  K    R AI 
Sbjct: 480  PEPVTNHNYWELKQAVINGPDIYPGAAAVENELGQV---------VSLKFKTVDERVAIA 530

Query: 478  ---VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY 534
               + P          K VYRHL  GDVVL+NRQPTLHKPSIM H  RVL GE+T+RMHY
Sbjct: 531  NLLLSPSNWKLKRSRNKRVYRHLTTGDVVLMNRQPTLHKPSIMGHRARVLTGERTIRMHY 590

Query: 535  ANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAA 594
            ANC+TYNADFDGDEMN+HFPQ+E++RAEA  + + ++QY   ++G PLR LIQDH+    
Sbjct: 591  ANCNTYNADFDGDEMNMHFPQNEIARAEAMQLADTDHQYFVATSGKPLRGLIQDHLSMGV 650

Query: 595  LLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEP 654
             LT +D+F + D++ QLLYS             +P     +S    ++  + PAI+KP+P
Sbjct: 651  WLTCRDSFFDEDDYHQLLYS-----------CLRPENSHTVS---DKIWLMPPAIFKPQP 696

Query: 655  LWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNK 714
            LWTGKQ+I+ VL +IT         R G           N D +S               
Sbjct: 697  LWTGKQIISTVLKNITPD------NRAG----------LNLDSKS--------------S 726

Query: 715  MHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY-- 772
               D+ G K E      GE                  + +   +L+ G++DK+Q      
Sbjct: 727  TPGDRWGDKAE------GE------------------VTVRDGELISGILDKSQLGPTVG 762

Query: 773  GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSE 832
            GL+H++ E+YG   AG L+  L RL T  L M  FTCG+DDL + ++   +RK  +  ++
Sbjct: 763  GLIHSIHEVYGHIVAGKLIGILGRLLTKVLHMRAFTCGMDDLRLTEEGNAKRKELIQQAD 822

Query: 833  EIGKRVHLEALEL-EDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSV 891
            ++GK + L+ + L E+  E +  +L+  +E+ +R   D   A  D    S+  +  SS +
Sbjct: 823  DLGKEISLKYVTLDENKVEDEDTELQRRLEEVLR--DDDKHAGLDAMYKSRAGE-LSSEI 879

Query: 892  INELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLP 951
                L  GL KP   N +  MT SGAKGS VN   IS +LGQQ LEG+RVP M+SGKTLP
Sbjct: 880  TKACLPSGLEKPFPFNNMQTMTVSGAKGSMVNANLISCNLGQQVLEGRRVPVMISGKTLP 939

Query: 952  SFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 1011
            SF P++    AGG++  RFLTG++P EYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +
Sbjct: 940  SFQPFETKIGAGGYVFGRFLTGIKPHEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGM 999

Query: 1012 ECLKISYDYSVRD-ADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDK 1070
            E LK  YD SVRD +DGSIVQF YGEDG+D+ +   +  F  LA          N   D 
Sbjct: 1000 EGLKAEYDTSVRDTSDGSIVQFLYGEDGLDITKQKHLDSFSFLAQNYMSIVSQVNGVNDS 1059

Query: 1071 GS-HTFVMGRNQEMIYKKC--SGQLDASNAYIMELPDALK--DNAEKFAD---KFLSN-- 1120
               H+       +   KK   +G+++A +  +   P        +EKF+    K+L +  
Sbjct: 1060 SKIHSDEASSWSKAALKKIKKTGKIEAKDPALAHFPPGANYGSTSEKFSSALKKYLKSNP 1119

Query: 1121 ------------EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHL 1168
                        E+ K+ F  ++  K++ S+  PGE +G++A QSVGEPSTQMTLNTFHL
Sbjct: 1120 DNLLKDKSTGEGEITKKAFTTMMNMKYMKSVIDPGEAIGIVAGQSVGEPSTQMTLNTFHL 1179

Query: 1169 AGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            AG    NVTLGIPRL+EI+  AS  I TP +T  L
Sbjct: 1180 AGHAAKNVTLGIPRLREIVMTASSHIMTPTMTLKL 1214


>gi|403353481|gb|EJY76278.1| DNA-directed RNA polymerase [Oxytricha trifallax]
          Length = 1815

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1193 (35%), Positives = 606/1193 (50%), Gaps = 222/1193 (18%)

Query: 140  CGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDL-------- 191
            C +C+ K+P   K  +    M   P +D   N ++  +     S    +KD         
Sbjct: 260  CPHCQEKSPSFRKDGYTKFFMK--PLSDKIKNQMKQQDRLTKGSSKHSQKDTDIEGFDII 317

Query: 192  ---GASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLL-PSDV 247
                 +  +   E+H+ + T   +QD  ++                +++    LL  ++V
Sbjct: 318  NDASTTGALSRKESHNDHTTVISSQDQYSQSGVNFDDEEEEEDDDLENMTHQRLLCQNEV 377

Query: 248  KDIIEKLWENEFELCSFISDMQQQGFGK-------------KAGHSIFFLGVVLVPPIKF 294
            +D +  +W NE  L   +       FG+               G  +FFL  +LVPP +F
Sbjct: 378  QDHLIHMWRNEKALLDIM-------FGRFYPVEDGQPLENDSLGPQMFFLKKLLVPPNRF 430

Query: 295  RLPSKGG---------DSVMEHPQTVLLSKVLQANIYLANAYVNQPD-----------NA 334
            R  S+G          D    H  + ++ K+L  N+ L +A ++Q              +
Sbjct: 431  RPESQGAFGGAGGGQGDKAYLHAHSAMVQKILVNNLALKDAILHQDQLRQQTGSQDTKAS 490

Query: 335  KVIVARWMNLQQSVNVLFDGKNAAGQRDM-ASGICQLLEKKEGLFRQKLMGKRVNYACRS 393
              +  +W++LQ S+N   D   A    D   +GI QLLE+KEG+FR K+MGKRVNY  RS
Sbjct: 491  NDVTQKWISLQDSINTFMDSSMAQKTADKEQNGIRQLLERKEGMFRMKMMGKRVNYGGRS 550

Query: 394  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLST 453
            VISPDPY+  ++IG+P + A RLT+PE V   N   LR  ++NG + HPGA    D+ + 
Sbjct: 551  VISPDPYITTDQIGVPIFMARRLTFPESVAEVNAEHLRKLVMNGPKQHPGANMIEDEETG 610

Query: 454  MRLPPNKKMRISIGRKLDTSRG--AIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            +R               D  RG   ++  G+        K+VYRHL  GDV+LVNRQPTL
Sbjct: 611  VRTNLE-------SMSFDQRRGLAQLLTVGR--------KIVYRHLNTGDVLLVNRQPTL 655

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HKPSIMAH+ R+L  E+T+RMHYANCSTYNADFDGDEMN+HFPQ  ++ +EAY ++  + 
Sbjct: 656  HKPSIMAHIARILPKEQTIRMHYANCSTYNADFDGDEMNLHFPQSYLACSEAYKLMATHK 715

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
            QY+ P++G P+R LIQD +VS   LT KDTFL ++ + QL+Y                G 
Sbjct: 716  QYIVPTSGKPIRGLIQDSVVSGVFLTSKDTFLTKETYQQLVYV---------------GL 760

Query: 632  RVLISRSE-QEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
            R LI   +  ++  L PA+ KP P WTGKQVI+ ++ +I      +              
Sbjct: 761  RELIEEDKIGKIFTLAPALLKPVPRWTGKQVISTIIKNIVNQEMDY-------------- 806

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
                             K++    ++ D   K      G  G+E              E 
Sbjct: 807  -----------------KINNITGLNLDSKAKLSPKEWGSIGQE--------------EG 835

Query: 751  KLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFT 808
             ++   N+L+ G +DK QF  +++GLVH+  E+YGS  AG LL++L+R+FTVFLQMHGFT
Sbjct: 836  DVVFRDNELLLGTLDKNQFGASEFGLVHSFYEIYGSEKAGELLTSLARIFTVFLQMHGFT 895

Query: 809  CGVDDLLILKDKERERK-----NHLHGSEEIGKRVHLE---ALELEDGAEI--------- 851
            CG++DL+I  +  ++R+      H  G E   K   ++   A E      I         
Sbjct: 896  CGLEDLMITPEFNKQRRLIIENAHKEGIEAAAKFCGIKNYIAKEFNYSNRIVYQSGKNKI 955

Query: 852  --------------DPIK----------LKSEIEKAMRGGGD--AAVAYFDMKMTSQLNK 885
                          +P K          ++  +E+ M    D  A  A  D  M S++++
Sbjct: 956  DQDIERFTNMAVPENPFKNKKIIQEDDPIRKRLEEKMNSADDVQALDAELDNVMRSKMSQ 1015

Query: 886  HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMV 945
             TS  ++   + +GL+K   +N IS M  +GAKG  VN  QIS  LGQQELEGKRVP+M 
Sbjct: 1016 ATSQ-ILKICIPDGLVKRFPRNNISAMVLTGAKGGLVNMTQISCLLGQQELEGKRVPKMQ 1074

Query: 946  SGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQR 1005
            +GKTLP + P+D  PR+ G++ DRF++GLRPQ++YFHCMAGREGL+DTAVKTSRSGYLQR
Sbjct: 1075 NGKTLPCYLPYDPNPRSSGYVTDRFISGLRPQDFYFHCMAGREGLIDTAVKTSRSGYLQR 1134

Query: 1006 CLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ--------------TSFISKFD 1051
            CLIK LE L ++YD +VRD DGSIVQF YGEDG+DV                TS I+ ++
Sbjct: 1135 CLIKQLESLVVNYDMTVRDNDGSIVQFLYGEDGIDVMNSKYLEKFDFLEKNFTSLITTYN 1194

Query: 1052 ALAARERGRGRGRNKFCDKGSHTFVMGR-------NQEMIYKKCSGQLDASNAYIMELPD 1104
                 +R      + +  K        +       N E+  K+  G    S  + ++   
Sbjct: 1195 GSEIMQRVDRNAVDDYKHKAKKVLKKMKKENPSITNHEL--KRYRGDPAISLYHPLKYFG 1252

Query: 1105 ALKDNAEKFADKFLSNEMAKQ--------------------DFLKLVKHKFVLSLAQPGE 1144
            ++ +  +     +L N+  +Q                     F K+   K++ S+  PGE
Sbjct: 1253 SISEKMDSKLKSYLENDSMQQLTAKMGNMAMKQKFEPIKGDTFKKMYFLKYMKSVVHPGE 1312

Query: 1145 PVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTP 1197
             VG +A QSVGEPSTQMTLNTFHLAG G  N+TLGIPRL+EIL     +IKTP
Sbjct: 1313 NVGTIAGQSVGEPSTQMTLNTFHLAGHGAANMTLGIPRLKEILMTTPTNIKTP 1365



 Score = 73.2 bits (178), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 44/75 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG     CPGH G+I+L  P YNP L N LY LLK  C  CH  +   ++++  ++ 
Sbjct: 67  CVTCGLDCQYCPGHLGYIELTAPCYNPFLINQLYKLLKSKCIKCHRIRIHPKKIDIYIQC 126

Query: 61  LELIIKGDIIAAKSL 75
           L+LI  G I+ ++ L
Sbjct: 127 LQLIKSGQIVGSQVL 141


>gi|302666622|ref|XP_003024908.1| hypothetical protein TRV_00913 [Trichophyton verrucosum HKI 0517]
 gi|291188985|gb|EFE44297.1| hypothetical protein TRV_00913 [Trichophyton verrucosum HKI 0517]
          Length = 1642

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/1234 (36%), Positives = 641/1234 (51%), Gaps = 155/1234 (12%)

Query: 41   CFFCHHFKASRREVEKCVRKLELIIKGDIIAAKSL-DLDLPSES---SNPEDSDVSNKSS 96
            C +CH F+ SR +V     KL L+  G I  A  + +++L   +    +  D D  ++  
Sbjct: 65   CIYCHRFRMSRAQVNTYSCKLRLLQYGLIEEAHIVGNMELRKGARGKDDSSDDDSDDEDD 124

Query: 97   CSMVTPRGNYDN--VRNLKPQEWTSLQF--------AEAKLALLQ-FLK--IETTKCGNC 143
             S++  R  Y    + NL   + +            AE + +L++ FL+      KC +C
Sbjct: 125  VSLIQRRNAYVKRCIANLPVHKRSRSHMEIVKDPTAAEMRRSLVRDFLREACAVKKCTSC 184

Query: 144  KAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETH 203
               +P   +  +  I    +P     A +  G  +       EE   L +    D  +T 
Sbjct: 185  SGISPAYRRDKYSKIFRKSLPQKARIAMMEAGFQIPNPLVLMEEASRL-SQKQKDGDKTA 243

Query: 204  SFNGTFPGT-QDTAARRHQKGSGAV----PSGFKKQKDLFSGPLLPS-DVKDIIEKLWEN 257
            +   +     Q  A ++   G+  +         +  D+ S   +PS ++   +  L+  
Sbjct: 244  NLTESLDDDDQPNAEQQISVGNTMLMDVEEDAMTQVGDIESQQYVPSSEIYASLHFLFNK 303

Query: 258  EFELCSFISDMQQQGFGKKAGH---SIFFLGVVLVPPIKFRLPSKGG-DSVMEHPQTVLL 313
            E E+   I D   + F KK  H   ++FF+  +LVPP KFR  ++ G + +ME  Q    
Sbjct: 304  EQEILDLIYD--SRPFVKKRSHISANMFFIKNILVPPNKFRPAAQQGPNEIMEAQQNTSF 361

Query: 314  SKVL----QANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDM------ 363
             +++    Q N  ++             +  + +L Q++  L D  N+   RD       
Sbjct: 362  GRIIKLCDQIN-QISRERQGDTTGTSRRIRDYRDLLQAIVQLQDAVNSLIDRDRNPSQGL 420

Query: 364  ----ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYP 419
                  GI Q LEKK+GLFR+ +MGKRVN+A RSVISPDP +  NEIGIP  FA +LTYP
Sbjct: 421  GAQNEDGIKQRLEKKDGLFRKNMMGKRVNFAARSVISPDPNIETNEIGIPLVFAKKLTYP 480

Query: 420  ERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAI-- 477
            E VT  N  +L+ ++ING +I+PGA    ++L  +         +S+  K    R AI  
Sbjct: 481  EPVTNHNYWELKQAVINGPDIYPGAAAVENELGQV---------VSLKFKTVDERVAIAN 531

Query: 478  --VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYA 535
              + P          K VYRHL  GDVVL+NRQPTLHKPSIM H  RVL GE+T+RMHYA
Sbjct: 532  LLLSPSNWKLKRSRNKRVYRHLTTGDVVLMNRQPTLHKPSIMGHRARVLTGERTIRMHYA 591

Query: 536  NCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAAL 595
            NC+TYNADFDGDEMN+HFPQ+E++RAEA  + + ++QY+  ++G PLR LIQDH+     
Sbjct: 592  NCNTYNADFDGDEMNMHFPQNEIARAEAMQLADTDHQYLVATSGKPLRGLIQDHLSMGVW 651

Query: 596  LTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPL 655
            LT +D+F + D++ QLLYS             +P     +S    ++  + PAI+KP+PL
Sbjct: 652  LTCRDSFFDEDDYHQLLYS-----------CLRPENSHTVS---DKIWLMPPAIFKPQPL 697

Query: 656  WTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKM 715
            WTGKQ+I+ VL +IT         R G           N D +S                
Sbjct: 698  WTGKQIISTVLKNITPD------NRAG----------LNLDSKSSTP------------- 728

Query: 716  HKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--G 773
              D+ G K E      GE                  + +   +L+ G++DK+Q      G
Sbjct: 729  -GDRWGDKAE------GE------------------VTVRDGELISGILDKSQLGPTVGG 763

Query: 774  LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEE 833
            L+H++ E+YG   AG L+  L RL T  L M  FTCG+DDL + ++   +RK  +  ++ 
Sbjct: 764  LIHSIHEVYGHIVAGKLIGILGRLLTKVLHMRAFTCGMDDLRLTEEGNAKRKELIQQADG 823

Query: 834  IGKRVHLEALEL-EDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVI 892
            +GK + L+ + L E+  + +  +L+  +E+ +R   D   A  D    S+  +  SS + 
Sbjct: 824  LGKEISLKYVTLDENKVDDEDTELQRRLEEVLR--DDDKHAGLDAMYKSRAGE-LSSEIT 880

Query: 893  NELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPS 952
               L  GL KP   N +  MT SGAKGS VN   IS +LGQQ LEG+RVP M+SGKTLPS
Sbjct: 881  KACLPSGLEKPFPFNNMQTMTVSGAKGSMVNANLISCNLGQQVLEGRRVPVMISGKTLPS 940

Query: 953  FHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 1012
            F P++    AGG++  RFLTG++P EYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E
Sbjct: 941  FQPFETKIGAGGYVFGRFLTGIKPHEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGME 1000

Query: 1013 CLKISYDYSVRD-ADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKG 1071
             LK  YD SVRD +DGSIVQF YGEDG+D+ +   +  F  LA          N   D  
Sbjct: 1001 GLKAEYDTSVRDTSDGSIVQFLYGEDGLDITKQKHLDSFSFLAQNYMSIVSQVNGVNDSS 1060

Query: 1072 S-HTFVMGRNQEMIYKKC--SGQLDASNAYIMELPDALK--DNAEKFAD---KFLSN--- 1120
              H+       +   KK   +G+++A +  +   P        +EKF+    K+L +   
Sbjct: 1061 KIHSEEASSWSKAALKKIKKTGKIEAKDPALAHFPPGANYGSTSEKFSSALKKYLKSNPD 1120

Query: 1121 -----------EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
                       E+ K+ F  ++  K++ S+  PGE +G++A QSVGEPSTQMTLNTFHLA
Sbjct: 1121 NLLKDKSTGEGEITKKAFTTMMNMKYMKSVIDPGEAIGIVAGQSVGEPSTQMTLNTFHLA 1180

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            G    NVTLGIPRL+EI+  AS  I TP +T  L
Sbjct: 1181 GHAAKNVTLGIPRLREIVMTASSHIMTPTMTLKL 1214


>gi|326475279|gb|EGD99288.1| DNA-directed RNA polymerase I [Trichophyton tonsurans CBS 112818]
          Length = 1680

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/1007 (40%), Positives = 556/1007 (55%), Gaps = 131/1007 (13%)

Query: 245  SDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGH---SIFFLGVVLVPPIKFRLPSKGG 301
            S++   +  L+  E E+   I D   + F KK  H   ++FF+  +LVPP KFR  ++ G
Sbjct: 329  SEIHASLHFLFNKEQEILDLIYD--SRPFVKKRSHISANMFFIKNILVPPNKFRPAAQQG 386

Query: 302  -DSVMEHPQTVLLSKVL----QANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKN 356
             + +ME  Q     +++    Q N  ++             +  + +L Q++  L D  N
Sbjct: 387  PNEIMEAQQNTSFGRIIKLCDQIN-QISRERQGDTSGTSRRIRDYRDLLQAIVQLQDAVN 445

Query: 357  AAGQRDM----------ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEI 406
            +   RD             GI Q LEKK+GLFR+ +MGKRVN+A RSVISPDP +  NEI
Sbjct: 446  SLIDRDRNPSQGLGAQNEDGIKQRLEKKDGLFRKNMMGKRVNFAARSVISPDPNIETNEI 505

Query: 407  GIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISI 466
            GIP  FA +LTYPE VT  N  +L+ ++ING +I+PGA    ++L  +         +S+
Sbjct: 506  GIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVENELGQV---------VSL 556

Query: 467  GRKLDTSRGAI----VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
              K    R AI    + P          K VYRHL  GDVVL+NRQPTLHKPSIM H  R
Sbjct: 557  KFKTVDERVAIANLLLSPSNWKLKRSRNKRVYRHLTTGDVVLMNRQPTLHKPSIMGHRAR 616

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            VL GE+T+RMHYANC+TYNADFDGDEMN+HFPQ+E++RAEA  + + ++QY+  ++G PL
Sbjct: 617  VLTGERTIRMHYANCNTYNADFDGDEMNMHFPQNEIARAEAMQLADTDHQYLVATSGKPL 676

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
            R LIQDH+     LT +D+F + D++ QLLYS             +P     +S    ++
Sbjct: 677  RGLIQDHLSMGVWLTCRDSFFDEDDYHQLLYS-----------CLRPENSHTVS---DKI 722

Query: 643  LPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRK 702
              + PAI+KP+PLWTGKQ+I+ VL +IT         R G           N D +S   
Sbjct: 723  WLMPPAIFKPQPLWTGKQIISTVLKNITPD------NRAG----------LNLDSKSSTP 766

Query: 703  KNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRG 762
                           D+ G K E      GE                  + +   +L+ G
Sbjct: 767  --------------GDRWGDKAE------GE------------------VTVRDGELISG 788

Query: 763  VIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDK 820
            ++DK+Q      GL+H++ E+YG   AG L+  L RL T  L M  FTCG+DDL + ++ 
Sbjct: 789  ILDKSQLGPTVGGLIHSIHEVYGHIVAGKLIGILGRLLTKVLHMRAFTCGMDDLRLTEEG 848

Query: 821  ERERKNHLHGSEEIGKRVHLEALEL-EDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKM 879
              +RK  +  ++ +GK + L+ + L E+  E +  +L+  +E+ +R   D   A  D   
Sbjct: 849  NAKRKELIQQADGLGKEISLKYVTLDENKVEDEDTELQRRLEEVLR--DDDKHAGLDAMY 906

Query: 880  TSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGK 939
             S+  +  SS +    L  GL KP   N +  MT SGAKGS VN   IS +LGQQ LEG+
Sbjct: 907  KSRAGE-LSSEITKACLPSGLEKPFPFNNMQTMTVSGAKGSMVNANLISCNLGQQVLEGR 965

Query: 940  RVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSR 999
            RVP M+SGKTLPSF P++    AGG++  RFLTG++P EYYFH MAGREGL+DTAVKTSR
Sbjct: 966  RVPVMISGKTLPSFQPFETKIGAGGYVFGRFLTGIKPHEYYFHAMAGREGLIDTAVKTSR 1025

Query: 1000 SGYLQRCLIKNLECLKISYDYSVRD-ADGSIVQFCYGEDGVDVHQTSFISKFDALAARER 1058
            SGYLQRCLIK +E LK  YD SVRD +DGSIVQF YGEDG+D+ +   +  F  LA    
Sbjct: 1026 SGYLQRCLIKGMEGLKAEYDTSVRDTSDGSIVQFLYGEDGLDITKQKHLDSFSFLAQNYM 1085

Query: 1059 GRGRGRNKFCDKGS-HTFVMGRNQEMIYKKC--SGQLDASNAYIMELPDALK--DNAEKF 1113
                  N   D    H+       +   KK   +GQ++A +  +   P        +EKF
Sbjct: 1086 SIVSQVNGVNDSSKIHSEEASNWSKAALKKIKKTGQIEAKDPALAHFPPGANYGSTSEKF 1145

Query: 1114 AD---KFLSN--------------EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGE 1156
            +    K+L +              E+ K+ F  ++  K++ S+  PGE +G++A QSVGE
Sbjct: 1146 SSALKKYLKSNPDNLLKDKSTGEGEITKKAFTTMMNMKYMKSVIDPGEAIGIVAGQSVGE 1205

Query: 1157 PSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            PSTQMTLNTFHLAG    NVTLGIPRL+EI+  AS  I TP +T  L
Sbjct: 1206 PSTQMTLNTFHLAGHAAKNVTLGIPRLREIVMTASSHIMTPTMTLKL 1252



 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 40/69 (57%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q  + C GH GHI+L V VYN   F+ LY LL+  C +CH F+ SR +V     K
Sbjct: 63  CSTCRQNSWSCAGHSGHIELPVHVYNVTFFDQLYRLLRSQCIYCHRFRMSRAQVNNYSCK 122

Query: 61  LELIIKGDI 69
           L L+  G I
Sbjct: 123 LRLLQYGLI 131


>gi|212531955|ref|XP_002146134.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Talaromyces
            marneffei ATCC 18224]
 gi|210071498|gb|EEA25587.1| DNA-directed RNA polymerase I subunit (Rpa190), putative [Talaromyces
            marneffei ATCC 18224]
          Length = 1689

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/1275 (34%), Positives = 654/1275 (51%), Gaps = 164/1275 (12%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC    + CPGH GHI+L VPV+N   F+ +Y LL+  C +CH  +  R E+     K
Sbjct: 63   CTTCRASSWSCPGHPGHIELPVPVWNVTFFDQVYRLLRAKCDYCHRLRMPRIEINAFACK 122

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTP---RGNYDN--VRNLKPQ 115
            L L+  G  +  ++  +D+  E +     D   K +    T    R  +    +R  + Q
Sbjct: 123  LRLLQYG--LVDQTAKIDMIGEDAQDAAVDADEKGNVDPQTKMELRNKFVKKCIREAQKQ 180

Query: 116  EWTSLQF--------AEAKLALLQFLKIETTK-----CGNCKAKNPRISKPTFGWIHMNG 162
                  F        AE +  L++    E  K     C NC   +P   K  +  I    
Sbjct: 181  GDGDALFGGAKNPVSAEQRRELIKEFFKEAAKNPQKPCANCHYTSPGYRKDRYAKIFRKA 240

Query: 163  MPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGT-------FPGTQDT 215
            M    + AN + G +        +EEK L   +     E    NGT         G ++ 
Sbjct: 241  MTTKALVANQMAGMSAPNPVIVLQEEKRLLNKTK----EQDKQNGTAIGDVAELHGAEEE 296

Query: 216  AARRHQK-GSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFG 274
              R +     G++  G    +   S P    +V   I  L+E E E+ + +   +    G
Sbjct: 297  VVRANAAIDQGSLAGGQVGGQQFVSAP----EVHAAICLLFEKEREILNLVYSSR---LG 349

Query: 275  KKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQA----NIYLANAYVNQ 330
             K    + F+  +LVPP +FR P++ G  +ME  Q    +++L+     N    +    +
Sbjct: 350  FKINPDMMFVRNILVPPNRFRPPAQQGGQIMEAQQNTPFTQILKTCDLINTISHSRQTAE 409

Query: 331  PDNAKV-----IVARWMNLQQSVNVLFD---GKNAAGQRDMASGICQLLEKKEGLFRQKL 382
             D A++     ++   + LQ+ VN L D   G         A+GI Q+LEKKEGLFR+ +
Sbjct: 410  TDGARMREYRDLLQAIVTLQEQVNSLIDSDRGPGGMAAARAANGIKQILEKKEGLFRKNM 469

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
            MGKRVNYA RSVISPDP L  +E+G+P  FA +LT+PE VT +N  +LR+++ING + +P
Sbjct: 470  MGKRVNYAARSVISPDPSLETHEVGVPMVFAKKLTFPEPVTSFNFHELREAVINGPDKYP 529

Query: 443  GATHYLD---KLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQD 499
            GA+   +   ++  ++   N + R ++  +L     A ++  ++       K VYRHL  
Sbjct: 530  GASAIENESGQVVNLKFK-NLEERTALANQLLAPSHAKMKGNRN-------KKVYRHLTT 581

Query: 500  GDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVS 559
            GD V++NRQPTLHKPS+M H  RVL  E+ LR+ Y N ++YNAD+DGDEMN+HFPQ+ ++
Sbjct: 582  GDYVVMNRQPTLHKPSMMGHRARVLPNERVLRLPYPNTNSYNADYDGDEMNMHFPQNTLA 641

Query: 560  RAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSS 619
            R+E   I +A+ QY+  ++G PLR LIQDHI  +  LT +DTF   +E+ +LLYS  +  
Sbjct: 642  RSELLMITDADRQYISSTDGKPLRGLIQDHITVSTFLTSRDTFFEEEEYHELLYSC-LRP 700

Query: 620  SGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVE 679
                + T +             +  + PA  +P  LWTGKQVI+ VL +I    PP    
Sbjct: 701  ENANTVTDR-------------IQLVEPAFIRPRRLWTGKQVISTVLKNIM---PP---- 740

Query: 680  RGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEK 739
                               + R  N +GK S       D+ GK  E              
Sbjct: 741  -------------------NRRGLNLQGKSSTPG----DRWGKGNE-------------- 763

Query: 740  NKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRL 797
                     E+K++    +L+ G++DK Q      G +  + E+YG+  AG+LLS L RL
Sbjct: 764  ---------EDKVIFKDGELLCGILDKKQIGASGGGFIDAIHEIYGNTIAGSLLSILGRL 814

Query: 798  FTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP-IKL 856
             T +L M  F+CG++DL +  + +++R   L  + E+GK V L+ + L+     D   +L
Sbjct: 815  LTRYLNMRAFSCGIEDLRLTPEGDQKRVEILKKAGELGKNVSLKYVTLDQNPAADQDAEL 874

Query: 857  KSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSG 916
            K  +E  +R   D   +  D    SQ  K T S +    L  GL+K    N + LMTT+G
Sbjct: 875  KRRLEDVLR--DDQKQSGLDSVYNSQTRKLT-SDITAGCLPHGLIKQFPWNQMQLMTTTG 931

Query: 917  AKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRP 976
            AKGS VN   IS +LGQQ LEG+RVP MVSGKTLPS+  ++  P+AGG++  RFLTG++P
Sbjct: 932  AKGSSVNANLISCNLGQQVLEGRRVPVMVSGKTLPSYRAFETHPQAGGYVCGRFLTGIKP 991

Query: 977  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDA--DGSIVQFCY 1034
            QEYYFH MAGREGL+DTAVKT++SGYLQRCLIK +E +K+ YD SVRD    GS++QF Y
Sbjct: 992  QEYYFHTMAGREGLIDTAVKTAKSGYLQRCLIKGMEAVKVEYDSSVRDTANGGSVIQFIY 1051

Query: 1035 GEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQE-----MIYKKCS 1089
            GEDG+DV +   +  F  LA          N   ++  H        E     M   K +
Sbjct: 1052 GEDGLDVAKQVHLQNFSFLAQNYVSTMAQLN--MNQDYHKLEKPEVTEWHKDAMKQVKRT 1109

Query: 1090 GQLDASNAYIM-------------ELPDALKDNAEKFADKFLSNE-------MAKQDFLK 1129
            G+LDA +  +                  ALK   +   DK L ++       ++K+ F  
Sbjct: 1110 GRLDAKDPVLAVYQPGGHFGSVSEAFSQALKKYEDSNPDKLLKDKKAGIAGALSKKAFES 1169

Query: 1130 LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTI 1189
            ++  K++ S+  PG+ VG++A QS+G  +TQMTLNTFHLAG    NVTLG+PRL+EI+  
Sbjct: 1170 VMHMKYLNSVIDPGDAVGIVAGQSIGSQTTQMTLNTFHLAGHSARNVTLGVPRLREIVMT 1229

Query: 1190 ASKDIKTPVITCPLL 1204
            ASK   TP +T  ++
Sbjct: 1230 ASKKPMTPTMTVEVI 1244


>gi|296822244|ref|XP_002850253.1| RNA polymerase I largest subunit [Arthroderma otae CBS 113480]
 gi|238837807|gb|EEQ27469.1| RNA polymerase I largest subunit [Arthroderma otae CBS 113480]
          Length = 1680

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1006 (39%), Positives = 551/1006 (54%), Gaps = 129/1006 (12%)

Query: 245  SDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGH---SIFFLGVVLVPPIKFRLPSKGG 301
            S++   +  L+  E E+   I D   + F KK  H   ++FF+  +LVPP KFR  ++ G
Sbjct: 329  SEIHASLHFLFNKEQEILDLIYD--SRPFVKKRSHISANMFFIKNILVPPNKFRPAAQQG 386

Query: 302  -DSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR---WMNLQQSVNVLFDGKNA 357
             + +ME  Q     ++++    +      +  +      R   + +L QS+  L D  N+
Sbjct: 387  PNEIMEAQQNTSFGRIIKLCDQINQISRERQGDTTGTSRRIRDYRDLLQSIVQLQDAVNS 446

Query: 358  AGQRDM----------ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIG 407
               RD             GI Q LEKK+GLFR+ +MGKRVN+A RSVISPDP +  NEIG
Sbjct: 447  LIDRDRNPSQGLGAQNEDGIKQRLEKKDGLFRKNMMGKRVNFAARSVISPDPNIETNEIG 506

Query: 408  IPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIG 467
            IP  FA +LTYPE VT  N  +L+ ++ING +I+PGA    ++L  +         IS+ 
Sbjct: 507  IPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVENELGQV---------ISLK 557

Query: 468  RKLDTSRGAI----VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRV 523
             K    R AI    + P          K VYRHL  GDVVL+NRQPTLHKPSIM H  RV
Sbjct: 558  YKSVDERVAIANLLLSPSNWKLKRSRNKRVYRHLTTGDVVLMNRQPTLHKPSIMGHRARV 617

Query: 524  LKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLR 583
            L GE+T+RMHYANC+TYNADFDGDEMN+HFPQ+E++RAEA  + + ++QY+  ++G PLR
Sbjct: 618  LTGERTIRMHYANCNTYNADFDGDEMNMHFPQNEIARAEAMQLADTDHQYLVATSGKPLR 677

Query: 584  SLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVL 643
             LIQDH+     LT +D+F + D++ QLLYS             +P     +S    ++ 
Sbjct: 678  GLIQDHLSMGVWLTCRDSFFDEDDYHQLLYS-----------CLRPENSHTVS---DKIW 723

Query: 644  PLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKK 703
             + PAI+KP PLWTGKQ+I+ VL +IT              P +  +   N D +S    
Sbjct: 724  LIPPAIFKPRPLWTGKQIISTVLKNIT--------------PDN--RAGLNLDSKSSTPG 767

Query: 704  NDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGV 763
            N  G                                      + +E  + +   +L+ G+
Sbjct: 768  NRWG--------------------------------------DNAEGDVTVRDGELISGI 789

Query: 764  IDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKE 821
            +DK Q      GL+H++ E+YG   AG L+  L RL T  L M  FTCG+DDL + ++  
Sbjct: 790  LDKNQLGPTVGGLIHSIHEVYGHIVAGKLIGILGRLLTKVLHMRAFTCGMDDLRLTEEGN 849

Query: 822  RERKNHLHGSEEIGKRVHLEALEL-EDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMT 880
             +RK  +  ++ +G  + L+ + L E+  E +  +LK  +E+ +R   D   A  D    
Sbjct: 850  AKRKKLIQQADNLGNEIALKYVTLDENKVEDEDAELKRRLEEVLRD--DDKHAGLDGMYK 907

Query: 881  SQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKR 940
            S+  +  SS +    L  GL KP   N +  MT SGAKGS VN   IS +LGQQ LEG+R
Sbjct: 908  SRTGE-LSSEITKACLPSGLEKPFPFNNMQTMTVSGAKGSMVNANLISCNLGQQVLEGRR 966

Query: 941  VPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRS 1000
            VP M+SGKTLPSF P++    AGG++  RFLTG++P EYYFH MAGREGL+DTAVKTSRS
Sbjct: 967  VPVMISGKTLPSFQPYETKIGAGGYVFGRFLTGIKPHEYYFHAMAGREGLIDTAVKTSRS 1026

Query: 1001 GYLQRCLIKNLECLKISYDYSVRD-ADGSIVQFCYGEDGVDVHQTSFISKFDALAARERG 1059
            GYLQRCLIK +E LK  YD SVRD +DGS+VQF YGEDG+D+ +   +  F  LA     
Sbjct: 1027 GYLQRCLIKGMEGLKAEYDTSVRDTSDGSVVQFLYGEDGLDITKQKHLDSFTFLAQNYMS 1086

Query: 1060 RGRGRNKFCDKGS-HTFVMGRNQEMIYKKC--SGQLDASNAYIMELPDALK--DNAEKFA 1114
                 N   D    H+       +   KK   +G++DA +  +   P        +EKFA
Sbjct: 1087 IVSQVNGVKDSSKIHSEEASNWNKAAMKKIKKTGKIDAKDPALALFPPGANYGSTSEKFA 1146

Query: 1115 -----------DKFL------SNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEP 1157
                       D  L        E++K+ F  ++  K++ S+  PGE +G++A QSVGEP
Sbjct: 1147 SALKKYMKTNPDNLLKEKSKAEGEISKKAFTTMMNIKYMKSVIDPGEAIGIVAGQSVGEP 1206

Query: 1158 STQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            STQMTLNTFHLAG    NVTLGIPRL+EI+  AS  I TP +T  L
Sbjct: 1207 STQMTLNTFHLAGHAAKNVTLGIPRLREIVMTASNHIMTPTMTLKL 1252



 Score = 70.5 bits (171), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 43/75 (57%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q  + C GH GHI+L V VYN   F+ LY LL+  C +CH F+ +R ++     K
Sbjct: 63  CSTCRQNSWSCAGHAGHIELPVHVYNVTFFDQLYRLLRSQCIYCHRFRMARAQINNYACK 122

Query: 61  LELIIKGDIIAAKSL 75
           L L+  G I  A ++
Sbjct: 123 LRLLQYGLIEEAHTV 137


>gi|222635876|gb|EEE66008.1| hypothetical protein OsJ_21959 [Oryza sativa Japonica Group]
          Length = 994

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/639 (51%), Positives = 430/639 (67%), Gaps = 57/639 (8%)

Query: 208 TFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGP--LLPSDVKDIIEKLWENEFELCSFI 265
           T PGT    +RR    +  +     K+    SG   LL ++V+ I++ LW+ E   C  +
Sbjct: 44  TSPGT---LSRRSTNETRRISDDTIKEMVASSGKKHLLTTEVESILKDLWKKEARFCMLL 100

Query: 266 SDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIY 322
            D QQ       K+ G+ +FFL  +LV P +FR        +MEHPQ VLLSKV ++N+ 
Sbjct: 101 CDFQQNTLSVSEKRRGYEMFFLKNLLVAPNRFRPSISSSLGIMEHPQNVLLSKVQESNLA 160

Query: 323 LANAYVNQPDNAKVIVARWMNLQQSVNVLFDG-KNAAGQRDMASGICQLLEKKEGLFRQK 381
           L  +      N   ++ RWM+LQ++VNVL+D  K  +     A+GI QLLEKKEG+ RQK
Sbjct: 161 LQQSIA--ASNHMEVLRRWMDLQRNVNVLYDSSKGLSKNEKNANGIRQLLEKKEGILRQK 218

Query: 382 LMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIH 441
           +MGKRVNYACRSVISPDPYLAVNEIGIPP FA RLTYPE+VTPWN  KL+++I NGA+IH
Sbjct: 219 MMGKRVNYACRSVISPDPYLAVNEIGIPPVFATRLTYPEKVTPWNARKLQEAINNGADIH 278

Query: 442 PGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGD 501
           PGATHY D  +  +L      R +I + L  SRG+I QPGKD   EFE K+VYRHLQDGD
Sbjct: 279 PGATHYRDNNNMYKLQAAPPKRRAIAKMLPASRGSISQPGKDPKCEFESKVVYRHLQDGD 338

Query: 502 VVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRA 561
           VVLVNRQPTLHKPS+MAHVVRVL GEKT+RMHYANCSTYNADFDGDEMNVHFPQDE+SRA
Sbjct: 339 VVLVNRQPTLHKPSMMAHVVRVLPGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRA 398

Query: 562 EAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSG 621
           EA NIV+AN QY+ P +GD +R LIQDHI+ A LLTK DTFL+R+E+ QL+Y S +SS+ 
Sbjct: 399 EAINIVDANKQYIGPRSGDAVRGLIQDHIIGAVLLTKLDTFLSREEYNQLVYGSVLSST- 457

Query: 622 LGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERG 681
               +G+ G+++ I   +  + P+ PAIWKP+PLWTGKQVIT +LNH+T+GRPPF VE+ 
Sbjct: 458 --RRSGQFGKKISIIMDDDALEPVPPAIWKPKPLWTGKQVITTILNHVTKGRPPFTVEKK 515

Query: 682 GKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNK 741
           G++ +++                          + ++++G K + +              
Sbjct: 516 GRIEKEYL-------------------------IPEERNGDKVKTINP------------ 538

Query: 742 SKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVF 801
                 SE+ L ++ N+L++G+IDKAQF +YG+VHTV ELYG  TAG LLS+ SRLFT+ 
Sbjct: 539 ------SEQVLYVHDNELIKGMIDKAQFGNYGIVHTVHELYGPETAGVLLSSFSRLFTMV 592

Query: 802 LQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHL 840
           LQ+HGFTCGVDDLL+ ++ +  R+  L  SE+  K VH+
Sbjct: 593 LQLHGFTCGVDDLLLSQESDMTREEILGKSEKHSKIVHI 631



 Score =  306 bits (784), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 178/351 (50%), Positives = 217/351 (61%), Gaps = 37/351 (10%)

Query: 818  KDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDM 877
            +D E E   H     E     H +     +G + D +KL+ E+EK +R  G++A    D 
Sbjct: 675  EDHEAEDSTHPKEDHEAEDSTHPKEDHEAEGDDEDQMKLQMEVEKIIRRNGESATVILDR 734

Query: 878  KMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELE 937
             M+S+LN  TS  V  ++   GL KP   N +SLMT +GAKG  VN  QISS LGQQELE
Sbjct: 735  NMSSELNTLTSK-VNKKVFPYGLRKPFPGNCLSLMTQTGAKGGLVNMTQISSLLGQQELE 793

Query: 938  GKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKT 997
            GKRVPRM+SGKTLP F PWD + RAGGFI DRFLTGLRPQEYYFHCMAGREGLVDTAVKT
Sbjct: 794  GKRVPRMISGKTLPCFPPWDTSSRAGGFIGDRFLTGLRPQEYYFHCMAGREGLVDTAVKT 853

Query: 998  SRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFI-SKFDALAAR 1056
            SRSGYLQRCLIK+LE LK+SYD++          FCYGEDGVDV +TSF+  KF  L+  
Sbjct: 854  SRSGYLQRCLIKSLESLKVSYDHT----------FCYGEDGVDVLKTSFLDDKFRELSDN 903

Query: 1057 ERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADK 1116
             R      +   DK  H  +                   N YI ELP+ L +NA +F  K
Sbjct: 904  RRALLGKLDSHNDK--HLLL-----------------NPNGYISELPEKLIENAMEFL-K 943

Query: 1117 FLSNEMAKQD-----FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMT 1162
               NE  + D      +KL+K K++ SL  PGE VG++A+QS+GEPSTQMT
Sbjct: 944  SKRNEKGRYDIKEKELMKLLKVKYISSLVDPGEAVGVVAAQSIGEPSTQMT 994


>gi|326480372|gb|EGE04382.1| DNA-directed RNA polymerase I subunit [Trichophyton equinum CBS
            127.97]
          Length = 1680

 Score =  639 bits (1648), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 398/1007 (39%), Positives = 556/1007 (55%), Gaps = 131/1007 (13%)

Query: 245  SDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGH---SIFFLGVVLVPPIKFRLPSKGG 301
            S++   +  L+  E E+   I D   + F KK  H   ++FF+  +LVPP KFR  ++ G
Sbjct: 329  SEIHASLHFLFNKEQEILDLIYD--SRPFVKKRSHISANMFFIKNILVPPNKFRPAAQQG 386

Query: 302  -DSVMEHPQTVLLSKVL----QANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKN 356
             + +ME  Q     +++    Q N  ++             +  + +L Q++  L D  N
Sbjct: 387  PNEIMEAQQNTSFGRIIKLCDQIN-QISRERQGDTSGTSRRIRDYRDLLQAIVQLQDAVN 445

Query: 357  AAGQRDM----------ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEI 406
            +   RD             GI Q LEKK+GLFR+ +MGKRVN+A RSVISPDP +  NEI
Sbjct: 446  SLIDRDRNPSQGLGAQNEDGIKQRLEKKDGLFRKNMMGKRVNFAARSVISPDPNIETNEI 505

Query: 407  GIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISI 466
            GIP  FA +LTYPE VT  N  +L+ ++ING +I+PGA    ++L  +         +S+
Sbjct: 506  GIPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVENELGQV---------VSL 556

Query: 467  GRKLDTSRGAI----VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
              K    R AI    + P          K VYRHL  GDVVL+NRQPTLHKPSIM H  R
Sbjct: 557  KFKTVDERVAIANLLLSPSNWKLKRSRNKRVYRHLTTGDVVLMNRQPTLHKPSIMGHRAR 616

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            VL GE+T+RMHYANC+TYNADFDGDEMN+HFPQ+E++RAEA  + + ++QY+  ++G PL
Sbjct: 617  VLTGERTIRMHYANCNTYNADFDGDEMNMHFPQNEIARAEAMQLADTDHQYLVATSGKPL 676

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
            R LIQDH+     LT +D+F + D++ QLLYS             +P     +S    ++
Sbjct: 677  RGLIQDHLSMGVWLTCRDSFFDEDDYHQLLYS-----------CLRPENSHTVS---DKI 722

Query: 643  LPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRK 702
              + PAI+KP+PLWTGKQ    +++ + +   P    R G           N D +S   
Sbjct: 723  WLMPPAIFKPQPLWTGKQ----IISTVLKNITPD--NRAG----------LNLDSKS--- 763

Query: 703  KNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRG 762
                                        PG+         +  + +E ++ +   +L+ G
Sbjct: 764  --------------------------STPGD---------RWGDKAEGEVTVRDGELISG 788

Query: 763  VIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDK 820
            ++DK+Q      GL+H++ E+YG   AG L+  L RL T  L M  FTCG+DDL + ++ 
Sbjct: 789  ILDKSQLGPTVGGLIHSIHEVYGHIVAGKLIGILGRLLTKVLHMRAFTCGMDDLRLTEEG 848

Query: 821  ERERKNHLHGSEEIGKRVHLEALEL-EDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKM 879
              +RK  +  ++ +GK + L+ + L E+  E +  +L+  +E+ +R   D   A  D   
Sbjct: 849  NAKRKELIQQADGLGKEISLKYVTLDENKVEDEDTELQRRLEEVLRD--DDKHAGLDAMY 906

Query: 880  TSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGK 939
             S+  +  SS +    L  GL KP   N +  MT SGAKGS VN   IS +LGQQ LEG+
Sbjct: 907  KSRAGE-LSSEITKACLPSGLEKPFPFNNMQTMTVSGAKGSMVNANLISCNLGQQVLEGR 965

Query: 940  RVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSR 999
            RVP M+SGKTLPSF P++    AGG++  RFLTG++P EYYFH MAGREGL+DTAVKTSR
Sbjct: 966  RVPVMISGKTLPSFQPFETKIGAGGYVFGRFLTGIKPHEYYFHAMAGREGLIDTAVKTSR 1025

Query: 1000 SGYLQRCLIKNLECLKISYDYSVRD-ADGSIVQFCYGEDGVDVHQTSFISKFDALAARER 1058
            SGYLQRCLIK +E LK+ YD SVRD +DGSIVQF YGEDG+D+ +   +  F  LA    
Sbjct: 1026 SGYLQRCLIKGMEGLKVEYDTSVRDTSDGSIVQFLYGEDGLDITKQKHLDSFSFLAQNYM 1085

Query: 1059 GRGRGRNKFCDKGS-HTFVMGRNQEMIYKKC--SGQLDASNAYIMELPDALK--DNAEKF 1113
                  N   D    H+       +   KK   +GQ++A +  +   P        +EKF
Sbjct: 1086 SIVSQVNGVNDSSKIHSEEASNWSKAALKKIKKTGQIEAKDPALAHFPPGANYGSTSEKF 1145

Query: 1114 AD---KFLSN--------------EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGE 1156
            +    K+L +              E+ K+ F  ++  K++ S+  PGE +G++A QSVGE
Sbjct: 1146 SSALKKYLKSNPDNLLKDKSTGEGEITKKAFTTMMNMKYMKSVIDPGEAIGIVAGQSVGE 1205

Query: 1157 PSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            PSTQMTLNTFHLAG    NVTLGIPRL+EI+  AS  I TP +T  L
Sbjct: 1206 PSTQMTLNTFHLAGHAAKNVTLGIPRLREIVMTASSHIMTPTMTLKL 1252



 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 40/69 (57%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q  + C GH GHI+L V VYN   F+ LY LL+  C +CH F+ SR +V     K
Sbjct: 63  CSTCRQNSWSCAGHSGHIELPVHVYNVTFFDQLYRLLRSQCIYCHRFRMSRAQVNNYSCK 122

Query: 61  LELIIKGDI 69
           L L+  G I
Sbjct: 123 LRLLQYGLI 131


>gi|449017030|dbj|BAM80432.1| RNA polymerase I largest subunit [Cyanidioschyzon merolae strain 10D]
          Length = 1607

 Score =  639 bits (1648), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 460/1266 (36%), Positives = 653/1266 (51%), Gaps = 202/1266 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASR-RE--VEKC 57
            C TC    F CPGH GHI+L  PV NPLLF+LL  LL+ +C  C +F+  R RE    +C
Sbjct: 69   CATCRLGFFSCPGHCGHIELAEPVVNPLLFSLLVRLLRGVCLGCANFRLPRIREKLWLEC 128

Query: 58   VRKLELIIKGDIIAAKSLD--LDLPSESSNP-------EDSDVSNKSSCS---------M 99
            +R LE   +G     +SL   L L  +S++P       + SDVS++SS           +
Sbjct: 129  LRHLE---RGTWQNFESLADLLQLDKQSTSPDLAGFLDQTSDVSSESSDGSRSSTKKPRL 185

Query: 100  VTPRGNYDNVR----NLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTF 155
             + RG +  V     +   ++ T++Q +  ++ L+Q         G+C + N   ++   
Sbjct: 186  ESARGGHSGVHTDRFDAATEKLTTVQRSSRRVQLMQRF------IGDCTSSNAACTRCGC 239

Query: 156  GWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDT 215
              +H        IR +   GC +        +     A++   A            + DT
Sbjct: 240  KAVH--------IRTD---GCRIFARLPPTRKRSKAAATTLATAQA----------SPDT 278

Query: 216  AARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGK 275
             A+   +   A+     K++ L     LPS V  I+  + +N  ELC ++       FG 
Sbjct: 279  EAQCQTQLLEALCLVAGKEQLL-----LPSMVVRILLAVEQNSPELCGYL-------FGH 326

Query: 276  KAGHSIFFLGVVLVPPIKFRLPSKGGDSV----MEHPQTVLLSKVLQANIYLANAYVNQP 331
                + F L V+LVPP +FRLPS   D V     EH Q    + VL+AN  +A+A   + 
Sbjct: 327  HLLDT-FLLRVLLVPPSRFRLPSTRDDDVNSIPREHAQNFHYTYVLKANESVADA--RKA 383

Query: 332  DNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYAC 391
             N   +      LQQ+V  L D +  A  R  A GI Q LE KEG+FR  LMGKRVNYA 
Sbjct: 384  RNPLALGKAVAELQQAVQELVDSEPTASMR-RAPGIRQQLEHKEGIFRMHLMGKRVNYAA 442

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            RSVISPDP+L VNE+G+P  FA++L++PE V  WN+ +L+ ++  G + +PGA       
Sbjct: 443  RSVISPDPFLDVNEVGVPLQFAMKLSFPELVASWNLTRLQQNVYRGPQRYPGA------- 495

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGK----------MVYRHLQDGD 501
            + +      +++I  G   D+ R  ++     ++  FE +           V+RHLQ+GD
Sbjct: 496  NIIERGDGTRIQIPAG---DSKRSGVL-----AETLFEAEELPDGCVVPTRVFRHLQNGD 547

Query: 502  VVLVNRQPTLHKPSIMAHVVRVL-KGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSR 560
             VL NRQPTLH+  +MAH VRVL   E TLR+HYANC  YNADFDGDEMN+H PQD ++ 
Sbjct: 548  RVLFNRQPTLHRVGLMAHRVRVLGPTENTLRLHYANCGAYNADFDGDEMNMHVPQDWIAA 607

Query: 561  AEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS-- 618
            AEA  ++  +  Y+ P+ G P+R LIQDH+++A LLT++D F + +E+ +L+Y++     
Sbjct: 608  AEAEYLLRIDFHYLSPTAGAPVRGLIQDHVLAAVLLTQRDRFFSWEEYSELIYAATARLW 667

Query: 619  -----------SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLN 667
                        S LG FT                  + PAI  P+  WTGKQV++ VL 
Sbjct: 668  ERKRGTEGTAPGSALGPFT--------------VCADVPPAILYPQQYWTGKQVLSTVLG 713

Query: 668  HITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVV 727
             +                         AD ++  +K      +K +     +S  ++ +V
Sbjct: 714  IVAH----------------------LADPENRHRKLRMQSRAKVSSAFWGQSASEESIV 751

Query: 728  EGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSN 785
                                     +I   +L++GV+DKAQ   A +GLVH V  LYG  
Sbjct: 752  -------------------------IIRDGELLQGVVDKAQIGAAPFGLVHCVHALYGPE 786

Query: 786  TAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSE-EIGKRVHLEALE 844
             A  LLS L RL T+FL+ HG + GV+DLL+L   ER R   L  ++  +G RV    L 
Sbjct: 787  AACDLLSCLGRLLTIFLRRHGHSTGVEDLLLLPSTERIRWEMLKDTQITVGSRVLRRVLG 846

Query: 845  LEDGAEIDPIKLKSEIEKAMRGG-GDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKP 903
            L     +D   L+  + +A+R   G       DM+M  +L    +S+V    +  GL KP
Sbjct: 847  LPADGTVD---LEHALAEALRTERGRELELLLDMEMKKELAS-IASNVSEHCIPAGLRKP 902

Query: 904  TGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAG 963
               N  +LMT SGAKGS+VN  QIS  LG   L+G+RVPR V+G TLP F P++    AG
Sbjct: 903  FPNNGFALMTASGAKGSQVNAAQISCLLGSTVLDGRRVPRSVAGWTLPCFRPYESTALAG 962

Query: 964  GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
            GFI  RFLTGL P EY+FHCMAGREGL DTAVKT+RSGYLQRCL+K LE + I+YD +VR
Sbjct: 963  GFIASRFLTGLSPPEYFFHCMAGREGLTDTAVKTARSGYLQRCLVKALEGVTIAYDGTVR 1022

Query: 1024 DADGSIVQFCYGEDGVDVHQTSFI---SKFDALAARERGRGRGRNKFCDKGSHTFVMGRN 1080
            ++DGSI+QFCYGEDG+D  Q  ++   ++F A+   +  R  G  KF  +         N
Sbjct: 1023 ESDGSIIQFCYGEDGLDPCQALWLQHRAEFMAILLADGTRSAG--KFASQSPSNATRKSN 1080

Query: 1081 QEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLA 1140
                 + C+      +A   +LP AL +  E        +E  +   L+     +  S A
Sbjct: 1081 AVSAAEVCATH----SASSPKLPPALLEMYETL------DEAHRSALLEW----YTRSTA 1126

Query: 1141 QPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
             PG+ VG++A+QS+GEPSTQMTLNTFH AG G  +VT G+PRL+E+L        TP + 
Sbjct: 1127 APGDAVGVIAAQSIGEPSTQMTLNTFHFAGIGVEHVTAGVPRLRELLMFPGSAPATPFMQ 1186

Query: 1201 CPLLVG 1206
             P   G
Sbjct: 1187 IPFKEG 1192


>gi|292620699|ref|XP_001922839.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Danio rerio]
          Length = 1693

 Score =  637 bits (1643), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 413/1093 (37%), Positives = 576/1093 (52%), Gaps = 202/1093 (18%)

Query: 242  LLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKG 300
            L PS  ++ I KLWE E F L    S              +FFL +++VPP ++R  ++ 
Sbjct: 248  LTPSVAREHIIKLWETEGFFLKHLFSGFDMDNSDNGFNPEVFFLELLVVPPCRYRPINRL 307

Query: 301  GDSVMEHPQTVLLSKVLQANIYLANAY--------------------------VNQPDNA 334
            GD +  + QTV +  VL+  + +                              V + D +
Sbjct: 308  GDQMFTNGQTVNMQAVLKDGLIIQKLLTLIADEKTKAIEGTQTELEQSSEAPKVTEIDQS 367

Query: 335  KV-----------IVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLM 383
             +           + + W++LQ  VN++FD        +   G+ QLLEKKEGLFR+ +M
Sbjct: 368  FLTSIQGVTLTDKLYSTWIHLQSLVNIVFDSDMDKLITEKFPGVRQLLEKKEGLFRKHMM 427

Query: 384  GKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPG 443
            GKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV ++R +++NG  IHPG
Sbjct: 428  GKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEMRQAVLNGPNIHPG 487

Query: 444  ATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGD 501
            AT  +  D   T+    N+  R ++ ++L T             +    K+V RH+++GD
Sbjct: 488  ATMVVNEDGSRTILSSTNQTQREAVAKQLLTPSTG--------QHRIPMKIVNRHIKNGD 539

Query: 502  VVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRA 561
            V+L+NRQPTLH+PSI AH  R+L GEK LR+HYANC  YNADFDGDEMN HFPQ E+SRA
Sbjct: 540  VLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELSRA 599

Query: 562  EAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSG 621
            EAY +V+ + QY+ P +G PL  LIQDH+VS   +T +  F  RD++  L+Y        
Sbjct: 600  EAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFTRDQYTALVYRG------ 653

Query: 622  LGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI-TAVLNHITRGRPPFVVER 680
                T K G RV       ++LP  P + KP  LWTGKQV+ T +LN I     P  +  
Sbjct: 654  ---LTDKIG-RV-------KLLP--PTLIKPVLLWTGKQVVSTLLLNVIPENSIPLNLTG 700

Query: 681  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
              K+P                     GK               KE     PG   E+   
Sbjct: 701  KAKIP---------------------GK------------AWVKESPRPVPGYVPES--- 724

Query: 741  KSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLF 798
                  + E +++I + +L+ GV+DKA +    YGLVH   ELYG  T+G LLS L+RLF
Sbjct: 725  ------MCESQVVIRQGELLMGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLF 778

Query: 799  TVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLK 857
            T +LQ++ GFT GV+D+L+     ++RK  +  S   G +    A  L   AE    + +
Sbjct: 779  TAYLQLYRGFTLGVEDILVKDGANKQRKKIIKKSVTCGSKALQAAFNLPASAE--DTEAR 836

Query: 858  SEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGA 917
               + A            D+K   ++N+  ++++    +  GL +   +N + +M  SGA
Sbjct: 837  ERWQDAHLNIDQRDFNMVDLKFKEEVNQ-VNNNINKVCMPLGLHRSFPENNLQMMVQSGA 895

Query: 918  KGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQ 977
            KGS VN  QIS  LGQ ELEG+R P M SGK+LP F P++  PR+GGF+  RFLTG++P 
Sbjct: 896  KGSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGIKPP 955

Query: 978  EYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIV------- 1030
            E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+V       
Sbjct: 956  EFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGED 1015

Query: 1031 -------------QFCYGEDGVDVHQTS-----FISKFDALAARERGRGRGRNK------ 1066
                         QF + +D  +V + S      ++K D +AA    +   + K      
Sbjct: 1016 GLDIPKTQFLQPRQFPFIKDNYEVIRKSKCLDEVLAKMDPVAALNHFKAIKKWKAKHEHA 1075

Query: 1067 ---------FCDKG---------SHTFVMGRNQ----------------EMIYKK----- 1087
                     F  K           H  V GR +                 M Y K     
Sbjct: 1076 SPRDGAFLLFSQKKMSKLKAQVEGHELVNGREEATLQLIERWRALDESGRMRYSKKTSHC 1135

Query: 1088 ---CSG--QLDASNAYIMELPDALKDNAEKFADKF-------LSNEMAKQDFLK-LVKHK 1134
               C G  + D S   + E  D++    E + ++F        S+E    D L+ L++ K
Sbjct: 1136 PEPCLGLYRPDISFGSVSETFDSI---VESYLNQFNIKQEFSASSETTDADRLRNLLQLK 1192

Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
            +  +L  PGE VGL+A+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +I
Sbjct: 1193 WQRALCDPGEAVGLVAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLVASSNI 1252

Query: 1195 KTPVITCPLLVGK 1207
            KTP+++ P+++ K
Sbjct: 1253 KTPMMSIPVVMNK 1265



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 34/54 (62%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREV 54
           C TC Q    CPGHFGHI+L +PVYNPL F+ LY L++  C  CH  K  R  +
Sbjct: 64  CSTCMQDFSSCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSCHILKCPRAAI 117


>gi|240977019|ref|XP_002402573.1| DNA-directed RNA polymerase I largest subunit, putative [Ixodes
            scapularis]
 gi|215491199|gb|EEC00840.1| DNA-directed RNA polymerase I largest subunit, putative [Ixodes
            scapularis]
          Length = 1640

 Score =  635 bits (1639), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 418/1106 (37%), Positives = 572/1106 (51%), Gaps = 189/1106 (17%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG     CPGH GHI L +  +NPL F  LY LL+  CF C    +     +  + +
Sbjct: 63   CATCGLGFVACPGHIGHISLPLLTFNPLFFRTLYQLLRGSCFGCARLLSPPAVCQLTLAQ 122

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
            L+++  G + A + L  +L +E+   E    S +S   +   +   + V+++        
Sbjct: 123  LQVLQYGAVGAVQELQ-ELAAEAITDEKGKAS-RSVMGLALKKRIDERVKSIMEGRANVK 180

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPH-----ADIRANLIRG 175
               E +  L++                      TF   H+ G P       D+R  +   
Sbjct: 181  NVVECRQRLIK----------------------TFVREHLMGAPRKCPHCGDVRRGMTIQ 218

Query: 176  CNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQK 235
             N    ++G  +  D+    +    +  S         DT A+ +               
Sbjct: 219  NNARFVYTGRAQGMDIPEEEEEVPVKEESV--------DTGAQTY--------------- 255

Query: 236  DLFSGPLLPSDVKDIIEKLWENEFELCSFI-----SDMQQQGFGKKAGHSIFFLGVVLVP 290
                  L P + +  +  LW+NE  L   +     SD Q+          +FFL  ++VP
Sbjct: 256  ------LTPLEARKHLRLLWQNESPLLRHLFGALGSDSQKHPV------DMFFLEALVVP 303

Query: 291  PIKFRLPSKGGDSVMEHPQTVLLSKVLQ----ANIYLANAYVNQPD-------------- 332
            P +FR  +       EHPQTV LSKVLQ    A   L     NQ                
Sbjct: 304  PTRFRPMNFMHGRKYEHPQTVSLSKVLQCCDAARAVLKLMERNQDSESSEDTMEMQRLQV 363

Query: 333  ---------------NAKVIVARWMNLQQSVNVLFDGK-NAAGQRDMASGICQLLEKKEG 376
                           ++K+ VA W NLQ +VNV+ D + +         GI Q+LEKKEG
Sbjct: 364  CTFRQVVDKLPGKDLSSKLHVA-WNNLQVAVNVVVDSELDRLSSNKATPGIKQILEKKEG 422

Query: 377  LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
            LFR+ +MGKRVNYA RSVISPDPY+ V+EIG+P  FA RL+YPE VT  NV +LR ++IN
Sbjct: 423  LFRKHMMGKRVNYAARSVISPDPYIGVDEIGVPMVFATRLSYPEPVTDRNVSELRKAVIN 482

Query: 437  GAEIHPGA--THYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEF-EGKMV 493
            G  ++PGA    + D   T   P N+  R +I ++L T       P     N     K V
Sbjct: 483  GPNVYPGALLVEHGDGTVTRLDPTNRVRREAIAKQLMT-------PSDSFKNTLARCKTV 535

Query: 494  YRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHF 553
            +RHL+ GD++L+NRQPTLHKPSIMAH  RVL GEKTLR+HYANC  YNADFDGDEMN HF
Sbjct: 536  HRHLRTGDMLLLNRQPTLHKPSIMAHQARVLPGEKTLRLHYANCKCYNADFDGDEMNAHF 595

Query: 554  PQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLY 613
            PQ E++RAEA  +   N QY+ P +G PL  LIQDH+++ +LLT +  F NR+++ QL+Y
Sbjct: 596  PQSELARAEASQVATVNRQYLVPKDGTPLSGLIQDHVIAGSLLTMQGRFFNREDYNQLVY 655

Query: 614  SSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL-NHITRG 672
                     G+ T  P        S  +VLP  PAI KPE LWTGKQV++ VL N I R 
Sbjct: 656  ---------GALTFVP--------SSIKVLP--PAIQKPETLWTGKQVLSTVLINCIPRN 696

Query: 673  RPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPG 732
            +P   VE   K+P   +                                        +PG
Sbjct: 697  KPAPTVEGKAKIPAKAWL---------------------------------------RPG 717

Query: 733  EEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTL 790
             E         E ++SE +++I   +L+ GV+DKA +    +GLVH   ELYG   +  +
Sbjct: 718  SEA-----NEAEAQMSEGQVVIRDGELLCGVLDKAHYGPTQFGLVHVCYELYGGAISSLV 772

Query: 791  LSALSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGA 849
            L+A +RLFT FLQ H GFT G++D+L+    +++RK  +  + + G     +AL +E+  
Sbjct: 773  LTAFARLFTHFLQTHVGFTLGIEDILVTLKADKKRKKIMKMARKEGDGAAKKALGIEE-- 830

Query: 850  EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWI 909
            +I P  L   +  A     D  +   D  M S +    ++ +    + +GLLK   +N +
Sbjct: 831  DIAPEDLMESLRGAHLSRNDRYLKQLDASMKS-VTDDVNNQINKACIPDGLLKKFPENNL 889

Query: 910  SLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDR 969
             LM  SGAKG  VN  QIS  LGQ ELEG+RVP M+SG+TLPSF P+D +PRAGGF+  R
Sbjct: 890  QLMVQSGAKGGMVNCMQISCLLGQIELEGRRVPLMLSGRTLPSFLPYDTSPRAGGFVDGR 949

Query: 970  FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSI 1029
            FLTG+RPQE++FHCMAGREGLVDTAVKTSRSGYLQRCLIK+LE L + YD +VRD+DGS 
Sbjct: 950  FLTGIRPQEFFFHCMAGREGLVDTAVKTSRSGYLQRCLIKHLEGLMVGYDQTVRDSDGS- 1008

Query: 1030 VQFCYGEDGVDVHQTSFI--SKFDAL 1053
              F YGEDG+DV +   +  S+F  L
Sbjct: 1009 --FQYGEDGLDVLKMQMLKPSQFPVL 1032



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 65/83 (78%)

Query: 1122 MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIP 1181
            ++  DF  +V  + + S+  PGEPVGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIP
Sbjct: 1194 LSPDDFRNVVYLRNLRSICDPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIP 1253

Query: 1182 RLQEILTIASKDIKTPVITCPLL 1204
            R++EIL +AS +I TP +   LL
Sbjct: 1254 RMREILMVASANIATPTMDLHLL 1276


>gi|91084933|ref|XP_970918.1| PREDICTED: similar to DNA-directed RNA polymerase I largest subunit
            [Tribolium castaneum]
 gi|270008555|gb|EFA05003.1| hypothetical protein TcasGA2_TC015082 [Tribolium castaneum]
          Length = 1619

 Score =  632 bits (1630), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 410/1077 (38%), Positives = 570/1077 (52%), Gaps = 167/1077 (15%)

Query: 218  RRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKA 277
            R   KGS  V     K K   +  + P + +  +  +W+ E EL   I  +   G   + 
Sbjct: 237  RNVAKGSTEV---LGKVKAFEAKYVTPDESRTYMRNIWKEEKELMREIIAVLG-GVEGEH 292

Query: 278  GHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL-------------- 323
               +F+  V+ V P   R  +     V EHP + L   ++   I L              
Sbjct: 293  PTDVFYWDVIPVIPPNMRPVNIVNSRVSEHPTSQLYKNIIHNTILLRLIIQVVKNKGDLG 352

Query: 324  ------ANAYVNQPDNAKV--IVARWMNLQQSVNVLFDG---KNAAGQRDMASGICQLLE 372
                    AY     ++ +  +   W +LQ  V+ L D    +NA       +G+ Q++E
Sbjct: 353  SLPPEAKGAYNVSKGSSPIEKLNLAWESLQSEVDSLIDTTYIRNAN-----VAGLKQIIE 407

Query: 373  KKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRD 432
            KK G+ R  +MGKRVN++ R+VI+PDP L ++EIGIP  FA  LTYP  VT WNV +LR 
Sbjct: 408  KKTGIIRMHMMGKRVNFSARTVITPDPNLNIDEIGIPEVFAKHLTYPVPVTSWNVEELRK 467

Query: 433  SIINGAEIHPGAT--HYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
             I+NG ++HPGA    Y D         N   + SI ++L T          D    F G
Sbjct: 468  MIMNGPDVHPGAVMVEYEDGTIKRINTNNTTQQESILKRLLTP---------DKIVGFRG 518

Query: 491  -KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
             K V+RHL +GDV+L+NRQPTLHKPSIMAH  RVLKGEKT R+HYANC  YNADFDGDEM
Sbjct: 519  VKRVHRHLCNGDVLLLNRQPTLHKPSIMAHTARVLKGEKTFRLHYANCKAYNADFDGDEM 578

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N HFPQ+E++R+EAYN+VN  NQY+ P +G PL  LIQDH+++   L+ +  F N  ++ 
Sbjct: 579  NAHFPQNELARSEAYNLVNVCNQYLVPKDGTPLSGLIQDHMIAGVKLSLRGRFFNEVDYK 638

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
              ++ +      L + TGK             ++ L PAI KP  LW+GKQ+++ V  +I
Sbjct: 639  HFVFQA------LANKTGK-------------IILLPPAIIKPCQLWSGKQILSTVFINI 679

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
                          +P+   +    A  +         K  +T    K K G  + V   
Sbjct: 680  --------------IPEGHERINLTASAKIS------AKAWQTAPPRKWKGGGSRFV--- 716

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTA 787
                             +SE +++I   +L+ GV+DK  +    YGLVH + ELYG   A
Sbjct: 717  -------------NPNTMSEAEVVIRGGELLVGVLDKTHYGATPYGLVHCMYELYGGVYA 763

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED 847
              LLSAL++LFT FLQ  GFT GV D+L ++  ++ R+  + G+ +IG  V   AL++  
Sbjct: 764  TGLLSALAKLFTRFLQKEGFTLGVHDILTVEKADQRRRQIIEGARKIGLDVITTALDMPR 823

Query: 848  GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKN 907
             + I+ I  K            A V   D +  + L+  T + +    L  GL+    +N
Sbjct: 824  DSPIEEIVDKIRENSVKNPKWRATV---DRQYKTALDSFT-NDINKTCLPAGLVLKFPEN 879

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
             + LM  SGAKG+ VN  QIS  LGQ ELEGKR P M+SGK+LPSF  +++APRAGGFI 
Sbjct: 880  NLQLMVQSGAKGTTVNTMQISCLLGQIELEGKRPPVMISGKSLPSFPIFEFAPRAGGFID 939

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
             RF+TG++PQE++FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE L + YD +VRD+D 
Sbjct: 940  GRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLTVGYDLTVRDSDK 999

Query: 1028 SIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNK--------------------- 1066
             ++QF YGEDG+D+ +  F++    +   +  +G    K                     
Sbjct: 1000 CVIQFLYGEDGMDISKLQFLNSKQLVFLADNSKGMIDKKALKMLKDEHQKSVKAHKQQLA 1059

Query: 1067 -FCDKGSHTFVMGR---------------------NQEM--IYKKCSGQL-DASNAYIME 1101
             +C+K  H     R                      +EM  ++KK    + D+     + 
Sbjct: 1060 DWCEKFGHPLQRERKSPFSLFSSVVRAKTKGTDFGTKEMTKLWKKADKDIKDSFRQQCIP 1119

Query: 1102 LPD-------------ALKDNAEKFADKFLS-NEMAKQDFLKLVKHKFVLSLAQPGEPVG 1147
             PD             +L +  E+  + + S N+   + F  ++K K + SL  PGEPVG
Sbjct: 1120 CPDPVNSIYQPDHHFGSLNEKLEELMNTYQSTNKKQTKQFQNMLKLKAMRSLCAPGEPVG 1179

Query: 1148 LLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            LLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +ASK+IKTP +  P L
Sbjct: 1180 LLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMASKNIKTPSMEIPFL 1236



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 32/48 (66%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFK 48
           C TC +  + CPGHFG+I+L +PV NP+ + ++ T+L+  C  C  F+
Sbjct: 70  CGTCRKNLYFCPGHFGYIELPLPVVNPIFYRMIGTILRMACLSCFRFQ 117


>gi|402222556|gb|EJU02622.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731 SS1]
          Length = 1749

 Score =  630 bits (1625), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 391/989 (39%), Positives = 531/989 (53%), Gaps = 155/989 (15%)

Query: 276  KAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAK 335
            +A   IFFL V+ VPP +FR P+K G+ + EHPQ  LL++VL  +  + +  V   +  +
Sbjct: 393  QANADIFFLSVLPVPPTRFRPPAKMGEQLFEHPQNELLARVLATSYRIRDVNVQLAEITR 452

Query: 336  ---------------VIVARWMNLQQSVNVLFD-GKNAAGQRD---MASGICQLLEKKEG 376
                           V+  R + LQ  VN   D GKN    R       G+ Q LEKKEG
Sbjct: 453  KGSAAGPEETDKLLAVLFERLVQLQVDVNSFMDSGKNPQPVRQGKKPPEGVKQRLEKKEG 512

Query: 377  LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
            LFR  +MGKRVNYA RSVISPD  +  +EIGIPP FA +LT+ E VT  N+ +L+  + N
Sbjct: 513  LFRMNMMGKRVNYAARSVISPDVNIETSEIGIPPVFARKLTFAEPVTAQNLTELQQLVEN 572

Query: 437  GAEIHPGAT---------HYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNE 487
            G   +PGAT           LDKLS          R ++   L T+      PG+  + +
Sbjct: 573  GPRKYPGATMVEYEDGSRQSLDKLS-------DSQRAAVAATLQTA-----MPGRGGEGQ 620

Query: 488  ------FEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYN 541
                  +  K VYRHL+DGD +L+NRQPTLHKPSIMAH  +VLKGEKT+R+HYANC +YN
Sbjct: 621  GMIRSGWVNKKVYRHLRDGDYLLLNRQPTLHKPSIMAHRAKVLKGEKTIRLHYANCESYN 680

Query: 542  ADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDT 601
            ADFDGDEMN+HF Q+ ++RAEA +I N +NQY+ P  G+PLR LIQDH+VSA  +T +  
Sbjct: 681  ADFDGDEMNIHFAQNHIARAEAMSIANTDNQYLVPKTGEPLRGLIQDHVVSAFFMTAQ-- 738

Query: 602  FLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQV 661
                D F                FT +  Q+++                +PE  +TG  +
Sbjct: 739  ----DTF----------------FTREEYQQIIY------------GALRPENNYTGGGI 766

Query: 662  ITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSG 721
            +  V   I + RP +    G ++     K   N         N + K      M +    
Sbjct: 767  VLTVPPTIWKPRPLWT---GKQIISTILK---NITPARAEGLNLQAKAKIGGNMWR---- 816

Query: 722  KKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQ 779
                                   K+  E  +L+   +L+ GVIDKAQ   + +G+ H+V 
Sbjct: 817  -----------------------KDSEEGVVLVMDGELITGVIDKAQIGASAHGITHSVY 853

Query: 780  ELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRV- 838
            ELYG  TAG L+S   RLFT FLQ   FTC +DDLL+  + E +RK  +   + +G +  
Sbjct: 854  ELYGPETAGKLISIWGRLFTKFLQHRAFTCRMDDLLLSPEGEEKRKKLMESGQSLGLKAA 913

Query: 839  -----HLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVIN 893
                  L  LE  + AE    ++K  I   +R   +  +A  DM    +LN+ T   +  
Sbjct: 914  VSNFPDLAQLETREAAE----QVKDRISSILRD--EVKMAGLDMTYRGELNQLTVE-IEK 966

Query: 894  ELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSF 953
              L  GL++P   N +  M  +GAKG  VN +QISS LGQQ+LEG+R P M+SGKTLPSF
Sbjct: 967  ACLPGGLVRPFPVNHMQAMIMAGAKGKPVNARQISSSLGQQDLEGRRPPVMISGKTLPSF 1026

Query: 954  HPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLEC 1013
             P++ +  AGG++  RFLTGLRPQE+YFHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE 
Sbjct: 1027 QPFETSAEAGGYVGSRFLTGLRPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEG 1086

Query: 1014 LKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAAR----------------- 1056
             ++ YD++VR +D S++QF YG D +DV + + +++FD                      
Sbjct: 1087 ARVHYDHTVRSSDNSVLQFQYGGDALDVIKQAQLTQFDFAVQNLESYVNNFNPKDVWNKL 1146

Query: 1057 --ERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFA 1114
              E      +      G HT V+ +     Y         S A+  E+   ++ N     
Sbjct: 1147 DVETALSHMKKALKKPGKHTPVLAK-----YSPSRFLGATSEAFAREVETYIEKNPRGLI 1201

Query: 1115 DKFLS---NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGR 1171
             K  +   + M    F  L+  +++ SL +PGE VGLLA+Q +GEPSTQMTLNTFH AG 
Sbjct: 1202 KKKKAEGKSGMPAAAFRSLMNVRYMRSLVEPGEAVGLLAAQCIGEPSTQMTLNTFHFAGH 1261

Query: 1172 GEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
            G  NVTLGIPRL+EI+  AS   KTP +T
Sbjct: 1262 GAANVTLGIPRLREIVMTASTKPKTPTMT 1290



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 47/76 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    F CPGH+GHI+L  PVY+PL     YTLL+  C +CH FK SR  V +C  K
Sbjct: 63  CATCRLTYFTCPGHYGHIELPSPVYHPLFMIPCYTLLRTCCLYCHKFKVSRITVARCAAK 122

Query: 61  LELIIKGDIIAAKSLD 76
           L L+  G + A+ ++D
Sbjct: 123 LRLLEHGLLKASLAVD 138


>gi|31753226|gb|AAH53744.1| Polymerase (RNA) I polypeptide A [Mus musculus]
          Length = 1717

 Score =  629 bits (1621), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 397/1094 (36%), Positives = 572/1094 (52%), Gaps = 165/1094 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHIDL + VYNP LF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CATCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+ +P   ++  +                    +E+
Sbjct: 124  LRVLEVGALQAVYELERILSRFLEETGDPSAFEIQEEL-------------------EEY 164

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
            TS      K+     L  + T   N C++++  +++  F   HM     PH         
Sbjct: 165  TS------KILQNNLLGSQGTHVKNVCESRSKLVAQ--FWKTHMAAKQCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L            ++  T     D       +G    P G  K 
Sbjct: 208  -CKTGRSVVRKEHNSKL----------IITYPATVHKKSDQEGTELPEGVPEAP-GIDKA 255

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L PS  ++ +  +W+NE F L    S +   G       S+FFL  ++VPP +
Sbjct: 256  QMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIY-----------------LANAYVNQPDNAKV 336
            +R  ++ GD +  + QTV L  V++  +                  +    +++ +++ V
Sbjct: 316  YRPVNRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDSSV 375

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             + R                  W+ LQ  VN++FD +      +   GI Q+LEKKEGLF
Sbjct: 376  AIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMDKLMLEKYPGIRQILEKKEGLF 435

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 436  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 495

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 496  NVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLT-------PATGAPKPQGTKVVCRH 548

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 549  VKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 608

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y   
Sbjct: 609  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRG- 667

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L            PAI KP PLWTGKQV++ +L +I       
Sbjct: 668  --------LTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI------- 702

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D+                     +  N   K K G K  V E KP    +
Sbjct: 703  -------IPEDY---------------------APLNLSGKAKIGSKAWVKE-KPRPIPD 733

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
             + +      + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L
Sbjct: 734  FDPDS-----MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCL 788

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT GV+D+L+  + +  R++ +  S + G +    AL L + A  D 
Sbjct: 789  ARLFTAYLQLYRGFTLGVEDILVKPNADVVRQHIIEESTQCGPQAVKAALSLPETASCDE 848

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            I+ K +     +   D  +   DMK   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 849  IQGKWQDAHLSKDQRDFNM--IDMKFKEEVN-HYSNEINKACMPLGLHRQFPENNLQMMV 905

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 906  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 965

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            +RP E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L I YD +VRD+DGS+VQF 
Sbjct: 966  IRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFL 1025

Query: 1034 YGEDGVDVHQTSFI 1047
            YGEDG+D+ +T F+
Sbjct: 1026 YGEDGLDIPKTQFL 1039



 Score =  113 bits (283), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 78/111 (70%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL  PGE VGLLA+QS
Sbjct: 1166 VSETFEKKIDDFSQEWAAQAERSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQS 1225

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+ 
Sbjct: 1226 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF 1276


>gi|148666542|gb|EDK98958.1| RNA polymerase 1-4 [Mus musculus]
          Length = 1717

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 397/1094 (36%), Positives = 571/1094 (52%), Gaps = 165/1094 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHIDL + VYNP LF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CATCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+ +P   ++  +                    +E+
Sbjct: 124  LRVLEVGALQAVYELERILSRFLEETGDPSAFEIQEEL-------------------EEY 164

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
            TS      K+     L  + T   N C++++  +++  F   HM     PH         
Sbjct: 165  TS------KILQNNLLGSQGTHVKNVCESRSKLVAQ--FWKTHMAAKQCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L            ++  T     D       +G    P G  K 
Sbjct: 208  -CKTGRSVVRKEHNSKL----------IITYPATVHKKSDQEGTELPEGVPEAP-GIDKA 255

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L PS  ++ +  +W+NE F L    S +   G       S+FFL  ++VPP +
Sbjct: 256  QMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIY-----------------LANAYVNQPDNAKV 336
            +R  ++ GD +  + QTV L  V++  +                  +    +++ +++ V
Sbjct: 316  YRPVNRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDSSV 375

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             + R                  W+ LQ  VN++FD +      +   GI Q+LEKKEGLF
Sbjct: 376  AIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMDKLMLEKYPGIRQILEKKEGLF 435

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 436  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 495

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 496  NVHPGASMVINEDGSRTALSAVDAAQREAVAKQLLT-------PATGAPKPQGTKVVCRH 548

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 549  VKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 608

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y   
Sbjct: 609  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRG- 667

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L            PAI KP PLWTGKQV++ +L +I       
Sbjct: 668  --------LTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI------- 702

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D+                     +  N   K K G K  V E KP    +
Sbjct: 703  -------IPEDY---------------------APLNLSGKAKIGSKAWVKE-KPRPIPD 733

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
             + +      + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L
Sbjct: 734  FDPDS-----MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCL 788

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT GV+D+L+  + +  R+  +  S + G +    AL L + A  D 
Sbjct: 789  ARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQCGPQAVKAALSLPETASCDE 848

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            I+ K +     +   D  +   DMK   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 849  IQGKWQDAHLSKDQRDFNM--IDMKFKEEVN-HYSNEINKACMPLGLHRQFPENNLQMMV 905

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 906  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 965

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            +RP E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L I YD +VRD+DGS+VQF 
Sbjct: 966  IRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFL 1025

Query: 1034 YGEDGVDVHQTSFI 1047
            YGEDG+D+ +T F+
Sbjct: 1026 YGEDGLDIPKTQFL 1039



 Score =  113 bits (283), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 78/111 (70%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL  PGE VGLLA+QS
Sbjct: 1166 VSETFEKKIDDFSQEWAAQAERSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQS 1225

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+ 
Sbjct: 1226 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF 1276


>gi|116283856|gb|AAH34785.1| Polr1a protein [Mus musculus]
          Length = 1366

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 400/1104 (36%), Positives = 577/1104 (52%), Gaps = 167/1104 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHIDL + VYNP LF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CATCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+ +P   ++  +                    +E+
Sbjct: 124  LRVLEVGALQAVYELERILSRFLEETGDPSAFEIQEEL-------------------EEY 164

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
            TS      K+     L  + T   N C++++  +++  F   HM     PH         
Sbjct: 165  TS------KILQNNLLGSQGTHVKNVCESRSKLVAQ--FWKTHMAAKQCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L            ++  T     D       +G    P G  K 
Sbjct: 208  -CKTGRSVVRKEHNSKL----------IITYPATVHKKSDQEGTELPEGVPEAP-GIDKA 255

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L PS  ++ +  +W+NE F L    S +   G       S+FFL  ++VPP +
Sbjct: 256  QMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIY-----------------LANAYVNQPDNAKV 336
            +R  ++ GD +  + QTV L  V++  +                  +    +++ +++ V
Sbjct: 316  YRPVNRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDSSV 375

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             + R                  W+ LQ  VN++FD +      +   GI Q+LEKKEGLF
Sbjct: 376  AIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMDKLMLEKYPGIRQILEKKEGLF 435

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 436  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 495

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 496  NVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLT-------PATGAPKPQGTKVVCRH 548

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 549  VKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 608

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y   
Sbjct: 609  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRG- 667

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L            PAI KP PLWTGKQV++ +L +I       
Sbjct: 668  --------LTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI------- 702

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D+                     +  N   K K G K  V E KP    +
Sbjct: 703  -------IPEDY---------------------APLNLSGKAKIGSKAWVKE-KPRPIPD 733

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
             + +      + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L
Sbjct: 734  FDPD-----SMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCL 788

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT GV+D+L+  + +  R++ +  S + G +    AL L + A  D 
Sbjct: 789  ARLFTAYLQLYRGFTLGVEDILVKPNADVVRQHIIEESTQCGPQAVKAALSLPETASCDE 848

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            I+ K +     +   D  +   DMK   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 849  IQGKWQDAHLSKDQRDFNM--IDMKFKEEVN-HYSNEINKACMPLGLHRQFPENNLQMMV 905

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 906  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 965

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            +RP E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L I YD +VRD+DGS+VQF 
Sbjct: 966  IRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFL 1025

Query: 1034 YGEDGVDVHQTSFIS--KFDALAA 1055
            YGEDG+D+ +T F+   +F  LA+
Sbjct: 1026 YGEDGLDIPKTQFLQPKQFPFLAS 1049



 Score =  113 bits (282), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 78/111 (70%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL  PGE VGLLA+QS
Sbjct: 1166 VSETFERKIDDFSQEWAAQAERSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQS 1225

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+ 
Sbjct: 1226 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF 1276


>gi|256985188|ref|NP_033114.3| DNA-directed RNA polymerase I subunit RPA1 [Mus musculus]
 gi|56405300|sp|O35134.2|RPA1_MOUSE RecName: Full=DNA-directed RNA polymerase I subunit RPA1; Short=RNA
            polymerase I subunit A1; AltName: Full=DNA-directed RNA
            polymerase I largest subunit; AltName: Full=DNA-directed
            RNA polymerase I subunit A; AltName: Full=RNA polymerase
            I 194 kDa subunit; Short=RPA194
          Length = 1717

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 397/1094 (36%), Positives = 571/1094 (52%), Gaps = 165/1094 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHIDL + VYNP LF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CATCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+ +P   ++  +                    +E+
Sbjct: 124  LRVLEVGALQAVYELERILSRFLEETGDPSAFEIQEEL-------------------EEY 164

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
            TS      K+     L  + T   N C++++  +++  F   HM     PH         
Sbjct: 165  TS------KILQNNLLGSQGTHVKNVCESRSKLVAQ--FWKTHMAAKQCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L            ++  T     D       +G    P G  K 
Sbjct: 208  -CKTGRSVVRKEHNSKL----------IITYPATVHKKSDQEGTELPEGVPEAP-GIDKA 255

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L PS  ++ +  +W+NE F L    S +   G       S+FFL  ++VPP +
Sbjct: 256  QMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIY-----------------LANAYVNQPDNAKV 336
            +R  ++ GD +  + QTV L  V++  +                  +    +++ +++ V
Sbjct: 316  YRPVNRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDSSV 375

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             + R                  W+ LQ  VN++FD +      +   GI Q+LEKKEGLF
Sbjct: 376  AIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMDKLMLEKYPGIRQILEKKEGLF 435

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 436  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 495

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 496  NVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLT-------PATGAPKPQGTKVVCRH 548

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 549  VKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 608

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y   
Sbjct: 609  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRG- 667

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L            PAI KP PLWTGKQV++ +L +I       
Sbjct: 668  --------LTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI------- 702

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D+                     +  N   K K G K  V E KP    +
Sbjct: 703  -------IPEDY---------------------APLNLSGKAKIGSKAWVKE-KPRPIPD 733

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
             + +      + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L
Sbjct: 734  FDPDS-----MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCL 788

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT GV+D+L+  + +  R+  +  S + G +    AL L + A  D 
Sbjct: 789  ARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQCGPQAVKAALSLPETASCDE 848

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            I+ K +     +   D  +   DMK   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 849  IQGKWQDAHLSKDQRDFNM--IDMKFKEEVN-HYSNEINKACMPLGLHRQFPENNLQMMV 905

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 906  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 965

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            +RP E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L I YD +VRD+DGS+VQF 
Sbjct: 966  IRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFL 1025

Query: 1034 YGEDGVDVHQTSFI 1047
            YGEDG+D+ +T F+
Sbjct: 1026 YGEDGLDIPKTQFL 1039



 Score =  113 bits (283), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 78/111 (70%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL  PGE VGLLA+QS
Sbjct: 1166 VSETFEKKIDDFSQEWAAQAERSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQS 1225

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+ 
Sbjct: 1226 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF 1276


>gi|2330007|gb|AAB66718.1| RNA polymerase I largest subunit [Mus musculus]
          Length = 1717

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 397/1094 (36%), Positives = 571/1094 (52%), Gaps = 165/1094 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHIDL + VYNP LF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CATCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+ +P   ++  +                    +E+
Sbjct: 124  LRVLEVGALQAVYELERILSRFLEETGDPSAFEIQEEL-------------------EEY 164

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
            TS      K+     L  + T   N C++++  +++  F   HM     PH         
Sbjct: 165  TS------KILQNNLLGSQGTHVKNVCESRSKLVAQ--FWKTHMAAKQCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L            ++  T     D       +G    P G  K 
Sbjct: 208  -CKTGRSVVRKEHNSKL----------IITYPATVHKKSDQEGTELPEGVPEAP-GIDKA 255

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L PS  ++ +  +W+NE F L    S +   G       S+FFL  ++VPP +
Sbjct: 256  QMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIY-----------------LANAYVNQPDNAKV 336
            +R  ++ GD +  + QTV L  V++  +                  +    +++ +++ V
Sbjct: 316  YRPVNRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDSSV 375

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             + R                  W+ LQ  VN++FD +      +   GI Q+LEKKEGLF
Sbjct: 376  AIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMDKLMLEKYPGIRQILEKKEGLF 435

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 436  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 495

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 496  NVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLT-------PATGAPKPQGTKVVCRH 548

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 549  VKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 608

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y   
Sbjct: 609  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRG- 667

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L            PAI KP PLWTGKQV++ +L +I       
Sbjct: 668  --------LTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI------- 702

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D+                     +  N   K K G K  V E KP    +
Sbjct: 703  -------IPEDY---------------------APLNLSGKAKIGSKAWVKE-KPRPIPD 733

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
             + +      + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L
Sbjct: 734  FDPDS-----MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCL 788

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT GV+D+L+  + +  R+  +  S + G +    AL L + A  D 
Sbjct: 789  ARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQCGPQAVKAALSLPETASCDE 848

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            I+ K +     +   D  +   DMK   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 849  IQGKWQDAHLSKDQRDFNM--IDMKFKEEVN-HYSNEINKACMPLGLHRQFPENNLQMMV 905

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 906  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 965

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            +RP E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L I YD +VRD+DGS+VQF 
Sbjct: 966  IRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFL 1025

Query: 1034 YGEDGVDVHQTSFI 1047
            YGEDG+D+ +T F+
Sbjct: 1026 YGEDGLDIPKTQFL 1039



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/111 (49%), Positives = 77/111 (69%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL  PGE VGLLA+QS
Sbjct: 1166 VSETFEKKIDDFSQEWAAQAERSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQS 1225

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            +GEPSTQMTLNTFH AGRGE NVTLGIPRL+EIL +AS +IKTP+++ P+ 
Sbjct: 1226 IGEPSTQMTLNTFHFAGRGETNVTLGIPRLREILMVASANIKTPMMSVPVF 1276


>gi|294942134|ref|XP_002783393.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
            marinus ATCC 50983]
 gi|239895848|gb|EER15189.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
            marinus ATCC 50983]
          Length = 1549

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 406/1065 (38%), Positives = 580/1065 (54%), Gaps = 172/1065 (16%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            + P+ V++++ KLW  E ++  F+        G+  G  IFF+  ++VPP K R    GG
Sbjct: 96   VTPTYVRNLLHKLWREERQVLEFLF---PASVGR--GEDIFFMQNIVVPPNKLRPLRFGG 150

Query: 302  DSVMEH----PQTVLLSKVLQANIYL------------------------ANAYVNQPDN 333
            DS          TV L  +L++N+ L                         N   ++ + 
Sbjct: 151  DSDDNQGFLPASTVCLKNILESNLLLRQLLETDQEALENPNEREKAGDALPNLISDEDET 210

Query: 334  AK------------VIVARWMNLQQSVNVLFDGKNA--AGQRDMASGICQLLEKKEGLFR 379
             K             +    ++LQ +VN   D   +  A  + +A G+ QLLE+K+GLFR
Sbjct: 211  MKPVDNTPQRGPMTTLGTALIDLQNNVNNYLDSAKSGKAQNKVVAFGVRQLLERKQGLFR 270

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
             K+MGKRVNYA RSVISPD  L  N+IG+P + AL+LT PE V  +NV  LR  + NG +
Sbjct: 271  MKMMGKRVNYAARSVISPDVSLETNQIGLPMFAALQLTVPEPVNSFNVDYLRALVENGPD 330

Query: 440  IHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN-EFEGKMVYRHLQ 498
             +PGA   +         P+ K+ +S+  +    R AI +    S N + + ++V RH++
Sbjct: 331  KYPGAAAVVF--------PDGKL-VSLKGRQPHQRKAIARSLYQSTNPDKKPRVVLRHVR 381

Query: 499  DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
            DGD +LVNRQPTLHKP IMA  V+VL  EKT+RMHY+NC+T+NADFDGDE+N+H PQD  
Sbjct: 382  DGDPLLVNRQPTLHKPGIMALFVKVLSKEKTIRMHYSNCNTFNADFDGDEINLHCPQDSN 441

Query: 559  SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
            +RAEA  I +A++QY+ P++G PLR LIQDH+VS   LT +D F+ + E   L+Y++ + 
Sbjct: 442  ARAEAIYIASADHQYLGPTSGKPLRGLIQDHVVSGVFLTARDHFMRKTEVQNLIYTA-MR 500

Query: 619  SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVV 678
            ++  G  +G  G    + +  + V+   P I KP+ LWTGKQVIT  L  + +       
Sbjct: 501  AAIEGDTSGIAG----VPKDFRIVMEP-PVIVKPQTLWTGKQVITIFLKSLIK------- 548

Query: 679  ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 738
                      F T             DK  ++  N   K K+          PG+     
Sbjct: 549  ----------FATH----------STDKAIVNGFNHHAKAKT----------PGDLWGGV 578

Query: 739  KNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSR 796
             + +KE    E+ + I   +L+ GV+DKA F     GL H   EL G   AG LL+ + R
Sbjct: 579  SDGNKE----EQMVTIRDTELIEGVLDKASFGATANGLTHLFYELCGPKAAGLLLTGMGR 634

Query: 797  LFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEE-----IGKRVHLEALELEDGAEI 851
            + T++LQ HGFTC + DLLI  + +  R   L  + E     I   V+  + E  +   +
Sbjct: 635  MLTLYLQYHGFTCAMRDLLITPEGDEARLQMLRKAREDSWNKIRDWVNENSPEEANVKTL 694

Query: 852  DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
               KL+ EIE++  G  D A     M+ T + N   S  +I+ L  +G + P   N  S 
Sbjct: 695  H--KLQKEIERS--GMNDQASC---MQRTLRFNTPCSKKLIDILFPKGQVSPFPDNCFSA 747

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            M ++GAKGSKVN   I + LGQQELEG R PRM + + LPSF  +D  PRAGG+I DRFL
Sbjct: 748  MVSTGAKGSKVNHSMIDAMLGQQELEGHRAPRMRNQRFLPSFAQYDIGPRAGGYITDRFL 807

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            TG RPQE+++HCMAGREGLVDTAVKT+RSGYLQRCL+KNLE + I+YDY+VRD D SIV+
Sbjct: 808  TGYRPQEFFYHCMAGREGLVDTAVKTARSGYLQRCLVKNLEGITINYDYTVRDTDSSIVE 867

Query: 1032 FCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCS-- 1089
            F YGEDG+DV + S + +FD L        +      ++      M  N   +Y+K +  
Sbjct: 868  FLYGEDGMDVTKVSHLEQFDVLDENSAFMAKSAAVAKEEAK----MESNLPALYRKWAEK 923

Query: 1090 -----------GQLDASN----------AYIME---------------LP-----DALKD 1108
                        +++AS+          A++++               LP      A+ +
Sbjct: 924  PQSGRRTKDLVKEVNASDKLRDEEKEHIAFVVKDTHTNGGKAPPMNSMLPPWRFTGAMSE 983

Query: 1109 NAEKFADKFLSN-------EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQM 1161
              E    ++LS+       +M  ++F  ++ HK+  +LA PGE VG LA+Q +GEPSTQM
Sbjct: 984  REENALTEYLSHRPEELEKKMPTEEFRDVIMHKYARTLADPGEAVGTLAAQGMGEPSTQM 1043

Query: 1162 TLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVG 1206
            TLNTFHLAG G +NVTLGIPRL+EI+  AS+ ++TP +  P+L G
Sbjct: 1044 TLNTFHLAGHGGVNVTLGIPRLREIVQTASRHLETPAMEFPVLGG 1088


>gi|324499651|gb|ADY39856.1| DNA-directed RNA polymerase I subunit RPA1 [Ascaris suum]
          Length = 1339

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 457/1327 (34%), Positives = 646/1327 (48%), Gaps = 234/1327 (17%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEK--CV 58
            C+TC Q+   CPGH G+I L VPV+NPLLF+  Y+L+K  C  CH F      V     +
Sbjct: 71   CETCYQQGTYCPGHMGYIQLDVPVFNPLLFSFTYSLMKGTCVHCHRFTCQTNGVAAKILL 130

Query: 59   RKLELIIKGDIIAAKSLDLDLPSESSNPEDS----------------------DVSNKSS 96
             +L  +  G +  A  L+  +  + S+  +S                      ++S KS+
Sbjct: 131  AQLRALDLGMLSTAHQLESYISEKFSHTGNSIGDTPQLSNEMTAITELDAIFAELSGKST 190

Query: 97   CS----MVTPRGNYDNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISK 152
             S    MV P  N   ++        SL  A  +  L + +K    +C  C   N  +  
Sbjct: 191  SSLQKDMVKPMKNAVELKR-------SLMHAFCRDHLFKHMK----RCKLCHGGNGVLRN 239

Query: 153  PTFGWIHMNGMPHADIRANLIRG-CNLGETFSGGEEEKDLGASSDVDAPETHS--FNGTF 209
                 I ++    A  RA  +    N        E E D    +DVD  E      N   
Sbjct: 240  DGGRCILIDFSGVATTRAAKMSAKFNAVNDLMEQEVEVD---PNDVDEKEGDKKLLNDNS 296

Query: 210  PGT-QDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDM 268
             G   DTA     K   AV +G  ++    +      +V++    +W+N+      +  +
Sbjct: 297  LGMLNDTAELTLHKQLAAVENGTCEKLAWRA-----VEVREHFRMVWKNDAAFLKKLFPL 351

Query: 269  QQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYV 328
                  +     + F   VLVPP KFR          E+PQTV L K+L+A   +    +
Sbjct: 352  FDCDDSEHCPMDVLFCEKVLVPPTKFRPIRYFKGDKFENPQTVNLRKLLEATETMRAVRM 411

Query: 329  ------NQPDNAKVIVAR-------------WMNLQQSVNVLFDGK--NAAGQRDMASGI 367
                  N     ++I  R             ++ LQQ +  +FD      + QR +  GI
Sbjct: 412  AVSGGKNNAALMELISTRVPGKTMREKMHNSYLVLQQRIGAIFDQDLDRTSDQRSLIPGI 471

Query: 368  CQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNV 427
             Q+LEKK+GLFR  +MGKRVN+ACRSVI+PDPYL ++EIGIP  FA +LT+PE  +  N+
Sbjct: 472  KQILEKKQGLFRMNMMGKRVNFACRSVITPDPYLDIDEIGIPEIFAKKLTFPEPASLINL 531

Query: 428  VKLRDSIINGAEIHPGATHYLDK--LSTMRLPPNKKMRISIGRKL---DTSRGAIVQPGK 482
             KLR  + NG   HPGA   L       + L   ++ R +  ++L   +T+R  +  P K
Sbjct: 532  PKLRKLVKNGPAKHPGANFVLRPGGFKQVLLDEKREERFAEAKRLQPANTTR--LAHPVK 589

Query: 483  DSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNA 542
                      V RHL  GD++L+NRQP+LHKPSIM H VRVL G++ LRM+YA C  YNA
Sbjct: 590  ----------VLRHLDRGDLMLMNRQPSLHKPSIMGHRVRVLTGQRALRMNYAPCKAYNA 639

Query: 543  DFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTF 602
            DFDGDEMN HF Q+ +++ E   I N  + ++ P +G PL  LIQDH+VS  LLT +  F
Sbjct: 640  DFDGDEMNGHFVQNRIAQTEVAEIANVGSNFLVPKDGTPLLGLIQDHVVSGVLLTLRGRF 699

Query: 603  LNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI 662
             N+++F  L+ ++   +S          QR+        VLP  P++ KP+ LW+GKQVI
Sbjct: 700  FNKEDFMHLVLAAFAQTS----------QRI--------VLPP-PSMLKPQKLWSGKQVI 740

Query: 663  -TAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSG 721
             T +LN I RG+P   +    K P   +K                G L            
Sbjct: 741  STILLNCIPRGQPLINLTSKAKTPLSCWKV---------------GNLP----------- 774

Query: 722  KKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQ 779
                                + + E+SE +++  + +L+ GV+DK  +    YGL+H   
Sbjct: 775  --------------------APKFEMSESEVIFRQAELLVGVLDKQHYGSTQYGLIHCCW 814

Query: 780  ELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVH 839
            ELYG   A ++LS  SRLFT  LQ HGFT GV D+L+ K  +++RK  +    + G  V 
Sbjct: 815  ELYGHRCATSILSCFSRLFTTHLQYHGFTLGVADILVNKKADKQRKRVIRALRKCGDDVV 874

Query: 840  LEALELEDGAEIDPIKLKSEIEKAMRG------GGDAAVAYFDMKMTSQLNKHTSSSVIN 893
             E   L+  A       ++EI   M G      G D +V   D +M  +LNK  S  + +
Sbjct: 875  KECFGLDTDAS------QNEIRDVMAGAYCNPRGEDQSVQQLDFRMKEKLNKF-SEQINS 927

Query: 894  ELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSF 953
              +  GL++   +N + +M  SG+KG+ VN  QIS  LGQ ELEG+R P  V+G+TLPSF
Sbjct: 928  ACVPIGLIRSFPRNALQMMILSGSKGTMVNSMQISCGLGQIELEGRRPPITVTGRTLPSF 987

Query: 954  HPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLEC 1013
              +D +PRAGGF+  RFLTG+ PQE +FH MAGREGL+DTAVKTSRSGYLQRC++K+LE 
Sbjct: 988  RAFDTSPRAGGFVDQRFLTGINPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIVKHLEG 1047

Query: 1014 LKISYDYSVRDADGSIVQ--------------------FCYGEDGVDVHQTSFISKFDAL 1053
            L   YD +VRD D S+VQ                    F +  D + V +   + K DA+
Sbjct: 1048 LVAHYDSTVRDHDNSVVQFRYGEDGMDVCKCTFMNPKQFDFLADNLHVLRARVVPK-DAI 1106

Query: 1054 -----------AARERGRGRGRNKFCDKGSHT----------------------FVMGRN 1080
                       A R+  + R RN    +  +                       F +  +
Sbjct: 1107 ESEWNFRNSEKAYRKVKKWRKRNAGNSEKRYVGGFIEFSKEHRGMSKRELVDMWFALEAD 1166

Query: 1081 QEMIY-----KKCSGQLDAS---NAYIMELPDALKDNAEKFADKFLSNE--MAKQDFLKL 1130
            +   Y     K+C   +D        +  LP+ + D  + +  K    +  +  + F K 
Sbjct: 1167 RRAEYEGIAAKRCPDMVDEKMNPTCTLGALPEKMLDEIDAYVKKKAETDADIPLETFRKT 1226

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            +  K + S   PGE VGLLA+QS+GEPSTQMTLNTFH AGRGEMNV LGIPRL+EIL  A
Sbjct: 1227 LFWKGLRSRCDPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVALGIPRLREILMTA 1286

Query: 1191 SKDIKTP 1197
            S  IKTP
Sbjct: 1287 STSIKTP 1293


>gi|214028086|gb|ACJ63312.1| RNA polymerase I large subunit [Ceratophyllum demersum]
          Length = 538

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 338/613 (55%), Positives = 414/613 (67%), Gaps = 80/613 (13%)

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            VHFPQDE+SRAEAYNIVNA+ QY+ P++G P+R LIQDHI+SA LLTK DTFL R+E+ Q
Sbjct: 1    VHFPQDEISRAEAYNIVNAHEQYIVPTSGKPIRGLIQDHIISAVLLTKIDTFLTREEYHQ 60

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            LLYSS VS++   SF G  G+++    SE E+ P+LPAIWKP PLWTGKQVIT++L HIT
Sbjct: 61   LLYSSCVSANAQSSFQGNSGKKISAIISEDEIEPILPAIWKPVPLWTGKQVITSILCHIT 120

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
            RGR PF V                                       +  GK K    G 
Sbjct: 121  RGRQPFTV---------------------------------------ENCGKIKPNYLGS 141

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTL 790
              EEK                LLI KN+L+ GVIDKAQF  YGLVHTVQELYGSNTAG L
Sbjct: 142  NVEEK---------------NLLIRKNELIHGVIDKAQFEMYGLVHTVQELYGSNTAGVL 186

Query: 791  LSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAE 850
            LS  SRLFTVFLQMHGFTCGVDDLLI+   +++R   L  SE+I +  H   L  ++G++
Sbjct: 187  LSVFSRLFTVFLQMHGFTCGVDDLLIIPKSDKKRSRRLKQSEKISEDAHANFLGTKEGSQ 246

Query: 851  IDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS 910
             DPIKL+ E+EK +R  GD AV   D  M++ L + TS  V NELL  GL KP  KN +S
Sbjct: 247  -DPIKLQMELEKVLRRHGDVAVTRLDRMMSNALGELTSK-VTNELLPNGLSKPFPKNCLS 304

Query: 911  LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRF 970
            LMTT+GAKGS VNF QISS LGQQELEGKRVPRMVSGKTLP F PWD + RAGG+I DR+
Sbjct: 305  LMTTTGAKGSMVNFNQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDSSSRAGGYIGDRY 364

Query: 971  LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIV 1030
            LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK+LE LK+ YD++VRD+DGSIV
Sbjct: 365  LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKSLESLKVCYDHTVRDSDGSIV 424

Query: 1031 QFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSG 1090
            QF YGEDGVDV +TSF+++F+ +AA +      + K C         G+N++        
Sbjct: 425  QFTYGEDGVDVCKTSFLTQFEMIAANQ---DVVQEKLC---------GKNKD-------A 465

Query: 1091 QLDASNAYIMELPDALKDNAEKF-----ADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEP 1145
            +L   + Y+   P  L++ A+ +      +K  S  ++K+ F+KL+K K++ SLAQPGEP
Sbjct: 466  RLHHFHGYLGAFPSGLEEKAKDYLNGLSKEKRTSLGLSKKGFMKLMKLKYLTSLAQPGEP 525

Query: 1146 VGLLASQSVGEPS 1158
            VG++A+QSVGEPS
Sbjct: 526  VGIIAAQSVGEPS 538


>gi|29165712|gb|AAH49190.1| Polr1a protein [Mus musculus]
          Length = 1366

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 397/1094 (36%), Positives = 571/1094 (52%), Gaps = 165/1094 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHIDL + VYNP LF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CATCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+ +P   ++  +                    +E+
Sbjct: 124  LRVLEVGALQAVYELERILSRFLEETGDPSAFEIQEEL-------------------EEY 164

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
            TS      K+     L  + T   N C++++  +++  F   HM     PH         
Sbjct: 165  TS------KILQNNLLGSQGTHVKNVCESRSKLVAQ--FWKTHMAAKQCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L            ++  T     D       +G    P G  K 
Sbjct: 208  -CKTGRSVVRKEHNSKL----------IITYPATVHKKSDQEGTELPEGVPEAP-GIDKA 255

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L PS  ++ +  +W+NE F L    S +   G       S+FFL  ++VPP +
Sbjct: 256  QMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIY-----------------LANAYVNQPDNAKV 336
            +R  ++ GD +  + QTV L  V++  +                  +    +++ +++ V
Sbjct: 316  YRPVNRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDSSV 375

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             + R                  W+ LQ  VN++FD +      +   GI Q+LEKKEGLF
Sbjct: 376  AIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMDKLMLEKYPGIRQILEKKEGLF 435

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 436  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 495

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 496  NVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLT-------PATGAPKPQGTKVVCRH 548

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 549  VKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 608

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y   
Sbjct: 609  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRG- 667

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L            PAI KP PLWTGKQV++ +L +I       
Sbjct: 668  --------LTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI------- 702

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D+                     +  N   K K G K  V E KP    +
Sbjct: 703  -------IPEDY---------------------APLNLSGKAKIGSKAWVKE-KPRPIPD 733

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
             + +      + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L
Sbjct: 734  FDPD-----SMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCL 788

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT GV+D+L+  + +  R+  +  S + G +    AL L + A  D 
Sbjct: 789  ARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQCGPQAVKAALSLPETASCDE 848

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            I+ K +     +   D  +   DMK   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 849  IQGKWQDAHLSKDQRDFNM--IDMKFKEEVN-HYSNEINKACMPLGLHRQFPENNLQMMV 905

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 906  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 965

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            +RP E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L I YD +VRD+DGS+VQF 
Sbjct: 966  IRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFL 1025

Query: 1034 YGEDGVDVHQTSFI 1047
            YGEDG+D+ +T F+
Sbjct: 1026 YGEDGLDIPKTQFL 1039



 Score =  113 bits (282), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 78/111 (70%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL  PGE VGLLA+QS
Sbjct: 1166 VSETFEKKIDDFSQEWAAQAERSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQS 1225

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+ 
Sbjct: 1226 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF 1276


>gi|26350055|dbj|BAC38667.1| unnamed protein product [Mus musculus]
          Length = 1424

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 397/1094 (36%), Positives = 571/1094 (52%), Gaps = 165/1094 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHIDL + VYNP LF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CATCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+ +P   ++  +                    +E+
Sbjct: 124  LRVLEVGALQAVYELERILSRFLEETGDPSAFEIQEEL-------------------EEY 164

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
            TS      K+     L  + T   N C++++  +++  F   HM     PH         
Sbjct: 165  TS------KILQNNLLGSQGTHVKNVCESRSKLVAQ--FWKTHMAAKQCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L            ++  T     D       +G    P G  K 
Sbjct: 208  -CKTGRSVVRKEHNSKL----------IITYPATVHKKSDQEGTELPEGVPEAP-GIDKA 255

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L PS  ++ +  +W+NE F L    S +   G       S+FFL  ++VPP +
Sbjct: 256  QMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIY-----------------LANAYVNQPDNAKV 336
            +R  ++ GD +  + QTV L  V++  +                  +    +++ +++ V
Sbjct: 316  YRPVNRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDSSV 375

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             + R                  W+ LQ  VN++FD +      +   GI Q+LEKKEGLF
Sbjct: 376  AIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMDKLMLEKYPGIRQILEKKEGLF 435

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 436  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 495

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 496  NVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLT-------PATGAPKPQGTKVVCRH 548

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 549  VKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 608

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y   
Sbjct: 609  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRG- 667

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L            PAI KP PLWTGKQV++ +L +I       
Sbjct: 668  --------LTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI------- 702

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D+                     +  N   K K G K  V E KP    +
Sbjct: 703  -------IPEDY---------------------APLNLSGKAKIGSKAWVKE-KPRPIPD 733

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
             + +      + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L
Sbjct: 734  FDPD-----SMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCL 788

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT GV+D+L+  + +  R+  +  S + G +    AL L + A  D 
Sbjct: 789  ARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQCGPQAVKAALSLPETASCDE 848

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            I+ K +     +   D  +   DMK   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 849  IQGKWQDAHLSKDQRDFNM--IDMKFKEEVN-HYSNEINKACMPLGLHRQFPENNLQMMV 905

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 906  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 965

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            +RP E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L I YD +VRD+DGS+VQF 
Sbjct: 966  IRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFL 1025

Query: 1034 YGEDGVDVHQTSFI 1047
            YGEDG+D+ +T F+
Sbjct: 1026 YGEDGLDIPKTQFL 1039



 Score =  113 bits (283), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 78/111 (70%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL  PGE VGLLA+QS
Sbjct: 1166 VSETFEKKIDDFSQEWAAQAERSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQS 1225

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+ 
Sbjct: 1226 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF 1276


>gi|116283365|gb|AAH10254.1| Polr1a protein [Mus musculus]
          Length = 1366

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 397/1094 (36%), Positives = 572/1094 (52%), Gaps = 165/1094 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHIDL + VYNP LF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CATCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+ +P   ++  +                    +E+
Sbjct: 124  LRVLEVGALQAVYELERILSRFLEETGDPSAFEIQEEL-------------------EEY 164

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
            TS      K+     L  + T   N C++++  +++  F   HM     PH         
Sbjct: 165  TS------KILQNNLLGSQGTHVKNVCESRSKLVAQ--FWKTHMAAKQCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L            ++  T     D       +G    P G  K 
Sbjct: 208  -CKTGRSVVRKEHNSKL----------IITYPATVHKKSDQEGTELPEGVPEAP-GIDKA 255

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L PS  ++ +  +W+NE F L    S +   G       S+FFL  ++VPP +
Sbjct: 256  QMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIY-----------------LANAYVNQPDNAKV 336
            +R  ++ GD +  + QTV L  V++  +                  +    +++ +++ V
Sbjct: 316  YRPVNRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDSSV 375

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             + R                  W+ LQ  VN++FD +      +   GI Q+LEKKEGLF
Sbjct: 376  AIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMDKLMLEKYPGIRQILEKKEGLF 435

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 436  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 495

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 496  NVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLT-------PATGAPKPQGTKVVCRH 548

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 549  VKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 608

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y   
Sbjct: 609  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRG- 667

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L            PAI KP PLWTGKQV++ +L +I       
Sbjct: 668  --------LTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI------- 702

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D+                     +  N   K K G K  V E KP    +
Sbjct: 703  -------IPEDY---------------------APLNLSGKAKIGSKAWVKE-KPRPIPD 733

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
             + +      + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L
Sbjct: 734  FDPD-----SMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCL 788

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT GV+D+L+  + +  R++ +  S + G +    AL L + A  D 
Sbjct: 789  ARLFTAYLQLYRGFTLGVEDILVKPNADVVRQHIIEESTQCGPQAVKAALSLPETASCDE 848

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            I+ K +     +   D  +   DMK   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 849  IQGKWQDAHLSKDQRDFNM--IDMKFKEEVN-HYSNEINKACMPLGLHRQFPENNLQMMV 905

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 906  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 965

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            +RP E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L I YD +VRD+DGS+VQF 
Sbjct: 966  IRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFL 1025

Query: 1034 YGEDGVDVHQTSFI 1047
            YGEDG+D+ +T F+
Sbjct: 1026 YGEDGLDIPKTQFL 1039



 Score =  113 bits (282), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 78/111 (70%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL  PGE VGLLA+QS
Sbjct: 1166 VSETFEKKIDDFSQEWAAQAERSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQS 1225

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+ 
Sbjct: 1226 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF 1276


>gi|74145323|dbj|BAE36122.1| unnamed protein product [Mus musculus]
          Length = 1361

 Score =  627 bits (1617), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 397/1094 (36%), Positives = 571/1094 (52%), Gaps = 165/1094 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHIDL + VYNP LF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CATCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+ +P   ++  +                    +E+
Sbjct: 124  LRVLEVGALQAVYELERILSRFLEETGDPSAFEIQEEL-------------------EEY 164

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
            TS      K+     L  + T   N C++++  +++  F   HM     PH         
Sbjct: 165  TS------KILQNNLLGSQGTHVKNVCESRSKLVAQ--FWKTHMAAKQCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L            ++  T     D       +G    P G  K 
Sbjct: 208  -CKTGRSVVRKEHNSKL----------IITYPATVHKKSDQEGTELPEGVPEAP-GIDKA 255

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L PS  ++ +  +W+NE F L    S +   G       S+FFL  ++VPP +
Sbjct: 256  QMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIY-----------------LANAYVNQPDNAKV 336
            +R  ++ GD +  + QTV L  V++  +                  +    +++ +++ V
Sbjct: 316  YRPVNRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDSSV 375

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             + R                  W+ LQ  VN++FD +      +   GI Q+LEKKEGLF
Sbjct: 376  AIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMDKLMLEKYPGIRQILEKKEGLF 435

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 436  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 495

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 496  NVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLT-------PATGAPKPQGTKVVCRH 548

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 549  VKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 608

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y   
Sbjct: 609  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRG- 667

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L            PAI KP PLWTGKQV++ +L +I       
Sbjct: 668  --------LTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI------- 702

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D+                     +  N   K K G K  V E KP    +
Sbjct: 703  -------IPEDY---------------------APLNLSGKAKIGSKAWVKE-KPRPIPD 733

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
             + +      + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L
Sbjct: 734  FDPD-----SMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCL 788

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT GV+D+L+  + +  R+  +  S + G +    AL L + A  D 
Sbjct: 789  ARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQCGPQAVKAALSLPETASCDE 848

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            I+ K +     +   D  +   DMK   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 849  IQGKWQDAHLSKDQRDFNM--IDMKFKEEVN-HYSNEINKACMPLGLHRQFPENNLQMMV 905

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 906  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 965

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            +RP E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L I YD +VRD+DGS+VQF 
Sbjct: 966  IRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFL 1025

Query: 1034 YGEDGVDVHQTSFI 1047
            YGEDG+D+ +T F+
Sbjct: 1026 YGEDGLDIPKTQFL 1039



 Score =  113 bits (282), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 78/111 (70%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL  PGE VGLLA+QS
Sbjct: 1166 VSETFEKKIDDFSQEWAAQAERSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQS 1225

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+ 
Sbjct: 1226 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF 1276


>gi|74184497|dbj|BAE27874.1| unnamed protein product [Mus musculus]
          Length = 1717

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 396/1094 (36%), Positives = 570/1094 (52%), Gaps = 165/1094 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHIDL + VYNP LF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CATCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+ +P   ++  +                    +E+
Sbjct: 124  LRVLEVGALQAVYELERILSRFLEETGDPSAFEIQEEL-------------------EEY 164

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
            TS      K+     L  + T   N C++++  +++  F   HM     PH         
Sbjct: 165  TS------KILQNNLLGSQGTHVKNVCESRSKLVAQ--FWKTHMAAKQCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L            ++  T     D       +G    P G  K 
Sbjct: 208  -CKTGRSVVRKEHNSKL----------IITYPATVHKKSDQEGTELPEGVPEAP-GIDKA 255

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L PS  ++ +  +W+NE F L    S +   G       S+FFL  ++VPP +
Sbjct: 256  QMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIY-----------------LANAYVNQPDNAKV 336
            +R  ++ GD +  + QTV L  V++  +                  +    +++ +++ V
Sbjct: 316  YRPVNRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDSSV 375

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             + R                  W+ LQ  VN++FD +      +   GI Q+LEKKEGLF
Sbjct: 376  AIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMDKLMLEKYPGIRQILEKKEGLF 435

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 436  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 495

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 496  NVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLT-------PATGAPKPQGTKVVCRH 548

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 549  VKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 608

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y   
Sbjct: 609  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANITIRGCFFTREQYMELVYRG- 667

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L            PAI KP PLWTGKQV++ +L +I       
Sbjct: 668  --------LTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI------- 702

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D+                     +  N   K K G K  V E KP    +
Sbjct: 703  -------IPEDY---------------------APLNLSGKAKIGSKAWVKE-KPRPIPD 733

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
             + +      + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L
Sbjct: 734  FDPDS-----MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCL 788

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT GV+D+L+  + +  R+  +  S + G +    AL L + A  D 
Sbjct: 789  ARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQCGPQAVKAALSLPETASCDE 848

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            I+ K +     +   D  +   DMK   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 849  IQGKWQDAHLSKDQRDFNM--IDMKFKEEVN-HYSNEINKACMPLGLHRQFPENNLQMMV 905

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 906  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 965

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            +RP E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L I YD +VRD+D S+VQF 
Sbjct: 966  IRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDDSVVQFL 1025

Query: 1034 YGEDGVDVHQTSFI 1047
            YGEDG+D+ +T F+
Sbjct: 1026 YGEDGLDIPKTQFL 1039



 Score =  113 bits (283), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 78/111 (70%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL  PGE VGLLA+QS
Sbjct: 1166 VSETFEKKIDDFSQEWAAQAERSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQS 1225

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+ 
Sbjct: 1226 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF 1276


>gi|350414724|ref|XP_003490399.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Bombus
            impatiens]
          Length = 1713

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 411/1102 (37%), Positives = 583/1102 (52%), Gaps = 191/1102 (17%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG   F CPGHFGHI+L +PV NPL    L  L+K  C  C   +           K
Sbjct: 71   CGTCGCNVFKCPGHFGHIELPMPVVNPLFHRRLSMLIKLACLNCFSLQIPSYVKLLLTAK 130

Query: 61   LELIIKGDIIAAKSLDLDL---PSESSNPEDSDVS-------NKSSCSMVTPRGN----- 105
            L L+ KG +   +SL+ ++    S S NP + DV        N +   +  P+ N     
Sbjct: 131  LNLLQKGYLSELESLEQEIMFVVSCSGNPYEVDVQAVQNVIDNYTENLLNRPKLNQSIVQ 190

Query: 106  YD----NVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMN 161
            YD    N +N+  Q W +  + E  +     LKI    C NC+   P+I+          
Sbjct: 191  YDEIQLNTKNINMQ-WHA--YVENVIKQYASLKI----CVNCQEPIPKITT--------- 234

Query: 162  GMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQ 221
                     N I    + ET                            P T  T   R  
Sbjct: 235  -------LKNKIMTTKMPET----------------------------PNTPRTVKSR-- 257

Query: 222  KGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFEL------CSFISDMQQQGFGK 275
               G +         L S  ++P   KD + KLW+NE +       C  + D++      
Sbjct: 258  ---GVI-------HKLESVMIMPDQSKDYLRKLWQNERDFLKVLIPCFGMVDIEYPT--- 304

Query: 276  KAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY-------V 328
                 IFF  V+ V P   R  +     ++EHPQ+ +   ++Q  + L N          
Sbjct: 305  ----DIFFFEVIPVLPPIVRPVNFVNGQMIEHPQSQVYKSIIQDCLVLRNIIQTIQDGDT 360

Query: 329  NQ-PDNAKVIVAR-------------WMNLQQSVNVLFD-GKNAAGQRDMASGICQLLEK 373
            NQ  +  K++  +             W NLQ +V+ L D   N         G+ Q++EK
Sbjct: 361  NQLTEEGKLVFEQIKGNTAVEKLHNAWQNLQINVDHLMDRDMNRTADSANCQGLKQVIEK 420

Query: 374  KEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDS 433
            KEG+ R  +MGKRVN+A RSVI+PDP L ++EIGIP  FA++LTYP  VTPWNVV+LR  
Sbjct: 421  KEGIIRMHMMGKRVNFAARSVITPDPNLNIDEIGIPEAFAMKLTYPTPVTPWNVVQLRQL 480

Query: 434  IINGAEIHPGATHYLDKLSTMRLPPNKK--MRISIGRKLDTSRGAIVQPGKDSDNEFEG- 490
            ++NG  IHPGA     +  +++   N     R +I ++L T+          ++  F+G 
Sbjct: 481  VLNGPNIHPGAVMVEHEDGSIQRISNTNAVQREAIAKRLLTT-------SDKANKFFKGI 533

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
            K+++RHLQ+GD++L+NRQPTLHKPSIMAH  R+LKGEKTLR+HYANC  YN+DFDGDEMN
Sbjct: 534  KIIHRHLQNGDILLLNRQPTLHKPSIMAHKARILKGEKTLRLHYANCKAYNSDFDGDEMN 593

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
             H+PQ+E++R+E YNI N +NQY+ P +G PL  LIQDH+VS   LT + TF  R+++ Q
Sbjct: 594  AHYPQNELARSEGYNIANVSNQYLVPKDGTPLSGLIQDHMVSGVRLTVRGTFFPREDYMQ 653

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            L+Y++                   +S  +  ++ L P+I KP PLW+GKQ+++ V+ +I 
Sbjct: 654  LVYAA-------------------LSTIQDNIILLPPSIIKPVPLWSGKQIVSTVIINI- 693

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                         +P +  +    A+ +   K+       +  K  + K G   E ++  
Sbjct: 694  -------------IPPNQARINLTANAKISVKE------WQVEKARQWKCG--TEFLD-- 730

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAG 788
                          K +SE +++I   +L+ GV+DK  +    +GLVH + ELYG   + 
Sbjct: 731  -------------PKTMSEAEVIIRNGELLCGVLDKTHYGATPFGLVHCIFELYGGICST 777

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
             LLSA  +LF   LQ +GFT G++D+L+L   +++RK  +    +IG+ +    LEL D 
Sbjct: 778  KLLSAFGKLFQAALQRNGFTLGIEDILLLNKADKKRKEIISNCRKIGENIQRSVLELPDD 837

Query: 849  AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL-LSEGLLKPTGKN 907
              +D +   S+IE++         A  D K  S L+ +T+   IN++ L  GLLK    N
Sbjct: 838  IPMDIV--TSKIEESYWSDPKFR-AQIDRKYKSALDVYTND--INKVCLPAGLLKKFPDN 892

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
             + LM  SGAKGS VN  QIS  LGQ ELEGKR P M+SGK+LPSF  +D  PRAGGFI 
Sbjct: 893  NLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPSFPAYDPTPRAGGFID 952

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
             RF+TG++PQE++FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE L I+YD +VRD+DG
Sbjct: 953  GRFMTGIKPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSINYDSTVRDSDG 1012

Query: 1028 SIVQFCYGEDGVDVHQTSFISK 1049
            S+VQ  YGEDG+D+  + F+ K
Sbjct: 1013 SMVQIYYGEDGLDIPGSQFLRK 1034



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 61/131 (46%), Positives = 85/131 (64%), Gaps = 7/131 (5%)

Query: 1080 NQEMIYKKCSGQLDASNAYIMELPD--ALKDNAEKFADKFLSNE-----MAKQDFLKLVK 1132
            +++ IY +C+   D   +   +  D     +  E   D+++ ++     + K+D   L+ 
Sbjct: 1133 DKKWIYAECTRCPDPIMSKYRQDIDFGVFSERLENLMDEYIGSKSNNLIIKKKDLRDLLS 1192

Query: 1133 HKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASK 1192
             K +  +  PGEPVGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +ASK
Sbjct: 1193 VKVMKIVCPPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMASK 1252

Query: 1193 DIKTPVITCPL 1203
            +IKTP +  P 
Sbjct: 1253 NIKTPSMEIPF 1263


>gi|340715117|ref|XP_003396066.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Bombus terrestris]
          Length = 1713

 Score =  624 bits (1609), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 410/1102 (37%), Positives = 582/1102 (52%), Gaps = 191/1102 (17%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG   F CPGHFGHI+L +PV NPL    L+ L+K  C  C   +           K
Sbjct: 71   CGTCGCNVFKCPGHFGHIELPMPVVNPLFHRGLFMLIKLACLNCFSLQIPPYIKLLLTAK 130

Query: 61   LELIIKGDIIAAKSLDLDL---PSESSNPEDSDVS-------NKSSCSMVTPRGN----- 105
            L L+ +G +   + L+ ++    S S NP + DV        N +   +  PR N     
Sbjct: 131  LNLLQQGYLSELEDLEQEIMFVVSCSGNPYEVDVQAVQNVIDNYTENLLNRPRLNQRIMQ 190

Query: 106  YD----NVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMN 161
            YD    N +N+  Q  T ++    + A L+        C NC+   P+I+          
Sbjct: 191  YDEIQLNTKNINMQWHTYVENVIKQYATLKV-------CVNCQEPIPKITT--------- 234

Query: 162  GMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQ 221
                     N I    + ET                            P T  T   R  
Sbjct: 235  -------XKNKIMTTKICET----------------------------PNTPRTVKSR-- 257

Query: 222  KGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFEL------CSFISDMQQQGFGK 275
               G V         L +  ++P   KD + KLW+NE +       C  + D++      
Sbjct: 258  ---GVV-------HKLETVIIMPDQSKDYLRKLWQNERDFLKVLIPCFGMVDIEYPT--- 304

Query: 276  KAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY-------V 328
                 IFF  V+ V P   R  +     ++EHPQ+ +   ++Q  + L N          
Sbjct: 305  ----DIFFFEVIPVLPPIVRPVNFVNGQMIEHPQSQVYKSIIQDCLVLRNIIQTIQDGDT 360

Query: 329  NQ-PDNAKVIVAR-------------WMNLQQSVNVLFD-GKNAAGQRDMASGICQLLEK 373
            NQ  +  K++  +             W NLQ +V+ L D   N         G+ Q++EK
Sbjct: 361  NQLTEEGKLVFEQIKGNTAIEKLHNAWQNLQINVDHLMDRDMNRTADSANCQGLKQVIEK 420

Query: 374  KEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDS 433
            KEG+ R  +MGKRVN+A RSVI+PDP L ++EIGIP  FA++LTYP  VTPWNVV+LR  
Sbjct: 421  KEGIIRMHMMGKRVNFAARSVITPDPNLNIDEIGIPEAFAMKLTYPTPVTPWNVVQLRQL 480

Query: 434  IINGAEIHPGATHYLDKLSTMRLPPNKK--MRISIGRKLDTSRGAIVQPGKDSDNEFEG- 490
            ++NG  IHPGA     +  +++   N     R +I ++L T+          ++  F+G 
Sbjct: 481  VLNGPNIHPGAVMVEHEDGSIQRISNTNAVQREAIAKRLLTT-------SDKANKFFKGI 533

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
            K+++RHLQ+GD++L+NRQPTLHKPSIMAH  R+LKGEKTLR+HYANC  YN+DFDGDEMN
Sbjct: 534  KIIHRHLQNGDILLLNRQPTLHKPSIMAHKARILKGEKTLRLHYANCKAYNSDFDGDEMN 593

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
             H+PQ+E++R+E YNI N +NQY+ P +G PL  LIQDH+VS   LT + TF +R+++ Q
Sbjct: 594  AHYPQNELARSEGYNIANVSNQYLVPKDGTPLSGLIQDHMVSGVRLTVRGTFFSREDYMQ 653

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            L+Y++                   +S  +  ++ L P+I KP PLW+GKQ+++ V+ +I 
Sbjct: 654  LVYAA-------------------LSTIQDNIILLPPSIIKPVPLWSGKQIVSTVIINII 694

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
               PP                                  ++ N     K   K+  VE K
Sbjct: 695  ---PP--------------------------------NQARINLTANAKINVKEWQVE-K 718

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAG 788
            P + K   +  +  K +SE +++I   +L+ GV+DK  +    +GL+H + ELYG   + 
Sbjct: 719  PRQWKCGTEFLNP-KTMSEAEVIIRNGELLCGVLDKTHYGATPFGLIHCIFELYGGICST 777

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
             LLSA  +LF   LQ +GFT G++D+L+L   +++RK  +    +IG+ +    LEL D 
Sbjct: 778  KLLSAFGKLFQAALQRNGFTLGIEDILLLNKADKKRKEIISNCRKIGENIQRSVLELPDD 837

Query: 849  AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL-LSEGLLKPTGKN 907
              +D +   S+IE++         A  D K  S L+ +T+   IN++ L  GLLK    N
Sbjct: 838  IPMDIV--TSKIEESYWSDPKFR-AQIDRKYKSALDVYTND--INKVCLPAGLLKKFPDN 892

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
             + LM  SGAKGS VN  QIS  LGQ ELEGKR P M+SGK+LPSF  +D  PRAGGFI 
Sbjct: 893  NLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPSFPAYDPTPRAGGFID 952

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
             RF+TG++PQE++FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE L I+YD +VRD+DG
Sbjct: 953  GRFMTGIKPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSINYDSTVRDSDG 1012

Query: 1028 SIVQFCYGEDGVDVHQTSFISK 1049
            S+VQ  YGEDG+D+  + F+ K
Sbjct: 1013 SMVQIYYGEDGLDIPGSQFLRK 1034



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 86/131 (65%), Gaps = 7/131 (5%)

Query: 1080 NQEMIYKKCSGQLDASNAYIMELPD--ALKDNAEKFADKFLSNE-----MAKQDFLKLVK 1132
            +++ IY +C+   D   +   +  D     +  E   D++++N+     + K+D   L+ 
Sbjct: 1133 DKKWIYAECARCPDPIMSKYRQDIDFGVFSERLENLMDEYIANKSNNSIIKKKDLRDLLS 1192

Query: 1133 HKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASK 1192
             K +  +  PGEPVGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +ASK
Sbjct: 1193 VKVMKIVCPPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMASK 1252

Query: 1193 DIKTPVITCPL 1203
            +IKTP +  P 
Sbjct: 1253 NIKTPSMEIPF 1263


>gi|426336242|ref|XP_004029609.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Gorilla
            gorilla gorilla]
          Length = 1720

 Score =  624 bits (1608), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 404/1103 (36%), Positives = 575/1103 (52%), Gaps = 172/1103 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P  S++  +                     E 
Sbjct: 124  LRVLEVGALQAVYELERILNRFLEENADPSASEIREE--------------------LEQ 163

Query: 118  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNG--MPHADIRANLIRG 175
             + +  +  L   Q   ++      C++K+  I+   F   HMN    PH          
Sbjct: 164  YTTEIVQNNLLGSQGAHVKNV----CESKSKLIA--LFWKAHMNAKRCPH---------- 207

Query: 176  CNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQK 235
            C  G +    E    L                TFP      A   QK S   P G ++ +
Sbjct: 208  CKTGRSVVRKEHNSKLTI--------------TFPAMVHRTA--GQKDSE--PLGIEEAQ 249

Query: 236  DLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKF 294
                G L P+  ++ +  LW+NE F L    S M   G   +   S+FFL  ++VPP ++
Sbjct: 250  IGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRY 309

Query: 295  RLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKVI 337
            R  S+ GD +  + QTV L  V++  + +                 A    ++  ++ + 
Sbjct: 310  RPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVATPTTDEEKDSLIA 369

Query: 338  VAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFR 379
            + R                  W+ LQ  VN++FD +      D   GI Q+LEKKEGLFR
Sbjct: 370  IDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFR 429

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
            + +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING  
Sbjct: 430  KHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPN 489

Query: 440  IHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
            +HPGA+  +  D   T     N   R ++ ++L T       P   +      K+V RH+
Sbjct: 490  VHPGASMVINEDGSRTALSAVNMTQREAVAKQLLT-------PATGAPKPQGTKIVCRHV 542

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            ++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ E
Sbjct: 543  KNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSE 602

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
            + RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y    
Sbjct: 603  LGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREQYMELVYR--- 659

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
                    T K G+  L+S          P+I KP PLWTGKQV++ +L +I        
Sbjct: 660  ------GLTDKVGRVKLLS----------PSILKPFPLWTGKQVVSTLLINI-------- 695

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEA 737
                  +P+D                N  GK   T K         KE     PG   ++
Sbjct: 696  ------IPEDHIPL------------NLSGKAKITGK------AWVKETPRSVPGFNPDS 731

Query: 738  EKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALS 795
                     + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L+
Sbjct: 732  ---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLA 782

Query: 796  RLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
            RLFT +LQ++ GFT GV+D+L+    + +R+  +  S   G +    AL L + A  D +
Sbjct: 783  RLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEV 842

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
            + K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M  
Sbjct: 843  RGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQMMVQ 899

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG+
Sbjct: 900  SGAKGSTVNAMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGI 959

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
            +P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF Y
Sbjct: 960  KPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLY 1019

Query: 1035 GEDGVDVHQTSFIS--KFDALAA 1055
            GEDG+D+ +T F+   +F  LA+
Sbjct: 1020 GEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 81/114 (71%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL +PGE VGLLA+QS
Sbjct: 1159 VSETFETKVDDYSQEWAAQTEKSYEKSELSVDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 1218

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L  K
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTK 1272


>gi|74144282|dbj|BAE36009.1| unnamed protein product [Mus musculus]
          Length = 1424

 Score =  623 bits (1607), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 395/1094 (36%), Positives = 570/1094 (52%), Gaps = 165/1094 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHIDL + VYNP LF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CATCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+ +P   ++  +                    +E+
Sbjct: 124  LRVLEVGALQAVYELERILSRFLEETGDPSAFEIQEEL-------------------EEY 164

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
            TS      K+     L  + T   N C++++  +++  F   HM     PH         
Sbjct: 165  TS------KILQNNLLGSQGTHVKNVCESRSKLVAQ--FWKTHMAAKQCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L            ++  T     D       +G    P G  K 
Sbjct: 208  -CKTGRSVVRKEHNSKL----------IITYPATVHKKSDQEGTELPEGVPEAP-GIDKA 255

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L PS  ++ +  +W+NE F L    S +   G       S+FFL  ++VPP +
Sbjct: 256  QMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIY-----------------LANAYVNQPDNAKV 336
            +R  ++ GD +  + QTV L  V++  +                  +    +++ +++ V
Sbjct: 316  YRPVNRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDSSV 375

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             + R                  W+ LQ  VN++FD +      +   GI Q+LEKKEGLF
Sbjct: 376  AIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMDKLMLEKYPGIRQILEKKEGLF 435

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 436  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 495

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 496  NVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLT-------PATGAPKPQGTKVVCRH 548

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 549  VKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 608

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y   
Sbjct: 609  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYR-- 666

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L            PAI KP PLWTGKQV++ +L +I       
Sbjct: 667  -------GLTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI------- 702

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D+                     +  N   + K G K  V E KP    +
Sbjct: 703  -------IPEDY---------------------APLNLSGEAKIGSKAWVKE-KPRPIPD 733

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
             + +      + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L
Sbjct: 734  FDPD-----SMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCL 788

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT GV+D+L+  + +  R+  +  S + G +    AL L + A  D 
Sbjct: 789  ARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQCGPQAVKAALSLPETASCDE 848

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            I+ K +     +   D  +   D K   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 849  IQGKWQDAHLSKDQRDFNM--IDKKFKEEVN-HYSNEINKACMPLGLHRQFPENNLQMMV 905

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 906  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 965

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            +RP E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L I YD +VRD+DGS+VQF 
Sbjct: 966  IRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFL 1025

Query: 1034 YGEDGVDVHQTSFI 1047
            YGEDG+D+ +T F+
Sbjct: 1026 YGEDGLDIPKTQFL 1039



 Score =  113 bits (283), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 78/111 (70%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL  PGE VGLLA+QS
Sbjct: 1166 VSETFEKKIDDFSQEWAAQAERSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQS 1225

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+ 
Sbjct: 1226 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF 1276


>gi|167382961|ref|XP_001736348.1| DNA-directed RNA polymerase I subunit RPA1 [Entamoeba dispar SAW760]
 gi|165901328|gb|EDR27412.1| DNA-directed RNA polymerase I subunit RPA1, putative [Entamoeba
            dispar SAW760]
          Length = 1568

 Score =  623 bits (1606), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 384/985 (38%), Positives = 574/985 (58%), Gaps = 102/985 (10%)

Query: 244  PSDVKDIIEKLWEN---EFELCSFISDMQQQGFGKK-----AGHSIFFLGVVLVPPIKFR 295
            PS + +I+++ WE+   + E+ S +   Q +G G+K       + IFF+ V+ +PP +FR
Sbjct: 270  PSYIMNILKEAWEHNDIQNEVLSRMYYSQMRG-GEKLDIIIPSYHIFFVEVLPIPPSRFR 328

Query: 296  LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA-RWM--NLQQSVNVLF 352
              +K G+ + +HPQ++    ++++    +N    + +  ++  + R++   +Q++ N+L 
Sbjct: 329  QLNKFGELISDHPQSIYYRTIIES----SNTLKVRREGTRIDYSERFLIDQMQKAYNLLI 384

Query: 353  DGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYF 412
               NA     M S    +LE K+GLFR  +MGKRVNYA R+VISPDP+L  N IG+P  F
Sbjct: 385  LTGNAEEGISMKS----ILEHKKGLFRNNMMGKRVNYAARTVISPDPFLPTNTIGMPLPF 440

Query: 413  ALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLS-TMRLPPNKKMRISIGRKLD 471
            A+RLT    V   N  +++ ++ING ++ PGA +  ++    + L  +        R+ +
Sbjct: 441  AMRLTIAVPVNERNYEEMKQAVINGPQVWPGALYIENEWGHKIVLLDDSNPYNKTKRQGE 500

Query: 472  TSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLR 531
              R  ++ P   +   F  K V+RH+ D D+VL NRQPTLHKP IM H V+VLK EKT+R
Sbjct: 501  AERLLVIDP--KAPRSF--KTVFRHVIDNDMVLSNRQPTLHKPGIMGHYVKVLKIEKTIR 556

Query: 532  MHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIV 591
            MHYANC+T+NADFDGDEMN+H PQ   +R+E  NI  ++ QYV P NG PLR LIQDH++
Sbjct: 557  MHYANCNTFNADFDGDEMNLHLPQSMEARSEVMNIALSDEQYVVPKNGQPLRGLIQDHVI 616

Query: 592  SAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL-LPAIW 650
            S+ +LTK+DTF N++E+CQ++Y++                  L    EQ  + +  PAI 
Sbjct: 617  SSFMLTKRDTFFNKEEYCQIIYTA------------------LYGIYEQYSIRIPKPAIL 658

Query: 651  KPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLS 710
            KP P WTGKQVIT +L HI+        E                          K K+S
Sbjct: 659  KPIPKWTGKQVITGILMHISTNHCTINFE-------------------------GKCKIS 693

Query: 711  KTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF- 769
             TN++++     KKE+   K  +E   + N +     ++   +I ++ ++ G +DK Q  
Sbjct: 694  -TNEINRGGYQTKKEIEMMKQKDEFTEKWNGA-----NDSLCIIKESQMLTGTLDKNQIG 747

Query: 770  -ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHL 828
              +  L+H + ELY    AG  L+ LSRL T +LQ  G TC +DD ++  + + +R   L
Sbjct: 748  ATNQSLIHAIYELYNGKVAGMCLTLLSRLLTTYLQRIGHTCSLDDCMLKPEFDNKRTEML 807

Query: 829  HGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTS 888
            + + E+ +    +  +LE  ++ D   +   +  A R          D  + +++N+ TS
Sbjct: 808  NKTNELARIATAKHFKLEGHSKYD---IDLALANARRR--PQLSKELDDSVKNEVNECTS 862

Query: 889  SSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGK 948
            + VI E +  G L+    N ++LMTT+GAKGSKVN  QI+  LGQQELEG+RVP M +GK
Sbjct: 863  N-VIKECIPYGQLRAFPWNSLALMTTTGAKGSKVNHSQITCLLGQQELEGRRVPVMATGK 921

Query: 949  TLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1008
            TLPSF  +D + RAGGFI  RFLTG+ PQE++FHCMAGREGL+DTAVKT+ SGYLQRC+I
Sbjct: 922  TLPSFPRYDTSARAGGFIASRFLTGVPPQEFFFHCMAGREGLIDTAVKTASSGYLQRCVI 981

Query: 1009 KNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFI-------SKFDALAARERGRG 1061
            K LE L + YDYSVR++DGSI++F YG+DG+DV ++ F+       + +DAL ++   + 
Sbjct: 982  KMLESLHVEYDYSVRESDGSIIEFMYGDDGIDVMKSGFLNNIDFWANNYDALVSKYETKT 1041

Query: 1062 ------RGRNKFCDKGSHTFVMGRNQE---MIYKKCSGQLDASNAYIMELPDALKDNAEK 1112
                  +G ++ C             E    IY   +     S  Y   + D +K++   
Sbjct: 1042 ILSKFKKGFSRACKLQKKCLRHPEQYEPVQSIYSPSNNLAAVSEKYYKLINDYIKEDKR- 1100

Query: 1113 FADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRG 1172
               +F S ++  + F  ++  K+  SL  PGEPVG+LA QS+GEPSTQMTLNTFHLAGRG
Sbjct: 1101 --GEFKSGKLDPETFKVMMMLKYNKSLINPGEPVGVLAGQSIGEPSTQMTLNTFHLAGRG 1158

Query: 1173 EMNVTLGIPRLQEILTIASKDIKTP 1197
            ++NVTLG+PR++E++  A K+I TP
Sbjct: 1159 DVNVTLGMPRIKELVMFAKKEIATP 1183



 Score = 59.7 bits (143), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (57%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG  +  CPGHFGH +L  P+Y PLL   L  LL+ IC  CH  KAS++ +     +
Sbjct: 69  CPTCGLTEEGCPGHFGHFELEEPLYQPLLLPELVKLLRSICMKCHSLKASKQVILGAAIE 128

Query: 61  LELIIKGDIIAAKSL 75
           LE + K DI  A  +
Sbjct: 129 LERLSKNDIEGAMDI 143


>gi|219518786|gb|AAI43346.1| Polymerase (RNA) I polypeptide A, 194kDa [Homo sapiens]
          Length = 1720

 Score =  622 bits (1605), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 403/1103 (36%), Positives = 575/1103 (52%), Gaps = 172/1103 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P  S++  +                     E 
Sbjct: 124  LRVLEVGALQAVYELERILNRFLEENADPSASEIREE--------------------LEQ 163

Query: 118  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNG--MPHADIRANLIRG 175
             + +  +  L   Q   ++      C++K+  I+   F   HMN    PH          
Sbjct: 164  YTTEIVQNNLLGSQGAHVKNV----CESKSKLIA--LFWKAHMNAKRCPH---------- 207

Query: 176  CNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQK 235
            C  G +    E    L                TFP      A   QK S   P G ++ +
Sbjct: 208  CKTGRSVVRKEHNSKLTI--------------TFPAMVHRTA--GQKDSE--PLGIEEAQ 249

Query: 236  DLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKF 294
                G L P+  ++ +  LW+NE F L    S M   G   +   S+FFL  ++VPP ++
Sbjct: 250  IGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRY 309

Query: 295  RLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKVI 337
            R  S+ GD +  + QTV L  V++  + +                 A    ++ +++ + 
Sbjct: 310  RPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVATPTTDEEEDSLIA 369

Query: 338  VAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFR 379
            + R                  W+ LQ  VN++FD +      D   GI Q+LEKKEGLFR
Sbjct: 370  IDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFR 429

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
            + +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING  
Sbjct: 430  KHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPN 489

Query: 440  IHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
            +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH+
Sbjct: 490  VHPGASMVINEDGSRTALSAVDMTQREAVAKQLLT-------PATGAPKPQGTKIVCRHV 542

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            ++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ E
Sbjct: 543  KNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSE 602

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
            + RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+ + +L+Y    
Sbjct: 603  LGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYR--- 659

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
                    T K G+  L+S          P+I KP PLWTGKQV++ +L +I        
Sbjct: 660  ------GLTDKVGRVKLLS----------PSILKPFPLWTGKQVVSTLLINI-------- 695

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEA 737
                  +P+D                N  GK   T K         KE     PG   ++
Sbjct: 696  ------IPEDHIPL------------NLSGKAKITGK------AWVKETPRSVPGFNPDS 731

Query: 738  EKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALS 795
                     + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L+
Sbjct: 732  ---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLA 782

Query: 796  RLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
            RLFT +LQ++ GFT GV+D+L+    + +R+  +  S   G +    AL L + A  D +
Sbjct: 783  RLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEV 842

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
            + K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M  
Sbjct: 843  RGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQMMVQ 899

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG+
Sbjct: 900  SGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGI 959

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
            +P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF Y
Sbjct: 960  KPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLY 1019

Query: 1035 GEDGVDVHQTSFIS--KFDALAA 1055
            GEDG+D+ +T F+   +F  LA+
Sbjct: 1020 GEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 81/114 (71%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL +PGE VGLLA+QS
Sbjct: 1159 VSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 1218

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L  K
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTK 1272


>gi|312372078|gb|EFR20121.1| hypothetical protein AND_20631 [Anopheles darlingi]
          Length = 1721

 Score =  622 bits (1605), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 406/1031 (39%), Positives = 568/1031 (55%), Gaps = 180/1031 (17%)

Query: 281  IFFLGVVLVPPIKFRLPSKGGD--SVMEHPQTVLLSKVLQANIYL--------ANAYVNQ 330
            IFF+ VV V P K R P +  +  +V+EH Q+ +L+ +L AN  +        A A  NQ
Sbjct: 286  IFFMDVVPVSPPKMR-PVRRTERGTVVEHSQSAILNHILLANSTVRAILMWNEAQAKRNQ 344

Query: 331  -------PDNAKVIVA-RWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKL 382
                    D A++  A R +   Q ++     +NA        G+ Q++EKK G+ R  +
Sbjct: 345  EGTEEDQSDEAQLSTAKRVIGHDQLLDA--QTRNAKNAAVAPPGLKQVIEKKMGIIRMHM 402

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
            MGKRVNYA R+VI+PDP + V EIGIP  FA +LTYP  VTPWNV +LR  ++NG +++P
Sbjct: 403  MGKRVNYAARTVITPDPNIGVEEIGIPKLFAKKLTYPVPVTPWNVAELRQWVLNGPDVYP 462

Query: 443  GATHYLD------KLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
            GA    D      K+S+     N   R S+ + L T       P  D   +   K+V+RH
Sbjct: 463  GANLIEDSNGRVSKISSF----NVTQRQSMAKTLLT-------PSTDGSADDSIKIVHRH 511

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            LQ+GD++L+NRQPTLH+PSIMAH  ++L GEK  R+HY+NC +YNADFDGDEMN H PQ+
Sbjct: 512  LQNGDILLLNRQPTLHRPSIMAHRAKILPGEKIFRLHYSNCKSYNADFDGDEMNAHLPQN 571

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            EV+R+EAY +V   +QY+ P +G PL  LIQDHIVSA  L  +  F NR+++ QL++ + 
Sbjct: 572  EVARSEAYELVAVPHQYLVPKDGTPLGGLIQDHIVSAVKLFIRGKFFNREDYQQLVFQAL 631

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
             +  G                 + E+LP  P+I KP  LW+GKQ+I+ ++ ++T    P 
Sbjct: 632  SNQKG-----------------DIELLP--PSILKPVRLWSGKQIISTIVKNLTPKGLPH 672

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
            +                          N  GK SK N+ H         V+  +P +   
Sbjct: 673  I--------------------------NMIGK-SKLNEKH-------WRVLPSRPWQHGG 698

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSAL 794
                 S   ELSE ++ I + +L+ G++DK  F    YGL+H + ELYG   +  LLS+L
Sbjct: 699  TPLEGS---ELSESEVCIRQGELLCGILDKNHFGATPYGLIHCMYELYGGVCSSALLSSL 755

Query: 795  SRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
            SRLFT +LQ  GFT GV D+L+     R+R   +     +   V   A  LE  A+  P 
Sbjct: 756  SRLFTYYLQWEGFTLGVHDILVQAKANRKRSKIIAECRAVAG-VEATAAALELPADTPPE 814

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
            +L   + +A         +  D K  S L+K+T + + N  L +GL+     N + LM  
Sbjct: 815  ELAKRLTEAY-AKNPKFRSILDRKYKSVLDKYT-NQINNVCLPQGLISKFPANNLQLMVQ 872

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS VN  QIS  LGQ ELEGKR P M+SG++LPSF  ++ +P++GGFI  RF+TG+
Sbjct: 873  SGAKGSTVNTMQISCLLGQIELEGKRPPLMMSGRSLPSFAYYETSPKSGGFIDGRFMTGI 932

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
            +PQ+++FHCMAGREGL+DTAVKTSRSGYLQRCL+K+LE L + YD +VRD+DGS+VQF Y
Sbjct: 933  QPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLSVQYDMTVRDSDGSVVQFMY 992

Query: 1035 GEDGVDVHQTSFISKFDALA---------ARERGRGRGRNKFCDKGSHTFVMGRNQEMI- 1084
            GEDG+D+ +  F+     L+          R+  + R  N   +   H  +    + M  
Sbjct: 993  GEDGLDIAKAQFVGNGKQLSFLDLNRDVIVRKELQERLANAEYEDPLHAALKKHMKRMKR 1052

Query: 1085 YKKCSGQLDA------SNAYI-------------MELPDALKDNA------EKFADKFLS 1119
            +KK +G  +A      ++A++             M  PD LK ++      EK A +++ 
Sbjct: 1053 WKKVNGGTEAMTQKRRTSAFVAFSAAKTDELRKEMAKPDKLKSSSGRTKLTEKLAKRWVK 1112

Query: 1120 NEMA-KQDFLKLVKH--------------------------------------------- 1133
             + A K++F+K  +H                                             
Sbjct: 1113 CDPAIKREFVKQTEHCPDPLPAVYRPDAHFGVLSERLEELVHSYKRTERPLHDIDELMQI 1172

Query: 1134 KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKD 1193
            K   SL  PGEPVG+LA+QSVGEPSTQMTLNTFH AGRG+MNVTLGIPRL+EIL +AS +
Sbjct: 1173 KGSFSLVAPGEPVGILAAQSVGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMLASSN 1232

Query: 1194 IKTPVITCPLL 1204
            IKTP +  P L
Sbjct: 1233 IKTPSMEIPFL 1243



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 37/77 (48%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC + +  C GHFGHI++ + VYNP     LY LL+  C  C               +
Sbjct: 60  CFTCARDELHCEGHFGHIEIDLSVYNPFFVRTLYNLLRISCMSCTRLLIHDNVKALLELQ 119

Query: 61  LELIIKGDIIAAKSLDL 77
           L L   G I+ A+ LD+
Sbjct: 120 LRLSDAGYIVEAEELDV 136


>gi|294868586|ref|XP_002765594.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
            marinus ATCC 50983]
 gi|239865673|gb|EEQ98311.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
            marinus ATCC 50983]
          Length = 1775

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 411/1090 (37%), Positives = 579/1090 (53%), Gaps = 185/1090 (16%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            + P+ V++++ KLW  E E+  F+        G+  G  IFF+  ++VPP K R    GG
Sbjct: 284  VTPTYVRNLLHKLWCEEREILEFLF---PASVGR--GEDIFFMQNIVVPPNKLRPLRFGG 338

Query: 302  DSVMEH----PQTVLLSKVLQANIYLAN-------AYVNQPDNAK--------------- 335
            DS          TV L  +L++N+ L         A  N  D  K               
Sbjct: 339  DSDDNQGFLPASTVCLKNILESNLLLKQLLETDQEAVENPNDREKAGDALPNLISDEDET 398

Query: 336  --------------VIVARWMNLQQSVNVLFDGKNA--AGQRDMASGICQLLEKKEGLFR 379
                           +    ++LQ +VN   D   +  A  + +A G+ QLLE+K+GLFR
Sbjct: 399  MKPVDNTPQRGPMTTLGTALIDLQNNVNNYLDSAKSGKAQNKVVAFGVRQLLERKQGLFR 458

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
             K+MGKRVNYA RSVISPD  L  N+IG+P + AL+LT PE V  +NV  LR  + NG +
Sbjct: 459  MKMMGKRVNYAARSVISPDVSLETNQIGLPMFAALQLTVPEPVNSFNVDYLRALVENGPD 518

Query: 440  IHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN-EFEGKMVYRHLQ 498
             +PGA   +         P+ K+ +S+  +    R AI +    S N + + ++V RH++
Sbjct: 519  KYPGAAAVVF--------PDGKL-VSLKGRQPHQRKAIARSLYQSTNPDKKPRVVLRHVR 569

Query: 499  DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
            DGD +LVNRQPTLHKP IMA  V+VL  EKT+RMHY+NC+T+NADFDGDE+N+H PQD  
Sbjct: 570  DGDPLLVNRQPTLHKPGIMALFVKVLSKEKTIRMHYSNCNTFNADFDGDEINLHCPQDSN 629

Query: 559  SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
            +RAEA  I +A++QY+ P++G PLR LIQDH+VS   LT +D F+ + E   L+Y++  +
Sbjct: 630  ARAEAIYIASADHQYLGPTSGKPLRGLIQDHVVSGVFLTARDHFMRKTEVQNLIYTAMRA 689

Query: 619  -----SSGLGSFTGKPGQRVLISR-----SEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
                 +SG+GS   + GQ   ++       +  ++   P I KP+ LWTGKQVIT  L  
Sbjct: 690  AIEGDTSGIGSVKSR-GQVTKLTTPAGVPKDFRIVMEPPVIVKPQTLWTGKQVITIFLKS 748

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
            + +                 F T             DK  ++  N   K K+        
Sbjct: 749  LIK-----------------FATH----------STDKAIVNGFNHHAKAKT-------- 773

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNT 786
              PG+      + +KE    E+ + I   +L+ GV+DKA F     GL H   EL G   
Sbjct: 774  --PGDLWGGVSDGNKE----EQMVTIRDTELIEGVLDKASFGATANGLTHLFYELCGPKA 827

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIG---KRVHLEAL 843
            AG LL+ + R+ T++LQ HGFTC + DLLI  + +  R   L  + E      R  ++  
Sbjct: 828  AGLLLTGMGRMLTLYLQYHGFTCAMRDLLITPEGDEARLQMLRKAREDSWNKIRDWVKEN 887

Query: 844  ELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQL--NKHTSSSVINELLSEGLL 901
              E+       KL+ EI K            F+    + L  N+     +I+ L  +G +
Sbjct: 888  SPEEANVKTLHKLQKEIGKLYAADPKVQHPMFEELEETMLSTNRDYWGKLIDILFPKGQV 947

Query: 902  KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 961
             P   N  S M ++GAKGSKVN   I + LGQQELEG R PRM + + LPSF  +D  PR
Sbjct: 948  SPFPDNCFSAMVSTGAKGSKVNHSMIDAMLGQQELEGHRAPRMRNQRFLPSFAQYDIGPR 1007

Query: 962  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1021
            AGG+I DRFLTG RPQE+++HCMAGREGLVDTAVKT+RSGYLQRCL+KNLE + I+YDY+
Sbjct: 1008 AGGYITDRFLTGYRPQEFFYHCMAGREGLVDTAVKTARSGYLQRCLVKNLEGITINYDYT 1067

Query: 1022 VRDADGSIVQFCYGEDGVDVHQTSFISKFDAL------------AARERGRGRGR----- 1064
            VRD D SIV+F YGEDG+DV + S + +FD L             A+E  +         
Sbjct: 1068 VRDTDSSIVEFLYGEDGMDVTKVSHLEQFDVLDENSAFMAKSAAVAKEEAKMESNLPALY 1127

Query: 1065 NKFCDKGSHTFVMGRNQEMIYKKC-----------SGQLDASN----------AYIME-- 1101
             K+ +K       GR  + + K+              Q+DAS+          A++++  
Sbjct: 1128 RKWAEKPQS----GRRTKELVKEVRESIRVLLSDGGNQVDASDKLRDEEKEHIAFVVKDT 1183

Query: 1102 -------------LP-----DALKDNAEKFADKFLSN-------EMAKQDFLKLVKHKFV 1136
                         LP      A+ +  E    ++LS+       +M  ++F  ++ HK+ 
Sbjct: 1184 HTNGGKAPPMNSMLPPWRFTGAMSEREENALTEYLSHRPEELEKKMPTEEFRDVIMHKYA 1243

Query: 1137 LSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKT 1196
             +LA PGE VG LA+Q +GEPSTQMTLNTFHLAG G +NVTLGIPRL+EI+  AS+ ++T
Sbjct: 1244 RTLADPGEAVGTLAAQGMGEPSTQMTLNTFHLAGHGGVNVTLGIPRLREIVQTASRHLET 1303

Query: 1197 PVITCPLLVG 1206
            P +  P+L G
Sbjct: 1304 PAMEFPVLGG 1313



 Score = 73.9 bits (180), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 40/67 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           CKTCG     CPGH GHI L   VYNP L   LY +L+R+C  C+HF+  +   ++   +
Sbjct: 68  CKTCGLGVHDCPGHLGHIKLATDVYNPFLIRTLYNVLRRMCTSCNHFRVRKAVTQRYCDR 127

Query: 61  LELIIKG 67
            +LI+ G
Sbjct: 128 FKLILAG 134


>gi|298707844|emb|CBJ30250.1| RNA polymerase 1-4 RNA polymerase I large subunit [Ectocarpus
            siliculosus]
          Length = 1234

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 351/803 (43%), Positives = 461/803 (57%), Gaps = 112/803 (13%)

Query: 278  GHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVI 337
            G+ +FF+  + VPP +FR P   GD + EHPQ V L+KVL  N  L NA   +  +   +
Sbjct: 389  GYRLFFVRALAVPPPRFRPPMNMGDMIAEHPQNVYLTKVLNLNESLKNAASLKGKDLASV 448

Query: 338  VARWMNLQQSVNVLFDG-KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            +  W+ LQ +VN   D  K+  G +D   G+ Q+LEKKEGLFR+ +MGKRVNYACRSVIS
Sbjct: 449  LTTWVELQTTVNCYMDSSKDPRGLKDTPPGLRQVLEKKEGLFRKHMMGKRVNYACRSVIS 508

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PDPY+   EIGIP  FA  LTYP+ V  WNV  +R  + NG  ++PGA    D    M  
Sbjct: 509  PDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRM-- 566

Query: 457  PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
                   + + R  D  R  +      S     G+ V+RHL DGD +LVNRQPTLHKP I
Sbjct: 567  -------LHLDRLSDLKRRGVAARLLSS----PGQKVWRHLTDGDCMLVNRQPTLHKPGI 615

Query: 517  MAHVVRVLK--GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYV 574
            MAH VRVL+  G +T+RMHYANC+TYNADFDGDE+N H PQ+E+++AEA  +   + QY+
Sbjct: 616  MAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQNELAKAEANLLAFTDEQYL 675

Query: 575  RPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVL 634
             P+NG PLR LIQDH+ +   +  KD F  R E+ QLLY          + +G PG  ++
Sbjct: 676  VPTNGKPLRGLIQDHVDAGVKMCSKDCFFTRGEYQQLLYQ---------ALSGLPGLEIV 726

Query: 635  ISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFN 694
                +   LP  PAI KP+  WTGKQV++ +L H+T+G P   ++   + P+  F     
Sbjct: 727  PPSDDITTLP--PAILKPQQRWTGKQVMSTILRHLTKGLPQLNLDGKSRTPKVAF----- 779

Query: 695  ADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLI 754
                                                     EAE+         E  ++ 
Sbjct: 780  ----------------------------------------GEAEQ---------EHVIVF 790

Query: 755  YKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
             + +L++GV+DK  F  +++GLVH V E+YGS  AG LL+AL R+ T+FLQ  G TCG++
Sbjct: 791  REGELLQGVLDKGAFGSSEFGLVHAVHEVYGSTAAGKLLTALGRVLTIFLQSSGHTCGIE 850

Query: 813  DLLILKDKERERKNHLHGSEEIGKRVHLEALEL-----------------EDG------- 848
            DL +    E  R+  ++ S  IG+R   E +E                  E+G       
Sbjct: 851  DLTLTGRAEGNRREIINKSLGIGQRSMRELVETVAAEGQDAKAIANGAAAEEGHEDTSKA 910

Query: 849  ---AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTG 905
               AE++ I+ K+     +    D  +A  D  M S L    SS +I   L  G  KP  
Sbjct: 911  LVEAEVESIRQKTA-SFLLGEDRDTRLAEIDRHMQSALAP-VSSDIIKACLPGGQAKPFP 968

Query: 906  KNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGF 965
             N  SLM  +GAKGS VN  Q+S  LGQQ LEG+RVP MVSGK+LPSF  ++ +PRA GF
Sbjct: 969  HNCFSLMVLTGAKGSMVNHSQVSCALGQQALEGRRVPVMVSGKSLPSFQAFEPSPRANGF 1028

Query: 966  IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDA 1025
            I DRFLTG+RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE LK+ YD +VRD 
Sbjct: 1029 ITDRFLTGIRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKHLEELKVGYDNTVRDG 1088

Query: 1026 DGSIVQFCYGEDGVDVHQTSFIS 1048
            +G + QF YGEDGVD  QT ++S
Sbjct: 1089 EGCVHQFLYGEDGVDTTQTKYLS 1111


>gi|119619873|gb|EAW99467.1| polymerase (RNA) I polypeptide A, 194kDa, isoform CRA_a [Homo
            sapiens]
 gi|119619875|gb|EAW99469.1| polymerase (RNA) I polypeptide A, 194kDa, isoform CRA_a [Homo
            sapiens]
          Length = 1720

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 403/1103 (36%), Positives = 574/1103 (52%), Gaps = 172/1103 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P  S++  +                     E 
Sbjct: 124  LRVLEVGALQAVYELERILNRFLEENADPSASEIREE--------------------LEQ 163

Query: 118  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNG--MPHADIRANLIRG 175
             + +  +  L   Q   ++      C++K+  I+   F   HMN    PH          
Sbjct: 164  YTTEIVQNNLLGSQGAHVKNV----CESKSKLIA--LFWKAHMNAKRCPH---------- 207

Query: 176  CNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQK 235
            C  G +    E    L                TFP      A   QK S   P G ++ +
Sbjct: 208  CKTGRSVVRKEHNSKLTI--------------TFPAMVHRTA--GQKDSE--PLGIEEAQ 249

Query: 236  DLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKF 294
                G L P+  ++ +  LW+NE F L    S M   G   +   S+FFL  ++VPP ++
Sbjct: 250  IGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRY 309

Query: 295  RLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKVI 337
            R  S+ GD +  + QTV L  V++  + +                 A    ++  ++ + 
Sbjct: 310  RPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVATPTTDEEKDSLIA 369

Query: 338  VAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFR 379
            + R                  W+ LQ  VN++FD +      D   GI Q+LEKKEGLFR
Sbjct: 370  IDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFR 429

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
            + +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING  
Sbjct: 430  KHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPN 489

Query: 440  IHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
            +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH+
Sbjct: 490  VHPGASMVINEDGSRTALSAVDMTQREAVAKQLLT-------PATGAPKPQGTKIVCRHV 542

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            ++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ E
Sbjct: 543  KNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSE 602

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
            + RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+ + +L+Y    
Sbjct: 603  LGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYR--- 659

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
                    T K G+  L+S          P+I KP PLWTGKQV++ +L +I        
Sbjct: 660  ------GLTDKVGRVKLLS----------PSILKPFPLWTGKQVVSTLLINI-------- 695

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEA 737
                  +P+D                N  GK   T K         KE     PG   ++
Sbjct: 696  ------IPEDHIPL------------NLSGKAKITGK------AWVKETPRSVPGFNPDS 731

Query: 738  EKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALS 795
                     + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L+
Sbjct: 732  ---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLA 782

Query: 796  RLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
            RLFT +LQ++ GFT GV+D+L+    + +R+  +  S   G +    AL L + A  D +
Sbjct: 783  RLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEV 842

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
            + K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M  
Sbjct: 843  RGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQMMVQ 899

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG+
Sbjct: 900  SGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGI 959

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
            +P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF Y
Sbjct: 960  KPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLY 1019

Query: 1035 GEDGVDVHQTSFIS--KFDALAA 1055
            GEDG+D+ +T F+   +F  LA+
Sbjct: 1020 GEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 81/114 (71%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL +PGE VGLLA+QS
Sbjct: 1159 VSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 1218

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L  K
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTK 1272


>gi|119619874|gb|EAW99468.1| polymerase (RNA) I polypeptide A, 194kDa, isoform CRA_b [Homo
            sapiens]
          Length = 1128

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 400/1104 (36%), Positives = 576/1104 (52%), Gaps = 174/1104 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P  S++  +                     E 
Sbjct: 124  LRVLEVGALQAVYELERILNRFLEENADPSASEIREE--------------------LEQ 163

Query: 118  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNG--MPHADIRANLIRG 175
             + +  +  L   Q   ++      C++K+  I+   F   HMN    PH          
Sbjct: 164  YTTEIVQNNLLGSQGAHVKNV----CESKSKLIA--LFWKAHMNAKRCPH---------- 207

Query: 176  CNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPG-TQDTAARRHQKGSGAVPSGFKKQ 234
            C  G +    E    L                TFP     TA ++  +     P G ++ 
Sbjct: 208  CKTGRSVVRKEHNSKLTI--------------TFPAMVHRTAGQKDSE-----PLGIEEA 248

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L P+  ++ +  LW+NE F L    S M   G   +   S+FFL  ++VPP +
Sbjct: 249  QIGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSR 308

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKV 336
            +R  S+ GD +  + QTV L  V++  + +                 A    ++  ++ +
Sbjct: 309  YRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVATPTTDEEKDSLI 368

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             + R                  W+ LQ  VN++FD +      D   GI Q+LEKKEGLF
Sbjct: 369  AIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLF 428

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 429  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 488

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 489  NVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLT-------PATGAPKPQGTKIVCRH 541

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 542  VKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 601

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+ + +L+Y   
Sbjct: 602  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYR-- 659

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L+S          P+I KP PLWTGKQV++ +L +I       
Sbjct: 660  -------GLTDKVGRVKLLS----------PSILKPFPLWTGKQVVSTLLINI------- 695

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D                N  GK   T K         KE     PG   +
Sbjct: 696  -------IPEDHIPL------------NLSGKAKITGK------AWVKETPRSVPGFNPD 730

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
            +         + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L
Sbjct: 731  S---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCL 781

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT GV+D+L+    + +R+  +  S   G +    AL L + A  D 
Sbjct: 782  ARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYD- 840

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
             +++ + + A  G         D+K   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 841  -EVRGKWQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQMMV 898

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 899  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 958

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            ++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF 
Sbjct: 959  IKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFL 1018

Query: 1034 YGEDGVDVHQTSFIS--KFDALAA 1055
            YGEDG+D+ +T F+   +F  LA+
Sbjct: 1019 YGEDGLDIPKTQFLQPKQFPFLAS 1042


>gi|294911649|ref|XP_002778030.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
            marinus ATCC 50983]
 gi|239886151|gb|EER09825.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
            marinus ATCC 50983]
          Length = 1774

 Score =  621 bits (1601), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 405/1075 (37%), Positives = 575/1075 (53%), Gaps = 170/1075 (15%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            + P+ V++++ KLW  E ++  F+        G+  G  IFF+  ++VPP K R    GG
Sbjct: 284  VTPTYVRNLLHKLWREERQVLEFLF---PASVGR--GEDIFFMQNIVVPPNKLRPLRFGG 338

Query: 302  DSVMEH----PQTVLLSKVLQANIYLANAY------VNQP-------------------- 331
            DS          TV L  +L++N+ L          V  P                    
Sbjct: 339  DSDDNQGFLPASTVCLKNILESNLLLKQLLETDQEAVENPNEREKAGDALPNLISDEDET 398

Query: 332  ----DNA------KVIVARWMNLQQSVNVLFDGKNA--AGQRDMASGICQLLEKKEGLFR 379
                DN         +    ++LQ +VN   D   +  A  + +A G+ QLLE+K+GLFR
Sbjct: 399  MKPVDNTPQRGPMTTLGTALIDLQNNVNNYLDSAKSGKAQNKVVAFGVRQLLERKQGLFR 458

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
             K+MGKRVNYA RSVISPD  L  N+IG+P + AL+LT PE V  +NV  LR  + NG +
Sbjct: 459  MKMMGKRVNYAARSVISPDVSLETNQIGLPMFAALQLTVPEPVNSFNVDYLRALVENGPD 518

Query: 440  IHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN-EFEGKMVYRHLQ 498
             +PGA   +         P+ K+ +S+  +    R AI +    S N + + ++V RH++
Sbjct: 519  KYPGAAAVVF--------PDGKL-VSLKGRQPHQRKAIARSLYQSTNPDKKPRVVLRHVR 569

Query: 499  DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
            DGD +LVNRQPTLHKP IMA  V+VL  EKT+RMHY+NC+T+NADFDGDE+N+H PQD  
Sbjct: 570  DGDPLLVNRQPTLHKPGIMALFVKVLSKEKTIRMHYSNCNTFNADFDGDEINLHCPQDSN 629

Query: 559  SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
            +RAEA  I +A++QY+ P++G PLR LIQDH+VS   LT +D F+ + E   L+Y++  +
Sbjct: 630  ARAEAIYIASADHQYLGPTSGKPLRGLIQDHVVSGVFLTARDHFMRKTEVQNLIYTAMRA 689

Query: 619  -----SSGLGSFTGKPGQRVLISR-----SEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
                 +SG+GS   + GQ   ++       +  ++   P I KP+ LWTGKQVIT  L  
Sbjct: 690  AIEGDTSGIGSVKSR-GQVTKLTTPAGVPKDFRIVMEPPVIVKPQTLWTGKQVITIFLKS 748

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
            + +                 F T             DK  ++  N   K K+        
Sbjct: 749  LIK-----------------FATH----------STDKAIVNGFNHHAKAKT-------- 773

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNT 786
              PG+      + +KE    E+ + I   +L+ GV+DKA F     GL H   EL G   
Sbjct: 774  --PGDLWGGVSDGNKE----EQMVTIRDTELIEGVLDKASFGATANGLTHLFYELCGPKA 827

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIG---KRVHLEAL 843
            AG LL+ + R+ T++LQ HGFTC + DLLI  + +  R   L  + E      R  ++  
Sbjct: 828  AGLLLTGMGRMLTLYLQYHGFTCAMRDLLITPEGDEARLQMLRKAREDSWNKIRDWVKEN 887

Query: 844  ELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQL--NKHTSSSVINELLSEGLL 901
              E+       KL+ EI K            F+    + L  N+     +I+ L  +G +
Sbjct: 888  SPEEANVKTLHKLQKEIGKLYAADPKVQHPMFEELEETMLSTNRDYWGKLIDILFPKGQV 947

Query: 902  KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 961
             P   N  S M ++GAKGSKVN   I + LGQQELEG R PRM + + LPSF  +D  PR
Sbjct: 948  SPFPDNCFSAMVSTGAKGSKVNHSMIDAMLGQQELEGHRAPRMRNQRFLPSFAQYDIGPR 1007

Query: 962  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1021
            AGG+I DRFLTG RPQE+++HCMAGREGLVDTAVKT+RSGYLQRCL+KNLE + I+YDY+
Sbjct: 1008 AGGYITDRFLTGYRPQEFFYHCMAGREGLVDTAVKTARSGYLQRCLVKNLEGITINYDYT 1067

Query: 1022 VRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ 1081
            VRD D SIV+F YGEDG+DV + S + +FD L        +      ++      M  N 
Sbjct: 1068 VRDTDSSIVEFLYGEDGMDVTKVSHLEQFDVLDENSAFMAKSAAVAKEEAK----MESNL 1123

Query: 1082 EMIYKKCS-------------GQLDASN----------AYIME---------------LP 1103
              +Y+K +              +++AS+          A++++               LP
Sbjct: 1124 PALYRKWAEKPQSGRRTKDLVKEVNASDKLRDEEKEHIAFVVKDTHTNGGKAPPMNSMLP 1183

Query: 1104 -----DALKDNAEKFADKFLSN-------EMAKQDFLKLVKHKFVLSLAQPGEPVGLLAS 1151
                  A+ +  E    ++LS+       +M  ++F  ++ HK+  +LA PGE VG LA+
Sbjct: 1184 PWRFTGAMSEREENALTEYLSHRPEELEKKMPTEEFRDVIMHKYARTLADPGEAVGTLAA 1243

Query: 1152 QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVG 1206
            Q +GEPSTQMTLNTFHLAG G +NVTLGIPRL+EI+  AS+ ++TP +  P+L G
Sbjct: 1244 QGMGEPSTQMTLNTFHLAGHGGVNVTLGIPRLREIVQTASRHLETPAMEFPVLGG 1298



 Score = 73.2 bits (178), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           CKTCG     CPGH GHI L   VYNP L   LY +L+R+C  C+HF+      ++   +
Sbjct: 68  CKTCGLGVHDCPGHLGHIKLATDVYNPFLIRTLYNVLRRMCTSCNHFRVREAVTQRYCDR 127

Query: 61  LELIIKG 67
            +LI+ G
Sbjct: 128 FKLILAG 134


>gi|103471997|ref|NP_056240.2| DNA-directed RNA polymerase I subunit RPA1 [Homo sapiens]
 gi|215273873|sp|O95602.2|RPA1_HUMAN RecName: Full=DNA-directed RNA polymerase I subunit RPA1; Short=RNA
            polymerase I subunit A1; AltName: Full=A190; AltName:
            Full=DNA-directed RNA polymerase I largest subunit;
            AltName: Full=DNA-directed RNA polymerase I subunit A;
            AltName: Full=RNA polymerase I 194 kDa subunit;
            Short=RPA194
 gi|111599664|gb|AAI17174.1| Polymerase (RNA) I polypeptide A, 194kDa [Homo sapiens]
 gi|116497177|gb|AAI26304.1| Polymerase (RNA) I polypeptide A, 194kDa [Homo sapiens]
 gi|221044078|dbj|BAH13716.1| unnamed protein product [Homo sapiens]
          Length = 1720

 Score =  620 bits (1599), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 403/1103 (36%), Positives = 573/1103 (51%), Gaps = 172/1103 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+ +P  S++  +                     E 
Sbjct: 124  LRVLEVGALQAVYELERILNRFLEENPDPSASEIREE--------------------LEQ 163

Query: 118  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNG--MPHADIRANLIRG 175
             + +  +  L   Q   ++      C++K+  I+   F   HMN    PH          
Sbjct: 164  YTTEIVQNNLLGSQGAHVKNV----CESKSKLIA--LFWKAHMNAKRCPH---------- 207

Query: 176  CNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQK 235
            C  G +    E    L                TFP      A   QK S   P G ++ +
Sbjct: 208  CKTGRSVVRKEHNSKLTI--------------TFPAMVHRTA--GQKDSE--PLGIEEAQ 249

Query: 236  DLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKF 294
                G L P+  ++ +  LW+NE F L    S M   G   +   S+FFL  ++VPP ++
Sbjct: 250  IGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRY 309

Query: 295  RLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKVI 337
            R  S+ GD +  + QTV L  V++  + +                 A    ++  ++ + 
Sbjct: 310  RPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVATPTTDEEKDSLIA 369

Query: 338  VAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFR 379
            + R                  W+ LQ  VN++FD +      D   GI Q+LEKKEGLFR
Sbjct: 370  IDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFR 429

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
            + +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING  
Sbjct: 430  KHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPN 489

Query: 440  IHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
            +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH+
Sbjct: 490  VHPGASMVINEDGSRTALSAVDMTQREAVAKQLLT-------PATGAPKPQGTKIVCRHV 542

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            ++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ E
Sbjct: 543  KNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSE 602

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
            + RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+ + +L+Y    
Sbjct: 603  LGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYR--- 659

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
                    T K G+  L+S          P+I KP PLWTGKQV++ +L +I        
Sbjct: 660  ------GLTDKVGRVKLLS----------PSILKPFPLWTGKQVVSTLLINI-------- 695

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEA 737
                  +P+D                N  GK   T K         KE     PG   ++
Sbjct: 696  ------IPEDHIPL------------NLSGKAKITGK------AWVKETPRSVPGFNPDS 731

Query: 738  EKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALS 795
                     + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L+
Sbjct: 732  ---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLA 782

Query: 796  RLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
            RLFT +LQ++ GFT GV+D+L+    + +R+  +  S   G +    AL L + A  D +
Sbjct: 783  RLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEV 842

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
            + K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M  
Sbjct: 843  RGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQMMVQ 899

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG+
Sbjct: 900  SGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGI 959

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
            +P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF Y
Sbjct: 960  KPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLY 1019

Query: 1035 GEDGVDVHQTSFIS--KFDALAA 1055
            GEDG+D+ +T F+   +F  LA+
Sbjct: 1020 GEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 81/114 (71%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL +PGE VGLLA+QS
Sbjct: 1159 VSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 1218

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L  K
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTK 1272


>gi|294935326|ref|XP_002781387.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
            marinus ATCC 50983]
 gi|239891968|gb|EER13182.1| DNA-directed RNA polymerase I largest subunit, putative [Perkinsus
            marinus ATCC 50983]
          Length = 1662

 Score =  620 bits (1599), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 405/1062 (38%), Positives = 564/1062 (53%), Gaps = 170/1062 (16%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            + P+ V++++ KLW  E E+  F+        G+  G  IFF+  ++VPP K R    GG
Sbjct: 165  VTPTYVRNLLHKLWCEEREILEFLF---PASVGR--GEDIFFMQNIVVPPNKLRPLRFGG 219

Query: 302  DSVMEH----PQTVLLSKVLQANIYLAN-------AYVNQPDNAK--------------- 335
            DS          TV L  +L++N+ L         A  N  D  K               
Sbjct: 220  DSDDNQGFLPASTVCLKNILESNLLLKQLLETDQEAVENPNDREKAGDALPNLISDEDET 279

Query: 336  --------------VIVARWMNLQQSVNVLFDGKNA--AGQRDMASGICQLLEKKEGLFR 379
                           +    ++LQ +VN   D   +  A  + +A G+ QLLE+K+GLFR
Sbjct: 280  MKPVDNTPQRGPMTTLGTALIDLQNNVNNYLDSAKSGKAQNKVVAFGVRQLLERKQGLFR 339

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
             K+MGKRVNYA RSVISPD  L  N+IG+P + AL+LT PE V  +NV  LR  + NG +
Sbjct: 340  MKMMGKRVNYAARSVISPDVSLETNQIGLPMFAALQLTVPEPVNSFNVDYLRALVENGPD 399

Query: 440  IHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN-EFEGKMVYRHLQ 498
             +PGA   +         P+ K+ +S+  +    R AI +    S N + + ++V RH++
Sbjct: 400  KYPGAAAVVF--------PDGKL-VSLKGRQPHQRKAIARSLYQSTNPDKKPRVVLRHVR 450

Query: 499  DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
            DGD +LVNRQPTLHKP IMA  V+VL  EKT+RMHY+NC+T+NADFDGDE+N+H PQD  
Sbjct: 451  DGDPLLVNRQPTLHKPGIMALFVKVLSKEKTIRMHYSNCNTFNADFDGDEINLHCPQDSN 510

Query: 559  SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
            +RAEA  I +A++QY+ P++G PLR LIQDH+VS   LT +D F+ + E   L+Y++  +
Sbjct: 511  ARAEAIYIASADHQYLGPTSGKPLRGLIQDHVVSGVFLTARDHFMRKTEVQNLIYTAMRA 570

Query: 619  SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVV 678
            +    +   +P                 P I KP+ LWTGKQVIT  L  + +       
Sbjct: 571  AIEGDTIVMEP-----------------PVIVKPQTLWTGKQVITIFLKSLIK------- 606

Query: 679  ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 738
                      F T             DK  ++  N   K K+          PG+     
Sbjct: 607  ----------FATH----------STDKAVVNGFNHHAKAKT----------PGDLWGGV 636

Query: 739  KNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSR 796
             + +KE    E+ + I   +L+ GV+DKA F     GL H   EL G   AG LL+ + R
Sbjct: 637  SDGNKE----EQMVTIRDTELIEGVLDKASFGATANGLTHLFYELCGPKAAGLLLTGMGR 692

Query: 797  LFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIG---KRVHLEALELEDGAEIDP 853
            + T++LQ HGFTC + DLLI  + +  R   L  + E      R  ++    E+      
Sbjct: 693  MLTLYLQYHGFTCAMRDLLITPEGDEARLQMLRKAREDSWNKIRDWVKENSPEEANVKTL 752

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQL--NKHTSSSVINELLSEGLLKPTGKNWISL 911
             KL+ EI K            F+    + L  N+     +I+ L  +G + P   N  S 
Sbjct: 753  HKLQKEIGKLYAADPKVQHPMFEELEETMLSTNRDYWGKLIDILFPKGQVSPFPDNCFSA 812

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            M ++GAKGSKVN   I + LGQQELEG R PRM + + LPSF  +D  PRAGG+I DRFL
Sbjct: 813  MVSTGAKGSKVNHSMIDAMLGQQELEGHRAPRMRNQRFLPSFAQYDIGPRAGGYITDRFL 872

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            TG RPQE+++HCMAGREGLVDTAVKT+RSGYLQRCL+KNLE + I+YDY+VRD D SIV+
Sbjct: 873  TGYRPQEFFYHCMAGREGLVDTAVKTARSGYLQRCLVKNLEGITINYDYTVRDTDSSIVE 932

Query: 1032 FCYGEDGVDVHQTSFISKFDAL------------AARERGR------------------G 1061
            F YGEDG+DV + S + +FD L             A+E  +                  G
Sbjct: 933  FLYGEDGMDVTKVSHLEQFDVLDENSAFMAKSAAVAKEEAKMESNLPALYRKWAEKPQSG 992

Query: 1062 RGRNKFCDKGSHTFVMGRNQE-----MIYKKC---SGQLDASNAYI--MELPDALKDNAE 1111
            R R K   KG +     R++E      + K      G+    N+ +       A+ +  E
Sbjct: 993  R-RTKDLVKGVNASDKLRDEEKEHIAFVVKDTHTNGGKAPPMNSMLPPWRFTGAMSEREE 1051

Query: 1112 KFADKFLSN-------EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLN 1164
                ++LS+       +M  ++F  ++ HK+  +LA PGE VG LA+Q +GEPSTQMTLN
Sbjct: 1052 NALTEYLSHRPEELEKKMPTEEFRDVIMHKYARTLADPGEAVGTLAAQGMGEPSTQMTLN 1111

Query: 1165 TFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVG 1206
            TFHLAG G +NVTLGIPRL+EI+  AS+ ++TP +  P+L G
Sbjct: 1112 TFHLAGHGGVNVTLGIPRLREIVQTASRHLETPAMEFPVLGG 1153


>gi|410035335|ref|XP_003949878.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Pan
            troglodytes]
          Length = 1659

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 401/1103 (36%), Positives = 575/1103 (52%), Gaps = 172/1103 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P  S++  +                     E 
Sbjct: 124  LRVLEVGALQAVYELERILNRFLEENADPSASEIREE--------------------LEQ 163

Query: 118  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNG--MPHADIRANLIRG 175
             + +  +  L   Q   ++      C++++  I+   F   HMN    PH          
Sbjct: 164  YTTEIVQNNLLGSQGAHVKNV----CESRSKLIA--LFWKAHMNAKRCPH---------- 207

Query: 176  CNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQK 235
            C  G +    E    L                TFP      A   QK S   P G ++ +
Sbjct: 208  CKTGRSIVRKEHNSKLTI--------------TFPAMVHRTA--GQKDSE--PLGIEEAQ 249

Query: 236  DLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKF 294
                G L P+  ++ +  LW+NE F L    S M   G   +   S+FFL  ++VPP ++
Sbjct: 250  IGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRY 309

Query: 295  RLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKVI 337
            R  S+ GD +  + QTV L  V++  + +                 A    ++  ++ + 
Sbjct: 310  RPVSRLGDQMFTNGQTVNLQAVMKDVVLIQKLLALMAQEQNLPEEVATPTTDEEKDSLIA 369

Query: 338  VAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFR 379
            + R                  W+ LQ  VN++FD +      D   GI Q+LEKKEGLFR
Sbjct: 370  IDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFR 429

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
            + +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING  
Sbjct: 430  KHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPN 489

Query: 440  IHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
            +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH+
Sbjct: 490  VHPGASMVINEDGSRTALSAVDMTQREAVAKQLLT-------PAMGAPKPQGTKIVCRHV 542

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            ++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ E
Sbjct: 543  KNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSE 602

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
            + RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y    
Sbjct: 603  LGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREQYMELVYRG-- 660

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
                    T K G+  L+S          P+I KP  LWTGKQV++ +L +I        
Sbjct: 661  -------LTDKVGRVKLLS----------PSILKPFALWTGKQVVSTLLINI-------- 695

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEA 737
                  +P+D                N  GK   T K         KE  +  PG   ++
Sbjct: 696  ------IPEDHIPL------------NLSGKAKITGK------AWVKETPQSVPGFNPDS 731

Query: 738  EKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALS 795
                     + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L+
Sbjct: 732  ---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLA 782

Query: 796  RLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
            RLFT +LQ++ GFT GV+D+L+    + +R+  +  S   G +    AL L + A  D +
Sbjct: 783  RLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEV 842

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
            + K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M  
Sbjct: 843  RGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQMMVQ 899

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG+
Sbjct: 900  SGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGI 959

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
            +P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF Y
Sbjct: 960  KPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLY 1019

Query: 1035 GEDGVDVHQTSFIS--KFDALAA 1055
            GEDG+D+ +T F+   +F  LA+
Sbjct: 1020 GEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 80/114 (70%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL +PGE VGLLA+QS
Sbjct: 1159 VSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 1218

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP++  P+L  K
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMRVPVLNTK 1272


>gi|197102302|ref|NP_001127373.1| DNA-directed RNA polymerase I subunit RPA1 [Pongo abelii]
 gi|55728685|emb|CAH91082.1| hypothetical protein [Pongo abelii]
          Length = 1659

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 403/1104 (36%), Positives = 572/1104 (51%), Gaps = 174/1104 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDL---DLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+     L  E+++P  S++  +                       
Sbjct: 124  LRVLEVGALQAVYELERILNRLLEENADPSASEIQEE----------------------- 160

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
              L+   A++     L  +     N C++K+  I+   F   HMN    PH         
Sbjct: 161  --LEQYTAEIVQNNLLGSQGAHVKNVCESKSKLIA--LFWKAHMNAKRCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L                TFP      A   QK S   P G ++ 
Sbjct: 208  -CKTGRSVVRKEHNSKLTI--------------TFPAMVHRTA--GQKDSE--PLGIEEA 248

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L P+  ++ +  LW+NE F L    S M   G   +   S+FFL  ++VPP +
Sbjct: 249  QIGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSR 308

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKV 336
            +R  S+ GD +  + QTV L  V++  + +                 A    ++  ++ +
Sbjct: 309  YRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVAAPTTDEEKDSLI 368

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             + R                  W+ LQ  VN++FD +      D   GI Q+LEKKEGLF
Sbjct: 369  AIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLF 428

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 429  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 488

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 489  NVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLT-------PATGAPKPQGTKIVCRH 541

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  RVL  EK LR+HYANC  YNAD DGDEMN HFPQ 
Sbjct: 542  VKNGDILLLNRQPTLHRPSIQAHRARVLPEEKVLRLHYANCKAYNADLDGDEMNAHFPQS 601

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y   
Sbjct: 602  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREQYMELVYR-- 659

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L+S          P+I KP PLWTGKQV++ +L +I       
Sbjct: 660  -------GLTDKVGRVKLLS----------PSILKPFPLWTGKQVVSTLLINI------- 695

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D                N  GK   T K         KE     PG   +
Sbjct: 696  -------IPEDHIPL------------NLSGKAKITGK------AWVKETPRSIPGFNPD 730

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
            +         + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L
Sbjct: 731  S---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCL 781

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT GV+D+L+    +  R+  +  S   G +    AL L + A  D 
Sbjct: 782  ARLFTAYLQLYRGFTLGVEDILVKPKADVRRQRIIEESTHCGPQAVRAALNLPEAASYDE 841

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            ++ K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 842  VRGK--WQDAHLGRDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQMMV 898

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 899  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 958

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            ++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DG +VQF 
Sbjct: 959  IKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGRVVQFL 1018

Query: 1034 YGEDGVDVHQTSFIS--KFDALAA 1055
            YGEDG+D+ +T F+   +F  LA+
Sbjct: 1019 YGEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  116 bits (291), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 81/114 (71%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL +PGE VGLLA+QS
Sbjct: 1159 VSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 1218

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L  K
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTK 1272


>gi|410353619|gb|JAA43413.1| polymerase (RNA) I polypeptide A, 194kDa [Pan troglodytes]
          Length = 1720

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 401/1103 (36%), Positives = 575/1103 (52%), Gaps = 172/1103 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P  S++  +                     E 
Sbjct: 124  LRVLEVGALQAVYELERILNRFLEENADPSASEIREE--------------------LEQ 163

Query: 118  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNG--MPHADIRANLIRG 175
             + +  +  L   Q   ++      C++++  I+   F   HMN    PH          
Sbjct: 164  YTTEIVQNNLLGSQGAHVKNV----CESRSKLIA--LFWKAHMNAKRCPH---------- 207

Query: 176  CNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQK 235
            C  G +    E    L                TFP      A   QK S   P G ++ +
Sbjct: 208  CKTGRSIVRKEHNSKLTI--------------TFPAMVHRTA--GQKDSE--PLGIEEAQ 249

Query: 236  DLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKF 294
                G L P+  ++ +  LW+NE F L    S M   G   +   S+FFL  ++VPP ++
Sbjct: 250  IGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRY 309

Query: 295  RLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKVI 337
            R  S+ GD +  + QTV L  V++  + +                 A    ++  ++ + 
Sbjct: 310  RPVSRLGDQMFTNGQTVNLQAVMKDVVLIQKLLALMAQEQNLPEEVATPTTDEEKDSLIA 369

Query: 338  VAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFR 379
            + R                  W+ LQ  VN++FD +      D   GI Q+LEKKEGLFR
Sbjct: 370  IDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFR 429

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
            + +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING  
Sbjct: 430  KHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPN 489

Query: 440  IHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
            +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH+
Sbjct: 490  VHPGASMVINEDGSRTALSAVDMTQREAVAKQLLT-------PATGAPKPQGTKIVCRHV 542

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            ++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ E
Sbjct: 543  KNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSE 602

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
            + RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y    
Sbjct: 603  LGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREQYMELVYRG-- 660

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
                    T K G+  L+S          P+I KP  LWTGKQV++ +L +I        
Sbjct: 661  -------LTDKVGRVKLLS----------PSILKPFALWTGKQVVSTLLINI-------- 695

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEA 737
                  +P+D                N  GK   T K         KE  +  PG   ++
Sbjct: 696  ------IPEDHIPL------------NLSGKAKITGK------AWVKETPQSVPGFNPDS 731

Query: 738  EKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALS 795
                     + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L+
Sbjct: 732  ---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLA 782

Query: 796  RLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
            RLFT +LQ++ GFT GV+D+L+    + +R+  +  S   G +    AL L + A  D +
Sbjct: 783  RLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEV 842

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
            + K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M  
Sbjct: 843  RGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQMMVQ 899

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG+
Sbjct: 900  SGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGI 959

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
            +P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF Y
Sbjct: 960  KPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLY 1019

Query: 1035 GEDGVDVHQTSFIS--KFDALAA 1055
            GEDG+D+ +T F+   +F  LA+
Sbjct: 1020 GEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 80/114 (70%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL +PGE VGLLA+QS
Sbjct: 1159 VSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 1218

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP++  P+L  K
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMRVPVLNTK 1272


>gi|410216876|gb|JAA05657.1| polymerase (RNA) I polypeptide A, 194kDa [Pan troglodytes]
 gi|410255060|gb|JAA15497.1| polymerase (RNA) I polypeptide A, 194kDa [Pan troglodytes]
 gi|410306946|gb|JAA32073.1| polymerase (RNA) I polypeptide A, 194kDa [Pan troglodytes]
          Length = 1720

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 401/1103 (36%), Positives = 575/1103 (52%), Gaps = 172/1103 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P  S++  +                     E 
Sbjct: 124  LRVLEVGALQAVYELERILNRFLEENADPSASEIREE--------------------LEQ 163

Query: 118  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNG--MPHADIRANLIRG 175
             + +  +  L   Q   ++      C++++  I+   F   HMN    PH          
Sbjct: 164  YTTEIVQNNLLGSQGAHVKNV----CESRSKLIA--LFWKAHMNAKRCPH---------- 207

Query: 176  CNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQK 235
            C  G +    E    L                TFP      A   QK S   P G ++ +
Sbjct: 208  CKTGRSIVRKEHNSKLTI--------------TFPAMVHRTA--GQKDSE--PLGIEEAQ 249

Query: 236  DLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKF 294
                G L P+  ++ +  LW+NE F L    S M   G   +   S+FFL  ++VPP ++
Sbjct: 250  IGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRY 309

Query: 295  RLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKVI 337
            R  S+ GD +  + QTV L  V++  + +                 A    ++  ++ + 
Sbjct: 310  RPVSRLGDQMFTNGQTVNLQAVMKDVVLIQKLLALMAQEQNLPEEVATPTTDEEKDSLIA 369

Query: 338  VAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFR 379
            + R                  W+ LQ  VN++FD +      D   GI Q+LEKKEGLFR
Sbjct: 370  IDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFR 429

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
            + +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING  
Sbjct: 430  KHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPN 489

Query: 440  IHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
            +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH+
Sbjct: 490  VHPGASMVINEDGSRTALSAVDMTQREAVAKQLLT-------PAMGAPKPQGTKIVCRHV 542

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            ++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ E
Sbjct: 543  KNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSE 602

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
            + RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y    
Sbjct: 603  LGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREQYMELVYRG-- 660

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
                    T K G+  L+S          P+I KP  LWTGKQV++ +L +I        
Sbjct: 661  -------LTDKVGRVKLLS----------PSILKPFALWTGKQVVSTLLINI-------- 695

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEA 737
                  +P+D                N  GK   T K         KE  +  PG   ++
Sbjct: 696  ------IPEDHIPL------------NLSGKAKITGK------AWVKETPQSVPGFNPDS 731

Query: 738  EKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALS 795
                     + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L+
Sbjct: 732  ---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLA 782

Query: 796  RLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
            RLFT +LQ++ GFT GV+D+L+    + +R+  +  S   G +    AL L + A  D +
Sbjct: 783  RLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEV 842

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
            + K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M  
Sbjct: 843  RGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQMMVQ 899

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG+
Sbjct: 900  SGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGI 959

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
            +P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF Y
Sbjct: 960  KPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLY 1019

Query: 1035 GEDGVDVHQTSFIS--KFDALAA 1055
            GEDG+D+ +T F+   +F  LA+
Sbjct: 1020 GEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 80/114 (70%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL +PGE VGLLA+QS
Sbjct: 1159 VSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 1218

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP++  P+L  K
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMRVPVLNTK 1272


>gi|332813686|ref|XP_001135380.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform 3 [Pan
            troglodytes]
          Length = 1720

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 401/1103 (36%), Positives = 575/1103 (52%), Gaps = 172/1103 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P  S++  +                     E 
Sbjct: 124  LRVLEVGALQAVYELERILNRFLEENADPSASEIREE--------------------LEQ 163

Query: 118  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNG--MPHADIRANLIRG 175
             + +  +  L   Q   ++      C++++  I+   F   HMN    PH          
Sbjct: 164  YTTEIVQNNLLGSQGAHVKNV----CESRSKLIA--LFWKAHMNAKRCPH---------- 207

Query: 176  CNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQK 235
            C  G +    E    L                TFP      A   QK S   P G ++ +
Sbjct: 208  CKTGRSIVRKEHNSKLTI--------------TFPAMVHRTA--GQKDSE--PLGIEEAQ 249

Query: 236  DLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKF 294
                G L P+  ++ +  LW+NE F L    S M   G   +   S+FFL  ++VPP ++
Sbjct: 250  IGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRY 309

Query: 295  RLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKVI 337
            R  S+ GD +  + QTV L  V++  + +                 A    ++  ++ + 
Sbjct: 310  RPVSRLGDQMFTNGQTVNLQAVMKDVVLIQKLLALMAQEQNLPEEVATPTTDEEKDSLIA 369

Query: 338  VAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFR 379
            + R                  W+ LQ  VN++FD +      D   GI Q+LEKKEGLFR
Sbjct: 370  IDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFR 429

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
            + +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING  
Sbjct: 430  KHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPN 489

Query: 440  IHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
            +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH+
Sbjct: 490  VHPGASMVINEDGSRTALSAVDMTQREAVAKQLLT-------PAMGAPKPQGTKIVCRHV 542

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            ++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ E
Sbjct: 543  KNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSE 602

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
            + RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y    
Sbjct: 603  LGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREQYMELVYRG-- 660

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
                    T K G+  L+S          P+I KP  LWTGKQV++ +L +I        
Sbjct: 661  -------LTDKVGRVKLLS----------PSILKPFALWTGKQVVSTLLINI-------- 695

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEA 737
                  +P+D                N  GK   T K         KE  +  PG   ++
Sbjct: 696  ------IPEDHIPL------------NLSGKAKITGK------AWVKETPQSVPGFNPDS 731

Query: 738  EKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALS 795
                     + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L+
Sbjct: 732  ---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLA 782

Query: 796  RLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
            RLFT +LQ++ GFT GV+D+L+    + +R+  +  S   G +    AL L + A  D +
Sbjct: 783  RLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEV 842

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
            + K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M  
Sbjct: 843  RGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQMMVQ 899

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG+
Sbjct: 900  SGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGI 959

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
            +P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF Y
Sbjct: 960  KPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLY 1019

Query: 1035 GEDGVDVHQTSFIS--KFDALAA 1055
            GEDG+D+ +T F+   +F  LA+
Sbjct: 1020 GEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 80/114 (70%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL +PGE VGLLA+QS
Sbjct: 1159 VSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 1218

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP++  P+L  K
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMRVPVLNTK 1272


>gi|397491322|ref|XP_003816616.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Pan paniscus]
          Length = 1720

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 401/1103 (36%), Positives = 575/1103 (52%), Gaps = 172/1103 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P  S++  +                     E 
Sbjct: 124  LRVLEVGALQAVYELERILNRFLEENADPSASEIREE--------------------LEQ 163

Query: 118  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNG--MPHADIRANLIRG 175
             + +  +  L   Q   ++      C++++  I+   F   HMN    PH          
Sbjct: 164  YTTEIVQNNLLGSQGAHVKNV----CESRSKLIA--LFWKAHMNAKRCPH---------- 207

Query: 176  CNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQK 235
            C  G +    E    L                TFP      A   QK S   P G ++ +
Sbjct: 208  CKTGRSIVRKEHNSKLTI--------------TFPAMVHRTA--GQKDSE--PLGIEEAQ 249

Query: 236  DLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKF 294
                G L P+  ++ +  LW+NE F L    S M   G   +   S+FFL  ++VPP ++
Sbjct: 250  IGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRY 309

Query: 295  RLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKVI 337
            R  S+ GD +  + QTV L  V++  + +                 A    ++  ++ + 
Sbjct: 310  RPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQNLPEEVATPTTDEEKDSLIA 369

Query: 338  VAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFR 379
            + R                  W+ LQ  VN++FD +      D   GI Q+LEKKEGLFR
Sbjct: 370  IDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFR 429

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
            + +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING  
Sbjct: 430  KHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPN 489

Query: 440  IHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
            +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH+
Sbjct: 490  VHPGASMVINEDGSRTALSAVDMTQREAVAKQLLT-------PATGAPKPQGTKIVCRHV 542

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            ++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ E
Sbjct: 543  KNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSE 602

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
            + RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y    
Sbjct: 603  LGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREQYMELVYRG-- 660

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
                    T K G+  L+S          P+I KP  LWTGKQV++ +L +I        
Sbjct: 661  -------LTDKVGRVKLLS----------PSILKPFALWTGKQVVSTLLINI-------- 695

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEA 737
                  +P+D                N  GK   T K         KE  +  PG   ++
Sbjct: 696  ------IPEDHIPL------------NLSGKAKITGK------AWVKETPQSVPGFNPDS 731

Query: 738  EKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALS 795
                     + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L+
Sbjct: 732  ---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLA 782

Query: 796  RLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
            RLFT +LQ++ GFT GV+D+L+    + +R+  +  S   G +    AL L + A  D +
Sbjct: 783  RLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEV 842

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
            + K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M  
Sbjct: 843  RGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQMMVQ 899

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG+
Sbjct: 900  SGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGI 959

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
            +P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF Y
Sbjct: 960  KPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLY 1019

Query: 1035 GEDGVDVHQTSFIS--KFDALAA 1055
            GEDG+D+ +T F+   +F  LA+
Sbjct: 1020 GEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 80/114 (70%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL +PGE VGLLA+QS
Sbjct: 1159 VSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 1218

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP++  P+L  K
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMRVPVLNTK 1272


>gi|183232815|ref|XP_649386.2| DNA-directed RNA polymerase I largest subunit [Entamoeba histolytica
            HM-1:IMSS]
 gi|169801864|gb|EAL43998.2| DNA-directed RNA polymerase I largest subunit, putative [Entamoeba
            histolytica HM-1:IMSS]
          Length = 1570

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 382/984 (38%), Positives = 569/984 (57%), Gaps = 100/984 (10%)

Query: 244  PSDVKDIIEKLW---ENEFELCSFISDMQQQGFGKK-----AGHSIFFLGVVLVPPIKFR 295
            PS + +I+++ W   E + E+ S +   Q +G G+K       + +FF+ V+ +PP +FR
Sbjct: 270  PSYIMNILKEAWGHNEIQNEVLSRMYYSQMRG-GEKLDVIVPSYHMFFVEVLPIPPSRFR 328

Query: 296  LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWM--NLQQSVNVLFD 353
              +K GD + +HPQ++    +++++  L    V +   A     ++    +Q++ N+L  
Sbjct: 329  QLNKFGDLISDHPQSIYYRTIIESSNALK---VRREGTALDYPEKYFIDQMQKAYNLLIL 385

Query: 354  GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
              NA     M S    +LE K+GLFR  +MGKRVNYA R+VISPDP+L  N IG+P  FA
Sbjct: 386  TGNADEGISMKS----ILEHKKGLFRNNMMGKRVNYAARTVISPDPFLPTNTIGMPLPFA 441

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLS-TMRLPPNKKMRISIGRKLDT 472
            +RLT    V   N  +++ ++ING ++ PGA +  ++    + L  +        R+ + 
Sbjct: 442  MRLTIAVPVNERNYEEMKQAVINGPQVWPGALYIENEWGHKIVLLDDSNPYNKTKRQGEA 501

Query: 473  SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 532
             R  ++ P   +   F  K V+RH+ D D+VL NRQPTLHKP IM H V+VLK EKT+RM
Sbjct: 502  ERLLVIDP--KAPRSF--KTVFRHVIDNDMVLSNRQPTLHKPGIMGHYVKVLKIEKTIRM 557

Query: 533  HYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVS 592
            HYANC+T+NADFDGDEMN+H PQ   +R+E  NI  ++ QYV P NG PLR LIQDH++S
Sbjct: 558  HYANCNTFNADFDGDEMNLHLPQSMEARSEVMNIALSDEQYVVPKNGQPLRGLIQDHVIS 617

Query: 593  AALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL-LPAIWK 651
            + +LTK+DTF  ++E+CQ++Y++                  L    EQ  + + +PAI K
Sbjct: 618  SFMLTKRDTFFTKEEYCQIVYTA------------------LYGIYEQYSIRIPMPAILK 659

Query: 652  PEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSK 711
            P P WTGKQV+TA+L HI+        E                          K K+S 
Sbjct: 660  PIPKWTGKQVVTAILMHISTNHCTINFE-------------------------GKCKVS- 693

Query: 712  TNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF-- 769
            TN++++     KKE         K+ ++   K    ++   +I  + ++ G +DK Q   
Sbjct: 694  TNEINRGGYQTKKE-----RKLMKQKDEFTEKWSGANDSLCIIKDSQMLTGTLDKNQIGA 748

Query: 770  ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLH 829
            ++  L+H + ELY    +G  L+ LSRL T +LQ  G TC +DD ++  + + +R   L+
Sbjct: 749  SNQSLIHAIYELYNGKVSGMCLTLLSRLLTTYLQRIGHTCSLDDCMLKPEFDNKRTEMLN 808

Query: 830  GSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSS 889
             + E+ +    +  +LE  ++ D   +   +  A R          D  + +++N+ TS+
Sbjct: 809  KTNELARTAIAKHFKLEGHSKYD---IDLALANARRR--PQLSKELDDAVKTEVNECTSN 863

Query: 890  SVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKT 949
             VI E +  G L+    N ++LMTT+GAKGSKVN  QI+  LGQQELEG+RVP M +GKT
Sbjct: 864  -VIKECIPYGQLRAFPWNSLALMTTTGAKGSKVNHSQITCLLGQQELEGRRVPVMATGKT 922

Query: 950  LPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK 1009
            LPSF  +D + RAGGFI  RFLTG+ PQE++FHCMAGREGL+DTAVKT+ SGYLQRC+IK
Sbjct: 923  LPSFPRYDTSARAGGFIASRFLTGVPPQEFFFHCMAGREGLIDTAVKTASSGYLQRCVIK 982

Query: 1010 NLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFI-------SKFDALAARERGRG- 1061
             LE L + YDYSVR++DGSI++F YG+DG+DV ++ F+       + +DAL ++   +  
Sbjct: 983  MLESLHVEYDYSVRESDGSIIEFMYGDDGIDVMKSGFLNNIDFWANNYDALVSKYETKAI 1042

Query: 1062 -----RGRNKFCDKGSHTFVMGRNQE---MIYKKCSGQLDASNAYIMELPDALKDNAEKF 1113
                 +G ++ C             E    IY   +     S  Y   + D +K++    
Sbjct: 1043 LSKFKKGFSRACKLQKKCLRHPEKYEPVQSIYSPSNNLAAVSEKYYKLINDYIKEDKR-- 1100

Query: 1114 ADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGE 1173
              +F S ++  + F  ++  K+  SL  PGEPVG+LA QS+GEPSTQMTLNTFHLAGRG+
Sbjct: 1101 -GEFKSGKLDPETFKVMMMLKYNKSLINPGEPVGVLAGQSIGEPSTQMTLNTFHLAGRGD 1159

Query: 1174 MNVTLGIPRLQEILTIASKDIKTP 1197
            +NVTLG+PR++E++  A K+I TP
Sbjct: 1160 VNVTLGMPRIKELVMFAKKEIATP 1183



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 42/75 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG  +  CPGHFGH +L  P+Y PLL   L  LL+ IC  CH  KAS++ +     +
Sbjct: 69  CPTCGLTEEGCPGHFGHFELEEPMYQPLLLTELLKLLRSICMKCHSLKASKQVILGAAIE 128

Query: 61  LELIIKGDIIAAKSL 75
            E + K DI  A  +
Sbjct: 129 FERLAKNDIEGAMDI 143


>gi|449708432|gb|EMD47895.1| DNA-directed RNA polymerase I subunit RPA1, putative [Entamoeba
            histolytica KU27]
          Length = 1570

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 382/984 (38%), Positives = 569/984 (57%), Gaps = 100/984 (10%)

Query: 244  PSDVKDIIEKLW---ENEFELCSFISDMQQQGFGKK-----AGHSIFFLGVVLVPPIKFR 295
            PS + +I+++ W   E + E+ S +   Q +G G+K       + +FF+ V+ +PP +FR
Sbjct: 270  PSYIMNILKEAWGHNEIQNEVLSRMYYSQMRG-GEKLDVIVPSYHMFFVEVLPIPPSRFR 328

Query: 296  LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWM--NLQQSVNVLFD 353
              +K GD + +HPQ++    +++++  L    V +   A     ++    +Q++ N+L  
Sbjct: 329  QLNKFGDLISDHPQSIYYRTIIESSNALK---VRREGTALDYPEKYFIDQMQKAYNLLIL 385

Query: 354  GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
              NA     M S    +LE K+GLFR  +MGKRVNYA R+VISPDP+L  N IG+P  FA
Sbjct: 386  TGNADEGISMKS----ILEHKKGLFRNNMMGKRVNYAARTVISPDPFLPTNTIGMPLPFA 441

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLS-TMRLPPNKKMRISIGRKLDT 472
            +RLT    V   N  +++ ++ING ++ PGA +  ++    + L  +        R+ + 
Sbjct: 442  MRLTIAVPVNERNYEEMKQAVINGPQVWPGALYIENEWGHKIVLLDDSNPYNKTKRQGEA 501

Query: 473  SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 532
             R  ++ P   +   F  K V+RH+ D D+VL NRQPTLHKP IM H V+VLK EKT+RM
Sbjct: 502  ERLLVIDP--KAPRSF--KTVFRHVIDNDMVLSNRQPTLHKPGIMGHYVKVLKIEKTIRM 557

Query: 533  HYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVS 592
            HYANC+T+NADFDGDEMN+H PQ   +R+E  NI  ++ QYV P NG PLR LIQDH++S
Sbjct: 558  HYANCNTFNADFDGDEMNLHLPQSMEARSEVMNIALSDEQYVVPKNGQPLRGLIQDHVIS 617

Query: 593  AALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL-LPAIWK 651
            + +LTK+DTF  ++E+CQ++Y++                  L    EQ  + + +PAI K
Sbjct: 618  SFMLTKRDTFFTKEEYCQIVYTA------------------LYGIYEQYSIRIPMPAILK 659

Query: 652  PEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSK 711
            P P WTGKQV+TA+L HI+        E                          K K+S 
Sbjct: 660  PIPKWTGKQVVTAILMHISTNHCTINFE-------------------------GKCKVS- 693

Query: 712  TNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF-- 769
            TN++++     KKE         K+ ++   K    ++   +I  + ++ G +DK Q   
Sbjct: 694  TNEINRGGYQTKKE-----RKLMKQKDEFTEKWSGANDSLCIIKDSQMLTGTLDKNQIGA 748

Query: 770  ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLH 829
            ++  L+H + ELY    +G  L+ LSRL T +LQ  G TC +DD ++  + + +R   L+
Sbjct: 749  SNQSLIHAIYELYNGKVSGMCLTLLSRLLTTYLQRIGHTCSLDDCMLKPEFDNKRTEMLN 808

Query: 830  GSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSS 889
             + E+ +    +  +LE  ++ D   +   +  A R          D  + +++N+ TS+
Sbjct: 809  KTNELARTAIAKHFKLEGHSKYD---IDLALANARRR--PQLSKELDDAVKTEVNECTSN 863

Query: 890  SVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKT 949
             VI E +  G L+    N ++LMTT+GAKGSKVN  QI+  LGQQELEG+RVP M +GKT
Sbjct: 864  -VIKECIPYGQLRAFPWNSLALMTTTGAKGSKVNHSQITCLLGQQELEGRRVPVMATGKT 922

Query: 950  LPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK 1009
            LPSF  +D + RAGGFI  RFLTG+ PQE++FHCMAGREGL+DTAVKT+ SGYLQRC+IK
Sbjct: 923  LPSFPRYDTSARAGGFIASRFLTGVPPQEFFFHCMAGREGLIDTAVKTASSGYLQRCVIK 982

Query: 1010 NLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFI-------SKFDALAARERGRG- 1061
             LE L + YDYSVR++DGSI++F YG+DG+DV ++ F+       + +DAL ++   +  
Sbjct: 983  MLESLHVEYDYSVRESDGSIIEFMYGDDGIDVMKSGFLNNIDFWANNYDALVSKYETKAI 1042

Query: 1062 -----RGRNKFCDKGSHTFVMGRNQE---MIYKKCSGQLDASNAYIMELPDALKDNAEKF 1113
                 +G ++ C             E    IY   +     S  Y   + D +K++    
Sbjct: 1043 LSKFKKGFSRACKLQKKCLRHPEKYEPVQSIYSPSNNLAAVSEKYYKLINDYIKEDKR-- 1100

Query: 1114 ADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGE 1173
              +F S ++  + F  ++  K+  SL  PGEPVG+LA QS+GEPSTQMTLNTFHLAGRG+
Sbjct: 1101 -GEFKSGKLDPETFKVMMMLKYNKSLINPGEPVGVLAGQSIGEPSTQMTLNTFHLAGRGD 1159

Query: 1174 MNVTLGIPRLQEILTIASKDIKTP 1197
            +NVTLG+PR++E++  A K+I TP
Sbjct: 1160 VNVTLGMPRIKELVMFAKKEIATP 1183



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 42/75 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG  +  CPGHFGH +L  P+Y PLL   L  LL+ IC  CH  KAS++ +     +
Sbjct: 69  CPTCGLTEEGCPGHFGHFELEEPMYQPLLLTELLKLLRSICMKCHSLKASKQVILGAAIE 128

Query: 61  LELIIKGDIIAAKSL 75
            E + K DI  A  +
Sbjct: 129 FERLAKNDIEGAMDI 143


>gi|402891470|ref|XP_003908969.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Papio anubis]
          Length = 1720

 Score =  617 bits (1592), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 407/1104 (36%), Positives = 572/1104 (51%), Gaps = 174/1104 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P  S++  +                       
Sbjct: 124  LRVLEVGALQAVYELERILNRFLEENADPSASEIQEE----------------------- 160

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
              L+   A++     L  +     N C++K+   +   F   HMN    PH         
Sbjct: 161  --LEQYTAEIVQNNLLGSQGAHVKNVCESKSKLTA--VFWKAHMNAKRCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L                TFP      A   QK S   P G ++ 
Sbjct: 208  -CKTGRSVVRKEHNSKLTI--------------TFPAMVHRTA--GQKDSE--PLGIEEA 248

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L P+  ++ +  LW+NE F L    S M   G   +   S+FFL  ++VPP +
Sbjct: 249  QMGKRGYLTPTSAREHLFALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSR 308

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN--AYVNQ------------PDNAK---V 336
            +R  S+ GD +  + QTV L  V++  + +    A + Q            PD  K   +
Sbjct: 309  YRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVAAPPPDEEKDSLI 368

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             + R                  W+ LQ  VN++FD +      D   GI Q+LEKKEGLF
Sbjct: 369  AIDRSFLSTLPGQSFIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLF 428

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 429  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 488

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 489  NVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLT-------PATGAPKPQGTKIVCRH 541

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 542  VKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 601

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y   
Sbjct: 602  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREQYMELVYR-- 659

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L            P+I KP PLWTGKQV++ +L +I       
Sbjct: 660  -------GLTDKVGRVKLFP----------PSILKPFPLWTGKQVLSTLLINI------- 695

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D                N  GK   T K         KE     PG   +
Sbjct: 696  -------IPEDHIPL------------NLSGKAKITGK------AWVKETPRSVPGFNPD 730

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
            +         + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L
Sbjct: 731  S---------MCESQVVIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCL 781

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT GV+D+L+    + +R+  +  S   G R    AL L +    D 
Sbjct: 782  ARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPRAVRAALNLPEATSYDE 841

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            ++ K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 842  VRGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQMMV 898

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 899  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 958

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            +RP E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF 
Sbjct: 959  IRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFL 1018

Query: 1034 YGEDGVDVHQTSFIS--KFDALAA 1055
            YGEDG+D+ +T F+   +F  LA+
Sbjct: 1019 YGEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  116 bits (291), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 81/114 (71%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL +PGE VGLLA+QS
Sbjct: 1159 VSETFETKVDDYSQEWAAQAEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 1218

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L  K
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTK 1272


>gi|4096591|gb|AAC99959.1| DNA-directed RNA polymerase I, largest subunit [Homo sapiens]
          Length = 1717

 Score =  617 bits (1592), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 402/1103 (36%), Positives = 572/1103 (51%), Gaps = 172/1103 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P  S++  +                     E 
Sbjct: 124  LRVLEVGALQAVYELERILSRFLEENADPSASEIREE--------------------LEQ 163

Query: 118  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNG--MPHADIRANLIRG 175
             + +  +  L   Q   ++      C++K+  I+   F   HMN    PH          
Sbjct: 164  YTTEIVQNNLLGSQGAHVKNV----CESKSKLIA--LFWKAHMNAKRCPH---------- 207

Query: 176  CNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQK 235
            C  G +    E    L                TFP      A   QK S   P G ++ +
Sbjct: 208  CKTGRSVVRKEHNSKLTI--------------TFPAMVHRTA--GQKDSE--PLGIEEAQ 249

Query: 236  DLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKF 294
                G L P+  ++ +  LW+NE F L    S M   G   +   S+FFL  ++VPP + 
Sbjct: 250  IGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRS 309

Query: 295  RLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKVI 337
            R  S+ GD +  + QTV L  V++  + +                 A    ++  ++ + 
Sbjct: 310  RPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVATPTTDEEKDSLIA 369

Query: 338  VAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFR 379
            + R                  W+ LQ  VN++FD +     RD   GI Q+LEKKEGLFR
Sbjct: 370  IDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMRDKYPGIRQILEKKEGLFR 429

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
            + +MGKRV+   RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING  
Sbjct: 430  KHMMGKRVDSTARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPN 489

Query: 440  IHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
            +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH+
Sbjct: 490  VHPGASMVINEDGSRTALSAVDMTQREAVAKQLLT-------PATGAPKPQGTKIVCRHV 542

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            ++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ E
Sbjct: 543  KNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSE 602

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
            + RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+ + +L+Y    
Sbjct: 603  LGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYR--- 659

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
                    T K G+  L+S          P+I KP PLWTGKQV++ +L +I        
Sbjct: 660  ------GLTDKVGRVKLLS----------PSILKPFPLWTGKQVVSTLLINI-------- 695

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEA 737
                  +P+D                N  GK   T K         KE     PG   ++
Sbjct: 696  ------IPEDHIPL------------NLSGKAKITGK------AWVKETPRSVPGFNPDS 731

Query: 738  EKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALS 795
                     + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L+
Sbjct: 732  ---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLA 782

Query: 796  RLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
            RLFT +LQ++ GFT GV+D+L+   ++ +R+  +  S   G +    AL L + A  D +
Sbjct: 783  RLFTAYLQLYRGFTLGVEDILVKPKRDVKRQRIIEESTHCGPQAVRAALNLPEAASYDEV 842

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
            + K   + A  G         D+K   ++N H S+ +    +  GL +   +N + LM  
Sbjct: 843  RGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENTLQLMVQ 899

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS VN  QIS  LGQ ELEG+  P M SGK+LP F P+++ PRAGGF+  RFLTG+
Sbjct: 900  SGAKGSTVNTMQISCLLGQIELEGRSTPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGI 959

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
            +P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF Y
Sbjct: 960  KPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLY 1019

Query: 1035 GEDGVDVHQTSFIS--KFDALAA 1055
            GEDG+D+ +T F+   +F  LA+
Sbjct: 1020 GEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 81/114 (71%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL +PGE VGLLA+QS
Sbjct: 1160 VSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 1219

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L  K
Sbjct: 1220 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTK 1273


>gi|355762289|gb|EHH61926.1| hypothetical protein EGM_20072 [Macaca fascicularis]
          Length = 1720

 Score =  617 bits (1590), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 406/1104 (36%), Positives = 572/1104 (51%), Gaps = 174/1104 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P  S++  +                       
Sbjct: 124  LRVLEVGALQAVYELERILNRFLEENADPSASEIQEE----------------------- 160

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
              L+   A++     L  +     N C++K+   +   F   HMN    PH         
Sbjct: 161  --LEQYTAEIVQNNLLGSQGAHVKNVCESKSKLTA--VFWKAHMNAKRCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L                TFP      A   QK S   P G ++ 
Sbjct: 208  -CKTGRSVVRKEHNSKLTI--------------TFPAMVHRTA--GQKDSE--PLGIEEA 248

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L P+  ++ +  LW+NE F L    S M   G   +   S+FFL  ++VPP +
Sbjct: 249  QMGKRGYLTPTSAREHLFALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSR 308

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN--AYVNQ------------PDNAK---V 336
            +R  S+ GD +  + QTV L  V++  + +    A + Q            PD  K   +
Sbjct: 309  YRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVAAPPPDEEKDSLI 368

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             + R                  W+ LQ  VN++FD +      D   GI Q+LEKKEGLF
Sbjct: 369  AIDRSFLSTLPGQSFIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLF 428

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 429  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 488

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 489  NVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLT-------PATGAPKPQGTKIVCRH 541

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 542  VKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 601

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y   
Sbjct: 602  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREQYMELVYR-- 659

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L            P+I KP PLWTGKQV++ +L +I       
Sbjct: 660  -------GLTDKVGRVKLFP----------PSILKPFPLWTGKQVLSTLLINI------- 695

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D                N  GK   T K         KE     PG   +
Sbjct: 696  -------IPEDHIPL------------NLSGKAKITGK------AWVKETPRSVPGFNPD 730

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
            +         + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L
Sbjct: 731  S---------MCESQVVIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCL 781

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT GV+D+L+    + +R+  +  S   G R    AL L +    D 
Sbjct: 782  ARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPRAVRAALNLPEATSYDE 841

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            ++ K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 842  VRGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQMMV 898

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 899  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 958

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            ++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF 
Sbjct: 959  IKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFL 1018

Query: 1034 YGEDGVDVHQTSFIS--KFDALAA 1055
            YGEDG+D+ +T F+   +F  LA+
Sbjct: 1019 YGEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 81/114 (71%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL +PGE VGLLA+QS
Sbjct: 1159 VSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 1218

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L  K
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTK 1272


>gi|355565864|gb|EHH22293.1| hypothetical protein EGK_05529 [Macaca mulatta]
          Length = 1720

 Score =  617 bits (1590), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 406/1104 (36%), Positives = 572/1104 (51%), Gaps = 174/1104 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P  S++  +                       
Sbjct: 124  LRVLEVGALQAVYELERILNRFLEENADPSASEIQEE----------------------- 160

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
              L+   A++     L  +     N C++K+   +   F   HMN    PH         
Sbjct: 161  --LEQYTAEIVQNNLLGSQGAHVKNVCESKSKLTA--VFWKAHMNAKRCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L                TFP      A   QK S   P G ++ 
Sbjct: 208  -CKTGRSVVRKEHNSKLTI--------------TFPAMVHRTA--GQKDSE--PLGIEEA 248

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L P+  ++ +  LW+NE F L    S M   G   +   S+FFL  ++VPP +
Sbjct: 249  QMGKRGYLTPTSAREHLFALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSR 308

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN--AYVNQ------------PDNAK---V 336
            +R  S+ GD +  + QTV L  V++  + +    A + Q            PD  K   +
Sbjct: 309  YRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVAAPPPDEEKDSLI 368

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             + R                  W+ LQ  VN++FD +      D   GI Q+LEKKEGLF
Sbjct: 369  AIDRSFLSTLPGQSFIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLF 428

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 429  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 488

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 489  NVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLT-------PATGAPKPQGTKIVCRH 541

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 542  VKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 601

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y   
Sbjct: 602  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREQYMELVYR-- 659

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L            P+I KP PLWTGKQV++ +L +I       
Sbjct: 660  -------GLTDKVGRVKLFP----------PSILKPFPLWTGKQVLSTLLINI------- 695

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D                N  GK   T K         KE     PG   +
Sbjct: 696  -------IPEDHIPL------------NLSGKAKITGK------AWVKETPRSVPGFNPD 730

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
            +         + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L
Sbjct: 731  S---------MCESQVVIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCL 781

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT GV+D+L+    + +R+  +  S   G R    AL L +    D 
Sbjct: 782  ARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPRAVRAALNLPEATSYDE 841

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            ++ K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 842  VRGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQMMV 898

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 899  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 958

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            ++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF 
Sbjct: 959  IKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFL 1018

Query: 1034 YGEDGVDVHQTSFIS--KFDALAA 1055
            YGEDG+D+ +T F+   +F  LA+
Sbjct: 1019 YGEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 81/114 (71%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL +PGE VGLLA+QS
Sbjct: 1159 VSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 1218

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L  K
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTK 1272


>gi|116204821|ref|XP_001228221.1| hypothetical protein CHGG_10294 [Chaetomium globosum CBS 148.51]
 gi|88176422|gb|EAQ83890.1| hypothetical protein CHGG_10294 [Chaetomium globosum CBS 148.51]
          Length = 1475

 Score =  616 bits (1588), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 396/990 (40%), Positives = 532/990 (53%), Gaps = 173/990 (17%)

Query: 269  QQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQT------VLLSKVLQANIY 322
            Q +G  K     +FF+  +LVPP ++R  ++ GDS +   Q       +L S  L A I 
Sbjct: 203  QARGNSKPLSADMFFVSTLLVPPNRYRPEARMGDSQISEAQQNSLYKLILRSASLVAQIS 262

Query: 323  LANAYVNQPD---------NAKVIVARWMNLQQSVNVLFDG-----KNAAGQRDMASGIC 368
               +   + D         +   +   W  LQ +VN L D      + AA +R+   GI 
Sbjct: 263  REISGQTKEDMMDESRRTRDMSSLYQAWTELQDAVNSLIDRDKNPVQGAAAKRN-EEGIK 321

Query: 369  QLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVV 428
            Q LEKKEGLFR+ +MGKRVN+A RSVISPDP +  NEIG+PP FA +LTYPE VT  N  
Sbjct: 322  QKLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFK 381

Query: 429  KLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM--RISIGRKLDTSRGAIVQPGKDSDN 486
             L+ ++ING +  PGA    ++   +     K +  R+S+  +L    G          N
Sbjct: 382  DLQQAVINGVDKWPGAAAIENENGQIVNLRAKSLEDRVSLANQLLAPTG----------N 431

Query: 487  EFEG---KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNAD 543
             F G   K V+RHL +GDVVL+NRQPTLHKPSIM H VRVL GEKT+RMHYANC+TYNAD
Sbjct: 432  NFSGQRNKKVHRHLTNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNAD 491

Query: 544  FDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFL 603
            FDGDEMN+HFP  EV  AEA  + + ++QY+  + G PLR                    
Sbjct: 492  FDGDEMNMHFPLTEVRGAEALQLSDTDHQYISGTAGTPLRE------------------- 532

Query: 604  NRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVIT 663
                               G  TG           + E++P  PAI KP P WTGKQVIT
Sbjct: 533  ------------------SGHITG----------DKIELVP--PAIIKPAPRWTGKQVIT 562

Query: 664  AVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKK 723
             +L +I   RP                              D G L        + S K 
Sbjct: 563  TILKNI---RPA-----------------------------DCGDL------WMNGSAKV 584

Query: 724  KEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQEL 781
            K    G+  EE +               ++    + + G++DK+Q   +D G VH V E+
Sbjct: 585  KSRSWGEDSEEGQ---------------VMFRDGEFISGILDKSQLGPSDGGFVHAVHEV 629

Query: 782  YGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLE 841
            YG + AG LLS++ RL T +L M  FTCG+DDL +    E++RK  +  +  IG  V  +
Sbjct: 630  YGPSVAGKLLSSIGRLLTRYLAMVAFTCGMDDLRMTPQGEKDRKETIKAAVNIGIEVAAK 689

Query: 842  ALEL--EDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEG 899
             + L  +   + DP+ L+  +E+  R   D      ++ +TSQ     S+ +    L  G
Sbjct: 690  YVSLGEQKPTKDDPLLLE-RLEEVHR--DDKKQEGLEL-LTSQECAKLSTEITRLCLPAG 745

Query: 900  LLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWA 959
            L K   KN +  MTTSGAKGS VN   IS +LGQQ LEG+RVP MVSGKTLPSF P+D  
Sbjct: 746  LEKQFPKNHMQSMTTSGAKGSPVNANLISCNLGQQVLEGRRVPVMVSGKTLPSFKPYDTD 805

Query: 960  PRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYD 1019
             RAGG+I++RFLTG+RPQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E L++SYD
Sbjct: 806  VRAGGYIVNRFLTGIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRVSYD 865

Query: 1020 YSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGR 1079
             SVRD+DG++VQF +GEDG+D+ +  +++ F+    R       + ++ + G+      R
Sbjct: 866  SSVRDSDGTVVQFLFGEDGIDIGKQKYLNDFE-FVLRNLDSQLPQIRYHESGTQALFEHR 924

Query: 1080 NQEMIYKK--------------CSGQLD-------ASNAYIMELPDALKDN-----AEKF 1113
            ++ M   K               S ++D        S  +  ++ D +K N      EK 
Sbjct: 925  DEIMKRMKSAIRSSSTRNPLDPVSSEVDPTAFAFATSEKFYSKMMDYVKTNKDGLIKEKK 984

Query: 1114 ADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGE 1173
                   ++A++   K++  K++ SL +PGE VG++A QSVGEPSTQMTLNTFHLAG   
Sbjct: 985  GSDSQKGQIARKTAEKILAAKYIRSLVEPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHSA 1044

Query: 1174 MNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
             NVTLGIPRL+EIL  AS  I TP +T  L
Sbjct: 1045 KNVTLGIPRLREILMTASSKISTPSMTLVL 1074



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 6/98 (6%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEK--C- 57
           C TC   Q  CPGH GHI+L VPVY+P+  +  Y LL+  C +CH F+  R E+ K  C 
Sbjct: 62  CLTCNLNQAQCPGHPGHIELPVPVYHPVFMDQAYRLLRAQCVYCHRFRLPRHEIHKYTCM 121

Query: 58  --VRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSN 93
             V ++ LI +  +I + S+  DL  +  N   SDV N
Sbjct: 122 FRVVQVGLIHEAHMIESFSVS-DLGEQLRNLTLSDVPN 158


>gi|380811490|gb|AFE77620.1| DNA-directed RNA polymerase I subunit RPA1 [Macaca mulatta]
          Length = 1720

 Score =  616 bits (1588), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 406/1104 (36%), Positives = 572/1104 (51%), Gaps = 174/1104 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHLLTCPRAVIHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P  S++  +                       
Sbjct: 124  LRVLEVGALQAVYELERILNRFLEENADPSASEIQEE----------------------- 160

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
              L+   A++     L  +     N C++K+   +   F   HMN    PH         
Sbjct: 161  --LEQYTAEIVQNNLLGSQGAHVKNVCESKSKLTA--VFWKAHMNAKRCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L                TFP      A   QK S   P G ++ 
Sbjct: 208  -CKTGRSVVRKEHNSKLTI--------------TFPAMVHRTA--GQKDSE--PLGIEEA 248

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L P+  ++ +  LW+NE F L    S M   G   +   S+FFL  ++VPP +
Sbjct: 249  QMGKRGYLTPTSAREHLFALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSR 308

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN--AYVNQ------------PDNAK---V 336
            +R  S+ GD +  + QTV L  V++  + +    A + Q            PD  K   +
Sbjct: 309  YRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVAAPPPDEEKDSLI 368

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             + R                  W+ LQ  VN++FD +      D   GI Q+LEKKEGLF
Sbjct: 369  AIDRSFLSTLPGQSFIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLF 428

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 429  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 488

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 489  NVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLT-------PATGAPKPQGTKIVCRH 541

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 542  VKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 601

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y   
Sbjct: 602  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREQYMELVYR-- 659

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L            P+I KP PLWTGKQV++ +L +I       
Sbjct: 660  -------GLTDKVGRVKLFP----------PSILKPFPLWTGKQVLSTLLINI------- 695

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D                N  GK   T K         KE     PG   +
Sbjct: 696  -------IPEDHIPL------------NLSGKAKITGK------AWVKETPRSVPGFNPD 730

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
            +         + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L
Sbjct: 731  S---------MCESQVVIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCL 781

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT GV+D+L+    + +R+  +  S   G R    AL L +    D 
Sbjct: 782  ARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPRAVRAALNLPEATSYDE 841

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            ++ K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 842  VRGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQMMV 898

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 899  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 958

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            ++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF 
Sbjct: 959  IKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFL 1018

Query: 1034 YGEDGVDVHQTSFIS--KFDALAA 1055
            YGEDG+D+ +T F+   +F  LA+
Sbjct: 1019 YGEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 81/114 (71%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL +PGE VGLLA+QS
Sbjct: 1159 VSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 1218

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L  K
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTK 1272


>gi|149036393|gb|EDL91011.1| RNA polymerase 1-4 [Rattus norvegicus]
          Length = 1716

 Score =  616 bits (1588), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 404/1107 (36%), Positives = 579/1107 (52%), Gaps = 173/1107 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHIDL + VYNPLLF+ LY LL+  C  CH     R  +   V +
Sbjct: 64   CSTCVQDFNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAIHLLVCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L+++  G + A   L+  L     E+S+P   ++  +                    +E+
Sbjct: 124  LKVLDVGALQAVYELERILSRFLEETSDPSAFEIQEEL-------------------EEY 164

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
            TS      K+     L  +     N C++++  ++   F   HM     PH     +++R
Sbjct: 165  TS------KILQNNLLGSQGAHVKNVCESRSKLVAH--FWKTHMAAKRCPHCKTGRSVVR 216

Query: 175  ---GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGF 231
                  L  T+     +K      D + PE                     G+ A P G 
Sbjct: 217  KEHNSKLTITYPAMVHKK--SGQKDAELPE---------------------GAPAAP-GI 252

Query: 232  KKQKDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVP 290
             + +    G L PS  ++ +  +W+NE F L    S +   G       S+FFL  ++VP
Sbjct: 253  DEAQMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVP 312

Query: 291  PIKFRLPSKGGDSVMEHPQTVLLSKVLQANIY-----------------LANAYVNQPDN 333
            P ++R  ++ GD +  + QTV L  V++  +                  +    +++ ++
Sbjct: 313  PSRYRPINRLGDQMFTNGQTVNLQAVMKDAVLIRKLLAVMAQEQKLPCEMTEITIDKEND 372

Query: 334  AKVIVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKE 375
            +   + R                  W+ LQ  VN++FD        +   GI Q+LEKKE
Sbjct: 373  SSGAIDRSFLSLLPGQSLTDKLYNIWIRLQSHVNIVFDSDMDKLMLEKYPGIRQILEKKE 432

Query: 376  GLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSII 435
            GLFR+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++I
Sbjct: 433  GLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVI 492

Query: 436  NGAEIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMV 493
            NG  +HPGA+  +  D   T     +   R ++ ++L T    I +P          K+V
Sbjct: 493  NGPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTPSTGIPKPQG-------AKVV 545

Query: 494  YRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHF 553
             RH+++GD++L+NRQPTLH+PSI AH   +L  EK LR+HYANC  YNADFDGDEMN HF
Sbjct: 546  CRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMNAHF 605

Query: 554  PQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLY 613
            PQ E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y
Sbjct: 606  PQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVY 665

Query: 614  SSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGR 673
                        T K G+  L            PAI KP PLWTGKQV++ +L +I    
Sbjct: 666  RG---------LTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI---- 702

Query: 674  PPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGE 733
                      +P+D+                     +  N   K K G K  V E KP  
Sbjct: 703  ----------IPEDY---------------------TPLNLTGKAKIGSKAWVKE-KPRP 730

Query: 734  EKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLL 791
              + + +      + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L
Sbjct: 731  VPDFDPDS-----MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVL 785

Query: 792  SALSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAE 850
            + L+RLFT +LQ++ GFT GV+D+L+  + +  R+  +  S + G R    AL L + A 
Sbjct: 786  TCLARLFTAYLQLYRGFTLGVEDILVKPNADVMRQRIIEESTQCGPRAVRAALNLPEAAS 845

Query: 851  IDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS 910
             D I+ K   + A  G         DMK   ++N H S+ +    +  GL +   +N + 
Sbjct: 846  CDEIQGK--WQDAHLGKDQRDFNMIDMKFKEEVN-HYSNEINKACMPFGLHRQFPENNLQ 902

Query: 911  LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRF 970
            +M  SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RF
Sbjct: 903  MMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRF 962

Query: 971  LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIV 1030
            LTG+RP E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L I YD +VRD+DGS+V
Sbjct: 963  LTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVV 1022

Query: 1031 QFCYGEDGVDVHQTSFIS--KFDALAA 1055
            QF YGEDG+D+ +T F+   +F  LA+
Sbjct: 1023 QFLYGEDGLDIPKTQFLQPKQFPFLAS 1049



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 69/88 (78%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            +E++      L++ K+  SL  PGE VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLG
Sbjct: 1192 SELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLG 1251

Query: 1180 IPRLQEILTIASKDIKTPVITCPLLVGK 1207
            IPRL+EIL +AS +IKTP+++ P+   K
Sbjct: 1252 IPRLREILMVASANIKTPMMSVPVFNTK 1279


>gi|383417301|gb|AFH31864.1| DNA-directed RNA polymerase I subunit RPA1 [Macaca mulatta]
          Length = 1720

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 406/1104 (36%), Positives = 572/1104 (51%), Gaps = 174/1104 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHLLTCPRAVIHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P  S++  +                       
Sbjct: 124  LRVLEVGALQAVYELERILNRFLEENADPSASEIQEE----------------------- 160

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
              L+   A++     L  +     N C++K+   +   F   HMN    PH         
Sbjct: 161  --LEQYTAEIVQNNLLGSQGAHVKNVCESKSKLTA--VFWKAHMNAKRCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L                TFP      A   QK S   P G ++ 
Sbjct: 208  -CKTGRSVVRKEHNSKLTI--------------TFPAMVHRTA--GQKDSE--PLGIEEA 248

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L P+  ++ +  LW+NE F L    S M   G   +   S+FFL  ++VPP +
Sbjct: 249  QMGKRGYLTPTSAREHLFALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSR 308

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN--AYVNQ------------PDNAK---V 336
            +R  S+ GD +  + QTV L  V++  + +    A + Q            PD  K   +
Sbjct: 309  YRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVAAPPPDEEKDSLI 368

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             + R                  W+ LQ  VN++FD +      D   GI Q+LEKKEGLF
Sbjct: 369  AIDRSFLSTLPGQSFIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLF 428

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 429  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 488

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 489  NVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLT-------PATGAPKPQGTKIVCRH 541

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 542  VKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 601

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y   
Sbjct: 602  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREQYMELVYR-- 659

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L            P+I KP PLWTGKQV++ +L +I       
Sbjct: 660  -------GLTDKVGRVKLFP----------PSILKPFPLWTGKQVLSTLLINI------- 695

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D                N  GK   T K         KE     PG   +
Sbjct: 696  -------IPEDHIPL------------NLSGKAKITGK------AWVKETPRSVPGFNPD 730

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
            +         + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L
Sbjct: 731  S---------MCESQVVIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCL 781

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT GV+D+L+    + +R+  +  S   G R    AL L +    D 
Sbjct: 782  ARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPRAVRAALNLPEATSYDE 841

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            ++ K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 842  VRGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQMMV 898

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 899  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 958

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            ++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF 
Sbjct: 959  IKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFL 1018

Query: 1034 YGEDGVDVHQTSFIS--KFDALAA 1055
            YGEDG+D+ +T F+   +F  LA+
Sbjct: 1019 YGEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 81/114 (71%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL +PGE VGLLA+QS
Sbjct: 1159 VSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 1218

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L  K
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTK 1272


>gi|296223364|ref|XP_002757589.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform 1
            [Callithrix jacchus]
          Length = 1720

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 403/1104 (36%), Positives = 575/1104 (52%), Gaps = 174/1104 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCAQDFNNCSGHLGHIELPLMVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P  S++  +                     E 
Sbjct: 124  LRVLEVGALQAVYELERILNRFLEENADPSASEIQEE--------------------LEQ 163

Query: 118  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGW-IHMNG--MPHADIRANLIR 174
             + +  +  L   Q   ++      C++++  I+   F W  HMN    PH         
Sbjct: 164  YTTEIVQNNLLGSQGSHVKNV----CESRSKIIA---FFWKTHMNPKRCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L                TFP T    A   QK S   P G ++ 
Sbjct: 208  -CKTGRSVVRKEHNSKLTI--------------TFPATVHRTA--GQKDSE--PLGIEEA 248

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L P+  ++ +  LW+NE F L    S +   G   +   S+FFL  ++VPP +
Sbjct: 249  QMGKRGYLTPTSAREHLFALWKNEGFFLNYLFSGVDNDGMESRFNPSVFFLDFLVVPPSR 308

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKV 336
            +R  S+ GD +  + QTV L  V++  + +                 A    ++  ++ +
Sbjct: 309  YRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPGDVAVPLTDEGKDSLI 368

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             + R                  W+ LQ  VN++FD +      D   GI Q+LEKKEGLF
Sbjct: 369  TIDRAFLSTIPGQSFIDKLYNIWIRLQSHVNIVFDSEMDKLMTDKYPGIRQILEKKEGLF 428

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 429  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 488

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 489  NVHPGASMVINEDGSRTALSAVDVSQREAVAKQLLT-------PAMGAPKPQGTKIVCRH 541

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 542  VKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 601

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y   
Sbjct: 602  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREQYMELVYRG- 660

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L            P+I KP PLWTGKQV++ +L +I       
Sbjct: 661  --------LTDKLGRVKLFP----------PSILKPFPLWTGKQVVSTLLINI------- 695

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D                N  GK   T K         KE  +  PG   +
Sbjct: 696  -------IPEDHIPL------------NLTGKAKITGK------AWVKETPQSVPGFNPD 730

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
            +         + E +++I + +L+ GV+DKA +    YGLVH   E+YG   +G +L+ L
Sbjct: 731  S---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGEISGKVLTCL 781

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT GV+D+L+    + +R+  +  S   G R    AL L + A  D 
Sbjct: 782  ARLFTAYLQLYRGFTLGVEDILVKLKADVKRQQIIEESIHCGLRAVRAALNLPEAASYDE 841

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            ++ K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 842  VREK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQMMV 898

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 899  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 958

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            ++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF 
Sbjct: 959  IKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFL 1018

Query: 1034 YGEDGVDVHQTSFIS--KFDALAA 1055
            YGEDG+DV +T F+   +F  LA+
Sbjct: 1019 YGEDGLDVPKTQFLQPKQFPFLAS 1042



 Score =  116 bits (290), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 81/114 (71%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL +PGE VGLLA+QS
Sbjct: 1159 VSETFETKVDDYSQEWAAQTERSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 1218

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L  K
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTK 1272


>gi|326919609|ref|XP_003206072.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Meleagris
            gallopavo]
          Length = 1646

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 386/1096 (35%), Positives = 559/1096 (51%), Gaps = 178/1096 (16%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    CPGHFGHI+L + VYNPL F+ LY L++  C  CH    +R  V   + +
Sbjct: 64   CATCMQNFSNCPGHFGHIELPLTVYNPLFFDKLYLLIRGSCLNCHMLTCTRAVVHLLLSQ 123

Query: 61   LELIIKGDIIAAKSLD------LDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKP 114
            L+++  G + A   L+      L+  ++++  E  +  N+    ++  +   D   N+K 
Sbjct: 124  LKVLEHGLLHAVHDLEVILNRFLEQSADATALEIEEELNRHVDEILQSQELSDQCSNVK- 182

Query: 115  QEWTSLQFAEAKLALL-QFLKIETT--KCGNCKAKNPRISKPTFGWIHMNGMPHADIRAN 171
                     E +  L+ QF K   T  KC NCK+                       R +
Sbjct: 183  ------NVCECRNKLISQFWKAHMTSKKCPNCKS-----------------------RRS 213

Query: 172  LIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGF 231
            L+R              K+  +   V  P T        G  D             P   
Sbjct: 214  LVR--------------KEHNSKLTVTYPSTVFHKAGVEGVTDE------------PVAI 247

Query: 232  KKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPP 291
             + +    G L P   KD +  LW+NE     ++               +FFL +++VPP
Sbjct: 248  DETQLGKRGYLTPMTAKDFVLALWKNEGFFLRYLFPGMDPHKDSAFSPDMFFLDLLVVPP 307

Query: 292  IKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYV----------------------- 328
             ++R  ++ GD +  + QTV L  V++    +    V                       
Sbjct: 308  SRYRPINRVGDRMFTNGQTVNLQAVMKDATLIRKLLVFMAKEQCQPIKIVEDKIQTETGE 367

Query: 329  NQPDNAKVIVA------------RWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEG 376
            ++P +  V+               W+ LQ  VN++FD        +   GI QLLEKKEG
Sbjct: 368  SEPLDRSVLATIPGQTIADKLYNAWIRLQTHVNIVFDSDMDKLMTEKYPGIRQLLEKKEG 427

Query: 377  LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
            LFR+ +MGKRV++A RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++IN
Sbjct: 428  LFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVIN 487

Query: 437  GAEIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVY 494
            G ++HPGA+  +  D   T+    +   R +I ++L T      Q G         K+V 
Sbjct: 488  GPKVHPGASMVINEDGSRTVLSASSLTQREAIAKQLLTPSSGAPQSGL--------KIVC 539

Query: 495  RHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFP 554
            RH++ GDV+L+NRQPTLH+PSI AH  R+L GEK LR+HYANC  YNADFDGDEMN HFP
Sbjct: 540  RHIKSGDVLLLNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHFP 599

Query: 555  QDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYS 614
            Q+E+ RAEAY +   + QY+ P +G PL  LIQDH++S   +T +  F  R+++ +L+Y 
Sbjct: 600  QNELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTTRGCFFTREQYMELVYR 659

Query: 615  SGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRP 674
                       T K G+          +    PAI KP+ LWTGKQV++ +L +I     
Sbjct: 660  ---------GLTDKKGR----------IKTFPPAIMKPQRLWTGKQVVSTLLINI----- 695

Query: 675  PFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEE 734
                     +P+ +         +   K   KG  ++   +                   
Sbjct: 696  ---------IPEKYVPLNLTGKAKIGGKAWMKGPANRCLNL------------------- 727

Query: 735  KEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLS 792
                        + E +++I   +L+ GV+DKA F    YGLVH   E+YG  T+G +L+
Sbjct: 728  ----------DSMCESQVIIRGGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLT 777

Query: 793  ALSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEI 851
             L RLFT +LQ++ GFT G++D+L+  + +R+R   +  S + G  V   AL L + A  
Sbjct: 778  CLGRLFTAYLQLYRGFTMGIEDILVKPEADRKRHKIIKKSNQCGIEVVRAALNLPETASC 837

Query: 852  DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
            + ++ K +     +   D  V   D+K   +   + ++ V    +  GL +   +N + L
Sbjct: 838  EDVQGKWQDAHLCKDQRDFNVV--DLKFKEE-VNNYNNEVNKVCMPFGLHRSFPENNLQL 894

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            M  SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+D++P +GGF+  RFL
Sbjct: 895  MVQSGAKGSTVNTVQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFL 954

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            TG++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQ
Sbjct: 955  TGIKPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQ 1014

Query: 1032 FCYGEDGVDVHQTSFI 1047
            F YGEDG+D+ +T F+
Sbjct: 1015 FLYGEDGLDIPKTQFL 1030



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 79/117 (67%), Gaps = 8/117 (6%)

Query: 1096 NAYIMELPDALKDNAEKFADK--------FLSNEMAKQDFLKLVKHKFVLSLAQPGEPVG 1147
            ++Y   + +  ++  E + +K         + + ++      L+  K+  SL  PGE VG
Sbjct: 1151 DSYFASVSETFENGVEDYINKRECKKGGGCVQSALSSDRLKDLLYLKWQRSLCDPGEAVG 1210

Query: 1148 LLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            LLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L
Sbjct: 1211 LLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVL 1267


>gi|449501452|ref|XP_004176870.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1 [Taeniopygia guttata]
          Length = 1636

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 397/1098 (36%), Positives = 570/1098 (51%), Gaps = 181/1098 (16%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    CPGHFGHI+L + VYNPL F+ LY L++  C  CH     R  V   + +
Sbjct: 45   CATCMQNFSNCPGHFGHIELPLAVYNPLFFDKLYLLIRGSCLNCHMLTCPRAVVHLLLSQ 104

Query: 61   LELIIKGDIIAAKSLDLDLP------SESSNPEDSDVSNKSSCSMVTP---RGNYDNVRN 111
            L+++ KG + A   L++ L       ++++  E  +  N+    M+     R    NV+N
Sbjct: 105  LKVLEKGLLHAVHDLEVILNKFVEQCADATGSEIEEELNRHVQEMLQSSQIRDRCSNVKN 164

Query: 112  LKP-QEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRA 170
            ++  +     QF +A +A        + KC NCK+                       R 
Sbjct: 165  VRECRNKLVSQFWKAHMA--------SKKCPNCKS-----------------------RR 193

Query: 171  NLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSG 230
            +L+R              K+  +   V  P T        G  D  A       G   S 
Sbjct: 194  SLVR--------------KEHNSKLTVTYPSTVYHKPGEEGILDQTA-------GIDESQ 232

Query: 231  FKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVP 290
              K+     G L P   K+ I  LW+NE     ++               +FFL +++VP
Sbjct: 233  LGKR-----GYLTPMTAKEYILALWKNEGFFLRYLFPGLYPNESSGFSPDMFFLDLLVVP 287

Query: 291  PIKFRLPSKGGDSVMEHPQTVLLSKVLQAN-------IYLANAYV--------------- 328
            P ++R  ++ GD +  + QTV L  V++         +++A                   
Sbjct: 288  PSRYRPVNRLGDRLFTNGQTVNLQAVMKDAQVIRKLLVFMAKEQCQPIKITEEIQTVRTG 347

Query: 329  --NQPDNAKVIVA------------RWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKK 374
               +P +  V+               W+ LQ  VN++FD        +   GI QLLEKK
Sbjct: 348  EDTEPLDRSVLTTIPGQSIADKLYNAWIRLQSHVNIVFDSDMDKLMTEKYPGIRQLLEKK 407

Query: 375  EGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSI 434
            EGLFR+ +MGKRV++A RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++
Sbjct: 408  EGLFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAV 467

Query: 435  INGAEIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKM 492
            ING ++HPGA+  +  D   T+    +   R +I ++L T      Q G         K+
Sbjct: 468  INGPKVHPGASMVINEDGSHTVLSATSLTQREAIAKQLLTPSSGAPQTGL--------KI 519

Query: 493  VYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVH 552
            V RH+++GDV+L+NRQPTLH+PSI AH  R+L G+K LR+HYANC  YNADFDGDEMN H
Sbjct: 520  VCRHIKNGDVLLLNRQPTLHRPSIQAHRARILPGDKVLRLHYANCKAYNADFDGDEMNAH 579

Query: 553  FPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLL 612
            FPQ E+ RAEAY +   + QY+ P +G PL  LIQDH++S   +T +  F  R+++ +L+
Sbjct: 580  FPQSELGRAEAYTLAITDKQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQYMELV 639

Query: 613  YSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRG 672
            Y            T K G+         ++ P  PAI KP+ LWTGKQV++ +L +I   
Sbjct: 640  YR---------GLTDKKGR--------IKIFP--PAIMKPQRLWTGKQVVSTLLINI--- 677

Query: 673  RPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPG 732
                       +P +                      +  N   K K G +  V     G
Sbjct: 678  -----------IPDNH---------------------APLNLTGKAKIGGRAWV----KG 701

Query: 733  EEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTL 790
              KE     S    + E +++I   +L+ GV+DKA F    YGLVH   E+YG  T+G +
Sbjct: 702  PAKECLNLDS----MCESQVIIRDGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKV 757

Query: 791  LSALSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGA 849
            L+ L RLFT +LQ++ GFT G++D+L+ ++ + +RK  +  S + G  V   AL L + A
Sbjct: 758  LTCLGRLFTAYLQLYRGFTMGIEDILVKREADHKRKKIIERSRQSGIEVVRAALNLPETA 817

Query: 850  EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWI 909
              + ++ K +     +   D  +   DMK   +   + ++ V    +  GL +   +N +
Sbjct: 818  SCEEVQGKWQDAHLCKDQRDFNMV--DMKFKEE-VNNYNNEVNKVCMPLGLHRSFPENNL 874

Query: 910  SLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDR 969
             LM  SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+D++P +GGF+  R
Sbjct: 875  QLMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGR 934

Query: 970  FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSI 1029
            FLTG+RP E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+
Sbjct: 935  FLTGIRPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSV 994

Query: 1030 VQFCYGEDGVDVHQTSFI 1047
            VQF YGEDG+D+ +T F+
Sbjct: 995  VQFLYGEDGLDIPKTQFL 1012



 Score =  107 bits (268), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 70/97 (72%), Gaps = 4/97 (4%)

Query: 1108 DNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFH 1167
            +N+  +    LS++  K D L L   K+  SL  PGE VGLLA+QS+GEPSTQMTLNTFH
Sbjct: 1157 ENSRSYTHSALSSDRLK-DLLYL---KWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFH 1212

Query: 1168 LAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
             AGRGEMNVTLGIPR    L +AS +IKTP+++ P+L
Sbjct: 1213 FAGRGEMNVTLGIPRXXXXLMVASSNIKTPMMSVPVL 1249


>gi|390474234|ref|XP_003734751.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform 2
            [Callithrix jacchus]
          Length = 1660

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 403/1104 (36%), Positives = 575/1104 (52%), Gaps = 174/1104 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCAQDFNNCSGHLGHIELPLMVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P  S++  +                     E 
Sbjct: 124  LRVLEVGALQAVYELERILNRFLEENADPSASEIQEE--------------------LEQ 163

Query: 118  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGW-IHMNG--MPHADIRANLIR 174
             + +  +  L   Q   ++      C++++  I+   F W  HMN    PH         
Sbjct: 164  YTTEIVQNNLLGSQGSHVKNV----CESRSKIIA---FFWKTHMNPKRCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L                TFP T    A   QK S   P G ++ 
Sbjct: 208  -CKTGRSVVRKEHNSKLTI--------------TFPATVHRTA--GQKDSE--PLGIEEA 248

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L P+  ++ +  LW+NE F L    S +   G   +   S+FFL  ++VPP +
Sbjct: 249  QMGKRGYLTPTSAREHLFALWKNEGFFLNYLFSGVDNDGMESRFNPSVFFLDFLVVPPSR 308

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKV 336
            +R  S+ GD +  + QTV L  V++  + +                 A    ++  ++ +
Sbjct: 309  YRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPGDVAVPLTDEGKDSLI 368

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             + R                  W+ LQ  VN++FD +      D   GI Q+LEKKEGLF
Sbjct: 369  TIDRAFLSTIPGQSFIDKLYNIWIRLQSHVNIVFDSEMDKLMTDKYPGIRQILEKKEGLF 428

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 429  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 488

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 489  NVHPGASMVINEDGSRTALSAVDVSQREAVAKQLLT-------PAMGAPKPQGTKIVCRH 541

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 542  VKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 601

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y   
Sbjct: 602  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREQYMELVYRG- 660

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L            P+I KP PLWTGKQV++ +L +I       
Sbjct: 661  --------LTDKLGRVKLFP----------PSILKPFPLWTGKQVVSTLLINI------- 695

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D                N  GK   T K         KE  +  PG   +
Sbjct: 696  -------IPEDHIPL------------NLTGKAKITGK------AWVKETPQSVPGFNPD 730

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
            +         + E +++I + +L+ GV+DKA +    YGLVH   E+YG   +G +L+ L
Sbjct: 731  S---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGEISGKVLTCL 781

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT GV+D+L+    + +R+  +  S   G R    AL L + A  D 
Sbjct: 782  ARLFTAYLQLYRGFTLGVEDILVKLKADVKRQQIIEESIHCGLRAVRAALNLPEAASYDE 841

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            ++ K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 842  VREK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQMMV 898

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 899  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 958

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            ++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF 
Sbjct: 959  IKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFL 1018

Query: 1034 YGEDGVDVHQTSFIS--KFDALAA 1055
            YGEDG+DV +T F+   +F  LA+
Sbjct: 1019 YGEDGLDVPKTQFLQPKQFPFLAS 1042



 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 81/114 (71%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL +PGE VGLLA+QS
Sbjct: 1159 VSETFETKVDDYSQEWAAQTERSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 1218

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L  K
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTK 1272


>gi|363733636|ref|XP_420851.3| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1 [Gallus gallus]
          Length = 1703

 Score =  613 bits (1582), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 387/1090 (35%), Positives = 564/1090 (51%), Gaps = 172/1090 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    CPGHFGHI+L + VYNPL F+ LY L++  C  CH    +R  V   + +
Sbjct: 64   CATCMQNFSNCPGHFGHIELPLTVYNPLFFDKLYLLIRGSCLNCHMLTCTRAVVHLLLSQ 123

Query: 61   LELIIKGDIIAAKSLD------LDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKP 114
            L+++  G + A   L+      L+  ++++  E  +  N     ++  +   D   N+K 
Sbjct: 124  LKVLEHGLLHAVHDLEVILNRFLEQSADATALEIEEELNHHVDEILQSQELSDQCSNVK- 182

Query: 115  QEWTSLQFAEAKLALL-QFLKIETT--KCGNCKAKNPRISKPTFGWIHMNGMPHADIRAN 171
                     E +  L+ QF K   T  KC NCK+                       R +
Sbjct: 183  ------NVCECRNKLISQFWKAHMTSKKCPNCKS-----------------------RRS 213

Query: 172  LIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGF 231
            L+R                                 T+P T     +  ++G G  P+  
Sbjct: 214  LVR------------------------KEHNSKLTVTYPST--VLRKAGEEGIGDEPAAI 247

Query: 232  KKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPP 291
             + +    G L P   K+ +  LW+NE     ++               +FFL +++VPP
Sbjct: 248  DETQLGKRGYLTPMTAKEFVLALWKNEGFFLRYLFPGMDPHKDSAFSPDMFFLDLLVVPP 307

Query: 292  IKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYV-----------------NQPDNA 334
             ++R  ++ GD +  + QTV L  V++    +    V                 ++P + 
Sbjct: 308  SRYRPINRVGDRMFTNGQTVNLQAVMKDATLIRKLLVFMAKEQCQPIKIETGESDEPLDR 367

Query: 335  KVIVA------------RWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKL 382
             V+               W+ LQ  VN++FD        +   GI QLLEKKEGLFR+ +
Sbjct: 368  SVLATIPGQTIADKLYNAWIRLQTHVNIVFDSDMDKMMTEKYPGIRQLLEKKEGLFRKHM 427

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
            MGKRV++A RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING ++HP
Sbjct: 428  MGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVINGPKVHP 487

Query: 443  GATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDG 500
            GA+  +  D   T+    +   R +I ++L T      Q G         K+V RH++ G
Sbjct: 488  GASMVINEDGSRTVLSASSLTQREAIAKQLLTPSSGAPQSGL--------KIVCRHIKSG 539

Query: 501  DVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSR 560
            DV+L+NRQPTLH+PSI AH  R+L GEK LR+HYANC  YNADFDGDEMN HFPQ+E+ R
Sbjct: 540  DVLLLNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQNELGR 599

Query: 561  AEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSS 620
            AEAY +   + QY+ P +G PL  LIQDH+ S   +T +  F  R+++ +L+Y       
Sbjct: 600  AEAYTLAFTDEQYLVPKDGKPLPGLIQDHMXSGVSMTIRGCFFTREQYMELVYR------ 653

Query: 621  GLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVER 680
                 T K G+          +    PAI KP+ LWTGKQV++ +L +I           
Sbjct: 654  ---GLTDKKGR----------IKTFPPAIMKPQRLWTGKQVVSTLLINI----------- 689

Query: 681  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
               +P+                          N +  + +GK K  + GK      A   
Sbjct: 690  ---IPE--------------------------NHVPLNLTGKAK--IGGKAWMRGPANSC 718

Query: 741  KSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLF 798
             + +  L E +++I   +L+ GV+DKA F    YGLVH   E+YG  T+G +L+ L RLF
Sbjct: 719  LNLD-SLCESQVIIRSGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLTCLGRLF 777

Query: 799  TVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLK 857
            T +LQ++ GFT G++D+L+  + +R+R   +  S + G  V   AL L + +  + ++ K
Sbjct: 778  TAYLQLYRGFTMGIEDILVKPEADRKRHKIIKKSSQCGIEVVRAALNLPETSSCEDVQGK 837

Query: 858  SEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGA 917
             +     +   D  +   D+K   +   + ++ V    +  GL +   +N + LM  SGA
Sbjct: 838  WQDAHLCKDQRDFNMV--DLKFKEE-VNNYNNEVNKVCMPFGLHRSFPENNLQLMVQSGA 894

Query: 918  KGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQ 977
            KGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+D++P +GGF+  RFLTG++P 
Sbjct: 895  KGSTVNTVQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPS 954

Query: 978  EYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGED 1037
            E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF YGED
Sbjct: 955  EFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGED 1014

Query: 1038 GVDVHQTSFI 1047
            G+D+ +T F+
Sbjct: 1015 GLDIPKTQFL 1024



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/75 (70%), Positives = 64/75 (85%)

Query: 1130 LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTI 1189
            L+  K+  SL  PGE VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +
Sbjct: 1187 LLYLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMV 1246

Query: 1190 ASKDIKTPVITCPLL 1204
            AS +IKTP+++ P+L
Sbjct: 1247 ASANIKTPMMSVPVL 1261


>gi|13929086|ref|NP_113960.1| DNA-directed RNA polymerase I subunit RPA1 [Rattus norvegicus]
 gi|3914802|sp|O54889.1|RPA1_RAT RecName: Full=DNA-directed RNA polymerase I subunit RPA1; Short=RNA
            polymerase I subunit A1; AltName: Full=DNA-directed RNA
            polymerase I largest subunit; AltName: Full=DNA-directed
            RNA polymerase I subunit A; AltName: Full=RNA polymerase
            I 194 kDa subunit; Short=A194; Short=RPA194
 gi|2739050|gb|AAB94601.1| RNA polymerase I 194 kDa subunit [Rattus norvegicus]
          Length = 1716

 Score =  613 bits (1581), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 403/1107 (36%), Positives = 579/1107 (52%), Gaps = 173/1107 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHIDL + VYNPLLF+ LY LL+  C  CH     R  +   V +
Sbjct: 64   CSTCVQDFNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAIHLLVCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L+++  G + A   L+  L     E+S+P   ++  +                    +E+
Sbjct: 124  LKVLDVGALQAVYELERILSRFLEETSDPSAFEIQEEL-------------------EEY 164

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
            TS      K+     L  +     N C++++  ++   F   HM     PH     +++R
Sbjct: 165  TS------KILQNNLLGSQGAHVKNVCESRSKLVAH--FWKTHMAAKRCPHCKTGRSVVR 216

Query: 175  ---GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGF 231
                  L  T+     +K      D + PE                     G+ A P G 
Sbjct: 217  KEHNSKLTITYPAMVHKK--SGQKDAELPE---------------------GAPAAP-GI 252

Query: 232  KKQKDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVP 290
             + +    G L PS  ++ +  +W+NE F L    S +   G       S+FFL  ++VP
Sbjct: 253  DEAQMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVP 312

Query: 291  PIKFRLPSKGGDSVMEHPQTVLLSKVLQANIY-----------------LANAYVNQPDN 333
            P ++R  ++ GD +  + QTV L  V++  +                  +    +++ ++
Sbjct: 313  PSRYRPINRLGDQMFTNGQTVNLQAVMKDAVLIRKLLAVMAQEQKLPCEMTEITIDKEND 372

Query: 334  AKVIVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKE 375
            +   + R                  W+ LQ  VN++FD        +   GI Q+LEKKE
Sbjct: 373  SSGAIDRSFLSLLPGQSLTDKLYNIWIRLQSHVNIVFDSDMDKLMLEKYPGIRQILEKKE 432

Query: 376  GLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSII 435
            GLFR+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++I
Sbjct: 433  GLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVI 492

Query: 436  NGAEIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMV 493
            NG  +HPGA+  +  D   T     +   R ++ ++L T    I +P          K+V
Sbjct: 493  NGPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTPSTGIPKPQG-------AKVV 545

Query: 494  YRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHF 553
             RH+++GD++L+NRQPTLH+PSI AH   +L  EK LR+HYANC  YNADFDGDEMN HF
Sbjct: 546  CRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMNAHF 605

Query: 554  PQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLY 613
            PQ E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y
Sbjct: 606  PQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVY 665

Query: 614  SSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGR 673
                        T K G+  L            PAI KP PLWTGKQV++ +L +I    
Sbjct: 666  RG---------LTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI---- 702

Query: 674  PPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGE 733
                      +P+D+                     +  N   K K G K  V E KP  
Sbjct: 703  ----------IPEDY---------------------TPLNLTGKAKIGSKAWVKE-KPRP 730

Query: 734  EKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLL 791
              + + +      + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L
Sbjct: 731  VPDFDPDS-----MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVL 785

Query: 792  SALSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAE 850
            + L+RLFT +LQ++ GFT GV+D+L+  + +  R+  +  S + G R    AL L + A 
Sbjct: 786  TCLARLFTAYLQLYRGFTLGVEDILVKPNADVMRQRIIEESTQCGPRAVRAALNLPEAAS 845

Query: 851  IDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS 910
             D I+ K   + A+           DMK   ++N H S+ +    +  GL +   +N + 
Sbjct: 846  CDEIQGK--WQDAIWRKDQRDFNMIDMKFKEEVN-HYSNEINKACMPFGLHRQFPENNLQ 902

Query: 911  LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRF 970
            +M  SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RF
Sbjct: 903  MMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRF 962

Query: 971  LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIV 1030
            LTG+RP E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L I YD +VRD+DGS+V
Sbjct: 963  LTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVV 1022

Query: 1031 QFCYGEDGVDVHQTSFIS--KFDALAA 1055
            QF YGEDG+D+ +T F+   +F  LA+
Sbjct: 1023 QFLYGEDGLDIPKTQFLQPKQFPFLAS 1049



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 69/88 (78%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            +E++      L++ K+  SL  PGE VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLG
Sbjct: 1192 SELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLG 1251

Query: 1180 IPRLQEILTIASKDIKTPVITCPLLVGK 1207
            IPRL+EIL +AS +IKTP+++ P+   K
Sbjct: 1252 IPRLREILMVASANIKTPMMSVPVFNTK 1279


>gi|403303957|ref|XP_003942581.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Saimiri
            boliviensis boliviensis]
          Length = 1720

 Score =  612 bits (1579), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 402/1108 (36%), Positives = 578/1108 (52%), Gaps = 182/1108 (16%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCVQDFNNCSGHLGHIELPLMVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLICQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P  S++  +                     E 
Sbjct: 124  LRVLEVGALQAVYELERILNRFLEENADPSASEIQEE--------------------LEQ 163

Query: 118  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGW-IHMNG--MPHADIRANLIR 174
             + +  +  L   Q  +++      C++++  I+   F W  HMN    PH         
Sbjct: 164  YTTEIVQNNLLGSQGAQVKNV----CESRSKLIA---FFWKTHMNPKRCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L                TFP      A   QK S   P G ++ 
Sbjct: 208  -CKTGRSVVRKEHNSKLTI--------------TFPAMVHRTA--GQKDSE--PLGIEEA 248

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L P+  ++ +  LW+NE F L    S ++      +   S+FFL  ++VPP +
Sbjct: 249  QMGKRGYLTPTSAREQLLALWKNEGFFLNYLFSGVEDDDTESRFNPSVFFLDFLVVPPSR 308

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKV 336
            +R  S+ GD +  + QTV L  V++  + +                 A    ++  ++ +
Sbjct: 309  YRPVSRVGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPGDVAVPPTDEEKDSLI 368

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             + R                  W+ LQ  VN++FD +      D   GI Q+LEKKEGLF
Sbjct: 369  AIDRSFLSTLPGQSFIDKLYNIWVRLQSHVNIVFDSEMDKLMTDKYPGIRQILEKKEGLF 428

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 429  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 488

Query: 439  EIHPGATHYLDK------LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKM 492
             +HPGA+  +++      LST+    +   R ++ ++L T       P   +      K+
Sbjct: 489  NVHPGASMVINEDGSRTALSTV----DVSQREAVAKQLLT-------PAMGAPKPQGTKI 537

Query: 493  VYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVH 552
            V RH+++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN H
Sbjct: 538  VCRHVKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAH 597

Query: 553  FPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLL 612
            FPQ E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+
Sbjct: 598  FPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREQYMELV 657

Query: 613  YSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRG 672
            Y            T K G+  L            P+I KP PLWTGKQV++ +L +I   
Sbjct: 658  YR---------GLTDKVGRVKLFP----------PSILKPFPLWTGKQVVSTLLINI--- 695

Query: 673  RPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPG 732
                       +P+D                N  GK   T K         KE     PG
Sbjct: 696  -----------IPEDHIPL------------NLTGKAKITGK------AWVKETPRSVPG 726

Query: 733  EEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTL 790
               ++         + E +++I + +L+ GV+DKA +    YGLVH   E+YG   +G +
Sbjct: 727  FNPDS---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGEISGKV 777

Query: 791  LSALSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGA 849
            L+ L+RLFT +LQ++ GFT GV+D+L+    + +R+  +  S   G R    AL L + A
Sbjct: 778  LTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQQIIEESIHCGPRAVRAALNLPEAA 837

Query: 850  EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWI 909
              D ++ K   + A  G         D+K   ++N H S+ +    +  GL +   +N +
Sbjct: 838  SYDEVRGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSL 894

Query: 910  SLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDR 969
             +M  SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  R
Sbjct: 895  QMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGR 954

Query: 970  FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSI 1029
            FLTG++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+
Sbjct: 955  FLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSV 1014

Query: 1030 VQFCYGEDGVDVHQTSFIS--KFDALAA 1055
            VQF YGEDG+DV +T F+   +F  LA+
Sbjct: 1015 VQFLYGEDGLDVPKTQFLQPKQFPFLAS 1042



 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 78/104 (75%)

Query: 1104 DALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTL 1163
            D  ++ A +    +  +E++ +    L++ K+  SL +PGE VGLLA+QS+GEPSTQMTL
Sbjct: 1169 DYSQEWAAQTERSYEKSELSLERLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTL 1228

Query: 1164 NTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            NTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L  K
Sbjct: 1229 NTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTK 1272


>gi|326426598|gb|EGD72168.1| Crp22 [Salpingoeca sp. ATCC 50818]
          Length = 1617

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 400/985 (40%), Positives = 549/985 (55%), Gaps = 145/985 (14%)

Query: 272  GFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQP 331
            G  ++    +FF+  + VPP +FR  +      +E+ +T+ L+ V++  + +     + P
Sbjct: 291  GLQRRFTAEVFFVKAISVPPNRFRPVNFLNGQSIENERTIALADVVKDCVAIDELVRHDP 350

Query: 332  DNAKV-----------------IVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKK 374
            +                     +   W  LQ+ VNV  D   +    D A GI Q LE+K
Sbjct: 351  NQESAPGKATSRAMTEKRYRERLTQAWHALQEHVNVFMDSSLSPRMTD-AKGIRQGLERK 409

Query: 375  EGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSI 434
            EGLFR  +MGKRVNYA R+VISPDP +  +EIGIP  FA  LTYP+ VTPWN+  LR  +
Sbjct: 410  EGLFRMNMMGKRVNYAARTVISPDPLIGTHEIGIPDVFARTLTYPQPVTPWNMKYLRQCV 469

Query: 435  INGAEIHPGATHYLDK----LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
            INGA+ +PGATH  D+    +S   L  +++ RIS+  +L T +       K      + 
Sbjct: 470  INGADQYPGATHVQDEDGRMISLKYL--SEESRISVADQLLTRK------TKTLGRSHKC 521

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
            K+V+RH ++GD VL+NRQPTLHK SIMA  VRVL  ++  R+HYANC ++NADFDGDEMN
Sbjct: 522  KIVHRHAKNGDWVLMNRQPTLHKSSIMAFQVRVLPKDRAFRLHYANCKSFNADFDGDEMN 581

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E++RAEA  I     QY+    G PLR LIQDH+++   +  +DTF ++D +  
Sbjct: 582  MHLPQSELARAEAAEIAANFTQYIG-LGGGPLRGLIQDHVIAGTKICCRDTFYDKDHYQA 640

Query: 611  LLYSS---GVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLN 667
            L+Y++    V + G+                  E+LP  P + KP  LW+GKQVI+ V+ 
Sbjct: 641  LVYAALEDRVDTCGI------------------ELLP--PCMIKPRKLWSGKQVISTVMK 680

Query: 668  HITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVV 727
            ++TRG+         K+                  KN   K S                 
Sbjct: 681  NVTRGKVGVYYTGSTKI------------------KNSWSKCST---------------- 706

Query: 728  EGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSN 785
                  E E E             +++  ++L+ G++DKAQ   ++  LVH   E +G  
Sbjct: 707  ------ELEGEST-----------VIVRDDELLCGLLDKAQCGASNNSLVHVYFETHGGR 749

Query: 786  TAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALEL 845
             AG LL+A  +LFT++L+ HG T  +DDLL+ K+ +  R+  +  SE  G +   + ++ 
Sbjct: 750  VAGDLLTAFGKLFTMWLKYHGATLSIDDLLLTKEADIRRRKSIEQSEASGPQAAAKFVKQ 809

Query: 846  EDGAEIDPIKLKSEIEKAMRGGGDAAVAY--FDMKMTSQLNKHTSSSVINELLSEGLLKP 903
            ED  +I P+ L+S I   +R     AV +   D  M    NK  S    ++ + +GLLK 
Sbjct: 810  EDPTDI-PL-LRSNIATILRD----AVEHKGLDSTMAGAANKVQSEVACSKNIPDGLLKQ 863

Query: 904  TGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAG 963
               N   L+  SGAKGS VN  QIS  LGQQ LEG+RVP M+SGKTLPSF  +D + RAG
Sbjct: 864  FPDNNFQLIVQSGAKGSNVNATQISGMLGQQMLEGRRVPVMMSGKTLPSFAAFDPSLRAG 923

Query: 964  GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
            G I DRFLTGLRPQEY+FHCMAGREGLVDTAVKTSRSGYLQRCLIK+LE LK+ YD +VR
Sbjct: 924  GLITDRFLTGLRPQEYFFHCMAGREGLVDTAVKTSRSGYLQRCLIKHLEDLKVQYDMTVR 983

Query: 1024 DADGSIVQFCYGEDGVDVHQTSFISKFDALAARERG------RGRGRNKFCDKGSHTFVM 1077
            D+DGS+VQF YGEDG+DV + + +  F   A   +G       GR  + F  K S   + 
Sbjct: 984  DSDGSVVQFRYGEDGIDVTKAAQLGNFKFFADNYQGLLNRLCAGRIADAFPGKLSKVAI- 1042

Query: 1078 GRNQEMIYKKCSGQLDASNAYIMEL-PD------------ALKDNAEK-----FADKFLS 1119
               ++M  KK     D  +  +  L PD            A+ + A+K        KF  
Sbjct: 1043 ---RQM--KKALKHPDEHDPVLTTLRPDTHLGCISEKLYKAMIEYADKHKNDVLVQKFKD 1097

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
             E++   F  +V  K   +LA PGE VG+ A+Q+VGEPSTQMTLNTFH AGRG++NVTLG
Sbjct: 1098 TELSPARFKSVVYMKSHHALADPGEAVGICAAQAVGEPSTQMTLNTFHFAGRGDVNVTLG 1157

Query: 1180 IPRLQEILTIASKDIKTPVITCPLL 1204
            IPRL+EI+  ASK  KTP+I  P+L
Sbjct: 1158 IPRLREIIMTASKAAKTPLIKVPIL 1182



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 46/75 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG     CPGH GH++L + VY+P+ F+ L+ LL+  C  CH  KA+R ++     +
Sbjct: 65  CETCGLLGVHCPGHLGHVELPLYVYHPMYFDRLFLLLRATCLHCHRLKATRFQLRLLQCQ 124

Query: 61  LELIIKGDIIAAKSL 75
            +L+    ++AAK L
Sbjct: 125 HKLLENQCVVAAKEL 139


>gi|348566419|ref|XP_003468999.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cavia
            porcellus]
          Length = 1716

 Score =  610 bits (1574), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 396/1104 (35%), Positives = 572/1104 (51%), Gaps = 168/1104 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   V +
Sbjct: 64   CSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLPS---ESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L +   E+++P   ++  +                       
Sbjct: 124  LRVLEVGALQAVYELERILTTFLEENADPSSFEIQEE----------------------- 160

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGW-IHMNG--MPHADIRANLI 173
              L+    K+     L  +     N C++++  I   T+ W  HM     PH        
Sbjct: 161  --LEQYTTKIVQNNLLGAQGAHVKNVCESRSKLI---TYFWKAHMTAKRCPH-------- 207

Query: 174  RGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKK 233
              C  G +    E    L  +      +        P  +DT     Q G+  +      
Sbjct: 208  --CKTGRSVVRKEHNSKLTVTYPTMVHKK-------PDQKDTEGLGKQPGAPGIEEAQMG 258

Query: 234  QKDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPI 292
            ++    G L PS  ++ +  +W+NE F L      +   G   +   S+FFL  ++VPP 
Sbjct: 259  KR----GYLTPSSAREHLGAIWKNEGFFLNYLFLGLDDVGMKSRFNPSVFFLDFLVVPPS 314

Query: 293  KFRLPSKGGDSVMEHPQTVLLSKVLQANIYL----------------ANAYVNQPDNAKV 336
            ++R  ++ GD +  + QTV L  V++  + +                  A  ++  +  V
Sbjct: 315  RYRPVNRLGDQMFTNGQTVNLQAVMKDIVLIRKLLALMAQEQQLPTDVEALTDEQKDPLV 374

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             V R                  W+ LQ  VN++FD +      +   GI Q+LEKKEGLF
Sbjct: 375  AVDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKFPGIRQILEKKEGLF 434

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 435  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 494

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 495  NVHPGASMVINEDGSRTALSTGDIAQREAVAKQLLT-------PATGAPKPQGTKIVCRH 547

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH+ R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 548  VKNGDILLLNRQPTLHRPSIQAHLARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 607

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F NR+++ +L+Y   
Sbjct: 608  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFNREQYMELVY--- 664

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                GL    G+            ++ P  PAI KP PLWTGKQV++ +L +I       
Sbjct: 665  ---RGLTDRVGR-----------VKLFP--PAILKPFPLWTGKQVVSTLLINI------- 701

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D+                        N + K K   K  V      +E  
Sbjct: 702  -------IPEDYI---------------------PLNLIGKAKIPGKAWV------QETP 727

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
                      + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L
Sbjct: 728  RPVPNFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCL 787

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT G++D+L+    + +R   +  S + G +    AL L D A  D 
Sbjct: 788  ARLFTAYLQLYRGFTLGMEDILVKPKADEKRHQIIEESTQCGPQAVRAALNLPDTASCDE 847

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            ++ K   + A  G         DMK   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 848  VRDK--WQDAHLGKDQRDFNVIDMKFKEEVN-HYSNEINKACMPFGLHRQFPENNLQMMV 904

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 905  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 964

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            ++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF 
Sbjct: 965  IKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFL 1024

Query: 1034 YGEDGVDVHQTSFIS--KFDALAA 1055
            YGEDG+D+ +T F+   +F  LA+
Sbjct: 1025 YGEDGLDIPKTPFLQPKQFPFLAS 1048



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 71/91 (78%)

Query: 1114 ADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGE 1173
            A+K   +E++      L++ K+  SL  PGE VGLLA+QS+GEPSTQMTLNTFH AGRGE
Sbjct: 1184 AEKSYKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGE 1243

Query: 1174 MNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            MNVTLGIPRL+EIL +AS +IKTP+++ P+ 
Sbjct: 1244 MNVTLGIPRLREILMVASANIKTPMMSVPVF 1274


>gi|281339706|gb|EFB15290.1| hypothetical protein PANDA_018669 [Ailuropoda melanoleuca]
          Length = 1692

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 398/1104 (36%), Positives = 571/1104 (51%), Gaps = 174/1104 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   V +
Sbjct: 40   CSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQ 99

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P   ++  +                       
Sbjct: 100  LRVLEVGALQAVYELERILNRFLEENADPTAFEIQEE----------------------- 136

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
              L+   AK+     L        N C++K+  I+   F   HM     PH         
Sbjct: 137  --LEQYTAKIVQNNLLGSHGAHVKNVCESKSKLIA--YFWKTHMTAKRCPH--------- 183

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L                T+P      A  +QK +   P G ++ 
Sbjct: 184  -CKTGRSVVRKEHNSKLTV--------------TYPAMVHKKA--NQKDTE--PLGIEEA 224

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L P+  ++ +  LW+NE F L    S ++      +   S+FFL  ++VPP +
Sbjct: 225  QMGKRGYLTPTSAREHLTALWKNEGFFLNYLFSGLENVDMESRFNPSMFFLDFLVVPPSR 284

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKV 336
            +R  ++ GD +  + QTV L  V++  + +                 A    ++  ++ V
Sbjct: 285  YRPVNRLGDQMFTNGQTVNLQAVMKDMVLIRKLLALMAQEQELPCEVAAPAKDEDKDSSV 344

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
            ++ R                  W+ LQ  VN++FD +      +   GI Q+LEKK+GLF
Sbjct: 345  VLDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQILEKKDGLF 404

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 405  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 464

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     N   R ++ ++L T       P   +      K+V RH
Sbjct: 465  NVHPGASMVINEDGSRTALSAVNLTQREAVAKQLLT-------PATGAPKPQGTKIVCRH 517

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 518  VKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 577

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +LLY   
Sbjct: 578  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELLYR-- 635

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L            PAI KP PLWTGKQV++ +L +I       
Sbjct: 636  -------GLTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI------- 671

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D                     LS + K   +     +E     PG   +
Sbjct: 672  -------IPEDHI------------------PLSLSGKAKINGKAWVQESPRPVPGFNPD 706

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
            +         + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L
Sbjct: 707  S---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCL 757

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT GV+D+L+    + +R   +  S   G R    AL L + A  D 
Sbjct: 758  ARLFTAYLQLYRGFTLGVEDILVKPKADVKRHRVIEESTHCGPRAVRAALNLPEAASCDE 817

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            ++ K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 818  VRGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENNLQMMV 874

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 875  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 934

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            ++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF 
Sbjct: 935  IKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFL 994

Query: 1034 YGEDGVDVHQTSFIS--KFDALAA 1055
            YGEDG+D+ +T F+   +F  LA+
Sbjct: 995  YGEDGLDIPKTQFLQPKQFPFLAS 1018



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 78/114 (68%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D   + A +    +  +E++      L++ K+  SL  PGE VGLLA+QS
Sbjct: 1135 VSETFERKMDDYSLEWASQAERSYEKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQS 1194

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+   K
Sbjct: 1195 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVFNTK 1248


>gi|301786528|ref|XP_002928679.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like
            [Ailuropoda melanoleuca]
          Length = 1716

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 398/1104 (36%), Positives = 571/1104 (51%), Gaps = 174/1104 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   V +
Sbjct: 64   CSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P   ++  +                       
Sbjct: 124  LRVLEVGALQAVYELERILNRFLEENADPTAFEIQEE----------------------- 160

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
              L+   AK+     L        N C++K+  I+   F   HM     PH         
Sbjct: 161  --LEQYTAKIVQNNLLGSHGAHVKNVCESKSKLIA--YFWKTHMTAKRCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L                T+P      A  +QK +   P G ++ 
Sbjct: 208  -CKTGRSVVRKEHNSKLTV--------------TYPAMVHKKA--NQKDTE--PLGIEEA 248

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L P+  ++ +  LW+NE F L    S ++      +   S+FFL  ++VPP +
Sbjct: 249  QMGKRGYLTPTSAREHLTALWKNEGFFLNYLFSGLENVDMESRFNPSMFFLDFLVVPPSR 308

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKV 336
            +R  ++ GD +  + QTV L  V++  + +                 A    ++  ++ V
Sbjct: 309  YRPVNRLGDQMFTNGQTVNLQAVMKDMVLIRKLLALMAQEQELPCEVAAPAKDEDKDSSV 368

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
            ++ R                  W+ LQ  VN++FD +      +   GI Q+LEKK+GLF
Sbjct: 369  VLDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQILEKKDGLF 428

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 429  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 488

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     N   R ++ ++L T       P   +      K+V RH
Sbjct: 489  NVHPGASMVINEDGSRTALSAVNLTQREAVAKQLLT-------PATGAPKPQGTKIVCRH 541

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 542  VKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 601

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +LLY   
Sbjct: 602  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELLYR-- 659

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L            PAI KP PLWTGKQV++ +L +I       
Sbjct: 660  -------GLTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI------- 695

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+D                     LS + K   +     +E     PG   +
Sbjct: 696  -------IPEDHI------------------PLSLSGKAKINGKAWVQESPRPVPGFNPD 730

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
            +         + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L
Sbjct: 731  S---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCL 781

Query: 795  SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +RLFT +LQ++ GFT GV+D+L+    + +R   +  S   G R    AL L + A  D 
Sbjct: 782  ARLFTAYLQLYRGFTLGVEDILVKPKADVKRHRVIEESTHCGPRAVRAALNLPEAASCDE 841

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            ++ K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 842  VRGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENNLQMMV 898

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 899  QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 958

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            ++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF 
Sbjct: 959  IKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFL 1018

Query: 1034 YGEDGVDVHQTSFIS--KFDALAA 1055
            YGEDG+D+ +T F+   +F  LA+
Sbjct: 1019 YGEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 78/114 (68%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D   + A +    +  +E++      L++ K+  SL  PGE VGLLA+QS
Sbjct: 1159 VSETFERKMDDYSLEWASQAERSYEKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQS 1218

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+   K
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVFNTK 1272


>gi|388853445|emb|CCF52844.1| related to DNA-directed RNA polymerase I [Ustilago hordei]
          Length = 1798

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 370/886 (41%), Positives = 491/886 (55%), Gaps = 167/886 (18%)

Query: 254  LWENEFELCSFISDMQQQGFGK---------------KAGHSI-----------FFLGVV 287
            L+ NE  LCS +       FG+               K G SI           FF+ V+
Sbjct: 344  LFHNEGPLCSLL-------FGRNGPFRLGNSNGKVKVKTGSSIWQTPNGASADNFFITVL 396

Query: 288  LVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYV----------------NQP 331
             VPP +FR  S  GD   E+ Q  LL+  L+    + +                   N P
Sbjct: 397  AVPPTRFRPASIMGDMTFENSQNELLTNALKTTFAIRDQITELTRLTSKKDFPELGPNAP 456

Query: 332  ----------------DNAKVIVARWMNLQQSVNVLFDG-KNAAGQRD---MASGICQLL 371
                            D  + ++   M LQ  VN   D  KN    R       G+ Q L
Sbjct: 457  ESDYRAAEVQLIKAREDTRRKVLNSMMQLQVDVNSFIDANKNPMPLRQGQLPPPGVKQGL 516

Query: 372  EKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLR 431
            EKKEGLFR+ +MGKRVN+A RSVISPD  +  NEIG+PP FA +LTYPE  T  N+  +R
Sbjct: 517  EKKEGLFRKHMMGKRVNFAARSVISPDVNIETNEIGVPPVFARKLTYPEPATVHNIQLMR 576

Query: 432  DSIINGAEIHPGATHY---------LDKLSTMRLPPNKKMRISIGRKLDT--------SR 474
              +ING   +PGA            LDKLS        + R ++  +L T        +R
Sbjct: 577  QLVINGPFKYPGAVAIRSEDGTETQLDKLSV-------EERTALANQLLTPQEHSSKQAR 629

Query: 475  GAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY 534
            G     G  +      K V RHL+DGD++L+NRQPTLH+PS+MAH  RVL GEKT+RMHY
Sbjct: 630  GTFAGLGSSTRTPIANKQVLRHLRDGDILLLNRQPTLHRPSMMAHKARVLVGEKTIRMHY 689

Query: 535  ANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAA 594
            ANC++YNADFDGDEMN+HFPQ + +R+E Y + N +NQY+ P++G+PLR LIQDH+V+  
Sbjct: 690  ANCNSYNADFDGDEMNMHFPQSQAARSECYYVANTDNQYLTPTSGNPLRGLIQDHVVAGV 749

Query: 595  LLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEP 654
             +T K+T   R E+ Q+LY +       G +TG  G RVL        +P  PA+ KPEP
Sbjct: 750  WMTSKNTLYTRAEYQQMLYGALRPE---GKYTG--GGRVL-------TVP--PALLKPEP 795

Query: 655  LWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNK 714
            LWTGKQVI+ VL ++                                      K +K++ 
Sbjct: 796  LWTGKQVISTVLLNL--------------------------------------KPAKSDG 817

Query: 715  MHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADY 772
            ++     K    + GK    +E              K++I   +L++GV+DKA F  + Y
Sbjct: 818  LNLTSKAKVAGRMWGKDHANEE--------------KVIIEDGELLQGVLDKAAFGASAY 863

Query: 773  GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSE 832
            GLVH V E+YGS TAG LLS LSRLFT FLQ + F+C +DDLL+ K+ +  R+  L  ++
Sbjct: 864  GLVHAVFEIYGSETAGKLLSILSRLFTKFLQTNAFSCRMDDLLLSKEGDEVRRKTLDAAQ 923

Query: 833  EIGKRVHLEALELEDGAEIDP---IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSS 889
              GK V ++ + LE   E +P     L+  +E+ +R   D  +A  D +M +  N  T S
Sbjct: 924  GQGKGVAMKTVGLEGEDEKNPDTDRNLRIRLEEVLR--DDDKLAVLDGEMMNSSNALT-S 980

Query: 890  SVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKT 949
             +I   L  GL K   +N + +MT SGAKGS VN  QIS  LGQQ LEG+RVP MVSGK+
Sbjct: 981  KIIESCLPAGLYKKFPENNMQMMTGSGAKGSAVNVSQISCLLGQQALEGRRVPLMVSGKS 1040

Query: 950  LPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK 1009
            LPSF P++ + RAGGF+  RFLTG+RPQEY+FHCMAGREGL+DTAVKTSRSGYLQRCLIK
Sbjct: 1041 LPSFRPFETSARAGGFVSGRFLTGIRPQEYFFHCMAGREGLIDTAVKTSRSGYLQRCLIK 1100

Query: 1010 NLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAA 1055
            +LE + I YD +VR+ADGSI+QF YGED +D  ++ +I +FD  AA
Sbjct: 1101 HLEGVHIQYDNTVRNADGSILQFAYGEDALDTTKSKYIGQFDFTAA 1146



 Score =  216 bits (551), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 180/519 (34%), Positives = 256/519 (49%), Gaps = 73/519 (14%)

Query: 748  SEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH 805
            +EEK++I   +L++GV+DKA F  + YGLVH V E+YGS TAG LLS LSRLFT FLQ +
Sbjct: 837  NEEKVIIEDGELLQGVLDKAAFGASAYGLVHAVFEIYGSETAGKLLSILSRLFTKFLQTN 896

Query: 806  GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP---IKLKSEIEK 862
             F+C +DDLL+ K+ +  R+  L  ++  GK V ++ + LE   E +P     L+  +E+
Sbjct: 897  AFSCRMDDLLLSKEGDEVRRKTLDAAQGQGKGVAMKTVGLEGEDEKNPDTDRNLRIRLEE 956

Query: 863  AMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV 922
             +R   D  +A  D +M +  N  TS  +I   L  GL K   +N + +MT SGAKGS V
Sbjct: 957  VLRD--DDKLAVLDGEMMNSSNALTSK-IIESCLPAGLYKKFPENNMQMMTGSGAKGSAV 1013

Query: 923  NFQQISSHLGQQELE---------GKRVPRM------------VSGKTLPSFHPWDW--- 958
            N  QIS  LGQQ LE         GK +P              VSG+ L    P ++   
Sbjct: 1014 NVSQISCLLGQQALEGRRVPLMVSGKSLPSFRPFETSARAGGFVSGRFLTGIRPQEYFFH 1073

Query: 959  --APRAGGFIIDRFLTGLRPQEYYFHCMAGR-EGL---VDTAVKTSRSGYLQRCLIKN-L 1011
              A R G  +ID  +   R   Y   C+    EG+    D  V+ +    LQ    ++ L
Sbjct: 1074 CMAGREG--LIDTAVKTSR-SGYLQRCLIKHLEGVHIQYDNTVRNADGSILQFAYGEDAL 1130

Query: 1012 ECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKG 1071
            +  K  Y   +   D +   F       D  Q S + + + LAA    +   +    D  
Sbjct: 1131 DTTKSKY---IGQFDFTAANFENYNKRYDPKQLSEVVEAE-LAAEHMKKALKKPHKYDPV 1186

Query: 1072 SHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDAL----------------------KDN 1109
               +    +   + +K + +++A   YI + P  L                         
Sbjct: 1187 LSVYTPSTHFGSMSEKYAKEIEA---YIEKNPSKLLADKKKKSKKHKSEAEAGAQEEAST 1243

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
             EK   +F   ++  + F  + K  +   L  PGE VGLLA+Q VGEPSTQMTLNTFH A
Sbjct: 1244 VEKL--RFAKEKLGVEAFRAMCKVLYHRGLVDPGEAVGLLAAQGVGEPSTQMTLNTFHFA 1301

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKT 1208
            G G  NVTLGIPRL+EI+  AS++IKTP++  P+L G T
Sbjct: 1302 GHGAANVTLGIPRLREIVMTASQNIKTPIMRLPVLDGIT 1340



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 2/93 (2%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    + C GHFGHI+L  PV++PL    ++ LL+  CF+CH F+AS   + K + +
Sbjct: 63  CSTCHLNSYQCSGHFGHIELPSPVFHPLFMGNMFNLLRGTCFYCHRFRASLVVLTKVIGR 122

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSN 93
           L L+  G +  A+++D + P   SN + SD+SN
Sbjct: 123 LRLLEYGLVDDAENIDAEEP--RSNAKFSDLSN 153


>gi|300797776|ref|NP_001179805.1| DNA-directed RNA polymerase I subunit RPA1 [Bos taurus]
 gi|296482516|tpg|DAA24631.1| TPA: DNA-directed RNA polymerase I subunit RPA1-like [Bos taurus]
          Length = 1717

 Score =  606 bits (1563), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 395/1096 (36%), Positives = 567/1096 (51%), Gaps = 176/1096 (16%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHIDL + VYNPLLF+ LY LL+  C  CH     R  V   + +
Sbjct: 64   CSTCVQDFTNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVVHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P   ++  +                     E 
Sbjct: 124  LRVLEVGALQAVYELERILYRFLEENADPTACEIQEE--------------------LEQ 163

Query: 118  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNG--MPHADIRANLIRG 175
             +++  +  L   Q  +++      C++K+  IS   F  +HM     PH          
Sbjct: 164  YTIKILQNNLPGSQGAQVKNV----CESKSKLIS--VFWKVHMTAKRCPH---------- 207

Query: 176  CNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQK 235
            C  G +    E    L                T+P       R  QK S   P G ++ +
Sbjct: 208  CKTGRSVVRKEHNSKLTI--------------TYPAM--VHRRADQKDSE--PQGIEEAQ 249

Query: 236  DLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKF 294
                G L PS  ++ +  LW+NE F L      ++  G   +   S+FFL  ++VPP ++
Sbjct: 250  MGKRGYLTPSSAQEHLIALWKNEGFFLNYLFLGLEDVGMESRFNPSMFFLDFLVVPPSRY 309

Query: 295  RLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKVI 337
            R  ++ GD +  + QTV L  V++  + +                 A     +  ++ + 
Sbjct: 310  RPVNRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQELPSEVAAPTTEEEKDSWMA 369

Query: 338  VAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFR 379
            + R                  W+ LQ  VN++FD +      +   GI Q+LEKK+GLFR
Sbjct: 370  MDRSFLSQLPGQSLTDRLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQILEKKDGLFR 429

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
            + +MGKRV+YA RSVI PD Y++ NEIGIP  FA +LTYP+ VTPWNV +LR ++ING  
Sbjct: 430  KHMMGKRVDYAARSVICPDMYISTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPN 489

Query: 440  IHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
            +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH+
Sbjct: 490  MHPGASMVINEDGSRTALSASDLTQREAVAKQLLT-------PATGAPKPQGTKIVCRHV 542

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            ++GD++L+NRQPTLH+PSI AH  RVL  EK LR+HYANC  YNADFDGDEMN HFPQ E
Sbjct: 543  KNGDILLLNRQPTLHRPSIQAHRARVLPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSE 602

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
            + RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F NR+++ +L++    
Sbjct: 603  LGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFNREQYMELVFR--- 659

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
                    T K G+  L            PAI KP PLWTGKQV++ +L +I        
Sbjct: 660  ------GLTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI-------- 695

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK---PGEE 734
                  +P+D      +                      K K G K  V E     PG  
Sbjct: 696  ------IPEDHIPLNLSG---------------------KAKIGGKAWVKESPRLVPGFN 728

Query: 735  KEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLS 792
             ++         + E +++I   +L+ GV+DKA +    YGLVH   E+YG  T+G +L+
Sbjct: 729  PDS---------MCESQVIIRAGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLT 779

Query: 793  ALSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEI 851
             L+RLFT +LQ++ GFT GV+D+L+    +  R   +  S   G R    AL L +    
Sbjct: 780  CLARLFTAYLQLYRGFTLGVEDILVKPKADVRRHGIIEDSTHCGPRAVRAALNLPEAVSC 839

Query: 852  DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
            D ++ K +     +   D  +   D+K   ++N H S+ +    +  GL +   +N + +
Sbjct: 840  DEVQGKWQDAHLSKDQRDFNM--IDLKFKEEVN-HYSNEINKACMPFGLHRQFPENNLQM 896

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            M  SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFL
Sbjct: 897  MVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFL 956

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            TG++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQ
Sbjct: 957  TGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQ 1016

Query: 1032 FCYGEDGVDVHQTSFI 1047
            F YGEDG+D+ +T F+
Sbjct: 1017 FLYGEDGLDIPKTQFL 1032



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 64/75 (85%)

Query: 1130 LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTI 1189
            L++ K+  SL  PGE VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +
Sbjct: 1195 LLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMV 1254

Query: 1190 ASKDIKTPVITCPLL 1204
            AS +IKTP+++ P+ 
Sbjct: 1255 ASSNIKTPMMSVPVF 1269


>gi|297266454|ref|XP_002808090.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Macaca mulatta]
          Length = 1722

 Score =  606 bits (1562), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 404/1106 (36%), Positives = 571/1106 (51%), Gaps = 176/1106 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P  S++  +                       
Sbjct: 124  LRVLEVGALQAVYELERILNRFLEENADPSASEIQEE----------------------- 160

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
              L+   A++     L  +     N C++K+   +   F   HMN    PH         
Sbjct: 161  --LEQYTAEIVQNNLLGSQGAHVKNVCESKSKLTA--VFWKAHMNAKRCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L                TFP      A   QK S   P G ++ 
Sbjct: 208  -CKTGRSVVRKEHNSKLTI--------------TFPAMVHRTA--GQKDSE--PLGIEEA 248

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L P+  ++ +  LW+NE F L    S M   G   +   S+FFL  ++VPP +
Sbjct: 249  QMGKRGYLTPTSAREHLFALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSR 308

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN--AYVNQ------------PDNAK---V 336
            +R  S+ GD +  + QTV L  V++  + +    A + Q            PD  K   +
Sbjct: 309  YRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVAAPPPDEEKDSLI 368

Query: 337  IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             + R                  W+ LQ  VN++FD +      D   GI Q+LEKKE LF
Sbjct: 369  AIDRSFLSTLPGQSFIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKERLF 428

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY--FALRLTYPERVTPWNVVKLRDSIIN 436
            R+ +MGKRV+YA RSVI  D Y+  NEIGIP +  FA +LTYP+ VTPWNV +LR ++IN
Sbjct: 429  RKHMMGKRVDYAARSVICXDMYINTNEIGIPHFQVFATKLTYPQPVTPWNVQELRQAVIN 488

Query: 437  GAEIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVY 494
            G  +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V 
Sbjct: 489  GPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLT-------PATGAPKPQGTKIVC 541

Query: 495  RHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFP 554
            RH+++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFP
Sbjct: 542  RHVKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFP 601

Query: 555  QDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYS 614
            Q E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y 
Sbjct: 602  QSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREQYMELVYR 661

Query: 615  SGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRP 674
                       T K G+  L            P+I KP PLWTGKQV++ +L +I     
Sbjct: 662  ---------GLTDKVGRVKLFP----------PSILKPFPLWTGKQVLSTLLINI----- 697

Query: 675  PFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEE 734
                     +P+D                N  GK   T K         KE     PG  
Sbjct: 698  ---------IPEDHIPL------------NLSGKAKITGK------AWVKETPRSVPGFN 730

Query: 735  KEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLS 792
             ++         + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+
Sbjct: 731  PDS---------MCESQVVIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLT 781

Query: 793  ALSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEI 851
             L+RLFT +LQ++ GFT GV+D+L+    + +R+  +  S   G R    AL L +    
Sbjct: 782  CLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPRAVRAALNLPEATSY 841

Query: 852  DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
            D ++ K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +
Sbjct: 842  DEVQGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQM 898

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            M  SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFL
Sbjct: 899  MVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFL 958

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            TG++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQ
Sbjct: 959  TGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQ 1018

Query: 1032 FCYGEDGVDVHQTSFIS--KFDALAA 1055
            F YGEDG+D+ +T F+   +F  LA+
Sbjct: 1019 FLYGEDGLDIPKTQFLQPKQFPFLAS 1044



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 81/114 (71%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL +PGE VGLLA+QS
Sbjct: 1161 VSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 1220

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L  K
Sbjct: 1221 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTK 1274


>gi|443894484|dbj|GAC71832.1| RNA polymerase I, large subunit [Pseudozyma antarctica T-34]
          Length = 1797

 Score =  605 bits (1561), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 356/832 (42%), Positives = 477/832 (57%), Gaps = 134/832 (16%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYV------------- 328
            FF+  V VPP +FR  S  GD   E+ Q  LL+ VL+    + +                
Sbjct: 391  FFITAVAVPPTRFRPASIMGDMTFENSQNELLTNVLKTTFAIRDQITELARLTAKKDFPE 450

Query: 329  -------------------NQPDNAKVIVARWMNLQQSVNVLFDG-KNAAGQRD---MAS 365
                               ++ D  + ++   M LQ  VN   D  KN    R       
Sbjct: 451  LGPDASESDFRVAETQLIKSREDMRRKVLNSMMQLQVDVNSFIDSSKNPMPLRQGQLPPP 510

Query: 366  GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPW 425
            G+ Q LEKKEGLFR+ +MGKRVN+A RSVISPD  +  NEIG+PP FA +LTYPE VT  
Sbjct: 511  GVKQGLEKKEGLFRKHMMGKRVNFAARSVISPDVNIETNEIGVPPVFARKLTYPEPVTVH 570

Query: 426  NVVKLRDSIINGAEIHPGATHY---------LDKLSTMRLPPNKKMRISIGRKLDT---- 472
            NV  +R  +ING   +PGA            LDKLS        + R ++  +L T    
Sbjct: 571  NVQLMRQLVINGPFKYPGAVAIRSEDGTETQLDKLSV-------EERTALANQLLTPQEH 623

Query: 473  ----SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK 528
                 RG     G  +      K V RHL+DGD++L+NRQPTLH+PS+MAH  RVL GEK
Sbjct: 624  SSKQKRGTFAGLGSSTRTPIANKQVLRHLRDGDILLLNRQPTLHRPSMMAHKARVLVGEK 683

Query: 529  TLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQD 588
            T+RMHYANC++YNADFDGDEMN+HFPQ + +RAE Y + N +NQY+ P++G+PLR LIQD
Sbjct: 684  TIRMHYANCNSYNADFDGDEMNMHFPQSQAARAECYYVANTDNQYLTPTSGNPLRGLIQD 743

Query: 589  HIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPA 648
            H+V+   +T K+T   R E+ Q+LY +       G +TG  G RVL          + PA
Sbjct: 744  HVVAGVWMTSKNTLYTRAEYQQMLYGALRPE---GKYTG--GGRVLT---------VPPA 789

Query: 649  IWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
            + KPEPLWTGKQ+I+ VL ++                                      K
Sbjct: 790  LLKPEPLWTGKQIISTVLLNL--------------------------------------K 811

Query: 709  LSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQ 768
             +K + ++     K    + GK         + S+EK      ++I   +L++GV+DKA 
Sbjct: 812  PAKADGLNLTSKAKVAGRLWGK--------DHASEEK------VIIEDGELLQGVLDKAA 857

Query: 769  F--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKN 826
            F  + YGLVH + E+YGS TAG LLS LSRLFT FLQ + F+C +DDLL+ K+ +  R+ 
Sbjct: 858  FGASAYGLVHAIFEIYGSETAGKLLSVLSRLFTKFLQSNAFSCRMDDLLLSKEGDEVRRK 917

Query: 827  HLHGSEEIGKRVHLEALELEDGAEIDP---IKLKSEIEKAMRGGGDAAVAYFDMKMTSQL 883
             L+ ++  GK V ++ + LE   E +P     L+  +E+ +R   D  +A  D +M +  
Sbjct: 918  ALNAAKGEGKGVAMKTVGLEGEDENNPDTDRNLRIRLEEVLR--DDDKLAVLDGEMMNSS 975

Query: 884  NKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPR 943
            N  T S +I   L  GL +   +N + +MT SGAKGS VN  QIS  LGQQ LEG+RVP 
Sbjct: 976  NALT-SKIIESCLPSGLYRKFPENNMQMMTGSGAKGSAVNVSQISCLLGQQALEGRRVPL 1034

Query: 944  MVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYL 1003
            MVSGK+LPSF P++ + RAGGF+  RFLTG+RPQEY+FHCMAGREGL+DTAVKTSRSGYL
Sbjct: 1035 MVSGKSLPSFRPFETSTRAGGFVSGRFLTGIRPQEYFFHCMAGREGLIDTAVKTSRSGYL 1094

Query: 1004 QRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAA 1055
            QRCLIK+LE + I YD +VR+ADGSI+QF YGED +D  ++ ++ +FD  AA
Sbjct: 1095 QRCLIKHLEGVHIQYDNTVRNADGSILQFAYGEDALDTTKSKYLGQFDFTAA 1146



 Score =  106 bits (264), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 72/107 (67%), Gaps = 2/107 (1%)

Query: 1104 DALKDNAEKFADK--FLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQM 1161
            DA  ++  K A+K  F   ++  + F  + K  +   L  PGE VGLLA+Q VGEPSTQM
Sbjct: 1236 DADGNDDGKVAEKLRFAKEKLGVEAFRAMCKVLYHRGLVDPGEAVGLLAAQGVGEPSTQM 1295

Query: 1162 TLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKT 1208
            TLNTFH AG G  NVTLGIPRL+EI+  AS++IKTP++  P+L G T
Sbjct: 1296 TLNTFHFAGHGAANVTLGIPRLREIVMTASQNIKTPIMRLPVLEGIT 1342



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 87/195 (44%), Gaps = 41/195 (21%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    + CPGHFGHI+L  PV++PL    ++ LL+  CF+CH F+AS   + K + +
Sbjct: 63  CATCHLNSYQCPGHFGHIELPSPVFHPLFMGNMFNLLRGTCFYCHRFRASLPVLTKVIGR 122

Query: 61  LELIIKGDIIAAKSLDLDLPS-------------ESSNPEDSDVSNKSSCSMV------- 100
           L L+  G +  A+++D + P              E++N EDSD  N +            
Sbjct: 123 LRLLEYGLVDDAENIDAEEPRSYTKFSDLNNEEFETAN-EDSDPENTAPKKSSSSKPEKS 181

Query: 101 ----TPRGNYD----NVRNLKPQ-----------EWTSLQFAEAKLALLQFLK-IETTKC 140
               TP    D     V+ L  Q           E  SL +   K  +  F+K I   +C
Sbjct: 182 SAGETPAEFADRINKQVKELIKQAKASGKATYEPEAGSLAYTLRKKCMNDFMKEIHKKRC 241

Query: 141 GNCKAKNPRISKPTF 155
           G C A +P + +  F
Sbjct: 242 GQCNAISPNVRRDGF 256


>gi|406695191|gb|EKC98503.1| hypothetical protein A1Q2_07185 [Trichosporon asahii var. asahii CBS
            8904]
          Length = 1052

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 393/1077 (36%), Positives = 569/1077 (52%), Gaps = 183/1077 (16%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C+TCGQ  F CPGH+GHI+L  PV++PL  N  Y LL+  C +CHHFK     + + + +
Sbjct: 63   CETCGQSYFACPGHYGHIELPSPVFHPLFMNQCYNLLRATCLYCHHFKMPELILRRYIAR 122

Query: 61   LELIIKGDIIAAKSL------DLDLPSESSNPEDSD--VSNKSSCSMVTPRGNYDNVRNL 112
            L L+  G +  A ++        D P +    ED D  V+ +++   +     Y  VR +
Sbjct: 123  LRLLDAGCLEEAHTVANFHPVTKDAPKDGDTQEDMDAGVAGETAAEFIQRMDEY--VRQV 180

Query: 113  ---------KPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKP-TFGWIHMNG 162
                     +      L F E K  L +F K    KC +C+A      K  T   I  + 
Sbjct: 181  LKHRKRKHERDNYKDGLVFEERKRVLNEFGKKLWAKCSHCQAYGNTFRKEKTIKIIEYDL 240

Query: 163  MPHADIRANLIRGCNLGETFSG--------GEEEKDLGASSDVDAPETHSFN-------- 206
             P   +  + +       +FS         G+EE+D G  +   +  + + +        
Sbjct: 241  SPKQKLANSTMGLKKPHASFSSRSIKKPQKGKEEEDEGIEASSASSGSEAEDEGMDVDEV 300

Query: 207  ------------GTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKL 254
                        G   G   TA       SG V     + + + +     ++V+  + +L
Sbjct: 301  EAEEEESEEEDEGLTAGPARTA-------SGQVKGARGRNERVMAA----AEVRSHLRRL 349

Query: 255  WENEFELCSFISDMQQQGFGKKAGH-------SIFFLGVVLVPPIKFRLPSKGGDSVMEH 307
            ++ E E CS +   +  G   K+GH        +FF+ VV VPP +FR P+K GD + E+
Sbjct: 350  FQKEAEACSLLYG-RHGGPQAKSGHIPPPPIADMFFMDVVPVPPTRFRPPAKMGDDLFEN 408

Query: 308  PQTVLLSKVLQA--NIYLANAYV-------------------NQPDNAKVIVARWMNLQQ 346
             Q  LL+ ++     IY  N  +                   ++  + ++++   + LQ 
Sbjct: 409  SQNTLLTAIINTCERIYTVNQTLRDFERQDKSEAVMEALKNLDKTRSFEILLESLIRLQH 468

Query: 347  SVNVLFDG-KNAAGQRD---MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLA 402
             VN   D  KN A  +       G+ QLLEKKEGLFR+ +MGKRVNYA RSVISPD  + 
Sbjct: 469  DVNSFMDSTKNPAVMKQGKLPPQGVKQLLEKKEGLFRKHMMGKRVNYAARSVISPDINIE 528

Query: 403  VNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM 462
             NEIGIPP FA +LTYPE VTP NV ++R  +ING ++HPGA    ++  +         
Sbjct: 529  TNEIGIPPVFAKKLTYPEPVTPQNVHEMRQLVINGPKVHPGAALVQNEDGS--------- 579

Query: 463  RISIGRKLDTSRGAI----VQPGKDSDNEFEG------KMVYRHLQDGDVVLVNRQPTLH 512
            +IS+ R     R AI    + P  D+     G      K VYRH++DGD+V++NRQPTLH
Sbjct: 580  QISLDRTTLEQRTAIANQLLTPQNDAWAGSSGGPAARNKKVYRHIRDGDIVILNRQPTLH 639

Query: 513  KPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQ 572
            KPS+M H V+VL GEKT+RMHYANC++YNADFDGDEMN+HFPQ+E +RAEA  I N +NQ
Sbjct: 640  KPSMMCHRVKVLHGEKTIRMHYANCNSYNADFDGDEMNIHFPQNETARAEAQMIANTDNQ 699

Query: 573  YVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQR 632
            Y+ P++G+PLR LIQDH+V+   +  K +F  RDE+ QL+Y +  + +   +++G  G R
Sbjct: 700  YLVPTSGNPLRGLIQDHVVAGVWMCNKSSFFTRDEYYQLIYGALRTEN---NYSG--GGR 754

Query: 633  VLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 692
            ++          L PAI KP P+WTGKQ+++ +L ++T                      
Sbjct: 755  IIT---------LPPAIIKPRPMWTGKQIMSTILVNLTPA-------------------- 785

Query: 693  FNADKQSDRKKNDKG-KLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEK 751
                       N KG  L+  NK+                 + K  +++ SK++ +SEE 
Sbjct: 786  -----------NAKGLNLTSKNKV-----------------QNKLWQRDDSKDENMSEEN 817

Query: 752  LLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTC 809
            ++     L+ GV+DK+Q+  + YGLVH+V ELYG   A  LL+ LSRL T +LQ  GF+C
Sbjct: 818  VIFLDGHLILGVLDKSQYGASAYGLVHSVHELYGPYIANRLLAVLSRLLTKYLQHTGFSC 877

Query: 810  GVDDLLILKDKERERKNHLHGSEEIGKRVHLEALEL-EDGAEIDP---IKLKSEIEKAMR 865
             +DDL++ ++ ER RK  L  + E G R  L+ + L  DG   +P     LK  +E+ +R
Sbjct: 878  RMDDLILSEEGERLRKQILDDANEDGMRTALQFVGLPHDGDIHNPELQQNLKIRLEEILR 937

Query: 866  GGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQ 925
               D  +A  D KM    NK T+S + N++L   L++P   N + +MT SGAKGSKVN  
Sbjct: 938  --DDNLMAGLDAKMQMAFNK-TTSKINNDVLPAHLVRPFPDNNMQMMTISGAKGSKVNAS 994

Query: 926  QISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            QIS+ LGQQ LEG+RVP MVSGKTLP+F  +D   RAGG++ +RFLTG+RPQEYYFH
Sbjct: 995  QISTLLGQQALEGRRVPTMVSGKTLPAFKAFDTQARAGGYVANRFLTGIRPQEYYFH 1051


>gi|338714112|ref|XP_001916227.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1 [Equus caballus]
          Length = 1720

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 400/1112 (35%), Positives = 573/1112 (51%), Gaps = 190/1112 (17%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   V +
Sbjct: 64   CSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G +     L+  L     E+S+P   ++  +                       
Sbjct: 124  LRVLEVGALQGVYELERILNRFLEENSDPTAFEIQEE----------------------- 160

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
              L+    K+     L        N C++++  I+   F   HM     PH         
Sbjct: 161  --LEQYTTKIVQNNLLGSHGAHVKNVCESRSKLIA--YFWKAHMTAKRCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGS--GAVPSGFK 232
             C  G +    E    L                T+P      A  H+K       P G +
Sbjct: 208  -CKTGRSVVRKEHNSKLTI--------------TYP------AMXHRKADQKDTEPPGIE 246

Query: 233  KQKDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPP 291
            + +    G L P+  ++ +  LW+NE F L      ++  G   +   S+FFL  ++VPP
Sbjct: 247  EAQMGKRGYLTPTSAREHLITLWKNEGFFLNYLFLGLEDVGMESRFNPSMFFLDFLVVPP 306

Query: 292  IKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNA 334
             ++R  S+ GD +  + QTV L  V++  + +                 A +  ++  ++
Sbjct: 307  SRYRPVSRLGDQMFTNGQTVNLQAVMKDMVLIRKLLALMAQEQELPCNVAASAAHEEKDS 366

Query: 335  KVIVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEG 376
             + V R                  W+ LQ  VN++FD +      +   GI Q+LEKK+G
Sbjct: 367  SMPVDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQILEKKDG 426

Query: 377  LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
            LFR+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++IN
Sbjct: 427  LFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVIN 486

Query: 437  GAEIHPGATHYLDK------LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
            G  +HPGA+  +++      LS + L      R ++ ++L T       P   +      
Sbjct: 487  GPNVHPGASMVINEDGSRTALSAVDL----TQREAVAKQLLT-------PATGAPKPQGT 535

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
            K+V RH+++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN
Sbjct: 536  KIVCRHVKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMN 595

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
             HFPQ E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +
Sbjct: 596  AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYME 655

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            L+Y            T K G+  L S          PAI KP PLWTGKQV++ +L +I 
Sbjct: 656  LVYR---------GLTDKVGRVKLFS----------PAILKPFPLWTGKQVVSTLLINI- 695

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKK--KEVVE 728
                         +P+D      +           K K+          SGK   KE   
Sbjct: 696  -------------IPEDCIPLNLSG----------KAKI----------SGKAWVKEPPR 722

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNT 786
              PG   ++         + E +++I   +L+ GV+DKA +    YGLVH   E+YG  T
Sbjct: 723  PVPGFHPDS---------MCESQVIIRAGELLCGVLDKAHYGSSAYGLVHCCYEIYGGET 773

Query: 787  AGTLLSALSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALEL 845
            +G +L+ L+RLFT +LQ++ GFT GV+D+L+    +  R+  +  S   G R    AL L
Sbjct: 774  SGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVRRRRIVEESTHCGPRAVRAALNL 833

Query: 846  EDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTG 905
             + A  D ++ K   + A  G         D+K   ++N H S+ +    +  GL +   
Sbjct: 834  PEAASCDEVREK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFP 890

Query: 906  KNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGF 965
            +N + +M  SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF
Sbjct: 891  ENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGF 950

Query: 966  IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDA 1025
            +  RFLTG++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+
Sbjct: 951  VTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDS 1010

Query: 1026 DGSIVQFCYGEDGVDVHQTSFIS--KFDALAA 1055
            DGS+VQF YGEDG+D+ +T F+   +F  LA+
Sbjct: 1011 DGSVVQFLYGEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  113 bits (282), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 79/114 (69%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D   + A +    +  +E++      L++ K+  +L  PGE VGLLA+QS
Sbjct: 1159 VSETFEKKVDDYSHEWASQAERSYEKSELSLDRLRTLLQLKWQRALCDPGEAVGLLAAQS 1218

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L  K
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTK 1272


>gi|311252217|ref|XP_003124986.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Sus scrofa]
          Length = 1719

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 400/1107 (36%), Positives = 565/1107 (51%), Gaps = 180/1107 (16%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    CPGH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCVQDFNNCPGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+ +P  S++  +                       
Sbjct: 124  LRVLEVGALQAVYELERILYRFLEENPDPTASEIQEE----------------------- 160

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
              L+   A +     L    +   N C++++  I+  +F   HM     PH         
Sbjct: 161  --LEQYTATIVQNNLLGSHGSHVKNVCESRSKLIA--SFWKAHMTAKRCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
             C  G +    E    L                T+P        R      A P G ++ 
Sbjct: 208  -CRTGRSVVRKEHNSKLTI--------------TYPAM----VHRKADQKDAEPQGIEEA 248

Query: 235  KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
            +    G L P   +D +  LW+NE F L      ++  G   +   S+FFL  ++VPP +
Sbjct: 249  QMGKRGYLTPLSAQDHLIALWKNEGFFLNYLFLGLEDVGLESRFNPSMFFLDFLVVPPSR 308

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN--AYVNQ------------PDNAK---- 335
            +R  ++ GD +  + QTV L  V++  + +    A + Q            PD  K    
Sbjct: 309  YRPVNRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQELPCEVAAPAPDEEKDSST 368

Query: 336  -----------------VIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
                              +   W+ LQ  VN++FD +      +   GI Q+LEKK+GLF
Sbjct: 369  AMDRSFLSLLPGQSLTDRLYNIWIRLQSHVNIVFDSEMDKLTMEKYPGIRQILEKKDGLF 428

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 429  RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 488

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 489  TVHPGASMVINEDGSRTALSASDLTQREAVAKQLLT-------PATGAPKPQGTKIVCRH 541

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 542  VKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 601

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y   
Sbjct: 602  ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYR-- 659

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                     T K G+  L            PAI KP PLWTGKQV++ +L +I       
Sbjct: 660  -------GLTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI------- 695

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK---PGE 733
                   +P+D                         N + K K G K  V E     PG 
Sbjct: 696  -------IPEDQI---------------------PLNLLGKAKIGGKAWVKEAPRPVPGF 727

Query: 734  EKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLL 791
                         + E +++I   +L+ GV+DKA +    YGLVH   E+YG  T+G +L
Sbjct: 728  NPNL---------MCESQVVIRDGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVL 778

Query: 792  SALSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAE 850
            + L+RLFT +LQ++ GFT GV+D+L+    +  R   +  S   G R    AL L + A 
Sbjct: 779  TCLARLFTAYLQLYRGFTLGVEDILVKPRADVRRHRIIEESTRCGPRAVRAALNLPEAAS 838

Query: 851  IDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS 910
             D ++ K +     +   D  +   D+K   ++N H S+ +    +  GL +   +N + 
Sbjct: 839  CDEVRGKWQDAHLSKDQRDFNM--IDLKFKEEVNHH-SNEINKACMPLGLHRQFPENNLQ 895

Query: 911  LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRF 970
            +M  SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RF
Sbjct: 896  MMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRF 955

Query: 971  LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIV 1030
            LTG+RP E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+V
Sbjct: 956  LTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVV 1015

Query: 1031 QFCYGEDGVDVHQTSFIS--KFDALAA 1055
            QF YGEDG+D+ +T F+   +F  LA+
Sbjct: 1016 QFLYGEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/95 (60%), Positives = 74/95 (77%), Gaps = 3/95 (3%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            AEK  +K   +E++ +    L++ K+  SL  PGE VGLLA+QS+GEPSTQMTLNTFH A
Sbjct: 1178 AEKSHEK---SELSLERLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFA 1234

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            GRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+ 
Sbjct: 1235 GRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF 1269


>gi|260798706|ref|XP_002594341.1| hypothetical protein BRAFLDRAFT_201044 [Branchiostoma floridae]
 gi|229279574|gb|EEN50352.1| hypothetical protein BRAFLDRAFT_201044 [Branchiostoma floridae]
          Length = 1731

 Score =  603 bits (1554), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 355/851 (41%), Positives = 483/851 (56%), Gaps = 107/851 (12%)

Query: 239  SGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS 298
            SG L P + +  +  LW+ E EL S +    +          IFFL V+ VPP +FR  S
Sbjct: 262  SGYLTPYEARAHLRALWKKEGELLSNLFGALRLVPQGTCPIDIFFLEVLPVPPSRFRPVS 321

Query: 299  KGGDSVMEHPQTVLLSKVLQANIYL-----------ANAYVNQPDNAKVIVA-------- 339
              GD   E+ QT  L+KVL   + +           A +      N  +++         
Sbjct: 322  VLGDKRFENAQTSNLAKVLAECVVVRKLLQEMGKEEAESTKTGKVNTILLIVFGFYTQTI 381

Query: 340  ---------------RWMNLQQSVNVLFDGKNAAGQRDMASGICQ--LLEKKEGLFRQKL 382
                            W+ LQ SVN + D        D + GI Q  L+EKK+GLFR+ +
Sbjct: 382  LDEISGTTVTEKVNNTWLRLQASVNRVVDSDLDKLSNDKSPGIKQVLLIEKKDGLFRKHM 441

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
            MGKRV+YA RSVISPDPY+ ++EIGIP  FA +LTYP+ VT WNV +LR ++ING  +HP
Sbjct: 442  MGKRVDYAARSVISPDPYINMDEIGIPLVFATKLTYPQPVTTWNVRELRQAVINGPNVHP 501

Query: 443  GATHYLDK--LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDG 500
            GA   +++    T+    +   R +I ++L T       P          K+V+RH+++G
Sbjct: 502  GAAFVVNENGHKTVLSVSDPTQREAIAKQLLT-------PSSYPGAAMGTKIVHRHIKNG 554

Query: 501  DVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSR 560
            DV+L+NRQPTLHKPSIMAH  R+L GEKTLR+HYANC TYNADFDGDEMN HFPQ+E+ R
Sbjct: 555  DVLLLNRQPTLHKPSIMAHKARILPGEKTLRLHYANCKTYNADFDGDEMNAHFPQNELGR 614

Query: 561  AEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSS 620
            AEAY I + + QY+ P +G PL  LIQDH+VS   +T +  F  R+E+ QL++S+     
Sbjct: 615  AEAYAIASTDQQYLGPKDGKPLSGLIQDHMVSGVTMTLRGRFFAREEYHQLVFSA----- 669

Query: 621  GLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI-TAVLNHITRGRPPFVVE 679
                 T K G   L          L P+I KP  LW+GKQV+ T +LN I  G+ P  ++
Sbjct: 670  ----LTDKQGHVRL----------LPPSIVKPRILWSGKQVVSTVLLNIIPEGKAPLNMD 715

Query: 680  RGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEK 739
               K+                      GKL  T      +SG +                
Sbjct: 716  SKAKI---------------------SGKLWTTAPSRASRSGVRP--------------- 739

Query: 740  NKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRL 797
               ++ E+ E +++I +  L+ G++DK  +    YGLVH   ELYG   +  LL+ L RL
Sbjct: 740  --LRDGEMCESQVIIRQGQLLCGILDKGHYGPTPYGLVHCCSELYGGKVSSRLLTCLGRL 797

Query: 798  FTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKL 856
            FT FLQ H GFT GV+D+L+ +  + +R+  +  +   G      AL ++   +I+   L
Sbjct: 798  FTTFLQNHLGFTLGVEDILLTQKADVKRREIMTAAAHCGDDAAARALGMDISVKIETDTL 857

Query: 857  KSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSG 916
            K  ++ A     D  +  +DM M S+ ++  S+ +       GLLK    N + LM  SG
Sbjct: 858  KEALQTAHFSPDDQDMKEWDMAMKSKTDQF-SNDINKACTPNGLLKMFPHNNLQLMVQSG 916

Query: 917  AKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRP 976
            AKGS VN  QISS LGQ ELEG+R P M SG +LPSF P+D +PRAGGF+  RFLTG+RP
Sbjct: 917  AKGSSVNCMQISSLLGQIELEGRRPPLMPSGSSLPSFLPYDTSPRAGGFVDGRFLTGIRP 976

Query: 977  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE 1036
            QEY+FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L I+YD +VRD+DGS++QF YGE
Sbjct: 977  QEYFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVINYDLTVRDSDGSLIQFYYGE 1036

Query: 1037 DGVDVHQTSFI 1047
            DG+D+ +T F+
Sbjct: 1037 DGLDIPKTQFL 1047



 Score =  123 bits (308), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 63/112 (56%), Positives = 82/112 (73%), Gaps = 3/112 (2%)

Query: 1093 DASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQ 1152
            D  N Y+   P  L  + E+ +D   S+EM    F  ++++K++ SL +PGE VGLLA+Q
Sbjct: 1185 DILNEYVATNPMGLP-SEEEVSDG--SDEMTIDRFHAMMQYKYMRSLVEPGEAVGLLAAQ 1241

Query: 1153 SVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            S+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP +  PL+
Sbjct: 1242 SIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPTMEVPLV 1293



 Score = 70.5 bits (171), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q    CPGH GH++L +PV+NPL   LLY +L+  CF+CH     + + +    +
Sbjct: 63  CGTCAQNYLHCPGHMGHVNLPLPVFNPLFLRLLYQMLRGSCFYCHRLMCPKIQAQLITSQ 122

Query: 61  LELIIKGDIIAAKSL 75
           L+ +  G +   + L
Sbjct: 123 LKALDHGMVQMVEKL 137


>gi|45181579|gb|AAS55440.1| RNA polymerase I largest subunit [Amborella trichopoda]
          Length = 542

 Score =  602 bits (1553), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 318/616 (51%), Positives = 412/616 (66%), Gaps = 80/616 (12%)

Query: 549  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
            MNVHFPQDE++RAEAYNIVNAN QY+ P++G+P+R LIQDHIVSA LLTKKDTFL ++E+
Sbjct: 1    MNVHFPQDEIARAEAYNIVNANEQYIVPTSGEPIRGLIQDHIVSAVLLTKKDTFLTQEEY 60

Query: 609  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
              LLYS+ VS+       G   +++ + +S++E+ PLLPAIWKP+PLWTGKQVI+ +L+H
Sbjct: 61   HHLLYSACVSTVAPDFKHGNLSKKISLVKSDEEISPLLPAIWKPKPLWTGKQVISTILDH 120

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
            +TRG+PPF V+R G++P  +F                               GKK     
Sbjct: 121  VTRGQPPFTVKRAGRIPAGYF-------------------------------GKKN---- 145

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAG 788
                                E K+L++KN+LV GVIDKAQF  +GLVH V ELYG++ AG
Sbjct: 146  -------------------GEYKVLVHKNELVHGVIDKAQFGKFGLVHAVHELYGASAAG 186

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
             L S  +RLFT +LQMHGFTCGVDDLL+ +  E +R+  L  SE IG  VH   +  +D 
Sbjct: 187  RLFSVFTRLFTAYLQMHGFTCGVDDLLVRQCAEMDRRRKLDESETIGDHVHSWFIGAKD- 245

Query: 849  AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNW 908
            AE+DPI++++ I K +RG G++A+A  D  M+S LN+ TS  V N L  EGL K    N 
Sbjct: 246  AEMDPIRMQAAIGKLVRGKGESAIARLDRMMSSALNRLTSE-VNNSLFPEGLSKSFPSNC 304

Query: 909  ISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIID 968
            +SLMT+SGAKG  VNF QISS LGQQELEGKRVPRMVSGKTLP F PWD A RAGG I D
Sbjct: 305  LSLMTSSGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFLPWDSAARAGGSISD 364

Query: 969  RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGS 1028
            RFL GLRPQEYYFHCMAGREGLVDTA+KT+RSGYLQR L+KNLECL+++YD++VRD+DGS
Sbjct: 365  RFLNGLRPQEYYFHCMAGREGLVDTAIKTARSGYLQRRLMKNLECLRVNYDHTVRDSDGS 424

Query: 1029 IVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKC 1088
            I++F YGEDGVDV +TS++++F  LAA             +K + +  +G +Q  +    
Sbjct: 425  IIEFIYGEDGVDVVKTSWLTEFKFLAA-------------NKKTLSARLGVHQ--LEDAL 469

Query: 1089 SGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAK------QDFLKLVKHKFVLSLAQP 1142
              + D   +YI +LPDAL++   KF +K    +         + F  L+K K+  SLAQP
Sbjct: 470  PSEYD---SYIKDLPDALEEKMNKFIEKLSKKKRDSLHLRKLKHFRNLLKLKYFSSLAQP 526

Query: 1143 GEPVGLLASQSVGEPS 1158
            GE VG++A+QS+GEPS
Sbjct: 527  GEAVGVIAAQSIGEPS 542


>gi|321464634|gb|EFX75641.1| hypothetical protein DAPPUDRAFT_323145 [Daphnia pulex]
          Length = 1740

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 393/1093 (35%), Positives = 577/1093 (52%), Gaps = 132/1093 (12%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC      CPGHFGHI L +P Y+PL    +  ++K  C  C  F    ++    V +
Sbjct: 64   CPTCSLGMLHCPGHFGHIALPLPCYHPLFLRNVVAIMKMTCPVCKTFAIPEKDKLVLVGQ 123

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNP--EDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWT 118
            L+L+  G II A +L      + + P  ED D  +  +  +     N + +  L+     
Sbjct: 124  LQLLKYGLIIDAHNL-----WQKTKPTVEDYDEDDGKATQL-----NEEQLDELRVNIEE 173

Query: 119  SLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNL 178
             ++ A+    +          CG+       +      ++ +  +     +    +GC  
Sbjct: 174  EIKRAKEDAGI---------TCGDNPPPTRHVENMKMEFLKLFMLKFKTGKKKCAQGCKG 224

Query: 179  GETFSGGEEEKDLGASSDVDAPETHSFNGTF---PGTQDTAARRHQKGSGAVPSGFKKQK 235
            G  F   ++ +     S      T S  G     P   +          G  PS  K+ K
Sbjct: 225  G--FERIQQYRSRIVYSLRHDTPTTSLGGNMMINPVEFEEDLEDEDDVEGKTPSKHKR-K 281

Query: 236  DLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGH--SIFFLGVVLVPPIK 293
               +  + P D +D++  LWEN+ EL      M    F     +   +FFL V+ V P K
Sbjct: 282  PRATMYVTPKDARDLLRLLWENDKEL---FGQMYPVLFKTNIDYPTDVFFLEVISVMPSK 338

Query: 294  FRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYV--------NQPDNAKVIV------- 338
            FR  +  G  + ++ QT +L K++Q    +  A          N P+++K  +       
Sbjct: 339  FRPVNIVGGIMSDNKQTAVLRKIVQDTYVVKTALFCHEQKTMDNVPEDSKRFLKSLQGET 398

Query: 339  ------ARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACR 392
                    W  LQ++VN++ D      +++M  G  Q+LEKKEGL R  +MGKRVN+A R
Sbjct: 399  LLEKLQTAWHALQENVNMIVDASTNKDEKNMI-GFKQILEKKEGLLRMNMMGKRVNFAAR 457

Query: 393  SVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLS 452
            SVI+PDP L V E+G+P  FA RLT+P  VT +NV ++RD++ NG  + PGATH  +   
Sbjct: 458  SVITPDPNLDVEEVGVPDCFAKRLTFPTPVTSFNVCEMRDAVRNGPNVWPGATHIEESNG 517

Query: 453  T-MRLPPN-KKMRISIGRKLDT-----SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLV 505
              + L PN +K R +I + L T     S+ A+ + G      F+ K+V+RHL+ GD++L+
Sbjct: 518  KKINLNPNDEKSRAAIAKTLLTPFEASSQAAVYEKGGKIRTLFKPKIVHRHLKTGDIMLL 577

Query: 506  NRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYN 565
            NRQPTLHKPS+MAH  RVL GEKTLR+HYANC  YNADFDGDEMN HFPQ EV+R+E YN
Sbjct: 578  NRQPTLHKPSMMAHKARVLMGEKTLRLHYANCKAYNADFDGDEMNAHFPQGEVARSEGYN 637

Query: 566  IVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLG-- 623
            I    +QY+ P +G PL  LIQDH+++   LT +  F NR ++ QL++      +GLG  
Sbjct: 638  IAAVPHQYLVPKDGTPLSGLIQDHMIAGVKLTMRGQFFNRTDYQQLVF------AGLGGR 691

Query: 624  SFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGK 683
             + GK            ++LP  P I KP  LW+GKQ+++ V+ ++T         +G K
Sbjct: 692  EYDGK-----------TKLLP--PTILKPVALWSGKQILSTVIINLT--------PKGKK 730

Query: 684  LPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSK 743
            L         N D  +     D   +                     P  + E    + +
Sbjct: 731  L--------INMDSTAKISVKDWQTV---------------------PVRKWEGGGTELQ 761

Query: 744  EKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVF 801
               ++E +++I   +L+ GV+DK  +    Y LVH   ELYG   +  LLS  +RLFT +
Sbjct: 762  GNSMTENEVVIQHGELLVGVLDKMHYGATSYSLVHLFNELYGGQYSCRLLSCFARLFTTY 821

Query: 802  LQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL-----ELE-DGAEIDPIK 855
            LQ+ GF+ GV+D+L+    +++R+  L   E +G  V  +A+     E+E  G EI   K
Sbjct: 822  LQLKGFSLGVEDILVTPRADKKRRKILKRLETVGDGVATKAVGVTPQEVEKSGMEIVRKK 881

Query: 856  LKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTS 915
            ++ EI  +       A+      +T Q+N   + + I      GL K    N ++LM  S
Sbjct: 882  MQ-EIHFSQNSLKKMAIDREYKGVTDQINNEVNRACI----PGGLHKLFPDNNLALMIQS 936

Query: 916  GAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLR 975
            GAKGS VN  QIS  LGQ ELEGKR P M+SG++LPSF  +D +PRAGGFI  RF+TG+R
Sbjct: 937  GAKGSSVNAMQISCLLGQIELEGKRPPLMISGRSLPSFVAFDTSPRAGGFISGRFMTGIR 996

Query: 976  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYG 1035
            PQE++FHCMAGREGL+DTAVKTSRSGYLQRCL+K+LE + ++YD +VRD+DG ++QF YG
Sbjct: 997  PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGVSVAYDGTVRDSDGLVLQFLYG 1056

Query: 1036 EDGVDVHQTSFIS 1048
            EDG+D+ ++ F++
Sbjct: 1057 EDGLDICKSQFLN 1069



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 69/83 (83%)

Query: 1122 MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIP 1181
            + K++  +LV +K V +  +PGEPVG+LA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIP
Sbjct: 1210 IGKKELTRLVYNKAVAASCEPGEPVGMLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIP 1269

Query: 1182 RLQEILTIASKDIKTPVITCPLL 1204
            RL+EIL +A+ +++TP +  P+L
Sbjct: 1270 RLREILMVAAANLQTPSMDIPIL 1292


>gi|426223541|ref|XP_004005933.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1 [Ovis aries]
          Length = 1720

 Score =  601 bits (1549), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 395/1106 (35%), Positives = 569/1106 (51%), Gaps = 178/1106 (16%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  V   + +
Sbjct: 64   CSTCVQDFTHCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVVHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E++NP   ++  +                     E 
Sbjct: 124  LRVLEVGALQAVYELERILYRFLEENANPTACEIQEE--------------------LEQ 163

Query: 118  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNG--MPHADIRANLIRG 175
             +++  +  L   Q  +++      C++++  IS   F  +HM     PH          
Sbjct: 164  YTIEILQNNLLGSQGAQVKNV----CESRSKLIS--VFWKVHMTAKRCPH---------- 207

Query: 176  CNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQK 235
            C  G +    E    L                T+P        R        P G ++ +
Sbjct: 208  CKTGRSVIRKEHNSKLTI--------------TYPAM----VHRRADQKDTEPQGIEEAQ 249

Query: 236  DLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKF 294
                G L PS  ++ +  LW+NE F L      ++  G   +   S+FFL  ++VPP ++
Sbjct: 250  MGKRGYLTPSSAQEHLIALWKNEGFFLNYLFLGLEDVGMESRFNPSMFFLDFLVVPPSRY 309

Query: 295  RLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKVI 337
            R  ++ GD +  + QTV L  V++  + +                 A     +  ++ + 
Sbjct: 310  RPVNRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQELPSEVAAPTTEEEKDSSMT 369

Query: 338  VAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFR 379
            + R                  W+ LQ  VN++FD +      +   GI Q+LEKK+GLFR
Sbjct: 370  MDRSFLSQLPGQSLTDRLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQILEKKDGLFR 429

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
            + +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING  
Sbjct: 430  KHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPN 489

Query: 440  IHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
            +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH+
Sbjct: 490  VHPGASMVINEDGSRTALSASDLTQREAVAKQLLT-------PATGAPKPQGTKIVCRHV 542

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            ++GD++L+NRQPTLH+PSI AH  RVL  EK LR+HYANC  YNADFDGDEMN HFPQ E
Sbjct: 543  KNGDILLLNRQPTLHRPSIQAHRARVLPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSE 602

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
            + RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F +R+++ +L+Y    
Sbjct: 603  LGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFSREQYMELVY---- 658

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
               GL    G+            ++LP  PAI KP PLWTGKQV++ +L +I        
Sbjct: 659  --RGLTDKVGR-----------VKLLP--PAILKPFPLWTGKQVVSTLLINI-------- 695

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK---PGEE 734
                  +P+D      +                      K K G K  V E     PG  
Sbjct: 696  ------IPEDHIPLNLSG---------------------KAKIGGKAWVKESPRLVPGFN 728

Query: 735  KEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLS 792
             ++         + E +++I   +L+ GV+DKA +    YGLVH   E+YG  T+G    
Sbjct: 729  PDS---------MCESQVIIRAGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRGAP 779

Query: 793  ALSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEI 851
             L+RLFT +LQ++ GFT GV+D+L+    +  R   +  S   G R    AL L + A  
Sbjct: 780  CLARLFTAYLQLYRGFTLGVEDILVKPKADVRRHGIVKESTHCGPRAVRAALNLPEAASC 839

Query: 852  DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
            D ++ K +     +   D  +   D+K   ++N H S+ +    +  GL +   +N + +
Sbjct: 840  DEVQGKWQDAHLNKDQRDFNM--IDLKFKEEVN-HYSNEINKACMPFGLHRQFPENNLQM 896

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            M  SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFL
Sbjct: 897  MVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFL 956

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            TG++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQ
Sbjct: 957  TGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQ 1016

Query: 1032 FCYGEDGVDVHQTSFIS--KFDALAA 1055
            F YGEDG+D+ +T F+   +F  LA+
Sbjct: 1017 FLYGEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 64/75 (85%)

Query: 1130 LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTI 1189
            L++ K+  SL  PGE VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +
Sbjct: 1195 LLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMV 1254

Query: 1190 ASKDIKTPVITCPLL 1204
            AS +IKTP+++ P+ 
Sbjct: 1255 ASANIKTPMMSVPVF 1269


>gi|351705321|gb|EHB08240.1| DNA-directed RNA polymerase I subunit RPA1 [Heterocephalus glaber]
          Length = 1715

 Score =  600 bits (1548), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 396/1112 (35%), Positives = 567/1112 (50%), Gaps = 185/1112 (16%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF  LY LL+  C  CH     R  +   V +
Sbjct: 64   CSTCVQDFNNCSGHLGHIELPLTVYNPLLFEKLYLLLRGSCLNCHMLTCPRAVIHLLVCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L+++  G + A   L+  L     E+ +P   ++  +                       
Sbjct: 124  LKVLEVGALQAVYELEQILTRFLEENGDPSGFEIQEE----------------------- 160

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
              L+   AK+    FL  +     N C++++  I+   F   HM     PH         
Sbjct: 161  --LEQYVAKIVQNNFLGAQGAHVKNVCESRSKLIA--YFWKAHMTAKRCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAV--PSGFK 232
             C  G +    E    L                T+P      A  H+K    +  P G +
Sbjct: 208  -CKTGRSVVRKEHNSKLTV--------------TYP------AVVHKKSDQKITEPLGIE 246

Query: 233  KQKDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPP 291
            + +    G L PS  ++ +  +W+NE F L      +   G   +   S+FFL  ++VPP
Sbjct: 247  EAQMGKRGYLTPSSAQEHLGAIWKNEGFFLNYLFLGLDDVGMESRFNPSVFFLDFIVVPP 306

Query: 292  IKFRLPSKGGDSVMEHPQTVLLSKVLQ-----------------ANIYLANAYVNQPDNA 334
             ++R  ++ GD +  + QTV L  V++                   I +A    ++  ++
Sbjct: 307  SRYRPVNRLGDQMFTNGQTVNLQAVMKDIVLIRKLLALMAQEQKLPINVAALATDEEKDS 366

Query: 335  KVIVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEG 376
             V++ R                  W+ LQ  VN++FD +      +   GI Q+LEKKEG
Sbjct: 367  SVVMDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKFPGIRQILEKKEG 426

Query: 377  LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
            LFR+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++IN
Sbjct: 427  LFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVIN 486

Query: 437  GAEIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVY 494
            G  +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V 
Sbjct: 487  GPNVHPGASMVINEDGSRTALSAVDVAQREAVAKQLLT-------PATGAPKPQGTKIVC 539

Query: 495  RHLQDGDVVLV-----NRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            RH+++GD++L+     NRQPTLH+PSI AH+ R+L  EK LR+HYANC  YNADFDGDEM
Sbjct: 540  RHVKNGDILLLXXXXXNRQPTLHRPSIQAHLARILPEEKVLRLHYANCKAYNADFDGDEM 599

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N HFPQ E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ 
Sbjct: 600  NAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYM 659

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL-NH 668
            +L+Y            T K G   L            PAI KP PLWTGKQV++ +L N 
Sbjct: 660  ELVYR---------GLTDKVGHVKLFP----------PAILKPFPLWTGKQVVSTLLINI 700

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
            I     P  +    K+P                                      K  ++
Sbjct: 701  IPENYVPLNLSGKAKIP-------------------------------------GKAWIQ 723

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNT 786
            G P        +      + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T
Sbjct: 724  GTPRPAPNFNPDL-----MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGET 778

Query: 787  AGTLLSALSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALEL 845
            +G +L+ L+RLFT +LQ++ GFT GV+D+L+    ++ R   +  S + G R    AL L
Sbjct: 779  SGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADKTRHQIIEESTQCGPRAVRAALNL 838

Query: 846  EDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTG 905
             + A  D ++ K   + A  G         D+K   ++N H S+ +    +  GL +   
Sbjct: 839  PETASCDEVRGK--WQDAHLGKDQRDFNVIDLKFKEEVN-HYSNEINKACMPLGLHRQFP 895

Query: 906  KNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGF 965
            +N + +M  SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F  +++ PRAGGF
Sbjct: 896  ENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEAYEFTPRAGGF 955

Query: 966  IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDA 1025
            I  RFLTG++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+
Sbjct: 956  ITGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDS 1015

Query: 1026 DGSIVQFCYGEDGVDVHQTSFIS--KFDALAA 1055
            DGS++QF YGEDG+D+ +T F+   +F  LA+
Sbjct: 1016 DGSVIQFLYGEDGLDIPKTPFLQPKQFPFLAS 1047



 Score =  113 bits (283), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 78/111 (70%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL  PGE VGLLA+QS
Sbjct: 1164 VSETFEKKVDDYSQEWAAQAEKSYEKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQS 1223

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+ 
Sbjct: 1224 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF 1274


>gi|307202220|gb|EFN81707.1| DNA-directed RNA polymerase I subunit RPA1 [Harpegnathos saltator]
          Length = 1687

 Score =  599 bits (1545), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 345/842 (40%), Positives = 490/842 (58%), Gaps = 109/842 (12%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFIS---DMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS 298
            ++P   K+ + KLW NE +    I    D+    +       +FFL V+ V P   R  +
Sbjct: 248  IMPDQSKEYLRKLWNNEKDFLKLIIPCLDLMDIEYPT----DVFFLEVIPVLPPIVRPVN 303

Query: 299  KGGDSVMEHPQTVLLSKVLQANIYLANAY-------VNQ-PDNAKVIVAR---------- 340
                 V+EHPQT +   ++Q  + L N          +Q P   +++  +          
Sbjct: 304  ILHGQVIEHPQTQVYKNIMQDCLILRNIIQTIQDGGTDQLPQEGRLVFEQIRGLTAIEKL 363

Query: 341  ---WMNLQQSVNVLFDGKNAAGQRDM-ASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
               W  LQ +V+ L D + +     +   G+ Q++EKKEG+ R  +MGKRVN+A RSVI+
Sbjct: 364  HNAWQGLQVNVDHLMDREMSKTSESVHCQGLKQIIEKKEGIIRMHMMGKRVNFAARSVIT 423

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PDP L ++EIGIP  FAL+LTYP  VTPWNVV+LR  I+NG ++HPGA    ++   ++ 
Sbjct: 424  PDPNLNIDEIGIPEAFALKLTYPVPVTPWNVVELRRLILNGPDVHPGAVMVENEDGMIQ- 482

Query: 457  PPNKKMRISIGRKLDTSRGAIVQ----PGKDSDNEFEG-KMVYRHLQDGDVVLVNRQPTL 511
                    +I     T R A+ +        ++  F G K++YRHLQ+GDV+L+NRQPTL
Sbjct: 483  --------AISSNDSTKREAVAKRLFTTNSRTNKFFSGIKVIYRHLQNGDVLLLNRQPTL 534

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HKPSIMAH  R+LKGEKTLR+HYANC  YNADFDGDEMN HFPQ+E++R+E+YNIV+ +N
Sbjct: 535  HKPSIMAHKARILKGEKTLRLHYANCKAYNADFDGDEMNAHFPQNELARSESYNIVSVSN 594

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
            QY+ P +G PL  LIQDH+VS   LT +  F +R ++ QL+Y++                
Sbjct: 595  QYLVPKDGTPLSGLIQDHMVSGVRLTSRGRFFSRADYTQLVYTA---------------- 638

Query: 632  RVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKT 691
               +S  + +++ L PAI KP+  W+GKQ+++ V+ +I  G                 K 
Sbjct: 639  ---LSMKQGDIILLPPAIIKPKLQWSGKQILSTVIINIIPGN----------------KA 679

Query: 692  RFNADKQSDRKKNDKGKLS--KTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSE 749
            R N         N K  L   + N+  + K GK+ +                   K +SE
Sbjct: 680  RINL------TSNTKISLKEWQVNEPRRWKCGKEFD-----------------DPKTMSE 716

Query: 750  EKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             +++I   +L+ GV+DK  +    YGL+H + ELYG   A  +LSA  +LF  FLQ +GF
Sbjct: 717  MEVIIRHGELLCGVLDKMHYGATPYGLIHCIYELYGGTCASKMLSAFGKLFQAFLQWNGF 776

Query: 808  TCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGG 867
            T G++D+LI ++ + +RK  +  S+ IG  +   A+EL D   +D +++K+E        
Sbjct: 777  TLGIEDILITREADEKRKEIISNSKIIGSSIQRSAVELSDDTPMDEVRVKTEESYWSNSK 836

Query: 868  GDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQI 927
              A V   D K  + L+ +T + +    L  GL K    N + LM  SGAKGS VN  QI
Sbjct: 837  FRAQV---DRKYKNMLDVYT-NDINKTCLPMGLSKKFPDNNLQLMVQSGAKGSTVNTMQI 892

Query: 928  SSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGR 987
            S  LGQ ELEGKR P M+SGK+LPSF  +D  PRAGG+I+ RF+TG++ QE++FHCMAGR
Sbjct: 893  SCLLGQIELEGKRPPLMISGKSLPSFQAYDSTPRAGGYIVGRFMTGIKSQEFFFHCMAGR 952

Query: 988  EGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFI 1047
            EGL+DTAVKTSRSGYLQRCLIK+LE L I+YD +VRD+DGS++QF YGEDG+D+  + F+
Sbjct: 953  EGLIDTAVKTSRSGYLQRCLIKHLEGLVINYDSTVRDSDGSLIQFYYGEDGLDIPGSRFL 1012

Query: 1048 SK 1049
             K
Sbjct: 1013 KK 1014



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/101 (55%), Positives = 74/101 (73%), Gaps = 2/101 (1%)

Query: 1105 ALKDNAEKFADKFLSNE--MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMT 1162
             L +  E   +++LS+   + K+    L+  K + ++  PGEPVGLLA+QS+GEPSTQMT
Sbjct: 1142 VLSERLESLLEEYLSHSPNIIKKSLRDLLSMKVMKTICPPGEPVGLLAAQSIGEPSTQMT 1201

Query: 1163 LNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            LNTFH AGRG+MNVTLGIPRL+EIL +ASK+IKTP +  P 
Sbjct: 1202 LNTFHFAGRGDMNVTLGIPRLREILMMASKNIKTPSMEIPF 1242



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 22/168 (13%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG     C GHFGHI+L +PV NPL   +L  L+K  C  C  F+           K
Sbjct: 50  CGTCGGNVHTCTGHFGHIELSMPVVNPLFHKVLCMLIKLSCLSCFTFQIPPYVKLLLSAK 109

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPED-----------------SDVSNKSSCSMVTPR 103
            +L+ +G +    +LD ++ S  +   +                  ++ N+   S   P+
Sbjct: 110 WKLLYEGQLSDIDNLDQEVTSTVAEIPNVLEAQTEYIRDFIDNYIQNIYNRDRFSCGVPQ 169

Query: 104 GNYDNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRIS 151
            N++N  N K        + +  L   + +KI    C NC    P+IS
Sbjct: 170 -NHENQMNTKNINMQWHMYVDNILKQYKAVKI----CINCHEVIPKIS 212


>gi|332239236|ref|XP_003268812.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1 [Nomascus leucogenys]
          Length = 1723

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 399/1100 (36%), Positives = 566/1100 (51%), Gaps = 171/1100 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
            L ++  G + A   L+  L     N    + ++ S+C +      Y            + 
Sbjct: 124  LRVLEVGALQAVYELERIL-----NRFLEENADPSACEIQEELEQY------------TT 166

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNG--MPHADIRANLIRGCNL 178
            +  +  L   Q   ++      C++K+  I+   F   HMN    PH          C  
Sbjct: 167  EIVQNNLLGSQGAHVKNV----CESKSKLIA--LFWKAHMNAKRCPH----------CKT 210

Query: 179  GETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLF 238
            G +    E    L                TFP      A   QK S   P G ++ +   
Sbjct: 211  GRSVVRKEHNSKLTI--------------TFPAMVHRTA--GQKDSE--PLGIEEAQTGK 252

Query: 239  SGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLP 297
             G L P+  ++ +  LW+NE F L    S M       +   S+FFL  ++VPP ++R  
Sbjct: 253  RGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDDMESRFNPSVFFLDFLVVPPSRYRPV 312

Query: 298  SKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKVIVAR 340
            S+ GD +  + QTV L  V++  + +                 A    ++  ++ + + R
Sbjct: 313  SRLGDQMFTNGQTVNLQAVMKDVVLIQKLLALMAQEQKLPEEVAAPTTDEEKDSLIAIDR 372

Query: 341  ------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKL 382
                              W+ LQ  VN++FD +      D   GI Q+LEKKEGLFR+ +
Sbjct: 373  SFLSILPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHM 432

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
            MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING  +HP
Sbjct: 433  MGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHP 492

Query: 443  GATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDG 500
            GA+  +  D   T     +   R ++ ++L T       P   +      K+V RH+++G
Sbjct: 493  GASVVINEDGSRTALSAVDMTQREAVAKQLLT-------PATGAPKPQGTKIVCRHVKNG 545

Query: 501  DVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSR 560
            D++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ E+ R
Sbjct: 546  DILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGR 605

Query: 561  AEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSS 620
            AEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y       
Sbjct: 606  AEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREQYMELVYR------ 659

Query: 621  GLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVER 680
                 T K G+  L+S          P+I KP PLWTGKQV++ +L +I           
Sbjct: 660  ---GLTDKVGRVKLLS----------PSILKPFPLWTGKQVVSTLLINI----------- 695

Query: 681  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
               +P+D                N  GK   T K         KE     PG   ++   
Sbjct: 696  ---IPEDHVPL------------NLSGKAKITGK------AWVKETPRSIPGFNPDS--- 731

Query: 741  KSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLF 798
                  + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L+RLF
Sbjct: 732  ------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLF 785

Query: 799  TVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLK 857
            T +LQ++ GFT GV+D+L+    + +R+  +  S   G R    AL L + A  D ++ K
Sbjct: 786  TAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPRAVRAALNLPEAASYDEVRGK 845

Query: 858  SEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGA 917
               + A  G         D+K   ++N H S+ +    +  GL +   +N + +M  SGA
Sbjct: 846  --WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQMMVQSGA 902

Query: 918  KGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQ 977
            KGS VN  QIS  LGQ ELEG++ P M SGK+LP F      PRAGG     FLTG++P 
Sbjct: 903  KGSTVNTMQISCLLGQIELEGRKPPLMASGKSLPCFELMSXHPRAGG-----FLTGIKPP 957

Query: 978  EYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGED 1037
            E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF YGED
Sbjct: 958  EFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGED 1017

Query: 1038 GVDVHQTSFIS--KFDALAA 1055
            G+D+ +T F+   +F  LA+
Sbjct: 1018 GLDIPKTQFLQPKQFPFLAS 1037



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 81/114 (71%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL +PGE VGLLA+QS
Sbjct: 1154 VSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 1213

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L  K
Sbjct: 1214 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTK 1267


>gi|410927310|ref|XP_003977092.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Takifugu
            rubripes]
          Length = 1749

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 399/1096 (36%), Positives = 563/1096 (51%), Gaps = 190/1096 (17%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    CPGH GH++L +PVYNPL F+ LY LL+  C  CH     R  +   + +
Sbjct: 64   CSTCYQDFNNCPGHLGHVELPLPVYNPLFFDKLYLLLRGSCLVCHSLTCPRAALHLLLNQ 123

Query: 61   LELIIKGDIIAAKSLD------LDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKP 114
            L+L+  G I     ++      L+   +++  E   +    + S++       +  + KP
Sbjct: 124  LKLLDHGAIQEVYQIEQFLNQHLEENPKATGDEIEKILKDFTASVLA--MTCKDAEDSKP 181

Query: 115  QEWTSLQFAEAKLALLQ-FLKIE--TTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRAN 171
             + T     E + +L+  F KI+  T KC +C++             H+    H      
Sbjct: 182  VKHT----VEKRSSLINDFWKIQMKTRKCPHCRSGR-----------HVVRREH------ 220

Query: 172  LIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGF 231
                  L  T  GGE    +G+  D D      F  T      + AR H          F
Sbjct: 221  ---NSKLIVTLPGGE---SVGSQMDDDMMAGKRFYMT-----ASVAREHTNKLWENEGFF 269

Query: 232  KKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPP 291
             K   LFSG          +E++   + + CS                 +FFL +++VPP
Sbjct: 270  LKC--LFSG----------VEEMPSQQGDRCS----------------DLFFLEMLVVPP 301

Query: 292  IKFRLPSKGGDSVMEHPQTVLLSKVLQ--ANIYLANAYVNQPDNA---KVIVAR------ 340
             ++R  ++ GD +  + QTV +  V++    I    A + +   A   +V+         
Sbjct: 302  CRYRPVNRLGDQMFTNGQTVNMQAVMKDCGTIRKLMALIAEEKTAVETEVMAPHQEDQTF 361

Query: 341  ----------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMG 384
                            W+ LQ  VN++FD        +   GI Q+LEKK+GLFR+ +MG
Sbjct: 362  LSSIHGLTLTDKLYNIWIRLQTHVNIVFDSDMDKMMMEKYPGIRQILEKKDGLFRKHMMG 421

Query: 385  KRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGA 444
            KRV++A RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR +++NG  +HPGA
Sbjct: 422  KRVDFAARSVICPDMYIGTNEIGIPLVFATKLTYPQPVTPWNVKELRQAVLNGPNVHPGA 481

Query: 445  THYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDV 502
            +  +  D   T+    N   R ++ ++L T      +P K        K+V RH+++GDV
Sbjct: 482  SMVIHEDGRKTILSATNTAQRTAVAKQLLT---PCPEPHK-----MPIKVVNRHIKNGDV 533

Query: 503  VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
            +L+NRQPTLH+PSI AH  R+L GEK LRMHYANC  YNADFDGDEMN HFPQ E++RAE
Sbjct: 534  LLLNRQPTLHRPSIQAHCARILPGEKVLRMHYANCKAYNADFDGDEMNAHFPQSELARAE 593

Query: 563  AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL 622
            AY +V+ ++QY+ P +G PL  LIQDH+VS   +T +  F  R ++ +L+Y         
Sbjct: 594  AYTLVSTDHQYLVPKDGKPLAGLIQDHMVSGTRMTLRGCFFTRAQYTELVYR-------- 645

Query: 623  GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI-TAVLNHITRGRPPFVVERG 681
               T K G+  L          L PAI+KP+ +WTGKQ++ T +LN I     P  +   
Sbjct: 646  -GLTDKQGRIKL----------LPPAIFKPQQMWTGKQLVSTLLLNVIPHNAIPLNLVGK 694

Query: 682  GKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNK 741
             K+P    K       +S                               PG   +     
Sbjct: 695  SKIPS---KAWIQVPPRS------------------------------APGYNPD----- 716

Query: 742  SKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFT 799
                 + + +++I + +L+ GV+DKA +    YGLVH   ELYG  T+G LLS L+RLFT
Sbjct: 717  ----NMCDSQVVICEGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGNLLSCLARLFT 772

Query: 800  VFLQM-HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE---DGAEIDPIK 855
             +LQ+  GFT GV+D+L+  +  R RK  +  S +IG +       L    D AE+    
Sbjct: 773  AYLQLFRGFTLGVEDILVKPNANRRRKKIIQQSLKIGTKALKATFNLPSCMDQAEVQGRW 832

Query: 856  LKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL----LSEGLLKPTGKNWISL 911
              + +    R          D  M     K  ++ V N++    +  GL      N + L
Sbjct: 833  QDAHLNPDQR----------DFIMVDHKFKEVANQVNNDINKVCMPVGLHTSFPDNNLQL 882

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            M  SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+D AP AGGF+  RFL
Sbjct: 883  MVQSGAKGSSVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYDPAPGAGGFVSGRFL 942

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            TG++PQE++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS++Q
Sbjct: 943  TGIKPQEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVIQ 1002

Query: 1032 FCYGEDGVDVHQTSFI 1047
            F YGEDG+DV +T F+
Sbjct: 1003 FLYGEDGLDVPKTQFL 1018



 Score =  110 bits (274), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 64/75 (85%)

Query: 1133 HKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASK 1192
            +K+  +L + GE VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS 
Sbjct: 1186 YKWQRALCEAGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASS 1245

Query: 1193 DIKTPVITCPLLVGK 1207
            +IKTP+++ P+L  K
Sbjct: 1246 NIKTPMMSVPVLNSK 1260


>gi|344297574|ref|XP_003420472.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Loxodonta africana]
          Length = 1711

 Score =  597 bits (1539), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 393/1105 (35%), Positives = 568/1105 (51%), Gaps = 176/1105 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  V   V +
Sbjct: 64   CSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVVHLLVCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L+++    + A   L+  L     E+S+P   ++  +                       
Sbjct: 124  LKVLEVXALQAVYELEHILSRFLEENSDPSAFEIQEE----------------------- 160

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
              L+   AK+     L  +     N C++++  ++   F   HM+    PH         
Sbjct: 161  --LEQYTAKIVQNNLLGPQGAHVKNVCESRSKLVAH--FWKTHMSAKRCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDA-PETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKK 233
             C  G +    E    L  +    A  +++  +   PG +D    +              
Sbjct: 208  -CKTGRSVVRKEHNSKLTITYPAIAHKKSNQKDAETPGIEDAQLGKR------------- 253

Query: 234  QKDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPI 292
                  G L P+  ++ +  LWENE F L      ++  G   +   S+FFL  ++VPP 
Sbjct: 254  ------GYLTPTSAREHLITLWENEGFFLNYLFLGLEDVGMESRFNPSMFFLDFLVVPPS 307

Query: 293  KFRLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAK 335
            ++R  S+ GD +  + QTV L  V++  + +                 A    ++  ++ 
Sbjct: 308  RYRPVSRLGDQMFTNGQTVNLQAVMKDIVLIRKLLALMAQEQKLPYEVAAPATDEEKDSS 367

Query: 336  VIVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGL 377
            +++ R                  W+ LQ  VN++FD +      +   GI Q+LEKK+GL
Sbjct: 368  IVMDRSFLSILPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQILEKKDGL 427

Query: 378  FRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIING 437
            FR+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING
Sbjct: 428  FRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVING 487

Query: 438  AEIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYR 495
              +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V R
Sbjct: 488  PNVHPGASMVINEDGSRTALSASDLTQREAVAKQLLT-------PATGAPKPQGTKIVCR 540

Query: 496  HLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQ 555
            H+++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ
Sbjct: 541  HVKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQ 600

Query: 556  DEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSS 615
             E+ RAEA  +   + QY+ P +G PL  LIQDH+VS   +T +  F  R+E+ +L+Y  
Sbjct: 601  SELGRAEACILACTDQQYLVPKDGQPLAGLIQDHMVSGTSMTIRGCFFTREEYMELVY-- 658

Query: 616  GVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPP 675
                 GL    G+            ++ P  PAI KP  LWTGKQV++ +L +I      
Sbjct: 659  ----RGLTDKVGR-----------VKIFP--PAILKPFCLWTGKQVVSTLLINI------ 695

Query: 676  FVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEK 735
                    +P+D                     L+ T K         KE     PG   
Sbjct: 696  --------IPKDHI------------------PLNLTGKAKIGGKAWVKEPPRPVPGFNP 729

Query: 736  EAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSA 793
            ++         + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ 
Sbjct: 730  DS---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTC 780

Query: 794  LSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID 852
            L+RLFT +LQ++ GFT  V+D+L+    + +R   +  S   G R    AL L + A  D
Sbjct: 781  LARLFTAYLQLYRGFTLDVEDILVKPKADVKRHRIIEESTHCGARAVRAALNLPEAASCD 840

Query: 853  PIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLM 912
             I+ K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M
Sbjct: 841  EIRGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENNLQMM 897

Query: 913  TTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLT 972
              SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLT
Sbjct: 898  VQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVSGRFLT 957

Query: 973  GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQF 1032
            G+RP E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF
Sbjct: 958  GIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQF 1017

Query: 1033 CYGEDGVDVHQTSFIS--KFDALAA 1055
             YGEDG+D+ +T F+   +F  LA+
Sbjct: 1018 LYGEDGLDIPKTQFLQPRQFPFLAS 1042



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/95 (60%), Positives = 73/95 (76%), Gaps = 3/95 (3%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            AEK  +K   +E + +    L++ K+  SL  PGE VGLLA+QS+GEPSTQMTLNTFH A
Sbjct: 1178 AEKSYEK---SEPSLERLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFA 1234

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            GRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+ 
Sbjct: 1235 GRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF 1269


>gi|330927073|ref|XP_003301728.1| hypothetical protein PTT_13304 [Pyrenophora teres f. teres 0-1]
 gi|311323320|gb|EFQ90175.1| hypothetical protein PTT_13304 [Pyrenophora teres f. teres 0-1]
          Length = 1797

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 439/1294 (33%), Positives = 644/1294 (49%), Gaps = 203/1294 (15%)

Query: 1    CKTCGQRQFL-CPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVR 59
            C TCG   FL CPGH GHI+L VPVY+    + L  LL+  C +CHH K +R  + + V 
Sbjct: 62   CATCGLTTFLGCPGHCGHIELPVPVYHLTFMDQLLRLLRGTCAYCHHTKLARTTINEFVS 121

Query: 60   KLELIIKGDIIAAKSLDLDLP------SESSNPEDSDVSNKSSCSMVTPRGNY-----DN 108
            KL LI  G +  A  + L +       +E   PE SD  +     ++T R NY      N
Sbjct: 122  KLRLIRCGLVQEANDMHLHITHGKGKTTELDAPE-SDDDDNDDDGIITQRNNYVKRCMKN 180

Query: 109  VRNLKPQEWTSLQ----FAEAKLALLQFLKIETTK---CGNCKAKNPRISKPTFGWIHMN 161
                K +  T+ +     ++A+  +++    E  K   C NC+  +P   K     I   
Sbjct: 181  AGISKHEARTAREKNETISDARRQVVKDFYAELVKHKSCRNCQGISPSYRKDRGIKIFRK 240

Query: 162  GMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETH------------------ 203
             +   D          + +     +   D+ A  D  A + H                  
Sbjct: 241  ALSQKD-------KAKMAQAEKRIQNPLDILARRDAKAKKQHVHADEGVADLDPVSEDED 293

Query: 204  ------SFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWEN 257
                    +G+   T+   ARR +  +        ++ +     +  ++VK I+  L+EN
Sbjct: 294  MDIDMQQADGSLVATESRMARRTKPAT--------EESENAQEYVSAAEVKAIMTLLFEN 345

Query: 258  EFELCSFISDMQQQGFGKKA----GHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLL 313
            E E+      M    +G K+       +FF   ++VPP K+R     G+++ E P+    
Sbjct: 346  ESEMMR----MLYSPYGSKSLVDVSPDMFFTQAIIVPPNKYRPEDGTGETITESPKNKPY 401

Query: 314  SKVLQAN---IYLANAYVNQPDNAKV-------IVARWMNLQQSVNVLFD-------GKN 356
              +++A      +++    +P+ A         +  +++NLQ  VN L D       G+ 
Sbjct: 402  KSIIEACETIDQISHEMRGRPNEAGYRQRNFDDMQTQFVNLQGVVNALIDCDANPVQGRA 461

Query: 357  AAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRL 416
             A   D   GI Q LEKKEGLFR+ +MGKRVN+A RSVISPDP +  NEIG+PP FA +L
Sbjct: 462  GALNTD---GIKQALEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFAKKL 518

Query: 417  TYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM---RISIGRKLDTS 473
            TYPE VT  N   L+++++NG +  PGA H ++      +   KK    R+++  +L   
Sbjct: 519  TYPEPVTNHNFYDLKEAVLNGPDKWPGA-HAIENEFGQIIALRKKTYDERLALANQL--- 574

Query: 474  RGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH 533
                + P     N    K V+RHL +GDVV++NRQPTLHKPS+MAH  RVL GEKT+RMH
Sbjct: 575  ----LAPTNSYSNGARNKKVHRHLNNGDVVIMNRQPTLHKPSMMAHRARVLPGEKTIRMH 630

Query: 534  YANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSA 593
            YANC+TY         N  F  DE+      N+    N+  R    + +     DH   +
Sbjct: 631  YANCNTY---------NADFDGDEM------NMHFPQNELAR---AEAMTIADTDHQYLS 672

Query: 594  ALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPE 653
            A   K    L +D       S GVS S   +F            + +E   LL +  +PE
Sbjct: 673  ATAGKPLRGLIQDHI-----SMGVSISNKDTFF-----------TREEYHQLLYSSLRPE 716

Query: 654  PLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQS---DRKKNDKGKLS 710
               T    +  V   + + RP +    G ++     K    A+ Q      K +  GKL 
Sbjct: 717  EGHTTSGRLETVSPAVLKPRPMWT---GKQIITTILKNIKPAEYQGLTLTSKSSTNGKLW 773

Query: 711  KTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQF 769
              +                                  SEE+++I K+  L+ G++DK Q 
Sbjct: 774  GVH----------------------------------SEEQIVIVKDGHLLSGIMDKGQI 799

Query: 770  ADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNH 827
                 GL++ + E YG   AG  LS + RL T  L M  F+CGV+DL++ ++ +R R   
Sbjct: 800  GPTAGGLINGIYEAYGETIAGRALSIIGRLLTKMLHMRAFSCGVEDLILTEEGDRARLEE 859

Query: 828  LHGSEEIGKRVHLEALELEDGAEIDPI--KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNK 885
            L  +E++G  V  + + L D  +IDP   +L+  +E  +R   D      D+ +T+  N 
Sbjct: 860  LRKAEKLGFEVASKYVTL-DAEKIDPTNPELRRRLEAVLRD--DTKQHGLDL-LTNTANS 915

Query: 886  HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMV 945
              SS+V   +L + L+K   KN +  MT SGAKGS VN  QIS +LGQQ LEG+RVP M+
Sbjct: 916  KISSAVTAAVLPDKLIKAFPKNQMQAMTGSGAKGSMVNANQISCNLGQQVLEGRRVPVMI 975

Query: 946  SGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQR 1005
            SGKTLP F P++ + RAGG+I++RFLTG+RPQEYYFH MAGREGL+DTAVKTSRSGYLQR
Sbjct: 976  SGKTLPCFKPFETSVRAGGYIVNRFLTGIRPQEYYFHMMAGREGLIDTAVKTSRSGYLQR 1035

Query: 1006 CLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS--KFDALAARERGRGRG 1063
            C+IK +E L++ YD SVRD+DG++VQF YGEDG+D  +  +++  KF A       +   
Sbjct: 1036 CIIKGMEGLRVEYDTSVRDSDGTMVQFLYGEDGLDTTKQKYLNDFKFQAQNFYSLAQTLH 1095

Query: 1064 RNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASN-AYIMELPD------------ALKDNA 1110
              +   + +    +  N++   K   G + + + A  +  P             A ++  
Sbjct: 1096 TAEAYPRVASAEAVEHNKKAAKKAKKGDVTSMDPATAVYTPSRHSGSTSELFLQAKREYC 1155

Query: 1111 EKFADKFLSN-------EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTL 1163
            +K  DK L +       E+ K+ F +++  K++ SL +PGE VG++A QS+GEPSTQMTL
Sbjct: 1156 DKNPDKLLKHKKQDQEGEILKRTFEQMLDLKYLRSLVEPGEAVGVVAGQSIGEPSTQMTL 1215

Query: 1164 NTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTP 1197
            NTFHLAG    NVTLGIPRL+EI+  AS +I TP
Sbjct: 1216 NTFHLAGHSAKNVTLGIPRLREIVMTASANISTP 1249


>gi|291386403|ref|XP_002709704.1| PREDICTED: DNA-directed RNA polymerase I A isoform 2 [Oryctolagus
            cuniculus]
          Length = 1720

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 393/1107 (35%), Positives = 569/1107 (51%), Gaps = 173/1107 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +     +
Sbjct: 64   CATCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLFCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P   ++  +                       
Sbjct: 124  LRVLEVGALQAVFELERILNRFLEENADPSAFEIQEE----------------------- 160

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
              L+   A++     L  +     N C++++  I+   F   HM     PH         
Sbjct: 161  --LEKYTAEIVQNNLLGSQGAHVKNVCESRSKLIA--YFWKTHMTAKRCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPG-TQDTAARRHQKGSGAVPS--GF 231
             C  G +    E    L                T+P      A ++  +    +P   G 
Sbjct: 208  -CKTGRSVVRKEHNSKLTI--------------TYPAIVHKKAGQQDSEKPTRIPQTPGI 252

Query: 232  KKQKDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVP 290
            ++ +    G L P+  ++ +  +W+NE F L    S +   G       ++FFL  ++VP
Sbjct: 253  EESQMGKRGYLTPNSAREHLFAIWKNEGFFLNYLFSGLDDVGTESGFNPAVFFLDFMVVP 312

Query: 291  PIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDN 333
            P ++R  ++ GD +  + QTV L  V++  + +                 A     +  +
Sbjct: 313  PSRYRPVNRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPCEVALPVTEEDKD 372

Query: 334  AKVIVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKE 375
              V V R                  W+ LQ  VN++FD +      +   GI Q+LEKKE
Sbjct: 373  TSVAVDRSFLSALPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQILEKKE 432

Query: 376  GLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSII 435
            GLFR+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++I
Sbjct: 433  GLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVI 492

Query: 436  NGAEIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMV 493
            NG  +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V
Sbjct: 493  NGPNVHPGASMVINEDGSRTALSATDVTQREAVAKQLLT-------PATGAPKPQGTKIV 545

Query: 494  YRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHF 553
             RH+++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HF
Sbjct: 546  CRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHF 605

Query: 554  PQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLY 613
            PQ E+ RAEA  +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y
Sbjct: 606  PQSELGRAEACVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVY 665

Query: 614  SSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGR 673
                   GL    G+            ++LP  PAI KP PLWTGKQV++ +L +I    
Sbjct: 666  ------RGLTDKVGR-----------VKLLP--PAILKPFPLWTGKQVVSTLLINI---- 702

Query: 674  PPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGE 733
                      +P+D      +           K K+S             K  V+  P  
Sbjct: 703  ----------IPEDHIPLNLSG----------KAKIS------------GKAWVKETPRP 730

Query: 734  EKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLL 791
                + N      + E +++I + +L+ GV+DKA +    +GLVH   E+YG  T+G +L
Sbjct: 731  VPNFDPNS-----MCESQVIIKEGELLCGVLDKAHYGSSAFGLVHCCYEIYGGETSGKVL 785

Query: 792  SALSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAE 850
            + L+RLFT +LQ++ GFT GV+D+L+    +  R   +  S + G R    AL L + A 
Sbjct: 786  TCLARLFTAYLQLYRGFTLGVEDILVKPKADVRRHRIIEESTQCGSRAVRAALNLPEAAS 845

Query: 851  IDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS 910
             D I+ K   + A  G         D+K   ++N H S+ +    +  GL +   +N + 
Sbjct: 846  CDEIREK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENNLQ 902

Query: 911  LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRF 970
            +M  SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RF
Sbjct: 903  MMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRF 962

Query: 971  LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIV 1030
            LTG++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+V
Sbjct: 963  LTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVV 1022

Query: 1031 QFCYGEDGVDVHQTSFIS--KFDALAA 1055
            QF YGEDG+D+ +T F+   +F  LA+
Sbjct: 1023 QFLYGEDGLDIPKTQFLQPKQFPFLAS 1049



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 80/114 (70%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL  PGE VGLLA+QS
Sbjct: 1166 VSETFEKKVDDYSQEWAAQAETSYEKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQS 1225

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L  K
Sbjct: 1226 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTK 1279


>gi|291386401|ref|XP_002709703.1| PREDICTED: DNA-directed RNA polymerase I A isoform 1 [Oryctolagus
            cuniculus]
          Length = 1713

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 394/1105 (35%), Positives = 567/1105 (51%), Gaps = 176/1105 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +     +
Sbjct: 64   CATCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLFCQ 123

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P   ++  +                       
Sbjct: 124  LRVLEVGALQAVFELERILNRFLEENADPSAFEIQEE----------------------- 160

Query: 118  TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
              L+   A++     L  +     N C++++  I+   F   HM     PH         
Sbjct: 161  --LEKYTAEIVQNNLLGSQGAHVKNVCESRSKLIA--YFWKTHMTAKRCPH--------- 207

Query: 175  GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPG-TQDTAARRHQKGSGAVPSGFKK 233
             C  G +    E    L                T+P      A ++  +  G   S   K
Sbjct: 208  -CKTGRSVVRKEHNSKLTI--------------TYPAIVHKKAGQQDSESLGIEESQMGK 252

Query: 234  QKDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPI 292
            +     G L P+  ++ +  +W+NE F L    S +   G       ++FFL  ++VPP 
Sbjct: 253  R-----GYLTPNSAREHLFAIWKNEGFFLNYLFSGLDDVGTESGFNPAVFFLDFMVVPPS 307

Query: 293  KFRLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAK 335
            ++R  ++ GD +  + QTV L  V++  + +                 A     +  +  
Sbjct: 308  RYRPVNRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPCEVALPVTEEDKDTS 367

Query: 336  VIVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGL 377
            V V R                  W+ LQ  VN++FD +      +   GI Q+LEKKEGL
Sbjct: 368  VAVDRSFLSALPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQILEKKEGL 427

Query: 378  FRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIING 437
            FR+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING
Sbjct: 428  FRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVING 487

Query: 438  AEIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYR 495
              +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V R
Sbjct: 488  PNVHPGASMVINEDGSRTALSATDVTQREAVAKQLLT-------PATGAPKPQGTKIVCR 540

Query: 496  HLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQ 555
            H+++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ
Sbjct: 541  HVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQ 600

Query: 556  DEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSS 615
             E+ RAEA  +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y  
Sbjct: 601  SELGRAEACVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVY-- 658

Query: 616  GVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPP 675
                 GL    G+            ++LP  PAI KP PLWTGKQV++ +L +I      
Sbjct: 659  ----RGLTDKVGR-----------VKLLP--PAILKPFPLWTGKQVVSTLLINI------ 695

Query: 676  FVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEK 735
                    +P+D      +           K K+S             K  V+  P    
Sbjct: 696  --------IPEDHIPLNLSG----------KAKIS------------GKAWVKETPRPVP 725

Query: 736  EAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSA 793
              + N      + E +++I + +L+ GV+DKA +    +GLVH   E+YG  T+G +L+ 
Sbjct: 726  NFDPNS-----MCESQVIIKEGELLCGVLDKAHYGSSAFGLVHCCYEIYGGETSGKVLTC 780

Query: 794  LSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID 852
            L+RLFT +LQ++ GFT GV+D+L+    +  R   +  S + G R    AL L + A  D
Sbjct: 781  LARLFTAYLQLYRGFTLGVEDILVKPKADVRRHRIIEESTQCGSRAVRAALNLPEAASCD 840

Query: 853  PIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLM 912
             I+ K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M
Sbjct: 841  EIREK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENNLQMM 897

Query: 913  TTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLT 972
              SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLT
Sbjct: 898  VQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLT 957

Query: 973  GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQF 1032
            G++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF
Sbjct: 958  GIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQF 1017

Query: 1033 CYGEDGVDVHQTSFIS--KFDALAA 1055
             YGEDG+D+ +T F+   +F  LA+
Sbjct: 1018 LYGEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 80/114 (70%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL  PGE VGLLA+QS
Sbjct: 1159 VSETFEKKVDDYSQEWAAQAETSYEKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQS 1218

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L  K
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTK 1272


>gi|432102463|gb|ELK30040.1| DNA-directed RNA polymerase I subunit RPA1 [Myotis davidii]
          Length = 1657

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 393/1110 (35%), Positives = 566/1110 (50%), Gaps = 186/1110 (16%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 58   CSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLICQ 117

Query: 61   LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
            L ++  G + A   L+  L     E+++P   ++  +                     E 
Sbjct: 118  LRVLEVGALQAVYELERILNRFLEENADPTAFEIQEE--------------------LEQ 157

Query: 118  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNG--MPHADIRANLIRG 175
             + +  +  L   Q   ++      C++K+  I+   F   HM     PH          
Sbjct: 158  YTREIVQNNLLGSQGSHVKNV----CESKSKLIT--CFWRTHMTAKRCPH---------- 201

Query: 176  CNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQK 235
            C  G      E    L                T+P        R    +   P G  + +
Sbjct: 202  CKTGRAVVRKEHNSKLTV--------------TYPAV----VHRKAGQTDTEPPGIDEAQ 243

Query: 236  DLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKF 294
                G L P+  ++ +  LW+NE F L    S ++      +   ++FFL  ++VPP ++
Sbjct: 244  MGKRGYLTPTGAREHLTALWKNEGFFLNFLFSGLEDVDMESRFNPTMFFLDFLVVPPSRY 303

Query: 295  RLPSKGGDSVMEHPQTVLLSKVLQANIYLAN--AYVNQPDNAKVIVAR------------ 340
            R  ++ GD +  + QTV L  V++  + +    A + Q       VA             
Sbjct: 304  RPVNRLGDQMYTNGQTVNLQAVMKDVVLIRKLLALMAQEQELPWEVAAPATDEEKDSSNG 363

Query: 341  ---------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFR 379
                                 W+ LQ  VN++FD +      +   GI Q+LEKKEGLFR
Sbjct: 364  MDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMTEKYPGIRQILEKKEGLFR 423

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
            + +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING  
Sbjct: 424  KHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPN 483

Query: 440  IHPGATHYLDK------LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMV 493
            +HPGA+  +++      LS + L      R ++ ++L T       P   +      K+V
Sbjct: 484  VHPGASMVINEDGSRTALSAVDL----TQREAVAKQLLT-------PATGAPKPQGTKIV 532

Query: 494  YRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHF 553
             RH+++GDV+L++RQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HF
Sbjct: 533  CRHVKNGDVLLLSRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHF 592

Query: 554  PQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLY 613
            PQ E+ RAEAY +   + QY+ P +G PL  LIQDH+++ A +T +  F  R+++ +L+Y
Sbjct: 593  PQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMIAGANMTIRGCFFTREQYMELIY 652

Query: 614  SSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGR 673
                        T K G   L +          PAI KP PLWTGKQV++ +L +I    
Sbjct: 653  R---------GLTDKVGHVKLFA----------PAILKPFPLWTGKQVVSTLLINI---- 689

Query: 674  PPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK--- 730
                      +P++                      S  N   K K G K  V E     
Sbjct: 690  ----------IPEEH---------------------SPLNLSGKAKIGGKAWVKESPRPV 718

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAG 788
            PG   ++         + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G
Sbjct: 719  PGFNPDS---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSG 769

Query: 789  TLLSALSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED 847
             +L+ L+RLFT +LQ++ GFT GV+D+L+    +  R   +  S   G R    AL L +
Sbjct: 770  KVLTCLARLFTAYLQLYRGFTLGVEDILVKPQADVRRHRIIDESTHCGPRAVRSALNLPE 829

Query: 848  GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKN 907
             A  D  +++   + A  G         D+K   ++N H S+ +    +  GL +   +N
Sbjct: 830  TAPCD--EVRGRWQDAHLGQDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPEN 886

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
             + +M  SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+ 
Sbjct: 887  NLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVT 946

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
             RFLTG++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DG
Sbjct: 947  GRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDG 1006

Query: 1028 SIVQFCYGEDGVDVHQTSFIS--KFDALAA 1055
            S+VQF YGEDG+D+ +T F+   +F  LA+
Sbjct: 1007 SVVQFLYGEDGLDIPKTQFLQPKQFPFLAS 1036



 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 80/114 (70%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    F  +E++      L++ K+  SL  PGE VGLLA+QS
Sbjct: 1153 VSETFEKKMDDYSREWASQAEKSFEKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQS 1212

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L  K
Sbjct: 1213 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTK 1266


>gi|401826144|ref|XP_003887166.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon hellem ATCC
            50504]
 gi|337263120|gb|AEI69271.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon hellem]
 gi|392998324|gb|AFM98185.1| DNA-directed RNA polymerase subunit beta' [Encephalitozoon hellem
            ATCC 50504]
          Length = 1396

 Score =  593 bits (1530), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 373/969 (38%), Positives = 531/969 (54%), Gaps = 174/969 (17%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            L P  VK++IE L+ NE +L   I   ++ G        IFF+  V V P +FR  S   
Sbjct: 221  LSPDVVKELIENLFLNEGDLVESIFSTREPG--------IFFISNVPVVPNRFRPISIVN 272

Query: 302  DSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQR 361
               +E+PQ + L  ++  +I +              ++ W  LQ +V   FD  N   + 
Sbjct: 273  GKKIENPQIIYLRDIISISISMTKD-----------LSYWPELQSAVLSSFDNANIK-KW 320

Query: 362  DMASGIC----QLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLT 417
            + AS I     Q+LE+KEGLFR+ +MGKRVN+A R+VISPDP +   EIGIP  FA  LT
Sbjct: 321  NYASTIPPGHKQILERKEGLFRRNIMGKRVNFAGRTVISPDPNIETREIGIPSVFAEALT 380

Query: 418  YPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAI 477
            +PERVT +NV +L+ +++NG   +PG+ +  D            + +S+    D  R A+
Sbjct: 381  FPERVTSFNVSRLKKAVVNGP-TYPGSLYLQDG----------DVMLSLEHMADEKRYAL 429

Query: 478  VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 537
                 D       K V+RHL DGDVVLVNRQPTLH+PSIMAH  RVLKGE+T+RMHYANC
Sbjct: 430  ANQLLDGK-----KTVWRHLVDGDVVLVNRQPTLHRPSIMAHKCRVLKGERTIRMHYANC 484

Query: 538  STYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
             +YNADFDGDEMN+HFPQ  VS AEA +IV  +  Y+ P++G+P+R L QDHIV A +LT
Sbjct: 485  KSYNADFDGDEMNIHFPQTYVSEAEARHIVMNDFNYLAPTDGNPIRGLTQDHIVVATILT 544

Query: 598  KKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWT 657
             K++F + +++  L+ S            G  G+RV++ +         P I KP  L++
Sbjct: 545  MKNSFFSEEDYFTLVNS------------GINGRRVVLDK---------PCILKPVRLYS 583

Query: 658  GKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHK 717
            GKQVI+ ++ ++            G L     +T+  A+                     
Sbjct: 584  GKQVISTIIKNL------------GLLVDVEIQTKIPAN--------------------- 610

Query: 718  DKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLV 775
                               A K  S+E +L      I + ++V G++DK         L 
Sbjct: 611  -------------------AWKEHSEESKLR-----IKQGNIVTGILDKNSLGPTFKSLA 646

Query: 776  HTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIG 835
            HT  E+ G   +  LL+ + R+   +LQM+GFT G+DDL++ K+ +  RK  +   ++  
Sbjct: 647  HTCGEVKGFAASNDLLTYVGRVANRYLQMYGFTIGIDDLILDKEADTRRKMVIEAKDKEA 706

Query: 836  KRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL 895
            +R+  + +      E +P     E +K           Y D  M +++NK T +S+++  
Sbjct: 707  QRLQRKYM------EANPDFYLYEDKK----------VYLDSIMRAEMNKVT-TSIVDAS 749

Query: 896  LSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHP 955
            +  GL K    N + L+ T GAKGS VN  QIS  LGQQELEG+RVP MVSGKTLP F  
Sbjct: 750  VPSGLKKSFPNNGMELIITVGAKGSIVNLSQISGALGQQELEGRRVPIMVSGKTLPCFRE 809

Query: 956  WDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK 1015
             D +P +GG+I   FL G+   +Y+FHCMAGREGL+DTA+KT+ SGYLQRCL+K++E LK
Sbjct: 810  LDPSPSSGGYIYQGFLNGIDLPQYFFHCMAGREGLIDTAIKTANSGYLQRCLVKHMEELK 869

Query: 1016 ISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTF 1075
            ++YD S R     I+QF YGEDG+D  ++S++S  +          +  + F ++ S  F
Sbjct: 870  VAYDMSAR-IGSKIIQFVYGEDGLDCTRSSYLSDTEFFR-------KNASLFKERESTVF 921

Query: 1076 VMGRN-QEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHK 1134
             +G N ++++ KK   Q++        L D LK                       +  +
Sbjct: 922  KLGANCKDLLSKKFKEQIEG-------LDDELKG---------------------FLMSR 953

Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
            +  SLA PGE VG++A+QSVGEPSTQMTLNTFHLAG G  NVTLG+PRL+EIL  AS+ I
Sbjct: 954  YACSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGVGAKNVTLGVPRLREILLAASRSI 1013

Query: 1195 KTPVITCPL 1203
            KTP+I  P+
Sbjct: 1014 KTPLIMIPI 1022



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 40/67 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           CKTC      CPGHFGHI L  PV+NP+LF+ L +++K  CF C HF+ +  +      K
Sbjct: 59  CKTCNLSLLNCPGHFGHIKLPRPVFNPILFDSLLSIVKCCCFQCKHFRITNYDRLILFCK 118

Query: 61  LELIIKG 67
           L L+  G
Sbjct: 119 LSLLRNG 125


>gi|303389110|ref|XP_003072788.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon
            intestinalis ATCC 50506]
 gi|303301930|gb|ADM11428.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon
            intestinalis ATCC 50506]
          Length = 1393

 Score =  593 bits (1530), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 372/972 (38%), Positives = 526/972 (54%), Gaps = 180/972 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            L P  +++++E L+ NE +L   I   +          ++FFL  + V P +FR  S   
Sbjct: 221  LFPDFIRELVEDLFSNEADLIGSIFSTKDP--------NMFFLTSIPVTPNRFRPVSFLN 272

Query: 302  DSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQR 361
            +    +PQT   + +L  N           +  K  ++ W  LQ +V   FD  N   +R
Sbjct: 273  EKKAPNPQTFSFNDILTIN-----------ELVKKDLSYWPELQGAVLSSFDNSNLR-KR 320

Query: 362  DMA----SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLT 417
            ++      G  Q+LEKKEGLFR+ +MGKRVN+A R+VISPDP L   EIG+P  FA  LT
Sbjct: 321  NIGLITPPGHKQILEKKEGLFRKNIMGKRVNFAARTVISPDPNLETREIGVPFVFAEVLT 380

Query: 418  YPERVTPWNVVKLRDSIINGAEIHPGATHYLD---KLSTMRLPPNKKMRISIGRKLDTSR 474
            +PERVT +NV KL+ +I+NG+  +PG+ +  D    LS   +P  K+  ++  + LD   
Sbjct: 381  FPERVTSFNVSKLKKAIVNGS-TYPGSLYLQDGDVMLSLSHMPDEKRFALA-NQLLD--- 435

Query: 475  GAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY 534
                  GK        K+V+RHL DGDVVLVNRQPTLH+PSIMAH  +VLKGE+TLRMHY
Sbjct: 436  ------GK--------KVVWRHLVDGDVVLVNRQPTLHRPSIMAHKCKVLKGERTLRMHY 481

Query: 535  ANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAA 594
            ANC +YNADFDGDEMN+HFPQ  V+ AEA +IV  +  Y+ P++G P+R L QDHIV+AA
Sbjct: 482  ANCKSYNADFDGDEMNIHFPQSYVAEAEARHIVMNDFNYLVPTDGKPIRGLTQDHIVAAA 541

Query: 595  LLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEP 654
            +LT K++F + +++  L+ S            G  G+R+ I +         P I KP  
Sbjct: 542  ILTMKNSFFSEEDYFTLVNS------------GLDGRRITIDK---------PCILKPVR 580

Query: 655  LWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNK 714
            L++GKQV++A++ ++  G     +E   K+P+D                           
Sbjct: 581  LYSGKQVLSAIIKNLGLG---LNIEIETKVPKD--------------------------- 610

Query: 715  MHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY-- 772
                                  A +  S+E  L      I + +++ G++DK        
Sbjct: 611  ----------------------AWREHSEESVLR-----ISEGNIITGILDKNSIGPTFK 643

Query: 773  GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSE 832
             L H   E+ G   +  LL+ + R+   +LQM+GFT G DDL++  D   +RK  +   +
Sbjct: 644  SLAHACGEIRGFAASNDLLTYIGRVCNKYLQMYGFTIGADDLILSNDANAKRKKVMETKD 703

Query: 833  EIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVI 892
            +  + +  E +E      +                 D   AY D  M  ++NK T S ++
Sbjct: 704  KKVRELQKEYMEANPDFYL----------------CDDKKAYLDSIMRREMNKIT-SEIV 746

Query: 893  NELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPS 952
            N  +  GL K    N + L+ + G+KGS VN  QIS  LGQQELEG+RVP M SGKTLP 
Sbjct: 747  NASVPSGLKKGFPDNGMELIVSIGSKGSIVNLSQISGALGQQELEGRRVPVMASGKTLPC 806

Query: 953  FHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 1012
            F P D  P +GG+I   FL G+ P +Y+FHCMAGREGL+DTA+KT+ SGYLQRCL+K++E
Sbjct: 807  FKPLDPDPSSGGYIYQGFLDGINPSQYFFHCMAGREGLIDTAIKTANSGYLQRCLVKHME 866

Query: 1013 CLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGS 1072
             +K+ YD S R     IVQF YGEDG+D  ++S++   +            RN F     
Sbjct: 867  GIKVEYDRSAR-IGKKIVQFVYGEDGLDCTKSSYLDDPEFFR---------RNAF----- 911

Query: 1073 HTFVMGRNQEMIYKKCS-GQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLV 1131
                       ++K+ S      SN Y   L    K   E F           ++  + +
Sbjct: 912  -----------LFKELSLSSFKLSNRYEDFLSPRFKKEIEFF----------DEELKRFL 950

Query: 1132 KHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIAS 1191
            + ++V SLA PGE VG++A+QS+GEPSTQMTLNTFHLAG GE NVTLG+PRL+EIL +AS
Sbjct: 951  ESRYVCSLADPGESVGIIAAQSIGEPSTQMTLNTFHLAGVGEKNVTLGVPRLREILLVAS 1010

Query: 1192 KDIKTPVITCPL 1203
            K IKTP++T P+
Sbjct: 1011 KSIKTPLVTIPI 1022



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 65/154 (42%), Gaps = 15/154 (9%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           CKTC      CPGHFG I L  PV+NP+ F+ L +L++  CF C HF+ +  +      K
Sbjct: 59  CKTCNLSLLNCPGHFGRIKLFKPVFNPIFFDSLLSLVRCCCFQCRHFRITNYDRLIMFCK 118

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
             L+  G+ I        L    +  E+ ++ +  S  + + R N       K QE    
Sbjct: 119 FSLLRNGEEIDG------LDELYATSEEEELYSVVSKRVESSRKNRPGPPTDKYQEMVRH 172

Query: 121 QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPT 154
            F+               KC  C   NP+I K T
Sbjct: 173 FFSSIN---------SKKKCVRCGHANPKIYKGT 197


>gi|189191780|ref|XP_001932229.1| DNA-directed RNA polymerase I subunit RPA1 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
 gi|187973835|gb|EDU41334.1| DNA-directed RNA polymerase I subunit RPA1 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
          Length = 1790

 Score =  593 bits (1528), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 436/1292 (33%), Positives = 634/1292 (49%), Gaps = 197/1292 (15%)

Query: 1    CKTCGQRQFL-CPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVR 59
            C TCG   FL CPGH GHI+L VPVY+    + L  LL+  C +CHH K +R  + + V 
Sbjct: 62   CATCGLTTFLGCPGHCGHIELPVPVYHLTFMDQLLRLLRGTCAYCHHTKLARTTINEFVS 121

Query: 60   KLELIIKGDIIAAKSLDLDLP------SESSNPEDSDVSNKSSCSMVTPRGNY------- 106
            KL LI  G +  A  + L +       ++   PE  D  +  +  ++T R NY       
Sbjct: 122  KLRLIRCGLVQEANDMHLHITHGKGKTNDLDAPESDDEDDDDNDDIITQRNNYVKRCMKY 181

Query: 107  -----DNVRNLKPQEWTSLQFAEAKLALLQFLKIETTK---CGNCKAKNPRISKPTFGWI 158
                    R  + +  T    ++A+  +++    E  K   C NC+  +P   K     I
Sbjct: 182  AGISKHEARTAREKNET---ISDARRQVVKDFYAELVKHKSCRNCQGISPSYRKDRGIKI 238

Query: 159  HMNGMPHADIRANLIRGCNLGET----------------FSGGEEEKDLGASSDVDAP-- 200
                +   D +A + +     ++                    E   DL   S+ D    
Sbjct: 239  FRKALSQKD-KAKMAQAEKRIQSPLDILARREAKAKKQHVHADEGVADLDPVSEEDEDMD 297

Query: 201  -ETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEF 259
             +    +G+   T+   ARR +  +        ++ +     +  ++VK  +  L+ENE 
Sbjct: 298  IDMQQADGSLVATESRMARRTKPAT--------EESENAQEYVSAAEVKATMTLLFENES 349

Query: 260  ELCSFISDMQQQGFGKKA----GHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSK 315
            E+      M    +G K+       +FF   ++VPP K+R     G+++ E P+      
Sbjct: 350  EMMR----MLYSPYGSKSLVDVSPDMFFTQAIIVPPNKYRPEDGTGETITESPKNKPYKS 405

Query: 316  VLQANIYL---ANAYVNQPD-------NAKVIVARWMNLQQSVNVLFD-------GKNAA 358
            +++A   +   ++    +P+       N   +  +++NLQ  VN L D       G+  A
Sbjct: 406  IIEACETINQISHEMRGRPNETGYRQRNFDDMQTQFVNLQGVVNALIDCDANPVQGRAGA 465

Query: 359  GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTY 418
               D   GI Q LEKKEGLFR+ +MGKRVN+A RSVISPDP +  NEIG+PP FA +LTY
Sbjct: 466  VNTD---GIKQALEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFAKKLTY 522

Query: 419  PERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM---RISIGRKLDTSRG 475
            PE VT  N   L+++++NG +  PGA H ++      +   KK    R+++  +L     
Sbjct: 523  PEPVTNHNFYDLKEAVLNGPDKWPGA-HAIENEFGQIIALRKKTYDERLALANQL----- 576

Query: 476  AIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYA 535
              + P     N    K V+RHL +GDVV++NRQPTLHKPS+MAH  RVL GEKT+RMHYA
Sbjct: 577  --LAPTNSYSNGARNKKVHRHLNNGDVVIMNRQPTLHKPSMMAHRARVLPGEKTIRMHYA 634

Query: 536  NCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAAL 595
            NC+TY         N  F  DE+      N+    N+  R    + +     DH   +A 
Sbjct: 635  NCNTY---------NADFDGDEM------NMHFPQNELAR---AEAMTIADTDHQYLSAT 676

Query: 596  LTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPL 655
              K    L +D       S GVS S   +F            + +E   LL +  +PE  
Sbjct: 677  AGKPLRGLIQDHI-----SMGVSISNKDTFF-----------TREEYHQLLYSSLRPEEG 720

Query: 656  WTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQS---DRKKNDKGKLSKT 712
             T    +  V   + + RP +    G ++     K    A+ Q      K +  GKL   
Sbjct: 721  HTTSGRLETVSPAVLKPRPMWT---GKQIITTILKNIKPAEYQGLTLTSKSSTNGKLWGV 777

Query: 713  NKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQF-- 769
            +                                  SEE+++I K+  L+ G++DK Q   
Sbjct: 778  H----------------------------------SEEQIVIVKDGHLLSGIMDKGQIGP 803

Query: 770  ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLH 829
            A  GL++ + E YG   AG  LS + RL T  L M  F+CGV+DL++ ++ +R R   L 
Sbjct: 804  AAGGLINGIYEAYGETIAGRALSIIGRLLTKMLHMRAFSCGVEDLILTEEGDRARLEELR 863

Query: 830  GSEEIGKRVHLEALELEDGAEIDPI--KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHT 887
             +E++G  +  + + L D  +IDP   +L+  +E  +R   D      D+ +T+  N   
Sbjct: 864  KAEKLGFEIASKYVTL-DAEKIDPTNPELRRRLEAVLRD--DTKQHGLDL-LTNTANSKI 919

Query: 888  SSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSG 947
            SS+V   +L + L+K   KN +  MT SGAKGS VN  QIS +LGQQ LEG+RVP M+SG
Sbjct: 920  SSAVTAAVLPDKLIKKFPKNQMQAMTGSGAKGSMVNANQISCNLGQQVLEGRRVPVMISG 979

Query: 948  KTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL 1007
            KTLP F P++ + RAGG+I++RFLTG+RPQEYYFH MAGREGL+DTAVKTSRSGYLQRC+
Sbjct: 980  KTLPCFKPFETSVRAGGYIVNRFLTGIRPQEYYFHMMAGREGLIDTAVKTSRSGYLQRCI 1039

Query: 1008 IKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAAR--------ERG 1059
            IK +E L++ YD SVRDADG++VQF YGEDG+D  +  +++ F   A             
Sbjct: 1040 IKGMEGLRVEYDTSVRDADGTMVQFLYGEDGLDTTKQKYLNDFKFQAQNFYSLAQTLHTA 1099

Query: 1060 RGRGRNKFCDKGSHT------FVMGRNQEM-----IYKKCSGQLDASNAYIM---ELPDA 1105
                R    +   H          G    M     +Y         S  ++    E  D 
Sbjct: 1100 EAYPRVASAEAVEHNKKAAKKARKGDVTSMDPATAVYTPSRHSGSTSELFLQAKREYCDT 1159

Query: 1106 LKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNT 1165
              D   K   +    E+ K+ F +++  K++ SL +PGE VG++A QS+GEPSTQMTLNT
Sbjct: 1160 NPDKLLKLKKQDPEGEILKRTFEQMLDLKYLRSLVEPGEAVGVVAGQSIGEPSTQMTLNT 1219

Query: 1166 FHLAGRGEMNVTLGIPRLQEILTIASKDIKTP 1197
            FHLAG    NVTLGIPRL+EI+  AS +I TP
Sbjct: 1220 FHLAGHSAKNVTLGIPRLREIVMTASANISTP 1251


>gi|323450843|gb|EGB06722.1| hypothetical protein AURANDRAFT_65384 [Aureococcus anophagefferens]
          Length = 1610

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 403/1058 (38%), Positives = 541/1058 (51%), Gaps = 161/1058 (15%)

Query: 232  KKQKDLFSGPLLPSDVKDIIEKLWENE-FELCSFIS-DMQQQGFGKKAGHSIFFLGVVLV 289
            +++++LF   L  S+V   +  LW+++   L + +  D+   G G   G+  FFL V+ V
Sbjct: 201  QEKRELF---LTCSEVMKQLMLLWKHDGLALDALLGVDLCATGAGDAGGYRKFFLEVMAV 257

Query: 290  PPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQ--------PDNAKVIVARW 341
            PP +FR     G  + EHPQ V LSKVL  +  +    V+          + A  ++  W
Sbjct: 258  PPPRFRPAQLVGGVMAEHPQNVTLSKVLTLSGEIRGLGVDGDEAKRKSGTEKANKLLELW 317

Query: 342  MNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYL 401
            + LQ  VN   D   ++  +D   GI QLLE+KEGLFR+ +MGKRV++ CRSVISPDP+L
Sbjct: 318  LQLQSEVNNFIDSSKSS-NKDQPPGIKQLLERKEGLFRKHMMGKRVDFCCRSVISPDPFL 376

Query: 402  AVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKK 461
               EIG+P  FA  L+YPE VTP NV  LR  ++NG    PGA ++++     R   +  
Sbjct: 377  GNGEIGLPVRFAKELSYPEPVTPHNVELLRSMVVNGHASWPGA-NWVELKGGGRSRVDLS 435

Query: 462  MRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVV 521
               S+ ++   ++  +  PG+          V RH+ DGD  LVNRQP+LHKPSIMAHV 
Sbjct: 436  RITSVKKRAALAKQLLTTPGQ---------RVGRHVLDGDCFLVNRQPSLHKPSIMAHVA 486

Query: 522  RVLKGE-----KTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            +VL  +     +TLRMHYANC+ YNADFDGDE+N HFPQ E+ RAEA  I   + QYV P
Sbjct: 487  KVLAADSLREHQTLRMHYANCNAYNADFDGDEINCHFPQSELCRAEAKLIAATHEQYVVP 546

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI- 635
            ++G PLR LIQDH+  A  L+  D+F+ RD FCQ+ Y +                RV++ 
Sbjct: 547  TDGKPLRGLIQDHVDCAVKLSMADSFIPRDMFCQMAYET---------------CRVVVG 591

Query: 636  --SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRF 693
              SR +  +  L PAI KP  L+TG+Q+I+ VL H+TR    F    G    +D F   F
Sbjct: 592  DASRVDVRIAGLRPAILKPRVLYTGRQLISLVLAHVTR---RFAASAG----RDDFVQEF 644

Query: 694  NADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLL 753
                                     K+  K E + G  G              L E+ + 
Sbjct: 645  EG-----------------------KAKVKAEAIGGFAG--------------LDEQLVY 667

Query: 754  IYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQ-MHGFTCG 810
            + K  ++RGV+DKA    +  GLVH + ELYG++ A  LL A+SR+FT++L+ + G TCG
Sbjct: 668  VRKGRVLRGVLDKATVGASANGLVHAIYELYGAHAAAVLLDAISRMFTLYLRYVEGHTCG 727

Query: 811  VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEI-DPI---------KLKSEI 860
            + DL++ +  E+ R   +  +E+ G     E L     A + DP           L    
Sbjct: 728  IGDLVLTEKAEQARAALVLKAEQTGLDALKEFLAARRPAGVADPTLAAATPRAATLAQRA 787

Query: 861  EKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGS 920
            E A     D   A  D  M   L     S+++   L  GL     KN  +LM T+GAKGS
Sbjct: 788  ELAAVLSKDGGGAALDGHMQGALAP-AHSAIVKACLPNGLATMFPKNSFALMVTTGAKGS 846

Query: 921  KVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYY 980
             VN  Q+S  LGQQ LEG+RVP M +GK LP F  +D +PRAGGFI DRFLTG+RPQEYY
Sbjct: 847  IVNQSQVSCALGQQSLEGRRVPLMANGKALPCFEAYDQSPRAGGFITDRFLTGVRPQEYY 906

Query: 981  FHCMAGREGLVDTAVKTSRSG---------------YLQRCLIKNLECLKISYDY----S 1021
            FHCMAGREGLVDTA  T R                  ++   +   + LKI  D     +
Sbjct: 907  FHCMAGREGLVDTADHTVRDAEGSVVQFLYGDDGLDVMKTHFLSGAKELKILGDNHRAGA 966

Query: 1022 VRDADGSIVQFCYGEDGVDVHQTSFISKFDAL--AARERGR---GRGRNKFCDKGSH--- 1073
             R+   +     +   G +V         +AL   AR   R   G+GR +   KGS    
Sbjct: 967  SREGPDAANARAHEALGAEVLAARRGYALEALEVGARVDARQIAGKGRTRADLKGSSWSL 1026

Query: 1074 -TFVMGRNQEM----------IYKKCSGQLDASNAYIMELP-----------------DA 1105
             T V  R  ++          + KK    + A     +E+                   A
Sbjct: 1027 ATVVRARGGDVYDVKFDHDGSVMKKAPRTVAAGEGRCVEVLRLAARQPLNARYAPWRFGA 1086

Query: 1106 LKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNT 1165
            + D  E   D     + A  D    V  K+  SLA PGE VG LA+QSVGEPSTQMTLNT
Sbjct: 1087 VSDKLEALLDDLDGGD-AGSDIRAAVYGKYARSLAAPGEAVGALAAQSVGEPSTQMTLNT 1145

Query: 1166 FHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            FHLAG G  NVTLGIPRL+EI+  AS  IKTP IT PL
Sbjct: 1146 FHLAGHGAGNVTLGIPRLREIIMTASDHIKTPQITLPL 1183


>gi|337263094|gb|AEI69258.1| RNA polymerase I largest subunit [Encephalitozoon romaleae]
 gi|396081289|gb|AFN82907.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon romaleae
            SJ-2008]
          Length = 1396

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 365/967 (37%), Positives = 521/967 (53%), Gaps = 170/967 (17%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            LLP  +K++IE L+ NE +L   I   +  GF        FF+  + V P +FR  +   
Sbjct: 221  LLPDVIKELIENLFLNEADLIESIFSTRDPGF--------FFMSNIPVIPNRFRPINIVN 272

Query: 302  DSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQR 361
               +E+PQ++ L+ +L+  I +              ++ W  LQ +V   FD  N     
Sbjct: 273  GKKIENPQSIYLNDILKICISMVKD-----------LSYWPELQGAVLSSFDNSNIKKWH 321

Query: 362  DMAS---GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTY 418
              ++   G  Q+LE+K+GLFR+ +MGKRVN+A R+VISPDP L   EIGIP  FA  LT+
Sbjct: 322  HSSTIPPGHKQILERKDGLFRRNIMGKRVNFAGRTVISPDPNLETREIGIPSIFAEALTF 381

Query: 419  PERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIV 478
            PE VT +NV +L+ +++NG  I+PG+ +  D            + +S+    D  R A+ 
Sbjct: 382  PEGVTSFNVSRLKKAVVNGP-IYPGSLYLQDG----------NVMLSLKHMADEKRYALA 430

Query: 479  QPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS 538
                D       K+V+RHL DGDVVLVNRQPTLH+PSIMAH  RVLKGE+T+RMHYANC 
Sbjct: 431  NQLLDGK-----KVVWRHLVDGDVVLVNRQPTLHRPSIMAHKCRVLKGERTIRMHYANCK 485

Query: 539  TYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTK 598
            +YNADFDGDEMN+HFPQ  VS AEA +IV  +  Y+ P++G+P+R L QDHI+ A +LT 
Sbjct: 486  SYNADFDGDEMNIHFPQTCVSEAEARHIVMNDFNYLAPTDGNPIRGLTQDHIIVATILTM 545

Query: 599  KDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTG 658
            K +F + +++  L+      +SGL       G+R+++ +         P I KP  L++G
Sbjct: 546  KGSFFSEEDYFTLV------NSGLN------GKRIVLDK---------PCILKPIRLYSG 584

Query: 659  KQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKD 718
            KQVI+ ++ ++        VE   K+P D                        T K H +
Sbjct: 585  KQVISTIIKNLGLA---VNVEIETKIPAD------------------------TWKEHSE 617

Query: 719  KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVH 776
            +S                               L I + D++ G++DK         L H
Sbjct: 618  ES------------------------------TLRINEGDIITGILDKNSLGPTFKSLAH 647

Query: 777  TVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGK 836
               E+ G   +  LL+ + R+   FLQM+GFT G+DDL++ +  + +RK  +   ++  +
Sbjct: 648  ACGEVKGFAASNDLLTYVGRVSNRFLQMYGFTVGIDDLILDRKADIKRKMVIDAEDKEAR 707

Query: 837  RVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELL 896
             +  + +E      +                 D   AY D  M +++NK T +S+++  +
Sbjct: 708  NLQKKYVEANPDFYL----------------YDDKKAYLDSVMRAEMNKVT-TSIVDASV 750

Query: 897  SEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPW 956
              GL K    N + L+ T GAKGS VN  QIS  LGQQELEGKRVP M+SGKTLP F   
Sbjct: 751  PSGLKKSFPNNGMELIITVGAKGSIVNLSQISGALGQQELEGKRVPIMISGKTLPCFKSL 810

Query: 957  DWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKI 1016
            D+ P +GG+I   FL G+   +Y+FHCMAGREGL+DTAVKT+ SGYLQRCL+K++E +K+
Sbjct: 811  DFGPSSGGYIYQGFLNGIDLPQYFFHCMAGREGLIDTAVKTANSGYLQRCLVKHMEEVKV 870

Query: 1017 SYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFV 1076
             YD S R     +VQF YGEDG+D  ++S++   +                         
Sbjct: 871  EYDMSAR-MGSKVVQFIYGEDGLDCTKSSYLDDIEFFR---------------------- 907

Query: 1077 MGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFV 1136
              +N  +  +K SG     +     L    KD  EK  D          +  + +  ++V
Sbjct: 908  --KNTVLFKEKESGISKLGDISKGFLSKKFKDQIEKLDD----------ELKRFLTSRYV 955

Query: 1137 LSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKT 1196
             SLA PGE VG++A+QSVGEPSTQMTLNTFHLAG G  NVTLG+PRL+EIL +AS+ IKT
Sbjct: 956  CSLADPGESVGIIAAQSVGEPSTQMTLNTFHLAGVGAKNVTLGVPRLREILLVASRSIKT 1015

Query: 1197 PVITCPL 1203
            P+I  P+
Sbjct: 1016 PLIVVPI 1022



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 42/70 (60%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           CKTC      CPGHFGHI L  PV+NP+LF+ L +++K  CF C HF+ +  +      K
Sbjct: 59  CKTCNLSLLSCPGHFGHIKLPRPVFNPMLFDTLLSIVKCCCFQCKHFRITNYDRLILFCK 118

Query: 61  LELIIKGDII 70
           L L+  G+ I
Sbjct: 119 LSLLKNGEEI 128


>gi|196008945|ref|XP_002114338.1| hypothetical protein TRIADDRAFT_27970 [Trichoplax adhaerens]
 gi|190583357|gb|EDV23428.1| hypothetical protein TRIADDRAFT_27970 [Trichoplax adhaerens]
          Length = 1724

 Score =  587 bits (1513), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 356/854 (41%), Positives = 482/854 (56%), Gaps = 135/854 (15%)

Query: 244  PSDVKDIIEKLWENEFELCSFISDMQQQGFGKK--AGHSIFFLGVVLVPPIKFRLPSKGG 301
            P +V+  + +LW+NE  + + +     +    +  A  + FFL V+ VPP +FR  S  G
Sbjct: 270  PIEVRYHLRQLWKNEKRILTLVFGTFNKLTSNRRIANENSFFLDVIPVPPTRFRPVSTLG 329

Query: 302  DSVMEHPQTVLLSKVLQANIYLANAYVN--QPDNAKV----------------------- 336
            DS  E PQT  L+K+L+ N+ + +   N  Q +N  V                       
Sbjct: 330  DSRFESPQTTNLNKILEDNVVVEDLIDNLKQEENKNVNDHDVKVKSYYFGGRSIKIAGST 389

Query: 337  IVAR----WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACR 392
              AR    W+ LQ  VN   D        D A GI Q+LEKKEGL R+ +MGKRVN+A R
Sbjct: 390  PTARLHNAWLRLQTHVNCFVDSDLDKLSSDKAPGIKQILEKKEGLLRKHMMGKRVNFAAR 449

Query: 393  SVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY----- 447
            SVISPD  +  +E+G+P  FA +LTY + VTP+NV +LR+++ING   HPGAT       
Sbjct: 450  SVISPDLSINCDEVGVPEVFATKLTYCQPVTPFNVRQLRNAVINGPNKHPGATLIEFEDG 509

Query: 448  -LDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVN 506
             + K+S          R ++ ++L T   + V          + K V+RHL DGDVVL+N
Sbjct: 510  NIKKISQHSF----NQRQALAKQLLTPNTSHVG---------QCKKVHRHLVDGDVVLMN 556

Query: 507  RQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNI 566
            RQPTLH+PSIMAH VRVL GEKTLR+HYANC  YNADFDGDEMN+H PQ E+SRAEAY I
Sbjct: 557  RQPTLHRPSIMAHKVRVLPGEKTLRLHYANCKCYNADFDGDEMNMHVPQSELSRAEAYTI 616

Query: 567  VNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFT 626
             +   QY+ P +G P+  LIQDH+VS+  L  +     ++++ QL+Y +          T
Sbjct: 617  ASTKYQYLLPKDGKPISGLIQDHMVSSVKLMIRGRMFTKEQYFQLIYFA---------LT 667

Query: 627  GKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI-TAVLNHITRGRPPFVVERGGKLP 685
             K G           +LP  P I KP  LW+GKQV+ T +LN + +   P  +    K+ 
Sbjct: 668  DKDG--------PIHLLP--PCIIKPRQLWSGKQVLSTLLLNILPKNSTPLNMLGKSKI- 716

Query: 686  QDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEK 745
                     ADK            S  N   K KS   K + +                +
Sbjct: 717  ---------ADK------------SWVNTRMKKKSRYYKPLYD----------------E 739

Query: 746  ELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQ 803
             LSE +++I + +L+ G++DKA F    YGLVH   ELYG +T+ T LS++S+L T FLQ
Sbjct: 740  ILSESQVVIRQGELLCGILDKAHFGATSYGLVHCCYELYGGDTSTTFLSSVSKLLTKFLQ 799

Query: 804  MHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG---------AEIDPI 854
            M+GFT G++D+L+ +D +  R+  +      G ++  EA  +            A +   
Sbjct: 800  MNGFTLGIEDILVRQDADNLRQQFIKDCASSGNKIAKEAFNVNSKSLVQEKFCQAHLKNK 859

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
             L +E+E  M+   D          T+++NK  + +        GLLK   +N + LM  
Sbjct: 860  DLLAELESHMKRNTD--------HFTNEINKACTGA--------GLLKLFPENNLQLMVQ 903

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS VN  QIS  LGQ ELEGKR P M+SG++LPSF P+D +PRAGGF+ +RFL+GL
Sbjct: 904  SGAKGSTVNCMQISCLLGQIELEGKRPPLMISGRSLPSFTPYDTSPRAGGFVDNRFLSGL 963

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
            RPQEY+FHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE L + YD +VRD DGS++QF Y
Sbjct: 964  RPQEYFFHCMAGREGLVDTAVKTSRSGYLQRCLVKHLEGLVVQYDLTVRDTDGSVIQFQY 1023

Query: 1035 GEDGVDVHQTSFIS 1048
            GED VDV  T F+S
Sbjct: 1024 GEDSVDVTNTQFLS 1037



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/78 (66%), Positives = 64/78 (82%)

Query: 1126 DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1185
            +F K++  KF+ +L +PG PVGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+E
Sbjct: 1209 NFRKMMHLKFMRALVEPGCPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLRE 1268

Query: 1186 ILTIASKDIKTPVITCPL 1203
            IL + S +IKTP +   L
Sbjct: 1269 ILMVGSPNIKTPSMIVIL 1286



 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 42/67 (62%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCGQ    CPGHFGHIDL +PVY+PL F  +  LLK +CF CHH   +   +   V +
Sbjct: 66  CSTCGQIMDYCPGHFGHIDLHLPVYHPLFFKHMLMLLKGMCFQCHHLHGTPAALNLFVCQ 125

Query: 61  LELIIKG 67
           L+L+  G
Sbjct: 126 LKLLEYG 132


>gi|183985780|gb|AAI66364.1| LOC100158635 protein [Xenopus (Silurana) tropicalis]
          Length = 1424

 Score =  587 bits (1512), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 345/853 (40%), Positives = 485/853 (56%), Gaps = 120/853 (14%)

Query: 240  GPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKA-GHSIFFLGVVLVPPIKFRLP 297
            G L P+  K++I+ LWENE F L    S +   G G+ A     FFL +++VPP ++R  
Sbjct: 258  GYLTPNSTKELIKALWENEGFFLQHLFSGIT--GNGESAFTPDTFFLDIIVVPPSRYRPV 315

Query: 298  SKGGDSVMEHPQTVLLSKVLQ------------------------ANIYLANAYVNQPDN 333
            ++ GD V  +  TV L  VL+                        + + L    V +  +
Sbjct: 316  NRLGDQVFTNGHTVNLQAVLKDVSMIQKLLAVMAQDQEQMPEVTKSGMSLKEGEVTENID 375

Query: 334  AKVIVA------------RWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQK 381
               +               W+ LQ  VN++FD        +   GI Q+LEKKEGLFR+ 
Sbjct: 376  RSFLATLMGQSLTDKLYNSWVRLQSHVNIVFDSDMDKLMTEKYPGIRQVLEKKEGLFRKH 435

Query: 382  LMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIH 441
            +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR +++NG  +H
Sbjct: 436  MMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVMNGPNVH 495

Query: 442  PGATHYL--DKLSTMRLPPNKKMRISIGRKLDT-SRGAIVQPGKDSDNEFEGKMVYRHLQ 498
            PGA+  +  D   T+    N   R ++ ++L T S GA              K+V RH++
Sbjct: 496  PGASMVISEDGSRTILNSSNVSQREAVAKQLLTPSTGA---------QTLAAKIVCRHVK 546

Query: 499  DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
            +GDV+L+NRQPTLH+PSI AH  R+L GEK LR+HYANC  YNADFDGDEMN HFPQ E+
Sbjct: 547  NGDVLLLNRQPTLHRPSIQAHKARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSEL 606

Query: 559  SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
             RAEAY++   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y     
Sbjct: 607  GRAEAYSLACTDEQYLVPKDGTPLAGLIQDHMVSGANMTIRGCFFTREQYMELVY----- 661

Query: 619  SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVV 678
                        Q +   R   +VLP  PAI KP PLWTGKQV++ +L ++         
Sbjct: 662  ------------QGLTDKRGRVKVLP--PAILKPYPLWTGKQVVSTLLINV--------- 698

Query: 679  ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 738
                 +P++                     L+ T K         KE     PG   ++ 
Sbjct: 699  -----IPENLI------------------PLNLTGKAKISGKAWVKEQPRPIPGFSPDS- 734

Query: 739  KNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSR 796
                    + E +++I   +L+ GV+DKA +  + +GLVH   ELYG  T+G LL+ L+R
Sbjct: 735  --------MCESQVIIRDGELLCGVLDKAHYGSSSFGLVHCCYELYGGETSGKLLTCLAR 786

Query: 797  LFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIK 855
            LFT +LQ++ GFT GV+D+L+L   + +R N +  S   G +    A  L + A  +   
Sbjct: 787  LFTAYLQLYRGFTLGVEDILVLPYADAQRLNIVQQSLHCGGKAIRAAFNLSEAASDEEAH 846

Query: 856  LKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL-LSEGLLKPTGKNWISLMTT 914
             K +     +   D  +   D+K   ++N+  +   IN++ +  GL +P  +N + LM  
Sbjct: 847  GKWQDAHLSKDQRDFNMV--DLKFKEEVNQFNNE--INKVCMPFGLHRPFPENNLQLMVQ 902

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS VN  QIS  LGQ ELEG+R P M SG++LP F P+D++PR+GGF+  RFLTG+
Sbjct: 903  SGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGRSLPCFQPYDFSPRSGGFVTGRFLTGI 962

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
            +P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS++QF Y
Sbjct: 963  KPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVIQFLY 1022

Query: 1035 GEDGVDVHQTSFI 1047
            GEDG+DV +T F+
Sbjct: 1023 GEDGLDVPKTQFL 1035



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/80 (67%), Positives = 67/80 (83%), Gaps = 1/80 (1%)

Query: 1126 DFLKLVKH-KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
            D LK + H K+  +L  PG+ VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+
Sbjct: 1193 DSLKTLLHLKWQRALCDPGDAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR 1252

Query: 1185 EILTIASKDIKTPVITCPLL 1204
            EIL +AS +IKTP+++ P+L
Sbjct: 1253 EILMVASANIKTPMMSVPVL 1272



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 43/76 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q    CPGH GHI+L + VYNPL F+ LY L++  CF CH     R  +   + +
Sbjct: 64  CSTCAQDFNNCPGHLGHIELPLTVYNPLFFDKLYLLVRGSCFHCHLLTCHRSVIHLLLNQ 123

Query: 61  LELIIKGDIIAAKSLD 76
           L+++ +G +     L+
Sbjct: 124 LKVLDRGAVHEVHELE 139


>gi|256073012|ref|XP_002572827.1| DNA-directed RNA polymerase I [Schistosoma mansoni]
          Length = 1784

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 435/1305 (33%), Positives = 630/1305 (48%), Gaps = 211/1305 (16%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C  CG     CPGH GHI+   PV+NP +F++LY ++K  CF C    ++    E     
Sbjct: 62   CAHCGMDFTDCPGHCGHIEFSKPVFNPFMFDVLYKIVKSFCFGCFRLYSA----EYLASA 117

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
            L L+  G  +        LP +    E  ++   S           D++R +  +   + 
Sbjct: 118  LYLL--GAPVG------KLPGKLKTLEIKELEGLSG----------DDLRQVAIRNLATR 159

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKP--TFGWIHMNGMPHADIR--------- 169
              A  KL            CG+       ISK    F  I + G   +  R         
Sbjct: 160  PRAPCKL------------CGSGSWGLRHISKQQLVFHPISIVGSNRSKARMKEELEEDC 207

Query: 170  ANLIRGCNLGETFSGGEEEKDLGASSDV-DAPETHSFNGTFPGTQDTAARRHQKGSGAVP 228
            ++L+ GC + +       E++L    D+ D  E       +     TA       S A+ 
Sbjct: 208  SDLLEGCKVDDQ----RMEQNLSLFIDMSDGSEASKAEAVYTANLSTA---RNMLSEAIK 260

Query: 229  SGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHS----IFFL 284
            S    ++  F     P  ++ ++  LW ++ +L   +  M Q     +  H+    +FF+
Sbjct: 261  SQQHSKEICFP----PEMIRVMLRCLWAHDGDLLVLLFPMLQ---AARLNHTFPTDVFFM 313

Query: 285  GVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY--------------VNQ 330
              VL+ P   R P   G+ V EHP+T +  ++++    L N                VN+
Sbjct: 314  DNVLLSPSLCRWPRHVGNLVYEHPETAVYVRIVKRAQCLHNIVEFIRQHNEVSNSVDVNK 373

Query: 331  P-------------DNAK---VIVARWMNLQQSVNVLFDGKNAAGQRDMAS--------- 365
            P             D+A+    +    + LQ +VN ++D   A     + S         
Sbjct: 374  PVEPKSTTSNGDLIDDAQSDGALKLATVLLQAAVNGIYDMNMAITPLGLESRNGISSNSV 433

Query: 366  ---GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERV 422
               G+ Q LE+KEGLFR  +MGKRVN+ACRSVISPDP L+V E+G+P +FA RLT+P  V
Sbjct: 434  RLPGLRQRLERKEGLFRMHMMGKRVNFACRSVISPDPNLSVTEVGVPLFFAFRLTFPTPV 493

Query: 423  TPWNVVKLRDSIINGAEIHPGAT--HYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP 480
            T +N+V LR  ++NG   +PGAT   + + + TM LP N   +    R++   R   +  
Sbjct: 494  TKFNLVHLRQLVMNGPNNYPGATSIQFSNGVITM-LPQNDTPQAKKKREMLALRLKPLIS 552

Query: 481  GKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLK--GEKTLRMHYANCS 538
            GKD+       +V RHL DGD++++NRQPTLH+PS+ AH VR++K  G KTLR+HY+NC 
Sbjct: 553  GKDNI----PIVVNRHLLDGDMLIMNRQPTLHRPSMQAHRVRIIKCVGAKTLRLHYSNCK 608

Query: 539  TYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTK 598
             YNADFDGDEMN HF Q   ++AE   + +  +QY+ P +G PL  LIQDH+++A  LT 
Sbjct: 609  AYNADFDGDEMNGHFVQSYAAKAELETLASVPHQYLVPKDGTPLAGLIQDHVIAAVKLTM 668

Query: 599  KDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTG 658
            +D F    ++  L+Y +      + S T         S     ++ + PAI  P+ LWTG
Sbjct: 669  RDRFFEHADYLDLVYHALRPLFAINSQT---------SSGPPSIITIKPAICWPKCLWTG 719

Query: 659  KQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKD 718
            KQVI+ +L ++T           G LP                       L+ T    + 
Sbjct: 720  KQVISTLLINLT---------PTGLLP-----------------------LNATLIGRRT 747

Query: 719  KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVH 776
            K+     V  G P               LS+  L+I    L  G++DK+    +  GL+H
Sbjct: 748  KAELWSGVAPGGP-------------TPLSDVDLVICDGYLASGMLDKSHIGSSSTGLIH 794

Query: 777  TVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGK 836
             V E YG  +A  LL+ +S L   FL+   FT G+ D+L+    + ER+      +++G 
Sbjct: 795  CVYEAYGPESASCLLNGISLLANRFLKFIAFTMGLKDILLSHRADEERQRRFSNLKDLGL 854

Query: 837  RVHLEALELEDG----AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVI 892
                +   L+      + +  +  +++   +        +A  DM +  +L K    +V 
Sbjct: 855  CAFADTFSLKPDELTESNVKRLYRQAQFPSSTDQSSLKRLAQLDMAIKDRL-KRAQDAVC 913

Query: 893  NELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPS 952
            +  +  GL     +N + LM   GAKG  VN QQ+S  LGQ ELEG+RVP M+SGKTLPS
Sbjct: 914  DSAIPGGLYVGFPENNLQLMVHVGAKGGMVNAQQMSVALGQIELEGRRVPLMLSGKTLPS 973

Query: 953  FHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 1012
            F P+D  PRAGG    RFLT L  QE +FH MAGR+GLVDTAVKTSRSGYLQR  IK+LE
Sbjct: 974  FPPYDVRPRAGGMCTARFLTSLPAQELFFHSMAGRDGLVDTAVKTSRSGYLQRSAIKHLE 1033

Query: 1013 CLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKF-------DALAARERGRGRGRN 1065
             L ISYD +VRD+  +I+QF YG+DGVDV Q  F+          +    + R      N
Sbjct: 1034 DLSISYDGTVRDSGSNIIQFRYGDDGVDVCQAGFLQPIGLHFFADNINLMKIRWHSDKIN 1093

Query: 1066 KFCDKGSHTF---------------VMGRNQEMIYKKCS----------GQLDASNAYIM 1100
                  +H F               V  + Q +++K  S          G++      IM
Sbjct: 1094 TDNPAYAHLFEKNILPKPIQMMADQVGVKRQGILHKTVSRHKLAKLFNIGKMAHKALKIM 1153

Query: 1101 ELPDALKDNAEKFADKFLSNE--MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPS 1158
            E    +    +K  ++ +      A  +   L   K + + A PG+PVGLLA+QSVGEPS
Sbjct: 1154 ETEQQVS-GKDKIMNEIIPEPPCAAAAELRDLCLAKIINAQAPPGDPVGLLAAQSVGEPS 1212

Query: 1159 TQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            TQMTLNTFH AGRGEMNVTLGIPRL+EIL   S +I TP +  P+
Sbjct: 1213 TQMTLNTFHFAGRGEMNVTLGIPRLREILMSGSSNISTPCMEVPI 1257


>gi|360042899|emb|CCD78309.1| putative dna-directed rna polymerase I largest subunit [Schistosoma
            mansoni]
          Length = 1775

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 434/1305 (33%), Positives = 627/1305 (48%), Gaps = 211/1305 (16%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C  CG     CPGH GHI+   PV+NP +F++LY ++K  CF C    ++    E     
Sbjct: 62   CAHCGMDFTDCPGHCGHIEFSKPVFNPFMFDVLYKIVKSFCFGCFRLYSA----EYLASA 117

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
            L L+  G  +        LP +    E  ++   S           D++R +  +   + 
Sbjct: 118  LYLL--GAPVG------KLPGKLKTLEIKELEGLSG----------DDLRQVAIRNLATR 159

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKP--TFGWIHMNGMPHADIR--------- 169
              A  KL            CG+       ISK    F  I + G   +  R         
Sbjct: 160  PRAPCKL------------CGSGSWGLRHISKQQLVFHPISIVGSNRSKARMKEELEEDC 207

Query: 170  ANLIRGCNLGETFSGGEEEKDLGASSDV-DAPETHSFNGTFPGTQDTAARRHQKGSGAVP 228
            ++L+ GC + +       E++L    D+ D  E       +     TA       S A+ 
Sbjct: 208  SDLLEGCKVDDQ----RMEQNLSLFIDMSDGSEASKAEAVYTANLSTA---RNMLSEAIK 260

Query: 229  SGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHS----IFFL 284
            S    ++  F     P  ++ ++  LW ++ +L   +  M Q     +  H+    +FF+
Sbjct: 261  SQQHSKEICFP----PEMIRVMLRCLWAHDGDLLVLLFPMLQ---AARLNHTFPTDVFFM 313

Query: 285  GVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY--------------VNQ 330
              VL+ P   R P   G+ V EHP+T +  ++++    L N                VN+
Sbjct: 314  DNVLLSPSLCRWPRHVGNLVYEHPETAVYVRIVKRAQCLHNIVEFIRQHNEVSNSVDVNK 373

Query: 331  PDNAKVIVAR----------------WMNLQQSVNVLFDGKNAAGQRDMAS--------- 365
            P   K   +                  + LQ +VN ++D   A     + S         
Sbjct: 374  PVEPKSTTSNGDLIDDAQSDGALKLATVLLQAAVNGIYDMNMAITPLGLESRNGISSNSV 433

Query: 366  ---GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERV 422
               G+ Q LE+KEGLFR  +MGKRVN+ACRSVISPDP L+V E+G+P +FA RLT+P  V
Sbjct: 434  RLPGLRQRLERKEGLFRMHMMGKRVNFACRSVISPDPNLSVTEVGVPLFFAFRLTFPTPV 493

Query: 423  TPWNVVKLRDSIINGAEIHPGAT--HYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP 480
            T +N+V LR  ++NG   +PGAT   + + + TM LP N   +    R++   R   +  
Sbjct: 494  TKFNLVHLRQLVMNGPNNYPGATSIQFSNGVITM-LPQNDTPQAKKKREMLALRLKPLIS 552

Query: 481  GKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLK--GEKTLRMHYANCS 538
            GKD+       +V RHL DGD++++NRQPTLH+PS+ AH VR++K  G KTLR+HY+NC 
Sbjct: 553  GKDNI----PIVVNRHLLDGDMLIMNRQPTLHRPSMQAHRVRIIKCVGAKTLRLHYSNCK 608

Query: 539  TYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTK 598
             YNADFDGDEMN HF Q   ++AE   + +  +QY+ P +G PL  LIQDH+++A  LT 
Sbjct: 609  AYNADFDGDEMNGHFVQSYAAKAELETLASVPHQYLVPKDGTPLAGLIQDHVIAAVKLTM 668

Query: 599  KDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTG 658
            +D F    ++  L+Y +      + S T         S     ++ + PAI  P+ LWTG
Sbjct: 669  RDRFFEHADYLDLVYHALRPLFAINSQT---------SSGPPSIITIKPAICWPKCLWTG 719

Query: 659  KQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKD 718
            KQVI+ +L ++T           G LP                       L+ T    + 
Sbjct: 720  KQVISTLLINLT---------PTGLLP-----------------------LNATLIGRRT 747

Query: 719  KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVH 776
            K+     V  G P               LS+  L+I    L  G++DK+    +  GL+H
Sbjct: 748  KAELWSGVAPGGP-------------TPLSDVDLVICDGYLASGMLDKSHIGSSSTGLIH 794

Query: 777  TVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGK 836
             V E YG  +A  LL+ +S L   FL+   FT G+ D+L+    + ER+      +++G 
Sbjct: 795  CVYEAYGPESASCLLNGISLLANRFLKFIAFTMGLKDILLSHRADEERQRRFSNLKDLGL 854

Query: 837  RVHLEALELEDG----AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVI 892
                +   L+      + +  +  +++   +        +A  DM +  +L K    +V 
Sbjct: 855  CAFADTFSLKPDELTESNVKRLYRQAQFPSSTDQSSLKRLAQLDMAIKDRL-KRAQDAVC 913

Query: 893  NELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPS 952
            +  +  GL     +N + LM   GAKG  VN QQ+S  LGQ ELEG+RVP M+SGKTLPS
Sbjct: 914  DSAIPGGLYVGFPENNLQLMVHVGAKGGMVNAQQMSVALGQIELEGRRVPLMLSGKTLPS 973

Query: 953  FHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 1012
            F P+D  PRAGG    RFLT L  QE +FH MAGR+GLVDTAVKTSRSGYLQR  IK+LE
Sbjct: 974  FPPYDVRPRAGGMCTARFLTSLPAQELFFHSMAGRDGLVDTAVKTSRSGYLQRSAIKHLE 1033

Query: 1013 CLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKF-------DALAARERGRGRGRN 1065
             L ISYD +VRD+  +I+QF YG+DGVDV Q  F+          +    + R      N
Sbjct: 1034 DLSISYDGTVRDSGSNIIQFRYGDDGVDVCQAGFLQPIGLHFFADNINLMKIRWHSDKIN 1093

Query: 1066 KFCDKGSHTF---------------VMGRNQEMIYKKCS----------GQLDASNAYIM 1100
                  +H F               V  + Q +++K  S          G++      IM
Sbjct: 1094 TDNPAYAHLFEKNILPKPIQMMADQVGVKRQGILHKTVSRHKLAKLFNIGKMAHKALKIM 1153

Query: 1101 ELPDALKDNAEKFADKFLSNE--MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPS 1158
            E    +    +K  ++ +      A  +   L   K + + A PG+PVGLLA+QSVGEPS
Sbjct: 1154 ETEQQVS-GKDKIMNEIIPEPPCAAAAELRDLCLAKIINAQAPPGDPVGLLAAQSVGEPS 1212

Query: 1159 TQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            TQMTLNTFH AGRGEMNVTLGIPRL+EIL   S +I TP +  P+
Sbjct: 1213 TQMTLNTFHFAGRGEMNVTLGIPRLREILMSGSSNISTPCMEVPI 1257


>gi|345782345|ref|XP_532976.3| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Canis lupus
            familiaris]
          Length = 1717

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 340/875 (38%), Positives = 489/875 (55%), Gaps = 121/875 (13%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGV 286
            P G ++ +    G L P+  ++ +  LW+NE F L    S ++      +   S+FFL  
Sbjct: 242  PLGIEETQLGKRGYLTPTSAREHLTALWKNEGFFLNYLFSGLEDVDMESRFNPSVFFLDF 301

Query: 287  VLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYV-----------------N 329
            ++VPP ++R  ++ GD +  + QTV L  V++  + +                      +
Sbjct: 302  LVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDMVLIRKLLALMAQEQELPCEVSGPAKD 361

Query: 330  QPDNAKVIVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLL 371
            +  ++ + + R                  W+ LQ  VN++FD +      +   GI Q+L
Sbjct: 362  EEKDSSIALDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQIL 421

Query: 372  EKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLR 431
            EKK+GLFR+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR
Sbjct: 422  EKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELR 481

Query: 432  DSIINGAEIHPGATHYLDK------LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSD 485
             ++ING  +HPGA+  +++      LS + L      R ++ ++L T       P   + 
Sbjct: 482  QAVINGPNVHPGASMVINEDGSRTALSAIDL----TQREAVAKQLLT-------PATGAP 530

Query: 486  NEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
                 K+V RH+++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFD
Sbjct: 531  KPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFD 590

Query: 546  GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
            GDEMN HFPQ E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R
Sbjct: 591  GDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTR 650

Query: 606  DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
            +++ +LLY            T K G+  L            PAI KP PLWTGKQV++ +
Sbjct: 651  EQYMELLYR---------GLTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTL 691

Query: 666  LNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKE 725
            L +I              +P+D                     LS + K         +E
Sbjct: 692  LINI--------------IPEDHI------------------PLSLSGKAKISGKAWVQE 719

Query: 726  VVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYG 783
                 PG   ++         + E +++I + +L+ GV+DKA +    YGLVH   E+YG
Sbjct: 720  SPRPVPGFNPDS---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYG 770

Query: 784  SNTAGTLLSALSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEA 842
              T+G +L+ L+RLFT +LQ++ GFT GV+D+L+ +  + +R   +  S   G R    A
Sbjct: 771  GETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKRKADMKRHLVIEESTHCGPRAVRAA 830

Query: 843  LELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLK 902
            L L + A  D ++ K   + A  G         D+K   ++N H S+ +    +  GL +
Sbjct: 831  LNLPEAASCDEVRGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHR 887

Query: 903  PTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRA 962
                N + +M  SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRA
Sbjct: 888  QFPDNNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRA 947

Query: 963  GGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSV 1022
            GGF+  RFLTG++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +V
Sbjct: 948  GGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTV 1007

Query: 1023 RDADGSIVQFCYGEDGVDVHQTSFIS--KFDALAA 1055
            RD+DGS+VQF YGEDG+D+ +T F+   +F  LA+
Sbjct: 1008 RDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 70/91 (76%)

Query: 1117 FLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNV 1176
            +  +E++      L++ K+  SL  PGE VGLLA+QS+GEPSTQMTLNTFH AGRGEMNV
Sbjct: 1182 YKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNV 1241

Query: 1177 TLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            TLGIPRL+EIL +AS +IKTP+++ P+   K
Sbjct: 1242 TLGIPRLREILMVASANIKTPMMSVPVFNTK 1272



 Score = 45.8 bits (107), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 41/76 (53%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   V +
Sbjct: 64  CSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQ 123

Query: 61  LELIIKGDIIAAKSLD 76
           L ++  G + A   L+
Sbjct: 124 LRVLEVGALQAVYELE 139


>gi|395853511|ref|XP_003799250.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform 1
            [Otolemur garnettii]
          Length = 1720

 Score =  584 bits (1506), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 340/863 (39%), Positives = 488/863 (56%), Gaps = 121/863 (14%)

Query: 240  GPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS 298
            G L P+  ++ +  LW+NE F L    S +   G       S+FFL  ++VPP ++R  +
Sbjct: 254  GYLTPTSAREHLFSLWKNEGFFLNYLFSGLDDVGTESAFNPSMFFLDFLVVPPSRYRPVN 313

Query: 299  KGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKVIVAR- 340
            + GD +  + QTV L  V++  + +                 A    ++  ++   + R 
Sbjct: 314  RLGDQMFTNGQTVNLQAVMKDIVLIRKLLALMAQEQKLPWEVAIPTTDEEKDSTTGIDRS 373

Query: 341  -----------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLM 383
                             W+ LQ  VN++FD +      +   GI Q+LEKKEGLFR+ +M
Sbjct: 374  FLSALPGQALTDKLYNIWIRLQSHVNIVFDSEMDKLTVEKYPGIRQILEKKEGLFRKHMM 433

Query: 384  GKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPG 443
            GKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING  +HPG
Sbjct: 434  GKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPGVHPG 493

Query: 444  ATHYLDK------LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
            A+  +++      LST+ +      R ++ ++L T       P   +      K+V RH+
Sbjct: 494  ASMVINEDGSRTALSTVDI----SQREAVAKQLLT-------PATGAPKPQGTKIVCRHV 542

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            ++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ+E
Sbjct: 543  KNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQNE 602

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
            + RAEAY +   + QY+ P +G PL  LIQDH+VS   +T +  F  R+++ +L+Y    
Sbjct: 603  LGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGTSMTTRCCFFTREQYMELVYR--- 659

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
                    T K G+  L            PAI KP PLWTGKQV++ +L +I        
Sbjct: 660  ------GLTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI-------- 695

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEA 737
                  +P+D      +           K K+S+   +        KE     PG + ++
Sbjct: 696  ------IPEDHIPLNLSG----------KAKISEKAWV--------KEPPRPVPGFDPDS 731

Query: 738  EKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALS 795
                     + E +++I + +L+ GV+DKAQ+    YGLVH   E+YG  T+G +L+ L+
Sbjct: 732  ---------MCESQVIIREGELLCGVLDKAQYGSSAYGLVHCCYEIYGGETSGRVLTCLA 782

Query: 796  RLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
            RLFT +LQ++ GFT GV+D+L+    + +R+  +  S   G R    AL L +    D +
Sbjct: 783  RLFTAYLQLYRGFTLGVEDILVKPKADAKRQEIIEESTHCGPRAVRAALNLPEATSCDEV 842

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
            + K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M  
Sbjct: 843  QEK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENNLQMMVQ 899

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG+
Sbjct: 900  SGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGI 959

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
             P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF Y
Sbjct: 960  NPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLY 1019

Query: 1035 GEDGVDVHQTSFIS--KFDALAA 1055
            GEDG+D+ +T F+   +F  LA+
Sbjct: 1020 GEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  114 bits (285), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 78/111 (70%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL  PGE VGLLA+QS
Sbjct: 1159 VSETFEKKIDDYSQEWAAQAEKSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQS 1218

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+ 
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF 1269



 Score = 47.4 bits (111), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   V +
Sbjct: 64  CSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQ 123

Query: 61  LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNK 94
           L+++  G + A   L+  L     E++NP   ++  +
Sbjct: 124 LKVLEVGALQAVYELEQILNRFLEENANPSAFEIQEE 160


>gi|395853513|ref|XP_003799251.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 isoform 2
            [Otolemur garnettii]
          Length = 1668

 Score =  584 bits (1505), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 340/863 (39%), Positives = 488/863 (56%), Gaps = 121/863 (14%)

Query: 240  GPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS 298
            G L P+  ++ +  LW+NE F L    S +   G       S+FFL  ++VPP ++R  +
Sbjct: 254  GYLTPTSAREHLFSLWKNEGFFLNYLFSGLDDVGTESAFNPSMFFLDFLVVPPSRYRPVN 313

Query: 299  KGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKVIVAR- 340
            + GD +  + QTV L  V++  + +                 A    ++  ++   + R 
Sbjct: 314  RLGDQMFTNGQTVNLQAVMKDIVLIRKLLALMAQEQKLPWEVAIPTTDEEKDSTTGIDRS 373

Query: 341  -----------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLM 383
                             W+ LQ  VN++FD +      +   GI Q+LEKKEGLFR+ +M
Sbjct: 374  FLSALPGQALTDKLYNIWIRLQSHVNIVFDSEMDKLTVEKYPGIRQILEKKEGLFRKHMM 433

Query: 384  GKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPG 443
            GKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING  +HPG
Sbjct: 434  GKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPGVHPG 493

Query: 444  ATHYLDK------LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
            A+  +++      LST+ +      R ++ ++L T       P   +      K+V RH+
Sbjct: 494  ASMVINEDGSRTALSTVDI----SQREAVAKQLLT-------PATGAPKPQGTKIVCRHV 542

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            ++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ+E
Sbjct: 543  KNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQNE 602

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
            + RAEAY +   + QY+ P +G PL  LIQDH+VS   +T +  F  R+++ +L+Y    
Sbjct: 603  LGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGTSMTTRCCFFTREQYMELVYR--- 659

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
                    T K G+  L            PAI KP PLWTGKQV++ +L +I        
Sbjct: 660  ------GLTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI-------- 695

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEA 737
                  +P+D      +           K K+S+   +        KE     PG + ++
Sbjct: 696  ------IPEDHIPLNLSG----------KAKISEKAWV--------KEPPRPVPGFDPDS 731

Query: 738  EKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALS 795
                     + E +++I + +L+ GV+DKAQ+    YGLVH   E+YG  T+G +L+ L+
Sbjct: 732  ---------MCESQVIIREGELLCGVLDKAQYGSSAYGLVHCCYEIYGGETSGRVLTCLA 782

Query: 796  RLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
            RLFT +LQ++ GFT GV+D+L+    + +R+  +  S   G R    AL L +    D +
Sbjct: 783  RLFTAYLQLYRGFTLGVEDILVKPKADAKRQEIIEESTHCGPRAVRAALNLPEATSCDEV 842

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
            + K   + A  G         D+K   ++N H S+ +    +  GL +   +N + +M  
Sbjct: 843  QEK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENNLQMMVQ 899

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG+
Sbjct: 900  SGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGI 959

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
             P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF Y
Sbjct: 960  NPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLY 1019

Query: 1035 GEDGVDVHQTSFIS--KFDALAA 1055
            GEDG+D+ +T F+   +F  LA+
Sbjct: 1020 GEDGLDIPKTQFLQPKQFPFLAS 1042



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 78/111 (70%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL  PGE VGLLA+QS
Sbjct: 1159 VSETFEKKIDDYSQEWAAQAEKSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQS 1218

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+ 
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF 1269



 Score = 47.4 bits (111), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   V +
Sbjct: 64  CSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQ 123

Query: 61  LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNK 94
           L+++  G + A   L+  L     E++NP   ++  +
Sbjct: 124 LKVLEVGALQAVYELEQILNRFLEENANPSAFEIQEE 160


>gi|410955237|ref|XP_003984263.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Felis catus]
          Length = 1718

 Score =  584 bits (1505), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 337/859 (39%), Positives = 482/859 (56%), Gaps = 113/859 (13%)

Query: 240  GPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS 298
            G L P+  ++ +  LW+NE F L      ++  G   +   S+FFL  ++VPP ++R  +
Sbjct: 254  GYLTPTSAREHLIALWKNEGFFLNYLFLGLEDVGMESRFNPSMFFLDFLVVPPSRYRPVN 313

Query: 299  KGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKVIVAR- 340
            + GD +  + QTV L  V++  + +                 A    ++  ++ + + R 
Sbjct: 314  RLGDQMFTNGQTVNLQAVMKDMVLIRKLLALMAQEQELPCEVAAPAKDEEKDSSIALDRS 373

Query: 341  -----------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLM 383
                             W+ LQ  VN++FD +      +   GI Q+LEKK+GLFR+ +M
Sbjct: 374  FLSTLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQILEKKDGLFRKHMM 433

Query: 384  GKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPG 443
            GKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING  +HPG
Sbjct: 434  GKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG 493

Query: 444  ATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGD 501
            A+  +  D   T     +   R ++ ++L T       P   +      K+V RH+++GD
Sbjct: 494  ASMVINEDGSRTALSAVDLTQREAVAKQLLT-------PATGAPKPQGTKIVCRHVKNGD 546

Query: 502  VVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRA 561
            ++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ E+ RA
Sbjct: 547  ILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRA 606

Query: 562  EAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSG 621
            EAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +LLY        
Sbjct: 607  EAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTTRGCFFTREQYMELLYR------- 659

Query: 622  LGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERG 681
                T K G+  L            PAI KP PLWTGKQV++ +L +I            
Sbjct: 660  --GLTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI------------ 695

Query: 682  GKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNK 741
              +P+D                     LS + K         +E     PG   ++    
Sbjct: 696  --IPEDHI------------------PLSLSGKAKISGKAWVQESPRPVPGFNPDS---- 731

Query: 742  SKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFT 799
                 + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L+RLFT
Sbjct: 732  -----MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFT 786

Query: 800  VFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKS 858
             +LQ++ GFT GV+D+L+    + +R   +  S   G R    AL L + A  D ++ K 
Sbjct: 787  AYLQLYRGFTLGVEDILVKPKADVKRHRVIEESTHCGPRAVRAALNLPEAASCDEVRGK- 845

Query: 859  EIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAK 918
              + A  G         D+K   ++N H ++ +    +  GL +   +N + +M  SGAK
Sbjct: 846  -WQDAHLGKDQRDFNMIDLKFKEEVN-HYNNEINKACMPFGLHRQFPENNLQMMVQSGAK 903

Query: 919  GSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQE 978
            GS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG++P E
Sbjct: 904  GSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPE 963

Query: 979  YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDG 1038
            ++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF YGEDG
Sbjct: 964  FFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDG 1023

Query: 1039 VDVHQTSFIS--KFDALAA 1055
            +D+ +T F+   +F  LA+
Sbjct: 1024 LDIPKTQFLQPKQFPFLAS 1042



 Score =  113 bits (282), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 74/98 (75%), Gaps = 3/98 (3%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            AEK  +K   +E++      L++ K+  SL  PGE VGLLA+QS+GEPSTQMTLNTFH A
Sbjct: 1178 AEKSYEK---SELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFA 1234

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            GRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+   K
Sbjct: 1235 GRGEMNVTLGIPRLREILMVASANIKTPMMSVPVFNTK 1272



 Score = 49.7 bits (117), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 42/76 (55%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q    CPGH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   V +
Sbjct: 64  CSTCVQDFNSCPGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQ 123

Query: 61  LELIIKGDIIAAKSLD 76
           L ++  G + A   L+
Sbjct: 124 LRVLEVGALQAVYELE 139


>gi|45181571|gb|AAS55436.1| RNA polymerase I largest subunit [Podocarpus macrophyllus]
          Length = 550

 Score =  583 bits (1504), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 323/621 (52%), Positives = 396/621 (63%), Gaps = 82/621 (13%)

Query: 549  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
            MNVHFPQDE+SRAEAYNIVNAN QY+ P++GDP+R LIQDHIVSAALLTK+DTFL ++E+
Sbjct: 1    MNVHFPQDEISRAEAYNIVNANEQYIVPTSGDPIRGLIQDHIVSAALLTKRDTFLTKEEY 60

Query: 609  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
              L+Y++ VSSS      G    ++ I   +   L L P IW+P+PLWTGKQVIT VLNH
Sbjct: 61   QHLVYNACVSSSAPVYQRGMSSPKIGIVEDDLVFLSLPPTIWRPKPLWTGKQVITTVLNH 120

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
            IT+GRP F                                ++K+ K+  D  G+      
Sbjct: 121  ITKGRPRFT-------------------------------MNKSGKVPGDYWGRNS---- 145

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAG 788
                                E  +LI  N+LV GV+DKAQF  YGLVH VQEL+G+N AG
Sbjct: 146  -------------------GELDVLIQNNELVCGVVDKAQFGKYGLVHVVQELFGANVAG 186

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
             LLS  SRLFT +LQMHGFTCG+ DLL++   E  R+  L  SE++G +VHL+ L   D 
Sbjct: 187  HLLSIFSRLFTGYLQMHGFTCGIADLLLIPQAEDGREKILEKSEKLGDKVHLQFLG-GDQ 245

Query: 849  AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNW 908
               D + L  +IEK +R  GDAA A  D  M+S LN+ TS  V N +  +GLLK    N 
Sbjct: 246  DRTDLLNLGEDIEKVLRNKGDAASARLDRLMSSALNRITSD-VNNSIFPKGLLKSFPSNC 304

Query: 909  ISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIID 968
            +SLMTTSGAKG  VNF QISS LGQQELEGKRVPRM+SGKTLP F PWD   RAGGFI D
Sbjct: 305  LSLMTTSGAKGGLVNFTQISSLLGQQELEGKRVPRMISGKTLPCFPPWDTRARAGGFISD 364

Query: 969  RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGS 1028
            RFLTGLRPQEYYFHCMAGR+GLVDTAVKTSRSGYLQRCLIKNLECLK+ YDY+VRD+DGS
Sbjct: 365  RFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECLKVYYDYTVRDSDGS 424

Query: 1029 IVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKC 1088
            I+QF YGEDGVDV +TS +++FD LA  +      +      G H F    ++       
Sbjct: 425  IIQFHYGEDGVDVMKTSCLTQFDILATNQ------KLVIQRLGKHQF----DELNCKSSS 474

Query: 1089 SGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQ-----------DFLKLVKHKFVL 1137
              +   S  Y  +LP+AL+  A+ F      N ++KQ           +FL L++ K+V 
Sbjct: 475  KERSSISENYTSDLPEALRFKAQDFI-----NNLSKQKRQILELEDPSNFLNLMRLKYVT 529

Query: 1138 SLAQPGEPVGLLASQSVGEPS 1158
            SLAQPGEPVG++A QS+GEPS
Sbjct: 530  SLAQPGEPVGVIAGQSIGEPS 550


>gi|214028094|gb|ACJ63316.1| RNA polymerase I large subunit [Nymphaea odorata]
          Length = 542

 Score =  583 bits (1503), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 313/620 (50%), Positives = 390/620 (62%), Gaps = 90/620 (14%)

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            VHFPQDE++RAEAYNIVNAN QY+ P+ G+P+R LIQDHI S+ LLTKKDTFL R+E+  
Sbjct: 1    VHFPQDEIARAEAYNIVNANEQYIVPTKGEPIRGLIQDHIASSVLLTKKDTFLTREEYHH 60

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            LLYS+    +      G+  ++  + +SE ++ P+LPAIWKP PLWTGKQ+IT +LNH+ 
Sbjct: 61   LLYSACAMVN-----LGESSKKCCMIKSEGDIHPILPAIWKPYPLWTGKQIITTILNHVA 115

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
             G PPF VE              N  K  D     K    + N +H+             
Sbjct: 116  HGLPPFTVE--------------NVAKIHDYNIIPKSCQREANTLHR------------- 148

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTL 790
                                K LI KN+ + GVIDKAQ+  YGLVH VQELYG NTAG L
Sbjct: 149  --------------------KCLICKNEFIYGVIDKAQYGKYGLVHMVQELYGENTAGLL 188

Query: 791  LSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAE 850
            LS LSRLFT F QMHGFTCGVDD L++ + E  R    +  E IG+ VH + + +E   +
Sbjct: 189  LSILSRLFTAFFQMHGFTCGVDDPLLVPEAEVLRTESTNRCESIGESVHSKFIGMEYD-Q 247

Query: 851  IDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS 910
            +DPI L+ EIE  +R  G++A    D  M+S+LN+ T+  +  +L   GL+KP   N + 
Sbjct: 248  LDPISLQREIENVLRTNGESATERLDALMSSELNELTNE-LNKKLFPVGLVKPFPNNCVF 306

Query: 911  LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRF 970
            LMT SGAKGS VNF QISS LGQQELEGKRVPRMVSGKTLP F PWD APRAGGFI DRF
Sbjct: 307  LMTASGAKGSNVNFIQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDTAPRAGGFISDRF 366

Query: 971  LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIV 1030
            LTGL PQEYYFHCMAGR+GLVDTA+KTSRSGYLQRCL+KNLECLK+ YDY+VRDADGSIV
Sbjct: 367  LTGLHPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLVKNLECLKVCYDYTVRDADGSIV 426

Query: 1031 QFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKK--- 1087
            QF YGEDGVDV ++S +++F  LAA                        NQE++ ++   
Sbjct: 427  QFYYGEDGVDVLKSSCLTEFKILAA------------------------NQEILLERLRN 462

Query: 1088 ---CSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAK------QDFLKLVKHKFVLS 1138
                   L  SN YI  LP+ L+  AE F  +   ++  +      + F+ LVK K+  S
Sbjct: 463  GHSVDSDLLESNGYISSLPELLQRKAENFIRELSEDQKGELKLSKPKKFMNLVKLKYATS 522

Query: 1139 LAQPGEPVGLLASQSVGEPS 1158
            LA  GE VG++A+QS+GEPS
Sbjct: 523  LAHAGEAVGVIAAQSIGEPS 542


>gi|334313345|ref|XP_003339889.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Monodelphis domestica]
          Length = 1831

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 343/853 (40%), Positives = 476/853 (55%), Gaps = 116/853 (13%)

Query: 240  GPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS 298
            G L PS  ++ +  LW+NE F L    S ++  G   K   +IFFL +V+VPP ++R  +
Sbjct: 265  GYLTPSTAREHVLALWKNEGFFLNYLFSGLEDPGVKSKFNPNIFFLDLVVVPPSRYRPVN 324

Query: 299  KGGDSVMEHPQTVLLSKVLQANIY--------------------LANAYVNQPDNAKVIV 338
            + GD +  + QTV L  VL+  +                     L      Q   A V +
Sbjct: 325  RLGDQMFTNGQTVNLQAVLKDVVLIRKLLALMAQEQVLPGPVASLTVLMFPQELEASVPM 384

Query: 339  AR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQ 380
             R                  W+ LQ  VN++FD        +   GI Q+LEKKEGLFR+
Sbjct: 385  DRSFLAMLPGQSLTEKLYGIWIRLQSHVNIVFDSDMDKLMMEKYPGIRQILEKKEGLFRK 444

Query: 381  KLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEI 440
             +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING  +
Sbjct: 445  HMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNV 504

Query: 441  HPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQ 498
            HPGA+  +  D   T     +   R ++ ++L T       P          K+V RH++
Sbjct: 505  HPGASMVINEDGSRTALSATDVTQREAVAKQLLT-------PATGGPKPQGAKVVCRHVK 557

Query: 499  DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
            +GDV+L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ E+
Sbjct: 558  NGDVLLLNRQPTLHRPSIQAHRARILPAEKVLRLHYANCKAYNADFDGDEMNAHFPQSEL 617

Query: 559  SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
             RAEA  +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y     
Sbjct: 618  GRAEASVLACTDEQYLVPKDGQPLAGLIQDHMVSGARMTTRGCFFTREQYMELVY----- 672

Query: 619  SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVV 678
              GL    G+            ++ P  PAI KP PLWTGKQV++ +L +I         
Sbjct: 673  -RGLTDRVGR-----------VKIFP--PAILKPCPLWTGKQVVSTLLINI--------- 709

Query: 679  ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 738
                 +P+                          N +  +  GK K  + GK   ++ A 
Sbjct: 710  -----IPE--------------------------NHIPLNLIGKAK--ISGKAWIKQNAR 736

Query: 739  KNKSKEKE-LSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALS 795
               S + + L E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L+
Sbjct: 737  ATPSCDLDALCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEVYGGETSGRVLTCLA 796

Query: 796  RLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
            RLFT +LQ++ GFT GV+D+L+    + +RK+ +  S   G R    A  L D     P 
Sbjct: 797  RLFTAYLQLYQGFTLGVEDILVRPQADAKRKSVVEESSRCGFRAIKAAFGLPDAT--TPE 854

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
              ++  + A            D+K   ++N H S+ +    +  GL +   +N + +M  
Sbjct: 855  DAQTRWQDAHLSKDQRDFNMVDLKFKEEVN-HYSNEINKACMPFGLHRGFPENNLQMMVQ 913

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P++  PR+GGF+  RFLTG+
Sbjct: 914  SGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFEPYEVTPRSGGFVTGRFLTGI 973

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
            RP E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF Y
Sbjct: 974  RPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLY 1033

Query: 1035 GEDGVDVHQTSFI 1047
            GEDG+D+ +T F+
Sbjct: 1034 GEDGLDIPKTQFL 1046



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/80 (68%), Positives = 67/80 (83%), Gaps = 1/80 (1%)

Query: 1126 DFLKLVKH-KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
            D LK + H K+  +L  PGE VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+
Sbjct: 1204 DRLKTLLHLKWQRALCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR 1263

Query: 1185 EILTIASKDIKTPVITCPLL 1204
            EIL +AS +IKTP+++ P+L
Sbjct: 1264 EILMVASSNIKTPMMSVPVL 1283



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 4/155 (2%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q    CPGH GHI+L + VYNPL F+ LY L++  C  CH     R  V     +
Sbjct: 64  CSTCVQDFGSCPGHLGHIELPLIVYNPLFFDKLYLLIRGSCLNCHLLTCPRPVVHLLYCQ 123

Query: 61  LELIIKGDIIAAKSLDLDLPS-ESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTS 119
           L ++  G +     L+  L   +  NP+ S    +      T     +N+   +  +  +
Sbjct: 124 LRVLEVGALQGVYELETTLNRFQEENPDASIYEIQGELEQHTRAILENNLLGAQGSQVKN 183

Query: 120 LQFAEAKLALLQFLK--IETTKCGNCKAKNPRISK 152
           +  +++KL + QF K  + + +C +CK     + K
Sbjct: 184 VCESKSKL-IAQFWKTHMASKRCPHCKTGKSVVRK 217


>gi|45181587|gb|AAS55444.1| RNA polymerase I largest subunit [Zamia muricata]
          Length = 551

 Score =  581 bits (1497), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 316/618 (51%), Positives = 398/618 (64%), Gaps = 75/618 (12%)

Query: 549  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
            MNVHFPQDE+SRAEAYNIVNAN QY+ P++GDP+R LIQDH+VSA LLTK+DTFL +D++
Sbjct: 1    MNVHFPQDEISRAEAYNIVNANEQYIVPTSGDPIRGLIQDHVVSATLLTKRDTFLTKDDY 60

Query: 609  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
              L+YS+ VS++       K   ++ I + +   L L PAIWKP+PLWTGKQVIT VLN+
Sbjct: 61   QHLVYSACVSTTPPVFQRAKSCPKIGIVKDDYSFLSLPPAIWKPQPLWTGKQVITTVLNY 120

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
            +T+G PPF +++ G                               K+  D  GK      
Sbjct: 121  VTKGHPPFTMKKAG-------------------------------KVPGDYWGKSS---- 145

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAG 788
                                E K +I  N+L+ GVIDKAQF  YGLVHTVQELYG+ TAG
Sbjct: 146  -------------------GELKAVIQNNELICGVIDKAQFGKYGLVHTVQELYGAGTAG 186

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
             LLS  SRLFT +LQMHGFTCGV DLL++   E +R+  L  SE +G  VH + +   DG
Sbjct: 187  HLLSVFSRLFTGYLQMHGFTCGVADLLLVPQAEDDREKKLEKSETLGDSVHSQFIG-ADG 245

Query: 849  AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNW 908
             + +   ++ +IEK +R  G+ A +  D  M+S LN+ TS  V N L  +GLLKP   N 
Sbjct: 246  DQREFEGMEEDIEKHLRSKGEVASSRLDRLMSSALNRLTSD-VNNGLFPKGLLKPFPSNC 304

Query: 909  ISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIID 968
            +SLMT +GAKG  VNF QISS LGQQELEGKRVPRMVSGKTLP F PWD   RAGGFI D
Sbjct: 305  LSLMTMTGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDSRARAGGFIGD 364

Query: 969  RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGS 1028
            RFLTGLRPQEYYFHCMAGR+GLVDTA+KTSRSGYLQRCLIKNLECLK+ YDY+VRD+DGS
Sbjct: 365  RFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLIKNLECLKVHYDYTVRDSDGS 424

Query: 1029 IVQFCYGEDGVDVHQTSFISKFDALAARER--GRGRGRNKFCDKGSHTFVMGRNQEMIYK 1086
            ++QF YGEDG+DV +TS +++F  LAA      +  G +KF +               Y 
Sbjct: 425  VIQFTYGEDGLDVMKTSCLTEFKVLAANRELVSQKLGESKFMETNCQ-----------YS 473

Query: 1087 KCSGQLDASNAYIMELPDALKDNAEKFAD-----KFLSNEMAKQD-FLKLVKHKFVLSLA 1140
              S +    N Y+ ELP+A ++  + F +     K  S ++ KQ  FL L++ K++ SLA
Sbjct: 474  NYSNKERPLNGYMEELPEAFENKLQTFFNGLSKQKRKSLKLRKQSRFLNLMRLKYISSLA 533

Query: 1141 QPGEPVGLLASQSVGEPS 1158
            QPGE VG++A QS+GEPS
Sbjct: 534  QPGESVGVIAGQSIGEPS 551


>gi|380020146|ref|XP_003693956.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Apis florea]
          Length = 1706

 Score =  580 bits (1496), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 349/839 (41%), Positives = 490/839 (58%), Gaps = 103/839 (12%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGK---KAGHSIFFLGVVLVPPIKFRLPS 298
            ++P   KD + KLW+NE      I       FG    +    IFF  V+ V P   R  +
Sbjct: 266  IMPDQSKDYLRKLWQNEKNFLKIIIPC----FGMVDIEYPTDIFFFEVIPVLPPIVRPVN 321

Query: 299  KGGDSVMEHPQTVLLSKVLQANIYLANAYVN--------QPDNAKVIVAR---------- 340
                 ++EHPQ+ +   ++Q  + L N             P+  KV+             
Sbjct: 322  FINGQMIEHPQSQVYKSIIQDCLVLRNIIQTIQDGDTEQLPEEGKVVYDHIKGNTAIEKL 381

Query: 341  ---WMNLQQSVNVLFD-GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
               W NLQ +V+ L D   N         G+ Q++EKKEG+ R  +MGKRVN+A RSVI+
Sbjct: 382  HNAWQNLQVNVDHLMDRDMNRTADSANCQGLKQVIEKKEGIIRMHMMGKRVNFAARSVIT 441

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL-STMR 455
            PDP L ++EIGIP  FAL+LTYP  VTPWNVV+LR  ++NG  IHPGA    ++  S  R
Sbjct: 442  PDPNLNIDEIGIPEAFALKLTYPTPVTPWNVVQLRQLVLNGPNIHPGAVMIENEDGSIQR 501

Query: 456  LPPNKKM-RISIGRKLDTSRGAIVQPGKDSDNEFEG-KMVYRHLQDGDVVLVNRQPTLHK 513
            +  +  + R +I ++L T+          ++  F+G K+V+RHLQ+GD++L+NRQPTLHK
Sbjct: 502  ISTSDAIQREAIAKRLLTT-------SDKANKFFKGIKIVHRHLQNGDILLLNRQPTLHK 554

Query: 514  PSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQY 573
            PSIMAH  R+LKGEKTLR+HYANC +YNADFDGDE+N H PQ+E++R+E YNI N +NQY
Sbjct: 555  PSIMAHKARILKGEKTLRLHYANCKSYNADFDGDEINAHHPQNELARSEGYNIANVSNQY 614

Query: 574  VRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRV 633
            + P +G PL  LIQDHI+S   LT + TF +R+++ QL+Y++                  
Sbjct: 615  LVPKDGTPLSGLIQDHIISGVRLTVRGTFFSREDYMQLVYAA------------------ 656

Query: 634  LISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRF 693
             +S  +  ++ L P+I KP  LW+GKQ+I+ V+       PP              + R 
Sbjct: 657  -LSTIQDNIILLPPSIIKPIALWSGKQIISTVI---INIIPP-------------NQARI 699

Query: 694  NADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLL 753
            N              L+ + K++  K  + ++    K G E       S    +SE +++
Sbjct: 700  N--------------LTASAKINV-KQWQIEKTRHWKCGTE------FSNPNTMSEAEVI 738

Query: 754  IYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
            I   +L+ GV+DK  +    +GLVH + ELYG   +  LLSA  +LF   LQ +GFT G+
Sbjct: 739  IRNGELLCGVLDKTHYGATPFGLVHCIFELYGGTCSAKLLSAFGKLFQAALQRNGFTLGI 798

Query: 812  DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAA 871
            +D+L+LK  +++RK  +    +IG+ +    LEL +   +D +   S++E++        
Sbjct: 799  EDILLLKKADKKRKEIISNCRKIGENIQKSVLELPNDTPMDIV--TSKMEESYWNDPKFR 856

Query: 872  VAYFDMKMTSQLNKHTSSSVINEL-LSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
                D K  S L+ +T+   IN++ L  GLLK    N + LM  SGAKGS VN  QIS  
Sbjct: 857  TQ-VDRKYKSALDIYTND--INKICLPAGLLKKFPDNNLQLMVQSGAKGSTVNTMQISCL 913

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            LGQ ELEGKR P M+SGK+LPSF  +D  PRAGGFI  RF+TG++PQE++FHCMAGREGL
Sbjct: 914  LGQIELEGKRPPLMISGKSLPSFPAYDPTPRAGGFIDGRFMTGIKPQEFFFHCMAGREGL 973

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISK 1049
            +DTAVKTSRSGYLQRCLIK+LE L I+YD +VRD+DGS+VQ  YGEDG+D+  + F+ K
Sbjct: 974  IDTAVKTSRSGYLQRCLIKHLEGLVINYDSTVRDSDGSLVQIYYGEDGLDIPGSRFLKK 1032



 Score =  120 bits (300), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/155 (43%), Positives = 94/155 (60%), Gaps = 9/155 (5%)

Query: 1056 RERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPD--ALKDNAEKF 1113
            ++ GR +    +  K   T     +++ IY +C    D   +   +  D   L +  E  
Sbjct: 1109 KQSGRSKAAVSYMRKWIRT--TEEDKKWIYNECIKCPDPVMSKYRQDIDFGVLSERLENL 1166

Query: 1114 ADKFLSNE-----MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHL 1168
             D++L+N+     + K+D   L+  K +  +  PGEPVGLLA+QS+GEPSTQMTLNTFH 
Sbjct: 1167 IDEYLTNKSKNFIIRKKDLRDLLSMKVMKVVCPPGEPVGLLAAQSIGEPSTQMTLNTFHF 1226

Query: 1169 AGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            AGRGEMNVTLGIPRL+EIL +ASK+IKTP +  P 
Sbjct: 1227 AGRGEMNVTLGIPRLREILMMASKNIKTPSMEIPF 1261



 Score = 57.0 bits (136), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 29/48 (60%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFK 48
           C TCG   F CPGHFGHI+L +PV NPL    L  L+K  C  C + +
Sbjct: 71  CGTCGCNVFKCPGHFGHIELPMPVINPLFHKGLCMLIKLACLNCFNLQ 118


>gi|45181585|gb|AAS55443.1| RNA polymerase I largest subunit [Cycas revoluta]
          Length = 547

 Score =  580 bits (1495), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 314/618 (50%), Positives = 399/618 (64%), Gaps = 79/618 (12%)

Query: 549  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
            MNVHFPQDE+SRAEAYNIVNAN QY+ P++GDP+R LIQDH+ SA LLTK+DTFL +D++
Sbjct: 1    MNVHFPQDEISRAEAYNIVNANEQYIVPTSGDPIRGLIQDHVASATLLTKRDTFLTKDDY 60

Query: 609  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
              L+YS+ VS++      GK   ++ I + +   L L PAIWKP+PLWTGKQVITA+LN+
Sbjct: 61   QHLVYSACVSTTAPVFQRGKSCPKIGIVKDDHTFLSLPPAIWKPQPLWTGKQVITALLNY 120

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
            +TRG PPF ++                               K  ++  D  GK      
Sbjct: 121  VTRGSPPFTMK-------------------------------KAGRVPGDYWGKSS---- 145

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAG 788
                                E K++I  N+L+ GV+DKAQF  YGLVH VQELYG++ AG
Sbjct: 146  -------------------GELKVIIQNNELICGVLDKAQFGKYGLVHIVQELYGADAAG 186

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
             LLS  SRLFT +LQMHGFTCGV DLL++   E  R+  L  +E +G  VH + + + DG
Sbjct: 187  HLLSVFSRLFTGYLQMHGFTCGVADLLLVPQAEDYREKKLGKAEMLGDTVHSQFIGV-DG 245

Query: 849  AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNW 908
              ID  +++ +IEK +RG G+ A    D  M+S LN+ TS  V N L  +GLLKP   N 
Sbjct: 246  DCIDLEQMEGDIEKHLRGKGEVASNRLDRLMSSALNRVTSE-VNNVLFPKGLLKPFPSNC 304

Query: 909  ISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIID 968
            +SLMT +GAKG  VNF QISS LGQQELEGKRVPRMVSGKTLP F PWD   RAGGFI D
Sbjct: 305  LSLMTVTGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDSRARAGGFISD 364

Query: 969  RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGS 1028
            RFLTGLRPQEYYFHCMAGR+GLVDTA+KTSRSGYLQRCLIKNLECLK+ YDY+VRD+DGS
Sbjct: 365  RFLTGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLIKNLECLKVHYDYTVRDSDGS 424

Query: 1029 IVQFCYGEDGVDVHQTSFISKFDALAARER--GRGRGRNKFCDKGSHTFVMGRNQEMIYK 1086
            ++QF YGEDG+DV +TS +++F  LAA ++   R  G   F +          N +   K
Sbjct: 425  VIQFTYGEDGLDVMKTSCLTEFKVLAANQKLVSRRLGGGNFTE---------LNCQYSDK 475

Query: 1087 KCSGQLDASNAYIMELPDALKDNAEKFAD------KFLSNEMAKQDFLKLVKHKFVLSLA 1140
            K      +S++YI  LP+A ++  + F +      K       +  FL L++ K++ SLA
Sbjct: 476  K------SSDSYIKSLPEAFENKLQTFINGLSKKKKRSLKLRKQNKFLNLMRLKYISSLA 529

Query: 1141 QPGEPVGLLASQSVGEPS 1158
            QPGEPVG++A QS+GEPS
Sbjct: 530  QPGEPVGVIAGQSIGEPS 547


>gi|390354095|ref|XP_794863.3| PREDICTED: DNA-directed RNA polymerase I subunit RPA1
            [Strongylocentrotus purpuratus]
          Length = 1738

 Score =  580 bits (1495), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 357/815 (43%), Positives = 469/815 (57%), Gaps = 112/815 (13%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQAN--IYLANAYVNQPD------- 332
            FFL  + V P KFR  S  G+   E+PQT  LSKVL+    ++L    + Q         
Sbjct: 284  FFLEALPVIPSKFRPISTAGEKTFENPQTGNLSKVLKDCHVLHLLLRVMRQSTSQQGSQD 343

Query: 333  --------NAKVIVARWMNLQQSVNVLFDGK-------NAAGQ----------------- 360
                    + K+ V    N+ QS+     GK       NA  Q                 
Sbjct: 344  VENGVMEIDVKLTVKDKENVDQSILSTIPGKTLPEKLQNALTQLQTHVNCVIDSDLDKIS 403

Query: 361  RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE 420
             D A GI QLLE+KEGLFR+ +MGKRVNYA RSVISPDPY+  +EIGIP   A RLTYP+
Sbjct: 404  TDKAPGIKQLLERKEGLFRKHMMGKRVNYAARSVISPDPYINTDEIGIPQVIAKRLTYPQ 463

Query: 421  RVTPWNVVKLRDSIINGAEIHPGATHYLDKL-STMRL-PPNKKMRISIGRKLDTSRGAIV 478
             VT WN  +LR  ++NG ++HPGA    ++  S +RL   N+  R S+ ++L T      
Sbjct: 464  PVTDWNAQELRQMVMNGPDVHPGALLIENEDGSQVRLRADNQSQRESVAKRLLT------ 517

Query: 479  QPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS 538
             P   +      K V+RHLQ GD+VL+NRQPTLHKP IMAH VRVL GEKTLR+HY+ C 
Sbjct: 518  -PSNINKQNTGSKKVHRHLQTGDIVLLNRQPTLHKPGIMAHKVRVLPGEKTLRLHYSACK 576

Query: 539  TYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTK 598
            TYNADFDGDEMNVHFPQ+E+ RAEA  I + N+QY+ P +G PL  LIQDHI+S   +T 
Sbjct: 577  TYNADFDGDEMNVHFPQNELGRAEALTIASTNHQYLVPKDGTPLGGLIQDHIISGVRMTV 636

Query: 599  KDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTG 658
            +  F  R E+ QL+Y S                   ++  E  V  L P I KP  LW+G
Sbjct: 637  RGRFFTRLEYQQLVYCS-------------------LTDKEGPVKCLPPCIRKPALLWSG 677

Query: 659  KQVI-TAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHK 717
            KQ+I T ++N I  G  P           DF                  GK SK N    
Sbjct: 678  KQLISTIIINTIPEGCKPL----------DFI-----------------GK-SKIN---- 705

Query: 718  DKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFA--DYGLV 775
            +KS  K E    K G             ++ E +++I + +L+ GV+DK  +    YGLV
Sbjct: 706  NKSWCKAEPRPPKAG------GGALVGTDMCESEVIIREGELLSGVLDKGNYGPTPYGLV 759

Query: 776  HTVQELYGSNTAGTLLSALSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEI 834
            H + ELYG + AG LLS   RLFT FLQ H GFT G +D+++L   + +R + L  S++ 
Sbjct: 760  HCIYELYGGHIAGKLLSHFGRLFTTFLQQHTGFTLGPEDIIVLDKADEKRLDILEESKDC 819

Query: 835  GKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINE 894
            G     +AL +E+        L    E A R    + +   D++M ++ + + S+ V + 
Sbjct: 820  GSEAVAQALGVEEFTGFHASTLTKRYEIAHRKPDGSDMKEIDLQMKTKTDLY-SNQVSST 878

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
             L  GLLK   +N + L+  SGAKGS VN  QIS  LGQ ELEG+R P MVSG++LPSF 
Sbjct: 879  CLGSGLLKQFPENNLQLVVLSGAKGSMVNCLQISCLLGQIELEGRRPPLMVSGRSLPSFP 938

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
            P++ +PR+GG++  RFLTG++PQEY+FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L
Sbjct: 939  PYETSPRSGGYVAGRFLTGIKPQEYFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGL 998

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISK 1049
             ++YD +VRD+DGSIVQF YGEDG+D+ +T F+ K
Sbjct: 999  VVNYDQTVRDSDGSIVQFQYGEDGLDILRTPFLHK 1033



 Score =  110 bits (274), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 62/75 (82%)

Query: 1130 LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTI 1189
            ++  K+  +L  PGE VGLLA+QS+GEPSTQMTLNTFH AGRG+MNVTLGIPRL+EIL +
Sbjct: 1196 MMYSKYQRALCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMV 1255

Query: 1190 ASKDIKTPVITCPLL 1204
            AS +IKTP +T P L
Sbjct: 1256 ASANIKTPSMTIPFL 1270



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 38/67 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC   QF CPGH GH+ L +PV+NPL F L+  LL   C  C+H  A R  +   V++
Sbjct: 63  CGTCSLGQFHCPGHMGHVTLPLPVFNPLFFPLVRQLLHGSCLECNHLLAPRWTLRLVVQQ 122

Query: 61  LELIIKG 67
           L  +  G
Sbjct: 123 LRCLDHG 129


>gi|328784193|ref|XP_001121092.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Apis
            mellifera]
          Length = 1708

 Score =  579 bits (1493), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 344/839 (41%), Positives = 482/839 (57%), Gaps = 103/839 (12%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGK---KAGHSIFFLGVVLVPPIKFRLPS 298
            ++P   KD + KLW+NE      I       FG    +    IFF  V+ V P   R  +
Sbjct: 266  IMPDQSKDYLRKLWQNEKNFLKVIIPC----FGMVDIEYPTDIFFFEVIPVLPPIVRPVN 321

Query: 299  KGGDSVMEHPQTVLLSKVLQANIYLANAYVN--------QPDNAKVIVAR---------- 340
                 ++EHPQ+ +   ++Q  + L N             P+  KV+             
Sbjct: 322  FINGQMIEHPQSQVYKSIIQDCLVLRNIIQTIQDGDTEQLPEEGKVVYDHIKGNTAIEKL 381

Query: 341  ---WMNLQQSVNVLFD-GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
               W NLQ +V+ L D   N         G+ Q++EKKEG+ R  +MGKRVN+A RSVI+
Sbjct: 382  HNAWQNLQVNVDHLMDRDMNRTTDSANCQGLKQVIEKKEGIIRMHMMGKRVNFAARSVIT 441

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PDP L ++EIGIP  FAL+LTYP  VTPWNVV+LR  ++NG  IHPGA    ++  +++ 
Sbjct: 442  PDPNLNIDEIGIPEAFALKLTYPTPVTPWNVVQLRQLVLNGPNIHPGAVMIENEDGSIQ- 500

Query: 457  PPNKKMRISIGRKLDTSRGA--IVQPGKDSDNEFEG-KMVYRHLQDGDVVLVNRQPTLHK 513
                  RISI   +     A  ++     ++  F+G K+V+RHLQ+GD++L+NRQPTLHK
Sbjct: 501  ------RISISDAIQREAIAKRLLTTSDKANKFFKGIKIVHRHLQNGDILLLNRQPTLHK 554

Query: 514  PSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQY 573
            PSIMAH  R+LKGEKTLR+HYANC +YNADFDGDE+N H PQ+E++R+E YNI N +NQY
Sbjct: 555  PSIMAHKARILKGEKTLRLHYANCKSYNADFDGDEINAHHPQNELARSEGYNIANVSNQY 614

Query: 574  VRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRV 633
            + P +G PL  LIQDHI+S   LT + TF +R+++ QL+Y++                  
Sbjct: 615  LVPKDGTPLSGLIQDHIISGVRLTVRGTFFSREDYMQLVYAA------------------ 656

Query: 634  LISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRF 693
             +S  +  ++ L P+I KP  LW+GKQ+I+                    +P +  +   
Sbjct: 657  -LSTIQDNIILLPPSIIKPIALWSGKQIIST--------------VIINIIPPNQARINL 701

Query: 694  NADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLL 753
             A+ + + K   + ++ KT                 K G E       S    +SE +++
Sbjct: 702  TANAKINVK---QWQIEKTR--------------HWKCGTE------FSNPNTMSEAEVI 738

Query: 754  IYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
            I   +L+ GV+DK  +    +GLVH + ELYG   +  LLSA  +LF   LQ +GFT G+
Sbjct: 739  IRNGELLCGVLDKTHYGATPFGLVHCIFELYGGTCSSKLLSAFGKLFQAALQRNGFTLGI 798

Query: 812  DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAA 871
            +D+L+LK  +++RK  +    +IG+ +    LEL +   ++ +  K E            
Sbjct: 799  EDILLLKKADKKRKEIISNCRKIGENIQKSVLELPNDTPMNIVTSKME---ESYWNDPKF 855

Query: 872  VAYFDMKMTSQLNKHTSSSVINEL-LSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
             A  D K  + L+ +T+   IN++ L  GLLK    N + LM  SGAKGS VN  QIS  
Sbjct: 856  RAQVDRKYKTALDIYTND--INKICLPAGLLKKFPDNNLQLMVQSGAKGSTVNTMQISCL 913

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            LGQ ELEGKR P M+SGK+LPSF  +D  PRAGGFI  RF+TG++PQE++FHCMAGREGL
Sbjct: 914  LGQIELEGKRPPLMISGKSLPSFPAYDPTPRAGGFIDGRFMTGIKPQEFFFHCMAGREGL 973

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISK 1049
            +DTAVKTSRSGYLQRCLIK+LE L I+YD +VRD+DGS+VQ  YGEDG+D+  + F+ K
Sbjct: 974  IDTAVKTSRSGYLQRCLIKHLEGLVINYDSTVRDSDGSLVQIYYGEDGLDIPGSRFLKK 1032



 Score =  121 bits (303), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/155 (44%), Positives = 94/155 (60%), Gaps = 9/155 (5%)

Query: 1056 RERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPD--ALKDNAEKF 1113
            ++ GR +    +  K   T     +++ IY KC    D   +   +  D   L +  E  
Sbjct: 1109 KQSGRSKAAVSYMRKWIRT--TEEDKKWIYNKCIRCPDPVMSKYRQDIDFGVLSERLENL 1166

Query: 1114 ADKFLSNE-----MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHL 1168
             D++L+N+     + K+D   L+  K +  +  PGEPVGLLA+QS+GEPSTQMTLNTFH 
Sbjct: 1167 IDEYLTNKSKNFIIRKKDLRDLLSMKVMKVVCPPGEPVGLLAAQSIGEPSTQMTLNTFHF 1226

Query: 1169 AGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            AGRGEMNVTLGIPRL+EIL +ASK+IKTP +  P 
Sbjct: 1227 AGRGEMNVTLGIPRLREILMMASKNIKTPSMEIPF 1261



 Score = 57.0 bits (136), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 29/48 (60%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFK 48
           C TCG   F CPGHFGHI+L +PV NPL    L  L+K  C  C + +
Sbjct: 71  CGTCGCNVFKCPGHFGHIELPMPVINPLFHKGLCMLIKLACLNCFNLQ 118


>gi|45181589|gb|AAS55445.1| RNA polymerase I largest subunit [Ginkgo biloba]
          Length = 542

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 314/618 (50%), Positives = 399/618 (64%), Gaps = 84/618 (13%)

Query: 549  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
            MNVHFPQDE++RAEAYNIVNAN QY+ P++GDP+R LIQDHIVSAALLTKKDTFL ++++
Sbjct: 1    MNVHFPQDEIARAEAYNIVNANEQYIVPTSGDPIRGLIQDHIVSAALLTKKDTFLTKEDY 60

Query: 609  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
              L+Y++ VS++      GK   +V I + +   L L PAI KPEPLWTGKQVIT VL++
Sbjct: 61   QHLVYTACVSTTAPVFQRGKSFPKVGIVKDDHTFLSLPPAILKPEPLWTGKQVITTVLHY 120

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
            +T+G  PF ++R G                               K+  D  GK      
Sbjct: 121  VTKGSVPFTMKRAG-------------------------------KVPGDYWGKNS---- 145

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAG 788
                                E K+ I  N+L+ GVIDKAQF  +GLVH VQELYG++ AG
Sbjct: 146  -------------------GELKVRIQNNELICGVIDKAQFGKHGLVHIVQELYGADVAG 186

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
             LLS  SRLFT +LQMHGFTCGV DLL++   E +R+  L  SEE+G  VH + +   +G
Sbjct: 187  HLLSVFSRLFTGYLQMHGFTCGVADLLLVPQAEDDRQKKLEKSEELGDNVHFQFIG-ANG 245

Query: 849  AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNW 908
             +ID   ++ E EK +R  GDAA A  D  M+S LN+ TS  V N L  +GLLKP   N 
Sbjct: 246  DQIDLESMEEETEKHLRSKGDAASARLDRLMSSALNRVTSE-VNNALFPKGLLKPFPSNC 304

Query: 909  ISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIID 968
            +SLMT +GAKG  VNF QISS LGQQELEGKRVPRM+SGKTLP F PWD   RAGGFI D
Sbjct: 305  LSLMTMTGAKGGLVNFTQISSLLGQQELEGKRVPRMISGKTLPCFLPWDSRARAGGFISD 364

Query: 969  RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGS 1028
            RFLTGLRPQEYYF CMA R+GLVDTA+KTSRSGYLQRCLIKNLECLK+ YDY+VRD+DGS
Sbjct: 365  RFLTGLRPQEYYFQCMAARDGLVDTAIKTSRSGYLQRCLIKNLECLKVYYDYTVRDSDGS 424

Query: 1029 IVQFCYGEDGVDVHQTSFISKFDALAARER--GRGRGRNKFCDKGSHTFVMGRNQEMIYK 1086
            ++QF YGEDG+DV +TS +++F  LAA  +   +  G+++F   GS +            
Sbjct: 425  VIQFNYGEDGLDVMKTSCLTQFKVLAANNKLVSQKLGKDQF--DGSKSL----------- 471

Query: 1087 KCSGQLDASNAYIMELPDALKDNAEKFADKFLS------NEMAKQDFLKLVKHKFVLSLA 1140
                   +S++YI +LP+AL++  + F +          N   +  FL L++ K++ SLA
Sbjct: 472  -------SSDSYIKDLPEALENKVQDFINGLSKQKRQSLNLKKRTGFLNLMRLKYMSSLA 524

Query: 1141 QPGEPVGLLASQSVGEPS 1158
            QPGEPVG++A QS+GEPS
Sbjct: 525  QPGEPVGVIAGQSIGEPS 542


>gi|148238249|ref|NP_001082182.1| polymerase (RNA) I polypeptide A, 194kDa [Xenopus laevis]
 gi|18032797|gb|AAL56846.1|AF309686_1 RNA polymerase I large subunit [Xenopus laevis]
          Length = 1730

 Score =  577 bits (1488), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 342/852 (40%), Positives = 487/852 (57%), Gaps = 118/852 (13%)

Query: 240  GPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKA-GHSIFFLGVVLVPPIKFRLP 297
            G L P+  K++I +LW+NE F L    S +   G G+ A     FFL +++VPP +FR  
Sbjct: 260  GYLTPNTTKELIMELWKNEGFFLQHLFSGIT--GGGESAFTPDTFFLDIIVVPPSRFRPV 317

Query: 298  SKGGDSVMEHPQTVLLSKVL------------------------QANIYLANAYVNQPDN 333
            ++ GD +  +  T+ L  VL                        ++ + L  A V +  +
Sbjct: 318  NRLGDQMFTNGHTINLQSVLKDISTIQKLLAVMAQDQEQTPELTESGMNLKEAEVTENID 377

Query: 334  AKVIVA------------RWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQK 381
               +               W+ LQ  VN++FD        D   GI Q+LEKK+GLFR+ 
Sbjct: 378  RSFLATLTGLSLTDKLYNSWVRLQSHVNIVFDSDMDKLMSDKYPGIRQVLEKKDGLFRKH 437

Query: 382  LMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIH 441
            +MGKRV++A RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR +++NG  +H
Sbjct: 438  MMGKRVDFAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRKAVLNGPNVH 497

Query: 442  PGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQD 499
            PGA+  +  D   T+    +   R ++ ++L T       P   +      K+V RH+++
Sbjct: 498  PGASMVINEDGSRTILNSTDLSQRDAVAKQLLT-------PSTGTQT-LNAKIVCRHVKN 549

Query: 500  GDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVS 559
            GDV+L+NRQPTLH+PSI AH  R+L GEK LR+HYANC  YNADFDGDEMN HFPQ E+ 
Sbjct: 550  GDVLLLNRQPTLHRPSIQAHKARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELG 609

Query: 560  RAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSS 619
            RAEAY I   + QY+ P +G PL  LIQDH+VS A +T +  +  R+++ +L+Y      
Sbjct: 610  RAEAYTIACTDEQYLVPKDGTPLAGLIQDHMVSGANMTIRGCYFTREQYMELVYQ----- 664

Query: 620  SGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVE 679
                  T K G RV       ++LP  PAI KP  LWTGKQV++ +L ++          
Sbjct: 665  ----GLTDKKG-RV-------KLLP--PAILKPHRLWTGKQVVSTLLINV---------- 700

Query: 680  RGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEK 739
                +P++                     L+ T K         KE     PG   ++  
Sbjct: 701  ----IPENLI------------------PLNLTGKAKIGGKAWVKEQPRPIPGFSPDS-- 736

Query: 740  NKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRL 797
                   + E +++I   +L+ GV+DKA +  + +GLVH   ELYG  T+G LL+ L+RL
Sbjct: 737  -------MCESQVIIRNGELLCGVLDKAHYGSSSFGLVHCCYELYGGETSGKLLTCLARL 789

Query: 798  FTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKL 856
            FT +L+++ GFT GV+D+L+L   + +R+N +  S + G R    A  L D A  +  + 
Sbjct: 790  FTAYLKLYRGFTLGVEDILVLPYADAKRQNIVEHSMQCGGRAIRAAFNLADAASDEEAQG 849

Query: 857  KSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL-LSEGLLKPTGKNWISLMTTS 915
            K +     +   D  +   D+K   ++N+  +   IN++ +  GL +   +N + LM  S
Sbjct: 850  KWQDAHLAKDQRDFNMV--DLKFKEEVNQFNNE--INKVCMPFGLHRSFPENNLQLMVQS 905

Query: 916  GAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLR 975
            GAKGS VN  QIS  LGQ ELEG+R P M SG++LP F P+D++PR+GGF+  RFLTG++
Sbjct: 906  GAKGSTVNTMQISCLLGQIELEGRRPPLMPSGRSLPCFQPYDFSPRSGGFVTGRFLTGIK 965

Query: 976  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYG 1035
            P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGSI+QF YG
Sbjct: 966  PPEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSIIQFLYG 1025

Query: 1036 EDGVDVHQTSFI 1047
            EDG+DV +T F+
Sbjct: 1026 EDGLDVPKTQFL 1037



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/83 (66%), Positives = 68/83 (81%), Gaps = 1/83 (1%)

Query: 1126 DFLKLVKH-KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
            D LK + H K+  +L  PG+ VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+
Sbjct: 1195 DSLKTLLHLKWQRALCDPGDAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR 1254

Query: 1185 EILTIASKDIKTPVITCPLLVGK 1207
            EIL +AS +IKTP+++ P+L  K
Sbjct: 1255 EILMVASSNIKTPMMSVPVLNTK 1277



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 32/51 (62%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASR 51
           C +C Q    CPGH GHI+L + VYNPL F+ LY L++  CF CH    +R
Sbjct: 64  CSSCFQDFTSCPGHLGHIELPLTVYNPLFFDKLYFLVRGSCFHCHLLTCNR 114


>gi|307179175|gb|EFN67613.1| DNA-directed RNA polymerase I subunit RPA1 [Camponotus floridanus]
          Length = 1686

 Score =  577 bits (1488), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 346/842 (41%), Positives = 487/842 (57%), Gaps = 109/842 (12%)

Query: 242  LLPSDVKDIIEKLWENE---FEL---CSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFR 295
            ++P+  K+ + +LW NE   F++   C  + D++           IFF  V+ V P   R
Sbjct: 263  IMPNQSKEYLRQLWNNEKDFFQIIIPCLELVDIEYPT-------DIFFFEVIPVLPPIVR 315

Query: 296  LPSKGGDSVMEHPQTVLLSKVLQANIYLAN--------AYVNQPDNAKVIVAR------- 340
              +     ++EHPQT +   ++Q  + L N        +  + P  ++++  +       
Sbjct: 316  PVNFINGQMIEHPQTYIYKNIIQDCLILRNIIQTIQDGSIDHLPQASRLVFEQIRGNTTV 375

Query: 341  ------WMNLQQSVNVLFDGK-NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRS 393
                  W  LQ +++ L D   N   +     G+ Q+LEKKEG+ R  +MGKRVN+A RS
Sbjct: 376  EKLHNAWQTLQSNIDHLMDRDINRTPESINGLGLKQILEKKEGIIRMHMMGKRVNFAARS 435

Query: 394  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLST 453
            VI+PDP L ++EIGIP  FA +LTYP  VTPWNVV+LR  ++NG ++HPGA    ++  +
Sbjct: 436  VITPDPDLNIDEIGIPEAFARKLTYPTTVTPWNVVELRRLVLNGPDVHPGAVIIENEDGS 495

Query: 454  MR-LPPNKKM-RISIGRKLDTSRGAIVQPGKDSDNE-FEG-KMVYRHLQDGDVVLVNRQP 509
            ++ +  N  M R +I ++L T+         D  NE F G K+V+RHLQ+GDV+L+NRQP
Sbjct: 496  VQAINSNDSMQREAIAKRLLTT--------NDKTNESFTGIKIVHRHLQNGDVLLLNRQP 547

Query: 510  TLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNA 569
            TLHKPSIMAH  RVLKGEKTL +HYANC  YNADFDGDEMN HFPQ+E++R+E YNI N 
Sbjct: 548  TLHKPSIMAHKARVLKGEKTLHLHYANCKAYNADFDGDEMNAHFPQNELARSEGYNIANV 607

Query: 570  NNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKP 629
             NQY+ P +G PL  LIQD+I++   LT +  F ++  + QL+Y++              
Sbjct: 608  CNQYLVPKDGTPLSGLIQDYIIAGVQLTTRGQFFSQTHYTQLVYTA-------------- 653

Query: 630  GQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFF 689
                 +S  + +V+ L P I KP+PLW+GKQV++ V+ +I              +P D  
Sbjct: 654  -----LSMVQGDVILLPPTIIKPKPLWSGKQVLSTVIINI--------------IPSD-- 692

Query: 690  KTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSE 749
            KTR N    S+ K N K    +T +  K     K  ++                   +SE
Sbjct: 693  KTRINL--ISNAKINVKEWQVETPRRWKCGVEFKNPII-------------------MSE 731

Query: 750  EKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             +++I   +L+ GV+DK  +    YGL+H + ELYG   A  +LSA ++LF  FL+ +GF
Sbjct: 732  AEVVIRHGELLCGVLDKMHYGATSYGLIHCIYELYGEMYASKILSAFAKLFQTFLRYNGF 791

Query: 808  TCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGG 867
            T GV+D+LI    +++RK  +    +IG+ V    +++ +   +D  K K E        
Sbjct: 792  TLGVEDILITHKIDKKRKELILDCRKIGEDVQKSIIKVSNEVSMDEFKDKVE---EFYWH 848

Query: 868  GDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQI 927
                 A  D K  S L+ +T+  +    L  GL K   KN + LM  SGAKGS VN  QI
Sbjct: 849  NSKFRAQVDHKYKSVLDVYTND-INRTCLQLGLFKKFPKNNLQLMVQSGAKGSMVNTMQI 907

Query: 928  SSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGR 987
            S  LGQ ELEGKR P M+SGK+L SF  +D  PRAGGFI  RF+TG++ QE +FHCMAGR
Sbjct: 908  SCLLGQSELEGKRPPLMISGKSLSSFSAYDPTPRAGGFIDSRFMTGIKSQECFFHCMAGR 967

Query: 988  EGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFI 1047
            EGLVDTAVKTSRSGYLQRCL+K+LE L I YD +VRD DGS++QF YGEDG+D+  + F+
Sbjct: 968  EGLVDTAVKTSRSGYLQRCLVKHLEGLVIGYDATVRDYDGSLIQFYYGEDGLDIPGSRFL 1027

Query: 1048 SK 1049
             K
Sbjct: 1028 RK 1029



 Score =  114 bits (284), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 1102 LPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQM 1161
            LP+ ++   +++   F S ++ K     L+  K + S+  PGEPVGLLA+QS+GEPSTQM
Sbjct: 1153 LPERIEGLIDEYV--FHSPKIKKSILRDLLSIKIMKSICPPGEPVGLLAAQSIGEPSTQM 1210

Query: 1162 TLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            TLNTFH +GRG+MNVTLGIPRL+EIL IASK+IKTP +  P 
Sbjct: 1211 TLNTFHFSGRGDMNVTLGIPRLREILMIASKNIKTPSMEIPF 1252



 Score = 73.2 bits (178), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 75/169 (44%), Gaps = 23/169 (13%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG   F CPGHFGHI+L VPV NPL    L TL K  C  C  F+           K
Sbjct: 68  CSTCGYNSFKCPGHFGHIELPVPVVNPLFHRELATLFKLSCLNCFTFQIPPDIKTLLAAK 127

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSC------------------SMVTP 102
           L+L+ +G +   + LD ++    SN +D +   +  C                  SM+  
Sbjct: 128 LKLLYQGQLADLEILDQEITYVKSNEKDKEKQTQYICDIIDTYMQNFFNRTRLSQSMIES 187

Query: 103 RGNYDNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRIS 151
             +  N++N+  Q W        K  L ++++ +  KC NC    P+IS
Sbjct: 188 HEHKSNMKNINTQ-W----HIYVKNVLKEYVRNKVGKCRNCNNVLPKIS 231


>gi|327275261|ref|XP_003222392.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Anolis
            carolinensis]
          Length = 1690

 Score =  577 bits (1487), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 340/847 (40%), Positives = 480/847 (56%), Gaps = 113/847 (13%)

Query: 240  GPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS 298
            G L P   K  +E LW+N+ F L    S M   G        +FFL  ++VPP ++R  S
Sbjct: 245  GYLTPLTAKHHVEALWKNDGFLLYKLFSGMTIAG-DSSFNPDMFFLDQLVVPPARYRPVS 303

Query: 299  KGGDSVMEHPQTVLLSKVLQ-------------------ANIYLANAYVNQPDN------ 333
              GD +  + QTV L  V++                    ++ +     ++P +      
Sbjct: 304  CVGDQMFANGQTVNLQAVMKDAQLTRKVLAIIAQEDSQMEDLKMVTEQASEPLDRSFLQT 363

Query: 334  ------AKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRV 387
                  A  +   W+ LQ  VN++FD        +   G+ Q LEKK+GLFR+ +MGKRV
Sbjct: 364  IPGQTVADKLYNIWIRLQSRVNIVFDSDMDKVITEKYPGVRQFLEKKDGLFRKHMMGKRV 423

Query: 388  NYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY 447
            +YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING   HPGA+  
Sbjct: 424  DYAARSVICPDMYIRTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNQHPGASMI 483

Query: 448  L--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLV 505
            +  D   T+    N+  R +I ++L T      +PG         K+V RH+++GDV+L+
Sbjct: 484  INEDGSRTILSAANETQREAIAKQLLTPSTGTPKPGI--------KIVCRHIKNGDVLLL 535

Query: 506  NRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYN 565
            NRQPTLH+PSI AH  R+L GEK LR+HYANC  YNADFDGDEMN HFPQ+E+ RAEAY 
Sbjct: 536  NRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQNELGRAEAYI 595

Query: 566  IVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSF 625
            +   + QY+ P +G PL  LIQDH+VS   +T +  F  R+++ +L+Y       GL   
Sbjct: 596  LACTDEQYLVPKDGTPLAGLIQDHMVSGTSMTTRGCFFTREQYAELVY------QGLTDK 649

Query: 626  TGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLP 685
             GK            ++LP  P+I KP+ LWTGKQV++ +L ++              +P
Sbjct: 650  KGK-----------VKLLP--PSILKPQRLWTGKQVVSTLLINV--------------IP 682

Query: 686  QDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN-KSKE 744
            +D                                SGK K  +  K   ++ + +N ++  
Sbjct: 683  EDHIPLNL--------------------------SGKAK--IGAKAWMKQSSHRNYRTNI 714

Query: 745  KELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFL 802
              + E +++I   +L+ GV+DKAQ+    YGLVH   E+YG  T G +L+AL+RLFT +L
Sbjct: 715  DFMCESEVIIRNGELLCGVLDKAQYGSSAYGLVHCCHEVYGGETGGKVLTALARLFTAYL 774

Query: 803  QMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIE 861
            Q + GFT GV+D+L+    +R+R   +  S   G +   +A  L   A  +  +L+S+ +
Sbjct: 775  QFYKGFTMGVEDILVKHHADRKRCKVIKESTHCGTKAIQDAFNLPHTASEE--ELRSKWQ 832

Query: 862  KAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL-LSEGLLKPTGKNWISLMTTSGAKGS 920
             A            D+K     N    S+ IN++ +  GL +   +N + LM  SGAKGS
Sbjct: 833  DAHLHKDQRDFHMVDLKFKEVAN--LCSNEINKVCMPLGLHRSFPENNLQLMVQSGAKGS 890

Query: 921  KVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYY 980
             VN  QIS  LGQ ELEG+R P M SGK+LP F P+D++P++GGF+  RFLTG++P E++
Sbjct: 891  TVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYDFSPKSGGFVASRFLTGIKPSEFF 950

Query: 981  FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF YGEDG+D
Sbjct: 951  FHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLIVHYDLTVRDSDGSVVQFLYGEDGLD 1010

Query: 1041 VHQTSFI 1047
            + +T F+
Sbjct: 1011 IPKTQFL 1017



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 69/85 (81%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            +E++ Q    L+  K+  SL  PGE VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLG
Sbjct: 1170 SELSSQRLKDLLHLKWQQSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLG 1229

Query: 1180 IPRLQEILTIASKDIKTPVITCPLL 1204
            IPRL+EIL +AS +IKTP+++ P+L
Sbjct: 1230 IPRLREILMVASANIKTPMMSVPVL 1254



 Score = 67.4 bits (163), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 1/152 (0%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q    CPGH GHI+L + VYNPL F+ L+ L++  C  C H    R  +     +
Sbjct: 63  CATCMQDFNSCPGHLGHIELPLTVYNPLFFDKLFLLIRGSCLNCCHLTCPRAVIHLLFNQ 122

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
           L+L+  G + AA  L+  L        D D+       +     N +  R+      T  
Sbjct: 123 LKLLEVGLLQAAHDLEAVLSRFLEENRDGDIEEALRLHVEEVLHN-NQFRDQGAPVKTVC 181

Query: 121 QFAEAKLALLQFLKIETTKCGNCKAKNPRISK 152
           ++    ++     ++ + KC NCKA    + K
Sbjct: 182 EYRSKLISQFWKSQMSSKKCPNCKAGRSLVRK 213


>gi|45181573|gb|AAS55437.1| RNA polymerase I largest subunit [Taxus canadensis]
          Length = 545

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 319/619 (51%), Positives = 404/619 (65%), Gaps = 83/619 (13%)

Query: 549  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
            MNVHFPQDE+SR+EAYNIVNAN QY+ P++GDP+R LIQDHIVSA LLTK+DTFL ++++
Sbjct: 1    MNVHFPQDEISRSEAYNIVNANEQYIVPTSGDPIRGLIQDHIVSATLLTKRDTFLIKEDY 60

Query: 609  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
              L+Y++ VS+S      GK   +V I   +   L + P IWKPEPLWTGKQVIT VLNH
Sbjct: 61   QHLVYNACVSNSPPVFQRGKSLPKVGIIEDDYGFLSVAPTIWKPEPLWTGKQVITTVLNH 120

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
            +T G   F  E+  ++P D++                             KS  + +VV 
Sbjct: 121  VT-GETVFYHEQIWEVPGDYW----------------------------GKSSGELDVV- 150

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAG 788
                                     I  N+ + G+IDKAQF  YGLVH VQELYG+N AG
Sbjct: 151  -------------------------IQNNEHICGIIDKAQFGKYGLVHIVQELYGANVAG 185

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
             LLS  SRLFT +LQMHGFTCG+ DLL+    E  R+  L  SE++G++VHL+ L    G
Sbjct: 186  HLLSIFSRLFTGYLQMHGFTCGIADLLLKPGAEVRRQKILAKSEDLGEKVHLQFL----G 241

Query: 849  AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNW 908
               D + +  +IEK +R  G+ A A  D  M+S LN+ T S V N L  +GLLKP   N 
Sbjct: 242  GNEDLVHMGEDIEKLLRSKGETASARLDRLMSSALNRIT-SDVNNSLFPKGLLKPFPSNC 300

Query: 909  ISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIID 968
            +SLMTT+GAKG  V+F QISS LGQQELEGKRVPRMVSGKTLP F PWD   RAGGFI D
Sbjct: 301  LSLMTTTGAKGGLVDFTQISSLLGQQELEGKRVPRMVSGKTLPCFLPWDTRARAGGFISD 360

Query: 969  RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGS 1028
            RFLTGLRPQEYYFHCMAGR+GLVDTAVKTSRSGYLQRCLIKNLECLK+ YDY++RD+DGS
Sbjct: 361  RFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECLKVYYDYTIRDSDGS 420

Query: 1029 IVQFCYGEDGVDVHQTSFISKFDALAARER--GRGRGRNKFCDKGSHTFVMGRNQEMIYK 1086
            I+QF YGEDGVDV +TS +++FD LAA ++   +  G+++F              E+I++
Sbjct: 421  IIQFYYGEDGVDVMKTSCLTQFDVLAANQKLVIQRLGKDQF-------------DELIHQ 467

Query: 1087 KC-SGQLDASNAYIMELPDALKDNAEKFADKFLSNE------MAKQDFLKLVKHKFVLSL 1139
                G    S+++  +LP+ALK  A  F D  LS E      + +++FL L++ K++ SL
Sbjct: 468  SSKKGNSLVSDSHTNDLPEALKKKALGFIDS-LSKEKRQSLNLDRRNFLNLMRLKYITSL 526

Query: 1140 AQPGEPVGLLASQSVGEPS 1158
            AQPGEPVG++A QS+GEPS
Sbjct: 527  AQPGEPVGVIAGQSIGEPS 545


>gi|214028090|gb|ACJ63314.1| RNA polymerase I large subunit [Illicium parviflorum]
          Length = 540

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 312/616 (50%), Positives = 398/616 (64%), Gaps = 84/616 (13%)

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            VHFPQDE++RAEAYNIVNAN QY+ P++GDP+R LIQDHIVSAALLTKKDTFL ++++  
Sbjct: 1    VHFPQDEIARAEAYNIVNANEQYIVPTSGDPIRGLIQDHIVSAALLTKKDTFLTKEDYQH 60

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            L+Y++ VS++      GK   +V I + +   L L PAI KPEPLWTGKQVIT VL+++T
Sbjct: 61   LVYTACVSTTAPVFQRGKSFPKVGIVKDDHTFLSLPPAILKPEPLWTGKQVITTVLHYVT 120

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
            +G  PF ++R G                               K+  D  GK        
Sbjct: 121  KGSVPFTMKRAG-------------------------------KVPGDYWGKNS------ 143

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTL 790
                              E K+ I  N+L+ GVIDKAQF  +GLVH VQELYG++ AG L
Sbjct: 144  -----------------GELKVRIQNNELICGVIDKAQFGKHGLVHIVQELYGADVAGHL 186

Query: 791  LSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAE 850
            LS  SRLFT +LQMHGFTCGV DLL++   E +R+  L  SEE+G  VH + +   +G +
Sbjct: 187  LSVFSRLFTGYLQMHGFTCGVADLLLVPQAEDDRQKKLEKSEELGDNVHFQFIG-ANGDQ 245

Query: 851  IDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS 910
            ID   ++ E EK +R  GDAA A  D  M+S LN+ TS  V N L  +GLLKP   N +S
Sbjct: 246  IDLESMEEETEKHLRSKGDAASARLDRLMSSALNRVTSE-VNNALFPKGLLKPFPSNCLS 304

Query: 911  LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRF 970
            LMT +GAKG  VNF QISS LGQQELEGKRVPR++SGKTLP F PWD   RAGGFI DRF
Sbjct: 305  LMTMTGAKGGLVNFTQISSLLGQQELEGKRVPRVISGKTLPCFLPWDSRARAGGFISDRF 364

Query: 971  LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIV 1030
            LTGLRPQEYYFHCMAGR+GLVDTA+KT+RSGYLQRCLIKNLECLK+ YDY+VRD+DGS++
Sbjct: 365  LTGLRPQEYYFHCMAGRDGLVDTAIKTTRSGYLQRCLIKNLECLKVYYDYTVRDSDGSVI 424

Query: 1031 QFCYGEDGVDVHQTSFISKFDALAARER--GRGRGRNKFCDKGSHTFVMGRNQEMIYKKC 1088
            QF YGEDG+DV +TS +++F  LAA  +   +  G+++F   GS +              
Sbjct: 425  QFNYGEDGLDVMKTSCLTQFKVLAANNKLVSQKLGKDQF--DGSKSL------------- 469

Query: 1089 SGQLDASNAYIMELPDALKDNAEKFADKFLS------NEMAKQDFLKLVKHKFVLSLAQP 1142
                 +S++YI +LP+AL++  + F            N   +  FL L++ K++ SLAQP
Sbjct: 470  -----SSDSYIKDLPEALENKVQDFISGLSKQKRQSLNLKKRTGFLNLMRLKYMSSLAQP 524

Query: 1143 GEPVGLLASQSVGEPS 1158
            GEPVG++A QS+GEPS
Sbjct: 525  GEPVGVIAGQSIGEPS 540


>gi|345483754|ref|XP_001602617.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Nasonia
            vitripennis]
          Length = 1706

 Score =  574 bits (1480), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 338/842 (40%), Positives = 484/842 (57%), Gaps = 111/842 (13%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            L+P   K+ ++KLW+NE E    I         K      FF  + ++PPI   +    G
Sbjct: 262  LMPDQTKEYMQKLWQNEEETLKVIFPCLNNLTIKNPTDVFFFEVIPVLPPIVRPVNFLDG 321

Query: 302  DSVMEHPQTVLLSKVLQANIYLANAY--------VNQPDNAKVIVAR------------- 340
              ++EHPQT +   ++   + L N             PD  K++                
Sbjct: 322  -QLIEHPQTQVYRSIIINCLTLRNIIQAIQDGDTSRLPDAGKLVYNNTRGSSAIEKLHNA 380

Query: 341  WMNLQQSVNVLFDGKNAAGQRDMA--------SGICQLLEKKEGLFRQKLMGKRVNYACR 392
            W  LQ +V+ L D       RDM+         G+ Q++EKK+G+ R  +MGKRVNYA R
Sbjct: 381  WQELQANVDHLID-------RDMSKTTESANCQGLKQVIEKKQGVIRMHMMGKRVNYAAR 433

Query: 393  SVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL--DK 450
            SVI+PDP L ++EIGIP  FA +LTYP  VTPWNV +LR  I+NG ++HPGA      D 
Sbjct: 434  SVITPDPNLNIDEIGIPEAFATKLTYPVPVTPWNVAELRQLILNGPDVHPGAVMIEGDDG 493

Query: 451  LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-KMVYRHLQDGDVVLVNRQP 509
              T     N   R +I ++L T         + ++  F G K+V+RHLQ+GD++L+NRQP
Sbjct: 494  FITRLTAENYVQREAIAKRLLTVT-------EKANKFFHGVKIVHRHLQNGDMLLLNRQP 546

Query: 510  TLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNA 569
            TLHKPSIMAH  R+LKGEKTLR+HYANC  YNADFDGDEMN HFPQ+E++RAE Y I N 
Sbjct: 547  TLHKPSIMAHKARILKGEKTLRLHYANCKAYNADFDGDEMNAHFPQNELARAEGYYIANV 606

Query: 570  NNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKP 629
            +NQY+ P +G PL  LIQDH+++   L+ +  F  ++++ QL++S+              
Sbjct: 607  SNQYLVPKDGTPLSGLIQDHMIAGVRLSLRGKFFEKEDYMQLVFSA-------------- 652

Query: 630  GQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT-RGRPPFVVERGGKLPQDF 688
                 +S  +  ++ L PAI KP P+W+GKQVI+ ++ +I  RG+    +  G K+    
Sbjct: 653  -----LSVIQGNLILLPPAIIKPIPMWSGKQVISTIIINIIPRGKALINLTAGAKI---- 703

Query: 689  FKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELS 748
                                              + +V + +P +  E  KN    K +S
Sbjct: 704  -------------------------------GAHEWQVTKPRPWKCGEEFKNP---KTMS 729

Query: 749  EEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHG 806
            E +++I   +L+ G++DK  +    +GL+H V ELYG  T+  LLSA  ++F  +LQ  G
Sbjct: 730  ESEVIIRNGELLCGILDKKHYGATPFGLIHCVFELYGGTTSSRLLSAFGKVFQSYLQRIG 789

Query: 807  FTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRG 866
            FT G++D+L+ +  +++R   +    +IG+ +H   LE+ +   ++ +  K E       
Sbjct: 790  FTLGIEDILVKQKADKKRTEIISECRKIGESIHKSILEVPEDTPMEIVTAKMEESYWSNP 849

Query: 867  GGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQ 926
               A V   D K  + L+ +T +++    L  GL+K   +N + LM  SGAKGS VN  Q
Sbjct: 850  KFRAQV---DRKYKTALDVYT-NNINKTCLPAGLIKTFPENNLQLMVQSGAKGSTVNTMQ 905

Query: 927  ISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAG 986
            IS  LGQ ELEGKR P M+SGK+LPSF  +D APRAGGFI  RF+TG++PQE++FHCMAG
Sbjct: 906  ISCLLGQIELEGKRPPLMISGKSLPSFPAYDPAPRAGGFIDGRFMTGIQPQEFFFHCMAG 965

Query: 987  REGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            REGL+DTAVKTSRSGYLQRCLIK++E L I+YD +VRD+DGS+VQ  YGEDG+D+ ++ F
Sbjct: 966  REGLIDTAVKTSRSGYLQRCLIKHMEGLMINYDATVRDSDGSLVQIYYGEDGLDILKSRF 1025

Query: 1047 IS 1048
            ++
Sbjct: 1026 LN 1027



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 74/100 (74%)

Query: 1104 DALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTL 1163
            ++L DN  K      +  + K++  +++  K + +L  PGEPVGLLA+QS+GEPSTQMTL
Sbjct: 1160 ESLIDNYLKKKSGSFTTSIGKEELREVLCAKVMNTLCPPGEPVGLLAAQSIGEPSTQMTL 1219

Query: 1164 NTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            NTFH AGRGEMNVTLGIPRL+EIL +ASK+IKTP +  P 
Sbjct: 1220 NTFHFAGRGEMNVTLGIPRLREILMMASKNIKTPSMEIPF 1259



 Score = 60.1 bits (144), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 28/44 (63%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TCG   + C GHFGHIDL +PV NPL    L TLLK  C  C
Sbjct: 71  CRTCGCNVYKCTGHFGHIDLPMPVINPLFHKALQTLLKLACLNC 114


>gi|432880189|ref|XP_004073596.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Oryzias
            latipes]
          Length = 1705

 Score =  574 bits (1479), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 342/855 (40%), Positives = 471/855 (55%), Gaps = 122/855 (14%)

Query: 242  LLPSDVKDIIEKLWENE--FELCSF--ISDMQQQGFGKKAGH-SIFFLGVVLVPPIKFRL 296
            L  S  KD I K+WE E  F  C F  + +      G+   +  +FF  +++VPP +FR 
Sbjct: 250  LTASTAKDHIIKIWEKEGFFLSCLFPGLEETASPADGQGGFYPDLFFTELLVVPPCRFRP 309

Query: 297  PSKGGDSVMEHPQTVLLSKVLQ------------------------ANIYLANAYVNQPD 332
             ++ GD +  + QTV +  V++                        + I L   +   PD
Sbjct: 310  INRLGDQMFTNGQTVNMQAVMKDCEIIRKLLALMAGEKNAEGEETFSEIPLHQIF-QAPD 368

Query: 333  N--------------AKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
                              +   W+ LQ  VN++FD        +   G+ Q+LEKKEGLF
Sbjct: 369  QMDPTFLSGITGLTLTDKLYNMWIRLQSHVNIVFDSDMDKLMTEKYPGVRQILEKKEGLF 428

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR +++NG 
Sbjct: 429  RKHMMGKRVDYAARSVICPDMYIETNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGP 488

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
             +HPGA+  +  D   T+  P N   R ++ ++L T     + P K S      K+V RH
Sbjct: 489  NVHPGASMVINEDGRKTILSPTNFTQREAVAKQLLTPS---LGPHKMS-----MKIVNRH 540

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +++GDV+L+NRQPTLH+PSI AH  R+L GEK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 541  IKNGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQS 600

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E+ RAEAY +V+ N QY+ P +G PL  LIQDH+VS   +T +  F  RD++ +L++   
Sbjct: 601  ELGRAEAYTLVSTNQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRDQYTELVFR-- 658

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI-TAVLNHITRGRPP 675
                     T K        R   ++LP  PA+ KP+ LWTGKQV+ T +LN I     P
Sbjct: 659  -------GLTDK--------RGRVKLLP--PAVLKPQHLWTGKQVVSTLLLNVIPEKAVP 701

Query: 676  FVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEK 735
              +    K+P   +                                  K      PG + 
Sbjct: 702  LNLIGRSKIPSKAW---------------------------------IKLPPRAAPGYQP 728

Query: 736  EAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSA 793
            E+         + + +++I + +L+ GV+DKA +    YGLVH   ELYG  T+G LL  
Sbjct: 729  ES---------MCDSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLGC 779

Query: 794  LSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID 852
            L+RLFT +LQ++ GFT GV+D+L+     + R+  +  S  +G +    A  L  G  +D
Sbjct: 780  LARLFTAYLQLYRGFTLGVEDILVKPGANKRRRKIIESSRNVGSQALQAAFNLPPG--VD 837

Query: 853  PIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLM 912
            P   +S  + A         +  D K     N+  ++ +    +  GL      N + LM
Sbjct: 838  PADARSRWQDAHLNPDQRDFSTADHKFKEVANQ-VNNDINKVCMPVGLHTSFPDNNLQLM 896

Query: 913  TTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLT 972
              SGAKGS VN  QIS  LGQ ELEG+R P M SGK LP F P+D +P AGGF+  RFLT
Sbjct: 897  VQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKFLPCFQPYDPSPGAGGFVSGRFLT 956

Query: 973  GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQF 1032
            G++PQE++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF
Sbjct: 957  GIKPQEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQF 1016

Query: 1033 CYGEDGVDVHQTSFI 1047
             YGEDG+D+ +T F+
Sbjct: 1017 LYGEDGLDIPKTPFL 1031



 Score =  114 bits (284), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 55/104 (52%), Positives = 76/104 (73%), Gaps = 5/104 (4%)

Query: 1105 ALKDNAEKFADKFLSNEMAKQD-----FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPST 1159
            ++ ++     +K+L +  + Q        +L+ +K+  SL  PGE VGLLA+QS+GEPST
Sbjct: 1157 SVSESFHSITEKYLQDRSSAQSVDTNSLRQLLHYKWQRSLCDPGEAVGLLAAQSIGEPST 1216

Query: 1160 QMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            QMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+
Sbjct: 1217 QMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSIPV 1260



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 41/69 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q    CPGHFGHI+L +PVYNPL F+ LY L++  C  CH     R  +   + +
Sbjct: 64  CSTCCQDFNNCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSCHMLTCPRAAIHLLLNQ 123

Query: 61  LELIIKGDI 69
           L+L+  G I
Sbjct: 124 LKLVDHGAI 132


>gi|45181575|gb|AAS55438.1| RNA polymerase I largest subunit [Welwitschia mirabilis]
          Length = 543

 Score =  571 bits (1471), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 316/615 (51%), Positives = 397/615 (64%), Gaps = 83/615 (13%)

Query: 549  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
            MNVHFPQDE+SRAEAYNIVNAN Q+  P++GDP+R LIQDHIVSA LLTKKDTFL R+E+
Sbjct: 1    MNVHFPQDEISRAEAYNIVNANQQFTVPTSGDPIRGLIQDHIVSATLLTKKDTFLTREEY 60

Query: 609  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
              L+Y++ VSSS       K   +V I + E   +PL PAIWKP PLWTGKQVIT +L+H
Sbjct: 61   QNLVYTACVSSSSPFYRYAKDCPKVTIEKDESSFVPLPPAIWKPNPLWTGKQVITTILDH 120

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
            IT+          G LP   F ++                  K  ++  D  G+    +E
Sbjct: 121  ITK----------GTLP---FSSK------------------KAGRVPPDYWGRDSGEIE 149

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAG 788
                                   +LI  N+L+ GVIDKAQF  YGLVH V ELYG++ AG
Sbjct: 150  -----------------------VLIRDNELICGVIDKAQFGKYGLVHIVHELYGADAAG 186

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
             LLS  SRLFT FLQMHGFTCG  DLL++   E ER+  L  ++++G +VHL+ L L  G
Sbjct: 187  RLLSVFSRLFTAFLQMHGFTCGAVDLLLVPKAENERRKKLEKAKKLGDKVHLQFLGL-SG 245

Query: 849  AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNW 908
             E+   +++ EIEK +R  G+ A A  D  M+S LN  TS  V N L  +GLL P  KN 
Sbjct: 246  QELGEGQMEEEIEKILRSKGETASARLDRLMSSALNGVTSD-VNNSLFPKGLLVPFPKNC 304

Query: 909  ISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIID 968
            +SLMTT+GAKG  VNF QISS LGQQELEGKRVPRMVSGKTLP F PWD +PRAGGFI D
Sbjct: 305  LSLMTTTGAKGGMVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFSPWDSSPRAGGFISD 364

Query: 969  RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGS 1028
            RFLTGLR QEYYFHCMAGR+GLVDTAVKTSRSGYLQRCLIKNLECL + YD++VRD+DGS
Sbjct: 365  RFLTGLRLQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECLTVFYDHTVRDSDGS 424

Query: 1029 IVQFCYGEDGVDVHQTSFISKFDALAARER--GRGRGRNKFCDKGSHTFVMGRNQEMIYK 1086
            +VQF YGEDGVDV +TS ++ F+ LAA ++       ++KF +     F+ G+       
Sbjct: 425  VVQFIYGEDGVDVTKTSCLTAFEILAANQKLLSHRLHKDKFIN-----FLGGK------- 472

Query: 1087 KCSGQLDASNAYIMELPDALKDNAEKFADKF-----LSNEMAK-QDFLKLVKHKFVLSLA 1140
                   +SN   + LP AL+  A  F +       LS ++ K ++F+ L++ +++ SLA
Sbjct: 473  -------SSNESSVVLPKALQSEARAFFENLTKKQKLSMKLTKAKEFMDLLQLRYISSLA 525

Query: 1141 QPGEPVGLLASQSVG 1155
            QPGE VG++A QS+G
Sbjct: 526  QPGEAVGVIAGQSIG 540


>gi|444515209|gb|ELV10798.1| DNA-directed RNA polymerase I subunit RPA1 [Tupaia chinensis]
          Length = 1683

 Score =  571 bits (1471), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 329/826 (39%), Positives = 463/826 (56%), Gaps = 112/826 (13%)

Query: 272  GFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL-------- 323
            G   +   S+FFL  ++VPP ++R  ++ GD +  + QTV L  V++  + +        
Sbjct: 258  GMESRFNPSMFFLDFLVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDIVLIRKLLALMA 317

Query: 324  ---------ANAYVNQPDNAKVIVAR------------------WMNLQQSVNVLFDGKN 356
                     A    ++  ++ +++ R                  W+ LQ  VN++FD + 
Sbjct: 318  QEQKLPREVAALTTDEEKDSSIVMDRSFLSALPGQSLTDKLYNIWIRLQSHVNIVFDSEM 377

Query: 357  AAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRL 416
                 +   GI Q+LEKKEGLFR+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +L
Sbjct: 378  DKLMMEKYPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKL 437

Query: 417  TYPERVTPWNVVKLRDSIINGAEIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSR 474
            TYP+ VTPWNV +LR ++ING  +HPGA   +  D   T     +   R ++ ++L T  
Sbjct: 438  TYPQPVTPWNVQELRQAVINGPGVHPGAAMVINEDGSRTALSAVDVTQREAVAKQLLT-- 495

Query: 475  GAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY 534
                 P   +      K+V RH+++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HY
Sbjct: 496  -----PATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHY 550

Query: 535  ANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAA 594
            ANC  YNADFDGDEMN HFPQ E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A
Sbjct: 551  ANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGA 610

Query: 595  LLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEP 654
             +T +  F  R+++ +L+Y            T K G+  L            PAI KP  
Sbjct: 611  SMTIRGCFFTREQYMELVYR---------GLTDKVGRVKLFP----------PAILKPFA 651

Query: 655  LWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNK 714
            LWTGKQV++ +L +I              +P+D                     L+ T K
Sbjct: 652  LWTGKQVVSTLLINI--------------IPEDHI------------------PLNLTGK 679

Query: 715  MHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--Y 772
                     K+     PG +  +         + E +++I K +L+ GV+DKA +    Y
Sbjct: 680  AKISGKAWVKDAPRPVPGFDPNS---------MCESQVVIRKGELLCGVLDKAHYGSSAY 730

Query: 773  GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGS 831
            GLVH   E+YG  T+G +L+ L+RLFT +LQ++ GFT GV+D+L+    +  R   +  S
Sbjct: 731  GLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKSKADVRRHRIIEES 790

Query: 832  EEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSV 891
               G R    AL L + A  D ++ K   + A  G         D+K   ++N H S+ +
Sbjct: 791  TLCGPRAVRAALNLPEAASCDEVRGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEI 847

Query: 892  INELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLP 951
                +  GL +   +N + +M  SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP
Sbjct: 848  NKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLP 907

Query: 952  SFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 1011
             F P+++ PRAGGF+  RFLTG+ P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+L
Sbjct: 908  CFEPYEFTPRAGGFVTGRFLTGINPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHL 967

Query: 1012 ECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS--KFDALAA 1055
            E L + YD +VRD+DGS+VQF YGEDG+D+ +T F+   +F  LA+
Sbjct: 968  EGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLAS 1013



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 79/111 (71%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL  PGE VGLLA+QS
Sbjct: 1130 VSETFERKVDDYSQEWAAQAEQSYEKSELSLDRLKTLLQLKWQRSLCDPGEAVGLLAAQS 1189

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L
Sbjct: 1190 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVL 1240



 Score = 46.6 bits (109), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 41/76 (53%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   V +
Sbjct: 64  CSTCVQDFNHCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQ 123

Query: 61  LELIIKGDIIAAKSLD 76
           L ++  G + A   L+
Sbjct: 124 LRVLAVGALQAVYELE 139


>gi|427780187|gb|JAA55545.1| Putative rna polymerase iii large subunit [Rhipicephalus pulchellus]
          Length = 1339

 Score =  570 bits (1470), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 320/723 (44%), Positives = 434/723 (60%), Gaps = 85/723 (11%)

Query: 341  WMNLQQSVNVLFDGK-NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDP 399
            W  LQ +VNV+ D + +         GI Q+LEKKEGLFR+ +MGKRVNYA RSVISPDP
Sbjct: 5    WNALQVAVNVVVDSELDRLNTNKGTPGIKQILEKKEGLFRKHMMGKRVNYAARSVISPDP 64

Query: 400  YLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY-LDKLSTMRL-P 457
            Y+ V EIG+P  FA +L+YPE VT  N+ +LR ++ING +I+PGA     +    +RL P
Sbjct: 65   YIDVEEIGVPMVFATKLSYPEPVTERNIAELRRAVINGPDIYPGALLVEREDGGVIRLDP 124

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEF-EGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
             N+  R ++ ++L T       P +     F   K+V+RHL+ GD++L+NRQPTLHKPSI
Sbjct: 125  TNRTRREAVAKQLLT-------PTEAPQRTFARSKIVHRHLRQGDMLLLNRQPTLHKPSI 177

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            MAH  RVL GE+TLR+HYANC  YNADFDGDEMN H PQ  +++AEA  + + N QY+ P
Sbjct: 178  MAHRARVLPGERTLRLHYANCKCYNADFDGDEMNAHLPQSPLAQAEASEVASVNRQYLVP 237

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
             +G PL  LIQDH++  +LLT +  F  R+++ QL++         G+ T          
Sbjct: 238  KDGTPLSGLIQDHVIGGSLLTMQGRFFTREDYNQLVF---------GALT--------FV 280

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVI-TAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
            +   ++LP  PAI KP+ LWTGKQV+ T +LN I  G+PP  VE   K+P          
Sbjct: 281  KIGIKLLP--PAIQKPQMLWTGKQVLSTVLLNCIPHGKPPPTVEGKAKIPA--------- 329

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
                                                   K   K    E  ++E  ++I 
Sbjct: 330  ---------------------------------------KAWPKGGEAEAFMNEGDVIIR 350

Query: 756  KNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM-HGFTCGVD 812
              +L+ G++DKA +    +GLVH   ELYG   +  +LSA +RLFT +LQ+  GFT G++
Sbjct: 351  DGELLCGILDKAHYGPTQFGLVHVCYELYGGAISSLVLSAFARLFTHYLQIFSGFTLGIE 410

Query: 813  DLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
            D+L+    +R+RK  +  ++  G  V + AL LE+  E+D  +L+  +  A     D  +
Sbjct: 411  DILVTDKADRKRKRIMKKAKTQGDEVAIRALGLENEDELDAAQLEDRLRAAHVARNDRQM 470

Query: 873  AYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
               D  M S +    ++ +    + +GLLK    N + LM  SGAKG  VN  QIS  LG
Sbjct: 471  KQLDSSMKS-VTDDVNNQINRACIPDGLLKKFPSNNLQLMVQSGAKGGMVNCMQISCLLG 529

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            Q ELEG+RVP M+SG+TLPSF  +D +PRAGGF+  RFLTG+RPQEY+FHCMAGREGLVD
Sbjct: 530  QIELEGRRVPLMLSGRTLPSFLHYDTSPRAGGFVDGRFLTGIRPQEYFFHCMAGREGLVD 589

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFI--SKF 1050
            TAVKTSRSGYLQRCLIK+LE L + YD +VRD+DGS++QF YGEDG+DV +   +  S+F
Sbjct: 590  TAVKTSRSGYLQRCLIKHLEGLMVCYDQTVRDSDGSVIQFQYGEDGLDVLKMQMLKPSQF 649

Query: 1051 DAL 1053
              L
Sbjct: 650  PVL 652



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 64/79 (81%)

Query: 1126 DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1185
            +F KLV  + + ++  PGEPVGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPR++E
Sbjct: 815  EFRKLVYMRNMKAICDPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRMRE 874

Query: 1186 ILTIASKDIKTPVITCPLL 1204
            IL +AS +I TP +   LL
Sbjct: 875  ILMVASANIATPTMDLHLL 893


>gi|300708969|ref|XP_002996654.1| hypothetical protein NCER_100217 [Nosema ceranae BRL01]
 gi|239605972|gb|EEQ82983.1| hypothetical protein NCER_100217 [Nosema ceranae BRL01]
          Length = 1079

 Score =  569 bits (1467), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 365/974 (37%), Positives = 514/974 (52%), Gaps = 186/974 (19%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
             L  D+ DI +K++ NE +L         +     A + +FFL  + VPP+KFR  +   
Sbjct: 213  FLIEDIIDIFKKVFNNEKKL--------MESIFSTADYKMFFLFNISVPPVKFRPVNFFN 264

Query: 302  DSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQR 361
              + E+PQ +  +++L+ NI L       PD        W  LQ ++ + FD   +   +
Sbjct: 265  GRMYENPQNIHYTRILKNNIELQT----NPD-------FWPELQAAILIYFDSSKSQYSK 313

Query: 362  D--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYP 419
                A+G  Q+LEKKEGLFR+ +MGKRVN+A RSVISPDP L   E+GIP  FA +LT+P
Sbjct: 314  GDGAAAGHKQILEKKEGLFRRNIMGKRVNFAARSVISPDPNLHTREMGIPKIFAEKLTFP 373

Query: 420  ERVTPWNVVKLRDSIINGAEIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAI 477
            ERV   N  KLR ++ING E  PGA      + L  +     +K R+++  +L   +G  
Sbjct: 374  ERVNANNYDKLRKAVINGREF-PGANAIQTGNNLQNLEYISYEK-RVALANQL--LKGT- 428

Query: 478  VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 537
                         K V+RHL  GD VLVNRQPTLHK SIM H V+VL+GEKTLRMHY NC
Sbjct: 429  -------------KTVWRHLNTGDTVLVNRQPTLHKQSIMGHKVKVLEGEKTLRMHYVNC 475

Query: 538  STYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
              YNADFDGDEMNVH PQ  V+++EA ++   ++ Y+ P+NG+P+R L QDH+V A+ LT
Sbjct: 476  KPYNADFDGDEMNVHLPQSYVAKSEAESLTLNDHMYLVPTNGEPIRGLTQDHVVGASRLT 535

Query: 598  KKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWT 657
             KD+F  ++++  LL S            G   +R+++           P I +P  L++
Sbjct: 536  IKDSFYTKEQYIDLLQS------------GLSNRRLILDN---------PCISQPVSLYS 574

Query: 658  GKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHK 717
            GKQ+ + +L                                    KN    +S TN   K
Sbjct: 575  GKQIASGIL------------------------------------KNLNLYISVTN---K 595

Query: 718  DKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLV 775
             K G K  +     G E+E                +  + +++ G++DK       Y L+
Sbjct: 596  GKIGAKTWL-----GHEEEGNS-------------IFLEGEMLTGILDKNVIGPTQYSLI 637

Query: 776  HTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIG 835
            H    LYG + A  LL+   R+   +L   GFT  +DDLL+    +  R + +    E  
Sbjct: 638  HACGHLYGFSVANDLLTYFGRVVNRYLFNFGFTVRIDDLLLDSFADSSRNDIIKAGNENA 697

Query: 836  KRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV-----AYFDMKMTSQLNKHTSSS 890
                               K+K +I   M+   D  +     A+ D  +  ++N + ++ 
Sbjct: 698  -------------------KIKQKI--YMKDNPDYYINSNKTAHLDSIIREEMN-NVTTQ 735

Query: 891  VINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTL 950
            ++N  +  G LK    N + L+  +GAKGS VN  QIS  LGQQELEGKRV  M+SGKTL
Sbjct: 736  IVNTCVPLGQLKKFPNNNMGLVIITGAKGSIVNLSQISGSLGQQELEGKRVSYMISGKTL 795

Query: 951  PSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1010
            P F  ++ +P AGG++  RFLTG+ P EY+FHCMAGREGL+DTAVKTSRSGYLQRCL+K+
Sbjct: 796  PCFERFETSPSAGGYVFQRFLTGVNPSEYFFHCMAGREGLIDTAVKTSRSGYLQRCLVKH 855

Query: 1011 LECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDK 1070
            LE L++ YD SVR     I+Q+ YGEDG+D  ++SF+ + +                   
Sbjct: 856  LEGLRVEYDLSVR-MGTKIIQYTYGEDGLDCTKSSFLKQIE------------------- 895

Query: 1071 GSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKL 1130
                          +K  S    A N   ++    LK    ++ D  +S E    +  KL
Sbjct: 896  -------------FFKNNSNMFFADN--FIKFCQELKYTNREWKD-LISKE--SDEIKKL 937

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
               ++V +L  PGE VG++A QSVGEPSTQMTLNTFHLAG G  NVTLGIPRL+EI+ +A
Sbjct: 938  CLKQYVNALVDPGEAVGVIAGQSVGEPSTQMTLNTFHLAGVGARNVTLGIPRLREIVMVA 997

Query: 1191 SKDIKTPVITCPLL 1204
            +K I+TP+I  PL+
Sbjct: 998  AKKIQTPLIYVPLI 1011



 Score = 73.6 bits (179), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 15/151 (9%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           CKTC      CPGHFG+I L  PV+NPLLF+ +Y++LK  C  C   K + R+      K
Sbjct: 59  CKTCNLSYLTCPGHFGYIKLFKPVFNPLLFSTMYSVLKSACHKCGLLKITNRDRLIYFLK 118

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
           L L+ +G  I     +LD  S  +N  ++D+  K +  ++          N   QE+ +L
Sbjct: 119 LNLLKRGYPID----NLDYLSTCNN--ENDLCKKIADLLLKYSDKSRASSNFLHQEFCNL 172

Query: 121 QFAEAKLALLQFLKIETTKCGNCKAKNPRIS 151
            F  A            TKC  CK  + +++
Sbjct: 173 IFKTAS---------ARTKCAQCKMSSQKLT 194


>gi|427792959|gb|JAA61931.1| Putative rna polymerase iii large subunit, partial [Rhipicephalus
            pulchellus]
          Length = 1661

 Score =  563 bits (1452), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 355/893 (39%), Positives = 485/893 (54%), Gaps = 158/893 (17%)

Query: 242  LLPSDVKDIIEKLWENEFELC-SFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKG 300
            L P + +  + KLW  E  L  +    +       ++   +FFL  ++VPP +FR  +  
Sbjct: 159  LTPVEARAHLRKLWAKERPLLQNLFGILALASSSHESPVDMFFLEALVVPPTRFRPMNFM 218

Query: 301  GDSVMEHPQTVLLSKVLQAN-------IYLANAYVNQPD--------------------- 332
                 E+ QTV LS+VLQ           LA   ++Q +                     
Sbjct: 219  NGRKYENAQTVSLSRVLQCCDTLRAVLKLLARRGMDQSERPEDQMETERLEQLVGKVMGK 278

Query: 333  --NAKVIVARWMNLQQSVNVLFDGK-NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNY 389
              +AK+  A W  LQ +VNV+ D + +         GI Q+LEKKEGLFR+ +MGKRVNY
Sbjct: 279  DLDAKMHFA-WNALQVAVNVVVDSELDRLNTNKGTPGIKQILEKKEGLFRKHMMGKRVNY 337

Query: 390  ACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY-L 448
            A RSVISPDPY+ V EIG+P  FA +L+YPE VT  N+ +LR ++ING +I+PGA     
Sbjct: 338  AARSVISPDPYIDVEEIGVPMVFATKLSYPEPVTERNIAELRRAVINGPDIYPGALLVER 397

Query: 449  DKLSTMRL-PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEF-EGKMVYRHLQDGDVVLVN 506
            +    +RL P N+  R ++ ++L T       P +     F   K+V+RHL+ GD++L+N
Sbjct: 398  EDGGVIRLDPTNRTRREAVAKQLLT-------PTEAPQRTFARSKIVHRHLRQGDMLLLN 450

Query: 507  RQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDG-------------------- 546
            RQPTLHKPSIMAH  RVL GE+TLR+HYANC  YNADFDG                    
Sbjct: 451  RQPTLHKPSIMAHRARVLPGERTLRLHYANCKCYNADFDGXXTLHKPSIMAHRARVLPGE 510

Query: 547  -------------------DEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQ 587
                               DEMN H PQ  +++AEA  + + N QY+ P +G PL  LIQ
Sbjct: 511  RTLRLHYANCKCYNADFDGDEMNAHLPQSPLAQAEASEVASVNRQYLVPKDGTPLSGLIQ 570

Query: 588  DHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLP 647
            DH++  +LLT +  F  R+++ QL++       G  +F  K G ++L            P
Sbjct: 571  DHVIGGSLLTMQGRFFTREDYNQLVF-------GALTFV-KIGIKLLP-----------P 611

Query: 648  AIWKPEPLWTGKQVI-TAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDK 706
            AI KP+ LWTGKQV+ T +LN I  G+PP  VE                           
Sbjct: 612  AIQKPQMLWTGKQVLSTVLLNCIPHGKPPPTVE--------------------------- 644

Query: 707  GKLSKTNKMHKDKSGKKKEVVEGKP-GEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVID 765
                          GK K   +  P G E EA  N        E  ++I   +L+ G++D
Sbjct: 645  --------------GKAKIPAKAWPKGGEAEAFMN--------EGDVIIRDGELLCGILD 682

Query: 766  KAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM-HGFTCGVDDLLILKDKER 822
            KA +    +GLVH   ELYG   +  +LSA +RLFT +LQ+  GFT G++D+L+    +R
Sbjct: 683  KAHYGPTQFGLVHVCYELYGGAISSLVLSAFARLFTHYLQIFSGFTLGIEDILVTDKADR 742

Query: 823  ERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQ 882
            +RK  +  ++  G  V + AL LE+  E+D  +L+  +  A     D  +   D  M S 
Sbjct: 743  KRKRIMKKAKTQGDEVAIRALGLENEDELDAAQLEDRLRAAHVARNDRQMKQLDSSMKS- 801

Query: 883  LNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
            +    ++ +    + +GLLK    N + LM  SGAKG  VN  QIS  LGQ ELEG+RVP
Sbjct: 802  VTDDVNNQINRACIPDGLLKKFPSNNLQLMVQSGAKGGMVNCMQISCLLGQIELEGRRVP 861

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
             M+SG+TLPSF  +D +PRAGGF+  RFLTG+RPQEY+FHCMAGREGLVDTAVKTSRSGY
Sbjct: 862  LMLSGRTLPSFLHYDTSPRAGGFVDGRFLTGIRPQEYFFHCMAGREGLVDTAVKTSRSGY 921

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFI--SKFDAL 1053
            LQRCLIK+LE L + YD +VRD+DGS++QF YGEDG+DV +   +  S+F  L
Sbjct: 922  LQRCLIKHLEGLMVCYDQTVRDSDGSVIQFQYGEDGLDVLKMQMLKPSQFPVL 974



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 64/79 (81%)

Query: 1126 DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1185
            +F KLV  + + ++  PGEPVGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPR++E
Sbjct: 1137 EFRKLVYMRNMKAICDPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRMRE 1196

Query: 1186 ILTIASKDIKTPVITCPLL 1204
            IL +AS +I TP +   LL
Sbjct: 1197 ILMVASANIATPTMDLHLL 1215


>gi|195431457|ref|XP_002063757.1| GK15841 [Drosophila willistoni]
 gi|194159842|gb|EDW74743.1| GK15841 [Drosophila willistoni]
          Length = 1649

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 335/801 (41%), Positives = 472/801 (58%), Gaps = 107/801 (13%)

Query: 281  IFFLGVVLVPPIKFRLPSKGGDSVMEHPQT------VLLSKVLQANIYLAN--------- 325
            +FF+  + V P + R  +   D +  +PQT      +L + VL   +   N         
Sbjct: 293  MFFMETIPVTPPRARPMNVINDMLKGNPQTDIYVNIILNNHVLNVVLKFMNGNQEKLSEE 352

Query: 326  ---AYVNQ--PDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQ 380
               AY N    ++ + +   W++LQ SV+VL D  N + +   A G+ Q+LEKK+GL R+
Sbjct: 353  AMAAYQNLKGSNSHEKLYNAWLSLQTSVDVLLD-VNMSREVKSAEGLKQVLEKKDGLIRK 411

Query: 381  KLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEI 440
             +MGKRVNYA R+VI+PDP + V+EIGIP  FA +L+YP  VT WNV +LR  ++NG ++
Sbjct: 412  HMMGKRVNYAARTVITPDPNINVDEIGIPDIFARKLSYPVPVTEWNVTELRKMVMNGPDV 471

Query: 441  HPGATHYLDK--LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-KMVYRHL 497
            HPGA +  +    +T     N   R S+ + L +             N  EG K+V+RH+
Sbjct: 472  HPGANYIQESNGFTTYIPADNAAKRASMAKLLLS-------------NPKEGVKIVHRHV 518

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
             +GDV+L+NRQP+LHKPSIMAH  R+L GEKT R+HY+NC  YNADFDGDEMN H+PQ E
Sbjct: 519  LNGDVLLLNRQPSLHKPSIMAHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSE 578

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
            V+RAEAYN+VN  N Y+ P +G PL  LIQDH++S   L+ +  F NR+++ QL++    
Sbjct: 579  VARAEAYNLVNVANNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQLVF---- 634

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
               GL    G           + ++LP  PAI KP  LW+GKQV++ ++ ++        
Sbjct: 635  --QGLSHLKG-----------DVKLLP--PAIMKPAILWSGKQVLSTIIINL-------- 671

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEA 737
                  +P  F   R N D             +K         GK  +V   +P      
Sbjct: 672  ------IPDGF--ERINLD-----------SFAKI-------GGKNWQVTSSRP------ 699

Query: 738  EKNKSK---EKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLS 792
              N  K   E+EL E ++ I   +L+ GV+DK Q+    +GL+H + ELYG + +  LL+
Sbjct: 700  -PNGGKPLTEQELGESQVQIRNGELLVGVLDKQQYGATTFGLIHCMYELYGGDVSTRLLT 758

Query: 793  ALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID 852
            A +++FT FLQ+ GFT GV D+L+  + +R+R+  +  S EIG      ALEL++    D
Sbjct: 759  AFTKVFTFFLQLEGFTLGVKDILVTGEADRKRRKIIKESREIGNSAVAAALELDEVPPHD 818

Query: 853  PIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLM 912
              +L  ++E+A        V   D K  S L+ +T + +    L  GL+     N + LM
Sbjct: 819  --ELAEQMEQAYVKDPKFRV-LLDRKYKSLLDGYT-NDINKTCLPGGLITKFPSNNLQLM 874

Query: 913  TTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLT 972
              SGAKGS VN  QIS  LGQ ELEGKR P M+SGK+LPSF  ++ +P++GGFI  RF+T
Sbjct: 875  VLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFPSFETSPKSGGFIDGRFMT 934

Query: 973  GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQF 1032
            G++PQ+++FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE L I YD +VRD+D S+VQF
Sbjct: 935  GIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSIHYDLTVRDSDNSVVQF 994

Query: 1033 CYGEDGVDVHQTSFIS-KFDA 1052
             YGEDG+D+ ++ F S KF A
Sbjct: 995  LYGEDGLDILKSKFFSDKFCA 1015



 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/84 (65%), Positives = 68/84 (80%)

Query: 1124 KQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRL 1183
            KQ+   ++  K + +LA PGEPVGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL
Sbjct: 1155 KQNIADIMHIKSIKALASPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRL 1214

Query: 1184 QEILTIASKDIKTPVITCPLLVGK 1207
            +EIL +AS +IKTP +  P+  G+
Sbjct: 1215 REILMLASSNIKTPSMDIPIKAGQ 1238



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC   Q  CPGH GHI+L   VYNP    L+  LL   C  C   +    E E  + +
Sbjct: 66  CGTCLLMQD-CPGHMGHIELGSLVYNPFFIKLVQRLLCIFCLHCFKMQMKDHECEIIMLQ 124

Query: 61  LELIIKGDIIAAKSLDL 77
           L LI  G II A+ L+L
Sbjct: 125 LRLIDAGYIIEAQELEL 141


>gi|242012717|ref|XP_002427074.1| DNA-directed RNA polymerase I largest subunit, putative [Pediculus
            humanus corporis]
 gi|212511332|gb|EEB14336.1| DNA-directed RNA polymerase I largest subunit, putative [Pediculus
            humanus corporis]
          Length = 1659

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 385/1071 (35%), Positives = 557/1071 (52%), Gaps = 165/1071 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC Q    C GHFGHI+L +PV NPL    + TLLK  C +C+            + +
Sbjct: 61   CLTCRQTIRNCCGHFGHINLPLPVINPLFHKEVLTLLKLSCSYCYKLAIPPNLRNLFIYQ 120

Query: 61   LELIIKGDIIAAKSLD---LDLPSESSNPEDSDVSNKSSCSMVTP---RGNYDNVRNLKP 114
            ++L+  G +  A+ L+   L+L    SN   + V  ++    +       N  N+ + + 
Sbjct: 121  MKLLDHGKMAEAEDLETKALNLKEMDSNDAQNYVVKENYSEYLKELELDSNPVNIPSSRS 180

Query: 115  QEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANL 172
             E   L+F      L +F+K  I    C +CK    RI K  F    ++ +   +I    
Sbjct: 181  IESLRLKF------LNEFIKQIILPKSCTHCKNPFKRIIK--FQNKIISSITKVEI---- 228

Query: 173  IRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFK 232
                                A    D P+ ++FN               KGS        
Sbjct: 229  --------------------AKKFKDVPQ-NAFN---------------KGS-------- 244

Query: 233  KQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPI 292
            KQ+  F   + P + ++ + K+WE   +L   +  + +          +FF+ V+LV P 
Sbjct: 245  KQETTF---ITPKESRETLRKIWEESKDLVEELMPILKNS-NLSYPTDLFFMDVILVTPP 300

Query: 293  KFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA-----NAYVNQPDNAKVIVAR---WMNL 344
            K R            P      K +    Y +       Y++    A V+      W+ L
Sbjct: 301  KAR------------PVEFANVKAVDTGDYNSFPPEYKVYIDGIRGATVLEKLHECWLQL 348

Query: 345  QQSVNVLFDGKNA-AGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
            Q  ++ L D   A    +   SG+ Q+LEKKEG+ R  +MGKRVN+A R+VI+PDP L +
Sbjct: 349  QNDIDTLLDSSAARISLKKGISGLKQVLEKKEGVLRMHMMGKRVNFAARTVITPDPNLNI 408

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL-STMRLP---PN 459
             EIG+P YFA +LTYP  V  +NV +LR  + NG +++PGAT   ++  S ++L     N
Sbjct: 409  QEIGVPEYFAKKLTYPVGVNFFNVEELRKMVQNGPDVYPGATLIENENGSLIKLTGGEEN 468

Query: 460  KKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAH 519
            +K RI I + L       ++  +     F+ K V+RHL +GD+VL+NRQPTLH+PSIMAH
Sbjct: 469  RKKRIGISKLL-------LKSIEGDPTSFKTKKVHRHLLNGDIVLLNRQPTLHRPSIMAH 521

Query: 520  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNG 579
            +V++LK EKT R+HY+NC  YNADFDGDEMN+H PQ E+SR+E YNIVN  N Y+ P +G
Sbjct: 522  IVKILKNEKTFRLHYSNCKAYNADFDGDEMNLHLPQTELSRSEGYNIVNVANHYLVPKDG 581

Query: 580  DPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSE 639
             PL  LIQDHIVS   LT K+    ++++ QL+Y                     +S   
Sbjct: 582  TPLGGLIQDHIVSTVRLTMKNQMFEKEDYHQLVYQG-------------------LSHKN 622

Query: 640  QEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQS 699
              ++ L P I KP+ LW+GKQ+I+ +L +I               P+D     FN + + 
Sbjct: 623  GNIILLPPCIVKPKKLWSGKQIISTILINII--------------PKDKDLISFNGNAKI 668

Query: 700  DRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDL 759
                    KL +T                G P +    E+ KS + E+SE  +++ K  L
Sbjct: 669  SV------KLWET----------------GSPRKWMCGEEFKS-DNEMSESSIILRKGIL 705

Query: 760  VRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLIL 817
            V GV+DK  F    +GL H + ELYG   +   L+++ RL T FLQM GFT GV+D+L+ 
Sbjct: 706  VTGVLDKQHFGATPFGLTHCLYELYGGECSSKFLNSIGRLSTAFLQMTGFTLGVEDILVK 765

Query: 818  KDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDM 877
               ++ RK  +    + G  +  +AL LE+     P  L   +E+             D 
Sbjct: 766  AKADKSRKKIIEKLRKCGDEIAAKALGLEE----IPNDLYERLEREYFKNRTMFKGKLDQ 821

Query: 878  KMTSQLNKHTSSSVINEL-LSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
            +   +LN  T+   IN++ L +GL+    +N + LM TSGAKGS VN  QIS  LGQ EL
Sbjct: 822  EYKVKLNSFTNE--INKVCLPKGLISRFPENNLQLMVTSGAKGSTVNTMQISCLLGQIEL 879

Query: 937  EGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVK 996
            EGKR P M+SGK+LPS+  +D  P AGG+I +RF+TG+ PQE++FHCMAGREGL+DTAVK
Sbjct: 880  EGKRPPFMISGKSLPSYKAFDTQPCAGGYIDNRFMTGISPQEFFFHCMAGREGLIDTAVK 939

Query: 997  TSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFI 1047
            TSRSGYLQRCLIK+LE + I YD +VRD DG+++QF YG DG++V +++F 
Sbjct: 940  TSRSGYLQRCLIKHLEGVSIGYDGTVRDHDGTVIQFIYGGDGLEVQKSTFF 990



 Score =  123 bits (309), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/74 (77%), Positives = 65/74 (87%)

Query: 1130 LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTI 1189
            +V+ K++LSL QPGEPVGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL  
Sbjct: 1143 MVEAKYMLSLCQPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMT 1202

Query: 1190 ASKDIKTPVITCPL 1203
            ASK IKTP +  PL
Sbjct: 1203 ASKSIKTPYVDVPL 1216


>gi|195123291|ref|XP_002006141.1| GI20875 [Drosophila mojavensis]
 gi|193911209|gb|EDW10076.1| GI20875 [Drosophila mojavensis]
          Length = 1649

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 335/860 (38%), Positives = 489/860 (56%), Gaps = 112/860 (13%)

Query: 225  GAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHS---- 280
            G VP    + K +F+      + +  + K++EN  E    +  +      + +       
Sbjct: 239  GDVPESSGQNKVIFA-----DECRRYLRKIYENYPEFLKLLVPVLNLNSSESSPSEDYSP 293

Query: 281  --IFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL--------------- 323
              IFF+  + V P + R  +   D +  +PQT +   +++ N  L               
Sbjct: 294  VDIFFMDTIPVTPPRARPMNVINDMMKGNPQTDIYVNIIENNHVLNVILKFMKGQQDKLN 353

Query: 324  ---ANAYVNQ--PDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
                 AY N       + +   W++LQ SV+VL D  N +     A G+ Q+LEKKEGL 
Sbjct: 354  DAARAAYQNMRGVSGHEKLYNAWLSLQSSVDVLLD-VNLSRDIKSAEGLKQVLEKKEGLI 412

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRVNYA R+VI+PDP + V+EIGIP  FA +L+YP  VT WNV++LR  ++NG 
Sbjct: 413  RKHMMGKRVNYAARTVITPDPNIDVDEIGIPDIFARKLSYPVPVTEWNVIELRKMVMNGP 472

Query: 439  EIHPGATHYLDK--LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-KMVYR 495
            ++HPGA +  D   L+T     N   R S+ + L +             N  +G K+V+R
Sbjct: 473  DVHPGANYIQDSKGLTTYIPADNAAKRASMAKLLLS-------------NPKDGVKIVHR 519

Query: 496  HLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQ 555
            H+ +GDV+L+NRQP+LHKPSIMAH  R+L GEKT R+HY+NC  YNADFDGDEMN H+PQ
Sbjct: 520  HVLNGDVLLLNRQPSLHKPSIMAHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQ 579

Query: 556  DEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSS 615
             EV+RAEAYN+VN  + Y+ P +G PL  LIQD ++S   L+ +  F NR+++ QL++  
Sbjct: 580  SEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDQVISGVKLSIRGRFFNREDYQQLVF-- 637

Query: 616  GVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPP 675
                 GL    G             ++LP  P+I KP  LW+GKQV++ ++ ++      
Sbjct: 638  ----QGLSHLKG-----------NVKLLP--PSILKPAILWSGKQVLSTIIINL------ 674

Query: 676  FVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEK 735
                    +P  +   R N D             +K    + + +  +K +    P    
Sbjct: 675  --------IPDGY--ERINLD-----------SFAKIGGKNWNVARSRKPLCGSTP---- 709

Query: 736  EAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSA 793
                   +E+ELSE ++ I   +L+ GV+DK Q+    +GL+H + ELYG + +  LL+A
Sbjct: 710  -------QEQELSESQVQIRNGELLVGVLDKQQYGATTFGLIHCMYELYGGDVSTRLLTA 762

Query: 794  LSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
             +++FT FLQ+ GFT GV D+L+ ++ +R+R+  +H   ++G      ALEL+D    D 
Sbjct: 763  FTKVFTFFLQLEGFTLGVKDILVTEEADRKRRKIIHECRDVGNSAVAAALELDDVPPHD- 821

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
             +L  ++E A        V   D K  S L+ +T + +    L  GL+     N + LM 
Sbjct: 822  -ELAEQMEAAYVKDAKFRV-LLDRKYKSMLDGYT-NDINKTCLPGGLISKFPSNNLQLMV 878

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEGKR P M+SGK+LPSF  ++ +P++GGFI  RF+TG
Sbjct: 879  LSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGFIDGRFMTG 938

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            ++PQ+++FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE L + YD +VRD+D S+VQF 
Sbjct: 939  IQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFL 998

Query: 1034 YGEDGVDVHQTSFIS-KFDA 1052
            YGEDG+D+ +  F + KF A
Sbjct: 999  YGEDGLDILKAKFFNGKFCA 1018



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/104 (51%), Positives = 76/104 (73%), Gaps = 1/104 (0%)

Query: 1105 ALKDNAEKFADKFLSNEMAKQDFLKLVKH-KFVLSLAQPGEPVGLLASQSVGEPSTQMTL 1163
            ++ +   +  + + +   A++  +  + H K + +LA PGEPVGL+A+QS+GEPSTQMTL
Sbjct: 1138 SVSERTRQLIEDYAAKHPAQKHIISDIMHMKSIKALASPGEPVGLIAAQSIGEPSTQMTL 1197

Query: 1164 NTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            NTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP +  P+  G+
Sbjct: 1198 NTFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMDIPIKPGQ 1241



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC + Q  CPGH GHI+L   VYNP    L+  LL   C  CH  +    E E  + +
Sbjct: 66  CGTCLKMQD-CPGHMGHIELGSLVYNPFFIKLVQRLLCIFCLHCHKLQMRDHESEIIMLQ 124

Query: 61  LELIIKGDIIAAKSLDL 77
           L LI  G II A+ L+L
Sbjct: 125 LRLIDAGYIIEAQELEL 141


>gi|428185541|gb|EKX54393.1| hypothetical protein GUITHDRAFT_160655 [Guillardia theta CCMP2712]
          Length = 1521

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 315/787 (40%), Positives = 445/787 (56%), Gaps = 110/787 (13%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDN------ 333
            ++FFL  +LV P +FR P   G+   EHP  V L  ++  N  +     +   N      
Sbjct: 381  NMFFLQTLLVAPNRFRPPIHLGEQQFEHPLNVCLKSIMVENEQILELLDSNNGNKTSSSL 440

Query: 334  -AKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACR 392
             ++V++ +W  +Q  VN + D   A   ++   G+ Q LE+KEGL R  +MGKRVN+ACR
Sbjct: 441  DSEVLLRKWSRMQNFVNQMIDSTKAEKAQEGVKGVRQELERKEGLMRMNMMGKRVNFACR 500

Query: 393  SVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLS 452
            SVISPDP++   ++GIP  FA RL++PE V  +NV +LR +++NG  + PGA + +D+  
Sbjct: 501  SVISPDPFMTTGQVGIPEVFAKRLSWPEPVNQYNVKRLRQAVLNGPHVWPGANYVIDE-- 558

Query: 453  TMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLH 512
                   +  +I + +K    R A+ +  +  D   +   V RHL DGD VLVNRQPTLH
Sbjct: 559  -------RGNKIDLSKKQAQFRTAMAKQLEKKDARGQCWKVGRHLNDGDYVLVNRQPTLH 611

Query: 513  KPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQ 572
            K S+MAH V+V +G++ +RMHYANC +YNADFDGDE+NVHFPQD+  RAEA  IV  + Q
Sbjct: 612  KASLMAHQVKVNQGQRVIRMHYANCKSYNADFDGDEINVHFPQDQFGRAEAACIVKNDLQ 671

Query: 573  YVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQR 632
            Y+ P++G P+R LIQDH+++   + + +   +++E+ +L++   +  S L S  G P   
Sbjct: 672  YIVPTDGSPIRGLIQDHVIAGVQICQLNRMFSQEEYHELVF---LMLSNLTSELGLPN-- 726

Query: 633  VLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 692
                    E+L + P + KP   W+GKQ+IT +L ++    PP  +E   K+  + +   
Sbjct: 727  -------NEILTVPPFLLKPVRRWSGKQLITTILVNLLHDVPPINLESPCKVKGNMY--- 776

Query: 693  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL 752
                                          K+   EGK                     L
Sbjct: 777  ------------------------------KQHTHEGK---------------------L 785

Query: 753  LIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH-GFTC 809
            +I  N+L+ GV+DK     + YGLVH V E +G+  AG LL+ L RLFT F Q H  FTC
Sbjct: 786  VIRGNELLTGVLDKNHIGASAYGLVHAVFEAHGAEKAGLLLTILGRLFTHFQQTHRAFTC 845

Query: 810  GVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAM----- 864
            GV+DL++ ++ + +R   L  +             L+  A+   I  + +  KA      
Sbjct: 846  GVEDLMVTEEGDAKRAQVLDTA---------NWRTLDSSAKFAEINFEDDCSKATGKELE 896

Query: 865  --RGGGDAAVAY---------FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
              R    AA+A+          + +  SQ     +S VI+ +L  G L P  +N   +MT
Sbjct: 897  RRRRAVHAALAHLLFEEKGRKLNDQRISQALATVTSGVIDAILPGGQLIPFPENNFEMMT 956

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             +GAKGSKVN  QI   LGQQ+LEG+RVP M SGKTLP F P +   RAGGF+ DRFLTG
Sbjct: 957  ATGAKGSKVNMSQICCLLGQQQLEGQRVPVMASGKTLPCFQPLETDARAGGFVGDRFLTG 1016

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            +RPQEY+FHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE L ++YD +VRD DG ++QF 
Sbjct: 1017 IRPQEYFFHCMAGREGLVDTAVKTSRSGYLQRCLMKHLESLTVAYDRTVRDNDGGVIQFL 1076

Query: 1034 YGEDGVD 1040
            YGEDG+D
Sbjct: 1077 YGEDGID 1083



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TC Q    CPGH+GHIDL +P ++PLLFN LY LL+  CF C+  + +  +V      
Sbjct: 66  CETCSQSYDDCPGHYGHIDLSLPTFHPLLFNELYKLLRCCCFQCNSLRMNEEQVAFFTCV 125

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
           L  I +G +  A      L SESS   DS    +   +++         ++ K +  T  
Sbjct: 126 LSKIREGKLAEASDF---LLSESSLVVDSFNPMELDHNIIKLAKKEIQCKDFKFESKTQH 182

Query: 121 QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMP 164
           Q     LA   F      KC +C A +  + K   G+I +   P
Sbjct: 183 QQELWNLACSMFTSAIPKKCAHCSAASSTLKKD--GYIRILKKP 224


>gi|195486012|ref|XP_002091328.1| GE12306 [Drosophila yakuba]
 gi|194177429|gb|EDW91040.1| GE12306 [Drosophila yakuba]
          Length = 1642

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 336/864 (38%), Positives = 492/864 (56%), Gaps = 119/864 (13%)

Query: 223  GSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI--------SDMQQQGFG 274
            G+GA  SG  + K +F+      + +  + +++ N  +L   +        +D+ Q   G
Sbjct: 238  GTGAETSG--QNKVIFA-----DECRRYLRQIYANYPDLLKLLVPVLGLSNTDLTQ---G 287

Query: 275  KKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQAN-------IYLANAY 327
             ++   +FF+  + V P + R  +  GD +  +PQT +   +++ N        Y+    
Sbjct: 288  DRSPVDLFFMDTIPVTPPRARPLNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQ 347

Query: 328  VNQPDNAKV-------------IVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKK 374
                D AK              + A W+ LQ SV+VL D  N + +     G+ Q++EKK
Sbjct: 348  EKLTDEAKAAYQTLKGDTAHEKLYAAWLALQMSVDVLLD-VNMSREMKSGEGLKQIIEKK 406

Query: 375  EGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSI 434
             GL R  +MGKRVNYA R+VI+PDP + V+EIGIP  FA +L+YP  VT WNV +LR  +
Sbjct: 407  SGLIRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMV 466

Query: 435  INGAEIHPGATHYLDK--LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-K 491
            +NG ++HPGA +  DK   +T     N   R S+ + L +             N  +G K
Sbjct: 467  MNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLS-------------NPKDGVK 513

Query: 492  MVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNV 551
            +V+RH+ +GDV+L+NRQP+LHKPSIM H  R+L GEKT R+HY+NC  YNADFDGDEMN 
Sbjct: 514  IVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNA 573

Query: 552  HFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL 611
            H+PQ EV+RAEAYN+VN  + Y+ P +G PL  LIQDH++S   L+ +  F NR+++ QL
Sbjct: 574  HYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQL 633

Query: 612  LYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITR 671
            +Y                     +S+ ++++  L P I KP  LW+GKQV++ ++ +I  
Sbjct: 634  VYQG-------------------LSQHKKDIKLLPPTILKPAMLWSGKQVLSTIIINI-- 672

Query: 672  GRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKP 731
                        +P+ +   R N D             +K    + + S  +  +    P
Sbjct: 673  ------------IPEGY--ERINLD-----------SFAKIAGKNWNASRPRPSICGTNP 707

Query: 732  GEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGT 789
                  E N     ELSE ++ I   +L+ GV+DK Q+    +GL+H + ELYG + +  
Sbjct: 708  ------EGN-----ELSESQVQIRNGELLVGVLDKQQYGATTFGLIHCMYELYGGDVSTQ 756

Query: 790  LLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGA 849
            LL+A +++FT FLQ+ GFT GV D+L+  + +R+R+  +     +G      ALELED  
Sbjct: 757  LLTAFTKVFTFFLQLEGFTLGVKDILVTGEADRKRRKIIRECRNVGNSAVSAALELEDEP 816

Query: 850  EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWI 909
              D  +L  ++E A        V   D K  S L+ +T + + +  L  GL+     N +
Sbjct: 817  AHD--ELVEKMEAAYVKDSKFRV-LLDRKYKSLLDGYT-NDINSTCLPGGLITKFPSNNL 872

Query: 910  SLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDR 969
             LM  SGAKGS VN  QIS  LGQ ELEGKR P M+SGK+LPSF  ++ +P++GGFI  R
Sbjct: 873  QLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGFIDGR 932

Query: 970  FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSI 1029
            F+TG++PQ+++FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE L + YD +VRD+D S+
Sbjct: 933  FMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNSV 992

Query: 1030 VQFCYGEDGVDVHQTSFIS-KFDA 1052
            VQF YGEDG+D+ ++ F + KF A
Sbjct: 993  VQFLYGEDGLDILKSKFFNDKFCA 1016



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 67/83 (80%)

Query: 1124 KQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRL 1183
            K+    +++ K + SLA PGEPVGL+A+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL
Sbjct: 1156 KETIADIMRVKTIKSLASPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRL 1215

Query: 1184 QEILTIASKDIKTPVITCPLLVG 1206
            +EIL +AS +IKTP +  P+  G
Sbjct: 1216 REILMLASSNIKTPSMDIPIKPG 1238



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC + Q  CPGH GHI+L  PVYNP    ++  LL   C  C+  +    E E  + +
Sbjct: 66  CGTCLKLQD-CPGHMGHIELGTPVYNPFFIKIVQRLLCIFCLHCYKLQMKDHECEIIMLQ 124

Query: 61  LELIIKGDIIAAKSLDL 77
           L LI  G II A+ L+L
Sbjct: 125 LRLIDAGYIIEAQELEL 141


>gi|195381961|ref|XP_002049701.1| GJ20610 [Drosophila virilis]
 gi|194144498|gb|EDW60894.1| GJ20610 [Drosophila virilis]
          Length = 1648

 Score =  561 bits (1445), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 339/860 (39%), Positives = 489/860 (56%), Gaps = 113/860 (13%)

Query: 225  GAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSF---ISDMQQQG--FGKKAGH 279
            G VP    + K +F+      + +  + K++EN  +L      + +M  +    G  +  
Sbjct: 239  GDVPENSGQNKVIFA-----DECRRYLRKIYENYPQLLKLLVPVLNMNNEASVTGDCSPV 293

Query: 280  SIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL---------------- 323
             IFF+  + V P + R  +   D +  +PQT +   +++ N  L                
Sbjct: 294  DIFFMDTIPVTPPRARPMNVINDMMKGNPQTDIYVNIIENNHVLNVVLKFMKGQQEKLSE 353

Query: 324  --ANAYVNQ--PDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFR 379
                AY N    ++ + +   W+ LQ SV+VL D  N +     A G+ Q+LEKKEGL R
Sbjct: 354  QAKAAYQNMRGANSHEKLYNAWLALQSSVDVLLD-VNMSRDIKSAEGLKQVLEKKEGLIR 412

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
            + +MGKRVNYA R+VI+PDP + V+EIGIP  FA +L+YP  VT WNV++LR  ++NG E
Sbjct: 413  KHMMGKRVNYAARTVITPDPNIDVDEIGIPDIFARKLSYPVPVTEWNVIELRKMVMNGPE 472

Query: 440  IHPGATHYLDK--LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-KMVYRH 496
            +HPGA +  D   L+T     N   R S+ + L +             N  +G K+V+RH
Sbjct: 473  VHPGANYIQDSKGLTTFIPADNAAKRASMAKLLLS-------------NPKDGVKIVHRH 519

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            + +GDV+L+NRQP+LHKPSIMAH  R+L GEKT R+HY+NC  YNADFDGDEMN H+PQ 
Sbjct: 520  VLNGDVLLLNRQPSLHKPSIMAHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQS 579

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            EV+R+EAYN+VN  + Y+ P +G PL  LIQD ++S   L+ +  F NR+++ QL++   
Sbjct: 580  EVARSEAYNLVNVASNYLVPKDGTPLGGLIQDQVISGVKLSIRGRFFNREDYQQLVF--- 636

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI-TAVLNHITRGRPP 675
                GL    G           + ++LP  PAI KP  LW+GKQV+ T ++N I  G   
Sbjct: 637  ---QGLSHLKG-----------DVKLLP--PAIQKPAMLWSGKQVLSTIIINLIPDGYEH 680

Query: 676  FVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEK 735
              ++   K+        +N  K        +  L  +N +                    
Sbjct: 681  INLDSFAKIG----GKNWNVAKP-------RTPLCGSNPL-------------------- 709

Query: 736  EAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSA 793
                    E+ELSE ++ I K +L+ GV+DK Q+    +GL+H + ELYG + +  LL+A
Sbjct: 710  --------EQELSESQVQIRKGELLVGVLDKQQYGATTFGLIHCMYELYGGDVSTRLLTA 761

Query: 794  LSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
             +++FT FLQ+ GFT GV D+L+  + +R R+  +    ++G      ALELED   + P
Sbjct: 762  FTKVFTFFLQLEGFTLGVKDILVTDEADRRRRKIIRECRDVGNSAVAAALELED---VPP 818

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
              + +E  +A            D K  S L+ +T + +    L  GL+     N + LM 
Sbjct: 819  HDVLAEQMEAAYVKDSKFRVLLDRKYKSLLDGYT-NDINKTCLPGGLITKFPSNNLQLMV 877

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEGKR P M+SGK+LPSF  ++ +P++GGFI  RF+TG
Sbjct: 878  LSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGFIDGRFMTG 937

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            ++PQ+++FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE L + YD +VRD+D S+VQF 
Sbjct: 938  IQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFL 997

Query: 1034 YGEDGVDVHQTSFIS-KFDA 1052
            YGEDG+D+ ++ F + KF A
Sbjct: 998  YGEDGLDILKSKFFNGKFCA 1017



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 75/104 (72%), Gaps = 1/104 (0%)

Query: 1105 ALKDNAEKFADKF-LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTL 1163
            A+ +   +  D + L +   KQ    ++  K + +LA PGEPVGL+A+QS+GEPSTQMTL
Sbjct: 1137 AVSERTRQLIDDYALKHPSQKQIIADIMHMKSIKALASPGEPVGLIAAQSIGEPSTQMTL 1196

Query: 1164 NTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            NTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP +  P+  G+
Sbjct: 1197 NTFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMDIPIKPGQ 1240



 Score = 60.5 bits (145), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC + Q  CPGH GHI+L   VYNP    L+  LL   C  C+  +    E E  + +
Sbjct: 66  CGTCLKMQD-CPGHMGHIELGSLVYNPFFIKLVQRLLCIFCLHCYKLQMKDHESEIVMLQ 124

Query: 61  LELIIKGDIIAAKSLDL 77
           L LI  G II A+ L+L
Sbjct: 125 LRLIDAGYIIEAQELEL 141


>gi|194883048|ref|XP_001975616.1| GG22417 [Drosophila erecta]
 gi|190658803|gb|EDV56016.1| GG22417 [Drosophila erecta]
          Length = 1642

 Score =  559 bits (1441), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 328/816 (40%), Positives = 470/816 (57%), Gaps = 110/816 (13%)

Query: 266  SDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQAN----- 320
            +D+ Q   G ++   +FF+  + V P + R  +  GD +  +PQT +   +++ N     
Sbjct: 282  TDLTQ---GDRSPVDLFFMDTIPVTPPRARPLNMVGDMLKGNPQTDIYINIIENNHVLNV 338

Query: 321  --IYLANAYVNQPDNAKV-------------IVARWMNLQQSVNVLFDGKNAAGQRDMAS 365
               Y+        D AK              + A W+ LQ SV+VL D  N + +     
Sbjct: 339  VLKYMKGGQEKLTDEAKAAYQTLKGDTAHEKLYAAWLALQMSVDVLLD-VNMSREMKSGE 397

Query: 366  GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPW 425
            G+ Q++EKK GL R  +MGKRVNYA R+VI+PDP + V+EIGIP  FA +L+YP  VT W
Sbjct: 398  GLKQIIEKKSGLIRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEW 457

Query: 426  NVVKLRDSIINGAEIHPGATHYLDK--LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKD 483
            NV +LR  ++NG ++HPGA +  DK   +T     N   R S+ + L +           
Sbjct: 458  NVTELRKMVMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLS----------- 506

Query: 484  SDNEFEG-KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNA 542
              N  +G K+V+RH+ +GDV+L+NRQP+LHKPSIM H  R+L GEKT R+HY+NC  YNA
Sbjct: 507  --NPKDGVKIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNA 564

Query: 543  DFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTF 602
            DFDGDEMN H+PQ EV+RAEAYN+VN  + Y+ P +G PL  LIQDH++S   L+ +  F
Sbjct: 565  DFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRF 624

Query: 603  LNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI 662
             NR+++ QL++                     +S+ ++ +  L P I KP  LW+GKQV+
Sbjct: 625  FNREDYQQLVFQG-------------------LSQHKKNIKLLPPTILKPAMLWSGKQVL 665

Query: 663  TAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGK 722
            + ++ +I              +P+ +   R N D             +K        +GK
Sbjct: 666  STIITNI--------------IPEGY--ERINLD-----------SFAKI-------AGK 691

Query: 723  KKEVVEGKP---GEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHT 777
               V   +P   G   E         ELSE ++ I   +L+ GV+DK Q+    +GL+H 
Sbjct: 692  NWNVSRPRPPICGTNPEGN-------ELSESQVHIRNGELLVGVLDKQQYGATTFGLIHC 744

Query: 778  VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKR 837
            + ELYG + +  LL+A +++FT FLQ+ GFT GV D+L+  + +R+R+  +     +G  
Sbjct: 745  MYELYGGDVSTRLLTAFTKVFTFFLQLEGFTLGVKDILVTGEADRKRRKIIRECRNVGNS 804

Query: 838  VHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLS 897
                ALELED    D  +L  ++E A        V   D K  S L+ +T + + +  L 
Sbjct: 805  AVSAALELEDEPPHD--ELVEKMEAAYVKDSKFRV-LLDRKYKSLLDGYT-NDINSTCLP 860

Query: 898  EGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWD 957
             GL+     N + LM  SGAKGS VN  QIS  LGQ ELEGKR P M+SGK+LPSF  ++
Sbjct: 861  RGLITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFE 920

Query: 958  WAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIS 1017
             +P++GGFI  RF+TG++PQ+++FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE L + 
Sbjct: 921  TSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVH 980

Query: 1018 YDYSVRDADGSIVQFCYGEDGVDVHQTSFIS-KFDA 1052
            YD +VRD+D S+VQF YGEDG+D+ ++ F + KF A
Sbjct: 981  YDLTVRDSDNSVVQFLYGEDGLDILKSKFFNDKFCA 1016



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/84 (64%), Positives = 68/84 (80%)

Query: 1124 KQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRL 1183
            K+    +++ K + SLA PGEPVGL+A+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL
Sbjct: 1156 KETIADIMRVKTIKSLASPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRL 1215

Query: 1184 QEILTIASKDIKTPVITCPLLVGK 1207
            +EIL +AS +IKTP +  P+  G+
Sbjct: 1216 REILMLASSNIKTPSMDIPIKPGQ 1239



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC + Q  CPGH GHI+L  PVYNP     +  LL   C  C+  +    E E  + +
Sbjct: 66  CGTCLKLQD-CPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQ 124

Query: 61  LELIIKGDIIAAKSLDL 77
           L LI  G II A+ L+L
Sbjct: 125 LRLIDAGYIIEAQELEL 141


>gi|198430691|ref|XP_002124424.1| PREDICTED: similar to RNA polymerase I large subunit [Ciona
            intestinalis]
          Length = 1547

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 342/874 (39%), Positives = 469/874 (53%), Gaps = 130/874 (14%)

Query: 242  LLPSDVKDIIEKLWENEFELCS--FISDMQQQGFGKK------------AGHSIFFLGVV 287
            + PS+VKD I  LW NE E+ S  F++     G   K            +   + FL  +
Sbjct: 58   MTPSNVKDHISALWNNEKEILSRIFVAMGDAAGISDKEKNDGDFTIQPCSAVDVLFLSAL 117

Query: 288  LVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAK------------ 335
             VP  +FR          E PQT   SKVL   + L  A + +   A             
Sbjct: 118  PVPASRFRPIGCVNGRQFESPQTTAYSKVLMDCVIL-RALIKRLSEANKENIEDEMEEEE 176

Query: 336  -------------------VIVA------------RWMNLQQSVNVLFDGK--NAAGQRD 362
                               VI +             W+ LQQ VN L D          D
Sbjct: 177  EDVTKMGKLKLKMSSKKMDVISSIPGKTLPQKLENAWLRLQQHVNSLLDSDLDRLTSADD 236

Query: 363  MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERV 422
               GI QLLEKK+GLFR+ +MGKRVNYA RSVISPDPY+A NEIG+P  FA++LTYP  V
Sbjct: 237  KTPGIKQLLEKKDGLFRKHMMGKRVNYAARSVISPDPYIATNEIGLPMVFAVKLTYPCPV 296

Query: 423  TPWNVVKLRDSIINGAEIHPGATHYL-DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPG 481
            TPWN   LR ++ING   HPGATH + D  + +    ++  R ++ ++L     A    G
Sbjct: 297  TPWNTKMLRQAVINGPMKHPGATHVVADGRTVLLSATDQSQREAVAKQL----TATDTHG 352

Query: 482  KDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYN 541
               +   + K+V RH+Q GDV+L+NRQPTLHK SIMAH VRVL GEKTLR+HYANC +YN
Sbjct: 353  SKHEVFNKPKLVLRHIQTGDVMLLNRQPTLHKGSIMAHRVRVLPGEKTLRLHYANCKSYN 412

Query: 542  ADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDT 601
            ADFDGDEMN HFPQ E+ R+EAY +++ + QY+   +G PL  LIQDH+V+   +  +  
Sbjct: 413  ADFDGDEMNAHFPQSELCRSEAYQLMSTDAQYLSGKDGKPLSCLIQDHMVAGVNMCIRGR 472

Query: 602  FLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQV 661
            F  ++E+ QL Y          +    P +  LI           PA+ KP+ LW+GKQ+
Sbjct: 473  FFTQEEYQQLTYE---------ALMHLPYKVKLIK----------PALIKPKKLWSGKQI 513

Query: 662  ITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSG 721
             + +  +IT    P +   G                        K K+   N   +    
Sbjct: 514  FSTIFLNITPNGLPLINLTG------------------------KSKIGPKNWQKEPARN 549

Query: 722  KKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQ 779
             K   + G                ++ E +++I   +L+ G++DKA +   ++GLVH + 
Sbjct: 550  AKVAPIHG---------------VDMCESQVIIRNGELLCGILDKAHYGATEHGLVHAMY 594

Query: 780  ELYGSNTAGTLLSALSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRV 838
            E+Y    +G LL+ L+RLFT FLQ + GFT GV+D+L+     + R + +  +++ G +V
Sbjct: 595  EIYSGEISGRLLTCLARLFTAFLQRYRGFTLGVEDILVRDWANKGRTDVIQDTKDNGMQV 654

Query: 839  HLEALELEDGAE---IDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL 895
              + L ++   E    D +       K +    +  +A  D  M +  N   +  +    
Sbjct: 655  VAKTLNVKKKNEEDITDALWDAHVATKIIVNKTEDKLAAVDHAMKAVCNG-ANDQIAKWC 713

Query: 896  LSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHP 955
               GLLK   +N + LM  SGAKG  VN  QIS  LGQ ELEG+R P M SG++ PSF P
Sbjct: 714  TGGGLLKTFPQNNLQLMVISGAKGGAVNCMQISCLLGQIELEGRRPPLMPSGRSAPSFMP 773

Query: 956  WDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK 1015
            +D   RAGGFI  RFLTG+RPQEY++HCMAGREGLVDTAVKTSRSGYLQRCLIK+LE L 
Sbjct: 774  YDTTIRAGGFISQRFLTGIRPQEYFYHCMAGREGLVDTAVKTSRSGYLQRCLIKHLEGLL 833

Query: 1016 ISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISK 1049
            +SYD +VRD+DG +VQF YGEDG+D+++TS++S+
Sbjct: 834  LSYDMTVRDSDGGVVQFLYGEDGIDINKTSYLSQ 867



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/75 (73%), Positives = 65/75 (86%)

Query: 1130 LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTI 1189
            L+K ++  SL QPGE VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +
Sbjct: 1024 LLKMRYQRSLCQPGESVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMV 1083

Query: 1190 ASKDIKTPVITCPLL 1204
            AS+ IKTP IT P++
Sbjct: 1084 ASRHIKTPQITVPVM 1098


>gi|340376989|ref|XP_003387013.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Amphimedon
            queenslandica]
          Length = 1309

 Score =  557 bits (1435), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 310/693 (44%), Positives = 428/693 (61%), Gaps = 74/693 (10%)

Query: 361  RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE 420
            +D+ SGI Q LEKK+GLFR  +MGKRVNYA RSVISPDP + ++EIGIP  FA RLTYPE
Sbjct: 10   KDVPSGIKQTLEKKDGLFRLHMMGKRVNYAARSVISPDPNINMDEIGIPMVFATRLTYPE 69

Query: 421  RVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP 480
             VT WN  +L  ++ING  +HPGATH  ++  ++ L  N++ R +I + L       +  
Sbjct: 70   PVTFWNWSELSKAVINGPHVHPGATHVQNEDGSLILLRNERQRKAIAKTL-------LAK 122

Query: 481  GKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTY 540
             K S  +   K VYRHL++ D++L+NRQP+LHKPSIMAH  RVL GEKTLR+HYANC TY
Sbjct: 123  EKLSSAKVPKK-VYRHLKNSDILLLNRQPSLHKPSIMAHKARVLSGEKTLRLHYANCKTY 181

Query: 541  NADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKD 600
            NADFDG EMN HFPQ E++R+EAY+IV+  NQY+ P +G PL  LIQDH+VS  LLT +D
Sbjct: 182  NADFDGGEMNAHFPQGELARSEAYSIVSTQNQYLVPKDGTPLSGLIQDHVVSGVLLTLRD 241

Query: 601  TFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQ 660
             F ++ ++  LL  +      L  FT           S  +VLP    I KP+ LWTGKQ
Sbjct: 242  RFFDKGDYQNLLMVA------LPDFT-----------SPFKVLPPATCICKPKELWTGKQ 284

Query: 661  VITA-VLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
            VI++ +LN I  G+                               DK  L    K+   +
Sbjct: 285  VISSLLLNLIPAGQ-------------------------------DKLNLISKTKISPKE 313

Query: 720  SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHT 777
             G+            K +E +K  +  ++E +++  +  L+ GV+DK+QF  + +G VH+
Sbjct: 314  WGRYC---------NKSSESSKYTDNIMTESEVIFREGQLLSGVLDKSQFGASQFGFVHS 364

Query: 778  VQELYGSNTAGTLLSALSRLFTVFLQM-HGFTCGVDDLLILKDKERERKNHLHGSEEIGK 836
              ELYG      LLSAL R+FT FL++ HGF+ GV+D+L+    ++ER   +    + G 
Sbjct: 365  CYELYGGTMCNYLLSALGRIFTGFLKLYHGFSLGVEDILVKPMADKERFKIIAEGRDCGL 424

Query: 837  RVHLEALELEDGAEIDPIKLK-SEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL 895
                +A  +++  + D +  K +++   +   G   + +F  K T Q+N   + + I   
Sbjct: 425  EAAADAFVVKNVKDKDLVIEKYTDVHHTIGRDGLKVLDFFMKKKTDQINNKVNVACI--- 481

Query: 896  LSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHP 955
               GL KP   N + LM  +GAKGS VN  QIS  LGQ ELEG+R P M+SG++LP+F P
Sbjct: 482  -PAGLHKPFPSNSLQLMVQAGAKGSTVNCMQISCLLGQIELEGRRPPIMLSGRSLPTFLP 540

Query: 956  WDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK 1015
            +D  PR+GGF+  RFLTG+RP E++ H MAGREGLVDTAVKTSRSGYLQRCL+K+LE + 
Sbjct: 541  YDTTPRSGGFVDGRFLTGVRPPEFFLHAMAGREGLVDTAVKTSRSGYLQRCLVKHLEGIT 600

Query: 1016 ISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS 1048
            ++YD +VRD+DGS++QF YGEDG+D+ +T F+S
Sbjct: 601  VNYDLTVRDSDGSVLQFLYGEDGLDISKTRFLS 633


>gi|431899744|gb|ELK07695.1| DNA-directed RNA polymerase I subunit RPA1 [Pteropus alecto]
          Length = 1706

 Score =  556 bits (1434), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 311/724 (42%), Positives = 426/724 (58%), Gaps = 81/724 (11%)

Query: 341  WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
            W+ LQ  VN++FD +      +   GI Q LEKK+GLFR+ +MGKRV+YA RSVI PD Y
Sbjct: 372  WIRLQSHVNIVFDSEMDKLMMEKYPGIRQTLEKKDGLFRKHMMGKRVDYAARSVICPDLY 431

Query: 401  LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL--DKLSTMRLPP 458
            +  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING  +HPGA+  +  D   T     
Sbjct: 432  INTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAV 491

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
            +   R ++ ++L T      +P          K+V RH+++GD++L+NRQPTLHKPSI A
Sbjct: 492  DLTQREAVAKQLLTPATGTPKPQGT-------KIVCRHVKNGDILLLNRQPTLHKPSIQA 544

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ E+ RAEA  +   + QY+ P +
Sbjct: 545  HHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEASVLACTDQQYLVPKD 604

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            G PL  LIQDH+VS A +T +  F NR+++ QL+Y       G   F             
Sbjct: 605  GQPLAGLIQDHMVSGANMTTRGCFFNREQYMQLVYRGLTDKVGRVKF------------- 651

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
                    PAI KP PLWTGKQV++ +L +I              +P++      +    
Sbjct: 652  ------FPPAIRKPFPLWTGKQVVSTLLINI--------------IPEEHIPLNLSG--- 688

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKK--KEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
                   K K+          SGK   KE     PG    +         + E +++I +
Sbjct: 689  -------KAKI----------SGKAWVKESPRPVPGFNPNS---------MCESQVIIRE 722

Query: 757  NDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH-GFTCGVDD 813
             +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L+RLFT +LQ++ GFT G++D
Sbjct: 723  GELLCGVLDKAHYGSSAYGLVHCCYEIYGGQTSGKVLTCLARLFTAYLQLYRGFTLGMED 782

Query: 814  LLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVA 873
            +L+    + +R   +  S   G R    AL L + A  D ++ K   + A  G       
Sbjct: 783  ILVTPKADGKRHRIIGESTHCGPRAVRAALNLPETASCDEVRGK--WQDAHLGKDQRDFN 840

Query: 874  YFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQ 933
              D+K   ++N H S+ +    +  GL +   +N + +M  SGAKGS VN  QIS  LGQ
Sbjct: 841  MIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQ 899

Query: 934  QELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDT 993
             ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG++P E++FHCMAGREGLVDT
Sbjct: 900  IELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDT 959

Query: 994  AVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS--KFD 1051
            AVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF YGEDG+D+ +T F+   +F 
Sbjct: 960  AVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFP 1019

Query: 1052 ALAA 1055
             LA+
Sbjct: 1020 FLAS 1023



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/95 (61%), Positives = 74/95 (77%), Gaps = 3/95 (3%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            AEK  +K   +E++      L++ K+  SL  PGE VGLLA+QS+GEPSTQMTLNTFH A
Sbjct: 1159 AEKSYEK---SELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFA 1215

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            GRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L
Sbjct: 1216 GRGEMNVTLGIPRLREILMVASANIKTPMMSVPVL 1250



 Score = 44.7 bits (104), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   + +
Sbjct: 98  CSTCVQDFSNCAGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 157

Query: 61  LELIIKGDIIAAKSLDLDLP---SESSNP 86
           L ++  G + A   L+  L     E+S+P
Sbjct: 158 LRVLEVGALQAVYELERILNRFLEENSDP 186


>gi|45181583|gb|AAS55442.1| RNA polymerase I largest subunit [Pinus nigra]
          Length = 547

 Score =  556 bits (1433), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 313/611 (51%), Positives = 401/611 (65%), Gaps = 72/611 (11%)

Query: 556  DEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSS 615
            DE++RAEAYNIVNAN QY+ P++GDP+R LIQDHIVSAALLTK+DTFL ++E+  L+Y++
Sbjct: 1    DEIARAEAYNIVNANEQYIVPTSGDPIRGLIQDHIVSAALLTKRDTFLTKEEYQNLVYTA 60

Query: 616  GVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPP 675
             VS++      GK   +V + + E   L L P I KPEPLWTGKQVIT VL++IT+GRPP
Sbjct: 61   CVSNAAPIFQRGKSCPKVGVVKDEHAFLSLPPTILKPEPLWTGKQVITTVLHYITKGRPP 120

Query: 676  FVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEK 735
            F V+                               K+ ++  D  GK             
Sbjct: 121  FTVK-------------------------------KSGRVPGDYWGKSS----------- 138

Query: 736  EAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALS 795
                         E ++LI  N+L+ GVIDKAQF  YG+VH VQELYG++ AG LLS  S
Sbjct: 139  ------------GELEVLIQNNELICGVIDKAQFGKYGMVHIVQELYGADAAGHLLSVFS 186

Query: 796  RLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIK 855
            RLFT +LQMHGFTCGV DLL++   E +RK  L  SE++G ++HL+ L   D A+ID + 
Sbjct: 187  RLFTGYLQMHGFTCGVVDLLLVPQAEDDRKKKLEKSEKLGDKIHLQFLG-GDRADIDVMC 245

Query: 856  LKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTS 915
            ++ EIEK +R  G+ A +  D  M+S LN+ TS  V N L  +GLLKP   N +SLMT +
Sbjct: 246  IEEEIEKVLRTKGEVASSRLDRLMSSALNRITSE-VNNSLFPKGLLKPFPGNCLSLMTMT 304

Query: 916  GAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLR 975
            GAKG  VNF QISS LGQQELEGKRVPRMVSGKTLP F PWD   RAGGFI DRFLTGLR
Sbjct: 305  GAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDSRSRAGGFISDRFLTGLR 364

Query: 976  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYG 1035
            PQEYYFHCMAGR+GLVDTA+KTSRSGYLQRCLIKNLECLK+ YDY+VRD+DGS++QF YG
Sbjct: 365  PQEYYFHCMAGRDGLVDTAIKTSRSGYLQRCLIKNLECLKVYYDYTVRDSDGSVIQFNYG 424

Query: 1036 EDGVDVHQTSFISKFDALAARER-GRGR-GRNKFCDKGSHTFVMGRNQEMIYKKCSGQLD 1093
            EDG+DV + S +++F+ LA  ++  R R G NK  + GS        Q    +K   +  
Sbjct: 425  EDGLDVMKISCLTEFEVLATNQKLVRQRLGTNKLDELGS--------QHSKKEKFKEKSS 476

Query: 1094 ASNAYIMELPDALKDNAEKFA-----DKFLSNEMAKQD-FLKLVKHKFVLSLAQPGEPVG 1147
             + +Y  +LP+AL+   ++F      +K  S ++  Q+ FL ++  K+V SLAQPGE VG
Sbjct: 477  VAGSYAKDLPEALEKKVQEFIGGLSKEKRQSLKLKNQNKFLNMMGLKYVSSLAQPGEAVG 536

Query: 1148 LLASQSVGEPS 1158
            ++A QS+GEPS
Sbjct: 537  VIAGQSIGEPS 547


>gi|300121000|emb|CBK21382.2| unnamed protein product [Blastocystis hominis]
          Length = 1671

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 312/711 (43%), Positives = 423/711 (59%), Gaps = 80/711 (11%)

Query: 341  WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
            W+++Q++ N L D  ++ G    ++GI QLLE KEGLFR  +MGKRVN+A RSVI+PDPY
Sbjct: 287  WVDMQENYNGLVD--SSKGHSGQSAGIRQLLEHKEGLFRMNMMGKRVNFAARSVIAPDPY 344

Query: 401  LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK 460
            +  +E+G+P  FA  L YPE VT  NV  LR  +ING E +PGA  Y++      +    
Sbjct: 345  IDTDEVGVPLQFAKELCYPEPVTVNNVKLLRQLVINGREKYPGAC-YIENEGGWLVDLQY 403

Query: 461  KMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHV 520
            K R   G++   ++  +V   KDS      K V+R+L  GD++LVNRQPTLHK SIMA  
Sbjct: 404  KNR---GQREALAKTLLV---KDSSGGIRRKRVWRNLLQGDILLVNRQPTLHKASIMALR 457

Query: 521  VRVLKGEK-TLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNG 579
             R+LK ++ T+RMHY+NC+T+NADFDGDE+N+HFPQ E++R+EAYNIV+A  QY    +G
Sbjct: 458  ARILKSKRQTIRMHYSNCNTFNADFDGDEINLHFPQGELARSEAYNIVSAKYQYTSAKDG 517

Query: 580  DPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSE 639
             PLR LIQDH+ S  LLTK+DTFLNR E+ QL++++      +  F     +RV      
Sbjct: 518  SPLRGLIQDHVASGFLLTKRDTFLNRQEYDQLVFTA------ISGFDEPASERV------ 565

Query: 640  QEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQS 699
              V  L PAI KP  LWTGKQV++++L ++            G LPQ      FN   Q 
Sbjct: 566  --VRTLPPAILKPAVLWTGKQVVSSLLINLV-----------GDLPQ----MTFNGVAQV 608

Query: 700  DRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDL 759
            + K    G++                                  +  L E+ +L+ + +L
Sbjct: 609  NDKAWGSGQI--------------------------------PPQSPLGEQLVLVEEGEL 636

Query: 760  VRGVIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLIL 817
            +RGV+DK+ F   +Y LVH + ELYG +     LS   R+ T + Q  GFTC ++DL++ 
Sbjct: 637  LRGVLDKSTFGAKNYSLVHAIHELYGVDLCSKFLSCFGRVVTSYFQKRGFTCSMEDLVLE 696

Query: 818  KDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDM 877
            K+ E +R+  +  + E      +  +E   G E  P      +E       D     F  
Sbjct: 697  KEAEDKRRALIDSALEKA----VSGMEQYMGLETTP---SMSLEARRAAVSDELRQRFIS 749

Query: 878  KMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELE 937
               + +    SS +    L  GL  P   N  S M  SGAKGS VN  Q+S  LGQQELE
Sbjct: 750  SRGASIVSQISSEIFKVCLPHGLRVPFPNNSFSCMIISGAKGSNVNQTQVSCALGQQELE 809

Query: 938  GKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKT 997
            G+RVP MV+GKTLPSF  +D  PRAGG++ DRFLTG+RPQEYYFHCMAGREGLVDTAVKT
Sbjct: 810  GRRVPMMVNGKTLPSFRAYDPMPRAGGWVSDRFLTGIRPQEYYFHCMAGREGLVDTAVKT 869

Query: 998  SRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS 1048
            SRSGYLQRC+IK+LE L + YDYSVR++DG+++Q  YG+DGVDV +  +++
Sbjct: 870  SRSGYLQRCIIKHLEDLTVQYDYSVRNSDGAVIQLLYGDDGVDVGKVKYLT 920



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 62/75 (82%)

Query: 1134 KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKD 1193
            K++ SLA+PG+ VG++A QS+GEP+TQMTLNTFHLAG G +NVTLGIPRL+EI+  A+K 
Sbjct: 1112 KYMRSLAEPGDSVGVIAGQSIGEPATQMTLNTFHLAGHGAVNVTLGIPRLREIIMQAAKS 1171

Query: 1194 IKTPVITCPLLVGKT 1208
            I TP++T PLL   T
Sbjct: 1172 IGTPMMTLPLLPSAT 1186



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 11/93 (11%)

Query: 242 LLPSDVKDIIEKLWENEFELCSF-----------ISDMQQQGFGKKAGHSIFFLGVVLVP 290
           L P +V+  +  L+ENE+ + +            I++ Q     +K G+ IFF+  +LVP
Sbjct: 114 LPPLEVELRMRMLYENEYRIANLVWYPQLTEEAAIANPQGHPELEKEGYRIFFVRTILVP 173

Query: 291 PIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL 323
           P +FR P        EHPQ V LS +L+ N  L
Sbjct: 174 PSRFRPPQHLHGEQYEHPQNVYLSNILRDNYNL 206


>gi|195150452|ref|XP_002016168.1| GL11448 [Drosophila persimilis]
 gi|194110015|gb|EDW32058.1| GL11448 [Drosophila persimilis]
          Length = 1647

 Score =  553 bits (1426), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 307/715 (42%), Positives = 435/715 (60%), Gaps = 82/715 (11%)

Query: 341  WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
            W++LQ SV+VL D  N + +   A G+ Q+LEKK+GL R+ +MGKRVNYA R+VI+PDP 
Sbjct: 374  WLSLQTSVDVLLD-VNMSREVQSAEGLKQVLEKKDGLIRKHMMGKRVNYAARTVITPDPN 432

Query: 401  LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDK--LSTMRLPP 458
            + V+EIGIP  FA +L+YP  VT WNV  LR  ++NG ++HPGA +  D    +T     
Sbjct: 433  IDVDEIGIPDIFARKLSYPIPVTEWNVTDLRKMVMNGPDVHPGANYIQDSNGFTTYIPAD 492

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-KMVYRHLQDGDVVLVNRQPTLHKPSIM 517
            N   R S+ + L +             N  +G K+V+RH+ +GD +L+NRQP+LHKPSIM
Sbjct: 493  NAAKRASMAKLLLS-------------NPKDGVKIVHRHVLNGDCLLLNRQPSLHKPSIM 539

Query: 518  AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
            AH  R+L+GEKT R+HY+NC  YNADFDGDEMN H+PQ EV+RAEAYN+VN  + Y+ P 
Sbjct: 540  AHKARILRGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPK 599

Query: 578  NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISR 637
            +G PL  LIQDH++S   L+ +  F NR+++ QL++       GL +  G          
Sbjct: 600  DGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQLVF------QGLSNLKG---------- 643

Query: 638  SEQEVLPLLPAIWKPEPLWTGKQVI-TAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
             + ++LP  PA+ KP  LW+GKQV+ T ++N I  G     ++   K+            
Sbjct: 644  -DVKLLP--PALIKPAVLWSGKQVLSTIIINLIPDGYELINLDSFAKI------------ 688

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
                                    GK   V   +P        +  +E ELSE ++ I +
Sbjct: 689  -----------------------GGKNWNVARPRPA----LHGSNPQEHELSESQVQIRR 721

Query: 757  NDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             +L+ GV+DK Q+    +GL+H + ELYG + +  LL+A +++FT FLQ+ GFT GV D+
Sbjct: 722  GELLVGVLDKQQYGATTFGLIHCMYELYGGDVSTRLLTAFTKVFTFFLQLEGFTLGVKDI 781

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
            L+  + +R+R+  +    ++G      ALEL+D    D  +L  ++E+A        V  
Sbjct: 782  LVTGEADRKRRQIIQECRDVGNSAVAAALELDDVPPHD--ELAEQMEEAYVKDPKFRV-L 838

Query: 875  FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
             D K  S L+  T + +    L  GL+     N + LM  SGAKGS VN  QIS  LGQ 
Sbjct: 839  LDRKYKSLLDGFT-NDINKTCLPGGLITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQI 897

Query: 935  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
            ELEGKR P M+SGK+LPSF  ++ +P++GGFI  RF+TG++PQ+++FHCMAGREGL+DTA
Sbjct: 898  ELEGKRPPLMISGKSLPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTA 957

Query: 995  VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISK 1049
            VKTSRSGYLQRCLIK+LE L + YD +VRD+D S+VQF YGEDG+D+ ++ F ++
Sbjct: 958  VKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFLYGEDGLDILKSKFFNE 1012



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC + Q  CPGH GHI+L   VYNP    L+  LL   C  C   +    E E  + +
Sbjct: 66  CGTCLKMQD-CPGHMGHIELGTLVYNPFFIKLVQRLLCIFCLHCFKLQMKDHECEIIMLQ 124

Query: 61  LELIIKGDIIAAKSLDL 77
           L LI  G II A+ L++
Sbjct: 125 LRLIDAGYIIEAQELEI 141


>gi|125808018|ref|XP_001360603.1| GA10089 [Drosophila pseudoobscura pseudoobscura]
 gi|54635775|gb|EAL25178.1| GA10089 [Drosophila pseudoobscura pseudoobscura]
          Length = 1647

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 306/715 (42%), Positives = 434/715 (60%), Gaps = 82/715 (11%)

Query: 341  WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
            W++LQ SV+VL D  N + +   A G+ Q+LEKK+GL R+ +MGKRVNYA R+VI+PDP 
Sbjct: 374  WLSLQTSVDVLLD-VNMSREVQSAEGLKQVLEKKDGLIRKHMMGKRVNYAARTVITPDPN 432

Query: 401  LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDK--LSTMRLPP 458
            + V+EIGIP  FA +L+YP  VT WNV  LR  ++NG ++HPGA +  D    +T     
Sbjct: 433  IDVDEIGIPDIFARKLSYPIPVTEWNVTDLRKMVMNGPDVHPGANYIQDSNGFTTYIPAD 492

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-KMVYRHLQDGDVVLVNRQPTLHKPSIM 517
            N   R S+ + L +             N  +G K+V+RH+ +GD +L+NRQP+LHKPSIM
Sbjct: 493  NAAKRASMAKLLLS-------------NPKDGVKIVHRHVLNGDCLLLNRQPSLHKPSIM 539

Query: 518  AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
            AH  R+L+GEKT R+HY+NC  YNADFDGDEMN H+PQ EV+RAEAYN+VN  + Y+ P 
Sbjct: 540  AHKARILRGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPK 599

Query: 578  NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISR 637
            +G PL  LIQDH++S   L+ +  F NR+++ QL++       GL +  G          
Sbjct: 600  DGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQLVF------QGLSNLKG---------- 643

Query: 638  SEQEVLPLLPAIWKPEPLWTGKQVI-TAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
             + ++LP  P + KP  LW+GKQV+ T ++N I  G     ++   K+            
Sbjct: 644  -DVKLLP--PTLIKPAMLWSGKQVLSTIIINLIPDGYELINLDSFAKI------------ 688

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
                                    GK   V   +P        +  +E ELSE ++ I +
Sbjct: 689  -----------------------GGKNWNVARPRPA----LHGSNPQEHELSESQVQIRR 721

Query: 757  NDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             +L+ GV+DK Q+    +GL+H + ELYG + +  LL+A +++FT FLQ+ GFT GV D+
Sbjct: 722  GELLVGVLDKQQYGATTFGLIHCMYELYGGDVSTRLLTAFTKVFTFFLQLEGFTLGVKDI 781

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
            L+  + +R+R+  +    ++G      ALEL+D    D  +L  ++E+A        V  
Sbjct: 782  LVTGEADRKRRQIIQECRDVGNSAVAAALELDDVPPHD--ELAEQMEEAYVKDPKFRV-L 838

Query: 875  FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
             D K  S L+  T + +    L  GL+     N + LM  SGAKGS VN  QIS  LGQ 
Sbjct: 839  LDRKYKSLLDGFT-NDINKTCLPGGLITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQI 897

Query: 935  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
            ELEGKR P M+SGK+LPSF  ++ +P++GGFI  RF+TG++PQ+++FHCMAGREGL+DTA
Sbjct: 898  ELEGKRPPLMISGKSLPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTA 957

Query: 995  VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISK 1049
            VKTSRSGYLQRCLIK+LE L + YD +VRD+D S+VQF YGEDG+D+ ++ F ++
Sbjct: 958  VKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFLYGEDGLDILKSKFFNE 1012



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC + Q  CPGH GHI+L   VYNP    L+  LL   C  C   +    E E  + +
Sbjct: 66  CGTCLKMQD-CPGHMGHIELGTLVYNPFFIKLVQRLLCIFCLHCFKLQMKDHECEIIMLQ 124

Query: 61  LELIIKGDIIAAKSLDL 77
           L LI  G II A+ L++
Sbjct: 125 LRLIDAGYIIEAQELEI 141


>gi|195334386|ref|XP_002033864.1| GM20204 [Drosophila sechellia]
 gi|194125834|gb|EDW47877.1| GM20204 [Drosophila sechellia]
          Length = 1585

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 322/803 (40%), Positives = 462/803 (57%), Gaps = 106/803 (13%)

Query: 274  GKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQAN-------IYLANA 326
            G ++   +FF+  + V P + R  +  GD +  +PQT +   +++ N        Y+   
Sbjct: 287  GDRSPVDLFFMDTLPVTPPRARPLNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGG 346

Query: 327  YVNQPDNAKV-------------IVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEK 373
                 + AK              + A W+ LQ SV+VL D  N + +     G+ Q++EK
Sbjct: 347  QEKLTEEAKAAYQTLKGETAHEKLYAAWLALQMSVDVLLD-VNMSREMKSGEGLKQIIEK 405

Query: 374  KEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDS 433
            K GL R  +MGKRVNYA R+VI+PDP + V+EIGIP  FA +L+YP  VT WNV +LR  
Sbjct: 406  KSGLIRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKM 465

Query: 434  IINGAEIHPGATHYLDK--LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG- 490
            ++NG ++HPGA +  DK   +T     N   R S+ + L +             N  +G 
Sbjct: 466  VMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLS-------------NPKDGI 512

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
            K+V+RH+ +GDV+L+NRQP+LHKPSIM H  R+L GEKT R+HY+NC  YNADFDGDEMN
Sbjct: 513  KIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMN 572

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
             H+PQ EV+RAEAYN+VN  + Y+ P +G PL  LIQDH++S   L+ +  F NR+++ Q
Sbjct: 573  AHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQ 632

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            L++                     +S+ ++++  L P I KP  LW+GKQ+++ ++ +I 
Sbjct: 633  LVFQG-------------------LSQLKKDIKLLPPTILKPAVLWSGKQILSTIIINII 673

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                          P+ +   R N D             +K        +GK   V   +
Sbjct: 674  --------------PEGY--ERINLD-----------SFAKI-------AGKNWNVSRPR 699

Query: 731  P---GEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSN 785
            P   G   E         ELSE ++ I   +L+ GV+DK Q+    YGL+H + ELYG +
Sbjct: 700  PAICGTNPEGN-------ELSESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGD 752

Query: 786  TAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALEL 845
             +  LL+A +++FT FLQ+ GFT GV D+L+    +R+R+  +     +G      ALEL
Sbjct: 753  VSTLLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALEL 812

Query: 846  EDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTG 905
            ED    D  +L  ++E A        V   D K  S L+ +T + + +  L  GL+    
Sbjct: 813  EDEPPHD--ELVEKMEAAYVKDSKFRV-LLDRKYKSVLDSYT-NDINSTCLPRGLITKFP 868

Query: 906  KNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGF 965
             N + LM  SGAKGS VN  QIS  LGQ ELEGKR P M+SGK+LPSF  ++ +P++GGF
Sbjct: 869  SNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGF 928

Query: 966  IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDA 1025
            I  RF+TG++PQ+++FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE L + YD +VRD+
Sbjct: 929  IDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDS 988

Query: 1026 DGSIVQFCYGEDGVDVHQTSFIS 1048
            D S+VQF YGEDG+D+ ++ F +
Sbjct: 989  DNSVVQFLYGEDGLDILKSKFFN 1011



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 46/57 (80%), Gaps = 1/57 (1%)

Query: 1124 KQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGI 1180
            K+    +++ K + SLA PGEPVGL+A+QS+GEPSTQMTLNTFH AGR ++NV+ G+
Sbjct: 1156 KETIADIMRVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGR-DVNVSTGL 1211



 Score = 63.2 bits (152), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 2/102 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC + Q  CPGH GHI+L  PVYNP     +  LL   C  C+  +    E E  + +
Sbjct: 66  CGTCLKLQD-CPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHEREIIMLQ 124

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTP 102
           L LI  G II A+ L+L   SE+      ++    +  MV P
Sbjct: 125 LRLIDAGYIIEAQELEL-FKSETVCQNTDNLVAIKNGDMVHP 165


>gi|170590678|ref|XP_001900098.1| RNA polymerase Rpb1, domain 2 family protein [Brugia malayi]
 gi|158592248|gb|EDP30848.1| RNA polymerase Rpb1, domain 2 family protein [Brugia malayi]
          Length = 1687

 Score =  550 bits (1418), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 377/1007 (37%), Positives = 517/1007 (51%), Gaps = 153/1007 (15%)

Query: 245  SDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSV 304
            ++V++    LW+N+  L   +  +      +     + F   VLVPP K+R         
Sbjct: 328  AEVREHFRILWQNDGPLLKKVFPVFDSEDDRHCPLDVLFCEAVLVPPTKYRPVRIFKGDK 387

Query: 305  MEHPQTVLLSKVLQAN-----IYLA------NAYVN--------QPDNAKVIVARWMNLQ 345
             E+PQ+V L K+L+A+     I LA       A +N        Q   AK+  A ++ LQ
Sbjct: 388  FENPQSVNLRKLLEASETIRAIRLALSGNNEKAVLNLVSENVLGQTMQAKMHNA-YLILQ 446

Query: 346  QSVNVLFDGK--NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
            Q +  +FD         R    GI Q+LEKK+GLFR  +MGKRVN+ACRSVI+PDPYL +
Sbjct: 447  QRMGAIFDQDLDKWTDVRIQVPGIKQILEKKQGLFRMNMMGKRVNFACRSVITPDPYLDI 506

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLST----MRLPPN 459
            +EIGIP  FA +LT  E V   N+V+LR  I NG   HPG    L K S     ++ P  
Sbjct: 507  DEIGIPELFAKKLTVTESVNAMNLVRLRKMIKNGPNFHPGYELLLFKNSGSANFIQKPGR 566

Query: 460  KKMRISIGRKLDTSRGAI-VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
                +S+ ++ +    A  +QPG  S   +  + V RHL  GD+VL+NRQP+LHKPS+M 
Sbjct: 567  YTQVLSVNKRNERDAAAKRLQPGSSSHLGYPIQ-VLRHLDKGDLVLMNRQPSLHKPSMMG 625

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H  RVL  ++ LRM+YA C  YNADFDGDEMN HF Q+ +++ E                
Sbjct: 626  HRARVLXSQRALRMNYAPCKAYNADFDGDEMNGHFVQNRIAQTELA-------------- 671

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
                       IVS  LLT +  F N+++F  L+ S+   ++          QR++I   
Sbjct: 672  ----------EIVSGVLLTIRGRFFNKEDFMHLVLSAFAETT----------QRLVIPP- 710

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADK 697
                    PA+ KPE LW+GKQ+I+ VL N I   +P   +    K P   +K       
Sbjct: 711  --------PAMLKPEVLWSGKQIISTVLRNCIPLHKPLLNIRSKAKTPLSCWK------- 755

Query: 698  QSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN 757
                                                    E + + +  +SE +++  + 
Sbjct: 756  ---------------------------------------VEDHSAPKFNMSESEVVFRQA 776

Query: 758  DLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
            +L+ GV+DK  +    YGL+H   +LYG   A  +LS  SRLFT  LQ HGFT GV D+L
Sbjct: 777  ELLVGVLDKQHYGSTQYGLIHCCWDLYGHQFATRILSCFSRLFTTHLQYHGFTLGVADIL 836

Query: 816  ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYF 875
            I K+ +++RK  +    + G  V  E   L++ A+   IK           G    +   
Sbjct: 837  IRKEADKQRKKEIKALRKCGDTVVRECFNLDEDADESEIKHVMASAYCNPKGEQNYIQQL 896

Query: 876  DMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQE 935
            D KM   LN+          +  GL+K   +N + LM  SGAKG+ VN  QIS  LGQ E
Sbjct: 897  DYKMKETLNRVC--------MPAGLIKLFPQNALQLMILSGAKGTMVNSVQISCELGQIE 948

Query: 936  LEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAV 995
            LEG R P   +G+TLPSF  +D +PRAGGF+  RFLTG+ PQE +FH MAGREGL+DTAV
Sbjct: 949  LEGHRPPMTNAGRTLPSFRSFDTSPRAGGFVDQRFLTGINPQELFFHTMAGREGLIDTAV 1008

Query: 996  KTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS--KFDAL 1053
            KTSRSGYLQRC++K+LE L   YD +VRD DGSI+QF YGEDG+DV +++F+   +FD L
Sbjct: 1009 KTSRSGYLQRCIVKHLEGLVAQYDSTVRDHDGSIIQFRYGEDGMDVCKSTFMDSKQFDFL 1068

Query: 1054 A-----ARERGRGRGRN------KFCDKGSHTFVMGRNQEMIYKK---CSGQLDASNAYI 1099
            A      R R      N      K C+K        R +  I+K+    SG ++ S  Y 
Sbjct: 1069 ADNMQVLRSRVLPVDYNEDDWDLKKCEKAYKKIKKWRRKYGIHKRKVYTSGYVEFSKEYR 1128

Query: 1100 MELPDALKDNAEKFAD--KFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLL-------A 1150
                + ++    +  D  ++  +  A +     V  K   + +    P  LL        
Sbjct: 1129 GTPKEKVQKMWFELTDEERYEYHSKAGKACPTAVDEKMNPNRSLGALPQKLLDDIDDYIC 1188

Query: 1151 SQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTP 1197
             +S+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL  AS DIKTP
Sbjct: 1189 RKSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASNDIKTP 1235



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 30/50 (60%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
           C+TC Q+   CPGH GHI L +P +NPLLF   ++L+   C  CH    +
Sbjct: 67  CETCHQQGTYCPGHMGHIQLDIPAFNPLLFGFTFSLMNGTCVQCHRLTCN 116


>gi|17647875|ref|NP_523743.1| RNA polymerase I subunit [Drosophila melanogaster]
 gi|7303170|gb|AAF58234.1| RNA polymerase I subunit [Drosophila melanogaster]
          Length = 1642

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 334/867 (38%), Positives = 488/867 (56%), Gaps = 125/867 (14%)

Query: 223  GSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI--------SDMQQQGFG 274
            G+GA   G  + K +F+      + +  + +++ N  EL   +        +D+ Q   G
Sbjct: 238  GTGAETGG--QNKVIFA-----DECRRYLRQIYANYPELLKLLVPVLGLSNTDLTQ---G 287

Query: 275  KKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQAN-------IYLANAY 327
             ++   +FF+  + V P + R  +  GD +  +PQT +   +++ N        Y+    
Sbjct: 288  DRSPVDLFFMDTLPVTPPRARPLNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQ 347

Query: 328  VNQPDNAKV-------------IVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKK 374
                + AK              +   W+ LQ SV+VL D  N + +     G+ Q++EKK
Sbjct: 348  EKLTEEAKAAYQTLKGETAHEKLYTAWLALQMSVDVLLD-VNMSREMKSGEGLKQIIEKK 406

Query: 375  EGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSI 434
             GL R  +MGKRVNYA R+VI+PDP + V+EIGIP  FA +L+YP  VT WNV +LR  +
Sbjct: 407  SGLIRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMV 466

Query: 435  INGAEIHPGATHYLDK--LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-K 491
            +NG ++HPGA +  DK   +T     N   R S+ + L +             N  +G K
Sbjct: 467  MNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLS-------------NPKDGIK 513

Query: 492  MVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNV 551
            +V+RH+ +GDV+L+NRQP+LHKPSIM H  R+L GEKT R+HY+NC  YNADFDGDEMN 
Sbjct: 514  IVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNA 573

Query: 552  HFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL 611
            H+PQ EV+RAEAYN+VN  + Y+ P +G PL  LIQDH++S   L+ +  F NR+++ QL
Sbjct: 574  HYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQL 633

Query: 612  LYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITR 671
            ++                     +S+ ++++  L P I KP  LW+GKQ+++ ++ +I  
Sbjct: 634  VFQG-------------------LSQLKKDIKLLPPTILKPAVLWSGKQILSTIIINII- 673

Query: 672  GRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKP 731
                         P+ +   R N D             +K        +GK   V   +P
Sbjct: 674  -------------PEGY--ERINLD-----------SFAKI-------AGKNWNVSRPRP 700

Query: 732  ---GEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNT 786
               G   E         +LSE ++ I   +L+ GV+DK Q+    YGL+H + ELYG + 
Sbjct: 701  PICGTNPEGN-------DLSESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGDV 753

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE 846
            +  LL+A +++FT FLQ+ GFT GV D+L+    +R+R+  +     +G      ALELE
Sbjct: 754  STLLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALELE 813

Query: 847  DGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
            D    D  +L  ++E A        V   D K  S L+ +T + + +  L  GL+     
Sbjct: 814  DEPPHD--ELVEKMEAAYVKDSKFRV-LLDRKYKSLLDGYT-NDINSTCLPRGLITKFPS 869

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
            N + LM  SGAKGS VN  QIS  LGQ ELEGKR P M+SGK+LPSF  ++ +P++GGFI
Sbjct: 870  NNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGFI 929

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
              RF+TG++PQ+++FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE L + YD +VRD+D
Sbjct: 930  DGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSD 989

Query: 1027 GSIVQFCYGEDGVDVHQTSFIS-KFDA 1052
             S+VQF YGEDG+D+ ++ F + KF A
Sbjct: 990  NSVVQFLYGEDGLDILKSKFFNDKFCA 1016



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/84 (64%), Positives = 68/84 (80%)

Query: 1124 KQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRL 1183
            K+    +++ K + SLA PGEPVGL+A+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL
Sbjct: 1156 KETIADIMRVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRL 1215

Query: 1184 QEILTIASKDIKTPVITCPLLVGK 1207
            +EIL +AS +IKTP +  P+  G+
Sbjct: 1216 REILMLASSNIKTPSMDIPIKPGQ 1239



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC + Q  CPGH GHI+L  PVYNP     +  LL   C  C+  +    E E  + +
Sbjct: 66  CGTCLKLQD-CPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQ 124

Query: 61  LELIIKGDIIAAKSLDL 77
           L LI  G II A+ L+L
Sbjct: 125 LRLIDAGYIIEAQELEL 141


>gi|56405368|sp|P91875.2|RPA1_DROME RecName: Full=DNA-directed RNA polymerase I subunit RPA1; Short=RNA
            polymerase I subunit A1; AltName: Full=DNA-directed RNA
            polymerase I largest subunit; AltName: Full=DNA-directed
            RNA polymerase I subunit A
          Length = 1642

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 334/867 (38%), Positives = 488/867 (56%), Gaps = 125/867 (14%)

Query: 223  GSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI--------SDMQQQGFG 274
            G+GA   G  + K +F+      + +  + +++ N  EL   +        +D+ Q   G
Sbjct: 238  GTGAETGG--QNKVIFA-----DECRRYLRQIYANYPELLKLLVPVLGLSNTDLTQ---G 287

Query: 275  KKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQAN-------IYLANAY 327
             ++   +FF+  + V P + R  +  GD +  +PQT +   +++ N        Y+    
Sbjct: 288  DRSPVDLFFMDTLPVTPPRARPLNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQ 347

Query: 328  VNQPDNAKV-------------IVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKK 374
                + AK              +   W+ LQ SV+VL D  N + +     G+ Q++EKK
Sbjct: 348  EKLTEEAKAAYQTLKGETAHEKLYTAWLALQMSVDVLLD-VNMSREMKSGEGLKQIIEKK 406

Query: 375  EGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSI 434
             GL R  +MGKRVNYA R+VI+PDP + V+EIGIP  FA +L+YP  VT WNV +LR  +
Sbjct: 407  SGLIRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMV 466

Query: 435  INGAEIHPGATHYLDK--LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-K 491
            +NG ++HPGA +  DK   +T     N   R S+ + L +             N  +G K
Sbjct: 467  MNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLS-------------NPKDGIK 513

Query: 492  MVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNV 551
            +V+RH+ +GDV+L+NRQP+LHKPSIM H  R+L GEKT R+HY+NC  YNADFDGDEMN 
Sbjct: 514  IVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNA 573

Query: 552  HFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL 611
            H+PQ EV+RAEAYN+VN  + Y+ P +G PL  LIQDH++S   L+ +  F NR+++ QL
Sbjct: 574  HYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQL 633

Query: 612  LYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITR 671
            ++                     +S+ ++++  L P I KP  LW+GKQ+++ ++ +I  
Sbjct: 634  VFQG-------------------LSQLKKDIKLLPPTILKPAVLWSGKQILSTIIINII- 673

Query: 672  GRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKP 731
                         P+ +   R N D             +K        +GK   V   +P
Sbjct: 674  -------------PEGY--ERINLD-----------SFAKI-------AGKNWNVSRPRP 700

Query: 732  ---GEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNT 786
               G   E         +LSE ++ I   +L+ GV+DK Q+    YGL+H + ELYG + 
Sbjct: 701  PICGTNPEGN-------DLSESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGDV 753

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE 846
            +  LL+A +++FT FLQ+ GFT GV D+L+    +R+R+  +     +G      ALELE
Sbjct: 754  STLLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALELE 813

Query: 847  DGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
            D    D  +L  ++E A        V   D K  S L+ +T + + +  L  GL+     
Sbjct: 814  DEPPHD--ELVEKMEAAYVKDSKFRV-LLDRKYKSLLDGYT-NDINSTCLPRGLITKFPS 869

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
            N + LM  SGAKGS VN  QIS  LGQ ELEGKR P M+SGK+LPSF  ++ +P++GGFI
Sbjct: 870  NNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGFI 929

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
              RF+TG++PQ+++FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE L + YD +VRD+D
Sbjct: 930  DGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSD 989

Query: 1027 GSIVQFCYGEDGVDVHQTSFIS-KFDA 1052
             S+VQF YGEDG+D+ ++ F + KF A
Sbjct: 990  NSVVQFLYGEDGLDILKSKFFNDKFCA 1016



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/84 (64%), Positives = 68/84 (80%)

Query: 1124 KQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRL 1183
            K+    +++ K + SLA PGEPVGL+A+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL
Sbjct: 1156 KETIADIMRVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRL 1215

Query: 1184 QEILTIASKDIKTPVITCPLLVGK 1207
            +EIL +AS +IKTP +  P+  G+
Sbjct: 1216 REILMLASSNIKTPSMDIPIKPGQ 1239



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC + Q  CPGH GHI+L  PVYNP     +  LL   C  C+  +    E E  + +
Sbjct: 66  CGTCLKLQD-CPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQ 124

Query: 61  LELIIKGDIIAAKSLDL 77
           L LI  G II A+ L+L
Sbjct: 125 LRLIDAGYIIEAQELEL 141


>gi|358337315|dbj|GAA55692.1| DNA-directed RNA polymerase I subunit RPA1 [Clonorchis sinensis]
          Length = 1612

 Score =  546 bits (1408), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 373/1069 (34%), Positives = 525/1069 (49%), Gaps = 178/1069 (16%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDM-QQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKG 300
            LLP   +  +  LW N+  L   +  M        +    +FF+  VL+ P   RLP   
Sbjct: 98   LLPETARLFLRCLWTNDASLLRLLFPMLNSAAISHEFATDVFFMDAVLLSPSICRLPRYV 157

Query: 301  GDSVMEHPQTVLLSKVLQANIYLAN----------------------------------- 325
            G    EHP+T + S+V++    L++                                   
Sbjct: 158  GGLAFEHPETAVYSRVVRRAQCLSHIVDFIEQRQQQAQLEQTDRESAFQQSLADLSTDPD 217

Query: 326  -AYVNQPDNAKVIVARWMN---LQQSVNVLFDGKNAAGQRDMAS-------------GIC 368
             + VN  D  +V  A  +    LQ +VN L+D   A     + S             G+ 
Sbjct: 218  ASLVNLNDATRVEGALKLACILLQAAVNGLYDMNAATIPTGLDSKLGGMGKSVVRLPGLR 277

Query: 369  QLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVV 428
            Q LEKKEGLFR  +MGKRVNYACRSVISPDP L V E+G+P +FA RLT+P  V   N+ 
Sbjct: 278  QRLEKKEGLFRMHIMGKRVNYACRSVISPDPILDVTEVGVPLFFATRLTFPTPVNMHNLA 337

Query: 429  KLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSR-----GAIVQPGKD 483
            ++R  + NG +I+PGA        +++ P  + + +  G      R        + P   
Sbjct: 338  QMRQLVCNGPDIYPGA-------RSVQTPEGQLIHLPRGNTAQAKRRRETLACCLTPVSS 390

Query: 484  SDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVL--KGEKTLRMHYANCSTYN 541
            +       +V RH+  GD++++NRQPTLHKPS+ AH VR++     KTLRMHY+NC  YN
Sbjct: 391  TSTGIPF-VVNRHVLQGDMLVMNRQPTLHKPSMQAHRVRIIHSTAAKTLRMHYSNCRAYN 449

Query: 542  ADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDT 601
            ADFDGDEMN H  Q   + AE  ++ +  + Y+ P +G PL  LIQDH+++A  LT +D 
Sbjct: 450  ADFDGDEMNGHLVQSYAALAELESLASVPSHYLGPKDGAPLAGLIQDHVIAAVKLTMRDR 509

Query: 602  FLNRDEFCQLLYSS--GVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
            F ++ ++  L+Y +   V  +   +  G P            ++ L PAI  P+ LWTGK
Sbjct: 510  FFDQSDYLDLVYHALRSVFDAAKDNCAGPP-----------TLVTLPPAIMWPKRLWTGK 558

Query: 660  QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
            QV++ +L ++T    P++                N   +  R K                
Sbjct: 559  QVVSTLLINLTPPDLPYI----------------NCTLRGRRTK---------------- 586

Query: 720  SGKKKEVVEG-KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVH 776
                 E+  G  PG+             LS+  +++    LV G++DKA       GL+H
Sbjct: 587  ----AELWSGVAPGQATP----------LSDVDVVVCDGYLVSGMLDKAHIGSSSGGLIH 632

Query: 777  TVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGK 836
             V EL+G  TA  LL+ +S L    L+   FT G+ D+L+  D   +R        ++G 
Sbjct: 633  CVHELHGPKTAAHLLNGISLLANRLLKFTAFTMGIKDMLLSDDANEQRSRRFVQLRDLGL 692

Query: 837  RVHLEALELEDGA----EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVI 892
                +A EL+  +    E+  +  +++   +        +   D  M ++L K    +V 
Sbjct: 693  CAFADAFELDPNSLTEHEVRRLYRQAQFAPSTDQVLSKRILQLDNAMKNRL-KRAQDAVC 751

Query: 893  NELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPS 952
            +  +  GL     +N + LM   GAKG  VN QQ+S  LGQ ELEG+RVP M+SG++LPS
Sbjct: 752  DSAIPSGLYVGFPENNLQLMVHVGAKGGMVNAQQMSVALGQIELEGRRVPLMLSGRSLPS 811

Query: 953  FHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 1012
            F P+D  PRAGG    RFLT L PQE +FH MAGR+GLVDTAVKTSRSGYLQR  IK+LE
Sbjct: 812  FPPYDVRPRAGGMCTHRFLTSLPPQELFFHSMAGRDGLVDTAVKTSRSGYLQRSAIKHLE 871

Query: 1013 CLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISK-----FDALAARERGRGRGRNKF 1067
             L I YD +VRD+  +++QF YG+DGVDV Q SF+       F   AA    R    N  
Sbjct: 872  DLSIQYDGTVRDSGNNVIQFHYGDDGVDVCQASFLQSAGLHLFADNAALLSMRWYSSNGL 931

Query: 1068 CDKGSHTFVMGRNQ-EMIYKKCSGQLDASNAYIMELPDALKDNAE-KFADKFLSNEMAKQ 1125
                 H  ++G N      ++ + Q+      ++     +K  +E K A  F     A++
Sbjct: 932  NHSIGHQHLLGPNALPRPLQQIADQVGTERQMLL-----MKSPSEHKIAKLFRKARRAER 986

Query: 1126 DFLKLVKHKFVLSLAQ-------------------------------PGEPVGLLASQSV 1154
             F + VK +  LS  +                               PGEPVGLLA+QSV
Sbjct: 987  SFSETVKQQKQLSAMELLNADLPDPPCVVASALRELCLAKLISAQVPPGEPVGLLAAQSV 1046

Query: 1155 GEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL   S  I TP +  P+
Sbjct: 1047 GEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMSGSPHISTPCMEVPV 1095


>gi|290990590|ref|XP_002677919.1| DNA-directed RNA polymerase subunit A [Naegleria gruberi]
 gi|284091529|gb|EFC45175.1| DNA-directed RNA polymerase subunit A [Naegleria gruberi]
          Length = 1755

 Score =  546 bits (1408), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 329/860 (38%), Positives = 481/860 (55%), Gaps = 109/860 (12%)

Query: 366  GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPW 425
            G+ QL++KK GL RQ +MGKRVNY+ R+VI PD  +A NE+  P  FA ++T+ E VT +
Sbjct: 530  GMKQLMDKKAGLVRQSMMGKRVNYSARTVILPDVAIACNEVSFPAMFAKKMTFMETVTNF 589

Query: 426  NVVKLRDSIINGAEIHPGATHYL-------DKLSTMRLPPNKKMRISIGRKLDTSRGAIV 478
            N+ K+R+ +INGA+ +PGA   +       D  S+  + P  +  +SI   +  S+   V
Sbjct: 590  NINKMRELVINGAKQYPGANQIVKSGKTQSDVSSSTAVAPYTRPPLSIQLNVVKSKKQRV 649

Query: 479  QPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 537
                   N+ + G +VYRHLQDGD++L+NRQP+LH+PSI+AH  RV+  ++ +R+HYA+C
Sbjct: 650  AMA----NQLQVGDVVYRHLQDGDMLLMNRQPSLHRPSILAHRARVIANQRVMRLHYASC 705

Query: 538  STYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
             ++NADFDGDEMN HF Q+ ++++EA  +++A   +  P++G+PLR LIQDH+ SA LLT
Sbjct: 706  KSFNADFDGDEMNAHFVQNPIAQSEARQLMDAQLSFCTPTSGEPLRGLIQDHVSSAVLLT 765

Query: 598  KKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWT 657
             KD FL+R+++ ++L S+ +                 + RSE      +P+I KP PLWT
Sbjct: 766  MKDNFLSREDYQEILLSANIFDVNE------------VIRSE------IPSILKPTPLWT 807

Query: 658  GKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHK 717
            GKQVIT++L H+ +   P      G                                ++ 
Sbjct: 808  GKQVITSLLKHVAKKNTPAGAPVFG--------------------------------VNL 835

Query: 718  DKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLV 775
            D   K K  V G   EE                 ++I  N+L+ G+ DK+Q   + YG++
Sbjct: 836  DCKTKVKGTVWGAHNEEG---------------MVIIRDNELLTGIFDKSQVGSSKYGIL 880

Query: 776  HTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIG 835
            H   E YG+N +  L+S LSR+ T +L     +CG+DD L+ K  E  R   L  S E  
Sbjct: 881  HAFDECYGNNASNMLISCLSRMLTFYLHYFAISCGIDDCLLSKSAEANRIETLKNSNEAC 940

Query: 836  KRVHLEALEL---EDGAEIDPIKLKSEIEKAMRGG----------GDAAVAYFDMKMTSQ 882
                     L   +D ++ D  K+K  + K M              +  V   D  +   
Sbjct: 941  HHATASYCGLPKKKDASQYDHDKVKEFLAKHMLNPTVSKQTGEIINEKIVRKLDSTVKKS 1000

Query: 883  LNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
            +NK T+ + IN+ +  G  K    N +SLMT +GAKGS VN  QI+  LG QE EGKRV 
Sbjct: 1001 INKFTTKA-INDSIPMGQYKAFPYNMLSLMTETGAKGSMVNSSQIAVCLGLQEFEGKRVN 1059

Query: 943  RMV-SGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSG 1001
              V SGKTLPSF  +D    A G++  RFLTG++PQE++FHCMAGR+GL+DTAVKT+RSG
Sbjct: 1060 VQVKSGKTLPSFDSFDSNNIANGYVASRFLTGIKPQEFFFHCMAGRDGLIDTAVKTARSG 1119

Query: 1002 YLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRG 1061
            YLQRCLIK+LE L + YD +VR+ + ++VQF YG D +D  +T ++++FD +   +    
Sbjct: 1120 YLQRCLIKHLEDLSVQYDGTVRNGNKTVVQFSYGGDHIDPIKTGYMTQFDFMRMNQDLLS 1179

Query: 1062 RGRNKFCDKGSHTFVMGRNQE-------MIYKKCSGQLDASNAYIMELPDALKDNAEKF- 1113
            +  N+      +T  +   QE        IYK    Q++    Y+  + DA     +K+ 
Sbjct: 1180 QRYNE-ESAIQYTKDVKEWQEKTKNATSTIYKNDFVQIEDPWNYLGGVSDAYDKKLKKYI 1238

Query: 1114 -ADKFLSNEMAKQDF----LKLVKH-KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFH 1167
             A K  +    K+ F    +K + H K++ SL    +PVG++A QS+GEPSTQMTLNTFH
Sbjct: 1239 EATKTTTLSDTKKKFDPERIKTLAHLKYLRSLVNASDPVGIIAGQSIGEPSTQMTLNTFH 1298

Query: 1168 LAGRGEMNVTLGIPRLQEIL 1187
             AG    +VT+GIPRL E+L
Sbjct: 1299 FAGLDMAHVTVGIPRLVELL 1318



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG     CPGHFGHI +  PV+N LL   +  ++   C FC      +   EK +  
Sbjct: 61  CETCGLVNTFCPGHFGHISIPQPVFNVLLKTDVTQVMNLCCPFCEKLHIPKE--EKTILY 118

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPED 88
           L L         + LD  LPSE+    D
Sbjct: 119 LVL---------RLLDCGLPSEAMELND 137


>gi|195583416|ref|XP_002081518.1| GD25674 [Drosophila simulans]
 gi|194193527|gb|EDX07103.1| GD25674 [Drosophila simulans]
          Length = 1642

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 325/808 (40%), Positives = 463/808 (57%), Gaps = 107/808 (13%)

Query: 274  GKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQAN-------IYLANA 326
            G ++   +FF+  + V P + R  +  GD +  +PQT +   +++ N        Y+   
Sbjct: 287  GDRSPVDLFFMDTLPVTPPRARPLNMVGDMLKGNPQTDMYLNIIENNHVLNVVLKYMKGG 346

Query: 327  YVNQPDNAKV-------------IVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEK 373
                 + AK              + A W+ LQ SV+VL D  N + +     G+ Q++EK
Sbjct: 347  QEKLTEEAKAAYQTIKGETAHEKLYAAWLALQMSVDVLLD-VNMSREMKSGEGLKQIIEK 405

Query: 374  KEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDS 433
            K GL R  +MGKRVNYA R+VI+PDP + V+EIGIP  FA +L+YP  VT WNV +LR  
Sbjct: 406  KSGLIRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTDWNVTELRKM 465

Query: 434  IINGAEIHPGATHYLDK--LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG- 490
            ++NG ++HPGA +  DK   +T     N   R S+ + L +             N  +G 
Sbjct: 466  VMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLS-------------NPKDGI 512

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
            K+V+RH+ +GDV+L+NRQP+LHKPSIM H  R+L GEKT R+HY+NC  YNADFDGDEMN
Sbjct: 513  KIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMN 572

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
             H+PQ EV+RAEAYN+VN  + Y+ P +G PL  LIQDH++S   L+ +  F NR+++ Q
Sbjct: 573  AHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQ 632

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            L++                     +S+ ++ +  L P I KP  L +GKQ+++ ++ HI 
Sbjct: 633  LVFQG-------------------LSQLKKNIKLLPPTILKPALLGSGKQILSTIIIHII 673

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                          P+ +   R N D             +K        +GK   V   +
Sbjct: 674  --------------PEGY--ERINLD-----------SFAKI-------AGKNWNVSRPR 699

Query: 731  P---GEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSN 785
            P   G   E         ELSE ++ I   +L+ GV+DK Q+    YGL+H + ELYG +
Sbjct: 700  PAICGTNPEGN-------ELSESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGD 752

Query: 786  TAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALEL 845
             +  LL+A +++FT FLQ+ GFT GV D+L+    +R+R+  +     +G      ALEL
Sbjct: 753  VSTLLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALEL 812

Query: 846  EDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTG 905
            ED    D  +L  ++E A        V   D K  S L+ +T + + +  L  GL+    
Sbjct: 813  EDEPPHD--ELVEKMEAAYVKDSKFRV-LLDRKYKSVLDSYT-NDINSTCLPRGLITKFP 868

Query: 906  KNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGF 965
             N + LM  SGAKGS VN  QIS  LGQ ELEGKR P M+SGK+LPSF  ++ +P++GGF
Sbjct: 869  SNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGF 928

Query: 966  IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDA 1025
            I  RF+TG++PQ+++FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE L + YD +VRD+
Sbjct: 929  IDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDS 988

Query: 1026 DGSIVQFCYGEDGVDVHQTSFIS-KFDA 1052
            D S+VQF YGEDG+D+ ++ F + KF A
Sbjct: 989  DNSVVQFLYGEDGLDILKSKFFNDKFCA 1016



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/84 (64%), Positives = 68/84 (80%)

Query: 1124 KQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRL 1183
            K+    +++ K + SLA PGEPVGL+A+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL
Sbjct: 1156 KETIADIMRVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRL 1215

Query: 1184 QEILTIASKDIKTPVITCPLLVGK 1207
            +EIL +AS +IKTP +  P+  G+
Sbjct: 1216 REILMLASSNIKTPSMDIPIKPGQ 1239



 Score = 63.2 bits (152), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 2/102 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC + Q  CPGH GHI+L  PVYNP     +  LL   C  C+  +    E E  + +
Sbjct: 66  CGTCLKLQD-CPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHEREIIMLQ 124

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTP 102
           L LI  G II A+ L+L   SE+      ++    +  MV P
Sbjct: 125 LRLIDAGYIIEAQELEL-FKSETVCQNTDNLVAIKNGDMVHP 165


>gi|194757042|ref|XP_001960774.1| GF13529 [Drosophila ananassae]
 gi|190622072|gb|EDV37596.1| GF13529 [Drosophila ananassae]
          Length = 1643

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 324/795 (40%), Positives = 468/795 (58%), Gaps = 103/795 (12%)

Query: 281  IFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL----------------- 323
            +FF+  + V P + R  +   D +  +PQT +   +++ N  L                 
Sbjct: 293  MFFMEAIPVTPPRARPMNMINDMLKGNPQTDVYIHIIENNHVLNVVIKCMKGMQEKLSPE 352

Query: 324  -ANAYVN-QPDNA-KVIVARWMNLQQSVNVLFDGKNAAGQRDM--ASGICQLLEKKEGLF 378
              +AY N +  NA + +   W+ LQ SV+VL D       RDM  A G+ Q+LEKKEGL 
Sbjct: 353  ALSAYNNLKGGNAHEKLYNAWLALQTSVDVLLD---VNMSRDMKTAEGLKQVLEKKEGLI 409

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRVNYA R+VI+PDP + V+EIGIP  FA +L+YP  VT WNV +LR  ++NG 
Sbjct: 410  RKHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGP 469

Query: 439  EIHPGATHYLDKLSTMRLPP--NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
            ++HPGA +  DK       P  N   R S+ + L      +  P KD  N     +V+RH
Sbjct: 470  DVHPGANYIQDKNGYTTYIPADNAAKRESLAKLL------LSNP-KDGVN-----IVHRH 517

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            + +GD +L+NRQP+LHKPSIMAH  R+L+GEKT R+HY+NC  YNADFDGDEMN H+PQ 
Sbjct: 518  VLNGDPLLLNRQPSLHKPSIMAHKARILRGEKTFRLHYSNCKAYNADFDGDEMNAHYPQS 577

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            EV+RAEA+N+VN  + Y+ P +G PL  LIQDH++S   L+ +  F NR+++ QL++   
Sbjct: 578  EVARAEAHNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQLVF--- 634

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                GL S            + + ++LP  PAI KP  LW+GKQ+++ ++ ++       
Sbjct: 635  ---QGLSSL-----------KKDVKLLP--PAILKPVRLWSGKQILSTIIINL------- 671

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+ +   R N D             +K         GK   V   +P     
Sbjct: 672  -------IPEGY--ERINLD-----------SFAKI-------GGKNWNVDRPRP----P 700

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSAL 794
               +  ++ EL E ++ I K +L+ GV+DK Q+    +GL+H + ELYG + +  LL+A 
Sbjct: 701  LCGSTIRDNELDESQVQIRKGELLVGVLDKQQYGATTFGLIHCMYELYGGDVSTRLLTAF 760

Query: 795  SRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGS-EEIGKRVHLEALELEDGAEIDP 853
            +++FT FLQM GFT GV D+L+  + ++ R+  +     ++G      ALE+++    D 
Sbjct: 761  TKVFTFFLQMEGFTLGVKDILVTGEADKRRRKIVEECRRDVGNSAVAAALEMDEVPPHD- 819

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
             +L  ++E A        V   D K  S L+ +T + +    L +GL+     N + LM 
Sbjct: 820  -ELVEKMEHAYVKDPKFRV-LLDRKYKSLLDGYT-NDINKTCLPDGLVTKFPSNNLQLMV 876

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEGKR P M+SGK+LPSF  ++ +P++GGFI  RF+TG
Sbjct: 877  LSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGFIDGRFMTG 936

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            ++PQ+++FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE L + YD +VRD+D S+VQF 
Sbjct: 937  IQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFL 996

Query: 1034 YGEDGVDVHQTSFIS 1048
            YGEDG+D+ ++ F +
Sbjct: 997  YGEDGLDILKSKFFN 1011



 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 68/84 (80%)

Query: 1124 KQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRL 1183
            K+    +++ K + +LA PGEPVGL+A+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL
Sbjct: 1156 KEIIADIMRMKTIKALASPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRL 1215

Query: 1184 QEILTIASKDIKTPVITCPLLVGK 1207
            +EIL +AS +IKTP +  P+  G+
Sbjct: 1216 REILMLASSNIKTPSMDIPIKPGQ 1239



 Score = 60.5 bits (145), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC + Q  C GH GHI+L  PVYNP    L+  LL   C  C+  +    E +  + +
Sbjct: 66  CGTCLKMQ-ECSGHMGHIELGTPVYNPFFIKLVQRLLCIFCLHCYKLQMKDHEQQIIMLQ 124

Query: 61  LELIIKGDIIAAKSLDL 77
           L LI  G II A+ L+L
Sbjct: 125 LRLIDAGYIIEAQELEL 141


>gi|170067707|ref|XP_001868588.1| DNA-directed RNA polymerase I largest subunit [Culex
            quinquefasciatus]
 gi|167863791|gb|EDS27174.1| DNA-directed RNA polymerase I largest subunit [Culex
            quinquefasciatus]
          Length = 1692

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 330/798 (41%), Positives = 456/798 (57%), Gaps = 102/798 (12%)

Query: 281  IFFLGVVLV-PPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
            +FF+ V+ V PP+   +    G  ++EHPQT +L  +L AN  L +  V    + + + A
Sbjct: 289  LFFMNVIPVQPPLVRPVRRVEGQEILEHPQTTILRNILMANAVLRSILVMSTKDDEALGA 348

Query: 340  R-----------------------WMNLQQSVNVLFD-GKNAAGQRDMASGICQLLEKKE 375
                                    W++LQ  V+   D   +   Q+    G+ Q++EKKE
Sbjct: 349  MDVEMKKVYESAKGGTGLEKLYLAWIDLQNFVDQSLDINMSQEKQKGRGCGLKQIIEKKE 408

Query: 376  GLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSII 435
            GL R  +MGKRVNYA R+VI+PDP + V+EIGIP  FA RLTYP  VTPWNV +LR  +I
Sbjct: 409  GLVRMHMMGKRVNYAARTVITPDPNIGVDEIGIPITFAKRLTYPVPVTPWNVAELRKMVI 468

Query: 436  NGAEIHPGATHYLDKLSTM-RLP-PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMV 493
            NG + +PGA    D    + R+   N   R S+ + L T           S N+   K+V
Sbjct: 469  NGPDGYPGANMVEDSNGQVSRISGHNATHRESMAKTLLTPH---------SSNQQGVKIV 519

Query: 494  YRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHF 553
            +RHL  GDV+L+NRQPTLH+PSIMAH  ++L GEK  R+HY+NC +YNADFDGDEMN HF
Sbjct: 520  HRHLLSGDVLLLNRQPTLHRPSIMAHKAKILPGEKIFRLHYSNCKSYNADFDGDEMNAHF 579

Query: 554  PQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLY 613
            PQ E++R+EAYN+V   +QY+ P +G PL  LIQDHIVSA  L  +  F NRD++ QL++
Sbjct: 580  PQSELARSEAYNLVAVPHQYLVPKDGTPLGGLIQDHIVSAVKLFIRGKFFNRDDYQQLVF 639

Query: 614  SSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL-NHITRG 672
                             Q +   R + E+LP  P I KP  LW+GKQ+I+ ++ N I RG
Sbjct: 640  -----------------QALSNHRGDIELLP--PTILKPARLWSGKQIISTIVKNIIPRG 680

Query: 673  RPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPG 732
             P   +    KL    ++T                                       P 
Sbjct: 681  MPHINMIGTSKLGNKHWQT--------------------------------------APP 702

Query: 733  EEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTL 790
                A        ++SE ++ I   +L+ G++DK  F    YGL+H + ELYG N +  L
Sbjct: 703  RPWTAGGTPLTGNQMSESEVFIRNGELLVGILDKNHFGATPYGLIHCMYELYGGNCSTLL 762

Query: 791  LSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAE 850
            LS+LSRLFT +LQ  GFT GV D+L+ K  +++R   +    +IG      AL+L    +
Sbjct: 763  LSSLSRLFTYYLQWEGFTLGVRDILVQKQADKKRTKIIQECRKIGHSAAAAALDLP--PD 820

Query: 851  IDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINE-LLSEGLLKPTGKNWI 909
            + P  L +++E+A         A  D +  S L+   +   INE  + +GL+     N +
Sbjct: 821  VSPEVLNAKMEEAY-AKDPKFRAILDRQYKSALDPFNNQ--INEACIPDGLISKFPDNNL 877

Query: 910  SLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDR 969
             LM  SGAKGS VN  QIS  LGQ ELEGKR P M+SGK+LPSF  ++ +P++GGFI  R
Sbjct: 878  QLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPSFASFETSPKSGGFIDGR 937

Query: 970  FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSI 1029
            F+TG++PQ+++FHCMAGREGL+DTAVKTSRSGYLQRCL+K+LE L ++YD +VRD+D S+
Sbjct: 938  FMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLNVNYDMTVRDSDNSV 997

Query: 1030 VQFCYGEDGVDVHQTSFI 1047
            VQF YGEDG+D+ +  FI
Sbjct: 998  VQFMYGEDGMDISKAQFI 1015



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 3/114 (2%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC +    C GHFGHI++ +PV+NP     +Y LL+  C  CH  + S    E    +
Sbjct: 65  CATCVKDMAQCEGHFGHIEICLPVFNPFFIKTVYNLLRISCNACHRLQMSDPLKELLQLQ 124

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPED---SDVSNKSSCSMVTPRGNYDNVRN 111
           L+L+  G I+ A+ L++      +NP +     V+  S   M  P     N +N
Sbjct: 125 LQLVDAGYIVEAEELEMFKAKVCANPTEPLPEAVAYYSELLMNHPYNKLANTKN 178


>gi|401887040|gb|EJT51046.1| hypothetical protein A1Q1_07736 [Trichosporon asahii var. asahii CBS
            2479]
          Length = 1052

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 323/787 (41%), Positives = 457/787 (58%), Gaps = 124/787 (15%)

Query: 245  SDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGH-------SIFFLGVVLVPPIKFRLP 297
            ++V+  + +L++ E E CS +   +  G   K+GH        +FF+ VV VPP +FR P
Sbjct: 340  AEVRSHLRRLFQKEAEACSLLYG-RHGGPQAKSGHIPPPPIADMFFMDVVPVPPTRFRPP 398

Query: 298  SKGGDSVMEHPQTVLLSKVLQA--NIYLANAYV-------------------NQPDNAKV 336
            +K GD + E+ Q  LL+ ++     IY  N  +                   ++  + ++
Sbjct: 399  AKMGDDLFENSQNTLLTAIINTCERIYTVNQTLRDFERQDKSEAVMEALKNLDKTRSFEI 458

Query: 337  IVARWMNLQQSVNVLFDG-KNAAGQRD---MASGICQLLEKKEGLFRQKLMGKRVNYACR 392
            ++   + LQ  VN   D  KN A  +       G+ QLLEKKEGLFR+ +MGKRVNYA R
Sbjct: 459  LLESLIRLQHDVNSFMDSTKNPAVMKQGKLPPQGVKQLLEKKEGLFRKHMMGKRVNYAAR 518

Query: 393  SVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLS 452
            SVISPD  +  NEIGIPP FA +LTYPE VTP NV ++R  +ING ++HPGA    ++  
Sbjct: 519  SVISPDINIETNEIGIPPVFAKKLTYPEPVTPQNVHEMRQLVINGPKVHPGAALVQNEDG 578

Query: 453  TMRLPPNKKMRISIGRKLDTSRGAI----VQPGKDSDNEFEG------KMVYRHLQDGDV 502
            +         +IS+ R     R AI    + P  D+     G      K VYRH++DGD+
Sbjct: 579  S---------QISLDRTTLEQRTAIANQLLTPQNDAWAGSSGGPAARNKKVYRHIRDGDI 629

Query: 503  VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
            V++NRQPTLHKPS+M H V+VL GEKT+RMHYANC++YNADFDGDEMN+HFPQ+E +RAE
Sbjct: 630  VILNRQPTLHKPSMMCHRVKVLHGEKTIRMHYANCNSYNADFDGDEMNIHFPQNETARAE 689

Query: 563  AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL 622
            A  I N +NQY+ P++G+PLR LIQDH+V+   +  K +F  RDE+ QL+Y +  + +  
Sbjct: 690  AQMIANTDNQYLVPTSGNPLRGLIQDHVVAGVWMCNKSSFFTRDEYYQLIYGALRTEN-- 747

Query: 623  GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGG 682
             +++G  G R++          L PAI KP P+WTGKQ+++ +L ++T            
Sbjct: 748  -NYSG--GGRIIT---------LPPAIIKPRPMWTGKQIMSTILVNLT------------ 783

Query: 683  KLPQDFFKTRFNADKQSDRKKNDKG-KLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNK 741
                                 N KG  L+  NK+                 + K  +++ 
Sbjct: 784  -------------------PANAKGLNLTSKNKV-----------------QNKLWQRDD 807

Query: 742  SKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFT 799
            SK++ +SEE ++     L+ GV+DK+Q+  + YGLVH+V ELYG   A  LL+ LSRL T
Sbjct: 808  SKDENMSEENVIFLDGHLILGVLDKSQYGASAYGLVHSVHELYGPYIANRLLAVLSRLLT 867

Query: 800  VFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALEL-EDGAEIDP---IK 855
             +LQ  GF+C +DDL++ ++ ER RK  L  + E G R  L+ + L  DG   +P     
Sbjct: 868  KYLQHTGFSCRMDDLILSEEGERLRKQILDDANEDGMRTALQFVGLPHDGDIHNPELQQN 927

Query: 856  LKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTS 915
            LK  +E+ +R   D  +A  D KM    NK T+S + N++L   L++P   N + +MT S
Sbjct: 928  LKIRLEEILR--DDNLMAGLDAKMQMAFNK-TTSKINNDVLPAHLVRPFPDNNMQMMTIS 984

Query: 916  GAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLR 975
            GAKGSKVN  QIS+ LGQQ LEG+RVP MVSGKTLP+F  +D   RAGG++ +RFLTG+R
Sbjct: 985  GAKGSKVNASQISTLLGQQALEGRRVPTMVSGKTLPAFKAFDTQARAGGYVANRFLTGIR 1044

Query: 976  PQEYYFH 982
            PQEYYFH
Sbjct: 1045 PQEYYFH 1051


>gi|397566986|gb|EJK45326.1| hypothetical protein THAOC_36058 [Thalassiosira oceanica]
          Length = 1952

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 335/836 (40%), Positives = 470/836 (56%), Gaps = 147/836 (17%)

Query: 269  QQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY- 327
            Q    G + G+SIFFL  + VPP +FR P   G   +EH Q   LSKVL+ N  L +++ 
Sbjct: 515  QSAAAGGEKGYSIFFLRCLPVPPSRFRPPMVMGHMTVEHSQNFYLSKVLELNARLRSSFA 574

Query: 328  ---------------VNQPDNAKVIVARWMNLQQS--------------VNVLFDG-KNA 357
                           +N   +      +   +++S              VN   D  ++ 
Sbjct: 575  TSTELLREEGELKISLNNSADGTATSRQLKKVKESREKSQATSSLTARQVNCFMDSSRDP 634

Query: 358  AGQRDMA-SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRL 416
            +G  D A +GI QLLEKKEG+FR+ +MGKRVN+ACRSVISPDPY+  NEIG+P +FA  L
Sbjct: 635  SGASDNAPAGIRQLLEKKEGIFRKHMMGKRVNFACRSVISPDPYIGTNEIGLPLHFAKTL 694

Query: 417  TYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPN---KKMRISIGRKLDTS 473
            T+P  VT  N+ ++++ +  G   +PGA  +++  +  R+      ++ R +I  +L + 
Sbjct: 695  TFPTPVTHLNIAEMQNLVRRGPLEYPGAC-WVEFPNGQRVDLTYMKERSRHAIAARLLSD 753

Query: 474  RGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQ------PTLHKPSIMAHVVRVL--K 525
             G +               V R L+DGD+VL+NRQ      PTLHKP IMAH VRVL   
Sbjct: 754  AGVV--------------KVGRQLKDGDMVLMNRQVRDVHSPTLHKPGIMAHRVRVLFSP 799

Query: 526  GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSL 585
             + TLRMHYA+          DEMN HFPQ  ++ AE++ I   + Q++ P++G PLR L
Sbjct: 800  TQNTLRMHYAS----------DEMNCHFPQSYLATAESHVIAATDEQFIVPTDGSPLRGL 849

Query: 586  IQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL 645
            IQDH+ +   LT+ +TF+ ++E+ QLL+++      LGS    PG  ++ S +  E+LP 
Sbjct: 850  IQDHVDAGVKLTQMNTFIEKEEYQQLLFAA------LGSL---PGLELIRSDANIELLP- 899

Query: 646  LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKND 705
             PAI KP  LWTGKQVI+ +LNH+                               RK ND
Sbjct: 900  -PAIRKPRELWTGKQVISTLLNHL-------------------------------RKGND 927

Query: 706  KGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVID 765
            + +    N               G   E K      +  +  +E  +++   DL++GV+D
Sbjct: 928  RDEDPTFN-------------FSGLSMERKTKTPPTAFGESWNEHMVIVRDGDLLQGVLD 974

Query: 766  KAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH-GFTCGVDDLLILKDKER 822
            KA F  +D+ LVH V E YG   AG +L+AL RLFT ++Q + G +C ++DL++  + + 
Sbjct: 975  KAAFGSSDFSLVHAVYESYGPARAGLILNALGRLFTAYIQYYSGHSCRMEDLILTPEADT 1034

Query: 823  ERKNHLHGSEEIGKRVHLEALELEDGAEID------------PIK------LKSEIEKAM 864
            ER+  +  +  I  R   +A    DG +++            P+K      + S+I K +
Sbjct: 1035 ERRKMVKETYNIASRA-AKAWADSDGGKVEIPSIVQNPKSKLPLKPHEKAAVASKIGKLL 1093

Query: 865  RGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNF 924
             G  + A A  D  M SQ+N   +S++I   L +GL  P  +N   LM T+GAKGS VN 
Sbjct: 1094 SGNKENAAA-LDGYMQSQVNP-LASNIIKLCLPDGLAVPFPENTFGLMVTTGAKGSTVNQ 1151

Query: 925  QQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCM 984
             Q+S  LGQQ LEG+RVPRM SG+TLPSF P+D  PRA GFI DRFLTG+RPQEYYFHCM
Sbjct: 1152 SQVSCSLGQQALEGRRVPRMSSGRTLPSFAPYDPNPRADGFIADRFLTGVRPQEYYFHCM 1211

Query: 985  AGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            AGREGLVDTAVKTSRSGYLQRCL+K+LE LK+SYD++VRD +G ++QF YGEDG+D
Sbjct: 1212 AGREGLVDTAVKTSRSGYLQRCLVKHLEELKVSYDHTVRDGEGGVIQFLYGEDGID 1267



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 61/77 (79%), Gaps = 1/77 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            F +LV  K+  +L  PGE VG +A+QS+GEPSTQMTLNTFHLAG G  NVTLGIPRL+EI
Sbjct: 1461 FGELVSAKYGSALVHPGEAVGSIAAQSIGEPSTQMTLNTFHLAGAG-ANVTLGIPRLREI 1519

Query: 1187 LTIASKDIKTPVITCPL 1203
            +  ASKD+KTP ++ P+
Sbjct: 1520 IMTASKDLKTPTMSVPI 1536



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 76/175 (43%), Gaps = 17/175 (9%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG    LCPGHFGHI+L  P+ +PL F  L   LK  C  CH F+  +R+      K
Sbjct: 151 CPTCGNVPALCPGHFGHIELCTPLMHPLFFPKLLMFLKMKCQACHEFRLGKRQTRVFAAK 210

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVR---------- 110
           L LI  G +  A  LD  L + + +     +  K S S        ++ +          
Sbjct: 211 LHLIDVGRMKEALELDDVLSALNRDAGTGRLEGKISRSEARAEAIANSAKLIDELLDAKL 270

Query: 111 NLKPQEWTSLQFA-EAKLALLQFLK------IETTKCGNCKAKNPRISKPTFGWI 158
           ++ P +  S+      + A  Q LK       + TKC NC A +P+I    F  I
Sbjct: 271 SMTPLDDDSMNLTMHERAARRQILKEFQQACTKCTKCQNCSAFSPKIRHDQFNKI 325


>gi|341884897|gb|EGT40832.1| hypothetical protein CAEBREN_30438 [Caenorhabditis brenneri]
          Length = 1724

 Score =  538 bits (1385), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 317/796 (39%), Positives = 450/796 (56%), Gaps = 106/796 (13%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL-ANAYVNQPDNA------ 334
             FL  VLVPP KFR       +  E PQT+ L +VL+A   + A + + + DN+      
Sbjct: 348  LFLERVLVPPKKFRPIRMFKGAQYEDPQTLNLRRVLEATETISALSLMMKGDNSAKLKEL 407

Query: 335  -------KVIVAR----WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLM 383
                   K I A+    ++ LQ   N +FD     G RD  +GI Q+LEKK+GLFR  +M
Sbjct: 408  IANRVRGKTIDAQIHDAYLQLQLRCNAIFDQDLNRGDRDSIAGIKQILEKKQGLFRMHMM 467

Query: 384  GKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPG 443
            GKRVN+ACRSVI+PDPYL ++EIGIP  FA +LT+ E V  +N+ ++++ +  G   HPG
Sbjct: 468  GKRVNFACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNMKEMKELLRKGPHQHPG 527

Query: 444  ATHYLDKLSTMRL----PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQD 499
            A  Y++      +    P   K R+ + R L+ +    V+         +   V RH+++
Sbjct: 528  ANFYVEPSGKKTMLGDRPEEVKRRMHLARTLNAATTESVR---------QTPKVLRHMKN 578

Query: 500  GDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVS 559
            GD++++NRQP+LHKPSIM H  RVL G++ LRM+YA C  YNADFDGDEMN H  Q  ++
Sbjct: 579  GDMIMMNRQPSLHKPSIMGHRARVLTGQRALRMNYAPCKAYNADFDGDEMNGHLVQSHIA 638

Query: 560  RAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSS 619
            + E   I N  + ++ P +  PL  LIQDH+VS  LLT +D FLN+++F  L+ +S    
Sbjct: 639  QTEVREIANVGSNFLVPKDATPLLGLIQDHVVSGVLLTLRDRFLNKEDFMHLVLASFAQY 698

Query: 620  SGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL-NHITRGRPPFVV 678
            S          +R+       E+ P  P I  P+ LWTGKQV++ ++ N I  G+P   +
Sbjct: 699  S----------KRI-------EIPP--PTILYPKRLWTGKQVVSTIVKNCIPEGKPLINL 739

Query: 679  ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 738
            +   K P   +                                    +V G         
Sbjct: 740  DGKAKTPLSCW------------------------------------IVPG--------- 754

Query: 739  KNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSR 796
              K+ + ++SE  ++  + +L+ GV+DKA F    +GL H   ELYG      LLS  SR
Sbjct: 755  -FKAPDFDMSESHVVFRQGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQLLSCFSR 813

Query: 797  LFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKL 856
            LFT +LQ HGFT GV D+L+L++ + +RK+ +  S  IG +V   A  L + A   P ++
Sbjct: 814  LFTTYLQFHGFTLGVADILVLQEADAKRKDAVMESRTIGDQVVKTAFGLSENAT--PAEI 871

Query: 857  KSEIEKAM---RGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            K  +       RG G   V   D  M   + K+ + ++    +  GLL+   +N + LM 
Sbjct: 872  KRTLAATYCNPRGQG-TDVKMLDFGMKQGIAKY-NDAITKSCVPTGLLRKFPENALQLMI 929

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEGKR+   V+G+TLPSF  +D +PRAGG+I  RFLTG
Sbjct: 930  QSGAKGSAVNAIQISGCLGQIELEGKRMAVTVAGRTLPSFRCFDPSPRAGGYIDQRFLTG 989

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            + PQE +FH MAGREGL+DTAVKTSRSGYLQRC+IK+LE +++ YD +VRD DGS++QF 
Sbjct: 990  MNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVRDHDGSVIQFR 1049

Query: 1034 YGEDGVDVHQTSFISK 1049
            YGEDG+D  + +F++K
Sbjct: 1050 YGEDGMDTTKATFLNK 1065



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 29/47 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF 47
           C TC Q +  CPGH GHI L VPV+NPLLF   + LLK  C  CH  
Sbjct: 67  CLTCNQYERHCPGHMGHIQLSVPVFNPLLFQFTFNLLKGSCVHCHRL 113


>gi|1865779|emb|CAA70321.1| largest subunit of RNA polymerase I (A) [Drosophila melanogaster]
          Length = 1644

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 331/868 (38%), Positives = 486/868 (55%), Gaps = 126/868 (14%)

Query: 223  GSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI--------SDMQQQGFG 274
            G+GA   G  + K +F+      + +  + +++ N  EL   +        +D+ Q   G
Sbjct: 238  GTGAETGG--QNKVIFA-----DECRRYLRQIYANYPELLKLLVPVLGLSNTDLTQ---G 287

Query: 275  KKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQAN-------IYLANAY 327
             ++   +FF+  + V P + R  +  GD +  +PQT +   +++ N        Y+    
Sbjct: 288  DRSPVDLFFMDTLPVTPPRARPLNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQ 347

Query: 328  VNQPDNAKV-------------IVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKK 374
                + AK              +   W+ LQ SV+VL D  N + +     G+ Q++EKK
Sbjct: 348  EKLTEEAKAAYQTLKGETAHEKLYTAWLALQMSVDVLLD-VNMSREMKSGEGLKQIIEKK 406

Query: 375  EGLFRQKLMGKRVNYACRSVISPD-PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDS 433
             GL R  +MGKRVNYA R+VI+P  P + V+EIGIP  FA +L+YP  VT WNV  +R  
Sbjct: 407  CGLIRSHMMGKRVNYAARTVITPAYPNINVDEIGIPDIFAKKLSYPVPVTEWNVTDVRKM 466

Query: 434  IINGAEIHPGATHYLDK--LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG- 490
            ++NG ++HPGA +  DK   +T     N   R S+ + L +             N  +G 
Sbjct: 467  VMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLS-------------NPKDGI 513

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
            K+V+RH+ +GDV+L+NRQP+LHKPSIM H  R+L GEKT R+HY+NC  YNADFDGDEMN
Sbjct: 514  KIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMN 573

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
             H+PQ EV+RAEAYN+VN  + Y+ P +G PL  LIQDH++S   L+ +  F NR+++ Q
Sbjct: 574  AHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQ 633

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            L++                     +S+ ++++  L P I KP  LW+GKQ+++ ++ +I 
Sbjct: 634  LVFQG-------------------LSQLKKDIKLLPPTILKPAVLWSGKQILSTIIINII 674

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                          P+ +   R N D             +K        +GK   V   +
Sbjct: 675  --------------PEGY--ERINLD-----------SFAKI-------AGKNWNVSRPR 700

Query: 731  P---GEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSN 785
            P   G   E         +LSE ++ I   +L+ GV+DK Q+    YGL+H + ELYG +
Sbjct: 701  PPICGTNPEGN-------DLSESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGD 753

Query: 786  TAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALEL 845
             +  L++A +++FT FLQ+ GFT GV D+L+    +R+R+  +     +G      ALEL
Sbjct: 754  VSTLLVTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALEL 813

Query: 846  EDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTG 905
            ED    D  +L  ++E A        V   D K  S L+ +T + + +  L  GL+    
Sbjct: 814  EDEPPHD--ELVEKMEAAYVKDSKFRV-LLDRKYKSLLDGYT-NDINSTCLPRGLITKFP 869

Query: 906  KNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGF 965
             N + LM  SGAKGS VN  QIS  LGQ ELEGKR P M+SGK+LPSF  ++ +P++GGF
Sbjct: 870  SNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGF 929

Query: 966  IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDA 1025
            I  RF+TG++PQ+++FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE L + YD +VRD+
Sbjct: 930  IDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDS 989

Query: 1026 DGSIVQFCYGEDGVDVHQTSFIS-KFDA 1052
            D S+VQF YGEDG+D+ ++ F + KF A
Sbjct: 990  DNSVVQFLYGEDGLDILKSKFFNDKFCA 1017



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/84 (64%), Positives = 68/84 (80%)

Query: 1124 KQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRL 1183
            K+    +++ K + SLA PGEPVGL+A+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL
Sbjct: 1157 KETIADIMRVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRL 1216

Query: 1184 QEILTIASKDIKTPVITCPLLVGK 1207
            +EIL +AS +IKTP +  P+  G+
Sbjct: 1217 REILMLASSNIKTPSMDIPIKPGQ 1240



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC + Q  CPGH GHI+L  PVYNP     +  LL   C  C+  +    E E  + +
Sbjct: 66  CGTCLKLQD-CPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQ 124

Query: 61  LELIIKGDIIAAKSLDL 77
           L LI  G II A+ L+L
Sbjct: 125 LRLIDAGYIIEAQELEL 141


>gi|268532860|ref|XP_002631558.1| Hypothetical protein CBG20734 [Caenorhabditis briggsae]
          Length = 1723

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 316/796 (39%), Positives = 448/796 (56%), Gaps = 106/796 (13%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL-ANAYVNQPDNA------ 334
             FL  +LVPP KFR       +  E PQT+ L KVL+A   + A + + + DN+      
Sbjct: 349  LFLERILVPPKKFRPIRMFKGAQYEDPQTMNLRKVLEATETISAISLIMKGDNSSELIQL 408

Query: 335  -------KVIVAR----WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLM 383
                   K I A+    ++ LQ   N +FD     G RD  +GI Q+LEKK+GLFR  +M
Sbjct: 409  VKDRVRGKTINAQMHDAYLQLQLRANAIFDQDLNKGDRDSIAGIKQILEKKQGLFRMHMM 468

Query: 384  GKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPG 443
            GKRVN+ACRSVI+PDPYL ++EIGIP  FA +LT+ E V  +N+ ++++ +  G   HPG
Sbjct: 469  GKRVNFACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNIKEMKELLHRGPHQHPG 528

Query: 444  ATHYLDKLSTMRL----PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQD 499
            A  +++      +    P   K R  + + L+ +    ++         +   V RH+++
Sbjct: 529  ANFFVEPSGKKTMLGDKPDEVKRRKLMAKTLNAATTTSLR---------QTPKVLRHMRN 579

Query: 500  GDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVS 559
            GD++++NRQP+LHKPSIM H  RVL G++ LRM+YA C  YNADFDGDEMN H  Q  ++
Sbjct: 580  GDMIMMNRQPSLHKPSIMGHRARVLTGQRALRMNYAPCKAYNADFDGDEMNGHLVQSHIA 639

Query: 560  RAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSS 619
            + E   I N  + ++ P +  PL  LIQDH+VS  LLT +D FLN+++F  L+ +S    
Sbjct: 640  QTEVREIANVGSNFLVPKDATPLLGLIQDHVVSGVLLTLRDRFLNKEDFMHLVLASFAQY 699

Query: 620  SGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL-NHITRGRPPFVV 678
            S          +R+       E+ P  P I  P+ LWTGKQV++ ++ N I  G+P   +
Sbjct: 700  S----------KRI-------EIPP--PTILYPKRLWTGKQVVSTIVKNCIPEGKPLINL 740

Query: 679  ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 738
            +   K P   +                                    +V G         
Sbjct: 741  DGKAKTPLSCW------------------------------------IVPG--------- 755

Query: 739  KNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSR 796
              K  + ++SE  ++  K +L+ GV+DKA F    +GL H   ELYG      LLS  SR
Sbjct: 756  -FKQPDFDMSESHVVFRKGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQLLSCFSR 814

Query: 797  LFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKL 856
            LFT +LQ HGFT GV D+L++K+ + +RK+ +  S  IG +V   A  L D A   P ++
Sbjct: 815  LFTTYLQFHGFTLGVADILVVKEADGKRKDAVMESRTIGNQVVKTAFGLPDSAT--PAEI 872

Query: 857  KSEIEKAM---RGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            K  +       RG G   V   D  M   + K+ + ++    +  GLL+   +N + LM 
Sbjct: 873  KRTLAATYCNPRGQG-TDVKMLDFGMKQGIAKY-NDAITKACVPTGLLRLFPQNALQLMI 930

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SGAKGS VN  QIS  LGQ ELEGKR+   V+G+TLPSF  +D +PRAGG+I  RFLTG
Sbjct: 931  QSGAKGSAVNAIQISGCLGQIELEGKRMAVTVAGRTLPSFRCFDPSPRAGGYIDQRFLTG 990

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            + PQE +FH MAGREGL+DTAVKTSRSGYLQRC+IK+LE +++ YD +VRD DGS++QF 
Sbjct: 991  MNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVRDHDGSVIQFR 1050

Query: 1034 YGEDGVDVHQTSFISK 1049
            YGEDG+D  + +F++K
Sbjct: 1051 YGEDGMDTTKVTFLNK 1066



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 79/126 (62%), Gaps = 5/126 (3%)

Query: 1084 IYKKCSGQLDAS---NAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLA 1140
            I KKC   +D     +  +  LP+ + D  E F  K  S E       + +  K + SLA
Sbjct: 1158 IPKKCPEAVDERYNPSCKLGALPEKMLDEIEGFCTK--SKEEPNDILKRTLFWKGMRSLA 1215

Query: 1141 QPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
             PGE VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL  ASK I TP  +
Sbjct: 1216 DPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKSIATPSAS 1275

Query: 1201 CPLLVG 1206
              ++ G
Sbjct: 1276 IAVIAG 1281



 Score = 70.5 bits (171), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 43/94 (45%), Gaps = 16/94 (17%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCH--------------- 45
           C+TC Q +  CPGH GHI L VPV+NPLLF   Y LLK  C  CH               
Sbjct: 67  CRTCNQYERHCPGHMGHIQLAVPVFNPLLFQFTYNLLKGSCVHCHRLTCKGDGVNARMLL 126

Query: 46  -HFKASRREVEKCVRKLELIIKGDIIAAKSLDLD 78
              +     VE     LE I++  I  A  LD D
Sbjct: 127 AQLRCFELGVEHVAFDLEAILRDKITNADLLDDD 160


>gi|157134596|ref|XP_001663321.1| DNA-directed RNA polymerase I largest subunit [Aedes aegypti]
 gi|108870419|gb|EAT34644.1| AAEL013134-PA [Aedes aegypti]
          Length = 1686

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 327/804 (40%), Positives = 462/804 (57%), Gaps = 111/804 (13%)

Query: 281  IFFLGVVLV-PPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYV-NQPDNAK--- 335
            +FF+ VV V PP+   +    G  ++EHPQT +L  +L AN  L    V ++ D+A+   
Sbjct: 281  MFFMDVVPVQPPLVRPVRRVDGMEILEHPQTAILRNILMANATLRAVLVMSKKDDAEGES 340

Query: 336  ----------------------VIVARWMNLQQSVNVLFDGKNAAGQ-RDMASGICQLLE 372
                                   +   W+ LQ  V++  D   A  + +    G+ Q++E
Sbjct: 341  ASTLEAEMKKVYESAKGGSAYEKLYNAWVELQSYVDMSLDINMALDKSKARGFGLKQIIE 400

Query: 373  KKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRD 432
            KKEGL R  +MGKRVNYA R+VI+PDP + V+EIGIP  FA RLTYP  VT WNV +LR 
Sbjct: 401  KKEGLVRMHMMGKRVNYAARTVITPDPNIGVDEIGIPITFAKRLTYPVPVTSWNVAELRK 460

Query: 433  SIINGAEIHPGATHYLD------KLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN 486
             ++NG + +PGA    D      ++S +    N   R S+ + L T           S N
Sbjct: 461  MVLNGPDNYPGANSIEDSNGQVSRISAL----NVTQRESVAKTLLTPH---------SSN 507

Query: 487  EFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDG 546
            +   K+V+RHL +GDV+L+NRQPTLH+PSIMAH  ++L GEK  R+HY+NC +YNADFDG
Sbjct: 508  DQGVKIVHRHLLNGDVLLLNRQPTLHRPSIMAHKAKILSGEKIFRLHYSNCKSYNADFDG 567

Query: 547  DEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRD 606
            DEMN HFPQ E++R+EAYN+V   +QY+ P +G PL  LIQDHIVSA  +  +  F NRD
Sbjct: 568  DEMNAHFPQSELARSEAYNLVAVPHQYLVPKDGTPLGGLIQDHIVSAVKIFIRGKFFNRD 627

Query: 607  EFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL 666
            ++ QL++                 Q +   R + ++LP  P I KP  LW+GKQ+I+ ++
Sbjct: 628  DYQQLVF-----------------QALSNHRGDIDLLP--PTILKPARLWSGKQIISTII 668

Query: 667  NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEV 726
             +I   + P +                                   N +   K G K   
Sbjct: 669  KNIIPKKMPHI-----------------------------------NMIGSAKLGNKHWQ 693

Query: 727  VEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGS 784
             E  P  E  A        ++SE +++I   +L+ G++DK  F    YGL+H + ELYG 
Sbjct: 694  TE--PAREWHAGGTPLTGNQMSESEVIIRNGELLVGILDKNHFGATPYGLIHCMYELYGG 751

Query: 785  NTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALE 844
            + +  LLS+LSRLF+ +LQ  GFT GV D+L+ K  +++R   +    ++G      AL+
Sbjct: 752  HCSTLLLSSLSRLFSYYLQWEGFTLGVKDILVQKHADKKRAKIIKACRQVGHETAASALD 811

Query: 845  LEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL-LSEGLLKP 903
            L    ++   +L S++E+A         A  D K  + L+  T+   INE+ L  GL+  
Sbjct: 812  LP--PDVSAEELNSKMEEAY-AKNPKFRAILDRKYKTALDSFTNQ--INEVCLPGGLITK 866

Query: 904  TGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAG 963
               N + LM  SGAKGS VN  QIS  LGQ ELEGKR P M+SGK+LPSF  ++ +P++G
Sbjct: 867  FPDNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPSFASFETSPKSG 926

Query: 964  GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
            GFI  RF+TG++PQ+++FHCMAGREGL+DTAVKTSRSGYLQRCL+K+LE L ++YD +VR
Sbjct: 927  GFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLNVNYDMTVR 986

Query: 1024 DADGSIVQFCYGEDGVDVHQTSFI 1047
            D+D S+VQF YGEDG+D+ +  FI
Sbjct: 987  DSDNSVVQFMYGEDGMDISKAQFI 1010



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 75/104 (72%)

Query: 1105 ALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLN 1164
            +L ++ E+    +  ++    D  +L+K K   +LA PGEPVGLLA+QS+GEPSTQMTLN
Sbjct: 1143 SLTEHLEQLVQTYNKSQTPLHDMDELMKVKNSYALAAPGEPVGLLAAQSIGEPSTQMTLN 1202

Query: 1165 TFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKT 1208
            TFH AGRGEMNVTLGIPRL+EIL +AS+ IKTP +  P    K+
Sbjct: 1203 TFHFAGRGEMNVTLGIPRLREILMLASQRIKTPSMEIPFRAFKS 1246



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC +    C GHFGHI++ VPV+NP     +Y LL+  C  C   +           +
Sbjct: 65  CATCVKDMNQCEGHFGHIEICVPVFNPFFVKTVYNLLRICCTDCFRLQIHDSMKSLLELQ 124

Query: 61  LELIIKGDIIAAKSLDL 77
           L+L+  G I+ A+ L++
Sbjct: 125 LQLVDAGYIVEAEELEV 141


>gi|45181577|gb|AAS55439.1| RNA polymerase I largest subunit [Ephedra viridis]
          Length = 534

 Score =  530 bits (1366), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 299/616 (48%), Positives = 381/616 (61%), Gaps = 88/616 (14%)

Query: 549  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
            MNVHFPQDE+SRAEAY+IVNAN QY  P++GDP+R LIQDHIVSA LLTK+DTFL+++E+
Sbjct: 1    MNVHFPQDEISRAEAYSIVNANKQYTVPTSGDPIRGLIQDHIVSATLLTKRDTFLSKEEY 60

Query: 609  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
              L+YS+ +SS    S       +V I + +   + L PA+WKP PLWTGKQVIT +L++
Sbjct: 61   QNLVYSACISSFSGTSHGCNSQSKVAICKEDSLFVSLPPAVWKPVPLWTGKQVITTILDY 120

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
            ITR          G LP                                 K G+   +  
Sbjct: 121  ITR----------GSLP-----------------------------FSMKKLGRVPAIYW 141

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAG 788
            G+   E E               ++I  N+LV GVIDKAQF  YGLVH V ELYG++ AG
Sbjct: 142  GRESWELE---------------VVIQNNELVCGVIDKAQFGKYGLVHVVHELYGADAAG 186

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
             LLS  SRLFT F+Q                 E ER+  L  ++E G + H + L  +D 
Sbjct: 187  RLLSVFSRLFTCFMQA----------------EIERREKLAKAKEEGDKAHAQFLG-KDA 229

Query: 849  AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNW 908
             EID  K++ EIEK +R  G+++ A  D  M+  LNK TS  V   +  +GL KP  KN 
Sbjct: 230  KEIDLGKIEEEIEKILRSKGESSSARLDRLMSGALNKITSE-VNGSVFPDGLRKPFLKNC 288

Query: 909  ISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIID 968
            +SLMT +GAKG  VNF QISS LGQQELEGKRVPRM+SGKTLP F PWD  PRAGGFI D
Sbjct: 289  LSLMTLTGAKGGMVNFTQISSLLGQQELEGKRVPRMISGKTLPCFSPWDIQPRAGGFISD 348

Query: 969  RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGS 1028
            RFLTGLRPQEYYFHCMAGR+GLVDTAVKTSRSGYLQRCLIKNLECL + YD++VRD+DGS
Sbjct: 349  RFLTGLRPQEYYFHCMAGRDGLVDTAVKTSRSGYLQRCLIKNLECLTVFYDHTVRDSDGS 408

Query: 1029 IVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKC 1088
            ++QFCYGEDGVDV ++S ++ F+ LAA ++   +   K C +  + F    ++++  K  
Sbjct: 409  VIQFCYGEDGVDVTKSSCLTGFEILAANQKLLSQ---KLCKEKFNDFT---DRKLARKSS 462

Query: 1089 SGQLDASNAYIMELPDALKDNAEKFADKFLSNE------MAKQDFLKLVKHKFVLSLAQP 1142
            S    AS     ++P+ LK+ A K+  K    E         + FL L++ K++ SLA+P
Sbjct: 463  S----ASVCDATDIPEKLKEKAHKYIYKLSEKEKHLWKLRKPKKFLDLLRVKYISSLAEP 518

Query: 1143 GEPVGLLASQSVGEPS 1158
            GE VG++A QSVGEPS
Sbjct: 519  GEAVGVVAGQSVGEPS 534


>gi|341881185|gb|EGT37120.1| hypothetical protein CAEBREN_30567 [Caenorhabditis brenneri]
          Length = 1591

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 317/807 (39%), Positives = 452/807 (56%), Gaps = 117/807 (14%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL-ANAYVNQPDNA------ 334
             FL  VLVPP KFR       +  E PQT+ L +VL+A   + A + + + DN+      
Sbjct: 280  LFLERVLVPPKKFRPIRMFKGAQYEDPQTLNLRRVLEATETISALSLMMKGDNSAKLKEL 339

Query: 335  -------KVIVAR----WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLM 383
                   K I A+    ++ LQ   N +FD     G+RD  +GI Q+LEKK+GLFR  +M
Sbjct: 340  IANRVRGKTIDAQIHDAYLQLQLRCNAIFDQDLNRGERDSIAGIKQILEKKQGLFRMHMM 399

Query: 384  GKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPG 443
            GKRVN+ACRSVI+PDPYL ++EIGIP  FA +LT+ E V  +N+ ++++ +  G   HPG
Sbjct: 400  GKRVNFACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNMKEMKELLRKGPHQHPG 459

Query: 444  ATHYLDKLSTMRL----PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQD 499
            A  Y++      +    P   K R+ + R L+ +    V+         +   V RH+++
Sbjct: 460  ANFYVEPSGKKTMLGDRPEEVKRRMHLARTLNAATTESVR---------QTPKVLRHMKN 510

Query: 500  GDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVS 559
            GD++++NRQP+LHKPSIM H  RVL G++ LRM+YA C  YNADFDGDEMN H  Q  ++
Sbjct: 511  GDMIMMNRQPSLHKPSIMGHRARVLTGQRALRMNYAPCKAYNADFDGDEMNGHLVQSHIA 570

Query: 560  RAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSS 619
            + E   I N  + ++ P +  PL  LIQDH+VS  LLT +D FLN+++F  L+ +S    
Sbjct: 571  QTEVREIANVGSNFLVPKDATPLLGLIQDHVVSGVLLTLRDRFLNKEDFMHLVLASFAQY 630

Query: 620  SGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL-NHITRGRPPFVV 678
            S          +R+       E+ P  P I  P+ LWTGKQV++ ++ N I  G+P   +
Sbjct: 631  S----------KRI-------EIPP--PTILYPKRLWTGKQVVSTIVKNCIPEGKPLINL 671

Query: 679  ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 738
            +   K P   +                                    +V G         
Sbjct: 672  DGKAKTPLSCW------------------------------------IVPG--------- 686

Query: 739  KNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSR 796
              K+ + ++SE  ++  + +L+ GV+DKA F    +GL H   ELYG      LLS  SR
Sbjct: 687  -FKAPDFDMSESHVVFRQGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQLLSCFSR 745

Query: 797  LFTVFLQM-----------HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALEL 845
            LFT +LQ+           HGFT GV D+L+L++ + +RK+ +  S  IG +V   A  L
Sbjct: 746  LFTTYLQVGFEEISYTFFFHGFTLGVADILVLQEADAKRKDAVMESRTIGDQVVKTAFGL 805

Query: 846  EDGAEIDPIKLKSEIEKAM---RGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLK 902
             + A   P ++K  +       RG G   V   D  M   + K+ + ++    +  GLL+
Sbjct: 806  SENA--TPAEIKRTLAATYCNPRGQG-TDVKMLDFGMKQGIAKY-NDAITKSCVPTGLLR 861

Query: 903  PTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRA 962
               +N + LM  SGAKGS VN  QIS  LGQ ELEGKR+   V+G+TLPSF  +D +PRA
Sbjct: 862  KFPENALQLMIQSGAKGSAVNAIQISGCLGQIELEGKRMAVTVAGRTLPSFRCFDPSPRA 921

Query: 963  GGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSV 1022
            GG+I  RFLTG+ PQE +FH MAGREGL+DTAVKTSRSGYLQRC+IK+LE +++ YD +V
Sbjct: 922  GGYIDQRFLTGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTV 981

Query: 1023 RDADGSIVQFCYGEDGVDVHQTSFISK 1049
            RD DGS++QF YGEDG+D  + +F++K
Sbjct: 982  RDHDGSVIQFRYGEDGMDTTKATFLNK 1008



 Score = 53.9 bits (128), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 25/37 (67%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLL 37
           C TC Q +  CPGH GHI L VPV+NPLLF   + ++
Sbjct: 67  CLTCNQYERHCPGHMGHIQLSVPVFNPLLFQFTFNVI 103


>gi|393911384|gb|EFO26842.2| hypothetical protein LOAG_01639 [Loa loa]
          Length = 1744

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 328/837 (39%), Positives = 459/837 (54%), Gaps = 102/837 (12%)

Query: 245  SDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSV 304
            ++V++    LW+N+  L   +  +      K     + F   VLVPP K+R         
Sbjct: 330  AEVREHFRILWQNDGPLLRKLFPVFDSKDDKHCPLDVLFCEAVLVPPTKYRPVRIFKGDK 389

Query: 305  MEHPQTVLLSKVLQAN-----IYLA------NAYVN--------QPDNAKVIVARWMNLQ 345
             E+PQ+V L K+L+A+     I LA       A +N        Q   AK+  A ++ LQ
Sbjct: 390  FENPQSVNLRKLLEASETIRAIRLALSGNNEKALLNLVSENVLGQTMQAKMHNA-YLTLQ 448

Query: 346  QSVNVLFDGK--NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
            Q +  +FD         R    GI Q+LEKK+GLFR  +MGKRVN+ACRSVI+PDPYL +
Sbjct: 449  QRMGAIFDQDLDKWTDVRVQIPGIKQILEKKQGLFRMNMMGKRVNFACRSVITPDPYLDI 508

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMR 463
            +EIGIP  FA +LT  E V   N+ +LR  I NG + HPGA +++ K      P      
Sbjct: 509  DEIGIPEPFAKKLTVTETVNAMNLARLRKMIKNGPDFHPGA-NFIQK------PGRYTQV 561

Query: 464  ISIGRKLDTSRGAI-VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
            +SI +  + +  A  +QPG  S   +  + V RHL  GD++L+NRQP+LHKPS+M H  R
Sbjct: 562  LSINKANERNAAAKRLQPGSSSQLGYPLQ-VLRHLDKGDLMLMNRQPSLHKPSMMGHRAR 620

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            VLK ++ LRM+YA C  YNADFDGDEMN HF Q+ +++ E   IVN  + ++ P +G PL
Sbjct: 621  VLKSQQALRMNYAPCKAYNADFDGDEMNGHFVQNRIAQTELAEIVNVGSNFLVPKDGTPL 680

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
              LIQDH+VS  LLT +  F N+++F  L+ S+   ++          QR++I       
Sbjct: 681  LGLIQDHVVSGVLLTIRGRFFNKEDFMHLVLSAFAETT----------QRLVIPP----- 725

Query: 643  LPLLPAIWKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDR 701
                P + KP+ LW+GKQ+I+ VL N I   +P   +    K P   +K           
Sbjct: 726  ----PTMLKPQVLWSGKQIISTVLRNCIPLHKPLLNIRSKAKTPLSCWK----------- 770

Query: 702  KKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVR 761
                                     VE  P          + +  +SE +++  + +L+ 
Sbjct: 771  -------------------------VEDHP----------APKFSMSESEVIFRQAELLV 795

Query: 762  GVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKD 819
            GV+DK  +    YGL+H   +LYG   A  +LS  SRLFT  LQ HGFT GV D+LI K+
Sbjct: 796  GVLDKQHYGSTQYGLIHCCWDLYGHRYATRILSCFSRLFTTHLQYHGFTLGVADILIRKE 855

Query: 820  KERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKM 879
             +++RK  +    + G  V  E   L++ A+   IK           G    +   D KM
Sbjct: 856  ADKQRKKEIKALRKCGDTVVRECFNLDENADESEIKYVMASAYCNPKGEQNHIQQLDYKM 915

Query: 880  TSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGK 939
               LN+  +  + +  +  GL+K   +N + LM   GAKG+ VN  QIS  LGQ ELEG 
Sbjct: 916  KETLNRF-NERINSACMPAGLIKLFPQNALQLMILCGAKGTMVNSVQISCELGQIELEGH 974

Query: 940  RVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSR 999
            R P   +G+TLPSF  +D +PRAGGF+  RFLTG+ PQE +FH MAGREGL+DTAVKTSR
Sbjct: 975  RPPMTSAGRTLPSFRSFDTSPRAGGFVDQRFLTGINPQELFFHTMAGREGLIDTAVKTSR 1034

Query: 1000 SGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS--KFDALA 1054
            SGYLQRC++K+LE L   YD +VRD DGSI+QF YGEDG+DV +++F++  +FD LA
Sbjct: 1035 SGYLQRCIVKHLEGLVAQYDSTVRDHDGSIIQFRYGEDGMDVCKSTFMNSEQFDFLA 1091



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 73/117 (62%), Gaps = 5/117 (4%)

Query: 1086 KKCSGQLDAS---NAYIMELPDALKDNAEKF--ADKFLSNEMAKQDFLKLVKHKFVLSLA 1140
            K C   +D     N  +  LP  L D+ +++         +++   F K +  K +    
Sbjct: 1178 KACPAAVDEKMNPNRCLGALPQKLLDDIDEYIGMKSVTGADISLDTFRKSLYWKGMRCRV 1237

Query: 1141 QPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTP 1197
             PGE VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL  AS DIKTP
Sbjct: 1238 DPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASNDIKTP 1294



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 31/50 (62%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
           C+TC Q+   CPGH GHI L VPV++PLLF   ++L+   C  CH    +
Sbjct: 67  CETCHQQGTYCPGHMGHIQLDVPVFSPLLFGFTFSLMNGTCVQCHRLTCN 116


>gi|339237703|ref|XP_003380406.1| RNA polymerase Rpb1, domain 5 superfamily [Trichinella spiralis]
 gi|316976752|gb|EFV59978.1| RNA polymerase Rpb1, domain 5 superfamily [Trichinella spiralis]
          Length = 1728

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 322/820 (39%), Positives = 447/820 (54%), Gaps = 144/820 (17%)

Query: 281  IFFLGVVLVPPIKFR----LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQ------ 330
            + FL  +LV P KFR    L  +  D+ +      ++   L    ++  A  ++      
Sbjct: 297  LLFLTHLLVMPPKFRPIVELAGRKCDNPISQIYRNIIEDCLSIKRFMQKATADKWQTEGG 356

Query: 331  ------PDNAKVIVARWMNLQQSVNVLFDGKN----AAGQRDM--ASGICQLLEKKEGLF 378
                   D+ + I    + +Q  VN L+D       A+G      A G+ Q+LEKKEGLF
Sbjct: 357  ESGDAVQDSEEQIQTLCLTMQSHVNELYDNSETSRIASGLTVQLNAKGLRQVLEKKEGLF 416

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRVN+A RSVI+PDPY++V+ +GIP  FA RL++PE V   N   + +++++G 
Sbjct: 417  RKHMMGKRVNFAARSVIAPDPYMSVDGVGIPEVFAKRLSFPEAVFSANATAMSEAVLHGP 476

Query: 439  EIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEF---EGKMVYR 495
            ++HPGA   +D+         + M+I +    +  R  + +    +   F     K V R
Sbjct: 477  DVHPGANFIIDE---------RGMKIYLNAGKEIERSGMAKRLLQTSQRFGIAYPKKVCR 527

Query: 496  HLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQ 555
            HL++ D VL+NRQPTLHKPSIMAH V+VLK ++TLR++YA C TYNADFDGDEMN HFPQ
Sbjct: 528  HLKENDFVLLNRQPTLHKPSIMAHKVKVLKNQRTLRLNYATCKTYNADFDGDEMNAHFPQ 587

Query: 556  DEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSS 615
            +E++RAE   I +   Q++ P +G P+  LIQDH+VS  +LT +D FL +++F  LL S+
Sbjct: 588  NEIARAECSEIADVARQFLVPKDGKPIAGLIQDHVVSGFMLTMRDKFLTKEDFNYLLLSA 647

Query: 616  GVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV-LNHITRGRP 674
              S          P ++V          P  P I+KP   WTGKQV+T + LN I    P
Sbjct: 648  FPS-------VEHPWRQV----------P--PTIFKPVRRWTGKQVVTTILLNVIPSHLP 688

Query: 675  PFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEE 734
            P                                     N + K K+  K   V GK    
Sbjct: 689  PI------------------------------------NLVTKAKTSIKNWTVPGK---- 708

Query: 735  KEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLS 792
                  ++   ELSE  ++I   +L+ GV+DKAQ   + YGLVH + ELYG   A  LLS
Sbjct: 709  ------RNPIFELSESNVVICSGELLCGVLDKAQMGASPYGLVHCIFELYGPAVAAKLLS 762

Query: 793  ALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID 852
              SRLFT +LQM GFT GV+D+++ +  + +R+  L   +  G     EAL L+ G E D
Sbjct: 763  CFSRLFTTYLQMRGFTLGVEDIMLTRKADSKRRKLLSTVDCCGSEAVREALALDVGIEDD 822

Query: 853  PIKLKSE-------------IEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEG 899
             +KL  E             +E+  R   D        K   Q NK             G
Sbjct: 823  EVKLILEKMHFKNEKESLLRVEQCFRQATD--------KFNDQANK--------VCFPNG 866

Query: 900  LLKPTGKNWISLMTTSGAKGS-------------KVNFQQISSHLGQQELEGKRVPRMVS 946
            LLK    N +SLM  +GAKG+             +VNF Q+S  LGQ +LEG+RV   +S
Sbjct: 867  LLKAFPDNGLSLMIETGAKGTSVSKEYISSYNTMRVNFFQMSCMLGQVDLEGQRVKVGMS 926

Query: 947  GKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRC 1006
            G+TLP F  +D  PRAGGF+  RFL+G+RPQE++FHC+AGREGL+DTAVKTSRSGYLQRC
Sbjct: 927  GRTLPCFQRYDTKPRAGGFVSQRFLSGVRPQEFFFHCLAGREGLIDTAVKTSRSGYLQRC 986

Query: 1007 LIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +IK++E +  +YD +VRDADGSI+QF YGEDG DV ++ F
Sbjct: 987  IIKHMEGIVANYDLTVRDADGSIIQFYYGEDGFDVTKSQF 1026



 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 67/99 (67%), Gaps = 5/99 (5%)

Query: 1105 ALKDNAEKFADKFLSNEMAKQD-----FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPST 1159
            AL D   +  D F+    A+ D     F KL+K + + SL +PGE VGLLA+QS+GEPST
Sbjct: 1145 ALSDKFLEQLDNFIQQRQARVDESVHKFEKLMKLRGMRSLVEPGETVGLLAAQSIGEPST 1204

Query: 1160 QMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
            QMTLNTFH AG GEMNVTLGIPRL+EIL   S  I TP 
Sbjct: 1205 QMTLNTFHFAGCGEMNVTLGIPRLREILISGSATISTPT 1243



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 3/96 (3%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCV-- 58
           C TC      CPGH+GHI L +P++NPLLF++ Y L++  CF CH    +  EV   +  
Sbjct: 79  CATCSFTGAQCPGHYGHIRLPLPMFNPLLFDITYQLIRGTCFVCHRLFVADNEVALKIFF 138

Query: 59  RKLELIIKGDI-IAAKSLDLDLPSESSNPEDSDVSN 93
            ++E + +G++ +A++  D+     S +P   +++N
Sbjct: 139 AQMEALDEGNLALASEIADISTECVSDSPNLQNLNN 174


>gi|308457540|ref|XP_003091144.1| hypothetical protein CRE_15786 [Caenorhabditis remanei]
 gi|308258145|gb|EFP02098.1| hypothetical protein CRE_15786 [Caenorhabditis remanei]
          Length = 1245

 Score =  524 bits (1350), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 314/809 (38%), Positives = 440/809 (54%), Gaps = 117/809 (14%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL------------------ 323
             FL  +LVPP KFR       +  E PQT+ L KVL+A   +                  
Sbjct: 363  LFLERILVPPKKFRPIRMFKGAQYEDPQTLNLRKVLEATETISAISLIMKGDKSAQLKEL 422

Query: 324  -ANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKL 382
             AN    +  NA++  A ++ LQ   N +FD     G RD  +GI Q+LEKK+GLFR  +
Sbjct: 423  VANRVRGKTINAQMHDA-YLQLQLRANAIFDQDLNRGDRDSIAGIKQILEKKQGLFRMHM 481

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
            MGKRVN+ACRSVI+PDPYL ++EIGIP  FA +LT+ E V  +N+ ++++ +  G   HP
Sbjct: 482  MGKRVNFACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNMKEMKELLKKGPHQHP 541

Query: 443  GATHYLDKLSTMRL----PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQ 498
            GA  +++      +    P  KK R  + + L+ +    V+         +   V RH++
Sbjct: 542  GANFFVEPSGKKTMLGDKPDEKKRRYHLAKTLNAATTESVR---------QTPKVLRHMK 592

Query: 499  DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
            +GD++++NRQP+LHKPSIM H  RVL G++ LRM+YA C  YNADFDGDEMN H  Q  +
Sbjct: 593  NGDMIMMNRQPSLHKPSIMGHRARVLTGQRALRMNYAPCKAYNADFDGDEMNGHLVQSHI 652

Query: 559  SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
            ++ E   I N  + ++ P +  PL  LIQDH+VS  LLT +D FLN+++F  L+ SS   
Sbjct: 653  AQTEVREIANVGSNFLVPKDATPLLGLIQDHVVSGVLLTLRDRFLNKEDFMHLVLSSFAQ 712

Query: 619  SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL-NHITRGRPPFV 677
             S          +R+       E+ P  P I  P+ LWTGKQV+T ++ N I  G+P   
Sbjct: 713  YS----------KRI-------EIPP--PTILYPKRLWTGKQVVTTIVKNCIPEGKPLIN 753

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEA 737
            ++   K P   +                                         PG  + +
Sbjct: 754  LDGKAKTPLSCWTV---------------------------------------PGFNQPS 774

Query: 738  EKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALS 795
                    ++SE  ++  + +L+ GV+DKA F    +GL H   ELYG      LLS  S
Sbjct: 775  -------FDMSESHVVFRQGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQLLSCFS 827

Query: 796  RLFTVFLQM---------------HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHL 840
            RLFT +LQ+               HGFT GV D+L++K+ + +RK  +  S  IG +V  
Sbjct: 828  RLFTTYLQVELIKSIASPYSFFQYHGFTLGVADILVVKEADGKRKEAVMESRTIGNQVVK 887

Query: 841  EALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGL 900
             A  L D A    IK           G    V   D  M   + K+ + ++    +  GL
Sbjct: 888  TAFGLPDTATPTEIKRTLAATYCNPRGQGTDVKMLDFGMKQGIAKY-NDAITKSCVPTGL 946

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
            L+   +N + LM  SGAKGS VN  QIS  LGQ ELEGKR+   ++G+TLPSF  +D +P
Sbjct: 947  LRLFPQNALQLMIQSGAKGSAVNAIQISGCLGQIELEGKRMAVTIAGRTLPSFRCFDPSP 1006

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
            RAGG+I  RFLTG+ PQE +FH MAGREGL+DTAVKTSRSGYLQRC+IK+LE +++ YD 
Sbjct: 1007 RAGGYIDQRFLTGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDS 1066

Query: 1021 SVRDADGSIVQFCYGEDGVDVHQTSFISK 1049
            +VRD DGS++QF YGEDG+D  + +F++K
Sbjct: 1067 TVRDHDGSVIQFRYGEDGMDTTKATFLNK 1095



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 29/47 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF 47
           C TC Q +  CPGH GHI L VPV+NPLLF   Y LLK  C  CH  
Sbjct: 82  CLTCNQYERHCPGHMGHIQLAVPVFNPLLFQFTYNLLKGSCVHCHRL 128


>gi|328713218|ref|XP_001942957.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like
            [Acyrthosiphon pisum]
          Length = 1646

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 328/856 (38%), Positives = 458/856 (53%), Gaps = 132/856 (15%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGH--SIFFLGVVLVPPIKFRLPSK 299
            L P+D+++ + +LW  E     FIS +     G K  +   + F+  +LV P   R    
Sbjct: 240  LFPADIREHMRQLWVKEKH---FISALLPVLAGLKIEYPTDVCFMTEILVTPSNLRPNLM 296

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQ---------------------PDNAKVIV 338
                ++E P+      +L+    +   ++ Q                      D+ + + 
Sbjct: 297  VKGKLVESPRNSTYKSILREAKVIQYIWLLQDQKEGQEISSEITELVNDSQGKDSIEKVQ 356

Query: 339  ARWMNLQQSVNVLFDGK--NAAGQRDMAS--GICQLLEKKEGLFRQKLMGKRVNYACRSV 394
                NLQ  V+ L DG    +   +D A   G+ QLLEKK G+ RQ +MGKRV+Y  RSV
Sbjct: 357  IGMHNLQMCVDALLDGNLFRSYNNKDQAPRIGLKQLLEKKSGIIRQNMMGKRVDYFARSV 416

Query: 395  ISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM 454
            I+PDPYL  +EIGIP  FA +LTYP  VT WN   L   ++NG   +PGA         +
Sbjct: 417  ITPDPYLDTDEIGIPVEFAKKLTYPVAVTDWNNKGLHGVVLNGPNHYPGANMIETDAGIV 476

Query: 455  RL--PPNKKMRISIGRKL----DTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQ 508
            +     NK  R ++ + L      SRG               ++V+RH+ DGD++LVNRQ
Sbjct: 477  KWLSATNKSRREALSKTLFYKGPNSRGP--------------QIVHRHVIDGDMMLVNRQ 522

Query: 509  PTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVN 568
            P+LHKPSIMAH V+VLKGEKTLR+HYANC  YNADFDGDEMN H PQ E+++ EA  I +
Sbjct: 523  PSLHKPSIMAHRVKVLKGEKTLRLHYANCKAYNADFDGDEMNAHLPQSELAKCEAKEIAS 582

Query: 569  ANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGK 628
            A  QY+ P +G PL  LIQDHI+S+  +T +  F  R E+   +Y +      L SF   
Sbjct: 583  AVYQYLVPRDGTPLSGLIQDHIISSVRMTVRGHFFTRREYMHFVYQA------LSSF--- 633

Query: 629  PGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI-TAVLNHITRGRPPFVVERGGKLPQD 687
                      ++ +  + PAI KP  LW+GKQ+I T ++N     +  ++          
Sbjct: 634  ----------DRAIKTVPPAIIKPVMLWSGKQIISTLIINLTPLNQKTYI---------- 673

Query: 688  FFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKEL 747
                                     N M K K  +K       P        N      L
Sbjct: 674  -------------------------NLMSKSKLEQK---CWRNPN-------NYEYPDLL 698

Query: 748  SEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH 805
            SE   ++   +L+ G++DK     + Y LVH   ELYG   +  LLSA S+LFTV+LQ  
Sbjct: 699  SEFNFIVRNGNLLSGILDKNHIGASTYSLVHCFYELYGGKYSAQLLSAFSKLFTVYLQCD 758

Query: 806  GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED-GAEIDPIKLKSEIEKAM 864
             FT GV+D+L+ +  +  R+  +  S+  G     E+L +E  G +   IKL     K+ 
Sbjct: 759  AFTLGVEDILVTEKADHLRQTAIDESKTAGTLAAQESLGIEYMGEDAMNIKLAESYSKS- 817

Query: 865  RGGGDAAVAYFDMKMTSQLNKHT---SSSVINELLSEGLLKPTGKNWISLMTTSGAKGSK 921
                    ++F + +     KH    ++ +    + +GLL+P   N + LM  SGAKGS 
Sbjct: 818  --------SHFPVLVDRNYKKHLQPFTNKITRACIPKGLLQPFPNNNLQLMVQSGAKGST 869

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            VN  QIS  LGQ ELEGKR P M+SG+TLPSF P+D  P+AGGFI  RF+TG++PQE++F
Sbjct: 870  VNTIQISCCLGQIELEGKRPPMMISGRTLPSFPPFDTLPKAGGFIGSRFMTGIQPQEFFF 929

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV 1041
            HCMAGREGL+DTAVKTSRSGYLQRCL+K+LE L ++YD +VRD++GSIVQ+ YGEDG++V
Sbjct: 930  HCMAGREGLIDTAVKTSRSGYLQRCLVKHLESLIVNYDMTVRDSNGSIVQYLYGEDGLEV 989

Query: 1042 HQTSFI--SKFDALAA 1055
             ++SF    +FD LA 
Sbjct: 990  TKSSFFKEKQFDFLAG 1005



 Score =  103 bits (256), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 64/85 (75%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            N+  KQ   + ++ K + + A  GEPVG +A+QSVGEPSTQMTLNTFH AGRGEMNVTLG
Sbjct: 1135 NDNDKQIAKESIRLKAMAATAAAGEPVGCIAAQSVGEPSTQMTLNTFHFAGRGEMNVTLG 1194

Query: 1180 IPRLQEILTIASKDIKTPVITCPLL 1204
            IPRL+EIL +A+K IKTP +  P  
Sbjct: 1195 IPRLREILMMATKTIKTPSMEIPFF 1219



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 38/79 (48%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q   LC GHFGHI+L  PV NP+    +  +LK  C  C+     R        +
Sbjct: 67  CSTCNQNSVLCSGHFGHIELPCPVINPIFTTAVIHILKISCLSCYCVLLPRESTILLAAQ 126

Query: 61  LELIIKGDIIAAKSLDLDL 79
           L+L+  G +  A  L  ++
Sbjct: 127 LKLLDNGQLTHAHELATEI 145


>gi|312068462|ref|XP_003137225.1| hypothetical protein LOAG_01639 [Loa loa]
          Length = 1707

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 325/837 (38%), Positives = 452/837 (54%), Gaps = 139/837 (16%)

Query: 245  SDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSV 304
            ++V++    LW+N+  L   +  +      K     + F   VLVPP K+R         
Sbjct: 330  AEVREHFRILWQNDGPLLRKLFPVFDSKDDKHCPLDVLFCEAVLVPPTKYRPVRIFKGDK 389

Query: 305  MEHPQTVLLSKVLQAN-----IYLA------NAYVN--------QPDNAKVIVARWMNLQ 345
             E+PQ+V L K+L+A+     I LA       A +N        Q   AK+  A ++ LQ
Sbjct: 390  FENPQSVNLRKLLEASETIRAIRLALSGNNEKALLNLVSENVLGQTMQAKMHNA-YLTLQ 448

Query: 346  QSVNVLFDGK--NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
            Q +  +FD         R    GI Q+LEKK+GLFR  +MGKRVN+ACRSVI+PDPYL +
Sbjct: 449  QRMGAIFDQDLDKWTDVRVQIPGIKQILEKKQGLFRMNMMGKRVNFACRSVITPDPYLDI 508

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMR 463
            +EIGIP  FA +LT  E V   N+ +LR  I NG + HPGA +++ K      P      
Sbjct: 509  DEIGIPEPFAKKLTVTETVNAMNLARLRKMIKNGPDFHPGA-NFIQK------PGRYTQV 561

Query: 464  ISIGRKLDTSRGAI-VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
            +SI +  + +  A  +QPG  S   +  + V RHL  GD++L+NRQP+LHKPS+M H  R
Sbjct: 562  LSINKANERNAAAKRLQPGSSSQLGYPLQ-VLRHLDKGDLMLMNRQPSLHKPSMMGHRAR 620

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            VLK ++ LRM+YA C  YNADFDGDEMN HF Q+ +++ E   IVN  + ++ P +G PL
Sbjct: 621  VLKSQQALRMNYAPCKAYNADFDGDEMNGHFVQNRIAQTELAEIVNVGSNFLVPKDGTPL 680

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
              LIQDH+VS  LLT +  F N+++F  L+ S+   ++          QR++I       
Sbjct: 681  LGLIQDHVVSGVLLTIRGRFFNKEDFMHLVLSAFAETT----------QRLVIPP----- 725

Query: 643  LPLLPAIWKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDR 701
                P + KP+ LW+GKQ+I+ VL N I   +P   +    K P   +K           
Sbjct: 726  ----PTMLKPQVLWSGKQIISTVLRNCIPLHKPLLNIRSKAKTPLSCWK----------- 770

Query: 702  KKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVR 761
                                     VE  P          + +  +SE +++  + +L+ 
Sbjct: 771  -------------------------VEDHP----------APKFSMSESEVIFRQAELLV 795

Query: 762  GVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKD 819
            GV+DK  +    YGL+H   +LYG   A  +LS  SRLFT  LQ HGFT GV D+LI K+
Sbjct: 796  GVLDKQHYGSTQYGLIHCCWDLYGHRYATRILSCFSRLFTTHLQYHGFTLGVADILIRKE 855

Query: 820  KERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKM 879
             +++RK  +                                 KA+R  GD  V     + 
Sbjct: 856  ADKQRKKEI---------------------------------KALRKCGDTVV-----RE 877

Query: 880  TSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGK 939
               L+++   S IN  +  GL+K   +N + LM   GAKG+ VN  QIS  LGQ ELEG 
Sbjct: 878  CFNLDENADESEINACMPAGLIKLFPQNALQLMILCGAKGTMVNSVQISCELGQIELEGH 937

Query: 940  RVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSR 999
            R P   +G+TLPSF  +D +PRAGGF+  RFLTG+ PQE +FH MAGREGL+DTAVKTSR
Sbjct: 938  RPPMTSAGRTLPSFRSFDTSPRAGGFVDQRFLTGINPQELFFHTMAGREGLIDTAVKTSR 997

Query: 1000 SGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS--KFDALA 1054
            SGYLQRC++K+LE L   YD +VRD DGSI+QF YGEDG+DV +++F++  +FD LA
Sbjct: 998  SGYLQRCIVKHLEGLVAQYDSTVRDHDGSIIQFRYGEDGMDVCKSTFMNSEQFDFLA 1054



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 73/117 (62%), Gaps = 5/117 (4%)

Query: 1086 KKCSGQLDAS---NAYIMELPDALKDNAEKF--ADKFLSNEMAKQDFLKLVKHKFVLSLA 1140
            K C   +D     N  +  LP  L D+ +++         +++   F K +  K +    
Sbjct: 1141 KACPAAVDEKMNPNRCLGALPQKLLDDIDEYIGMKSVTGADISLDTFRKSLYWKGMRCRV 1200

Query: 1141 QPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTP 1197
             PGE VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL  AS DIKTP
Sbjct: 1201 DPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASNDIKTP 1257



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 31/50 (62%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
           C+TC Q+   CPGH GHI L VPV++PLLF   ++L+   C  CH    +
Sbjct: 67  CETCHQQGTYCPGHMGHIQLDVPVFSPLLFGFTFSLMNGTCVQCHRLTCN 116


>gi|26352734|dbj|BAC39997.1| unnamed protein product [Mus musculus]
          Length = 1012

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 346/1028 (33%), Positives = 509/1028 (49%), Gaps = 165/1028 (16%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q    C GH GHIDL + VYNP LF+ LY LL+  C  CH     R  +   + +
Sbjct: 86  CATCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQ 145

Query: 61  LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
           L ++  G + A   L+  L     E+ +P   ++  +                    +E+
Sbjct: 146 LRVLEVGALQAVYELERILSMFLEETGDPSAFEIQEEL-------------------EEY 186

Query: 118 TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
           TS      K+     L  + T   N C++++  +++  F   HM     PH         
Sbjct: 187 TS------KILQNNLLGSQGTHVKNVCESRSKLVAQ--FWKTHMAAKQCPH--------- 229

Query: 175 GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
            C  G +    E    L            ++  T     D       +G    P G  K 
Sbjct: 230 -CKTGRSVVRKEHNSKL----------IITYPATVHKKSDQEGTELPEGVPEAP-GIDKA 277

Query: 235 KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
           +    G L PS  ++ +  +W+NE F L    S +   G       S+FFL  ++VPP +
Sbjct: 278 QMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 337

Query: 294 FRLPSKGGDSVMEHPQTVLLSKVLQANIY-----------------LANAYVNQPDNAKV 336
           +R  ++ GD +  + QTV L  V++  +                  +    +++ +++ V
Sbjct: 338 YRPVNRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDSSV 397

Query: 337 IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
            + R                  W+ LQ  VN++FD +      +   GI Q+LEKKEGLF
Sbjct: 398 AIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMDKLMLEKYPGIRQILEKKEGLF 457

Query: 379 RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
           R+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++ING 
Sbjct: 458 RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 517

Query: 439 EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
            +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V RH
Sbjct: 518 NVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLT-------PATGAPKPQGTKVVCRH 570

Query: 497 LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
           +++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN HFPQ 
Sbjct: 571 VKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 630

Query: 557 EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
           E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y   
Sbjct: 631 ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYR-- 688

Query: 617 VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                    T K G+  L            PAI KP PLWTGKQV++ +L +I       
Sbjct: 689 -------GLTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI------- 724

Query: 677 VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                  +P+D+                     +  N   K K G K  V E KP    +
Sbjct: 725 -------IPEDY---------------------APLNLSGKAKIGSKAWVKE-KPRPIPD 755

Query: 737 AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
            + +      + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G +L+ L
Sbjct: 756 FDPD-----SMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCL 810

Query: 795 SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
           +RLFT +LQ++ GFT GV+D+L+  + +  R+  +  S + G +    AL L + A  D 
Sbjct: 811 ARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQCGPQAVKAALSLPETASCDE 870

Query: 854 IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
           I+ K +     +   D  +   DMK   ++N H S+ +    +  GL +   +N + +M 
Sbjct: 871 IQGKWQDAHLSKDQRDFNM--IDMKFKEEVN-HYSNEINKACMPLGLHRQFPENNLQMMV 927

Query: 914 TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
            SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+  RFLTG
Sbjct: 928 QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 987

Query: 974 LRPQEYYF 981
           +RP    F
Sbjct: 988 IRPPVCIF 995


>gi|47214109|emb|CAG00674.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1949

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 322/865 (37%), Positives = 448/865 (51%), Gaps = 165/865 (19%)

Query: 245  SDVKDIIEKLWENEFELCSF----ISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKG 300
            S  ++   KLWENE     F    + +M  Q         +FFL +++VPP ++R  ++ 
Sbjct: 253  STAREHTNKLWENEGFFLKFLFSGVEEMVSQQGVNYCYSDLFFLEMLVVPPCRYRPINRL 312

Query: 301  GDSVMEHPQTVLLSKVLQ------------------ANIYLANAYVNQ----------PD 332
            GD +  + QTV L  V++                    + + N  + +          PD
Sbjct: 313  GDQMFTNGQTVNLQAVMKDCGTIRKLMALIAEEKTAVEVEVTNKVLKKEEIQGPHTFTPD 372

Query: 333  NAKV-----------IVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQK 381
               +           +   W+ LQ  VN++FD        D   GI              
Sbjct: 373  QTFLSGIPGLTLTDKLYNTWVRLQTRVNIVFDSDMDKLMMDKYPGI-------------- 418

Query: 382  LMGKRVNYACRSVISPD-----PYLAVNEIGIPP-YFALRLTYPERVTPWNVVKLRDSII 435
                      R V+ PD     P+     + +P   FA +LTYP+ VTPWNV +LR +++
Sbjct: 419  ----------RQVLYPDMEQRPPFFMTLALSLPTQVFATKLTYPQPVTPWNVKELRQAVL 468

Query: 436  NGAEIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMV 493
            NG  +HPGA+  +  D   T+    N   R ++ ++L T      +P K        K+V
Sbjct: 469  NGPNVHPGASMVINEDGRKTILSATNMAQRAAVAKQLLT---PCPEPHK-----MPIKIV 520

Query: 494  YRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHF 553
             RH+++GDV+L+NRQPTLH+PSI AH  R+L GEK LRMHYANC  YNADFDGDEMN HF
Sbjct: 521  NRHIKNGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRMHYANCKAYNADFDGDEMNAHF 580

Query: 554  PQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLY 613
            PQ E++RAEAY +V+ ++QY+ P +G PL  LIQDH+VS   +T +  F +R ++ +L+Y
Sbjct: 581  PQSELARAEAYTLVSTDHQYLVPKDGKPLAGLIQDHMVSGTRMTLRGCFFSRAQYTELVY 640

Query: 614  SSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI-TAVLNHITRG 672
                        T K G+  L          L PAI+KP+ LWTGKQ++ T +LN I R 
Sbjct: 641  RG---------LTDKQGRIKL----------LPPAIFKPQQLWTGKQLVSTLLLNVIPRD 681

Query: 673  RPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPG 732
              P  +    K+P    K       +S                               PG
Sbjct: 682  AIPLNLVGKSKIPS---KAWIQVPPRS------------------------------APG 708

Query: 733  EEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTL 790
                      K  ++ + +++I + +L+ GV+DKA +    YGLVH   ELYG  T+G L
Sbjct: 709  ---------YKPDDMCDSQVVICQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGNL 759

Query: 791  LSALSRLFTVFLQM-HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE--- 846
            LS L+RLFT +LQ+  GFT GV+D+L+     R+RK  +  S +IG +       L    
Sbjct: 760  LSCLARLFTAYLQLFRGFTLGVEDILVKPYANRQRKKIIEDSLKIGTKALQATFNLPSTM 819

Query: 847  DGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL----LSEGLLK 902
            D AE+      + +    R          D  M     K  ++ V N++    +  GL  
Sbjct: 820  DRAEVQGRWQDAHLNPDQR----------DFIMVDHKFKEVANQVNNDINKVCMPVGLHT 869

Query: 903  PTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRA 962
                N + LM  SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+D AP A
Sbjct: 870  SFPDNNLQLMVQSGAKGSSVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYDPAPGA 929

Query: 963  GGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSV 1022
            GGF+  RFLTG++PQE++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +V
Sbjct: 930  GGFVSGRFLTGIKPQEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTV 989

Query: 1023 RDADGSIVQFCYGEDGVDVHQTSFI 1047
            RD+DGS++QF YGEDG+DV +T F+
Sbjct: 990  RDSDGSVIQFLYGEDGLDVPKTQFL 1014



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 66/79 (83%)

Query: 1129 KLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILT 1188
            +L+  K+  +L +PG+ VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL 
Sbjct: 1199 QLLNFKWQRALCEPGDAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLKEILM 1258

Query: 1189 IASKDIKTPVITCPLLVGK 1207
            +AS  IKTP+++ P+L  K
Sbjct: 1259 VASSSIKTPMMSIPVLNNK 1277



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 30/54 (55%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREV 54
           C TC Q    CPGH G ++L +PVYNPL F+ LY LL   C  CH     R  +
Sbjct: 64  CSTCCQDFSNCPGHLGRVELPLPVYNPLFFDKLYLLLCGSCLSCHTLTCPRAAI 117


>gi|156379629|ref|XP_001631559.1| predicted protein [Nematostella vectensis]
 gi|156218601|gb|EDO39496.1| predicted protein [Nematostella vectensis]
          Length = 1242

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 281/647 (43%), Positives = 385/647 (59%), Gaps = 81/647 (12%)

Query: 412  FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRIS---IGR 468
            FA +LTYP+ VT WNV +LR ++ING  +HPGA         +     KK+R+S   + +
Sbjct: 3    FAKKLTYPQPVTTWNVKELRQAVINGPLVHPGAI-------LVESEDGKKIRLSETDVNQ 55

Query: 469  KLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK 528
            +   ++  +   G +  +    K VYRH+Q+GDV+L+NRQPTLH+PSIMAH VRVL  EK
Sbjct: 56   RQAIAKRLLTPSGDNKGSHVNCKKVYRHIQNGDVMLLNRQPTLHRPSIMAHKVRVLPSEK 115

Query: 529  TLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQD 588
            T+R+HYANC  YNADFDGDEMN HFPQ+E++RAEAY I + N  Y+ P +G PL  LIQD
Sbjct: 116  TIRLHYANCKAYNADFDGDEMNAHFPQNELARAEAYTIASTNFNYLVPKDGTPLSGLIQD 175

Query: 589  HIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPA 648
            H+VS  L+T +    N+ ++ QL+Y       G  +F  +P            +  L+P 
Sbjct: 176  HMVSGVLMTIRGRMFNKLDYQQLVY-------GALNFKNQP------------IELLMPC 216

Query: 649  IWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
            I KP   W+GKQVI+ +L                           N      ++ N KGK
Sbjct: 217  ILKPTQFWSGKQVISTIL--------------------------LNLIPLGSKRLNLKGK 250

Query: 709  LSKTNKMHKDKSGKKK----EVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVI 764
               + K    +  +++    EV++G                ++SE +++I    L+ GV+
Sbjct: 251  AKISAKNWNTRKPRRQFLDLEVLKGD---------------DMSESEVVIRDGHLLCGVL 295

Query: 765  DKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKER 822
            DKA + +  YGLVH   ELYG   +G LLSAL+R+FT FLQ HGFT GV D+L+ +  ++
Sbjct: 296  DKAHYGNTPYGLVHCCNELYGGVMSGELLSALARVFTSFLQFHGFTLGVKDILVTERADK 355

Query: 823  ERKNHLHGSEEIGKRVHLEALEL-EDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTS 881
             R+  +      GK     A  + ED    D   L++ +++A        +   D+ M  
Sbjct: 356  IRRKLIAKGRVSGKDAATSAFGMPEDCHRSD---LEARMQRAHHNSDGTDMKELDLCMKK 412

Query: 882  QLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRV 941
            + + H   S+    L  GL +    N + LM  SGAKGS VN  QIS  LGQ ELEG+R 
Sbjct: 413  KTD-HYQDSINKACLPLGLYQRFPGNNLQLMVQSGAKGSAVNCMQISCLLGQIELEGRRP 471

Query: 942  PRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSG 1001
            P M+SG++LPSF P+D +PRAGGF+  RFLTG+RPQEY+FHCMAGREGLVDTAVKTSRSG
Sbjct: 472  PIMLSGRSLPSFLPYDTSPRAGGFVDGRFLTGIRPQEYFFHCMAGREGLVDTAVKTSRSG 531

Query: 1002 YLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS 1048
            YLQRCLIK+LE L+++YD +VRD+DGSIVQF YGEDG+D+ +T F+S
Sbjct: 532  YLQRCLIKHLEGLQVAYDLTVRDSDGSIVQFYYGEDGLDILKTKFLS 578



 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 76/111 (68%), Gaps = 6/111 (5%)

Query: 1098 YIMELPD-ALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGE 1156
            YI   PD  L+D+ ++      S  +    F  L+  K + SL  PGE VGLLA+QS+GE
Sbjct: 717  YIRTNPDKCLQDDGDQ-----TSKGVKASKFRSLMYLKTLRSLVDPGEAVGLLAAQSIGE 771

Query: 1157 PSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            PSTQMTLNTFH AGRGEMNVTLGIPR++EIL  AS +IKTP +  PLL GK
Sbjct: 772  PSTQMTLNTFHFAGRGEMNVTLGIPRMREILMTASANIKTPTMDMPLLAGK 822


>gi|301615743|ref|XP_002937328.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Xenopus
            (Silurana) tropicalis]
          Length = 1665

 Score =  497 bits (1279), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 315/853 (36%), Positives = 445/853 (52%), Gaps = 171/853 (20%)

Query: 240  GPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKA-GHSIFFLGVVLVPPIKFRLP 297
            G L P+  K++I+ LWENE F L    S +   G G+ A     FFL +++VPP ++R  
Sbjct: 258  GYLTPNSTKELIKALWENEGFFLQHLFSGIT--GNGESAFTPDTFFLDIIVVPPSRYRPV 315

Query: 298  SKGGDSVMEHPQTVLLSKVL------------------------QANIYLANAYVNQPDN 333
            ++ GD V  +  TV L  VL                        ++ + L    V +  +
Sbjct: 316  NRLGDQVFTNGHTVNLQAVLKDVSMIQKLLAVMAQDQEQMPEVTESGMSLKEGEVTENID 375

Query: 334  AKVIVA------------RWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQK 381
               +               W+ LQ  VN++FD        +   GI Q+LEKKEGLFR+ 
Sbjct: 376  RSFLATLMGQSLTDKLYNSWVRLQSHVNIVFDSDMDKLMTEKYPGIRQVLEKKEGLFRKH 435

Query: 382  LMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIH 441
            +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR +++NG  +H
Sbjct: 436  MMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVMNGPNVH 495

Query: 442  PGATHYL--DKLSTMRLPPNKKMRISIGRKLDT-SRGAIVQPGKDSDNEFEGKMVYRHLQ 498
            PGA+  +  D   T+    N   R ++ ++L T S GA              K+V RH++
Sbjct: 496  PGASMVISEDGSRTILNSSNVSQREAVAKQLLTPSTGA---------QTLAAKIVCRHVK 546

Query: 499  DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
            +GDV+L+NRQPTLH+PSI AH  R+L GEK LR+HYANC  YNADFDGDEMN HFPQ E+
Sbjct: 547  NGDVLLLNRQPTLHRPSIQAHKARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSEL 606

Query: 559  SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
             RAEAY++   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y     
Sbjct: 607  GRAEAYSLACTDEQYLVPKDGTPLAGLIQDHMVSGANMTIRGCFFTREQYMELVY----- 661

Query: 619  SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVV 678
                        Q +   R   +VLP  PAI KP PLWTGKQV++ +L ++         
Sbjct: 662  ------------QGLTDKRGRVKVLP--PAILKPYPLWTGKQVVSTLLINV--------- 698

Query: 679  ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 738
                 +P++                     L+ T K         KE     PG   ++ 
Sbjct: 699  -----IPENLI------------------PLNLTGKAKISGKAWVKEQPRPIPGFSPDS- 734

Query: 739  KNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSR 796
                    + E +++I   +L+ GV+DKA +  + +GLVH   ELYG  T+G LL+ L+R
Sbjct: 735  --------MCESQVIIRDGELLCGVLDKAHYGSSSFGLVHCCYELYGGETSGKLLTCLAR 786

Query: 797  LFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIK 855
            LFT +LQ++ GFT GV+D+L+L   + +R N +  S   G +    A  L + A  +   
Sbjct: 787  LFTAYLQLYRGFTLGVEDILVLPYADAQRLNIVQQSLHCGGKAIRAAFNLSEAASDEEAH 846

Query: 856  LKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL-LSEGLLKPTGKNWISLMTT 914
             K +     +   D  +   D+K   ++N+  +   IN++ +  GL +P  +N + LM  
Sbjct: 847  GKWQDAHLSKDQRDFNMV--DLKFKEEVNQFNNE--INKVCMPFGLHRPFPENNLQLMVQ 902

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS VN  Q                                                
Sbjct: 903  SGAKGSTVNTMQ------------------------------------------------ 914

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
               E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS++QF Y
Sbjct: 915  ---EFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVIQFLY 971

Query: 1035 GEDGVDVHQTSFI 1047
            GEDG+DV +T F+
Sbjct: 972  GEDGLDVPKTQFL 984



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/80 (67%), Positives = 67/80 (83%), Gaps = 1/80 (1%)

Query: 1126 DFLKLVKH-KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
            D LK + H K+  +L  PG+ VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+
Sbjct: 1142 DSLKTLLHLKWQRALCDPGDAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR 1201

Query: 1185 EILTIASKDIKTPVITCPLL 1204
            EIL +AS +IKTP+++ P+L
Sbjct: 1202 EILMVASANIKTPMMSVPVL 1221



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 43/76 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q    CPGH GHI+L + VYNPL F+ LY L++  CF CH     R  +   + +
Sbjct: 64  CSTCAQDFNNCPGHLGHIELPLTVYNPLFFDKLYLLVRGSCFHCHLLTCHRSVIHLLLNQ 123

Query: 61  LELIIKGDIIAAKSLD 76
           L+++ +G +     L+
Sbjct: 124 LKVLDRGAVHEVHELE 139


>gi|47156939|gb|AAT12325.1| DNA-directed RNA polymerase I largest subunit [Antonospora locustae]
          Length = 1089

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 352/963 (36%), Positives = 506/963 (52%), Gaps = 181/963 (18%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------A 324
            +FL VV V P + R  +     V E  Q + L+K+++  + +                  
Sbjct: 150  YFLRVVPVVPNRLRPINHCDGRVFEDSQNIFLTKIIKCALAVKENVAASENIDIMQEKRP 209

Query: 325  NAYVNQP----DNAKVIVARWMN-LQQSVNVLFDGKNAA-GQRDMASGICQLLEKKEGLF 378
            N    +P    + A++  ++  N L  SVN  +D  +    +    +GI QLLE+KEGLF
Sbjct: 210  NGSEREPYEGLNGAELPCSKEFNDLISSVNEYYDSSSITYAKGHTPNGIKQLLERKEGLF 269

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R+ +MGKRVNYA RSVISPDP L   EIG+P  FA +LT+PE VTP+N  +LR ++ING 
Sbjct: 270  RKYIMGKRVNYAARSVISPDPNLETREIGLPLVFAKKLTFPENVTPFNHDRLRRAVINGP 329

Query: 439  EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
            + +PGA      D ++ +   P +K R+S+  +L   R                K VYRH
Sbjct: 330  K-YPGAALLKSGDVVTNLLHVPEEK-RVSLANQLLIGR----------------KTVYRH 371

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            L   D +LVNRQPTLHKPSIMA+ VR+L+GEKTLR+HYANC+++NADFDGDEMNVH  Q 
Sbjct: 372  LNKTDFLLVNRQPTLHKPSIMAYKVRILQGEKTLRLHYANCNSHNADFDGDEMNVHAMQC 431

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLY--- 613
             +S++EA  +   +  Y   +NG+P+R L+QDHIV +A+LT KD FL   E+  +L    
Sbjct: 432  YISKSEARYLALNDYNYKVATNGNPIRGLVQDHIVMSAVLTMKDYFLRPSEYGNVLQIPL 491

Query: 614  ---------SSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITA 664
                     ++ V SSG+        +R+++ +         PAI +P  L+TGKQV+TA
Sbjct: 492  LSKEAHHEKAAPVCSSGV-------LKRIIVPK---------PAIRRPVTLYTGKQVVTA 535

Query: 665  VLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKK 724
            +L  +   R P  + R  +L                       KL               
Sbjct: 536  LLQSL---RLPISMRRTSRL-----------------------KLC-------------- 555

Query: 725  EVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELY 782
                G P E     KN                 +++ GV+DK     A+ GL+H   E++
Sbjct: 556  ----GHPEESTVVIKN----------------GEMLTGVLDKNNLGPAEKGLIHQCGEVF 595

Query: 783  GSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNH-LHGSEEIGK--RVH 839
            G N    LL+A+S++    L M G+T  ++DLL+ +  E  RK   L G   I    R +
Sbjct: 596  GDNVYNDLLTAVSQVINKLLVMDGYTLRMEDLLLSEKGEAGRKAAILEGRMHIDSAIRRY 655

Query: 840  LEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEG 899
            LE   LE GA   P  L             + VA  D  + + + +  +S V+ + + +G
Sbjct: 656  LEE-NLEHGATGRPRHLDK-----------SWVACLDSLVRNSMCE-VASEVVAKSMHKG 702

Query: 900  LLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWA 959
            +L+    N + L+  +GAKGS VN  QIS+ LGQQELEG+RVP MV G+TLP     +  
Sbjct: 703  MLRNFPYNHLILIVQTGAKGSLVNASQISAMLGQQELEGRRVPLMVDGRTLPVLS--ETT 760

Query: 960  PRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYD 1019
              +GG I +RFL G+    YYFHCMAGREGLVDTAVK +  G     + ++LE +K+ YD
Sbjct: 761  AESGGLIFERFLDGIGICAYYFHCMAGREGLVDTAVKPADQGICSD-VYQHLEGVKVEYD 819

Query: 1020 YSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGR 1079
             +VR+   +IV F YGEDG+D  +   +   + L                K ++  +  R
Sbjct: 820  GTVRNNGNAIVSFRYGEDGLDPTKVGMLKDAEFL----------------KNNYAELARR 863

Query: 1080 NQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSL 1139
            + E   +  + +L  S AY          + ++   +++   +   D   L + + VL+ 
Sbjct: 864  HAE--ERNSTVKLKGSVAY---------GHMDERHREYIG--LQHVDLETLSEWRRVLAE 910

Query: 1140 AQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVI 1199
            AQPG+PVG++A QS+GEPSTQMTLNTFH AG G  N+TLGIPRL EIL +ASK+I+TP +
Sbjct: 911  AQPGDPVGIVAGQSLGEPSTQMTLNTFHHAGVGAKNMTLGIPRLVEILMVASKNIRTPYL 970

Query: 1200 TCP 1202
            T P
Sbjct: 971  TVP 973



 Score = 48.1 bits (113), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKC 57
           C+TC    F CPGHFGHI L   + NP+ F+L++  +   C  C  F  + ++  +C
Sbjct: 56  CRTCNLGYFECPGHFGHIMLPDVMINPMHFDLIFKKVASTCERC--FSKAEKKCGRC 110


>gi|342182785|emb|CCC92265.1| putative DNA-directed rna polymerase I largest subunit [Trypanosoma
            congolense IL3000]
          Length = 1782

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 337/1000 (33%), Positives = 492/1000 (49%), Gaps = 185/1000 (18%)

Query: 279  HSIFFLGVVLVPPIKFRLPS----KGGDSVMEHPQTVLLSKVL----QANIYLANAYVNQ 330
            + +FF+  VLV P+  RL S        +++   QT LLS++L    Q   Y      N 
Sbjct: 368  YKVFFIDRVLVAPLPLRLSSGLRVTDYGTIIPDRQTRLLSEMLGFVEQIECYFT-LCANS 426

Query: 331  PDNAKVIVARWM--------NLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKL 382
                 ++             NLQQ +N  +            + I     KKEGLFR  +
Sbjct: 427  TSGCSLVTTEQTITNELNVRNLQQKINEYY------------TEILDSFAKKEGLFRMNM 474

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVT---PWNVVKLRDSIINGAE 439
            MGKRVN ACRSVISPDP +  NE+ +P   A  L+YPE+VT   P  +  LR  ++NG  
Sbjct: 475  MGKRVNQACRSVISPDPLVEPNEVVMPRPLAKALSYPEQVTYYAPARMDLLRLCVVNGPR 534

Query: 440  IHPGATHYLDKLST-------MRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKM 492
             +PGATH   + +        + LP + +      R+      A+ Q            +
Sbjct: 535  KYPGATHLEIRHANGDIRFVDLDLPEHTR------RQHAMKYFAMAQSSVT-------LI 581

Query: 493  VYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVH 552
            V+RH+ +GD V+ NRQPTLHKPS+M    +VL G KT+R HY N S++NADFDGDEMN+H
Sbjct: 582  VHRHVLNGDRVIFNRQPTLHKPSMMGFRAKVLSGHKTIRFHYVNGSSFNADFDGDEMNIH 641

Query: 553  FPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLL 612
             PQ   + AE   +++AN+ Y+ P++G P+R LIQDH+ +  LLT  D F +R  F QL+
Sbjct: 642  VPQSLEAAAEVDYLMDANSNYLVPTSGRPIRGLIQDHVAAGVLLTVPDKFFDRISFTQLV 701

Query: 613  YSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRG 672
            +      +GLG +   P    L      E++P  PAI KP PLWTGKQ+I+ ++      
Sbjct: 702  F------NGLGPYIQGPNSVGL-----SELIP-PPAILKPRPLWTGKQLISVIVQ----- 744

Query: 673  RPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPG 732
                           F    ++ D QSD  K+D G            S K   +++    
Sbjct: 745  ---------------FVSGLYDGD-QSD--KHDGG-----------VSLKGTSLIQAGAF 775

Query: 733  EEKEAEKNKS---KEKELSEEKLLIYKNDLVRGVIDKAQF-ADY-GLVHTVQELYGSNTA 787
               + E  K     +K L +  +    ++L+ G++ K Q  A Y  + H V ELYG +  
Sbjct: 776  SYPDLETEKVITFSDKALPDCSVHFKNSELLVGLLCKKQLGASYMSISHLVHELYGPHKV 835

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED 847
            G L  AL R+  + L+  G + G+DD+ +  +  R R         + + +    L LED
Sbjct: 836  GQLFGALGRVLLLTLRKEGLSLGMDDMCVAHEDLRCR---------MLRELDRSVLNLED 886

Query: 848  GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKN 907
                                 D AVA        ++ +H ++ +  E +   +L P   N
Sbjct: 887  ---------------------DEAVA------VPKIMEH-ATRIQREFMPGRMLVPFPTN 918

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
             + LMTTSGAKGS  N  Q+S  LGQQ  +G RV RM S KTLP+F   +   R+ GF +
Sbjct: 919  HLLLMTTSGAKGSNANAVQMSLVLGQQLFDGMRVKRMNSAKTLPAFFFNEKRARSFGFAM 978

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
              F TG+RP EY  H MAGR+GL+DTAVKTSRSG+LQRCLIK LE L + +D++VRD++G
Sbjct: 979  GSFATGIRPSEYTIHSMAGRDGLIDTAVKTSRSGHLQRCLIKGLESLVVHWDHTVRDSNG 1038

Query: 1028 SIVQFCYGEDGVDVHQTSFISKFDAL--------------------AARERGRGRGRNKF 1067
            S+VQF YG DG+D  +   ++ +D L                     A  +   R +   
Sbjct: 1039 SVVQFMYGGDGLDPCKACTLTAWDMLKENVADLYKRFGQGILEAGAQATNKQTTREKRMR 1098

Query: 1068 CDKGSHTFVMGRNQEMIYKKCSGQLDA-SNAYIMELPDALKDNAE-------------KF 1113
             D+  +      N  + Y +   +++A   A+   + + L++ A+               
Sbjct: 1099 EDESENGSTQVGNAGLNYAEQQKKINALPRAHREGIQNYLRNQADFVLFNKVSQVNRWIL 1158

Query: 1114 ADKFLSNEMAKQD---------FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLN 1164
             DK  +   AK++            L  H+ + +   PGE VGLLA+Q+ GEPSTQMTLN
Sbjct: 1159 KDKLFNKLSAKREEHITCYTDALENLTAHRRMRAFCDPGESVGLLAAQAAGEPSTQMTLN 1218

Query: 1165 TFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            TFH AG    +VT GIPRL+E+L  +S  ++   +  P++
Sbjct: 1219 TFHTAGSTVTHVTEGIPRLRELLIFSS--VQKAAVIVPVV 1256


>gi|340055538|emb|CCC49857.1| putative DNA-directed rna polymerase I largest subunit [Trypanosoma
            vivax Y486]
          Length = 1801

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 360/1122 (32%), Positives = 536/1122 (47%), Gaps = 212/1122 (18%)

Query: 1    CKTCGQR------QFLCPGHFGHIDL-------------VVPVYNPLLFNLLYTLLKRIC 41
            C+TC            C GHFG+I +              + V NP +   +  LL+  C
Sbjct: 90   CQTCAGNLTGKYGNERCQGHFGYISMPRRFPGNADMSQERLVVVNPHMAEEVDHLLRAKC 149

Query: 42   FFCHHFKASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPE---------DSDVS 92
            FFCH F+    +VE+  + L L+  G I  A  L LD+ S +   +         + +V 
Sbjct: 150  FFCHRFRCPCFDVERYRQALLLVDHGHIGEALHL-LDVVSTTKGYDTRHKRLYTANEEVI 208

Query: 93   NKSS------------CSMVTPRGNYDNVRNL-----KPQEWTSLQFAEAKLALLQFLKI 135
            N  S            C    P G   N  +      K +    ++   A+ AL  F + 
Sbjct: 209  NDMSMLEQHVERILKKCQGGAPSGRETNDDSSPGGAGKRKTAIDVRNTIAQQALRDFREF 268

Query: 136  ETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASS 195
                C +C+A +P+ SK        NG      + + +   N+   F    +  +   ++
Sbjct: 269  PAA-CSHCRAVSPKFSK-------RNGHIFFSFKKSALT-TNISHAFLSQAQVNEWETNN 319

Query: 196  DVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLW 255
             +     H  N T+   Q+                F+  K LF       +   ++E L+
Sbjct: 320  QL-----HRRNLTYLSCQNI---------------FEHIKCLFR------NEGTMLEMLF 353

Query: 256  ENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--KGGD--SVMEHPQTV 311
             +  E   F     ++    +  + +FF+  +LVPP+  RL S  K  D  S++    T 
Sbjct: 354  PHLGEPSVFTK--YRKPMAPEERYKVFFIERILVPPLPLRLSSGVKVNDCGSILPDEHTR 411

Query: 312  LLSKVL----QANIYLANAYVNQPDNAKV----IVARWMNL---QQSVNVLFDGKNAAGQ 360
             LS +L    Q   Y      ++P    V     VA  MNL   Q  VN  +        
Sbjct: 412  TLSDILGFVEQIECYQTLCNNSKPGRCLVNDAQRVANEMNLRNLQLKVNEYY-------- 463

Query: 361  RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE 420
                + I     KKEGLFR  +MGKRVN ACRSVISPDP +  NE+ +P  FA  L++PE
Sbjct: 464  ----TTILDSFAKKEGLFRMNMMGKRVNQACRSVISPDPLVEPNEVLLPRPFARALSFPE 519

Query: 421  RVTPWNVVK---LRDSIINGAEIHPGATHYLDKLSTMRL------PPNKKMRISIGRKLD 471
            +VT +  V+   L+  +ING   +PGATH   + S   +       P +  R    +   
Sbjct: 520  QVTCYAPVRMNLLKHCVINGPRRYPGATHIELRHSNGEIRFVDLDVPEQTRRQHAAKYFA 579

Query: 472  TSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLR 531
             ++  +              +VYRH+ +GD V+ NRQPTLHKPS+M + VRVL G KT+R
Sbjct: 580  MAQSGVTM------------IVYRHILNGDRVVFNRQPTLHKPSMMGYRVRVLSGFKTIR 627

Query: 532  MHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIV 591
             HY N S++NADFDGDEMN+H PQ   ++AE  ++++AN+ Y+ P++G P+R LIQDHIV
Sbjct: 628  FHYVNGSSFNADFDGDEMNIHVPQSLEAKAEISSLMDANSNYLVPTSGKPIRGLIQDHIV 687

Query: 592  SAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWK 651
            +  +LT +D F +R  F QL+Y       GLG++  + GQ  L      E++P +PAI  
Sbjct: 688  AGVMLTLRDKFFDRATFVQLVY------YGLGTYLQQQGQVTL-----SELIP-VPAILM 735

Query: 652  PEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSK 711
            P PLWTGKQVI+ V    TR    FV   GG+   DF       + Q++   + +G  S 
Sbjct: 736  PRPLWTGKQVISVV----TR----FVSYSGGE--GDF-------NVQNESGVSIRGT-SL 777

Query: 712  TNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF-- 769
                  D +    + V   P               + +  +L   ++L+ G++ K Q   
Sbjct: 778  IQPSAFDTTPAGSDQVRSMP------------RTAIDDNMVLFMNSELLIGLLCKKQLGA 825

Query: 770  ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLH 829
            +   + H + ELYG +  G L  AL R+  + LQ  GF+ G+DD+ ++++K R       
Sbjct: 826  SSMSIAHVIHELYGPHKVGQLFGALGRILMLSLQSEGFSFGMDDMCLVQEKRR------- 878

Query: 830  GSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSS 889
                       E L   D A   P+ L  +   AM                +++ +H S+
Sbjct: 879  ----------CELLRQLDEA---PLSLPDDEATAM----------------TKIMEH-ST 908

Query: 890  SVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKT 949
             +  E +   +  P  +N + +MTTSGAKGS  N  Q+S  LGQQ  +G RV RM SGKT
Sbjct: 909  KLQQEFMPGRMKIPFPRNHLLMMTTSGAKGSSANATQMSLGLGQQLFDGLRVKRMNSGKT 968

Query: 950  LPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK 1009
            LP+F   +   R+ G+ I  F +G+RP EY  H MAGR+GL+DTAVKTSRSG+LQRCLIK
Sbjct: 969  LPAFFINEKRARSFGYAIGSFASGIRPSEYVIHAMAGRDGLIDTAVKTSRSGHLQRCLIK 1028

Query: 1010 NLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFD 1051
             LE L +  D+SVRD++GS++QF YG DG+D  + S ++ ++
Sbjct: 1029 GLESLVVHMDHSVRDSNGSVIQFMYGGDGLDPCKASTLTAWE 1070



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 1130 LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTI 1189
            +   K   +  + GEPVGLLA+Q+ GEPSTQMTLNTFH AG    +VT GIPRL+E+L  
Sbjct: 1193 ITTRKRAWAFCEAGEPVGLLAAQAAGEPSTQMTLNTFHSAGSTVKHVTEGIPRLRELLIY 1252

Query: 1190 ASKDIKTPVITCPL 1203
            AS  ++   +  P+
Sbjct: 1253 AS--VRNAAVVVPV 1264


>gi|316997011|dbj|BAJ52633.1| RNA polymerase I largest subunit [Ephydatia fluviatilis]
          Length = 1194

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 242/554 (43%), Positives = 349/554 (62%), Gaps = 61/554 (11%)

Query: 500  GDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVS 559
            GD++L+NRQPTLHKPSIMAH  RVL GEKTLR+HYANC +YNADFDGDEMN HFPQ+E++
Sbjct: 2    GDILLLNRQPTLHKPSIMAHKARVLPGEKTLRLHYANCKSYNADFDGDEMNAHFPQNELA 61

Query: 560  RAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSS 619
            R+EAYNIV+ +NQY+ P +G PL  LIQDH+V+  L+T +    +R ++  L++S+  S 
Sbjct: 62   RSEAYNIVSTHNQYLVPKDGTPLSGLIQDHVVAGVLMTIRGRMFSRADYMNLVFSAIPSL 121

Query: 620  SGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVE 679
                             RS+ + LP  P I KPE LW+GKQV++ +L +IT         
Sbjct: 122  -----------------RSQYKTLP--PCILKPEKLWSGKQVVSTLLLNIT--------- 153

Query: 680  RGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEK 739
                 P D +K    +  +   K+  +G +  +                     +K+ + 
Sbjct: 154  -----PDDQYKLNLVSKTKIAPKEWSRGAVKSSASK------------------KKKKKA 190

Query: 740  NKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRL 797
             +  +  ++E +++  + +L+ GV+DK+QF  + +G VH + ELY       LLSAL RL
Sbjct: 191  VQYHDDIMTESEVIFREGELLSGVLDKSQFGASQFGFVHCIYELYNGEVCNLLLSALGRL 250

Query: 798  FTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI-KL 856
            FT FLQ+HGF+ G++D+L+  + + ERK  +  +   G     E      G   D + ++
Sbjct: 251  FTSFLQLHGFSLGLEDILVKPEADLERKKAIAEARSCGAAAAAECF----GTSPDDLAQI 306

Query: 857  KSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINEL-LSEGLLKPTGKNWISLMTTS 915
            + + E A     + A+   D  M  + +++  +++IN + + +GL KP   N + LM  S
Sbjct: 307  REKYEAAHHSRDNTALKTLDFVMKKKTDQY--NNIINGVCVPDGLYKPFPHNSLQLMVQS 364

Query: 916  GAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLR 975
            G+KGS VN  QIS+ LGQ ELEG+R P M SG+ LPSF P+D +PRAGGF+ +RFLTG+R
Sbjct: 365  GSKGSTVNCMQISALLGQMELEGQRPPLMPSGQFLPSFRPYDISPRAGGFVDERFLTGVR 424

Query: 976  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYG 1035
            PQEY+FHCMAGREGLVDTAVKTSRSGYLQRCLIK++E + ++YD +VR +DGS++QF YG
Sbjct: 425  PQEYFFHCMAGREGLVDTAVKTSRSGYLQRCLIKHMEGVIVNYDLTVRGSDGSVIQFLYG 484

Query: 1036 EDGVDVHQTSFISK 1049
            EDG+D+ +T F+S+
Sbjct: 485  EDGLDIGKTRFLSE 498



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/139 (49%), Positives = 90/139 (64%), Gaps = 14/139 (10%)

Query: 1080 NQEMIYKKCSGQLDASNAYIME------LPDALKDNAEKFADKFLSN--------EMAKQ 1125
            ++E + KKC  + D  NA + +       P+AL +  + F +K  S         +++  
Sbjct: 601  SKESLRKKCLTRPDPVNASLRQDRFFGSAPEALMEKLKSFIEKNPSKLHNIEGDCKVSGD 660

Query: 1126 DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1185
             F  LV+ K + +LA PGE VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+E
Sbjct: 661  KFTSLVQLKCLRALADPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLRE 720

Query: 1186 ILTIASKDIKTPVITCPLL 1204
            IL  AS +IKTP +  PLL
Sbjct: 721  ILMTASANIKTPAMDVPLL 739


>gi|330038842|ref|XP_003239717.1| DNA-directed RNA polymerase I chain-like protein [Cryptomonas
            paramecium]
 gi|327206641|gb|AEA38819.1| DNA-directed RNA polymerase I chain-like protein [Cryptomonas
            paramecium]
          Length = 1458

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 355/1232 (28%), Positives = 562/1232 (45%), Gaps = 176/1232 (14%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C +CG     CPGHFG+IDL +P+ +PL+ NL  +LL+  CF+C+ FK S  +++    K
Sbjct: 68   CISCGANYSACPGHFGYIDLAIPISSPLVKNLFASLLESCCFYCNFFKISSWKIKLSYIK 127

Query: 61   LELIIKGDI-IAAKSLDLDLPS-----------ESSNPEDSDVSNKSSCSMVTPRGNYDN 108
            L L    D+ +  K +DL L              S N +  ++ N+     +  +  +D 
Sbjct: 128  LLLF---DLNLNIKKIDLRLNRISFSKSNRSFFFSYNIKIVNLINQKIEKTIYSKFFFDK 184

Query: 109  VRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADI 168
            ++ ++  +   + F   KL+         T C  CK                        
Sbjct: 185  IKKIQKNQSNFVNFFLKKLS-------SVTCCQKCKK----------------------- 214

Query: 169  RANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVP 228
              N I G      +    +      +  +     + FN     T+       QK     P
Sbjct: 215  --NKIYG------YQKKSKALFKKKNHYLSFYVKNIFNFV---TKKNILLCSQKYIKFFP 263

Query: 229  SGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI--SDMQQQGFGKKAGHSIFFLGV 286
              F+K+   FS        K  +  LW+ E + C  I  S ++   F K+     FFL  
Sbjct: 264  FSFEKKNCFFSF-----QEKKYLCDLWKYENDFCELIWGSIVKSYKFKKQKKFENFFLNK 318

Query: 287  VLVPPIKFR-----LPSKGGDSVMEHPQTVLLSKVLQAN--IYLANAYVNQPDNAKVIVA 339
            ++VPP +FR        K    ++ + Q     K+++ N  + LA    +      +I  
Sbjct: 319  LMVPPTRFRPIYFNSIFKNKMQILSNSQNFYFLKIVKLNQQLLLAIGASSLTSRQSMIRK 378

Query: 340  RWMNLQQSVNVLFDGKNAAGQRDMAS---GICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
               +L+ +++ LFD   +      +    GI Q LEKK GLFR  LMGKRVN++ RSVI+
Sbjct: 379  FLSDLESTISCLFDSNCSPSSMFSSKSPIGIKQQLEKKMGLFRMYLMGKRVNFSARSVIT 438

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
             DPYL  NEIG+P     ++     +  +N+      ++   + +      ++ +   R+
Sbjct: 439  SDPYLKTNEIGLPYICKEKIGSFRILNKFNLSSFLKVLLYKKDRNKFHFKMIETIFGKRI 498

Query: 457  ---PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHK 513
                  +K++I +G      R       K  +N F    V++ +   D+VLVNRQP+LHK
Sbjct: 499  NIFEEERKLKI-LGLVQIFKRYFDYYIYKRLEN-FGFMKVFKMICSQDLVLVNRQPSLHK 556

Query: 514  PSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQY 573
             SIMAH V + K  K L ++YANC+ YNADFDGDEMN+H   + + +AEA+ +   +N  
Sbjct: 557  ASIMAHRVVIRKRTKCLSLNYANCAPYNADFDGDEMNLHIINNVMGKAEAFVLSLTHNHS 616

Query: 574  VRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRV 633
              P+N  P+R LIQD+IVS+ LLTKKD FL  + F  LL    +  S    F        
Sbjct: 617  RIPTNSIPIRCLIQDYIVSSVLLTKKDNFLREEIFFYLLNCLFIEKSLFCKFC------- 669

Query: 634  LISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRF 693
                         P I KP  LWTGKQ+ + V+ +                   FF++R 
Sbjct: 670  ------------FPIILKPRVLWTGKQLFSMVMKNSIASNSAL-----------FFESR- 705

Query: 694  NADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLL 753
                               NKM+K   G+ + +V  + GE                    
Sbjct: 706  -------------------NKMNKIGYGEDETLVLIRNGE-------------------- 726

Query: 754  IYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
                 L++GVID +Q     +G++H + E Y S T   +L+ LS L   F + +G T G+
Sbjct: 727  -----LLKGVIDASQLGKKKHGILHALHEKYDSTTVDDVLTNLSFLLMFFQRSYGHTTGL 781

Query: 812  DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGG--- 868
            +DL+I    ++ R        ++ K +  + L  + G  ++ +    +I   +   G   
Sbjct: 782  NDLIISSKMDKFRTKGFSRERKLKKLIIRKILS-KKGFFLEKLSKTKKIYSFLNIAGLFF 840

Query: 869  --DAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQ 926
              + ++  F   + S L K  ++++ N    E +     KN    +  SG+KGS VNF Q
Sbjct: 841  IQENSLRQFIFYVKSILTKICTNTIENNF-PENIETNLDKNGFLAIILSGSKGSFVNFFQ 899

Query: 927  ISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAG 986
            I ++LGQ ELEG  + R    K LP F P++ +  + GFI+ RFLTG+ P  Y+FH MAG
Sbjct: 900  ICTNLGQMELEGNCISRDYEFKVLPFFFPFEISCESNGFIVQRFLTGIDPPGYFFHSMAG 959

Query: 987  REGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            RE L+DT +KT++SGY+QR LIK+ E + ++YD +VR     I+Q  Y ++G+    + F
Sbjct: 960  RESLLDTTIKTAQSGYIQRSLIKHFEDVNLNYDLTVRSMSNDIIQIIYFQNGLSSLNSDF 1019

Query: 1047 ISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ-EMIYKKCSGQLDASNAYIMELPDA 1105
               F              +      ++  V+ +N   +++KK     +  + +       
Sbjct: 1020 NQIFIWYLQNLSAYFISSSYVSTIKANKNVINKNTLYILFKKLKNMYNPVDVFYRFKQLI 1079

Query: 1106 LKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNT 1165
             + +   + DK +S+   K             SL +PGEPVG++  QS+GEP TQMTLN+
Sbjct: 1080 YEKSKSFYLDKCISDVYQK-------------SLYEPGEPVGIVTGQSIGEPCTQMTLNS 1126

Query: 1166 FHLAGRGEMNVTLGIPRLQEILTIASKDIKTP 1197
            FH AG+  ++   GIPR++EIL  AS  +K P
Sbjct: 1127 FHFAGKIALSYATGIPRIKEILMTASNHVKNP 1158


>gi|221040014|dbj|BAH11770.1| unnamed protein product [Homo sapiens]
          Length = 1207

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/570 (43%), Positives = 341/570 (59%), Gaps = 68/570 (11%)

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
            K+V RH+++GD++L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN
Sbjct: 41   KIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMN 100

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
             HFPQ E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+ + +
Sbjct: 101  AHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYME 160

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            L+Y            T K G+  L+S          P+I KP PLWTGKQV++ +L +I 
Sbjct: 161  LVYRG---------LTDKVGRVKLLS----------PSILKPFPLWTGKQVVSTLLINI- 200

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                         +P+D                N  GK   T K         KE     
Sbjct: 201  -------------IPEDHIPL------------NLSGKAKITGK------AWVKETPRSV 229

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAG 788
            PG   ++         + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G
Sbjct: 230  PGFNPDS---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSG 280

Query: 789  TLLSALSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED 847
             +L+ L+RLFT +LQ++ GFT GV+D+L+    + +R+  +  S   G +    AL L +
Sbjct: 281  KVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPE 340

Query: 848  GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKN 907
             A  D ++ K   + A  G         D+K   ++N H S+ +    +  GL +   +N
Sbjct: 341  AASYDEVRGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPEN 397

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
             + +M  SGAKGS VN  QIS  LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+ 
Sbjct: 398  SLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVT 457

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
             RFLTG++P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DG
Sbjct: 458  GRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDG 517

Query: 1028 SIVQFCYGEDGVDVHQTSFIS--KFDALAA 1055
            S+VQF YGEDG+D+ +T F+   +F  LA+
Sbjct: 518  SVVQFLYGEDGLDIPKTQFLQAKQFPFLAS 547



 Score =  117 bits (292), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 81/114 (71%)

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
             S  +  ++ D  ++ A +    +  +E++      L++ K+  SL +PGE VGLLA+QS
Sbjct: 664  VSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 723

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L  K
Sbjct: 724  IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTK 777


>gi|412985554|emb|CCO19000.1| predicted protein [Bathycoccus prasinos]
          Length = 1879

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 281/791 (35%), Positives = 400/791 (50%), Gaps = 129/791 (16%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG  Q  CPGHFGHIDLVVPVY+PLLF  +  +L+  C  CH FK     V     +
Sbjct: 94  CSTCGLSQHHCPGHFGHIDLVVPVYHPLLFPTVTKVLRCACLNCHKFKMHTERVNMFRER 153

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVR---------- 110
           L+LI +G++ +A  +     S+S+  E S++  ++       R + +N R          
Sbjct: 154 LDLIDRGELESAADVSQWKLSKSTMRELSEIEEEN-------RKDRENTRKEEGGEAPEM 206

Query: 111 -----NLKPQ------------------EWTSLQFAEAKLALLQFLK-IETTKCGNCKAK 146
                NL P+                  EWT+      +  +  F K +   +C NC+A 
Sbjct: 207 MDLDANLMPKLDSLTRKKTKRGNQYVPLEWTTSALTAKRELIDSFFKSVPKARCENCRAF 266

Query: 147 NPRISKPTFGWIHMNGMPHADIRANLIRGCNL---------GETFSGGEEEKDLGASSD- 196
            P +S      I+   +P   +  NL  G ++           +  G +E+ D G  ++ 
Sbjct: 267 GPGLSTEGSTKIYRKPLPKKQLVTNLANGIDVDFSMKQLAKAASAEGADEQVDSGTVAEM 326

Query: 197 -----VDAPETHSFNGTFPGTQD-----------------------TAARRHQKGSGAVP 228
                V+         T   ++D                        ++    +      
Sbjct: 327 TGGTVVEGKSKKIIQKTKKNSRDRNSDGSSSSSSSSEDDDDDDSSSLSSSTDSEEDNYDE 386

Query: 229 SGFKKQ--KDLFSGPLLPSDVKDIIEKLWENEFELCSFI---------SDMQQQGFGKKA 277
            GFK++  K ++  P+   + ++I+ +LW NEFE C+ +         SD+  +   + +
Sbjct: 387 GGFKERSTKPMYVTPI---EAREILRRLWGNEFEWCARVWCANGRDQSSDLTTKR--QAS 441

Query: 278 GHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY-------VNQ 330
             + FF   +LVPP K R PSK GD V EHPQ   L  ++QAN+ L   +          
Sbjct: 442 NPNRFFCQTILVPPPKLRPPSKMGDMVFEHPQNTHLCAIIQANLSLTELFRTPPTVPEPP 501

Query: 331 PDNAKVIVARWMNLQQSVNVLFDGKNAAGQRD-MASGICQLLEKKEGLFRQKLMGKRVNY 389
              A   V  W+ +Q  VN L D   A   +D +  GI Q LEKK+GLFR  +MGKRVNY
Sbjct: 502 EVRASRAVRAWLVIQGGVNRLMDATKADRIQDRVGIGIRQQLEKKQGLFRMNMMGKRVNY 561

Query: 390 ACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLD 449
           A RSVISPDPYL   EIG+PP FA  LT+PE VTP NV  +R+ +  GA+ HPGA    D
Sbjct: 562 AARSVISPDPYLGTGEIGVPPVFAKTLTFPELVTPHNVELMRELVERGADEHPGANAVED 621

Query: 450 K----LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLV 505
           +    ++  R   +K+ R +I + L +     V   KD+D     + VYRHL++GD++L 
Sbjct: 622 ERGRIINLARF--SKEKRRAIAKTLLS-----VSAAKDADGRPLARKVYRHLRNGDIMLT 674

Query: 506 NRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYN 565
           NRQPTLHKP I+AH  RVL G++T+RMHYANCST+NADFDGDE+N+HFPQD  +RAEAY 
Sbjct: 675 NRQPTLHKPGILAHCARVLPGQRTIRMHYANCSTFNADFDGDEINLHFPQDHQARAEAYE 734

Query: 566 IVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSF 625
           IV A  Q+  P++G PLR LIQDHI SA LLT KD F N++ F Q+++++ V      + 
Sbjct: 735 IVKAEEQFYAPTDGKPLRGLIQDHICSAVLLTCKDRFYNKEGFSQIVFAALVDLCDRENL 794

Query: 626 TGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLP 685
           T K              LP  P I KP  LWTGK V+  +L+H+   RP   ++   K P
Sbjct: 795 TIK--------------LP-PPTILKPRRLWTGKDVMRTILDHVAYQRPGVTLKHSCKTP 839

Query: 686 QDFFKTRFNAD 696
             F+ ++   D
Sbjct: 840 HTFWGSKEEGD 850



 Score =  411 bits (1056), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 232/496 (46%), Positives = 310/496 (62%), Gaps = 58/496 (11%)

Query: 749  EEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFT 808
            E  L++ +N +  GV+DK  F  +GL+H V EL+G   AG LLS LSRL T+FLQ HGFT
Sbjct: 848  EGDLIVRQNYICTGVVDKNAFGKFGLIHAVAELHGKQIAGKLLSVLSRLLTLFLQQHGFT 907

Query: 809  CGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGG 868
            CG+DDL+++ + E  R   L  +    K      ++++D  E+    L+S +   +    
Sbjct: 908  CGMDDLVLVAESEELRVKELAKAGAAAKSAAEAFVQVKDVPEM---ALRSAVSARVTERP 964

Query: 869  DAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQIS 928
            D+  A  D + +  LN+ TS++V    L  G  KP  +N +SLMT SGAKGS VNF QI+
Sbjct: 965  DSEAA-LDARSSGALNQVTSATV-KVCLPSGTKKPFHRNCLSLMTMSGAKGSMVNFSQIA 1022

Query: 929  SHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGRE 988
            + LGQQELEG+RVPRM SGKTLP F P+D  PRAGG+I DRF +GLRPQEYYFHCMAGRE
Sbjct: 1023 AALGQQELEGRRVPRMASGKTLPCFAPFDCDPRAGGYISDRFYSGLRPQEYYFHCMAGRE 1082

Query: 989  GLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV------- 1041
            GLVDTAVKTSRSGYLQRCL+KNLE LK+ YD++VRD DG+IVQF YG+DG++V       
Sbjct: 1083 GLVDTAVKTSRSGYLQRCLVKNLEGLKVHYDHTVRDVDGTIVQFLYGDDGIEVSKGVYAK 1142

Query: 1042 --------------HQTSFISKFDALAARERGRGRGRNKFCDKGSHTFV-MGRNQEMI-- 1084
                             S +S+FD  ++++       + F DK +  F  + RN   +  
Sbjct: 1143 EFAFALENIESLKLQNKSALSEFDDSSSKKEN-SNPEDAFMDKKTRAFPDVPRNASSVVE 1201

Query: 1085 YKKCSGQLDASNAYIMELPDALKDNAEKFA---DKFL--------------SNEMAKQDF 1127
            ++K   Q  +    +  LP       EKFA   D FL              ++++ +++F
Sbjct: 1202 HEKRYSQFTS----LGILP-------EKFAKDLDDFLHVTHGIPSDEEFEQAHKVTRKEF 1250

Query: 1128 LKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 1187
             K++  KF+ S+A PGE VG++A+QSVGEPSTQMTLNTFH AGRGE NVT+GIPRL+E+L
Sbjct: 1251 AKIMNLKFIASMASPGEAVGVVAAQSVGEPSTQMTLNTFHFAGRGEANVTMGIPRLRELL 1310

Query: 1188 TIASKDIKTPVITCPL 1203
              AS+    PV+T PL
Sbjct: 1311 MAASRKPTLPVMTMPL 1326


>gi|399949602|gb|AFP65260.1| DNA-directed RNA polymerase I chain-like protein [Chroomonas
            mesostigmatica CCMP1168]
          Length = 1512

 Score =  444 bits (1142), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 381/1293 (29%), Positives = 565/1293 (43%), Gaps = 261/1293 (20%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C +C      CPGHFGHI+ ++PV NP L N+   +LK  C++C+ FK S  E       
Sbjct: 69   CFSCKGNYVSCPGHFGHINFILPVQNPYLKNIFSKVLKTKCWYCNFFKISNWETR----- 123

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSD------------VSNKSSCSM--------- 99
                    I   K L LD  +  + PE S             + NK    +         
Sbjct: 124  --------IAYFKFLSLDSKNGYNIPEKSKIQFKKKKLQTHIIRNKKKIFLYFKFIKTLT 175

Query: 100  ----------VTPRGNYDNVRNLKPQEWTSLQFAEAKLALLQFLKIETTK--CGNCKAKN 147
                        PR ++   +N + + W S         LL FLK+  TK  C  CK K 
Sbjct: 176  IKIKKSWDIEYFPRISFIE-KNKRGKFWCS--------CLLFFLKLCATKEFCQKCKKKK 226

Query: 148  PRISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNG 207
             RI      +   N  P       LI            E+E D       D      F+ 
Sbjct: 227  VRILSILGEYYLTNKKPF------LI------------EKELDFYLKQTGDQ---QIFSF 265

Query: 208  TFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELC----- 262
            +F           +K   +     KKQ D                 LW  E E C     
Sbjct: 266  SFENFSKI-CNNVRKNCNSKAFQLKKQID----------------NLWRYEKEFCEIVWG 308

Query: 263  SFISDMQQQGFGKKAGHSIFFLGVVLVP-----PIKFRLPSKGGDSVMEHPQTVLLSKVL 317
            SF +  Q   F K+    IFFL  +LV      PI F    +  + +  +PQ    +K L
Sbjct: 309  SFGASFQ---FEKRYNSEIFFLSCILVSPNRYRPIYFSKIKEKNNEIETNPQNYYFTKAL 365

Query: 318  QAN--IYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKN--AAGQRDMASGICQLLEK 373
              N    LA +  +   +  +    +  L++ ++ LFD        ++    GI Q LEK
Sbjct: 366  LLNQQFLLAMSTFSSDLDINLSFHSFGELEKLISNLFDNYTDIPENKKKKPLGIKQRLEK 425

Query: 374  KEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDS 433
            K GLFR  +MGKRV ++ RS+I PDP+L   E GIP  FA +L+ P  +  ++  ++   
Sbjct: 426  KFGLFRMYMMGKRVFHSARSIIIPDPFLESFEAGIPSTFAQKLSSPIMINSFSYFRMTKP 485

Query: 434  IINGAEIHP-GATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGK- 491
            +     I P    +Y + +  +     KK    I  K       I    K   N  E K 
Sbjct: 486  M---ERIFPRNKINYEENM--VETSFGKKSLFGIKNKKSFLIQFIAICNKYKKNFLEEKN 540

Query: 492  ------MVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
                     + L + D+VL+NRQP+LH+ S+M+H V++    K +R+HY+NC++YNADFD
Sbjct: 541  KNYGINRWKKSLLENDLVLLNRQPSLHQASLMSHSVKITIQTKCIRIHYSNCNSYNADFD 600

Query: 546  GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
            GDEMNVHFPQ+ ++ AE+  +  A N    P++   +R LIQD+I+++  LT+KDTFL+ 
Sbjct: 601  GDEMNVHFPQNILANAESLMLSIAFNHAKIPTHNTLMRGLIQDNIITSVNLTQKDTFLSE 660

Query: 606  DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
                 L+ S+                   I   E       PAI KP+ LWTGKQ  + V
Sbjct: 661  TILFHLVGSA-------------------IKDKENSKFSFCPAIIKPKILWTGKQAFSIV 701

Query: 666  LNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKE 725
            L    + +    +E   K+ + FF                               GK + 
Sbjct: 702  LKLFLKKKWLLNLESRTKITKIFF-------------------------------GKDET 730

Query: 726  VVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFA--DYGLVHTVQELYG 783
             +  + GE                         L+RGVID +Q     +GL H   E+YG
Sbjct: 731  KILIRKGE-------------------------LLRGVIDASQIGRNRHGLFHAFDEIYG 765

Query: 784  SNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL 843
            +     LLS L R    F ++ GF+ G++DL++ K  ++ R       ++I        L
Sbjct: 766  NFVTDKLLSVLCRSLVFFQRIQGFSSGLEDLILRKKIDKNRIKIFRKEKKISH------L 819

Query: 844  ELEDGAEIDPIKLKSEIEKAMRGGGDAAVA-----------YFDMKMTSQLNKHTSSSVI 892
             L+     + I  K  IEK         +            +F +K  +  NK +S+++ 
Sbjct: 820  ILKKTLSNNGICYKKFIEKNFFDQNYLKIISFLFTYRKLFEFFIIKSKNIFNKISSNTIE 879

Query: 893  NELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPS 952
            + +L  G+ K    N    MT +GAKGS +N  QI S+LGQ ELE + +P    GKTLP 
Sbjct: 880  STVLG-GMEKKFFVNGFLQMTITGAKGSILNVFQICSNLGQTELEEQFIPLGYGGKTLPV 938

Query: 953  FHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 1012
            F P+D++  A  ++  RF TG+   E++FHC+AGREGL+DT++KTS+SGY+QR LIK+LE
Sbjct: 939  FPPFDFSYLANAYVFRRFSTGIGQSEFFFHCIAGREGLLDTSIKTSQSGYVQRSLIKHLE 998

Query: 1013 CLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGS 1072
             LK++ D SVR  DGS+ QF Y  +G+      F           +   R +N      +
Sbjct: 999  SLKLNQDLSVRFGDGSVAQFHYFHNGLSSCAFDFDCFLPWFFQNFKRINRKKN--ITNLN 1056

Query: 1073 HTFVMGR------------------NQEMIY-------KKCSGQLDASNAYIMELPDALK 1107
              F +                    ++ M++       KK    ++ SN         L+
Sbjct: 1057 SVFQLDSINKLKKKKTKKNSIKNFFSKNMVFSLGDKNLKKIISTINKSN--------LLR 1108

Query: 1108 DNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFH 1167
             N     + F      +++F+KL +     +LAQPGEP+G++ S S+GEP TQMTLNTFH
Sbjct: 1109 KNRYSIWNFFFQ----EKNFIKLYRK----NLAQPGEPLGIITSHSLGEPCTQMTLNTFH 1160

Query: 1168 LAGRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
             AG+       GIPRL+EI+ IAS+    P ++
Sbjct: 1161 FAGKLVSKNNSGIPRLKEIVLIASQQPSYPTMS 1193


>gi|160331315|ref|XP_001712365.1| rpa1 [Hemiselmis andersenii]
 gi|159765813|gb|ABW98040.1| rpa1 [Hemiselmis andersenii]
          Length = 1496

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 322/984 (32%), Positives = 486/984 (49%), Gaps = 126/984 (12%)

Query: 247  VKDIIEKLWENEFELCSFI--SDMQQQGFGKKAGHSIFFLGVVLVPPIKFR--LPSKGGD 302
            +K  I+ LW  E + C  I  S    + F K+    IFF+  +LVPP +FR    SK G 
Sbjct: 290  IKKNIDDLWRYEKDFCELIWGSLGNSKRFQKENNSEIFFISTLLVPPTRFRPVYISKMGK 349

Query: 303  SVME---HPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
               +   +PQ     K+L+ N  L      +    +     +   ++++  +FD      
Sbjct: 350  KKTQTKTNPQNFYFLKILKINQQLLMTIGFKKKKKEEWSKIFFQYEKTIISMFDNSIYPS 409

Query: 360  QRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLT 417
            ++   + SGI Q LEKK G+FR  +MGKRV ++ R++I+PDP+L   E+GIP  FA +LT
Sbjct: 410  EKQSILPSGIKQQLEKKFGIFRMYIMGKRVCHSARTIITPDPFLLSFEVGIPKNFAFKLT 469

Query: 418  YPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAI 477
                V  +N  K +  +            +L K S     PN      I +K        
Sbjct: 470  SFPPVNFFNFPKKKQKLDKRWIESLFGKKFLIKPSEKF--PNFFKLFKICQKYQECFFQ- 526

Query: 478  VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 537
              P K   +  E       + + D VL+NRQP+LH+ S+M+H ++++   K +++HY+NC
Sbjct: 527  KNPKKYGISRSET-----MISEKDFVLLNRQPSLHRASLMSHSIKIIPRNKCIKIHYSNC 581

Query: 538  STYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
            ++YNADFDGDEMN+HF Q++++R+E+  + +A +    P+    +RSLIQD I+++  LT
Sbjct: 582  NSYNADFDGDEMNMHFSQNDLARSESLVLSSAFHHSKIPTQKTIMRSLIQDSIIASVFLT 641

Query: 598  KKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWT 657
            KKDTF +++   Q+L            F  KP       +S + +    P+I KP+ LWT
Sbjct: 642  KKDTFFSQNNLFQIL-----------GFLEKP------KKSFENLF--FPSILKPKILWT 682

Query: 658  GKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHK 717
            GKQ+I                     L   FFK            KN    L   +K+ K
Sbjct: 683  GKQLIFI-------------------LSTLFFK------------KNWLISLESRSKLTK 711

Query: 718  DKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLV 775
               G                         L E K+LI K +L+RG++D +Q     +GL+
Sbjct: 712  LFYG-------------------------LDETKILIRKGELLRGILDASQIGKNKHGLL 746

Query: 776  HTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIG 835
            H   E+YG+  +   LS   ++   F + HGF+ G+++L ILK K    +      E++ 
Sbjct: 747  HAFNEIYGNYVSDLFLSCFGKISIFFQRYHGFSVGIEEL-ILKKKIDYNRLKTFRKEKLL 805

Query: 836  KRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHT-------- 887
             +++L+    ++G  ++        +K  R      +  F   +                
Sbjct: 806  FKIYLKKTLSKNGLFLNLYD-----QKKNRLNLQFKILAFFCTLNPLFESFIRSLRIILG 860

Query: 888  --SSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMV 945
              SS+++  L+  GL K    N  S MT SGAKG+ +N  QI S LGQ ELEG+      
Sbjct: 861  VISSNILENLIIGGLQKAPQINGFSKMTNSGAKGTSLNIFQICSSLGQTELEGEFFHFGP 920

Query: 946  SGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQR 1005
             GK LP+F P+D + RA GFI  RFLTG+   EY+FHCMAGREGL+DT++KTS+SGY+QR
Sbjct: 921  GGKNLPTFPPFDLSARANGFIFQRFLTGIPQPEYFFHCMAGREGLLDTSIKTSQSGYVQR 980

Query: 1006 CLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV---DVHQTSFISKFDALAARERGRGR 1062
             L+K+LE LK+SYD +VR ++GSI Q  Y ++G          F+  F     ++R    
Sbjct: 981  SLVKHLESLKVSYDKTVRFSNGSISQLIYSKNGTYSCGFDFEYFLPWFFQNFQKKRDFNP 1040

Query: 1063 GRNKFCDKGSHTFVMGRN---QEMIYKKCSGQLDASNAY-IMELPD--ALKDNAEKFADK 1116
               +FC       +  R     +  +   +  L+  N +   ++ D   L      F   
Sbjct: 1041 KNFQFCISSKSKKIKRRKKSPTKKFFTINNRFLNLKNLFEFRKIVDRFVLSKRVSFFDKM 1100

Query: 1117 FLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNV 1176
            F S E   + FLKL    F  +L +PG+PVG++ASQS+GEP TQMTLNTFH AG+     
Sbjct: 1101 FFSEE---KKFLKL----FFSNLVEPGDPVGIIASQSIGEPCTQMTLNTFHFAGKLVSKN 1153

Query: 1177 TLGIPRLQEILTIASKDIKTPVIT 1200
             LGIPRL+EIL  AS+  K P ++
Sbjct: 1154 NLGIPRLREILLTASQFPKNPTMS 1177



 Score = 60.1 bits (144), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 33/50 (66%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
           C +C      CPGHFGH+DL++P+ NP+L NL   +LK  C +C+ F+ S
Sbjct: 69  CVSCRGNYLTCPGHFGHVDLIIPIKNPMLKNLFVNILKAKCNYCNLFRIS 118


>gi|449665133|ref|XP_002164942.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Hydra
           magnipapillata]
          Length = 1698

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 299/943 (31%), Positives = 467/943 (49%), Gaps = 123/943 (13%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC      CPGHFG+I+L +PVY+P+ F L+ ++L+  CF CH       +++  +R+
Sbjct: 58  CDTCSLGHIKCPGHFGYIELPLPVYHPMFFKLMISILRGSCFNCHRLVQKSCQLKLFIRQ 117

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTP---RGNYDNVRNLKPQEW 117
             L+ KG +  A +L+ +L    +    +++S+ S+  M+        Y++V N  P E 
Sbjct: 118 CNLLEKGFLSEAAALN-ELYDYYTAEARANISSDSNVQMMVCSKIESYYESVVNNSPSEQ 176

Query: 118 TS-----LQFAEAKLA--LLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRA 170
            S     LQ+ +  L   +   L  +  +C +C      I       ++ +      I+ 
Sbjct: 177 RSSTKNLLQYRQDLLKKFIKSVLLKKVKECPHCTMIKRDIRSEYNIRLYFSSASQKSIQK 236

Query: 171 NLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKG-SGAVPS 229
            +    NL       + E +     D +      F+      +    ++++ G S  V  
Sbjct: 237 AIHDLKNLKPEIKPSKIEDNFPDEEDEEEQNNDDFDEDDYCPKLQNRKKNKSGNSSIVKE 296

Query: 230 GFKKQKDLFSGP--------LLPSDVKDIIEKLWENEFELCS--FISDMQQQGFGKKAGH 279
            FK+ +D ++          + P +VK  + +LW  E+ + +  F S        ++   
Sbjct: 297 NFKENEDRYNEYKKLGLEEYITPEEVKKHLIELWNTEYSVLNALFGSFNSPSCQSRQTSP 356

Query: 280 SIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVL-----------------QANIY 322
            +FFL V+ VPP KFR  S   +   E+P+T  + K+L                     Y
Sbjct: 357 EMFFLDVIAVPPSKFRPMSYRDEKKFENPETENMCKILWNCKFIHELLNRLKLPTDDKPY 416

Query: 323 LANAYVNQP---DNAKVIVAR---------WMNLQQSVNVLFDGKNAAGQRDMASGICQL 370
           +  A+V+        KVI            W  LQ SVN L D            GI QL
Sbjct: 417 VPVAFVSTSVSQSKRKVIPGSSHKEQLQNAWEELQSSVNTLMDNTLNKLDNKNIPGIRQL 476

Query: 371 LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
           LEKKEGLFR+ +MGKRVN+ACRSVISPDP++ ++E+GIP  FA +LTY + VT WN+ KL
Sbjct: 477 LEKKEGLFRKNMMGKRVNFACRSVISPDPFINMDEVGIPLVFAKKLTYVQPVTTWNLSKL 536

Query: 431 RDSIINGAEIHPGAT--HYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEF 488
           +  +ING    PGAT   Y D   T+      + R    + L +S    ++ G+  +  +
Sbjct: 537 KQMVINGPNKWPGATMVEYEDGRKTILSDDEYERRAVAKQLLSSSHENNLKIGRTKN--Y 594

Query: 489 EGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 548
           + K VYRHL DGDV+L+NRQPTLH+PSIMAH  +VL  E+TLRMHYANC +YNADFDGDE
Sbjct: 595 QSKKVYRHLIDGDVLLLNRQPTLHRPSIMAHKAKVLTNERTLRMHYANCKSYNADFDGDE 654

Query: 549 MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
           MN HFPQ+E+ R+EAYN+V+ +  Y+ P +G PL  LIQDHIVS   +T +D F  RDE+
Sbjct: 655 MNAHFPQNELGRSEAYNLVSTHYNYLSPKDGKPLAGLIQDHIVSGVWMTSRDKFFKRDEY 714

Query: 609 CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV-LN 667
            QL++++ + S                     ++  L P I KP PLW+GKQ+ ++V LN
Sbjct: 715 QQLIFNALIDSPN-------------------KIKTLPPCIIKPVPLWSGKQIFSSVLLN 755

Query: 668 HITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVV 727
            I  G  P                                          + +G K ++ 
Sbjct: 756 IIPDGLIPL-----------------------------------------NMTGNKAKLT 774

Query: 728 EGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSN 785
           +    ++ +      K+  L+E +++I   +L+ G++DK Q+    +GLVH V ELYG  
Sbjct: 775 DSNWAKDNKVLGCSDKDPFLTEGQVIIRGGELMTGILDKTQYGSTQFGLVHCVYELYGGK 834

Query: 786 TAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALEL 845
            +G LLS L+RLFT +LQ  GF+ G++D+L+    + +RK  +   +  G    +EAL +
Sbjct: 835 ISGLLLSVLARLFTAYLQHTGFSLGIEDILVFPKSDAKRKEIIDEGKRCGDESAMEALNV 894

Query: 846 EDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTS 888
           ++  +++       ++KA        +A  D+ M ++ +K T+
Sbjct: 895 KERDQLEEC-----LQKAHFTNKGVELAQLDLSMKTRTDKITN 932



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/116 (50%), Positives = 78/116 (67%), Gaps = 6/116 (5%)

Query: 1093 DASNAYIMELPDA-LKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLAS 1151
            D  + YI   PD+ L DN E+   K     ++ + F   +  K++ S+  PGE VGLLAS
Sbjct: 1157 DELDEYIRLNPDSILSDNNEENERK-----ISPETFRPFMYAKYLRSVVHPGEAVGLLAS 1211

Query: 1152 QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            QS+GEPSTQMTLNTFH AG+ +MNVTLGIPRL+EIL  AS++I+TP +   +  GK
Sbjct: 1212 QSIGEPSTQMTLNTFHFAGQSDMNVTLGIPRLREILMTASENIQTPQMDILVCTGK 1267



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/61 (70%), Positives = 52/61 (85%)

Query: 989  GLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS 1048
            GLVDTAVKTSRSGYLQRCLIK+LE L++ YD +VRD DGS++QF YG+DG+DV Q  F+ 
Sbjct: 961  GLVDTAVKTSRSGYLQRCLIKHLEALRVEYDMTVRDGDGSVIQFLYGDDGIDVLQNQFLK 1020

Query: 1049 K 1049
            K
Sbjct: 1021 K 1021


>gi|154334991|ref|XP_001563742.1| putative DNA-directed rna polymerase I largest subunit [Leishmania
            braziliensis MHOM/BR/75/M2904]
 gi|134060764|emb|CAM37779.1| putative DNA-directed rna polymerase I largest subunit [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1814

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 281/767 (36%), Positives = 415/767 (54%), Gaps = 110/767 (14%)

Query: 303  SVMEHPQTVLLSKVLQANIYLANAYV----NQPDNAKVIVARWMNLQQSVNVLFDGKNAA 358
            S++    T  LS VLQ    +   YV    + P++  V  A+ +  + ++  L      A
Sbjct: 422  SIVPDAGTRALSDVLQFVEQIEAYYVLANNSTPEHNLVSTAQEIAQEHNLRNL-----QA 476

Query: 359  GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTY 418
               ++ + + +   KKEGLFR  +MGKRVN ACRSVISPD  L  NE+ +P  FA  LT+
Sbjct: 477  KVAEVYTNVLESFAKKEGLFRMHMMGKRVNQACRSVISPDYLLEPNEVLLPRPFARALTF 536

Query: 419  PERV---TPWNVVKLRDSIINGAEIHPGATHYLDKLST-------MRLPPNKKMRISIGR 468
            PE V   +P  ++ L+  ++NG +++PGATH    L++       + +P        I R
Sbjct: 537  PELVCSYSPARMLFLKRCVMNGPDMYPGATHLEISLTSGETRFVDLHVPE------LIRR 590

Query: 469  KLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK 528
            +      A+ Q G  +        V+RH+ DGD ++ NRQPTLHK S+MA+  +VL G K
Sbjct: 591  QHAMKYFAMAQTGSLT--------VHRHILDGDHLIFNRQPTLHKVSMMAYRAKVLSGLK 642

Query: 529  TLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQD 588
            TLR HY N S+YNADFDGDEMN+H  Q   +RAE   +++AN  Y+ P++G P+R  IQD
Sbjct: 643  TLRFHYVNGSSYNADFDGDEMNIHVVQSLEARAELECLMDANLNYLVPTSGKPIRGFIQD 702

Query: 589  HIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPA 648
            H+V+  LLT +D FL    F Q +Y      +G+  +  K G  +  + +  E++P +PA
Sbjct: 703  HVVAGVLLTLRDKFLPHHTFVQFVY------NGIAPYMQKHGNPLSPNATLTELIP-MPA 755

Query: 649  IWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
            + KP PLWTGKQ+I+A++ ++T      V  RGG                  RK N    
Sbjct: 756  VLKPHPLWTGKQLISAIVRYVT----GVVESRGGT-----------------RKSNGV-- 792

Query: 709  LSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQ 768
                  MH     +        P      E   +  K + +  +  ++++L+ G++ K Q
Sbjct: 793  -----SMHGTSLIQPNTYTTTDP---HTGELVSASRKCMEDGHVQFFESELITGILCKNQ 844

Query: 769  FADYGL--VHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKN 826
                 L  VH + E+YG +  G L  AL R+ ++ LQ  GF+ G+DD+++L++   ER+ 
Sbjct: 845  LGSCNLSVVHVIHEIYGPHMVGVLFGALGRVLSMSLQREGFSIGMDDMILLQE---ERRT 901

Query: 827  HLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKH 886
             L               EL++     P+ L  +         +A V    M M + L K 
Sbjct: 902  AL-------------LRELDNA----PLSLPDD---------EARVMPVIMGMATNLQK- 934

Query: 887  TSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVS 946
                   E +   +L+P  +N +  MT SGAKGS  N  Q+S  LGQQ  +G+RV RM S
Sbjct: 935  -------EFVPGRMLRPFPQNQLLTMTMSGAKGSNTNAIQMSLGLGQQLFDGRRVKRMNS 987

Query: 947  GKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRC 1006
            GKTLPSF   +   R+ G+ I RF +G+RP EY FH MAGR+GL+DTAVKTSRSG+LQRC
Sbjct: 988  GKTLPSFFVAEKRARSLGYAIGRFTSGIRPAEYTFHAMAGRDGLIDTAVKTSRSGHLQRC 1047

Query: 1007 LIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDAL 1053
            L+K LE L + +D+SVRDA+GS++QF YG DG+D  +TS +  ++ +
Sbjct: 1048 LVKGLESLVVQWDHSVRDANGSVIQFLYGGDGLDPMRTSSLQAWEVV 1094



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1129 KLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILT 1188
            +L   + V +    GEPVGLLA+Q+ GEPSTQMTLNTFH AG    +VT GIPRL+E+L 
Sbjct: 1215 ELTTRRRVRAYCDAGEPVGLLAAQAAGEPSTQMTLNTFHSAGSTVTHVTEGIPRLRELLI 1274

Query: 1189 IASKDIKTPVITCPL 1203
             AS  ++   I  P+
Sbjct: 1275 YAS--VQKVAIVVPV 1287


>gi|71411691|ref|XP_808084.1| DNA-directed RNA polymerase I largest subunit [Trypanosoma cruzi
            strain CL Brener]
 gi|70872214|gb|EAN86233.1| DNA-directed RNA polymerase I largest subunit, putative [Trypanosoma
            cruzi]
          Length = 1802

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 287/797 (36%), Positives = 419/797 (52%), Gaps = 131/797 (16%)

Query: 282  FFLGVVLVPPIKFRLPS----KGGDSVMEHPQTVLLSKVL----QANIYLANAYVNQPDN 333
            FF+  +LVPP+  R+ S    + G ++   PQT  LS VL    Q   Y      + PD 
Sbjct: 374  FFIDRILVPPLPLRISSGVQVQDGGAISPDPQTRALSSVLGFVEQIECYQVLQNNSTPDR 433

Query: 334  AKVIVARWM-------NLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKR 386
              +  A+ +       NLQ  VN ++              I     KKEGLFR  +MGKR
Sbjct: 434  NLLSTAQEIANEINLRNLQVKVNEVYQE------------IMGTFAKKEGLFRMNMMGKR 481

Query: 387  VNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVK---LRDSIINGAEIHPG 443
            VN ACRSVISPD  +  NE+ +P  FA  L++PE+VT +   +   L+  +ING   +PG
Sbjct: 482  VNQACRSVISPDLMVEPNEVLLPRPFARNLSFPEQVTFYASARMNLLKRCVINGPRRYPG 541

Query: 444  ATHYLDKLSTMRLP------PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
            ATH   + +   +       P +  R    R    ++  +              +VYRH+
Sbjct: 542  ATHLEIRQTNGEIRFIELDVPEQTRRQHAARYFAMAQSGVTL------------IVYRHI 589

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
             DGD V+ NRQPTLHKPS+M + V+VL G KTLR HY N +++NADFDGDEMN+H PQ  
Sbjct: 590  LDGDRVVFNRQPTLHKPSMMGYQVKVLSGHKTLRFHYVNGNSFNADFDGDEMNIHVPQSL 649

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
             ++ E   +++AN  Y+ P++G P+R LIQDHI +  LLT +D FL    F QL Y    
Sbjct: 650  EAKVELDVLMDANLNYLVPTSGKPIRGLIQDHIAAGVLLTLRDKFLEHATFVQLAY---- 705

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT-RGRPPF 676
               GL  +  +  +  L      E++P LPAI  P PLWTGKQ+I+ V+ +++  GR P 
Sbjct: 706  --YGLAPYLRQQHEITL-----SELIP-LPAILWPRPLWTGKQLISVVIRYVSGVGRRP- 756

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                      D+   R N+   S         L   + +H    G     +   PG +  
Sbjct: 757  ----------DWM--RINSGGAS---------LRGVSLIH---PGVYNHTI---PGSDVV 789

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSAL 794
                +   + + ++ L+   ++L+ G++ K Q   +   + H V ELYG +  G L  AL
Sbjct: 790  QTVTR---QTMDDDALMFMNSELLMGLMCKNQLGASSMSIAHIVHELYGPHKVGQLFGAL 846

Query: 795  SRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
             R+ +  LQ  GF+ G+DD+ +++++ R R+                 L   D A   P+
Sbjct: 847  GRILSQSLQREGFSIGMDDMCLVQEERRYRQ-----------------LRQLDEA---PL 886

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
             L  +         +AAV    M+  ++L +        E +   ++ P  +N + +MT 
Sbjct: 887  YLPDD---------EAAVMTKIMEYATKLQQ--------EFIPGRMMVPFPRNHLLMMTA 929

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS  N  Q++  LGQQ  +G+RV RM SGKTLP+F   +   R+ G+ I RF +G+
Sbjct: 930  SGAKGSNANATQMALGLGQQLFDGRRVKRMNSGKTLPAFFAHERRARSFGYAIGRFTSGI 989

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
            RP EY  H MAGR+GL+DTAVKTSRSG+LQRCLIK LE L + +D+SVRD++GSIVQF Y
Sbjct: 990  RPPEYTIHAMAGRDGLIDTAVKTSRSGHLQRCLIKGLESLVVHWDHSVRDSNGSIVQFTY 1049

Query: 1035 GEDGVDVHQTSFISKFD 1051
            G DG+D  + S ++ ++
Sbjct: 1050 GGDGLDPCKASTLTSWE 1066



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 60/94 (63%), Gaps = 3/94 (3%)

Query: 1111 EKFADKFLSNEMAKQDFL-KLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            EK A+K   +    +D L +L   + V +   PGEPVGLLA+Q+ GEPSTQMTLNTFH A
Sbjct: 1211 EKLAEKRRESIAYYRDVLSELATSRRVKAFCDPGEPVGLLAAQAAGEPSTQMTLNTFHSA 1270

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            G    +VT GIPRL+E+L  AS  ++   +  P+
Sbjct: 1271 GSTVTHVTEGIPRLRELLIHAS--VQKAAVIVPV 1302



 Score = 45.1 bits (105), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 20/102 (19%)

Query: 1   CKTCGQR------QFLCPGHFGHIDL-------------VVPVYNPLLFNLLYTLLKRIC 41
           C+TC            C GHFG I +              + V NP L      LL+  C
Sbjct: 90  CQTCAASLTGKYGNERCQGHFGFIGMPRLHPGDALRGEERMSVMNPHLVEEAEQLLQAKC 149

Query: 42  FFCHHFKASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSES 83
           FFCH F+A   +VE+  + L L+ +G I  A  L LD+ S +
Sbjct: 150 FFCHRFRAPSLDVERFRQALRLVDRGLIGEALHL-LDVVSNA 190


>gi|401418664|ref|XP_003873823.1| DNA-directed rna polymerase I largest subunit,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
 gi|322490055|emb|CBZ25317.1| DNA-directed rna polymerase I largest subunit,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1810

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 262/703 (37%), Positives = 389/703 (55%), Gaps = 99/703 (14%)

Query: 362  DMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPER 421
            ++ + + +   KKEGLFR  +MGKRVN ACRSVISPD  +  NE+ +P  FA  LT+PE 
Sbjct: 481  EVYTDVLESFAKKEGLFRMHMMGKRVNQACRSVISPDYLVEPNEVLLPRPFARALTFPEL 540

Query: 422  VT---PWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRIS------IGRKLDT 472
            V+   P  ++ L+  ++NG +++PGATH       + LP  +   +       I R+   
Sbjct: 541  VSSYSPARMMFLKRCVMNGPDVYPGATHL-----EIGLPSGETRFVDLHVPELIRRQHAM 595

Query: 473  SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 532
               A+ Q G  +        V+RH+ DGD ++ NRQPTLHK S+MA+  +VL G KTLR 
Sbjct: 596  KYFAMAQNGSLT--------VHRHILDGDHLIFNRQPTLHKVSMMAYRAKVLSGLKTLRF 647

Query: 533  HYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVS 592
            HY N S+YNADFDGDEMN+H  Q   ++AE   +++AN  Y+ P++G P+R  IQDH+V+
Sbjct: 648  HYVNGSSYNADFDGDEMNIHVVQSLEAKAELECLMDANLNYLVPTSGKPIRGFIQDHVVA 707

Query: 593  AALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKP 652
              LLT +D FL    F Q +Y      +G+  +  K G+ +    +  E++P +PA+ KP
Sbjct: 708  GVLLTLRDNFLPHHTFVQFVY------NGIAPYMHKHGKPLSAHATLTELIP-MPAVLKP 760

Query: 653  EPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKT 712
             PLWTGKQ+I+ +++++T      VVE  G  P+                       S  
Sbjct: 761  RPLWTGKQLISVIVHYVTG-----VVESRGGAPK-----------------------SNG 792

Query: 713  NKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--A 770
              MH     +        P      E   +  K + ++ +  ++++L+ G++ K Q   +
Sbjct: 793  VSMHGTSLIQPSTYTTTDP---HTGELVAASRKCMEDDHVQFFESELITGILCKNQLGSS 849

Query: 771  DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHG 830
            +  +VH + E+YG +  G L  AL R+ ++ LQ  GF+ G+DD+++L++   ER+  L  
Sbjct: 850  NLSVVHVIHEIYGPHMVGELFGALGRVLSMSLQREGFSIGMDDMMLLQE---ERRTAL-- 904

Query: 831  SEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSS 890
                        L   D A   P+ L  +         +A V    M M + L K     
Sbjct: 905  ------------LRELDSA---PLSLPDD---------EATVMPVIMGMATSLQK----- 935

Query: 891  VINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTL 950
               E +   +L+P   N +  MT SGAKGS  N  Q+S  LGQQ  +G+RV RM SGKTL
Sbjct: 936  ---EFVPGRMLRPFPHNQLLTMTMSGAKGSNTNTIQMSLGLGQQLFDGRRVKRMNSGKTL 992

Query: 951  PSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1010
            P F   +   R+ G+ I RF +G+RP EY FH MAGR+GL+DTAVKTSRSG+LQRCL+K 
Sbjct: 993  PPFFVAETRARSLGYAIGRFTSGIRPAEYTFHAMAGRDGLIDTAVKTSRSGHLQRCLVKG 1052

Query: 1011 LECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDAL 1053
            LE L + +D+SVRDA+GS++QF YG DG+D  +TS +  ++ +
Sbjct: 1053 LESLVVQWDHSVRDANGSVIQFLYGGDGLDPMRTSSLQAWEVV 1095



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1129 KLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILT 1188
            +L   + V +    GEPVGLLA+Q+ GEPSTQMTLNTFH AG    +VT GIPRL+E+L 
Sbjct: 1215 ELTTRRRVRAYCDAGEPVGLLAAQAAGEPSTQMTLNTFHSAGSTVTHVTEGIPRLRELLI 1274

Query: 1189 IASKDIKTPVITCPL 1203
             AS  ++   I  P+
Sbjct: 1275 YAS--VQKVAIVVPV 1287


>gi|407863032|gb|EKG07843.1| DNA-directed rna polymerase I largest subunit, putative [Trypanosoma
            cruzi]
          Length = 1800

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 286/797 (35%), Positives = 419/797 (52%), Gaps = 131/797 (16%)

Query: 282  FFLGVVLVPPIKFRLPS----KGGDSVMEHPQTVLLSKVL----QANIYLANAYVNQPDN 333
            FF+  +LVPP+  R+ S    + G ++   PQT  LS VL    Q   Y      + P+ 
Sbjct: 374  FFIDRILVPPLPLRISSGVQVQDGGAISPDPQTRALSSVLGFVEQIECYQVLQNNSTPER 433

Query: 334  AKVIVARWM-------NLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKR 386
              +  A+ +       NLQ  VN ++              I     KKEGLFR  +MGKR
Sbjct: 434  NLLSTAQEIANEINLRNLQVKVNEVYQE------------IMGTFAKKEGLFRMNMMGKR 481

Query: 387  VNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVK---LRDSIINGAEIHPG 443
            VN ACRSVISPD  +  NE+ +P  FA  L++PE+VT +   +   L+  +ING   +PG
Sbjct: 482  VNQACRSVISPDLMVEPNEVLLPRPFARNLSFPEQVTFYASARMNLLKRCVINGPRRYPG 541

Query: 444  ATHYLDKLSTMRLP------PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
            ATH   + +   +       P +  R    R    ++  +              +VYRH+
Sbjct: 542  ATHLEIRQTNGEIRFIELDVPEQTRRQHAARYFAMAQSGVTL------------IVYRHI 589

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
             DGD V+ NRQPTLHKPS+M + V+VL G KTLR HY N +++NADFDGDEMN+H PQ  
Sbjct: 590  LDGDRVVFNRQPTLHKPSMMGYQVKVLSGHKTLRFHYVNGNSFNADFDGDEMNIHVPQSL 649

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
             ++ E   +++AN  Y+ P++G P+R LIQDHI +  LLT +D FL    F QL Y    
Sbjct: 650  EAKVELDVLMDANLNYLVPTSGKPIRGLIQDHIAAGVLLTLRDKFLEHATFVQLTY---- 705

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT-RGRPPF 676
               GL  +  +  +  L      E++P LPAI  P PLWTGKQ+I+ V+ +++  GR P 
Sbjct: 706  --YGLAPYLRQQHEITL-----SELIP-LPAILWPRPLWTGKQLISVVIRYVSGVGRRP- 756

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                      D+   R N+   S         L   + +H    G     +   PG +  
Sbjct: 757  ----------DWM--RINSGGVS---------LRGVSLIH---PGVYNHTI---PGSDVI 789

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSAL 794
                +   + + ++ L+   ++L+ G++ K Q   +   + H V ELYG +  G L  AL
Sbjct: 790  QTVTR---QTMDDDALMFMNSELLMGLMCKNQLGASSMSIAHIVHELYGPHKVGQLFGAL 846

Query: 795  SRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
             R+ +  LQ  GF+ G+DD+ +++++ R R+                 L   D A   P+
Sbjct: 847  GRILSQSLQREGFSIGMDDMCLVQEERRYRQ-----------------LRQLDEA---PL 886

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
             L  +         +AAV    M+  ++L +        E +   ++ P  +N + +MT 
Sbjct: 887  YLPDD---------EAAVMTKIMEYATKLQQ--------EFIPGRMMVPFPRNHLLMMTA 929

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS  N  Q++  LGQQ  +G+RV RM SGKTLP+F   +   R+ G+ I RF +G+
Sbjct: 930  SGAKGSNANATQMALGLGQQLFDGRRVKRMNSGKTLPAFFAHERRARSFGYAIGRFTSGI 989

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
            RP EY  H MAGR+GL+DTAVKTSRSG+LQRCLIK LE L + +D+SVRD++GSIVQF Y
Sbjct: 990  RPPEYTIHAMAGRDGLIDTAVKTSRSGHLQRCLIKGLESLMVHWDHSVRDSNGSIVQFTY 1049

Query: 1035 GEDGVDVHQTSFISKFD 1051
            G DG+D  + S ++ ++
Sbjct: 1050 GGDGLDPCKASTLTSWE 1066



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 60/94 (63%), Gaps = 3/94 (3%)

Query: 1111 EKFADKFLSNEMAKQDFL-KLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            EK A+K   +    +D L +L   + V +   PGEPVGLLA+Q+ GEPSTQMTLNTFH A
Sbjct: 1208 EKLAEKRRESIAYYRDVLSELATTRRVKAFCDPGEPVGLLAAQAAGEPSTQMTLNTFHSA 1267

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            G    +VT GIPRL+E+L  AS  ++   +  P+
Sbjct: 1268 GSTVTHVTEGIPRLRELLIHAS--VQKAAVIVPV 1299



 Score = 45.1 bits (105), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 20/102 (19%)

Query: 1   CKTCGQR------QFLCPGHFGHIDL-------------VVPVYNPLLFNLLYTLLKRIC 41
           C+TC            C GHFG I +              + V NP L      LL+  C
Sbjct: 90  CQTCAASLTGKYGNERCQGHFGFIGMPRLHPGDALRGEERMSVMNPHLVEEAEQLLQAKC 149

Query: 42  FFCHHFKASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSES 83
           FFCH F+A   +VE+  + L L+ +G I  A  L LD+ S +
Sbjct: 150 FFCHRFRAPSLDVERYRQALRLVDRGLIGEALHL-LDVVSNA 190


>gi|157867323|ref|XP_001682216.1| putative DNA-directed rna polymerase I largest subunit [Leishmania
            major strain Friedlin]
 gi|68125668|emb|CAJ04022.1| putative DNA-directed rna polymerase I largest subunit [Leishmania
            major strain Friedlin]
          Length = 1809

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 262/703 (37%), Positives = 389/703 (55%), Gaps = 99/703 (14%)

Query: 362  DMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPER 421
            ++ + + +   KKEGLFR  +MGKRVN ACRSVISPD  +  NE+ +P  FA  LT+PE 
Sbjct: 481  EVYTDVLEGFAKKEGLFRMHMMGKRVNQACRSVISPDYLVEPNEVLLPRPFARALTFPEL 540

Query: 422  VT---PWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRIS------IGRKLDT 472
            V+   P  ++ L+  ++NG +++PGATH       + LP  +   +       I R+   
Sbjct: 541  VSSYSPARMMFLKRCVMNGPDVYPGATHL-----EIGLPSGETRFVDLHVPELIRRQHAM 595

Query: 473  SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 532
               A+ Q G  +        V+RH+ DGD ++ NRQPTLHK S+MA+  +VL G KTLR 
Sbjct: 596  KYFAMAQNGSLT--------VHRHILDGDHLIFNRQPTLHKVSMMAYRAKVLSGLKTLRF 647

Query: 533  HYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVS 592
            HY N S+YNADFDGDEMN+H  Q   ++AE   +++AN  Y+ P++G P+R  IQDH+V+
Sbjct: 648  HYVNGSSYNADFDGDEMNIHVVQSLEAKAELECLMDANLNYLVPTSGKPIRGFIQDHVVA 707

Query: 593  AALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKP 652
              LLT +D FL    F Q +Y      +G+  +  K G+ +    +  E++P +PA+ KP
Sbjct: 708  GVLLTLRDNFLPHHTFVQFVY------NGIAPYMQKQGKPLSALATLTELIP-VPAVLKP 760

Query: 653  EPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKT 712
             PLWTGKQ+I+ +++++T      VVE  G  P+                       S  
Sbjct: 761  RPLWTGKQLISVIVHYVTG-----VVESRGGAPR-----------------------SNG 792

Query: 713  NKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--A 770
              MH     +        P      E   +  K + ++ +  ++++L+ G++ K Q   +
Sbjct: 793  VSMHGTSLIQPSTYTTTDP---HTGELVTASRKCMEDDHVQFFESELITGILCKNQLGSS 849

Query: 771  DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHG 830
            +  +VH + E+YG +  G L  AL R+ ++ LQ  GF+ G+DD+++L++   ER+  L  
Sbjct: 850  NLSVVHVIHEIYGPHMVGELFGALGRVLSMSLQREGFSIGMDDMILLQE---ERRTAL-- 904

Query: 831  SEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSS 890
                        L   D A   P+ L  +         +A V    M M + L K     
Sbjct: 905  ------------LRELDSA---PLNLPDD---------EARVMPVIMGMATSLQK----- 935

Query: 891  VINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTL 950
               E +   +L+P   N +  MT SGAKGS  N  Q+S  LGQQ  +G+RV RM SGKTL
Sbjct: 936  ---EFVPGRMLRPFPHNQLLTMTMSGAKGSNTNAIQMSLGLGQQLFDGRRVKRMNSGKTL 992

Query: 951  PSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1010
            P F   +   R+ G+ I RF +G+RP EY FH MAGR+GL+DTAVKTSRSG+LQRCL+K 
Sbjct: 993  PPFFVAEKRARSLGYAIGRFTSGIRPAEYTFHAMAGRDGLIDTAVKTSRSGHLQRCLVKG 1052

Query: 1011 LECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDAL 1053
            LE L + +D+SVRDA+GS++QF YG DG+D  +TS +  ++ +
Sbjct: 1053 LESLVVQWDHSVRDANGSVIQFLYGGDGLDPMRTSSLQAWEVV 1095



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1129 KLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILT 1188
            +L   + V +    GEPVGLLA+Q+ GEPSTQMTLNTFH AG    +VT GIPRL+E+L 
Sbjct: 1215 ELTTRRRVRAYCDAGEPVGLLAAQAAGEPSTQMTLNTFHSAGSTVTHVTEGIPRLRELLI 1274

Query: 1189 IASKDIKTPVITCPL 1203
             AS  ++   I  P+
Sbjct: 1275 YAS--VQKVAIVVPV 1287


>gi|398013269|ref|XP_003859827.1| DNA-directed rna polymerase I largest subunit, putative [Leishmania
            donovani]
 gi|322498044|emb|CBZ33120.1| DNA-directed rna polymerase I largest subunit, putative [Leishmania
            donovani]
          Length = 1810

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 262/703 (37%), Positives = 388/703 (55%), Gaps = 99/703 (14%)

Query: 362  DMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPER 421
            ++ + + +   KKEGLFR  +MGKRVN ACRSVISPD  +  NE+ +P  FA  LT+PE 
Sbjct: 481  EVYTDVLEGFAKKEGLFRMHMMGKRVNQACRSVISPDYLVEPNEVLLPRPFARALTFPEL 540

Query: 422  VT---PWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRIS------IGRKLDT 472
            V+   P  +V L+  ++NG +++PGATH       + LP  +   +       I R+   
Sbjct: 541  VSSYSPARMVFLKRCVMNGPDVYPGATHL-----EIGLPSGETRFVDLHVPELIRRQHAM 595

Query: 473  SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 532
               A+ Q G  +        V+RH+ DGD ++ NRQPTLHK S+MA+  +VL G KTLR 
Sbjct: 596  KYFAMAQNGSLT--------VHRHILDGDHLIFNRQPTLHKVSMMAYRAKVLSGLKTLRF 647

Query: 533  HYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVS 592
            HY N S+YNADFDGDEMN+H  Q   ++AE   +++AN  Y+ P++G P+R  IQDH+V+
Sbjct: 648  HYVNGSSYNADFDGDEMNIHVVQSLEAKAELECLMDANLNYLVPTSGKPIRGFIQDHVVA 707

Query: 593  AALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKP 652
              LLT +D FL    F Q +Y      +G+  +  K G+ +    +   ++P +PA+ KP
Sbjct: 708  GVLLTLRDNFLPHHTFVQFVY------NGIAPYMQKQGKPLSAHATLTGLIP-MPAVLKP 760

Query: 653  EPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKT 712
             PLWTGKQ+I+ +++++T      VVE  G  P+                       S  
Sbjct: 761  RPLWTGKQLISVIVHYVTG-----VVESRGGAPR-----------------------SNG 792

Query: 713  NKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--A 770
              MH     +        P      E   +  K + ++ +  ++++L+ G++ K Q   +
Sbjct: 793  VSMHGTSLIQPSTYTTTDP---HTGELVTASRKCMEDDHVQFFESELITGILCKNQLGSS 849

Query: 771  DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHG 830
            +  +VH + E+YG +  G L  AL R+ ++ LQ  GF+ G+DD+++L++   ER+  L  
Sbjct: 850  NLSVVHVIHEIYGPHMVGELFGALGRVLSMSLQREGFSIGMDDMMLLQE---ERRTAL-- 904

Query: 831  SEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSS 890
                        L   D A   P+ L  +         +A V    M M + L K     
Sbjct: 905  ------------LRELDSA---PLSLPDD---------EARVMPVIMGMATSLQK----- 935

Query: 891  VINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTL 950
               E +   +L+P   N +  MT SGAKGS  N  Q+S  LGQQ  +G+RV RM SGKTL
Sbjct: 936  ---EFVPGRMLRPFPYNQLLTMTMSGAKGSNTNAIQMSLGLGQQLFDGRRVKRMNSGKTL 992

Query: 951  PSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1010
            P F   +   R+ G+ I RF +G+RP EY FH MAGR+GL+DTAVKTSRSG+LQRCL+K 
Sbjct: 993  PPFFVAEKRARSLGYAIGRFTSGIRPAEYTFHAMAGRDGLIDTAVKTSRSGHLQRCLVKG 1052

Query: 1011 LECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDAL 1053
            LE L + +D+SVRDA+GS++QF YG DG+D  +TS +  ++ +
Sbjct: 1053 LESLVVQWDHSVRDANGSVIQFLYGGDGLDPMRTSSLQAWEVV 1095



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1129 KLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILT 1188
            +L   + V +    GEPVGLLA+Q+ GEPSTQMTLNTFH AG    +VT GIPRL+E+L 
Sbjct: 1215 ELTTRRRVRAYCDAGEPVGLLAAQAAGEPSTQMTLNTFHSAGSTVTHVTEGIPRLRELLI 1274

Query: 1189 IASKDIKTPVITCPL 1203
             AS  ++   I  P+
Sbjct: 1275 YAS--VQKVAIVVPV 1287


>gi|146082888|ref|XP_001464622.1| putative DNA-directed rna polymerase I largest subunit [Leishmania
            infantum JPCM5]
 gi|134068715|emb|CAM67019.1| putative DNA-directed rna polymerase I largest subunit [Leishmania
            infantum JPCM5]
          Length = 1810

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 262/703 (37%), Positives = 388/703 (55%), Gaps = 99/703 (14%)

Query: 362  DMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPER 421
            ++ + + +   KKEGLFR  +MGKRVN ACRSVISPD  +  NE+ +P  FA  LT+PE 
Sbjct: 481  EVYTDVLEGFAKKEGLFRMHMMGKRVNQACRSVISPDYLVEPNEVLLPRPFARALTFPEL 540

Query: 422  VT---PWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRIS------IGRKLDT 472
            V+   P  +V L+  ++NG +++PGATH       + LP  +   +       I R+   
Sbjct: 541  VSSYSPARMVFLKRCVMNGPDVYPGATHL-----EIGLPSGETRFVDLHVPELIRRQHAM 595

Query: 473  SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 532
               A+ Q G  +        V+RH+ DGD ++ NRQPTLHK S+MA+  +VL G KTLR 
Sbjct: 596  KYFAMAQNGSLT--------VHRHILDGDHLIFNRQPTLHKVSMMAYRAKVLSGLKTLRF 647

Query: 533  HYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVS 592
            HY N S+YNADFDGDEMN+H  Q   ++AE   +++AN  Y+ P++G P+R  IQDH+V+
Sbjct: 648  HYVNGSSYNADFDGDEMNIHVVQSLEAKAELECLMDANLNYLVPTSGKPIRGFIQDHVVA 707

Query: 593  AALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKP 652
              LLT +D FL    F Q +Y      +G+  +  K G+ +    +   ++P +PA+ KP
Sbjct: 708  GVLLTLRDNFLPHHTFVQFVY------NGIAPYMQKQGKPLSAHATLTGLIP-MPAVLKP 760

Query: 653  EPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKT 712
             PLWTGKQ+I+ +++++T      VVE  G  P+                       S  
Sbjct: 761  RPLWTGKQLISVIVHYVTG-----VVESRGGAPR-----------------------SNG 792

Query: 713  NKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--A 770
              MH     +        P      E   +  K + ++ +  ++++L+ G++ K Q   +
Sbjct: 793  VSMHGTSLIQPSTYTTTDP---HTGELVTASRKCMEDDHVQFFESELITGILCKNQLGSS 849

Query: 771  DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHG 830
            +  +VH + E+YG +  G L  AL R+ ++ LQ  GF+ G+DD+++L++   ER+  L  
Sbjct: 850  NLSVVHVIHEIYGPHMVGELFGALGRVLSMSLQREGFSIGMDDMMLLQE---ERRTAL-- 904

Query: 831  SEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSS 890
                        L   D A   P+ L  +         +A V    M M + L K     
Sbjct: 905  ------------LRELDSA---PLSLPDD---------EARVMPVIMGMATSLQK----- 935

Query: 891  VINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTL 950
               E +   +L+P   N +  MT SGAKGS  N  Q+S  LGQQ  +G+RV RM SGKTL
Sbjct: 936  ---EFVPGRMLRPFPYNQLLTMTMSGAKGSNTNAIQMSLGLGQQLFDGRRVKRMNSGKTL 992

Query: 951  PSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1010
            P F   +   R+ G+ I RF +G+RP EY FH MAGR+GL+DTAVKTSRSG+LQRCL+K 
Sbjct: 993  PPFFVAEKRARSLGYAIGRFTSGIRPAEYTFHAMAGRDGLIDTAVKTSRSGHLQRCLVKG 1052

Query: 1011 LECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDAL 1053
            LE L + +D+SVRDA+GS++QF YG DG+D  +TS +  ++ +
Sbjct: 1053 LESLVVQWDHSVRDANGSVIQFLYGGDGLDPMRTSSLQAWEVV 1095



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1129 KLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILT 1188
            +L   + V +    GEPVGLLA+Q+ GEPSTQMTLNTFH AG    +VT GIPRL+E+L 
Sbjct: 1215 ELTTRRRVRAYCDAGEPVGLLAAQAAGEPSTQMTLNTFHSAGSTVTHVTEGIPRLRELLI 1274

Query: 1189 IASKDIKTPVITCPL 1203
             AS  ++   I  P+
Sbjct: 1275 YAS--VQKVAIVVPV 1287


>gi|162606436|ref|XP_001713248.1| DNA-directed RNA polymerase I chain-like protein [Guillardia theta]
 gi|12580714|emb|CAC27032.1| DNA-directed RNA polymerase I chain-like protein [Guillardia theta]
          Length = 1434

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 315/966 (32%), Positives = 456/966 (47%), Gaps = 155/966 (16%)

Query: 273  FGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVM----EHPQTVLLSKVLQAN--IYLANA 326
            F K    SIFF+  +LV P +FR P K G +      ++P     S +L+ N  I L   
Sbjct: 301  FLKFNTSSIFFIDYILVTPSRFR-PEKLGTTFNGFREKNPHNFFYSLILKINQQILLLIV 359

Query: 327  YVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKR 386
              N   N+K +      L+  +   F G     ++ + + I   LEKK GL R  +MGKR
Sbjct: 360  SENHKFNSKFMDKTITQLENIIENFFIGTIQLKKKKIPNSIKNQLEKKSGLIRMNIMGKR 419

Query: 387  VNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL---------------R 431
            V  + RSVI+PDP+L   E+G+P  FA  L  PE +   N++K+                
Sbjct: 420  VLNSARSVIAPDPFLKTFEVGVPKEFAKDLYVPESINLINILKVFLDFLKIKNFKKKKLI 479

Query: 432  DSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGK 491
              I+NG +I      +L KL           +ISI  K      ++    K   N+F   
Sbjct: 480  LEILNGNKISISQQDFLFKLK----------KISISYKY-FKLFSLFSKNKYGFNKF--- 525

Query: 492  MVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNV 551
               R+L+  D+ ++NRQP+LHK SIMAH VR+LK  K L++HY+NC++YNADFDGDEMN+
Sbjct: 526  --LRNLKKNDISILNRQPSLHKTSIMAHKVRILKSSKCLKLHYSNCNSYNADFDGDEMNL 583

Query: 552  HFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL 611
            H PQ+ +S +E+  I    NQ   PSNG PLR LIQD I+S  LLTKKDTF N++  C  
Sbjct: 584  HIPQNYLSISESLYIAYVTNQNTIPSNGLPLRGLIQDQIISGVLLTKKDTFFNKN--CID 641

Query: 612  LYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITR 671
            ++ S V                  S  E+++L L P+I KP              N +  
Sbjct: 642  IFLSNV-----------------FSNKERDILEL-PSIIKP--------------NFLWT 669

Query: 672  GRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKP 731
            G+  F +                              L KTNK  +     +   +E K 
Sbjct: 670  GKQIFSI------------------------------LCKTNKFKQ-----RNFFLETKT 694

Query: 732  GEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFA--DYGLVHTVQELYGSNTAGT 789
                   K  S      E ++L  K  L++GVID +Q     +G  H   E +GS T  T
Sbjct: 695  -------KLPSSIIGSDENRILFRKGILLKGVIDSSQLGRNKFGFFHAFYENFGSVTGDT 747

Query: 790  LLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKN--HLHGSEE---IGKRVHLEALE 844
            ++S LS  F++F   +  +C + D  +    E++ KN   L+       I K   +  L 
Sbjct: 748  IMSRLSIFFSIFQVFYNHSCSLQDFFLKTKMEKKLKNIYKLYSKLSLALIKKSFSIFGLC 807

Query: 845  LEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPT 904
            ++     +    K  + K++    +           S LN   S ++ N  +  GL    
Sbjct: 808  IDSRIIEENSFYKHILSKSLISNSNQKSVILTKLQKSYLNIIYSLNIEN-FIRLGLEIIN 866

Query: 905  GKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGG 964
              N    M + G+KGS +N  QI   LGQ ELEG  +P+  +GKTLP F      P + G
Sbjct: 867  TSNGFLKMISYGSKGSNINLFQICLLLGQTELEGSCIPKTFTGKTLPGFLFNSLDPISNG 926

Query: 965  FIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD 1024
            FI +RF TG+ P  Y+FHCMAGREGL+DTA+KTS+SGY+QR +IK+LE LKI+YD+++R 
Sbjct: 927  FIPERFFTGIHPNCYFFHCMAGREGLLDTAIKTSQSGYIQRNIIKHLENLKINYDFTLRM 986

Query: 1025 ADGSIVQFCYGEDGVDVHQTSFISKFD-ALAARERGRGRGRNKFCDKGSHTFVMGRNQEM 1083
            +   I  F + +DG  +    FISK         R      N F +       M  N   
Sbjct: 987  SHNKINSFIFSDDGQRITSIDFISKIRWKFQNSLRTENDDNNLFNN-------MKLNSNF 1039

Query: 1084 IYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVL------ 1137
              K  +                 K N +    + +S    K++F   V ++ +L      
Sbjct: 1040 TKKNINFH---------------KINFK----QIISKRSCKKNFGSFVSYQNILNSNYFE 1080

Query: 1138 SLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTP 1197
            +L +PGE  G+L  Q++GEP TQMTLNTFH AG+   +   G+PRL+E+L   SK+    
Sbjct: 1081 NLIEPGESTGILCGQAIGEPCTQMTLNTFHYAGKISSHGKQGLPRLKEMLLYNSKNSTNF 1140

Query: 1198 VITCPL 1203
            ++ C L
Sbjct: 1141 LVNCRL 1146



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C  C      C GHFGHIDL++PV NPL  N L  +L   CF+C
Sbjct: 69  CDICKLSYINCSGHFGHIDLLIPVPNPLTKNFLLFVLNLNCFYC 112


>gi|316996999|dbj|BAJ52627.1| RNA polymerase I largest subunit [Stephanoeca diplocostata]
          Length = 1031

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 280/687 (40%), Positives = 375/687 (54%), Gaps = 107/687 (15%)

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            NVH PQ+EV+RAEA +I +A+NQY+    G PLR LIQDH+VS + +  +D F  +DEF 
Sbjct: 1    NVHLPQNEVARAEAADIAHAHNQYIS-LGGSPLRGLIQDHVVSGSRMICRDAFFEKDEFQ 59

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
            QLLY++           G  G  +       + +P  PA+ KP  LWTGKQ+I+++L ++
Sbjct: 60   QLLYAA----------MGDTGGTI-------DYVP--PAMLKPRQLWTGKQIISSMLLNL 100

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
            TRGR                              N KGK    N       G     + G
Sbjct: 101  TRGRTGL---------------------------NLKGKTQTNNAWTAPTIGPHD--IPG 131

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVR-GVIDKAQFADY--GLVHTVQELYGSNT 786
             P    E         +L  E  +++++ L+  G++DK Q      GLVH  QE+YG+  
Sbjct: 132  LPAGTFEG-------AQLEGEGTVLFRDGLMLIGILDKKQIGSSAKGLVHACQEVYGNAV 184

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER-----KNHLHGSEEIGKRVHLE 841
            AG LL+AL RLFT   + H  T G++D+L+  + E ER     K  L G  E  K  +  
Sbjct: 185  AGALLAALGRLFTAMNKFHAHTFGIEDVLLNAEGENERNAVLAKARLCGFPETAKYTNAP 244

Query: 842  ALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLL 901
                     +D   LK  +E   R   +  +A  D  M S  ++H  ++++       LL
Sbjct: 245  P-------NVDAATLKKNVETIFRDSKE--MAGLDAVMMSANSEH-QAAIVKATCPNRLL 294

Query: 902  KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 961
            KP   N +  M  +GAKGS VN  QIS  LGQQ LEGKRVP MVSGKTLP F  +D + R
Sbjct: 295  KPFPHNHLQAMVQTGAKGSTVNATQISCLLGQQALEGKRVPVMVSGKTLPVFPQFDPSAR 354

Query: 962  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1021
            AGG I+DRFLTGL P EYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K++E L++ YD +
Sbjct: 355  AGGMILDRFLTGLSPPEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKHMEDLQVGYDLT 414

Query: 1022 VRDADGSIVQFCYGEDGVDVHQTS-----------FISKFDALAARER---------GRG 1061
            VRDAD S+VQF YGEDG+DV +T+           +++  D   A             + 
Sbjct: 415  VRDADKSVVQFMYGEDGLDVSKTAQLDNFPFMQQNYMALLDKFGAANLESVFPGDFGTKA 474

Query: 1062 RGRNKFCDKGSHT---FVMGRNQEMIYKKCSGQLDAS-NAYIMELPDALKDNAEKFADKF 1117
            R   K    GS +    +     +  Y   S    A+ +AY+  +PD +  +  K   K 
Sbjct: 475  RKLMKKMSDGSKSGDPVLSKLRPDRYYGSVSEDFSAAVDAYVKSMPDVVTTSGRKVTPKK 534

Query: 1118 LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVT 1177
            +          +L+  K+  SLA PGEPVG+LA+Q++GEPSTQMTLNTFH AGR +MNVT
Sbjct: 535  MK---------QLMLLKWFRSLADPGEPVGVLAAQAIGEPSTQMTLNTFHFAGRSDMNVT 585

Query: 1178 LGIPRLQEILTIASKDIKTPVITCPLL 1204
            LGIPRL+EIL  AS +IKTP++  PL+
Sbjct: 586  LGIPRLREILMTASVNIKTPIMKAPLI 612


>gi|162944844|gb|ABY20491.1| LD04803p [Drosophila melanogaster]
          Length = 1410

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 362/1239 (29%), Positives = 549/1239 (44%), Gaps = 260/1239 (20%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C+TCGQ    C GHFG++DL +PV++   F     +L+ IC  C H              
Sbjct: 94   CETCGQGLNECIGHFGYLDLALPVFHIGHFRSTINILQMICKVCAH-------------- 139

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
              +++K                   PED  +  K    +  P  +Y   + L  Q     
Sbjct: 140  --VMLK-------------------PEDRQLYEKK---LHNPNFSYLGKKALHVQ----- 170

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGE 180
              A+AK         + TKC +C + N  + K   G + +   P+   + + +   N+ E
Sbjct: 171  MLAKAK---------KVTKCPHCGSPNGGVKKGP-GLLKILHDPYKGRKMDSLFTSNMNE 220

Query: 181  TFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSG 240
                 +  +DL              N T  G   TA                        
Sbjct: 221  MLRSTQTNRDL--------------NSTL-GNYSTAEE---------------------- 243

Query: 241  PLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS-- 298
             L P  V D+ E++ + +  L    S          A      +  V VPP   R PS  
Sbjct: 244  -LTPLMVLDLFEQIPQRDVALLGMCS--------HDAHPKHLIVTRVFVPPACIR-PSVL 293

Query: 299  ---KGG----DSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVL 351
               K G    D  M+  + +L++ V+Q ++             ++I   W  LQ  V + 
Sbjct: 294  SEVKAGTTEDDLTMKQSEILLINDVIQRHMATGG-------KIELIHEDWDFLQLHVALY 346

Query: 352  FDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEI 406
            F  + +    +MA      GI Q L+ K+G FR  L GKRV+++ R+VISPDP L +N++
Sbjct: 347  FHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQV 406

Query: 407  GIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISI 466
            G+P   A  LTYPERV P N+  +R+ + NG  +HPGA +   + S+       K  ++ 
Sbjct: 407  GVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSSF------KKYLAY 460

Query: 467  GRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKG 526
            G     +R  + Q  K  D      +V RHL+DGD+VL NRQP+LHK SIM H  +V + 
Sbjct: 461  G-----NREKVAQELKCGD------VVERHLRDGDIVLFNRQPSLHKMSIMCHRAKV-QP 508

Query: 527  EKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLI 586
            ++T R +   C+ YNADFDGDEMN+H PQ E +RAEA  ++   +  V P NG+ L +  
Sbjct: 509  QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAAT 568

Query: 587  QDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLL 646
            QD I    LLT+K+ FL ++E  QL             F       + I       LP  
Sbjct: 569  QDFITGGYLLTQKEVFLTKEEAMQLA----------ACFLANEDSTMHIK------LPP- 611

Query: 647  PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDK 706
            PA+ KP  LWTGKQ+ + ++                  P D  + R N   +S     +K
Sbjct: 612  PALLKPRRLWTGKQMFSLLMR-----------------PNDDSQVRLNMVNKSRNYTRNK 654

Query: 707  GKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
               S  + +H                                     I  ++L+ GV+DK
Sbjct: 655  DLCSNDSWIH-------------------------------------IRNSELMCGVMDK 677

Query: 767  AQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL----ILKD 819
            A         + + +   +G + A   +  L+R+ + FLQ  GF+ G+ D+     +L+ 
Sbjct: 678  ATMGSGTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQNRGFSFGISDVTPSKKLLQH 737

Query: 820  KERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKM 879
            KE    N      E  + +    L+ + G   +       +E  M            ++ 
Sbjct: 738  KELLLNNGYAKCNEYIELLKAGTLQCQPGCTPE-----ETLESVM------------LRE 780

Query: 880  TSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGK 939
             S + +  + +   EL       PT  N   +M  SG+KGS +N  Q+ + +GQQ + GK
Sbjct: 781  LSAIREQAAKTCFAEL------HPT--NSALIMALSGSKGSNINISQMIACVGQQAISGK 832

Query: 940  RVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSR 999
            RVP     + LP F      P A GF+ + F +GL P E++FH MAGREGLVDTAVKT+ 
Sbjct: 833  RVPNGFENRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAE 892

Query: 1000 SGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV-------HQTSFISKFDA 1052
            +GYLQR L+K LE L + YD +VR+A   +V   YG DG+D             + ++D 
Sbjct: 893  TGYLQRRLVKCLEDLVVHYDGTVRNAVNEMVDTIYGGDGLDPVSMETRNKPVDLVHQYDN 952

Query: 1053 LAARERGRGRGRNKFCDKGSHTF-VMGRNQEMIYKKCSGQLDASNAY--IMELPDALKDN 1109
            L A +  +G+ R    ++ S     + R  E    +   +LD  N    + +    L+  
Sbjct: 953  LRA-QHPQGKDRPLNAEEMSEALETLLRTPEFAEARDDFKLDVRNHINTVSKRIGQLQKR 1011

Query: 1110 AEKFAD-----KFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLN 1164
             EK  D     + L+ E   Q F++ +  ++  ++ +PG  VG +A+QS+GEP TQMTL 
Sbjct: 1012 YEKCIDLCHQIECLTTEQLLQ-FVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLK 1070

Query: 1165 TFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            TFH AG   MN+T G+PR+ EI+  A+K I TP+IT  L
Sbjct: 1071 TFHFAGVASMNITQGVPRIVEIIN-ATKTISTPIITAEL 1108


>gi|384871708|gb|AFI25034.1| FI19733p1 [Drosophila melanogaster]
          Length = 1410

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 361/1239 (29%), Positives = 548/1239 (44%), Gaps = 260/1239 (20%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C+TCGQ    C GHFG++DL +PV++   F     +L+ IC  C H              
Sbjct: 94   CETCGQGLNECIGHFGYLDLALPVFHIGHFRSTINILQMICKVCAH-------------- 139

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
              +++K                   PED  +  K    +  P  +Y   + L  Q     
Sbjct: 140  --VMLK-------------------PEDRQLYEKK---LHNPNFSYLGKKALHVQ----- 170

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGE 180
              A+AK         + TKC +C + N  + K   G + +   P+   + + +   N+ E
Sbjct: 171  MLAKAK---------KVTKCPHCGSPNGGVKKGP-GLLKILHDPYKGRKMDSLFTSNMNE 220

Query: 181  TFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSG 240
                 +  +DL              N T  G   TA                        
Sbjct: 221  MLRSTQTNRDL--------------NSTL-GNYSTAEE---------------------- 243

Query: 241  PLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS-- 298
             L P  V D+ E++ + +  L    S          A      +  V VPP   R PS  
Sbjct: 244  -LTPLMVLDLFEQIPQRDVALLGMCS--------HDAHPKHLIVTRVFVPPACIR-PSVL 293

Query: 299  ---KGG----DSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVL 351
               K G    D  M+  + +L++ V+Q ++             ++I   W  LQ  V + 
Sbjct: 294  SEVKAGTTEDDLTMKQSEILLINDVIQRHMATGG-------KIELIHEDWDFLQLHVALY 346

Query: 352  FDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEI 406
            F  + +    +MA      GI Q L+ K+G FR  L GKRV+++ R+VISPDP L +N++
Sbjct: 347  FHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQV 406

Query: 407  GIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISI 466
            G+P   A  LTYPERV P N+  +R+ + NG  +HPGA +   + S+       K  ++ 
Sbjct: 407  GVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSSF------KKYLAY 460

Query: 467  GRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKG 526
            G     +R  + Q  K  D      +V RHL+DGD+VL NRQP+LHK SIM H  +V + 
Sbjct: 461  G-----NREKVAQELKCGD------VVERHLRDGDIVLFNRQPSLHKMSIMCHRAKV-QP 508

Query: 527  EKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLI 586
            ++T R +   C+ YNADFDGDEMN+H PQ E +RAEA  ++   +  V P NG+ L +  
Sbjct: 509  QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAAT 568

Query: 587  QDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLL 646
            QD I    LLT+K+ FL ++E  QL             F       + I       LP  
Sbjct: 569  QDFITGGYLLTQKEVFLTKEEAMQLA----------ACFLANEDSTMHIK------LPP- 611

Query: 647  PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDK 706
            PA+ KP  LWTGKQ+ + ++                  P D  + R N   +      +K
Sbjct: 612  PALLKPRRLWTGKQMFSLLMR-----------------PNDDSQVRLNMVNKGRNYTRNK 654

Query: 707  GKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
               S  + +H                                     I  ++L+ GV+DK
Sbjct: 655  DLCSNDSWIH-------------------------------------IRNSELMCGVMDK 677

Query: 767  AQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL----ILKD 819
            A         + + +   +G + A   +  L+R+ + FLQ  GF+ G+ D+     +L+ 
Sbjct: 678  ATMGSGTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQNRGFSFGISDVTPSKKLLQH 737

Query: 820  KERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKM 879
            KE    N      E  + +    L+ + G   +       +E  M            ++ 
Sbjct: 738  KELLLNNGYAKCNEYIELLKAGTLQCQPGCTPE-----ETLESVM------------LRE 780

Query: 880  TSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGK 939
             S + +  + +   EL       PT  N   +M  SG+KGS +N  Q+ + +GQQ + GK
Sbjct: 781  LSAIREQAAKTCFAEL------HPT--NSALIMALSGSKGSNINISQMIACVGQQAISGK 832

Query: 940  RVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSR 999
            RVP     + LP F      P A GF+ + F +GL P E++FH MAGREGLVDTAVKT+ 
Sbjct: 833  RVPNGFENRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAE 892

Query: 1000 SGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV-------HQTSFISKFDA 1052
            +GYLQR L+K LE L + YD +VR+A   +V   YG DG+D             + ++D 
Sbjct: 893  TGYLQRRLVKCLEDLVVHYDGTVRNAVNEMVDTIYGGDGLDPVSMETRNKPVDLVHQYDN 952

Query: 1053 LAARERGRGRGRNKFCDKGSHTF-VMGRNQEMIYKKCSGQLDASNAY--IMELPDALKDN 1109
            L A +  +G+ R    ++ S     + R  E    +   +LD  N    + +    L+  
Sbjct: 953  LRA-QHPQGKDRPLNAEEMSEALETLLRTPEFAEARDDFKLDVRNHINTVSKRIGQLQKR 1011

Query: 1110 AEKFAD-----KFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLN 1164
             EK  D     + L+ E   Q F++ +  ++  ++ +PG  VG +A+QS+GEP TQMTL 
Sbjct: 1012 YEKCIDLCHQIECLTTEQLLQ-FVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLK 1070

Query: 1165 TFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            TFH AG   MN+T G+PR+ EI+  A+K I TP+IT  L
Sbjct: 1071 TFHFAGVASMNITQGVPRIVEIIN-ATKTISTPIITAEL 1108


>gi|328766444|gb|EGF76498.1| hypothetical protein BATDEDRAFT_14837 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1407

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 314/952 (32%), Positives = 469/952 (49%), Gaps = 146/952 (15%)

Query: 289  VPPIKFRLPSKGGD-SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARW--MNLQ 345
            VPP+  R PS G + S  E   TVL S+++  N  +    ++      +++  W  + LQ
Sbjct: 255  VPPVCIR-PSVGQENSSTEDDLTVLASEIVDINTKIRACMLDG-TQTPLLMEYWDFLQLQ 312

Query: 346  QSVNVLFDGKNAAGQRD-----MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
             ++ +  D              +  G CQ L+ K G FR  L GKRV+++ R+VISPDP 
Sbjct: 313  CAMYITSDLPGIPTHLQGSLPKIKKGFCQRLKGKHGRFRGNLSGKRVDFSGRTVISPDPN 372

Query: 401  LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK 460
            L ++++ +P   A  LTYPERVTP+N+ +LR ++ING ++HPGAT+   + + M      
Sbjct: 373  LRIDQVAVPERVAKVLTYPERVTPYNIERLRMNVINGPDVHPGATYVAAQSTGM------ 426

Query: 461  KMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHV 520
            K  +  G +            + +D    G  V RHLQD DVVL NRQP+LHK SIM+H 
Sbjct: 427  KKFLKFGNR-----------NRTADELQYGDTVERHLQDDDVVLFNRQPSLHKLSIMSHF 475

Query: 521  VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGD 580
            V+V +  +T R +   C+ YNADFDGDEMN+H PQ E +RAEA  ++   N  V P NG+
Sbjct: 476  VKV-RPWRTFRFNECVCTPYNADFDGDEMNLHVPQTEEARAEAMELMGTKNNLVTPRNGE 534

Query: 581  PLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQ 640
            PL +  QD I ++ LL++KD F +R +F Q+    G S   +                  
Sbjct: 535  PLIAATQDFITASYLLSRKDVFYDRSQFSQICSYLGDSLLNID----------------- 577

Query: 641  EVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSD 700
              LP  P I KP  LWTGKQV   +L      RP                      ++S 
Sbjct: 578  --LP-PPTILKPFALWTGKQVFGVML------RP---------------------SQESK 607

Query: 701  RKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKEL-------SEEKLL 753
               N + K    +K  KD+ G    +  G         K+K++   L       ++  L 
Sbjct: 608  IIINLETKCRTFDKDQKDRHG----IAFG---------KSKTQAGHLFHPSFCPNDGYLF 654

Query: 754  IYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
             + ++L+ GVIDKA   D     + + V   YG   A   ++ +++L   +L   GF+ G
Sbjct: 655  FHNSELMSGVIDKAIIGDGNKKSMFYVVLRDYGPPAAADCMNKIAKLSARWLANQGFSIG 714

Query: 811  VDDLLILKDKERERKNHLHGSEEIGKRVHLE-ALELEDG-AEIDPIKLKSEIEKAMRGGG 868
            ++D+                  + G R+  E  + +E G  + D     S         G
Sbjct: 715  INDV------------------QPGDRLRTEKEITVEKGYTDCDETIALSRQNLLPNQPG 756

Query: 869  DAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK-NWISLMTTSGAKGSKVNFQQI 927
                   + K++  L+K      I + + +   +   K N   +M+  G+KGSK+N  Q+
Sbjct: 757  CNQEQTLESKLSGILSK------IRDDVGQVCFQELNKYNAPLIMSLCGSKGSKINVSQM 810

Query: 928  SSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGR 987
             + +GQQ + G R+P     ++LP F      P A GF+ + F +GL P E+ FH ++GR
Sbjct: 811  VACVGQQIISGSRIPNGFGDRSLPHFAKNSKTPPAKGFVGNSFYSGLSPTEFLFHAVSGR 870

Query: 988  EGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD---VHQT 1044
            EGLVDTAVKT+ +GY+QR L+K LE L   YD SVRD+ G IVQF YG+DG+D   +  +
Sbjct: 871  EGLVDTAVKTAETGYMQRRLMKALEDLVCHYDLSVRDSGGGIVQFRYGDDGLDPPNIEGS 930

Query: 1045 SFISKFD-------ALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQ-LDASN 1096
                +F        AL   E      RN++         +  N++     CS + + A  
Sbjct: 931  ELPVEFSRNLMHSRALIPIENDPFLSRNQW----QKIIQVETNKKEFKTICSSEFIRALV 986

Query: 1097 AYI-MELPDALKD----NAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLAS 1151
            A++  EL D  K     + +K+A K          F+   K K++ ++ QPG  VG + +
Sbjct: 987  AFLERELGDVAKPVHGRDTDKYAIKNGVTATQLYHFINTCKTKYIRAVVQPGTAVGAVGA 1046

Query: 1152 QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+I   L
Sbjct: 1047 QSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKTISTPIIDAKL 1097



 Score = 48.9 bits (115), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TCG+    C GHFG I LV+PV++   F L+ T+L+ IC  C
Sbjct: 69  CETCGETMQDCVGHFGIIRLVLPVFHIGYFKLMITVLQNICKSC 112


>gi|281360912|ref|NP_001096987.2| CG17209 [Drosophila melanogaster]
 gi|272506113|gb|ABW09418.2| CG17209 [Drosophila melanogaster]
          Length = 1383

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 361/1239 (29%), Positives = 548/1239 (44%), Gaps = 260/1239 (20%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C+TCGQ    C GHFG++DL +PV++   F     +L+ IC  C H              
Sbjct: 67   CETCGQGLNECIGHFGYLDLALPVFHIGHFRSTINILQMICKVCAH-------------- 112

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
              +++K                   PED  +  K    +  P  +Y   + L  Q     
Sbjct: 113  --VMLK-------------------PEDRQLYEKK---LHNPNFSYLGKKALHVQ----- 143

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGE 180
              A+AK         + TKC +C + N  + K   G + +   P+   + + +   N+ E
Sbjct: 144  MLAKAK---------KVTKCPHCGSPNGGVKKGP-GLLKILHDPYKGRKMDSLFTSNMNE 193

Query: 181  TFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSG 240
                 +  +DL              N T  G   TA                        
Sbjct: 194  MLRSTQTNRDL--------------NSTL-GNYSTAEE---------------------- 216

Query: 241  PLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS-- 298
             L P  V D+ E++ + +  L    S          A      +  V VPP   R PS  
Sbjct: 217  -LTPLMVLDLFEQIPQRDVALLGMCS--------HDAHPKHLIVTRVFVPPACIR-PSVL 266

Query: 299  ---KGG----DSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVL 351
               K G    D  M+  + +L++ V+Q ++             ++I   W  LQ  V + 
Sbjct: 267  SEVKAGTTEDDLTMKQSEILLINDVIQRHMATGG-------KIELIHEDWDFLQLHVALY 319

Query: 352  FDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEI 406
            F  + +    +MA      GI Q L+ K+G FR  L GKRV+++ R+VISPDP L +N++
Sbjct: 320  FHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQV 379

Query: 407  GIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISI 466
            G+P   A  LTYPERV P N+  +R+ + NG  +HPGA +   + S+       K  ++ 
Sbjct: 380  GVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSSF------KKYLAY 433

Query: 467  GRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKG 526
            G     +R  + Q  K  D      +V RHL+DGD+VL NRQP+LHK SIM H  +V + 
Sbjct: 434  G-----NREKVAQELKCGD------VVERHLRDGDIVLFNRQPSLHKMSIMCHRAKV-QP 481

Query: 527  EKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLI 586
            ++T R +   C+ YNADFDGDEMN+H PQ E +RAEA  ++   +  V P NG+ L +  
Sbjct: 482  QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAAT 541

Query: 587  QDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLL 646
            QD I    LLT+K+ FL ++E  QL             F       + I       LP  
Sbjct: 542  QDFITGGYLLTQKEVFLTKEEAMQLA----------ACFLANEDSTMHIK------LPP- 584

Query: 647  PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDK 706
            PA+ KP  LWTGKQ+ + ++                  P D  + R N   +      +K
Sbjct: 585  PALLKPRRLWTGKQMFSLLMR-----------------PNDDSQVRLNMVNKGRNYTRNK 627

Query: 707  GKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
               S  + +H                                     I  ++L+ GV+DK
Sbjct: 628  DLCSNDSWIH-------------------------------------IRNSELMCGVMDK 650

Query: 767  AQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL----ILKD 819
            A         + + +   +G + A   +  L+R+ + FLQ  GF+ G+ D+     +L+ 
Sbjct: 651  ATMGSGTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQNRGFSFGISDVTPSKKLLQH 710

Query: 820  KERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKM 879
            KE    N      E  + +    L+ + G   +       +E  M            ++ 
Sbjct: 711  KELLLNNGYAKCNEYIELLKAGTLQCQPGCTPE-----ETLESVM------------LRE 753

Query: 880  TSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGK 939
             S + +  + +   EL       PT  N   +M  SG+KGS +N  Q+ + +GQQ + GK
Sbjct: 754  LSAIREQAAKTCFAEL------HPT--NSALIMALSGSKGSNINISQMIACVGQQAISGK 805

Query: 940  RVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSR 999
            RVP     + LP F      P A GF+ + F +GL P E++FH MAGREGLVDTAVKT+ 
Sbjct: 806  RVPNGFENRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAE 865

Query: 1000 SGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV-------HQTSFISKFDA 1052
            +GYLQR L+K LE L + YD +VR+A   +V   YG DG+D             + ++D 
Sbjct: 866  TGYLQRRLVKCLEDLVVHYDGTVRNAVNEMVDTIYGGDGLDPVSMETRNKPVDLVHQYDN 925

Query: 1053 LAARERGRGRGRNKFCDKGSHTF-VMGRNQEMIYKKCSGQLDASNAY--IMELPDALKDN 1109
            L A +  +G+ R    ++ S     + R  E    +   +LD  N    + +    L+  
Sbjct: 926  LRA-QHPQGKDRPLNAEEMSEALETLLRTPEFAEARDDFKLDVRNHINTVSKRIGQLQKR 984

Query: 1110 AEKFAD-----KFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLN 1164
             EK  D     + L+ E   Q F++ +  ++  ++ +PG  VG +A+QS+GEP TQMTL 
Sbjct: 985  YEKCIDLCHQIECLTTEQLLQ-FVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLK 1043

Query: 1165 TFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            TFH AG   MN+T G+PR+ EI+  A+K I TP+IT  L
Sbjct: 1044 TFHFAGVASMNITQGVPRIVEIIN-ATKTISTPIITAEL 1081


>gi|316997005|dbj|BAJ52630.1| RNA polymerase I largest subunit [Paramecium tetraurelia]
          Length = 1029

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 269/704 (38%), Positives = 379/704 (53%), Gaps = 128/704 (18%)

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+HF Q  + RAE YNI   + QY+  +NG PLR L+QD IVS+  LT +DTFL + ++ 
Sbjct: 1    NLHFIQSMIGRAEGYNIALNDYQYISQTNGKPLRELMQDMIVSSVFLTLRDTFLTKQQYM 60

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
            QL+Y++  S               L  ++ Q++  L PAI KP+ LWTGKQ+I+ ++  I
Sbjct: 61   QLIYTAIWS---------------LFEKNSQKIELLQPAILKPKQLWTGKQLISNIIK-I 104

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
              G   +  + G  L                     K KLS             KE+   
Sbjct: 105  IVGLNGYDPDIGLNLE-------------------SKCKLS------------SKEL--- 130

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNT 786
             PG   +  +   K+ EL            + G++DK Q    ADYG++H   ELYG   
Sbjct: 131  -PGMASDDIQVLIKDNEL------------LLGIVDKNQVGSGADYGMMHAFHELYGPKM 177

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLI--LKDKERE-------RKNHLHGSEEIGKR 837
             G LL+  +RLF  +LQ HGFTCG+DDL++  L D++R        +K     +E  G  
Sbjct: 178  TGQLLTGFARLFAAYLQYHGFTCGMDDLIVDELHDEKRRVLIEENLKKGVRQAAEYCGYN 237

Query: 838  VHL-EALEL--------EDGAEIDP--------IKLKSEIEKAMRGGGDAAVAYFDMKMT 880
              + E++ L        E+G    P        ++   +I +A+R      +     +  
Sbjct: 238  SQIPESINLFNRSNFVFENGQYNHPKYLQDVHYLQYDHQIYEALR--QKILIEKHQEEAL 295

Query: 881  SQLNKHTSSSVINELLSE---GLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELE 937
             Q  K   + V +E++     GL K    N  S+MT +GAKGS VN  Q+S+ LGQQELE
Sbjct: 296  DQEYKKAMTKVTSEIVGSTLGGLQKLFPLNLFSMMTMTGAKGSNVNHSQVSALLGQQELE 355

Query: 938  GKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKT 997
            G+RVP M +G++LPSF P+D  PRAGG++ DRFLTGLRPQ ++FHCMAGREGL+DTAVKT
Sbjct: 356  GRRVPLMPTGRSLPSFLPYDPNPRAGGYVADRFLTGLRPQGFFFHCMAGREGLIDTAVKT 415

Query: 998  SRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARE 1057
            SRSGYLQRCLIK+LE L + YD +VRD DGS++Q   GEDG+D  +T ++ KF  LA   
Sbjct: 416  SRSGYLQRCLIKHLEGLIVQYDLTVRDNDGSLIQLFCGEDGIDTTKTKYLEKFSFLAQNN 475

Query: 1058 RGRGRGRNKFCDKGSHTFVMGRNQEMI--YKKCSGQ---------LDASN------AYIM 1100
            +              H   + R QEM   +K   G          ++A N      A  M
Sbjct: 476  Q--------------HYKQLYRVQEMKQHFKTLDGASVELENDTLMNAFNPSQNLGAVSM 521

Query: 1101 ELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQ 1160
            ++   + +  +K  ++    +++ + F  L   +++ +L  PG+ VG +A+QS+GEPSTQ
Sbjct: 522  KVQSTMNEYLQKCQNELQQKKISNKQFKSLANIRYLRALMHPGDAVGCVAAQSIGEPSTQ 581

Query: 1161 MTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            MTLNTFHLAG GE NVTLGIPRL+EIL  A+K  KTP ++   L
Sbjct: 582  MTLNTFHLAGHGEKNVTLGIPRLREILMTATKKQKTPTMSLQFL 625


>gi|403416877|emb|CCM03577.1| predicted protein [Fibroporia radiculosa]
          Length = 1403

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 309/1000 (30%), Positives = 487/1000 (48%), Gaps = 173/1000 (17%)

Query: 265  ISDMQQQGFGKKAGHSI---FFLGVVLVPPIKFRLPSKGGDSVM-EHPQTVLLSKVLQAN 320
            ISD   +  G +  H     +    + VPP+  R PS   D    E   TV L++++  N
Sbjct: 226  ISDEDCELLGLRPAHGRPEEYVWQYISVPPVCIR-PSVAQDGASNEDDLTVKLTEIVFTN 284

Query: 321  IYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGK-----NAAGQRDMASGICQLLEKKE 375
              +          A+  + +W  LQ SV +  + +     +  GQ+ +  G CQ L+ K+
Sbjct: 285  ALIKQGLAKGAPTAQ-FMEQWDFLQLSVAMYINSELPGVPSQMGQKPI-RGFCQRLKGKQ 342

Query: 376  GLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSII 435
            G FR  L GKRV+++ R+VISPDP L ++E+ +P   +  LTYPERVT  N+  L+ ++ 
Sbjct: 343  GRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPERVSKILTYPERVTAHNIDMLKKAVR 402

Query: 436  NGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYR 495
            NG ++HPGA +Y+   S        K  +  G     +R AI      +D    G +V R
Sbjct: 403  NGCDVHPGA-NYVTAGSN-----GFKKYLKFG-----NRNAI------ADGLRIGDVVER 445

Query: 496  HLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQ 555
            H+ DGDVVL NRQP+LHK SIM H V+V +  ++ R++   C  YNADFDGDEMN+H PQ
Sbjct: 446  HIIDGDVVLFNRQPSLHKLSIMCHRVKV-RPWRSFRLNECVCGPYNADFDGDEMNLHVPQ 504

Query: 556  DEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSS 615
             E +R EA  +++  +  V P NG+P+ + IQD I ++ LL+++DTF +R +F Q+    
Sbjct: 505  TEEARTEALELMSVKHNLVTPRNGEPVIAAIQDFITASFLLSRRDTFFDRRQFTQIC--- 561

Query: 616  GVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPP 675
                    S+ G    ++       ++ P  P IWKP  LWTGKQ+   ++      RP 
Sbjct: 562  --------SYFGDANMQI-------DIPP--PTIWKPVRLWTGKQIFNVLM------RP- 597

Query: 676  FVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEK 735
                                +K S+   N + K +K                + KP  + 
Sbjct: 598  --------------------NKSSNVMVNVESKCNK----------------QEKPDPKC 621

Query: 736  EAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLS 792
                N + +   ++  L+I  ++++ GV+DKA         +   +   YG + A   ++
Sbjct: 622  YPRMNAAPDLSPNDGWLVIVNSEIMCGVMDKATVGSGKKKSVFGIIMRDYGPHEAAAAMN 681

Query: 793  ALSRLFTVFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
             L++L   +L  +GF+ G++D++    +  +K++  +      +++  R     LE + G
Sbjct: 682  RLAKLCARYLANYGFSLGINDVIPGPKLANEKDKLVETAYAECQDLIMRAKKGLLENKPG 741

Query: 849  AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNW 908
             +      + +  +AM  G           + S++        + EL        +  N 
Sbjct: 742  CD------QEQTLEAMISG-----------VLSKVRDKVGEICLKEL--------SRHNA 776

Query: 909  ISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIID 968
              +M T G+KGS +N  Q+ + +GQQ + G RVP     ++LP F      P + GF+ +
Sbjct: 777  PLIMATCGSKGSVINVAQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSREPPSKGFVRN 836

Query: 969  RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGS 1028
             F TGL P E+ FH ++GREGLVDTAVKT+ +GY+QR L+K LE L   YD SVR+A G 
Sbjct: 837  SFYTGLSPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAVGG 896

Query: 1029 IVQFCYGEDGV-------DVHQTSFISKFDALAARERGRGRG---------------RNK 1066
            +VQF YG+DG+       D     ++  +   ++ E  R RG               R K
Sbjct: 897  VVQFRYGDDGLDPACLEGDAQPVEYLRAWSHASSIESRRARGLLPFEIMEIVDRELLRRK 956

Query: 1067 F---CDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLS---- 1119
            F   C       + G   E + ++ +    +   +     +AL+ + E  AD  LS    
Sbjct: 957  FTSECTAAYLATIRGFVSEHVAQRLAEIRKSHGMF-----EALERDGEWDADTDLSLGAS 1011

Query: 1120 -------------NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTF 1166
                          E+    FL++   K+V +  +PG  VG + +QS+GEP TQMTL TF
Sbjct: 1012 AANKAVVDNKLKVTEVQLLRFLEICWTKYVKAKIEPGSTVGAVGAQSIGEPGTQMTLKTF 1071

Query: 1167 HLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVG 1206
            H AG   MNVTLG+PR++EI+  A+K I TP+I+C L+  
Sbjct: 1072 HFAGVASMNVTLGVPRIKEIIN-AAKSISTPIISCKLVTA 1110


>gi|224003141|ref|XP_002291242.1| DNA directed RNA polymerase III, largest subunit [Thalassiosira
            pseudonana CCMP1335]
 gi|220973018|gb|EED91349.1| DNA directed RNA polymerase III, largest subunit [Thalassiosira
            pseudonana CCMP1335]
          Length = 1422

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 306/953 (32%), Positives = 460/953 (48%), Gaps = 152/953 (15%)

Query: 287  VLVPPIKFRLPSKG---GDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMN 343
            +LVPP+  R PS     G    E   TV L +V+  N+ L       P   K I+  W  
Sbjct: 278  ILVPPVPIR-PSVAMDVGGGSNEDDLTVKLLEVINVNVALELNMTRNP-QTKTIMEGWDV 335

Query: 344  LQQSVNVLFDGKNAAGQRDMA----SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDP 399
            LQ  V    +G     +++M      G+CQ L+ K+G FR  L GKRV+++ R+VISPDP
Sbjct: 336  LQSQVAQYINGDMPGLKKEMGHKPIRGLCQRLKGKQGRFRGNLSGKRVDFSARTVISPDP 395

Query: 400  YLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPN 459
             L V+++G+P + A  +TYPE V+ +N+ KLR  ++NG ++HPGA         +  P  
Sbjct: 396  NLRVDQVGVPVHVAKIMTYPETVSRYNIEKLRQRVLNGPDVHPGA--------NLIRPGG 447

Query: 460  KKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAH 519
            +   +      D  R A             G +V RH++DGDVVL NRQP+LHK SIM+H
Sbjct: 448  ENSFVKSLAYADRERAA--------QTLRIGDIVERHMEDGDVVLFNRQPSLHKLSIMSH 499

Query: 520  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNG 579
             V+V+   +T R +   C+ YNADFDGDEMN+H PQ E +R EA  ++  ++    P NG
Sbjct: 500  QVKVMPW-RTFRFNICVCAPYNADFDGDEMNMHLPQTEEARIEANMLMGVHHNLATPRNG 558

Query: 580  DPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSE 639
            +PL +  QD + +A L+T++D F +R+ FC L     VS  GL               +E
Sbjct: 559  EPLVACSQDFLSAAYLITQRDQFFSREMFCSL-----VSYFGL---------------AE 598

Query: 640  QEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQS 699
            +++   LPAI KP PLWTGKQV T ++                             +KQ+
Sbjct: 599  EQIDVPLPAILKPVPLWTGKQVFTCIV---------------------------KPNKQT 631

Query: 700  DRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-D 758
                N + K                         EK  + NK  +     +  + ++N +
Sbjct: 632  TALVNFEMK-------------------------EKNYDTNKKLKHFCPNDGWVAFRNSE 666

Query: 759  LVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH-GFTCGVDDL 814
            L+ G I K    D    GL++ +    GS  A   +   S+L + +  MH GF+ G+ D+
Sbjct: 667  LISGNIAKKTIGDGSKTGLLYVLLRDCGSAEAARFMDRFSKLCSRYFGMHRGFSIGISDV 726

Query: 815  LILKDKERERKNHLHG----SEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
                  ++ + + L      +EE  K+     LEL  G +     L   +E+ + G    
Sbjct: 727  SPSAKLKKMKYDILSTGYKKAEEAIKKYDEGTLELRPGCD-----LLQSLEEILNG---- 777

Query: 871  AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
                    +  +L +      +  L           N   +M   G+KGS +N  Q+ + 
Sbjct: 778  --------ILGKLREAAGQEAMKAL--------PWSNTPRIMAECGSKGSPLNISQMMAC 821

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            +GQQ + G R+      +TLP F      P A GF+ + F +GL   E+ FH M GREGL
Sbjct: 822  VGQQAVGGMRIQDGFVNRTLPHFTYHSLTPPAKGFVANSFYSGLTATEFIFHTMGGREGL 881

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD---VHQTSFI 1047
            VDTAVKT+ +GY+ R L+K LE L + YD SVR+++ ++VQF YG+D ++   +      
Sbjct: 882  VDTAVKTAETGYMARRLMKALEDLSLRYDNSVRNSENTVVQFTYGDDSLNPEKMENNDRP 941

Query: 1048 SKFDALAARERG-------RGRGRNKFCDKGSHTFVMGRNQEMIY--KKCSGQLDASNAY 1098
             +FD L                 + +  +K  H     R Q ++   KK   ++ +    
Sbjct: 942  VEFDRLHLHISQIFPCVDEPNLLKEQLQEKIEHCISEERFQCLLPKGKKFLAEIISFFEG 1001

Query: 1099 IMELPDALK---DNAEKFADKFLSN----EMAKQDFLKLVKHKFVLSLAQPGEPVGLLAS 1151
            I+EL D +     N E    +  ++    E    +FLK    K+  ++ +PGE VG + +
Sbjct: 1002 IVELQDTIIGTCTNVEHIKQRIWNSCRFTETQVNEFLKTALSKYTKAMVEPGEAVGAIGA 1061

Query: 1152 QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            QS+ EP TQMTL TFH AG   MNVTLG+PRL+EI+  ASK+I TP+IT  L+
Sbjct: 1062 QSISEPGTQMTLKTFHFAGVSSMNVTLGVPRLKEIIN-ASKNISTPIITAKLV 1113


>gi|133316|sp|P16355.1|RPA1_TRYBB RecName: Full=DNA-directed RNA polymerase I subunit RPA1;
            Short=TbRPA1; AltName: Full=DNA-directed RNA polymerase I
            largest subunit
 gi|10522|emb|CAA32572.1| unnamed protein product [Trypanosoma brucei]
          Length = 1744

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 273/802 (34%), Positives = 415/802 (51%), Gaps = 131/802 (16%)

Query: 279  HSIFFLGVVLVPPIKFRLPS--KGGDS--VMEHPQTVLLSKVL------------QANIY 322
            + +FFL  +LVPP+  RL S  +  D+  ++   QT  LS +L             AN  
Sbjct: 333  YKLFFLDRILVPPLPLRLSSGVRVNDNGLIIPDEQTRALSDILGFVEQIECFHTLSANST 392

Query: 323  LANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKL 382
               +++     A V  +   NLQQ V+  +            + I     KKEGLFR  +
Sbjct: 393  NGRSFITDAQRA-VNESNLRNLQQKVDEFY------------AEIVNSFAKKEGLFRMNM 439

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVT---PWNVVKLRDSIINGAE 439
            MGKRVN ACRSVISPDP++  NE+ +P   A  L++PE+VT   P  +  L+  ++NG  
Sbjct: 440  MGKRVNQACRSVISPDPFVEPNEVLLPRPLARALSFPEQVTCFAPARMNLLKHCVVNGPR 499

Query: 440  IHPGATHYLDKLSTMRL------PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMV 493
             +PGATH   + +   +       P +  R    R    ++  +              +V
Sbjct: 500  KYPGATHIELRHANGEIRSVDLNVPEQTRRQHAARFFAMAQSGVTL------------IV 547

Query: 494  YRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHF 553
            YRH+ +GD V+ NRQPTLHKPS+M + V+VL G KT+R HY N +++NADFDGDEMNVH 
Sbjct: 548  YRHILNGDRVIFNRQPTLHKPSMMGYRVKVLSGSKTIRFHYVNGNSFNADFDGDEMNVHV 607

Query: 554  PQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLY 613
            PQ   +RAE   +++AN  Y+ P++G P+R LIQDH+ +  L+T +D F +   F QL+Y
Sbjct: 608  PQSIETRAEVETLMDANINYLVPTSGRPIRGLIQDHVAAGVLVTLRDKFFDHSTFVQLVY 667

Query: 614  SSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGR 673
                  +G+G +  +      +  +  E++P +PAI  P P+WTGKQ+I+ ++       
Sbjct: 668  ------NGVGPYIQEN-----VGITLAELIP-IPAILMPRPMWTGKQLISVMVR------ 709

Query: 674  PPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGE 733
                           F +  +A     R+      L  T+++       +    +  P  
Sbjct: 710  ---------------FSSGLSAASDCGREIEGGITLKGTSQI-------QPSAFDRIPAG 747

Query: 734  EKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLL 791
              +A + KS    + +  ++   ++L+ G + K Q   ++    H V ELYG +  G L 
Sbjct: 748  SCDAVRAKS--GAVVDSTVMFANSELITGFMCKKQLGASNMSAPHHVYELYGPHRTGQLF 805

Query: 792  SALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEI 851
            +A  R+  + L+  G +  +DD+ ++ D+ER R + L                     ++
Sbjct: 806  AAFGRVLLLALRKEGLSLAMDDMFLV-DEER-RCDLLR--------------------KL 843

Query: 852  DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
            D I L    E+A      AA    D           ++ +  E + + +L P  KN + L
Sbjct: 844  DDIALDVPDEEAT-----AAPMIADY----------ATKIQQEFVPQRMLVPFPKNHLLL 888

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            MT SGAKGS +N  Q+S  LGQQ  +G RV RM S KTLPSF   +   R+ GF +  F 
Sbjct: 889  MTISGAKGSNLNATQMSLQLGQQLFDGLRVKRMNSSKTLPSFFTNEKRARSFGFAMGSFA 948

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            +G+RP EY  H MAGR+GL+DTAVKTSRSG+LQRCLIK LE L + +D +VRD++GS++Q
Sbjct: 949  SGIRPAEYTIHAMAGRDGLIDTAVKTSRSGHLQRCLIKGLESLVVHWDRTVRDSNGSVIQ 1008

Query: 1032 FCYGEDGVDVHQTSFISKFDAL 1053
            F YG DG+D  + S ++ ++ +
Sbjct: 1009 FMYGGDGLDPCKASTLTAWEMM 1030



 Score = 79.7 bits (195), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 6/99 (6%)

Query: 1101 ELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQ 1160
            +L + L+   +K+   F      ++    +   + + +L +PGEPVGLLA+Q+ GEPSTQ
Sbjct: 1124 QLKERLQQRRQKWVGAF------EKTLADITARRRLWALCEPGEPVGLLAAQAAGEPSTQ 1177

Query: 1161 MTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVI 1199
            MTLNTFH AG    +VT GIPRL+E+L  AS +    V+
Sbjct: 1178 MTLNTFHTAGSTVSHVTEGIPRLRELLIYASVNKAAVVV 1216


>gi|162219|gb|AAA30231.1| RNA polymerase I [Trypanosoma brucei]
          Length = 1781

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 273/802 (34%), Positives = 415/802 (51%), Gaps = 131/802 (16%)

Query: 279  HSIFFLGVVLVPPIKFRLPS--KGGDS--VMEHPQTVLLSKVL------------QANIY 322
            + +FFL  +LVPP+  RL S  +  D+  ++   QT  LS +L             AN  
Sbjct: 370  YKLFFLDRILVPPLPLRLSSGVRVNDNGLIIPDEQTRALSDILGFVEQIECFHTLSANST 429

Query: 323  LANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKL 382
               +++     A V  +   NLQQ V+  +            + I     KKEGLFR  +
Sbjct: 430  NGRSFITDAQRA-VNESNLRNLQQKVDEFY------------AEIVNSFAKKEGLFRMNM 476

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVT---PWNVVKLRDSIINGAE 439
            MGKRVN ACRSVISPDP++  NE+ +P   A  L++PE+VT   P  +  L+  ++NG  
Sbjct: 477  MGKRVNQACRSVISPDPFVEPNEVLLPRPLARALSFPEQVTCFAPARMNLLKHCVVNGPR 536

Query: 440  IHPGATHYLDKLSTMRL------PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMV 493
             +PGATH   + +   +       P +  R    R    ++  +              +V
Sbjct: 537  KYPGATHIELRHANGEIRSVDLNVPEQTRRQHAARFFAMAQSGVTL------------IV 584

Query: 494  YRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHF 553
            YRH+ +GD V+ NRQPTLHKPS+M + V+VL G KT+R HY N +++NADFDGDEMNVH 
Sbjct: 585  YRHILNGDRVIFNRQPTLHKPSMMGYRVKVLSGSKTIRFHYVNGNSFNADFDGDEMNVHV 644

Query: 554  PQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLY 613
            PQ   +RAE   +++AN  Y+ P++G P+R LIQDH+ +  L+T +D F +   F QL+Y
Sbjct: 645  PQSIETRAEVETLMDANINYLVPTSGRPIRGLIQDHVAAGVLVTLRDKFFDHSTFVQLVY 704

Query: 614  SSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGR 673
                  +G+G +  +      +  +  E++P +PAI  P P+WTGKQ+I+ ++       
Sbjct: 705  ------NGVGPYIQEN-----VGITLAELIP-IPAILMPRPMWTGKQLISVMVR------ 746

Query: 674  PPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGE 733
                           F +  +A     R+      L  T+++       +    +  P  
Sbjct: 747  ---------------FSSGLSAASDCGREIEGGITLKGTSQI-------QPSAFDRIPAG 784

Query: 734  EKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLL 791
              +A + KS    + +  ++   ++L+ G + K Q   ++    H V ELYG +  G L 
Sbjct: 785  SCDAVRAKS--GAVVDSTVMFANSELITGFMCKKQLGASNMSAPHHVYELYGPHRTGQLF 842

Query: 792  SALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEI 851
            +A  R+  + L+  G +  +DD+ ++ D+ER R + L                     ++
Sbjct: 843  AAFGRVLLLALRKEGLSLAMDDMFLV-DEER-RCDLLR--------------------KL 880

Query: 852  DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
            D I L    E+A      AA    D           ++ +  E + + +L P  KN + L
Sbjct: 881  DDIALDVPDEEAT-----AAPMIADY----------ATKIQQEFVPQRMLVPFPKNHLLL 925

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            MT SGAKGS +N  Q+S  LGQQ  +G RV RM S KTLPSF   +   R+ GF +  F 
Sbjct: 926  MTISGAKGSNLNATQMSLQLGQQLFDGLRVKRMNSSKTLPSFFTNEKRARSFGFAMGSFA 985

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            +G+RP EY  H MAGR+GL+DTAVKTSRSG+LQRCLIK LE L + +D +VRD++GS++Q
Sbjct: 986  SGIRPAEYTIHAMAGRDGLIDTAVKTSRSGHLQRCLIKGLESLVVHWDRTVRDSNGSVIQ 1045

Query: 1032 FCYGEDGVDVHQTSFISKFDAL 1053
            F YG DG+D  + S ++ ++ +
Sbjct: 1046 FMYGGDGLDPCKASTLTAWEMM 1067



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 6/99 (6%)

Query: 1101 ELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQ 1160
            +L + L+   +K+   F      ++    +   + + +L +PGEPVGLLA+Q+ GEPSTQ
Sbjct: 1161 QLKERLQQRRQKWVGAF------EKTLADITARRRLWALCEPGEPVGLLAAQAAGEPSTQ 1214

Query: 1161 MTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVI 1199
            MTLNTFH AG    +VT GIPRL+E+L  AS +    V+
Sbjct: 1215 MTLNTFHTAGSTVSHVTEGIPRLRELLIYASVNKAAVVV 1253


>gi|261330566|emb|CBH13550.1| DNA-directed rna polymerase I largest subunit,putative [Trypanosoma
            brucei gambiense DAL972]
          Length = 1781

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 274/802 (34%), Positives = 414/802 (51%), Gaps = 131/802 (16%)

Query: 279  HSIFFLGVVLVPPIKFRLPS--KGGDS--VMEHPQTVLLSKVL------------QANIY 322
            + +FFL  VLVPP+  RL S  +  D+  ++   QT  LS +L             AN  
Sbjct: 370  YKLFFLDRVLVPPLPLRLSSGVRVNDNGLIIPDEQTRALSDILGFVEQIECFHTLSANST 429

Query: 323  LANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKL 382
               +++     A V  +   NLQQ V+  +            + I     KKEGLFR  +
Sbjct: 430  NGRSFITDAQRA-VNESNLRNLQQKVDEFY------------AEIVNSFAKKEGLFRMNM 476

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVT---PWNVVKLRDSIINGAE 439
            MGKRVN ACRSVISPDP++  NE+ +P   A  L++PE+VT   P  +  L+  ++NG  
Sbjct: 477  MGKRVNQACRSVISPDPFVEPNEVLLPRPLARALSFPEQVTCFAPARMNLLKHCVVNGPR 536

Query: 440  IHPGATHYLDKLSTMRL------PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMV 493
             +PGATH   + +   +       P +  R    R    ++  +              +V
Sbjct: 537  KYPGATHIELRHANGEIRSVDLNVPEQTRRQHAARFFAMAQSGVTL------------IV 584

Query: 494  YRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHF 553
            YRH+ +GD V+ NRQPTLHKPS+M + V+VL G KT+R HY N +++NADFDGDEMNVH 
Sbjct: 585  YRHILNGDRVIFNRQPTLHKPSMMGYRVKVLSGSKTIRFHYVNGNSFNADFDGDEMNVHV 644

Query: 554  PQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLY 613
            PQ   +RAE   +++AN  Y+ P++G P+R LIQDH+ +  L+T +D F +   F QL+Y
Sbjct: 645  PQSIETRAEVETLMDANINYLVPTSGRPIRGLIQDHVAAGVLVTLRDKFFDHSTFVQLVY 704

Query: 614  SSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGR 673
                  +G+G +  +      +  +  E++P +PAI  P P+WTGKQ+I+ ++       
Sbjct: 705  ------NGVGPYIQEN-----VGITLAELIP-IPAILMPRPMWTGKQLISVMVR------ 746

Query: 674  PPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGE 733
                           F +  +A     R+      L  T+++       +    +  P  
Sbjct: 747  ---------------FSSGLSAASDCGREIEGGITLKGTSQI-------QPSAFDRIPAG 784

Query: 734  EKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLL 791
              +A + KS    + +  ++   ++L+ G + K Q   ++    H V ELYG +  G L 
Sbjct: 785  SCDAVRAKS--GAVVDSTVMFANSELITGFMCKKQLGASNMSAPHHVYELYGPHRTGQLF 842

Query: 792  SALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEI 851
            +A  R+  + L+  G +  +DD+ ++ D+ER R + L                     ++
Sbjct: 843  AAFGRVLLLALRKEGLSLAMDDMFLV-DEER-RCDLLR--------------------KL 880

Query: 852  DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
            D I L    E+A      AA    D           ++ +  E +   +L P  KN + L
Sbjct: 881  DDIALDVPDEEAT-----AAPMIADY----------ATKIQQEFVPHRMLVPFPKNHLLL 925

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            MT SGAKGS +N  Q+S  LGQQ  +G RV RM S KTLPSF   +   R+ GF +  F 
Sbjct: 926  MTISGAKGSNLNATQMSLQLGQQLFDGLRVKRMNSSKTLPSFFTNEKRARSFGFAMGSFA 985

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            +G+RP EY  H MAGR+GL+DTAVKTSRSG+LQRCLIK LE L + +D +VRD++GS++Q
Sbjct: 986  SGIRPAEYTIHAMAGRDGLIDTAVKTSRSGHLQRCLIKGLESLVVHWDRTVRDSNGSVIQ 1045

Query: 1032 FCYGEDGVDVHQTSFISKFDAL 1053
            F YG DG+D  + S ++ ++ +
Sbjct: 1046 FMYGGDGLDPCKASTLTAWEMM 1067



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 6/99 (6%)

Query: 1101 ELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQ 1160
            +L + L+   +K+   F      ++    +   + + +L +PGEPVGLLA+Q+ GEPSTQ
Sbjct: 1161 QLKERLQRRRQKWVGAF------EKTLADITARRRLWALCEPGEPVGLLAAQAAGEPSTQ 1214

Query: 1161 MTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVI 1199
            MTLNTFH AG    +VT GIPRL+E+L  AS +    V+
Sbjct: 1215 MTLNTFHTAGSTVSHVTEGIPRLRELLIYASVNKAAVVV 1253


>gi|72393077|ref|XP_847339.1| DNA-directed RNA polymerase I largest subunit [Trypanosoma brucei
            TREU927]
 gi|62176646|gb|AAX70750.1| DNA-directed RNA polymerase I largest subunit [Trypanosoma brucei]
 gi|70803369|gb|AAZ13273.1| DNA-directed RNA polymerase I largest subunit [Trypanosoma brucei
            brucei strain 927/4 GUTat10.1]
          Length = 1781

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 273/802 (34%), Positives = 415/802 (51%), Gaps = 131/802 (16%)

Query: 279  HSIFFLGVVLVPPIKFRLPS--KGGDS--VMEHPQTVLLSKVL------------QANIY 322
            + +FFL  +LVPP+  RL S  +  D+  ++   QT  LS +L             AN  
Sbjct: 370  YKLFFLDRILVPPLPLRLSSGVRVNDNGLIIPDEQTRALSDILGFVEQIECFHTLSANST 429

Query: 323  LANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKL 382
               +++     A V  +   NLQQ V+  +            + I     KKEGLFR  +
Sbjct: 430  NGRSFITDAQRA-VNESNLRNLQQKVDEFY------------AEIINSFAKKEGLFRMNM 476

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVT---PWNVVKLRDSIINGAE 439
            MGKRVN ACRSVISPDP++  NE+ +P   A  L++PE+VT   P  +  L+  ++NG  
Sbjct: 477  MGKRVNQACRSVISPDPFVEPNEVLLPRPLARALSFPEQVTCFAPARMNLLKHCVVNGPR 536

Query: 440  IHPGATHYLDKLSTMRL------PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMV 493
             +PGATH   + +   +       P +  R    R    ++  +              +V
Sbjct: 537  KYPGATHIELRHANGEIRSVDLNVPEQTRRQHAARFFAMAQSGVTL------------IV 584

Query: 494  YRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHF 553
            YRH+ +GD V+ NRQPTLHKPS+M + V+VL G KT+R HY N +++NADFDGDEMNVH 
Sbjct: 585  YRHILNGDRVIFNRQPTLHKPSMMGYRVKVLSGSKTIRFHYVNGNSFNADFDGDEMNVHV 644

Query: 554  PQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLY 613
            PQ   +RAE   +++AN  Y+ P++G P+R LIQDH+ +  L+T +D F +   F QL+Y
Sbjct: 645  PQSIETRAEVETLMDANINYLVPTSGRPIRGLIQDHVAAGVLVTLRDKFFDHSTFVQLVY 704

Query: 614  SSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGR 673
                  +G+G +  +      +  +  E++P +PAI  P P+WTGKQ+I+ ++       
Sbjct: 705  ------NGVGPYIQEN-----VGITLAELIP-IPAILMPRPMWTGKQLISVMVR------ 746

Query: 674  PPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGE 733
                           F +  +A     R+      L  T+++       +    +  P  
Sbjct: 747  ---------------FSSGLSAASDCGREIEGGITLKGTSQI-------QPSAFDRIPAG 784

Query: 734  EKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLL 791
              +A + KS    + +  ++   ++L+ G + K Q   ++    H V ELYG +  G L 
Sbjct: 785  SCDAVRVKS--GAVVDSTVMFANSELITGFMCKKQLGASNMSAPHHVYELYGPHRTGQLF 842

Query: 792  SALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEI 851
            +A  R+  + L+  G +  +DD+ ++ D+ER R + L                     ++
Sbjct: 843  AAFGRVLLLALRKEGLSLAMDDMFLV-DEER-RCDLLR--------------------KL 880

Query: 852  DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
            D I L    E+A      AA    D           ++ +  E + + +L P  KN + L
Sbjct: 881  DDIALDVPDEEAT-----AAPMIADY----------ATKIQQEFVPQRMLVPFPKNHLLL 925

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            MT SGAKGS +N  Q+S  LGQQ  +G RV RM S KTLPSF   +   R+ GF +  F 
Sbjct: 926  MTISGAKGSNLNATQMSLQLGQQLFDGLRVKRMNSSKTLPSFFTNEKRARSFGFAMGSFA 985

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            +G+RP EY  H MAGR+GL+DTAVKTSRSG+LQRCLIK LE L + +D +VRD++GS++Q
Sbjct: 986  SGIRPAEYTIHAMAGRDGLIDTAVKTSRSGHLQRCLIKGLESLVVHWDRTVRDSNGSVIQ 1045

Query: 1032 FCYGEDGVDVHQTSFISKFDAL 1053
            F YG DG+D  + S ++ ++ +
Sbjct: 1046 FMYGGDGLDPCKASTLTAWEMM 1067



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 6/99 (6%)

Query: 1101 ELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQ 1160
            +L + L+   +K+   F      ++    +   + + +L +PGEPVGLLA+Q+ GEPSTQ
Sbjct: 1161 QLKERLQQRRQKWVGAF------EKTLADITARRRLWALCEPGEPVGLLAAQAAGEPSTQ 1214

Query: 1161 MTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVI 1199
            MTLNTFH AG    +VT GIPRL+E+L  AS +    V+
Sbjct: 1215 MTLNTFHTAGSTVSHVTEGIPRLRELLIYASVNKAAVVV 1253


>gi|295668637|ref|XP_002794867.1| DNA-directed RNA polymerase III subunit RPC1 [Paracoccidioides sp.
            'lutzii' Pb01]
 gi|226285560|gb|EEH41126.1| DNA-directed RNA polymerase III subunit RPC1 [Paracoccidioides sp.
            'lutzii' Pb01]
          Length = 1425

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 312/984 (31%), Positives = 475/984 (48%), Gaps = 185/984 (18%)

Query: 281  IFFLGVVLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
            +F    +  PP+  R PS G ++   E   T  L  ++Q+N+ L NA +N+    + I+ 
Sbjct: 234  VFLWQYIPAPPVCIR-PSVGQEAASTEDDLTAKLGDIIQSNMNLKNA-LNKGAPVQTIIE 291

Query: 340  RW--MNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
             W  M LQ +V +  D  G   A       G CQ L+ K+G FR  L GKRV+++ R+VI
Sbjct: 292  CWDHMQLQLAVYINSDVPGLQKADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSSRTVI 351

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMR 455
            SPDP L ++E+ +P   A+ +TYPE+VT +N  KLR  + NG +  PGA + L K     
Sbjct: 352  SPDPNLRIDEVAVPILVAMNMTYPEQVTRYNKDKLRQCVRNGTKTWPGANYVLKK----- 406

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
               N KM +  G            P   ++   EG +V RH++DGD+VL NRQP+LHK S
Sbjct: 407  -SQNFKMNLKFG-----------NPNLIANELEEGDIVERHIEDGDIVLFNRQPSLHKLS 454

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            I++H V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA  ++   N  V 
Sbjct: 455  ILSHFVKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLVT 513

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 635
            P NG+P+ S IQD I +A +L+ K+ F +R  F Q+             +   PG R   
Sbjct: 514  PKNGEPIISAIQDFITAAYMLSSKNVFYDRKTFTQVCL-----------YMLLPGTRF-- 560

Query: 636  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
                 ++ P  P+I KP+ LWTGKQV   ++                             
Sbjct: 561  -----DLPP--PSILKPQMLWTGKQVFNILM----------------------------- 584

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
                 R   D   L     ++ D + ++ +  +G P           ++ + ++  L I 
Sbjct: 585  -----RPNKDSPVL-----VNLDAACREFKAPKGTP-----------RDLDANDRWLCIR 623

Query: 756  KNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
             ++++ GV+DK          + + +   YG   A   ++ LSRL   ++   GF+ G+ 
Sbjct: 624  NSEVMCGVMDKYTIGSGKKDSVFYVMLRDYGPAIAAEGMNRLSRLCARWITDLGFSIGIT 683

Query: 813  DL-----LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGG 867
            D+     L+ + KE     ++   E I K    ++  LE     D    +  +E  + G 
Sbjct: 684  DVYPGDRLLEEKKELVEHAYVQCDEVIQK---FKSGNLEKAPGCDE---QMTMENIISG- 736

Query: 868  GDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQI 927
                       + S++ +      I+EL        +  N   +M TSG+KGS +N  Q+
Sbjct: 737  -----------ILSKVRQQAGDLCISEL--------SRWNTPLIMATSGSKGSNINVAQM 777

Query: 928  SSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGR 987
             + +GQQ + G+RV      +TLP F      P A GF+ + F +GL P E+ FH ++GR
Sbjct: 778  VALVGQQIIGGQRVQDGFQDRTLPHFPKHARQPPAKGFVQNSFFSGLSPTEFLFHAISGR 837

Query: 988  EGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD------- 1040
            EGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++  SIVQF YG+D +D       
Sbjct: 838  EGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDGTVRNSSSSIVQFQYGDDKLDPVDMEGN 897

Query: 1041 --------VHQTSFISKFD----------------ALAARERGRGRGRNKFCDKGSHTFV 1076
                        S ++ FD                +L A+ER R    N++   G+    
Sbjct: 898  ARPVNFDRTFTHSEVTTFDNSDKGLLPDEIMTLCQSLLAKERAR---LNRYDLMGNRLDY 954

Query: 1077 MGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKF----------ADKFLSNEMAK-- 1124
            M R+   I      QL+++  Y+  + D +   AEK                 N  AK  
Sbjct: 955  MDRSDNGI-----DQLESARDYLQSIEDYISSKAEKLRSIDGGNNGQGRGRGINHTAKIS 1009

Query: 1125 ----QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGI 1180
                  F+     K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   M++T G+
Sbjct: 1010 ARTLAAFITSCLVKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGV 1069

Query: 1181 PRLQEILTIASKDIKTPVITCPLL 1204
            PR++EI+  ASK+I TPVITC L+
Sbjct: 1070 PRIKEIIN-ASKEISTPVITCQLV 1092



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C TCG    +C GHFGH+ LV+P ++   F L+ ++L+ IC  C H    +  RR   K 
Sbjct: 78  CDTCGGGLQICSGHFGHVRLVLPAFHVGYFKLVISILQEICKDCSHILLPEPERRSFLKE 137

Query: 58  VRK 60
           +R+
Sbjct: 138 LRR 140


>gi|19113092|ref|NP_596300.1| DNA-directed RNA polymerase I complex large subunit Nuc1
           [Schizosaccharomyces pombe 972h-]
 gi|3334489|sp|P15398.2|RPA1_SCHPO RecName: Full=DNA-directed RNA polymerase I subunit rpa1; AltName:
           Full=DNA-directed RNA polymerase I 190 kDa polypeptide;
           AltName: Full=DNA-directed RNA polymerase I largest
           subunit
 gi|173433|gb|AAA35326.1| RNA polymerase I largest subunit [Schizosaccharomyces pombe]
 gi|2832886|emb|CAA16827.1| DNA-directed RNA polymerase I complex large subunit Nuc1
           [Schizosaccharomyces pombe]
          Length = 1689

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 265/747 (35%), Positives = 405/747 (54%), Gaps = 92/747 (12%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC   +  CPGHFGHI L +P Y+PL F+ +Y LL+  C +CHHFK S+ +V     +
Sbjct: 63  CATCHLDERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCR 122

Query: 61  LELIIKG-----DIIAAKSLDLDLPSES--------SNPEDSDVSN----KSSCSMVTPR 103
           L+L+  G     +++   SL   +   S        S+ EDS + +    K + +++  R
Sbjct: 123 LKLLDYGLLNESEMVENVSLTEAIIKNSNGTPLEDGSDSEDSGLGHDDIAKDAATLMRIR 182

Query: 104 GNY------DNVRNLK-PQEWTSLQFAEAKLALLQFLKIETTK--CGNCKAKNPRISKPT 154
             +      D+ +N     + T+L   E K  +  F    +++  C NC++ +P   K  
Sbjct: 183 DEFVAKSIADSRQNAHIDAQLTTLLLHERKKVVRAFYHAISSRKQCDNCQSFSPNFRKEG 242

Query: 155 FGWI--------HMNGMPHA-DIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSF 205
           F  I        ++  M     IR++++R        +  +  +D G   D D+      
Sbjct: 243 FAKIFEIPLSGKNLQFMEQTGKIRSDVLRD-------TSKKHHEDEGYDGDSDSSNESEV 295

Query: 206 NGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI 265
            G     +D    ++ K    +  G K         +  ++V++ + +L+  E      +
Sbjct: 296 EGIDLFEEDPNPLKN-KSKSPIAHGAKY--------MTSTEVRNHLRRLFVKE---NVVL 343

Query: 266 SDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN 325
           S +     GK A   +FFL  + VPP +FR  SK GD V E+ Q  LL+++LQ++I +A+
Sbjct: 344 SRLYAHKRGKPASADMFFLQNIAVPPTRFRPASKMGDEVHENIQNELLTRILQSSIQIAS 403

Query: 326 AYVN-----QPDNAK----------VIVARWMNLQQSVNVLFDGK---NAAGQ-RDMASG 366
              +      PD  +          +++  ++ LQ  VN L D     ++ GQ R +  G
Sbjct: 404 LSKDSTVEVNPDEKEGLERRSRAFELLINAFVQLQHDVNSLIDSNRNPSSGGQSRTVPPG 463

Query: 367 ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
           I Q+LEKKEGLFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA +LTYPE VT +N
Sbjct: 464 IKQILEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYN 523

Query: 427 VVKLRDSIINGAEIHPGATHYLDKLSTM--RLPPNKKMRISIGRKLDTSRGAIVQ-PGKD 483
             ++R+++ING    PGA+H  ++  T+   +P   + R ++  +L T +  ++  P   
Sbjct: 524 FNEMRNAVINGPHKWPGASHIQNEDGTLISLMPLTIEQRTALANQLLTPQSNLISSPYSY 583

Query: 484 SDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNAD 543
           S      K VYRH+++GD++++NRQPTLHKPS+MAH  R+L GEKT+RMHYANC++YNAD
Sbjct: 584 SRLINTNKKVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNAD 643

Query: 544 FDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFL 603
           FDGDEMN+HFPQ   +R+EA  I N ++QY+ P++GDPLR LIQDH+V    LT KDTF 
Sbjct: 644 FDGDEMNMHFPQSTNARSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFY 703

Query: 604 NRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVIT 663
            RDE+ QLL+ +            KP +  +  R    +  L PAI +P   WTGKQ+I+
Sbjct: 704 TRDEYQQLLFQA-----------LKPDETGMYGR----IKTLPPAIQRPGIYWTGKQIIS 748

Query: 664 AV-LNHITRGRPPFVVERGGKLPQDFF 689
           +V LN     RP   ++   K+P  ++
Sbjct: 749 SVLLNLKPSDRPGLNLKSKAKVPGKYW 775



 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 227/489 (46%), Positives = 297/489 (60%), Gaps = 49/489 (10%)

Query: 748  SEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
            SEE  +++ + +L+ G++DK+ F  + +GLVH+V ELYG + AG LLS LSRLFT + QM
Sbjct: 779  SEEGSVLFDDGELLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLLSVLSRLFTAYAQM 838

Query: 805  HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID-PIKL-KSEIEK 862
             GFTC +DDL + +  +  R+  L    E GK   LEA     G   D PI L  + +E+
Sbjct: 839  RGFTCRMDDLRLDEQGDNWRRQLL----ENGKSFGLEAASEYVGLSTDSPIALLNANLEE 894

Query: 863  AMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV 922
              R   D  +   D  M  ++N  TSS +IN+ + +GLL     N +  MT SGAKGS V
Sbjct: 895  VYRD--DEKLQGLDAAMKGKMNGLTSS-IINKCIPDGLLTKFPYNHMQTMTVSGAKGSNV 951

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  QIS  LGQQELEG+RVP MVSGK+LPSF P++ + ++GGFI  RFLTG+ PQEYYFH
Sbjct: 952  NVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIASRFLTGIAPQEYYFH 1011

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV- 1041
            CMAGREGL+DTAVKTSRSGYLQRCL+K+LE L + YD++VRD+DGSIVQF YGED +DV 
Sbjct: 1012 CMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDSDGSIVQFHYGEDSLDVT 1071

Query: 1042 ---HQTSF-------------------ISKFDALAARERGRGRGRNKF-----CDKGSHT 1074
               H T F                   +S  D+  A    +   +  +      DK   +
Sbjct: 1072 KQKHLTQFEFSAKNYKSLIQKYKVKSVLSAVDSETASSYAKKALKKPYKYDPVLDKYPPS 1131

Query: 1075 FVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHK 1134
              +G   E   +       A + Y  + PD L   A K   K   + + +  F  L++ +
Sbjct: 1132 RYLGSVSEKFQR-------AVDEYTQKNPDKLI--ASKKESKLDDSLLNESKFKALMQLR 1182

Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
            +  SL  PGE VG+LASQS+GEPSTQMTLNTFH AG G  NVTLGIPRL+EI+  AS +I
Sbjct: 1183 YQQSLVDPGESVGVLASQSIGEPSTQMTLNTFHFAGFGAKNVTLGIPRLREIIMTASANI 1242

Query: 1195 KTPVITCPL 1203
            +TP +T  L
Sbjct: 1243 QTPTMTLRL 1251


>gi|195478969|ref|XP_002100717.1| GE17218 [Drosophila yakuba]
 gi|194188241|gb|EDX01825.1| GE17218 [Drosophila yakuba]
          Length = 1383

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 361/1243 (29%), Positives = 547/1243 (44%), Gaps = 268/1243 (21%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C+TCGQ    C GHFG++DL +PV++   F     +L+ IC  C H              
Sbjct: 67   CETCGQGLNECIGHFGYLDLALPVFHIGHFRSTINILQMICKACAH-------------- 112

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
              +++K                   PED  +  K    +  P  +Y   + L  Q     
Sbjct: 113  --VMLK-------------------PEDRQLYEKK---LHNPNFSYLGKKALHVQ----- 143

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGE 180
              A+AK         + TKC +C + N  + K   G + +   P+   + + +   N+ E
Sbjct: 144  MLAKAK---------KVTKCPHCGSPNGGVKKGP-GLLKILHDPYKGRKVDSLFTSNMNE 193

Query: 181  TFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSG 240
                 E  +DL              N T  G   TA                        
Sbjct: 194  MLRSTEANRDL--------------NSTL-GNYSTAEE---------------------- 216

Query: 241  PLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS-- 298
             L P  V D+ E++ + +  L    S          A      +  V VPP   R PS  
Sbjct: 217  -LTPLMVLDLFEQIPQRDVALLGMCS--------HDAHPKHLIVTRVFVPPACIR-PSVL 266

Query: 299  ---KGG----DSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVL 351
               K G    D  M+  + +L++ V+Q ++             ++I   W  LQ  V + 
Sbjct: 267  SEVKAGTTEDDLTMKQSEILLINDVIQRHMATGG-------KIELIHEDWDFLQLHVALY 319

Query: 352  FDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEI 406
            F  + +    +MA      GI Q L+ K+G FR  L GKRV+++ R+VISPDP L +N++
Sbjct: 320  FHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQV 379

Query: 407  GIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISI 466
            G+P   A  LTYPERV P N+  +R+ + NG  +HPGA +   + S+       K  ++ 
Sbjct: 380  GVPVRVAKILTYPERVNPANMRHMRELVRNGPSMHPGANYVQQRGSSF------KKYLAY 433

Query: 467  GRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKG 526
            G     +R  + Q  K  D      +V RHL+DGD+VL NRQP+LHK SIM H  +V + 
Sbjct: 434  G-----NREKVAQELKCGD------IVERHLRDGDIVLFNRQPSLHKMSIMCHRAKV-QP 481

Query: 527  EKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLI 586
            ++T R +   C+ YNADFDGDEMN+H PQ E +RAEA  ++   +  V P NG+ L +  
Sbjct: 482  QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAAT 541

Query: 587  QDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLL 646
            QD I    LLT+K+ FL ++E  QL             F       + I       LP  
Sbjct: 542  QDFITGGYLLTQKEVFLTKEEAMQLA----------ACFLANEDSTMHIK------LPP- 584

Query: 647  PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDK 706
            PA+ KP  LWTGKQ+ + ++                  P D    R N   +      + 
Sbjct: 585  PALLKPRRLWTGKQMFSLLMR-----------------PNDDSHVRLNMVNKGRNYTRNM 627

Query: 707  GKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
               S  + +H                                     I  ++L+ GV+DK
Sbjct: 628  DLCSNDSWIH-------------------------------------IRNSELMCGVMDK 650

Query: 767  AQFAD-------YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL---- 815
            A           Y L+    EL+ +      +  L+R+ + FLQ  GF+ G+ D+     
Sbjct: 651  ATMGSGTKQCIFYLLLRDFGELHATKA----MWRLARIASYFLQNRGFSFGISDVTPSKK 706

Query: 816  ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYF 875
            +L+ KE    N      E  + +    L+ + G   +       +E  M           
Sbjct: 707  LLQHKELLLNNGYSKCNEYIEMLKAGTLQCQPGCTPE-----ETLESVM----------- 750

Query: 876  DMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQE 935
             ++  S + +  + +   EL       PT  N   +M  SG+KGS +N  Q+ + +GQQ 
Sbjct: 751  -LRELSAIREQAAKTCFAEL------HPT--NSALIMALSGSKGSNINISQMIACVGQQA 801

Query: 936  LEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAV 995
            + GKRVP     + LP F      P A GF+ + F +GL P E++FH MAGREGLVDTAV
Sbjct: 802  ISGKRVPNGFENRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAV 861

Query: 996  KTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV-------HQTSFIS 1048
            KT+ +GYLQR L+K LE L + YD +VR+A   +V   YG DG+D             + 
Sbjct: 862  KTAETGYLQRRLVKCLEDLVVHYDGTVRNAVNEMVDTIYGGDGLDPVSMETRNKPVDLVH 921

Query: 1049 KFDALAARERGRGRGRNKFCDKGSHTF-VMGRNQEMIYKKCSGQLDASN--AYIMELPDA 1105
            ++D L A +  +G+ R    ++ S     +  + E    +   +LD  N    + +    
Sbjct: 922  QYDNLRA-QHPQGKDRPLPAEELSEALETLLASPEFAEARDDFKLDVRNHITTVSKRIGQ 980

Query: 1106 LKDNAEKFAD-----KFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQ 1160
            L+   EK+ +     + L+ E   Q F++ +  ++  ++ +PG  VG +A+QS+GEP TQ
Sbjct: 981  LQKRYEKYINLCHQIECLTAEQLLQ-FVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQ 1039

Query: 1161 MTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            MTL TFH AG   MN+T G+PR+ EI+  A+K I TP+IT  L
Sbjct: 1040 MTLKTFHFAGVASMNITQGVPRIVEIIN-ATKTISTPIITAEL 1081


>gi|449296109|gb|EMC92129.1| hypothetical protein BAUCODRAFT_78328 [Baudoinia compniacensis UAMH
            10762]
          Length = 1477

 Score =  414 bits (1065), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 305/972 (31%), Positives = 461/972 (47%), Gaps = 155/972 (15%)

Query: 287  VLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQANIYLANAY-VNQPDNAKVIVARWMNL 344
            V  PP+  R PS   D+   E   T  L  ++Q N  L  A  + QP     ++  W  L
Sbjct: 279  VPAPPVAIR-PSVAQDAASTEDDITNKLGDIVQINNLLKAALTLGQPITK--VMEMWEFL 335

Query: 345  QQSVNVLFDGKNAAGQRD-----MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDP 399
            Q  V +  DG      RD     M  G CQ L+ K+G FR  L GKRV+++ R+VISPDP
Sbjct: 336  QVQVAMYIDGNCPGLGRDSQWGRMMRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDP 395

Query: 400  YLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPN 459
             L ++E+ +P   A+ +TYPERVT +N+ KLR  I+ G + HPGA H       ++    
Sbjct: 396  NLGIDEVAVPVRVAMHMTYPERVTSYNIEKLRKRILRGTQKHPGANH------VVKARDG 449

Query: 460  KKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAH 519
            +K+ + I  +     G + Q     D    G +V RHL+DGD+VL NRQP+LHK SI++H
Sbjct: 450  RKIMLRIMEQ----NGKLQQV---VDRLEIGDVVERHLEDGDIVLFNRQPSLHKLSILSH 502

Query: 520  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNG 579
             V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +R EA  ++   +    P NG
Sbjct: 503  KVKV-RPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAIELMGVKHNLATPKNG 561

Query: 580  DPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSE 639
             P+ + IQD I  + L+++KD F  R +FCQ+     V+    G     P     ++  +
Sbjct: 562  TPIIAAIQDFITGSYLISQKDRFFTRRQFCQI-----VTFMFDGMHVDDP-----LTGEQ 611

Query: 640  QEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQS 699
            ++V    PAI+KP+ LWTGKQV   ++                  P   +    N D + 
Sbjct: 612  RDVQIPPPAIFKPQSLWTGKQVWNVLMK-----------------PHPSYPVNVNLDAK- 653

Query: 700  DRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-D 758
                                            G++  A    +    L  +  L+ +N +
Sbjct: 654  --------------------------------GKQYSAPLGNTAPDLLPNDSYLVVRNSE 681

Query: 759  LVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
            ++ G +DKA   D     + + +   +G   A   ++ L++L   +L   GF+ G+ D+ 
Sbjct: 682  VMCGTMDKAVIGDGKKDSIFYVIMRDFGPEYAVAAMNRLAKLSARWLTEQGFSIGISDVY 741

Query: 816  ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP-IKLKSEIEKAMRGGGDAAVAY 874
                   E++N +  +    K VHL  L  E   + DP    +  +E  + G        
Sbjct: 742  PSGKLREEKENLVKAA--YAKCVHLIKLYNEGKLQRDPGCDEEQTMENQISG-------- 791

Query: 875  FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
                + S++ +   +   +EL        +  N    M   G+KGS +N  Q+ + +GQQ
Sbjct: 792  ----ILSEVRQQCGNVCFSEL--------SRFNAPLTMAKCGSKGSNINVSQMVAAVGQQ 839

Query: 935  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
             + GKRV      +TLP F      P A GF+++ F +GL P E+ FH M+GREGLVDTA
Sbjct: 840  IIGGKRVLDGFQDRTLPHFSKNSRDPPAKGFVVNSFFSGLNPTEFIFHAMSGREGLVDTA 899

Query: 995  VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD----------VH-- 1042
            VKT+ +GY+ R L+K+LE L   YD++VR++   +VQ  +G+DG+D          VH  
Sbjct: 900  VKTAETGYMSRRLMKSLEDLSARYDHTVRNSSEGVVQMRFGDDGLDPLDMEGSAKPVHFE 959

Query: 1043 QTSFISKFDALAARERG----------------RGRGRNKFCDKGSHTFVMGRNQEMI-- 1084
            +T   +        ERG                  R   +F D G        + E +  
Sbjct: 960  RTWMHAVTSTWDNSERGLMSEEASDIVAEMLDVERRKLVRFADDGRELPFGDTSDEGVDQ 1019

Query: 1085 YKKCSGQLDASNAYIMELPDALKDNAEKFA-------------DKFLSNEMAKQDFLKLV 1131
             +   G L+    ++    +A+  +  K+                F   E A + FL L 
Sbjct: 1020 LESVRGFLETVRVFVGTKVNAVISSQAKYTGSVNGNSDLRRLPTSFKITETALRLFLTLC 1079

Query: 1132 KHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIAS 1191
              KF  S  +PG  VG + +QS+GEP TQMTL TFH AG   M++T G+PR++EI+  AS
Sbjct: 1080 LRKFEKSKVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN-AS 1138

Query: 1192 KDIKTPVITCPL 1203
            + I TPVITC L
Sbjct: 1139 RVISTPVITCAL 1150


>gi|392572905|gb|EIW66048.1| hypothetical protein TREMEDRAFT_72470 [Tremella mesenterica DSM 1558]
          Length = 1457

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 312/997 (31%), Positives = 481/997 (48%), Gaps = 191/997 (19%)

Query: 287  VLVPPIKFR--LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNL 344
            V VPP   R  + S+ G++  E   TV L+++   N  L    +      + I+A W NL
Sbjct: 263  VSVPPPAIRPSVASESGNN--EDDLTVKLAEIAHYN-KLLQLTMESGRGIEQIMANWENL 319

Query: 345  QQSVNVLFD----GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
             Q V +  +    G +  G +    G  Q L+ K+G FR  L GKRV+++ R+VI PDP 
Sbjct: 320  GQVVALYINSQTPGLSVPGSKP-NRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVIGPDPN 378

Query: 401  LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK 460
            L ++E+ +P   A++L+YPERV  +N+V +R +II+GA++HPGA + L++    + P   
Sbjct: 379  LRIDEVAVPEKVAVKLSYPERVNNYNIVAMRQAIIHGAKLHPGA-NILER----KAPDGT 433

Query: 461  KMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAH 519
             +R ++    D  R  +V        E + G +V+RH++DGD+ L NRQP+LHK SIM H
Sbjct: 434  TVRTALHMIKDVERRTLVA------RELKIGDVVHRHVRDGDIALFNRQPSLHKLSIMCH 487

Query: 520  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNG 579
             VRV +  +T R++   C+ YNADFDGDEMN+H PQ E +R EA  +++     V P NG
Sbjct: 488  RVRV-RPWRTFRLNECVCNPYNADFDGDEMNLHIPQTEEARTEALELMSVKKNLVTPRNG 546

Query: 580  DPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSE 639
            +P+ + IQD I  + LL+++D F +R +F Q+            SF            ++
Sbjct: 547  EPIIAAIQDFITGSFLLSRRDRFFSRQQFTQIC-----------SF---------FCDAD 586

Query: 640  QEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQS 699
             ++    P IWKP+ LWTGKQ+                               FN   + 
Sbjct: 587  LDIDIPPPTIWKPQRLWTGKQI-------------------------------FNVLMKP 615

Query: 700  DRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDL 759
            +R+   K  L    +  KD   K     +  P                ++  L+I  +++
Sbjct: 616  NRRSRIKVNLEAKCRTMKDPDPKDHFPPDMSP----------------NDGYLVIVNSEI 659

Query: 760  VRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLI 816
            + GV DK    D     +   +   YG + A   ++ L++L   +L   GF+ G++D++ 
Sbjct: 660  MCGVFDKNTVGDGKKKSVFGVILRDYGPDEAAAGMNRLAKLAARWLANQGFSLGINDVI- 718

Query: 817  LKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSE-IEKAMRGGGDAAVAYF 875
                              G ++HL     +DG   +  K   + IEKA +G  + A    
Sbjct: 719  -----------------PGPKLHLS----KDGKVEEAYKYCDDLIEKAKKGLLENAPGCD 757

Query: 876  DMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQE 935
                  Q    T S V  E+    +   +  N   +M T G+KGS +N  Q+ + +GQQ 
Sbjct: 758  QDTTLEQQISGTLSKVRGEVGELCMQDLSRHNAPLIMATCGSKGSVINVAQMVACVGQQI 817

Query: 936  LEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAV 995
            + G R+P     ++LP FH     P + GF+ + F TGL P E+ FH ++GREGLVDTAV
Sbjct: 818  ISGNRIPNGFQDRSLPHFHKKSRNPPSKGFVRNSFYTGLSPTEFLFHAISGREGLVDTAV 877

Query: 996  KTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD--------------- 1040
            KT+ +GY+ R L+K +E L   YD SVR+++G +VQF YG+D +D               
Sbjct: 878  KTAETGYMARRLMKAMEDLSTHYDLSVRNSEGGVVQFQYGDDMLDPACLEGDATPVDYGR 937

Query: 1041 --VHQTSFISK-------FDALAARER----------------GRGRGRNKFC------- 1068
               H +   S+       ++ LA  +R                 RGR   K         
Sbjct: 938  TWTHASRIASRGGRALLPYEVLAIAQRIFPESAEVTEPQTKRNRRGRSTKKIVSTEMLTG 997

Query: 1069 -----DK-GSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEM 1122
                 DK   +TF   R+   I K  + Q  +     +   D L+D AE++ D  + ++ 
Sbjct: 998  WESCHDKFRENTFAFVRDN--IVKVMADQRLSRG---LPPADTLED-AEEYGDLLVPDDF 1051

Query: 1123 A-----------KQD----FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFH 1167
            A            QD    FL++ + +++ S  +PG  VG + +QS+GEP TQMTL TFH
Sbjct: 1052 AIKQVLDNTNKVSQDQIRTFLEICRIRYLRSKIEPGSTVGAVGAQSIGEPGTQMTLKTFH 1111

Query: 1168 LAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
             AG   MNVTLG+PR++EI+  ASK I TP+IT  L+
Sbjct: 1112 FAGVASMNVTLGVPRIKEIIN-ASKTISTPIITAELV 1147



 Score = 45.8 bits (107), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG+    C GH+G I L +PV++   F     +L  IC  C      R+E E  +R+
Sbjct: 79  CLTCGEEPAKCVGHYGFIKLALPVFHIGYFRPTINMLSCICKTCSRILLPRQERETFLRR 138

Query: 61  L 61
            
Sbjct: 139 F 139


>gi|389744278|gb|EIM85461.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Stereum
            hirsutum FP-91666 SS1]
          Length = 1404

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 301/980 (30%), Positives = 481/980 (49%), Gaps = 165/980 (16%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARW 341
            F    + VPP+  R   +   +  E   TV L++++  N  +          A+ ++ +W
Sbjct: 246  FIWQYISVPPVCIRPSVQQDGASNEDDLTVKLTEIVFTNALIRQGLAKGAPTAQ-LMEQW 304

Query: 342  MNLQQSVNVLFDGK-----NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
              LQ SV +  + +     +  GQ+ +  G CQ L+ K+G FR  L GKRV+++ R+VIS
Sbjct: 305  EFLQLSVGMYINSEMPGVPSQMGQKPI-RGFCQRLKGKQGRFRGNLSGKRVDFSGRTVIS 363

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PDP L ++E+ +P   A  LTYPERVT +N+ +LR ++ NG ++HPGA +     S  + 
Sbjct: 364  PDPNLRIDEVAVPERVAKILTYPERVTGFNIDRLRKAVRNGCDVHPGANYVTAGSSGFKK 423

Query: 457  PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
                  R  I   L T                 G +V RH+ DGD+VL NRQP+LHK SI
Sbjct: 424  YLKFGNREGIADGLRT-----------------GDIVERHIIDGDIVLFNRQPSLHKLSI 466

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            M H V+V +  ++ R++   C+ YNADFDGDEMN+H PQ E +R EA  ++N  +  V P
Sbjct: 467  MCHRVKV-RPWRSFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEALELMNVKHNMVTP 525

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
             NG+P+ + IQD I ++ LL+++D F +R +F Q+   S  + + L              
Sbjct: 526  RNGEPVIAAIQDFITASYLLSRRDQFFDRRQFTQI--CSYFADADL-------------- 569

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
              + ++ P  P IWKP  LWTGKQV                           F    + +
Sbjct: 570  --QIDIPP--PTIWKPVRLWTGKQV---------------------------FNVLMHPN 598

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
            K+S+   N +   +K N   K  S     +            K+ + +   ++  L+I  
Sbjct: 599  KKSNVLVNVE---TKCNNQQKPDSKAYPRI------------KDPAPDLSPNDGWLVIVN 643

Query: 757  NDLVRGVIDKAQFAD------YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
            ++++ GV+DKA          +G+   +   YG + A   ++ L++L   +L   GF+ G
Sbjct: 644  SEIMCGVMDKATVGGGKKKMVFGI---IMRDYGPHEAAAAMNRLAKLCARWLANFGFSLG 700

Query: 811  VDDLL---ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGG 867
            ++D++   IL +K+          +++ ++ + + L++   A+      K ++E      
Sbjct: 701  INDVIPGPILSEKK----------DDLVEKAYAKCLDMITLAK------KGKLENKPGCD 744

Query: 868  GDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQI 927
             +  +      + S++ +      + EL        +  N   +M T G+KGS +N  Q+
Sbjct: 745  QEQTLEAMISGVLSKVREEVGQICMEEL--------SRHNAPLIMATCGSKGSVINVSQM 796

Query: 928  SSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGR 987
             + +GQQ + G RVP     ++LP F      P + GF+ + F +GL P E+ FH ++GR
Sbjct: 797  VACVGQQIIAGHRVPDGFQDRSLPHFPKKSREPPSKGFVRNSFYSGLSPTEFLFHAISGR 856

Query: 988  EGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV-------D 1040
            EGLVDTAVKT+ +GY+QR L+K LE L   YD SVR+A G +VQF YG+DG+       D
Sbjct: 857  EGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRNATGGVVQFRYGDDGLDPACLEGD 916

Query: 1041 VHQTSFISKFD---ALAARE-RG-----------RGRGRNKFCDKGSHTFVMGRNQEMIY 1085
                 F+  +    ++A R  RG           R   + +F  + S  ++      ++ 
Sbjct: 917  AQPIEFVRAWSHAASIAGRSLRGLLPYEVLEITDRELAKQRFTVECSAAYIATIRSFVLE 976

Query: 1086 KKCSGQLDASNAYIMELPDALKDNAE-----------KFADKFLSNEMAKQ------DFL 1128
               +   DA  +  M   DAL   AE             A+K + +  AK        FL
Sbjct: 977  NVATRLADARQSRGMF--DALYREAEWDEETDLSMGATAAEKAIVDNKAKVTEDQLLSFL 1034

Query: 1129 KLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILT 1188
             +   K+V +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR++EI+ 
Sbjct: 1035 NICWTKYVRAKIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN 1094

Query: 1189 IASKDIKTPVITCPLLVGKT 1208
             A+K I TP+I+C L+   +
Sbjct: 1095 -AAKVISTPIISCKLVTADS 1113


>gi|303315581|ref|XP_003067798.1| DNA-directed RNA polymerase III largest subunit, putative
            [Coccidioides posadasii C735 delta SOWgp]
 gi|240107468|gb|EER25653.1| DNA-directed RNA polymerase III largest subunit, putative
            [Coccidioides posadasii C735 delta SOWgp]
          Length = 1444

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 311/975 (31%), Positives = 474/975 (48%), Gaps = 166/975 (17%)

Query: 281  IFFLGVVLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
            +F    +  PP+  R PS G +    E   T  L  ++Q+NI L NA +N+    + I+ 
Sbjct: 266  MFLWQYIPAPPVSIR-PSVGQEGASTEDDLTAKLGDIVQSNINLKNA-INKGAPVQTIIE 323

Query: 340  RW--MNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
             W  M LQ +V +  D  G   A       GICQ L+ K+G FR  L GKRV+++ R+VI
Sbjct: 324  CWDYMQLQIAVYINSDVPGLQKADFGKPIRGICQRLKGKQGRFRGNLSGKRVDFSGRTVI 383

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMR 455
            SPDP L ++E+ +P   A+ +TYPERVT +N  KLR+ + NG +I PGA +YL K  T  
Sbjct: 384  SPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERVRNGTKIWPGA-NYLSKRGT-- 440

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
                 K+ +  G  L+            +D   EG +V RHL+DGD+VL NRQP+LHK S
Sbjct: 441  ---TFKVFLKYG-NLNLM----------ADQLEEGDVVERHLEDGDIVLFNRQPSLHKLS 486

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            I++H V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA  ++   N    
Sbjct: 487  ILSHFVKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLAT 545

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 635
            P NG+P+ + IQD I +A LL+ KD F +R  F Q+             +  +PG +   
Sbjct: 546  PKNGEPIIAAIQDFITAAYLLSSKDNFYDRGSFTQIC-----------GYMLQPGTKF-- 592

Query: 636  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
                 ++ P  PA+ KP+ LWTGKQV   VL   ++  P  V                N 
Sbjct: 593  -----DLPP--PAVLKPQMLWTGKQVFN-VLMRPSKESPVLV----------------NL 628

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
            D                                     E  A K   ++ + ++  L I 
Sbjct: 629  DAAC---------------------------------REFRAPKGTPRDLDPNDGWLCIR 655

Query: 756  KNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
             ++++ GV+DK+         + + +   +G   A   ++ LSRL   +    GF+ G+ 
Sbjct: 656  NSEIMCGVMDKSTIGSGKKDSVFYVMLRDFGPQVAAEAMNRLSRLSARWFTNIGFSIGIT 715

Query: 813  DLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
            D+            +   S    K+  +E    +  A I   K   ++EKA  G     +
Sbjct: 716  DV------------YPGDSLLQAKKQLVEEAYAQCDALIQLFK-AGKLEKAPGGDEQQNM 762

Query: 873  AYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS--LMTTSGAKGSKVNFQQISSH 930
                  + S++ +      I EL            W S  +M TSG+KGS +N  Q+ + 
Sbjct: 763  ESQISGILSKVRQQAGEQCIAEL----------SKWNSPLIMATSGSKGSTINVAQMIAL 812

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            +GQQ + G+RV      +TLP F  +   P A GF+ + F +GL P E++FH ++GREGL
Sbjct: 813  VGQQIIAGQRVQDGFQDRTLPHFPKYARQPPAKGFVRNSFFSGLIPSEFFFHAISGREGL 872

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD---------- 1040
            +DTAVKT+ +GY+ R L+K+LE L   YD +VR++  +IVQF YG+D +D          
Sbjct: 873  IDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSSNIVQFQYGDDKLDPVDMEDKAKP 932

Query: 1041 VHQTSFISKFDALAARERGRGRGRNKFCDKGSHTF-----------VMGRNQEMIYKKCS 1089
            VH     +  +     +  RG   ++  D                 ++G + E   +   
Sbjct: 933  VHFDRTFTHAETTTYSKEDRGLLPSEVMDLCRQMLAPERAKLDRFDLLGNSLEYTDRSDH 992

Query: 1090 G--QLDASNAYIMELPDALKDNAEKF-------ADKFLSNEMAKQDFLKLVKH------- 1133
            G  QL+++  ++  + D ++  A++        AD  L  +MA    +KL          
Sbjct: 993  GIDQLESNRDFLQSIEDYIQAKADRLHSATGTEADT-LEGQMALSHTVKLSAKTLTTFIT 1051

Query: 1134 ----KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTI 1189
                K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   M++T G+PR++EI+  
Sbjct: 1052 SCLTKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN- 1110

Query: 1190 ASKDIKTPVITCPLL 1204
            ASK+I TP+ITC L+
Sbjct: 1111 ASKEISTPIITCELV 1125



 Score = 44.3 bits (103), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TCG     C GHFGH+ LV+P ++   F  +  +L+ IC  C
Sbjct: 78  CETCGGALQECNGHFGHVRLVLPAFHVGYFKRVIGILQEICKDC 121


>gi|453086139|gb|EMF14181.1| DNA-directed RNA polymerase III subunit RPC1 [Mycosphaerella
            populorum SO2202]
          Length = 1484

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 329/1058 (31%), Positives = 485/1058 (45%), Gaps = 167/1058 (15%)

Query: 193  ASSDVDAPETHSFNGTFPGT--QDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDI 250
            A S V  PE  +F  TF      D    RH K                +  L P  V +I
Sbjct: 198  AKSKVKPPEMQAFEKTFEEAIKVDKEIERHMK--------------RVADDLTPLRVLNI 243

Query: 251  IEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQT 310
            ++K+   + EL      M     G+           +  PP+  R       +  E   T
Sbjct: 244  LKKVPNTDVELLG----MDPHSGGRP---EYMIWTHIPAPPVAIRPSVAQETASTEDDIT 296

Query: 311  VLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMA-----S 365
              L  ++Q +  +A A +        ++  W  LQ  + +  DG      RD A      
Sbjct: 297  NKLGDIIQVSTLIA-ATIKAGQPLYKVMDMWEFLQVQIAMYIDGNLPGLGRDSAYGKAMR 355

Query: 366  GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPW 425
            G CQ L+ K+G FR  L GKRV+++ R+VISPDP LA++E+ +P   A+ +TYPERVT  
Sbjct: 356  GFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLAIDEVAVPSRVAVIMTYPERVTKH 415

Query: 426  NVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSD 485
            N  KL+  +  G ++HPGA   +      RL     +   +G+K D  + A        D
Sbjct: 416  NYEKLKACVKRGDKVHPGANFVIKGRDKRRL-----VLKVVGQKGDLKKVA--------D 462

Query: 486  NEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
                G +V RHL+DGD+VL NRQP+LHK SI++H  ++ +  +T R++   C+ YNADFD
Sbjct: 463  QLEIGDIVERHLEDGDIVLFNRQPSLHKLSILSHRAKI-RPWRTFRLNECVCNPYNADFD 521

Query: 546  GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
            GDEMN+H PQ E +R EA  ++   N    P NG P+ + IQD I  A L+++KD F +R
Sbjct: 522  GDEMNLHVPQTEEARTEATELMGVKNNLSTPKNGSPIIAAIQDFITGAYLISQKDRFFSR 581

Query: 606  DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
              F  ++     +      +TGK          E  ++   PAIWKP+ LWTGKQ    +
Sbjct: 582  RHFTHVVGFMYNAMQAKDPYTGK----------EYPIVIPPPAIWKPQALWTGKQ----I 627

Query: 666  LNHITRGRP--PFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKK 723
             N + +  P  P  V    +L Q    TR           ND   +  T+          
Sbjct: 628  WNLLIKPHPDYPVNVNLEARLKQYAPPTR----------PNDIPDMVDTDSY-------- 669

Query: 724  KEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQE 780
                                        L+I  ++++ G  DKA   D     L + +  
Sbjct: 670  ----------------------------LVIRNSEVMCGGFDKATIGDGKKDSLFYVIMR 701

Query: 781  LYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHL 840
             +G++ A   ++ L++L   +L   GF+ G+ D              ++ SE++ KR   
Sbjct: 702  DFGADYAAAAMTRLAKLSARWLGEQGFSIGISD--------------VYPSEKLTKR--- 744

Query: 841  EALELEDGA--EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSE 898
              L L + A  + D I  K +  K  R  G       ++ ++  L+K     V  E    
Sbjct: 745  -KLNLVETAYRKCDEIIHKFKTGKLERSAGCDEEQTMEIMLSGILSK-----VRQECGDA 798

Query: 899  GLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDW 958
               + +  N    M   G+KGS +N  Q+ + +GQQ + GKRV      +TLP F     
Sbjct: 799  CFAELSKYNAPMTMAKCGSKGSNINVSQMVAVVGQQIIGGKRVLEGFQDRTLPHFLKASP 858

Query: 959  APRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISY 1018
             P A GF+ D F +GL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   Y
Sbjct: 859  DPLAKGFVFDSFFSGLTPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQY 918

Query: 1019 DYSVRDADGSIVQFCYGEDG---VDVHQTSFISKFDALAARERGRGRGRNKFC------D 1069
            D +VR++ G IVQ  +G+DG   VD+   +     D   +         ++ C      +
Sbjct: 919  DLTVRNSSGGIVQMKFGDDGLDPVDMEGNAKPINMDRTWSHSVESTWDNSEACLTKDEIE 978

Query: 1070 KGSHTFV------MGR----NQEMIY----KKCSGQLDASNA-------YIMELPDALKD 1108
              +HT +      +GR     Q + Y     K + QL+ S         Y+      +  
Sbjct: 979  TYTHTVLNKERAKLGRYTDDGQALEYADERAKSTDQLEYSRQFLDDVTNYVFTKTKKMTR 1038

Query: 1109 NAEKFADK---FLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNT 1165
            + EK A+    F   + A Q FL L   KF  S  + G  VG + +QS+GEP TQMTL T
Sbjct: 1039 SHEKLANSDAVFRITQSALQTFLHLCMLKFEKSKVEAGHAVGAVGAQSIGEPGTQMTLKT 1098

Query: 1166 FHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            FH AG   M++T G+PR++EI+  ASK I TPVITC L
Sbjct: 1099 FHFAGVAGMSITQGVPRIKEIIN-ASKVISTPVITCHL 1135


>gi|320035344|gb|EFW17285.1| DNA-directed RNA polymerase III largest subunit [Coccidioides
            posadasii str. Silveira]
          Length = 1444

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 312/975 (32%), Positives = 474/975 (48%), Gaps = 166/975 (17%)

Query: 281  IFFLGVVLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
            +F    +  PP+  R PS G +    E   T  L  ++Q+NI L NA +N+    + I+ 
Sbjct: 266  MFLWQYIPAPPVSIR-PSVGQEGASTEDDLTAKLGDIVQSNINLKNA-INKGAPVQTIIE 323

Query: 340  RW--MNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
             W  M LQ +V +  D  G   A       GICQ L+ K+G FR  L GKRV+++ R+VI
Sbjct: 324  CWDYMQLQIAVYINSDVPGLQKADFGKPIRGICQRLKGKQGRFRGNLSGKRVDFSGRTVI 383

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMR 455
            SPDP L ++E+ +P   A+ +TYPERVT +N  KLR+ + NG +I PGA +YL K  T  
Sbjct: 384  SPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERVRNGTKIWPGA-NYLSKRGT-- 440

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
                 K+ +  G  L+            +D   EG +V RHL+DGD+VL NRQP+LHK S
Sbjct: 441  ---TFKVFLKYG-NLNLM----------ADQLEEGDVVERHLEDGDIVLFNRQPSLHKLS 486

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            I++H V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA  ++   N    
Sbjct: 487  ILSHFVKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLAT 545

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 635
            P NG+P+ + IQD I +A LL+ KD F +R  F Q+             +  +PG +   
Sbjct: 546  PKNGEPIIAAIQDFITAAYLLSSKDNFYDRGSFTQIC-----------GYMLQPGTKF-- 592

Query: 636  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
                 ++ P  PA+ KP+ LWTGKQV   VL   ++  P  V                N 
Sbjct: 593  -----DLPP--PAVLKPQMLWTGKQVFN-VLMRPSKESPVLV----------------NL 628

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
            D                                     E  A K   ++ + ++  L I 
Sbjct: 629  DAAC---------------------------------REFRAPKGTPRDLDPNDGWLCIR 655

Query: 756  KNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
             ++++ GV+DK+         + + +   +G   A   ++ LSRL   +    GF+ G+ 
Sbjct: 656  NSEIMCGVMDKSTIGSGKKDSVFYVMLRDFGPQVAAEAMNRLSRLSARWFTNIGFSIGIT 715

Query: 813  DLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
            D+    D   + K  L           +E    +  A I   K   ++EKA  G     +
Sbjct: 716  DVYP-GDSLLQAKKQL-----------VEEAYAQCDALIQLFK-AGKLEKAPGGDEQQNM 762

Query: 873  AYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS--LMTTSGAKGSKVNFQQISSH 930
                  + S++ +      I EL            W S  +M TSG+KGS +N  Q+ + 
Sbjct: 763  ESQISGILSKVRQQAGEQCIAEL----------SKWNSPLIMATSGSKGSTINVAQMIAL 812

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            +GQQ + G+RV      +TLP F  +   P A GF+ + F +GL P E++FH ++GREGL
Sbjct: 813  VGQQIIAGQRVQDGFQDRTLPHFPKYARQPPAKGFVRNSFFSGLIPSEFFFHAISGREGL 872

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD---------- 1040
            +DTAVKT+ +GY+ R L+K+LE L   YD +VR++  +IVQF YG+D +D          
Sbjct: 873  IDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSSNIVQFQYGDDKLDPVDMEGKAKP 932

Query: 1041 VHQTSFISKFDALAARERGRGRGRNKFCDKGSHTF-----------VMGRNQEMIYKKCS 1089
            VH     +  +     +  RG   ++  D                 ++G + E   +   
Sbjct: 933  VHFDRTFTHAETTTYSKEDRGLLPSEVMDLCRQMLAPERAKLDRFDLLGNSLEYTDRSDH 992

Query: 1090 G--QLDASNAYIMELPDALKDNAEKF-------ADKFLSNEMAKQDFLKLVKH------- 1133
            G  QL+++  ++  + D ++  A++        AD  L  +MA    +KL          
Sbjct: 993  GIDQLESNRDFLQSIEDYIQAKADRLHSATGTEADT-LEGQMALSHTVKLSAKTLTTFIT 1051

Query: 1134 ----KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTI 1189
                K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   M++T G+PR++EI+  
Sbjct: 1052 SCLTKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN- 1110

Query: 1190 ASKDIKTPVITCPLL 1204
            ASK+I TP+ITC L+
Sbjct: 1111 ASKEISTPIITCELV 1125



 Score = 44.7 bits (104), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TCG     C GHFGH+ LV+P ++   F  +  +L+ IC  C
Sbjct: 78  CETCGGALQECNGHFGHVRLVLPAFHVGYFKRVIGILQEICKDC 121


>gi|388581035|gb|EIM21346.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
           [Wallemia sebi CBS 633.66]
          Length = 1746

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 276/758 (36%), Positives = 389/758 (51%), Gaps = 110/758 (14%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG   F CPGHFGHI+L    Y+PL F   + +L+ +C +CHHFK     V + V K
Sbjct: 63  CATCGLTSFNCPGHFGHIELPTVNYHPLFFTHCFNMLRGVCLYCHHFKLDPAVVTRYVAK 122

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQ--EWT 118
           L L+  G I  A+ +DL +    S  E+ D ++K S S +        +   K +   W 
Sbjct: 123 LSLLDYGLIDEAEQVDL-IKRGVSEAEEEDATSKMSKSALKALEKERELEAYKSRVNSWV 181

Query: 119 SLQFAEA--------------------KLALLQFLKIETTKCGNCKAKNPRISKP-TFGW 157
               ++A                    +L    F ++   KC NC A      K  +   
Sbjct: 182 KFNVSKAQQNGKTRDEYKSGLVYQTRKRLFHQLFRQMYRKKCDNCNAHAHAFRKEGSIKI 241

Query: 158 IHMNGMPHADIRAN---LIRGCNLGETFSGGEEEKD-LGASSDV------------DAPE 201
           I  +  P  + + N   L R   L E     +  ++ L   + V            D  +
Sbjct: 242 IEYSLTPKQEAQHNALGLSRPDVLKEQAVVDKNAREALKKQTQVSKDSDSSSEDEDDGED 301

Query: 202 THSFNG--TFPGTQDTAARRH---QKGSGAVPSGFKKQKDLF--SGPLLPS-DVKDIIEK 253
           T S NG  T   + DT    +   ++   A+ +  K    L   S  ++P+ +V+  + +
Sbjct: 302 TQSNNGDITMNDSNDTNGDVNIDDEEDIAAIKANNKNNAALLKRSERVVPASEVQAHLHR 361

Query: 254 LWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLL 313
           L+ NE EL S I          +A   IFF+  + VPP +FR  ++ GD++MEHPQ  LL
Sbjct: 362 LFTNEKELTSMIFSRHGPFPTNEAMADIFFMSAIPVPPTRFRPAARMGDALMEHPQNELL 421

Query: 314 SKVLQANIYLAN-----AYVNQPDNAKVIVA----------------------RWMNLQQ 346
             VLQ ++ + +     + +N  D A+ + A                        + LQ 
Sbjct: 422 GAVLQTSLRIRDYNNEMSALNDKDYAQTMAANSSLGENGIKIIRDRTYQRLLEELITLQH 481

Query: 347 SVNVLFD-GKNAA---GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLA 402
            +N   D  KN A     R+   G+ Q+LEKKEGLFR+ +MGKRVNYA RSVISPD  + 
Sbjct: 482 GINSFIDSSKNPARLPQGREPTPGVKQVLEKKEGLFRKHMMGKRVNYAARSVISPDVNIE 541

Query: 403 VNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGAT--HYLDKLSTMRLPPNK 460
            +EIG+PP FA  LTYPE VTP+NV  LR  +ING + +PGA+   Y D         ++
Sbjct: 542 TSEIGVPPVFAKTLTYPEPVTPFNVSYLRKLVINGPKNYPGASMIQYEDGRMESLEKKSQ 601

Query: 461 KMRISIGRKLDTSRGAIVQPGKDSDNEFE--------GKMVYRHLQDGDVVLVNRQPTLH 512
           + R +I  +L T       P    DN+ +         K V+RHL+DGDV+L+NRQPTLH
Sbjct: 602 EQRTAIANQLLT-------PSNRPDNQNKMTTRTSSINKKVFRHLRDGDVLLLNRQPTLH 654

Query: 513 KPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQ 572
           KPS+MAH  +VL GE+T+RMHYANC +YNADFDGDEMN+HF Q  +++AE   I N +NQ
Sbjct: 655 KPSMMAHKAKVLHGERTIRMHYANCKSYNADFDGDEMNMHFAQSAIAKAEMMFIANNDNQ 714

Query: 573 YVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQR 632
           Y+ P++G PLR LIQDH+V+ + +T K TF  RDE+ QLLY +    +    +TG     
Sbjct: 715 YLVPTSGKPLRGLIQDHVVAGSWMTMKSTFFTRDEYQQLLYGALRPEN---DYTG----- 766

Query: 633 VLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
                 E  V  L PAIWKP+PLWTGKQ+I+ VL +IT
Sbjct: 767 ------EGRVHLLPPAIWKPQPLWTGKQIISTVLKNIT 798



 Score =  367 bits (941), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 214/499 (42%), Positives = 289/499 (57%), Gaps = 46/499 (9%)

Query: 748  SEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH 805
            +E K++I    +  G+ID +QF  + YGLVH+V ELYGS  AG LLS LSRLFT +LQ  
Sbjct: 824  NENKVIIVDGVVCSGIIDSSQFGTSSYGLVHSVFELYGSECAGKLLSILSRLFTKYLQHR 883

Query: 806  GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED----GAEIDPIKLKSEIE 861
            GFTC +DDL++  +    R   L G++  G    ++++ L +    G+E     +   +E
Sbjct: 884  GFTCRMDDLILTDEGNEVRDEILEGTKNYGFEAAIDSIGLTEEQSKGSE-GKRNVLMRLE 942

Query: 862  KAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSK 921
            + +R   D  +A  D   TS+ N+   S ++ + L  GL +    N    M  +G+KGS 
Sbjct: 943  EVLRD--DNKLAMLDQTSTSK-NEQIKSQILKKTLPAGLWRRFPTNHFQAMVLTGSKGSA 999

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            VN  QIS  LGQQ LEG+RVP MVSGKTLP F P++   RAGGF+  RFLTG+RPQEYYF
Sbjct: 1000 VNASQISCLLGQQSLEGRRVPVMVSGKTLPCFKPFETDMRAGGFVAQRFLTGIRPQEYYF 1059

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV 1041
            HCMAGREGL+DTAVKT+ SGYLQRCLIK+LE +K+ YD++VRD+D S++QF YGED +DV
Sbjct: 1060 HCMAGREGLIDTAVKTANSGYLQRCLIKHLEGIKVHYDHTVRDSDNSVIQFQYGEDALDV 1119

Query: 1042 HQTSFISKFDALAARERGRGRGRN------KFCDKGSHTF-------------VMGRNQE 1082
             +  +++K+           R  N      K  ++ +  +             V+     
Sbjct: 1120 TKQVYLNKYKFAVNNYDSMMRKYNPKALIGKVDEEAAEAYMKKALKKPYKYAPVLSEYSP 1179

Query: 1083 MIYKKCSGQLDAS--NAYIMELPDAL----KDNAEKFADKFLSNEMAK-----------Q 1125
             +Y   + +  A   +AY    PD L         K +D  +   + K           +
Sbjct: 1180 SVYLGATSEKFAKDVDAYAENNPDGLLIPQSSKKNKLSDAEIEALVKKLKQQGGAIAKPK 1239

Query: 1126 DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1185
             F  L+K  +  SL +PGE VGLLASQ VGEPSTQMTLNTFH AG G  NVTLGIPRL+E
Sbjct: 1240 QFKNLLKTIYARSLVEPGEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLRE 1299

Query: 1186 ILTIASKDIKTPVITCPLL 1204
            I+  AS  IKTP +  P+ 
Sbjct: 1300 IVMTASAQIKTPTMKLPVF 1318


>gi|395330745|gb|EJF63128.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Dichomitus squalens LYAD-421 SS1]
          Length = 1404

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 315/1021 (30%), Positives = 499/1021 (48%), Gaps = 175/1021 (17%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            L P  V D+ +++   + EL        +  FG+      F    + VPP+  R PS   
Sbjct: 214  LNPLKVLDLFKRISNEDCELLGL-----RPEFGRPEQ---FIWQYISVPPVAIR-PSVAQ 264

Query: 302  DSVM-EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGK----- 355
            D    E   TV L++++ +N  +    +     A+  + +W  LQ SV +  + +     
Sbjct: 265  DGASNEDDLTVKLTEIVFSNALIKQGLLKGAPTAQ-FMEQWEFLQLSVAMYINSELPGVP 323

Query: 356  NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALR 415
            +  GQ+ +  G CQ L+ K+G FR  L GKRV+++ R+VISPDP L ++E+ +P   A  
Sbjct: 324  SQMGQKPI-RGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPERVAKI 382

Query: 416  LTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRG 475
            LTYPERVT  N+ +L+ ++ NG ++HPGA +Y+   S        K  +  G +   + G
Sbjct: 383  LTYPERVTAHNIDRLKKAVRNGCDVHPGA-NYVTAGSN-----GFKKYLKFGNRTAIADG 436

Query: 476  AIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYA 535
              V           G +V RH+ DGD+ L NRQP+LHK SIM H ++V +  ++ R++  
Sbjct: 437  LRV-----------GDIVERHVIDGDIALFNRQPSLHKLSIMCHRIKV-RPWRSFRLNEC 484

Query: 536  NCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAAL 595
             C  YNADFDGDEMN+H PQ E +R EA  +++  +  V P NG+P+ + IQD I ++ L
Sbjct: 485  VCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVTPRNGEPVIAAIQDFITASFL 544

Query: 596  LTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPL 655
            L+++DTF +R +F Q+            S+ G    ++       ++ P  P IW+P  L
Sbjct: 545  LSRRDTFFDRRQFTQIC-----------SYFGDADLQI-------DIPP--PTIWRPVRL 584

Query: 656  WTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKM 715
            WTGKQ+   ++    + R    VE                              SK NK 
Sbjct: 585  WTGKQIFNVLMRPNRKSRVFVNVE------------------------------SKCNK- 613

Query: 716  HKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---Y 772
             ++K+  K     GKP  +             ++  L+I  ++++ GV+DKA        
Sbjct: 614  -EEKADTKCYPWIGKPAPDLSP----------NDGWLVIVNSEIMCGVMDKATVGSGKKK 662

Query: 773  GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL---ILKDKERERKNHLH 829
             +   +   YG + A   ++ +++L   +L   GF+ G++D++   +L DK+       +
Sbjct: 663  SVFGVIMRDYGPHEAAAAMNRVAKLCARYLANFGFSLGINDVIPGPVLSDKKDSMVEAAY 722

Query: 830  GS-EEIGKRVHLEALELEDGAEIDPIKLKSEIEKAM---RGGGDAAVAYFDMKMTSQLNK 885
             + E++  R     LE + G + +   L++EI K +   RG     V    MK   +L++
Sbjct: 723  AACEKLIIRAKKGLLENKPGCDQEQ-TLEAEISKVLSDVRGN----VGEICMK---ELSR 774

Query: 886  HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMV 945
            H +  +                    M T G+KGS +N  Q+ + +GQQ + G RVP   
Sbjct: 775  HNAPLI--------------------MATCGSKGSVINVSQMVACVGQQIIAGHRVPDGF 814

Query: 946  SGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQR 1005
              ++LP F      P + GF+ + F TGL P E+ FH ++GREGLVDTAVKT+ +GY+QR
Sbjct: 815  QDRSLPHFPKKSRDPPSKGFVRNSFYTGLTPTEFLFHAISGREGLVDTAVKTAETGYMQR 874

Query: 1006 CLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV-----------HQTSFISKFDALA 1054
             L+K LE L   YD SVR+A G +VQF YG+DG+D            ++ ++I       
Sbjct: 875  RLMKALEDLVTHYDSSVRNAVGGVVQFRYGDDGLDPACLEGDAQPVEYERAWIHACSVAP 934

Query: 1055 ARERG-----------RGRGRNKFCDKGSHTFVMGRNQ---EMIYKKCSGQLDASNAYIM 1100
               RG           R     +F  + +  ++    +   E I +K  G++  ++    
Sbjct: 935  RSTRGLLPFEIMDHVDRALATRRFTSECTAAYIATIRKFISENIAQKL-GEVRKAHGMFE 993

Query: 1101 ELP-----DALKD--NAEKFADKFLSNEMAK------QDFLKLVKHKFVLSLAQPGEPVG 1147
             L      DA  D      +ADK   +   K      + FL +   K+V +  +PG  VG
Sbjct: 994  ALEREEEWDADTDLSMGASYADKIAVDNKVKVTEEQLKLFLDICWTKYVKAKIEPGSTVG 1053

Query: 1148 LLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
             + +QS+GEP TQMTL TFH AG   MNVTLG+PR++EI+  A+K I TP+I+C L+   
Sbjct: 1054 AVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-AAKAISTPIISCKLVTAD 1112

Query: 1208 T 1208
            +
Sbjct: 1113 S 1113



 Score = 43.5 bits (101), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TCG     C GH+ +I LVVPV++   F    ++L+ IC  C
Sbjct: 66  CETCGLNSVDCVGHYAYIKLVVPVFHIGYFKHTISILQCICKTC 109


>gi|119191177|ref|XP_001246195.1| hypothetical protein CIMG_05636 [Coccidioides immitis RS]
          Length = 1430

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 311/975 (31%), Positives = 473/975 (48%), Gaps = 166/975 (17%)

Query: 281  IFFLGVVLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
            +F    +  PP+  R PS G +    E   T  L  ++Q+NI L NA +N+    + I+ 
Sbjct: 266  MFLWQYIPAPPVSIR-PSVGQEGASTEDDLTAKLGDIVQSNINLKNA-INKGAPVQTIIE 323

Query: 340  RW--MNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
             W  M LQ +V +  D  G   A       GICQ L+ K+G FR  L GKRV+++ R+VI
Sbjct: 324  CWDYMQLQIAVYINSDVPGLQKADFGKPIRGICQRLKGKQGRFRGNLSGKRVDFSGRTVI 383

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMR 455
            SPDP L ++E+ +P   A+ +TYPERVT +N  KLR+ + NG +I PGA +YL K  T  
Sbjct: 384  SPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERVRNGTKIWPGA-NYLSKRGT-- 440

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
                 K+ +  G  L+            +D   EG +V RHL+DGD+VL NRQP+LHK S
Sbjct: 441  ---TFKVFLKYG-NLNLM----------ADQLEEGDVVERHLEDGDIVLFNRQPSLHKLS 486

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            I++H V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA  ++   N    
Sbjct: 487  ILSHFVKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLAT 545

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 635
            P NG+P+ + IQD I +A LL+ KD F +R  F Q              +  +PG +   
Sbjct: 546  PKNGEPIIAAIQDFITAAYLLSSKDNFYDRGSFTQTC-----------GYMLQPGTKF-- 592

Query: 636  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
                 ++ P  PA+ KP+ LWTGKQV   VL   ++  P  V                N 
Sbjct: 593  -----DLPP--PAVLKPQMLWTGKQVFN-VLMRPSKESPVLV----------------NL 628

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
            D                                     E  A K   ++ + ++  L I 
Sbjct: 629  DAAC---------------------------------REFRAPKGTPRDLDPNDGWLCIR 655

Query: 756  KNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
             ++++ GV+DK+         + + +   +G   A   ++ LSRL   +    GF+ G+ 
Sbjct: 656  NSEIMCGVMDKSTIGSGKKDSVFYVMLRDFGPQVAAEAMNRLSRLSARWFTNIGFSIGIT 715

Query: 813  DLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
            D+            +   S    K+  +E    +  A I   K   ++EKA  G     +
Sbjct: 716  DV------------YPGDSLLQAKKQLVEEAYAQCDALIQLFK-AGKLEKAPGGDEQQNM 762

Query: 873  AYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS--LMTTSGAKGSKVNFQQISSH 930
                  + S++ +      I EL            W S  +M TSG+KGS +N  Q+ + 
Sbjct: 763  ESQISGILSKVRQQAGEQCIAEL----------SKWNSPLIMATSGSKGSTINVAQMIAL 812

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            +GQQ + G+RV      +TLP F  +   P A GF+ + F +GL P E++FH ++GREGL
Sbjct: 813  VGQQIIAGQRVQDGFQDRTLPHFPKYARQPPAKGFVRNSFFSGLIPSEFFFHAISGREGL 872

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD---------- 1040
            +DTAVKT+ +GY+ R L+K+LE L   YD +VR++  +IVQF YG+D +D          
Sbjct: 873  IDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSSNIVQFQYGDDKLDPVDMEGKAKP 932

Query: 1041 VHQTSFISKFDALAARERGRGRGRNKFCDKGSHTF-----------VMGRNQEMIYKKCS 1089
            VH     +  +     +  RG   ++  D                 ++G + E   +   
Sbjct: 933  VHFDRTFTHAETTTYSKEDRGLLPSEVIDLCRQMLAPERAKLDRFDLLGNSLEYTDRSDH 992

Query: 1090 G--QLDASNAYIMELPDALKDNAEKF-------ADKFLSNEMAKQDFLKLVKH------- 1133
            G  QL+++  ++  + D ++  A++        AD  L  +MA    +KL          
Sbjct: 993  GIDQLESNRDFLQSIEDYIQAKADRLHSVTGTEADT-LEGQMALSHTVKLSAKTLTTFIT 1051

Query: 1134 ----KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTI 1189
                K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   M++T G+PR++EI+  
Sbjct: 1052 SCLTKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN- 1110

Query: 1190 ASKDIKTPVITCPLL 1204
            ASK+I TP+ITC L+
Sbjct: 1111 ASKEISTPIITCELV 1125



 Score = 44.7 bits (104), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TCG     C GHFGH+ LV+P ++   F  +  +L+ IC  C
Sbjct: 78  CETCGGALQECNGHFGHVRLVLPAFHVGYFKRVIGILQEICKDC 121


>gi|351708991|gb|EHB11910.1| DNA-directed RNA polymerase III subunit RPC1 [Heterocephalus glaber]
          Length = 1392

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 305/964 (31%), Positives = 462/964 (47%), Gaps = 160/964 (16%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            + M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  TQMKRFLKYGNREKMAQELKY-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRV-LKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNAN 570
            HK SIMAH+VRV +K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++   
Sbjct: 469  HKLSIMAHLVRVRVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTK 528

Query: 571  NQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPG 630
               V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                
Sbjct: 529  ANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS---------------- 572

Query: 631  QRVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFF 689
              +L+ + E+  + L  PAI KP  LWTGKQ+ + +L                  P D  
Sbjct: 573  --ILVGKDEKVRVRLPHPAILKPVTLWTGKQIFSVILR-----------------PSDDN 613

Query: 690  KTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSE 749
              R N   +                  K   GK +++                    +++
Sbjct: 614  PVRANLRTKG-----------------KQYCGKGEDLC-------------------VND 637

Query: 750  EKLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHG 806
              + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   G
Sbjct: 638  SYVTIQNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRG 697

Query: 807  FTCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEK 862
            F+ G+ D+     +LK K           +E     ++EAL               ++++
Sbjct: 698  FSIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQ 740

Query: 863  AMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV 922
                  +  +    +K  S +  H  S+ + EL           N    M   G+KGS +
Sbjct: 741  QPGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFI 792

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH
Sbjct: 793  NISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFH 852

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVH 1042
             MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D  
Sbjct: 853  TMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD-- 910

Query: 1043 QTSFISKFDALAARERGRGRGRNKF---CDKGSHTFVMGRNQEMIYKKCSGQLDASNAYI 1099
              + +   D     +R     R  +    +       +  + E I KK S  L   ++++
Sbjct: 911  -PAAMEGKDEPLEFKRVLDNIRAVYPCPSEPALSKNDLALSSEAIMKK-SEFLCCQDSFL 968

Query: 1100 MELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVLSL 1139
             E+   +K  +EK     DK+  N+    +                 FL+  + K++ + 
Sbjct: 969  QEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQLEKFLETCRDKYMRAQ 1028

Query: 1140 AQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVI 1199
             +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+I
Sbjct: 1029 MEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPII 1087

Query: 1200 TCPL 1203
            T  L
Sbjct: 1088 TAQL 1091



 Score = 47.4 bits (111), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHILLSKEE 121


>gi|4995|emb|CAA32887.1| unnamed protein product [Schizosaccharomyces pombe]
          Length = 1689

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 265/747 (35%), Positives = 404/747 (54%), Gaps = 92/747 (12%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC   +  CPGHFGHI L  P Y+PL F+ +Y LL+  C +CHHFK S+ +V     +
Sbjct: 63  CATCHLAERYCPGHFGHIVLPSPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCR 122

Query: 61  LELIIKG-----DIIAAKSLDLDLPSES--------SNPEDSDVSN----KSSCSMVTPR 103
           L+L+  G     +++   SL   +   S        S+ EDS + +    K + +++  R
Sbjct: 123 LKLLDYGLLNESEMVENVSLTEAIIKNSNGTPLEDGSDSEDSGLGHDDIAKDAATLMRIR 182

Query: 104 GNY------DNVRNLK-PQEWTSLQFAEAKLALLQFLKIETTK--CGNCKAKNPRISKPT 154
             +      D+ +N     + T+L   E K  +  F    +++  C NC++ +P   K  
Sbjct: 183 DEFVAKSIADSRQNAHIDAQLTTLLLHERKKVVRAFYHAISSRKQCDNCQSFSPNFRKEG 242

Query: 155 FGWI--------HMNGMPHA-DIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSF 205
           F  I        ++  M     IR++++R        +  +  +D G   D D+      
Sbjct: 243 FAKIFEIPLSGKNLQFMEQTGKIRSDVLRD-------TSKKHHEDEGYDGDSDSSNESEV 295

Query: 206 NGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI 265
            G     +D    ++ K    +  G K         +  ++V++ + +L+  E      +
Sbjct: 296 EGIDLFEEDPNPLKN-KSKSPIAHGAKY--------MTSTEVRNHLRRLFVKE---NVVL 343

Query: 266 SDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN 325
           S +     GK A   +FFL  + VPP +FR  SK GD V E+ Q  LL+++LQ++I +A+
Sbjct: 344 SRLYAHKRGKPASADMFFLQNIAVPPTRFRPASKMGDEVHENIQNELLTRILQSSIQIAS 403

Query: 326 AYVN-----QPDNAK----------VIVARWMNLQQSVNVLFDGK---NAAGQ-RDMASG 366
              +      PD  +          +++  ++ LQ  VN L D     ++ GQ R +  G
Sbjct: 404 LSKDSTVEVNPDEKEGLERRSRAFELLINAFVQLQHDVNSLIDSNRNPSSGGQSRTVPPG 463

Query: 367 ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
           I Q+LEKKEGLFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA +LTYPE VT +N
Sbjct: 464 IKQILEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYN 523

Query: 427 VVKLRDSIINGAEIHPGATHYLDKLSTM--RLPPNKKMRISIGRKLDTSRGAIVQ-PGKD 483
             ++R+++ING    PGA+H  ++  T+   +P   + R ++  +L T +  ++  P   
Sbjct: 524 FNEMRNAVINGPHKWPGASHIQNEDGTLISLMPLTIEQRTALANQLLTPQSNLISSPYSY 583

Query: 484 SDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNAD 543
           S      K VYRH+++GD++++NRQPTLHKPS+MAH  R+L GEKT+RMHYANC++YNAD
Sbjct: 584 SRLINTNKKVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNAD 643

Query: 544 FDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFL 603
           FDGDEMN+HFPQ   +R+EA  I N ++QY+ P++GDPLR LIQDH+V    LT KDTF 
Sbjct: 644 FDGDEMNMHFPQSTNARSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFY 703

Query: 604 NRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVIT 663
            RDE+ QLL+ +            KP +  +  R    +  L PAI +P   WTGKQ+I+
Sbjct: 704 IRDEYQQLLFQA-----------LKPDETGMYGR----IKTLPPAIQRPGIYWTGKQIIS 748

Query: 664 AV-LNHITRGRPPFVVERGGKLPQDFF 689
           +V LN     RP   ++   K+P  ++
Sbjct: 749 SVLLNLKPSDRPGLNLKSKAKVPGKYW 775



 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 227/489 (46%), Positives = 297/489 (60%), Gaps = 49/489 (10%)

Query: 748  SEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
            SEE  +++ + +L+ G++DK+ F  + +GLVH+V ELYG + AG LLS LSRLFT + QM
Sbjct: 779  SEEGSVLFDDGELLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLLSVLSRLFTAYAQM 838

Query: 805  HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID-PIKL-KSEIEK 862
             GFTC +DDL + +  +  R+  L    E GK   LEA     G   D PI L  + +E+
Sbjct: 839  RGFTCRMDDLRLDEQGDNWRRQLL----ENGKSFGLEAASEYVGLSTDSPIALLNANLEE 894

Query: 863  AMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV 922
              R   D  +   D  M  ++N  TSS +IN+ + +GLL     N +  MT SGAKGS V
Sbjct: 895  VYRD--DEKLQGLDAAMKGKMNGLTSS-IINKCIPDGLLTKFPYNHMQTMTVSGAKGSNV 951

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  QIS  LGQQELEG+RVP MVSGK+LPSF P++ + ++GGFI  RFLTG+ PQEYYFH
Sbjct: 952  NVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIASRFLTGIAPQEYYFH 1011

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV- 1041
            CMAGREGL+DTAVKTSRSGYLQRCL+K+LE L + YD++VRD+DGSIVQF YGED +DV 
Sbjct: 1012 CMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDSDGSIVQFHYGEDSLDVT 1071

Query: 1042 ---HQTSF-------------------ISKFDALAARERGRGRGRNKF-----CDKGSHT 1074
               H T F                   +S  D+  A    +   +  +      DK   +
Sbjct: 1072 KQKHLTQFEFSAKNYKSLIQKYKVKSVLSAVDSETASSYAKKALKKPYKYDPVLDKYPPS 1131

Query: 1075 FVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHK 1134
              +G   E   +       A + Y  + PD L   A K   K   + + +  F  L++ +
Sbjct: 1132 RYLGSVSEKFQR-------AVDEYTQKNPDKLI--ASKKESKLDDSLLNESKFKALMQLR 1182

Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
            +  SL  PGE VG+LASQS+GEPSTQMTLNTFH AG G  NVTLGIPRL+EI+  AS +I
Sbjct: 1183 YQQSLVDPGESVGVLASQSIGEPSTQMTLNTFHFAGFGAKNVTLGIPRLREIIMTASANI 1242

Query: 1195 KTPVITCPL 1203
            +TP +T  L
Sbjct: 1243 QTPTMTLRL 1251


>gi|392869043|gb|EAS30407.2| DNA-directed RNA polymerase III largest subunit [Coccidioides immitis
            RS]
          Length = 1444

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 311/975 (31%), Positives = 473/975 (48%), Gaps = 166/975 (17%)

Query: 281  IFFLGVVLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
            +F    +  PP+  R PS G +    E   T  L  ++Q+NI L NA +N+    + I+ 
Sbjct: 266  MFLWQYIPAPPVSIR-PSVGQEGASTEDDLTAKLGDIVQSNINLKNA-INKGAPVQTIIE 323

Query: 340  RW--MNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
             W  M LQ +V +  D  G   A       GICQ L+ K+G FR  L GKRV+++ R+VI
Sbjct: 324  CWDYMQLQIAVYINSDVPGLQKADFGKPIRGICQRLKGKQGRFRGNLSGKRVDFSGRTVI 383

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMR 455
            SPDP L ++E+ +P   A+ +TYPERVT +N  KLR+ + NG +I PGA +YL K  T  
Sbjct: 384  SPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERVRNGTKIWPGA-NYLSKRGT-- 440

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
                 K+ +  G  L+            +D   EG +V RHL+DGD+VL NRQP+LHK S
Sbjct: 441  ---TFKVFLKYG-NLNLM----------ADQLEEGDVVERHLEDGDIVLFNRQPSLHKLS 486

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            I++H V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA  ++   N    
Sbjct: 487  ILSHFVKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLAT 545

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 635
            P NG+P+ + IQD I +A LL+ KD F +R  F Q              +  +PG +   
Sbjct: 546  PKNGEPIIAAIQDFITAAYLLSSKDNFYDRGSFTQTC-----------GYMLQPGTKF-- 592

Query: 636  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
                 ++ P  PA+ KP+ LWTGKQV   VL   ++  P  V                N 
Sbjct: 593  -----DLPP--PAVLKPQMLWTGKQVFN-VLMRPSKESPVLV----------------NL 628

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
            D                                     E  A K   ++ + ++  L I 
Sbjct: 629  DAAC---------------------------------REFRAPKGTPRDLDPNDGWLCIR 655

Query: 756  KNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
             ++++ GV+DK+         + + +   +G   A   ++ LSRL   +    GF+ G+ 
Sbjct: 656  NSEIMCGVMDKSTIGSGKKDSVFYVMLRDFGPQVAAEAMNRLSRLSARWFTNIGFSIGIT 715

Query: 813  DLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
            D+            +   S    K+  +E    +  A I   K   ++EKA  G     +
Sbjct: 716  DV------------YPGDSLLQAKKQLVEEAYAQCDALIQLFK-AGKLEKAPGGDEQQNM 762

Query: 873  AYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS--LMTTSGAKGSKVNFQQISSH 930
                  + S++ +      I EL            W S  +M TSG+KGS +N  Q+ + 
Sbjct: 763  ESQISGILSKVRQQAGEQCIAEL----------SKWNSPLIMATSGSKGSTINVAQMIAL 812

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            +GQQ + G+RV      +TLP F  +   P A GF+ + F +GL P E++FH ++GREGL
Sbjct: 813  VGQQIIAGQRVQDGFQDRTLPHFPKYARQPPAKGFVRNSFFSGLIPSEFFFHAISGREGL 872

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD---------- 1040
            +DTAVKT+ +GY+ R L+K+LE L   YD +VR++  +IVQF YG+D +D          
Sbjct: 873  IDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSSNIVQFQYGDDKLDPVDMEGKAKP 932

Query: 1041 VHQTSFISKFDALAARERGRGRGRNKFCDKGSHTF-----------VMGRNQEMIYKKCS 1089
            VH     +  +     +  RG   ++  D                 ++G + E   +   
Sbjct: 933  VHFDRTFTHAETTTYSKEDRGLLPSEVIDLCRQMLAPERAKLDRFDLLGNSLEYTDRSDH 992

Query: 1090 G--QLDASNAYIMELPDALKDNAEKF-------ADKFLSNEMAKQDFLKLVKH------- 1133
            G  QL+++  ++  + D ++  A++        AD  L  +MA    +KL          
Sbjct: 993  GIDQLESNRDFLQSIEDYIQAKADRLHSVTGTEADT-LEGQMALSHTVKLSAKTLTTFIT 1051

Query: 1134 ----KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTI 1189
                K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   M++T G+PR++EI+  
Sbjct: 1052 SCLTKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN- 1110

Query: 1190 ASKDIKTPVITCPLL 1204
            ASK+I TP+ITC L+
Sbjct: 1111 ASKEISTPIITCELV 1125



 Score = 44.7 bits (104), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TCG     C GHFGH+ LV+P ++   F  +  +L+ IC  C
Sbjct: 78  CETCGGALQECNGHFGHVRLVLPAFHVGYFKRVIGILQEICKDC 121


>gi|427788425|gb|JAA59664.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
          Length = 1390

 Score =  411 bits (1057), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 313/960 (32%), Positives = 467/960 (48%), Gaps = 173/960 (18%)

Query: 289  VPPIKFRLPS-----KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMN 343
            VPP+  R PS     K G +  E   TV L++++  N  L     N      +I+  W  
Sbjct: 257  VPPLCIR-PSVVSALKAGTN--EDDVTVKLTEIIFLNDVLQKHRTNG-GKMSMIMEDWDF 312

Query: 344  LQQSVNVLFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
            LQ    +  + + +    +M       G  Q L+ K G FR  L GKRV+++ R+VISPD
Sbjct: 313  LQLQCALYVNSETSGIPLNMQPKKPTRGFVQRLKGKHGRFRGNLSGKRVDFSGRTVISPD 372

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP 458
            P L ++E+G+P + A  LTYPERVT  N+  +R  I NG ++HPGA ++L+   T     
Sbjct: 373  PNLRIDEVGVPEHVAKILTYPERVTQHNIELMRQLIRNGCDVHPGA-NFLECRGT----- 426

Query: 459  NKKMRISIGRKLDT-SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIM 517
                   I R L   +R  + Q  +       G MV RHL+DGDVVL NRQP+LHK SIM
Sbjct: 427  ------GIKRYLRYGNREQLAQQLR------LGDMVERHLKDGDVVLFNRQPSLHKLSIM 474

Query: 518  AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
            AHV +VL   +T R +   C+ YNADFDGDEMN+H PQ E +RAEA  ++      V P 
Sbjct: 475  AHVAKVLP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALILMGTRANLVTPR 533

Query: 578  NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISR 637
            NG+PL + IQD I    L+T+KD FL+R + CQL      +S  L    GK       + 
Sbjct: 534  NGEPLIAAIQDFITGGYLITQKDVFLDRIKACQL------ASCMLA---GKD------TN 578

Query: 638  SEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADK 697
             + E+ P  PAI KP  LWTGKQ+ + ++      RP                       
Sbjct: 579  MKVELPP--PAILKPVCLWTGKQIFSLIM------RP----------------------- 607

Query: 698  QSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN 757
                        S+++ +      K K    G             +E  +++  +LI  +
Sbjct: 608  ------------SRSSPVMACLRAKGKSYTSG-------------EEMCVNDAYVLIRNS 642

Query: 758  DLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
            +L+ G +DK      +   + + +   YG   A   +  L RL   ++Q  GF+ G+ D+
Sbjct: 643  ELLSGTMDKGTMGSGSKNNIFYILLRDYGDQYAADAMWRLVRLTAYYIQNRGFSIGIGDV 702

Query: 815  L----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
                 ++K K+          EE  +++    L+ + G        + E  +A+      
Sbjct: 703  TPGAGLIKAKQDLVSAGYARCEEYIQQLKCGKLQAQPGCN------EEETLEAV------ 750

Query: 871  AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
                  +K  S +  H   + + EL           N   +M   G+KGS +N  Q+ + 
Sbjct: 751  -----CLKELSVVRDHAGKACLRELHK--------TNSPLIMAVCGSKGSFINISQMIAC 797

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            +GQQ + G RVP     ++LP F   D +P+A GF+ D F +GL P E++FH M GREGL
Sbjct: 798  VGQQAISGHRVPNGFEDRSLPHFEKHDRSPQARGFVEDSFYSGLTPTEFFFHTMGGREGL 857

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISK- 1049
            VDTAVKT+ +GY+QR L+K+LE L   YD SVR++ G +VQFCYG DG+D    S   K 
Sbjct: 858  VDTAVKTAETGYMQRRLVKSLEDLCCHYDRSVRNSCGEVVQFCYGADGLD--PASMEGKD 915

Query: 1050 -----FDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDAS---NAYIME 1101
                 F  +    R R   RN+         ++  ++E++     G  D S    ++  +
Sbjct: 916  DKPVDFGRVMEVTRARNTHRNE--PPLDMDGILQLSKEIL-----GGEDMSVCGESFRND 968

Query: 1102 LPDALKDNAEKFADKFLSNEMAKQD-----------------FLKLVKHKFVLSLAQPGE 1144
            L   L   A+  A+ +   ++ ++D                 F    + K++ S+ +P  
Sbjct: 969  LEAFLTTYAKGVAETYTLYKVKERDIPVLKQLNRLTASQLRSFFDTCREKYLRSVMEPAT 1028

Query: 1145 PVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
             VG + +QS+GEP+TQMTL TFH AG   MN+T G+PR++EI+  ASK+I TP+IT  L+
Sbjct: 1029 AVGAVCAQSIGEPATQMTLKTFHFAGVASMNITQGVPRIKEIIN-ASKNISTPIITAALM 1087



 Score = 44.7 bits (104), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TCG+    C GHFG + L +PV++   F  +Y +L  +C  C
Sbjct: 69  CETCGKGLTDCVGHFGQVSLGMPVFHVGYFKAVYNILHTVCKMC 112


>gi|336386001|gb|EGO27147.1| hypothetical protein SERLADRAFT_446372 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1403

 Score =  411 bits (1056), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 306/1004 (30%), Positives = 479/1004 (47%), Gaps = 173/1004 (17%)

Query: 259  FELCSFISDMQQQGFGKKAGHSI---FFLGVVLVPPIKFRLPSKGGDSVM-EHPQTVLLS 314
             +L   ISD   +  G +  H     +    + VPP+  R PS   D    E   TV L+
Sbjct: 220  LDLFKRISDEDCELLGLRPAHGRPEEYIWQYISVPPVCIR-PSVAQDGASNEDDLTVKLT 278

Query: 315  KVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGK-----NAAGQRDMASGICQ 369
            +++  N  +          A+  +  W  LQ SV +  + +     +  GQ+ M  G  Q
Sbjct: 279  EIVFTNALIKQGLSKGAPTAQ-FMEHWEFLQLSVAMYINSELPGVPSQPGQKPM-RGFVQ 336

Query: 370  LLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVK 429
             L+ K+G FR  L GKRV+++ R+VISPDP L ++E+ +P   A  LTYPERVTP N+  
Sbjct: 337  RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPERVAKVLTYPERVTPHNIEG 396

Query: 430  LRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE 489
            L+ ++ NG ++HPGA +     S        K  +  G     +R A+      +D    
Sbjct: 397  LKQAVRNGCDVHPGANYVTAGSSGF------KKFLKFG-----NRNAV------ADTLRV 439

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G  V RH+ +GD+VL NRQP+LHK SIM H V++ +  ++ R++   C  YNADFDGDEM
Sbjct: 440  GDTVERHIINGDIVLFNRQPSLHKLSIMCHRVKI-RPWRSFRLNECVCGPYNADFDGDEM 498

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ E +R EA  +++  +  V P NG+P+ + IQD I ++ L+++KDTF +R  F 
Sbjct: 499  NLHVPQTEEARTEALELMSVKHNLVTPRNGEPVIAAIQDFITASYLISRKDTFFDRRSFT 558

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
            Q+                        + ++ ++    PAIWKP  LWTGKQ+   ++   
Sbjct: 559  QIC--------------------CYFADADMQIDIPPPAIWKPVRLWTGKQIFNVLMR-- 596

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
                           P    K   N + + ++ +  K +     K   D S         
Sbjct: 597  ---------------PNKDSKVFVNVESKCNKPQEPKAEFYPRMKPAPDLSP-------- 633

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNT 786
                              ++  L+I  ++++ GV+DKA         +   +   YG + 
Sbjct: 634  ------------------NDGWLVIVNSEIMCGVMDKATVGSGKKKSIFGVIMRDYGPHE 675

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLL---ILKDKERERKNHLHGSEEIGKRVHLEAL 843
            A   ++ L++L   +L   GF+ G++D++   IL  K+          +E+ ++ + + L
Sbjct: 676  AAAAMNRLAKLCARWLANFGFSLGINDVIPGPILAAKK----------DELVEKAYADCL 725

Query: 844  ELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKP 903
            +L   A+      K ++E       +  +      + S++        + EL        
Sbjct: 726  DLIAQAK------KGKLENKPGCNQEQTLEALISSVLSKVRDAVGEICMKEL-------- 771

Query: 904  TGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAG 963
            +  N   +M T G+KGS +N  Q+ + +GQQ + G RVP     ++LP F      P + 
Sbjct: 772  SRHNAPLIMATCGSKGSVINVSQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSKEPPSK 831

Query: 964  GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
            GF+ + F +GLR  E+ FH ++GREGLVDTAVKT+ +GY+QR L+K LE L   YD SVR
Sbjct: 832  GFVRNSFYSGLRATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVR 891

Query: 1024 DADGSIVQFCYGEDGV-------DVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFV 1076
            ++ G +VQF YG+DG+       D     F   +    A   G  RGR+       +  +
Sbjct: 892  NSTGGVVQFTYGDDGLDPACLEGDAQPIEFERAWS--HALSIGNRRGRSLL----PYEVL 945

Query: 1077 MGRNQEMIYKKCSGQLDAS-----NAYIME--------------LPDALKDNAEKFADKF 1117
               +QE+  K+ + +  A+       YI +              + DAL+  AE  AD  
Sbjct: 946  EIVDQELSTKRFTTECTAAYLATIRGYITDNVAHTLATMRQSRGMFDALERAAEWDADTD 1005

Query: 1118 LSNEMAKQD-----------------FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQ 1160
            LS   +  D                 FL+L   K+V +  +PG  VG + +QS+GEP TQ
Sbjct: 1006 LSLGASDADKAIVDNKSKVTEDQLRCFLELCWVKYVKARIEPGSTVGAVGAQSIGEPGTQ 1065

Query: 1161 MTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            MTL TFH AG   MNVTLG+PR++EI+  A+K I TP+I+C L+
Sbjct: 1066 MTLKTFHFAGVASMNVTLGVPRIKEIIN-AAKAISTPIISCKLV 1108


>gi|427798211|gb|JAA64557.1| Putative rna polymerase i large subunit, partial [Rhipicephalus
            pulchellus]
          Length = 1429

 Score =  411 bits (1056), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 313/960 (32%), Positives = 467/960 (48%), Gaps = 173/960 (18%)

Query: 289  VPPIKFRLPS-----KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMN 343
            VPP+  R PS     K G +  E   TV L++++  N  L     N      +I+  W  
Sbjct: 257  VPPLCIR-PSVVSALKAGTN--EDDVTVKLTEIIFLNDVLQKHRTNG-GKMSMIMEDWDF 312

Query: 344  LQQSVNVLFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
            LQ    +  + + +    +M       G  Q L+ K G FR  L GKRV+++ R+VISPD
Sbjct: 313  LQLQCALYVNSETSGIPLNMQPKKPTRGFVQRLKGKHGRFRGNLSGKRVDFSGRTVISPD 372

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP 458
            P L ++E+G+P + A  LTYPERVT  N+  +R  I NG ++HPGA ++L+   T     
Sbjct: 373  PNLRIDEVGVPEHVAKILTYPERVTQHNIELMRQLIRNGCDVHPGA-NFLECRGT----- 426

Query: 459  NKKMRISIGRKLDT-SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIM 517
                   I R L   +R  + Q  +       G MV RHL+DGDVVL NRQP+LHK SIM
Sbjct: 427  ------GIKRYLRYGNREQLAQQLR------LGDMVERHLKDGDVVLFNRQPSLHKLSIM 474

Query: 518  AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
            AHV +VL   +T R +   C+ YNADFDGDEMN+H PQ E +RAEA  ++      V P 
Sbjct: 475  AHVAKVLP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALILMGTRANLVTPR 533

Query: 578  NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISR 637
            NG+PL + IQD I    L+T+KD FL+R + CQL      +S  L    GK       + 
Sbjct: 534  NGEPLIAAIQDFITGGYLITQKDVFLDRIKACQL------ASCMLA---GKD------TN 578

Query: 638  SEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADK 697
             + E+ P  PAI KP  LWTGKQ+ + ++      RP                       
Sbjct: 579  MKVELPP--PAILKPVCLWTGKQIFSLIM------RP----------------------- 607

Query: 698  QSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN 757
                        S+++ +      K K    G             +E  +++  +LI  +
Sbjct: 608  ------------SRSSPVMACLRAKGKSYTSG-------------EEMCVNDAYVLIRNS 642

Query: 758  DLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
            +L+ G +DK      +   + + +   YG   A   +  L RL   ++Q  GF+ G+ D+
Sbjct: 643  ELLSGTMDKGTMGSGSKNNIFYILLRDYGDQYAADAMWRLVRLTAYYIQNRGFSIGIGDV 702

Query: 815  L----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
                 ++K K+          EE  +++    L+ + G        + E  +A+      
Sbjct: 703  TPGAGLIKAKQDLVSAGYARCEEYIQQLKCGKLQAQPGCN------EEETLEAV------ 750

Query: 871  AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
                  +K  S +  H   + + EL           N   +M   G+KGS +N  Q+ + 
Sbjct: 751  -----CLKELSVVRDHAGKACLRELHK--------TNSPLIMAVCGSKGSFINISQMIAC 797

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            +GQQ + G RVP     ++LP F   D +P+A GF+ D F +GL P E++FH M GREGL
Sbjct: 798  VGQQAISGHRVPNGFEDRSLPHFEKHDRSPQARGFVEDSFYSGLTPTEFFFHTMGGREGL 857

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISK- 1049
            VDTAVKT+ +GY+QR L+K+LE L   YD SVR++ G +VQFCYG DG+D    S   K 
Sbjct: 858  VDTAVKTAETGYMQRRLVKSLEDLCCHYDRSVRNSCGEVVQFCYGADGLD--PASMEGKD 915

Query: 1050 -----FDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDAS---NAYIME 1101
                 F  +    R R   RN+         ++  ++E++     G  D S    ++  +
Sbjct: 916  DKPVDFGRVMEVTRARNTHRNE--PPLDMDGILQLSKEIL-----GGEDMSVCGESFRND 968

Query: 1102 LPDALKDNAEKFADKFLSNEMAKQD-----------------FLKLVKHKFVLSLAQPGE 1144
            L   L   A+  A+ +   ++ ++D                 F    + K++ S+ +P  
Sbjct: 969  LEAFLTTYAKGVAETYTLYKVKERDIPVLKQLNRLTASQLRSFFDTCREKYLRSVMEPAT 1028

Query: 1145 PVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
             VG + +QS+GEP+TQMTL TFH AG   MN+T G+PR++EI+  ASK+I TP+IT  L+
Sbjct: 1029 AVGAVCAQSIGEPATQMTLKTFHFAGVASMNITQGVPRIKEIIN-ASKNISTPIITAALM 1087



 Score = 44.7 bits (104), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TCG+    C GHFG + L +PV++   F  +Y +L  +C  C
Sbjct: 69  CETCGKGLTDCVGHFGQVSLGMPVFHVGYFKAVYNILHTVCKMC 112


>gi|195355413|ref|XP_002044186.1| GM22579 [Drosophila sechellia]
 gi|194129475|gb|EDW51518.1| GM22579 [Drosophila sechellia]
          Length = 1369

 Score =  411 bits (1056), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 360/1238 (29%), Positives = 540/1238 (43%), Gaps = 272/1238 (21%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCGQ    C GHFG++DL +PV++   F     +L+ IC  C H              
Sbjct: 67   CDTCGQGLNECIGHFGYLDLALPVFHIGHFRSTINILQMICKVCAH-------------- 112

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
              +++K                   PED  +  K    +  P  +Y   + L  Q     
Sbjct: 113  --VMLK-------------------PEDRQLYEKK---LHNPNFSYLGKKALHVQ----- 143

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGE 180
              A+AK         + TKC +C + N  + K   G + +   P+   + +L+   N+ E
Sbjct: 144  MLAKAK---------KVTKCPHCGSPNGGVKKGP-GLLKILHDPYKGRKMDLLFTSNMNE 193

Query: 181  TFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSG 240
                 +  +DL              N T  G   TA                        
Sbjct: 194  MLHSTQANRDL--------------NSTL-GNYSTAEE---------------------- 216

Query: 241  PLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS-- 298
             L P  V D+ E++ + +  L    S          A      +  V VPP   R PS  
Sbjct: 217  -LTPLMVLDLFEQIPQRDVALLGMCS--------HDAHPKHLIVTRVFVPPACIR-PSVL 266

Query: 299  ---KGG----DSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVL 351
               K G    D  M+  + +L++ V+Q ++             ++I   W  LQ  V   
Sbjct: 267  SEVKAGTTEDDLTMKQSEILLINDVIQRHMATGG-------KIELIHEDWDFLQLHV--- 316

Query: 352  FDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
                  A       GI Q L+ K+G FR  L GKRV+++ R+VISPDP L +N++G+P  
Sbjct: 317  ------ALYSTTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQVGVPVR 370

Query: 412  FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLD 471
             A  LTYPERV P N+  +R+ + NG  +HPGA +   + S+       K  ++ G    
Sbjct: 371  VAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSSF------KKYLAYG---- 420

Query: 472  TSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLR 531
             +R  + Q  K  D      +V RHL+D D+VL NRQP+LHK SIM H  +V + ++T R
Sbjct: 421  -NREKVAQELKCGD------VVERHLRDEDIVLFNRQPSLHKMSIMCHRAKV-QPQRTFR 472

Query: 532  MHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIV 591
             +   C+ YNADFDGDEMN+H PQ E +RAEA  ++   +  V P NG+ L +  QD I 
Sbjct: 473  FNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFIT 532

Query: 592  SAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWK 651
               LLT+K+ FL ++E  QL             F       + I       LP  PA+ K
Sbjct: 533  GGYLLTQKEVFLTKEEAMQLA----------ACFLANEDSTMHIK------LPP-PALLK 575

Query: 652  PEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSK 711
            P  LWTGKQ+ + ++                  P D  + R N   +      +K   S 
Sbjct: 576  PRRLWTGKQMFSLLMR-----------------PNDDSQVRLNMVNKGRNYTGNKDLCSN 618

Query: 712  TNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD 771
             + +H                                     I  ++L+ GV+DKA    
Sbjct: 619  DSWIH-------------------------------------IRNSELMCGVMDKATMGS 641

Query: 772  -------YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL----ILKDK 820
                   Y L+    EL+ +      +  L+R+ + FLQ  GF+ G+ D+     +L+ K
Sbjct: 642  GTKQCIFYLLLRDFGELHATKA----MWRLARIASYFLQNRGFSFGISDVTPSKKLLQHK 697

Query: 821  ERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMT 880
            E    N      E    +    L+ + G   +       +E  M            ++  
Sbjct: 698  ELLLNNGYAKCNEYIDLLKAGTLQCQPGCTPE-----ETLESVM------------LREL 740

Query: 881  SQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKR 940
            S + +  + +   E      L PT  N   +M  SG+KGS +N  Q+ + +GQQ + GKR
Sbjct: 741  SAIREQAAKTCFAE------LHPT--NSALIMALSGSKGSNINISQMIACVGQQAISGKR 792

Query: 941  VPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRS 1000
            VP     + LP F      P A GF+ + F +GL P E++FH MAGREGLVDTAVKT+ +
Sbjct: 793  VPNGFENRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAET 852

Query: 1001 GYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV-------HQTSFISKFDAL 1053
            GYLQR L+K LE L + YD +VR+A   +V   YG DG+D             + ++D L
Sbjct: 853  GYLQRRLVKCLEDLVVHYDGTVRNAVNEMVDTIYGGDGLDPVSMETRNKPVDLVHQYDNL 912

Query: 1054 AARERGRGRGRNKFCDKGSHTF-VMGRNQEMIYKKCSGQLDASNAY--IMELPDALKDNA 1110
             A +  +G+ R    +K S     + +  E    +   +LD  N    + +    L+   
Sbjct: 913  RA-QHPQGKDRPLNAEKMSEALETLLKTPEFAEARDDFKLDVRNHINTVSKRIGQLQKRY 971

Query: 1111 EKFAD-----KFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNT 1165
            EK  +     + L+ E   Q F++ +  ++  ++ +PG  VG +A+QS+GEP TQMTL T
Sbjct: 972  EKCINLCHQIECLTTEQLLQ-FVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKT 1030

Query: 1166 FHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            FH AG   MN+T G+PR+ EI+  A+K I TP+IT  L
Sbjct: 1031 FHFAGVASMNITQGVPRIVEIIN-ATKTISTPIITAEL 1067


>gi|407044441|gb|EKE42593.1| DNA-directed RNA polymerase I largest subunit, putative, partial
            [Entamoeba nuttalli P19]
          Length = 748

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 255/658 (38%), Positives = 377/658 (57%), Gaps = 77/658 (11%)

Query: 559  SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
            +R+E  NI  ++ QYV P NG PLR LIQDH++S+ +LTK+DTF  ++E+CQ++Y++   
Sbjct: 3    ARSEIMNIALSDEQYVVPKNGQPLRGLIQDHVISSFMLTKRDTFFTKEEYCQIVYTA--- 59

Query: 619  SSGLGSFTGKPGQRVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
                           L    EQ  + + +PAI KP P WTGKQV+TA+L HI+       
Sbjct: 60   ---------------LYGIYEQYSIRIPMPAILKPIPKWTGKQVVTAILMHISTNHCTIN 104

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEA 737
             E                          K K+S TN++++     KKE         K+ 
Sbjct: 105  FE-------------------------GKCKVS-TNEINRGGYQTKKE-----RKLMKQK 133

Query: 738  EKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALS 795
            ++   K    ++   +I  + ++ G +DK Q   ++  L+H + ELY    +G  L+ LS
Sbjct: 134  DEFTEKWSGANDSLCIIKDSQMLTGTLDKNQIGASNQSLIHAIYELYNGKVSGMCLTLLS 193

Query: 796  RLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIK 855
            RL T +LQ  G TC +DD ++  + + +R   L+ + E+ +    +  +LE  ++ D   
Sbjct: 194  RLLTTYLQRIGHTCSLDDCMLKPEFDNKRTEMLNKTNELARTAIAKHFKLEGHSKYD--- 250

Query: 856  LKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTS 915
            +   +  A R          D  + +++N+ TS+ VI E +  G L+    N ++LMTT+
Sbjct: 251  IDLALANARRR--PQLSKELDDAVKTEVNECTSN-VIKECIPYGQLRAFPWNSLALMTTT 307

Query: 916  GAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLR 975
            GAKGSKVN  QI+  LGQQELEG+RVP M +GKTLPSF  +D + RAGGFI  RFLTG+ 
Sbjct: 308  GAKGSKVNHSQITCLLGQQELEGRRVPVMATGKTLPSFPRYDTSARAGGFIASRFLTGVP 367

Query: 976  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYG 1035
            PQE++FHCMAGREGL+DTAVKT+ SGYLQRC+IK LE L + YDYSVR++DGSI++F YG
Sbjct: 368  PQEFFFHCMAGREGLIDTAVKTASSGYLQRCVIKMLESLHVEYDYSVRESDGSIIEFMYG 427

Query: 1036 EDGVDVHQTSFI-------SKFDALAARERGRG------RGRNKFCDKGSHTFVMGRNQE 1082
            +DG+DV ++ F+       + +DAL ++   +       +G ++ C             E
Sbjct: 428  DDGIDVMKSGFLNNIDFWANNYDALVSKYETKAILSKFKKGFSRACKLQKKCLRHPEKYE 487

Query: 1083 ---MIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSL 1139
                IY   +     S  Y   + D +K++      +F S ++  + F  ++  K+  SL
Sbjct: 488  PVQSIYSPSNNLAAVSEKYYKLINDYIKEDKR---GEFKSGKLDPETFKVMMMLKYNKSL 544

Query: 1140 AQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTP 1197
              PGEPVG+LA QS+GEPSTQMTLNTFHLAGRG++NVTLG+PR++E++  A K+I TP
Sbjct: 545  INPGEPVGVLAGQSIGEPSTQMTLNTFHLAGRGDVNVTLGMPRIKELVMFAKKEIATP 602


>gi|336373147|gb|EGO01485.1| hypothetical protein SERLA73DRAFT_103293 [Serpula lacrymans var.
            lacrymans S7.3]
          Length = 1400

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 306/1004 (30%), Positives = 478/1004 (47%), Gaps = 173/1004 (17%)

Query: 259  FELCSFISDMQQQGFGKKAGHSI---FFLGVVLVPPIKFRLPSKGGDSVM-EHPQTVLLS 314
             +L   ISD   +  G +  H     +    + VPP+  R PS   D    E   TV L+
Sbjct: 217  LDLFKRISDEDCELLGLRPAHGRPEEYIWQYISVPPVCIR-PSVAQDGASNEDDLTVKLT 275

Query: 315  KVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGK-----NAAGQRDMASGICQ 369
            +++  N  +          A+  +  W  LQ SV +  + +     +  GQ+ M  G  Q
Sbjct: 276  EIVFTNALIKQGLSKGAPTAQ-FMEHWEFLQLSVAMYINSELPGVPSQPGQKPM-RGFVQ 333

Query: 370  LLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVK 429
             L+ K+G FR  L GKRV+++ R+VISPDP L ++E+ +P   A  LTYPERVTP N+  
Sbjct: 334  RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPERVAKVLTYPERVTPHNIEG 393

Query: 430  LRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE 489
            L+ ++ NG ++HPGA +     S        K  +  G     +R A+      +D    
Sbjct: 394  LKQAVRNGCDVHPGANYVTAGSSGF------KKFLKFG-----NRNAV------ADTLRV 436

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G  V RH+ +GD+VL NRQP+LHK SIM H  R+ +  ++ R++   C  YNADFDGDEM
Sbjct: 437  GDTVERHIINGDIVLFNRQPSLHKLSIMCHRARI-RPWRSFRLNECVCGPYNADFDGDEM 495

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ E +R EA  +++  +  V P NG+P+ + IQD I ++ L+++KDTF +R  F 
Sbjct: 496  NLHVPQTEEARTEALELMSVKHNLVTPRNGEPVIAAIQDFITASYLISRKDTFFDRRSFT 555

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
            Q+                        + ++ ++    PAIWKP  LWTGKQ+   ++   
Sbjct: 556  QIC--------------------CYFADADMQIDIPPPAIWKPVRLWTGKQIFNVLMR-- 593

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
                           P    K   N + + ++ +  K +     K   D S         
Sbjct: 594  ---------------PNKDSKVFVNVESKCNKPQEPKAEFYPRMKPAPDLSP-------- 630

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNT 786
                              ++  L+I  ++++ GV+DKA         +   +   YG + 
Sbjct: 631  ------------------NDGWLVIVNSEIMCGVMDKATVGSGKKKSIFGVIMRDYGPHE 672

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLL---ILKDKERERKNHLHGSEEIGKRVHLEAL 843
            A   ++ L++L   +L   GF+ G++D++   IL  K+          +E+ ++ + + L
Sbjct: 673  AAAAMNRLAKLCARWLANFGFSLGINDVIPGPILAAKK----------DELVEKAYADCL 722

Query: 844  ELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKP 903
            +L   A+      K ++E       +  +      + S++        + EL        
Sbjct: 723  DLIAQAK------KGKLENKPGCNQEQTLEALISSVLSKVRDAVGEICMKEL-------- 768

Query: 904  TGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAG 963
            +  N   +M T G+KGS +N  Q+ + +GQQ + G RVP     ++LP F      P + 
Sbjct: 769  SRHNAPLIMATCGSKGSVINVSQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSKEPPSK 828

Query: 964  GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
            GF+ + F +GLR  E+ FH ++GREGLVDTAVKT+ +GY+QR L+K LE L   YD SVR
Sbjct: 829  GFVRNSFYSGLRATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVR 888

Query: 1024 DADGSIVQFCYGEDGV-------DVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFV 1076
            ++ G +VQF YG+DG+       D     F   +    A   G  RGR+       +  +
Sbjct: 889  NSTGGVVQFTYGDDGLDPACLEGDAQPIEFERAWS--HALSIGNRRGRSLL----PYEVL 942

Query: 1077 MGRNQEMIYKKCSGQLDAS-----NAYIME--------------LPDALKDNAEKFADKF 1117
               +QE+  K+ + +  A+       YI +              + DAL+  AE  AD  
Sbjct: 943  EIVDQELSTKRFTTECTAAYLATIRGYITDNVAHTLATMRQSRGMFDALERAAEWDADTD 1002

Query: 1118 LSNEMAKQD-----------------FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQ 1160
            LS   +  D                 FL+L   K+V +  +PG  VG + +QS+GEP TQ
Sbjct: 1003 LSLGASDADKAIVDNKSKVTEDQLRCFLELCWVKYVKARIEPGSTVGAVGAQSIGEPGTQ 1062

Query: 1161 MTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            MTL TFH AG   MNVTLG+PR++EI+  A+K I TP+I+C L+
Sbjct: 1063 MTLKTFHFAGVASMNVTLGVPRIKEIIN-AAKAISTPIISCKLV 1105


>gi|226294925|gb|EEH50345.1| DNA-directed RNA polymerase III subunit RPC1 [Paracoccidioides
            brasiliensis Pb18]
          Length = 1458

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 307/986 (31%), Positives = 477/986 (48%), Gaps = 188/986 (19%)

Query: 281  IFFLGVVLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
            +F    +  PP+  R PS G ++   E   T  L  ++Q+N+ L NA +N+    + I+ 
Sbjct: 266  VFLWQYIPAPPVCIR-PSVGQEAASTEDDLTAKLGDIIQSNMNLKNA-LNKGAPVQTIIE 323

Query: 340  RW--MNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
             W  M LQ +V +  D  G   A       G CQ L+ K+G FR  L GKRV+++ R+VI
Sbjct: 324  CWDHMQLQLAVYINSDVPGLQKADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSSRTVI 383

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMR 455
            SPDP L ++E+ +P   A+ +TYPE+VT +N  KLR  + NG +  PGA + L K     
Sbjct: 384  SPDPNLRIDEVAVPILVAMNMTYPEQVTRYNKEKLRQCVRNGTKTWPGANYVLKK----- 438

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
               N KM +  G            P   ++   EG +V RH++DGD+VL NRQP+LHK S
Sbjct: 439  -SQNFKMNLKFG-----------NPNLIANELEEGDIVERHIEDGDIVLFNRQPSLHKLS 486

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            I++H V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA  ++   N  V 
Sbjct: 487  ILSHFVKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLVT 545

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 635
            P NG+P+ S IQD I +A +L+ K+ F +R  F  +             +   PG R   
Sbjct: 546  PKNGEPIISAIQDFITAAYMLSSKNVFYDRKTFTHVCL-----------YMLLPGTRF-- 592

Query: 636  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
                 ++ P  P+I KP+ LWTGKQV   ++                             
Sbjct: 593  -----DLPP--PSILKPQMLWTGKQVFNILM----------------------------- 616

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
                 R   D   L     ++ D + ++ +  +G P           ++ + ++  L I 
Sbjct: 617  -----RPNKDSPVL-----VNLDAACREFKAPKGPP-----------RDLDANDRWLCIR 655

Query: 756  KNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
             ++++ GV+DK          + + +   YG   A   ++ LSRL   ++   GF+ G+ 
Sbjct: 656  NSEVMCGVMDKYTIGSGKKDSVFYVMLRDYGPAIAAEGMNRLSRLCARWITDLGFSIGIT 715

Query: 813  DLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGG 868
            D+     +L++K+   ++     +E+ ++     LE   G +      +  +E  + G  
Sbjct: 716  DVYPGDRLLEEKKELVEHAYAQCDEVIQKFKSGKLEKAPGCD-----EQMTMENIISG-- 768

Query: 869  DAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQIS 928
                      + S++ +      I+EL        +  N   +M TSG+KGS +N  Q+ 
Sbjct: 769  ----------ILSKVRQQAGDLCISEL--------SRWNTPLIMATSGSKGSNINVAQMV 810

Query: 929  SHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGRE 988
            + +GQQ + G+RV      +TLP F      P A GF+ + F +GL P E+ FH ++GRE
Sbjct: 811  ALVGQQIIGGQRVQDGFQDRTLPHFPKHARQPPAKGFVQNSFFSGLTPTEFLFHAISGRE 870

Query: 989  GLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD-------- 1040
            GLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++  SIVQF YG+D +D        
Sbjct: 871  GLVDTAVKTAETGYMSRRLMKSLEDLSTRYDGTVRNSSSSIVQFQYGDDKLDPVDMEGNA 930

Query: 1041 -------VHQTSFISKFD----------------ALAARERGRGRGRNKFCDKGSHTFVM 1077
                       S ++ FD                +L A+ER      +++   G+    M
Sbjct: 931  RPVNFDRTFTHSEVTTFDNSDKGLLPDEIMTLCQSLLAKERA---SLDRYDLMGNRLDYM 987

Query: 1078 GRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKF-------------------ADKFL 1118
             R+   I      QL+++  Y+  + D +   AEK                      K  
Sbjct: 988  DRSDNGI-----DQLESARDYLQSIEDYISSKAEKLRSIDGGNNNGQGGGRGINHTAKIS 1042

Query: 1119 SNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTL 1178
            +  +A      LVK+K   +  +PG  VG + +QS+GEP TQMTL TFH AG   M++T 
Sbjct: 1043 ARTLAAFITSCLVKYK--KAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQ 1100

Query: 1179 GIPRLQEILTIASKDIKTPVITCPLL 1204
            G+PR++EI+  ASK+I TPVITC L+
Sbjct: 1101 GVPRIKEIIN-ASKEISTPVITCQLV 1125



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C TCG    LC GHFGH+ LV+P ++   F L+ ++L+ IC  C H    +  RR   K 
Sbjct: 78  CDTCGGGLQLCSGHFGHVRLVLPAFHVGYFKLVISILQEICKDCSHILLPEPERRSFLKE 137

Query: 58  VRK 60
           +R+
Sbjct: 138 LRR 140


>gi|410216326|gb|JAA05382.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
            troglodytes]
 gi|410254866|gb|JAA15400.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
            troglodytes]
 gi|410296284|gb|JAA26742.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
            troglodytes]
 gi|410329457|gb|JAA33675.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
            troglodytes]
          Length = 1390

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 310/965 (32%), Positives = 460/965 (47%), Gaps = 164/965 (16%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            + M+       R  I ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  TQMKRFLKYGNREKIAQELKY-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQ+ + +L                  P D   
Sbjct: 571  -ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILR-----------------PSDDNP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK         GE+  A          ++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGK---------GEDLCA----------NDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 697  SIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQQ 739

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 740  PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 791

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 792  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 851

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 852  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD--P 909

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ-----EMIYKKCSGQLDASNAY 1098
             +   K + L   E  R     K          + +N+     E I KK S  L   +++
Sbjct: 910  AAMEGKDEPL---EFKRVLDNIKAVFPCPSEPALSKNELILTTESIMKK-SEFLCCQDSF 965

Query: 1099 IMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVLS 1138
            + E+   +K  +EK     DK+  N+    +                 FL+  + K++ +
Sbjct: 966  LQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQVEKFLETCRDKYMRA 1025

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+
Sbjct: 1026 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPI 1084

Query: 1199 ITCPL 1203
            IT  L
Sbjct: 1085 ITAQL 1089



 Score = 47.4 bits (111), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121


>gi|261196045|ref|XP_002624426.1| DNA-directed RNA polymerase III [Ajellomyces dermatitidis SLH14081]
 gi|239587559|gb|EEQ70202.1| DNA-directed RNA polymerase III [Ajellomyces dermatitidis SLH14081]
          Length = 1456

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 307/982 (31%), Positives = 479/982 (48%), Gaps = 171/982 (17%)

Query: 275  KKAGHSIFFLGVVLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQANIYLANA-YVNQPD 332
            ++A   +F    +  PP+  R PS G ++   E   T  L  ++Q+NI L NA Y   P 
Sbjct: 260  EEARPEVFLWQYIPAPPVCIR-PSVGQEAASTEDDLTAKLGDIIQSNINLKNALYKGAPV 318

Query: 333  NAKVIVARWMNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYA 390
               +    +M LQ +V +  D  G   A       G CQ L+ K+G FR  L GKRV+++
Sbjct: 319  QTIIECWDYMQLQLAVYINSDVPGLQKADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFS 378

Query: 391  CRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDK 450
             R+VISPDP L V+E+ +P   A+ +TYPE+VT +N  KLR  I NG +  PGA +   K
Sbjct: 379  ARTVISPDPNLRVDEVAVPQLIAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPGANYVFKK 438

Query: 451  LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPT 510
                    N KM +  G            P   +++  EG +V RH++DGD+VL NRQP+
Sbjct: 439  ------SQNFKMNLKFG-----------NPNLVANDLEEGDIVERHIEDGDIVLFNRQPS 481

Query: 511  LHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNAN 570
            LHK SI++H  +V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA  ++   
Sbjct: 482  LHKLSILSHFAKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVK 540

Query: 571  NQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL-LYSSGVSSSGLGSFTGKP 629
            N    P NG+P+ S IQD I +A +L+ KD F +R  F  + LY                
Sbjct: 541  NNLATPKNGEPIISAIQDFITAAYMLSSKDVFYDRKAFTHICLY---------------- 584

Query: 630  GQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFF 689
               +L S +  ++ P  P++ KP+ LWTGKQ+   ++      RP               
Sbjct: 585  ---MLQSDTRFDLPP--PSVIKPQMLWTGKQIFNVLM------RP--------------- 618

Query: 690  KTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSE 749
                  +KQS    N             D + +  +  +G P           ++ + ++
Sbjct: 619  ------NKQSPVLVN------------LDAACRGFKAPKGTP-----------RDLDAND 649

Query: 750  EKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHG 806
              L I  ++++ GV+DK+         + + +   +G   A   ++ LSRL   +    G
Sbjct: 650  GWLCIRNSEVMCGVMDKSTIGSGKKDSVFYVMLRDFGPEVAAEGMNRLSRLSARWFTNMG 709

Query: 807  FTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG-AEIDPIKLKSEIEKAMR 865
            F+ G+ D+    DK  E K+H+                +ED  A+ D      E+ +  R
Sbjct: 710  FSIGITDVY-PGDKLLEEKSHI----------------VEDAYAQCD------EVIQLFR 746

Query: 866  GGGDAAVAYFDMKMTSQLNKHTSSSVINELLSE--GLLKPTGKNWIS--LMTTSGAKGSK 921
             G        D +MT +   +T S +++++  +   +       W S  +M TSG+KGS 
Sbjct: 747  TGKLEKAPGCDEQMTME---NTISGILSKVRQQAGAICIAELSRWNSPLIMATSGSKGSD 803

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            +N  Q+ + +GQQ + G+RV      +TLP F      P A GF+ + F +GL P E+ F
Sbjct: 804  INVAQMVALVGQQIIGGQRVQDGFQDRTLPHFPKHARQPPAKGFVRNSFFSGLTPTEFLF 863

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD- 1040
            H ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++  +IVQF YG+D +D 
Sbjct: 864  HAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSSNIVQFQYGDDKLDP 923

Query: 1041 ---------VHQTSFISKFDALAARERGRGRGRNK---FCD--------KGSHTFVMGRN 1080
                     VH     +  +        +G   ++    C         K +   ++G+N
Sbjct: 924  VDMEGRARPVHFDRTFTHCEVTTFDNSDKGLLPDEIITLCQNLLAPARAKLTRFDLLGKN 983

Query: 1081 QEMIYKKCSG--QLDASNAYIMELPDALKDNAEKF----------------ADKFLSNEM 1122
             +   +   G  QL+++  ++  + D ++  AE+                   K  +N +
Sbjct: 984  LDYNDRSDHGIDQLESARDFLQSIEDYVRAKAERLRAIDGGTKRRGRGIDHTAKVSTNAL 1043

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
                F+     K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   M++T G+PR
Sbjct: 1044 TS--FITACLTKYKRAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPR 1101

Query: 1183 LQEILTIASKDIKTPVITCPLL 1204
            ++EI+  ASK+I TPVITC L+
Sbjct: 1102 IKEIIN-ASKEISTPVITCELV 1122



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG    +C GHFGH+ LV+P ++   F  + ++L+ IC  C H      E    +R+
Sbjct: 78  CDTCGGALQVCSGHFGHVRLVLPAFHVGYFKRVISILQEICKECSHILLPENERRAFLRE 137

Query: 61  L 61
           L
Sbjct: 138 L 138


>gi|194042171|ref|XP_001929395.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Sus
            scrofa]
          Length = 1390

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 307/965 (31%), Positives = 463/965 (47%), Gaps = 164/965 (16%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANITFLRKLVRNGPEVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            + M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  TQMKRFLKYGNREKMAQELKF-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQV + +L      RP +              
Sbjct: 571  -ILVGKDEKIKVRLPPPTILKPVTLWTGKQVFSVIL------RPSYD------------- 610

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
               N  + + R K             K   GK +++                    +++ 
Sbjct: 611  ---NPVRANLRTKG------------KQYCGKGEDLC-------------------VNDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 697  SIGIGDVTPGQGLLKAKYELLNAGYRKCDE-----YIEALN------------TGKLQQQ 739

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 740  PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 791

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 792  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 851

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 852  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD--P 909

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ-----EMIYKKCSGQLDASNAY 1098
             +   K + L   E  R     K          + +N+     E I KK +  L   +++
Sbjct: 910  AAMEGKDEPL---EFKRVLDNIKAVFPCQSEPALSKNELLLTTESIMKK-NEFLCCQDSF 965

Query: 1099 IMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVLS 1138
            + E+   +K  +EK     DK+  N+    +                 FL+  + K++ +
Sbjct: 966  LQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMRA 1025

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+
Sbjct: 1026 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPI 1084

Query: 1199 ITCPL 1203
            IT  L
Sbjct: 1085 ITAQL 1089



 Score = 47.4 bits (111), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121


>gi|409049560|gb|EKM59037.1| hypothetical protein PHACADRAFT_169499 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1403

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 313/1042 (30%), Positives = 493/1042 (47%), Gaps = 193/1042 (18%)

Query: 229  SGFKKQKDL-------FSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSI 281
            S  + QKDL           L P  V D+ +++ + + EL     +         A    
Sbjct: 194  SAIEAQKDLAMYVNRAVHEELNPLKVLDLFKRISDEDCELLGLRPEF--------ARPEE 245

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVM-EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
            +    + VPP+  R PS   D    E   TV L++++  N  +          A+  + +
Sbjct: 246  YIWQYISVPPVAIR-PSVAQDGASNEDDLTVKLTEIVFTNALIKQGLAKGAPTAQ-FMEQ 303

Query: 341  WMNLQQSVNVLFDGK-----NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
            W  LQ S+ +  + +     +  GQ+ +  G CQ L+ K+G FR  L GKRV+++ R+VI
Sbjct: 304  WDFLQLSIAMYINSELPGVPSQMGQKPI-RGFCQRLKGKQGRFRGNLSGKRVDFSGRTVI 362

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMR 455
            SPDP L ++E+ +P   A  LTYPERVT  N+  L+ +I NG ++HPGA +     S   
Sbjct: 363  SPDPNLRIDEVAVPERVAKILTYPERVTQHNLEILKKAIRNGCDVHPGANYVTAGSSGF- 421

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
                 K  +  G     +R AI      +D    G +V RH+ DGD+VL NRQP+LHK S
Sbjct: 422  -----KKFLKFG-----NRNAI------ADGLRVGDIVERHIVDGDIVLFNRQPSLHKLS 465

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            IM H V+V +  ++ R++   C  YNADFDGDEMN+H PQ E +R EA  +++  +  V 
Sbjct: 466  IMCHRVKV-RPWRSFRLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVT 524

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 635
            P NG+P+ + IQD I ++ LL+++D F +R +F Q+   S ++ + L             
Sbjct: 525  PRNGEPVIAAIQDFITASFLLSRRDRFFDRCQFTQI--CSYLADADL------------- 569

Query: 636  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
               + ++ P  P I KP+ LWTGKQ+   ++                  P    + R N 
Sbjct: 570  ---QIDIPP--PTILKPQRLWTGKQIFNVLMR-----------------PNRHSRVRVNV 607

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
            +             S+ NK+              KP  +         +   ++  L+I 
Sbjct: 608  E-------------SRCNKVE-------------KPDPKAYPRMTPVDDMSPNDGWLVIV 641

Query: 756  KNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
             ++++ GV+DKA         +   +   YG + A T +  L++L   +L  +GF+ G++
Sbjct: 642  NSEIMCGVMDKATVGSGKKKSIFGVILRDYGPHEAATAMGRLAKLCARYLANYGFSLGIN 701

Query: 813  DL----LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGG 868
            D+    ++   KE   +      +++  R     LE + G                    
Sbjct: 702  DVIPGPILAAQKESMVQKAYAECDDLIARAKKGLLENKPGC------------------- 742

Query: 869  DAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK-NWISLMTTSGAKGSKVNFQQI 927
                   D + T +    +  S + E + E  +K   + N   +M TSG+KGS +N  Q+
Sbjct: 743  -------DQEQTLEAMISSVLSNVREKVGEICMKELSRHNAPLIMATSGSKGSVINVSQM 795

Query: 928  SSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGR 987
             + +GQQ + G RVP     ++LP F      P + GF+ + F TGL P E+ FH ++GR
Sbjct: 796  VACVGQQIIAGHRVPDGFQDRSLPHFPKKSREPPSKGFVRNSFYTGLTPTEFLFHAISGR 855

Query: 988  EGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV-------D 1040
            EGLVDTAVKT+ +GY+QR L+K LE L   YD SVR+A G +VQF YG+DG+       D
Sbjct: 856  EGLVDTAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAVGGVVQFRYGDDGLDPACLEGD 915

Query: 1041 VHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIM 1100
                 ++  +   +A      RG   F        +   NQE+   K +G+  A  AY+ 
Sbjct: 916  AQPVEYLRAWSHASAIASRSSRGLFPF------EILEFVNQELAKPKFTGECSA--AYLS 967

Query: 1101 ELPDALKDN-AEKF-------------------------------ADKFLSNEMAK---- 1124
             + + + ++ A++                                ADK + +  +K    
Sbjct: 968  TIREFVSEHIAQRLANIRKSRGMFEALEREPEWSEHTDLSMGASEADKVIVDNRSKVTED 1027

Query: 1125 --QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
              + FL +   K+V +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR
Sbjct: 1028 QVRTFLAICWTKYVKAKIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPR 1087

Query: 1183 LQEILTIASKDIKTPVITCPLL 1204
            ++EI+  A+K I TP+I+C L+
Sbjct: 1088 IKEIIN-AAKVISTPIISCKLV 1108



 Score = 43.5 bits (101), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TCG     C GH+ +I L VPV++   F    T+L+ IC  C
Sbjct: 66  CETCGLNSVDCVGHYAYIKLAVPVFHIGYFKHCITILQCICKSC 109


>gi|2460208|gb|AAB86536.1| RNA polymerase III largest subunit [Homo sapiens]
          Length = 1391

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 309/965 (32%), Positives = 460/965 (47%), Gaps = 164/965 (16%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+ FR PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCFR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            + M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  TQMKRFLKYGNREKMAQELKY-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQ+ + +L                  P D   
Sbjct: 571  -ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILR-----------------PSDDNP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK         GE+  A          ++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGK---------GEDLCA----------NDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 697  SIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQQ 739

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 740  PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 791

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 792  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 851

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 852  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD--P 909

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ-----EMIYKKCSGQLDASNAY 1098
             +   K + L   E  R     K          + +N+     E I KK S  L   +++
Sbjct: 910  AAMEGKDEPL---EFKRVLDNIKAVFPCPSEPALSKNELILTTESIMKK-SEFLCCQDSF 965

Query: 1099 IMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVLS 1138
            + E+   +K  +EK     DK+  N+    +                 FL+  + K++ +
Sbjct: 966  LQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQVEKFLETCRDKYMRA 1025

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +QS+GEP TQMTL TFH  G   MN+TLG+PR++EI+  ASK I TP+
Sbjct: 1026 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFGGVASMNITLGVPRIKEIIN-ASKAISTPI 1084

Query: 1199 ITCPL 1203
            IT  L
Sbjct: 1085 ITAQL 1089



 Score = 47.4 bits (111), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121


>gi|410044035|ref|XP_507865.4| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Pan
            troglodytes]
          Length = 1380

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 310/965 (32%), Positives = 460/965 (47%), Gaps = 164/965 (16%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 238  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 295

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 296  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 355

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG E+HPGA     + 
Sbjct: 356  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 415

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            + M+       R  I ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 416  TQMKRFLKYGNREKIAQELKY-----------------GDIVERHLIDGDVVLFNRQPSL 458

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 459  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 517

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 518  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 560

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQ+ + +L                  P D   
Sbjct: 561  -ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILR-----------------PSDDNP 602

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK         GE+  A          ++ 
Sbjct: 603  VRANLRTKG-----------------KQYCGK---------GEDLCA----------NDS 626

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   GF
Sbjct: 627  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 686

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 687  SIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQQ 729

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 730  PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 781

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 782  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 841

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 842  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD--P 899

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ-----EMIYKKCSGQLDASNAY 1098
             +   K + L   E  R     K          + +N+     E I KK S  L   +++
Sbjct: 900  AAMEGKDEPL---EFKRVLDNIKAVFPCPSEPALSKNELILTTESIMKK-SEFLCCQDSF 955

Query: 1099 IMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVLS 1138
            + E+   +K  +EK     DK+  N+    +                 FL+  + K++ +
Sbjct: 956  LQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQVEKFLETCRDKYMRA 1015

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+
Sbjct: 1016 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPI 1074

Query: 1199 ITCPL 1203
            IT  L
Sbjct: 1075 ITAQL 1079



 Score = 47.8 bits (112), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121


>gi|417406396|gb|JAA49858.1| Putative rna polymerase i large subunit [Desmodus rotundus]
          Length = 1390

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 306/965 (31%), Positives = 460/965 (47%), Gaps = 164/965 (16%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            + M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  TQMKRFLKYGNREKMAQELKY-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQ+ + +L                  P D   
Sbjct: 571  -ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILR-----------------PSDDSP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK +++                    +++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGKGEDLC-------------------VNDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S LSRL  V+L   GF
Sbjct: 637  YVTIQNSELMTGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLSRLAPVYLSNRGF 696

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 697  SIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQQ 739

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 740  PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 791

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 792  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 851

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 852  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD--P 909

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ-----EMIYKKCSGQLDASNAY 1098
             +   K + L   E  R     K          + +N+     E I KK +  L   +++
Sbjct: 910  AAMEGKDEPL---EFKRVLDNIKAVFPCQSEPALSKNELILTTESIMKK-NEFLCCQDSF 965

Query: 1099 IMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVLS 1138
            + E+   +K  +EK     DK+  N+    +                 FL+  + K++ +
Sbjct: 966  LQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMRA 1025

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+
Sbjct: 1026 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPI 1084

Query: 1199 ITCPL 1203
            IT  L
Sbjct: 1085 ITAQL 1089



 Score = 47.4 bits (111), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121


>gi|390600773|gb|EIN10167.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Punctularia strigosozonata HHB-11173 SS5]
          Length = 1405

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 313/1019 (30%), Positives = 488/1019 (47%), Gaps = 179/1019 (17%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            L P  V D+  ++ + +   C  +    +QG  ++     F    + VPP+  R PS   
Sbjct: 214  LNPLKVLDLFRRISDED---CELLGMKPEQGRPEE-----FIWQYISVPPVAIR-PSVAQ 264

Query: 302  DSVM-EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGK----- 355
            D    E   TV L++++  N  +           +  + +W  LQ SV +  + +     
Sbjct: 265  DGASNEDDLTVKLTEIVFTNALIKQGLAKGAPTPQ-FMEQWEFLQLSVAMYINSELPGVP 323

Query: 356  NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALR 415
            +  GQ+ +  G CQ L+ K+G FR  L GKRV+++ R+VISPDP L ++E+ +P   A  
Sbjct: 324  SQMGQKPI-RGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPERVAKI 382

Query: 416  LTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRG 475
            LTYPERVT  N+ KLR ++ NG +IHPGA +     S        K  +  G+     R 
Sbjct: 383  LTYPERVTAHNIEKLRQAVRNGCDIHPGANYVTAGSSGF------KKFLKFGK-----RD 431

Query: 476  AIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYA 535
            AI      +D    G +V RH+ DGD+VL NRQP+LHK SIM H V+V +  +T R++  
Sbjct: 432  AI------ADGLRIGDIVERHIIDGDIVLFNRQPSLHKLSIMCHRVKV-RPWRTFRLNEC 484

Query: 536  NCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAAL 595
             C  YNADFDGDEMN+H PQ E +R EA  ++N  +  V P NG+P+ + IQD I ++ L
Sbjct: 485  VCGPYNADFDGDEMNLHVPQTEEARTEALELMNIKHNLVSPRNGEPVIAAIQDFITASFL 544

Query: 596  LTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPL 655
            L+++D F +R +F Q+            S+       +       ++ P  P IWKP+ L
Sbjct: 545  LSQRDRFFDRSQFTQVC-----------SYFADANLHI-------DIPP--PTIWKPQRL 584

Query: 656  WTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKM 715
            WTGKQV   ++      RP                     +K+S+   N + K +K    
Sbjct: 585  WTGKQVFNVLM------RP---------------------NKKSNILVNVESKCNK---- 613

Query: 716  HKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---Y 772
                       VE    E          +   ++  L++  ++++ GV+DKA        
Sbjct: 614  -----------VEAPKAENYPKRMKPINDLAPNDGWLVVVNSEIMCGVMDKATLGSGKKK 662

Query: 773  GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL---ILKDKERERKNHLH 829
             +   +   YG + A   ++ +++L   +L  +GF+ G++D++   +L  K+        
Sbjct: 663  SIFGVILRDYGPHEAAAAMNRVAKLSARWLANYGFSLGINDVIPGPVLFSKK-------- 714

Query: 830  GSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSS 889
              +++ ++ +   L+L              I +A +G  +        +    +     S
Sbjct: 715  --DQLVEKAYAACLDL--------------IARAKKGLLENKAGCNQEQTLEAMISSVLS 758

Query: 890  SVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKT 949
             V +E+    L + +  N   +M T G+KGS +N  Q+ + +GQQ + G RVP     ++
Sbjct: 759  KVRDEVGEICLKELSRYNAPLIMATCGSKGSVINVAQMVACVGQQIIAGHRVPDGFQDRS 818

Query: 950  LPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK 1009
            LP F      P + GF+ + F +GL P E+ FH ++GREGLVDTAVKT+ +GY+QR L+K
Sbjct: 819  LPHFPKKSREPPSKGFVRNSFYSGLLPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMK 878

Query: 1010 NLECLKISYDYSVRDADGSIVQFCYGEDGVD-----------------VHQTSFISK--- 1049
             LE L   YD +VR+A G IVQF YG+DG+D                  H  S  S+   
Sbjct: 879  ALEDLTTHYDLTVRNAIGGIVQFRYGDDGLDPACLEGDAQPLDMERAWTHARSISSRAGR 938

Query: 1050 ----FDALAARERGRGRGRNKF---CDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMEL 1102
                ++ L   +      ++KF   C       V G   E I  + +    +   +    
Sbjct: 939  SLLPYEVLEITD--AELSQSKFVSECTAAYRATVRGFVTEHIAHRLAEVRRSRGMF---- 992

Query: 1103 PDALKDNAEKFADKFLS-----------------NEMAKQDFLKLVKHKFVLSLAQPGEP 1145
             DAL+   E  +D  LS                  E   + FL+L   K+V +  +PG  
Sbjct: 993  -DALEREDEWDSDTDLSMGADVTEKAYVENKSKVTEDQLRMFLQLCWVKYVKAKIEPGST 1051

Query: 1146 VGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR++EI+  A+K I TP+I+C L+
Sbjct: 1052 VGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-AAKVISTPIISCKLV 1109


>gi|402880352|ref|XP_003903768.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Papio
            anubis]
          Length = 1390

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 309/965 (32%), Positives = 460/965 (47%), Gaps = 164/965 (16%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFLRKLVQNGPEVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            + M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  TQMKRFLKYGNREKMAQELKY-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQ+ + +L                  P D   
Sbjct: 571  -ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILR-----------------PSDDNP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK         GE+  A          ++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGK---------GEDLCA----------NDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 697  SIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQQ 739

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 740  PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 791

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 792  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 851

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 852  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD--P 909

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ-----EMIYKKCSGQLDASNAY 1098
             +   K + L   E  R     K          + +N+     E I KK S  L   +++
Sbjct: 910  AAMEGKDEPL---EFKRVLDNIKAVFPCPSEPALSKNELILTTESIMKK-SEFLCCQDSF 965

Query: 1099 IMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVLS 1138
            + E+   +K  +EK     DK+  N+    +                 FL+  + K++ +
Sbjct: 966  LQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQVEKFLETCRDKYMRA 1025

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+
Sbjct: 1026 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPI 1084

Query: 1199 ITCPL 1203
            IT  L
Sbjct: 1085 ITAQL 1089



 Score = 47.4 bits (111), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121


>gi|355562468|gb|EHH19062.1| hypothetical protein EGK_19701 [Macaca mulatta]
 gi|355782811|gb|EHH64732.1| hypothetical protein EGM_18035 [Macaca fascicularis]
 gi|380809180|gb|AFE76465.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
 gi|383415455|gb|AFH30941.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
 gi|383415457|gb|AFH30942.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
 gi|383415459|gb|AFH30943.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
 gi|383415461|gb|AFH30944.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
 gi|383415463|gb|AFH30945.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
          Length = 1390

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 309/965 (32%), Positives = 460/965 (47%), Gaps = 164/965 (16%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFLRKLVQNGPEVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            + M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  TQMKRFLKYGNREKMAQELKY-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQ+ + +L                  P D   
Sbjct: 571  -ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILR-----------------PSDDNP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK         GE+  A          ++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGK---------GEDLCA----------NDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 697  SIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQQ 739

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 740  PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 791

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 792  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 851

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 852  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD--P 909

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ-----EMIYKKCSGQLDASNAY 1098
             +   K + L   E  R     K          + +N+     E I KK S  L   +++
Sbjct: 910  AAMEGKDEPL---EFKRVLDNIKAVFPCPSEPALSKNELILTTESIMKK-SEFLCCQDSF 965

Query: 1099 IMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVLS 1138
            + E+   +K  +EK     DK+  N+    +                 FL+  + K++ +
Sbjct: 966  LQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQVEKFLETCRDKYMRA 1025

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+
Sbjct: 1026 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPI 1084

Query: 1199 ITCPL 1203
            IT  L
Sbjct: 1085 ITAQL 1089



 Score = 47.4 bits (111), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121


>gi|431904080|gb|ELK09502.1| DNA-directed RNA polymerase III subunit RPC1 [Pteropus alecto]
          Length = 1375

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 305/965 (31%), Positives = 460/965 (47%), Gaps = 164/965 (16%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFLRKLVQNGPEVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            + M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  TQMKRFLKYGNREKMAQELKY-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQ+ + +L                  P D   
Sbjct: 571  -ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILR-----------------PSDDNP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK +++                    +++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGKGEDLC-------------------INDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 697  SIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQQ 739

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 740  PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 791

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 792  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 851

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 852  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD--P 909

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ-----EMIYKKCSGQLDASNAY 1098
             +   K + L   E  R     K          + +N+     E I KK +  L   +++
Sbjct: 910  AAMEGKDEPL---EFKRVLDNIKAVFPCQSEPALSKNELILTTESIMKK-NEFLCCQDSF 965

Query: 1099 IMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVLS 1138
            + E+   +K  +EK     DK+  N+    +                 FL+  + K++ +
Sbjct: 966  LQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMRA 1025

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+
Sbjct: 1026 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPI 1084

Query: 1199 ITCPL 1203
            IT  L
Sbjct: 1085 ITAQL 1089



 Score = 47.4 bits (111), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121


>gi|393215308|gb|EJD00799.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Fomitiporia mediterranea MF3/22]
          Length = 1403

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 318/997 (31%), Positives = 476/997 (47%), Gaps = 159/997 (15%)

Query: 259  FELCSFISDMQQQGFGKKAGHSI---FFLGVVLVPPIKFRLPSKGGDSVM-EHPQTVLLS 314
             +L   ISD   +  G    H     +    + VPP+  R PS   D    E   TV L+
Sbjct: 220  LDLFRRISDEDCELLGLNPSHGRPEEYIWQYISVPPVCIR-PSVAQDGASNEDDLTVKLT 278

Query: 315  KVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS----GICQL 370
            +++  +  +           +  + +W  LQ SV +  + +       MA     G CQ 
Sbjct: 279  EIVFTSALIKQGLAKGAPTQQ-FMEQWDFLQVSVAIYINSETPGIPIQMAQKPIRGFCQR 337

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ K+G FR  L GKRV+++ R+VISPDP L ++E+ IP   A  LTYPERVT  NV  L
Sbjct: 338  LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAIPERVAKILTYPERVTAHNVNVL 397

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
            R ++ NG ++HPGA +     S        K  +  G     +R AI      +D    G
Sbjct: 398  RYAVRNGCDVHPGANYVTAGSSGF------KKFLKFG-----NRNAI------ADGLRIG 440

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
             +V RHL DGDVVL NRQP+LHK SIM H V+V +  ++ R++   C  Y ADFDGDEMN
Sbjct: 441  DVVERHLIDGDVVLFNRQPSLHKLSIMCHRVKV-RPWRSFRLNECVCGPYGADFDGDEMN 499

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E +R EA  +++     V P NG+P+ S IQD I ++ LL+++D F +R +F Q
Sbjct: 500  IHVPQTEEARTEALTLMSIKLNLVTPRNGEPVISAIQDFITASFLLSQRDRFFDRQQFAQ 559

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            +   S    + L                + ++ P  P I KP+ LWTGKQ+   ++    
Sbjct: 560  I--CSYFCDADL----------------QIDIPP--PTILKPQRLWTGKQIFNVLM---- 595

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
              RP                     +K+S+   N + K +K                E K
Sbjct: 596  --RP---------------------NKRSNVLVNVESKCNK----------------EQK 616

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTA 787
            P        N + +   ++  L+I  ++++ GV+DKA         +   +   YG + A
Sbjct: 617  PDPANYPRMNPAPDLSPNDGYLVIVNSEIMCGVMDKATVGSGKKRSIFGVILRDYGPDEA 676

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED 847
               ++ +++L   +L   GF+ G++D++        +   +  + E    + L A   + 
Sbjct: 677  AAAMNRIAKLCARWLSNIGFSLGINDVIPGPTLSANKDKLIETAYETC--IDLIAQAKKG 734

Query: 848  GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKN 907
              E  P   + +  +AM  G           + S++      + + EL        +  N
Sbjct: 735  KLENKPGCNQEQTLEAMISG-----------VLSKVRDTVGDTCMKEL--------SRHN 775

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
               +M T G+KGS +N  Q+ + +GQQ + GKRVP     ++LP F      P + GF+ 
Sbjct: 776  APLIMATCGSKGSAINVCQMVACVGQQIIAGKRVPDGFQDRSLPHFPKKSKEPPSKGFVR 835

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
            + F TGL P E+ FH ++GREGLVDTAVKT+ +GY+QR L+K LE L   YD SVR+++G
Sbjct: 836  NSFYTGLLPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTMYDMSVRNSEG 895

Query: 1028 SIVQFCYGEDGVD----------VHQTSFISKFDALAARERGRG-------------RGR 1064
             +VQF YG+DG+D          V      S   A+++R RGRG                
Sbjct: 896  GVVQFQYGDDGLDPGCLEGDAQPVELNRSWSHARAISSR-RGRGLLPYEIIDLVDEELSS 954

Query: 1065 NKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFAD--------- 1115
             KF    S T++    Q  IY      L A       + DAL+   E  AD         
Sbjct: 955  KKFTGVCSDTYIAVLRQ-FIYDNAVKPL-AEQRKEHGMYDALQKEDEWDADTDLSMGATD 1012

Query: 1116 ---KFLSNEMAKQ-----DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFH 1167
               K +SN++         FL L   K++ +  +PG  VG + +QS+GEP TQMTL TFH
Sbjct: 1013 AEFKIISNQIKVTHTHLLTFLTLCLKKYLKAKIEPGSTVGAVGAQSIGEPGTQMTLKTFH 1072

Query: 1168 LAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
             AG   MNVTLG+PR++EI+  A+K I TP+I+C L+
Sbjct: 1073 FAGVASMNVTLGVPRIKEIIN-AAKTISTPIISCRLV 1108


>gi|39725938|ref|NP_008986.2| DNA-directed RNA polymerase III subunit RPC1 [Homo sapiens]
 gi|206729892|sp|O14802.2|RPC1_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
            polymerase III subunit C1; AltName: Full=DNA-directed RNA
            polymerase III largest subunit; AltName:
            Full=DNA-directed RNA polymerase III subunit A; AltName:
            Full=RNA polymerase III 155 kDa subunit; Short=RPC155;
            AltName: Full=RNA polymerase III subunit C160
 gi|26996801|gb|AAH41089.1| Polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Homo
            sapiens]
 gi|119575002|gb|EAW54617.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Homo
            sapiens]
 gi|168277638|dbj|BAG10797.1| DNA-directed RNA polymerase III subunit RPC1 [synthetic construct]
          Length = 1390

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 309/965 (32%), Positives = 460/965 (47%), Gaps = 164/965 (16%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            + M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  TQMKRFLKYGNREKMAQELKY-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQ+ + +L                  P D   
Sbjct: 571  -ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILR-----------------PSDDNP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK         GE+  A          ++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGK---------GEDLCA----------NDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 697  SIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQQ 739

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 740  PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 791

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 792  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 851

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 852  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD--P 909

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ-----EMIYKKCSGQLDASNAY 1098
             +   K + L   E  R     K          + +N+     E I KK S  L   +++
Sbjct: 910  AAMEGKDEPL---EFKRVLDNIKAVFPCPSEPALSKNELILTTESIMKK-SEFLCCQDSF 965

Query: 1099 IMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVLS 1138
            + E+   +K  +EK     DK+  N+    +                 FL+  + K++ +
Sbjct: 966  LQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQVEKFLETCRDKYMRA 1025

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+
Sbjct: 1026 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPI 1084

Query: 1199 ITCPL 1203
            IT  L
Sbjct: 1085 ITAQL 1089



 Score = 47.4 bits (111), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121


>gi|403297971|ref|XP_003939815.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Saimiri
            boliviensis boliviensis]
          Length = 1390

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 309/965 (32%), Positives = 460/965 (47%), Gaps = 164/965 (16%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            + M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  TQMKRFLKYGNREKMAQELKY-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQ+ + +L                  P D   
Sbjct: 571  -ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILR-----------------PSDDNP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK         GE+  A          ++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGK---------GEDLCA----------NDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 697  SIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQQ 739

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 740  PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 791

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 792  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 851

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 852  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD--P 909

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ-----EMIYKKCSGQLDASNAY 1098
             +   K + L   E  R     K          + +N+     E I KK S  L   +++
Sbjct: 910  AAMEGKDEPL---EFKRVLDNIKAVFPCPSEPALSKNELILTTESIMKK-SEFLCCQDSF 965

Query: 1099 IMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVLS 1138
            + E+   +K  +EK     DK+  N+    +                 FL+  + K++ +
Sbjct: 966  LQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQVEKFLETCRDKYMRA 1025

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+
Sbjct: 1026 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPI 1084

Query: 1199 ITCPL 1203
            IT  L
Sbjct: 1085 ITAQL 1089



 Score = 47.4 bits (111), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121


>gi|408402779|ref|YP_006860762.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrososphaera
            gargensis Ga9.2]
 gi|300521498|gb|ADK25960.1| RNA polymerase A [Candidatus Nitrososphaera gargensis]
 gi|408363375|gb|AFU57105.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrososphaera
            gargensis Ga9.2]
          Length = 1273

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 313/988 (31%), Positives = 467/988 (47%), Gaps = 174/988 (17%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P+ F ++ D     LLP  +++ +  + +++  L  +          + A    F L V+
Sbjct: 163  PTIFVEKTDAGENRLLPITIRERLSHIPDDDLTLLGYDP--------RTARPEWFVLQVL 214

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNL- 344
             VPP+  R PS   ++ +  E   T  L  +++ N  L  +   +     +IV   ++L 
Sbjct: 215  PVPPVTVR-PSIILETGIRSEDDLTHKLVDIIRVNQRLKES--KEAGTPPLIVQDLVDLL 271

Query: 345  QQSVNVLFDGK-NAAGQRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
            Q  V   FD + +   Q    SG     + Q L+ KEG FR  L GKRV+++ R+VISPD
Sbjct: 272  QYHVTTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPD 331

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP 458
            P L + ++G+P   A +LT PE V+ WNV +L++ ++NG   +PGA + +        P 
Sbjct: 332  PNLTIADVGVPTDVAKKLTIPETVSQWNVERLKELVMNGPNTYPGANYIIR-------PD 384

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
              K+R+       T R AI      +D+   G +V RHL DGD+V+ NRQP+LH+ SIMA
Sbjct: 385  GVKIRLD----YVTDRKAI------ADSLAPGYIVERHLADGDIVIFNRQPSLHRMSIMA 434

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H V+VL   +T R+H A C  YNADFDGDEMN+H PQ E +RAEA  ++   +Q + P  
Sbjct: 435  HSVKVLP-YRTFRLHPAVCPPYNADFDGDEMNLHVPQSEEARAEATLLMRVQDQLISPRY 493

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            G P+   I+D I  A +LT+  T L +DEF  L    G           K GQR      
Sbjct: 494  GGPIIGGIRDFITGAFMLTRDGTTLTKDEFANLAMIGGYEGPLPEPAITKDGQR------ 547

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
                            L++G+Q+ +                    LP+DF          
Sbjct: 548  ----------------LYSGRQLFSLF------------------LPKDF---------- 563

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND 758
                         T+K +K   G+ K+VV                          I   +
Sbjct: 564  ---------NFIITSKWNKAAKGEGKDVV--------------------------IKNGE 588

Query: 759  LVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
            L+ GVIDKA         ++H + + YG+N A   L ++  +   ++   GFT G  DL 
Sbjct: 589  LISGVIDKASIGAEEPDSVLHRIAKDYGTNAARKFLDSILTMLKTYITHRGFTYGYSDLW 648

Query: 816  ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRG-GGDAAVAY 874
            +  +  +E  + +  + E   +V+    +  DG    P+          RG   + A+  
Sbjct: 649  LSPETRQEINDIIQKTYE---KVYELIQQYNDGTL--PL---------TRGLAAEEALEL 694

Query: 875  FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
            + +   S+       +       E        N   +M ++GA+GS +N  Q+++ LGQQ
Sbjct: 695  YVVNELSRARDRAGRTADRAFPDE--------NSGVIMASTGARGSTLNIGQMTAALGQQ 746

Query: 935  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
             + GKR+ +    + L  F P D  P A GF+   +  GL P E++FH M GREGLVDTA
Sbjct: 747  SIRGKRIQKGYHNRALSHFKPNDANPDAKGFVKSNYRDGLSPLEFFFHAMGGREGLVDTA 806

Query: 995  VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALA 1054
            V+T +SGY+QR LI  LE LKI YD +VRD  G+IVQ+ YGEDG+D       +K D   
Sbjct: 807  VRTQQSGYMQRRLINALEHLKIEYDQTVRDPHGNIVQYLYGEDGIDP------AKSDHGE 860

Query: 1055 ARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFA 1114
            A    R        D+G       +  E + K    +      Y   L   +K N EK  
Sbjct: 861  AVNISRLIEAESIVDEGR------KATEDVIKSIIAK------YAENLNPRMKANLEK-- 906

Query: 1115 DKFLSNEMAKQDFLKLVKHKFVL---SLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGR 1171
               L N ++K+   K++K    L   +LA+PGE VG++ +QS+GEP TQMTL TFH AG 
Sbjct: 907  -ALLENRLSKEGVEKVMKKVLDLIDRALAEPGEAVGVVTAQSIGEPGTQMTLRTFHFAGV 965

Query: 1172 GEMNVTLGIPRLQEILTIASKDIKTPVI 1199
             E NVTLG+PRL E++    K + TP +
Sbjct: 966  KERNVTLGLPRLIELVDARKKPV-TPTM 992



 Score = 49.3 bits (116), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREV 54
           C TCG     CPGHFGHI+L  PV +    + ++ LL   C  C+  K    E+
Sbjct: 60  CATCGNTSAKCPGHFGHIELAEPVLHIAFVDDIHKLLLISCRSCNRIKLEPEEL 113


>gi|348576170|ref|XP_003473860.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Cavia
            porcellus]
          Length = 1390

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 302/963 (31%), Positives = 458/963 (47%), Gaps = 160/963 (16%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            + M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  TQMKRFLKYGNREKMAQELKF-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  PAI KP  LWTGKQ+ + +L                  P D   
Sbjct: 571  -ILVGKDEKVKVRLPHPAILKPVTLWTGKQIFSVILR-----------------PSDDNP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK +++                    +++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGKGEDLC-------------------VNDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E  + ++   L+ + G               
Sbjct: 697  SIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGRLQQQPGCT------------- 743

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 744  ----AEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 791

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 792  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 851

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 852  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD--- 908

Query: 1044 TSFISKFDALAARERGRGRGRNKF---CDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIM 1100
             + +   D     +R     R  +    +       +  + E I KK +  L   ++++ 
Sbjct: 909  PAAMEGKDEPLEFKRVLDNIRAVYPCPSEPALSKNELALSTEAIMKK-NEFLCCQDSFLQ 967

Query: 1101 ELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVLSLA 1140
            E+   +K  +EK     DK+  N+    +                 FL+  + K++ +  
Sbjct: 968  EIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQLEKFLETCRDKYMRAQM 1027

Query: 1141 QPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
            +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+IT
Sbjct: 1028 EPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPIIT 1086

Query: 1201 CPL 1203
              L
Sbjct: 1087 AQL 1089



 Score = 48.5 bits (114), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   SR E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGVLQMICKTCCHILLSREE 121


>gi|239614510|gb|EEQ91497.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
            dermatitidis ER-3]
          Length = 1456

 Score =  408 bits (1049), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 307/980 (31%), Positives = 477/980 (48%), Gaps = 167/980 (17%)

Query: 275  KKAGHSIFFLGVVLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQANIYLANA-YVNQPD 332
            ++A   +F    +  PP+  R PS G ++   E   T  L  ++Q+NI L NA Y   P 
Sbjct: 260  EEARPEVFLWQYIPAPPVCIR-PSVGQEAASTEDDLTAKLGDIIQSNINLKNALYKGAPV 318

Query: 333  NAKVIVARWMNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYA 390
               +    +M LQ +V +  D  G   A       G CQ L+ K+G FR  L GKRV+++
Sbjct: 319  QTIIECWDYMQLQLAVYINSDVPGLQKADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFS 378

Query: 391  CRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDK 450
             R+VISPDP L V+E+ +P   A+ +TYPE+VT +N  KLR  I NG +  PGA +   K
Sbjct: 379  ARTVISPDPNLRVDEVAVPQLIAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPGANYVFKK 438

Query: 451  LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPT 510
                    N KM +  G            P   +++  EG +V RH++DGD+VL NRQP+
Sbjct: 439  ------SQNFKMNLKFG-----------NPNLVANDLEEGDIVERHIEDGDIVLFNRQPS 481

Query: 511  LHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNAN 570
            LHK SI++H  +V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA  ++   
Sbjct: 482  LHKLSILSHFAKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVK 540

Query: 571  NQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL-LYSSGVSSSGLGSFTGKP 629
            N    P NG+P+ S IQD I +A +L+ KD F +R  F  + LY                
Sbjct: 541  NNLATPKNGEPIISAIQDFITAAYMLSSKDVFYDRKAFTHICLY---------------- 584

Query: 630  GQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFF 689
               +L S +  ++ P  P++ KP+ LWTGKQ+   ++      RP               
Sbjct: 585  ---MLQSDTRFDLPP--PSVIKPQMLWTGKQIFNVLM------RP--------------- 618

Query: 690  KTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSE 749
                  +KQS    N             D + +  +  +G P           ++ + ++
Sbjct: 619  ------NKQSPVLVN------------LDAACRGFKAPKGTP-----------RDLDAND 649

Query: 750  EKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHG 806
              L I  ++++ GV+DK+         + + +   +G   A   ++ LSRL   +    G
Sbjct: 650  GWLCIRNSEVMCGVMDKSTIGSGKKDSVFYVMLRDFGPEVAAEGMNRLSRLSARWFTNMG 709

Query: 807  FTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG-AEIDPIKLKSEIEKAMR 865
            F+ G+ D+    DK  E K+H+                +ED  A+ D      E+ +  R
Sbjct: 710  FSIGITDVY-PGDKLLEEKSHI----------------VEDAYAQCD------EVIQLFR 746

Query: 866  GGGDAAVAYFDMKMTSQLNKHTSSSVINELLSE--GLLKPTGKNWIS--LMTTSGAKGSK 921
             G        D +MT +   +T S +++++  +   +       W S  +M TSG+KGS 
Sbjct: 747  TGKLEKAPGCDEQMTME---NTISGILSKVRQQAGAICIAELSRWNSPLIMATSGSKGSD 803

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            +N  Q+ + +GQQ + G+RV      +TLP F      P A GF+ + F +GL P E+ F
Sbjct: 804  INVAQMVALVGQQIIGGQRVQDGFQDRTLPHFPKHARQPPAKGFVRNSFFSGLTPTEFLF 863

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD- 1040
            H ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++  +IVQF YG+D +D 
Sbjct: 864  HAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSSNIVQFQYGDDKLDP 923

Query: 1041 ---------VHQTSFISKFDALAARERGRGRGRNK---FCD--------KGSHTFVMGRN 1080
                     VH     +  +        +G   ++    C         K +   ++G+N
Sbjct: 924  VDMEGRARPVHFDRTFTHCEVTTFDNSDKGLLPDEIITLCQNLLAPARAKLTRFDLLGKN 983

Query: 1081 QEMIYKKCSG--QLDASNAYIMELPDALKDNAEKFADKFLSNEM--------------AK 1124
             +   +   G  QL+++  ++  + D ++  AE+        E               A 
Sbjct: 984  LDYNDRSDHGIDQLESARDFLQSIEDYVRAKAERLRAIDGGTERRGRGIDHTAKVSTKAL 1043

Query: 1125 QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
              F+     K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   M++T G+PR++
Sbjct: 1044 TSFITACLTKYKRAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIK 1103

Query: 1185 EILTIASKDIKTPVITCPLL 1204
            EI+  ASK+I TPVITC L+
Sbjct: 1104 EIIN-ASKEISTPVITCELV 1122



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG    +C GHFGH+ LV+P ++   F  + ++L+ IC  C H      E    +R+
Sbjct: 78  CDTCGGALQVCSGHFGHVRLVLPAFHVGYFKRVISILQEICKECSHILLPENERRAFLRE 137

Query: 61  L 61
           L
Sbjct: 138 L 138


>gi|254569378|ref|XP_002491799.1| RNA polymerase I subunit [Komagataella pastoris GS115]
 gi|238031596|emb|CAY69519.1| RNA polymerase I subunit [Komagataella pastoris GS115]
 gi|328351700|emb|CCA38099.1| DNA-directed RNA polymerase I subunit A1 [Komagataella pastoris CBS
           7435]
          Length = 1640

 Score =  407 bits (1047), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 258/707 (36%), Positives = 361/707 (51%), Gaps = 98/707 (13%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG  +  CPGH GHI+L VP YNPL FN L   L+  C +C+ FK  + EV     K
Sbjct: 62  CGTCGLDERFCPGHQGHIELPVPCYNPLFFNQLCLFLRSACVYCNRFKLKQSEVNFFACK 121

Query: 61  LELIIKGDIIAAKSLD-------LDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVR--- 110
           L L+  G ++  + LD       L+        + +D  N    S+   R  +       
Sbjct: 122 LRLLQYGLMLECEELDGVSTGTKLEDIDVDDIDDGNDQGNGDDASLKRLRNEFVETAIAT 181

Query: 111 -----NLKPQEWTSLQFAEAKLALLQFLK---IETTKCGNCKAKNPRISKPTFGWIHMNG 162
                    Q  T+   A  + A+++      +   KC NC   +P   K     +  N 
Sbjct: 182 ALSEGRTTEQGMTTSTIANERKAIIRSFNSRLLSRPKCDNCGMYSPSFRKDGSIKLFENA 241

Query: 163 MPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQK 222
           +    I  N ++G      F   EE     A SD   P  +     FP  +  ++ ++  
Sbjct: 242 LTPKQISHNRVKGLTRETKFKQNEE----SAHSDDATPADN-----FPPIKTKSSFKY-- 290

Query: 223 GSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIF 282
                              +L ++V+ I+ KL+  E ++  ++ + +           +F
Sbjct: 291 -------------------ILSTEVRTIVRKLFITEKDVLKYVFNARPNS-NNIISADMF 330

Query: 283 FLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN----AYVNQPDNA---- 334
           F+  ++VPP +FRLPSK GD + E+ Q   LSK+L   + + +        Q D      
Sbjct: 331 FIQALIVPPTRFRLPSKLGDEIHENSQNEQLSKILTTALTIRDLNESIITVQKDQITAEE 390

Query: 335 -KVIVARWMN----LQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNY 389
            K+I  R MN    +Q  VN   D   +   +    GI Q LEKKEGLFR+ +MGKRVNY
Sbjct: 391 RKIIFNRLMNAFVTIQDDVNSFIDSTKSQNAQ-ANPGIKQALEKKEGLFRKHMMGKRVNY 449

Query: 390 ACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLD 449
           A RSVISPDP L  NEIG+PP FA +LTYPE VT +N   LR +IING ++ PGA    +
Sbjct: 450 AARSVISPDPMLETNEIGVPPVFAKKLTYPEPVTAYNAASLRQAIINGPDVWPGAIQIQN 509

Query: 450 K------LSTMRLPPNKKMRISIGRKLDT-SRGAIVQPGKDSDNEFEGKMVYRHLQDGDV 502
           +      L  M L    + R +I  +L T S GA V            K VYRH+++ D+
Sbjct: 510 EDGRHVSLIGMTL----EQRKAIANQLLTPSNGATVV----------NKKVYRHIKNNDI 555

Query: 503 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
           V++NRQPTLHK S+M H VRVL GEKTLR+HYAN   YNADFDGDEMN+H PQ+E +RAE
Sbjct: 556 VIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHLPQNENARAE 615

Query: 563 AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL 622
           AYN+ N ++QY+ P++G P+R LIQDHI +   LT KD+F  R+++ QL+Y         
Sbjct: 616 AYNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTNKDSFFTREKYQQLIY--------- 666

Query: 623 GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
           G    + G  V   +S  + LP  P + KP PLWTGKQ+IT +L +I
Sbjct: 667 GCLRPEDGHTV---KSRIQTLP--PTVLKPVPLWTGKQIITTILLNI 708



 Score =  370 bits (950), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 210/484 (43%), Positives = 291/484 (60%), Gaps = 32/484 (6%)

Query: 749  EEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHG 806
            E++++I   +L+ G++DK+Q+  +++GL+H++ E+YG + +   LS L RLFT ++ M G
Sbjct: 735  EDRVIIRNGELLVGILDKSQYGASNFGLIHSLHEVYGPSVSSKALSVLGRLFTNYIMMIG 794

Query: 807  FTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRG 866
            FTCG+DDL +  +  ++R   L  S ++G+    E   L    +    +    +E+ +R 
Sbjct: 795  FTCGMDDLRLTAEGNKQRSEILQESVDLGRVAAAEVTNLPKDTKPGDKEFMRRLEEILRD 854

Query: 867  GGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQ 926
             G   +   D    S++N  TS  V++  + EG +K   +N +  M  SGAKGS VN  Q
Sbjct: 855  DGKLGI--LDAVTQSKVNVVTSK-VVSSCIPEGTMKRFPENSMQAMALSGAKGSNVNVSQ 911

Query: 927  ISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAG 986
            I   LGQQ LEG+RVP MVSGKTLPSF P+D   RAGG+I  RF +G+RPQEYYFHCMAG
Sbjct: 912  IMCLLGQQALEGRRVPVMVSGKTLPSFKPFDTDARAGGYIKGRFYSGIRPQEYYFHCMAG 971

Query: 987  REGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            REGL+DTAVKTSRSGYLQRCL K LE   I YD SVRD DGS++QF YG D VDV + S 
Sbjct: 972  REGLIDTAVKTSRSGYLQRCLTKQLEGAHIGYDNSVRDGDGSLIQFLYGGDSVDVVKESH 1031

Query: 1047 ISKF-----------------------DALAARERGRGRGRN--KFCDKGSHTFVMGRNQ 1081
            + KF                       DA +A +  +   +N  K  +K  + F   +  
Sbjct: 1032 MYKFQFCAENYDSLLERYNPGQLVHNLDAESALKYAKKCRKNLKKQSNKMHYQF-EDKYM 1090

Query: 1082 EMIYK-KCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLA 1140
             +I K   +  L A + +  +  D   DN  +  DK     + ++ F  L++ K++ SL 
Sbjct: 1091 PVINKFNPAKYLGAVSEHFQDALDNFIDNNPQLFDKKSKRSLTEKKFRALMQLKYMRSLI 1150

Query: 1141 QPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
             PGE VG++ASQSVGEPSTQMTLNTFH AG G  NVTLGIPR++EI+  AS +IKTP + 
Sbjct: 1151 NPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASLNIKTPQMM 1210

Query: 1201 CPLL 1204
             P+L
Sbjct: 1211 LPIL 1214


>gi|73953679|ref|XP_536399.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Canis lupus
            familiaris]
          Length = 1390

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 304/965 (31%), Positives = 461/965 (47%), Gaps = 164/965 (16%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            + M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  TQMKRFLKYGNREKMAQELKY-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ +V K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLAKV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQ+ + +L                  P D   
Sbjct: 571  -ILVGKDEKIKVHLPPPTILKPVTLWTGKQIFSVILR-----------------PSDDNP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK +++                    +++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGKGEDLC-------------------VNDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 697  SIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQQ 739

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 740  PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 791

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 792  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 851

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 852  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD--P 909

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ-----EMIYKKCSGQLDASNAY 1098
             +   K + L   E  R     K          + +N+     E I KK +  L   +++
Sbjct: 910  AAMEGKDEPL---EFKRVLDNIKAVFPCQSEPALSKNELVLTTESIMKK-TEFLCCQDSF 965

Query: 1099 IMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVLS 1138
            + E+ + +K  +EK     DK+  N+    +                 FL+  + K++ +
Sbjct: 966  LQEIKNFVKGISEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMRA 1025

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+
Sbjct: 1026 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPI 1084

Query: 1199 ITCPL 1203
            IT  L
Sbjct: 1085 ITAQL 1089



 Score = 47.4 bits (111), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121


>gi|296220277|ref|XP_002756253.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 isoform 1
            [Callithrix jacchus]
          Length = 1390

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 308/965 (31%), Positives = 459/965 (47%), Gaps = 164/965 (16%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            + M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  TQMKRFLKYGNREKMAQELKY-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQ+ + +L                  P D   
Sbjct: 571  -ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILR-----------------PSDDNP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK         GE+  A          ++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGK---------GEDLCA----------NDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 697  SIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQQ 739

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 740  PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 791

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 792  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 851

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 852  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD--P 909

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ-----EMIYKKCSGQLDASNAY 1098
             +   K + L   E  R     K          + +N+     E I  K S  L   +++
Sbjct: 910  AAMEGKDEPL---EFKRVLDNIKAVFPCPSEPALSKNELILTTESIMNK-SEFLCCQDSF 965

Query: 1099 IMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVLS 1138
            + E+   +K  +EK     DK+  N+    +                 FL+  + K++ +
Sbjct: 966  LQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQVEKFLETCRDKYMRA 1025

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+
Sbjct: 1026 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPI 1084

Query: 1199 ITCPL 1203
            IT  L
Sbjct: 1085 ITAQL 1089



 Score = 47.4 bits (111), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121


>gi|410975432|ref|XP_003994136.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Felis catus]
          Length = 1390

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 304/965 (31%), Positives = 460/965 (47%), Gaps = 164/965 (16%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            + M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  TQMKRFLKYGNREKMAQELKY-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ +V K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLAKV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQ+ + +L                  P D   
Sbjct: 571  -ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILR-----------------PSDDNP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK +++                    +++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGKGEDLC-------------------VNDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 697  SIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQQ 739

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 740  PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 791

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 792  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 851

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 852  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD--P 909

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ-----EMIYKKCSGQLDASNAY 1098
             +   K + L   E  R     K          + +N+     E I KK +  L   +++
Sbjct: 910  AAMEGKDEPL---EFKRVLDNIKAVFPCQSEPALSKNELVLTTESIMKK-TEFLCCQDSF 965

Query: 1099 IMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVLS 1138
            + E+   +K  +EK     DK+  N+    +                 FL+  + K++ +
Sbjct: 966  LQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMRA 1025

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+
Sbjct: 1026 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPI 1084

Query: 1199 ITCPL 1203
            IT  L
Sbjct: 1085 ITAQL 1089



 Score = 47.4 bits (111), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121


>gi|195132669|ref|XP_002010765.1| GI21717 [Drosophila mojavensis]
 gi|193907553|gb|EDW06420.1| GI21717 [Drosophila mojavensis]
          Length = 1382

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 351/1254 (27%), Positives = 549/1254 (43%), Gaps = 289/1254 (23%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C+TCGQ    C GHFG++DL +PV++   F     +L+ IC             + C R 
Sbjct: 67   CETCGQGLNECIGHFGYLDLALPVFHIGHFRSTINILQMIC-------------KTCAR- 112

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
              +++K                   PED  V  K    +  P  +Y   + L  Q     
Sbjct: 113  --VMLK-------------------PEDRAVFEKK---LHNPNFSYLGKKALHSQ----- 143

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGE 180
              A+AK         + TKC +C A N  + K   G + +   P+   + +     ++ E
Sbjct: 144  MLAKAK---------KVTKCPHCNAANGGVKKGP-GLLKILHDPYKGRKKDATFTSHMEE 193

Query: 181  TFSGGEEEKDLGAS-SDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFS 239
                 E  +DL  + S+  A E                                      
Sbjct: 194  MLRSTELNRDLNLTLSNYSAAEE------------------------------------- 216

Query: 240  GPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS- 298
              L P  V D+ E++ +++  L    S       G    H I  +  V VPP   R PS 
Sbjct: 217  --LTPLMVLDLFEQIPQSDIALLGMCSR------GAHPKHLI--VTRVFVPPACIR-PSV 265

Query: 299  ----KGG----DSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNV 350
                K G    D  M+  + +L++ V+Q ++             ++I   W  LQ  V +
Sbjct: 266  LSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGG-------KIELIHEDWDFLQLHVAL 318

Query: 351  LFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNE 405
             F  + +    +MA      GI Q L+ K+G FR  L GKRV+++ R+VISPDP L +N+
Sbjct: 319  YFHSEISGIPLNMAPKKTTRGIVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLMINQ 378

Query: 406  IGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRIS 465
            +G+P   A  LTYPERV P N+ +++  + NG  +HPGA +   + S+       K  ++
Sbjct: 379  VGVPVRVAKILTYPERVNPANIRQMKQLVRNGPAMHPGANYVQQRGSSF------KKYLA 432

Query: 466  IGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLK 525
             G     +R  + Q  K  D      +V RHL+D D+VL NRQP+LHK SIM H  +V +
Sbjct: 433  YG-----NREKVAQELKCGD------IVERHLRDDDIVLFNRQPSLHKMSIMCHRAKV-Q 480

Query: 526  GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSL 585
             ++T R +   C+ YNADFDGDEMN+H PQ E +RAEA  ++   +  V P NG+ L + 
Sbjct: 481  PQRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAA 540

Query: 586  IQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL 645
             QD I    LLT+K+ FL ++E  QL      +          P                
Sbjct: 541  TQDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMRIQMPP---------------- 584

Query: 646  LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKND 705
             PAIWKP  LWTGKQ+ + ++                  P D    R N     ++ +N 
Sbjct: 585  -PAIWKPRRLWTGKQLFSLLMR-----------------PNDDSIVRLN---MVNKGRNY 623

Query: 706  KGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVID 765
             G +                                     +++  + I  ++L+ G +D
Sbjct: 624  SGNMDLC----------------------------------VNDSWIHIRNSELMCGTMD 649

Query: 766  KAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL----ILK 818
            KA         + + +   +G   A   +  L+R+ + F+Q  GF+ G+ D+     +L+
Sbjct: 650  KATMGSGTKQCIFYLLLRDFGEAFATKAMWRLARIASYFIQNRGFSFGISDVTPSARLLQ 709

Query: 819  DKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMK 878
             K+   +       E  +++    L+ + G   +       +E  M            ++
Sbjct: 710  HKQVLLERGYAKCNEYIEKLKAGTLQCQPGCTPE-----ETLEAVM------------LR 752

Query: 879  MTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEG 938
              S + +  + +   E      L PT  N   +M  SG+KGS +N  Q+ + +GQQ + G
Sbjct: 753  ELSGIREQAAKTCFAE------LHPT--NSALIMALSGSKGSNINISQMIACVGQQAISG 804

Query: 939  KRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTS 998
            KRVP     + LP F      P A GF+ + F +GL P E++FH MAGREGLVDTAVKT+
Sbjct: 805  KRVPNGFENRALPHFDRHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTA 864

Query: 999  RSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARER 1058
             +GYLQR L+K LE L + YD +VR+A   +V   YG DG+           D ++   R
Sbjct: 865  ETGYLQRRLVKCLEDLVVHYDGTVRNAVNEMVDTIYGGDGL-----------DPVSMETR 913

Query: 1059 GRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAE------- 1111
             +    N   D        G  Q +     +G++ ++   +++LP+  +  A+       
Sbjct: 914  NKPVDLNHQYDNLRAQLPCGDQQPLE----AGEILSTVESLLQLPEFAEARADFKRDVTS 969

Query: 1112 ----------KFADKFLSN--EMAKQ----------DFLKLVKHKFVLSLAQPGEPVGLL 1149
                      K  +K+ +   ++ KQ          +FL+ +  ++  ++ +PG  VG +
Sbjct: 970  HLNTVTKRISKLQEKYGAEHKDLCKQIECISREQLLEFLRRINDRYNRAVTEPGTAVGAI 1029

Query: 1150 ASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            A+QS+GEP TQMTL TFH AG   MN+T G+PR+ EI+  A+K I TP+IT  L
Sbjct: 1030 AAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIIN-ATKTISTPIITAEL 1082


>gi|194894264|ref|XP_001978037.1| GG17910 [Drosophila erecta]
 gi|190649686|gb|EDV46964.1| GG17910 [Drosophila erecta]
          Length = 1383

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 361/1243 (29%), Positives = 546/1243 (43%), Gaps = 268/1243 (21%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C+TCGQ    C GHFG++DL +PV                 F   HF+++       +  
Sbjct: 67   CETCGQGLNECIGHFGYLDLALPV-----------------FHIGHFRST-------INI 102

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
            L++I K    A   L          PED  +  K    +  P  +Y   + L  Q     
Sbjct: 103  LQMICK--TCAHVML---------KPEDRQLYEKK---LHNPNFSYLGKKALHVQ----- 143

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGE 180
              A+AK         + TKC +C + N  + K   G + +   P+   + + +   ++ E
Sbjct: 144  MLAKAK---------KVTKCPHCGSPNGGVKKGP-GLLKILHDPYKGRKVDSLFTNHINE 193

Query: 181  TFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSG 240
                 E  +DL              N T  G   TA                        
Sbjct: 194  LLRSTEANRDL--------------NSTL-GNYSTAEE---------------------- 216

Query: 241  PLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS-- 298
             L P  V D+ E++ + +  L    S          A      +  V VPP   R PS  
Sbjct: 217  -LTPLMVLDLFEQIPQRDVALLGMCS--------HDAHPKHLIVTRVFVPPACIR-PSVL 266

Query: 299  ---KGG----DSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVL 351
               K G    D  M+  + +L++ V+Q ++             ++I   W  LQ  V + 
Sbjct: 267  SEVKAGTTEDDLTMKQSEILLINDVIQRHMATGG-------KIELIHEDWDFLQLHVALY 319

Query: 352  FDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEI 406
            F  + +    +MA      GI Q L+ K+G FR  L GKRV+++ R+VISPDP L +N++
Sbjct: 320  FHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQV 379

Query: 407  GIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISI 466
            G+P   A  LTYPERV P N+  +R+ + NG  +HPGA +   + S+       K  ++ 
Sbjct: 380  GVPVRVAKILTYPERVNPANMRHMRELVRNGPSMHPGANYVQQRGSSF------KKYLAY 433

Query: 467  GRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKG 526
            G     +R  + Q  K  D      +V RHL+DGD+VL NRQP+LHK SIM H  +V + 
Sbjct: 434  G-----NREKVAQELKCGD------IVERHLRDGDIVLFNRQPSLHKMSIMCHRAKV-QP 481

Query: 527  EKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLI 586
            ++T R +   C+ YNADFDGDEMN+H PQ E +RAEA  ++   +  V P NG+ L +  
Sbjct: 482  QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAAT 541

Query: 587  QDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLL 646
            QD I    LLT+K+ FL ++E  QL             F       + I       LP  
Sbjct: 542  QDFITGGYLLTQKEVFLTKEEAMQLA----------ACFLSNEDSTMHIK------LPP- 584

Query: 647  PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDK 706
            PA+ KP  LWTGKQ+ + ++                  P D    R N   +      + 
Sbjct: 585  PALLKPRRLWTGKQMFSLLMR-----------------PNDDSHVRLNMVNKGRNYTRNM 627

Query: 707  GKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
               S  + +H                                     I  ++L+ GV+DK
Sbjct: 628  DLCSNDSWIH-------------------------------------IRNSELMCGVMDK 650

Query: 767  AQFAD-------YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL---- 815
            A           Y L+    EL+ +      +  L+R+ + FLQ  GF+ G+ D+     
Sbjct: 651  ATMGSGTKQCIFYLLLRDFGELHATKA----MWRLARIASYFLQNRGFSFGISDVTPSKK 706

Query: 816  ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYF 875
            +L+ KE    N      E    +    L+ + G   +       +E  M           
Sbjct: 707  LLQHKELLLNNGYAKCNEYIDMLKAGTLQCQPGCTPE-----ETLESVM----------- 750

Query: 876  DMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQE 935
             ++  S + +  + +   EL       PT  N   +M  SG+KGS +N  Q+ + +GQQ 
Sbjct: 751  -LRELSAIREQAAKTCFAEL------HPT--NSALIMALSGSKGSNINISQMIACVGQQA 801

Query: 936  LEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAV 995
            + GKRVP     + LP F      P A GF+ + F +GL P E++FH MAGREGLVDTAV
Sbjct: 802  ISGKRVPNGFENRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAV 861

Query: 996  KTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV-------HQTSFIS 1048
            KT+ +GYLQR L+K LE L + YD +VR+A   +V   YG DG+D             + 
Sbjct: 862  KTAETGYLQRRLVKCLEDLVVHYDGTVRNAVNEMVDTIYGGDGLDPVSMETRNKPVDLVH 921

Query: 1049 KFDALAARERGRGRGRNKFCDKGSHTF-VMGRNQEMIYKKCSGQLDASNAY--IMELPDA 1105
            ++D L A +  +G+ R    ++ S     + +  E    +   +LD  N    + +    
Sbjct: 922  QYDNLRA-QHPQGKDRPLLAEELSEALETLLKTPEFSEARDDFKLDVRNHINTVSKRIGQ 980

Query: 1106 LKDNAEKFAD-----KFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQ 1160
            L+   EK+ +     + L+ E   Q F++ +  ++  ++ +PG  VG +A+QS+GEP TQ
Sbjct: 981  LQKRYEKYINLCHQIECLTAEQLLQ-FVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQ 1039

Query: 1161 MTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            MTL TFH AG   MN+T G+PR+ EI+  A+K I TP+IT  L
Sbjct: 1040 MTLKTFHFAGVASMNITQGVPRIVEIIN-ATKTISTPIITAEL 1081


>gi|395820429|ref|XP_003783569.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Otolemur
            garnettii]
          Length = 1390

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 301/971 (30%), Positives = 456/971 (46%), Gaps = 176/971 (18%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            + M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  TQMKRFLKYGNREKMAQELKY-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQ+ + +L                  P D   
Sbjct: 571  -ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILR-----------------PSDDNP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK +++                    +++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGKGEDLC-------------------VNDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDL-----LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEK 862
            + G+ D+     L+    E     +    E      ++EAL               ++++
Sbjct: 697  SIGIGDVTPGQGLLTAKYELLNAGYKKCDE------YIEALN------------TGKLQQ 738

Query: 863  AMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV 922
                  +  +    +K  S +  H  S+ + EL           N    M   G+KGS +
Sbjct: 739  QPGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFI 790

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH
Sbjct: 791  NISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFH 850

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD-- 1040
             MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D  
Sbjct: 851  TMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPA 910

Query: 1041 --------VHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQL 1092
                    +     +    A+      R   +N+               E I KK +  L
Sbjct: 911  AMEGKDEPLEFKRVLDNIKAVFPCPSERALSKNELI----------LTTESIMKK-NEFL 959

Query: 1093 DASNAYIMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVK 1132
               ++++ E+   +K  +EK     DK+  N+    +                 FL+  +
Sbjct: 960  CCQDSFLQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQVEKFLETCR 1019

Query: 1133 HKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASK 1192
             K++ +  +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK
Sbjct: 1020 DKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASK 1078

Query: 1193 DIKTPVITCPL 1203
             I TP+IT  L
Sbjct: 1079 AISTPIITAQL 1089



 Score = 47.4 bits (111), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121


>gi|344274310|ref|XP_003408960.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit RPC1-like [Loxodonta africana]
          Length = 1392

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 303/966 (31%), Positives = 459/966 (47%), Gaps = 166/966 (17%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANIHFLRKLVQNGPEVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            + M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  TQMKRFLKYGNREKMAQELKY-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQ+ + +L                  P D   
Sbjct: 571  -ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILR-----------------PSDDNP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK +++                    +++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGKGEDLC-------------------VNDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDL-----LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEK 862
            + G+ D+     L+    E     +    E      ++EAL               ++++
Sbjct: 697  SIGIGDVTPGQGLLTAKYELLNAGYKKCDE------YIEALN------------TGKLQQ 738

Query: 863  AMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV 922
                  +  +    +K  S +  H  S+ + EL           N   +M   G+KGS +
Sbjct: 739  QPGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLIMALCGSKGSFI 790

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH
Sbjct: 791  NISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFH 850

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVH 1042
             MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D  
Sbjct: 851  TMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD-- 908

Query: 1043 QTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ-----EMIYKKCSGQLDASNA 1097
              +   K + L   E  R     K          + RN+     E I +K   +    ++
Sbjct: 909  PAAMEGKDEPL---EFKRVLDNIKAVFPCPSEPALSRNELTLTMESIMQKSEFRC-CQDS 964

Query: 1098 YIMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVL 1137
            ++ E+   +K  +EK     DK+  N+    +                 FL+  + K++ 
Sbjct: 965  FLQEIKKFVKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMR 1024

Query: 1138 SLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTP 1197
            +  +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP
Sbjct: 1025 AQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTP 1083

Query: 1198 VITCPL 1203
            +IT  L
Sbjct: 1084 IITAQL 1089



 Score = 46.6 bits (109), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G++DL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLADCLGHYGYVDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121


>gi|291404119|ref|XP_002718445.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A, 155kDa
            [Oryctolagus cuniculus]
          Length = 1390

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 304/966 (31%), Positives = 460/966 (47%), Gaps = 166/966 (17%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
              M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  MHMKRFLKYGNREKMAQELKY-----------------GDVVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQ+ + +L                  P D   
Sbjct: 571  -ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILR-----------------PSDDSP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK +++                    +++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGKGEDLC-------------------VNDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 697  SIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQQ 739

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 740  PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 791

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 792  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 851

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 852  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD--- 908

Query: 1044 TSFISKFDALAARERGRGRGRNKF-CDKGSHTFVMGRNQ-----EMIYKKCSGQLDASNA 1097
             + +   D     +R     R  F C        + +N+     E I KK +  L   ++
Sbjct: 909  PAAMEGKDEPLEFKRVLDNIRAVFPCQNEP---ALSKNELILTSEAIMKK-NEFLCCQDS 964

Query: 1098 YIMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVL 1137
            ++ E+   +K  +E+     DK+  N+    +                 FL+  + K++ 
Sbjct: 965  FLQEIKKFIKGVSERIKKTRDKYGINDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMR 1024

Query: 1138 SLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTP 1197
            +  +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP
Sbjct: 1025 AQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTP 1083

Query: 1198 VITCPL 1203
            +IT  L
Sbjct: 1084 IITAQL 1089



 Score = 45.8 bits (107), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S  E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHILLSPEE 121


>gi|409049783|gb|EKM59260.1| hypothetical protein PHACADRAFT_169748 [Phanerochaete carnosa
           HHB-10118-sp]
          Length = 1712

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 269/751 (35%), Positives = 391/751 (52%), Gaps = 120/751 (15%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    F CPGHFGHI+L  PV++PL    +Y +L+  C FCH FKA+   + K   K
Sbjct: 63  CATCRLSYFTCPGHFGHIELPAPVFHPLFMGKMYDVLRGTCLFCHKFKANPYMICKFQGK 122

Query: 61  LELIIKGDIIAAKSLD-LDLPSESSNPEDSDVSNKSSCSMVTPR--------GNYDNVRN 111
           L L+  G ++ AK LD L + SE     + D  ++ + +    +         +     +
Sbjct: 123 LRLLEHGLLLPAKMLDDLRVTSEKKGKLEGDEDDEPTETFENYQMRVNAFVAAHLTGASS 182

Query: 112 LKPQEWTSLQ-FAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGW------------I 158
            K  ++   Q + E K  + +FLK   TK    K +NP      + +            +
Sbjct: 183 SKRDDYKDTQVYQERKAVMHEFLKATITK----KCQNPSCGAHAYTFRKEGHTKIIEYDL 238

Query: 159 HMNGMPHADI----RANLI------RGCNLGET--FSGGEEEKDLGASSDVDAPETHSFN 206
                   DI    R+N++      RG     +  +S   E+ D G  S+ +  +  S +
Sbjct: 239 SAKQKARHDIIDLKRSNILDAERASRGVKPAHSPSYSRTNEQGDSGTDSEAEGEDVWSED 298

Query: 207 GTFPGTQDTAARRHQ---KGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCS 263
                 Q+ A   HQ     SG V +   + + + +    P + +  + +L+E E  +CS
Sbjct: 299 EE----QNPAVTHHQLPKSASGKVKTSRGRNERVMA----PIECRAHLRQLFEKESVMCS 350

Query: 264 FISDMQQQGFGKK-------------AGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQT 310
            +       FG+              A   +FFL V+ V P +FR P+K  D + EHPQ 
Sbjct: 351 LL-------FGRHGPFAPLTPHRLSLASADMFFLEVLPVAPTRFRPPAKMNDMLFEHPQN 403

Query: 311 VLLSKVLQAN---------IYLANAYVNQPDNA------KVIVARWMNLQQSVNVLFDG- 354
            LL++VL A+         ++ A+   +  D A      + ++   + LQ  VN   D  
Sbjct: 404 ELLTRVLTASYRLRELSQSLHAASEKGSSADEATKDTLLQQLLDNLIQLQVHVNSFIDSS 463

Query: 355 KNAAGQRD---MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
           KN    R      SG+ QLLEKKEGLFR+ +MGKRVNYA RSVISPD  +  NEIGIPP 
Sbjct: 464 KNPQPVRQGKLPPSGVKQLLEKKEGLFRKHMMGKRVNYAARSVISPDVNIEPNEIGIPPV 523

Query: 412 FALRLTYPERVTPWNVVKLRDSIINGAEIHPGAT---------HYLDKLSTMRLPPNKKM 462
           FA +LT+PE VTP N  ++R  +I G   +PGAT          +LD LS        + 
Sbjct: 524 FARKLTFPEPVTPINFHEMRALVIAGPRSYPGATMVEYEDGHLQFLDNLSV-------EQ 576

Query: 463 RISIGRKLDTSR---GAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAH 519
           R ++  +L T +       + G  +      K VYRHL+DGD +++NRQPTLHKPS+M H
Sbjct: 577 RTAVANQLLTPQEGDHGSSRSGLRTRTAAVNKKVYRHLRDGDQLILNRQPTLHKPSMMVH 636

Query: 520 VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNG 579
             +VL+GEKT+RMHYANC++YNADFDGDEMN+HFPQ++V+RAEA  I N +NQY+ P++G
Sbjct: 637 KAKVLQGEKTIRMHYANCNSYNADFDGDEMNIHFPQNQVARAEAMMIANTDNQYLVPTSG 696

Query: 580 DPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSE 639
            PLR LIQDH+V+   +T +DTF +R+E+ QLLY +       G  +G+           
Sbjct: 697 KPLRGLIQDHVVAGVWMTAQDTFFSREEYFQLLYGALRPEGSSGHHSGR----------- 745

Query: 640 QEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
             ++ L P IWKP+PLWTGKQ+I+ V+ +IT
Sbjct: 746 --LVTLSPTIWKPKPLWTGKQIISTVMLNIT 774



 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 229/493 (46%), Positives = 296/493 (60%), Gaps = 39/493 (7%)

Query: 745  KELSEEKLLIYKNDLVRGVIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFL 802
            K+  E+ ++I   +L+ GV+DK+ F   D+GLVH+V ELYG++ AGTLL  LSRLFT FL
Sbjct: 796  KDSKEDTVIIVDGELLCGVLDKSAFGATDFGLVHSVYELYGADVAGTLLGVLSRLFTKFL 855

Query: 803  QMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL----ELEDGAEIDPIKLKS 858
            Q   FTC VDDL +  +    RK  +    ++G    +E       L D  +  P +L++
Sbjct: 856  QHRAFTCRVDDLALTPEGSAMRKELVRKGADLGTEGAIENFPSLASLPDNEK--PAQLRA 913

Query: 859  EIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAK 918
             +E  +R   D  +A  DM + S+L K T S + + ++  GLL+    N +  MT SGAK
Sbjct: 914  LLEDVLRD--DNKMAGLDMTVKSKLAKLTKS-IADAVMPHGLLRQFPHNHMQAMTQSGAK 970

Query: 919  GSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQE 978
            GS VN QQIS  LGQQELEG+RVP MVSGKTLPSF P++    AGG++  RFLTG++PQE
Sbjct: 971  GSAVNAQQISCALGQQELEGRRVPVMVSGKTLPSFKPFETKAIAGGYVASRFLTGVKPQE 1030

Query: 979  YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDG 1038
            ++FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE ++  YD SVR +DGS+ QF YG DG
Sbjct: 1031 FFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIRAHYDNSVRGSDGSLYQFHYGGDG 1090

Query: 1039 VDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQ----LDA 1094
            +DV +   + +FD  A  E       NK+  +     +  +  E   KK        LD 
Sbjct: 1091 MDVTRQKHLYQFDFFARNEES---AVNKYKPRDVLPHIDQKLAEEHMKKLLKSKRKGLDP 1147

Query: 1095 SNAYIMELPDA--LKDNAEKFADKF-----LSNEMAKQD--------------FLKLVKH 1133
                +     A  L   +EKFA+K      L  E  KQD              F  L+  
Sbjct: 1148 GEPTLSTYNPARFLGSTSEKFAEKVEEYAKLLKEKTKQDANIKMRKPYIHPRHFKLLMNV 1207

Query: 1134 KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKD 1193
            K++ SL  PGE VGLLASQ VGEPSTQMTLNTFH AG G  NVTLGIPRL+EI+  AS+ 
Sbjct: 1208 KYMRSLVDPGEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASRK 1267

Query: 1194 IKTPVITCPLLVG 1206
             KTP +T  +  G
Sbjct: 1268 PKTPSMTMAVRKG 1280


>gi|296827068|ref|XP_002851111.1| DNA-directed RNA polymerase III largest subunit [Arthroderma otae CBS
            113480]
 gi|238838665|gb|EEQ28327.1| DNA-directed RNA polymerase III largest subunit [Arthroderma otae CBS
            113480]
          Length = 1443

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 310/1025 (30%), Positives = 486/1025 (47%), Gaps = 202/1025 (19%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            L P  V  +  ++ + + EL S   D        +A    F    +  PP+  R PS G 
Sbjct: 234  LNPLRVLKLFRRISDEDCELLSLNVD--------EARPEYFLWQFIPAPPVPIR-PSVGQ 284

Query: 302  D-SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARW--MNLQQSVNVLFD--GKN 356
            + +  E   T  L  ++Q+N+ L  A +++    + I+  W  M LQ +V +  D  G  
Sbjct: 285  EGASTEDDLTAKLGDIVQSNLNLKMA-LDKGAPVQTIIECWDYMQLQIAVYINSDIPGLQ 343

Query: 357  AAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRL 416
                +    G+CQ L+ K+G FR  L GKRV+++ R+VISPDP L ++E+ +P   A+ +
Sbjct: 344  NTDSKKSIRGLCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNM 403

Query: 417  TYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGA 476
            TYPERVT +N  KLR  + NG +  PGA + + + ++ RL         I  +L      
Sbjct: 404  TYPERVTRYNKEKLRQCVRNGTKTWPGANYLIKQGNSFRLFLKYGNLNMIANQLS----- 458

Query: 477  IVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYAN 536
                        EG +V RHL+DGD+VL NRQP+LHK SI++H V+V +  +T R++   
Sbjct: 459  ------------EGDIVERHLEDGDIVLFNRQPSLHKLSILSHFVKV-RPHRTFRLNECV 505

Query: 537  CSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALL 596
            C+ YNADFDGDEMN+H PQ E +R+EA  ++   N    P NG P+ + IQD I +A LL
Sbjct: 506  CNPYNADFDGDEMNLHVPQTEEARSEAMELMGVKNNLATPKNGAPIIAAIQDFITAAYLL 565

Query: 597  TKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLW 656
            + KD F +R  F Q+  S                  +L S +  E+ P  PA  KP+ LW
Sbjct: 566  SSKDNFFDRKTFTQICLS------------------MLDSSTRLELPP--PATLKPQMLW 605

Query: 657  TGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMH 716
            TGKQV + ++      RP                   N D                 K++
Sbjct: 606  TGKQVFSVLM------RP-------------------NKDSPV--------------KVN 626

Query: 717  KDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEK--LLIYKNDLVRGVIDKAQFAD--- 771
             D + ++ + V+ +P             ++L E    L I  ++++ GV DK+   D   
Sbjct: 627  LDAACRQFKRVKDQP-------------RDLCENDGWLCIRNSEMLCGVADKSTIGDGRK 673

Query: 772  YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDD------LLILKDKERERK 825
              +   +Q  +G   A   ++ LS+L   +L   GF+ G+ D      L+ LKD      
Sbjct: 674  DNIFFVIQRDFGPAAAAEAMNRLSKLSARWLTNKGFSIGITDVYPGTGLVKLKDT----- 728

Query: 826  NHLHGSEEIGKRVHLEALELEDGA--EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQL 883
                               L D A  + D + +K+  EK  +G  D+     + ++T  L
Sbjct: 729  -------------------LIDNAFKQCDDLIIKASKEKPQKGKSDSRQTA-ENEITGIL 768

Query: 884  NK---HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKR 940
            NK         I+EL        +  N   +M   G+KGS +N  Q+ + +GQQ +E  R
Sbjct: 769  NKLRQQAGEYCISEL--------SKHNAPLIMAKCGSKGSDINVSQMVAVVGQQSIENSR 820

Query: 941  VPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRS 1000
            V +    +TLP F        A GF+ + F +GL P E+ FH M+GREGL+DTAVKT+ +
Sbjct: 821  VSKGFQDRTLPHFPRHSQHALAKGFVRNSFFSGLTPTEFLFHAMSGREGLIDTAVKTAET 880

Query: 1001 GYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISK---FDALAARE 1057
            GY+ R L+K+LE L   YD +VRD+   ++QF YG+D +D       +K   F+      
Sbjct: 881  GYMSRRLMKSLEDLSTRYDNTVRDSSSFVIQFQYGDDQLDPVNMEASAKPVHFERTFTHA 940

Query: 1058 RGRGRGRNKFCDKG-SHTFVMGRNQEMIYKK----------------------CSGQLDA 1094
                  RN   D+G S   +M   +E++  +                       + Q ++
Sbjct: 941  ESTTYDRN---DRGLSADEIMALCEELLAPERKKLARFDLLGNTLPYTAENDFATDQWES 997

Query: 1095 SNAYIMELPDALKDNAEKFADKFLSNEMAK----------------QDFLKLVKHKFVLS 1138
            +  ++  + + + + AE+   + +  E +K                + F+     K++ +
Sbjct: 998  NRDFLSSIEEFVANKAEQL--RSIDGEESKGQMAFTHTGKLSARTLKAFIASCLDKYMRA 1055

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  +G + +QS+GEP TQMTL TFH AG   M++T G+PR++EI+  ASK+I TP+
Sbjct: 1056 HVEPGHSIGAIGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN-ASKEISTPI 1114

Query: 1199 ITCPL 1203
            ITC L
Sbjct: 1115 ITCEL 1119


>gi|225554972|gb|EEH03266.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
            capsulatus G186AR]
          Length = 1456

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 310/980 (31%), Positives = 475/980 (48%), Gaps = 167/980 (17%)

Query: 275  KKAGHSIFFLGVVLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQANIYLANAYVN-QPD 332
            ++A   +F    V  PP+  R PS G ++   E   T  L  ++Q+NI L NA +   P 
Sbjct: 260  EEARPEVFLWQYVPAPPVCIR-PSVGQEAASTEDDLTAKLGDIIQSNINLKNALIKGAPV 318

Query: 333  NAKVIVARWMNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYA 390
               +    +M LQ +V +  D  G   A       G CQ L+ K+G FR  L GKRV+++
Sbjct: 319  QTIIECWDYMQLQLAVYINSDVPGLQKADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFS 378

Query: 391  CRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDK 450
             R+VISPDP L VNE+ +P   A+ +TYPE+VT +N  KLR  I NG +  PGA + L K
Sbjct: 379  GRTVISPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPGANYVLKK 438

Query: 451  LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPT 510
                    N KM +  G            P   ++   EG +V RH++DGD+VL NRQP+
Sbjct: 439  ------SQNFKMNLKFG-----------NPNLVANELEEGDIVERHIEDGDIVLFNRQPS 481

Query: 511  LHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNAN 570
            LHK SI++H  +V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA  ++   
Sbjct: 482  LHKLSILSHFAKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVK 540

Query: 571  NQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL-LYSSGVSSSGLGSFTGKP 629
            N    P NG+P+ S IQD I +A LL+ KD F +R  F  + LY                
Sbjct: 541  NNLATPKNGEPIISAIQDFITAAYLLSSKDIFYDRKTFTHICLY---------------- 584

Query: 630  GQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFF 689
               +L S +  ++ P  P++ KP+ LWTGKQV   ++      RP               
Sbjct: 585  ---MLESDTRFDLPP--PSVLKPQILWTGKQVFNVLM------RP--------------- 618

Query: 690  KTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSE 749
                  +KQS    N             D + ++ +  +G P           ++ + ++
Sbjct: 619  ------NKQSPVLIN------------LDAACREFKAPKGTP-----------RDLDAND 649

Query: 750  EKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHG 806
              L I  ++++ GV+DK+         + + +   +G + A   ++ LSRL   +L   G
Sbjct: 650  GWLCIRNSEIMCGVMDKSTIGSGKKDSVFYVMLRDFGPDVASEGMNRLSRLSARWLTNLG 709

Query: 807  FTCGVDDLLILKDKERERKNHL--HGSEEIGKRVHL-EALELEDGAEIDPIKLKSEIEKA 863
            F+ G+ D+    +K  E K+H+  H   +  + + L +  +LE     D    +  +E A
Sbjct: 710  FSIGITDVY-PGEKLLEEKHHIVEHAYAQCDEVIQLFKNGKLEKAPGCDE---QMTMENA 765

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS--LMTTSGAKGSK 921
            + G            + S++ +      I EL            W S  +M TSG+KGS 
Sbjct: 766  ISG------------LLSKVRQQAGEICIAEL----------SRWNSPLIMATSGSKGSD 803

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            +N  Q+ + +GQQ +  +RV      +TLP F      P A GF+ + F +GL P E+ F
Sbjct: 804  INVAQMVALVGQQIIGNQRVQDGFQDRTLPHFPKHARQPPAKGFVRNSFFSGLTPTEFLF 863

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD- 1040
            H ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++  +IVQF YG+D +D 
Sbjct: 864  HAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRNSSSNIVQFQYGDDKLDP 923

Query: 1041 ---------VHQTSFISKFDALAARERGRGRGRNK---FCD--------KGSHTFVMGRN 1080
                     VH     +  +        +G   ++    C         K +   ++G+ 
Sbjct: 924  VDMEGRAKPVHFDRTFTHAEVTTFDNSDKGLLPDEIITLCQNLLAPERAKLARFDLLGKK 983

Query: 1081 QEMIYKKCSG--QLDASNAYIMELPDALKDNAEKFAD--------------KFLSNEMAK 1124
             E   +   G  QL+++  ++  + D +   AEK                     +  A 
Sbjct: 984  LEYNDRSDHGIDQLESARDFLQSIEDYVCAKAEKLRSIDSGTKQRGKGVIHTAKVSTRAL 1043

Query: 1125 QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
              F+     K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   M++T G+PR++
Sbjct: 1044 TSFITACLTKYKRAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIK 1103

Query: 1185 EILTIASKDIKTPVITCPLL 1204
            EI+  ASK+I TPVITC L+
Sbjct: 1104 EIIN-ASKEISTPVITCELV 1122



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG    +C GHFGH+ LV+P ++   F  + ++L+ IC  C H      E    +R+
Sbjct: 78  CDTCGGALQVCSGHFGHVKLVLPAFHVGYFKRVISILQEICKECSHILLPETERRAFLRE 137

Query: 61  L 61
           L
Sbjct: 138 L 138


>gi|389746863|gb|EIM88042.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
           [Stereum hirsutum FP-91666 SS1]
          Length = 1754

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 264/740 (35%), Positives = 380/740 (51%), Gaps = 102/740 (13%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    F CPGHFGHI+L  PV++PL    +Y LL+  C FCH FK SR  + K   K
Sbjct: 63  CSTCHLNYFACPGHFGHIELPNPVFHPLFMMNMYNLLRATCLFCHRFKMSRPTLLKYQAK 122

Query: 61  LELIIKGDIIAAK--------------SLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNY 106
           L L+  G + A +              ++D D P E+ +  ++ +      ++    G+ 
Sbjct: 123 LRLLEAGQLEAIQMIDEMNIVTKTDEDAMDDDAPGETVDAYEARLELYIRLTLSRASGSK 182

Query: 107 DNVRNLKPQEWTSLQFAEAKLALLQFLKIETTK-CGNCKAKNPRISK------------P 153
            +          SL F   K  +++FLK    K C  C A      K            P
Sbjct: 183 RDAYK------DSLVFQARKDLIMEFLKAAIVKKCTPCGAHGYTFRKEGHTKIIEYDLTP 236

Query: 154 TFGWIH-MNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGT 212
               +H   G+  A++   +    N     S   E+ D+  S D  A      + TF   
Sbjct: 237 KQKAMHDALGLRRANVLHEIHTSKNSSAPDSSTVEDPDVDMSEDEGAG-----DATFSDD 291

Query: 213 QDT-AARRHQKGSG---AVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI--- 265
           +++ +A++  +  G   A     K  +      + PS+ +  + +L+  E  +C+ +   
Sbjct: 292 EESDSAQQEDRVEGVARAANGKIKGARGRNERIMPPSECRAHLRRLFHKEATMCAMLYGR 351

Query: 266 ----SDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANI 321
               + +   G    A   +FF+ VV V P +FR P+   D++ EH Q  LL KVL    
Sbjct: 352 HGPLAPVNAAGL-SMASADMFFMEVVPVAPTRFRPPAIMNDTIFEHSQNELLGKVLNTTY 410

Query: 322 YLANA------------YVNQPDNAKVI---VARWMNLQQSVNVLFDG-KNAAGQRD--- 362
            L +               N+ +  +++   +   + LQ  VN   D  KN A  +    
Sbjct: 411 RLRDVNESLKVASVKEEAFNEEERRRLLGTLLETLVQLQIDVNSFIDSSKNPAPVKQGKL 470

Query: 363 MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERV 422
              G+ Q LEKKEGLFR+ +MGKRVNYA RSVISPD  +  NEIGIPP FA +LT+PE V
Sbjct: 471 PPQGVKQGLEKKEGLFRKHMMGKRVNYAARSVISPDVNIEPNEIGIPPVFARKLTFPEPV 530

Query: 423 TPWNVVKLRDSIINGAEIHPGAT---------HYLDKLSTMRLPPNKKMRISIGRKLDTS 473
           T  N+ ++R  +ING +I+PGA+          +LDKL+        + R +I  +L T 
Sbjct: 531 TTANIHEMRQLVINGPKIYPGASIVEYEDGSQQFLDKLTV-------EQRTAIANQLLTP 583

Query: 474 RGAIVQP---GKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTL 530
           +G        G  +      K V+RHL+DGD++++NRQPTLHKPS+MAH  RVLKGEKT+
Sbjct: 584 QGNTNGRSGFGLSTRTASVNKKVHRHLRDGDMLILNRQPTLHKPSMMAHKARVLKGEKTI 643

Query: 531 RMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHI 590
           RMHYANC++YNADFDGDEMN+HFPQ+EV+RAEA  I N +NQY+ P++G PLR LIQDH+
Sbjct: 644 RMHYANCNSYNADFDGDEMNIHFPQNEVARAEAMLIANTDNQYLVPTSGKPLRGLIQDHV 703

Query: 591 VSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIW 650
           V+   +T ++TF  R+E+ QLLY +            +P             LP  P IW
Sbjct: 704 VAGLWMTNQETFFTREEYFQLLYGA-----------LRPEDDTFHESGRLRTLP--PTIW 750

Query: 651 KPEPLWTGKQVITAVLNHIT 670
           KP+PLWTGKQ+I+ V+ +IT
Sbjct: 751 KPKPLWTGKQIISTVMLNIT 770



 Score =  337 bits (863), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 213/510 (41%), Positives = 290/510 (56%), Gaps = 59/510 (11%)

Query: 749  EEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHG 806
            E +++    +L+ G +DK+ F  +DYGLVH+V ELYG++ AG LL  LSRLFT FLQ   
Sbjct: 796  EGEVIFMHGELLCGTLDKSAFGASDYGLVHSVYELYGADVAGRLLGVLSRLFTKFLQHRA 855

Query: 807  FTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL-ELEDG-AEIDPIKLKSEIEKAM 864
            FTC +DDL +      +R   +  +   G    ++    L D  A      L   +   +
Sbjct: 856  FTCRMDDLTLTDAGNAKRTELIRNAANFGTEGAMDNFPSLADTPAHEKHAALTRLLRDVL 915

Query: 865  RGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNF 924
            R   D  +A  DM + ++L K T S + + ++  GL +    N +  MT SGAKGS VN 
Sbjct: 916  RD--DNKMAGLDMTVKTKLAKLTKS-IADAVMPNGLSRKFPHNHMQAMTQSGAKGSAVNA 972

Query: 925  QQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCM 984
            QQIS  LGQQELEG+RVP MVSGKTLPSF P++    AGG++  RFLTG++PQE++FHCM
Sbjct: 973  QQISCALGQQELEGRRVPVMVSGKTLPSFKPFETKAIAGGYVASRFLTGVKPQEFFFHCM 1032

Query: 985  AGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV--- 1041
            AGREGL+DTAVKTSRSGYLQR LIK+LE +++ YD +VR +D S+ QF YG D +DV   
Sbjct: 1033 AGREGLIDTAVKTSRSGYLQRSLIKHLEGIRVHYDNTVRGSDDSVYQFHYGGDALDVTKQ 1092

Query: 1042 ---HQTSFISK-FDALAARERGRGRGRNKFCDKGSHTF---VMGRNQEMIYKKCSGQLDA 1094
               +Q +F+++ F +L  R +   R +    DK +  +   V+ ++ E   K    + DA
Sbjct: 1093 KHLYQFAFMAQNFKSLLERLQIH-RPQGVIDDKKAVKYMRKVLKKSAERKDKDTPAKRDA 1151

Query: 1095 SNAYIMELPDA--LKDNAEKFADKF--------------------------------LSN 1120
                + +   A  L   +EKFA+K                                    
Sbjct: 1152 LETPMEKYSPALFLGATSEKFAEKLEAYMKANPDGLLTGADDEDEEEDEDAEMEDGTAER 1211

Query: 1121 EMAKQDFLKLVKH-------KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGE 1173
            ++ ++D L   KH       K++ SL +PGE VGLLA Q VGEPSTQMTLNTFH AG G 
Sbjct: 1212 KIKRRDPLLAPKHLKSLMLFKYLRSLVEPGEAVGLLAGQGVGEPSTQMTLNTFHFAGHGA 1271

Query: 1174 MNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
             NVTLGIPRL+EI+  AS   KTP +T  +
Sbjct: 1272 ANVTLGIPRLREIVMTASTKPKTPSMTMTI 1301


>gi|325091897|gb|EGC45207.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
          Length = 1456

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 310/980 (31%), Positives = 475/980 (48%), Gaps = 167/980 (17%)

Query: 275  KKAGHSIFFLGVVLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQANIYLANAYVN-QPD 332
            ++A   +F    V  PP+  R PS G ++   E   T  L  ++Q+NI L NA +   P 
Sbjct: 260  EEARPEVFLWQYVPAPPVCIR-PSVGQEAASTEDDLTAKLGDIIQSNINLKNALIKGAPV 318

Query: 333  NAKVIVARWMNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYA 390
               +    +M LQ +V +  D  G   A       G CQ L+ K+G FR  L GKRV+++
Sbjct: 319  QTIIECWDYMQLQLAVYINSDVPGLQKADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFS 378

Query: 391  CRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDK 450
             R+VISPDP L VNE+ +P   A+ +TYPE+VT +N  KLR  I NG +  PGA + L K
Sbjct: 379  GRTVISPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPGANYVLKK 438

Query: 451  LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPT 510
                    N KM +  G            P   ++   EG +V RH++DGD+VL NRQP+
Sbjct: 439  ------SQNFKMNLKFG-----------NPNLVANELEEGDIVERHIEDGDIVLFNRQPS 481

Query: 511  LHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNAN 570
            LHK SI++H  +V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA  ++   
Sbjct: 482  LHKLSILSHFAKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVK 540

Query: 571  NQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL-LYSSGVSSSGLGSFTGKP 629
            N    P NG+P+ S IQD I +A LL+ KD F +R  F  + LY                
Sbjct: 541  NNLATPKNGEPIISAIQDFITAAYLLSSKDVFYDRKTFTHICLY---------------- 584

Query: 630  GQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFF 689
               +L S +  ++ P  P++ KP+ LWTGKQV   ++      RP               
Sbjct: 585  ---MLESDTLFDLPP--PSVLKPQILWTGKQVFNVLM------RP--------------- 618

Query: 690  KTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSE 749
                  +KQS    N             D + ++ +  +G P           ++ + ++
Sbjct: 619  ------NKQSPVLIN------------LDAACREFKAPKGTP-----------RDLDAND 649

Query: 750  EKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHG 806
              L I  ++++ GV+DK+         + + +   +G + A   ++ LSRL   +L   G
Sbjct: 650  GWLCIRNSEIMCGVMDKSTIGSGKKDSVFYVMLRDFGPDVASEGMNRLSRLSARWLTNLG 709

Query: 807  FTCGVDDLLILKDKERERKNHL--HGSEEIGKRVHL-EALELEDGAEIDPIKLKSEIEKA 863
            F+ G+ D+    +K  E K+H+  H   +  + + L +  +LE     D    +  +E A
Sbjct: 710  FSIGITDVY-PGEKLLEEKHHIVEHAYAQCDEVIQLFKNGKLEKAPGCDE---QMTMENA 765

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS--LMTTSGAKGSK 921
            + G            + S++ +      I EL            W S  +M TSG+KGS 
Sbjct: 766  ISG------------LLSKVRQQAGEICIAEL----------SRWNSPLIMATSGSKGSD 803

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            +N  Q+ + +GQQ +  +RV      +TLP F      P A GF+ + F +GL P E+ F
Sbjct: 804  INVAQMVALVGQQIIGNQRVQDGFQDRTLPHFPKHARQPPAKGFVRNSFFSGLTPTEFLF 863

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD- 1040
            H ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++  +IVQF YG+D +D 
Sbjct: 864  HAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRNSSSNIVQFQYGDDKLDP 923

Query: 1041 ---------VHQTSFISKFDALAARERGRGRGRNK---FCD--------KGSHTFVMGRN 1080
                     VH     +  +        +G   ++    C         K +   ++G+ 
Sbjct: 924  VDMEGRAKPVHFDRTFTHAEVTTFDNSDKGLLPDEIITLCQNLLAPERAKLARFDLLGKK 983

Query: 1081 QEMIYKKCSG--QLDASNAYIMELPDALKDNAEKFAD--------------KFLSNEMAK 1124
             E   +   G  QL+++  ++  + D +   AEK                     +  A 
Sbjct: 984  LEYNDRSDHGIDQLESARDFLQSIEDYVCAKAEKLRSIDSGTKQRGKGVIHTAKVSTRAL 1043

Query: 1125 QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
              F+     K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   M++T G+PR++
Sbjct: 1044 TSFITACLTKYKRAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIK 1103

Query: 1185 EILTIASKDIKTPVITCPLL 1204
            EI+  ASK+I TPVITC L+
Sbjct: 1104 EIIN-ASKEISTPVITCELV 1122



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG    +C GHFGH+ LV+P ++   F  + ++L+ IC  C H      E    +R+
Sbjct: 78  CDTCGGALQVCSGHFGHVKLVLPAFHVGYFKRVISILQEICKECSHILLPETERRAFLRE 137

Query: 61  L 61
           L
Sbjct: 138 L 138


>gi|302673160|ref|XP_003026267.1| hypothetical protein SCHCODRAFT_71335 [Schizophyllum commune H4-8]
 gi|300099948|gb|EFI91364.1| hypothetical protein SCHCODRAFT_71335 [Schizophyllum commune H4-8]
          Length = 1402

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 313/1016 (30%), Positives = 497/1016 (48%), Gaps = 175/1016 (17%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            L P  V D+  ++ + + EL        +  FG+      F    + VPP+  R PS   
Sbjct: 214  LNPLKVLDLFRRISDEDCELLGL-----RPKFGRPEE---FLWQYISVPPVAIR-PSVAQ 264

Query: 302  DSVM-EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGK----- 355
            D    E   TV L++++  N  +           +  + +W  LQ SV +  + +     
Sbjct: 265  DGASNEDDLTVKLTEIVFTNALIKQGLAKGAPTPQ-FMEQWEFLQLSVAMYINSELPGVP 323

Query: 356  NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALR 415
            +  GQR +  G  Q L+ K+G FR  L GKRV+++ R+VISPDP L ++E+ +P   A  
Sbjct: 324  SQPGQRPI-RGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPERVAKI 382

Query: 416  LTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRG 475
            LTYPERVT  N+  LR +++NG ++HPGA         +    NKK  +  G     +R 
Sbjct: 383  LTYPERVTVHNMEGLRKAVLNGPDVHPGANF-------VARGENKKF-LKFG-----NRK 429

Query: 476  AIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYA 535
            A+      ++N   G +V RH+ DGD+VL NRQP+LHK SIM H V+V +  ++ R++  
Sbjct: 430  AV------AENLAIGDVVERHIIDGDIVLFNRQPSLHKLSIMCHRVKV-RPWRSFRLNEC 482

Query: 536  NCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAAL 595
             C  YNADFDGDEMN+H PQ E +R EA  +++  +  V P NGDP+ + IQD I ++ L
Sbjct: 483  VCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVTPRNGDPVIAAIQDFITASYL 542

Query: 596  LTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPL 655
            L++KDTF +R  F Q+                       ++ +  ++    P I KP+ L
Sbjct: 543  LSRKDTFFDRRAFTQIC--------------------CYLADANMQIDIPPPTILKPQRL 582

Query: 656  WTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKM 715
            WTGKQ+   ++      RP                     +++S    N + K +K  ++
Sbjct: 583  WTGKQIFNVLM------RP---------------------NRKSKVFVNVECKCNKVEEV 615

Query: 716  HKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---Y 772
             K          E  P  EK        +   ++  L+I  ++++ G++DKA        
Sbjct: 616  KK----------EHYPAIEK-----PRNDLMANDGWLVIVNSEIMCGLMDKATIGSGKKK 660

Query: 773  GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSE 832
             +   +   YG + A   ++ +++L   +L  +GF+ G++D +I   +  E+K      E
Sbjct: 661  SIFGVILRDYGPHEAAAAMNRVAKLCARYLANYGFSLGIND-VIPGPELTEKK------E 713

Query: 833  EIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVI 892
            ++ ++ + E L        D I L        + GG       D + T +    +  S +
Sbjct: 714  DLIEKAYAECL--------DKIALA-------KKGGLKNKPGCDQEQTLEAEISSILSNV 758

Query: 893  NELLSEGLLKPTGK-NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLP 951
             E   +  ++   + N   +M TSG+KGS +N  Q+ + +GQQ + G RVP     ++LP
Sbjct: 759  REKAGQICMRELSRHNAPLIMATSGSKGSVINVCQMVACVGQQIIAGHRVPDGFQDRSLP 818

Query: 952  SFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 1011
             F      P + GF+ + F TGL   E+ FH ++GREGLVDTAVKT+ +GY+QR L+K L
Sbjct: 819  HFPKKSKEPPSKGFVRNSFYTGLVATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKAL 878

Query: 1012 ECLKISYDYSVRDADGSIVQFCYGEDGV-------DVHQTSFISKFDALAARERGRGRG- 1063
            E L   YD +VR++   +VQF YG+DG+       D     F   +   AA    +GRG 
Sbjct: 879  EDLTTQYDLTVRNSAAGVVQFRYGDDGLDPACLEGDAQPIDFERAWVHSAAIASRKGRGL 938

Query: 1064 --------------RNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDN 1109
                          ++K+  + + T+ M   ++ I +K + +L      I+     + D 
Sbjct: 939  LPFEVMDLMNSEMAKSKWVSECTTTY-MDSIRDFIEEKVAKRL-----AILRERRGMYDA 992

Query: 1110 AEKF---------------ADKFLSNEMAK------QDFLKLVKHKFVLSLAQPGEPVGL 1148
             E+                ADK + +  AK      + FL++   K+V +  +PG  VG 
Sbjct: 993  MERIDDWDEEMDLSMGASDADKAVVDNKAKVTEAQLRTFLQIAWTKYVKARIEPGSTVGA 1052

Query: 1149 LASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            + +QS+GEP TQMTL TFH AG   MNVTLG+PR++EI+  ASK+I TP+I+C L+
Sbjct: 1053 VGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-ASKNISTPIISCKLV 1107



 Score = 43.5 bits (101), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TCGQ    C GH+ +I L VPV++   F     +L+ IC  C
Sbjct: 66  CETCGQSSVNCVGHYAYIKLCVPVFHIGYFKHTIGILQCICKTC 109


>gi|171690214|ref|XP_001910032.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945055|emb|CAP71166.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1706

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 261/735 (35%), Positives = 386/735 (52%), Gaps = 99/735 (13%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG  Q  CPGH GHI+L VP Y+P+  +  +  L+ +C +CHHF+ +RRE+ +    
Sbjct: 62  CRTCGLNQAQCPGHPGHIELAVPCYHPVFMDQAFRFLRSMCIYCHHFRTARREIHRFACM 121

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPE------------DSDVSNKSSCSMVTPRGNYDN 108
           L+L+  G +  A+ +D    SE    +            D +  ++ S + VT R     
Sbjct: 122 LKLLQYGLLHEAQLIDAISESELGGEKLKSMRLPDIPNMDDEAEDEGSTTDVTMRAREAY 181

Query: 109 VRNLKPQEWTSLQF-----------AEAKLALLQFL---KIETTKCGNCKAKNPRISKPT 154
           VR +  +  T L             AE + ALL+ L    ++  +C +C   +P + K  
Sbjct: 182 VRQVLKEHRTRLSAGDIKRAKHEGAAEMRRALLKELFATLVKEKRCKSCDGISPTLRKDR 241

Query: 155 FGWIHMNGMPHADIRANLIRG----------CNLGETFSGGEEEKDLGASSDVDAPETHS 204
           +  I   G+   D +A + +            N  +  + GE+E      S+ +  +   
Sbjct: 242 YVKIFERGLSSKD-KATMAQAGRKSRDALTMTNKNKKDADGEDEGVADMESEPEPEDEGE 300

Query: 205 FNGTFPG------TQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENE 258
            +    G        +T  +   K   + P  F          L   +VK  ++ L++ E
Sbjct: 301 GDSLDEGGDVAMKDAETETQTKSKTKASAPQRF----------LNSMEVKGRLDLLFQAE 350

Query: 259 FELCSFISDMQ---QQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDS-VMEHPQTVLLS 314
            E+ S I + +   +    K     IFF+  ++VPP + R  ++ G++ + E  Q  L  
Sbjct: 351 REIMSLIFNTRPPTKASRSKPITADIFFIHTLMVPPNRMRPEARMGENQITEAEQNSLYK 410

Query: 315 KVLQAN---------IYLANAYVNQ----PDNAKVIVARWMNLQQSVNVLFD-GKNA--- 357
           K+++ +         I L    V Q    P +   +   W  LQ++VN L D  KN    
Sbjct: 411 KIIEKSSAVGQISREIALGKKAVVQEGRRPRDLNHLYQAWTELQEAVNSLMDRDKNPIQG 470

Query: 358 -AGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRL 416
            AG+R+   GI Q LEKKEGLFR+ +MGKRVN+A RSVISPDP +  +EIG+PP FA++L
Sbjct: 471 NAGKRN-EEGIKQKLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETSEIGVPPVFAVKL 529

Query: 417 TYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM--RISIGRKLDTSR 474
           TYPE VT +N   L+ ++ING E  PGA    ++   +    NK +  R+++   L    
Sbjct: 530 TYPEPVTHFNFKDLQQAVINGVEKWPGAAAIENENGQVVNLRNKSLEERVALANTL---- 585

Query: 475 GAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY 534
              + P  +S     GK V RHL +GDVVL+NRQPTLHKPS+M H VRVL GEKTLRMHY
Sbjct: 586 ---LAPSTNSFANLRGKKVLRHLTNGDVVLMNRQPTLHKPSMMGHRVRVLPGEKTLRMHY 642

Query: 535 ANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAA 594
           ANC++YNADFDGDEMN+HFPQ+E++RAEA  + N ++QYV  + G PLR LIQDH+  + 
Sbjct: 643 ANCNSYNADFDGDEMNMHFPQNEIARAEALQLANTDSQYVSGTGGSPLRGLIQDHLSVSV 702

Query: 595 LLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEP 654
           +L  KDTF ++ ++ QL+Y+     S  G  TG            +++L + PA+ KP P
Sbjct: 703 ILCNKDTFFSKGDYMQLVYAGLRPES--GHITG------------EKILTVPPAMIKPRP 748

Query: 655 LWTGKQVITAVLNHI 669
           LWTGKQVI  VL +I
Sbjct: 749 LWTGKQVIDTVLKNI 763



 Score =  359 bits (921), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 207/476 (43%), Positives = 279/476 (58%), Gaps = 38/476 (7%)

Query: 759  LVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLI 816
             V G++DK+Q   +D GLVH V E+YG   A  LLS L RL T +L M  FTCG+DDL +
Sbjct: 801  FVHGILDKSQLGSSDGGLVHAVHEVYGPGVAAKLLSCLGRLLTRYLAMVAFTCGMDDLRM 860

Query: 817  LKDKERERKNHLHGSEEIGKRVHLEALELEDG--AEIDPIKLKSEIEKAMRGGGDAAVAY 874
                E++RK  +  ++ IG  V  + + LE+    + DP+ L+   E          +  
Sbjct: 861  TPKGEQDRKELIKEAKHIGLEVAAKYVSLEEQKPTKDDPLLLERLEEVLRDDKKQEGLEL 920

Query: 875  FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
                +T+Q     SS +    L  GL KP   N +  MT SGAKGS VN   IS +LGQQ
Sbjct: 921  ----LTNQRVAKLSSEITRVCLPAGLEKPFPHNHMQSMTISGAKGSTVNANLISCNLGQQ 976

Query: 935  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
             LEG+RVP M+SG+TLPSF P+D   RAGG+I+ RFLTG+RPQEYYFH MAGREGL+DTA
Sbjct: 977  TLEGRRVPVMISGRTLPSFRPFDTDARAGGYIVQRFLTGIRPQEYYFHHMAGREGLIDTA 1036

Query: 995  VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALA 1054
            VKTSRSGYLQRCL+K +E L +SYD SVRD+DGS+VQF YGED VD+ +  +++ F+   
Sbjct: 1037 VKTSRSGYLQRCLVKGMEGLAVSYDSSVRDSDGSVVQFLYGEDSVDITKQKYLNDFE-FV 1095

Query: 1055 ARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDA-------------------- 1094
             R       + +F + G+       N++ I K+    + +                    
Sbjct: 1096 LRNLDSELPQLRFHEDGTQALF--ENKDEIIKRMKSAIRSIGTRNPQDPVTSKLEPSRYG 1153

Query: 1095 ---SNAYIMELPDALKDNAEKF----ADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVG 1147
               S  +   + D LK N          K  + +++++   K++  K++ SL +PGE VG
Sbjct: 1154 FATSEKFFNHMMDYLKTNKHGLIKEKGSKEKAGQISRKTAEKILAAKYIRSLVEPGEAVG 1213

Query: 1148 LLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            + A QSVGEPSTQ+TLNTFHLAG    NVTLG+PRL+EIL  AS +I TP +T  L
Sbjct: 1214 ITAGQSVGEPSTQLTLNTFHLAGHSAKNVTLGVPRLREILMTASANISTPSMTLVL 1269


>gi|281340311|gb|EFB15895.1| hypothetical protein PANDA_006866 [Ailuropoda melanoleuca]
          Length = 1375

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 303/965 (31%), Positives = 461/965 (47%), Gaps = 164/965 (16%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 233  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 290

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 291  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 350

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG E+HPGA     + 
Sbjct: 351  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRH 410

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            + M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 411  TQMKRFLKYGNREKMAQELKY-----------------GDIVERHLIDGDVVLFNRQPSL 453

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ +V K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 454  HKLSIMAHLAKV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 512

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 513  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 555

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQ+ + +L                  P D   
Sbjct: 556  -ILVGKDEKIKVHLPPPTILKPVTLWTGKQIFSVILR-----------------PSDDNP 597

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK +++                    +++ 
Sbjct: 598  VRANLRTKG-----------------KQYCGKGEDLC-------------------VNDS 621

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G + A   +S L+RL  V+L   GF
Sbjct: 622  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQSEAADAMSRLARLAPVYLSNRGF 681

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 682  SIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQQ 724

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 725  PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 776

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 777  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 836

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 837  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD--P 894

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ-----EMIYKKCSGQLDASNAY 1098
             +   K + L   E  R     K          + +N+     E I KK +  L   +++
Sbjct: 895  AAMEGKDEPL---EFKRVLDNIKAVFPCQSEPALSKNELVLTTESIMKK-TEFLCCQDSF 950

Query: 1099 IMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVLS 1138
            + E+ + +K  +EK     DK+  N+    +                 FL+  + K++ +
Sbjct: 951  LQEIKNFVKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMRA 1010

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+
Sbjct: 1011 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPI 1069

Query: 1199 ITCPL 1203
            IT  L
Sbjct: 1070 ITAQL 1074



 Score = 47.0 bits (110), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S  E
Sbjct: 54  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSHEE 106


>gi|154270754|ref|XP_001536231.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
            capsulatus NAm1]
 gi|150409805|gb|EDN05245.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
            capsulatus NAm1]
          Length = 1439

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 312/974 (32%), Positives = 474/974 (48%), Gaps = 172/974 (17%)

Query: 275  KKAGHSIFFLGVVLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQANIYLANAYVN-QPD 332
            ++A   +F    V  PP+  R PS G ++   E   T  L  ++Q+NI L NA +   P 
Sbjct: 260  EEARPEVFLWQYVPAPPVCIR-PSVGQEAASTEDDLTAKLGDIIQSNINLKNALIKGAPV 318

Query: 333  NAKVIVARWMNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYA 390
               +    +M LQ +V +  D  G   A       G CQ L+ K+G FR  L GKRV+++
Sbjct: 319  QTIIECWDYMQLQLAVYINSDVPGLQKADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFS 378

Query: 391  CRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDK 450
             R+VISPDP L VNE+ +P   A+ +TYPE+VT +N  KLR  I NG +  PGA + L K
Sbjct: 379  GRTVISPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPGANYVLKK 438

Query: 451  LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPT 510
                    N KM +  G            P   ++   EG +V RH++DGD+VL NRQP+
Sbjct: 439  ------SQNFKMNLKFG-----------NPNLVANELEEGDIVERHIEDGDIVLFNRQPS 481

Query: 511  LHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNAN 570
            LHK SI++H  +V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA  ++   
Sbjct: 482  LHKLSILSHFAKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVK 540

Query: 571  NQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL-LYSSGVSSSGLGSFTGKP 629
            +    P NG+P+ S IQD I +A LL+ KD F +R  F  + LY                
Sbjct: 541  HNLATPKNGEPIISAIQDFITAAYLLSSKDVFYDRKTFTHICLY---------------- 584

Query: 630  GQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFF 689
               +L S +  ++ P  P++ KP+ LWTGKQV   ++      RP               
Sbjct: 585  ---MLESDTRFDLPP--PSVLKPQILWTGKQVFNVLM------RP--------------- 618

Query: 690  KTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSE 749
                  +KQS    N             D + ++ +  +G P           ++ + ++
Sbjct: 619  ------NKQSPVLIN------------LDAACREFKAPKGTP-----------RDLDAND 649

Query: 750  EKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHG 806
              L I  ++++ GV+DK+         + + +   +G + A   ++ LSRL   +L   G
Sbjct: 650  GWLCIRNSEIMCGVMDKSTIGSGKKDSVFYVMLRDFGPDVASEGMNRLSRLSARWLTNLG 709

Query: 807  FTCGVDDLLILKDKERERKNHL--HGSEEIGKRVHL-EALELEDGAEIDPIKLKSEIEKA 863
            F+ G+ D+    +K  E K+H+  H   +  + + L +  +LE     D    +  +E A
Sbjct: 710  FSIGITDVY-PGEKLLEEKHHIVEHAYAQCDEVIQLFKNGKLEKAPGCDE---QMTMENA 765

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS--LMTTSGAKGSK 921
            + G            + S++ +      I EL            W S  +M TSG+KGS 
Sbjct: 766  ISG------------LLSKVRQQAGEICIAEL----------SRWNSPLIMATSGSKGSD 803

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            +N  Q+ + +GQQ +  +RV      +TLP F  +   P A GF+ + F +GL P E+ F
Sbjct: 804  INVAQMVALVGQQIIGNQRVQDGFQDRTLPHFPKYARQPPAKGFVRNSFFSGLTPTEFLF 863

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD- 1040
            H ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++  +IVQF YG+D +D 
Sbjct: 864  HAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRNSSSNIVQFQYGDDKLDP 923

Query: 1041 ---------VH-QTSF----ISKFD----------------ALAARERGRGRGRNKFCDK 1070
                     VH   +F    ++ FD                 L A ER +     +F   
Sbjct: 924  VDMEGRAKPVHFDRTFTHAEVTTFDNSDKGLLPDEIITLCQNLLAPERAK---LARFDLS 980

Query: 1071 GSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKL 1130
            G       R+   I      QL+++  ++  + D         A     +  A   F+  
Sbjct: 981  GKKLEYNDRSDHGI-----DQLESARDFLQSIEDYRGKGVIHTAK---VSTRALTSFITA 1032

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
               K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   M++T G+PR++EI+  A
Sbjct: 1033 CLTKYKRAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN-A 1091

Query: 1191 SKDIKTPVITCPLL 1204
            SK+I TPVITC L+
Sbjct: 1092 SKEISTPVITCELV 1105



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG    +C GHFGH+ LV+P ++   F  + ++L+ IC  C H      E    +R+
Sbjct: 78  CDTCGGALQVCSGHFGHVKLVLPAFHVGYFKRVISILQEICKECSHILLPETERRAFLRE 137

Query: 61  L 61
           L
Sbjct: 138 L 138


>gi|109503668|ref|XP_001056048.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Rattus
            norvegicus]
 gi|392353748|ref|XP_341389.5| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Rattus
            norvegicus]
          Length = 1390

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 299/970 (30%), Positives = 455/970 (46%), Gaps = 174/970 (17%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG ++HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
              M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  MQMKRFLKYGNREKMAQELKF-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ +V K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLAKV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQ+ + +L                  P D   
Sbjct: 571  -ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILR-----------------PSDDNP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK +++                     ++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGKGEDLCT-------------------NDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E  + ++   L+ + G               
Sbjct: 697  SIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCT------------- 743

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 744  ----AEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 791

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 792  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 851

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD--- 1040
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 852  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAA 911

Query: 1041 -------VHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLD 1093
                   +     +    A+   +  R   +N+          +    E I KK +  L 
Sbjct: 912  MEGKDEPLEFKRVLDNIKAVYPCQSERALSKNE----------LTLTTEAIMKK-NEFLC 960

Query: 1094 ASNAYIMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKH 1133
              ++++ E+   +K  +EK     DK+  N+    +                 FL+  + 
Sbjct: 961  CQDSFLQEIKTFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITRTQIEKFLETCRD 1020

Query: 1134 KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKD 1193
            K++ +  +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK 
Sbjct: 1021 KYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKA 1079

Query: 1194 IKTPVITCPL 1203
            I TP+IT  L
Sbjct: 1080 ISTPIITAQL 1089



 Score = 47.4 bits (111), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121


>gi|396499355|ref|XP_003845454.1| similar to DNA-directed RNA polymerase I subunit [Leptosphaeria
           maculans JN3]
 gi|312222035|emb|CBY01975.1| similar to DNA-directed RNA polymerase I subunit [Leptosphaeria
           maculans JN3]
          Length = 1707

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 265/737 (35%), Positives = 383/737 (51%), Gaps = 112/737 (15%)

Query: 1   CKTCGQRQFL-CPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVR 59
           C TCG   FL CPGH GHI+L VPVY+    + L  LL+  C +CH FK +R ++ + V 
Sbjct: 62  CTTCGLTTFLGCPGHCGHIELPVPVYHVTFMDQLLRLLRGKCVYCHQFKLARVQINEYVS 121

Query: 60  KLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSC----SMVTPRGNY--------- 106
           +L LI  G +  A  +   +          +V +  S      +V  R NY         
Sbjct: 122 RLRLIRCGLVREANEMHEHIDINKGKTGKKNVQDSDSDDDHEDIVGQRNNYVKKCMKRAG 181

Query: 107 ---DNVRNLKPQEWTSLQFAEAKLALL-QFLK--IETTKCGNCKAKNPRISKPTFGWI-- 158
               + R+++ +  T    AEA+  +L +F +  +   KC NC+  NP   K     +  
Sbjct: 182 ISKHDARSVREKNDT---IAEARRQVLKEFYQQLVAGKKCRNCQGINPTYRKDRGIKVFQ 238

Query: 159 -HMNGMPHADIRANLIRGCN------------LGETFSGGEEEKDLGASSD-----VDAP 200
            +++    A + A   R  N              +T    E   DL    +     +D  
Sbjct: 239 KNLSAKEKAQMAAAEKRFSNPLDILARREAKAKKQTVHADEGVADLDPQDEEDDEGIDLD 298

Query: 201 ETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFE 260
           +    +G+   T+   +R  ++   AV SG   Q+ + +     ++V+  +  L+E+E E
Sbjct: 299 DMQEADGSLVATE---SRTTKRSGTAVDSGDNAQEYITA-----AEVRAAMVLLFEHESE 350

Query: 261 LCSFISDMQQQGFGKKA----GHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKV 316
           +   +       +G K+       +FF+  ++VPP ++RL  K GDS+ E P+  L   +
Sbjct: 351 MVRLL----YSPYGSKSLVDVTADMFFMEAIIVPPNRYRLEDKTGDSIAESPKNSLYKAI 406

Query: 317 LQANIYL----------ANAYVNQPDNAKVIVARWMNLQQSVNVLFD-------GKNAAG 359
           L A   +          AN    +  N   +  +W+ LQ SVN L D       G+ AA 
Sbjct: 407 LNACESMRQISNEMKGQANEGGYRQRNFDDLQTQWVTLQGSVNALIDRDANPVQGRAAA- 465

Query: 360 QRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYP 419
               A GI Q LEKKEGLFR+ +MGKRVN+A RSVISPDP +  NEIG+PP FA++LTYP
Sbjct: 466 --TTADGIKQRLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFAMKLTYP 523

Query: 420 ERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL--PPNKKMRISIGRKLDTSRGAI 477
           E VT  N   L+++++NG +  PGA    ++   + L    N + R+++  +L       
Sbjct: 524 EPVTNHNFYDLKEAVLNGPDKWPGAHAVENEFGQVILLKKKNYEERLALANQL------- 576

Query: 478 VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 537
           + P     N  + K V+RHL +GDVV++NRQPTLHKPS+MAH  RVL GEKT+RMHYANC
Sbjct: 577 LAPSSSYSNGSKNKKVHRHLNNGDVVIMNRQPTLHKPSMMAHRARVLPGEKTIRMHYANC 636

Query: 538 STYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
           +TYNADFDGDEMN+HFPQ+E++RAEA  + + ++QY+  + G PLR LIQDHI     L+
Sbjct: 637 NTYNADFDGDEMNMHFPQNELARAEAMTVADTDHQYLSATAGKPLRGLIQDHISMGVWLS 696

Query: 598 KKDTFLNRDEFCQLLYS-----SGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKP 652
            KDTF  R+E+ QLLYS      G ++SG                    V  + P IWKP
Sbjct: 697 NKDTFFTREEYHQLLYSCLRPEDGHTTSG-------------------RVETVEPVIWKP 737

Query: 653 EPLWTGKQVITAVLNHI 669
            PLWTGKQ+IT VL +I
Sbjct: 738 RPLWTGKQLITTVLKNI 754



 Score =  280 bits (717), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 150/308 (48%), Positives = 207/308 (67%), Gaps = 9/308 (2%)

Query: 748  SEEKLLIYKND-LVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
            SEE  +I K+  L+ G++DKAQ   A  GL++ + E YG   AG  LS + RL T  L M
Sbjct: 779  SEENNVIIKDGMLLCGIMDKAQIGPAPGGLINGIFEAYGETIAGRALSIIGRLLTKLLHM 838

Query: 805  HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP--IKLKSEIEK 862
              F+CGV+DL++ ++ ++ R   L  +E++G  V  + + + D A+ID    +L+  +E 
Sbjct: 839  RAFSCGVEDLILTEEGDQARLAELRKAEKVGFEVAAKYVTM-DTAKIDANNPELRRRLES 897

Query: 863  AMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV 922
             +R   D      D+ +T+  N   S++V    L   L+K   KN +  MT SGAKGS V
Sbjct: 898  VLRD--DTKQHGLDL-LTNTANGQISTAVTAACLPNKLIKAFPKNQMQAMTGSGAKGSMV 954

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  QIS +LGQQ LEG+RVP MVSGK+LP F P++ + RAGG+I++RFLTG+RPQEYYFH
Sbjct: 955  NANQISCNLGQQVLEGRRVPIMVSGKSLPCFKPFETSVRAGGYIVNRFLTGIRPQEYYFH 1014

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVH 1042
             MAGREGL+DTAVKTSRSGYLQRC++K +E LK+ YD SVRD+DGS+VQF YGEDG+D+ 
Sbjct: 1015 MMAGREGLIDTAVKTSRSGYLQRCIVKGMEGLKVEYDTSVRDSDGSMVQFLYGEDGLDIT 1074

Query: 1043 QTSFISKF 1050
            +  ++  F
Sbjct: 1075 KQKYLKDF 1082


>gi|317419477|emb|CBN81514.1| DNA-directed RNA polymerase III subunit RPC1 [Dicentrarchus labrax]
          Length = 1390

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 296/965 (30%), Positives = 457/965 (47%), Gaps = 164/965 (16%)

Query: 282  FFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIV 338
              L  +LVPP+  R PS   D      E   T+ L++++  N  +    +      ++I+
Sbjct: 250  LILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGA-KTQMIM 307

Query: 339  ARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYACRS 393
              W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ R+
Sbjct: 308  EDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRT 367

Query: 394  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLST 453
            VISPDP L ++E+ +P + A  LTYPERV   N+  +R  + NG E+HPGA    ++ + 
Sbjct: 368  VISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPEVHPGANFIQNRHTQ 427

Query: 454  MRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHK 513
            M+       R  I ++L                   G +V RHL DGD+VL NRQP+LHK
Sbjct: 428  MKRFLKYGNREKIAQELRF-----------------GDVVERHLIDGDIVLFNRQPSLHK 470

Query: 514  PSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQY 573
             SIMAH+ +V K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++      
Sbjct: 471  LSIMAHIAKV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANL 529

Query: 574  VRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRV 633
            V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                  +
Sbjct: 530  VTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRSKACQIVAS------------------I 571

Query: 634  LISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 692
            L+ + E+  + L  PAI KP  LWTGKQ+                           F   
Sbjct: 572  LVGKDEKIRVTLPRPAIMKPMALWTGKQI---------------------------FSVI 604

Query: 693  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL 752
                K+   K N + K        K   GK +++                     ++  +
Sbjct: 605  LKPSKECPVKANLRTK-------GKQYCGKGEDLC-------------------YNDSFV 638

Query: 753  LIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTC 809
            +I+ ++L+ G +DK      +   + + +   +G   A   +S L+RL  VFL   GF+ 
Sbjct: 639  VIHNSELMCGSLDKGTLGSGSKNNIFYILLRDWGQLEAANAMSRLARLAPVFLSNRGFSI 698

Query: 810  GVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMR 865
            G+ D+     +LK K     +     +E     ++EAL+              ++++   
Sbjct: 699  GIGDVTPGQGLLKAKHDLLDDGYKKCDE-----YIEALK------------TGKLQQQPG 741

Query: 866  GGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQ 925
               +  +    ++  S +     S+ + EL           N   +M   G+KGS +N  
Sbjct: 742  CTAEETLEALILRELSVIRDRAGSACLREL--------DKSNSPLIMALCGSKGSFINIS 793

Query: 926  QISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMA 985
            Q+ + +GQQ + G RVP     ++LP F      P A GF+ D F +GL P E++FH MA
Sbjct: 794  QMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVADSFYSGLTPTEFFFHTMA 853

Query: 986  GREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD----- 1040
            GREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D     
Sbjct: 854  GREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPADME 913

Query: 1041 -----VHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDAS 1095
                 +     +    A+          +N+         +M R   +  +     L+  
Sbjct: 914  GKDEPLEFKRVLDNIRAVYTCPYEPALSQNELVLTADA--IMKRADFLCCR--DSFLEEI 969

Query: 1096 NAYIMELPDALKDNAEKFA---------------DKFLSNEMAKQDFLKLVKHKFVLSLA 1140
              +I  + + +K   +K+                D+    ++ K  +L+  + K++ +  
Sbjct: 970  KKFIKSVSERIKKTRDKYGINDNGTSEPKVLYQLDRITPTQLEK--YLETCRDKYMRAQM 1027

Query: 1141 QPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
            +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK+I TP+IT
Sbjct: 1028 EPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKNISTPIIT 1086

Query: 1201 CPLLV 1205
              L V
Sbjct: 1087 ANLDV 1091



 Score = 40.8 bits (94), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C TCG+    C GH+G++DL +P ++   F  +  +L+ IC  C     ++ +
Sbjct: 69  CLTCGKNLADCLGHYGYLDLELPCFHVGYFKAIIGILQMICKTCSSIMLTKED 121


>gi|301765986|ref|XP_002918413.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
            [Ailuropoda melanoleuca]
          Length = 1390

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 303/965 (31%), Positives = 461/965 (47%), Gaps = 164/965 (16%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            + M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  TQMKRFLKYGNREKMAQELKY-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ +V K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLAKV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQ+ + +L                  P D   
Sbjct: 571  -ILVGKDEKIKVHLPPPTILKPVTLWTGKQIFSVILR-----------------PSDDNP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK +++                    +++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGKGEDLC-------------------VNDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G + A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQSEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 697  SIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQQ 739

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 740  PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 791

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 792  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 851

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 852  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD--P 909

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ-----EMIYKKCSGQLDASNAY 1098
             +   K + L   E  R     K          + +N+     E I KK +  L   +++
Sbjct: 910  AAMEGKDEPL---EFKRVLDNIKAVFPCQSEPALSKNELVLTTESIMKK-TEFLCCQDSF 965

Query: 1099 IMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVLS 1138
            + E+ + +K  +EK     DK+  N+    +                 FL+  + K++ +
Sbjct: 966  LQEIKNFVKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMRA 1025

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+
Sbjct: 1026 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPI 1084

Query: 1199 ITCPL 1203
            IT  L
Sbjct: 1085 ITAQL 1089



 Score = 47.0 bits (110), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S  E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSHEE 121


>gi|91092426|ref|XP_968165.1| PREDICTED: similar to AGAP004703-PA [Tribolium castaneum]
 gi|270004743|gb|EFA01191.1| hypothetical protein TcasGA2_TC010518 [Tribolium castaneum]
          Length = 1390

 Score =  405 bits (1040), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 319/1004 (31%), Positives = 479/1004 (47%), Gaps = 181/1004 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--- 298
            L P DV  + E++ +++  L +  S        +++         +LVPP+  R PS   
Sbjct: 228  LTPIDVLKLFERIPQSDIPLLAMDS--------RRSQPKDLIFTRMLVPPVSIR-PSVVS 278

Query: 299  --KGG----DSVMEHPQTVLLSKVLQANIYLANAYVNQP----DNAKVIVARWMNLQQSV 348
              K G    D  M   + + ++ V++ +  L+ A VN      D  ++  A ++N + S 
Sbjct: 279  DLKAGTNEDDLTMRQSEIIFINDVIKKH-KLSGASVNMYQEGWDFLQLQTALYINSELSG 337

Query: 349  NVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGI 408
              L     A   +    G+ Q L+ K+G FR  L GKRV+++ R+VISPDP L ++++G+
Sbjct: 338  IPL-----AMMPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIDQVGV 392

Query: 409  PPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGR 468
            P + A  LT+PERV   N+  +R  +ING +  PGA +   K S  +       R  + +
Sbjct: 393  PLHIAKILTFPERVIHANIDVMRQLVINGPDKWPGANYVQQKGSAFKKFLKYGNREKLAQ 452

Query: 469  KLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK 528
            +L                   G +V RHL + DVVL NRQP+LHK SIMAH  +V +  +
Sbjct: 453  ELKL-----------------GDLVERHLHNDDVVLFNRQPSLHKLSIMAHRTKVHQ-HR 494

Query: 529  TLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQD 588
            T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++   N  V P NG+ L +  QD
Sbjct: 495  TFRFNECVCNPYNADFDGDEMNLHLPQTEEAKAEALILMGNKNNLVTPRNGELLIAATQD 554

Query: 589  HIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPA 648
             +    LLTKKDTFL+      L ++S ++++ L             + +  ++    P 
Sbjct: 555  FLTGGYLLTKKDTFLD------LAHASQLAATLLAE-----------NDTNMQIDLPTPC 597

Query: 649  IWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
            I KP  LW+GKQ+ + +                           F  +K+   K N + K
Sbjct: 598  ILKPRRLWSGKQICSLI---------------------------FRPNKKCPVKANLEAK 630

Query: 709  LSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQ 768
                                GK          K++E  + +  +LI  ++L+ G +DK+ 
Sbjct: 631  --------------------GKA-------YTKNRELCVKDSYVLIRNSELIAGTLDKSH 663

Query: 769  FADYG----LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                G    + + +   +GS  A   +  L++L + +L   GF+ G+ D+   K   R R
Sbjct: 664  LGSGGKGNNIFYVILRDFGSEYAIKSMWRLAKLTSYYLMNSGFSIGIGDVTPSKGLLR-R 722

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRG--------GGDAAVAYFD 876
            KN L                LEDG      K    I +   G          +  +    
Sbjct: 723  KNKL----------------LEDGY----TKCDEYIRQMADGRLQCQPGCTAEETLEAVI 762

Query: 877  MKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
            +K  S + +H   + + EL       PT    I  M  SG+KGS +N  Q+ + +GQQ L
Sbjct: 763  LKELSVIREHAGQACLAEL------HPTNSPLI--MALSGSKGSFINISQMIACVGQQAL 814

Query: 937  EGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVK 996
             GKRVP     ++LP F      P A GF+ + F TGL P E++FH M GREGLVDTAVK
Sbjct: 815  NGKRVPDGFENRSLPHFPHHSKTPEAKGFVENSFYTGLTPTEFFFHTMGGREGLVDTAVK 874

Query: 997  TSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAAR 1056
            T+ +GY+QR L+K+LE L + YD SVR+A+G IVQ  YG DG+D    +++   D     
Sbjct: 875  TAETGYMQRRLVKSLEDLVVHYDGSVRNAEGDIVQVNYGGDGLD---PTYMEGKDCPVDF 931

Query: 1057 ERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFA-- 1114
            +R     + K C     T ++   Q     K   + DA N    E    LK+  +K A  
Sbjct: 932  DRVLRHVQAK-CPYRDET-ILNSVQIRRATKTFLETDALNECSEEFKAELKNFMDKVALR 989

Query: 1115 -----DKFLSNEMAKQ----------DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPST 1159
                 +KF   ++ K+           FL++   K+  S+ +PG  VG LA+QS+GEP T
Sbjct: 990  VENIYNKFGDGKVVKEIERLTCSQLVTFLQICGSKYTRSIIEPGTAVGALAAQSIGEPGT 1049

Query: 1160 QMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            QMTL TFH AG   MN+T G+PR++EI+  ASKDI TP+IT  L
Sbjct: 1050 QMTLKTFHFAGVASMNITQGVPRIKEIIN-ASKDISTPIITASL 1092



 Score = 49.7 bits (117), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GHFG+IDL +PVY+   F  + ++L+ IC  C     S  E
Sbjct: 69  CQTCGKNINSCVGHFGYIDLELPVYHVGYFRSIISILQTICKNCARVLLSEEE 121


>gi|225216944|gb|ACN85238.1| putative RNA polymerase A(I) large subunit [Oryza minuta]
          Length = 563

 Score =  404 bits (1039), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 230/522 (44%), Positives = 310/522 (59%), Gaps = 37/522 (7%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE------- 53
           CK+CGQ+   CPGHFGHI+L  P++NPLLF  L  LL   CF CH F+ +R +       
Sbjct: 65  CKSCGQQSIRCPGHFGHIELAKPLFNPLLFMSLKNLLHVTCFHCHKFRLNREQFSLSWSI 124

Query: 54  -VEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNL 112
            V++   +LEL+++GDI  AK+L+ DL  +  + ED +    S        G+       
Sbjct: 125 QVDRYTNELELLVRGDIAHAKNLE-DLGGKVLSEEDDETEATS--------GDKSARSER 175

Query: 113 KPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANL 172
           + + WTS+Q  EA     + +K +  KC +C+ KNP IS P +GW+ +     + +RAN 
Sbjct: 176 ENKTWTSIQLKEALSIFAKLMKKKQKKCAHCEKKNPIISHPIYGWL-IKDTTSSSVRANA 234

Query: 173 IRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFK 232
           I    L  +  G   +      S +D   T       PGT   ++RR    +  +     
Sbjct: 235 IANAKL--SGDGHVHDSRETGVSGLDEELTS------PGT---SSRRSTNETRRISDDTI 283

Query: 233 KQKDLFSGP--LLPSDVKDIIEKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVV 287
           K+    SG   LL ++V+ I++ LW+ E   C  + D QQ       K+ G+ +FFL  +
Sbjct: 284 KEMVASSGKKHLLTTEVESILKDLWKKEARFCMLLCDFQQNTLNVSEKRRGYEMFFLKNL 343

Query: 288 LVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQS 347
           LV P +FR  +  G  ++EHPQ VLLSKV ++N+ L  +      N   ++ RWM+LQ+S
Sbjct: 344 LVAPNRFRSSTSSGLGIVEHPQNVLLSKVQESNLALQQSIA--ASNHMDVLRRWMDLQRS 401

Query: 348 VNVLFDG-KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEI 406
           VNVL+D  K  +     A+GI QLLEKKEG+ RQK+MGKRVNYACRSVISPDPYLAVNEI
Sbjct: 402 VNVLYDSSKGLSKNEKNANGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEI 461

Query: 407 GIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISI 466
           GIPP FA RLTYPE+VTPWN  KL+++I NGA+IHPGATHY D  +  +L      R +I
Sbjct: 462 GIPPVFATRLTYPEKVTPWNARKLQEAINNGADIHPGATHYRDNNNMYKLQAAPPKRRAI 521

Query: 467 GRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQ 508
            + L  SRG+I QPGKD   EFE K+VYRHLQDGDVVLVNRQ
Sbjct: 522 AKMLPASRGSISQPGKDPKCEFESKVVYRHLQDGDVVLVNRQ 563


>gi|225678717|gb|EEH17001.1| DNA-directed RNA polymerase III subunit RPC1 [Paracoccidioides
            brasiliensis Pb03]
          Length = 1449

 Score =  404 bits (1039), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 300/960 (31%), Positives = 464/960 (48%), Gaps = 186/960 (19%)

Query: 306  EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARW--MNLQQSVNVLFD--GKNAAGQR 361
            E   T  L  ++Q+N+ L NA +N+    + I+  W  M LQ +V +  D  G   A   
Sbjct: 282  EDDLTAKLGDIIQSNMNLKNA-LNKGAPVQTIIECWDHMQLQLAVYINSDVPGLQKADFG 340

Query: 362  DMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPER 421
                G CQ L+ K+G FR  L GKRV+++ R+VISPDP L ++E+ +P   A+ +TYPE+
Sbjct: 341  KPIRGFCQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLRIDEVAVPILVAMNMTYPEQ 400

Query: 422  VTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPG 481
            VT +N  KLR  + NG +  PGA + L K        N KM +  G            P 
Sbjct: 401  VTRYNKEKLRQCVRNGTKTWPGANYVLKK------SQNFKMNLKFG-----------NPN 443

Query: 482  KDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYN 541
              ++   EG +V RH++DGD+VL NRQP+LHK SI++H V+V +  +T R++   C+ YN
Sbjct: 444  LIANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILSHFVKV-RPHRTFRLNECVCNPYN 502

Query: 542  ADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDT 601
            ADFDGDEMN+H PQ E +RAEA  ++   N  V P NG+P+ S IQD I +A +L+ K+ 
Sbjct: 503  ADFDGDEMNLHVPQTEEARAEAMELMGVKNNLVTPKNGEPIISAIQDFITAAYMLSSKNV 562

Query: 602  FLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQV 661
            F +R  F  +             +   PG R        ++ P  P+I KP+ LWTGKQV
Sbjct: 563  FYDRKTFTHVCL-----------YMLLPGTRF-------DLPP--PSILKPQMLWTGKQV 602

Query: 662  ITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSG 721
               +L    +  P  V                                      + D + 
Sbjct: 603  FN-ILMRPNKDSPVLV--------------------------------------NLDAAC 623

Query: 722  KKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTV 778
            ++ +  +G P           ++ + ++  L I  ++++ GV+DK          + + +
Sbjct: 624  REFKAPKGTP-----------RDLDANDRWLCIRNSEVMCGVMDKYTIGSGKKDSVFYVM 672

Query: 779  QELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEI 834
               YG   A   ++ LSRL   ++   GF+ G+ D+     +L++K+   ++     +E+
Sbjct: 673  LRDYGPAIAAEGMNRLSRLCARWITDLGFSIGITDVYPGDRLLEEKKELVEHAYAQCDEV 732

Query: 835  GKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINE 894
             ++     LE   G +      +  +E  + G            + S++ +      I+E
Sbjct: 733  IQKFKSGKLEKAPGCD-----EQMTMENIISG------------ILSKVRQQAGDLCISE 775

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
            L        +  N   +M TSG+KGS +N  Q+ + +GQQ + G+RV      +TLP F 
Sbjct: 776  L--------SRWNTPLIMATSGSKGSNINVAQMVALVGQQIIGGQRVQDGFQDRTLPHFP 827

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
                 P A GF+ + F +GL P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L
Sbjct: 828  KHARQPPAKGFVQNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDL 887

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGVD---------------VHQTSFISKFD-------- 1051
               YD +VR++  SIVQF YG+D +D                   S ++ FD        
Sbjct: 888  STRYDGTVRNSSSSIVQFQYGDDKLDPVDMEGNARPVNFDRTFTHSEVTTFDNSDKGLLP 947

Query: 1052 --------ALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELP 1103
                    +L A+ER      +++   G+    M R+   I      QL+++  Y+  + 
Sbjct: 948  DEIMTLCQSLLAKERA---SLDRYDLMGNRLDYMDRSDNGI-----DQLESARDYLQSIE 999

Query: 1104 DALKDNAEKF-------------------ADKFLSNEMAKQDFLKLVKHKFVLSLAQPGE 1144
            D +   AEK                      K  +  +A      LVK+K   +  +PG 
Sbjct: 1000 DYISSKAEKLRSIDGGNNNGQGGGRGINHTAKISARTLAAFITSCLVKYK--KAQVEPGH 1057

Query: 1145 PVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
             VG + +QS+GEP TQMTL TFH AG   M++T G+PR++EI+  ASK+I TPVITC L+
Sbjct: 1058 AVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN-ASKEISTPVITCQLV 1116



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C TCG    LC GHFGH+ LV+P ++   F L+ ++L+ IC  C H    +  RR   K 
Sbjct: 78  CDTCGGGLQLCSGHFGHVRLVLPAFHVGYFKLVISILQEICKDCSHILLPEPERRSFLKE 137

Query: 58  VRK 60
           +R+
Sbjct: 138 LRR 140


>gi|124486963|ref|NP_001074716.1| DNA-directed RNA polymerase III subunit RPC1 [Mus musculus]
 gi|187956633|gb|AAI51169.1| Polymerase (RNA) III (DNA directed) polypeptide A [Mus musculus]
 gi|187956659|gb|AAI51170.1| Polymerase (RNA) III (DNA directed) polypeptide A [Mus musculus]
 gi|223462631|gb|AAI51003.1| Polymerase (RNA) III (DNA directed) polypeptide A [Mus musculus]
          Length = 1390

 Score =  404 bits (1038), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 296/965 (30%), Positives = 454/965 (47%), Gaps = 164/965 (16%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG ++HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
              M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  MQMKRFLKYGNREKMAQELKF-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQ+ + +L                  P D   
Sbjct: 571  -ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILR-----------------PSDDNP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK +++                    +++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGKGEDLC-------------------VNDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 697  SIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQQ 739

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 740  PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 791

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 792  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 851

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD--- 1040
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 852  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAA 911

Query: 1041 -------VHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLD 1093
                   +     +    A+   +      +N          +M +N+ +  +     L 
Sbjct: 912  MEGKDEPLEFKRVLDNIKAVYPCQTEPALSKNDLTLTAEA--IMKKNEFLCCQ--DSFLQ 967

Query: 1094 ASNAYIMELPDALKDNAEKFA---------------DKFLSNEMAKQDFLKLVKHKFVLS 1138
                +I  + + +K   +K+                D+    ++ K  FL+  + K++ +
Sbjct: 968  EIKTFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQIEK--FLETCRDKYMRA 1025

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+
Sbjct: 1026 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPI 1084

Query: 1199 ITCPL 1203
            IT  L
Sbjct: 1085 ITAQL 1089



 Score = 47.4 bits (111), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121


>gi|258564805|ref|XP_002583147.1| DNA-directed RNA polymerase III largest subunit [Uncinocarpus reesii
            1704]
 gi|237906848|gb|EEP81249.1| DNA-directed RNA polymerase III largest subunit [Uncinocarpus reesii
            1704]
          Length = 1435

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 310/983 (31%), Positives = 474/983 (48%), Gaps = 182/983 (18%)

Query: 281  IFFLGVVLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
            +F    +  PP+  R PS G +    E   T  L  ++Q+NI L NA +N+    + I+ 
Sbjct: 266  MFLWQFIPAPPVSIR-PSVGQEGASTEDDLTAKLGDIVQSNINLKNA-INKGAPVQTIIE 323

Query: 340  RW--MNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
             W  M LQ +V +  D  G   A       GICQ L+ K+G FR  L GKRV+++ R+VI
Sbjct: 324  CWDYMQLQIAVYINSDVPGLQKADFGKPIRGICQRLKGKQGRFRGNLSGKRVDFSGRTVI 383

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMR 455
            SPDP L ++E+ +P   A+ +TYPERVT +N  KLR+ I NG ++ PGA +YL K  T  
Sbjct: 384  SPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERIRNGTKVWPGA-NYLSKRGTT- 441

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
                      +  K    R         +D   EG +V RHL+DGD+VL NRQP+LHK S
Sbjct: 442  --------FKVFLKYGNLRLM-------ADQLEEGDVVERHLEDGDIVLFNRQPSLHKLS 486

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            I++H V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA  ++   N    
Sbjct: 487  ILSHFVKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLAT 545

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 635
            P NG+P+ + IQD I +A LL+ KD F +R  F  LLY           +  +PG +   
Sbjct: 546  PKNGEPIIAAIQDFITAAYLLSSKDNFYDRKTF--LLYC---------GYMLEPGTKF-- 592

Query: 636  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
                 ++ P  PA+ KP+ LWTGKQV   ++                             
Sbjct: 593  -----DLPP--PAVLKPQMLWTGKQVFNVMM----------------------------- 616

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
                 R   D   L     ++ D + ++    +G P           ++ +  +  L I 
Sbjct: 617  -----RPSKDSPVL-----LNLDAACREFSAPKGTP-----------RDLDADDGWLCIR 655

Query: 756  KNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
             ++++ G++DK+         + + +   +G   A   ++ LSRL   +L   GF+ G+ 
Sbjct: 656  NSEIMCGLMDKSTIGSGKKDSVFYVMLRDFGPRVAAEAMNRLSRLSARWLTNMGFSIGIT 715

Query: 813  DLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
            D+             L    EI +  +         A+ D +    +  K  +  G    
Sbjct: 716  DVY-------PGDALLQAKREIVEEAY---------AQCDEVIQLFKTGKLEKAAGSDEQ 759

Query: 873  AYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS--LMTTSGAKGSKVNFQQISSH 930
               + +++  LNK      + +   E  +    K W S  +M  SG+KGS +N  Q+ + 
Sbjct: 760  QTMENQISGILNK------VRQQAGEKCIAELSK-WNSPLIMAQSGSKGSTINVAQMIAL 812

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            +GQQ + G+RV      +TLP F      P A GF+ + F +GL P E +FH ++GREGL
Sbjct: 813  VGQQIIGGQRVQNGFQDRTLPHFPKHTRQPLAKGFVRNSFFSGLTPSELFFHAISGREGL 872

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD---------- 1040
            +DTAVKT+ +GY+ R L+K+LE L   YD +VR++  +IVQF YG+D +D          
Sbjct: 873  IDTAVKTAETGYMSRRLMKSLEDLSCRYDDTVRNSSANIVQFQYGDDKLDPVDMEGKAKP 932

Query: 1041 VH--------QTSFISKFDA-------------LAARERGR-------GRGRNKFCDKGS 1072
            VH        + +  SK D              L + ER +       G G + + D+  
Sbjct: 933  VHFDRTFTHAEATTYSKDDQGLPCSEIMSLCRKLLSAERSKLNRFDLLGNGLD-YMDRSD 991

Query: 1073 HTF--------VMGRNQEMIYKKCSGQLDASNAYIMELPD---ALKDNAEKFADKFLSNE 1121
            H           +   ++ ++ K + QL       ++ PD   A+   A K + K L+  
Sbjct: 992  HGIDQLESNRDFLQSIEDYVWSK-TKQLQPVTGTDLDTPDGQMAISHTA-KLSAKTLTA- 1048

Query: 1122 MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIP 1181
                 F+     K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   M++T G+P
Sbjct: 1049 -----FVTSCLTKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVP 1103

Query: 1182 RLQEILTIASKDIKTPVITCPLL 1204
            R++EI+  ASK+I TP+ITC L+
Sbjct: 1104 RIKEIIN-ASKEISTPIITCELV 1125



 Score = 45.8 bits (107), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG     C GHFGH+ LV+P ++   F  + ++L+ IC  C        E    +R 
Sbjct: 78  CETCGGALQECNGHFGHVRLVLPAFHVGYFKRVISILQEICKDCSRILLPENERRSFLRD 137

Query: 61  L 61
           +
Sbjct: 138 M 138


>gi|126272809|ref|XP_001364762.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Monodelphis
            domestica]
          Length = 1390

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 295/962 (30%), Positives = 455/962 (47%), Gaps = 164/962 (17%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  +R  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFMRKLVRNGPEVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
              M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  MQMKRFLKYGNREKMAQELKF-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQV + +L                  P D   
Sbjct: 571  -ILVGKDEKIKVRLPPPTILKPVTLWTGKQVFSLILQ-----------------PSDENP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   G+ +++                    +++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGRGEDLC-------------------VNDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G   A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQTEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 697  SIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQQ 739

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N   +M   G+KGS +N
Sbjct: 740  PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLIMALCGSKGSFIN 791

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 792  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 851

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD--- 1040
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 852  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAA 911

Query: 1041 -------VHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLD 1093
                   +     +    A+   +      +N+         +M RN+ +  ++    L 
Sbjct: 912  MEGKDEPLEFKRVLDNIKAVFPCQSEPALSKNELVLTTES--IMKRNEFLCCQE--SFLQ 967

Query: 1094 ASNAYIMELPDALKDNAEKFA---------------DKFLSNEMAKQDFLKLVKHKFVLS 1138
                +I  + + +K   +K+                D+    ++ K  FL+  + K++ +
Sbjct: 968  EIKKFIKIVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQIEK--FLETCRDKYMRA 1025

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+
Sbjct: 1026 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPI 1084

Query: 1199 IT 1200
            IT
Sbjct: 1085 IT 1086



 Score = 47.4 bits (111), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLAECLGHYGYIDLELPCFHVGYFKAVIGVLQMICKTCCHIMLSQEE 121


>gi|149690349|ref|XP_001504046.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Equus
            caballus]
          Length = 1390

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 309/965 (32%), Positives = 461/965 (47%), Gaps = 164/965 (16%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            + M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  TQMKRFLKYGNREKMAQELKF-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPLLP-AIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L P  I KP  LWTGKQ+ +             VV R    P D   
Sbjct: 571  -ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS-------------VVLR----PSDDSP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   G+         GE+  A          ++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGR---------GEDLCA----------NDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 697  SIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQQ 739

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 740  PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 791

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 792  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 851

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 852  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD--P 909

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ-----EMIYKKCSGQLDASNAY 1098
             +   K + L   E  R     K          + +N+     E I KK +  L   +++
Sbjct: 910  AAMEGKDEPL---EFKRVLDNIKAVFPCRSEPALSKNELILTTESIMKK-NEFLCCQDSF 965

Query: 1099 IMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVLS 1138
            + E+   +K  +EK     DK+  N+    +                 FL+  + K++ +
Sbjct: 966  LQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMRA 1025

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+
Sbjct: 1026 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPI 1084

Query: 1199 ITCPL 1203
            IT  L
Sbjct: 1085 ITAQL 1089



 Score = 47.4 bits (111), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121


>gi|170106087|ref|XP_001884255.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164640601|gb|EDR04865.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1397

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 299/978 (30%), Positives = 467/978 (47%), Gaps = 176/978 (17%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVM-EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
            F    + VPP+  R PS   D    E   TV L++++  N  +           +  + +
Sbjct: 246  FIWQYLSVPPVCIR-PSVAQDGASNEDDLTVKLTEIVFTNALIRQGLAKGSPTPQ-FMEQ 303

Query: 341  WMNLQQSVNVLFDGK-----NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
            W  LQ SV +  + +     +  GQ+ +  G  Q L+ K+G FR  L GKRV+++ R+VI
Sbjct: 304  WEFLQLSVAMYINSELPGVPSQPGQKPI-RGFVQRLKGKQGRFRGNLSGKRVDFSGRTVI 362

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMR 455
            SPDP L ++E+ +P   A  LTYPERVT  N+  LR +I NG ++HPGA          R
Sbjct: 363  SPDPNLRIDEVAVPERVAKILTYPERVTTHNINALRQAIRNGPDVHPGANF------VAR 416

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
                K +R         +R AI      +D    G +V RH+ DGD++L NRQP+LHK S
Sbjct: 417  GDNKKFLRFG-------NRAAI------ADGLGIGDVVERHIIDGDIILFNRQPSLHKLS 463

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            IM H  ++ +  +T R++   C  YNADFDGDEMN+H PQ E +R EA  ++N  +  V 
Sbjct: 464  IMCHRAKI-RPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMNVKHNLVT 522

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 635
            P NG+P+ + IQD I ++ LL++KD FL+R +F Q+                        
Sbjct: 523  PRNGEPVIAAIQDFITASFLLSRKDQFLDRRQFTQIC--------------------CYF 562

Query: 636  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
            + ++ ++    P IWKP  LWTGKQ+   ++      RP                     
Sbjct: 563  ADADMQIDIPPPTIWKPVRLWTGKQIFNVLI------RP--------------------- 595

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
            +K+S+   N + K  K                     EE + E   S +   ++  L+I 
Sbjct: 596  NKKSNILVNVESKCHK--------------------WEEAKPENYPSPDLSPNDGWLVIV 635

Query: 756  KNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
             ++++ GV+DKA         +   +   YG + A   ++ L++L   +L  +GF+ G++
Sbjct: 636  NSEIMCGVMDKATVGSGKKKSIFGVIMRDYGPHEAAAAMNRLAKLCARWLANYGFSLGIN 695

Query: 813  DLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
            D++   +  R++   +  +               D  ++  +  K ++E       +  +
Sbjct: 696  DVIPGPELSRQKDILVEKA-------------YADCQDLIALAKKGKLENKPGCDQEQTL 742

Query: 873  AYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
                  + S++ +      + EL        + +N   +M T G+KGS +N  Q+ + +G
Sbjct: 743  EALISSVLSKVREAVGQICMKEL--------SRQNAPLIMATCGSKGSVINVSQMVACVG 794

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ + G RVP     ++LP F      P + GF+ + F +GLR  E+ FH ++GREGLVD
Sbjct: 795  QQIIAGHRVPNGFQDRSLPHFPKKSKEPPSKGFVRNSFYSGLRATEFLFHAISGREGLVD 854

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV-------DVHQTS 1045
            TAVKT+ +GY+QR L+K LE L   YD SVR++ G +VQF YG+DG+       D     
Sbjct: 855  TAVKTAETGYMQRRLMKALEDLTTQYDLSVRNSTGGVVQFRYGDDGLDPACLEGDAQPID 914

Query: 1046 FISKFDALAARERGRGRGRNKF-----CDK--GSHTFVMGRNQEMIYKKCSGQ-LDASNA 1097
                ++   A     GRG   F      D+  G+H F+          +C+   LD    
Sbjct: 915  LDRSWNHSLAIGGRSGRGFLPFEISELVDRELGTHRFI---------SECTAAYLDLIKG 965

Query: 1098 YIME--------------LPDALKDNAEKFADKFLS-----------------NEMAKQD 1126
            ++ +              + +AL+  AE  A+  LS                  E   + 
Sbjct: 966  FVADHIAQKVANVRKSRGMFEALEREAEWDAETDLSLGASDADKAIVDNKSKVTESQLRK 1025

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            FL L   K+V +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR++EI
Sbjct: 1026 FLDLCWVKYVKARIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI 1085

Query: 1187 LTIASKDIKTPVITCPLL 1204
            +  A+K I TP+I+C L+
Sbjct: 1086 IN-AAKAISTPIISCKLV 1102



 Score = 46.6 bits (109), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TCGQ    C GH+ +I LVVPV++   F     +L+ IC  C
Sbjct: 66  CETCGQSSVNCVGHYAYIKLVVPVFHIGYFKHTIAVLQAICKTC 109


>gi|315056651|ref|XP_003177700.1| DNA-directed RNA polymerase III subunit RPC1 [Arthroderma gypseum CBS
            118893]
 gi|311339546|gb|EFQ98748.1| DNA-directed RNA polymerase III subunit RPC1 [Arthroderma gypseum CBS
            118893]
          Length = 1429

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 307/967 (31%), Positives = 474/967 (49%), Gaps = 163/967 (16%)

Query: 282  FFLGVVLVPPIKFRLPSKGGD-SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
            F    +  PP+  R PS G + +  E   T  L  ++Q+N+ L  A +++    + I+  
Sbjct: 266  FLWQFIPAPPVPIR-PSVGQEGASTEDDLTAKLGDIVQSNLNLKMA-LDKGAPVQTIIEC 323

Query: 341  W--MNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            W  M LQ +V +  D  G      +    G+CQ L+ K+G FR  L GKRV+++ R+VIS
Sbjct: 324  WDYMQLQIAVYINSDIPGLQNTDSKKTIRGLCQRLKGKQGRFRGNLSGKRVDFSGRTVIS 383

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PDP L ++E+ +P   A+ +TYPERVT +N  KLR  I NG +  PGA + + + ++ RL
Sbjct: 384  PDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCIRNGTKTWPGANYLIKEGNSFRL 443

Query: 457  PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
                     I  +L                  EG +V RHL+DGD+VL NRQP+LHK SI
Sbjct: 444  FLKYGNLNMIANQLR-----------------EGDVVERHLEDGDIVLFNRQPSLHKLSI 486

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            ++H V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA  ++   +    P
Sbjct: 487  LSHFVKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKSNLATP 545

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
             NG+P+ + IQD I +A LL+ KD F +R  F Q+  S                  +L S
Sbjct: 546  KNGEPIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLS------------------MLDS 587

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
             +  E+ P  PA  KP+ LWTGKQV + ++      RP                   N D
Sbjct: 588  STRFELPP--PATIKPQMLWTGKQVFSVLM------RP-------------------NKD 620

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEK--LLI 754
                             K++ D + ++ ++V+G+P             ++L E    L I
Sbjct: 621  SPV--------------KVNLDAACRQLKLVKGQP-------------RDLCENDGWLCI 653

Query: 755  YKNDLVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
              ++++ GV DK+         +   +Q  +G   A   ++ LS+L   +L   GF+ G+
Sbjct: 654  RNSEMLCGVADKSTIGAGKKDNIFFVIQRDFGYAAAAEAMNRLSKLSARWLTNKGFSIGI 713

Query: 812  DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAA 871
             D+   +   R +   ++ + +                + D +   +  EK   G  D+ 
Sbjct: 714  TDVYPGESLVRLKDTLINTAFQ----------------QCDDLITAASKEKPQMGKSDSR 757

Query: 872  VAYFDMKMTSQLNK---HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQIS 928
                + ++T  LNK         I+EL        +  N   +M T G+KGS +N  Q+ 
Sbjct: 758  QTA-ENEITGILNKVRQQAGEYCISEL--------SKHNAPLIMATCGSKGSNINVSQMV 808

Query: 929  SHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGRE 988
            + +GQQ +E  RV +    +TLP F        A GF+ + F +GL P E+ FH M+GRE
Sbjct: 809  AVVGQQSIENARVSKGFQDRTLPHFARHSQHALAKGFVRNSFFSGLTPTEFLFHAMSGRE 868

Query: 989  GLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS 1048
            GL+DTAVKT+ +GY+ R L+K+LE L   YD +VRD+   I+QF YG+D +D       +
Sbjct: 869  GLIDTAVKTAETGYMSRRLMKSLEDLSTRYDNTVRDSSSFIIQFQYGDDQLDPVNMEASA 928

Query: 1049 K---FDALAARERGRGRGRNKFCDKG-SHTFVMGRNQEMI---------YKKCSGQL--D 1093
            K   FD            RN   DKG S   ++   +E+I         Y      L   
Sbjct: 929  KPVHFDRTFTHAESTTYDRN---DKGLSADEILVLCEELIAPERKKLVRYDLLGNTLAYK 985

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFL-KLVKHKFVLSL-----AQPGEP-- 1145
            A N +  +  ++ +D      +++++ + A+Q FL   +   F+L L     A+  +P  
Sbjct: 986  AGNDFDTDQWESNRDFLSSI-EEYVAAKAAQQTFLISYIPFPFILLLLVDPSARRSKPLS 1044

Query: 1146 ----VGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITC 1201
                +  + +QS+GEP TQMTL TFH AG   M++T G+PR++EI+  ASK+I TP+ITC
Sbjct: 1045 RRAWIRAIGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN-ASKEISTPIITC 1103

Query: 1202 PLLVGKT 1208
              LV KT
Sbjct: 1104 E-LVNKT 1109


>gi|449540821|gb|EMD31809.1| hypothetical protein CERSUDRAFT_144684 [Ceriporiopsis subvermispora
            B]
          Length = 1403

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 307/977 (31%), Positives = 471/977 (48%), Gaps = 170/977 (17%)

Query: 287  VLVPPIKFRLPSKGGDSVM-EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
            + VPP+  R PS   D    E   TV L++++  N  +          A+  + +W  LQ
Sbjct: 251  ISVPPVCIR-PSVAQDGASNEDDLTVKLTEIVFTNALIKQGLAKGAPTAQ-FMEQWDFLQ 308

Query: 346  QSVNVLFDGK-----NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
             SV +  + +        GQR +  G CQ L+ K+G FR  L GKRV+++ R+VISPDP 
Sbjct: 309  LSVAMYINSELPGVPTQMGQRPI-RGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPN 367

Query: 401  LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK 460
            L ++E+ +P   A  LTYPERVT  N+  LR ++ NG ++HPGA +    ++T      K
Sbjct: 368  LRIDEVAVPERVAKVLTYPERVTAHNIEVLRRAVRNGCDVHPGANY----VTTGGTGFKK 423

Query: 461  KMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHV 520
             ++         +R AI      +D    G +V RH+ DGD+VL NRQP+LHK SIM H 
Sbjct: 424  FLKFG-------NRAAI------ADGLRIGDIVERHIIDGDIVLFNRQPSLHKLSIMCHR 470

Query: 521  VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGD 580
            V+V +  +T R++   C  YNADFDGDEMN+H PQ E +R EA  +++  +  V P NG+
Sbjct: 471  VKV-RPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVTPRNGE 529

Query: 581  PLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQ 640
            P+ + IQD I ++ LL+++D F +R +F Q+            S+      ++       
Sbjct: 530  PVIAAIQDFITASFLLSQRDRFFDRRQFTQIC-----------SYLADADLKI------- 571

Query: 641  EVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSD 700
            ++ P  P IWKP+ LWTGKQ+   ++      RP                     ++ S 
Sbjct: 572  DIPP--PTIWKPQRLWTGKQIFNVLM------RP---------------------NRSSK 602

Query: 701  RKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLV 760
               N + K +K                E KP       K  + +   ++  L+I  ++++
Sbjct: 603  VLVNVESKCAK----------------EEKPNVACYPMKKPAPDLAPNDGWLVIVNSEIM 646

Query: 761  RGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL-- 815
             GV+DKA         +   +   YG + A   ++ ++++   +L   GF+ G++D++  
Sbjct: 647  CGVMDKATVGSGKKKSIFGVIMRDYGPHEAAAAMNRVAKVCARWLANFGFSLGINDVIPG 706

Query: 816  --ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVA 873
              + + KE       +  +++  +     LE + G + +   L++ I   +    D  V 
Sbjct: 707  PQLSQQKEDMVMKAYNACDDLIMKAKKGLLENKPGCDQEQ-TLEAMISSILSNVRD-QVG 764

Query: 874  YFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQ 933
               MK   +L++H +  V                    M T G+KGS +N  Q+ + +GQ
Sbjct: 765  NICMK---ELSRHNAPLV--------------------MATCGSKGSVINVCQMVACVGQ 801

Query: 934  QELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDT 993
            Q + G RVP     ++LP F      P + GF+ + F TGL P E+ FH ++GREGLVDT
Sbjct: 802  QIIAGHRVPDGFQDRSLPHFPKKSREPPSKGFVRNSFYTGLSPTEFLFHAISGREGLVDT 861

Query: 994  AVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD------------- 1040
            AVKT+ +GY+QR L+K LE L   YD SVR+A G +VQF YG+DG+D             
Sbjct: 862  AVKTAETGYMQRRLMKALEDLVTHYDSSVRNAVGGVVQFRYGDDGLDPACLEGDAQPVEF 921

Query: 1041 ----VHQTSFISK-------FDALAARERGRGRGR-NKFCDKGSHTFVMGRNQEMIYKKC 1088
                 H +S  S+       F+ L   +R     R    C       V     + I  K 
Sbjct: 922  LRAWSHASSIASRSTRGLLPFEILEFVDRELANRRFTSECMPAYLAIVRSFISDHIANKL 981

Query: 1089 SGQLDASNAYIMELPDALKDNAE-----------KFADKFLSNEMAK------QDFLKLV 1131
            +        Y     DAL+  AE             ADK   +  AK      + FL + 
Sbjct: 982  AEVRRQHGMY-----DALEREAEWDEETDLSLGASDADKATVDNKAKVTEEQLRVFLDIC 1036

Query: 1132 KHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIAS 1191
              K+V +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR++EI+  A+
Sbjct: 1037 WTKYVKAKIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-AA 1095

Query: 1192 KDIKTPVITCPLLVGKT 1208
            K I TP+I+C L+   +
Sbjct: 1096 KVISTPIISCRLVTANS 1112


>gi|345309868|ref|XP_001514706.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1
            [Ornithorhynchus anatinus]
          Length = 1489

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 295/965 (30%), Positives = 455/965 (47%), Gaps = 164/965 (16%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 347  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 404

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 405  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 464

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  +R  + NG E+HPGA     + 
Sbjct: 465  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFMRKLVRNGPEVHPGANFIQQRH 524

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
              M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 525  MQMKRFLKYGNREKMAQELKY-----------------GDIVERHLIDGDVVLFNRQPSL 567

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 568  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 626

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 627  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKTCQIIAS----------------- 669

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQV + +L                  P D   
Sbjct: 670  -ILVGKDEKIKVRLPPPTILKPVTLWTGKQVFSLILR-----------------PSDASP 711

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   G+ +++                    +++ 
Sbjct: 712  VRANLRTKG-----------------KQYCGRGEDLC-------------------VNDS 735

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G   A   +S L+RL  V+L   GF
Sbjct: 736  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQLEAADAMSRLARLAPVYLSNRGF 795

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 796  SIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQQ 838

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N   +M   G+KGS +N
Sbjct: 839  PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLVMAVCGSKGSFIN 890

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 891  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 950

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD--- 1040
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 951  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAA 1010

Query: 1041 -------VHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLD 1093
                   +     +    A+   +      +N+         +M +N+ +  +     L 
Sbjct: 1011 MEGKDEPLEFKRVLDNIKAVFPCQSEPALSKNELVLTTES--IMKKNEFLCCQ--DSFLQ 1066

Query: 1094 ASNAYIMELPDALKDNAEKFA---------------DKFLSNEMAKQDFLKLVKHKFVLS 1138
                +I  + + +K   +K+                D+    ++ K  FL+  + K++ +
Sbjct: 1067 EIKKFIKVVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQLEK--FLETCRDKYMRA 1124

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+
Sbjct: 1125 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPI 1183

Query: 1199 ITCPL 1203
            IT  L
Sbjct: 1184 ITAQL 1188



 Score = 46.2 bits (108), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S  E
Sbjct: 168 CETCGKNLADCLGHYGYIDLELPCFHVGYFKAVIGVLQMICKTCCHIMLSSEE 220


>gi|326469885|gb|EGD93894.1| DNA-directed RNA polymerase III largest subunit [Trichophyton
            tonsurans CBS 112818]
          Length = 1444

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 314/1044 (30%), Positives = 497/1044 (47%), Gaps = 184/1044 (17%)

Query: 218  RRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKA 277
            R  ++   A P   K  + +F   L P  V  +  ++   + EL S   D  +  +    
Sbjct: 212  RSFEEAKKANPDIEKHYRRVFDD-LNPLRVLKLFRRISNEDCELLSLNVDGARPEY---- 266

Query: 278  GHSIFFLGVVLVPPIKFRLPSKGGD-SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
                F    +  PP+  R PS G + +  E   T  L  ++Q+N+ L  A +++    + 
Sbjct: 267  ----FLWQFIPAPPVPIR-PSVGQEGASTEDDLTAKLGDIVQSNLNLKMA-LDKGAPVQT 320

Query: 337  IVARW--MNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACR 392
            I+  W  M LQ +V +  D  G      +    G+CQ L+ K+G FR  L GKRV+++ R
Sbjct: 321  IIECWDYMQLQIAVYINSDIPGLQNTDSKKTIRGLCQRLKGKQGRFRGNLSGKRVDFSGR 380

Query: 393  SVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLS 452
            +VISPDP L ++E+ +P   A+ +TYPERVT +N  KLR  I NG +  PGA + + + +
Sbjct: 381  TVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCIRNGTKTWPGANYLIKEGN 440

Query: 453  TMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLH 512
            + RL         I  +L                  EG +V RHL+DGD+VL NRQP+LH
Sbjct: 441  SFRLFLKYGNLNMIANQLR-----------------EGDIVERHLEDGDIVLFNRQPSLH 483

Query: 513  KPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQ 572
            K SI++H V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA  ++   + 
Sbjct: 484  KLSILSHFVKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKSN 542

Query: 573  YVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQR 632
               P NG+P+ + IQD I +A LL+ KD F +R  F Q+  S                  
Sbjct: 543  LATPKNGEPIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLS------------------ 584

Query: 633  VLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 692
            +L S +  E+ P  PA  KP+ LWTGKQV + ++      RP                  
Sbjct: 585  MLDSSTRFELPP--PATIKPQMLWTGKQVFSVLM------RP------------------ 618

Query: 693  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEK- 751
             N D                 K++ D + ++ ++V+G+P             ++L E   
Sbjct: 619  -NKDCPV--------------KVNLDAACRQLKLVKGQP-------------RDLCENDG 650

Query: 752  -LLIYKNDLVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             L I  ++++ GV DK+         +   +Q  +G   A   ++ LS+L   +L   GF
Sbjct: 651  WLCIRNSEMLCGVADKSTIGAGKKDNIFFVIQRDFGYAAAAEAMNRLSKLSARWLTNKGF 710

Query: 808  TCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGG 867
            + G+ D+   +   R +   ++ + +                + D +   +  EK   G 
Sbjct: 711  SIGITDVYPGESLVRLKDTLINTAFQ----------------QCDDLITAASKEKPQMGK 754

Query: 868  GDAAVAYFDMKMTSQLNK---HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNF 924
             D+     + ++T  LNK         I+EL        +  N   +M T G+KGS +N 
Sbjct: 755  SDSRQTA-ENEITGILNKVRQQAGEYCISEL--------SKHNAPLIMATCGSKGSNINV 805

Query: 925  QQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCM 984
             Q+ + +GQQ +E  RV +    +TLP F        A GF+ + F +GL P E+ FH M
Sbjct: 806  SQMVAVVGQQSIENARVSKGFQDRTLPHFARHSQHALAKGFVRNSFFSGLTPTEFLFHAM 865

Query: 985  AGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE---DGVDV 1041
            +GREGL+DTAVKT+ +GY+ R L+K+LE L   YD +VRD+   I+QF YG+   D V++
Sbjct: 866  SGREGLIDTAVKTAETGYMSRRLMKSLEDLSTRYDNTVRDSSSFIIQFQYGDDQLDPVNM 925

Query: 1042 HQTSFISKFDALAARERGRGRGRNKFCDKG-SHTFVMGRNQEMI---------------- 1084
              ++    FD            ++   +KG S   ++   +E+I                
Sbjct: 926  EASAKPVHFDRTFTHAESTTYDKD---EKGLSADEILALCEELIAPERKKLVRYDLLGNT 982

Query: 1085 --YKK----CSGQLDASNAYIMEL------------PDALKDNAEKFADKFLSNEMAK-- 1124
              YK      + Q +++  ++  +            P   ++  E+ A    S   A+  
Sbjct: 983  LSYKAETDFATDQWESNRDFLSSIEEYVAAKAAQLRPSDNEEGKEQMAFTHTSKISARTL 1042

Query: 1125 QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
            + F+     K++ +  +PG  +G + +QS+GEP TQMTL TFH AG   M++T G+PR++
Sbjct: 1043 KAFITSCLDKYMRAHVEPGHSIGAIGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIK 1102

Query: 1185 EILTIASKDIKTPVITCPLLVGKT 1208
            EI+  ASK+I TP+ITC  LV KT
Sbjct: 1103 EIIN-ASKEISTPIITCE-LVNKT 1124


>gi|327294643|ref|XP_003232017.1| DNA-directed RNA polymerase III largest subunit [Trichophyton rubrum
            CBS 118892]
 gi|326465962|gb|EGD91415.1| DNA-directed RNA polymerase III largest subunit [Trichophyton rubrum
            CBS 118892]
          Length = 1444

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 303/980 (30%), Positives = 475/980 (48%), Gaps = 175/980 (17%)

Query: 282  FFLGVVLVPPIKFRLPSKGGD-SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
            F    +  PP+  R PS G + +  E   T  L  ++Q+N+ L  A +++    + I+  
Sbjct: 267  FLWQFIPAPPVPIR-PSVGQEGASTEDDLTAKLGDIVQSNLNLKMA-LDKGAPVQTIIEC 324

Query: 341  W--MNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            W  M LQ +V V  D  G      +    G+CQ L+ K+G FR  L GKRV+++ R+VIS
Sbjct: 325  WDYMQLQIAVYVNSDIPGLQNTDSKKTIRGLCQRLKGKQGRFRGNLSGKRVDFSGRTVIS 384

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PDP L ++E+ +P   A+ +TYPERVT +N  KLR  I NG +  PGA + + + ++ RL
Sbjct: 385  PDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCIRNGTKTWPGANYLIKEGNSFRL 444

Query: 457  PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
                     I  +L                  EG +V RHL+DGD+VL NRQP+LHK SI
Sbjct: 445  FLKYGNLNMIANQLR-----------------EGDIVERHLEDGDIVLFNRQPSLHKLSI 487

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            ++H V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA  ++   +    P
Sbjct: 488  LSHFVKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKSNLATP 546

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
             NG+P+ + IQD I +A LL+ KD F +R  F Q+  S                  +L S
Sbjct: 547  KNGEPIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLS------------------MLDS 588

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
             +  E+ P  PA  KP+ LWTGKQV + ++      RP                   N D
Sbjct: 589  STRFELPP--PATIKPQMLWTGKQVFSVLM------RP-------------------NKD 621

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEK--LLI 754
                             K++ D + ++ ++V+G+P             ++L E    L I
Sbjct: 622  CPV--------------KVNLDAACRQLKLVKGQP-------------RDLCENDGWLCI 654

Query: 755  YKNDLVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
              ++++ GV DK+         +   +Q  +G   A   ++ LS+L   +L   GF+ G+
Sbjct: 655  RNSEMLCGVADKSTIGAGKKDNIFFVIQRDFGYAAAAEAMNRLSKLSARWLTNKGFSIGI 714

Query: 812  DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAA 871
             D+   +   R +   ++ + +                + D +   +  EK   G  D+ 
Sbjct: 715  TDVYPGESLVRLKDTLINTAFQ----------------QCDDLITAASKEKPQMGKSDSR 758

Query: 872  VAYFDMKMTSQLNK---HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQIS 928
                + ++T  LNK         I+EL        +  N   +M T G+KGS +N  Q+ 
Sbjct: 759  QTA-ENEITGILNKVRQQAGEYCISEL--------SKHNAPLIMATCGSKGSNINVSQMV 809

Query: 929  SHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGRE 988
            + +GQQ +E  RV +    +TLP F        A GF+ + F +GL P E+ FH M+GRE
Sbjct: 810  AVVGQQSIENARVSKGFQDRTLPHFARHSQHALAKGFVRNSFFSGLTPTEFLFHAMSGRE 869

Query: 989  GLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE---DGVDVHQTS 1045
            GL+DTAVKT+ +GY+ R L+K+LE L   YD +VRD+   I+QF YG+   D V++  ++
Sbjct: 870  GLIDTAVKTAETGYMSRRLMKSLEDLSTRYDNTVRDSSSFIIQFQYGDDQLDPVNMEASA 929

Query: 1046 FISKFDALAARERGRGRGRNKFCDKG-SHTFVMGRNQEMI------------------YK 1086
                FD            ++   +KG S   ++   +E+I                  YK
Sbjct: 930  KPVHFDRTFTHAESTTYDKD---EKGLSADEILALCEELIAPERKKLVRYDLLGNTLSYK 986

Query: 1087 K----CSGQLDASNAYIMEL------------PDALKDNAEKFADKFLSNEMAK--QDFL 1128
                  + Q +++  ++  +            P   ++  E+ A    S   A+  + F+
Sbjct: 987  AKNDFATDQWESNRDFLSSIEEYVAAKATQLRPSDNEEGKEQMAFTHTSKISARTLKAFI 1046

Query: 1129 KLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILT 1188
                 K++ +  +PG  +G + +QS+GEP TQMTL TFH AG   M++T G+PR++EI+ 
Sbjct: 1047 TSCLDKYMRAHVEPGHSIGAIGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN 1106

Query: 1189 IASKDIKTPVITCPLLVGKT 1208
             ASK+I TP+ITC  LV KT
Sbjct: 1107 -ASKEISTPIITCE-LVNKT 1124


>gi|395501590|ref|XP_003755175.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Sarcophilus
            harrisii]
          Length = 1390

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 296/965 (30%), Positives = 455/965 (47%), Gaps = 164/965 (16%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  +R  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFMRKLVRNGPEVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
              M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  MQMKRFLKYGNREKMAQELKY-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  PAI KP  LWTGKQV + +L                  P D   
Sbjct: 571  -ILVGKDEKIKVRLPPPAILKPVTLWTGKQVFSLILQ-----------------PSDENP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   G+ +++                    +++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGRGEDLC-------------------VNDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G   A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQIEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 697  SIGIGDVTPGQGLLKAKYELLTAGYKKCDE-----YIEALN------------TGKLQQQ 739

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  ++ + EL           N    M   G+KGS +N
Sbjct: 740  PGCTAEETLEALILKELSVIRDHAGNACLREL--------DKSNSPLTMALCGSKGSFIN 791

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 792  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 851

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD--- 1040
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 852  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAA 911

Query: 1041 -------VHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLD 1093
                   +     +    A+   +      +N+         +M RN+ +  +     L 
Sbjct: 912  MEGKDEPLEFKRVLDNIKAVFPCQSEPALSKNELVLTTES--IMKRNEFLCCQ--DSFLQ 967

Query: 1094 ASNAYIMELPDALKDNAEKFA---------------DKFLSNEMAKQDFLKLVKHKFVLS 1138
                +I  + + +K   +K+                D+    ++ K  FL+  + K++ +
Sbjct: 968  EIKKFIKVVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQIEK--FLETCRDKYMRA 1025

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+
Sbjct: 1026 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPI 1084

Query: 1199 ITCPL 1203
            IT  L
Sbjct: 1085 ITAQL 1089



 Score = 47.4 bits (111), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLAECLGHYGYIDLELPCFHVGYFKAVIGVLQMICKTCCHIMLSQEE 121


>gi|426198021|gb|EKV47947.1| hypothetical protein AGABI2DRAFT_202225 [Agaricus bisporus var.
            bisporus H97]
          Length = 1402

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 303/1014 (29%), Positives = 486/1014 (47%), Gaps = 171/1014 (16%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            L P  V D+  ++ + + EL        Q  +G+      F    + VPP+  R PS   
Sbjct: 214  LNPLKVLDLFRRVSDEDCELLGL-----QPAWGRPEE---FVWQYLSVPPVCIR-PSVAQ 264

Query: 302  DSVM-EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGK----- 355
            D    E   TV L++++  N  +    +      +  + +W  LQ SV +  + +     
Sbjct: 265  DGASNEDDLTVKLTEIVFTNALIKKGLLRGSPTPQ-FMEQWDFLQLSVAMYVNSELPGVP 323

Query: 356  NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALR 415
            +  GQ+ +  G  Q L+ K+G FR  L GKRV+++ R+VISPDP L ++E+ +P   A  
Sbjct: 324  SQPGQKPI-RGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPERVAKI 382

Query: 416  LTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLST---MRLPPNKKMRISIGRKLDT 472
            LTYPERVTP N+  LR ++ NG ++HPGA +Y+ +  T   +R P               
Sbjct: 383  LTYPERVTPHNIEMLRKAVRNGPDVHPGA-NYVSRAETKKILRFP--------------- 426

Query: 473  SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 532
            +R +I      +D    G +V R + DGD+VL NRQP+LHK SIM H  +V +  +T R+
Sbjct: 427  NRNSI------ADGLAVGDVVERQIIDGDIVLFNRQPSLHKLSIMCHRAKV-RPWRTFRL 479

Query: 533  HYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVS 592
            +   C  YNADFDGDEMN+H PQ + +RAEA  +++  +  V P NGDP+ + IQD I +
Sbjct: 480  NECVCGPYNADFDGDEMNLHVPQTDEARAEALELMSVKHNLVTPRNGDPVIAAIQDFITA 539

Query: 593  AALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKP 652
            + LL++KDTF +R +F Q+    G ++  +                  ++ P  P IWKP
Sbjct: 540  SYLLSRKDTFFDRRQFTQICCYFGDANMQI------------------DIPP--PTIWKP 579

Query: 653  EPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKT 712
              LWTGKQV   ++      RP                     +K S+   N + K +K 
Sbjct: 580  ARLWTGKQVFNVLM------RP---------------------NKNSEVLVNVECKCNKW 612

Query: 713  NKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD- 771
                           E KP E   +    + +   ++  L++  ++++ GV+DKA     
Sbjct: 613  E--------------EAKP-ENYPSRMIPANDLSPNDGWLVVVNSEIMCGVMDKATVGSG 657

Query: 772  --YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLH 829
                +   +   YG + A   ++ L++L   +L  +GF+ G++D+             + 
Sbjct: 658  KKKSIFGVILRDYGPHEAAAAMNRLAKLCARYLANYGFSLGINDV-------------IP 704

Query: 830  GSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSS 889
            G +   ++  L      D  ++  +  K ++E       +  +      + S++ +    
Sbjct: 705  GPQLKARKESLVEKAYADCQDLIALAKKGKLENKPGCNQEQTLEALISSVLSKVREAVGQ 764

Query: 890  SVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKT 949
              + EL        +  N   +M T G+KGS +N  Q+ + +GQQ + G RVP     ++
Sbjct: 765  ICMKEL--------SRHNAPLIMATCGSKGSVINVSQMVACVGQQIIAGHRVPNGFQDRS 816

Query: 950  LPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK 1009
            LP F      P + GF+ + F +GL   E+ FH ++GREGLVDTAVKT+ +GY+QR L+K
Sbjct: 817  LPHFPKKSKEPPSKGFVRNSFYSGLVATEFLFHAISGREGLVDTAVKTAETGYMQRRLMK 876

Query: 1010 NLECLKISYDYSVRDADGSIVQFCYGEDGV-------DVHQTSFISKFDALAARERGRGR 1062
             LE L   YD SVR++ G +VQF YG+DG+       D         +  ++A     GR
Sbjct: 877  ALEDLTTQYDLSVRNSTGGVVQFRYGDDGLDPACLEGDAQPIDLERTWRHVSASAGRAGR 936

Query: 1063 ---------------GRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALK 1107
                              +F ++ + T+ +   ++ I+   +  + A +     + +AL+
Sbjct: 937  SLLPFEVLELTDQTLATPRFVNEFTQTY-LDILRDFIHNNVARNI-AEHRQSRGMFEALE 994

Query: 1108 DNAEKFADKFLSNEMAKQD-----------------FLKLVKHKFVLSLAQPGEPVGLLA 1150
             + E  AD  LS      D                 FL +   K+  +  +PG  VG + 
Sbjct: 995  RDTEWDADTDLSMGATDSDLSIVDNKAKVTEEQLRRFLHVCWAKYAKARIEPGSTVGAVG 1054

Query: 1151 SQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            +QS+GEP TQMTL TFH AG   MNVTLG+PR++EI+  A+K I TP+I+C L+
Sbjct: 1055 AQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-AAKAISTPIISCKLV 1107



 Score = 48.1 bits (113), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TCGQ    C GH+ +I LVVPV++   F  + ++L+ IC  C
Sbjct: 66  CETCGQSYVHCVGHYAYIKLVVPVFHIGYFKHIISVLQAICKTC 109


>gi|330844422|ref|XP_003294125.1| RNA polymerase I, largest subunit [Dictyostelium purpureum]
 gi|325075464|gb|EGC29348.1| RNA polymerase I, largest subunit [Dictyostelium purpureum]
          Length = 1598

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/466 (47%), Positives = 303/466 (65%), Gaps = 25/466 (5%)

Query: 752  LLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTC 809
            ++I +N++V G++DK  F  + YGLVHT  ELY  + AG+LL+ L R+FT +LQ  GFTC
Sbjct: 724  VIIRQNEMVAGILDKGHFGASSYGLVHTCYELYDPDVAGSLLTILGRMFTSYLQTRGFTC 783

Query: 810  GVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGD 869
            GVDDLL+   +E+ R  +L  + + G  V   A +  + +E +  + +    KA++   +
Sbjct: 784  GVDDLLMKSKEEQFRALNLKMANDEGYNV---AAKFGNASEYNAKESREFFGKALQS--E 838

Query: 870  AAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISS 929
              VA  D  +   LN +TS  +I+ L+  G  KP  KN  SLMT SGAKGS VNF Q+S 
Sbjct: 839  REVARLDGMLKKALNTYTSK-IIDTLIPGGQQKPFPKNNFSLMTVSGAKGSVVNFSQVSC 897

Query: 930  HLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREG 989
             LGQQELEGKRVPRMVSGKTLPSF  +D + RAGGF++DRFLTG+RPQ+Y+FHCMAGREG
Sbjct: 898  LLGQQELEGKRVPRMVSGKTLPSFQAYDPSARAGGFVMDRFLTGVRPQDYFFHCMAGREG 957

Query: 990  LVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISK 1049
            L+DTAVKTSRSGYLQRCLIK+LE L I YD +VRD+DGSI+QF YGED +++ +T +++K
Sbjct: 958  LIDTAVKTSRSGYLQRCLIKHLEGLSIQYDNTVRDSDGSIIQFNYGEDSLEIGKTPYLTK 1017

Query: 1050 FDALAAR----------ERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLD---ASN 1096
            F  +A            E+  G+ +N           +    + +  K +   D    S 
Sbjct: 1018 FPIIAENYDLFKSQFDFEKLIGQLQNDEVFDYIRQMKVDNTMDPVMSKFNPSSDLGCVSE 1077

Query: 1097 AYIMELPDALKDNAEKFADKFLSN---EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
            +++ +L   +  N +K   K  SN   ++ ++DF  L+   +  S+  PGE VGLL +QS
Sbjct: 1078 SFMNQLNKYIDTNPQKLI-KTTSNRDGKITEKDFRNLMYLYYTRSMVSPGESVGLLCAQS 1136

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVI 1199
            +GEPSTQMTLNTFHLAGRGE NVTLGIPRL+EI+  AS    TP++
Sbjct: 1137 IGEPSTQMTLNTFHLAGRGEANVTLGIPRLREIIMTASSKPSTPLM 1182



 Score =  333 bits (854), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 194/465 (41%), Positives = 269/465 (57%), Gaps = 48/465 (10%)

Query: 244 PSDVKDIIEKLWENEFELCSF-------ISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRL 296
           P +V D ++KL+  E E+          +S  + + F K +     F+ V  V P ++R 
Sbjct: 280 PWEVLDHLKKLFNEEKEILDLLLGHLVPVSGSKGREFTKVSNVDSLFMRVFPVTPSRYRP 339

Query: 297 PSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD-GK 355
           P+       EHPQ      +L+AN  + ++       AK +V    +LQ  VN ++D  K
Sbjct: 340 PNFVNGRRSEHPQNSHYKGMLKANKMIRSSIEQGEGKAKYLVNSVCDLQMHVNNMYDNSK 399

Query: 356 NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALR 415
           +A+   D+A+GI Q+LEKKEGLFR+ +MGKRVNYA R+VISPD  L  NE+G+P YFA  
Sbjct: 400 SASTTNDVANGIKQILEKKEGLFRKHMMGKRVNYAARTVISPDISLETNEMGVPQYFAKT 459

Query: 416 LTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDK---LSTMRLPPNKKMRISIGRKLDT 472
           LT+P+ VT +N  +L  ++ING + +PGA    D+   L  +   P +K R+++ + L T
Sbjct: 460 LTFPQPVTSFNYNQLAQAVINGPDTYPGANFIEDENGHLINLAKEPMEK-RVALSKTLLT 518

Query: 473 S-----RGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVL-KG 526
           +     RG               K VYRHL +GD VL NRQPTLHKP IM H V+VL K 
Sbjct: 519 NHPHAPRGV-------------NKKVYRHLLNGDYVLANRQPTLHKPGIMGHKVKVLGKN 565

Query: 527 EKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLI 586
           EKTLRMHY+NCSTYNADFDGDEMN+HFPQ  ++ AE   I   N QY+ P NG PLR LI
Sbjct: 566 EKTLRMHYSNCSTYNADFDGDEMNIHFPQSLLASAEIREICANNYQYLVPRNGAPLRGLI 625

Query: 587 QDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLL 646
           QDHI++  LLTK+DT   + +F  +LY+   S +                 ++  ++   
Sbjct: 626 QDHILTGVLLTKRDTLFTKADFQSILYACLWSVN-----------------TKHPIVTPP 668

Query: 647 PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKT 691
           P I+KP PLW+GKQ+I+A L H+T GR P  +E   K+P   + T
Sbjct: 669 PCIFKPVPLWSGKQLISAALTHLTIGRVPLNLEAPSKIPIKMWGT 713



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 50/75 (66%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC      CPGHFGHI+L +P YNP+ F  ++ LLK  CF CHHFK   + + +   +
Sbjct: 65  CSTCSLDFIECPGHFGHIELAIPCYNPVCFQTIFKLLKNKCFNCHHFKHGSKVINQFTEE 124

Query: 61  LELIIKGDIIAAKSL 75
           L L+++G+++AAK+L
Sbjct: 125 LNLLLRGNVVAAKNL 139


>gi|409075371|gb|EKM75752.1| hypothetical protein AGABI1DRAFT_79519 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1402

 Score =  401 bits (1031), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 301/1014 (29%), Positives = 482/1014 (47%), Gaps = 171/1014 (16%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            L P  V D+  ++ + + EL        Q  +G+      F    + VPP+  R PS   
Sbjct: 214  LNPLKVLDLFRRVSDEDCELLGL-----QPAWGRPEE---FVWQYLSVPPVCIR-PSVAQ 264

Query: 302  DSVM-EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGK----- 355
            D    E   TV L++++  N  +    +      +  + +W  LQ SV +  + +     
Sbjct: 265  DGASNEDDLTVKLTEIVFTNALIKKGLLRGSPTPQ-FMEQWDFLQLSVAMYVNSELPGVP 323

Query: 356  NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALR 415
            +  GQ+ +  G  Q L+ K+G FR  L GKRV+++ R+VISPDP L ++E+ +P   A  
Sbjct: 324  SQPGQKPI-RGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPERVAKI 382

Query: 416  LTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLST---MRLPPNKKMRISIGRKLDT 472
            LTYPERVTP N+  LR ++ NG ++HPGA +Y+ +  T   +R P               
Sbjct: 383  LTYPERVTPHNIEMLRKAVRNGPDVHPGA-NYVSRAETKKILRFP--------------- 426

Query: 473  SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 532
            +R +I      +D    G +V R + DGD+VL NRQP+LHK SIM H  +V +  +T R+
Sbjct: 427  NRNSI------ADGLAVGDVVERQIIDGDIVLFNRQPSLHKLSIMCHRAKV-RPWRTFRL 479

Query: 533  HYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVS 592
            +   C  YNADFDGDEMN+H PQ + +RAEA  +++  +  V P NGDP+ + IQD I +
Sbjct: 480  NECVCGPYNADFDGDEMNLHVPQTDEARAEALELMSVKHNLVTPRNGDPVIAAIQDFITA 539

Query: 593  AALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKP 652
            + LL++KDTF +R +F Q+    G ++  +                  ++ P  P IWKP
Sbjct: 540  SYLLSRKDTFFDRRQFTQICCYFGDANMQI------------------DIPP--PTIWKP 579

Query: 653  EPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKT 712
              LWTGKQV   ++                  P    +   N +              K 
Sbjct: 580  ARLWTGKQVFNVLMR-----------------PNKISEVLVNVE-------------CKC 609

Query: 713  NKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD- 771
            NK             E KP E   +    + +   ++  L++  ++++ GV+DKA     
Sbjct: 610  NKWE-----------EAKP-ENYPSRMIPANDLSPNDGWLVVVNSEIMCGVMDKATVGSG 657

Query: 772  --YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLH 829
                +   +   YG + A   ++ L++L   +L  +GF+ G++D+             + 
Sbjct: 658  KKKSIFGVILRDYGPHEAAAAMNRLAKLCARYLANYGFSLGINDV-------------IP 704

Query: 830  GSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSS 889
            G +   ++  L      D  ++  +  K ++E       +  +      + S++ +    
Sbjct: 705  GPQLKARKESLVEKAYADCQDLIALAKKGKLENKPGCNQEQTLEALISSVLSKVREAVGQ 764

Query: 890  SVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKT 949
              + EL        +  N   +M T G+KGS +N  Q+ + +GQQ + G RVP     ++
Sbjct: 765  ICMKEL--------SRHNAPLIMATCGSKGSVINVSQMVACVGQQIIAGHRVPNGFQDRS 816

Query: 950  LPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK 1009
            LP F      P + GF+ + F +GL   E+ FH ++GREGLVDTAVKT+ +GY+QR L+K
Sbjct: 817  LPHFPKKSKEPPSKGFVRNSFYSGLVATEFLFHAISGREGLVDTAVKTAETGYMQRRLMK 876

Query: 1010 NLECLKISYDYSVRDADGSIVQFCYGEDGV-------DVHQTSFISKFDALAARERGRGR 1062
             LE L   YD SVR++ G +VQF YG+DG+       D         +  ++A     GR
Sbjct: 877  ALEDLTTQYDLSVRNSTGGVVQFRYGDDGLDPACLEGDAQPIDLERTWRHVSASAGRAGR 936

Query: 1063 ---------------GRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALK 1107
                              +F ++ + T+ +   ++ I+   +  + A +     + +AL+
Sbjct: 937  SLLPFEVLELTDQTLATPRFVNEFTQTY-LDILRDFIHNNVARNI-AEHRQSRGMFEALE 994

Query: 1108 DNAEKFADKFLSNEMAKQD-----------------FLKLVKHKFVLSLAQPGEPVGLLA 1150
             + E  AD  LS      D                 FL +   K+  +  +PG  VG + 
Sbjct: 995  RDTEWDADTDLSMGATDSDLSIVDNKAKVTEEQLRKFLHVCWAKYAKARIEPGSTVGAVG 1054

Query: 1151 SQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            +QS+GEP TQMTL TFH AG   MNVTLG+PR++EI+  A+K I TP+I+C L+
Sbjct: 1055 AQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-AAKAISTPIISCKLV 1107



 Score = 48.1 bits (113), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TCGQ    C GH+ +I LVVPV++   F  + ++L+ IC  C
Sbjct: 66  CETCGQSYVHCVGHYAYIKLVVPVFHIGYFKHIISVLQAICKTC 109


>gi|343427900|emb|CBQ71425.1| probable RPO31-DNA-directed RNA polymerase III, 160 KD subunit
            [Sporisorium reilianum SRZ2]
          Length = 1400

 Score =  401 bits (1030), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 304/972 (31%), Positives = 467/972 (48%), Gaps = 161/972 (16%)

Query: 287  VLVPPIKFRLPSKGGDSVM-EHPQTVLLSKVLQANIYLANAYVN--QPDNAKVIVARWMN 343
            + VPP+  R PS   D    E   T+ L++V+  N  L    V   +      +V +W  
Sbjct: 253  ICVPPVCIR-PSVAQDGATNEDDVTIKLTEVIFTNSLLKLGLVKGGKGTTTSQLVQQWEF 311

Query: 344  LQQSVNVLFDGKNAA-----GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
            LQ +V +  + +        GQ+  + G CQ L+ K+G FR  L GKRV+++ R+VI PD
Sbjct: 312  LQLTVALYINSELPGVPVQPGQKP-SRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVIGPD 370

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLD-KLSTMRLP 457
            P L ++E+ +P   A  LTYPERV   N+ +LR ++ NG ++HPGA + +D K    R  
Sbjct: 371  PNLKIDEVAVPQRVAKILTYPERVFEHNIEQLRQAVRNGTDVHPGANYLMDGKTGFKRFL 430

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIM 517
                MR  + +KL                   G +V RH++DGD+VL NRQP+LHK SIM
Sbjct: 431  KFPGMREELAQKLRV-----------------GDIVERHIRDGDIVLFNRQPSLHKLSIM 473

Query: 518  AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
            +H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +R EA  ++   +  V P 
Sbjct: 474  SHRAKI-RPWRTFRLNECACNPYNADFDGDEMNMHVPQTEEARTEATVLMGVKHNLVTPR 532

Query: 578  NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISR 637
            NG+P+ + IQD I ++ L++K+D F +R +F Q+   S  + + L               
Sbjct: 533  NGEPIIAAIQDFITASYLISKRDRFFDRAQFSQI--CSYFADADL--------------- 575

Query: 638  SEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADK 697
              Q  LP  PAI KP  LWTGKQV++ ++      RP                       
Sbjct: 576  --QIDLPP-PAIMKPVRLWTGKQVMSCLI------RP----------------------- 603

Query: 698  QSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN 757
              +RK      L    +  +  +G       G P           K+   ++  L+I  +
Sbjct: 604  --NRKSPHLVNLEAQCRTFEKPTG-------GHP-----------KDMSPNDGWLVIVNS 643

Query: 758  DLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
            +++ GV DK+   D     +   +   YG + A T ++ L++    +L   GF+ G++D+
Sbjct: 644  EVMCGVFDKSTVGDGKKNSVFGVMLRDYGPDAAITAMNRLAKTCARWLANQGFSLGINDV 703

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
            +   +    +   +  +       + E L+L              IEKA  G  +     
Sbjct: 704  IPGPNLRDNKDAKVEAA-------YTECLDL--------------IEKAKHGKLENLPGC 742

Query: 875  FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
               +    +     S V +++    + + +  N   +M   G+KGSK+N  Q+ + +GQQ
Sbjct: 743  DQEQTLENMISGVLSGVRSDVGEICMTELSRHNAPLVMAVCGSKGSKINVAQMVACVGQQ 802

Query: 935  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
             + G RVP     ++LP F      P + GF+ + F +GL P E+ FH ++GREGLVDTA
Sbjct: 803  IIAGSRVPNGFQDRSLPHFPKKSKDPPSKGFVRNSFFSGLSPTEFLFHAISGREGLVDTA 862

Query: 995  VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF----ISKF 1050
            VKT+ +GY+QR L+K LE L   YD SVR++ G +VQF YG+DG+D  +       I  F
Sbjct: 863  VKTAETGYMQRRLMKALEDLSTHYDLSVRNSVGGVVQFIYGDDGLDPAELEGNAMPIEPF 922

Query: 1051 ----DALAARERGRGRGRNKF-----CDK--GSHTFVMGRNQ-----------EMIYKKC 1088
                  LA      GRG   +      D+  GS  FV    Q           E +YK+ 
Sbjct: 923  RLWRHCLAITHHIEGRGLYPYEIMEVVDRELGSERFVKTCTQKYLDSVREFLSENVYKRA 982

Query: 1089 SGQLDASNAYIMELPD------------ALKDNAEKFADKFLSNEMAKQDFLKLVKHKFV 1136
                 A   Y  E  +            A +D      +K    ++A  +FL+    K++
Sbjct: 983  VQMRSAFGMYGAEEREEHWDEHTDLSLGADRDQWAIVNNKTKIKQVAILEFLQQCYKKYM 1042

Query: 1137 LSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKT 1196
             +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR++EI+  A+K I T
Sbjct: 1043 KAKIEPGSAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-AAKSINT 1101

Query: 1197 PVITCPLLVGKT 1208
            P+I   L+  K+
Sbjct: 1102 PIIEAKLVSEKS 1113



 Score = 42.4 bits (98), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C+TC  +   C GH+G+I LV+PV++   F     +L+ IC  C      +  RR+  K 
Sbjct: 68  CETCHLKMADCVGHYGYIKLVLPVFHVGFFKHTVAILQSICKNCATVLLEEPDRRKFLKR 127

Query: 58  VRKLEL 63
            RK  L
Sbjct: 128 FRKPNL 133


>gi|452982836|gb|EME82594.1| hypothetical protein MYCFIDRAFT_187946 [Pseudocercospora fijiensis
            CIRAD86]
          Length = 1442

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 317/1059 (29%), Positives = 487/1059 (45%), Gaps = 169/1059 (15%)

Query: 193  ASSDVDAPETHSFNGTFPGT--QDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDI 250
            A S V   E  +F  TF      D    RH K +              +  L P  V +I
Sbjct: 200  AKSKVKPQEMQAFERTFEEAIKADKDVERHMKRA--------------TDDLTPLRVLNI 245

Query: 251  IEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQT 310
            ++K+   + EL            G +  H I+    +  PP+  R       +  E   T
Sbjct: 246  LKKVPNADVELLGM-----DPHSGGRPEHMIWTH--IPAPPVAIRPSVAQETASTEDDIT 298

Query: 311  VLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMA-----S 365
              L  ++Q N  +A A ++   +   ++  W  LQ  + +  DG      RD A      
Sbjct: 299  NKLGDIIQINGLIA-ATLHAGQHLSKVMDMWEFLQVQIAMYIDGNLPGLGRDSAYGKAMR 357

Query: 366  GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPW 425
            G CQ L+ K+G FR  L GKRV+++ R+VISPDP L+++E+ +P   A+ +TYPERVT  
Sbjct: 358  GFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPSRVAVNMTYPERVTKH 417

Query: 426  NVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSD 485
            N+ KL+  +  G ++HPGA + +      RL     +R+ +G++ D  + A        D
Sbjct: 418  NIEKLKACVGRGDKVHPGANYIIKGRDKRRL----VLRM-VGQRGDLKKVA--------D 464

Query: 486  NEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
                G  V RHL+DGD+VL NRQP+LHK SI++H  ++ +  +T R++   C+ YNADFD
Sbjct: 465  QLEIGDTVERHLEDGDIVLFNRQPSLHKLSILSHRAKI-RPWRTFRLNECVCNPYNADFD 523

Query: 546  GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
            GDEMN+H PQ E +R EA  ++   +    P NG P+ + IQD I  A L+++KD F +R
Sbjct: 524  GDEMNLHVPQTEEARTEATELMGVKHNLATPKNGTPIIAAIQDFITGAYLVSQKDLFFSR 583

Query: 606  DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
             +F Q++     +      +TG+          E  +    PAIWKP+ LWTGKQ    V
Sbjct: 584  RQFTQVVGFMYNAMQVKDPYTGE----------EYPIQIPPPAIWKPQCLWTGKQ----V 629

Query: 666  LNHITRGRP--PFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKK 723
             N + +  P  P  V    KL Q    TR                            G  
Sbjct: 630  WNLLIKPHPKYPVNVNLEAKLKQYAPPTR---------------------------KGDI 662

Query: 724  KEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQE 780
             ++V+                   ++  L+I  ++++ G  DKA   D     + + +  
Sbjct: 663  PDMVD-------------------TDSYLVIRNSEVMCGAFDKATIGDGKKDSVFYVILR 703

Query: 781  LYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHL 840
             +G   A   ++ L++L   +L   GF+ G+ D+    D   +RK  L           +
Sbjct: 704  DFGPEYAAAAMTRLAKLSARWLGEQGFSIGISDVY-PSDTLTKRKQAL-----------V 751

Query: 841  EALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGL 900
            +A   +    ID  K K ++E++     +  +      + S++ +    +   EL     
Sbjct: 752  DAAYKQCDEIIDKYK-KGKLERSAGCDEEQTMEILLSGILSKVRQQCGDACFAEL----- 805

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
               +  N    M   G+KGS +N  Q+ + +GQQ + GKRV      +TLP F      P
Sbjct: 806  ---SKFNAPMTMAKCGSKGSNINVSQMVAAVGQQIIGGKRVLEGFQDRTLPHFPKASRDP 862

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
             A GF+ D F +GL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD 
Sbjct: 863  LAKGFVFDSFFSGLTPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDL 922

Query: 1021 SVRDADGSIVQFCYGEDGVD-------------------------------VHQTSFISK 1049
            +VR++   +VQ  +G+DG+D                               + Q+   + 
Sbjct: 923  TVRNSSSGVVQMKFGDDGLDPVDMEGSAKPVNFERTWMHSITSTWDNAERALTQSEIETY 982

Query: 1050 FDALAARERGR-GRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQ-LDASNAYIMELPDALK 1107
             +    +ER + GR      D+    +   +       + S Q LD    +IM+    + 
Sbjct: 983  VNTTLNKERAKLGRFTE---DRKPLPYDDDKPMSTDQSEYSRQFLDVVTNFIMDKVSKMV 1039

Query: 1108 DNAEKFADK---FLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLN 1164
                +  +    F  ++ A   FL L  HKF  S  + G  VG + +QS+GEP TQMTL 
Sbjct: 1040 STQNRLKNSDGVFKLSQAALDCFLHLCLHKFEKSKTEAGHAVGAVGAQSIGEPGTQMTLK 1099

Query: 1165 TFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            TFH AG   M++T G+PR++EI+  ASK I TPVITC L
Sbjct: 1100 TFHFAGVAGMSITQGVPRIKEIIN-ASKVISTPVITCAL 1137


>gi|428186682|gb|EKX55532.1| hypothetical protein GUITHDRAFT_156792 [Guillardia theta CCMP2712]
          Length = 1281

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 301/938 (32%), Positives = 457/938 (48%), Gaps = 168/938 (17%)

Query: 289  VPPIKFRLPSKG---GDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
            VPP   R PS     G    E   TV+LS++++A+  + +  +++  +   I+  W  LQ
Sbjct: 224  VPPCCIR-PSVAMGVGAGSNEDDLTVILSEIVKASESIQDT-MDKGGSIANIMDCWGFLQ 281

Query: 346  QSVNVLFDGK----------NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
              +   F+ +           ++G+R +  G  Q L+ K+G FR  L GKRV+++ R+VI
Sbjct: 282  LKIAHYFNSELPGVQQQLTMKSSGKRKIMRGFAQRLKGKQGRFRGNLSGKRVDHSGRTVI 341

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMR 455
            SPDP L V ++ +P + A  LTYPERVT  N+V+L+ +I NG +I PGATH L       
Sbjct: 342  SPDPNLHVRQVAVPVHMAKILTYPERVTSHNLVRLKKAIDNGPDIWPGATHIL------- 394

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKP 514
            L  N   R  +             P K + NE   G +V RHL D DVVL NRQP+LH+ 
Sbjct: 395  LQGNSNDRKDLR----------YYPKKIAKNELRIGDIVERHLIDDDVVLFNRQPSLHRI 444

Query: 515  SIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYV 574
            SIMAH  +VLK  +TLR +   C+ YNADFDGDEMN+H PQ E +RAEA  ++   N   
Sbjct: 445  SIMAHRAKVLKW-RTLRFNECVCNPYNADFDGDEMNLHVPQTEEARAEAIELMGVVNNLC 503

Query: 575  RPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVL 634
             P +G  + +  QD +  + L+++K+TF +     Q+ Y    +      F  +P     
Sbjct: 504  TPKDGSIMIAATQDFLTGSYLISRKNTFFHE---AQMWYYCSFTCDAKEDFELEP----- 555

Query: 635  ISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFN 694
                        PAI KP  LWTGKQ+++ +L      +P                    
Sbjct: 556  ------------PAIIKPMRLWTGKQLLSMLL------KP-------------------- 577

Query: 695  ADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELS-EEKLL 753
                   +KN +   +    +   + G+ +         EK+++ +  K + +   +  +
Sbjct: 578  -------RKNTRSLETDVEVLVNTELGESQ--------YEKKSDNDIDKGRYMCPHDNYV 622

Query: 754  IYKN-DLVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTC 809
             ++N +L+ G + K+         L +T+     + TA   ++ L++L + ++ +HGFT 
Sbjct: 623  CFRNSELMCGNLGKSTLGAGNKNSLFYTLLRDCDAETAADRMTKLAKLCSRWMGLHGFTF 682

Query: 810  GVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAM---RG 866
            G++D++                 E  K+   EA++          K+K + +K +   R 
Sbjct: 683  GIEDVM---------------PTEPIKKAKAEAMQ----------KVKDKCDKLIADYRA 717

Query: 867  GGDAAVAYFDMKMT-SQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQ 925
            G    V   D++++  Q+       V N + S    +    N + +M    +KGS  N  
Sbjct: 718  GKLQRVPGCDLELSLEQMVGKELDDVRNLVASAAKKELHYDNKVLVMALCKSKGSNDNIS 777

Query: 926  QISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMA 985
            Q+   LGQQ+L G R+P    G+TLP F  +   P A GF+ + F TGL P E++ H M 
Sbjct: 778  QMIGCLGQQKLGGSRIPNGFIGRTLPHFEMYAKEPAAKGFVENSFFTGLNPTEFFMHTMT 837

Query: 986  GREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTS 1045
            GREGLVDTAVKT+  GY+ R L+K+LE L I YD +VR++ G IVQF YG+DG+D     
Sbjct: 838  GREGLVDTAVKTAECGYMARRLMKSLEDLSIHYDSTVRNSHGCIVQFRYGDDGLDP---- 893

Query: 1046 FISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDA 1105
                       E   G+  N               + MI + C+            L   
Sbjct: 894  --------MLMEDDDGKPINM--------------KRMIQRSCA------------LLGC 919

Query: 1106 LKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNT 1165
              D     A+  L  E   + FL  +  ++  ++A+PG  VG L +QS+GEP TQMTL T
Sbjct: 920  YGDEERSPANFTLMTEEQLKHFLDEIICRYRRAVAEPGSAVGALGAQSIGEPGTQMTLKT 979

Query: 1166 FHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            FH AG   MNVTLG+PR++EI+  ASK I TPV+  PL
Sbjct: 980  FHFAGIASMNVTLGVPRIKEIIN-ASKIISTPVVEVPL 1016



 Score = 42.4 bits (98), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 25/44 (56%)

Query: 1  CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
          C TC +    C GHFG++ L +PV++   F  + T+L  IC  C
Sbjct: 36 CTTCHEPLQTCAGHFGYLKLTLPVFHQGYFKAIITILSCICKSC 79


>gi|156043073|ref|XP_001588093.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|154694927|gb|EDN94665.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1459

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 322/1043 (30%), Positives = 473/1043 (45%), Gaps = 199/1043 (19%)

Query: 243  LPSDVKDIIEKLWE----NEFELCSFISDMQQQGFGKKAGH-SIFFLGVVLVPPIKFRLP 297
            L   VK + E L      N F+L +  SD +  G     G   +F    V  PPI  R P
Sbjct: 220  LEKHVKKVYEDLHPLRVLNLFKLIT-PSDCELLGINPAEGRPEMFLWQFVPAPPICIR-P 277

Query: 298  SKGGDS-VMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ----QSVNVLF 352
            S   D    E   T  L++++  +  L  A + +    + I+ +W  LQ      VN   
Sbjct: 278  SVAQDGGSNEDDLTAKLAEIVNMS-SLIRAALQKGQAVQTIMEQWDFLQLQIAMYVNSDV 336

Query: 353  DGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYF 412
             G    G      G CQ L+ K+G FR  L GKRV+++ R+VISPDP L ++E+ +P   
Sbjct: 337  PGLQQPGFGKAIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLGIDEVAVPILV 396

Query: 413  ALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDT 472
            A  LTYPERV   N+ KLR  +ING  +HPGA   + K S      N K+ +   ++   
Sbjct: 397  AKNLTYPERVQRQNIEKLRKCVINGPNVHPGAQQIVKKDS------NHKISLKFAKR--- 447

Query: 473  SRGAIVQPGKDSDNEFE----GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK 528
                        DNE +    G +V RHL+DGD+VL NRQP+LHK SIM+H  ++ +  +
Sbjct: 448  ------------DNEAKFLKIGDVVERHLEDGDIVLFNRQPSLHKLSIMSHYAKI-RPWR 494

Query: 529  TLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQD 588
            T R++   C+ YNADFDGDEMN+H PQ E +R EA N++   N    P NG+P+ S  QD
Sbjct: 495  TFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAINLMGVKNNLSTPKNGEPIISATQD 554

Query: 589  HIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPA 648
             I +A LL+ K+ F +R  F  +                      ++  +    LP  PA
Sbjct: 555  FITAAYLLSSKENFFDRKTFTNICM-------------------YMVDSNLHLQLP-PPA 594

Query: 649  IWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
            I KP+ LWTGKQV + ++      RP                                  
Sbjct: 595  ILKPQALWTGKQVFSILM------RP---------------------------------- 614

Query: 709  LSKTNKMHKDKSGKKKEVVEG--KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
             +K + +  +   K ++ V     PG   + E N        +  L+I  ++++ G++DK
Sbjct: 615  -NKQDNILVNVDAKCRDFVPNMVPPGYANDMEAN--------DGWLVIRNSEVMCGLMDK 665

Query: 767  AQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERE 823
            +         + + +   YG + A   ++ LS+L   +L   GF+ G+ D          
Sbjct: 666  STVGSGKKDSIFYVILRDYGPDAAVVAMNRLSKLSARYLTNMGFSIGISD---------- 715

Query: 824  RKNHLHGSEEIGK-RVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQ 882
                ++ SEE+ K +  L A    +  ++      + +EK+    G +     + K++ +
Sbjct: 716  ----VYPSEELNKSKARLIAAAYAECEQLIESFKNNTLEKST---GLSMEETLEAKLSGK 768

Query: 883  LNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
            L     S V      E L      +   +M  SG+KGS +N  Q+ + +GQQ + G RV 
Sbjct: 769  L-----SQVRGAAGKECLRTLYASSSPLVMANSGSKGSAINVAQMVALVGQQIIGGSRVQ 823

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F      P A GF+ + F TGL P E+ FH M+GREGLVDTAVKT+ +GY
Sbjct: 824  EGFQDRTLPHFPKHSKQPPAKGFVANSFFTGLTPYEFIFHAMSGREGLVDTAVKTAETGY 883

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD---------------------- 1040
            + R L+K+LE L   YD +VR + G IVQF +G DG+D                      
Sbjct: 884  MSRRLMKSLEDLSTQYDDTVRTSGGGIVQFQFGADGLDPLDMEGNAVPVNFKRTWTQAET 943

Query: 1041 --------------------VHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRN 1080
                                 H  +F +KF     R  G   G +   D G      GR 
Sbjct: 944  LTWDNEERSLLPFEVTGQCTEHLATFKAKFSRFGLRN-GEPLGYDDASDYGVDEHDGGRE 1002

Query: 1081 QEMIYKKCSGQLDASNAYIME---LPDALKD----------NAEKFADKFLSNEMAK--- 1124
                  K  G+  +  A       L D ++D          N E    +   N++AK   
Sbjct: 1003 FLAAVNKFIGEKASHMAKARTKAGLHDFVQDPKVTGILYDENDENDESRAYVNQVAKVSK 1062

Query: 1125 ---QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIP 1181
               + F +L   K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   MN+T G+P
Sbjct: 1063 TTLKKFCELCLEKYSRAKVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMNLTAGVP 1122

Query: 1182 RLQEILTIASKDIKTPVITCPLL 1204
            R++EI+  ASK I TP + CPLL
Sbjct: 1123 RIKEIIN-ASKTIATPFVKCPLL 1144



 Score = 42.7 bits (99), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C+TC +    C GHFGH+ L +P ++     L+  +L+ IC  C       A RR+  + 
Sbjct: 76  CETCDKGLQDCNGHFGHVRLPLPAFHIGYLKLIIMILQNICKTCARVLLTDAERRQFLRE 135

Query: 58  VRK 60
           +RK
Sbjct: 136 LRK 138


>gi|156370189|ref|XP_001628354.1| predicted protein [Nematostella vectensis]
 gi|156215328|gb|EDO36291.1| predicted protein [Nematostella vectensis]
          Length = 1398

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 312/1004 (31%), Positives = 469/1004 (46%), Gaps = 175/1004 (17%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLP---- 297
            L P  V DI +++ E ++ L  F   M          H +  +  +L PP+  R      
Sbjct: 218  LNPLRVLDIFQQIPEQDYPLLMFSPGMSHP-------HDLI-MRRILAPPVCIRPSVISE 269

Query: 298  ----SKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD 353
                S   D  M+  + V L+ V++ +  +           ++I+  W  LQ    +  +
Sbjct: 270  LASGSNEDDVTMKLTEIVFLNDVIRKHRSVGA-------KVQMIMEDWDFLQLQCALYIN 322

Query: 354  GKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGI 408
             + +    +M       G  Q L+ K+G FR  L GKRV+++ R+VISPDP L ++++ +
Sbjct: 323  SEMSGIPLNMQPKKGTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVAV 382

Query: 409  PPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIG- 467
            P + A  LTYPERVT  N+  ++  ++NGA+ HPGA +++ +  T     N K  +  G 
Sbjct: 383  PIHVAKVLTYPERVTQSNLKLMKQLVLNGADQHPGA-NFIQQRET-----NTKRFLKYGN 436

Query: 468  RKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 527
            RKL   +  I            G  V RHL DGDVVL NRQP+LHK SIMAH+  V +  
Sbjct: 437  RKLIAKQLKI------------GDTVERHLIDGDVVLFNRQPSLHKLSIMAHLATV-RPH 483

Query: 528  KTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQ 587
            +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++   N  V P NG+PL + IQ
Sbjct: 484  RTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALTLMGVKNNLVTPRNGEPLIAAIQ 543

Query: 588  DHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLP 647
            D I  A LLT KD FL+R    QL      +S   G  TG           + E+ P  P
Sbjct: 544  DFITGAYLLTYKDVFLDRSHIAQL-----CASILAGKDTG----------VDIELPP--P 586

Query: 648  AIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKG 707
            AI KP  LWTGKQV + +L                  P    K R N             
Sbjct: 587  AIHKPCRLWTGKQVFSVLLR-----------------PNPKVKVRMNL------------ 617

Query: 708  KLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKA 767
                          + K+   G             ++  +++  ++I+ +DL+ G +DKA
Sbjct: 618  ------------RARGKQYTSG-------------EDLCVNDSFVVIHNSDLMCGALDKA 652

Query: 768  QF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL----ILKDK 820
                 +   + + +   +G   A   +  ++R+   FL   GF+ G+ D+     +L+ K
Sbjct: 653  VLGSGSKNSVFYVLLRDFGQQVAADAMWRVARICPFFLSNRGFSIGIGDVTPGHGLLQAK 712

Query: 821  ERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMT 880
            E          E+          E  +G      KL+++   +     +A +    +K  
Sbjct: 713  EDLLSTGYSKCEDYIN-------EFREG------KLQTQPGCSAEDTLEAVI----LKEL 755

Query: 881  SQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKR 940
            S +  H   + + EL           N    M   G+KGS +N  Q+ + +GQQ + GKR
Sbjct: 756  SVIRDHAGKACLREL--------HKSNTPLTMAVCGSKGSFINISQMIACVGQQAISGKR 807

Query: 941  VPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRS 1000
            +P     ++LP F      P A GF+ + F +GL P E++FH M GREGLVDTAVKT+ +
Sbjct: 808  IPDGFEDRSLPHFKRHSKLPAAKGFVKNSFFSGLTPTEFFFHAMGGREGLVDTAVKTAET 867

Query: 1001 GYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTS-------FISKFDAL 1053
            GY+QR L+K+LE L   YD +VR + G IVQF YG DG+D            F   F  +
Sbjct: 868  GYMQRRLVKSLEDLSTQYDITVRTSTGDIVQFRYGGDGLDPTDMEGKDKPLDFSRVFSHI 927

Query: 1054 AA-----RERGRGRGRNKFCDKG---SHTFVMGRNQ-----EMIYKKCSGQLDASNAYIM 1100
                    ER     R +   KG   S  F M             +  + +++  +A   
Sbjct: 928  QCNHVMREERPLTSSRAREIAKGIIESSEFEMCSKDFKTETSDFVENLAKKIEKIHAQYG 987

Query: 1101 ELPDALKDNAEKFADKF-LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPST 1159
             +P ++  N  K  D      E   + FL + + K++ +  +PG  VG + +QS+GEP T
Sbjct: 988  VVPHSITSN--KIVDYVNRCTETQLKLFLSMCREKYLRARMEPGSAVGAICAQSIGEPGT 1045

Query: 1160 QMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            QMTL TFH AG   MN+TLG+PR++EI+  AS+ I TP+I+  L
Sbjct: 1046 QMTLKTFHFAGVASMNITLGVPRIKEIIN-ASRKISTPIISAQL 1088



 Score = 40.4 bits (93), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TCG+    C GH+G+IDL +PV++   F     +L+ +C  C
Sbjct: 69  CETCGKGLADCVGHYGYIDLELPVFHVGHFRSTIIILQCVCKNC 112


>gi|302500232|ref|XP_003012110.1| hypothetical protein ARB_01618 [Arthroderma benhamiae CBS 112371]
 gi|291175666|gb|EFE31470.1| hypothetical protein ARB_01618 [Arthroderma benhamiae CBS 112371]
          Length = 1444

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 301/980 (30%), Positives = 475/980 (48%), Gaps = 175/980 (17%)

Query: 282  FFLGVVLVPPIKFRLPSKGGD-SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
            F    +  PP+  R PS G + +  E   T  L  ++Q+N+ L  A +++    + I+  
Sbjct: 267  FLWQFIPAPPVPIR-PSVGQEGASTEDDLTAKLGDIVQSNLNLKMA-LDKGAPVQTIIEC 324

Query: 341  W--MNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            W  M LQ +V +  D  G      +    G+CQ L+ K+G FR  L GKRV+++ R+VIS
Sbjct: 325  WDYMQLQIAVYINSDIPGLQNTDSKKTIRGLCQRLKGKQGRFRGNLSGKRVDFSGRTVIS 384

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PDP L ++E+ +P   A+ +TYPERVT +N  KLR  I NG +  PGA + + + ++ RL
Sbjct: 385  PDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCIRNGTKTWPGANYLIKEGNSFRL 444

Query: 457  PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
                     I  +L                  EG +V RHL+DGD+VL NRQP+LHK SI
Sbjct: 445  FLKYGNLNMIANQLR-----------------EGDIVERHLEDGDIVLFNRQPSLHKLSI 487

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            ++H V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA  ++   +    P
Sbjct: 488  LSHFVKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKSNLATP 546

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
             NG+P+ + IQD I +A LL+ KD F +R  F Q+  S                  +L S
Sbjct: 547  KNGEPIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLS------------------MLDS 588

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
             +  E+ P  PA  KP+ LWTGKQV + ++      RP                   N D
Sbjct: 589  STRFELPP--PATIKPQMLWTGKQVFSVLM------RP-------------------NKD 621

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEK--LLI 754
                             K++ D + ++ ++V+G+P             ++L E    L I
Sbjct: 622  CPV--------------KVNLDAACRQLKLVKGQP-------------RDLCENDGWLCI 654

Query: 755  YKNDLVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
              ++++ GV DK+         +   +Q  +G   A   ++ LS+L   +L   GF+ G+
Sbjct: 655  RNSEMLCGVADKSTIGAGKKDNIFFVIQRDFGYAAAAEAMNRLSKLSARWLTNKGFSIGI 714

Query: 812  DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAA 871
             D+   +   + +   ++ + +                + D +   +  EK   G  D+ 
Sbjct: 715  TDVYPGESLVKLKDTLINTAFQ----------------QCDDLITAASKEKPQMGKSDSR 758

Query: 872  VAYFDMKMTSQLNK---HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQIS 928
                + ++T  LNK         I+EL        +  N   +M T G+KGS +N  Q+ 
Sbjct: 759  QTA-ENEITGILNKVRQQAGEYCISEL--------SKHNAPLIMATCGSKGSNINVSQMV 809

Query: 929  SHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGRE 988
            + +GQQ +E  RV +    +TLP F        A GF+ + F +GL P E+ FH M+GRE
Sbjct: 810  AVVGQQSIENARVSKGFQDRTLPHFARHSQHALAKGFVRNSFFSGLTPTEFLFHAMSGRE 869

Query: 989  GLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE---DGVDVHQTS 1045
            GL+DTAVKT+ +GY+ R L+K+LE L   YD +VRD+   I+QF YG+   D V++  ++
Sbjct: 870  GLIDTAVKTAETGYMSRRLMKSLEDLSTRYDNTVRDSSSFIIQFQYGDDQLDPVNMEASA 929

Query: 1046 FISKFDALAARERGRGRGRNKFCDKG-SHTFVMGRNQEMI------------------YK 1086
                FD            ++   +KG S   ++   +E+I                  YK
Sbjct: 930  KPVHFDRTFTHAESTTYDKD---EKGLSADEILALCEELIAPERKKLVRYDLLGNTLSYK 986

Query: 1087 K----CSGQLDASNAYIMEL------------PDALKDNAEKFADKFLSNEMAK--QDFL 1128
                  + Q +++  ++  +            P   ++  E+ A    S   A+  + F+
Sbjct: 987  AENDFATDQWESNRDFLSSIEEYVAAKAAQLRPSDNEEGKEQMAFTHTSKISARTLKAFI 1046

Query: 1129 KLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILT 1188
                 K++ +  +PG  +G + +QS+GEP TQMTL TFH AG   M++T G+PR++EI+ 
Sbjct: 1047 TSCLDKYMRAHVEPGHSIGAIGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN 1106

Query: 1189 IASKDIKTPVITCPLLVGKT 1208
             ASK+I TP+ITC  LV KT
Sbjct: 1107 -ASKEISTPIITCE-LVNKT 1124


>gi|388857575|emb|CCF48724.1| probable RPO31-DNA-directed RNA polymerase III, 160 KD subunit
            [Ustilago hordei]
          Length = 1400

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 299/972 (30%), Positives = 467/972 (48%), Gaps = 161/972 (16%)

Query: 287  VLVPPIKFRLPSKGGD-SVMEHPQTVLLSKVLQANIYLANAYVN--QPDNAKVIVARWMN 343
            + VPP+  R PS   D +  E   T+ L++++  N  L    V   +      +V +W  
Sbjct: 253  ICVPPVCIR-PSVAQDGATNEDDVTIKLTEIIFTNSLLKLGLVKGGKGTTTSQLVQQWEF 311

Query: 344  LQQSVNVLFDGK-----NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
            LQ +V +  + +        GQ+  + G CQ L+ K+G FR  L GKRV+++ R+VI PD
Sbjct: 312  LQLTVALYINSELPGVPTQPGQKP-SRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVIGPD 370

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLD-KLSTMRLP 457
            P L ++E+ +P   A  LTYPERV   N+ +LR ++ NG ++HPGA + +D K    R  
Sbjct: 371  PNLKIDEVAVPQRVAKILTYPERVFEHNIEQLRQAVRNGTDVHPGANYLMDGKTGFKRFL 430

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIM 517
                MR  + +KL                   G +V RH++DGD+VL NRQP+LHK SIM
Sbjct: 431  KFPGMREELAQKLRV-----------------GDIVERHIRDGDIVLFNRQPSLHKLSIM 473

Query: 518  AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
            +H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +R EA  ++   +  V P 
Sbjct: 474  SHRAKI-RPWRTFRLNECACNPYNADFDGDEMNMHVPQTEEARTEATILMGVKHNLVTPR 532

Query: 578  NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISR 637
            NG+P+ + IQD I ++ L++K+D F +R +F Q+   S  + + L               
Sbjct: 533  NGEPIIAAIQDFITASYLISKRDRFFDRAQFAQV--CSYFADADL--------------- 575

Query: 638  SEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADK 697
             + ++ P  PAI KP  LWTGKQV++ ++    R  P  +                N + 
Sbjct: 576  -QIDIPP--PAIMKPVRLWTGKQVMSCLIRP-NRKSPHLI----------------NLEA 615

Query: 698  QSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN 757
            Q    +  KG                     G P           K+   ++  L+I  +
Sbjct: 616  QCRTFEKPKG---------------------GHP-----------KDMSPNDGWLVIVNS 643

Query: 758  DLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
            +++ GV DK+   D     +   +   YG + A T ++ L++    +L   GF+ G++D+
Sbjct: 644  EVMCGVFDKSTVGDGKKNSVFGVMLRDYGPDAAITAMNRLAKTCARWLANQGFSLGINDV 703

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
            +   +  + +   +  +       + E L+L              IEKA  G  +     
Sbjct: 704  IPGPNLRKNKDAKVEAA-------YAECLDL--------------IEKAKHGKLENLPGC 742

Query: 875  FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
               +    +     S V +++    + + +  N   +M  SG+KGSK+N  Q+ + +GQQ
Sbjct: 743  DQEQTLENMISGVLSGVRSDVGEICMTELSRHNAPLVMAVSGSKGSKINVAQMVACVGQQ 802

Query: 935  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
             + G RVP     ++LP F      P + GF+ + F +GL P E+ FH ++GREGLVDTA
Sbjct: 803  IIAGSRVPNGFQDRSLPHFPKKSKDPPSKGFVRNSFFSGLTPTEFLFHAISGREGLVDTA 862

Query: 995  VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF----ISKF 1050
            VKT+ +GY+QR L+K LE L   YD SVR++ G +VQF YG+DG+D  +       I  F
Sbjct: 863  VKTAETGYMQRRLMKALEDLSTHYDLSVRNSVGGVVQFIYGDDGLDPAELEGNAMPIEPF 922

Query: 1051 ----DALAARERGRGRGRNKF------------------CDKGSHTFVMGRNQEMIYKKC 1088
                  +A      GRG   +                  C +     V     E +YK+ 
Sbjct: 923  RLWRHCMAITHHIPGRGMYPYEIMEIVERELKSPRFVNTCTQKYRDSVYEFLSENVYKRA 982

Query: 1089 SGQLDASNAYIMELPDALKDN-------AEKFADKFLSN-----EMAKQDFLKLVKHKFV 1136
                 A   Y  E      D        A++ A   ++N     E+A  +FL     K++
Sbjct: 983  VEVRQAFGMYGAEERAEYWDEHTDLSFGADRDAWAIVNNKTKIKEVAILEFLNQCYIKYM 1042

Query: 1137 LSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKT 1196
             +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR++EI+  A+K I T
Sbjct: 1043 KAKIEPGSAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-AAKSINT 1101

Query: 1197 PVITCPLLVGKT 1208
            P+I   L+  K+
Sbjct: 1102 PIIEAKLVSEKS 1113



 Score = 42.4 bits (98), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C+TC  +   C GH+G+I LV+PV++   F     +L+ IC  C      +  RR+  K 
Sbjct: 68  CETCHLKMADCVGHYGYIKLVLPVFHVGFFKHTIAILQSICKNCATVLLEEPDRRKFLKR 127

Query: 58  VRKLEL 63
            RK  L
Sbjct: 128 FRKPNL 133


>gi|255728121|ref|XP_002548986.1| hypothetical protein CTRG_03283 [Candida tropicalis MYA-3404]
 gi|240133302|gb|EER32858.1| hypothetical protein CTRG_03283 [Candida tropicalis MYA-3404]
          Length = 831

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 260/727 (35%), Positives = 369/727 (50%), Gaps = 132/727 (18%)

Query: 124 EAKLALLQFLK--IETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGET 181
           E K  + +F K  +   KC NC   +P   K  F  I  N +    I  N ++G      
Sbjct: 211 ERKAVIHEFYKALLSRPKCHNCGMYSPGFRKDGFTKIFENSLTEKQITNNRVKGLQRPSM 270

Query: 182 FSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGP 241
                 +      SD+            P        +H+ GS  V              
Sbjct: 271 IKKSNNKSSSSEVSDL------------PNI------KHKGGSKYV-------------- 298

Query: 242 LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            L +++++I+  L+  E  +   +   +       +G  IFF   VLVPP +FRLPSK G
Sbjct: 299 -LSTEIRNILRSLFNKEQHVLQKVFHSRPYQHDHVSG-DIFFKQSVLVPPTRFRLPSKLG 356

Query: 302 DSVMEHPQTVLLSKVLQANIY-------LANAYVNQ--PDNAKVIVARWMN----LQQSV 348
           D + E+ Q  LLS +++ ++        ++N Y ++   ++ K++  R MN    LQ  V
Sbjct: 357 DEIHENAQNELLSNIIKTSVLIRTLNDQISNMYKDKLGGEDKKILFNRLMNAFVTLQNDV 416

Query: 349 NVLFD---GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNE 405
           N   D    +NA   +    GI Q LEKKEGLFR+ +MGKRVNYA RSVISPDP L  NE
Sbjct: 417 NAFIDSTKNQNAPAGKVPNPGIKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNLETNE 476

Query: 406 IGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRIS 465
           IG+PP FA +LTYPE VT +N  +LR ++ING +  PGA    ++        +  +   
Sbjct: 477 IGVPPVFATKLTYPEPVTSYNAAELRQAVINGPDTWPGAIQIQNE--------DGSLVSL 528

Query: 466 IGRKLDTSRGAIVQPGKDSD-NEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVL 524
           +G  L+  +    Q    S+ N   GK VYRH+++ DVV++NRQPTLHK S+M H VRVL
Sbjct: 529 VGMTLEQRKALANQLLTPSNGNSVVGKKVYRHIKNNDVVIMNRQPTLHKASMMGHKVRVL 588

Query: 525 KGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRS 584
            GEKTLR+HYAN   YNADFDGDEMN+HFPQ+E +RAEA N+ N ++QY+ P++G PLR 
Sbjct: 589 PGEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALNLANTDSQYLTPTSGSPLRG 648

Query: 585 LIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLP 644
           LIQDHI +   LT KDTF  R+ + QL+Y         G    + G       +   ++ 
Sbjct: 649 LIQDHISAGVWLTSKDTFFTRETYQQLIY---------GCIRPEDGH-----TTRNRIIT 694

Query: 645 LLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKN 704
           + PA++KPE LWTGKQVIT +L +I     P V                           
Sbjct: 695 VPPAVYKPEMLWTGKQVITTILLNIKPENVPGV--------------------------- 727

Query: 705 DKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGV 763
               L   NK+  D  G                        E S E  +I+KN +L+ G+
Sbjct: 728 ---NLISKNKIKSDYWG------------------------EGSTENDVIFKNGELLCGI 760

Query: 764 IDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKE 821
           +DK+Q+  + +G++H++ E+YG   AG  LS L RLFT ++ M  FTCG+DDL +  +  
Sbjct: 761 LDKSQYGASQFGIIHSLHEVYGPTVAGKALSILGRLFTNYIMMTAFTCGMDDLRLTDEGN 820

Query: 822 RERKNHL 828
           + RK +L
Sbjct: 821 KWRKGYL 827


>gi|328710964|ref|XP_001945328.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
            [Acyrthosiphon pisum]
          Length = 1366

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 318/954 (33%), Positives = 466/954 (48%), Gaps = 165/954 (17%)

Query: 287  VLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMN 343
            +LVPP   R PS   D      E   T+ LS+VL  N  +   +       +++   W  
Sbjct: 259  MLVPPNCIR-PSAVSDIRSGTNEDDLTLKLSEVLFINDVIVK-HKQSGAKPQLLHEDWEY 316

Query: 344  LQQSVNVLFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
            LQ    +  +   +   R M     A G  Q L+ K G FR  L GKRV++  RSVISPD
Sbjct: 317  LQLHCALYINSDLSGVSRTMMPKKIARGCVQRLKGKHGRFRGNLSGKRVDFTARSVISPD 376

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP 458
            P L + E+G+P   A  LTYP++V P N+  +R  ++NG EIHPGA     + S ++   
Sbjct: 377  PNLRIEEVGVPVRMAKILTYPQKVCPANIELMRKLVMNGPEIHPGANFVELQGSKLK--- 433

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
             K +R         +R AI +  K  D      +V RHL DGD+VL NRQP+LH+ SIM 
Sbjct: 434  -KYLRFG-------NRPAIAKDLKIGD------IVERHLSDGDIVLFNRQPSLHRLSIMC 479

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H  +VL+   TLR +   C+ YNADFDGDEMN+H PQ E +RAEA  ++   +  V P N
Sbjct: 480  HRAKVLE-HNTLRFNECVCTPYNADFDGDEMNLHLPQTEEARAEAALLMINKSNLVTPRN 538

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            GD L +  QD I  A LLT K+TFLN+ +          SS  +G      G  + I  +
Sbjct: 539  GDILIAATQDFITGAYLLTHKNTFLNQRD----------SSRLIGWLMS--GDDINIDLT 586

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
                LP  PAI KP  LWTGKQ+++ ++      RP                        
Sbjct: 587  ----LP-RPAILKPHKLWTGKQILSIIM------RP------------------------ 611

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND 758
                   K  L K N   K KS  + E                  E    +  + I  ++
Sbjct: 612  ------SKKCLVKANLRCKGKSYTRDE------------------EFCFKDSYVYIKNSE 647

Query: 759  LVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV---- 811
            L+ G +DKA     +   + + +   +GS+    ++  L+RL + FL + GF+ G+    
Sbjct: 648  LLAGTMDKATLGSGSKSNIFYVLLADWGSDVCCKVMWRLTRLTSYFLMLRGFSIGIGDVT 707

Query: 812  --DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGD 869
              DDLL  K++     N L   EE  +  + + L+ + G  +D   L++ I K + G  D
Sbjct: 708  PSDDLLQSKNELVINGNAL--CEENIRLRNSKELKCQPGCNMDE-TLEANILKQLSGIRD 764

Query: 870  AAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISS 929
            +                        +    LL+    N   +M  SG+KGS +N  Q+ +
Sbjct: 765  S------------------------VGKACLLELHFTNGPLVMALSGSKGSNINISQMIA 800

Query: 930  HLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREG 989
             +GQQ L G RVP     ++LP F  +   P A GF+ + F +GL P E++FH M GREG
Sbjct: 801  CVGQQALSGHRVPDGFESRSLPHFKRFSKTPEAKGFVENSFYSGLTPTEFFFHTMGGREG 860

Query: 990  LVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISK 1049
            LVDTAVKT+ +GY+QR L+K+LE L + YD +VR+A G ++QF +G D +D   T    +
Sbjct: 861  LVDTAVKTAETGYMQRRLVKSLEDLCVHYDNTVRNAFGDVIQFEFGGDSLDPTYT----E 916

Query: 1050 FDALAARERGRGRGRNKFCDKGSH--TFVMGRNQEMIYKKCSGQLDASN------AYIME 1101
             D +    +     R  F    ++  T     + E I K     L + N       +  E
Sbjct: 917  GDGVPVDFK-----RVYFNVTANYPCTDECTLDSEEILKITEDVLLSENFQNVNTIFTEE 971

Query: 1102 LPD---ALKDNAEKFADKFLSNEMAKQDFL---KLVKH------KFVLSLAQPGEPVGLL 1149
            L +    L +N  +   K+L+ E++K   +   +L+K       K++ ++ +PG PVG +
Sbjct: 972  LRNFGKNLANNMAELRKKWLNLEVSKIQRITSTQLIKFYVTCLTKYMAAVIEPGTPVGAI 1031

Query: 1150 ASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            A+QS+GEP TQMTL TFH AG   MN+T G+PR++EI+  +SK+I TP+IT  L
Sbjct: 1032 AAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN-SSKNISTPIITAYL 1084



 Score = 43.5 bits (101), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRIC 41
           C TC +    CPGH G IDL +PV++   F+ + T+L+ IC
Sbjct: 72  CMTCNKGLNDCPGHLGFIDLQLPVFHVGFFSSVITILQTIC 112


>gi|225435153|ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 313/969 (32%), Positives = 452/969 (46%), Gaps = 184/969 (18%)

Query: 289  VPPIKFRLPS---KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
            VPPI  R PS    GG    E+  T  L +++QAN  L     +    +K + A W  LQ
Sbjct: 256  VPPIAIR-PSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTGSTSKCL-AGWDYLQ 313

Query: 346  ----QSVNVLFDGKNAAGQRDMA-SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
                Q +N    G   A Q     SG  Q L+ K+G FR  L GKRV Y  R+VISPDP 
Sbjct: 314  IEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPN 373

Query: 401  LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK 460
            L + E+ IP   A  L+YPERV+  N+ KLR  I+NG   +PGA         +R P   
Sbjct: 374  LKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGA-------KLIRYP--- 423

Query: 461  KMRISIGRKLDTSRGAIVQPGKD--SDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
                      D S  +++  G+   +D    G +V RHL+DGDVVL NRQP+LH+ SIM 
Sbjct: 424  ----------DGSMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMC 473

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H  R++   +TLR + + C+ YNADFDGDEMN+H PQ E +R EA  ++   N    P N
Sbjct: 474  HRARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKN 532

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            G+ L +  QD + S+ L+T+KDTF +R  F           S + S+ G     V     
Sbjct: 533  GEILVASTQDFLTSSFLITRKDTFYDRAAF-----------SLMCSYMGDGMDLV----- 576

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
                LP  PAI KP  LWTGKQ+   +L                  P    +   N    
Sbjct: 577  ---DLP-TPAIIKPVELWTGKQLFNVLLR-----------------PHANVRVYLN---- 611

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN- 757
                      L+   K +  + G                     KE     +  + ++N 
Sbjct: 612  ----------LTVMEKTYNKRRG---------------------KETMCPSDGFVYFRNS 640

Query: 758  DLVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
            +L+ G + KA   +    GL   +   Y ++ A   ++ L++L   ++  HGF+ G+DD+
Sbjct: 641  ELISGQLGKATLGNGNKDGLFSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDV 700

Query: 815  L---ILKDKERER-KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
                +L D++ +R +       E+ ++ +   L+L+ G                      
Sbjct: 701  QPGGLLNDQKSKRIEEGYENCHELIQQYNKGKLKLQPGCN-------------------- 740

Query: 871  AVAYFDMKMTSQLNK--HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQIS 928
            A    + ++T  LNK   T+++V  E L         +N   +M+  G+KGS +N  Q+ 
Sbjct: 741  AAQTLEAEITGVLNKIRETTANVCMEELH-------WRNSPLIMSQCGSKGSPINISQMI 793

Query: 929  SHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGRE 988
            + +GQQ + G+R P     +TLP F      P A GF+   F TGL   E++FH M GRE
Sbjct: 794  ACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYTGLTATEFFFHTMGGRE 853

Query: 989  GLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTS--- 1045
            GLVDTAVKT+ +GY+ R L+K LE L I YD +VR+A+GSIVQF YG+DG+D  +     
Sbjct: 854  GLVDTAVKTADTGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGDDGMDPARMEGKD 913

Query: 1046 -FISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKC----SGQLDASNAYIM 1100
             F   F+ L  + +         C  G +  +     E   K+     +     S+A+  
Sbjct: 914  GFPLNFNRLFLKVKAT-------CPAGENASLSALQIEETVKRLKEHNTSAEGCSDAFKT 966

Query: 1101 ELPDALKDNAEKF---------------------ADKFLSN-----EMAKQDFLKLVKHK 1134
             L   L++  EKF                      +KF  N         Q FL     +
Sbjct: 967  NLSGFLEECKEKFKNTREALGLHGEHVGEENLDIQEKFAKNISGITSKQLQVFLDTCISR 1026

Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
            + L   + G  +G + + S+GEP TQMTL TFH AG   MNVTLG+PR++EI+   +K I
Sbjct: 1027 YQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-GAKRI 1085

Query: 1195 KTPVITCPL 1203
             TP+IT  L
Sbjct: 1086 STPIITAAL 1094



 Score = 42.4 bits (98), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF----KASRREVEK 56
           C TC      CPGH G++ L +PVYN    + +  +LK IC  C       KAS+  ++K
Sbjct: 73  CATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLLDEKASKDYLKK 132

Query: 57  C-VRKLELIIKGDII 70
              +K+E + K +++
Sbjct: 133 MRSQKMEALKKAELM 147


>gi|443899688|dbj|GAC77017.1| RNA polymerase III, large subunit [Pseudozyma antarctica T-34]
          Length = 1400

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 316/1061 (29%), Positives = 500/1061 (47%), Gaps = 182/1061 (17%)

Query: 199  APETHSFNGTFPGTQDTAARRHQKGSGAV-PSGFKKQKDLFSGPLLPSDVKDIIEKLWEN 257
            A E   F  +F       A   + G+G + P   K Q+DL      P    D+ +++ + 
Sbjct: 184  AAEHEEFRASF-------ATNIKMGNGDITPHLNKAQEDLN-----PLKALDLFKRISDE 231

Query: 258  EFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVM-EHPQTVLLSKV 316
            + EL     +     FG+      +    + VPP+  R PS   D    E   T+ L+++
Sbjct: 232  DCELLGLRPE-----FGRPEE---YIWQYICVPPVCIR-PSVAQDGATNEDDVTIKLTEI 282

Query: 317  LQANIYLANAYVN--QPDNAKVIVARWMNLQQSVNVLFDGK-----NAAGQRDMASGICQ 369
            +  N  L    V   +      +V +W  LQ +V +  + +        GQ+  + G CQ
Sbjct: 283  IFTNSLLKLGLVKGGKGTTTSQLVQQWEFLQLTVALYINSELPGVPTQPGQKP-SRGFCQ 341

Query: 370  LLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVK 429
             L+ K+G FR  L GKRV+++ R+VI PDP L ++E+ +P   A  LTYPERV   N+ +
Sbjct: 342  RLKGKQGRFRGNLSGKRVDFSGRTVIGPDPNLKIDEVAVPQRVAKILTYPERVFEHNIEQ 401

Query: 430  LRDSIINGAEIHPGATHYLD-KLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEF 488
            LR ++ NG ++HPGA + +D K    R      MR  + +KL                  
Sbjct: 402  LRQAVRNGTDVHPGANYLMDGKTGFKRFLKFPGMREELAQKLRV---------------- 445

Query: 489  EGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 548
             G +V RH++DGD+VL NRQP+LHK SIM+H V+V +  +T R++   C+ YNADFDGDE
Sbjct: 446  -GDVVERHIRDGDIVLFNRQPSLHKLSIMSHRVKV-RPWRTFRLNECACNPYNADFDGDE 503

Query: 549  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
            MN+H PQ E +R EA  ++   +  V P NG+P+ + IQD I ++ L++K+D F +R +F
Sbjct: 504  MNMHVPQTEEARTEATILMGVKHNLVTPRNGEPIVAAIQDFITASYLISKRDRFFDRAQF 563

Query: 609  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
             Q+   S  + + L                  ++ P  PAI KP  LWTGKQV++ ++  
Sbjct: 564  SQI--CSYFADANL----------------HIDIPP--PAIMKPVRLWTGKQVMSCLIR- 602

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
                + P +V               N + Q    +   G                     
Sbjct: 603  -PNSKSPHIV---------------NLEAQCRTFEKPTG--------------------- 625

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSN 785
            G P           K+   ++  L+I  ++++ GV DK+   D     +   +   YG +
Sbjct: 626  GHP-----------KDMSPNDGWLVIVNSEVMCGVFDKSTVGDGKKNSVFGVMLRDYGPD 674

Query: 786  TAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALEL 845
             A T ++ L++    +L   GF+ G++D++   +  + +   +  +       + E L+L
Sbjct: 675  AAITAMNRLAKTCARWLANQGFSLGINDVIPGPNLRKNKDAKVEAA-------YAECLDL 727

Query: 846  EDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTG 905
                          IEKA RG  +        +    +     S V +++    + + + 
Sbjct: 728  --------------IEKAKRGKLENLPGCDQEQTLENMISGVLSGVRSDVGEICMTELSR 773

Query: 906  KNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGF 965
             N   +M   G+KGSK+N  Q+ + +GQQ + G RVP     ++LP F      P + GF
Sbjct: 774  HNAPLVMAFCGSKGSKINVAQMVACVGQQIIAGSRVPNGFQDRSLPHFPKKSKDPLSKGF 833

Query: 966  IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDA 1025
            + + F +GL P E+ FH ++GREGLVDTAVKT+ +GY+QR L+K LE L   YD SVR++
Sbjct: 834  VRNSFFSGLTPTEFLFHGISGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDLSVRNS 893

Query: 1026 DGSIVQFCYGEDGVDVHQTSF----ISKF----DALAARERGRGRGRNKF---------- 1067
             G +VQF YG+DG+D  +       I  F      +A      GRG   +          
Sbjct: 894  VGGVVQFIYGDDGLDPAELEGNAMPIEPFRLWRHCIAITRHLPGRGLFPYEIMEIVKREL 953

Query: 1068 --------CDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPD---------ALKDNA 1110
                    C +     V     E ++K+     +A   Y  E  +         ++  N 
Sbjct: 954  TSPKFVNTCTQKYRDSVHEFLHENVFKRAVATREAFGMYGAEEREEHWDEHTDLSIGANR 1013

Query: 1111 EKFA---DKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFH 1167
            +++A   +K    E A   FL+    K++ +  +PG  VG + +QS+GEP TQMTL TFH
Sbjct: 1014 DQWAIVDNKTKVKEAAVLAFLQQCYIKYMRAKIEPGSAVGAVGAQSIGEPGTQMTLKTFH 1073

Query: 1168 LAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKT 1208
             AG   MNVTLG+PR++EI+  A+K I TP+I   L+  K+
Sbjct: 1074 FAGVASMNVTLGVPRIKEIIN-AAKVINTPIIEAKLVSEKS 1113


>gi|25145495|ref|NP_501127.2| Protein RPC-1 [Caenorhabditis elegans]
 gi|351059526|emb|CCD66619.1| Protein RPC-1 [Caenorhabditis elegans]
          Length = 1400

 Score =  398 bits (1022), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 304/970 (31%), Positives = 464/970 (47%), Gaps = 173/970 (17%)

Query: 289  VPPIKFR--LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNA--KVIVARWMNL 344
            VPP+  R  + S+      E   T+ L +++  N  L     ++ D A  K +   W +L
Sbjct: 253  VPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKK---HKRDGAPSKTLFETWEHL 309

Query: 345  QQSVNVLFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDP 399
            Q    +  + + +    DM          Q L+ K+G FR  L GKRV+++ R+VISPDP
Sbjct: 310  QIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDP 369

Query: 400  YLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPN 459
             L ++++G+P + A+ LT+PE V   N+ K+R  +ING+++HPGA + ++K +      N
Sbjct: 370  NLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTG-----N 424

Query: 460  KKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAH 519
            KK+ +  G++ + ++           N   G  + RHL D DVVL NRQP+LHK SIM+H
Sbjct: 425  KKL-LKYGKRDELAK-----------NLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSH 472

Query: 520  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNG 579
              +V+ G +T R +   C+ YNADFDGDEMN+H PQ   ++AEA  ++N  N  + P +G
Sbjct: 473  RAKVMPG-RTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSG 531

Query: 580  DPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSE 639
            +PL + IQD I    LLT KDTFL R E  +        ++ L   + K   ++ I    
Sbjct: 532  EPLVAAIQDFITGGYLLTHKDTFLPRAEVYRF-------AAALIDASAKKQTKIRIPP-- 582

Query: 640  QEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQS 699
                   PAI +P  LWTGKQ+I  ++      RP                     DK S
Sbjct: 583  -------PAIRRPVELWTGKQLIELII------RP---------------------DKGS 608

Query: 700  DRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKEL---SEEKLLIYK 756
            D   N                                  KNKS    L   S++  +I +
Sbjct: 609  DVSLN-------------------------------LTAKNKSYTGNLELCSKDSYVIIR 637

Query: 757  ND-LVRGVIDKAQFADYGLVHTVQEL---YGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
            N  L+ G +DK+       V+    L   YG + A   +  L+R+  VFL   GF+ G+ 
Sbjct: 638  NSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIG 697

Query: 813  DLLILKDKERERKNHL-HGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAA 871
            D+   +   RE+   + +G  +  + +     ELE+G      KLK++         ++ 
Sbjct: 698  DVRPSEQLLREKGQLVDNGYSKCSQYIK----ELEEG------KLKAQPGCTEEETLESI 747

Query: 872  VAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHL 931
            +    ++  S +  H     +  L        +  N    M   G+KGS +N  Q+ + +
Sbjct: 748  I----LRELSTIRDHAGQVCLRNL--------SKYNAPLTMAVCGSKGSFINISQMIACV 795

Query: 932  GQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLV 991
            GQQ + G R P     ++LP F      P A GF+ + F +GL P E++FH M GREGLV
Sbjct: 796  GQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLV 855

Query: 992  DTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD----------- 1040
            DTAVKT+ +GY+QR L+K LE L  SYD +VR + G +++F +GEDG+D           
Sbjct: 856  DTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSV 915

Query: 1041 ---VH-------------QTSFISKFD-ALAARERGRGRGRN-KFCDKGSHTFVMGRNQE 1082
                H             Q   + K D  L A  + + +G+   F DK S  ++     +
Sbjct: 916  VDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEIQKKFKGKYVHFADKLSE-YITQTEIK 974

Query: 1083 MIYKKCSGQLDASNAYIMELPD----ALKDNAEKFADKFLSNEMAKQ----DFLKLVKHK 1134
               K  +G+    N    +L       +  N E +    L+N    +     F++L  +K
Sbjct: 975  KSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYKTSLLANSCLTKTQLCSFIELCYYK 1034

Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
               ++ +PG  VG +A+ S+GEPSTQMTL TFH AG   MN+T G+PR++EI+  A K I
Sbjct: 1035 VARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIIN-AVKTI 1093

Query: 1195 KTPVITCPLL 1204
             TP+IT  LL
Sbjct: 1094 STPIITAALL 1103



 Score = 44.7 bits (104), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TCG     C GHFG+ DL VPV++   F L   LL+ IC  C
Sbjct: 70  CSTCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNC 113


>gi|320592285|gb|EFX04724.1| DNA-directed RNA polymerase 3 largest [Grosmannia clavigera kw1407]
          Length = 1390

 Score =  398 bits (1022), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 312/995 (31%), Positives = 458/995 (46%), Gaps = 170/995 (17%)

Query: 266  SDMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA 324
            SD +  G     G    F+   L  PP+  R   +   S  E   T  L++++Q    + 
Sbjct: 194  SDCELLGLDPLDGRPEMFIWQYLPAPPVCIRPSVQQQSSSTEDDLTTKLAEIVQVCGLIR 253

Query: 325  NAYVNQPDNAKVIVARWMNLQ----QSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQ 380
             A V        ++ +W  LQ      +N    G  AA       G  Q L+ K+G FR 
Sbjct: 254  TALVKGAP-ITTLMEQWEFLQFQLAMYINSELPGLTAARHGKPIRGFSQRLKGKQGRFRG 312

Query: 381  KLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEI 440
             L GKRV+++ R+VISPDP LA+NE+ +P   A  L+YPERV   N+ KLR+ ++NG   
Sbjct: 313  NLSGKRVDFSGRTVISPDPNLAINEVAVPVLVAKNLSYPERVNHINIRKLRNLVLNGPTQ 372

Query: 441  HPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDG 500
             PGA   L K                G KLD + G   Q  KD      G  V RHL+DG
Sbjct: 373  WPGAKSILKKDDG-------------GYKLDLNFGNKEQFAKDLR---VGDTVERHLEDG 416

Query: 501  DVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSR 560
            D+VL NRQP+LHK SIM+H+V+V +  +T R++   C  YNADFDGDEMN+H PQ E +R
Sbjct: 417  DIVLFNRQPSLHKLSIMSHLVKV-RPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEAR 475

Query: 561  AEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSS 620
            AEA  ++   +    P NG+P+ +  QD I +A L++ KD F  R  F  +         
Sbjct: 476  AEALTLMGVKHNLATPKNGEPIIAATQDFITAAYLISSKDRFFTRHTFAYM--------- 526

Query: 621  GLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVER 680
                 TG          SEQ  +P  PAI KP+ LWTGKQV   ++              
Sbjct: 527  -CAHMTGS---------SEQLDIP-PPAILKPQALWTGKQVFNIMMR------------- 562

Query: 681  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
                P    K   N D +    K                          +PGE  + +  
Sbjct: 563  ----PNKSSKVLVNLDAKCKAYKR-------------------------RPGEAPDMD-- 591

Query: 741  KSKEKELSEEKLLIYKN-DLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSR 796
                    E+  L+ +N +++ G +DK+         + + +   YG + A T ++ L+R
Sbjct: 592  -------PEDNFLVVRNSEVMCGRMDKSTVGSGKKDSVFYVILRDYGPDEAVTAMNRLAR 644

Query: 797  LFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKL 856
            L   F+   G + GV D+  L                   R  ++ L  E   + D +  
Sbjct: 645  LCARFMGNFGLSIGVFDVFPLTT----------------LREKIKILVREANLKCDELIH 688

Query: 857  KSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSG 916
            K    K  +  G       +  ++  L+K  S++   +L  E L K    N    M TSG
Sbjct: 689  KFNTGKLEKSAGCNLDQTLENSISGVLSKVRSAA--GDLCLETLSK---HNAPLTMATSG 743

Query: 917  AKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRP 976
            +KG  +N  Q+ + +GQQ + G+RVP     ++LP F      P + GF+ + F +GL P
Sbjct: 744  SKGLAINVAQMVAVVGQQIIGGQRVPNGFQDRSLPHFPKNVRNPASKGFVQNSFYSGLLP 803

Query: 977  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE 1036
             E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR + G +VQF +G 
Sbjct: 804  TEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDNTVRTSSGDVVQFQFGS 863

Query: 1037 DGVD-----------------VHQTS--------------FISKFDALAARERGRGRGRN 1065
            DG+D                  H  S               ++  D+L A ER +   R+
Sbjct: 864  DGLDPVDMEGSAVPVNFERSWTHAESITWSNAEPSLDPDTIMAVCDSLLADERAKYIRRH 923

Query: 1066 KFCD----------------KGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDN 1109
               D                +G+  F+    Q    +K + +L  +   ++E  DA   +
Sbjct: 924  LVTDALLDYNDQSDASLDLQEGARKFLDDVRQ--FVQKRADRLTNAKERLVETFDASLAS 981

Query: 1110 AEKFADKFLS-NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHL 1168
               + DK    +E   + F+ +   KF  +  +PG  VG + +QS+GEP TQMTL TFH 
Sbjct: 982  HRSYIDKTAKVSEKTLRAFVVMCLDKFRKAHVEPGHAVGAVGAQSIGEPGTQMTLKTFHF 1041

Query: 1169 AGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            AG   M++T G+PR++EI+  ASK I TP+ITCPL
Sbjct: 1042 AGVAGMSITEGVPRIKEIIN-ASKKINTPIITCPL 1075


>gi|403159566|ref|XP_003320172.2| DNA-directed RNA polymerase III subunit C1 [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
 gi|375168152|gb|EFP75753.2| DNA-directed RNA polymerase III subunit C1 [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
          Length = 1419

 Score =  398 bits (1022), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 309/991 (31%), Positives = 462/991 (46%), Gaps = 160/991 (16%)

Query: 266  SDMQQQGFGKKAGH-SIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA 324
            SD +  G   + G    +    + VPP+  R       +  E   TV L++++  N  + 
Sbjct: 244  SDCELLGLDPEVGRPEEYIWQYIHVPPVCIRPSVAQEAATNEDDLTVKLTEIIFTNTLIK 303

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMA----SGICQLLEKKEGLFRQ 380
               V        I+ +W  +Q SV +  + +       M      G CQ L+ K G FR 
Sbjct: 304  TGLVKGVPTQN-IMEQWEFMQLSVAMYINAELPGVPSQMGVKPIKGFCQRLKGKTGRFRG 362

Query: 381  KLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEI 440
             L GKRV+++ R+VISPDP L++ E+ +P   A  LTYPERVT  N+ +LR  I NG +I
Sbjct: 363  NLSGKRVDFSGRTVISPDPNLSITEVAVPDRVAKILTYPERVTAHNIDRLRQCIRNGPDI 422

Query: 441  HPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQD 499
            HPGA +YL   ST           + G  L   R           N    G  V RHL D
Sbjct: 423  HPGA-NYLVAGSTTN---------ASGSALPFKRSLKFGNRNHVANTLRLGDTVERHLHD 472

Query: 500  GDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVS 559
            GDVVL NRQP+LHK SIM+H  ++ +  +T R +   C+ YNADFDGDEMN+H PQ E +
Sbjct: 473  GDVVLFNRQPSLHKLSIMSHRAKI-RPWRTFRFNECVCTPYNADFDGDEMNLHVPQTEEA 531

Query: 560  RAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSS 619
            R EA  ++N     V P NG+P+ +  QD I ++ LL++KD F +R +F Q+L       
Sbjct: 532  RTEATELMNIKYNLVTPRNGEPIIAATQDFITASFLLSRKDNFYDRQQFSQIL------- 584

Query: 620  SGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVE 679
                        + L   +    LP  P IWKP  LWTGKQV   ++      RP     
Sbjct: 585  ------------QYLSDATLHIDLP-PPVIWKPVRLWTGKQVFNVLM------RP----- 620

Query: 680  RGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEK 739
                            +K S  K N                      VE K    ++A  
Sbjct: 621  ----------------NKDSPVKVN----------------------VEAKCATHQKAAP 642

Query: 740  NKSKEKELSEEKLLIYKNDLVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSR 796
                +   ++  L+I  ++++ GV+DKA         +   +   +G + A   ++ L++
Sbjct: 643  EYLPDMSPNDGWLVIQNSEIMCGVVDKAIVGGGKKDSIFAVINCDFGPDEAVKAMNRLAK 702

Query: 797  LFTVFLQMHGFTCGVDDLLILKDKERERKNHLHG-----SEEIGKRVHLEALELEDGAEI 851
            +   +L   GF+ GV D +   ++   +KN L       ++E+ ++     LE   G ++
Sbjct: 703  VSARWLANMGFSIGVGD-VTPGERLSTQKNALVAKAYKETDELIQQSKAGKLETLPGRDL 761

Query: 852  DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
            D      +  +AM  G           + S++        + EL        T  N   +
Sbjct: 762  D------QTLEAMISG-----------VLSKVRDSLGEICMAEL--------TRHNAPLI 796

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            M T G+KGSK+N  Q+ + +GQQ + G R+P     ++LP FH     P A GF+ + F 
Sbjct: 797  MATCGSKGSKINVAQMVACVGQQIISGNRIPDGFQDRSLPHFHKKAKEPPAKGFVRNSFH 856

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            +GLR  E+ FH ++GREGLVDTAVKT+ +GY+QR L+K LE L   YD SVR++ G +VQ
Sbjct: 857  SGLRATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLATRYDDSVRNSVGGVVQ 916

Query: 1032 FCYGEDGVDV-----------------HQTSFISKFD--ALAARERGR----GRGRNKFC 1068
            F YG+DG+D                  H  + +S  D   L   E  +    G  + +F 
Sbjct: 917  FTYGDDGLDPTYLEGDGEPVEFARTWRHTKATVSHLDGRGLHPYEITQLVTDGLAQPRFT 976

Query: 1069 DKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFAD----------KFL 1118
               +  F       M+ +      +   +Y M     L+ + +++ D          K +
Sbjct: 977  TACTQRFRDSVLDFMVERVVKPAANFRQSYGMYPALELEGDWDEYTDLSAGVSEASKKIV 1036

Query: 1119 SNEMAK-----QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGE 1173
             N+        + FL     K+V +  +PG  VG + +QS+GEP TQMTL TFH AG   
Sbjct: 1037 INKTQVTLKQIETFLDHCWKKYVKAKVEPGTAVGAVGAQSIGEPGTQMTLKTFHFAGVAS 1096

Query: 1174 MNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            MN+TLG+PR++EI+  ASK I  P+I  PL+
Sbjct: 1097 MNITLGVPRIKEIIN-ASKLINGPIINAPLV 1126


>gi|383861274|ref|XP_003706111.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
            [Megachile rotundata]
          Length = 2015

 Score =  398 bits (1022), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 315/1004 (31%), Positives = 481/1004 (47%), Gaps = 179/1004 (17%)

Query: 241  PLLPSDVKDIIEKLWENEFEL------CSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKF 294
            PL    V+ I+EK+ E++  L      C+   D+               L  + VPPI  
Sbjct: 851  PLEVKVVQSILEKIPESDIPLLMMNPECALPKDL--------------ILTRIPVPPICI 896

Query: 295  RLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR--WMNLQQSVN 349
            R PS   D      E   T+ LS+++  N  +     ++   AKV +    W  LQ    
Sbjct: 897  R-PSVVSDLKAGTTEDHLTMKLSEIVFINDVIQK---HRQSGAKVQMYNEDWEFLQLHCA 952

Query: 350  VLFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVN 404
            +  + + +    +M       G+ Q L+ K+G FR  L GKRV+++ R+VISPDP L + 
Sbjct: 953  LYINSEMSGIPLNMQPKKSGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLRIE 1012

Query: 405  EIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRI 464
            ++G+P + A  LTYPERV P N+  +R  + NG ++HPGA       +  +    K +R 
Sbjct: 1013 QVGVPIHVAKILTYPERVNPSNIELMRKLVRNGPDVHPGANFIQQGKTQFK----KYLRY 1068

Query: 465  SIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVL 524
                    +R  I Q     D ++ G +V RHL+D DVVL NRQP+LHK SIMAH  +VL
Sbjct: 1069 G-------NRQKIAQ-----DLQY-GDIVERHLRDDDVVLFNRQPSLHKLSIMAHKAKVL 1115

Query: 525  KGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRS 584
            +  +T R +   C+ YNADFDGDEMN+H PQ E +RAEA  ++   +  V P NG+ L +
Sbjct: 1116 E-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALVLMGNKSNLVTPRNGELLIA 1174

Query: 585  LIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLP 644
              QD I    LLT+KD FLN+ +  QL   +G   +GL          + +S    E   
Sbjct: 1175 ATQDFITGGYLLTQKDMFLNKSQASQL---AGCLLAGLD---------IAMSIDLPE--- 1219

Query: 645  LLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKN 704
              PAI KP  LWTGKQ+ + +L                  P      R N          
Sbjct: 1220 --PAILKPTVLWTGKQIFSLILK-----------------PNKMCNIRANL--------K 1252

Query: 705  DKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVI 764
             KG+   TN                             +E  +++  ++I  ++L+ G +
Sbjct: 1253 TKGRAYTTN-----------------------------EELCINDSYVIIRNSELLAGSM 1283

Query: 765  DKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKE 821
            DK+     +   + + +   +G + A T +  L+R+ + FL   GF+ G+ D+   +   
Sbjct: 1284 DKSTLGSGSKQNIFYILLRDWGEDIATTAMWRLARMASFFLMNRGFSIGIGDVTPGQGLL 1343

Query: 822  RERKNHLH-GSEEIGKRVHLEALELEDGAEI-DPIKLKSEIEKAMRGGGDAAVAYFDMKM 879
            + ++  LH G  +  + +H    ++E+G  +  P   + E  +AM            +K 
Sbjct: 1344 KAKQELLHAGYSKCTEYIH----QMEEGRLVCQPGCTEEETLEAMI-----------LKE 1388

Query: 880  TSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGK 939
             S +  H   + + E      L P+    +  M  SG+KGS +N  Q+ + +GQQ + G 
Sbjct: 1389 LSVIRDHAGKACLKE------LHPSNSPLV--MALSGSKGSFINISQMIACVGQQAISGH 1440

Query: 940  RVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSR 999
            RVP     + LP F      P A GF+ + F +GL P E++FH M GREGLVDTAVKT+ 
Sbjct: 1441 RVPNGFEDRALPHFERHSKIPAAKGFVENSFYSGLTPTEFFFHTMGGREGLVDTAVKTAE 1500

Query: 1000 SGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERG 1059
            +GY+QR L+K+LE L + YD +VR++ G IVQ  YG D +D    +++   D     +R 
Sbjct: 1501 TGYMQRRLVKSLEDLCLHYDMTVRNSVGDIVQILYGGDALD---PTYMEGKDCPVDYKRV 1557

Query: 1060 RGRGRNKFCDKGSHTF----VMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFA- 1114
                R K   K   +     V+    E++  +    L  S  +  EL   LK  A K A 
Sbjct: 1558 LDHVRAKSPCKNEQSLDGPSVITATNELLSSEEYECL--SKEFKQELATFLKSIARKIAR 1615

Query: 1115 ---------------DKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPST 1159
                           ++   +++   +F+ + K K++ +  +PG  VG LA+QS+GEP T
Sbjct: 1616 LRHNAPSNIPVILQLERLTVSQLV--EFIHICKEKYMRAKIEPGTAVGALAAQSIGEPGT 1673

Query: 1160 QMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            QMTL TFH AG   MN+T G+PR++EI+  A+  I TP+IT  L
Sbjct: 1674 QMTLKTFHFAGVASMNITQGVPRIKEIIN-ANPKISTPIITAAL 1716



 Score = 46.2 bits (108), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 29/50 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
           C +CG+    C GHFG+IDL +PV++   F  +  +L+ IC  C H   S
Sbjct: 700 CASCGKSLNECIGHFGYIDLELPVFHVGYFRSIIGILQSICKNCAHVMLS 749


>gi|320594279|gb|EFX06682.1| DNA-directed RNA polymerase 1 subunit [Grosmannia clavigera kw1407]
          Length = 2662

 Score =  397 bits (1021), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 266/739 (35%), Positives = 380/739 (51%), Gaps = 112/739 (15%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TC   Q LCPGH GHIDL VPVY+P+  +    LL+  C +CHHF+   +E+ + V K
Sbjct: 983  CTTCNLGQSLCPGHAGHIDLPVPVYHPVFLDQTLRLLRAECMYCHHFRLPHKELNQYVCK 1042

Query: 61   LELIIKGDIIAAKSLDL-----------DLPSESSNPEDSDVSNKSSCSMVTPRGNY--- 106
            L L+  G +  A ++D            D+P      +D  ++   S S    R  Y   
Sbjct: 1043 LRLLQYGLLAEATNIDAIGEDYDSLALPDVPQIEIEADDDSMTLSDSVSRA--RSTYVRQ 1100

Query: 107  ---------DNVRNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISKPTF 155
                      ++R  K +  + ++    +  + QF+K  + + +C  CK  +P   +  F
Sbjct: 1101 VLQNHKISAGDIRKGKHEGASEMR----RDLVAQFMKDIVTSRQCSRCKGISPSYRRDRF 1156

Query: 156  GWI-----------HMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHS 204
              +            M    H  +R  L      G   S    ++ +   +D+D     S
Sbjct: 1157 VKVFEKPLSSKEQAKMAVSGHFKVRDALTIRRKPGHNESDAASDEGI---ADIDLDSASS 1213

Query: 205  FNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVK-------DIIEK---L 254
             + T     D              SG   Q++  +G L P   K       +++E+   L
Sbjct: 1214 DSETVEKDVDELDE----------SGKLVQREAANGSLAPDAAKQRYISAQEVLERLRLL 1263

Query: 255  WENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDS-VMEHPQTVLL 313
            + NE E+   I   + Q  G +    +FF+  +LVPP K+R  ++ GDS V E  Q  L 
Sbjct: 1264 FHNEQEVLQLIYSSRPQAKGTQTSPDMFFIEALLVPPNKYRPEARTGDSEVTESQQNSLY 1323

Query: 314  SKVLQANIYLANAY----VNQPDN-------AKVIVA---RWMNLQQSVNVLFD------ 353
              VL A+  +A+ +        D        A+ I+A    W  LQ +VN L D      
Sbjct: 1324 KGVLGASFKVADIHREILTAGTDRRRQTGLAARDIIALHEAWTELQSTVNSLIDSSKNPV 1383

Query: 354  -GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYF 412
             G+NA   + +  GI Q LEKKEGLFR+ +MGKRVN+A RSVISPDP +  NEIG+PP F
Sbjct: 1384 QGQNA---KRIEEGIKQKLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVF 1440

Query: 413  ALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM--RISIGRKL 470
            A +LTYPE VT  N   L+ ++ING +  PGA+   ++   +    +K +  R+++  +L
Sbjct: 1441 ARKLTYPEPVTSHNFKVLQQAVINGTDKWPGASAIENENGQVVNLRSKSLEERMALANQL 1500

Query: 471  DTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTL 530
                  +      S +   GK VYRHL +GDVVL+NRQPTLHKPSIM H VRVL GEKT+
Sbjct: 1501 ------LAPTSNSSSSGMRGKKVYRHLSNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTI 1554

Query: 531  RMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHI 590
            RMHYANC+TYNADFDGDEMN+HFPQ+E++R EA  + + ++QY+  + G PLR LIQDH+
Sbjct: 1555 RMHYANCNTYNADFDGDEMNMHFPQNEIARVEALQLADTDHQYLSGTQGKPLRGLIQDHL 1614

Query: 591  VSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIW 650
              +  L  KDTF  R  + +L+YS+    SG        G+R+       E++P  PAI 
Sbjct: 1615 SISVALCSKDTFFPRGAYQELIYSALRPGSG-----HIMGERI-------ELVP--PAIL 1660

Query: 651  KPEPLWTGKQVITAVLNHI 669
            KP P WTGKQVIT +L +I
Sbjct: 1661 KPVPRWTGKQVITTILKNI 1679



 Score =  361 bits (927), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 217/493 (44%), Positives = 288/493 (58%), Gaps = 39/493 (7%)

Query: 748  SEEKLLIYKND-LVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
            +EE   I+++  LV G++DKA    +  G +H + E+YG+  AG LLS++ RL T  L M
Sbjct: 1704 TEEGTAIFQDGVLVTGILDKAHLGPSSGGFIHAIHEVYGAAVAGKLLSSMGRLLTKLLNM 1763

Query: 805  HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEI--DPIKLKSEIEK 862
              FTCG+DDL +  + E  R+  L  +E  G  V    + L++      DP +L   +E+
Sbjct: 1764 RAFTCGMDDLRLTTEGEANRRRELKAAEGAGLEVAAAYVSLQEQKPTSKDP-ELLHRLEE 1822

Query: 863  AMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV 922
             MR   D+     D+ M ++ +   SS V    L +GL K    N +  MTTSGAKG  V
Sbjct: 1823 VMRD--DSKQEGLDVLMNNK-SSSVSSGVTKACLPDGLEKAFPHNHMQSMTTSGAKGGGV 1879

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N   IS +LGQQ LEG+RVP MVSGK+LP F  +D + RAGG+I++RFLTG+RPQEYYFH
Sbjct: 1880 NANLISCNLGQQVLEGRRVPLMVSGKSLPCFPEYDSSLRAGGYIVNRFLTGIRPQEYYFH 1939

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVH 1042
             MAGREGL+DTAVKTSRSGYLQRCLIK +E LK++YD SVRDADGS+VQF YGEDG+DV 
Sbjct: 1940 HMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVAYDTSVRDADGSVVQFLYGEDGLDVT 1999

Query: 1043 QTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ------EMIYKKCSGQL---- 1092
            +  +++ F  L  R         KF D  +      R +       MI K  S       
Sbjct: 2000 KQKYLTDFSFL-LRNLDSQMSYMKFSDPRTAALFEHREEFAKQTKRMIKKAGSSPTFAEE 2058

Query: 1093 -------DASNAYIM--ELPDALKDNAEKFADKFLSNE----------MAKQDFLKLVKH 1133
                    A +AY M  +   A+     +  D+ + ++          M ++   ++   
Sbjct: 2059 PVNSLVNPARHAYAMSEKFFSAMSTYIRENKDRLVKDKKEQQTGGPAAMGRKSVERVFAA 2118

Query: 1134 KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKD 1193
            K++ S  +PGE VG++A QSVGEPSTQMTLNTFHLAG    NVTLGIPRL+EIL  AS  
Sbjct: 2119 KYLRSQVEPGESVGIVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASAK 2178

Query: 1194 IKTPVITCPLLVG 1206
            I TP +T  L  G
Sbjct: 2179 ISTPAMTLVLKEG 2191


>gi|402077501|gb|EJT72850.1| hypothetical protein GGTG_09702 [Gaeumannomyces graminis var. tritici
            R3-111a-1]
          Length = 1461

 Score =  397 bits (1021), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 314/1009 (31%), Positives = 479/1009 (47%), Gaps = 178/1009 (17%)

Query: 266  SDMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVM-EHPQTVLLSKVLQANIYL 323
            +D +  G     G    FL   L  PPI  R PS   D+   E   T  L++++     +
Sbjct: 248  TDCELLGLDPSEGRPEMFLWQYLPAPPICIR-PSVAQDNASNEDDITTKLAEIVHIAGLI 306

Query: 324  ANAYVNQPDNAKVIVARWMNLQ----QSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFR 379
              A +++    + I+ +W  LQ      VN    G    G   M  G CQ L+ K+G FR
Sbjct: 307  RGA-LSKGHTIQTIMEQWEFLQLQIAMYVNSEVPGLGQPGFGKMTRGFCQRLKGKQGRFR 365

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
              L GKRV+++ R+VISPDP L ++++ IP   A  LTYPERV   N+ KL+  + NG  
Sbjct: 366  GNLSGKRVDFSGRTVISPDPNLGIDQVAIPILVAKNLTYPERVQFQNLAKLQQCVRNGPA 425

Query: 440  IHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQD 499
              PGA   + +        + KM +  G + D +           +N   G +V RH++D
Sbjct: 426  TWPGAQAVIKQDGD----GDYKMNLKFGNRDDVA-----------NNLRFGDVVERHIED 470

Query: 500  GDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVS 559
            GD+VL NRQP+LHK SIM+H+V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +
Sbjct: 471  GDIVLFNRQPSLHKLSIMSHLVKV-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEA 529

Query: 560  RAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSS 619
            RAEA N++   +    P NG+P+ +  QD I +A LL+ KD F +R  F  L        
Sbjct: 530  RAEAINLMGVKHNLATPKNGEPIIAATQDFITAAYLLSSKDNFFSRKVFTYLC------- 582

Query: 620  SGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVE 679
                       Q +++   E   LP  PAI KP  LWTGKQ+   ++      RP     
Sbjct: 583  -----------QHMMVDGKEYLELP-PPAILKPCALWTGKQIFNVLM------RP----- 619

Query: 680  RGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEK 739
                            +KQS  K N   K  +                + +PGE  +   
Sbjct: 620  ----------------NKQSPVKVNLDAKCRE---------------YKVRPGEAPDLCP 648

Query: 740  NKSKEKELSEEKLLIYKNDLVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSR 796
            N        +  L+I  ++++ GV+DK+         + + +   +G + A T ++ L++
Sbjct: 649  N--------DGWLIIRNSEIMCGVMDKSIVGGGKKDSIFYVILRDFGPDYAVTAMNRLAK 700

Query: 797  LFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRV--HLEALELEDGAEIDPI 854
            L    L   GF+ GV D+    +   E+   +  ++     +    +A +L+  A  D  
Sbjct: 701  LCARTLGNRGFSIGVGDVFPTMELRVEKDKLVADADRKCDDLIDTFKAGKLQKAAGCD-- 758

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
             L+  +E ++ G            + S++ +   +  +  L        +  N   +M  
Sbjct: 759  -LEQTLENSISG------------ILSRVRQQAGAKCVETL--------SRNNAPLIMAK 797

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SG+KGS++N  Q+ + +GQQ + G+RVP     ++LP FH     P + GF+ + F +GL
Sbjct: 798  SGSKGSEINVAQMVAAVGQQIIGGQRVPDGFQDRSLPHFHKNSRQPPSKGFVANSFYSGL 857

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
             P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR + G IVQF +
Sbjct: 858  LPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSGGGIVQFQF 917

Query: 1035 GEDG---VDVHQTSFISKFD-------AL----AAR---------------ERGRGR-GR 1064
            G D    VD+  T+    FD       AL    A R               E  R R GR
Sbjct: 918  GADKLDPVDMEGTAVPVHFDRTWTHSEALTWDNAERSLLPWEILQLCDQVIETQRQRYGR 977

Query: 1065 NKFCDKGSHTFVMGRNQEM------------IYKKCSGQLDASNAYIMELPDALKDNAEK 1112
                +K    +   R++ +            +Y    G+ D   A   ++  +   + ++
Sbjct: 978  YDLVNKSPLPYDDQRDRSIDEHESARNFWKSVYGYIQGRADRLEAIRRQIGLSPGGSDDR 1037

Query: 1113 FADKFLS--------NEMAKQD------FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPS 1158
             AD  ++        N +AK        FL L + K   +  +PG  VG + +QS+GEP 
Sbjct: 1038 GADDSIADPARVAQVNRVAKVSQTTLLKFLNLCQEKHERAKVEPGHAVGAVGAQSIGEPG 1097

Query: 1159 TQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
            TQMTL TFH AG   M++T G+PR++EI+  ASK I TPVITCPL+  K
Sbjct: 1098 TQMTLKTFHFAGVAGMSITQGVPRIKEIIN-ASKSISTPVITCPLMNNK 1145



 Score = 43.9 bits (102), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TC Q    C GHFGH+ L +P ++      + T+L+ IC  C     +  E  K + +
Sbjct: 78  CQTCAQPLQNCSGHFGHVRLPLPAFHIGYLRFVQTILQNICKDCARVLLTEPERRKFLTE 137

Query: 61  L 61
           L
Sbjct: 138 L 138


>gi|169780898|ref|XP_001824913.1| DNA-directed RNA polymerase III subunit RPO31 [Aspergillus oryzae
            RIB40]
 gi|83773653|dbj|BAE63780.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|391867224|gb|EIT76474.1| RNA polymerase III, large subunit [Aspergillus oryzae 3.042]
          Length = 1447

 Score =  397 bits (1021), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 317/1002 (31%), Positives = 470/1002 (46%), Gaps = 181/1002 (18%)

Query: 265  ISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPSKGGD-SVMEHPQTVLLSKVLQAN 320
            ISD   +  G   K+A   +F    +  PP+  R PS G D S  E   T  L  ++Q+N
Sbjct: 247  ISDTDCELLGLDPKEARPEMFLWQYIPAPPVCIR-PSVGQDASSTEDDLTAKLGDIVQSN 305

Query: 321  IYLANAYVN-QPDNAKVIVARWMNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGL 377
            I L NA +   P    +    +M LQ +V +  D  G N A       G  Q L+ K+G 
Sbjct: 306  INLKNALLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRLKGKQGR 365

Query: 378  FRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIING 437
            FR  L GKRV+++ R+VISPDP L V+E+ +P   A  +TYPE VT +N  KL+  + NG
Sbjct: 366  FRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNG 425

Query: 438  AEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
             +  PGA + + K ST       K  +  G     S   I      +D   EG +V RH+
Sbjct: 426  TKKWPGANYLVKKGSTF------KTFLKYG-----SLNMI------ADQLQEGDVVERHI 468

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            +DGD+VL NRQP+LHK SI++H  +V +  +T R++   C+ YNADFDGDEMN+H PQ E
Sbjct: 469  EDGDIVLFNRQPSLHKLSILSHFAKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTE 527

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL-LYSSG 616
             +RAEA  ++   N    P NG+P+ S IQD I +A +L+ KD F +R  F Q+ LY  G
Sbjct: 528  EARAEAMELMGVKNNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLG 587

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
              +     F   P                 PA+ KP+ LWTGKQV   +L    +  P  
Sbjct: 588  PET----RFDLPP-----------------PAVLKPQMLWTGKQVFN-ILMRPNKDDPVM 625

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
            V                N D      K  K                     +G+P     
Sbjct: 626  V----------------NLDAACREYKPPK---------------------DGRP----- 643

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSA 793
                  K+ +  +  L+I  ++++ GV+DKA         + + +   +G   A   ++ 
Sbjct: 644  ------KDLDPKDGWLVIRNSEVMCGVMDKATIGSGKKDNVFYVMLRDFGPPAAAEGMNR 697

Query: 794  LSRLFTVFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGA 849
            LSRL   +    GF+ G+ D+     +L+ K    +      +E+  +     LE   G 
Sbjct: 698  LSRLSARWFTNMGFSIGITDVYPSEKLLQSKHDLVETAYAQCDEVIAQYKAGTLETFPGC 757

Query: 850  -EIDPI--KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
             E+  +  KL   + K  +  GD  +A        QL+K+ S  +               
Sbjct: 758  DELQTMENKLSGILSKVRQQAGDECIA--------QLSKYNSPLI--------------- 794

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
                 M TSG+KGS +N  Q+ + +GQQ + G+RV      +TLP F      P + GF+
Sbjct: 795  -----MATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFV 849

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
             + F +GL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++ 
Sbjct: 850  RNSFFSGLEPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSS 909

Query: 1027 GSIVQFCYGEDG---VDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEM 1083
            G IVQF YG+D    VD+   +    FD             ++   + +   +M   +EM
Sbjct: 910  GHIVQFQYGDDKLDPVDMEGKAKPVHFDRTFIHSEATTYDNDERSLQPAE--IMEVCEEM 967

Query: 1084 IYKKCS------------GQLDASNAYIMELPDA------LKDNAEKFADKFLS------ 1119
            + K+ +            G +D SN  + +   A      ++      ADK +S      
Sbjct: 968  LSKERAKLVRKDLLDVELGYMDRSNHGVDQFESARDFLESIQQYVSTKADKLISRGGDID 1027

Query: 1120 ----------------NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTL 1163
                             E   + F+     K+  +  +PG  VG + +QS+GEP TQMTL
Sbjct: 1028 PSDERSQQGLNHTGKLTEKTLRTFISACLMKYKKAQVEPGHAVGAVGAQSIGEPGTQMTL 1087

Query: 1164 NTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLV 1205
             TFH AG   M++T G+PR++EI+  ASK+I TPV++C L+ 
Sbjct: 1088 KTFHFAGVAGMSITQGVPRIKEIIN-ASKEISTPVVSCELVT 1128



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF 47
           C+TCG    +C GHFGH+ LV+P ++   F  + T+L+ IC  C H 
Sbjct: 78  CQTCGGALQVCNGHFGHVKLVLPSFHVGYFKRVITILQEICKECSHI 124


>gi|115390328|ref|XP_001212669.1| DNA-directed RNA polymerase III largest subunit [Aspergillus terreus
            NIH2624]
 gi|114195065|gb|EAU36765.1| DNA-directed RNA polymerase III largest subunit [Aspergillus terreus
            NIH2624]
          Length = 1450

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 316/1000 (31%), Positives = 474/1000 (47%), Gaps = 177/1000 (17%)

Query: 265  ISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQAN 320
            ISD   +  G   ++A   +F    +  PP+  R PS G D+   E   T  L  ++Q+N
Sbjct: 247  ISDTDCELLGLNPREARPEMFLWQFIPAPPVCIR-PSVGQDAASTEDDLTAKLGDIVQSN 305

Query: 321  IYLANAYVN-QPDNAKVIVARWMNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGL 377
            I L N+ +   P +  +    +M LQ +V +  D  G N A       G  Q L+ K+G 
Sbjct: 306  INLKNSLLKGAPVHTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRLKGKQGR 365

Query: 378  FRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIING 437
            FR  L GKRV+++ R+VISPDP L V+E+ +P   A  +TYPE VT +N  KL+  + NG
Sbjct: 366  FRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNG 425

Query: 438  AEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
             +  PGA + + K +      + K  +  G                +D   EG +V RH+
Sbjct: 426  TKKWPGANYLMKKGA------DYKTFLKYG-----------NLNMIADQIQEGDVVERHI 468

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            +DGD+VL NRQP+LHK SI++H  +V +  +T R++   C+ YNADFDGDEMN+H PQ E
Sbjct: 469  EDGDIVLFNRQPSLHKLSILSHFAKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTE 527

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL-LYSSG 616
             +RAEA  ++   N    P NG+P+ S IQD I +A +L+ KD F +R  F QL LY  G
Sbjct: 528  EARAEAMELMGVKNNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQLCLYMLG 587

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
              +     F   P                 PA+ KP+ LWTGKQV   +L    +  P  
Sbjct: 588  PET----RFDLPP-----------------PAVLKPQMLWTGKQVFN-ILMRPNKDDPVL 625

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
            V                N D      K  K                     +G+P     
Sbjct: 626  V----------------NLDAACREFKQPK---------------------DGRP----- 643

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSA 793
                  K+ +  +  L+I  ++++ GV+DK+         + + +   YG   A   ++ 
Sbjct: 644  ------KDLDPKDGWLVIRNSEMMCGVMDKSTIGSGKKDNVFYIMLRDYGPAAAAEGMNR 697

Query: 794  LSRLFTVFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGA 849
            LSRL   +    GF+ G+ D+     +L+ K    +      +E+  +     LE   G 
Sbjct: 698  LSRLSARWFTNMGFSIGITDVYPSQKLLQSKHDLVETAYAQCDEVIAKYKAGTLEKYPGC 757

Query: 850  -EIDPI--KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
             E+  +  +L   + K  +  GD  +A        QL+K+ S  +               
Sbjct: 758  DELQTMENQLSGILSKVRQQAGDECIA--------QLSKYNSPLI--------------- 794

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
                 M TSG+KGS +N  Q+ + +GQQ + G+RV      +TLP F      P + GF+
Sbjct: 795  -----MATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFV 849

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
             + F +GL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++ 
Sbjct: 850  RNSFFSGLEPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSKYDDTVRNSS 909

Query: 1027 GSIVQFCYGEDGVD----------VH-QTSFI----SKFD----------ALAARERGRG 1061
            GSIVQF YG+D +D          VH   +FI    + +D           +   E    
Sbjct: 910  GSIVQFQYGDDKLDPVDMEGKAKPVHFDRTFIHSETTTYDNDERSLLPHEIMEVCEEMLS 969

Query: 1062 RGRNKFCDK---GSHTFVMGRNQEMI--YKKCSGQLDASNAYIMELPDAL------KDNA 1110
            + R K   K   G+    M R+   I  Y+     L++   Y+    D L       D  
Sbjct: 970  KERAKLVRKDLMGNELGYMDRSDHGIDQYESARDFLESIQQYVQTKADRLISRGGDIDPN 1029

Query: 1111 EKFADKFLSN-----EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNT 1165
            ++ + K L++     E   + F+     K+  +  +PG  VG + +QS+GEP TQMTL T
Sbjct: 1030 DERSQKGLNHTGKLTETTLRTFINACLMKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKT 1089

Query: 1166 FHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLV 1205
            FH AG   M++T G+PR++EI+  ASK+I TPV+ C L+ 
Sbjct: 1090 FHFAGVAGMSITQGVPRIKEIIN-ASKEISTPVVACELVT 1128



 Score = 48.1 bits (113), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TCG     C GHFGH+ LV+P ++   F  + T+L+ IC  C
Sbjct: 78  CQTCGLDLKACNGHFGHVRLVLPAFHVGYFKRVITILQEICKEC 121


>gi|302661310|ref|XP_003022324.1| hypothetical protein TRV_03535 [Trichophyton verrucosum HKI 0517]
 gi|291186264|gb|EFE41706.1| hypothetical protein TRV_03535 [Trichophyton verrucosum HKI 0517]
          Length = 1444

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 299/978 (30%), Positives = 474/978 (48%), Gaps = 171/978 (17%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDS-VMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
            F    +  PP+  R PS G +    E   T  L  ++Q+N+ L  A +++    + I+  
Sbjct: 267  FLWQFIPAPPVPIR-PSVGQEGPSTEDDLTAKLGDIVQSNLNLKMA-LDKGAPVQTIIEC 324

Query: 341  W--MNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            W  M LQ +V +  D  G      +    G+CQ L+ K+G FR  L GKRV+++ R+VIS
Sbjct: 325  WDYMQLQIAVYINSDIPGLQNTDSKKTIRGLCQRLKGKQGRFRGNLSGKRVDFSGRTVIS 384

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PDP L ++E+ +P   A+ +TYPERVT +N  KLR  I NG +  PGA + + + ++ RL
Sbjct: 385  PDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQRIRNGTKTWPGANYLIKEGNSFRL 444

Query: 457  PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
                     I  +L                  EG +V RHL++GD+VL NRQP+LHK SI
Sbjct: 445  FLKYGNLNMIANQLR-----------------EGDIVERHLENGDIVLFNRQPSLHKLSI 487

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            ++H V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA  ++   +    P
Sbjct: 488  LSHFVKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKSNLATP 546

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
             NG+P+ + IQD I +A LL+ KD F +R  F Q+  S                  +L S
Sbjct: 547  KNGEPIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLS------------------MLDS 588

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
             +  E+ P  PA  KP+ LWTGKQV + ++      RP                   N D
Sbjct: 589  STRFELPP--PATIKPQMLWTGKQVFSVLM------RP-------------------NKD 621

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEK--LLI 754
                             K++ D + ++ ++V+G+P             ++L E    L I
Sbjct: 622  CPV--------------KVNLDAACRQLKLVKGQP-------------RDLCENDGWLCI 654

Query: 755  YKNDLVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
              ++++ GV DK+         +   +Q  +G   A   ++ LS+L   +L   GF+ G+
Sbjct: 655  RNSEMLCGVADKSTIGAGKKDNIFFVIQRDFGYAAAAEAMNRLSKLSARWLTNKGFSIGI 714

Query: 812  DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAA 871
             D+   +   + +   ++ + +                + D +   +  EK   G  D+ 
Sbjct: 715  TDVYPGESLVKLKDTLINTAFQ----------------QCDDLIAAASKEKPQMGKSDSR 758

Query: 872  VAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK-NWISLMTTSGAKGSKVNFQQISSH 930
                + ++T  LNK      + +   E  +    K N   +M T G+KGS +N  Q+ + 
Sbjct: 759  QTA-ENEITGILNK------VRQQAGEYCISEVSKHNAPLIMATCGSKGSNINVSQMVAV 811

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            +GQQ +E  RV +    +TLP F        A GF+ + F +GL P E+ FH M+GREGL
Sbjct: 812  VGQQSIENARVSKGFQDRTLPHFARHSQHALAKGFVRNSFFSGLTPTEFLFHAMSGREGL 871

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE---DGVDVHQTSFI 1047
            +DTAVKT+ +GY+ R L+K+LE L   YD +VRD+   I+QF YG+   D V++  ++  
Sbjct: 872  IDTAVKTAETGYMSRRLMKSLEDLSTRYDNTVRDSSSFIIQFQYGDDQLDPVNMEASAKP 931

Query: 1048 SKFDALAARERGRGRGRNKFCDKG-SHTFVMGRNQEMI------------------YKK- 1087
              FD            ++   +KG S   ++   +E+I                  YK  
Sbjct: 932  VHFDRTFTHAESTTYDKD---EKGLSADEILALCEELIAPERKKLVRYDLLGNTLSYKAE 988

Query: 1088 ---CSGQLDASNAYIMEL------------PDALKDNAEKFADKFLSNEMAK--QDFLKL 1130
                + Q +++  ++  +            P   ++  E+ A    S   A+  + F+  
Sbjct: 989  NDFATDQWESNRDFLSSIEEYVAAKAAQLRPSDNEEGKEQMAFTHTSKISARTLKAFITS 1048

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
               K++ +  +PG  +G + +QS+GEP TQMTL TFH AG   M++T G+PR++EI+  A
Sbjct: 1049 CLDKYMRAHVEPGHSIGAIGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN-A 1107

Query: 1191 SKDIKTPVITCPLLVGKT 1208
            SK+I TP+ITC  LV KT
Sbjct: 1108 SKEISTPIITCE-LVNKT 1124


>gi|451856837|gb|EMD70128.1| hypothetical protein COCSADRAFT_177734 [Cochliobolus sativus ND90Pr]
          Length = 1473

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 324/1035 (31%), Positives = 497/1035 (48%), Gaps = 185/1035 (17%)

Query: 244  PSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS---KG 300
            P  V ++ +K+   + EL + I +         A   +     + VPP+  R PS   +G
Sbjct: 237  PLRVLNLFKKISPEDCELLAMIPE--------DARPEMLIWEYMPVPPVALR-PSVMQEG 287

Query: 301  G---DSVMEHPQTVL-LSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD--- 353
            G   D V      +  +S +++A   LA  +  Q     +++ +W  LQ  + +  +   
Sbjct: 288  GATEDDVTNKIGDICHISSIIRAG--LARGFPLQ-----ILMEQWDFLQLQIAMYINSDA 340

Query: 354  -GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYF 412
             G    G +    G  Q L+ K G FRQ L GKRV+++ R+VI PDP L+++E+ +P   
Sbjct: 341  PGLKQQGLQKTMRGFSQRLKGKGGRFRQNLSGKRVDFSGRTVIGPDPNLSIDEVAVPERI 400

Query: 413  ALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK---KMRISIGRK 469
            A  LTYPE+VT +N+ KLR  + NG+  +PGA + LD        PNK   K+ +    +
Sbjct: 401  AKNLTYPEKVTRYNIDKLRRLVRNGSNKYPGANYILDDQG-----PNKDRGKISLIALSR 455

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
             DT +G  ++    S     G +V RH++DGD+VL NRQP+LHK SI++H  +V +  +T
Sbjct: 456  FDT-KGERLEGA--SKRLKIGDIVERHIEDGDIVLFNRQPSLHKLSILSHRAKV-RPWRT 511

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++   C+ YNADFDGDEMN+H PQ E +R EA  ++        P NG P+ + IQD 
Sbjct: 512  FRLNECVCNPYNADFDGDEMNLHVPQTEEARTEATELMGVKYNLATPKNGTPIIAAIQDF 571

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            I +A LL+ K+ F +R  FCQ++       +G G+F    G+R  I     E+ P  P +
Sbjct: 572  ITAAYLLSNKNNFFDRRTFCQIV---NYMFNGEGAFDPDTGKRHPI-----EIPP--PVV 621

Query: 650  WKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKL 709
            WKP+ LWTGKQV   ++    + R    +E   K     FK     D+  D  +ND    
Sbjct: 622  WKPQALWTGKQVFNLLMRPYKKCRVLVNLEAACKQ----FKN--TPDQPPDLNENDA--- 672

Query: 710  SKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF 769
                                                      L+I  ++++ GV+DKA  
Sbjct: 673  -----------------------------------------YLVIRNSEVMCGVMDKATV 691

Query: 770  AD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKN 826
             D     + + +   +G + A   ++ LS+L   +L  +GF+ G+ D+   +   +++++
Sbjct: 692  GDGKKDSVFYVMMRDFGPDHAVQGMNRLSKLSARWLSNNGFSLGISDVTPGEKLNKKKQD 751

Query: 827  HLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKH 886
             +   E   K   L     E   + DP   + +  +   GG  + V            + 
Sbjct: 752  LVQ--EAYAKCDKLIKDFKEGKLQRDPGCDEEQTMENRIGGILSGV------------RQ 797

Query: 887  TSSSVINELLSEGLLKPTGKNWIS--LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRM 944
             +  +  E LS          W S  LM   G+KGS +N  Q+ + +GQQ + G RV   
Sbjct: 798  AAGDICFEELSR---------WNSPLLMAKCGSKGSNINVSQMVASVGQQMIGGARVADG 848

Query: 945  VSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQ 1004
               +TLP F      P + GF+ + F +GL P E+ FH M+GREGLVDTAVKT+ +GY+ 
Sbjct: 849  FHHRTLPHFPKAARQPASKGFVSNSFFSGLTPSEFIFHAMSGREGLVDTAVKTAETGYMS 908

Query: 1005 RCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD----------VH-----QTSFISK 1049
            R L+K+LE L   YD +VR++ G++VQF YG+D +D          VH       +  S 
Sbjct: 909  RRLMKSLEDLSAQYDDTVRNSSGTVVQFQYGDDNLDPVDMEGKAKPVHFDRTFSHAVTST 968

Query: 1050 FDALAA-------RERGRGR---GRNKF----------------CDKG-----SHTFVMG 1078
            +D   +       RE    R    RNK+                 D+G     S    + 
Sbjct: 969  WDNSESSLTPQEVREYTEARLNAQRNKYPRYALDGVTRLEYRDQTDRGIDQKESMRDFLD 1028

Query: 1079 RNQEMIYKKCSGQLDASNAYI-MELPDALKD------NAEKF--ADKFLS-NEMAKQDFL 1128
              Q+ ++KK   +L+ + AY+ +  P+  KD      +AEK+  AD     +E A   F+
Sbjct: 1029 TVQDYVFKKAQ-KLETTLAYLGIVQPNDRKDKKQSAADAEKYSLADGIAKISERALDTFI 1087

Query: 1129 KLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILT 1188
             L   K+  S  QPG  VG + +QS+GEP TQMTL TFH AG   M++T G+PR++EI+ 
Sbjct: 1088 TLCLTKYHRSRVQPGHAVGAIGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN 1147

Query: 1189 IASKDIKTPVITCPL 1203
             AS  I TPVI C L
Sbjct: 1148 -ASSTISTPVIACEL 1161



 Score = 41.2 bits (95), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 23/44 (52%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TCG+    C GHFGHI L +P ++      +  +L  IC  C
Sbjct: 78  CATCGEGLDTCNGHFGHIKLALPAFHVGYLKHIIEVLNCICKDC 121


>gi|238504894|ref|XP_002383676.1| DNA-directed RNA polymerase III largest subunit, putative
            [Aspergillus flavus NRRL3357]
 gi|220689790|gb|EED46140.1| DNA-directed RNA polymerase III largest subunit, putative
            [Aspergillus flavus NRRL3357]
          Length = 1436

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 317/1002 (31%), Positives = 470/1002 (46%), Gaps = 181/1002 (18%)

Query: 265  ISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPSKGGD-SVMEHPQTVLLSKVLQAN 320
            ISD   +  G   K+A   +F    +  PP+  R PS G D S  E   T  L  ++Q+N
Sbjct: 247  ISDTDCELLGLDPKEARPEMFLWQYIPAPPVCIR-PSVGQDASSTEDDLTAKLGDIVQSN 305

Query: 321  IYLANAYVN-QPDNAKVIVARWMNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGL 377
            I L NA +   P    +    +M LQ +V +  D  G N A       G  Q L+ K+G 
Sbjct: 306  INLKNALLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRLKGKQGR 365

Query: 378  FRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIING 437
            FR  L GKRV+++ R+VISPDP L V+E+ +P   A  +TYPE VT +N  KL+  + NG
Sbjct: 366  FRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNG 425

Query: 438  AEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
             +  PGA + + K ST       K  +  G     S   I      +D   EG +V RH+
Sbjct: 426  TKKWPGANYLVKKGSTF------KTFLKYG-----SLNMI------ADQLQEGDVVERHI 468

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            +DGD+VL NRQP+LHK SI++H  +V +  +T R++   C+ YNADFDGDEMN+H PQ E
Sbjct: 469  EDGDIVLFNRQPSLHKLSILSHFAKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTE 527

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL-LYSSG 616
             +RAEA  ++   N    P NG+P+ S IQD I +A +L+ KD F +R  F Q+ LY  G
Sbjct: 528  EARAEAMELMGVKNNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLG 587

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
              +     F   P                 PA+ KP+ LWTGKQV   +L    +  P  
Sbjct: 588  PET----RFDLPP-----------------PAVLKPQMLWTGKQVFN-ILMRPNKDDPVM 625

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
            V                N D      K  K                     +G+P     
Sbjct: 626  V----------------NLDAACREYKPPK---------------------DGRP----- 643

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSA 793
                  K+ +  +  L+I  ++++ GV+DKA         + + +   +G   A   ++ 
Sbjct: 644  ------KDLDPKDGWLVIRNSEVMCGVMDKATIGSGKKDNVFYVMLRDFGPPAAAEGMNR 697

Query: 794  LSRLFTVFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGA 849
            LSRL   +    GF+ G+ D+     +L+ K    +      +E+  +     LE   G 
Sbjct: 698  LSRLSARWFTNMGFSIGITDVYPSEKLLQSKHDLVETAYAQCDEVIAQYKAGTLETFPGC 757

Query: 850  -EIDPI--KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
             E+  +  KL   + K  +  GD  +A        QL+K+ S  +               
Sbjct: 758  DELQTMENKLSGILSKVRQQAGDECIA--------QLSKYNSPLI--------------- 794

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
                 M TSG+KGS +N  Q+ + +GQQ + G+RV      +TLP F      P + GF+
Sbjct: 795  -----MATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFV 849

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
             + F +GL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++ 
Sbjct: 850  RNSFFSGLEPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSS 909

Query: 1027 GSIVQFCYGEDG---VDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEM 1083
            G IVQF YG+D    VD+   +    FD             ++   + +   +M   +EM
Sbjct: 910  GHIVQFQYGDDKLDPVDMEGKAKPVHFDRTFIHSEATTYDNDERSLQPAE--IMEVCEEM 967

Query: 1084 IYKKCS------------GQLDASNAYIMELPDA------LKDNAEKFADKFLS------ 1119
            + K+ +            G +D SN  + +   A      ++      ADK +S      
Sbjct: 968  LSKERAKLVRKDLLDVELGYMDRSNHGVDQFESARDFLESIQQYVSTKADKLISRGGDID 1027

Query: 1120 ----------------NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTL 1163
                             E   + F+     K+  +  +PG  VG + +QS+GEP TQMTL
Sbjct: 1028 PSDERSQQGLNHTGKLTEKTLRTFISACLMKYKKAQVEPGHAVGAVGAQSIGEPGTQMTL 1087

Query: 1164 NTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLV 1205
             TFH AG   M++T G+PR++EI+  ASK+I TPV++C L+ 
Sbjct: 1088 KTFHFAGVAGMSITQGVPRIKEIIN-ASKEISTPVVSCELVT 1128



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF 47
           C+TCG    +C GHFGH+ LV+P ++   F  + T+L+ IC  C H 
Sbjct: 78  CQTCGGALQVCNGHFGHVKLVLPSFHVGYFKRVITILQEICKECSHI 124


>gi|241633681|ref|XP_002408700.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
            scapularis]
 gi|215501234|gb|EEC10728.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
            scapularis]
          Length = 1394

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 304/971 (31%), Positives = 465/971 (47%), Gaps = 172/971 (17%)

Query: 282  FFLGVVLVPPIKFRLPS-----KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
              L  + VPP+  R PS     K G +  E   TV L++++  N  +     +     ++
Sbjct: 250  LILTRIPVPPLCIR-PSVVSELKAGTN--EDDVTVKLTEIIFLNDVIQRHRASGA-KMQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +M       G  Q L+ K G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYVNSETSGIPLNMQPKKPTRGFVQRLKGKHGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++++G+P + A  LTYPERVT  N+  +R  + NG ++HPGA     + 
Sbjct: 366  RTVISPDPNLRIDQVGVPVHVAKILTYPERVTQHNLALMRTLVRNGPDVHPGANFLESRD 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            S  +       R  + ++L        +P         G +V RHL+DGDVVL NRQP+L
Sbjct: 426  SGFKRYLRYGNRDLLAQQL--------RP---------GDVVERHLRDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ +VL   +T R +   C+ YNADFDGDEMN+H PQ E +RAEA  ++    
Sbjct: 469  HKLSIMAHLAKVLP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALVLMGTRA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD I    LLT++D F +R +  QL            +     G+
Sbjct: 528  NLVTPRNGEPLIAAIQDFITGGYLLTQRDVFFDRAKAAQL------------AAYMLAGK 575

Query: 632  RVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKT 691
             V IS    E+ P  PAI KP  LWTGKQ+ + ++   +R  P     R           
Sbjct: 576  DVSIS---VELPP--PAIRKPVCLWTGKQIFSLIIRP-SRSCPVLASLRA---------- 619

Query: 692  RFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEK 751
                          KGK S T+                  GEE  A          ++  
Sbjct: 620  --------------KGK-SYTS------------------GEEMCA----------NDAY 636

Query: 752  LLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFT 808
            +LI  ++L+ G +DK      +   + + +   YG   A   +  L+R+ + ++Q  GF+
Sbjct: 637  VLIRNSELLSGTMDKGTMGSGSKNNIFYILLRDYGDQYAADAMWRLARIASFYMQNRGFS 696

Query: 809  CGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAM 864
             G+ D+     +LK K           EE  +++    L+ + G        + E  +A+
Sbjct: 697  IGIGDVTPGAGLLKAKHDLVSEGYARCEEYIQQLKCGKLQAQPGCN------EEETLEAV 750

Query: 865  RGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNF 924
                        +K  S +  H   + + EL           N   +M   G+KGS +N 
Sbjct: 751  -----------SLKELSVVRDHAGKACLRELHK--------TNSPLIMAVCGSKGSFINI 791

Query: 925  QQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCM 984
             Q+ + +GQQ + G RVP     ++LP F   D  P+A GF+ D F +GL P E++FH M
Sbjct: 792  SQMIACVGQQAISGHRVPNGFEDRSLPHFERNDRTPQARGFVEDSFYSGLTPTEFFFHTM 851

Query: 985  AGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ- 1043
             GREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR++ G IVQFCYG DG+D    
Sbjct: 852  GGREGLVDTAVKTAETGYMQRRLVKSLEDLCSHYDMTVRNSCGDIVQFCYGADGLDPPAM 911

Query: 1044 -------TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMI----YKKCSGQL 1092
                     F    +   AR+  RG    K  D+ +   ++   +E++    Y+ C    
Sbjct: 912  EGKDDTPVDFGRVMELTRARKPCRG---EKPLDQDA---ILRIGEEVLGGKSYEGCGESF 965

Query: 1093 -DASNAYIMELPDALKDNAEKFA---------------DKFLSNEMAKQDFLKLVKHKFV 1136
             +A + ++      +     +                 D+  ++++  + F    + K+ 
Sbjct: 966  REALSKFVHGYAAKVASTRARHGLDGSGDARPLVLWQLDRLTASQL--RSFFATCREKYF 1023

Query: 1137 LSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKT 1196
             ++ +P   VG + +QS+GEP+TQMTL TFH AG   MN+T G+PR++EI+  ASK+I T
Sbjct: 1024 RAVMEPATAVGAVCAQSIGEPATQMTLKTFHFAGVASMNITQGVPRIKEIIN-ASKNIST 1082

Query: 1197 PVITCPLLVGK 1207
            P+IT  L V +
Sbjct: 1083 PIITAALAVNQ 1093


>gi|358385218|gb|EHK22815.1| hypothetical protein TRIVIDRAFT_28982 [Trichoderma virens Gv29-8]
          Length = 1465

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 305/1018 (29%), Positives = 474/1018 (46%), Gaps = 180/1018 (17%)

Query: 254  LWE-NEFELCSFISDMQQQGFGKKAGH-SIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTV 311
            LW  N F++ +  +D +  G     G   +F    V  PP+  R       +  E   T 
Sbjct: 234  LWVLNHFKMIT-PTDCELLGLDPSEGRPEMFIWQFVPAPPVCIRPSVAQEGASTEDDLTA 292

Query: 312  LLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ----QSVNVLFDGKNAAGQRDMASGI 367
             L++++  +  +  A +N+    + I+ +W  LQ      VN    G N  G      G 
Sbjct: 293  KLAEIVYISGLIRTA-LNKGKPMQTIMEQWEYLQLQIAMYVNSDVPGLNQPGFGKSIRGF 351

Query: 368  CQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNV 427
            CQ L+ K+G FR  L GKRV+++ R+VISPDP L +N++ +P   A  LT+PERV   N+
Sbjct: 352  CQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLGINQVAVPQLVAKNLTFPERVQNQNL 411

Query: 428  VKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNE 487
             KLR  I+NG ++ PGA H +          N K  +  G +   +R   +         
Sbjct: 412  EKLRQCILNGPKVWPGANHVIKDNG------NWKQDLQFGDRALVARDLRI--------- 456

Query: 488  FEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGD 547
              G +V RHL+DGDVVL NRQP+LHK SIM+H+ ++ +  +T R++   C  YNADFDGD
Sbjct: 457  --GDIVERHLEDGDVVLFNRQPSLHKLSIMSHLAKI-RPWRTFRLNECVCGPYNADFDGD 513

Query: 548  EMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDE 607
            EMN+H PQ E +RAEA  ++   N    P NG+P+ +  QD I ++ LL+ KD F NR  
Sbjct: 514  EMNLHVPQSEEARAEAITLMGVKNNLATPKNGEPIIAATQDFITASYLLSSKDRFYNRKT 573

Query: 608  FCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLN 667
            F    Y       G+      P                 P+I KPE LWTGKQ+   ++ 
Sbjct: 574  FT---YICTHMMDGVTHLDLPP-----------------PSIIKPEALWTGKQIFNVLM- 612

Query: 668  HITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVV 727
                 RP                     +KQS    N   +  + +              
Sbjct: 613  -----RP---------------------NKQSPVLVNLDARCREYS-------------- 632

Query: 728  EGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGS 784
              +PG+  + + N        +  L+I  ++++ G +DK+         + + +   +G 
Sbjct: 633  -ARPGQCPDMDPN--------DAWLVIRNSEVMCGRMDKSIIGSGKKNSVFYIILRDFGP 683

Query: 785  NTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALE 844
            + A   ++ L++L    L   GF+ GV D+  + +  + R            R+  +A +
Sbjct: 684  DHAVMAMNRLTKLCARQLGNQGFSLGVGDVFPITELTKSR-----------DRLVQDAYD 732

Query: 845  LEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPT 904
              D          S IE   + G     A  DM+ T +++     S + +   +  +   
Sbjct: 733  KSD----------SLIE-TFKAGKLEKAAGCDMEQTLEISISGILSKVRQQAGQQCVDTL 781

Query: 905  GKNWISL-MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAG 963
             +N   L M  SG+KG  +N  Q+ + +GQQ + G+RVP     ++LP FH     P + 
Sbjct: 782  SRNNAPLIMANSGSKGLHINVAQMVACVGQQIIGGQRVPDGFQDRSLPHFHKNARQPASK 841

Query: 964  GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
            GF+ + F +GL P E++FH ++GREGL+DTAVKT+ +GY+ R L+K+LE L   YD +VR
Sbjct: 842  GFVRNSFYSGLFPTEFFFHAISGREGLIDTAVKTAETGYMSRRLMKSLEDLSTQYDNTVR 901

Query: 1024 DADGSIVQFCYGEDG---VDVHQTSFISKFD----------------------------A 1052
             + G+IVQF +G D    VD+  ++   +FD                            +
Sbjct: 902  TSSGTIVQFQFGADKLDPVDMEGSAVPVQFDRTWTHAESTTWDNNERSLLPHEILEVCSS 961

Query: 1053 LAARERGRGRGR----NKFCDKGS-------------------HTFVMGRNQEMIYKKCS 1089
            +  +E+ R + R    N   D                      +++V  R Q+M   +  
Sbjct: 962  MLDKEKLRYQRRRLVDNALLDYSDPTDEALDEHESARGFIETIYSYVSERAQKMSKARAL 1021

Query: 1090 GQLDASNAYIMELPDALKDNAEKFA--DKFLSNEMAK-QDFLKLVKHKFVLSLAQPGEPV 1146
              LD + +    + DA  D   + A  D+     M   Q F+K    ++  +  +PG  V
Sbjct: 1022 VGLDPNPSQDEVIADASADLKAQLARVDRVSKVSMTTLQRFVKECLERYHKAHVEPGHAV 1081

Query: 1147 GLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G + +QS+GEP TQMTL TFH AG   M++T G+PR++EI+  ASK+I TPVITCPLL
Sbjct: 1082 GAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN-ASKNISTPVITCPLL 1138



 Score = 42.4 bits (98), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC +    C GHFGH+ L +P ++      + T+L+ +C  C
Sbjct: 76  CGTCQEPLKFCIGHFGHVRLALPAFHIGYLRFIQTILQNVCKTC 119


>gi|146415288|ref|XP_001483614.1| DNA-directed RNA polymerase III largest subunit [Meyerozyma
            guilliermondii ATCC 6260]
          Length = 1379

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 302/989 (30%), Positives = 469/989 (47%), Gaps = 192/989 (19%)

Query: 290  PPIKFRLPSKGGDSVM-EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSV 348
            PP+  R PS   D+ + E   TV L++++  +  L  A + +  +   ++ +W  LQ SV
Sbjct: 193  PPVCIR-PSVMMDAQLNEDDITVKLTEIVWTS-SLIKAGIEKGISINNLMEQWDYLQLSV 250

Query: 349  NVLF--DGKNAAGQRDMASG---------ICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
             +    D  N A    M+ G          CQ L+ K+G FR  L GKRV+++ R+VISP
Sbjct: 251  AMYINSDAANPALLPSMSGGAKSAKPIRGFCQRLKGKQGRFRGNLSGKRVDFSARTVISP 310

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DP L ++E+ +P   A  LTYPE+ T +N  KL+  I+NG ++HPGA +       M+  
Sbjct: 311  DPNLRIDEVAVPDRVAKVLTYPEKCTRYNRKKLQQLILNGPDVHPGANY------VMKQN 364

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIM 517
               K  +  G K+  ++           N   G +V RH++DGDVVL NRQP+LH+ SI+
Sbjct: 365  EAAKRNLRFGDKVKLAK-----------NLHVGDVVERHIEDGDVVLFNRQPSLHRLSIL 413

Query: 518  AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
            +H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA N++   N  + P 
Sbjct: 414  SHYAKI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPK 472

Query: 578  NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISR 637
            +G+P+ +  QD I  + L++ KD+F +R  F QLL  S +S + L  F   P        
Sbjct: 473  SGEPIIAATQDFITGSYLISHKDSFYDRATFIQLL--SMMSDADL-QFDLPP-------- 521

Query: 638  SEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADK 697
                     P I+KP  LWTGKQV + ++                               
Sbjct: 522  ---------PTIFKPVMLWTGKQVFSLLM------------------------------- 541

Query: 698  QSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN 757
                      K +K + +  +   K K      PG   E   N        +  ++I  +
Sbjct: 542  ----------KPNKNSNVIVNLDAKNKAFTPPAPGYPNEMSPN--------DGYVIIRGS 583

Query: 758  DLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             ++ GV+DK    D   + + +T+   +G + A   ++ +++L   +L   GF+ G++D+
Sbjct: 584  QVLSGVMDKLTLGDGKKHSVFYTILRDFGPDAAAEAMNRMAKLCARYLGNRGFSIGINDV 643

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELED-----GAEIDPIKLKSEIEKAMRGGGD 869
                D +R++       E + ++ +L+  EL D       E  P   + +  +A  GG  
Sbjct: 644  TPGTDLKRKK-------ELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGG-- 694

Query: 870  AAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISS 929
                     + S++ +      INEL S         N   +M T G+KGS +N  Q+ +
Sbjct: 695  ---------LLSKVREQVGEVCINELDS--------ANAPLIMATCGSKGSTLNVSQMVA 737

Query: 930  HLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREG 989
             +GQQ + G RVP     ++LP F      P++ GF+ + F +GL P E+ FH ++GREG
Sbjct: 738  VVGQQIISGNRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREG 797

Query: 990  LVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV-------DVH 1042
            LVDTAVKT+ +GY+ R L+K+LE L   YD +VR++   IVQF YG DG+       D  
Sbjct: 798  LVDTAVKTAETGYMSRRLMKSLEDLSAQYDNTVRNSSNGIVQFTYGGDGLDPFDMEGDAR 857

Query: 1043 QTSFISKF-------------------------DALAARERGRGRGRN------------ 1065
              +F  ++                         D LA  E    R  N            
Sbjct: 858  PVNFARQWSHAYNVTYDVNDLGLLPYKILQATDDVLAPLEAKLIRYDNLGQPVTEGEADS 917

Query: 1066 -KFCD---------KGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFAD 1115
             +F D         K    FV+ +  ++   + S  L +  +      D ++ NA     
Sbjct: 918  EEFIDQNDAERAFYKSIREFVLEKASQLAEIRQSKNLKSGWSRPASKDDPVQLNAVNQLS 977

Query: 1116 KFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMN 1175
            K     + K  FL    +K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   MN
Sbjct: 978  KISLKAINK--FLDQCIYKYSRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMN 1035

Query: 1176 VTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            VTLG+PR++EI+  ASK I TP+I   L+
Sbjct: 1036 VTLGVPRIKEIIN-ASKVISTPIINGVLV 1063


>gi|380495147|emb|CCF32618.1| RNA polymerase Rpb1 [Colletotrichum higginsianum]
          Length = 1456

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 307/1016 (30%), Positives = 480/1016 (47%), Gaps = 183/1016 (18%)

Query: 257  NEFELCSFISDMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVM-EHPQTVLLS 314
            N F++ S  +D +  G     G    F+   L  PP+  R PS   D+   E   T  L+
Sbjct: 238  NLFKMIS-PTDCELLGLDPAEGRPEMFIWQFLPAPPVCIR-PSVAQDNASNEDDITTKLA 295

Query: 315  KVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD----GKNAAGQRDMASGICQL 370
             ++  +  + +A + +    + I+ +W  LQ  V +  +    G    G      G CQ 
Sbjct: 296  DIVWVSGMIRSA-LQKGSPVQTIMEQWEYLQLQVAMYVNSDVPGLQQPGFGKAVRGFCQR 354

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ K+G FR  L GKRV+++ R+VISPDP L ++++ +P   A  LTYPERV+ +N+ KL
Sbjct: 355  LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPQLVAKNLTYPERVSDYNIEKL 414

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
            ++ + NG  I PGA   + K          K+ +  G     +R  + Q  K  D     
Sbjct: 415  KECVRNGPSIWPGAQQVIKKDDG-----GYKISLKFG-----NRNQVAQDLKIGD----- 459

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
             +V RHL+D D+VL NRQP+LHK SIM+H+V+V +  +T R++   C  YNADFDGDEMN
Sbjct: 460  -VVERHLEDNDIVLFNRQPSLHKLSIMSHLVKV-RPWRTFRLNECVCGPYNADFDGDEMN 517

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E +RAEA N++   +    P NG+P+ +  QD I +A LL+ KD F +R  F  
Sbjct: 518  LHVPQTEEARAEAINLMGVKHNLATPKNGEPVIAATQDFITAAYLLSSKDNFFDRKTFTY 577

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            +                     ++  +   ++ P  PA+ KP+ LWTGKQV + ++    
Sbjct: 578  IC------------------MHMMDGKVHLDLPP--PAVLKPKALWTGKQVFSMMM---- 613

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
              RP                     +K S  K N   K                      
Sbjct: 614  --RP---------------------NKDSPVKINLDAKC--------------------- 629

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTA 787
               E +A   +  + +  +  L+I  ++++ GV+DK+   D     + + +   +G + A
Sbjct: 630  --REYKARAGQCPDMDPEDAWLVIRNSEVMCGVMDKSTVGDGKKDSVFYVILRDFGPDAA 687

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLL---ILKDKERERKNHLHGSEEIGKRVHLEALE 844
               ++ L++L    L   GF+ G+ D+     L DK               KR  ++   
Sbjct: 688  VVTMNRLAKLCARHLTNRGFSIGIGDVFPTEKLLDK---------------KRTLVKNAS 732

Query: 845  LEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPT 904
            +E    ID  K K+++EKA     +  +      + S+L     S  I  L        +
Sbjct: 733  IEVDVLIDKYK-KNKLEKATGCSMEQTLENSISGLLSKLRTQAGSHCIETL--------S 783

Query: 905  GKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGG 964
              N   +M   G+KGS +N  Q+ + +GQQ + GKRV      +TLP FH     P + G
Sbjct: 784  KNNAPLVMAKCGSKGSNINVAQMVALVGQQIIGGKRVADGFQDRTLPHFHKNAPQPPSKG 843

Query: 965  FIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD 1024
            F+ + F +GL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR 
Sbjct: 844  FVENSFYSGLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRT 903

Query: 1025 ADGSIVQFCYGEDGVD-------VHQTSFISKF------------------------DAL 1053
            + G IVQF +G D +D           +F   F                        D +
Sbjct: 904  SGGGIVQFQFGADKLDPVDMEASAKPVNFDRTFSHAENLTWDNNERALLPDEIVKYCDNM 963

Query: 1054 AARERGRGRGRNKFCD----------------KGSHTFV------MGRNQEMIYK--KCS 1089
             +RER R   ++   D                +G+  F+      +G   E + +  + +
Sbjct: 964  LSRERARYPRKSLLGDLTLDYDNEEERYTDEHEGARDFLRSLESYVGARAEKLRRLMEMT 1023

Query: 1090 GQLDASNAYIMELPDALKDNAEKFADKFLS-NEMAKQDFLKLVKHKFVLSLAQPGEPVGL 1148
            G    +++  +++ +    + + FADK    +E   + F++L   K+  +  +PG  VG 
Sbjct: 1024 GLTATADSMDVDVDEDEVRHKKAFADKVAKMSETTLKLFIRLCLEKYKKAHVEPGHAVGA 1083

Query: 1149 LASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            + +QS+GEP TQMTL TFH AG   M++T G+PR++EI+  ASK I TPVITCPL+
Sbjct: 1084 VGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN-ASKVISTPVITCPLV 1138


>gi|328790760|ref|XP_003251457.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like, partial
            [Apis mellifera]
          Length = 1374

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 312/1007 (30%), Positives = 475/1007 (47%), Gaps = 185/1007 (18%)

Query: 242  LLPSDVKDIIEKLWENEFEL------CSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFR 295
            L P +V+ I+EK+ EN+  L      C+   D+               L  + VPPI  R
Sbjct: 218  LNPLEVQSILEKIPENDIPLLMMNTECALPKDL--------------ILTRIPVPPICIR 263

Query: 296  LPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR--WMNLQQSVNV 350
             PS   D      E   T+ LS+++  N  +     ++   AKV +    W  LQ    +
Sbjct: 264  -PSVVSDIKAGTTEDHLTMKLSEIVFINDVIQK---HRQSGAKVQMYSEDWEFLQLHCAL 319

Query: 351  LFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNE 405
              + + +    +M       G+ Q L+ K+G FR  L GKRV+++ R+VISPDP L + +
Sbjct: 320  YINSEMSGIPLNMQPKKSGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLRIEQ 379

Query: 406  IGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRIS 465
            +G+P + A  LTYPE+V P N+  +R  + NG +IHPGA       +  +    K +R  
Sbjct: 380  VGVPIHVAKILTYPEKVNPSNIELMRKLVRNGPDIHPGANFIQQGKTQFK----KYLRYG 435

Query: 466  IGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLK 525
                   +R  I Q     D ++ G +V RHL+D DVVL NRQP+LHK SIMAH  ++L 
Sbjct: 436  -------NRQKIAQ-----DLQY-GDIVERHLRDDDVVLFNRQPSLHKLSIMAHKAKILD 482

Query: 526  GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSL 585
              +T R +   C+ YNADFDGDEMN+H PQ E +RAEA  ++   +  V P NG+ L + 
Sbjct: 483  -HRTFRFNECVCTPYNADFDGDEMNLHVPQTEEARAEALVLMGNKSNLVTPRNGELLIAA 541

Query: 586  IQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL 645
             QD I    LLT+KD FLN+ +  QL           G     P   + I+  E      
Sbjct: 542  TQDFITGGYLLTQKDMFLNKTQASQL----------AGCLLAGPDIAMSINLPE------ 585

Query: 646  LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKND 705
             PAI KP  LWTGKQ+ + +L                  P +    + N           
Sbjct: 586  -PAILKPTTLWTGKQIFSLILK-----------------PNNTCNIKANL--------KT 619

Query: 706  KGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVID 765
            KG+   TN                             +E  +++  ++I  ++L+ G +D
Sbjct: 620  KGRAYTTN-----------------------------EELCINDSYVIIRNSELLAGSMD 650

Query: 766  KAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL-----LIL 817
            K+     +   + + +   +G + A   +  L+R+ + FL   GF+ G+ D+     L+ 
Sbjct: 651  KSTLGSGSKQNIFYILLRDWGEDIATIAMWRLARMASFFLMNRGFSIGIGDVTPGQGLLK 710

Query: 818  KDKERERKNHLHGSEEIGKRVHLEALELEDGAEI-DPIKLKSEIEKAMRGGGDAAVAYFD 876
              +E     +   +E I         ++E+G  I  P   + E  +AM            
Sbjct: 711  AKQELLNAGYSKCTEYIQ--------DMEEGRLICQPGCTEEETLEAMI----------- 751

Query: 877  MKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
            +K  S +  H   + + E      L P+    I  M  SG+KGS +N  Q+ + +GQQ +
Sbjct: 752  LKELSVIRDHAGKACLKE------LHPSNSPLI--MALSGSKGSFINISQMIACVGQQAI 803

Query: 937  EGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVK 996
             G RVP     + LP F      P A GF+ + F +GL P E++FH M GREGLVDTAVK
Sbjct: 804  SGHRVPNGFEDRALPHFERHSKIPAAKGFVENSFYSGLTPTEFFFHTMGGREGLVDTAVK 863

Query: 997  TSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD---VHQTSFISKFDAL 1053
            T+ +GY+QR L+K+LE L + YD +VR++ G IVQ  YG D +D   +        +  +
Sbjct: 864  TAETGYMQRRLVKSLEDLCLHYDMTVRNSVGDIVQILYGGDALDPTYMEGKDCPVDYKRI 923

Query: 1054 AARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKF 1113
                R +   +N+    G H+ +   N+ +  ++       S  +  EL   LK  A K 
Sbjct: 924  LDHVRAKSPCKNEESLDG-HSVIKATNELLNSEEYEC---LSEEFKQELSTFLKSVARKI 979

Query: 1114 A----------------DKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEP 1157
            A                ++   +++   +F+   K K++ +  +PG  VG LA+QS+GEP
Sbjct: 980  ARLRHNAALNVPVILQLERLTVSQLV--EFIHTCKEKYMRAKIEPGTAVGALAAQSIGEP 1037

Query: 1158 STQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
             TQMTL TFH AG   MN+T G+PR++EI+  AS  I TP+IT  L+
Sbjct: 1038 GTQMTLKTFHFAGVASMNITQGVPRIKEIIN-ASPKISTPIITAALI 1083



 Score = 47.0 bits (110), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEK 56
           C +CG+    C GHFG+IDL +PV++   F  +  +L+ IC  C H   S  E++K
Sbjct: 69  CASCGKTLNECIGHFGYIDLELPVFHVGYFRSIIGILQTICKNCSHVMLS--EIDK 122


>gi|164657764|ref|XP_001730008.1| hypothetical protein MGL_2994 [Malassezia globosa CBS 7966]
 gi|159103902|gb|EDP42794.1| hypothetical protein MGL_2994 [Malassezia globosa CBS 7966]
          Length = 1376

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 317/1029 (30%), Positives = 487/1029 (47%), Gaps = 178/1029 (17%)

Query: 232  KKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPP 291
            K Q+DL      P  V D+  ++ + + EL +      +  FG+      +    + VPP
Sbjct: 189  KAQEDLN-----PLRVLDLFRRISDEDCELLAL-----KPQFGRPEE---YIWQYICVPP 235

Query: 292  IKFRLPSKGGDSVM-EHPQTVLLSKVLQANIYLANAYV--NQPDNAKVIVARWMNLQQSV 348
            +  R PS   D    E   TV L++++  N  + +     ++      +V +W  LQ SV
Sbjct: 236  VCIR-PSVAQDGATNEDDLTVKLTEIVFTNNIIKSGLTKGSKGTTTAQLVEQWDFLQLSV 294

Query: 349  NVLFDGKNAAGQRDMAS-----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
              L+      G   M+      G CQ L+ K+G FR  L GKRV+++ R+VISPDP LA+
Sbjct: 295  -ALYINSEMPGVPPMSGHKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLAI 353

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMR 463
            +EI +P   A  LTYPERV   N+  +R ++ NG + HPGA ++++              
Sbjct: 354  DEIAVPERVAKILTYPERVFAHNIEAMRQAVRNGTDTHPGANYHVN-------------- 399

Query: 464  ISIGRKLDTSRGAIVQPGKDSD---NEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHV 520
               GR  D  +  +  PG   D   N   G +V RH++DGD+VL NRQP+LHK SIM H 
Sbjct: 400  ---GR--DGFKRFLKFPGMRDDIAANLRVGDIVERHIRDGDIVLFNRQPSLHKLSIMCHR 454

Query: 521  VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGD 580
             ++ +  +T R++   CS YNADFDGDEMN+H PQ E +R EA  ++   +  V P NG+
Sbjct: 455  AKI-RPWRTFRLNECVCSPYNADFDGDEMNMHVPQTEEARTEALTLMGVKHNLVTPRNGE 513

Query: 581  PLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQ 640
            P+ +  QD I +A LL+++  F  R +F Q+    G +S  +                  
Sbjct: 514  PIVAATQDFITAAFLLSRRGRFFTRAQFVQICSYFGDASLHID----------------- 556

Query: 641  EVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSD 700
              LP  PAI KP  LWTGKQ+ + ++      RP                     +KQS 
Sbjct: 557  --LP-PPAILKPVRLWTGKQLFSCMI------RP---------------------NKQSP 586

Query: 701  RKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLV 760
               N +   ++     K + G    V E  P                ++  L+I  ++++
Sbjct: 587  VLVNLE---ARCRTFEKPRDG---HVNEMSP----------------NDGYLVIQNSEVL 624

Query: 761  RGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLIL 817
             GV+DKA   D     +   +   YG + A   ++ L++    +L   GF+ G+ D +  
Sbjct: 625  CGVMDKATVGDGKKQSVFGVILRDYGPDAAVASMNRLAKTCARWLSNQGFSLGIGD-VTP 683

Query: 818  KDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDM 877
                RE K+    + EI  R   + +EL    +++ +             G       + 
Sbjct: 684  GQHLRETKDR---NVEIAYRQCRDLIELAKRGKLENLP------------GCDQEQTLES 728

Query: 878  KMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELE 937
            K++  L     SSV +++    + + +  N   LM+  G+KGSK+N  Q+ + +GQQ + 
Sbjct: 729  KISGVL-----SSVRSDVGEICMTELSRHNAALLMSVCGSKGSKINVAQMVACVGQQIIS 783

Query: 938  GKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKT 997
            G RVP     ++LP F      P + GF+ + F +GL P E+ FH ++GREGLVDTAVKT
Sbjct: 784  GSRVPNGFQDRSLPHFPKKSKDPPSKGFVRNSFFSGLEPTEFLFHAISGREGLVDTAVKT 843

Query: 998  SRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD----------VHQTSFI 1047
            + +GY+QR L+K LE L   YD+SVR+++G +VQF YG+DG+D          V      
Sbjct: 844  AETGYMQRRLMKALEDLSTHYDFSVRNSEGGVVQFLYGDDGLDPAELEGNALPVEYNRTF 903

Query: 1048 SKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKK--------CSGQLDASNAYI 1099
                A  A    R     +  D  +H     R + +   K        C  Q+    A  
Sbjct: 904  RHASAKTADVPSRYLLPYEVMDLVNHLLSQDRFERVCTSKYIDQVREFCYEQVAKRMAET 963

Query: 1100 ME---LPDALKDNAEKFADKFLS-----------------NEMAKQDFLKLVKHKFVLSL 1139
             E   +  AL+ + +   D  LS                 +E    +F+ L   K++ + 
Sbjct: 964  REAYGMYPALERDGDWDVDTDLSLGADDAQRAVVENKVRVSEATILEFINLCWDKYMRAK 1023

Query: 1140 AQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVI 1199
             +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR++EI+  A+K I TP+I
Sbjct: 1024 IEPGSAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-AAKVINTPII 1082

Query: 1200 TCPLLVGKT 1208
               L+  K+
Sbjct: 1083 AATLVSEKS 1091



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query: 1  CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
          C+TCGQR   C GH+G+I LV+PV++   F  + ++L+ IC  C
Sbjct: 46 CETCGQRMADCVGHYGYIKLVLPVFHVGFFKHVVSILQMICKSC 89


>gi|403418854|emb|CCM05554.1| predicted protein [Fibroporia radiculosa]
          Length = 1738

 Score =  395 bits (1014), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 262/754 (34%), Positives = 390/754 (51%), Gaps = 129/754 (17%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPV--------YNPLLFNLLYTLLKRICFFCHHFKASRR 52
           C TC    F CPGHFGHI+L  PV        Y   +F     +L+ +   C +      
Sbjct: 63  CATCRLTYFTCPGHFGHIELPAPVQSGQKSSEYITNVFESAPFMLRVLLQMCRY------ 116

Query: 53  EVEKCVRKLELIIKGDIIAAKSLD----------------LDLPSESSNPEDSDVSNKSS 96
                V K+ L+  G +IAAK+LD                 + P+ES +  +  ++   +
Sbjct: 117 -----VAKIRLLEHGFLIAAKALDDVHVNTTKSRRKDEDEEEEPTESDHAFEQRINAYVA 171

Query: 97  CSMVTPRGN-YDNVRNLKPQEWTSLQFAEAKLALLQFLK---IETTKCGNCKAKNPRISK 152
             +    G+  D+ ++       SL F   +  + +FLK   ++  K  NC A +    K
Sbjct: 172 VHLAAASGSKRDSYKD-------SLVFQARREVIDEFLKTTMLKKCKNANCGAHSYSFRK 224

Query: 153 PTFGWI-------------HMNGMPHADIRANLIRGCNLGE----TFSGGEEEKDLGASS 195
             +  I                G+   ++ A+  +G +  +        GEE +D   +S
Sbjct: 225 EGYTKIIEYDLSTKQKQQHSFVGLKRPNVLADQQKGKSSVQKEWNMLDDGEESEDNSETS 284

Query: 196 DVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLW 255
           +    +  S        +D A +  +  SG V +   + + +    + P + +  + +L+
Sbjct: 285 E--GEDVFSDADDAEAKKDNAPQLPKSASGKVKTARGRNERV----MPPEECRAHLRRLF 338

Query: 256 ENEFELCSFISDMQQQGFGKKAGHS-------IFFLGVVLVPPIKFRLPSKGGDSVMEHP 308
            NE  +CS +   +   F   + H+       IFFL V+ V P +FR P+K G+ + EHP
Sbjct: 339 ANESVMCSLLYG-RHGPFSPLSKHNLSFASVDIFFLDVLPVSPTRFRPPAKMGEMLFEHP 397

Query: 309 QTVLLSKVLQANIYLAN------------AYVNQPDNAKVI---VARWMNLQQSVNVLFD 353
           Q  LL++V+  +  L +            + V++    +++   +   + LQ  VN   D
Sbjct: 398 QNELLARVITTSYRLRDLNETLRTASLKESTVDEASRRRILQSLLDGLIQLQVDVNSFID 457

Query: 354 G-KNAAGQRD---MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIP 409
             KN A  R      +G+ Q LEKKEGLFR+ +MGKRVNYA RSVISPD  +  NEIGIP
Sbjct: 458 SSKNPAPIRQGRLPPAGVKQGLEKKEGLFRKNMMGKRVNYAARSVISPDVNIEPNEIGIP 517

Query: 410 PYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGAT---------HYLDKLSTMRLPPNK 460
           P FA +LT+PE VTP N  +LR  +I G   +PGA+          +LDKLS        
Sbjct: 518 PVFARKLTFPEPVTPANFHELRQYVITGQSGYPGASMVEYEDGHLQFLDKLSV------- 570

Query: 461 KMRISIGRKL----DTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
           + R +I  +L    D S G+I + G  +      K VYRHL+DGD++++NRQPTLHKPS+
Sbjct: 571 EQRTAIANQLLTPQDGSHGSINRSGLYTRTPAVNKKVYRHLRDGDILILNRQPTLHKPSM 630

Query: 517 MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
           MAH  RVL+GEKT+RMHYANC++YNADFDGDEMN+HFPQ++V+RAEA  I N +NQY+ P
Sbjct: 631 MAHKARVLQGEKTIRMHYANCNSYNADFDGDEMNIHFPQNQVARAEAMYIANTDNQYLVP 690

Query: 577 SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
           ++G PLR LIQDH+V+   +T +D+F  R+E+ QLLY +       G  +G+        
Sbjct: 691 TSGKPLRGLIQDHVVAGVWMTAQDSFFTREEYFQLLYGALRPEDEAGHHSGR-------- 742

Query: 637 RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
                +L L P IWKP+PLWTGKQ+I+ V+ +IT
Sbjct: 743 -----LLTLPPTIWKPKPLWTGKQIISTVMKNIT 771



 Score =  353 bits (905), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 217/493 (44%), Positives = 283/493 (57%), Gaps = 40/493 (8%)

Query: 749  EEKLLIYKNDLVRGVIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHG 806
            E+K++    +L+ GV+DK+ F   D+GLVH+V ELYG + A +LL  LSRLFT FLQ   
Sbjct: 797  EDKVIFMDGELLSGVLDKSAFGATDFGLVHSVYELYGPDVADSLLGILSRLFTKFLQHRA 856

Query: 807  FTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID--PIKLKSEIEKAM 864
            FTC +DDL +  +   +R   L    ++G     +          D  P  L+S +E  +
Sbjct: 857  FTCRMDDLALTPEGNAKRAELLRNGAQLGTVGATDNFPSLASVSEDEKPAMLRSLLEDVL 916

Query: 865  RGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNF 924
            R   D  +A  DM +  +L K T S + +  +  GLL+    N +  MT SGAKGS VN 
Sbjct: 917  RD--DNKMAGLDMTVKGKLAKLTKS-IADACMPHGLLRQFPHNHMQTMTLSGAKGSAVNA 973

Query: 925  QQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCM 984
            QQIS  LGQQELEG+RVP MVSGKTLPSF P++    AGG++  RFLTG++PQE++FHCM
Sbjct: 974  QQISCALGQQELEGRRVPVMVSGKTLPSFKPFETKAIAGGYVASRFLTGVKPQEFFFHCM 1033

Query: 985  AGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT 1044
            AGREGL+DTAVKTSRSGYLQRCLIK+LE +++ YD +VR +D SI QF YG D +DV + 
Sbjct: 1034 AGREGLIDTAVKTSRSGYLQRCLIKHLEGVRVHYDNTVRGSDSSIYQFHYGGDALDVTRQ 1093

Query: 1045 SFISKFDALAARERGR-GRGRNK-FCDKGSHTFVMGRNQEMIYKKCSGQLDASNAY--IM 1100
              + +F+ +A  +     R R K      S   V    + + YK    + D       I 
Sbjct: 1094 KHLLQFEFIARNDVSLVNRYRPKELSSVISEEAVDYMKKVLRYKDRPSKRDTYKPALSIY 1153

Query: 1101 ELPDALKDNAEKFADKFLSNEMAKQD---------------------------FLKLVKH 1133
                 L   +E+FA+K    E  K++                           F  LV  
Sbjct: 1154 NPSRYLGSTSERFAEKV--EEYVKRNPHGLLRKKHQEEGMQIRRRKPLLPMKHFKLLVNV 1211

Query: 1134 KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKD 1193
            K++ SL  PGE VGLLASQ VGEPSTQMTLNTFH AG G  NVTLGIPRL+EI+  AS  
Sbjct: 1212 KYMRSLVDPGEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASTK 1271

Query: 1194 IKTPVITCPLLVG 1206
             KTP +T  +  G
Sbjct: 1272 PKTPSMTMQVRQG 1284


>gi|308491392|ref|XP_003107887.1| hypothetical protein CRE_12654 [Caenorhabditis remanei]
 gi|308249834|gb|EFO93786.1| hypothetical protein CRE_12654 [Caenorhabditis remanei]
          Length = 1406

 Score =  395 bits (1014), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 310/971 (31%), Positives = 464/971 (47%), Gaps = 176/971 (18%)

Query: 289  VPPIKFR--LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNA--KVIVARWMNL 344
            VPP+  R  + S+      E   T+ L +++  N  L     ++ D A  K +   W +L
Sbjct: 258  VPPVCIRPSVVSEVKSGTTEDDVTMKLMEIMLTNDVLKK---HKRDGAPSKTLFETWEHL 314

Query: 345  QQSVNVLFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDP 399
            Q    +  + + +    DM          Q L+ K+G FR  L GKRV+++ R+VISPDP
Sbjct: 315  QIQCALYINSEMSGLPPDMQPKKAMRSFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDP 374

Query: 400  YLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPN 459
             L ++++G+P + A+ LT+PE V   N+ K+R  +ING++IHPGA + +DK +      N
Sbjct: 375  NLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDIHPGANYLVDKKTG-----N 429

Query: 460  KKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAH 519
            KK+ +  G++ + ++   +           G  V RHL D DVVL NRQP+LHK SIM+H
Sbjct: 430  KKL-LKYGKRDELAKLLRL-----------GDTVERHLDDNDVVLFNRQPSLHKISIMSH 477

Query: 520  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNG 579
              +V+ G +T R +   C+ YNADFDGDEMN+H PQ   ++AEA  ++N  N  + P +G
Sbjct: 478  RAKVMPG-RTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSG 536

Query: 580  DPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSE 639
            +PL + IQD I    LLT KDTFL R E  +        ++ L   + K   ++ I    
Sbjct: 537  EPLVAAIQDFITGGYLLTHKDTFLPRAEVYRF-------AAALIDASAKKQTKIRIPP-- 587

Query: 640  QEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQS 699
                   PAI KP  LWTGKQ+I  ++      RP                         
Sbjct: 588  -------PAIRKPVELWTGKQLIELII------RP------------------------- 609

Query: 700  DRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKEL-SEEKLLIYKND 758
                 DKG     N   K+KS                     S   EL S++  +I +N 
Sbjct: 610  -----DKGSQISLNLTAKNKS--------------------YSGNLELCSKDSYVIIRNS 644

Query: 759  -LVRGVIDKAQFADYGLVHTVQEL---YGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             L+ GV+DK+       V+    L   YG + A   +  L+R+  VFL   GF+ G+ D+
Sbjct: 645  VLLAGVLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDV 704

Query: 815  LILKDKER--ERKNHL--HGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
               +  ER  + K  L   G E+  + +     ELE+G      KLK++         +A
Sbjct: 705  ---RPSERLLQEKGQLVDTGYEQCAQYIR----ELEEG------KLKAQPGCTEEETLEA 751

Query: 871  AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
             +    ++  S +  H     +  L        +  N    M   G+KGS +N  Q+ + 
Sbjct: 752  II----LRELSTIRDHAGQVCLRNL--------SKYNAPLTMAVCGSKGSFINISQMIAC 799

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            +GQQ + G R P     ++LP F      P A GF+ + F +GL P E++FH M GREGL
Sbjct: 800  VGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGL 859

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE-----------DGV 1039
            VDTAVKT+ +GY+QR L+K LE L  SYD +VR + G +++F +GE           DG 
Sbjct: 860  VDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGS 919

Query: 1040 DVHQTSFISKFDALAARERG-----------RGRGRNKFCDKGSHTFVMGRN--QEMIYK 1086
             V  T  +     +  ++             +   + +F  K  H     ++  Q  I K
Sbjct: 920  VVDFTHVLEHAKNIQTKKETPIPADKLEDVLKNEVQKQFKGKYPHFAEQLKDFLQTEIRK 979

Query: 1087 K---------CSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQ----DFLKLVKH 1133
                      CS Q + +   I E     K+ AE +    L+N    +     F++L  +
Sbjct: 980  SKKWQNGKTHCS-QHETAEENIREKCAKCKNMAE-YKSLLLTNSCLTKAQLHSFIQLCYY 1037

Query: 1134 KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKD 1193
            K   ++ +PG  VG +A+ S+GEPSTQMTL TFH AG   MN+T G+PR++EI+  A K 
Sbjct: 1038 KVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIIN-AVKT 1096

Query: 1194 IKTPVITCPLL 1204
            I TP+IT  LL
Sbjct: 1097 ISTPIITAALL 1107



 Score = 43.5 bits (101), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 24/41 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRIC 41
           C TCG     C GHFG+ DL VPV++   F L   LL+ IC
Sbjct: 70  CATCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCIC 110


>gi|358393275|gb|EHK42676.1| hypothetical protein TRIATDRAFT_86460 [Trichoderma atroviride IMI
            206040]
          Length = 1463

 Score =  395 bits (1014), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 305/1019 (29%), Positives = 481/1019 (47%), Gaps = 182/1019 (17%)

Query: 254  LWE-NEFELCSFISDMQQQGFGKKAGH-SIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTV 311
            LW  N F++    +D +  G     G   +F    V  PP+  R       +  E   T 
Sbjct: 234  LWVLNHFKMIG-PTDCELLGLDPTEGRPEMFIWQFVPAPPVCIRPSVAQEGASTEDDLTA 292

Query: 312  LLSKVLQANIYLANAYVNQPDNAKVIVARW--MNLQQSVNVLFD--GKNAAGQRDMASGI 367
             L++++  +  +  A +N+    + I+ +W  M LQ ++ V  D  G N  G      G 
Sbjct: 293  KLAEIVYISGLIRTA-LNKGKPMQTIMEQWEYMQLQIAMYVNSDVPGLNQPGFGKSIRGF 351

Query: 368  CQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNV 427
            CQ L+ K+G FR  L GKRV+++ R+VISPDP LA+N++ +P   A  LT+PERV   N+
Sbjct: 352  CQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLAINQVAVPQLVAKNLTFPERVQSHNL 411

Query: 428  VKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNE 487
             KLR  I+NG ++HPGA H +          N K  +  G K   +R   +         
Sbjct: 412  EKLRQCILNGPKVHPGANHVIKDNG------NWKQDLQFGDKALVARDLRI--------- 456

Query: 488  FEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGD 547
              G +V RHL+DGD+VL NRQP+LHK SIM+H  ++ +  +T R++   C  YNADFDGD
Sbjct: 457  --GDVVERHLEDGDIVLFNRQPSLHKLSIMSHFAKI-RPWRTFRLNECVCGPYNADFDGD 513

Query: 548  EMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDE 607
            EMN+H PQ E +RAEA  ++   +    P NG+P+ +  QD I ++ LL+ KD F NR  
Sbjct: 514  EMNLHVPQSEEARAEAMTLMGVKHNLATPKNGEPIIAATQDFITASYLLSSKDRFYNRKA 573

Query: 608  FCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLN 667
            F    Y       G+ +    P                 P+I KPE LWTGKQ+   ++ 
Sbjct: 574  FT---YICTHMMDGVVNIDLPP-----------------PSIIKPEALWTGKQIFNVLM- 612

Query: 668  HITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVV 727
                 RP                     +K+S    N   +  + +              
Sbjct: 613  -----RP---------------------NKESPVLVNLDARCREYS-------------- 632

Query: 728  EGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGS 784
              +PG+  + + N        +  L+I  ++++ G +DK+         + + +   +G 
Sbjct: 633  -ARPGQCPDMDPN--------DAWLVIRNSEVMCGRMDKSIIGSGKKNSVFYIILRDFGP 683

Query: 785  NTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALE 844
            + A   ++ L++L    L   GF+ GV D+  + +  R R            R+  +A +
Sbjct: 684  DHAVAAMNRLTKLCARALGNQGFSLGVGDVFPITELTRSR-----------DRLVQDAYD 732

Query: 845  LEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPT 904
              D A I+  K   ++EKA            DM+ T +++     S + +   +  +   
Sbjct: 733  KSD-ALIETFK-AGKLEKA---------PGCDMEQTLEISISGILSKVRQQAGQQCVDTL 781

Query: 905  GKNWISL-MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAG 963
             +N   L M  SG+KG  +N  Q+ + +GQQ + G+RVP     ++LP FH     P + 
Sbjct: 782  SRNNAPLIMANSGSKGLHINVAQMVACVGQQIIGGQRVPDGFQDRSLPHFHKNARQPASK 841

Query: 964  GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
            GF+ + F +GL P E++FH ++GREGL+DTAVKT+ +GY+ R L+K+LE L   YD +VR
Sbjct: 842  GFVRNSFYSGLFPTEFFFHAISGREGLIDTAVKTAETGYMSRRLMKSLEDLSTQYDNTVR 901

Query: 1024 DADGSIVQFCYGEDG---VDVHQTSFISKFD----------------------------A 1052
             + G IVQF +G D    VD+  ++    FD                            +
Sbjct: 902  TSAGGIVQFQFGADKLDPVDMEGSAVPVAFDRTWTHSESTTWDNNERSLLPREVLAVCSS 961

Query: 1053 LAARERGRGRGRNKFCDKGSHTFVMGRNQ------------EMIYKKCSG---QLDASNA 1097
            +  +E+ R + R++  D     +    ++            E IY   S    ++  + A
Sbjct: 962  MLEKEKQRYQ-RHRLVDNALLNYSDPTDENIDEHESARGFIETIYSYVSDRAQKISKARA 1020

Query: 1098 YIMELPDALKDNAEKFADKFLSNEMAK------------QDFLKLVKHKFVLSLAQPGEP 1145
             +   PD  +++    A   L  ++A+            Q F+K    ++  +  +PG  
Sbjct: 1021 LVGLDPDPTQEDVIADASADLKVQLARVERVTKVSLTTLQRFVKECLERYHKAHVEPGHA 1080

Query: 1146 VGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            VG + +QS+GEP TQMTL TFH AG   M++T G+PR++EI+  ASK+I TPVITCPLL
Sbjct: 1081 VGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN-ASKNISTPVITCPLL 1138



 Score = 42.0 bits (97), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC +    C GHFGH+ L +P ++      + T+L+ +C  C
Sbjct: 76  CGTCQEPLKFCIGHFGHVRLALPAFHIGYLRFIQTILQNVCKTC 119


>gi|340519695|gb|EGR49933.1| predicted protein [Trichoderma reesei QM6a]
          Length = 1465

 Score =  394 bits (1013), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 305/1018 (29%), Positives = 480/1018 (47%), Gaps = 180/1018 (17%)

Query: 254  LWE-NEFELCSFISDMQQQGFGKKAGH-SIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTV 311
            LW  N F++ +  +D +  G     G   +F    V  PP+  R       +  E   T 
Sbjct: 234  LWVLNHFKMIT-ATDCELLGLDPTEGRPEMFIWQFVPAPPVCIRPSVAQEGASTEDDLTA 292

Query: 312  LLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ----QSVNVLFDGKNAAGQRDMASGI 367
             L++++  +  +  A +N+    + I+ +W  LQ      VN    G N  G      G 
Sbjct: 293  KLAEIVYISGLIRTA-LNKGKPMQTIMEQWEYLQLQIAMYVNSDVPGLNQPGFGKSIRGF 351

Query: 368  CQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNV 427
            CQ L+ K+G FR  L GKRV+++ R+VISPDP L +N++ +P   A  LT+PERV   N+
Sbjct: 352  CQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLGINQVAVPQLVAKNLTFPERVQSHNM 411

Query: 428  VKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNE 487
             KLR  I+NG ++ PGA H +          N K  +  G +   +R   +         
Sbjct: 412  EKLRQCILNGPKVWPGANHVIKDNG------NWKQDLQFGDRALVARDLRI--------- 456

Query: 488  FEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGD 547
              G +V RHL+DGDVVL NRQP+LHK SIM+H+ ++ +  +T R++   C  YNADFDGD
Sbjct: 457  --GDVVERHLEDGDVVLFNRQPSLHKLSIMSHLAKI-RPWRTFRLNECVCGPYNADFDGD 513

Query: 548  EMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDE 607
            EMN+H PQ E +RAEA  ++   N    P NG+P+ +  QD I ++ LL+ KD F NR  
Sbjct: 514  EMNLHVPQSEEARAEAITLMGVKNNLATPKNGEPIIAATQDFITASYLLSSKDRFYNRKA 573

Query: 608  FCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLN 667
            F    Y       G+      P                 P+I KPE LWTGKQ+   ++ 
Sbjct: 574  FT---YICTHMVDGVTHIDLPP-----------------PSIIKPEALWTGKQIFNVLM- 612

Query: 668  HITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVV 727
                 RP                     +KQS    N   +  + +              
Sbjct: 613  -----RP---------------------NKQSPVLVNLDARCREYS-------------- 632

Query: 728  EGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGS 784
              +PG+  + + N        +  L+I  ++++ G +DK+         + + +   +G 
Sbjct: 633  -ARPGQCPDMDPN--------DAWLVIRNSEVMCGRMDKSIIGSGKKNSVFYIILRDFGP 683

Query: 785  NTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALE 844
            + A   ++ L++L    L   GF+ GV D+    +  + R            R+  +A +
Sbjct: 684  DHAVYAMNRLTKLCARQLGNQGFSLGVGDVFPSTELTKSR-----------DRLVQDAYD 732

Query: 845  LEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPT 904
              D A I+  K + ++EKA         A  DM+ T +++     S + +   +  +   
Sbjct: 733  KSD-ALIETFK-QGKLEKA---------AGCDMEQTLEISISGILSKVRQQAGQQCVDAL 781

Query: 905  GKNWISL-MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAG 963
             +N   L M  SG+KG  +N  Q+ + +GQQ + G+RVP     ++LP FH     P + 
Sbjct: 782  SRNNAPLIMANSGSKGLHINVAQMVACVGQQIIGGQRVPDGFQDRSLPHFHKNARQPASK 841

Query: 964  GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
            GF+ + F +GL P E++FH ++GREGL+DTAVKT+ +GY+ R L+K+LE L   YD +VR
Sbjct: 842  GFVRNSFYSGLFPTEFFFHAISGREGLIDTAVKTAETGYMSRRLMKSLEDLSTQYDNTVR 901

Query: 1024 DADGSIVQFCYGEDG---VDVHQTSFISKFD----------------------------A 1052
             + G+IVQF +G D    VD+  ++   +FD                            +
Sbjct: 902  TSSGTIVQFQFGADKLDPVDMEGSAVPVQFDRTWTHAESTTWDNNERSLLPHEVLEVCTS 961

Query: 1053 LAARERGRGRGR----NKFCDKGS-------------------HTFVMGRNQEMIYKKCS 1089
            +  +E+ R + R    N   D                      +++V  R Q+M   +  
Sbjct: 962  MLDKEKLRYKRRRLVDNALLDYSDPTDEALDEHESARGFIDTIYSYVAERAQKMSKAREL 1021

Query: 1090 GQLDASNAYIMELPDALKDNAEKFADKFLSNEMA---KQDFLKLVKHKFVLSLAQPGEPV 1146
              LD   ++  +L +A  D   + A     ++++    Q F+K    ++  +  +PG  V
Sbjct: 1022 VGLDPDPSHDEDLSNASPDLKARLARVERVSKISLTTLQRFVKECLERYHKAHVEPGHAV 1081

Query: 1147 GLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G + +QS+GEP TQMTL TFH AG   M++T G+PR++EI+  ASK+I TPVITCPLL
Sbjct: 1082 GAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN-ASKNISTPVITCPLL 1138



 Score = 42.4 bits (98), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC +    C GHFGH+ L +P ++      + T+L+ +C  C
Sbjct: 76  CGTCQEPLKFCIGHFGHVRLALPAFHIGYLRFIQTILQNVCKTC 119


>gi|310799174|gb|EFQ34067.1| RNA polymerase Rpb1 [Glomerella graminicola M1.001]
          Length = 1342

 Score =  394 bits (1013), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 304/1013 (30%), Positives = 478/1013 (47%), Gaps = 177/1013 (17%)

Query: 257  NEFELCSFISDMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVM-EHPQTVLLS 314
            N F++ S  SD +  G     G    F+   L  PP+  R PS   D+   E   T  L+
Sbjct: 124  NLFKMIS-PSDCELLGLDPAEGRPEMFIWQFLPAPPVCIR-PSVAQDNASNEDDITTKLA 181

Query: 315  KVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD----GKNAAGQRDMASGICQL 370
             ++  +  + +A + +    + I+ +W  LQ  V +  +    G    G      G CQ 
Sbjct: 182  DIVWVSGMIRSA-LQKGSPVQTIMEQWEYLQLQVAMYVNSDVPGLQQPGFGKAVRGFCQR 240

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ K+G FR  L GKRV+++ R+VISPDP L ++++ +P   A  LTYPERV+ +N+ KL
Sbjct: 241  LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPQLVAKNLTYPERVSDYNIAKL 300

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
            ++ + NG  I PGA   + K                G K+    G   Q  +D      G
Sbjct: 301  KECVRNGPNIWPGAQQVIKKDDG-------------GYKISLKFGNRNQVAQDLRI---G 344

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
             +V RHL+D D+VL NRQP+LHK SIM+H+V+V +  +T R++   C  YNADFDGDEMN
Sbjct: 345  DVVERHLEDNDIVLFNRQPSLHKLSIMSHLVKV-RPWRTFRLNECVCGPYNADFDGDEMN 403

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E +RAEA N++   +    P NG+P+ +  QD I +A LL+ KD F +R  F  
Sbjct: 404  LHVPQTEEARAEAINLMGVKHNLATPKNGEPVIAATQDFITAAYLLSSKDNFFDRKTFTY 463

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            +                     ++  +   ++ P  PA+ KP+ LWTGKQV   ++    
Sbjct: 464  IC------------------MHMMDGKVHLDLPP--PAVLKPKALWTGKQVFNMMM---- 499

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
              RP                     +K+S  K N   K                      
Sbjct: 500  --RP---------------------NKESPVKINLDAKC--------------------- 515

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTA 787
               E +A   +  + +  +  L+I  ++++ GV+DK+   D     + + +   +G + A
Sbjct: 516  --REYKARAGQCPDMDPEDAWLVIRNSEVMCGVMDKSTVGDGKKDSVFYVILRDFGPDAA 573

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED 847
               ++ L++L    L   GF+ G+ D+    +K  E+K+ L           ++   LE 
Sbjct: 574  VATMNRLAKLCARHLTNRGFSIGIGDVFP-TEKLLEKKSTL-----------VKTASLEV 621

Query: 848  GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKN 907
               ID  K K+++EKA     +  +      + S++     +  I  L        +  N
Sbjct: 622  DVLIDKYK-KNKLEKATGCSMEQTLENSISGLLSKVRTQAGAHCIETL--------SKNN 672

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
               +M   G+KGS +N  Q+ + +GQQ + GKRV      +TLP FH     P + GF+ 
Sbjct: 673  APLVMAKCGSKGSNINVAQMVALVGQQIIGGKRVADGFQDRTLPHFHKNAPQPPSKGFVE 732

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
            + F +GL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR + G
Sbjct: 733  NSFYSGLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSGG 792

Query: 1028 SIVQFCYGEDGVD-------VHQTSFISKF------------------------DALAAR 1056
             IVQF +G D +D           +F   F                        D++ +R
Sbjct: 793  GIVQFQFGADKLDPVDMEASAKPVNFDRTFSHAENLTWNNEEPALLPDEIVRYCDSMLSR 852

Query: 1057 ERGRGRGRNKFCD-----------------------KGSHTFVMGRNQEM-IYKKCSGQL 1092
            ER R   ++   D                       +   ++V  R Q++    + +G  
Sbjct: 853  ERARYPRKSLLGDLTLDYDNEEERYTDEHEGARDFLRSLESYVGARAQKLRRLMELTGLT 912

Query: 1093 DASNAYIMELPDALKDNAEKFADKFLS-NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLAS 1151
              +++  +++      + + +A+K    +E   + F+KL   K+  +  +PG  VG + +
Sbjct: 913  ADADSMDVDVDQEEMRHKKAYAEKVAKVSETTLRLFIKLCLEKYKKAHVEPGHAVGAVGA 972

Query: 1152 QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            QS+GEP TQMTL TFH AG   M++T G+PR++EI+  ASK I TPVITCPL+
Sbjct: 973  QSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN-ASKVISTPVITCPLV 1024


>gi|268535924|ref|XP_002633097.1| C. briggsae CBR-RPC-1 protein [Caenorhabditis briggsae]
          Length = 1402

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 303/970 (31%), Positives = 458/970 (47%), Gaps = 173/970 (17%)

Query: 289  VPPIKFR--LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQ 346
            VPP+  R  + S+      E   T+ L +++  N  L   +      AK +   W +LQ 
Sbjct: 253  VPPVCIRPSVVSEVKSGTTEDDVTMKLMEIMLTNDVLKK-HKRDGAPAKTLFETWEHLQI 311

Query: 347  SVNVLFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYL 401
               +  + + +    DM          Q L+ K+G FR  L GKRV+++ R+VISPDP L
Sbjct: 312  QCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNL 371

Query: 402  AVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKK 461
             ++++G+P + A+ LT+PE V   N+ K+R  I+NG+++HPGA + +DK +        K
Sbjct: 372  RIDQVGVPVHVAMTLTFPEIVNASNIDKMRKLIVNGSDVHPGANYLVDKKT------GHK 425

Query: 462  MRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVV 521
              +  G + + ++           N   G  V RHL D DVVL NRQP+LHK SIM+H  
Sbjct: 426  KLLKYGNREELAK-----------NLRLGDTVERHLDDNDVVLFNRQPSLHKISIMSHRA 474

Query: 522  RVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDP 581
            +V+ G +T R +   C+ YNADFDGDEMN+H PQ   ++AEA  ++N  N  + P +G+P
Sbjct: 475  KVMPG-RTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEP 533

Query: 582  LRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQE 641
            L + IQD I    LLT KDTFL R E  +        ++ L   + K   ++ I      
Sbjct: 534  LVAAIQDFITGGYLLTHKDTFLPRAEVYRF-------AAALIDASAKKQSKIRIPP---- 582

Query: 642  VLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDR 701
                 PAI +P  LWTGKQ+I  ++      RP                           
Sbjct: 583  -----PAIRRPVELWTGKQLIELII------RP--------------------------- 604

Query: 702  KKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKEL-SEEKLLIYKND-L 759
               DKG     N   K+KS                     S   EL S++  +I +N  L
Sbjct: 605  ---DKGSQVSLNLTAKNKS--------------------YSGNLELCSKDSYVIIRNSVL 641

Query: 760  VRGVIDKAQFADYGLVHTVQEL---YGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLI 816
            + GV+DK+       V+    L   YG + A   +  L+R+  VFL   GF+ G+ D+  
Sbjct: 642  LAGVLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDV-- 699

Query: 817  LKDKER--ERKNHL--HGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
             +  ER  + K  L  +G E+  + +     ELE+G      KLK++         +A +
Sbjct: 700  -RPSERLLQEKGQLVDNGYEKCAQYIR----ELEEG------KLKAQPGCTEEETLEAII 748

Query: 873  AYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
                ++  S +  H     +  L        +  N    M   G+KGS +N  Q+ + +G
Sbjct: 749  ----LRELSTIRDHAGQVCLRNL--------SKYNAPLTMAVCGSKGSFINISQMIACVG 796

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ + G R P     ++LP F      P A GF+ + F +GL P E++FH M GREGLVD
Sbjct: 797  QQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVD 856

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE-----------DGVDV 1041
            TAVKT+ +GY+QR L+K LE L  SYD +VR + G +++F +GE           DG  V
Sbjct: 857  TAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPSMMEAKDGSVV 916

Query: 1042 HQTSFISKFDALAAR-----------ERGRGRGRNKFCDKGSH------------TFVMG 1078
              T  +     +  +           E  +   + +F +K  H                 
Sbjct: 917  DFTHVLEHAKNIQTKKEKPIPAEKLDEVLKTEVQKQFKEKYVHFADQMKDYLLQTEIKKS 976

Query: 1079 RNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQD----FLKLVKHK 1134
            +  + I   C+ + +++NA   E   A   N + +    L N    +     F++L  +K
Sbjct: 977  KKWQGIQTHCA-EHESANAKTRE-ECAKCTNLDTYRTSLLKNSCLTRSQLLSFIQLCYYK 1034

Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
               ++ +PG  VG +A+ S+GEPSTQMTL TFH AG   MN+T G+PR++EI+  A K I
Sbjct: 1035 IARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIIN-AVKTI 1093

Query: 1195 KTPVITCPLL 1204
             TP+IT  LL
Sbjct: 1094 STPIITASLL 1103



 Score = 44.7 bits (104), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TCG     C GHFG+ DL VPV++   F L   LL+ IC  C
Sbjct: 70  CATCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNC 113


>gi|169623425|ref|XP_001805120.1| hypothetical protein SNOG_14953 [Phaeosphaeria nodorum SN15]
 gi|160704980|gb|EAT77805.2| hypothetical protein SNOG_14953 [Phaeosphaeria nodorum SN15]
          Length = 1691

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 259/727 (35%), Positives = 375/727 (51%), Gaps = 96/727 (13%)

Query: 1   CKTCGQRQFL-CPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVR 59
           C TCG   F+ CPGH GHI+L VPVYN    + L  LL+  C +CH  K +R  V + V 
Sbjct: 62  CSTCGLTTFMGCPGHCGHIELPVPVYNLTFLDQLLRLLRGKCVYCHQLKLARVTVNEFVS 121

Query: 60  KLELIIKGDIIAAKSLDLDLPSESS----NPEDSDVSNKSSCSMVTPRGNY--------- 106
           +L LI  G +  A  L   + +         ++SD  +++   +V+ + NY         
Sbjct: 122 RLRLIRCGLVQEANELHEHVNASKGKTKRTAQESDSEDEND-DIVSQQNNYVKKCLKKAG 180

Query: 107 ---DNVRNLKPQEWTSLQFAEAKLALLQFLKIETT---KCGNCKAKNP--------RISK 152
               +VR++K +       ++A+  +L+    +     KC NC+  NP        +I +
Sbjct: 181 ITSRDVRSIKEKNDA---ISDARRQVLKEFYAQVAYGKKCKNCQGINPTYRKDRGVKIFR 237

Query: 153 PTFGWIHMNGMPHADIRAN-----LIR--GCNLGETFSGGEEEKDLGASSDVDAPETHSF 205
                     M  A+ R       L R       +     E   DL  +S+ D  E    
Sbjct: 238 KNLSGKDKMAMAQAEKRMTNPLDILARREAKARKQPVHADEGVADLDPASEED--EGIDL 295

Query: 206 NGTFPGT-QDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSF 264
           +    G+   T AR   K   AV      Q+ + +     ++V+  +  L+E E ++   
Sbjct: 296 DDVDDGSLVATEARTGNKSRTAVDPADGAQEYMTA-----AEVRAAMILLFEQEADMMRL 350

Query: 265 ISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQA---NI 321
           +               +FF   V+VPP ++RL  K GDS+ E P+  L   +L A     
Sbjct: 351 LYSPYASKSLVSVTADMFFTEAVVVPPNRYRLEDKTGDSIAESPKNSLYKGILNACDAMR 410

Query: 322 YLANAYVNQPDNAKV-------IVARWMNLQQSVNVLFDGKNAAGQRDMA----SGICQL 370
            ++N    Q + A         +  +W+NLQ +VN L D +    Q   A     GI Q+
Sbjct: 411 QISNEMKGQENEAGYRRRNFDDLQTQWVNLQGAVNALIDKEANPTQGRAAITNADGIKQV 470

Query: 371 LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
           LEKKEGLFR+ +MGKRVN+A RSVISPDP +  NEIG+PP FA++LTYPE VT  N   L
Sbjct: 471 LEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFAIKLTYPEPVTNHNFYDL 530

Query: 431 RDSIINGAEIHPGATHYLD---KLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNE 487
           +++++NG +  PGA    +   ++  +R   N + R+++  +L       + P     N 
Sbjct: 531 KEAVLNGPDKWPGAVAIENESGQVIALR-KKNYEERLALANQL-------LAPSNSYGNG 582

Query: 488 FEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGD 547
            + K V+RHL +GDVV++NRQPTLHKPS+MAH  RVL GEKT+RMHYANC+TYNADFDGD
Sbjct: 583 SKNKKVHRHLNNGDVVIMNRQPTLHKPSMMAHRARVLPGEKTIRMHYANCNTYNADFDGD 642

Query: 548 EMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDE 607
           EMN+HFPQ+E++RAEA  + + ++QY+  + G PLR LIQDHI     +T KDTF  R+E
Sbjct: 643 EMNMHFPQNELARAEAMTVADTDHQYLSATAGKPLRGLIQDHISMGVWITNKDTFFTREE 702

Query: 608 FCQLLYS-----SGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI 662
           + QLLYS      G ++SG                    +  + PAIWKP PLWTGKQ+ 
Sbjct: 703 YHQLLYSCLRPEDGHTTSG-------------------RLETVDPAIWKPVPLWTGKQIF 743

Query: 663 TAVLNHI 669
           T VL ++
Sbjct: 744 TTVLKNV 750



 Score =  283 bits (723), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 143/280 (51%), Positives = 192/280 (68%), Gaps = 6/280 (2%)

Query: 773  GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSE 832
            G ++ V E YG   AG +LS + RL T  L M  F+CGV+DL++ ++ +R R   L  ++
Sbjct: 769  GFINGVYEAYGETIAGRVLSIIGRLLTKLLHMRAFSCGVEDLILTEEGDRARIEELSKAQ 828

Query: 833  EIGKRVHLEALELEDGAEIDPI--KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSS 890
              G +V  E + L D ++IDP+  +L+  +E  +R   D      DM +T+  N   S++
Sbjct: 829  TSGFKVATEYVTL-DASKIDPMNPELRRRMEDVLRD--DEKQRGLDM-LTTTANSQISAA 884

Query: 891  VINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTL 950
            V    L   L+KP  KN +  MT SGAKGS VN  QIS +LGQQ LEG+RVP MVSGKTL
Sbjct: 885  VTTACLPGQLIKPFPKNQMQAMTGSGAKGSLVNANQISCNLGQQVLEGRRVPVMVSGKTL 944

Query: 951  PSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1010
            P F P++ + RAGG+I++RFLTG+RPQEYYFH MAGREGL+DTAVKTSRSGYLQRC+IK 
Sbjct: 945  PCFKPFETSVRAGGYIVNRFLTGIRPQEYYFHMMAGREGLIDTAVKTSRSGYLQRCIIKG 1004

Query: 1011 LECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKF 1050
            +E L + YD SVRD+DGS+VQF YGEDG+D+ +  +++ F
Sbjct: 1005 MEGLHVEYDTSVRDSDGSMVQFLYGEDGLDITKQKYLNDF 1044



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/77 (59%), Positives = 59/77 (76%)

Query: 1121 EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGI 1180
            E+ K+ F +++  K++ SL +PGE VG++A QS+GEPSTQMTLNTFHLAG    NVTLGI
Sbjct: 1137 EILKKSFEQMLDLKYLRSLVEPGEAVGVVAGQSIGEPSTQMTLNTFHLAGHAAKNVTLGI 1196

Query: 1181 PRLQEILTIASKDIKTP 1197
            PRL+EI+  AS  I TP
Sbjct: 1197 PRLREIVMTASAKISTP 1213


>gi|392569146|gb|EIW62320.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Trametes versicolor FP-101664 SS1]
          Length = 1403

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 303/979 (30%), Positives = 467/979 (47%), Gaps = 172/979 (17%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVM-EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
            +    + VPP+  R PS   D    E   TV L++++ +N  +    V     A+  + +
Sbjct: 246  YIWQYISVPPVAIR-PSVAQDGASNEDDLTVKLTEIVFSNALIKQGLVKGAPTAQ-FMEQ 303

Query: 341  WMNLQQSVNVLFDGK-----NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
            W  LQ SV +  + +     +  GQ+ +  G CQ L+ K+G FR  L GKRV+++ R+VI
Sbjct: 304  WEFLQLSVAMYINSELPGVPSQLGQKPI-RGFCQRLKGKQGRFRGNLSGKRVDFSGRTVI 362

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMR 455
            SPDP L ++E+ +P   A  LTYPERVT  N+ +L+ ++ NG ++HPGA +Y+   S   
Sbjct: 363  SPDPNLRIDEVAVPERVAKILTYPERVTGHNIDRLKKAVRNGCDVHPGA-NYVTAGSN-- 419

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
                 K  +  G +   + G  +           G +V RH+ DGD+ L NRQP+LHK S
Sbjct: 420  ---GFKKYLKFGNRTAIADGLRI-----------GDIVERHVIDGDIALFNRQPSLHKLS 465

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            IM H ++V +  ++ R++   C  YNADFDGDEMN+H PQ E +R EA  +++  +  V 
Sbjct: 466  IMCHRIKV-RPWRSFRLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVT 524

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 635
            P NG+P+ + IQD I ++ LL+++DTF +R +F Q+   S  + + L             
Sbjct: 525  PRNGEPVIAAIQDFITASFLLSRRDTFFDRRQFTQI--CSYFADADL------------- 569

Query: 636  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
               + ++ P  PAIWKP  LWTGKQV   ++      RP                     
Sbjct: 570  ---QIDIPP--PAIWKPVRLWTGKQVFNVLM------RP--------------------- 597

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
            ++QS    N + K +K                E KP          + +   ++  L+I 
Sbjct: 598  NRQSKVFVNVESKCNK----------------EDKPQAACYPRMRPAPDLSPNDGWLVIV 641

Query: 756  KNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
             ++++ GV+DKA         +   +   YG + A   ++ +++L   +L   GF+ G++
Sbjct: 642  NSEIMCGVMDKATVGSGKKKSVFGVIMRDYGPHEAAAAMNRVAKLCARYLANIGFSLGIN 701

Query: 813  DLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAM---R 865
            D++    +   K+   ++     E +  R     LE + G + +   L++EI K +   R
Sbjct: 702  DVIPGPVLSGKKDSMVEDAYAACERLIIRAKKGLLENKPGCDQEQ-TLEAEISKVLSDVR 760

Query: 866  GGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQ 925
            G     V    MK   +L++H +  +                    M T G+KGS +N  
Sbjct: 761  GN----VGEICMK---ELSRHNAPLI--------------------MATCGSKGSVINVS 793

Query: 926  QISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMA 985
            Q+ + +GQQ + G RVP     ++LP F      P + GF+ + F TGL P E+ FH ++
Sbjct: 794  QMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSRDPPSKGFVRNSFYTGLTPTEFLFHAIS 853

Query: 986  GREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQF----------CYG 1035
            GREGLVDTAVKT+ +GY+QR L+K LE L   YD SVR+A G +VQF          C  
Sbjct: 854  GREGLVDTAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAVGGVVQFRYGDDGLDPACLE 913

Query: 1036 EDGVDVHQTSFISKFDALAARE-RG--------------RGRGRNKFCDKGSHTFVMGRN 1080
             D   V          +LA+R  RG                R     C       +    
Sbjct: 914  GDAQPVDYERAWRHACSLASRAPRGLLPYEIIEFVDHELSTRKYTTECTAAYLATIRSFI 973

Query: 1081 QEMIYKKC---------------SGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQ 1125
             E I ++                  + DA     M   DA K   +   +K    E   +
Sbjct: 974  SENIAQRLGEVRKRHGMFEALEREDEWDADTDLTMGASDADKAAVD---NKIKVTEEQLR 1030

Query: 1126 DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1185
             FL +   K+V +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR++E
Sbjct: 1031 LFLDVCWTKYVKAKIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKE 1090

Query: 1186 ILTIASKDIKTPVITCPLL 1204
            I+  A+K I TP+I+C L+
Sbjct: 1091 IIN-AAKAISTPIISCKLV 1108


>gi|119490427|ref|XP_001263030.1| DNA-directed RNA polymerase III largest subunit, putative
            [Neosartorya fischeri NRRL 181]
 gi|119411190|gb|EAW21133.1| DNA-directed RNA polymerase III largest subunit, putative
            [Neosartorya fischeri NRRL 181]
          Length = 1453

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 310/992 (31%), Positives = 467/992 (47%), Gaps = 186/992 (18%)

Query: 275  KKAGHSIFFLGVVLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQANIYLANAYVN-QPD 332
            K+A   +F    +  PP+  R PS G D+   E   T  L  ++Q+NI L NA +   P 
Sbjct: 260  KEARPEMFLWQFIPAPPVCIR-PSVGQDAASTEDDLTAKLGDIVQSNINLKNALMKGAPV 318

Query: 333  NAKVIVARWMNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYA 390
               V    +M LQ +V +  D  G N A       G  Q L+ K+G FR  L GKRV+++
Sbjct: 319  QTIVECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 378

Query: 391  CRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDK 450
             R+VISPDP L V+E+ +P   A  +TYPE VT +N  KL+  + NG +  PGA + + K
Sbjct: 379  GRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPGANYIIKK 438

Query: 451  LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPT 510
             S                KL    G +      +D   EG ++ RH++DGD+VL NRQP+
Sbjct: 439  GSDF--------------KLFLKYGNL---NMIADQIQEGDVIERHIEDGDIVLFNRQPS 481

Query: 511  LHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNAN 570
            LHK SI++H  +V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA  ++   
Sbjct: 482  LHKLSILSHFAKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVK 540

Query: 571  NQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL-LYSSGVSSSGLGSFTGKP 629
            N    P NG+P+ S IQD I +A +L+ KD F +R  F Q+ LY  G  +     F   P
Sbjct: 541  NNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLGPET----RFDLPP 596

Query: 630  GQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFF 689
                             PA+ KP+ LWTGKQV   ++      RP               
Sbjct: 597  -----------------PAVLKPQMLWTGKQVFNILM------RP--------------- 618

Query: 690  KTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSE 749
                                SK + +  +     +E    K G  K+ + N        +
Sbjct: 619  --------------------SKDDPVLVNLDAACREFKPPKDGRPKDLDPN--------D 650

Query: 750  EKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHG 806
              L+I  ++++ GV+DKA         + + +   +G   A   ++ LS+L   +    G
Sbjct: 651  GWLVIRNSEVMCGVMDKATIGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSARWFTNMG 710

Query: 807  FTCGVDDL-----LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI-----KL 856
            F+ G+ D+     L+    E     +    E I K    +A  LE     D +     +L
Sbjct: 711  FSIGITDVYPSESLVRSKNELVEAAYAQCDEVIAK---YKAGTLEKYPGCDELQTMENQL 767

Query: 857  KSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSG 916
               + K  +  GD  +A        QL+K+ S  +                    M TSG
Sbjct: 768  SGILSKVRQQAGDECIA--------QLSKYNSPLI--------------------MATSG 799

Query: 917  AKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRP 976
            +KGS +N  Q+ + +GQQ + G+RV      +TLP F      P + GF+ + F +GL P
Sbjct: 800  SKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSFFSGLLP 859

Query: 977  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE 1036
             E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++  +IVQF YG+
Sbjct: 860  TEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSDAIVQFQYGD 919

Query: 1037 DGVD-----------------VHQTSFISKFD--------------ALAARERGRGRGRN 1065
            D +D                 +H  S     D               + ++ER +    +
Sbjct: 920  DKLDPVDMEGKAKPVHFDRTFIHAESITYDNDERSLLPHEIMEVCEEMLSKERAKLVRED 979

Query: 1066 KFCDKGSHTFVMGRNQEMI--YKKCSGQLDASNAYIMELPDAL------KDNAEKFADKF 1117
               +K S+   M R+   +  ++     L++   YI    D L       D +++ + K 
Sbjct: 980  LLGNKLSY---MDRSDHGVDQFESARDFLESIQQYISSKADKLISRGGDIDPSDERSQKG 1036

Query: 1118 LSN-----EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRG 1172
            L++     E   + F+     K+  +  +PG  VG + +QS+GEP TQMTL TFH AG  
Sbjct: 1037 LNHTGKLTEKTLRTFITSCLMKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVA 1096

Query: 1173 EMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
             M++T G+PR++EI+  ASK+I TPVI+C L+
Sbjct: 1097 GMSITQGVPRIKEIIN-ASKEISTPVISCDLV 1127



 Score = 49.3 bits (116), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C+TCG    +C GHFGH+ LV+P ++   F  + ++L+ IC  C      +A RR   + 
Sbjct: 78  CQTCGGSLQVCNGHFGHVRLVLPAFHVGYFKRVISILQEICKECSRILLPEAERRAFLRE 137

Query: 58  VRK 60
           +R+
Sbjct: 138 MRR 140


>gi|443729218|gb|ELU15202.1| hypothetical protein CAPTEDRAFT_219447 [Capitella teleta]
          Length = 1381

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 295/961 (30%), Positives = 458/961 (47%), Gaps = 163/961 (16%)

Query: 282  FFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIV 338
              L  ++VPP+  R PS   D      E   T+ ++++L  N  +     +     ++I+
Sbjct: 244  LILTRIIVPPLCIR-PSVISDLKAGTNEDDITMKMTEILFLNDVIVKHRASGA-KMQMIM 301

Query: 339  ARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYACRS 393
              W  LQ  V +LF+ + +     M       G  Q L+ K+G FR  L GKRV+++ R+
Sbjct: 302  EDWDYLQLQVALLFNSETSGIPLHMMPKKPMRGFTQRLKGKQGRFRGNLSGKRVDFSGRT 361

Query: 394  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLST 453
            VISPDP + ++++ +P + A  LTYPERV   N+  ++  + NG + HPGA   L + + 
Sbjct: 362  VISPDPNMRIDQVAVPVHVAKILTYPERVNYANLSLMKKLVTNGCDSHPGANFILQRGTN 421

Query: 454  MRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHK 513
            ++       R  I  +L                   G +V RHL D D+VL NRQP+LHK
Sbjct: 422  LKKFLKYGNRAKIANELKV-----------------GDIVERHLLDRDIVLFNRQPSLHK 464

Query: 514  PSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQY 573
             SI A   +V+   +T R +   C+ +NADFDGDEMN+H PQ E ++AEA  ++ + +  
Sbjct: 465  LSIQAFYAKVMP-HRTFRFNECCCNPFNADFDGDEMNLHLPQTEEAKAEAIVLMGSKSNI 523

Query: 574  VRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRV 633
            V P NG+PL + IQD I    LLT+KD F +R + CQL  +S + S              
Sbjct: 524  VTPRNGEPLIAAIQDFITGGYLLTQKDVFFDRAKACQL--ASAILSQ------------- 568

Query: 634  LISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRF 693
             + RS +  LP  P I+KP  +W+GKQ+ + +L      RP                   
Sbjct: 569  -MDRSTKVELP-PPCIFKPLKMWSGKQIFSLIL------RP------------------- 601

Query: 694  NADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELS--EEK 751
                                  H+  + K     +GK         N +K+++L   +  
Sbjct: 602  ----------------------HQSSNVKINLRTKGK---------NYTKDEDLCIKDSF 630

Query: 752  LLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFT 808
            ++++ +DL+ G +DK      +   + + +   YG   A   LS L+RL   +L   GF+
Sbjct: 631  VVVHNSDLLAGCMDKGTLGSGSKNNVFYLLLRDYGEEAAAVSLSRLARLCPAYLSNRGFS 690

Query: 809  CGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGG 868
             G+ D+       + +++ L    + G    +E ++     E+   +LKS+   +     
Sbjct: 691  IGIGDVTPGLGLLQAKQSLL----DAGYSKCIEYIQ-----ELKENRLKSQPGCSPEETL 741

Query: 869  DAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQIS 928
            ++ +    +K  S +  H  ++ + EL           N    M   G+KGS +N  Q+ 
Sbjct: 742  ESMI----LKELSVIRDHAGNACLREL--------HKTNSPLTMAVCGSKGSFINISQMI 789

Query: 929  SHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGRE 988
            + +GQQ + GKRVP     + LP F      P A GF+ + F +GL P E++FH M GRE
Sbjct: 790  ACVGQQAISGKRVPNGFEDRALPHFERHAKDPAARGFVSNSFYSGLTPTEFFFHTMGGRE 849

Query: 989  GLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD-------- 1040
            GLVDTAVKT+ +GY+QR L+K+LE L   YD +VR++ G IVQF +G DG+D        
Sbjct: 850  GLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRNSMGEIVQFVFGGDGLDPSCMEGKD 909

Query: 1041 --VHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSG-------- 1090
              V     +     L   ++ R    ++         V        ++ CSG        
Sbjct: 910  KPVDFKRIMEHTQCLHPCQKDRNLNGDQL-----EKIVKAALDLEEFRDCSGDFRDELLE 964

Query: 1091 -------QLDAS-NAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQP 1142
                   QLD + N Y ME  D+     E             ++FL   ++KF+ +  +P
Sbjct: 965  FVAEFRLQLDTTHNKYKMEQADS----PEVLHQLKRVTATQVKEFLVCCRNKFMRAKIEP 1020

Query: 1143 GEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCP 1202
            G  VG +A+QS+GEP TQMTL TFH AG   MN+T G+PR++EI+  ASK+I TP+IT  
Sbjct: 1021 GTAVGAVAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN-ASKNISTPIITAH 1079

Query: 1203 L 1203
            L
Sbjct: 1080 L 1080



 Score = 44.3 bits (103), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TCG+    C GH+G++DL +PV++   F     +L+ IC  C
Sbjct: 63  CETCGKNLAECVGHYGYVDLELPVFHIGYFRATVVILQNICKTC 106


>gi|145242160|ref|XP_001393726.1| DNA-directed RNA polymerase III subunit RPO31 [Aspergillus niger CBS
            513.88]
 gi|134078271|emb|CAK96852.1| unnamed protein product [Aspergillus niger]
          Length = 1450

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 310/1000 (31%), Positives = 468/1000 (46%), Gaps = 177/1000 (17%)

Query: 265  ISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQAN 320
            ISD   +  G   K+A   +F    +  PP+  R PS G D+   E   T  L  ++Q+N
Sbjct: 247  ISDTDCELLGLNPKEARPEMFLWQFIPAPPVCIR-PSVGQDAASTEDDLTAKLGDIVQSN 305

Query: 321  IYLANAYVN-QPDNAKVIVARWMNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGL 377
            I L NA +   P    +    +M LQ +V +  D  G N A       G  Q L+ K+G 
Sbjct: 306  INLKNALLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRLKGKQGR 365

Query: 378  FRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIING 437
            FR  L GKRV+++ R+VISPDP L V+E+ +P   A  +TYPE VT +N  KL+  + NG
Sbjct: 366  FRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNG 425

Query: 438  AEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
             +  PGA + + K  T +L         I  +L                  EG ++ RH+
Sbjct: 426  TKKWPGANYIMKKGQTFKLFLKYGNLNMIADQLQ-----------------EGDVIERHI 468

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            +DGD+VL NRQP+LHK SI++H  +V +  +T R++   C+ YNADFDGDEMN+H PQ E
Sbjct: 469  EDGDIVLFNRQPSLHKLSILSHFAKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTE 527

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL-LYSSG 616
             +RAEA  ++   N    P NG+P+ S IQD I +A +L+ KD F +R  F Q+ LY  G
Sbjct: 528  EARAEAMELMGVKNNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLG 587

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
              +     F   P                 PA+ KP+ LWTGKQV   +L    +  P  
Sbjct: 588  PQTR----FDLPP-----------------PAVLKPQMLWTGKQVFN-ILMRPNKDDPVL 625

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
            V                N D    + K  K                     +G P     
Sbjct: 626  V----------------NLDAACRQFKAPK---------------------DGTP----- 643

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSA 793
                  ++ +  +  L+I  ++++ GV+DK+         + + +   YG   A   ++ 
Sbjct: 644  ------RDLDPKDSWLVIRNSEVMCGVMDKSTIGSGKKDNVFYIMLRDYGPVAAAEGMNR 697

Query: 794  LSRLFTVFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGA 849
            LSRL   +    GF+ G+ D+     +L+ K    +      +E+  +     LE   G 
Sbjct: 698  LSRLSARWFTNMGFSIGITDVYPSEKLLRSKHDLVETAYAQCDEVIAKYKAGTLEKYPGC 757

Query: 850  -EIDPI--KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
             E+  +  +L   + K  +  GD  +A        QL+K+ S  +               
Sbjct: 758  DELQTMENQLSGILSKVRQQAGDECIA--------QLSKYNSPLI--------------- 794

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
                 M TSG+KGS +N  Q+ + +GQQ + G+RV      +TLP F      P + GF+
Sbjct: 795  -----MATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFV 849

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
             + F +GL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++ 
Sbjct: 850  RNSFFSGLEPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRNSS 909

Query: 1027 GSIVQFCYGEDGVD-----------------VHQTSFISKFDA--------LAARERGRG 1061
             +IVQF YG+D +D                 +H  S   K D         +   E    
Sbjct: 910  AAIVQFQYGDDKLDPLDMEGKAKPVHFDRTFIHAESTTYKNDERSLLPAEIMEICEEMLS 969

Query: 1062 RGRNKFCDK---GSHTFVMGRNQEMI--YKKCSGQLDASNAYIMELPDAL------KDNA 1110
            + R+K   K   G+    M R+   +  ++     L++   Y+    D L       D  
Sbjct: 970  KERSKLVRKDLMGNELGYMDRSDHGVDQFESARDFLESIQQYVATKADKLISRGGDIDPN 1029

Query: 1111 EKFADKFLSN-----EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNT 1165
            ++ + K L++     E   + F+     K+  +  + G  VG + +QS+GEP TQMTL T
Sbjct: 1030 DERSQKGLNHTGKLTERTLRTFISSCLMKYKKAQVEAGHAVGAVGAQSIGEPGTQMTLKT 1089

Query: 1166 FHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLV 1205
            FH AG   M++T G+PR++EI+  ASK+I TPV+ C L+ 
Sbjct: 1090 FHFAGVAGMSITQGVPRIKEIIN-ASKEISTPVVACELVT 1128



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C+TCG    +C GHFGH+ LV+P ++   F  + T+L+ +C  C      +A RR   + 
Sbjct: 78  CQTCGGTLQICNGHFGHVRLVLPAFHVGYFKRVITILQEVCKECSRILLPEADRRAYLRE 137

Query: 58  VRK 60
           +R+
Sbjct: 138 MRR 140


>gi|336271863|ref|XP_003350689.1| hypothetical protein SMAC_02360 [Sordaria macrospora k-hell]
 gi|380094851|emb|CCC07353.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1701

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 265/736 (36%), Positives = 385/736 (52%), Gaps = 91/736 (12%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC   Q  CPGH GHI+L VPVY+P+  +  Y LL+  C +CH F+  RRE+ +    
Sbjct: 62  CTTCNLGQSQCPGHPGHIELPVPVYHPVFMDQAYRLLRAQCVYCHRFRLPRREIHRYSCM 121

Query: 61  LELIIKGDIIAAKSLD----------------LDLPSESSNPEDSDVSNKSSCSMVTPRG 104
           L L+  G +  A+ +D                 D+P    + E  +  N  + S +  R 
Sbjct: 122 LRLLQCGLLKEAQMIDSFGESEFGSTIRQFQLADVPDMEDD-EAEEEGNNLNDSTIRQRE 180

Query: 105 NYDNVRNLKPQEWTSLQF-----------AEAKLALL-QFLK--IETTKCGNCKAKNPRI 150
            Y  VRN+  +  T +             A+ + AL+ +FL   I+  KC  C   +P  
Sbjct: 181 AY--VRNVLREHRTKVTMRDINKGKHEGAADMRRALVKEFLAAIIKDKKCRTCDGISPVY 238

Query: 151 SKPTFGWIHMNGMPHADIRANLIRGCNLGETFS--GGE--EEKDLGASSDVDAPETHSFN 206
            K  +  I    +   +  A    G    +  +  GG+  +  D    +D+++  + S N
Sbjct: 239 RKDRYTKIFERDLTQKEKAAMAQAGRKRADALAMKGGKKKDHDDDEGVADIESTASESDN 298

Query: 207 GTFPGTQ---DTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCS 263
               G +   +        GS +      +++ L    +   +VK+ +  L++ E E+ +
Sbjct: 299 SEGEGEELDENGDVVMTDAGSKSKTKEKAEKRALPQRYISSLEVKERLNFLFQKEQEIMA 358

Query: 264 FI-SDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIY 322
            + S   +    K     +FF+  +LVPP KFR  ++ GD V E  Q  L   +L+ +  
Sbjct: 359 LLFSSKPRPKHAKPMTADMFFIQTLLVPPNKFRPEARMGDQVTEAQQNSLYKLILRGSSM 418

Query: 323 LA--------NAYVNQPDNAK------VIVARWMNLQQSVNVLFDG-----KNAAGQRDM 363
           +A         A  N P++ +       +   W  LQ +VN L D      + AAG+R+ 
Sbjct: 419 VAQISREVSETAKGNAPEDGRRARDINALYQAWTQLQDAVNSLIDRDKNPVQGAAGKRN- 477

Query: 364 ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVT 423
             GI Q LEKKEGLFR+ +MGKRVN+A RSVISPDP +  +EIG+PP FA +LTYPE VT
Sbjct: 478 EDGIKQKLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETSEIGVPPVFARKLTYPEPVT 537

Query: 424 PWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIV-QPGK 482
             N   LR+++ING E  PGA+          +       +++  K +  R A+  Q   
Sbjct: 538 SHNYNDLRNAVINGMERWPGASA---------IEMENGQIVNLRNKSEDERHALANQLLA 588

Query: 483 DSDNEFEG---KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 539
            ++N F G   K V+RHL +GDVVL+NRQPTLHKPSIM H VRVL GEKT+RMHYANC+T
Sbjct: 589 PTNNNFSGVRNKKVHRHLTNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNT 648

Query: 540 YNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
           YNADFDGDEMN+HFPQ+E++RAEA  + + ++QY+  + G PLR LIQDH+  + +L  K
Sbjct: 649 YNADFDGDEMNMHFPQNEIARAEALQLADTDHQYISGTAGKPLRGLIQDHLSVSVILCNK 708

Query: 600 DTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
           DTF +R  + QL+Y++    SG             I   + E++P  PAI KP P WTGK
Sbjct: 709 DTFFDRANYHQLIYAALRPESG------------HIMGDKIELVP--PAIIKPVPRWTGK 754

Query: 660 QVITAVLNHITRGRPP 675
           QVIT +L +I   +PP
Sbjct: 755 QVITTILKNI---KPP 767



 Score =  368 bits (945), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 213/482 (44%), Positives = 292/482 (60%), Gaps = 36/482 (7%)

Query: 749  EEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH 805
            EE  + +++ + V G++DK+Q   +  G +H++ E+YG + AG LLS + RL T +L M 
Sbjct: 791  EEGQVTFRDGEFVTGILDKSQLGPSSGGFIHSIHEVYGPSAAGKLLSCMGRLLTRYLAMV 850

Query: 806  GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEI--DPIKLKSEIEKA 863
             F+CG+DDL++    E +R+  +  + +IG  V  + + LE+      DP+ L+  +E+ 
Sbjct: 851  AFSCGMDDLVMTPKGEADRREKIKAAADIGLEVAAKYVSLEEQKPTPEDPLLLQ-RLEEV 909

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
            MR   D      D+ M +Q     SS +    L  GL K   KN +  MTTSGAKGS VN
Sbjct: 910  MRN--DKKQENLDLLM-NQRCAQLSSEITKTCLPAGLQKKFPKNQMQSMTTSGAKGSPVN 966

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
               IS +LGQQ LEG+RVP MVSGKTLPSF P+D   RAGG+I+ RFLTG+RPQEYYFH 
Sbjct: 967  ANLISCNLGQQVLEGRRVPVMVSGKTLPSFKPFDTNARAGGYIVQRFLTGIRPQEYYFHH 1026

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGL+DTAVKTSRSGYLQRCLIK +E LK+SYD SVRD+DGSI+QF +GEDG+D+ +
Sbjct: 1027 MAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVSYDSSVRDSDGSIIQFLFGEDGLDISK 1086

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYK-----KCSGQLDASNAY 1098
              +++ F+ +  R          + ++G+      ++  MI +     K  G  +  N  
Sbjct: 1087 QKYLNDFEFI-LRNMTSELAHLHYSEEGTQALFEHKDS-MIKQMKAALKSRGTRNPLNPI 1144

Query: 1099 IMELPDALK--DNAEKFADKFLSNEMAKQDFL------------------KLVKHKFVLS 1138
              ++  AL     +E F +K        +D L                  K++  K++ S
Sbjct: 1145 QTDVDPALYAFATSENFFEKMTKYVKENKDGLIKEKKSDSSGVVVRKTAEKILAAKYIRS 1204

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
            + +PGE VG++A QSVGEPSTQMTLNTFHLAG    NVTLGIPRL+EIL  AS  I TP 
Sbjct: 1205 MVEPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASSKISTPA 1264

Query: 1199 IT 1200
            +T
Sbjct: 1265 MT 1266


>gi|321473486|gb|EFX84453.1| hypothetical protein DAPPUDRAFT_209553 [Daphnia pulex]
          Length = 1387

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 298/965 (30%), Positives = 457/965 (47%), Gaps = 168/965 (17%)

Query: 282  FFLGVVLVPPIKFRLPS-----KGG----DSVMEHPQTVLLSKVLQANIYLANAYVNQPD 332
              L  V VPP+  R PS     K G    D  M+  + V L+ V+  +  +         
Sbjct: 250  MILTRVPVPPVCIR-PSVVSDLKSGTNEDDLTMKLTEIVFLNDVIVKHRLIGA------- 301

Query: 333  NAKVIVARWMNLQQSVNVLFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRV 387
            N+ +I+  W  LQ    +  +G+ +    +M     + GI Q L+ K+G FR  L GKRV
Sbjct: 302  NSSLILEAWDFLQLQSALYINGELSGIPLNMQPKKSSRGIIQRLKGKQGRFRGNLSGKRV 361

Query: 388  NYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY 447
            +++ R+VISPDP L ++++G+P   A  LT+P RV   N+  +R  + NGA++HPGA + 
Sbjct: 362  DFSGRTVISPDPNLRIDQVGVPELVAKILTFPTRVNEANIELMRKLVRNGADVHPGANYL 421

Query: 448  LDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNR 507
             +K S MR       R ++ R L                   G ++ RH+ D D+VL NR
Sbjct: 422  QEKSSGMRKFLKYGNRENLARNLKL-----------------GDLIERHMMDEDIVLFNR 464

Query: 508  QPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIV 567
            QP+LHK SIM H  ++L   +T R +   C+ YNADFDGDEMN+H PQ E +RAEA+ ++
Sbjct: 465  QPSLHKLSIMCHRAKILP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEAWILM 523

Query: 568  NANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTG 627
                  V P NG+ L + IQD I  A LLT KD F +R + CQ++ S             
Sbjct: 524  GNKYNLVTPRNGELLIAAIQDFITGAYLLTLKDAFFDRAKTCQMVAS------------- 570

Query: 628  KPGQRVLISRSEQEVLPLL--PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLP 685
                  +++  E  ++  L  P I KP  LW+GKQ+ + +L      RP          P
Sbjct: 571  ------MLAGDEVNMVIKLPPPCIQKPAALWSGKQIFSLIL------RPN---------P 609

Query: 686  QDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEK 745
             D  K       +   KKN+                                      E 
Sbjct: 610  GDRIKVNLRTKGKEYSKKNE--------------------------------------EF 631

Query: 746  ELSEEKLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFL 802
             +++  LL+  ++++ G +DK+     +   + + +   YG + A   +  L R+ + ++
Sbjct: 632  CVNDGFLLVRNSEVLAGCVDKSTIGSGSKINIFYVLLRDYGEDFAIQAMWKLCRVASYYM 691

Query: 803  QMHGFTCGVDDL----LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKS 858
               GF+ G+ D+     +LK+K+    +     +E  + + +  L    G   +   L+S
Sbjct: 692  MNRGFSIGIGDVTPGKTLLKEKQILLDSGYSKCDEYIRLLTIGQLPCLPGCN-EEESLES 750

Query: 859  EIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAK 918
            +I K + G  D A      ++      H S+S +                  +M+ SG+K
Sbjct: 751  KILKELSGIRDQAGEVCKKEL------HPSNSPL------------------VMSKSGSK 786

Query: 919  GSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQE 978
            GS +N  Q+ + +GQQ L GKRVP     ++LP F      P A GF+ + F +GL P E
Sbjct: 787  GSYINISQMIACVGQQALNGKRVPNGFEDRSLPHFKRHSKIPAAKGFVSNSFYSGLTPTE 846

Query: 979  YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDG 1038
            ++FH M GREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR++ G I+QF YG DG
Sbjct: 847  FFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCCQYDSTVRNSAGEIIQFVYGGDG 906

Query: 1039 VDV-------HQTSFISKFDALAAR----------ERGRGRGRNKFCDKGSH-TFVMGRN 1080
            +D            F    D + A           +    +  N   D  S  T  +   
Sbjct: 907  LDPTYMEAKDRPVDFQRALDHIKAASPYPDEDPLDDIELQQAFNTIMDTDSFKTLGIDFK 966

Query: 1081 QEM-IYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSL 1139
             E+ ++ +   +   S   I ++        EK  ++    ++   +F    K K+  + 
Sbjct: 967  HELRVFLESQVKRIKSVRKIFQMEGRPLHPVEKHLERITVGQLV--EFCDFSKEKYERAK 1024

Query: 1140 AQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVI 1199
             +PG  VG L +QS+GEP TQMTL TFH AG   MN+T G+PR++EI+  ASK I TPVI
Sbjct: 1025 IEPGTAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN-ASKAISTPVI 1083

Query: 1200 TCPLL 1204
            +  LL
Sbjct: 1084 STQLL 1088



 Score = 48.1 bits (113), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHH 46
           C TCG+    C GHFG+IDL +PV++   F    T+L+ IC  C H
Sbjct: 69  CGTCGKGLDECVGHFGYIDLELPVFHVGYFKATITVLQTICKTCSH 114


>gi|213410469|ref|XP_002176004.1| DNA-directed RNA polymerase III complex large subunit Rpc1
            [Schizosaccharomyces japonicus yFS275]
 gi|212004051|gb|EEB09711.1| DNA-directed RNA polymerase III complex large subunit Rpc1
            [Schizosaccharomyces japonicus yFS275]
          Length = 1406

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 307/961 (31%), Positives = 452/961 (47%), Gaps = 167/961 (17%)

Query: 290  PPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVN 349
            PP+  R       +  E   T+ L++++  +  L  A +N+      ++ +W  LQ SV 
Sbjct: 254  PPVTIRPTVAQEGATTEDDITIKLTEIVWTS-SLIRAALNKGTPINSLMEQWEFLQLSV- 311

Query: 350  VLFDGKNAAGQR--DMAS----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
             L+      G R  DM S    G CQ L+ K+G FR  L GKRV+++ R+VISPDP L +
Sbjct: 312  ALYINSELPGLRPPDMPSKPTRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLQI 371

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMR 463
            +++ +P   A  LTYPE+VT  N+  LR  + NG ++HPGA + +D+ + ++       R
Sbjct: 372  DQVAVPLRIAKILTYPEKVTDQNIDALRTRVTNGPDVHPGANYVVDRDTGIKRFLRFGNR 431

Query: 464  ISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRV 523
              I  +L                   G  V RHLQD DVVL NRQP+LHK SIMAH+V+V
Sbjct: 432  KRIAEELHV-----------------GDTVERHLQDNDVVLFNRQPSLHKLSIMAHLVKV 474

Query: 524  LKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLR 583
             +  +TLR +   C  YNADFDGDEMN+H PQ E +R EA  ++   N  V P NG+P+ 
Sbjct: 475  -RPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMGIKNNLVTPRNGEPII 533

Query: 584  SLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVL 643
            +  QD I ++ LL+ KD FL+R  FC L                      ++  S    +
Sbjct: 534  AATQDFITASYLLSLKDCFLDRKTFCNLCC-------------------FMVDASVHIDI 574

Query: 644  PLLPAIWKPEPLWTGKQVITAVL--NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDR 701
            P  PAI KP  LWTGKQ+   ++  NH++    P +V            TR  A      
Sbjct: 575  PP-PAILKPRCLWTGKQLFGVLMRPNHLS----PVMVNLAAN-------TRSIA------ 616

Query: 702  KKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVR 761
                KGK S       D                                 LLI  ++L+ 
Sbjct: 617  ----KGKCSPPEMCPNDGY-------------------------------LLIQNSELLA 641

Query: 762  GVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILK 818
            GV+DK+   D     L + +   YG   A   ++ L++L   +L   GF+ G++D+    
Sbjct: 642  GVVDKSIVGDGKKNSLFYVILRDYGPIEAAATMNRLAKLCARYLGNRGFSIGINDV---- 697

Query: 819  DKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMK 878
               +  +   H  E + ++    A  + D   +   K   E +  M        A  + K
Sbjct: 698  ---QPGQRLYHTKEALVEK----AYSVSDDLIMQYAKGTLECQPGMN-----QEATLESK 745

Query: 879  MTSQLNKHTSSSVINELLSEGLLKPTG-KNWISLMTTSGAKGSKVNFQQISSHLGQQELE 937
            ++S L+K      + + + E  +K  G +N   +M T G+KGSK+N  Q+ + +GQQ + 
Sbjct: 746  ISSTLSK------VRDDVGETCMKELGSRNAPLIMATCGSKGSKINVSQMVACVGQQIIS 799

Query: 938  GKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKT 997
            GKRVP     ++LP F      P A GF+ + F TGL P E+ FH ++GREGLVDTAVKT
Sbjct: 800  GKRVPDGFQDRSLPHFRKNSKHPLAKGFVSNSFYTGLTPTEFLFHAISGREGLVDTAVKT 859

Query: 998  SRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE----------DGVDVHQTSFI 1047
            + +GY+ R L+K+LE L  +YD +VR ++ SIVQF YG+          DG  V      
Sbjct: 860  AETGYMSRRLMKSLEDLTSAYDGTVRSSNSSIVQFTYGDDGLDPTYLEGDGTPVAFERCW 919

Query: 1048 SKFDALAARERGRGR-------------GRNKFCDKGSHTFVMGRNQEMIYK--KCSGQL 1092
            S    +   E   G                 KF    +  F+      +I +  K   Q+
Sbjct: 920  SHSSNITYNEDDSGLLPYKIIEETESILSSRKFTANCTENFIESVRTFVIERLAKKLAQV 979

Query: 1093 DASN--AYIMELPDALKDN-----------AEKFADKFLS-NEMAKQDFLKLVKHKFVLS 1138
             A+   A  +E P     +           A K  D  L  ++     FL+    K++ +
Sbjct: 980  RANRQLAPKLERPSEDDFDDFENDDFAPLAARKSVDNVLRVSKKQLYTFLQFCWEKYMKA 1039

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG + + S+GEP TQMTL TFH AG      TLG+PR++EI+  A+K I TP+
Sbjct: 1040 KVEPGTAVGAVGAHSIGEPGTQMTLKTFHFAGVAA-QTTLGVPRIKEIIN-AAKTISTPI 1097

Query: 1199 I 1199
            I
Sbjct: 1098 I 1098



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG+    C GHFGH+ L +PV+N   F    T+L+ IC  C     S+RE +  +++
Sbjct: 66  CATCGEGVADCIGHFGHVRLALPVFNIGYFKTTLTILQNICKDCATVLVSQREKQNFLKE 125

Query: 61  L 61
           L
Sbjct: 126 L 126


>gi|345489196|ref|XP_001602571.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Nasonia
            vitripennis]
          Length = 1355

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 314/1008 (31%), Positives = 472/1008 (46%), Gaps = 187/1008 (18%)

Query: 242  LLPSDVKDIIEKLWENEFEL------CSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFR 295
            L P +V  ++E++ E +  L      CS   D+               L  + VPPI  R
Sbjct: 190  LNPLEVIGLLERIPERDIPLLLMNPQCSVPRDL--------------ILTRIPVPPISIR 235

Query: 296  LPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV--IVARWMNLQQSVNV 350
             PS   D      E   T+ LS++L  N  +    +++    K+      W  LQ  V +
Sbjct: 236  -PSIVSDLKAGTNEDNLTMKLSEILLINEAIQ---IHRQRGLKIQNYTEDWEFLQLHVAL 291

Query: 351  LFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNE 405
              + + +     M       G+ Q L+ K+G FR  L GKRV+++ R+VISPDP L + +
Sbjct: 292  YINSEMSGIPPSMQPQKAGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLRIEQ 351

Query: 406  IGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMR-I 464
            +G+P + A  LTYPERV   N+  +R  + NG ++HPGA         + +  NK+ R +
Sbjct: 352  VGVPIHVAKILTYPERVNKCNIELMRRLVKNGPDVHPGANF-------IEIGKNKERRFL 404

Query: 465  SIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVL 524
              G +   ++          D ++ G +V RHL DGDVVL NRQP+LHK SIMAH  +VL
Sbjct: 405  RYGNRQKMAQ----------DLQY-GDIVERHLHDGDVVLFNRQPSLHKLSIMAHKAKVL 453

Query: 525  KGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRS 584
            +  +T R +   C+ YNADFDGDEMN+H PQ E +RAEA  ++   +  V P NG+ L +
Sbjct: 454  EN-RTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALVLMGNKSNLVTPRNGELLIA 512

Query: 585  LIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLP 644
              QD I    LLT+KDTFLN+ +  QL     +S    G  T           + Q  LP
Sbjct: 513  ATQDFITGGYLLTQKDTFLNKSQVSQL-----ISCLLAGEDT-----------TMQITLP 556

Query: 645  LLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKN 704
              PAI KP  +WTGKQ                            F      +++   K N
Sbjct: 557  K-PAILKPAIMWTGKQ---------------------------IFSVILRPNEKCPVKAN 588

Query: 705  DKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVI 764
             K K                    G+     E       E  +++  ++I  + L+ G +
Sbjct: 589  LKTK--------------------GRAYTSNE-------ELCINDSYVIIRNSQLLAGSM 621

Query: 765  DKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL----IL 817
            DK+     A   + + +   +G + A  ++  L+R+ + FL   GF+ G+ D+     +L
Sbjct: 622  DKSTLGSGAKQNIFYILLRDWGEDVAALVMWRLARIASYFLMNRGFSIGIGDVTPGHSLL 681

Query: 818  KDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDM 877
            + K+    N      E  +++    L  + G         SE E         ++    +
Sbjct: 682  RAKQELLNNGYGKCTEYIRKMEAGKLPCQPGC--------SEEE---------SLEAMIL 724

Query: 878  KMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELE 937
            K  S +  H     + EL       P+    +  M  SG+KGS +N  Q+ + +GQQ + 
Sbjct: 725  KELSVIRDHAGKVCLKEL------HPSNSPLV--MALSGSKGSFINISQMIACVGQQAIS 776

Query: 938  GKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKT 997
            G RVP     + LP F  +   P A GF+ + F +GL P E++FH M GREGLVDTAVKT
Sbjct: 777  GHRVPNGFEDRALPHFEKYSKVPAAKGFVENSFYSGLTPTEFFFHTMGGREGLVDTAVKT 836

Query: 998  SRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARE 1057
            + +GY+QR L+K+LE L + YD +VR++ G IVQ  YG D +D    +++   D     +
Sbjct: 837  AETGYMQRRLVKSLEDLCLHYDLTVRNSTGDIVQVLYGGDAMD---PTYMEGKDCPVDYK 893

Query: 1058 RGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDA------SNAYIMELPDALKDNAE 1111
            R     ++    + +H      +   I K  S  LD+      S+ +  EL   LK  A 
Sbjct: 894  RVLDDVKS----RSTHITEDPLDGPGIMKATSLLLDSEDFACLSDEFKQELAQFLKAVAI 949

Query: 1112 KFAD--------------KFLSNEMAKQ--DFLKLVKHKFVLSLAQPGEPVGLLASQSVG 1155
            K A               K++      Q  +F+   K K++ +  +PG  VG LA+QS+G
Sbjct: 950  KIARVRQHIKSNDNQPVYKYIERLTVSQLAEFIHTCKEKYMKAKIEPGTAVGALAAQSIG 1009

Query: 1156 EPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            EP TQMTL TFH AG   MN+T G+PR++EI+  A+  I TP+IT  L
Sbjct: 1010 EPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN-ANPKISTPIITAAL 1056


>gi|71024147|ref|XP_762303.1| hypothetical protein UM06156.1 [Ustilago maydis 521]
 gi|46101808|gb|EAK87041.1| hypothetical protein UM06156.1 [Ustilago maydis 521]
          Length = 1400

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 320/1064 (30%), Positives = 499/1064 (46%), Gaps = 188/1064 (17%)

Query: 199  APETHSFNGTFPGTQDTAARRHQKGSGAV-PSGFKKQKDLFSGPLLPSDVKDIIEKLWEN 257
            A E   F  +F       A   + G+G + P   K Q+DL      P    D+ +++ + 
Sbjct: 184  AAEHDEFKASF-------ATNIKMGNGDISPHLNKAQEDLN-----PLKALDLFKRISDE 231

Query: 258  EFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGD-SVMEHPQTVLLSKV 316
            + EL     +     FG+      +    + VPP+  R PS   D +  E   T+ L+++
Sbjct: 232  DCELLGLRPE-----FGRPEE---YIWQYICVPPVCIR-PSVAQDGATNEDDVTIKLTEI 282

Query: 317  LQANIYLANAYVN--QPDNAKVIVARWMNLQQSVNVLFDGK-----NAAGQRDMASGICQ 369
            +  N  L    V   +      +V +W  LQ +V +  + +        GQ+  + G CQ
Sbjct: 283  IFTNSLLKLGLVKGGKGTTTSQLVQQWEFLQLTVALYINSELPGVPTQPGQKP-SRGFCQ 341

Query: 370  LLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVK 429
             L+ K+G FR  L GKRV+++ R+VI PDP L ++E+ +P   A  LTYPERV   N+ +
Sbjct: 342  RLKGKQGRFRGNLSGKRVDFSGRTVIGPDPNLKIDEVAVPQRVAKILTYPERVFQHNIEQ 401

Query: 430  LRDSIINGAEIHPGATHYLD-KLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEF 488
            LR ++ NG +IHPGA + +D K    R      MR  +  KL                  
Sbjct: 402  LRQAVRNGTDIHPGANYLMDGKTGFKRFLKFPGMREELAEKLRV---------------- 445

Query: 489  EGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 548
             G +V RH++DGD+VL NRQP+LHK SIM+H  ++ +  +T R++   C+ YNADFDGDE
Sbjct: 446  -GDVVERHIRDGDIVLFNRQPSLHKLSIMSHRAKI-RPWRTFRLNECACNPYNADFDGDE 503

Query: 549  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
            MN+H PQ E +R EA  ++   +  V P NG+P+ + IQD I ++ L++K+D F +R +F
Sbjct: 504  MNMHVPQTEEARTEATVLMGVKHNLVTPRNGEPIIAAIQDFITASYLISKRDRFFDRAQF 563

Query: 609  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
             Q+   S  S + L                  ++ P  PAI KP  LWTGKQV++ ++  
Sbjct: 564  SQI--CSYFSDADL----------------HIDIPP--PAIMKPVRLWTGKQVMSCLI-- 601

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
                RP                         +RK      L    +  +  +G       
Sbjct: 602  ----RP-------------------------NRKSPHLVNLEAQCRTFEKPTG------- 625

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSN 785
            G P           K+   ++  L+I  + ++ GV DK+   D     +   +   YG +
Sbjct: 626  GHP-----------KDMSPNDGWLVIVNSQVMCGVFDKSTVGDGKKNSVFGVMLRDYGPD 674

Query: 786  TAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALEL 845
             A T ++ L++    +L   GF+ G++D++      + R N     E      + E L+L
Sbjct: 675  AAITAMNRLAKTCARWLANQGFSLGINDVI---PGPKLRMNKDAKVEA----AYAECLDL 727

Query: 846  EDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTG 905
                          IEKA  G  +        +    +     S V +++    + + + 
Sbjct: 728  --------------IEKAKYGKLENLPGCDQEQTLENMISGVLSGVRSDVGEICMTELSR 773

Query: 906  KNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGF 965
             N   +M   G+KGSK+N  Q+ + +GQQ + G RVP     ++LP F      P + GF
Sbjct: 774  HNAPLVMAVCGSKGSKINVAQMVACVGQQIIAGSRVPNGFQDRSLPHFAKKSKDPPSKGF 833

Query: 966  IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDA 1025
            + + F +GL P E+ FH ++GREGLVDTAVKT+ +GY+QR L+K LE L   YD SVR++
Sbjct: 834  VRNSFFSGLTPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDLSVRNS 893

Query: 1026 DGSIVQFCYGEDGVDVHQTSF----ISKF----DALAARERGRGRG-------------- 1063
             G +VQF YG+DG+D  +       I  F      LA      GRG              
Sbjct: 894  VGGVVQFIYGDDGLDPAELEGNAMPIEPFRLWRHCLAITHHVAGRGLLPYEIMEVVKREL 953

Query: 1064 -RNKF---CDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLS 1119
              ++F   C +     V     E +Y++    +    A+ M   D+ +++ ++  D  L 
Sbjct: 954  SSDRFVKTCTQKYRDSVYEFLYENVYQRA---IKMREAFGMYGADSREEHWDEQTDLSLG 1010

Query: 1120 ---------------NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLN 1164
                            E+A   FL+    K++ +  +PG  VG + +QS+GEP TQMTL 
Sbjct: 1011 ADRAQWAIVNNKTKIKEVAVLAFLEQCYIKYMKAKIEPGSAVGAVGAQSIGEPGTQMTLK 1070

Query: 1165 TFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKT 1208
            TFH AG   MNVTLG+PR++EI+  A+K I TP+I   L+  K+
Sbjct: 1071 TFHFAGVASMNVTLGVPRIKEIIN-AAKVINTPIIEAKLVSEKS 1113



 Score = 42.4 bits (98), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC  +   C GH+G+I LV+PV++   F     +L+ IC  C
Sbjct: 68  CETCHLKMADCVGHYGYIKLVLPVFHVGFFKHTVAILQSICKNC 111


>gi|167043884|gb|ABZ08573.1| putative RNA polymerase Rpb1, domain 2 [uncultured marine
            crenarchaeote HF4000_APKG3E18]
          Length = 1273

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 313/988 (31%), Positives = 460/988 (46%), Gaps = 178/988 (18%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P+ F ++  L    LLP  +++   ++ +++  L ++  D  +  +        F L  +
Sbjct: 169  PTIFIEKTKLGENRLLPITIRERFSQITDDDLRLLNYNVDTARPEW--------FILQAL 220

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNL- 344
             VPP+  R PS   +S +  E   T  +  +++ N  L  +   +     +IV   ++L 
Sbjct: 221  PVPPVTVR-PSIILESGIRSEDDLTHKMVDIIRVNQRLKES--KEAGTPPLIVQDLVDLL 277

Query: 345  QQSVNVLFDGK-NAAGQRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
            Q      FD + +   Q    SG     + Q L+ KEG FR  L GKRV+++ R+VISPD
Sbjct: 278  QYHCTTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPD 337

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP 458
            P L + E+G+P   A +LT PE VT WN+ KL+  ++NG    PG  + +        P 
Sbjct: 338  PNLDLGEVGVPVQIATKLTIPEIVTEWNIEKLKKLVVNGPNTFPGVNYIVR-------PD 390

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
              K+R+            +  P   +D+   G +V RHL DGD+VL NRQP+LH+ SIMA
Sbjct: 391  GVKIRLDF----------VEDPSIIADSLEIGYLVERHLSDGDIVLFNRQPSLHQMSIMA 440

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H VRVL G KT R+H + C  YNADFDGDEMN+H PQ E +RAEA  ++    Q + P  
Sbjct: 441  HHVRVLPG-KTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAMLLMRVQEQLISPRF 499

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            G P+   ++D I    LLTK DT L + EF           + LG + GK          
Sbjct: 500  GGPIIGGLRDFITGVYLLTKDDTTLTKQEFSNY--------AMLGRYDGK---------- 541

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
                LP      K   L+TGKQ+ +  L                  P DF          
Sbjct: 542  ----LPEPKINSKNGLLYTGKQLFSLFL------------------PSDF---------- 569

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND 758
                         T+K  +  +GK+K+VV                          I   +
Sbjct: 570  ---------NFVMTSKWSRGTNGKQKDVV--------------------------IKNGE 594

Query: 759  LVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
            LV GVIDK          ++H + + YG+  A   L+++  +   F+  +GF+ G  DL 
Sbjct: 595  LVSGVIDKTGIGAEEPESILHRIAKDYGNEKANKFLNSVLIIIKQFITDYGFSYGYSDLE 654

Query: 816  ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYF 875
            +    E++R+   +  ++  K V          AEI   K K  + K +RG   A  A  
Sbjct: 655  L---SEKDRQAIDNDLQQTYKTV----------AEIIADKNKGTL-KGLRGMTIAETA-- 698

Query: 876  DMKMTSQLNKHTSSSVI--NELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQ 933
            + K+T +L K    + I  N  L++        N   +M T+GA+GS +N  Q++  LGQ
Sbjct: 699  EAKITYELAKARDRAGITANSNLAD-------DNAGKIMATTGARGSALNVGQMAGALGQ 751

Query: 934  QELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDT 993
            Q   GKR+      +TLP F   D  P + GF+   F  GL   E++FH M GREGLVDT
Sbjct: 752  QSRRGKRLHTGYGNRTLPHFKEHDDNPDSHGFVKSNFRDGLSVLEFFFHAMGGREGLVDT 811

Query: 994  AVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDAL 1053
            AV+T +SGY+QR LI   E +++ YD +VRD  G I+QF YGEDG+DV            
Sbjct: 812  AVRTQQSGYMQRRLINAFEHIRLEYDGTVRDPHGHIIQFLYGEDGIDV------------ 859

Query: 1054 AARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKF 1113
            A  + G     N+  +          +Q +I        D  N+   +            
Sbjct: 860  AKSDHGEAFNINRLIE----------SQSIIDSGSKATKDEINSISKKYTKVFNPKLTSM 909

Query: 1114 ADKFLSN-EMAKQDFLKLVKHKFVL---SLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
             +  L N +++KQ    + K    L   S  +PG+ VG++ +QS+GEP TQMTL TFH A
Sbjct: 910  VNDGLHNSKLSKQGLENVCKKGLELYDKSKVEPGQAVGIVTAQSIGEPGTQMTLRTFHTA 969

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTP 1197
            G  E NVTLG+PR+ E++  A K   TP
Sbjct: 970  GIAEKNVTLGLPRIIELVD-ARKKPSTP 996



 Score = 49.3 bits (116), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 25/49 (51%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKA 49
           C TCG     CPGHFGH++L  PV +    + ++ LL   C  C   K 
Sbjct: 66  CLTCGNTSARCPGHFGHVELAEPVLHIAFIDNIHKLLNATCRACSRLKV 114


>gi|169869303|ref|XP_001841218.1| DNA-directed RNA polymerase III largest subunit [Coprinopsis cinerea
            okayama7#130]
 gi|116497686|gb|EAU80581.1| DNA-directed RNA polymerase III largest subunit [Coprinopsis cinerea
            okayama7#130]
          Length = 1403

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 297/971 (30%), Positives = 463/971 (47%), Gaps = 157/971 (16%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVM-EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
            F    + VPP+  R PS   D    E   TV L++++  N  +           +  + +
Sbjct: 246  FIWQYLSVPPVCIR-PSVAQDGASNEDDITVKLTEIVFTNALIKQGLSKGAPTPQ-FMEQ 303

Query: 341  WMNLQQSVNVLFDGK-----NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
            W  LQ SV +  + +     +  GQ+ +  G  Q L+ K+G FR  L GKRV+++ R+VI
Sbjct: 304  WEFLQLSVAMYINSELPGVPSQMGQKPI-RGFVQRLKGKQGRFRGNLSGKRVDFSGRTVI 362

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMR 455
            SPDP L ++E+ +P   A  LTYPERVT  N+  LR +I NG ++HPGA +Y+ +  T +
Sbjct: 363  SPDPNLRIDEVAVPERVAKILTYPERVTMHNIETLRQAIRNGPDVHPGA-NYVARGETKK 421

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
                    +  G     +R AI      +DN   G +V RH+ DGD+VL NRQP+LHK S
Sbjct: 422  F-------LKFG-----NRQAI------ADNLAIGDIVERHVIDGDIVLFNRQPSLHKLS 463

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            IM H  ++ +  +T R++   C  YNADFDGDEMN+H PQ E +R EA  +++  +  V 
Sbjct: 464  IMCHRAKI-RPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVT 522

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 635
            P NG+P+ S IQD I ++ L+++KD F +R EF Q+    G +   +             
Sbjct: 523  PRNGEPVISAIQDFITASFLISRKDRFFDRREFTQICCYLGDADLHI------------- 569

Query: 636  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
                 ++ P  P IWKP  LWTGKQ+   ++      RP                     
Sbjct: 570  -----DIPP--PTIWKPVQLWTGKQIFNVLM------RP--------------------- 595

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEK--LL 753
            +KQS    N + K  K                E KP   +      + + +LS     L+
Sbjct: 596  NKQSKIFINVESKCQKWE--------------EAKP---QNFPPRITLQPDLSPNDGWLV 638

Query: 754  IYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
            +  ++++ GV+DKA         +   +   YG + A   +  L++L   +L  +GF+ G
Sbjct: 639  VVNSEIMCGVMDKATVGSGKKKSIFGVILRDYGPHEAAIAMGRLAKLCARYLANYGFSLG 698

Query: 811  VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
            ++D+             + G     ++  L      D  ++  +  K ++E       + 
Sbjct: 699  INDV-------------IPGPVLSSQKDVLVEKAYADCEDLIALAKKGKLENKPGCNQEQ 745

Query: 871  AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
             +      + S++ +      + EL        +  N   +M T G+KGS +N  Q+ + 
Sbjct: 746  TLEAMISSVLSKVREEVGQICMKEL--------SRHNAPLIMATCGSKGSVINVSQMVAC 797

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            +GQQ + G RVP     ++LP F      P + GF+ + F +GL   E+ FH ++GREGL
Sbjct: 798  VGQQIIAGHRVPNGFQDRSLPHFPKKSKTPPSKGFVRNSFYSGLVATEFLFHAISGREGL 857

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV-------DVHQ 1043
            VDTAVKT+ +GY+QR L+K LE L   YD SVR++ G +VQF YG+DG+       D   
Sbjct: 858  VDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRNSTGGVVQFQYGDDGLDPACLEGDAQP 917

Query: 1044 TSFISKFDALAARERGRGRGRNKF-------CDKGSHTFVMG-------RNQEMIYKKCS 1089
                  +    AR   + RG   F           S  F            ++ I KK +
Sbjct: 918  LDMDRSWRHAQARSNRKTRGLLPFEIIQIVETTLASPRFTQSCLPAYCDAVRDFIVKKVA 977

Query: 1090 GQLDASNAY-----IMELPDA------LKDNAEKFADKFLSNEMAKQD-----FLKLVKH 1133
             ++ +  A       +E P+       L   A +   + + N+    +     FL +   
Sbjct: 978  SRVASVRAKHDMFDALEKPEEWDEEMDLTLGASEACKRVVDNKAKVTESHLRIFLDICWE 1037

Query: 1134 KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKD 1193
            ++V +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR++EI+  A+K 
Sbjct: 1038 RYVKARIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-AAKA 1096

Query: 1194 IKTPVITCPLL 1204
            I TP+I+C L+
Sbjct: 1097 ISTPIISCKLV 1107



 Score = 43.9 bits (102), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TCGQ    C GH+ +I L VPV++   F     +L+ IC  C
Sbjct: 66  CETCGQSSVNCVGHYAYIKLCVPVFHIGYFKHTIGILQSICKSC 109


>gi|358371706|dbj|GAA88313.1| DNA-directed RNA polymerase III largest subunit [Aspergillus kawachii
            IFO 4308]
          Length = 2146

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 310/999 (31%), Positives = 467/999 (46%), Gaps = 177/999 (17%)

Query: 265  ISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQAN 320
            ISD   +  G   K+A   +F    +  PP+  R PS G D+   E   T  L  ++Q+N
Sbjct: 943  ISDTDCELLGLNPKEARPEMFLWQFIPAPPVCIR-PSVGQDAASTEDDLTAKLGDIVQSN 1001

Query: 321  IYLANAYVN-QPDNAKVIVARWMNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGL 377
            I L NA +   P    +    +M LQ +V +  D  G N A       G  Q L+ K+G 
Sbjct: 1002 INLKNALLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRLKGKQGR 1061

Query: 378  FRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIING 437
            FR  L GKRV+++ R+VISPDP L V+E+ +P   A  +TYPE VT +N  KL+  + NG
Sbjct: 1062 FRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNG 1121

Query: 438  AEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
             +  PGA + + K  T +L         I  +L                  EG ++ RH+
Sbjct: 1122 TKKWPGANYIMKKGQTFKLFLKYGNLNMIADQLQ-----------------EGDVIERHI 1164

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            +DGD+VL NRQP+LHK SI++H  +V +  +T R++   C+ YNADFDGDEMN+H PQ E
Sbjct: 1165 EDGDIVLFNRQPSLHKLSILSHFAKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTE 1223

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL-LYSSG 616
             +RAEA  ++   N    P NG+P+ S IQD I +A +L+ KD F +R  F Q+ LY  G
Sbjct: 1224 EARAEAMELMGVKNNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLG 1283

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
              +     F   P                 PA+ KP+ LWTGKQV   +L    +  P  
Sbjct: 1284 PQTR----FDLPP-----------------PAVLKPQMLWTGKQVFN-ILMRPNKDDPVL 1321

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
            V                N D      K  K                     +G P     
Sbjct: 1322 V----------------NLDAACREFKAPK---------------------DGTP----- 1339

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSA 793
                  ++ +  +  L+I  ++++ GV+DK+         + + +   YG   A   ++ 
Sbjct: 1340 ------RDLDPKDAWLVIRNSEVMCGVMDKSTIGSGKKDNVFYIMLRDYGPVAAAEGMNR 1393

Query: 794  LSRLFTVFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGA 849
            LSRL   +    GF+ G+ D+     +L+ K    +      +E+  +     LE   G 
Sbjct: 1394 LSRLSARWFTNMGFSIGITDVYPSEKLLRSKHNLVETAYAQCDEVIAKYKAGTLEKYPGC 1453

Query: 850  -EIDPI--KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
             E+  +  +L   + K  +  GD  +A        QL+K+ S  +               
Sbjct: 1454 DELQTMENQLSGILSKVRQQAGDECIA--------QLSKYNSPLI--------------- 1490

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
                 M TSG+KGS +N  Q+ + +GQQ + G+RV      +TLP F      P + GF+
Sbjct: 1491 -----MATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFV 1545

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
             + F +GL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++ 
Sbjct: 1546 RNSFFSGLEPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRNSS 1605

Query: 1027 GSIVQFCYGEDGVD-----------------VHQTSFISKFDA--------LAARERGRG 1061
             +IVQF YG+D +D                 +H  S   K D         +   E    
Sbjct: 1606 AAIVQFQYGDDKLDPLDMEGKAKPVHFDRTFIHAESTTYKNDERSLLPAEIMEICEEMLS 1665

Query: 1062 RGRNKFCDK---GSHTFVMGRNQEMI--YKKCSGQLDASNAYIMELPDAL------KDNA 1110
            + R+K   K   G+    M R+   +  ++     L++   Y+    D L       D  
Sbjct: 1666 KERSKLVRKDLMGNELGYMDRSDHGVDQFESARDFLESIQQYVATKADKLISRGGDIDPN 1725

Query: 1111 EKFADKFLSN-----EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNT 1165
            ++ + K L++     E   + F+     K+  +  + G  VG + +QS+GEP TQMTL T
Sbjct: 1726 DERSQKGLNHTGKLTERTLRTFISSCLMKYKKAQVEAGHAVGAVGAQSIGEPGTQMTLKT 1785

Query: 1166 FHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            FH AG   M++T G+PR++EI+  ASK+I TPV+ C L+
Sbjct: 1786 FHFAGVAGMSITQGVPRIKEIIN-ASKEISTPVVACELV 1823



 Score = 49.3 bits (116), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C+TCG    +C GHFGH+ LV+P ++   F  + T+L+ +C  C      +A RR   + 
Sbjct: 774 CQTCGGALQVCNGHFGHVRLVLPAFHVGYFKRVITILQEVCKECSRILLPEADRRAYLRE 833

Query: 58  VRK 60
           +R+
Sbjct: 834 MRR 836


>gi|67524109|ref|XP_660116.1| hypothetical protein AN2512.2 [Aspergillus nidulans FGSC A4]
 gi|40744841|gb|EAA63997.1| hypothetical protein AN2512.2 [Aspergillus nidulans FGSC A4]
          Length = 2092

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 315/1003 (31%), Positives = 472/1003 (47%), Gaps = 185/1003 (18%)

Query: 265  ISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPSKGGD-SVMEHPQTVLLSKVLQAN 320
            ISD   +  G   K+A   +F    +  PP+  R PS G D S  E   T  L  ++Q+N
Sbjct: 894  ISDSDCELLGLDPKEARPEMFLWQFIPAPPVCIR-PSVGQDASSTEDDLTAKLGDIVQSN 952

Query: 321  IYLANAYVN-QPDNAKVIVARWMNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGL 377
            I L NA +   P    +    +M LQ +V +  D  G N A       G  Q L+ K+G 
Sbjct: 953  INLKNALLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRLKGKQGR 1012

Query: 378  FRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIING 437
            FR  L GKRV+++ R+VISPDP L V+E+ +P   A  +TYPE V  +N  KL+  + NG
Sbjct: 1013 FRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVNRYNKEKLQQCVRNG 1072

Query: 438  AEIHPGATHYLDK---LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVY 494
             +  PGA + + K   L TM    N K                      +D   EG +V 
Sbjct: 1073 QKKWPGANYIIKKGNPLKTMLKYGNLKFI--------------------ADQLQEGDIVE 1112

Query: 495  RHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFP 554
            RH++DGD+VL NRQP+LHK SI++H  +V +  +T R++   C+ YNADFDGDEMN+H P
Sbjct: 1113 RHIEDGDIVLFNRQPSLHKLSILSHFAKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVP 1171

Query: 555  QDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL-LY 613
            Q E +RAEA  ++   N    P NG+P+   IQD I +A LL+ KD F +R  F Q+ LY
Sbjct: 1172 QTEEARAEAMELMGVKNNLATPKNGEPIIGAIQDFISAAYLLSSKDNFFDRRSFTQICLY 1231

Query: 614  SSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGR 673
              G  +     F   P                 PA++KP+ LWTGKQV   +L    +  
Sbjct: 1232 MLGPQT----RFDLPP-----------------PAVFKPQMLWTGKQVFN-ILMRPNKDD 1269

Query: 674  PPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGE 733
            P  V                N D    + K  KG                          
Sbjct: 1270 PVLV----------------NLDAACKQFKPPKG-------------------------- 1287

Query: 734  EKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTL 790
                  N+ ++ + ++  L++  ++++ GV+DK+         + + +   +G   A   
Sbjct: 1288 ------NQPRDLDPNDSWLVVRNSEVMCGVMDKSTVGSGKKDNVFYIMLRDFGPAAAAEG 1341

Query: 791  LSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGS-----EEIGKRVHLEALEL 845
            ++ LS+L   +    GF+ G+ D+    D+  + KN L  +     +E+  +     LE 
Sbjct: 1342 MNRLSKLSARWFSNMGFSIGITDVYP-SDRLVQSKNDLVEAAYAQCDEVIAKYKAGTLEK 1400

Query: 846  EDGA-EIDPI--KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLK 902
              G  E+  +  +L   + K  +  GD  +A        QL+K+ S  +           
Sbjct: 1401 YPGCDELQTMENQLSGILSKVRQQAGDECIA--------QLSKYNSPLI----------- 1441

Query: 903  PTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRA 962
                     M TSG+KGS +N  Q+ + +GQQ + G+RV      +TLP F      P +
Sbjct: 1442 ---------MATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPS 1492

Query: 963  GGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSV 1022
             GF+ + F +GL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +V
Sbjct: 1493 KGFVRNSFFSGLLPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTGYDDTV 1552

Query: 1023 RDADGSIVQFCYGEDGVD----------VH-QTSFI--------------SKFDALAARE 1057
            R++   IVQF YG+D +D          VH   +FI              S  + +   E
Sbjct: 1553 RNSSQGIVQFQYGDDKLDPVDMEGKAKPVHFDRTFIHAETTTYKNEERSLSPAEIMEVCE 1612

Query: 1058 RGRGRGRNKFCD---KGSHTFVMGRNQEMI--YKKCSGQLDASNAYIMELPDAL------ 1106
                + R K       G+    M R+   +  ++     LD+   Y+    D L      
Sbjct: 1613 EMLSKERAKLARYDLMGAELDYMDRSDHGVDQFESARDFLDSIQQYVQTKADKLISRGGD 1672

Query: 1107 KDNAEKFADKFLSN-----EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQM 1161
             D +++   K L++     E   + F+     K+  +  +PG  VG + +QS+GEP TQM
Sbjct: 1673 SDPSDERTIKGLNHTGKLTERTLRTFIAECLMKYKKAQVEPGHAVGAVGAQSIGEPGTQM 1732

Query: 1162 TLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            TL TFH AG   M++T G+PR++EI+  ASK+I TPVI+C L+
Sbjct: 1733 TLKTFHFAGVAGMSITQGVPRIKEIIN-ASKEISTPVISCELV 1774



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C+TCG    +C GHFGH+ LV+P ++   F  + ++L+ IC  C H    +A RR   + 
Sbjct: 725 CQTCGGALQVCNGHFGHVRLVLPAFHVGYFKRVISILQEICKECSHILLPEAERRAFLRE 784

Query: 58  VRKLEL 63
           +R+  L
Sbjct: 785 MRRPRL 790


>gi|350640058|gb|EHA28411.1| hypothetical protein ASPNIDRAFT_128642 [Aspergillus niger ATCC 1015]
          Length = 2063

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 310/999 (31%), Positives = 468/999 (46%), Gaps = 177/999 (17%)

Query: 265  ISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQAN 320
            ISD   +  G   K+A   +F    +  PP+  R PS G D+   E   T  L  ++Q+N
Sbjct: 860  ISDTDCELLGLNPKEARPEMFLWQFIPAPPVCIR-PSVGQDAASTEDDLTAKLGDIVQSN 918

Query: 321  IYLANAYVN-QPDNAKVIVARWMNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGL 377
            I L NA +   P    +    +M LQ +V +  D  G N A       G  Q L+ K+G 
Sbjct: 919  INLKNALLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRLKGKQGR 978

Query: 378  FRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIING 437
            FR  L GKRV+++ R+VISPDP L V+E+ +P   A  +TYPE VT +N  KL+  + NG
Sbjct: 979  FRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNG 1038

Query: 438  AEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
             +  PGA + + K  T +L         I  +L                  EG ++ RH+
Sbjct: 1039 TKKWPGANYIMKKGQTFKLFLKYGNLNMIADQLQ-----------------EGDVIERHI 1081

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            +DGD+VL NRQP+LHK SI++H  +V +  +T R++   C+ YNADFDGDEMN+H PQ E
Sbjct: 1082 EDGDIVLFNRQPSLHKLSILSHFAKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTE 1140

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL-LYSSG 616
             +RAEA  ++   N    P NG+P+ S IQD I +A +L+ KD F +R  F Q+ LY  G
Sbjct: 1141 EARAEAMELMGVKNNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLG 1200

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
              +     F   P                 PA+ KP+ LWTGKQV   +L    +  P  
Sbjct: 1201 PQTR----FDLPP-----------------PAVLKPQMLWTGKQVFN-ILMRPNKDDPVL 1238

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
            V                N D    + K  K                     +G P     
Sbjct: 1239 V----------------NLDAACRQFKAPK---------------------DGTP----- 1256

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSA 793
                  ++ +  +  L+I  ++++ GV+DK+         + + +   YG   A   ++ 
Sbjct: 1257 ------RDLDPKDSWLVIRNSEVMCGVMDKSTIGSGKKDNVFYIMLRDYGPVAAAEGMNR 1310

Query: 794  LSRLFTVFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGA 849
            LSRL   +    GF+ G+ D+     +L+ K    +      +E+  +     LE   G 
Sbjct: 1311 LSRLSARWFTNMGFSIGITDVYPSEKLLRSKHDLVETAYAQCDEVIAKYKAGTLEKYPGC 1370

Query: 850  -EIDPI--KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
             E+  +  +L   + K  +  GD  +A        QL+K+ S  +               
Sbjct: 1371 DELQTMENQLSGILSKVRQQAGDECIA--------QLSKYNSPLI--------------- 1407

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
                 M TSG+KGS +N  Q+ + +GQQ + G+RV      +TLP F      P + GF+
Sbjct: 1408 -----MATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFV 1462

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
             + F +GL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++ 
Sbjct: 1463 RNSFFSGLEPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRNSS 1522

Query: 1027 GSIVQFCYGEDGVD-----------------VHQTSFISKFDA--------LAARERGRG 1061
             +IVQF YG+D +D                 +H  S   K D         +   E    
Sbjct: 1523 AAIVQFQYGDDKLDPLDMEGKAKPVHFDRTFIHAESTTYKNDERSLLPAEIMEICEEMLS 1582

Query: 1062 RGRNKFCDK---GSHTFVMGRNQEMI--YKKCSGQLDASNAYIMELPDAL------KDNA 1110
            + R+K   K   G+    M R+   +  ++     L++   Y+    D L       D  
Sbjct: 1583 KERSKLVRKDLMGNELGYMDRSDHGVDQFESARDFLESIQQYVATKADKLISRGGDIDPN 1642

Query: 1111 EKFADKFLSN-----EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNT 1165
            ++ + K L++     E   + F+     K+  +  + G  VG + +QS+GEP TQMTL T
Sbjct: 1643 DERSQKGLNHTGKLTERTLRTFISSCLMKYKKAQVEAGHAVGAVGAQSIGEPGTQMTLKT 1702

Query: 1166 FHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            FH AG   M++T G+PR++EI+  ASK+I TPV+ C L+
Sbjct: 1703 FHFAGVAGMSITQGVPRIKEIIN-ASKEISTPVVACELV 1740



 Score = 50.1 bits (118), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C+TCG    +C GHFGH+ LV+P ++   F  + T+L+ +C  C      +A RR   + 
Sbjct: 691 CQTCGGTLQICNGHFGHVRLVLPAFHVGYFKRVITILQEVCKECSRILLPEADRRAYLRE 750

Query: 58  VRK 60
           +R+
Sbjct: 751 MRR 753


>gi|429851154|gb|ELA26368.1| DNA-directed RNA polymerase iii largest [Colletotrichum
            gloeosporioides Nara gc5]
          Length = 1456

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 303/1017 (29%), Positives = 480/1017 (47%), Gaps = 185/1017 (18%)

Query: 257  NEFELCSFISDMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVM-EHPQTVLLS 314
            N F++ S  +D +  G     G    F+   L  PP+  R PS   D+   E   T  L+
Sbjct: 238  NLFKMIS-PTDCELLGLDPAEGRPEMFIWQFLPAPPVCIR-PSVAQDNASNEDDITTKLA 295

Query: 315  KVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD----GKNAAGQRDMASGICQL 370
             ++  +  + +A + +    + I+ +W  LQ  V +  +    G    G      G CQ 
Sbjct: 296  DIVWVSGMIRSA-LQKGSPIQTIMEQWEYLQLQVAMYVNSDVPGLQQPGFGKAVRGFCQR 354

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ K+G FR  L GKRV+++ R+VISPDP L ++++ +P   A  LTYPERV+ +N+ KL
Sbjct: 355  LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPQLVAKNLTYPERVSDYNIKKL 414

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
            ++ + NG  I PGA   +            K+ +  G     +R  + Q  K  D     
Sbjct: 415  KECVRNGPNIWPGAQQVIKNDDG-----GYKISLRFG-----NRNQVAQDLKIGD----- 459

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
             +V RHL+D D+VL NRQP+LHK SIM+H+V+V +  +T R++   C  YNADFDGDEMN
Sbjct: 460  -VVERHLEDNDIVLFNRQPSLHKLSIMSHLVKV-RPWRTFRLNECVCGPYNADFDGDEMN 517

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E +RAEA N++   +    P NG+P+ +  QD I +A LL+ KD F +R  F  
Sbjct: 518  LHVPQTEEARAEAINLMGVKHNLATPKNGEPVIAATQDFITAAYLLSGKDRFFDRKTFTY 577

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            +                     ++      ++ P  PAI KP+ LWTGKQV + ++    
Sbjct: 578  ICM------------------HMMDGNVHLDLPP--PAILKPQALWTGKQVFSIMM---- 613

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
              RP                     +K S  K N   K  +                + +
Sbjct: 614  --RP---------------------NKDSPVKVNLDAKCRE---------------YKAR 635

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTA 787
            PG+  + + N        +  L++  ++++ G +DK+         + + +   +G + A
Sbjct: 636  PGQCPDMDPN--------DGWLVVRNSEVMCGRMDKSTVGSGKKDSVFYVILRDFGPDAA 687

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDL----LILKDKERERKNHLHGSEEIGKRVHLEAL 843
               ++ L++L    L   GF+ GV D+    L+L+ K +  ++     +E+  +     L
Sbjct: 688  VVTMNRLAKLCARHLTNRGFSIGVGDVFPTQLLLEKKSKMIQDANKDVDELIDKYKKGKL 747

Query: 844  ELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKP 903
            E   G       ++  +E ++ G            + S++     S  I  L        
Sbjct: 748  EKATGCS-----MEETLENSISG------------LLSKVRTQAGSHCIETL-------- 782

Query: 904  TGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAG 963
            +  N   +M  SG+KGS++N  Q+ + +GQQ + GKRV      +TLP FH     P + 
Sbjct: 783  SRNNAPLVMAKSGSKGSEINVAQMVALVGQQIIGGKRVADGFQDRTLPHFHKNAPQPPSK 842

Query: 964  GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
            GF+ + F +GL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR
Sbjct: 843  GFVANSFYSGLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVR 902

Query: 1024 DADGSIVQFCYGEDGVD-------VHQTSFISKF------------------------DA 1052
             + G IVQF +G D +D           +F   F                        D+
Sbjct: 903  TSGGGIVQFQFGADKLDPVDMEASAKPVNFDRTFSHAENLTWNNDEAALLPDEIVKYCDS 962

Query: 1053 LAARERGR--------------GRGRNKFCD---------KGSHTFVMGR-NQEMIYKKC 1088
            + + ER R                  +KF D         +   ++V GR N+     + 
Sbjct: 963  MLSVERARYPRKALVGDDVLDYDNEEDKFTDEHEGARDFLRSLESYVAGRANKLRRVMEL 1022

Query: 1089 SGQLDASNAYIMELPDALKDNAEKFADKFLS-NEMAKQDFLKLVKHKFVLSLAQPGEPVG 1147
            +G    + +  +++ ++     + FADK    +E   + F++L   K+  +  +PG  VG
Sbjct: 1023 TGLTAGAESMEVDVDESEMKAKKAFADKVAKVSETTLRMFIRLCLEKYKKAHVEPGHAVG 1082

Query: 1148 LLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
             + +QS+GEP TQMTL TFH AG   M++T G+PR++EI+  ASK I TPVITCPL+
Sbjct: 1083 AVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN-ASKTISTPVITCPLV 1138


>gi|328858469|gb|EGG07581.1| hypothetical protein MELLADRAFT_47986 [Melampsora larici-populina
            98AG31]
          Length = 1421

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 301/991 (30%), Positives = 449/991 (45%), Gaps = 153/991 (15%)

Query: 266  SDMQQQGFGKKAGH-SIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA 324
            SD +  G   + G    +    + VPP+  R       +  E   TV L++++  N  + 
Sbjct: 245  SDCELLGLDPEVGRPEEYIWQYIHVPPVCIRPSVTQEAATNEDDVTVKLTEMIFTNTLIK 304

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS----GICQLLEKKEGLFRQ 380
               V        I+ +W  LQ SV +  + +       M +    G CQ L+ K G FR 
Sbjct: 305  TGLVKGVPTQN-IMEQWEFLQLSVAMYINAELPGVPSQMGAKPIKGFCQRLKGKTGRFRG 363

Query: 381  KLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEI 440
             L GKRV+++ R+VI PDP L++ E+ +P   A  LTYPERVT  N+ +LR  I NG ++
Sbjct: 364  NLSGKRVDFSGRTVIGPDPNLSITEVAVPDRMAKVLTYPERVTAHNLDRLRQCIRNGPDV 423

Query: 441  HPGATHYLDKLSTMRLPPNKKMRISIGRKLD-TSRGAIVQPGKDSDNEFEGKMVYRHLQD 499
            HPGA + +   +    P          R L   +R  I      ++    G  V RHL D
Sbjct: 424  HPGANYLIASGA----PGTAGAATQFKRSLRFGNRNQI------ANTLRMGDTVERHLHD 473

Query: 500  GDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVS 559
            GDVVL NRQP+LHK SIM+H  ++ +  +TLR +   C+ YNADFDGDEMN+H PQ E +
Sbjct: 474  GDVVLFNRQPSLHKLSIMSHRAKI-RPWRTLRFNECVCTPYNADFDGDEMNLHVPQTEEA 532

Query: 560  RAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSS 619
            R EA  ++N     V P NG+P+ +  QD I ++ LL++KD F +R +F Q L       
Sbjct: 533  RTEATELMNVKYNLVTPRNGEPIIAATQDFITASYLLSRKDNFYDRQQFTQAL------- 585

Query: 620  SGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVE 679
                        + L   +    LP  P IWKP  LWTGKQV   +              
Sbjct: 586  ------------QYLSDATLHIDLP-PPVIWKPIRLWTGKQVFNVL-------------- 618

Query: 680  RGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEK 739
                                               M  +K+   K  +E K     +A  
Sbjct: 619  -----------------------------------MRPNKASPVKVNIEAKCATHHKALP 643

Query: 740  NKSKEKELSEEKLLIYKNDLVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSR 796
                +   ++  L+I  ++++ GV+DKA         +   +   YG + A   ++ L++
Sbjct: 644  EFLPDMSPNDGWLVIQNSEIMCGVVDKAIVGGGKKDSIFAVINRDYGPDEAVKAMNRLAK 703

Query: 797  LFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKL 856
            +   +L   GF+ GV D+                    G+R+  +   L   A     K 
Sbjct: 704  VSARWLANMGFSIGVGDV------------------TPGERLSTQKESLVAKA----YKE 741

Query: 857  KSEIEKAMRGGGDAAVAYFDMKMTSQ-LNKHTSSSVINELLSEGLLKPTGKNWISLMTTS 915
             +++ K+ + G    +   D   T + +     S V + L    + + T  N   +M T 
Sbjct: 742  TNDLIKSSKAGQLQTLPGRDQDQTLEAMISGVLSKVRDSLGVICMAELTRHNAPLIMATC 801

Query: 916  GAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLR 975
            G+KGS +N  Q+ + +GQQ + G R+P     ++LP FH     P A GF+ + F +GLR
Sbjct: 802  GSKGSTINVAQMVACVGQQIISGNRIPDGFQDRSLPHFHKKAKEPPAKGFVRNSFHSGLR 861

Query: 976  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYG 1035
              E+ FH ++GREGLVDTAVKT+ +GY+QR L+K LE L   YD SVR++ G +VQF YG
Sbjct: 862  ATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLSTRYDDSVRNSVGGVVQFTYG 921

Query: 1036 EDGVDV-----------------HQTSFISKFDALA--------------ARERGRGRGR 1064
            +DG+D                  H  + IS  D                 A  R      
Sbjct: 922  DDGLDPTYLEGDGEPVEFARTWRHSKATISHLDGRGLYPYEIVQTVAKRLAEPRFAKACT 981

Query: 1065 NKFCDKGSHTFVMGR--NQEMIYKKCSG-----QLDASNAYIMELPDALKDNAEKFADKF 1117
             +F D     F+          Y+   G     ++D       +L   +  N +  A+K 
Sbjct: 982  TRFTD-SVLNFITNSVAKPAATYRASYGMYPAMEMDGDWDEETDLSAGVTGNKKIVANKT 1040

Query: 1118 LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVT 1177
                     FL     K+V +  +PG  VG + +QS+GEP TQMTL TFH AG   MN+T
Sbjct: 1041 QVTLKQIDTFLDYCWVKYVKAKVEPGTAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNIT 1100

Query: 1178 LGIPRLQEILTIASKDIKTPVITCPLLVGKT 1208
            LG+PR++EI+  ASK I  P+I  PL+  ++
Sbjct: 1101 LGVPRIKEIIN-ASKVINGPIINAPLVANQS 1130


>gi|168009054|ref|XP_001757221.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691719|gb|EDQ78080.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1397

 Score =  391 bits (1005), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 299/977 (30%), Positives = 447/977 (45%), Gaps = 184/977 (18%)

Query: 287  VLVPPIKFRLPSKGGDSVM---EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMN 343
            ++VPP+  R PS   +S     E   TV L  +L  N  L    V Q   A+  +  W  
Sbjct: 262  LIVPPVAIR-PSVEMESAAGSNEDDITVRLLGILNCNNSLRTC-VEQGLAAEKTMETWEL 319

Query: 344  LQQSVNVLFDGKNAAGQRDMAS------GICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
            LQ  V+ L + +    + +  +      G  Q L+ K+G FR  L GKRV++  R+VISP
Sbjct: 320  LQSQVSQLINSETPVPRSEQPTSGKQPRGFVQRLKGKQGRFRGNLSGKRVDFTGRTVISP 379

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DP L + E+ +P   A  LTYPE+V+ +N+ KLR  IING   HPGA   +        P
Sbjct: 380  DPNLKITEVAVPLLMAQLLTYPEKVSRYNIDKLRGRIINGMTKHPGANFII-------FP 432

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIM 517
               K+ +  G   D  R A       ++ ++ G +V RHL+DGD+VL NRQP+LH+ SIM
Sbjct: 433  DGNKLYLKFG---DRRRYA-------AELKY-GDIVERHLEDGDIVLFNRQPSLHRMSIM 481

Query: 518  AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
            +H  R++   +TLR + + C+ YNADFDGDEMN+H PQ E +R EA  ++   N    P 
Sbjct: 482  SHRARIMPW-RTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVANNLCTPK 540

Query: 578  NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISR 637
            NG+ L +  QD + S+ L T+KDTF +R  F Q     G ++  +               
Sbjct: 541  NGEILVASTQDFLTSSYLFTRKDTFYDRATFTQACVYMGDAAENID-------------- 586

Query: 638  SEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADK 697
                 LP  P+I KP  LWTGKQ+ + ++    + R               F    + +K
Sbjct: 587  -----LPT-PSIIKPMELWTGKQLFSVLVRPNAKTR--------------VFVNLVSYEK 626

Query: 698  QSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN 757
              D+K N KG +  T+     ++    E++ G+ G+      NK                
Sbjct: 627  NYDKKAN-KGSMCPTDGYVYFRNS---ELICGQLGKATLGNGNKD--------------- 667

Query: 758  DLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLIL 817
                           GL   +   YG+  A   ++ L++L   ++  HGF+ G+DD+   
Sbjct: 668  ---------------GLFTVLLRDYGNEAAAVCMNRLAKLSARWIGNHGFSIGIDDVAPS 712

Query: 818  KDKERERKNHL-HGSEEIGKRVHLEA---LELEDGAEIDPIKLKSEIEKAMRGGGDAAVA 873
                RE++  +  G     + + L     LEL+ G                      A  
Sbjct: 713  DRLNREKEKQITKGYNACDQHIQLYKKGKLELQPGCN--------------------AAQ 752

Query: 874  YFDMKMTSQLNK--HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHL 931
              +  +T +LNK    + +V  + L         +N   +M+  G+KGS +N  Q+ + +
Sbjct: 753  TLESAVTGELNKIREAAGNVCKDELH-------WRNSPLIMSECGSKGSFINISQMVACV 805

Query: 932  GQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLV 991
            GQQ + GKR P     +TLP F   D  P+  GF+ + F +GL   E++FH M GREGLV
Sbjct: 806  GQQSVGGKRAPNGFIDRTLPHFPRHDRTPQGKGFVANSFYSGLSATEFFFHTMGGREGLV 865

Query: 992  DTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY-----------GEDGVD 1040
            DTAVKT+ +GY+ R L+K LE L   YD +VR++ G IVQ  Y           G+DG  
Sbjct: 866  DTAVKTAETGYMSRRLMKALEDLSAQYDGTVRNSSGGIVQLLYGDDGMDPVYMEGKDGAP 925

Query: 1041 VHQTSFISKFDALAARERGRG----------------------------RGRNKFCDKGS 1072
             +    + K  A        G                                KF D   
Sbjct: 926  FNLDRMLMKTKATCPSYGQLGLPPTEIEKLFNERLTKPDMTSETVGAFKTSLKKFMDSCI 985

Query: 1073 HTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMA---KQDFLK 1129
               +  R +  +   C+G  D +          L ++   +     S ++     Q FL 
Sbjct: 986  KDNISTRTKLGLPLDCNGGPDQT----------LLESTATYISGLTSRQLEICLLQVFLD 1035

Query: 1130 LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTI 1189
                ++ +   +PG  VG + +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  
Sbjct: 1036 TCIKRYHMKRVEPGAAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN- 1094

Query: 1190 ASKDIKTPVITCPLLVG 1206
            ASK+I TP+IT  L+ G
Sbjct: 1095 ASKNISTPIITAVLVSG 1111



 Score = 43.5 bits (101), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 30/61 (49%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC  +   CPGHFGH  L +PV++      +  +L+ IC  C        E +  +RK
Sbjct: 81  CSTCFGKLADCPGHFGHTKLEMPVFHIGYLKNILQILQCICKSCARILMPEEECKLILRK 140

Query: 61  L 61
           +
Sbjct: 141 M 141


>gi|380025198|ref|XP_003696364.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit RPC1-like, partial [Apis florea]
          Length = 1994

 Score =  391 bits (1005), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 317/1006 (31%), Positives = 474/1006 (47%), Gaps = 183/1006 (18%)

Query: 242  LLPSDVKDIIEKLWENEFEL------CSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFR 295
            L P +V+ I+EK+ EN+  L      C+   D+               L  + VPPI  R
Sbjct: 846  LNPLEVQSILEKIPENDIPLLMMNTECALPKDL--------------ILTRIPVPPICIR 891

Query: 296  LPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR--WMNLQQSVNV 350
             PS   D      E   T+ LS+++  N  +     ++   AKV +    W  LQ    +
Sbjct: 892  -PSVVSDIKAGTTEDHLTMKLSEIVFINDVIQK---HRQSGAKVQMYSEDWEFLQLHCAL 947

Query: 351  LFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNE 405
              + + +    +M       G+ Q L+ K+G FR  L GKRV+++ R+VISPDP L + +
Sbjct: 948  YINSEMSGIPLNMQPKKSGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLRIEQ 1007

Query: 406  IGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRIS 465
            +G+P + A  LTYPE+V P N+  +R  + NG +IHPGA       +  +    K +R  
Sbjct: 1008 VGVPIHVAKILTYPEKVNPSNIELMRKLVRNGPDIHPGANFIQQGKTQFK----KYLRYG 1063

Query: 466  IGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLK 525
                   +R  I Q     D ++ G +V RHL+D DVVL NRQP+LHK SIMAH  ++L 
Sbjct: 1064 -------NRQKIAQ-----DLQY-GDIVERHLRDDDVVLFNRQPSLHKLSIMAHKAKIL- 1109

Query: 526  GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSL 585
              +T R +   C+ YNADFDGDEMN+H PQ E +RAEA  ++   +  V P NG+ L + 
Sbjct: 1110 DHRTFRFNECVCTPYNADFDGDEMNLHVPQTEEARAEALVLMGNKSNLVTPRNGELLIAA 1169

Query: 586  IQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL 645
             QD I    LLT+KD FLN+ +  QL           G     P   + I+  E      
Sbjct: 1170 TQDFITGGYLLTQKDMFLNKTQASQL----------AGCLLAGPDITMSINLPE------ 1213

Query: 646  LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKND 705
             PAI KP  LWTGKQ  + +L                  P +    + N           
Sbjct: 1214 -PAILKPTTLWTGKQXFSLILK-----------------PNNTCNIKANL--------KT 1247

Query: 706  KGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVID 765
            KG+   TN                             +E  +++  ++I  ++L+ G +D
Sbjct: 1248 KGRAYTTN-----------------------------EELCINDSYVIIRNSELLAGSMD 1278

Query: 766  KAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL-----LIL 817
            K+     +   + + +   +G + A   +  L+R+ + FL   GF+ G+ D+     L+ 
Sbjct: 1279 KSTLGSGSKQNIFYILLRDWGEDIATIAMWRLARMASFFLMNRGFSIGIGDVTPGQGLLK 1338

Query: 818  KDKERERKNHLHGSEEIGKRVHLEALELEDGAEI-DPIKLKSEIEKAMRGGGDAAVAYFD 876
              +E     +   +E I         ++E+G  I  P   + E  +AM            
Sbjct: 1339 AKQELLNAGYSKCTEYIQ--------DMEEGRLICQPGCTEEETLEAMI----------- 1379

Query: 877  MKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
            +K  S +  H   + + E      L P+    I  M  SG+KGS +N  Q+ + +GQQ +
Sbjct: 1380 LKELSVIRDHAGKACLKE------LHPSNSPLI--MALSGSKGSFINISQMIACVGQQAI 1431

Query: 937  EGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVK 996
             G RVP     + LP F      P A GF+ + F +GL P E++FH M GREGLVDTAVK
Sbjct: 1432 SGHRVPNGFEDRALPHFERHSKIPAAKGFVENSFYSGLTPTEFFFHTMGGREGLVDTAVK 1491

Query: 997  TSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAAR 1056
            T+ +GY+QR L+K+LE L + YD +VR++ G IVQ  YG D +D    +++   D     
Sbjct: 1492 TAETGYMQRRLVKSLEDLCLHYDMTVRNSVGDIVQILYGGDALD---PTYMEGKDCPVDY 1548

Query: 1057 ERGRGRGRNKFCDKGSHTF----VMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEK 1112
            +R     R K   K   +     V+    E++  +    L  S  +  EL   LK  A K
Sbjct: 1549 KRILDHVRAKSPCKNEESLDGHSVIKATNELLNSEEYECL--SEEFKQELSTFLKTVARK 1606

Query: 1113 FA----DKFLSNEMAKQ----------DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPS 1158
             A    +  L+  +  Q          +F+   K K++ +  +PG  VG LA+QS+GEP 
Sbjct: 1607 IARLRHNAILNVPVILQLERLTVSQLVEFIHTCKEKYMRAKIEPGTAVGALAAQSIGEPG 1666

Query: 1159 TQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            TQMTL TFH AG   MN+T G+PR++EI+  AS  I TP+IT  L+
Sbjct: 1667 TQMTLKTFHFAGVASMNITQGVPRIKEIIN-ASPKISTPIITAALI 1711



 Score = 46.6 bits (109), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEK 56
           C +CG+    C GHFG+IDL +PV++   F  +  +L+ IC  C H   S  E++K
Sbjct: 697 CASCGKTLNECIGHFGYIDLELPVFHVGYFRSIIGILQTICKNCSHVMLS--EIDK 750


>gi|70998935|ref|XP_754189.1| DNA-directed RNA polymerase III largest subunit [Aspergillus
            fumigatus Af293]
 gi|66851826|gb|EAL92151.1| DNA-directed RNA polymerase III largest subunit, putative
            [Aspergillus fumigatus Af293]
 gi|159127207|gb|EDP52322.1| DNA-directed RNA polymerase III largest subunit, putative
            [Aspergillus fumigatus A1163]
          Length = 1453

 Score =  391 bits (1005), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 309/989 (31%), Positives = 464/989 (46%), Gaps = 180/989 (18%)

Query: 275  KKAGHSIFFLGVVLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQANIYLANAYVN-QPD 332
            K+A   +F    +  PP+  R PS G D+   E   T  L  ++Q+NI L NA +   P 
Sbjct: 260  KEARPEMFLWQFIPAPPVCIR-PSVGQDAASTEDDLTAKLGDIVQSNINLKNALMKGAPV 318

Query: 333  NAKVIVARWMNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYA 390
               V    +M LQ +V +  D  G N A       G  Q L+ K+G FR  L GKRV+++
Sbjct: 319  QTIVECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 378

Query: 391  CRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDK 450
             R+VISPDP L V+E+ +P   A  +TYPE VT +N  KL+  + NG +  PGA + + K
Sbjct: 379  GRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPGANYIIKK 438

Query: 451  LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPT 510
             S                KL    G +      +D   EG ++ RH++DGD+VL NRQP+
Sbjct: 439  GSDF--------------KLFLKYGNL---NMIADQIQEGDVIERHIEDGDIVLFNRQPS 481

Query: 511  LHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNAN 570
            LHK SI++H  +V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA  ++   
Sbjct: 482  LHKLSILSHFAKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVK 540

Query: 571  NQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL-LYSSGVSSSGLGSFTGKP 629
            N    P NG+P+ S IQD I +A +L+ KD F +R  F Q+ LY  G  +     F   P
Sbjct: 541  NNLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLGPET----RFDLPP 596

Query: 630  GQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFF 689
                             PA+ KP+ LWTGKQV   ++      RP               
Sbjct: 597  -----------------PAVLKPQMLWTGKQVFNILM------RP--------------- 618

Query: 690  KTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSE 749
                                +K + +  +     +E    K G  K+ + N        +
Sbjct: 619  --------------------NKDDPVLVNLDAACREFKPPKDGRPKDLDPN--------D 650

Query: 750  EKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHG 806
              L+I  ++++ GV+DKA         + + +   +G   A   ++ LS+L   +    G
Sbjct: 651  GWLVIRNSEVMCGVMDKATIGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSARWFTNMG 710

Query: 807  FTCGVDDL-----LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI-----KL 856
            F+ G+ D+     L+    E     +    E I K    +A  LE     D +     +L
Sbjct: 711  FSIGITDVYPSESLVRSKNELVEVAYAQCDEVIAK---YKAGTLEKYPGCDELQTMENQL 767

Query: 857  KSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSG 916
               + K  +  GD  +A        QL+K+ S  +                    M TSG
Sbjct: 768  SGILSKVRQQAGDECIA--------QLSKYNSPLI--------------------MATSG 799

Query: 917  AKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRP 976
            +KGS +N  Q+ + +GQQ + G+RV      +TLP F      P + GF+ + F +GL P
Sbjct: 800  SKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSFFSGLLP 859

Query: 977  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE 1036
             E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++  +IVQF YG+
Sbjct: 860  TEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSDAIVQFQYGD 919

Query: 1037 DGVD-----------------VHQTSFISKFDA--------LAARERGRGRGRNKFCDK- 1070
            D +D                 +H  S     D         +   E    + R K   + 
Sbjct: 920  DKLDPVDMEGKAKPVHFDRTFIHAESITYDNDERSLLPHEIMEVCEEMLSKERAKLVRED 979

Query: 1071 --GSHTFVMGRNQEMI--YKKCSGQLDASNAYIMELPDAL------KDNAEKFADKFLSN 1120
              G+    M R+   +  ++     L++   YI    D L       D +++ + K L++
Sbjct: 980  LLGNKLAYMDRSDHGVDQFESARDFLESIQQYISSKADKLISRGGDIDPSDERSQKGLNH 1039

Query: 1121 -----EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMN 1175
                 E   + F+     K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   M+
Sbjct: 1040 TGKLTEKTLRTFITSCLMKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMS 1099

Query: 1176 VTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            +T G+PR++EI+  ASK+I TPVI+C L+
Sbjct: 1100 ITQGVPRIKEIIN-ASKEISTPVISCDLV 1127



 Score = 49.3 bits (116), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C+TCG    +C GHFGH+ LV+P ++   F  + ++L+ IC  C      +A RR   + 
Sbjct: 78  CQTCGGSLQVCNGHFGHVRLVLPAFHVGYFKRVISILQEICKECSRILLPEAERRAFLRE 137

Query: 58  VRK 60
           +R+
Sbjct: 138 MRR 140


>gi|259487939|tpe|CBF87003.1| TPA: hypothetical protein similar to RNA polymerase III (Broad)
            [Aspergillus nidulans FGSC A4]
          Length = 1445

 Score =  391 bits (1005), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 311/990 (31%), Positives = 467/990 (47%), Gaps = 182/990 (18%)

Query: 275  KKAGHSIFFLGVVLVPPIKFRLPSKGGD-SVMEHPQTVLLSKVLQANIYLANAYVN-QPD 332
            K+A   +F    +  PP+  R PS G D S  E   T  L  ++Q+NI L NA +   P 
Sbjct: 260  KEARPEMFLWQFIPAPPVCIR-PSVGQDASSTEDDLTAKLGDIVQSNINLKNALLKGAPV 318

Query: 333  NAKVIVARWMNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYA 390
               +    +M LQ +V +  D  G N A       G  Q L+ K+G FR  L GKRV+++
Sbjct: 319  QTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 378

Query: 391  CRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDK 450
             R+VISPDP L V+E+ +P   A  +TYPE V  +N  KL+  + NG +  PGA + + K
Sbjct: 379  GRTVISPDPNLRVDEVAVPELVAKNMTYPEVVNRYNKEKLQQCVRNGQKKWPGANYIIKK 438

Query: 451  ---LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNR 507
               L TM    N K                      +D   EG +V RH++DGD+VL NR
Sbjct: 439  GNPLKTMLKYGNLKFI--------------------ADQLQEGDIVERHIEDGDIVLFNR 478

Query: 508  QPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIV 567
            QP+LHK SI++H  +V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA  ++
Sbjct: 479  QPSLHKLSILSHFAKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELM 537

Query: 568  NANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL-LYSSGVSSSGLGSFT 626
               N    P NG+P+   IQD I +A LL+ KD F +R  F Q+ LY  G  +     F 
Sbjct: 538  GVKNNLATPKNGEPIIGAIQDFISAAYLLSSKDNFFDRRSFTQICLYMLGPQT----RFD 593

Query: 627  GKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQ 686
              P                 PA++KP+ LWTGKQV   +L    +  P  V         
Sbjct: 594  LPP-----------------PAVFKPQMLWTGKQVFN-ILMRPNKDDPVLV--------- 626

Query: 687  DFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKE 746
                   N D    + K  KG                                N+ ++ +
Sbjct: 627  -------NLDAACKQFKPPKG--------------------------------NQPRDLD 647

Query: 747  LSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQ 803
             ++  L++  ++++ GV+DK+         + + +   +G   A   ++ LS+L   +  
Sbjct: 648  PNDSWLVVRNSEVMCGVMDKSTVGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSARWFS 707

Query: 804  MHGFTCGVDDLLILKDKERERKNHLHGS-----EEIGKRVHLEALELEDGA-EIDPI--K 855
              GF+ G+ D+    D+  + KN L  +     +E+  +     LE   G  E+  +  +
Sbjct: 708  NMGFSIGITDVYP-SDRLVQSKNDLVEAAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQ 766

Query: 856  LKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTS 915
            L   + K  +  GD  +A        QL+K+ S  +                    M TS
Sbjct: 767  LSGILSKVRQQAGDECIA--------QLSKYNSPLI--------------------MATS 798

Query: 916  GAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLR 975
            G+KGS +N  Q+ + +GQQ + G+RV      +TLP F      P + GF+ + F +GL 
Sbjct: 799  GSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSFFSGLL 858

Query: 976  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYG 1035
            P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++   IVQF YG
Sbjct: 859  PYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTGYDDTVRNSSQGIVQFQYG 918

Query: 1036 EDGVD----------VH-QTSFI--------------SKFDALAARERGRGRGRNKFCD- 1069
            +D +D          VH   +FI              S  + +   E    + R K    
Sbjct: 919  DDKLDPVDMEGKAKPVHFDRTFIHAETTTYKNEERSLSPAEIMEVCEEMLSKERAKLARY 978

Query: 1070 --KGSHTFVMGRNQEMI--YKKCSGQLDASNAYIMELPDAL------KDNAEKFADKFLS 1119
               G+    M R+   +  ++     LD+   Y+    D L       D +++   K L+
Sbjct: 979  DLMGAELDYMDRSDHGVDQFESARDFLDSIQQYVQTKADKLISRGGDSDPSDERTIKGLN 1038

Query: 1120 N-----EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEM 1174
            +     E   + F+     K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   M
Sbjct: 1039 HTGKLTERTLRTFIAECLMKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGM 1098

Query: 1175 NVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            ++T G+PR++EI+  ASK+I TPVI+C L+
Sbjct: 1099 SITQGVPRIKEIIN-ASKEISTPVISCELV 1127



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C+TCG    +C GHFGH+ LV+P ++   F  + ++L+ IC  C H    +A RR   + 
Sbjct: 78  CQTCGGALQVCNGHFGHVRLVLPAFHVGYFKRVISILQEICKECSHILLPEAERRAFLRE 137

Query: 58  VRKLEL 63
           +R+  L
Sbjct: 138 MRRPRL 143


>gi|451993939|gb|EMD86411.1| hypothetical protein COCHEDRAFT_1186563 [Cochliobolus heterostrophus
            C5]
          Length = 1473

 Score =  391 bits (1004), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 323/1035 (31%), Positives = 496/1035 (47%), Gaps = 185/1035 (17%)

Query: 244  PSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS---KG 300
            P  V ++ +K+   + EL + I +         A   +     + VPP+  R PS   +G
Sbjct: 237  PLRVLNLFKKISPEDCELLAMIPE--------DARPEMLIWEYMPVPPVALR-PSVMQEG 287

Query: 301  G---DSVMEHPQTVL-LSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD--- 353
            G   D V      +  +S +++A   LA  +  Q     +++ +W  LQ  + +  +   
Sbjct: 288  GATEDDVTNKIGDICHISSIIRAG--LARGFPLQ-----ILMEQWDFLQLQIAMYINSDA 340

Query: 354  -GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYF 412
             G    G +    G  Q L+ K G FRQ L GKRV+++ R+VI PDP L+++E+ +P   
Sbjct: 341  PGLKQQGLQKTMRGFSQRLKGKGGRFRQNLSGKRVDFSGRTVIGPDPNLSIDEVAVPERI 400

Query: 413  ALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK---KMRISIGRK 469
            A  LTYPE+VT +N+ KLR  + NG+  +PGA + LD        PNK   K+ +    +
Sbjct: 401  AKNLTYPEKVTRYNIDKLRRLVRNGSNKYPGANYILDDQG-----PNKDRGKISLIALSR 455

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
             DT +G  ++    S     G +V RH++DGD+VL NRQP+LHK SI++H  +V +  +T
Sbjct: 456  FDT-KGERLEGA--SKRLKIGDIVERHIEDGDIVLFNRQPSLHKLSILSHRAKV-RPWRT 511

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++   C+ YNADFDGDEMN+H PQ E +R EA  ++        P NG P+ + IQD 
Sbjct: 512  FRLNECVCNPYNADFDGDEMNLHVPQTEEARTEATELMGVKYNLATPKNGTPIIAAIQDF 571

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            I +A LL+ K+ F +R  FCQ++       +G G+F    G+R  I     E+ P  P +
Sbjct: 572  ITAAYLLSNKNNFFDRRTFCQIV---NYMFNGEGAFDPDTGKRHPI-----EIPP--PVV 621

Query: 650  WKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKL 709
             KP+ LWTGKQV   ++    + R    +E   K     FK     D+  D  +ND    
Sbjct: 622  LKPQALWTGKQVFNLLMRPYKKCRVLVNLEAACKQ----FKN--TPDQPPDLNENDA--- 672

Query: 710  SKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF 769
                                                      L+I  ++++ GV+DKA  
Sbjct: 673  -----------------------------------------YLVIRNSEVMCGVMDKATV 691

Query: 770  AD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKN 826
             D     + + +   +G + A   ++ LS+L   +L  +GF+ G+ D+   +   +++++
Sbjct: 692  GDGKKDSVFYVMMRDFGPDHAVQGMNRLSKLSARWLSNNGFSLGISDVTPGEKLNKKKQD 751

Query: 827  HLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKH 886
             +   E   K   L     E   + DP   + +  +   GG  + V            + 
Sbjct: 752  LVQ--EAYAKCDKLIKDFKEGKLQRDPGCDEEQTMENRIGGILSGV------------RQ 797

Query: 887  TSSSVINELLSEGLLKPTGKNWIS--LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRM 944
             +  +  E LS          W S  LM   G+KGS +N  Q+ + +GQQ + G RV   
Sbjct: 798  AAGDICFEELSR---------WNSPLLMAKCGSKGSNINVSQMVASVGQQMIGGARVADG 848

Query: 945  VSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQ 1004
               +TLP F      P + GF+ + F +GL P E+ FH M+GREGLVDTAVKT+ +GY+ 
Sbjct: 849  FHHRTLPHFPKAARQPASKGFVSNSFFSGLTPSEFIFHAMSGREGLVDTAVKTAETGYMS 908

Query: 1005 RCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD----------VH-----QTSFISK 1049
            R L+K+LE L   YD +VR++ G++VQF YG+D +D          VH       +  S 
Sbjct: 909  RRLMKSLEDLSAQYDDTVRNSSGTVVQFQYGDDNLDPVDMEGKAKPVHFDRTFSHAVTST 968

Query: 1050 FDALAA-------RERGRGR---GRNKF----------------CDKG-----SHTFVMG 1078
            +D   +       RE    R    RNK+                 D+G     S    + 
Sbjct: 969  WDNSESSLTPQEVREYTEARLNAQRNKYPRYALDGVTQLEYRDQTDRGIDQKESMRDFLD 1028

Query: 1079 RNQEMIYKKCSGQLDASNAYI-MELPDALKD------NAEKF--ADKFLS-NEMAKQDFL 1128
              Q+ ++KK   +L+ + AY+ +  P+  KD      +AEK+  AD     +E A   F+
Sbjct: 1029 TVQDYVFKKAQ-KLETTLAYLGIVQPNDRKDKKQSAADAEKYSLADGIAKISERALDTFI 1087

Query: 1129 KLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILT 1188
             L   K+  S  QPG  VG + +QS+GEP TQMTL TFH AG   M++T G+PR++EI+ 
Sbjct: 1088 TLCLTKYHRSRVQPGHAVGAIGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN 1147

Query: 1189 IASKDIKTPVITCPL 1203
             AS  I TPVI C L
Sbjct: 1148 -ASSTISTPVIACEL 1161



 Score = 41.2 bits (95), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 23/44 (52%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TCG+    C GHFGHI L +P ++      +  +L  IC  C
Sbjct: 78  CATCGEGLDTCNGHFGHIKLALPAFHVGYLKHIIEVLNCICKDC 121


>gi|344229980|gb|EGV61865.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Candida
            tenuis ATCC 10573]
          Length = 1453

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 291/985 (29%), Positives = 466/985 (47%), Gaps = 180/985 (18%)

Query: 286  VVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANI---YLANAYVNQPDNAKVIVARWM 342
            V + P +     S   D  ++  + V  S +++A I      N  + Q D  ++ VA ++
Sbjct: 265  VCIRPSVMMDAQSNEDDLTVKLTEIVWTSSLIKAGIDKGISINNLMEQWDYLQLSVAMYI 324

Query: 343  NLQQSVNVLFDGKNAAGQRDM-ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYL 401
            N   +   L     +  +      G CQ L+ K+G FR  L GKRV+++ R+VISPDP L
Sbjct: 325  NSDAANPALMPSAGSGSKSTKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNL 384

Query: 402  AVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKK 461
             ++E+ +P   A  LTYPE+ T +N +KL+  I++G ++HPGA + L +        N K
Sbjct: 385  KIDEVAVPDRVAKILTYPEKCTRYNRIKLQKLILSGPDVHPGANYVLKQ------NENTK 438

Query: 462  MRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVV 521
              +  G ++  ++           N   G +V RH++DGDVVL NRQP+LH+ SI++H  
Sbjct: 439  RNLRFGDRVKIAK-----------NLHIGDVVERHIEDGDVVLFNRQPSLHRLSILSHYA 487

Query: 522  RVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDP 581
            ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA N++   N  + P +G+P
Sbjct: 488  KI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEP 546

Query: 582  LRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQE 641
            + +  QD I  + L+T KD+F  R    QLL    +S + L  F   P            
Sbjct: 547  IIAATQDFITGSYLITHKDSFFERASVNQLL--CMMSDANL-QFDLPP------------ 591

Query: 642  VLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDR 701
                 PAI KP  LWTGKQV + ++                                   
Sbjct: 592  -----PAIIKPVSLWTGKQVFSLLI----------------------------------- 611

Query: 702  KKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVR 761
                  K +K + +  +   K K  +          E++ + E   ++  ++I  + ++ 
Sbjct: 612  ------KPNKASNVVINLDAKAKTYIP--------PERHFANEMSPNDGYVIIRGSQILS 657

Query: 762  GVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILK 818
            GV+DK+   D   + + +T+   YG   A   ++ +S+L   +L   GF+ G++D+    
Sbjct: 658  GVMDKSTLGDGKKHSVFYTILRDYGPTEAAEAMNRMSKLCARYLGNRGFSIGINDVTPGS 717

Query: 819  DKERERKNHLHGSEEIGKRVHLEALELED-----GAEIDPIKLKSEIEKAMRGGGDAAVA 873
            D + ++       E + ++ +L+  EL D       E  P   + +  +A  GG      
Sbjct: 718  DLKNKK-------ELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGG------ 764

Query: 874  YFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQ 933
                 + S++ +      I EL  + L  P       +M T G+KGS +N  Q+ + +GQ
Sbjct: 765  -----LLSKVREEVGEVCIKEL--DSLNAPL------IMATCGSKGSTLNVSQMVAVVGQ 811

Query: 934  QELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDT 993
            Q + G RVP     ++LP F      P++ GF+ + F +GL P E+ FH ++GREGLVDT
Sbjct: 812  QIISGNRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDT 871

Query: 994  AVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV-------DVHQTSF 1046
            AVKT+ +GY+ R L+K+LE L   YD +VR++   IVQF YG DG+       D    +F
Sbjct: 872  AVKTAETGYMSRRLMKSLEDLSSQYDNTVRNSSNGIVQFTYGGDGLDPFDMEGDARPVNF 931

Query: 1047 ISKFD-----ALAARERGR------------------------------GRGRNKFCDKG 1071
            + ++D       + RE G                                  R ++ D+ 
Sbjct: 932  VRQWDHSFNITFSNREMGLLPYQVMEEVEKVLQPLEDRLIRYDNLGHQIISNREEYIDQN 991

Query: 1072 S---------HTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKF--ADKFLSN 1120
                       +FV  +   +   + S  L  +     +    ++DN +     D+ L  
Sbjct: 992  DAEREFYHSIRSFVDKKATHLAKTRQSKHLKPNYTPPTDGEVFVEDNQDSLNAVDQILKI 1051

Query: 1121 EMAKQD-FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
                 D FLK   +K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG
Sbjct: 1052 SAKSVDTFLKQCLYKYSRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLG 1111

Query: 1180 IPRLQEILTIASKDIKTPVITCPLL 1204
            +PR++EI+  ASK I TP+I   L+
Sbjct: 1112 VPRIKEIIN-ASKAISTPIINSVLV 1135



 Score = 44.7 bits (104), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 25/47 (53%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF 47
           C TC      C GHFGHI L +PV++   F  +  +L+ IC  C H 
Sbjct: 67  CSTCHGNLASCHGHFGHIRLALPVFHVGYFKAIIQILQCICKNCGHI 113


>gi|161527856|ref|YP_001581682.1| bifunctional DNA-directed RNA polymerase subunit A'/A''
            [Nitrosopumilus maritimus SCM1]
 gi|160339157|gb|ABX12244.1| DNA-directed RNA polymerase subunit A' [Nitrosopumilus maritimus
            SCM1]
          Length = 1263

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 301/990 (30%), Positives = 461/990 (46%), Gaps = 178/990 (17%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P+ F ++ ++    LLP  +++   ++ + + EL S+     +  +        F L   
Sbjct: 164  PTIFVEKTEIGEHRLLPITIRERFSQIIDEDLELLSYDPVTARPEW--------FVLQAF 215

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
             VPP+  R PS   ++ +  E   T  +  +++ N  L  +         +IV   ++L 
Sbjct: 216  PVPPVTVR-PSIILETGIRSEDDLTHKMVDIIRVNQRLKES--KDAGTPPLIVQDLVDLL 272

Query: 346  QSVNVLFDGKNAAG--QRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
            Q     +     +G  Q    SG     + Q L+ KEG FR  L GKRV+++ R+VISPD
Sbjct: 273  QYHTTTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPD 332

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP 458
            P L ++E+G+P   A++LT PE VT WN+ ++R  +ING E  PG  + +        P 
Sbjct: 333  PNLDLSEVGVPEAVAMKLTIPEIVTEWNIERMRKLVINGPEKFPGVNYIVR-------PD 385

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
              K+R+         R  I +  +       G +V RHL DGD+V+ NRQP+LH+ SIMA
Sbjct: 386  GVKIRLDFVE----DRSTIAETLEI------GYLVERHLADGDIVMFNRQPSLHQMSIMA 435

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H VRVL G KT R+H + C  YNADFDGDEMN+H PQ E +RAEA  ++   +Q + P  
Sbjct: 436  HYVRVLPG-KTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAILLMRVQDQLISPRY 494

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTG---KPGQRVLI 635
            G P+   ++D +  A LLTK DT L   EF  L        + LG +T    KPG +   
Sbjct: 495  GGPIIGALRDFVTGAYLLTKDDTVLTVQEFSNL--------AMLGGYTDPLPKPGTKT-- 544

Query: 636  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
                           K  P +TGKQ+ +                    LP+DF       
Sbjct: 545  ---------------KDGPAYTGKQLFSLF------------------LPKDF------- 564

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
                            T+K  K   G+ K+VV                          I 
Sbjct: 565  ------------NYVITSKWSKGTKGQAKDVV--------------------------IK 586

Query: 756  KNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
              +L+ GVIDK+         ++H + + YG+    + L+++  +   F+  +GF+ G  
Sbjct: 587  NGELISGVIDKSSIGAEEPESVLHRIAKDYGNAVGKSFLNSILIMVKQFITHYGFSYGYG 646

Query: 813  DLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
            DL++    +++  + + G+ +I         +L D  +   +KL   ++       +A  
Sbjct: 647  DLIVPDKDKQQILDDIQGTYDI-------VSDLTDQYKKGTLKLTRGMKPE-----EALE 694

Query: 873  AYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
            AY   ++    +K  SS+  N+ L          N   +M T+GA+GS +N  Q++  LG
Sbjct: 695  AYIVNELGKARDKAGSSA--NDCLP-------ADNAGKIMATTGARGSSLNVGQMAGALG 745

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ   G R+    + + L  +   D  P A GF+   +  GL   E++FH M GREGLVD
Sbjct: 746  QQSRRGNRLHEGYNNRALTHYQEHDDNPDAHGFVKSNYREGLSALEFFFHAMGGREGLVD 805

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDA 1052
            TAV+T +SGY+QR LI  LE +++ YD +VRD  G IVQF YGEDG+DV ++     F+ 
Sbjct: 806  TAVRTQQSGYMQRRLINALEHIRLEYDGTVRDPHGHIVQFLYGEDGIDVQKSDHGEAFNP 865

Query: 1053 LAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEK 1112
                E        K  D G         +E I           N  + +L          
Sbjct: 866  SRLIE------SQKIIDSGKKA-----TKEEIETLAKKYTKTFNPRLTKL---------- 904

Query: 1113 FADKFLSNEMAKQDFLKLVKHKFVL---SLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
              D   ++E++K     + K   +L   +  +PG+ VG++ +QS+GEP TQMTL TFH A
Sbjct: 905  VTDALQNSELSKDGVEAVCKKGLLLYNKAKVEPGQAVGIITAQSIGEPGTQMTLRTFHFA 964

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVI 1199
            G  E NVTLG+PRL E++    K + TP +
Sbjct: 965  GIKERNVTLGLPRLIELVDARKKPV-TPTM 993



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREV 54
           C TCG     CPGHFGH++L  PV +    + +Y LL+  C  C   K  + ++
Sbjct: 61  CLTCGNTAARCPGHFGHLELAEPVLHIAFIDNIYKLLQSTCRSCARLKVPQEDL 114


>gi|449299692|gb|EMC95705.1| hypothetical protein BAUCODRAFT_34468 [Baudoinia compniacensis UAMH
           10762]
          Length = 1744

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 263/757 (34%), Positives = 374/757 (49%), Gaps = 126/757 (16%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG +   CPGH GHI++ VP Y+P   + +  LL+ +C +C   K SR  V K + +
Sbjct: 62  CATCGLKNPQCPGHCGHIEMPVPCYHPTFMDQVLRLLRGMCIYCSRLKMSRVVVHKMLSR 121

Query: 61  LELIIKGDIIAAKSLD-LDLPSESSNPEDSDVSNKSSC---------SMVTPRGNY---D 107
           L LI  G +     LD + + + +    D+  S++            + V  R ++   +
Sbjct: 122 LRLIQYGLLTELHELDAMSIRAVAGGKGDTARSDEEEEIDEDDDAEANTVIARLDHFVAN 181

Query: 108 NVRNLKPQEWTSLQFAEA-----KLALLQFLKIET--TKCGNCKAKN------------- 147
            +R  K     S Q  EA     +  +  F+   T   KCGNCK  N             
Sbjct: 182 AIRTAKQNGTFSTQKTEATTSARRAVIADFMGRMTGSRKCGNCKGINHKYRKDRYVKIFR 241

Query: 148 -PRISKPTFGWI---HMNGMPHADIR----ANLIRGCNLGETFSGGEEEKDLGASS---- 195
            P   K +F  I   H    P  ++R    A L R     +     E+EKD G +     
Sbjct: 242 KPLTEKESFAMIQSGHRAKDPIVELRKKQQAELSR-----KRKREAEKEKDEGIADMDGS 296

Query: 196 ------------------DVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDL 237
                             +    E     G   G+   A  R +K     PS        
Sbjct: 297 EEGEEEGEGDDVNMDDGVESSEEEVRIAGGDIIGSATEAGTRTRKSQ--TPS-------- 346

Query: 238 FSGPLLPSDVKDIIEKLWENEFELCSFI--SDMQQQGFGKKAGHSIFFLGVVLVPPIKFR 295
               L PS V   + +L+E E E+ + +      ++  GK     +FFL  +LVPP ++R
Sbjct: 347 -EEYLNPSRVHAHLSQLFEREQEVLAAVYGHKRSERRGGKPLTPDMFFLRTILVPPNRYR 405

Query: 296 LPSK-GGDSVMEHPQTVLLSKVLQANIYLANAYVN-----------QPDNAKVIVARWMN 343
             ++ G D + E  +  L   +L A   L+N               +  N   +   W+ 
Sbjct: 406 PEARTGSDEIAEAQENTLYKNILNACETLSNIQRELSGKQESDPRYRARNYGDLENSWIQ 465

Query: 344 LQQSVNVLFDGKNA----AGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDP 399
           LQ +VN L D   A    A  R +  GI Q LEKKEG+FR+ +MGKRVN+A R+VISPDP
Sbjct: 466 LQDAVNSLVDRDLAPLSGAAARRLPDGIKQKLEKKEGMFRKYMMGKRVNFAARTVISPDP 525

Query: 400 YLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPN 459
            +  NEIG+PP FA++LTYPE VT WN+ +L++++ NG  + PGA     +   +     
Sbjct: 526 NIETNEIGVPPVFAIKLTYPEAVTEWNIEELQEAVKNGPHVWPGAVAIESETGQV----- 580

Query: 460 KKMRISIGRKLDTSRGAIVQP------GKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHK 513
               +++ RK    R A+         G         K V+RHL +GD+V++NRQPTLHK
Sbjct: 581 ----VNLERKNAEDRTALANQLLAPSVGPTGVKGTRPKKVHRHLNNGDIVIMNRQPTLHK 636

Query: 514 PSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQY 573
           PS+M H  RVL GEKTLRMHYANC+TYNADFDGDEMN+HFPQ+E +RAEA +I + ++QY
Sbjct: 637 PSMMCHRARVLPGEKTLRMHYANCNTYNADFDGDEMNMHFPQNEAARAEALSIADTDHQY 696

Query: 574 VRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRV 633
           +  + G+PLR LIQDHI     LT +D F +R ++ QLLY++    SG            
Sbjct: 697 LSSTAGNPLRGLIQDHISMGVWLTNRDMFFDRADYMQLLYAAIRPESG------------ 744

Query: 634 LISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
             +R + E +P  PAIWKP+PLWTGKQV+T VL +I+
Sbjct: 745 HCARKQIETVP--PAIWKPKPLWTGKQVVTTVLKNIS 779



 Score =  367 bits (942), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 224/495 (45%), Positives = 293/495 (59%), Gaps = 55/495 (11%)

Query: 749  EEKLLIYKNDLV-RGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH 805
            EE  L+ K+  V  GV+DK Q      G VH V ELYG  TAG LLS L RL T    M 
Sbjct: 806  EEGTLLVKDGYVCHGVLDKNQIGPSAGGFVHAVYELYGHVTAGRLLSILGRLLTRLENMR 865

Query: 806  GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALEL-EDGAEIDPIKLKSEIEKAM 864
             F+CGV+DL+  ++ E +R+  L  +E +G  V  + + L E     D  +L+  +E  +
Sbjct: 866  AFSCGVEDLVFTREGEEKRRQALADAETVGFEVAKKYVGLAEQNVGRDNRELRVRLEDVL 925

Query: 865  RGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNF 924
            R   DA     D ++T+      SS+V N  L   L+KP   N +  MT+SGAKGSKVN 
Sbjct: 926  RD--DAKQRGLD-QLTNSATSVLSSAVTNACLPAALVKPFPANQMQTMTSSGAKGSKVNA 982

Query: 925  QQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCM 984
             QIS +LGQQ LEG+RVP MVSGKTLP F P++ + RAGG+++DRFLTG+RPQE++FH M
Sbjct: 983  NQISCNLGQQILEGRRVPVMVSGKTLPCFKPFESSVRAGGYVVDRFLTGVRPQEFFFHAM 1042

Query: 985  AGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT 1044
            AGREGL+DTAVKTSRSGYLQRCLIK +E LKI YD SVRDADGSIVQF YGEDG+DV + 
Sbjct: 1043 AGREGLIDTAVKTSRSGYLQRCLIKGMEGLKIEYDTSVRDADGSIVQFLYGEDGLDVAKA 1102

Query: 1045 SF-----------ISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLD 1093
             F           +S F +L   E G  R      D+ +   +  +N    Y+K +G L 
Sbjct: 1103 KFLGDFKFEAENHVSFFRSLGDEEGGFER---VLSDEAA---LYNKNAIRKYRK-TGDLA 1155

Query: 1094 ASN------------------------AYIMELPDAL-KDNAEKFADKFLSNEMAKQDFL 1128
            A++                         Y+ E PD L KD         +   + ++ F 
Sbjct: 1156 AADPALEVYRPSRFAGSTSEKVYSEAKQYMDENPDKLIKDKKAG-----IEGRVTRKAFQ 1210

Query: 1129 KLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILT 1188
            +++  +++ S+ + GE VG++A QSVGEPSTQMTLNTFHLAG    NVTLGIPRL+EI+ 
Sbjct: 1211 RILDMRYLRSVVEAGEAVGVVAGQSVGEPSTQMTLNTFHLAGHAAKNVTLGIPRLREIVM 1270

Query: 1189 IASKDIKTPVITCPL 1203
             A+K   TP +T  L
Sbjct: 1271 TAAKQNATPTMTLRL 1285


>gi|346324489|gb|EGX94086.1| DNA-directed RNA polymerase III [Cordyceps militaris CM01]
          Length = 1486

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 303/1014 (29%), Positives = 479/1014 (47%), Gaps = 188/1014 (18%)

Query: 257  NEFELCSFISDMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVM-EHPQTVLLS 314
            N F++ +  +D +  G     G    F+   L  PP+  R PS   D+   E   T  L+
Sbjct: 282  NLFKMIT-ATDCELLGLNAAEGRPEMFIWQFLPAPPVCIR-PSVAQDNASNEDDITTKLA 339

Query: 315  KVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD----GKNAAGQRDMASGICQL 370
             ++  +  + +A + +    + I+ +W  LQ  + +  +    G    G      G CQ 
Sbjct: 340  DIVWVSGMIRSA-LQKGSAIQTIMEQWEYLQTQIAMYVNSDVPGLQQPGFGKAMRGFCQR 398

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ K+G FR  L GKRV+++ R+VISPDP L ++E+ IP   A  LTYPERV   N+ KL
Sbjct: 399  LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLGIDEVAIPQLVAKNLTYPERVQRQNMAKL 458

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNK-KMRISIGRKLDTSRGAIVQPGKDSDNEFE 489
            R  + NG ++ PGA       S +++     K+ +  G +   +R   +           
Sbjct: 459  RQCVTNGCDVWPGAQ------SVIKMDEGGYKINLKFGNRNMVARDLRI----------- 501

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G +V RH++DGD+VL NRQP+LHK SIM+H+ ++ +  +T R++   C+ YNADFDGDEM
Sbjct: 502  GDVVERHIEDGDIVLFNRQPSLHKLSIMSHLAKI-RPWRTFRLNECVCNPYNADFDGDEM 560

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ E +R EA  ++   +    P +G P+    QD I +A LL+ KD F +R  F 
Sbjct: 561  NLHVPQTEEARTEAITLMGVRHNLTTPKDGAPIIGATQDFITAAFLLSSKDRFFDRKTFT 620

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
             +                     +L S++  ++ P  P I  P  LWTGKQ+   ++   
Sbjct: 621  YMCM------------------HMLDSQTRLDLPP--PTIIAPVALWTGKQLFNVMM--- 657

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
               RP                     +K+S+ + N + K        K  SGK K + + 
Sbjct: 658  ---RP---------------------NKESNIRINFESKC-------KTFSGKSKNIPDM 686

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY---GLVHTVQELYGSNT 786
             P                ++  L++  ++++ GV+DKA         + + +   +G++ 
Sbjct: 687  DP----------------NDGWLVVRNSEVMCGVMDKATVGTGKKDSVFYVMLRDFGADH 730

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEA 842
            A T ++ L+RL    L   GF+ GV D+     +  + ER        S+++ +      
Sbjct: 731  AATAMNRLARLCARTLTNRGFSIGVGDVCPTGSLTAETERLVSIAYKQSDDLIESFKAGK 790

Query: 843  LELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLK 902
            LE   G       L+  +E ++ G            + S++ +      ++ L       
Sbjct: 791  LEKAPGC-----NLEQTLENSISG------------ILSRVRQQAGDYCVDTL------- 826

Query: 903  PTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRA 962
             +  N   +M  SG+KGS +N  Q+ + +GQQ + G+RVP     ++LP F      P +
Sbjct: 827  -SRNNAPLIMAKSGSKGSDINVAQMVALVGQQIIGGQRVPDGFQDRSLPHFFKNARQPPS 885

Query: 963  GGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSV 1022
             GF+ + F TGL P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +V
Sbjct: 886  KGFVKNSFYTGLYPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTV 945

Query: 1023 RDADGSIVQFCYGEDGVD-------------------VHQTSFISKFDALAARERGRGRG 1063
            R + G++VQF +G D +D                      T++ ++  AL   E     G
Sbjct: 946  RTSGGTVVQFQFGGDRLDPVDMEGSGAPVQFVRTWRHAENTTWDNEEVALTPNEARELCG 1005

Query: 1064 ------RNKFCDKGSHTFVMGRNQEMIYKKCS----GQLDASNAYIMELPD---ALKDNA 1110
                  RN+F  KG     +   +++ Y   S     + + +  +I E+ D   AL D  
Sbjct: 1006 NMLASERNRFPRKG-----LLHGEDLAYTDVSDYAVDEHEGARKFITEVKDFVGALADKL 1060

Query: 1111 EKF--------ADKFLSNEMAKQD------------FLKLVKHKFVLSLAQPGEPVGLLA 1150
            E+          DK  S      D            F+KL  HK+  +  +PG  VG + 
Sbjct: 1061 ERVRALAGLAGKDKTGSAAQDHADRTAKITATTLRLFIKLCLHKYKKAQVEPGHAVGAVG 1120

Query: 1151 SQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            +QS+GEP TQMTL TFH AG   M++T G+PR++EI+  ASK I TPVITCPL+
Sbjct: 1121 AQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN-ASKAISTPVITCPLM 1173


>gi|336468277|gb|EGO56440.1| hypothetical protein NEUTE1DRAFT_122981 [Neurospora tetrasperma
           FGSC 2508]
 gi|350289470|gb|EGZ70695.1| putative DNA-directed RNA polymerase I [Neurospora tetrasperma FGSC
           2509]
          Length = 1701

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 263/733 (35%), Positives = 377/733 (51%), Gaps = 85/733 (11%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC   Q  CPGH GHI+L VPVY+P+  +  Y LL+  C +CH F+  RRE+ +    
Sbjct: 62  CTTCNLGQSQCPGHPGHIELPVPVYHPVFMDQAYRLLRAQCVYCHRFRLPRREIHRYSCM 121

Query: 61  LELIIKGDIIAAKSLD----------------LDLPSE--------SSNPEDSDVSNKSS 96
           L L+  G +  A+ +D                 D+P           +N  DS +  + +
Sbjct: 122 LRLLQCGLLKEAQMIDSFGESEFGSAIRQFQLADVPEMEDDEAEEEGNNLNDSTIRQREA 181

Query: 97  CSMVTPRGNYDNVRNLKPQEWTSLQFAEAKLALL-QFLK--IETTKCGNCKAKNPRISKP 153
                 R +   V      +      AE + AL+ +FL   I+  KC  C   +P   K 
Sbjct: 182 YVRAVLRDHRTKVTMRDINKGKHEGAAEMRRALVKEFLAAIIKDKKCRTCDGISPVYRKD 241

Query: 154 TFGWIHMNGMPHADIRANLIRGCNLGETFS--GGE--EEKDLGASSDVDAPETHSFNGTF 209
            +  I    +   +  A    G    +  +  GG+  +  D    +D+++  + S N   
Sbjct: 242 RYTKIFERDLTQKEKAAMAQAGRKRADALAMKGGKKKDHDDDEGIADIESTASESDNSEG 301

Query: 210 PGTQ---DTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI- 265
            G +   +        GS        +++ L    +   +VK+ +  L++ E E+ S + 
Sbjct: 302 EGEELDENGDVVMADAGSKTKAKEKAEKRALPQRYISSLEVKERLNFLFQKEQEIVSLLF 361

Query: 266 SDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA- 324
           S   +    K     +FF+  +LVPP KFR  ++ GD V E  Q  L   +L+ +  +A 
Sbjct: 362 SSKPRPKHAKPMTADMFFIQTLLVPPNKFRPEARMGDQVTEAQQNSLYKLILRGSSMVAQ 421

Query: 325 -------NAYVNQPDNAK------VIVARWMNLQQSVNVLFDG-----KNAAGQRDMASG 366
                   A  N P++ +       +   W  LQ +VN L D      + AAG+R+   G
Sbjct: 422 ISREVSETAKGNAPEDGRRARDINALYQAWTQLQDAVNSLIDRDKNPVQGAAGKRN-EDG 480

Query: 367 ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
           I Q LEKKEGLFR+ +MGKRVN+A RSVISPDP +  +EIG+PP FA +LTYPE VT  N
Sbjct: 481 IKQKLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETSEIGVPPVFARKLTYPEPVTSHN 540

Query: 427 VVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIV-QPGKDSD 485
              L++++ NG E  PGA+          +       I++  K    R A+  Q    ++
Sbjct: 541 YHDLKNAVQNGMEKWPGASA---------IEMENGQIINLRNKSSEERQALANQLLAPTN 591

Query: 486 NEFEG---KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNA 542
           N F G   K V+RHL +GDVVL+NRQPTLHKPSIM H VRVL GEKT+RMHYANC+TYNA
Sbjct: 592 NNFSGVRNKKVHRHLTNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNA 651

Query: 543 DFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTF 602
           DFDGDEMN+HFPQ+E++RAEA  + + ++QY+  + G PLR LIQDH+  + +L  KDTF
Sbjct: 652 DFDGDEMNMHFPQNEIARAEALQLADTDHQYISGTAGKPLRGLIQDHLSVSVILCNKDTF 711

Query: 603 LNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI 662
            +R  + QL+Y++    SG             I   + E+LP  PAI KP P WTGKQVI
Sbjct: 712 FDRANYHQLIYAALRPESG------------HIMGDKIELLP--PAIIKPIPRWTGKQVI 757

Query: 663 TAVLNHITRGRPP 675
           T +L +I   +PP
Sbjct: 758 TTILKNI---KPP 767



 Score =  368 bits (945), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 211/484 (43%), Positives = 293/484 (60%), Gaps = 40/484 (8%)

Query: 749  EEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH 805
            EE  + +++ + + G++DK+Q   +  GL+H++ E+YG + AG LLS + RL T +L M 
Sbjct: 791  EEGQVTFRDGEFITGILDKSQLGPSSGGLIHSIHEVYGPSAAGKLLSCMGRLLTRYLAMV 850

Query: 806  GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEI--DPIKLKSEIEKA 863
             F+CG+DDL++    E +R+  +  +  IG  V  + + LE+      DP+ L+  +E+ 
Sbjct: 851  AFSCGMDDLVMTPKGEADRREKIKAAAHIGLEVAAKYVSLEEQKPTPEDPLLLQ-RLEEV 909

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
            MR   D      D+ M +Q     SS +    L  GL K   KN +  MTTSGAKGS VN
Sbjct: 910  MRN--DKKQENLDLLM-NQRCAQLSSEITKTCLPAGLQKKFPKNQMQSMTTSGAKGSPVN 966

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
               IS +LGQQ LEG+RVP MVSGKTLPSF P+D   RAGG+I+ RFLTG+RPQEYYFH 
Sbjct: 967  ANLISCNLGQQVLEGRRVPVMVSGKTLPSFKPFDTNARAGGYIVQRFLTGIRPQEYYFHH 1026

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGL+DTAVKTSRSGYLQRCLIK +E LK++YD SVRD+DGSI+QF +GEDG+D+ +
Sbjct: 1027 MAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVAYDTSVRDSDGSIIQFLFGEDGIDISK 1086

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSG------------- 1090
              +++ F+    R          + ++G+      ++ EMI +  +              
Sbjct: 1087 QKYLNDFE-FVLRNLKSELAHLHYSEEGTQALFEHKD-EMIKRMKAAIKSRDTRNPLNPI 1144

Query: 1091 ---------QLDASNAYIMELPDALKDN-----AEKFADKFLSNEMAKQDFLKLVKHKFV 1136
                         S  +  ++   +K+N      EK  D   S  + +++  K++  K++
Sbjct: 1145 ESDVDPALYAFATSENFFEKMTKYVKENKDGLIKEKKGDS--SGIIVRKNAEKILAAKYI 1202

Query: 1137 LSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKT 1196
             SL +PGE VG++A QSVGEPSTQMTLNTFHLAG    NVTLGIPRL+EIL  AS  I T
Sbjct: 1203 RSLVEPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASAKIST 1262

Query: 1197 PVIT 1200
            P +T
Sbjct: 1263 PAMT 1266


>gi|324499645|gb|ADY39853.1| DNA-directed RNA polymerase I subunit RPA1 [Ascaris suum]
          Length = 909

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 310/980 (31%), Positives = 460/980 (46%), Gaps = 170/980 (17%)

Query: 15  FGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEK--CVRKLELIIKGDIIAA 72
            G+I L VPV+NPLLF+  Y+L+K  C  CH F      V     + +L  +  G +  A
Sbjct: 1   MGYIQLDVPVFNPLLFSFTYSLMKGTCVHCHRFTCQTNGVAAKILLAQLRALDLGMLSTA 60

Query: 73  KSLDLDLPSESSNPEDS----------------------DVSNKSSCS----MVTPRGNY 106
             L+  +  + S+  +S                      ++S KS+ S    MV P  N 
Sbjct: 61  HQLESYISEKFSHTGNSIGDTPQLSNEMTAITELDAIFAELSGKSTSSLQKDMVKPMKNA 120

Query: 107 DNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHA 166
             ++        SL  A  +  L + +K    +C  C   N  +       I ++    A
Sbjct: 121 VELKR-------SLMHAFCRDHLFKHMK----RCKLCHGGNGVLRNDGGRCILIDFSGVA 169

Query: 167 DIRANLIRG-CNLGETFSGGEEEKDLGASSDVDAPETHS--FNGTFPGT-QDTAARRHQK 222
             RA  +    N        E E D    +DVD  E      N    G   DTA     K
Sbjct: 170 TTRAAKMSAKFNAVNDLMEQEVEVD---PNDVDEKEGDKKLLNDNSLGMLNDTAELTLHK 226

Query: 223 GSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIF 282
              AV +G  ++    +      +V++    +W+N+      +  +      +     + 
Sbjct: 227 QLAAVENGTCEKLAWRA-----VEVREHFRMVWKNDAAFLKKLFPLFDCDDSEHCPMDVL 281

Query: 283 FLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQAN-----IYLA------NAYVNQP 331
           F   VLVPP KFR          E+PQTV L K+L+A      + +A      NA + + 
Sbjct: 282 FCEKVLVPPTKFRPIRYFKGDKFENPQTVNLRKLLEATETMRAVRMAVSGGKNNAALMEL 341

Query: 332 DNAKV--------IVARWMNLQQSVNVLFDGK--NAAGQRDMASGICQLLEKKEGLFRQK 381
            + +V        +   ++ LQQ +  +FD      + QR +  GI Q+LEKK+GLFR  
Sbjct: 342 ISTRVPGKTMREKMHNSYLVLQQRIGAIFDQDLDRTSDQRSLIPGIKQILEKKQGLFRMN 401

Query: 382 LMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIH 441
           +MGKRVN+ACRSVI+PDPYL ++EIGIP  FA +LT+PE  +  N+ KLR  + NG   H
Sbjct: 402 MMGKRVNFACRSVITPDPYLDIDEIGIPEIFAKKLTFPEPASLINLPKLRKLVKNGPAKH 461

Query: 442 PGATHYLDK--LSTMRLPPNKKMRISIGRKL---DTSRGAIVQPGKDSDNEFEGKMVYRH 496
           PGA   L       + L   ++ R +  ++L   +T+R  +  P K          V RH
Sbjct: 462 PGANFVLRPGGFKQVLLDEKREERFAEAKRLQPANTTR--LAHPVK----------VLRH 509

Query: 497 LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
           L  GD++L+NRQP+LHKPSIM H VRVL G++ LRM+YA C  YNADFDGDEMN HF Q+
Sbjct: 510 LDRGDLMLMNRQPSLHKPSIMGHRVRVLTGQRALRMNYAPCKAYNADFDGDEMNGHFVQN 569

Query: 557 EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            +++ E   I N  + ++ P +G PL  LIQDH+VS  LLT +  F N+++F  L+ ++ 
Sbjct: 570 RIAQTEVAEIANVGSNFLVPKDGTPLLGLIQDHVVSGVLLTLRGRFFNKEDFMHLVLAAF 629

Query: 617 VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI-TAVLNHITRGRPP 675
             +S          QR+        VLP  P++ KP+ LW+GKQVI T +LN I RG+P 
Sbjct: 630 AQTS----------QRI--------VLP-PPSMLKPQKLWSGKQVISTILLNCIPRGQPL 670

Query: 676 FVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEK 735
             +    K P   +K                G L                          
Sbjct: 671 INLTSKAKTPLSCWKV---------------GNLP------------------------- 690

Query: 736 EAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSA 793
                 + + E+SE +++  + +L+ GV+DK  +    YGL+H   ELYG   A ++LS 
Sbjct: 691 ------APKFEMSESEVIFRQAELLVGVLDKQHYGSTQYGLIHCCWELYGHRCATSILSC 744

Query: 794 LSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            SRLFT  LQ HGFT GV D+L+ K  +++RK  +    + G  V  E   L+  A    
Sbjct: 745 FSRLFTTHLQYHGFTLGVADILVNKKADKQRKRVIRALRKCGDDVVKECFGLDTDAS--- 801

Query: 854 IKLKSEIEKAMRG------GGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKN 907
              ++EI   M G      G D +V   D +M  +LNK  S  + +  +  GL++   +N
Sbjct: 802 ---QNEIRDVMAGAYCNPRGEDQSVQQLDFRMKEKLNKF-SEQINSACVPTGLIRSFPRN 857

Query: 908 WISLMTTSGAKGSKVNFQQI 927
            + +M  SG+KG+ VN  Q+
Sbjct: 858 ALQMMILSGSKGTMVNSMQV 877


>gi|255722720|ref|XP_002546294.1| DNA-directed RNA polymerase III largest subunit [Candida tropicalis
            MYA-3404]
 gi|240130811|gb|EER30373.1| DNA-directed RNA polymerase III largest subunit [Candida tropicalis
            MYA-3404]
          Length = 1159

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 292/970 (30%), Positives = 457/970 (47%), Gaps = 175/970 (18%)

Query: 286  VVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA---NAYVNQPDNAKVIVARWM 342
            V + P +     S   D  ++  + V  S +++A I      N  + Q D  ++ VA ++
Sbjct: 265  VCIRPSVMMDAQSNEDDLTVKLTEIVWTSSMIKAGILKGISINNLMEQWDYMQLSVAMYI 324

Query: 343  NLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLA 402
            N   +   L  G   A         CQ L+ K+G FR  L GKRV+++ R+VISPDP L 
Sbjct: 325  NSDSANPALSAGGGGAKASKPIRAFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLK 384

Query: 403  VNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM 462
            ++E+ +P   A  LTYPE+ T +N  KL+  + NG + +PGA +    ++    P  + +
Sbjct: 385  IDEVAVPDRVAKVLTYPEKCTRYNRKKLQRLVYNGPDTYPGANY----VAKQNEPGKRNL 440

Query: 463  RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
            R     KL             + N   G +V RH++DGDVVL NRQP+LH+ SI++H  +
Sbjct: 441  RFGDRAKL-------------AKNLQIGDVVERHIEDGDVVLFNRQPSLHRLSILSHYAK 487

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA N++   N  + P +G+P+
Sbjct: 488  V-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPI 546

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
             +  QD I  + L++ KD+F +R    QLL  S +S + +  F   P             
Sbjct: 547  IAATQDFITGSYLISHKDSFFDRASLSQLL--SMMSDANI-QFDIPP------------- 590

Query: 643  LPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRK 702
                PAI+KP  LWTGKQV + ++                  P    K   N D      
Sbjct: 591  ----PAIFKPVMLWTGKQVFSLLIK-----------------PNKQSKVVINLD------ 623

Query: 703  KNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRG 762
                   +K    H    G   E+                     ++  ++I  + ++ G
Sbjct: 624  -------AKNKTFHPPAKGLPNEMSP-------------------NDGFVVIRGSQILSG 657

Query: 763  VIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKD 819
            ++DK+   D   + + +T+   YG   A   ++ ++++   +L   GF+ G++D  +   
Sbjct: 658  LMDKSTLGDGKKHSVFYTILRDYGPQEAANAMNRMAKMCARYLGNRGFSIGIND--VTPA 715

Query: 820  KERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKM 879
             E ++K  L   +   K   L  L      E  P   + +  +A  GG           +
Sbjct: 716  DELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGG-----------L 764

Query: 880  TSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGK 939
             S++ +      I EL  + L  P       +M T G+KGS +N  Q+ + +GQQ + G 
Sbjct: 765  LSKVREEVGEVCIREL--DSLNAPL------IMATCGSKGSTLNVSQMVAVVGQQIISGH 816

Query: 940  RVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSR 999
            RVP     ++LP F      P++ GF+ + F +GL P E+ FH ++GREGLVDTAVKT+ 
Sbjct: 817  RVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAE 876

Query: 1000 SGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERG 1059
            +GY+ R L+K+LE L   YD +VR++   IVQF YG DG+D +                G
Sbjct: 877  TGYMSRRLMKSLEDLSTQYDNTVRNSSNGIVQFTYGGDGLDPYDM-------------EG 923

Query: 1060 RGRGRNKFCDKGSHTFVMGRN-----------QEMIYKKCSGQLDASNAYIMELPDALKD 1108
              R  N F  +  H+F +  N            E++  K S  L+  N    E   ++K+
Sbjct: 924  DARPVN-FNRQWDHSFNLTYNVDDKGLLPYQISELVDSKLS-PLETGNNAETEFYKSIKE 981

Query: 1109 NAEKFADK------------FLS----------------NEMAK------QDFLKLVKHK 1134
               K +D+            F++                N++ K      + FL+   +K
Sbjct: 982  FIAKKSDRLGRLREDRGLKAFVTAGDMEVDEDPAVVNSVNQILKISQKTIEKFLEQCLYK 1041

Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
            +  +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR++EI+  ASK I
Sbjct: 1042 YSRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-ASKVI 1100

Query: 1195 KTPVITCPLL 1204
             TP+I   L+
Sbjct: 1101 STPIINSVLV 1110



 Score = 42.4 bits (98), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC      C GHFGHI L +PV++   F  + ++L+ IC  C
Sbjct: 67  CSTCHGNLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKNC 110


>gi|393235145|gb|EJD42702.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Auricularia delicata TFB-10046 SS5]
          Length = 1404

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 328/1058 (31%), Positives = 492/1058 (46%), Gaps = 200/1058 (18%)

Query: 217  ARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWE-NEFELCSFISDMQQQGFGK 275
            A   +K      S  + QKDL  G  L    K +IE+L      +L   ISD   +  G 
Sbjct: 182  ADEMEKFKSTFKSAVEFQKDL--GTYLS---KAVIEELNPLKVLDLFKRISDEDCELLGM 236

Query: 276  KAGHSI---FFLGVVLVPPIKFR--LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQ 330
            K  H     +    + VPP+  R  +   GG +  E   TV L++++ +N  +    + +
Sbjct: 237  KPVHGRPEHYLWQYISVPPVCIRPSVAQDGGSN--EDDLTVKLAEIVFSNTLIKQG-IQK 293

Query: 331  PDNAKVIVARWMNLQQSVNVLFDG-----KNAAGQRDMASGICQLLEKKEGLFRQKLMGK 385
                + ++ +W  LQ SV V  +      +N   QR +  G CQ L+ K+G FR  L GK
Sbjct: 294  GAPIQQLMEQWEFLQISVAVYINSEMPGLQNQPNQRPI-RGFCQRLKGKQGRFRGNLSGK 352

Query: 386  RVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGAT 445
            RV+++ R+VISPDP L ++E+ +P   A  LTYPERVT  N+ KLR ++ NG ++HPGA 
Sbjct: 353  RVDFSGRTVISPDPNLRIDEVAVPQRVAKILTYPERVTSSNLEKLRLAVRNGPDVHPGAN 412

Query: 446  HYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLV 505
            + +   +        K  +  G + D +           D    G +V RH+ DGD++L 
Sbjct: 413  YVVAASNGF------KKFLKFGNRDDVA-----------DKLRVGDVVERHVIDGDIILF 455

Query: 506  NRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYN 565
            NRQP+LHK SIM H  +V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA  
Sbjct: 456  NRQPSLHKLSIMCHRAKV-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEASQ 514

Query: 566  IVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSF 625
            ++   N  V P NG+P+ + IQD I ++ LL +KD F  R +F Q+    G     L   
Sbjct: 515  LMWVVNNLVTPRNGEPVIAAIQDFITASYLLCRKDRFYTRAQFTQI---CGYFGDALVHI 571

Query: 626  TGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLP 685
               P                 P I KP  LWTGKQ+ + +L      RP           
Sbjct: 572  ELPP-----------------PVILKPARLWTGKQIFSCLL------RP----------- 597

Query: 686  QDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEK 745
                      +K ++   N +   +K N+  K               + K      + E 
Sbjct: 598  ----------NKSTNVLVNVE---TKCNQFEKP--------------DPKHYPSWMTPEN 630

Query: 746  ELS--EEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTV 800
            +LS  +  L+I  ++++ G +DKA         +   + + YG   A   +  L++L   
Sbjct: 631  DLSLNDGWLVIVNSEIMSGTLDKATIGSGKKKSVFGAIMKDYGPQEAALAMGRLAKLCAR 690

Query: 801  FLQMHGFTCGVDDL----LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI-- 854
            FL   GF+ G++D+    L+  +K+R         +++  +     L+ + G   D    
Sbjct: 691  FLANFGFSIGINDVTPGPLLTGEKQRLVTEAYEKCQKLIDQAKRGQLQNKPGCNTDQTLE 750

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
             L S+I   +RG     V    MK   +L++H +                   W   M T
Sbjct: 751  ALISDILSDVRG----QVGKICMK---ELSRHNAP------------------WT--MAT 783

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
             G+KGS  N  Q+ + +GQQ + G+RVP     ++LP F      P + GF+ + F TGL
Sbjct: 784  CGSKGSVDNVAQMVACVGQQIIGGRRVPDGFQDRSLPHFEKKSKDPASKGFVSNSFYTGL 843

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
               E+  H ++GREGLVDTAVKT+ +GY+QR L+K LE L   YD SVR++ G +VQF Y
Sbjct: 844  TATEFLLHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRNSVGGVVQFYY 903

Query: 1035 GEDGVDV-------HQTSFISKFD---ALAARERGRGRGRNKFCDKGSHTFVMGRNQEMI 1084
            G DG+D        +   F+  +    A AARE             G   + +    +  
Sbjct: 904  GNDGLDPACMEAEDNPVEFVRAWKHAFATAARE-----------GPGLLPYEIEELAKTT 952

Query: 1085 YKKCSGQLDASNAYIMELPDALKDN-AEKFA------------DKFLS-------NEMAK 1124
                    DA   Y+  + D ++ N  EK A            DK  +       N  A 
Sbjct: 953  ISSFGALADAEEDYLNTVEDFVRINLVEKLAAIRRRYGLLDGRDKPGARSKNRDWNAGAG 1012

Query: 1125 QDF-------LKLVKHKFVLSL-----------AQPGEPVGLLASQSVGEPSTQMTLNTF 1166
            +D        LK+ K + +L L            +PG  VG + +QS+GEP TQMTL +F
Sbjct: 1013 EDVINAVNNTLKVAKPQLLLFLQNCWSRYVQSKIEPGSNVGAIGAQSIGEPGTQMTLKSF 1072

Query: 1167 HLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            H AG   MNVTLG+PR++EI+  A+K I TP+I+C L+
Sbjct: 1073 HFAGLASMNVTLGVPRIKEIIN-AAKTIATPIISCMLV 1109



 Score = 42.0 bits (97), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG     C GH+ +I L++PV++   F     +L++IC  C     S  E
Sbjct: 66  CETCGHPTQDCVGHYAYIKLMLPVFHVGYFRHTINILQQICKTCARVMLSESE 118


>gi|150951372|ref|XP_001387687.2| DNA-directed RNA polymerase III subunit C1 (RPO31) [Scheffersomyces
            stipitis CBS 6054]
 gi|149388539|gb|EAZ63664.2| DNA-directed RNA polymerase III subunit C1 (RPO31) [Scheffersomyces
            stipitis CBS 6054]
          Length = 1448

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 295/1002 (29%), Positives = 460/1002 (45%), Gaps = 210/1002 (20%)

Query: 286  VVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANI---YLANAYVNQPDNAKVIVARWM 342
            V + P +     S   D  ++  + V  S +++A I      N  + Q D  ++ VA ++
Sbjct: 265  VCIRPSVMMDSQSNEDDLTVKLTEIVWTSSLIKAGIEKGISINNLMEQWDYLQLSVAMYI 324

Query: 343  NLQQSVNVLFDGKNAAGQRDMA--SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
            N   +   L       G +      G CQ L+ K+G FR  L GKRV+++ R+VISPDP 
Sbjct: 325  NSDSANPALLPSSGGGGSKSSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPN 384

Query: 401  LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK 460
            L ++E+ +P   A  LTYPER T +N  KL+  ++NG +IHPGA +       M+     
Sbjct: 385  LKIDEVAVPELVAKVLTYPERCTRYNRKKLQRLVVNGPDIHPGANY------VMKQNEQA 438

Query: 461  KMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHV 520
            K  +  G ++  ++   +           G +V RH++DGDVVL NRQP+LH+ SI++H 
Sbjct: 439  KRNLRFGDRVKLAKNLQI-----------GDLVERHIEDGDVVLFNRQPSLHRLSILSHY 487

Query: 521  VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGD 580
             ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA N++   N  + P +G+
Sbjct: 488  AKI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 546

Query: 581  PLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQ 640
            P+ +  QD I  + L++ KD+F +R    QLL    + S     F   P           
Sbjct: 547  PIIAATQDFITGSYLISHKDSFFDRASLVQLL---SMMSDADVQFDIPP----------- 592

Query: 641  EVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSD 700
                  P+I+KP  LWTGKQV + ++                                  
Sbjct: 593  ------PSIFKPVMLWTGKQVFSLLI---------------------------------- 612

Query: 701  RKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLV 760
                   K +K + +  +   K K  +  + G   E   N        +  ++I  + ++
Sbjct: 613  -------KPNKKSNVVINLDAKCKTFIPPEKGLPSEMSPN--------DGFVIIRGSQVL 657

Query: 761  RGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLIL 817
             GV+DK+   D   + + +T+   YG   A T ++ +++L   FL   GF+ G++D+   
Sbjct: 658  AGVMDKSLLGDGKKHSVFYTILRDYGPEEAATAMNRMAKLCARFLGNRGFSIGINDVTPG 717

Query: 818  KDKERERKNHLHGS----EEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVA 873
             D  R+++  +  +    +E+    H   LE + G   +       +E  + G       
Sbjct: 718  FDLRRKKELMVEQAYLKCDELIDLYHRGKLETQPGCNEE-----QTLEAKISG------- 765

Query: 874  YFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQ 933
                 + S++ +      I EL  + L  P       +M T G+KGS +N  Q+ + +GQ
Sbjct: 766  -----LLSKVREEVGEVCIREL--DSLNAPL------IMATCGSKGSTLNVSQMVAVVGQ 812

Query: 934  QELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDT 993
            Q + G RVP     ++LP F      P++ GF+ + F +GL P E+ FH ++GREGLVDT
Sbjct: 813  QIISGNRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFYSGLTPPEFLFHAISGREGLVDT 872

Query: 994  AVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDAL 1053
            AVKT+ +GY+ R L+K+LE L   YD +VR++   IVQF YG DG+D +           
Sbjct: 873  AVKTAETGYMSRRLMKSLEDLSSQYDSTVRNSSNGIVQFTYGGDGLDPYDM--------- 923

Query: 1054 AARERGRGRGRNKFCDKGSHTFVMGRN-----------------------QEMIYKKCSG 1090
                 G  R  N F  +  H F +  N                         +I     G
Sbjct: 924  ----EGDARPVN-FKRQWDHAFNITFNIKDKSLLPYEIIDLVNSILEPLEDRLIRYDNVG 978

Query: 1091 QL---------------DASNAYIMELPDALKDNAEKFAD-------------------K 1116
            ++               DA  AY   L D + D AE+ A                     
Sbjct: 979  KILPEEDFDKIEYIDQNDAERAYYQSLRDFVTDKAEQLAQIREHRGLRTFFTRPDSEDIL 1038

Query: 1117 FLSNEMAK--------------QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMT 1162
            F S+E A               + FL+   +K+  +  +PG  VG + +QS+GEP TQMT
Sbjct: 1039 FDSDESAVNAVDQLLKISSKTIEKFLEQSLYKYSKAKVEPGTAVGAIGAQSIGEPGTQMT 1098

Query: 1163 LNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            L TFH AG   MNVTLG+PR++EI+  ASK I TP+I   L+
Sbjct: 1099 LKTFHFAGVASMNVTLGVPRIKEIIN-ASKTISTPIINSVLV 1139


>gi|189192955|ref|XP_001932816.1| DNA-directed RNA polymerase III subunit RPC1 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
 gi|187978380|gb|EDU45006.1| DNA-directed RNA polymerase III subunit RPC1 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
          Length = 1471

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 295/944 (31%), Positives = 453/944 (47%), Gaps = 179/944 (18%)

Query: 335  KVIVARWMNLQQSVNVLFD----GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYA 390
            ++++ +W  LQ  + +  +    G    G +    G  Q L+ K G FRQ L GKRV+++
Sbjct: 319  QILMEQWDFLQLQIAMYINSDAPGLKQQGLQKTMRGFSQRLKGKGGRFRQNLSGKRVDFS 378

Query: 391  CRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLD- 449
             R+VI PDP L+++E+ +P   A  LTYPE+VT +N+ KLR  + NGA+ +PGA + L  
Sbjct: 379  GRTVIGPDPNLSIDEVAVPQRIAKNLTYPEKVTRYNIEKLRRLVRNGAQKYPGANYILTG 438

Query: 450  --------KLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGD 501
                    K+S + L  NK  R+    K    R  I            G +V RH++DGD
Sbjct: 439  QGPNKDPIKISLIALSRNKGERLDFTAK----RLKI------------GDIVERHIEDGD 482

Query: 502  VVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRA 561
            +VL NRQP+LHK SI++H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +R 
Sbjct: 483  IVLFNRQPSLHKLSILSHRAKI-RPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEART 541

Query: 562  EAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSG 621
            EA  ++        P NG P+ + IQD I +A LL+ K+ F +R  FCQ++       +G
Sbjct: 542  EATELMGVKYNLATPKNGTPIIAAIQDFITAAYLLSNKNNFFDRKTFCQIV---NYMFNG 598

Query: 622  LGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERG 681
             G+F    G++  I     ++ P  P IWKP+ LWTGKQV   ++               
Sbjct: 599  EGAFDPDTGKKHPI-----DIPP--PVIWKPQALWTGKQVFNLLMR-------------- 637

Query: 682  GKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNK 741
               P    +   N +    + K                         G PG+  +  +N 
Sbjct: 638  ---PNKGCRVLINLEAACKQFK-------------------------GTPGQAPDLNEN- 668

Query: 742  SKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLF 798
                   +  L+I  ++++ GV+DKA   D     + + +   +G + A   ++ LS+L 
Sbjct: 669  -------DAYLVIRNSEVMCGVMDKATVGDGKKDSVFYVMMRDFGPDHAVQGMNRLSKLS 721

Query: 799  TVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKS 858
              +L  +GF+ G+ D +   DK   +K               + L  E  A+ D +    
Sbjct: 722  ARWLTNNGFSLGISD-VTPGDKLNMKK---------------QLLVQEAYAQCDKLISDF 765

Query: 859  EIEKAMRGGGDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWIS--LMTT 914
               K     G  A    + ++   L+  +  +  +  E LS          W S  LM  
Sbjct: 766  SNGKLQPDAGCDAEQTMENRIGGILSGVRQAAGEICFEELSR---------WNSPLLMAK 816

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
             G+KGS +N  Q+ + +GQQ + G RV      +TLP F      P + GF+ + F +GL
Sbjct: 817  CGSKGSNINVSQMVASVGQQMIGGARVADGFQHRTLPHFPKAARQPASKGFVSNSFFSGL 876

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
             P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++ G++VQF Y
Sbjct: 877  TPSEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSAHYDDTVRNSSGTVVQFQY 936

Query: 1035 GEDGVD----------VH-----QTSFISKFDALAAR----------ERGRGRGRNKFC- 1068
            G+D +D          VH       +  S +D   +           E      RNK+  
Sbjct: 937  GDDNLDPVDMEGKAKPVHFDRTFSHAVTSTWDNAESSLTPQEVRDITESKLNTERNKYTR 996

Query: 1069 ---------------DKGSHTFVMGRN-----QEMIYKKCSGQLDASNAYIMELPDALKD 1108
                           D G       R+     Q+ I+KK   +L+ +  ++  +  +++D
Sbjct: 997  YKLDGVTQLDYRDPSDDGIDQHESLRDFLDTVQDYIFKKAK-KLEDTLTWLGVVQTSVED 1055

Query: 1109 NAEKFAD--KF-LSNEMAK------QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPST 1159
              +  AD  K+ L++ +AK        F+ L   K+  S  QPG  VG + +QS+GEP T
Sbjct: 1056 GKQSPADAEKYSLADGIAKISRSALDTFIALCWSKYHRSRVQPGHAVGAIGAQSIGEPGT 1115

Query: 1160 QMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            QMTL TFH AG   M++T G+PR++EI+  AS  I TPVI C L
Sbjct: 1116 QMTLKTFHFAGVAGMSITQGVPRIKEIIN-ASSTISTPVIDCEL 1158


>gi|169597423|ref|XP_001792135.1| hypothetical protein SNOG_01497 [Phaeosphaeria nodorum SN15]
 gi|160707519|gb|EAT91146.2| hypothetical protein SNOG_01497 [Phaeosphaeria nodorum SN15]
          Length = 1473

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 299/936 (31%), Positives = 457/936 (48%), Gaps = 162/936 (17%)

Query: 335  KVIVARWMNLQQSVNVLFD----GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYA 390
            ++++ +W  LQ  + +  +    G    G +    G  Q L+ K G FRQ L GKRV+++
Sbjct: 319  QILMEQWDFLQLQIAMYINSDAPGLKQQGLQKTMRGFSQRLKGKGGRFRQNLSGKRVDFS 378

Query: 391  CRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDK 450
             R+VI PDP L+++E+ +P   A  LTYPE+VT +N+ KL+  ++NGA  +PGA + L  
Sbjct: 379  GRTVIGPDPNLSIDEVAVPQRVAKILTYPEKVTRYNIKKLQKLVLNGANKYPGANYILKD 438

Query: 451  LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPT 510
            L   +  P K   I++ R     +G  +Q G  +   F G +V RHL+DGD+VL NRQP+
Sbjct: 439  LGPDQ-DPRKVSLIALSRH--DKKGDRLQ-GPAAALRF-GDVVERHLEDGDIVLFNRQPS 493

Query: 511  LHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNAN 570
            LHK SI++H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +R EA  ++   
Sbjct: 494  LHKLSILSHRAKI-RPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEATELMGVK 552

Query: 571  NQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPG 630
                 P NG P+ + IQD I +A +L+ K  F +R  FCQ++       +G G++    G
Sbjct: 553  YNLATPKNGTPIIAAIQDFITAAFILSNKSNFYDRRTFCQIV---NYMFTGEGAYDPDTG 609

Query: 631  QRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
            + + I     E+ P  P IWKP+ LWTGKQV   ++      RP                
Sbjct: 610  KYLPI-----EIPP--PVIWKPQALWTGKQVFNLLM------RP---------------- 640

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
                 +KQS    N    L    K +K   G+  ++ E                   ++ 
Sbjct: 641  -----NKQSRVLVN----LEAGCKQYKPVQGRAPDLDE-------------------NDA 672

Query: 751  KLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             L+I  ++++ GV+DK+   D     + + +   +G   A   ++ L+RL   +L  +GF
Sbjct: 673  YLIIRNSEVMCGVMDKSTVGDGKKESVFYVMMRDFGPEHAVQGMNRLARLSARWLTNNGF 732

Query: 808  TCGVDDLL---ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAM 864
            + G+ D+    +L  K+                   +AL  E  A+ D +    +  K  
Sbjct: 733  SLGISDVTPGEVLNQKK-------------------QALVEEAYAKCDKLIKDFKEGKLQ 773

Query: 865  RGGGDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWIS--LMTTSGAKGS 920
            R  G       ++++   L+  +  +  +  E LS          W S  LM   G+KGS
Sbjct: 774  RAAGCDEEQTMEVQIGGILSGVRQAAGDICFEELSR---------WNSPLLMAKCGSKGS 824

Query: 921  KVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYY 980
             +N  Q+ + +GQQ + G RV      +TLP F      P A GF+ + F +GL P E+ 
Sbjct: 825  NINVSQMVASVGQQMIGGARVADGFHHRTLPHFPKAARQPAAKGFVSNSFYSGLTPSEFI 884

Query: 981  FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE---D 1037
            FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++ G++VQF YG+   D
Sbjct: 885  FHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDDTVRNSSGTVVQFQYGDDNLD 944

Query: 1038 GVDVHQTSFISKFD---------------------ALAARERGR-GRGRNKF----CDKG 1071
             VD+   +    FD                     A+ A    +    RNK+     D  
Sbjct: 945  PVDMEGRAQPVAFDRTFSHAITSTWDNSEPSLTPEAVRAHTLAKLNTERNKYPRFKLDGI 1004

Query: 1072 SHTFVMGRNQEMIYKKCSGQ--LDASNAYI---------------MELPDALKDNAEKFA 1114
            +      ++   I +K S +  LD    YI               + L D     +E   
Sbjct: 1005 TPLEYNDKSDSSIDQKESLRDFLDTVQTYISGKAQKLETTLVHLGVSLEDCSTKRSEADR 1064

Query: 1115 DKF-LSNEMAK------QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFH 1167
            +K+ L++ +AK        F+ L   K+  S  QPG  VG + +QS+GEP TQMTL TFH
Sbjct: 1065 EKYTLADGIAKISQTALDTFIDLCLTKYHRSRVQPGHAVGAIGAQSIGEPGTQMTLKTFH 1124

Query: 1168 LAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
             AG   M++T G+PR++EI+  AS  I TPVITC L
Sbjct: 1125 FAGVAGMSITQGVPRIKEIIN-ASSTISTPVITCVL 1159



 Score = 41.6 bits (96), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 24/44 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TCG++   C GHFGHI L +P ++      +  +L  IC  C
Sbjct: 78  CGTCGEKLDKCNGHFGHIKLALPAFHVGYLKHIIEVLNCICKDC 121


>gi|330914134|ref|XP_003296505.1| hypothetical protein PTT_06631 [Pyrenophora teres f. teres 0-1]
 gi|311331266|gb|EFQ95369.1| hypothetical protein PTT_06631 [Pyrenophora teres f. teres 0-1]
          Length = 1472

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 293/939 (31%), Positives = 451/939 (48%), Gaps = 168/939 (17%)

Query: 335  KVIVARWMNLQQSVNVLFD----GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYA 390
            ++++ +W  LQ  + +  +    G    G +    G  Q L+ K G FRQ L GKRV+++
Sbjct: 319  QILMEQWDFLQLQIAMYINSDAPGLKQQGLQKTMRGFSQRLKGKGGRFRQNLSGKRVDFS 378

Query: 391  CRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDK 450
             R+VI PDP L+++E+ +P   A  LTYPE+ T +N+ KLR  + NGA+ +PGA + L  
Sbjct: 379  GRTVIGPDPNLSIDEVAVPQRIAKNLTYPEKATRYNIEKLRRLVRNGAQKYPGANYILTD 438

Query: 451  LSTMRLPPNKKM----RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVN 506
                + P    +    R+  G +LD +   +            G +V RH++DGD+VL N
Sbjct: 439  QGPNKDPGKISLIALSRVDKGDRLDYTAKRLKI----------GDIVERHIEDGDIVLFN 488

Query: 507  RQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNI 566
            RQP+LHK SI++H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +R EA  +
Sbjct: 489  RQPSLHKLSILSHRAKI-RPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEATEL 547

Query: 567  VNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFT 626
            +        P NG P+ + IQD I +A LL+ K+ F +R  FCQ++       +G G+F 
Sbjct: 548  MGVKYNLATPKNGTPIIAAIQDFITAAYLLSNKNNFFDRKTFCQIV---NYMFNGEGAFD 604

Query: 627  GKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQ 686
               G++  I     ++ P  P +WKP+ LWTGKQV   ++                  P 
Sbjct: 605  PDTGKKHPI-----DIPP--PVVWKPQALWTGKQVFNLLMR-----------------PN 640

Query: 687  DFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKE 746
               +   N              L    K +K   GK  ++ E                  
Sbjct: 641  KECRVLIN--------------LEAACKQYKGTPGKAPDLNE------------------ 668

Query: 747  LSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQ 803
              +  L+I  ++++ GV+DKA   D     + + +   +G + A   ++ LS+L   +L 
Sbjct: 669  -DDAYLVIRNSEVMCGVMDKATVGDGKKDSVFYVMMRDFGPDHAVQGMNRLSKLSARWLT 727

Query: 804  MHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
             +GF+ G+ D +   DK   +K               + L  E  A+ D +       K 
Sbjct: 728  NNGFSLGISD-VTPGDKLNTKK---------------QLLVQEAYAQCDKLISDFSNGKL 771

Query: 864  MRGGGDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWIS--LMTTSGAKG 919
                G  A    + K+   L+  +  +  +  E LS          W S  LM   G+KG
Sbjct: 772  QPDAGCDAEQTMENKIGGILSGVRQAAGEICFEELSR---------WNSPLLMAKCGSKG 822

Query: 920  SKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEY 979
            S +N  Q+ + +GQQ + G RV      +TLP F      P + GF+ + F +GL P E+
Sbjct: 823  SNINVSQMVASVGQQMIGGARVADGFQHRTLPHFPKAARQPASKGFVSNSFFSGLTPSEF 882

Query: 980  YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
             FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++ G++VQF YG+D +
Sbjct: 883  IFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDNTVRNSSGTVVQFQYGDDNL 942

Query: 1040 D----------VH----------------QTSFISK-----FDALAARERGR-------G 1061
            D          VH                ++S   +      +A    ER R       G
Sbjct: 943  DPVDMEGKAKPVHFDRTFSHAVTSTWNNAESSLTPQEVRDITEAKLNTERNRYPRYKLDG 1002

Query: 1062 RGRNKFCD--------KGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKF 1113
              R  + D        K S    +   Q+ I+ K   +L+ +  ++  +  ++KD  +  
Sbjct: 1003 VTRLDYRDTTDDGIDQKESLRDFLDTVQDYIFNKAQ-KLEQTLTWLGVVQPSVKDRKQSP 1061

Query: 1114 AD--KF-LSNEMAK------QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLN 1164
            AD  K+ LS+ +AK        F+ L   K+  S  QPG  VG + +QS+GEP TQMTL 
Sbjct: 1062 ADAEKYSLSDGIAKISHSALDTFITLCLTKYHRSRVQPGHAVGAIGAQSIGEPGTQMTLK 1121

Query: 1165 TFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            TFH AG   M++T G+PR++EI+  AS  I TPVI C L
Sbjct: 1122 TFHFAGVAGMSITQGVPRIKEIIN-ASSTISTPVIDCEL 1159


>gi|425778039|gb|EKV16185.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
 gi|425781413|gb|EKV19382.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
          Length = 2075

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 321/1054 (30%), Positives = 493/1054 (46%), Gaps = 189/1054 (17%)

Query: 210  PGTQDTAARRHQKGSGAVPS---GFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFIS 266
            P ++D       +  GA P     FKK +D  +    P  V  + +K+ +++ EL     
Sbjct: 831  PISKDVFDNSFLEARGANPDVEKHFKKAQDDMN----PLRVLKLFKKMSDSDCELIGMNP 886

Query: 267  DMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQANIYLAN 325
                    K+A   +F    +  PP+  R PS G D    E   T  L  ++Q+NI L N
Sbjct: 887  --------KEARPEMFLWQFIPAPPVCIR-PSVGQDGASTEDDLTAKLGDIVQSNINLKN 937

Query: 326  AYVN-QPDNAKVIVARWMNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQKL 382
            A +   P    +    +M LQ +V +  D  G N A       G  Q L+ K+G FR  L
Sbjct: 938  ALLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRLKGKQGRFRGNL 997

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
             GKRV+++ R+VISPDP L V+E+ +P   A  +TYPE VT +N  KL+  I NG+   P
Sbjct: 998  SGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPELVTRYNKEKLQQRICNGSNKWP 1057

Query: 443  GATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDV 502
            GA   + K +  R    + ++ S     +T R A        D   EG +V RHL+DGD+
Sbjct: 1058 GANLIVKKGTGFR----QMLKYS-----NTQRMA--------DALQEGDLVERHLEDGDI 1100

Query: 503  VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
            VL NRQP+LHK SI++H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAE
Sbjct: 1101 VLFNRQPSLHKLSILSHFAKI-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAE 1159

Query: 563  AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL-LYSSGVSSSG 621
            A  ++   N    P NG+P+ S IQD I +A +L+ KD F +R  F Q+ LY  G  +  
Sbjct: 1160 AMELMGVKNNLATPKNGEPIISAIQDFISAAYVLSSKDNFFDRASFTQICLYMLGPET-- 1217

Query: 622  LGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERG 681
               F   P                 P++ KP+ +WTGKQV   ++      RP       
Sbjct: 1218 --RFDLPP-----------------PSVLKPQMMWTGKQVFNILM------RP------- 1245

Query: 682  GKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNK 741
                             SD    +     +  KM KD          G+P          
Sbjct: 1246 ---------------NSSDPVMVNLDAACREFKMPKD----------GRP---------- 1270

Query: 742  SKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLF 798
             K+ + ++  L+I  ++++ GV+DK+         + + +   +G   A   ++ LS+L 
Sbjct: 1271 -KDLDPNDGWLVIRNSEVMCGVMDKSTIGSGKKDNVFYIMLRDFGPPAAAEGMNRLSKLS 1329

Query: 799  TVFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGA-EIDP 853
              +    GF+ G+ D+     +++ K    +      +E+  +     LE   G  E+  
Sbjct: 1330 ARWFTNIGFSIGIGDVYPSAGLVQSKNDLVEAAYSQCDEVIAKYKAGTLEKYPGCDELQT 1389

Query: 854  I--KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
            +  ++   + K  +  GD  +         QL+K+ S  +                    
Sbjct: 1390 MENQISGILSKVRQQAGDECI--------KQLSKYNSPLI-------------------- 1421

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            M TSG+KGS +N  Q+ + +GQQ + G+RV      +TLP F      P + GF+ + F 
Sbjct: 1422 MATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSFF 1481

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            +GL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++  +IVQ
Sbjct: 1482 SGLEPPEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSMYDDTVRNSSAAIVQ 1541

Query: 1032 FCYGEDGVD-----------------VHQTSFISKFDA--------LAARERGRGRGRNK 1066
            F YG+D +D                 +H  S     D         +   E+   + R K
Sbjct: 1542 FQYGDDKLDPVDMEGKAKPVHFDRTFIHSESTTYNNDERSLLPKEIMEVCEQMLSKERAK 1601

Query: 1067 FCDK---GSHTFVMGRNQEMI--YKKCSGQLDASNAYIMELPDALK------DNAEKFAD 1115
               K   G+    M R+   I  ++     LD+   Y+ +  D L       D +++ + 
Sbjct: 1602 LNRKDLLGNDLAYMDRSDHGIDQFESARDFLDSIQEYVQKRADKLISRGGDFDPSDQRSR 1661

Query: 1116 KFLSNEMAKQD-----FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
            K L +     D     F+     K+  +  +PG  VG + +QS+GEP TQMTL TFH AG
Sbjct: 1662 KGLDHTGKLTDTTLRAFITACLLKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAG 1721

Query: 1171 RGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
               M++T G+PR++EI+  ASK+I TPV+ C L+
Sbjct: 1722 VAGMSITQGVPRIKEIIN-ASKEISTPVVACELV 1754



 Score = 46.6 bits (109), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C TCG     C GHFGH+ L++P ++   F  + ++L+ IC  C +    +A RR   + 
Sbjct: 705 CATCGNNLKDCNGHFGHVRLILPSFHVGYFKRVISILQEICKECSNILLPEAERRSYLRE 764

Query: 58  VRK 60
           +R+
Sbjct: 765 MRR 767


>gi|121706250|ref|XP_001271388.1| DNA-directed RNA polymerase III largest subunit, putative
            [Aspergillus clavatus NRRL 1]
 gi|119399534|gb|EAW09962.1| DNA-directed RNA polymerase III largest subunit, putative
            [Aspergillus clavatus NRRL 1]
          Length = 1449

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 307/1000 (30%), Positives = 470/1000 (47%), Gaps = 177/1000 (17%)

Query: 265  ISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQAN 320
            ISD   +  G   K+A   +F    +  PP+  R PS G D+   E   T  L  ++Q+N
Sbjct: 247  ISDTDCELLGLNPKEARPEMFLWQFIPAPPVCIR-PSVGQDAASTEDDLTAKLGDIVQSN 305

Query: 321  IYLANAYVN-QPDNAKVIVARWMNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGL 377
            I L N+ +   P    +    +M LQ +V +  D  G N A       G  Q L+ K+G 
Sbjct: 306  INLKNSLLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRLKGKQGR 365

Query: 378  FRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIING 437
            FR  L GKRV+++ R+VISPDP L V+E+ +P   A  +TYPE V+ +N  KL+  + NG
Sbjct: 366  FRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVSRYNKEKLQQRVRNG 425

Query: 438  AEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
             +  PGA + + K S  +L         I  +L                  EG ++ RH+
Sbjct: 426  TKKWPGANYIIKKGSDFKLFLKYGNLNMIADQLQ-----------------EGDVIERHI 468

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            +DGD+VL NRQP+LHK SI++H  +V +  +T R++   C+ YNADFDGDEMN+H PQ E
Sbjct: 469  EDGDIVLFNRQPSLHKLSILSHFAKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTE 527

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL-LYSSG 616
             +RAEA  ++   N    P NG+P+ S IQD I +A +L+ KD F +R  F Q+ LY  G
Sbjct: 528  EARAEAMELMGVKNNLATPKNGEPIISAIQDFISAAYVLSSKDNFFDRRSFTQICLYMLG 587

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
              +     F   P                 P+I KP+ +WTGKQV   ++      RP  
Sbjct: 588  PET----RFDLPP-----------------PSILKPQMMWTGKQVFNILM------RP-- 618

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                                             +K + +  +     +E    K G  K+
Sbjct: 619  ---------------------------------NKDDPVMVNLDAACREYKPPKDGRPKD 645

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSA 793
             + N        +  L+I  ++++ GV+DK+         + + +   YG   A   ++ 
Sbjct: 646  LDPN--------DGWLVIRNSEVMCGVMDKSTIGSGKKDNVFYIMLRDYGPPAAAEGMNR 697

Query: 794  LSRLFTVFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGA 849
            LS+L   +    GF+ G+ D+     +++ K    ++     +E+  +     LE   G 
Sbjct: 698  LSKLSARWFTNMGFSIGITDVYPSEGLVRSKNELVESAYAQCDEVIAKYKAGTLEKYPGC 757

Query: 850  -EIDPI--KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
             E+  +  +L   + K  +  GD  +A        QL+K+ S  +               
Sbjct: 758  DELQTMENQLSGILSKVRQQAGDECIA--------QLSKYNSPLI--------------- 794

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
                 M TSG+KGS +N  Q+ + +GQQ + G+RV      +TLP F      P + GF+
Sbjct: 795  -----MATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFV 849

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
             + F +GL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++ 
Sbjct: 850  RNSFFSGLEPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSS 909

Query: 1027 GSIVQFCYGEDGVD-----------------VHQTSFISKFDA--------LAARERGRG 1061
             +IVQF YG+D +D                 +H  S     D         +   E    
Sbjct: 910  DAIVQFQYGDDLLDPVDMEGKAKPVHFDRTFIHSESITYDNDERSLLPHEIMEVCEEMLS 969

Query: 1062 RGRNKFCDK---GSHTFVMGRNQEMI--YKKCSGQLDASNAYIMELPDALK------DNA 1110
            + R K   +   G+    M R+   I  ++     LD+   YI    D L       D +
Sbjct: 970  KERAKLVREDLMGNKLGYMDRSDHGIDQFESARDFLDSIQQYISTKADKLISRGGDFDPS 1029

Query: 1111 EKFADKFLSN-----EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNT 1165
            ++ + K L++     E   + F+     K+  +  +PG  VG + +QS+GEP TQMTL T
Sbjct: 1030 DERSQKGLNHTGKLTEKTLRTFIAACLLKYKRAQVEPGHAVGAVGAQSIGEPGTQMTLKT 1089

Query: 1166 FHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLV 1205
            FH AG   M++T G+PR++EI+  ASK I TPVI+C L+ 
Sbjct: 1090 FHFAGVAGMSITQGVPRIKEIIN-ASKAISTPVISCDLVT 1128



 Score = 49.3 bits (116), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C+TCG    +C GHFGH+ LV+P ++   F  + ++L+ IC  C      +A RR   + 
Sbjct: 78  CQTCGGSLQVCNGHFGHVRLVLPAFHVGYFKRVISILQEICKECSRILLPEAERRAFLRE 137

Query: 58  VRK 60
           +R+
Sbjct: 138 MRR 140


>gi|224060165|ref|XP_002300065.1| predicted protein [Populus trichocarpa]
 gi|222847323|gb|EEE84870.1| predicted protein [Populus trichocarpa]
          Length = 1394

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 320/1018 (31%), Positives = 476/1018 (46%), Gaps = 184/1018 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V  + +++ E + EL      +  QG  +K       +  + VPPI  R PS   
Sbjct: 223  LNPVRVLSLFQRMVEEDCEL------LYLQGRPEK-----LIITTIAVPPISIR-PSVFT 270

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G    E+  T  L +++Q N  L    +         +  W  LQ +V  L+   +   
Sbjct: 271  EGSQSNENDITERLKQIIQFNAKLRLELLEGRRTGIKYLIGWDELQ-AVVTLYINSDVRI 329

Query: 360  QRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFAL 414
              DM      SG  Q L  K+G FRQ L GKRV +  R+VISPDP L + E+ IP + A 
Sbjct: 330  PLDMQVGRPLSGFVQRLTGKQGRFRQNLAGKRVEFTGRTVISPDPNLKITEVAIPIHMAR 389

Query: 415  RLTYPERVTPWNVVKLRDSIINGAEIHPGA--THYLDKLSTMRLPPNKKMRISIGRKLDT 472
             LTYPERVT  N+ KLR  + NG+  +PGA    Y D  S M L  N + RI+   K   
Sbjct: 390  ILTYPERVTHHNIEKLRQCVNNGSYKYPGARMVTYPDGSSKM-LTGNYRKRIAEELK--- 445

Query: 473  SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 532
                             G +V+RHL+DGDVVL NRQP+LH+ SIM H  R++   +TLR 
Sbjct: 446  ----------------SGCIVHRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW-RTLRF 488

Query: 533  HYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVS 592
            + + C+ YNADFDGDEMN+H PQ E +R EA+ ++   N    P NG+ L +  QD + S
Sbjct: 489  NESVCNPYNADFDGDEMNMHVPQTEEARTEAFLLMGVQNNLCTPKNGEILVASTQDFLTS 548

Query: 593  AALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKP 652
            + L+T+KDTF +R  F           S + S+       V         LP  P++ KP
Sbjct: 549  SFLITRKDTFYDRAAF-----------SLMCSYMNDGMDLV--------DLP-TPSVLKP 588

Query: 653  EPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKT 712
              LWTGKQ+ + +L                  P    +   N      ++KN     S+ 
Sbjct: 589  IELWTGKQLFSVLLR-----------------PHANVRVYVNLIL---KEKN----YSRP 624

Query: 713  NKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQFAD 771
            NK HK                       K +E     +  + ++N +L+ G + KA   +
Sbjct: 625  NKEHK-----------------------KERETMCPNDGYVYFRNSELISGQLGKATLGN 661

Query: 772  Y---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHL 828
                GL   +   Y +  A T ++ L++L   ++  HGF+ G+DD+   K    E+   +
Sbjct: 662  GNKDGLYSILLRDYNAYAAATCMNRLAKLSARWIGNHGFSIGIDDVQPGKKLIDEKGKTI 721

Query: 829  HGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTS 888
                  G R   + +   +G  +           A++ G DA     + ++T +LNK   
Sbjct: 722  SN----GYRHCNKLIADYNGGRL-----------ALKSGCDAT-QTLETEITERLNK--- 762

Query: 889  SSVINELLSEGLLKPTG-KNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSG 947
               + E   +  +K    +N   +M+  G+KGS +N  Q+ + +GQQ + G R P     
Sbjct: 763  ---LREEAGDVCMKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGSRAPDGFID 819

Query: 948  KTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL 1007
            ++LP F      P A GF+ + F +GL   E++FH M GREGLVDTAVKT+ +GY+ R L
Sbjct: 820  RSLPHFPRKSKTPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMARRL 879

Query: 1008 IKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVH----QTSFISKFDALAARERGR-GR 1062
             K LE L + YD +V+DA G IVQF YG+DG+D      +      FD L  + +   G 
Sbjct: 880  SKGLEDLCVQYDNTVQDAGGGIVQFLYGDDGLDPAIMEGKAGVPLNFDRLFMKVKATCGA 939

Query: 1063 GRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDA--SNAY-----------------IMELP 1103
              +++      + ++   Q ++ K  +G LD   S ++                 +M+L 
Sbjct: 940  EEDEYLSPSDISNIV---QSLLLKH-NGTLDGICSESFRKSLSSFLGDQAKRLECLMKLV 995

Query: 1104 DALK-----------------DNAEKFADKFLS-NEMAKQDFLKLVKHKFVLSLAQPGEP 1145
            D ++                  N EK A K     E   + FLK    ++V    +PG  
Sbjct: 996  DGVEVENFENIKNVEGLTGISKNTEKIAQKVSGITEKQLEVFLKTCLDRYVWKRIEPGTA 1055

Query: 1146 VGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            +G + +QS+GEP TQMTL TFH AG   MN+T G+PR++EI+   +K I TP+IT  L
Sbjct: 1056 IGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN-GAKRISTPIITVEL 1112



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 5/60 (8%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG     CPGHFG+++LV+PVYN    + +  +LK IC  C     SR  V++ +RK
Sbjct: 76  CQTCGGSFTDCPGHFGYLNLVLPVYNVGYLSTILDILKCICKSC-----SRVLVDEKLRK 130


>gi|219121691|ref|XP_002181195.1| rna polymerase C 157 kDa [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407181|gb|EEC47118.1| rna polymerase C 157 kDa [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1281

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 294/945 (31%), Positives = 448/945 (47%), Gaps = 152/945 (16%)

Query: 282  FFLGVVLVPPIKFRLPSKG---GDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIV 338
              L  +LVPP+  R PS     G    E   TV L +++  N+ L  A +  P   + I+
Sbjct: 210  LILQSILVPPVPIR-PSVAMDVGGGSNEDDLTVKLQEIIDVNVALELALMKGP-QTRTIM 267

Query: 339  ARWMNLQQSVNVLFDGKNAAGQRDMAS----GICQLLEKKEGLFRQKLMGKRVNYACRSV 394
              W  LQ  V    +G+    QR + S    G+CQ L+ K+G FR  L GKRV+++ R+V
Sbjct: 268  EEWDFLQVQVAQYINGEMPGLQRPIGSKPMRGLCQRLKGKQGRFRGNLSGKRVDFSARTV 327

Query: 395  ISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM 454
            ISPDP L V+++G+P   A  +TYPERV+ +N+ KLR  + NG ++HPGA       + +
Sbjct: 328  ISPDPNLRVDQVGVPERVAKTMTYPERVSRYNIEKLRQRVRNGPDVHPGA-------NLI 380

Query: 455  RLPPNKKMR-ISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHK 513
            R+     ++ +S G +   ++           N   G +V RH++D DVVL NRQP+LHK
Sbjct: 381  RMKDGSFVKSLSFGDRELVAK-----------NLRYGDVVERHMEDDDVVLFNRQPSLHK 429

Query: 514  PSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQY 573
             SIMAH  +V++  KT R +   C+ YNADFDGDEMN+H PQ E +R EA  ++   +  
Sbjct: 430  VSIMAHRAKVMEW-KTFRFNTCVCAPYNADFDGDEMNMHLPQTEEARTEASLLMGVKHNL 488

Query: 574  VRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLL--YSSGVSSSGLGSFTGKPGQ 631
              P NG+PL +  QD + ++ +LT++D F  R++FCQL+  YS                 
Sbjct: 489  TTPRNGEPLVAASQDFLSASYMLTQRDRFFTREQFCQLVSYYSDA--------------- 533

Query: 632  RVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKT 691
                  SE   +P  P I +P  LWTGKQV   +L      RP                 
Sbjct: 534  ------SEDIDIP-FPTILRPVELWTGKQVFGMML------RP----------------- 563

Query: 692  RFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEK 751
                                          +K  V+     +EK    NK   K    + 
Sbjct: 564  -----------------------------NRKSSVLVSFENKEKNYTTNKYFCK---NDG 591

Query: 752  LLIYKN-DLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH-G 806
             + ++N +LV G I K    D    GL++ +    G + A + +   ++  + F+  H G
Sbjct: 592  WVAFRNSELVSGNIAKKSIGDGSKSGLLYILLRDCGVHEAASCMDRWAKFCSRFMGGHRG 651

Query: 807  FTCGVDDLLI---LKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
             + G+ D+     L+D +    +  +  E +   +    LEL  G ++  ++   EI   
Sbjct: 652  LSIGISDVTPSARLRDIKHGILSEGYKKERLITPMKQGRLELRPGCDL--LQSLEEILNG 709

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
            + G    +     MK     N   +  ++ E  S+G                    S +N
Sbjct: 710  ILGRLRESAGQEAMKALPWTN---TPRIMAECGSKG--------------------SPLN 746

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ S +GQQ + G R+      + LP F      P A GF+ + F TGL   E++FH 
Sbjct: 747  ISQMISCVGQQAVGGMRIQDGFVNRCLPHFEYHSLIPSAKGFVANSFYTGLTATEFFFHA 806

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            M GREGLVDTAVKT+ +GY+ R L+K LE L + YD SVR+++ ++VQF YG+DG++   
Sbjct: 807  MGGREGLVDTAVKTAETGYMARRLMKALEDLSLQYDSSVRNSENTVVQFTYGDDGLN--- 863

Query: 1044 TSFISKFDALAARERGRGR-GRNKFCDK----GSHTFVMGRNQEMIYKKCSGQLDASNAY 1098
             + +   D     ER R    +   C       +        +++   +    L     +
Sbjct: 864  PNMMENNDRPVDFERLRLHISQTTPCPTEDCLSAAALSTTVEKKLAEPRFQALLPTGRVF 923

Query: 1099 IMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPS 1158
            + E+ D     AE    +    ++  +  L     K +L+  +PGE VG + +QS+ EP 
Sbjct: 924  MQEIRDFFNSLAENQNSRMTETQL--ELLLTEALDKCMLAYVEPGEAVGAIGAQSISEPG 981

Query: 1159 TQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            TQMTL TFH +G   MNVTLG+PRL+EI+  A+K I TP+IT  L
Sbjct: 982  TQMTLKTFHFSGISSMNVTLGVPRLKEIIN-AAKLISTPIITAKL 1025


>gi|164428077|ref|XP_956006.2| hypothetical protein NCU01638 [Neurospora crassa OR74A]
 gi|18307453|emb|CAD21513.1| probable DNA-directed RNA polymerase I [Neurospora crassa]
 gi|157072001|gb|EAA26770.2| hypothetical protein NCU01638 [Neurospora crassa OR74A]
          Length = 1701

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 262/733 (35%), Positives = 377/733 (51%), Gaps = 85/733 (11%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC   Q  CPGH GHI+L VPVY+P+  +  Y LL+  C +CH F+  RRE+ +    
Sbjct: 62  CTTCNLGQSQCPGHPGHIELPVPVYHPVFMDQAYRLLRAQCVYCHRFRLPRREIHRYSCM 121

Query: 61  LELIIKGDIIAAKSLD----------------LDLPSE--------SSNPEDSDVSNKSS 96
           L L+  G +  A+ +D                 D+P           +N  DS +  + +
Sbjct: 122 LRLLQCGLLKEAQMIDSFGESEFGSAIRQFQLADVPEMEDDEAEEEGNNLNDSTIRQREA 181

Query: 97  CSMVTPRGNYDNVRNLKPQEWTSLQFAEAKLALL-QFLK--IETTKCGNCKAKNPRISKP 153
                 R     V      +      A+ + AL+ +FL   I+  KC  C   +P   K 
Sbjct: 182 YVRAVLRDYRTKVTMRDINKGKHEGAADMRRALVKEFLAAIIKDKKCRTCDGISPVYRKD 241

Query: 154 TFGWIHMNGMPHADIRANLIRGCNLGETFS--GGEEEK--DLGASSDVDAPETHSFNGTF 209
            +  I    +   +  A    G    +  +  GG+++   D    +D+++  + S N   
Sbjct: 242 RYTKIFERDLTQKEKAAMAQAGRKRADALAMKGGKKKNHDDDEGIADIESTASESDNSEG 301

Query: 210 PGTQ---DTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI- 265
            G +   +        GS        +++ L    +   +VK+ +  L++ E E+ S + 
Sbjct: 302 EGEELDENGDVVMADAGSKTKAKEKAEKRALPQRYISSLEVKERLNFLFQKEQEIVSLLF 361

Query: 266 SDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA- 324
           S   +    K     +FF+  +LVPP KFR  ++ GD V E  Q  L   +L+ +  +A 
Sbjct: 362 SSKPRPKHAKPMTADMFFIQTLLVPPNKFRPEARMGDQVTEAQQNSLYKLILRGSSMVAQ 421

Query: 325 -------NAYVNQPDNAK------VIVARWMNLQQSVNVLFDG-----KNAAGQRDMASG 366
                   A  N P++ +       +   W  LQ +VN L D      + AAG+R+   G
Sbjct: 422 ISREVSETAKGNAPEDGRRARDINALYQAWTQLQDAVNSLIDRDKNPVQGAAGKRN-EDG 480

Query: 367 ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
           I Q LEKKEGLFR+ +MGKRVN+A RSVISPDP +  +EIG+PP FA +LTYPE VT  N
Sbjct: 481 IKQKLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETSEIGVPPVFARKLTYPEPVTSHN 540

Query: 427 VVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIV-QPGKDSD 485
              L++++ NG E  PGA+          +       I++  K    R A+  Q    ++
Sbjct: 541 YHDLKNAVQNGMEKWPGASA---------IEMENGQIINLRNKSSEERQALANQLLAPTN 591

Query: 486 NEFEG---KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNA 542
           N F G   K V+RHL +GDVVL+NRQPTLHKPSIM H VRVL GEKT+RMHYANC+TYNA
Sbjct: 592 NNFSGVRNKKVHRHLTNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNA 651

Query: 543 DFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTF 602
           DFDGDEMN+HFPQ+E++RAEA  + + ++QY+  + G PLR LIQDH+  + +L  KDTF
Sbjct: 652 DFDGDEMNMHFPQNEIARAEALQLADTDHQYISGTAGKPLRGLIQDHLSVSVILCNKDTF 711

Query: 603 LNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI 662
            +R  + QL+Y++    SG             I   + E+LP  PAI KP P WTGKQVI
Sbjct: 712 FDRANYHQLIYAALRPESG------------HIMGDKIELLP--PAIIKPVPRWTGKQVI 757

Query: 663 TAVLNHITRGRPP 675
           T +L +I   +PP
Sbjct: 758 TTILKNI---KPP 767



 Score =  369 bits (948), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 212/484 (43%), Positives = 293/484 (60%), Gaps = 40/484 (8%)

Query: 749  EEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH 805
            EE  + +++ + + G++DK+Q   +  GL+H++ E+YG + AG LLS + RL T +L M 
Sbjct: 791  EEGQVTFRDGEFITGILDKSQLGPSSGGLIHSIHEVYGPSAAGKLLSCMGRLLTRYLAMV 850

Query: 806  GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEI--DPIKLKSEIEKA 863
             F+CG+DDL++    E +RK  +  +  IG  V  + + LE+      DP+ L+  +E+ 
Sbjct: 851  AFSCGMDDLVMTPKGEADRKEKIKAAAHIGLEVAAKYVSLEEQKPTPEDPLLLQ-RLEEV 909

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
            MR   D      D+ M +Q     SS +    L  GL K   KN +  MTTSGAKGS VN
Sbjct: 910  MRN--DKKQENLDLLM-NQRCAQLSSEITKTCLPAGLQKKFPKNQMQSMTTSGAKGSPVN 966

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
               IS +LGQQ LEG+RVP MVSGKTLPSF P+D   RAGG+I+ RFLTG+RPQEYYFH 
Sbjct: 967  ANLISCNLGQQVLEGRRVPVMVSGKTLPSFKPFDTNARAGGYIVQRFLTGIRPQEYYFHH 1026

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGL+DTAVKTSRSGYLQRCLIK +E LK++YD SVRD+DGSI+QF +GEDG+D+ +
Sbjct: 1027 MAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKVAYDTSVRDSDGSIIQFLFGEDGIDISK 1086

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSG------------- 1090
              +++ F+    R          + ++G+      ++ EMI +  +              
Sbjct: 1087 QKYLNDFE-FVLRNLKSELAHLHYSEEGTQALFEHKD-EMIKRMKAAIKSRDTRNPLNPI 1144

Query: 1091 ---------QLDASNAYIMELPDALKDN-----AEKFADKFLSNEMAKQDFLKLVKHKFV 1136
                         S  +  ++   +K+N      EK  D   S  + +++  K++  K++
Sbjct: 1145 ESDVDPALYAFATSENFFEKMTKYVKENKDGLIKEKKGDS--SGIIVRKNAEKILAAKYI 1202

Query: 1137 LSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKT 1196
             SL +PGE VG++A QSVGEPSTQMTLNTFHLAG    NVTLGIPRL+EIL  AS  I T
Sbjct: 1203 RSLVEPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASSKIST 1262

Query: 1197 PVIT 1200
            P +T
Sbjct: 1263 PAMT 1266


>gi|321473720|gb|EFX84687.1| hypothetical protein DAPPUDRAFT_222950 [Daphnia pulex]
          Length = 1387

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 294/961 (30%), Positives = 453/961 (47%), Gaps = 160/961 (16%)

Query: 282  FFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIV 338
              L  V VPP+  R PS   D      E   T+ L++++  N  +    ++    +++I+
Sbjct: 250  MILTRVPVPPVCIR-PSVVSDLKSGTNEDDLTMKLTEIVFLNDVIVKHRLSGA-KSQMIL 307

Query: 339  ARWMNLQQSVNVLFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYACRS 393
              W  LQ    +  + + +    +M     + G+ Q L+ K+G FR  L GKRV+++ R+
Sbjct: 308  EDWDFLQLQCALYINSELSGIPLNMQPKKPSRGLVQRLKGKQGRFRGNLSGKRVDFSGRT 367

Query: 394  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLST 453
            VISPDP L ++++G+P   A  LT+P RV   N+  +R  + NGA++HPGA +  +K S 
Sbjct: 368  VISPDPNLRIDQVGVPELVAKILTFPTRVNEANIDLMRQLVRNGADVHPGANYLQEKGSE 427

Query: 454  MRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHK 513
            ++       R S+ R L                   G ++ RH+ D D+VL NRQP+LHK
Sbjct: 428  LKKFLKYGNRESLARNLKL-----------------GDLIERHMMDEDIVLFNRQPSLHK 470

Query: 514  PSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQY 573
             SIM H  ++L   +T R +   C+ YNADFDGDEMN+H PQ E +RAEA+ ++      
Sbjct: 471  LSIMCHRAKILP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEAWILMGNKFNL 529

Query: 574  VRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRV 633
            V P NG+ L + IQD I  A LLT KD F +R + CQ++ S                   
Sbjct: 530  VTPRNGELLIAAIQDFITGAYLLTLKDAFFDRAKTCQMVAS------------------- 570

Query: 634  LISRSEQEVLPLL--PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKT 691
            +++  E  ++  L  P I KP  LW+GKQ+ + +L      RP          P D  K 
Sbjct: 571  MLAGDEVNMVIKLPPPCIQKPAALWSGKQIFSLIL------RPN---------PGDRIKV 615

Query: 692  RFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEK 751
                  +   KKN+                                      E  +++  
Sbjct: 616  NLRTKGKEYSKKNE--------------------------------------EFCVNDGF 637

Query: 752  LLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFT 808
            LL+  ++++ G +DK+     +   + + +   YG + A   +  L R+ + ++   GF+
Sbjct: 638  LLVRNSEVLAGCVDKSTIGSGSKINIFYVLLRDYGEDFAIQAMWKLCRVASYYMMNRGFS 697

Query: 809  CGVDDL----LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAM 864
             G+ D+     +LK+K+          +E  + + L  L    G   +   L+S+I K +
Sbjct: 698  IGIGDVTPGKTLLKEKQTLLDTGYSKCDEYIRLLTLGQLPCLPGCN-EEESLESKILKEL 756

Query: 865  RGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNF 924
             G  D A      ++      H S+S +                  +M+ SG+KGS +N 
Sbjct: 757  SGIRDQAGEVCKKEL------HPSNSPL------------------VMSKSGSKGSYINI 792

Query: 925  QQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCM 984
             Q+ + +GQQ L GKRVP     ++LP F      P A GF+ + F +GL P E++FH M
Sbjct: 793  SQMIACVGQQALNGKRVPNGFEDRSLPHFKRHSKIPAAKGFVSNSFYSGLTPTEFFFHTM 852

Query: 985  AGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV--- 1041
             GREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR++ G I+QF YG DG+D    
Sbjct: 853  GGREGLVDTAVKTAETGYMQRRLVKSLEDLCCQYDSTVRNSTGEIIQFVYGGDGLDPTYM 912

Query: 1042 ----HQTSFISKFDALAAR----------ERGRGRGRNKFCDKGSHTFVMGRNQEMIYKK 1087
                    F    D + A           +    +  N   D  S   +    Q  +   
Sbjct: 913  EAKDRPVDFQRALDHIKAASPYPDEEPLDDIELQQAFNTIMDTDSFKMLGVDFQHELRVF 972

Query: 1088 CSGQL----DASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPG 1143
               Q+         + ME    L+   EK  ++    ++   +F    K K+  +  +PG
Sbjct: 973  VESQVKRIKKVRQLFKMEGRSLLR--VEKHLERITVGQLV--EFCDFSKEKYERAKIEPG 1028

Query: 1144 EPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
              VG L +QS+GEP TQMTL TFH AG   MN+T G+PR++EI+  ASK I TPVI+  L
Sbjct: 1029 TAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN-ASKAISTPVISTQL 1087

Query: 1204 L 1204
            L
Sbjct: 1088 L 1088



 Score = 50.1 bits (118), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHH 46
           C TCG+    C GHFG+IDL +PV++   F  + T+L+ IC  C H
Sbjct: 69  CATCGKGLTECVGHFGYIDLELPVFHVGYFKAVITILQTICKSCSH 114


>gi|449462093|ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
            sativus]
          Length = 1400

 Score =  388 bits (997), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 321/1045 (30%), Positives = 483/1045 (46%), Gaps = 191/1045 (18%)

Query: 218  RRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKA 277
            R   K +G V    +   ++ +  L P  V  + +++ + + EL  F+S+  ++      
Sbjct: 193  RARSKDAGVVSEDLRAPYNVSNDILNPFRVLCLFQRMSDEDCELL-FLSNRPEK------ 245

Query: 278  GHSIFFLGVVLVPPIKFRLPS--KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAK 335
                  +  VLVPPI  R PS    G    E+  T  L +++Q N  ++         AK
Sbjct: 246  ----LIITNVLVPPIAIR-PSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQAK 300

Query: 336  VIVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYA 390
             + + W  LQ  V  L +         M      +G  Q L+ K+G FR  L GKRV + 
Sbjct: 301  CLES-WDMLQSEVAQLINSDVRGIPFSMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFT 359

Query: 391  CRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDK 450
             R+VISPDP L + E+ +P + A  LTYPERVT  N+ KLR  + NG + +PGA      
Sbjct: 360  GRTVISPDPNLKITEVAVPIHMARILTYPERVTRHNIEKLRQCVSNGPDKYPGARML--- 416

Query: 451  LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKD--SDNEFEGKMVYRHLQDGDVVLVNRQ 508
                             R LD S  +++  G+   +D    G++V RHL+DGDVVL NRQ
Sbjct: 417  -----------------RHLDGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQ 459

Query: 509  PTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVN 568
            P+LH+ SIM H VRV+   +TLR + + C+ YNADFDGDEMN+H PQ E +R EA  ++ 
Sbjct: 460  PSLHRMSIMCHRVRVMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMG 518

Query: 569  ANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGK 628
              N    P NG+ L +  QD + S+ L+T+KDTF +R  F           S + S+ G 
Sbjct: 519  VQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF-----------SLMCSYMGD 567

Query: 629  PGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDF 688
                V         LP  PA+ KP  LWTGKQ+ + ++                  P   
Sbjct: 568  GMDLV--------DLPT-PALVKPIELWTGKQLFSVLVR-----------------PHAS 601

Query: 689  FKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELS 748
             K   N                      K+KS  K +      G EKE      +E    
Sbjct: 602  MKVYLNLTV-------------------KEKSYSKVK------GNEKE------RETMCP 630

Query: 749  EEKLLIYKN-DLVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
             +  + ++N +L+ G + KA   +    GL   +   Y ++ A   ++ L++L   ++  
Sbjct: 631  NDGFVYFRNSELISGQVGKATLGNGNKDGLYSVLLRDYKAHAAAVCMNRLAKLSARWIGN 690

Query: 805  HGFTCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEI 860
            HGF+ G+DD+     ++K K+      L G  +  K+++L      +   + P       
Sbjct: 691  HGFSIGIDDVQPGDQLVKKKQ---TTILEGYRDCDKQINLF-----NTGNLPP------- 735

Query: 861  EKAMRGGGDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAK 918
                  G DAA +  + K+T  LN  +  +++V  + L         +N   +M+  G+K
Sbjct: 736  ----EAGCDAAQS-LESKITQILNGIREATANVCMQNLH-------WRNSPLIMSQCGSK 783

Query: 919  GSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQE 978
            GS +N  Q+ + +GQQ + G+R P     ++LP F      P A GF+ + F +GL   E
Sbjct: 784  GSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAAKGFVANSFYSGLTATE 843

Query: 979  YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY---- 1034
            ++FH M GREGLVDTAVKT+ +GY+ R LIK LE L I YD SVR+A G IVQFCY    
Sbjct: 844  FFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGCIVQFCYGDDG 903

Query: 1035 -------GEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDK----------------- 1070
                   G+ G  ++      K  A    +  +    ++F +                  
Sbjct: 904  MDPAQMEGKSGAPLNFERLFLKAKATCPSDGNKILSPSEFSETVEDRLSKDDASPECGCS 963

Query: 1071 ----GSHTFVMGRNQEMIYKKCSGQLDASNAYIME---LPDALKDNAEKFADKFLSN--- 1120
                GS    + +  E   KK  G L A N   ++   +  +  DN     +K + N   
Sbjct: 964  PAFVGSLKIFLNKYVEA-QKKSWGTLLADNESAVDKSIISSSDNDNIV-IRNKVVQNIAG 1021

Query: 1121 --EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTL 1178
                  Q FL     ++     + G  +G + +QS+GEP TQMTL TFH AG   MNVTL
Sbjct: 1022 VTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTL 1081

Query: 1179 GIPRLQEILTIASKDIKTPVITCPL 1203
            G+PR++EI+   +K I TP++T  L
Sbjct: 1082 GVPRIKEIIN-GAKRISTPIVTAAL 1105



 Score = 47.0 bits (110), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVR- 59
           C TC      CPGH+G+++L +PV+N   F  +  +LK IC  C       +  +  +R 
Sbjct: 77  CATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEKLFKDFLRK 136

Query: 60  ----KLELIIKGDII 70
               KLE + K D++
Sbjct: 137 MRNPKLEALRKVDLV 151


>gi|452844664|gb|EME46598.1| hypothetical protein DOTSEDRAFT_70566 [Dothistroma septosporum NZE10]
          Length = 1491

 Score =  388 bits (996), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 309/1023 (30%), Positives = 464/1023 (45%), Gaps = 178/1023 (17%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            L P  V +I++K+   + EL      M  Q  G+           +  PP+  R      
Sbjct: 235  LTPLRVLNILKKVPNVDVELLG----MDPQSGGRP---EYMIWTHIPAPPVAIRPSVAQE 287

Query: 302  DSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQR 361
             +  E   T  L  ++Q N  +  A        KV+   W  +Q  + +  DG      R
Sbjct: 288  AASTEDDITNKLGDIIQINQLMLAALSAGQALGKVM-ELWEFMQVQIAMYIDGNLPGLGR 346

Query: 362  DMA-----SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRL 416
            D A      G CQ L+ K+G FR  L GKRV+++ R+VISPDP LA++E+ +P   A+ +
Sbjct: 347  DSAYGKAMRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLAIDEVAVPQRVAVNM 406

Query: 417  TYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGA 476
            TYPERVT  N  KL+  I  G ++HPGA + +      R+     +R+ +G K D  + A
Sbjct: 407  TYPERVTKHNFEKLKACIRRGDKVHPGANYIVKGRDKRRIV----LRM-VGLKGDLHKVA 461

Query: 477  IVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYAN 536
                    D    G  V RHL+DGD+VL NRQP+LHK SI++H  ++ +  +T R++   
Sbjct: 462  --------DQLEIGDTVERHLEDGDIVLFNRQPSLHKLSILSHRAKI-RPWRTFRLNECV 512

Query: 537  CSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALL 596
            C+ YNADFDGDEMN+H PQ E +R EA  ++   +    P NG P+ + IQD I  A L+
Sbjct: 513  CNPYNADFDGDEMNLHVPQTEEARTEATELMGVKHNLATPKNGTPIIAAIQDFITGAYLI 572

Query: 597  TKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLW 656
            ++KD F +R +F  ++     +      +TGK        +   E+ P  PAIWKP+ LW
Sbjct: 573  SQKDLFFSRRQFTHVVSFMYNALEVTDPYTGK--------KYPIEIPP--PAIWKPQTLW 622

Query: 657  TGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMH 716
            TGKQ+   ++                  P   +    N +           KL       
Sbjct: 623  TGKQIWNLLMK-----------------PHRDYPVNVNLE----------AKL------- 648

Query: 717  KDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YG 773
                  K+     +PG+  +   + S         L+I  ++ + G  DKA   D     
Sbjct: 649  ------KQFAPPSRPGDADDMVDSDS--------YLVIRNSETMCGAFDKATIGDGKKTS 694

Query: 774  LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHL----- 828
            + + +   +G + A   ++ L++L   +L   GF+ G+ D+    DK   RK  L     
Sbjct: 695  VFYVIMRDFGPDYAAAAMTRLAKLSARWLGERGFSIGISDVY-PSDKLNARKQELIDTAY 753

Query: 829  HGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTS 888
               +E+  +     LE   G + +       +E  + G            + S++    +
Sbjct: 754  KACDEVIDKFKKGKLERSPGCDEE-----QTMEITLSG------------ILSKVRAQCA 796

Query: 889  SSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGK 948
             +   EL        +  N    M   G+KGS +N  Q+ + +GQQ + G+RV      +
Sbjct: 797  DACFAEL--------SKFNAPMTMAKCGSKGSNINVSQMVASVGQQIIGGQRVLEGFQDR 848

Query: 949  TLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1008
            TLP F      P A GF+ D F +GL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+
Sbjct: 849  TLPHFPKASRDPLAKGFVADSFFSGLTPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLM 908

Query: 1009 KNLECLKISYDYSVRDADGSIVQFCYGEDG---VDVHQTSFISKFDALAARERGRGRGRN 1065
            K+LE L   YD +VR++   +VQ  +G+DG   VD+  ++    F      ER       
Sbjct: 909  KSLEDLSAQYDLTVRNSSSGVVQMKFGDDGLDPVDMEGSAKPVNF------ERTWMHAIT 962

Query: 1066 KFCDKGSHTFVMGRNQEMIYKKCSGQLDASNA---------------YIMELPDALK--- 1107
               +    T  M    E++    +  LDA                  Y  E+   LK   
Sbjct: 963  STWNNSERTLTMAEILELV----NTTLDAERVKLIRVSEDGKRLEYTYDWEVEKNLKLVD 1018

Query: 1108 ---------DNAEKF----ADKFLSNEM---AKQD-----------FLKLVKHKFVLSLA 1140
                     D+   F    ADK + N+      QD           FL+L   K+  S  
Sbjct: 1019 QSEYSRTFLDDIAGFIVGKADKMVKNQAKLEGSQDIFKITRSALDRFLQLCLRKYEKSKT 1078

Query: 1141 QPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
            + G  VG + + S+GEP TQMTL TFH AG   M++T G+PR++EI+  ASK I TPVI 
Sbjct: 1079 EAGHAVGAVGAHSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN-ASKVISTPVIN 1137

Query: 1201 CPL 1203
            C L
Sbjct: 1138 CAL 1140


>gi|255938285|ref|XP_002559913.1| Pc13g15170 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211584533|emb|CAP92586.1| Pc13g15170 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1448

 Score =  387 bits (995), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 319/1058 (30%), Positives = 496/1058 (46%), Gaps = 197/1058 (18%)

Query: 210  PGTQDTAARRHQKGSGAVPS---GFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFIS 266
            P ++D       +  GA P     FKK +D  +    P  V  + +K+ +++ EL     
Sbjct: 204  PISKDVFDNSFLEARGANPEVEKHFKKAQDDMN----PLRVLKLFKKMSDSDCELIGMNP 259

Query: 267  DMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQANIYLAN 325
                    K+A   +F    +  PP+  R PS G D    E   T  L  ++Q+NI L N
Sbjct: 260  --------KEARPEMFLWQFIPAPPVCIR-PSVGQDGASTEDDLTAKLGDIVQSNINLKN 310

Query: 326  AYVNQPDNAKVIVARW--MNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQK 381
            A +      + I+  W  M LQ +V +  D  G N A       G  Q L+ K+G FR  
Sbjct: 311  ALLKGAP-VQTIMECWDYMQLQIAVYINSDVPGLNKADLGKPIRGFVQRLKGKQGRFRGN 369

Query: 382  LMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIH 441
            L GKRV+++ R+VISPDP L V+E+ +P   A  +TYPE VT +N  KL+  I NG+   
Sbjct: 370  LSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPELVTRYNKEKLQQRICNGSNKW 429

Query: 442  PGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGD 501
            PGA   + K +  R    + ++ S     +T R A        D   EG +V RHL+DGD
Sbjct: 430  PGANLIVKKGTGFR----QMLKYS-----NTQRMA--------DQLQEGDLVERHLEDGD 472

Query: 502  VVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRA 561
            +VL NRQP+LHK SI++H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RA
Sbjct: 473  IVLFNRQPSLHKLSILSHFAKI-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARA 531

Query: 562  EAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL-LYSSGVSSS 620
            EA  ++   N    P NG+P+ S IQD I +A +L+ KD F +R  F Q+ LY  G  + 
Sbjct: 532  EAMELMGVKNNLATPKNGEPIISAIQDFISAAYVLSSKDNFYDRASFTQICLYMLGPET- 590

Query: 621  GLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVER 680
                F   P                 P+I KP+ +WTGKQV   +L    +  P  V   
Sbjct: 591  ---RFDLPP-----------------PSILKPQMMWTGKQVFN-ILMRPNKDDPVMV--- 626

Query: 681  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
                         N D              +  KM KD S K  +  +G           
Sbjct: 627  -------------NLDAA-----------CREFKMPKDGSPKDLDPNDG----------- 651

Query: 741  KSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRL 797
                       L+I  ++++ GV+DK+         + + +   +G   A   ++ LS+L
Sbjct: 652  ----------WLVIRNSEVMCGVMDKSTIGSGKKDNVFYILLRDFGPPAAAEGMNRLSKL 701

Query: 798  FTVFLQMHGFTCGVDDLLILKDKERERKNHLHGS----EEIGKRVHLEALELEDGA-EID 852
               +    GF+ G+ D+   ++  + + + +  +    +E+  +     LE   G  E+ 
Sbjct: 702  SARWFTNIGFSIGIGDVYPSEELVQSKNDLVEAAYSQCDEVIAKYKAGTLEKYPGCDELQ 761

Query: 853  PI--KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS 910
             +  ++   + K  +  GD  +         QL+K+ S  +                   
Sbjct: 762  TMENQISGILSKVRQQAGDECI--------RQLSKYNSPLI------------------- 794

Query: 911  LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRF 970
             M TSG+KGS +N  Q+ + +GQQ + G+RV      +TLP F      P + GF+ + F
Sbjct: 795  -MATSGSKGSGINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSF 853

Query: 971  LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIV 1030
             +GL+P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++  +IV
Sbjct: 854  FSGLQPPEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSMYDDTVRNSSAAIV 913

Query: 1031 QFCYGEDGVD-----------------VHQTS--------------FISKFDALAARERG 1059
            QF YG+D +D                 +H  S               +   + + ++ER 
Sbjct: 914  QFQYGDDKLDPVDMEGKAKPVHFDRTFIHSESTTYNNEERSLLPAEIMDVCEQMLSKERA 973

Query: 1060 RGRGRNKFCDKGSHTFVMGRNQEMI--YKKCSGQLDASNAYIMELPDAL------KDNAE 1111
            +   ++     G+    M R+   I  ++     LD+   Y+    D L       D ++
Sbjct: 974  KLNRKDLL---GNDLAYMDRSDHGIDQFESARDFLDSIQEYVQNRADKLISRGGDIDPSD 1030

Query: 1112 KFADKFLSN-----EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTF 1166
            + + K L +     E   + F+     K+  +  +PG  VG + +QS+GEP TQMTL TF
Sbjct: 1031 QRSRKGLDHTGKLTETTLRAFITACLLKYKRAQVEPGHAVGAVGAQSIGEPGTQMTLKTF 1090

Query: 1167 HLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            H AG   M++T G+PR++EI+  AS++I TPV+ C L+
Sbjct: 1091 HFAGVAGMSITQGVPRIKEIIN-ASREISTPVVACELV 1127



 Score = 47.0 bits (110), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C TCG     C GHFGH+ LV+P ++   F  + ++L+ IC  C +    +A RR   + 
Sbjct: 78  CATCGNNLKDCNGHFGHVRLVLPSFHVGYFKRVISILQEICKECSNILLPEAERRTYLRE 137

Query: 58  VRK 60
           +R+
Sbjct: 138 MRR 140


>gi|357609436|gb|EHJ66444.1| hypothetical protein KGM_02886 [Danaus plexippus]
          Length = 1072

 Score =  387 bits (995), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 294/897 (32%), Positives = 435/897 (48%), Gaps = 164/897 (18%)

Query: 340  RWMNLQQSV-NVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
            +W  L   + N+LF  K          G+ Q L+ K+G FR  L GKRV+++ R+VISPD
Sbjct: 7    KWTALLVFIQNLLFQPKKPG------RGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPD 60

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP 458
            P L + E+G+P + A  LTYPERV P N+  LR  + NG ++HPGA +Y+ +        
Sbjct: 61   PNLQIQEVGVPVHVAKILTYPERVFPANLQWLRQLVRNGPDVHPGA-NYVQQRGV----- 114

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
            + K  +  G     +R  I Q  K  D       V RHL DGDVVL NRQP+LHK SIM 
Sbjct: 115  SHKKYLKYG-----NRDKIAQELKCGDT------VERHLVDGDVVLFNRQPSLHKLSIMC 163

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H  RV + ++T R +   C+ YNADFDGDEMN+H PQ E +RAEA  ++   +  V P N
Sbjct: 164  HRARV-QPQRTFRFNECVCTPYNADFDGDEMNMHLPQTEEARAEALILMGNKSNLVTPRN 222

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            G+ L +  QD I    L+T++D+F    E  QL          +      P   + +   
Sbjct: 223  GELLIAATQDFITGGYLITQRDSFFTLPEARQL----------VACLLAGPDSTMRVDMP 272

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
                    PAI KP  LWTGKQ+ + ++                             +K+
Sbjct: 273  P-------PAILKPRMLWTGKQIFSLIM---------------------------KPNKR 298

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND 758
             + K N + K        K+ +G +   V+                    +  ++I  ++
Sbjct: 299  CEVKANLETK-------GKNYTGNQDMCVQ--------------------DSYVIIRNSE 331

Query: 759  LVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
            L+ G +DK+         + + +   +G   A   +  L+R+ + ++   GF+ G+ D +
Sbjct: 332  LICGSMDKSTLGSGTKNSVFYILLRDWGEEYAVRGMWRLARMASYYMMNRGFSFGIID-V 390

Query: 816  ILKDKERERKNHLHGSEEIGKRVHLEALELEDG-AEIDPIKLKSEIEKAMRGGGDAAVAY 874
               +K  E KN L                LE G ++ D   L+ E        G +    
Sbjct: 391  TPGNKLIEAKNKL----------------LESGYSKCDGYILEMEKGTLQCQPGCSMEET 434

Query: 875  FDMKMTSQLNKHTSSSVINELLSEGL---LKPTGKNWISLMTTSGAKGSKVNFQQISSHL 931
             +  M S+L      S I EL ++     L PT  N   +M  SG+KGS +N  Q+ + +
Sbjct: 435  LEAIMLSEL------SSIRELAAKACFRELHPT--NAPLIMAQSGSKGSNINISQMIACV 486

Query: 932  GQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLV 991
            GQQ L GKRVP     ++LP F      P A GF+ + F +GL P E++FH M GREGLV
Sbjct: 487  GQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYSGLTPTEFFFHTMGGREGLV 546

Query: 992  DTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFD 1051
            DTAVKT+ +GYLQR L+K+LE L + YD +VR+A   +VQF YG DG+D    S++   D
Sbjct: 547  DTAVKTAETGYLQRRLVKSLEDLVLHYDMTVRNATSEVVQFRYGSDGLD---PSYMEGRD 603

Query: 1052 ------ALAARERGRGRGRNKFCDKGSHTFVMGRNQEMI--YKKCSGQLDASNAYIMELP 1103
                   +    R   R +++    G    V       +  +K C  +  A      EL 
Sbjct: 604  RPVDLTRVLRHVRASCRTQDEEPLDGEGIVVAAEETLALDDFKTCPPEFKA------ELL 657

Query: 1104 DALKDNA-------EKFA---------DKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVG 1147
            + LK  A       E++A         ++    ++ +  F+++   K+  S+ +PG  VG
Sbjct: 658  EFLKGTAAKVRSLRERYASAGPVALQLERLTLTQLVR--FIRVCHEKYQRSIIEPGTAVG 715

Query: 1148 LLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
             LA+QS+GEP TQMTL TFH AG   MN+T G+PR++EI+  ASK+I TP+IT  L+
Sbjct: 716  ALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIIN-ASKNISTPIITAELM 771


>gi|380492531|emb|CCF34539.1| RNA polymerase Rpb1 [Colletotrichum higginsianum]
          Length = 1709

 Score =  387 bits (995), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 267/734 (36%), Positives = 377/734 (51%), Gaps = 97/734 (13%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC   Q  CPGH GHI+L VPVY+P+  + +  LL+  C +C  F+   RE+ +   K
Sbjct: 62  CATCNLNQSSCPGHAGHIELPVPVYHPVFLDQVLRLLRSQCVYCKGFRMRHREINRYSCK 121

Query: 61  LELIIKG--------DIIAAKSLDLDLPSESSNPEDSDVSNKSSC--SMVTPRGNY---- 106
           L L+  G        D I  +   L LP   ++ E       SS   +++  R  Y    
Sbjct: 122 LRLLQHGLLHEAHLVDAIGEELKGLALPGVPTDYESEAEEEGSSSVDNIIGAREAYVRQA 181

Query: 107 --------DNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWI 158
                     VR  K +    ++    K  L Q  K    +C NC   +P   K  F  I
Sbjct: 182 LKSHKLSLGEVRKGKHEGAIEMRRELIKDFLTQITK--PRRCDNCGGISPAYRKDRFVKI 239

Query: 159 HMNGMPHADIRANLIRGCNLGETFSG-----------GEEEKDLGASSDVDAP------- 200
               +   D+     R  ++ ++ +            G  + D G + DVD         
Sbjct: 240 FEKALSERDLAQMAQRNLHIKDSMATAARARKSKAKRGAADADEGIA-DVDMTSAEENDI 298

Query: 201 ETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFE 260
           E H  +G     QD A +  +  + AV     +Q+ + +      +V+  + +L+E E +
Sbjct: 299 EMHDASGD---EQDLADKEEELRADAVAVAPGQQRYISA-----MEVRARLRELFEKEQD 350

Query: 261 LCSFISDMQQQGFGKKAGH---SIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVL 317
           + S +     +   KKA      +FF+  +LVPP KFR  ++ GDS +   Q   L K++
Sbjct: 351 IMSLV--YSSKPTTKKAAQVSADMFFIRTILVPPNKFRPEARTGDSQISEAQQNSLYKMI 408

Query: 318 QANI---------YLANAYVNQPDNAKVIVARWMNLQQSVNVLFD-GKN----AAGQRDM 363
             N            A     +P +   +   W  LQ+SVN L D  KN    AA +R+ 
Sbjct: 409 MRNCGNIARMHQSVGATDQYGRPRDITDLHQVWTELQESVNSLIDKSKNPVQGAAAKRN- 467

Query: 364 ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVT 423
             GI Q LEKKEGLFR+ +MGKRVN+A RSVISPDP +  NEIG+PP FA +LTYPE VT
Sbjct: 468 EDGIKQKLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFARKLTYPEPVT 527

Query: 424 PWNVVKLRDSIINGAEIHPGAT--HYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPG 481
             N   ++ ++ING +  PGA    Y +         +   R+S+  +L       + P 
Sbjct: 528 SHNFRDMQQAVINGVDKWPGAAAIEYENGQIVNLRSKSVDDRMSLANQL-------LAPT 580

Query: 482 KDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYN 541
            +  +  + K VYRHL +GDVVL+NRQPTLHKPSIM H VRVL GEKT+RMHYANC+TYN
Sbjct: 581 NNHMSGMKSKKVYRHLTNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYN 640

Query: 542 ADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDT 601
           ADFDGDEMN+HFPQ+EV+RAEA  I + ++QY+  + G PLR LIQDH+  +  L  KDT
Sbjct: 641 ADFDGDEMNMHFPQNEVARAEALQIADTDHQYLSGTAGKPLRGLIQDHLSVSVALCNKDT 700

Query: 602 FLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQV 661
           F +RD + QL+Y++    SG        G+R+       E++P  PA+ KP P WTGKQV
Sbjct: 701 FFDRDSYQQLIYAALRPESG-----HILGERI-------ELIP--PAVIKPRPRWTGKQV 746

Query: 662 ITAVLNHITRGRPP 675
           I+ +L +I   +PP
Sbjct: 747 ISTILKNI---KPP 757



 Score =  362 bits (928), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 216/491 (43%), Positives = 293/491 (59%), Gaps = 38/491 (7%)

Query: 747  LSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
            L E  +L      + G++DKA    +  GL+H++ E+YG   AG LLS + RL T +L M
Sbjct: 780  LEEGSVLFQDGQFLTGILDKAHLGPSSGGLIHSIHEIYGPAVAGKLLSGMGRLLTRYLNM 839

Query: 805  HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGA--EIDPIKLKSEIEK 862
              FTCG+DDL +  + E  R+  L  ++ IG  V  + + L+D A    DP +L   +E+
Sbjct: 840  RAFTCGMDDLRLTSEGEVARREALKAAKNIGLEVAAKYVSLDDKAPNSTDP-ELLVRLEE 898

Query: 863  AMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV 922
             +R   D      DM M +Q ++  SS+V    L  GL+K   KN +  MTTSGAKGS+V
Sbjct: 899  VLRD--DTKQEGLDMLM-NQSSQIVSSAVTTACLPIGLVKQFPKNQMQAMTTSGAKGSQV 955

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N   IS +LGQQ LEG+RVP MVSGK+LP F P++   RAGG+I+ RFLTG+RPQEYYFH
Sbjct: 956  NANLISCNLGQQVLEGRRVPVMVSGKSLPCFKPFETDVRAGGYIVQRFLTGIRPQEYYFH 1015

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVH 1042
             MAGREGL+DTAVKTSRSGYLQRC+IK +E L ++YD +VRDADG++VQF YGEDG+D  
Sbjct: 1016 HMAGREGLIDTAVKTSRSGYLQRCIIKGMEGLTVTYDSTVRDADGTLVQFLYGEDGLDPT 1075

Query: 1043 QTSFISKFDAL---AARERGRGRGRNKFCDK--GSHTFVMGRNQEMI-YKKCSGQL---- 1092
            +  +++ F  +    A E  +    N F DK  GS   ++   +  I + K +  +    
Sbjct: 1076 KQKYLTDFSFVLRNVASESAQLNFGNGFKDKLAGSKDEILKHMKSAIKHAKLNSTVAKDP 1135

Query: 1093 ------------DASNAYIMELPDALKDNAEKF------ADKFLSN--EMAKQDFLKLVK 1132
                          S  +  ++   +KDN +        A   L N   ++K+    +  
Sbjct: 1136 IISMVNPARVAFATSEKFYAKMTKYIKDNKDGLIRDKSSAPSGLINAPAVSKKSAELVFA 1195

Query: 1133 HKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASK 1192
             K++ SL + GE VG++A QSVGEPSTQMTLNTFHLAG    NVTLGIPRL+EIL  AS+
Sbjct: 1196 AKYMRSLVEAGEGVGIVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASR 1255

Query: 1193 DIKTPVITCPL 1203
             I TP +T  L
Sbjct: 1256 SISTPAMTLLL 1266


>gi|389640261|ref|XP_003717763.1| DNA-directed RNA polymerase I subunit RPA1 [Magnaporthe oryzae
           70-15]
 gi|351640316|gb|EHA48179.1| DNA-directed RNA polymerase I subunit RPA1 [Magnaporthe oryzae
           70-15]
 gi|440471843|gb|ELQ40777.1| DNA-directed RNA polymerase I subunit RPA1 [Magnaporthe oryzae Y34]
 gi|440483991|gb|ELQ64198.1| DNA-directed RNA polymerase I subunit RPA1 [Magnaporthe oryzae
           P131]
          Length = 1719

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 264/724 (36%), Positives = 364/724 (50%), Gaps = 85/724 (11%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC      CPGH GHI+L VPVY+P+  + +  LL+  C +CH F+  RR++ + +  
Sbjct: 62  CATCNLGPSACPGHPGHIELPVPVYHPVFMDQVLRLLRSQCAYCHRFRMRRRDINRYICL 121

Query: 61  LELIIKGDIIAAKSLDL-----DLPSESSNP-----EDSDVSNKSSCSMVTPRGNYDNVR 110
             L+  G +  AK LDL     D  SE   P     E  D     +   V  R     VR
Sbjct: 122 FRLLQYGLLAEAKRLDLIGDSLDGVSEGDTPKGGESETEDAQGGKTTEDVVIRKRNAYVR 181

Query: 111 NLKPQEWTSLQ---------FAEAKLALL-QFLKIETTK--CGNCKAKNPRISKPTFGWI 158
            +  Q   SL           +E +  L+ QFL+  T    C +C   +P   K  F  I
Sbjct: 182 QVLQQHQISLGEIRKGKHEGASEMRRDLVKQFLQDMTKSRICASCDGVSPTYRKDRFVKI 241

Query: 159 HMNGMPHADI------RANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGT 212
               +   D       R  L     + +     E  +   A SD D P   S        
Sbjct: 242 FEKPLSSKDQGKMAQGRFKLRDAMAIRQKPKTDEGYQSDEAVSDADLPSEESSGEESVDG 301

Query: 213 QD--------TAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCS- 263
            D           +   K SGA PS    Q+ L +      +V + ++ L+E E E+ S 
Sbjct: 302 DDLDEQGNVVKLPKSKPKKSGAAPS----QRYLSA-----REVLERLDLLFEKEQEVLSL 352

Query: 264 FISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDS-VMEHPQTVLLSKVLQANIY 322
           F +        K     +FF+  +LVPP +FR  ++ GDS + E  Q  L   +L+A+  
Sbjct: 353 FYNSKPSHKSTKHINAGLFFVQTLLVPPNRFRPEARTGDSQINEAQQNSLYKAILKASTK 412

Query: 323 LANAYVNQPDNAKVIVAR-----------WMNLQQSVNVLFDGKNA----AGQRDMASGI 367
           L   + +  +   ++  R           W  LQ  VN L D   +    A  + +  GI
Sbjct: 413 LTQIFRDLQNPTSLLSQRHGKDTTILHEAWTELQDCVNTLIDNTKSPTQGAAAKALEEGI 472

Query: 368 CQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNV 427
            Q LEKKEGLFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA +LTYPE VT  N 
Sbjct: 473 KQKLEKKEGLFRKNMMGKRVNYAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNF 532

Query: 428 VKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM--RISIGRKLDTSRGAIVQPGKDSD 485
             ++ ++ING +  PGA    ++   +    NK    R S+  +L       + P  ++ 
Sbjct: 533 RDMQQAVINGPDKWPGAAAIENENGQIVNLRNKSQEERSSLANQL-------LAPTSNNS 585

Query: 486 NEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
                K V+RH+ +GDVVL+NRQPTLHKPSIM H VRVL GEKT+RMHYANC+TYNADFD
Sbjct: 586 GNMRNKKVHRHISNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNADFD 645

Query: 546 GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
           GDEMN+HFPQ+EV+R EA  + + ++QY+  + G PLR LIQDH+  +  L  KDT+L+R
Sbjct: 646 GDEMNMHFPQNEVARTEALQLADTDHQYISGTQGKPLRGLIQDHLSVSVALCNKDTYLDR 705

Query: 606 DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
             + +L+Y++    SG             I R   E++P  PAI KP+  WTGKQVIT V
Sbjct: 706 SAYHELVYNALRPESG------------HILRERIELVP--PAIIKPKARWTGKQVITTV 751

Query: 666 LNHI 669
           L +I
Sbjct: 752 LRNI 755



 Score =  366 bits (940), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 223/501 (44%), Positives = 294/501 (58%), Gaps = 53/501 (10%)

Query: 748  SEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
            SEE  +++++ + + G++DKAQ   +  GLVH V E+YG   AG LLSA+ RL T +L M
Sbjct: 780  SEEGQVLFRDGEFISGILDKAQLGPSSGGLVHAVHEVYGPAIAGKLLSAMGRLLTRYLNM 839

Query: 805  HGFTCGVDDLLILKDKERERKN------HLHGSEEIGKRVHLEALELEDGAEIDPIKLKS 858
              FTCG+DDL +  + E +R+N      HL G +   K V   +L+    A  DP +L  
Sbjct: 840  RAFTCGMDDLKLTPEGEADRRNIIDSRAHLVGLQVAAKYV---SLDQHQPANDDP-ELLR 895

Query: 859  EIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAK 918
             +E+ MR   D      D  M S  +KH S  +    L +GL K   KN +  MT SGAK
Sbjct: 896  RLEEVMRD--DTKQEGLDGVMNSG-SKHLSQDITTACLPKGLEKQFPKNQMQAMTISGAK 952

Query: 919  GSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQE 978
            G +VN   IS +LGQQ LEG+RVP MVSGK+LP F P++   RAGG+I++RFLTG+RPQE
Sbjct: 953  GGQVNANLISCNLGQQVLEGRRVPLMVSGKSLPCFKPFETDIRAGGYIVNRFLTGIRPQE 1012

Query: 979  YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDG 1038
            YYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E L+I YD SVRDADGS+VQF YGEDG
Sbjct: 1013 YYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLEIGYDNSVRDADGSLVQFLYGEDG 1072

Query: 1039 VDVHQTSFISKF----------------------------DALAARERG---RGRGRNKF 1067
            +DV +  ++  F                            D +  + +    + +   +F
Sbjct: 1073 LDVTKQKYLKDFTFILHNIKSELAQLNISDPRTLPLFELRDEILKQNKSNLKKAKANPRF 1132

Query: 1068 CDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDAL---KDNAEKFADKFLSN--EM 1122
               G     M       Y       DA ++Y+ E PDAL   KD+  + +    S+   +
Sbjct: 1133 F-TGEPVSSMLNPTRYAYATSEKFFDAMSSYVKENPDALIKEKDDKLRNSGPQSSSIVRL 1191

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
             ++   K++  K++ SL  PGE VG++A QSVGEPSTQMTLNTFHLAG    NVTLGIPR
Sbjct: 1192 NRKAAEKVLSAKYMRSLVHPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPR 1251

Query: 1183 LQEILTIASKDIKTPVITCPL 1203
            L+E+L  AS  I TP +T  L
Sbjct: 1252 LRELLMTASSKISTPSMTLIL 1272


>gi|167044066|gb|ABZ08751.1| putative RNA polymerase Rpb1, domain 2, partial [uncultured marine
            crenarchaeote HF4000_APKG4H17]
          Length = 993

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 291/839 (34%), Positives = 406/839 (48%), Gaps = 156/839 (18%)

Query: 367  ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
            + Q L+ KEG FR  L GKRV+++ R+VISPDP L + E+G+P   A +LT PE VT WN
Sbjct: 30   LTQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLDLGEVGVPVQVATKLTIPEIVTEWN 89

Query: 427  VVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN 486
            + KL+  +ING +  PG  + +        P   K+R+         R  I      +D+
Sbjct: 90   IEKLKKLVINGPDTFPGVNYIVR-------PDGVKIRLDFVE----DRSII------ADS 132

Query: 487  EFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDG 546
               G +V RHL DGDVVL NRQP+LH+ SIMAH VRVL G KT R+H + C  YNADFDG
Sbjct: 133  LEIGYLVERHLSDGDVVLFNRQPSLHQMSIMAHHVRVLPG-KTFRLHPSVCPPYNADFDG 191

Query: 547  DEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRD 606
            DEMN+H PQ E +RAEA  ++    Q + P  G P+   ++D I  A LLTK DT L + 
Sbjct: 192  DEMNLHVPQSEEARAEAIMLMRVQEQLISPRFGGPIIGGLRDFITGAYLLTKDDTTLTKQ 251

Query: 607  EFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL 666
            EF           + LG + G+              LP      K  PL+TGKQ+ +   
Sbjct: 252  EFSNF--------AMLGGYDGE--------------LPEPKIKNKNGPLYTGKQLFSLF- 288

Query: 667  NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEV 726
                             LP DF                    L  T+K  K  +GK K++
Sbjct: 289  -----------------LPSDF-------------------NLILTSKWSKGTNGKLKDI 312

Query: 727  VEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYG 783
            V                          I   +LV GVIDK+         ++H + + YG
Sbjct: 313  V--------------------------IKNGELVSGVIDKSSIGAEEPESVLHRIAKDYG 346

Query: 784  SNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL 843
            +  A T L+++  +   F+  +GF+ G  DL +    +++R   L   +E   +V     
Sbjct: 347  NEKAKTFLNSILIIIKQFITNYGFSYGYSDLEL---SDKDRGAILTDLQETYDKV----- 398

Query: 844  ELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVI--NELLSEGLL 901
                 A+I   K K  + K +RG   A  A  +  +T +L +    + I  N  L++   
Sbjct: 399  -----ADIISQKNKGTL-KGLRGLTVAETA--EALITYELARARDRAGITANSNLAD--- 447

Query: 902  KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 961
                 N   +M T+GA+GS +N  Q++  LGQQ   GKR+      +TLP F   D  P 
Sbjct: 448  ----DNAGKIMATTGARGSALNVGQMAGALGQQSRRGKRLHTGYGNRTLPHFKEHDDNPD 503

Query: 962  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1021
            + GF+   F  GL   E++FH M GREGLVDTAV+T +SGY+QR LI  LE +++ YD +
Sbjct: 504  SHGFVKSNFRDGLSVLEFFFHAMGGREGLVDTAVRTQQSGYMQRRLINALEHIRLEYDNT 563

Query: 1022 VRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ 1081
            VRD  G I+QF YGEDG+DV ++     F+        R        D GS         
Sbjct: 564  VRDPHGHIIQFLYGEDGIDVAKSDHGEAFNI------NRLIESKSIIDTGSK----ATKD 613

Query: 1082 EM--IYKKCSGQLDASNAYIMELPDAL-KDNAEKFADKFLSNEMAKQDFLKLVKHKFVLS 1138
            E+  I KK +   +     ++   DAL K N  K            +D  K     +  S
Sbjct: 614  EITNISKKYTKTFNPRLTSMVN--DALHKSNLSK---------AGLEDVCKKGLELYDKS 662

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTP 1197
              +PG+ VG++ +QS+GEP TQMTL TFH AG  E NVTLG+PR+ E++  A K   TP
Sbjct: 663  QVEPGQAVGIVTAQSIGEPGTQMTLRTFHTAGIAEKNVTLGLPRIIELVD-ARKKPSTP 720


>gi|167042230|gb|ABZ06962.1| putative RNA polymerase Rpb1, domain 2 [uncultured marine
            crenarchaeote HF4000_ANIW93I24]
          Length = 1264

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 313/988 (31%), Positives = 463/988 (46%), Gaps = 178/988 (18%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P+ F ++ +L    LLP  +++   ++ +++ EL ++ +   +  +        F L  +
Sbjct: 164  PTIFIEKTELGENRLLPITIRERFLQITDDDLELVNYNTATARPEW--------FILQAL 215

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNL- 344
             VPP+  R PS   +S +  E   T  +  +++ N  L  +   +     +IV   ++L 
Sbjct: 216  PVPPVTVR-PSIILESGIRSEDDLTHKMVDIIRVNQRLKES--KEAGTPPLIVQDLVDLL 272

Query: 345  QQSVNVLFDGK-NAAGQRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
            Q      FD + +   Q    SG     + Q L+ KEG FR  L GKRV+++ R+VISPD
Sbjct: 273  QYHCTTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPD 332

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP 458
            P L + E+G+P   A +LT PE VT WN+ KL+  +ING    PG  + +        P 
Sbjct: 333  PNLDLGEVGVPTSIASKLTIPEIVTEWNIEKLKKLVINGPNTFPGVNYIVR-------PD 385

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIM 517
              K+R+             V+      N+ E G +V RHL DGDVVL NRQP+LH+ SIM
Sbjct: 386  GVKIRLDF-----------VEDTLQVANQLEIGYLVERHLSDGDVVLFNRQPSLHQMSIM 434

Query: 518  AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
            AH VRVL G KT R+H + C  YNADFDGDEMN+H PQ E +RAEA  ++    Q + P 
Sbjct: 435  AHHVRVLPG-KTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAMLLMRVQEQLISPR 493

Query: 578  NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISR 637
             G P+   ++D I  A LLTK DT L + EF           + LG +            
Sbjct: 494  FGGPIIGALRDFITGAYLLTKDDTTLTKQEFSNY--------AMLGGY------------ 533

Query: 638  SEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADK 697
               E LP      K   L+TGKQ+ +                    LP DF         
Sbjct: 534  --DEKLPEPKIKNKNGSLYTGKQLFSLF------------------LPSDF--------- 564

Query: 698  QSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN 757
                          T+K  +  +GK+K+VV                          I   
Sbjct: 565  ----------NFVMTSKWSRGTNGKQKDVV--------------------------IKNG 588

Query: 758  DLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
            +LV GVIDK          ++H + + YG+  A   L+++  +   F+  +GF+ G  DL
Sbjct: 589  ELVSGVIDKTGIGAEEPESILHRIAKDYGNEKANKFLNSVLIIIKQFITDYGFSYGYSDL 648

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
             +    E++R+  L   +E   +V          A+I   K K  + K +RG   A  A 
Sbjct: 649  EL---SEKDRQAILTDLKETYDKV----------ADIIVQKNKGTL-KGLRGMTIAETA- 693

Query: 875  FDMKMTSQLNKHTSSSVI--NELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
             + K+T +L +    + I  N  L++        N   +M T+GA+GS +N  Q++  LG
Sbjct: 694  -EAKITYELARARDRAGITANSNLAD-------DNAGKIMATTGARGSALNVGQMAGALG 745

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ   GKR+    S +TL  F   D  P + GF+   F  GL   E++FH M GREGLVD
Sbjct: 746  QQSRRGKRLHTGYSNRTLSHFKEHDDNPDSHGFVKSNFRDGLSVLEFFFHAMGGREGLVD 805

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDA 1052
            TAV+T +SGY+QR LI   E +++ YD +VRD  G I+QF YGEDG+DV ++     F+ 
Sbjct: 806  TAVRTQQSGYMQRRLINAFEHIRLEYDGTVRDPHGHIIQFLYGEDGIDVAKSDHGEAFNI 865

Query: 1053 LAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEK 1112
                   R        D GS        ++ I           N  +  + +        
Sbjct: 866  ------NRLIESESIIDSGSKA-----TKDEITSISKKYTKVFNPKLTSMVN-------- 906

Query: 1113 FADKFLSNEMAKQDFLKLVKHKFVL---SLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
              D   +++++K+    + K    L   S  +PG+ VG++ +QS+GEP TQMTL TFH A
Sbjct: 907  --DGLHNSKLSKEGLENVCKKGLELYDKSKVEPGQAVGIVTAQSIGEPGTQMTLRTFHTA 964

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTP 1197
            G  E NVTLG+PR+ E++  A K   TP
Sbjct: 965  GIAEKNVTLGLPRIIELVD-ARKKPSTP 991



 Score = 49.3 bits (116), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKA 49
           C TCG     CPGHFGH++L  PV +    + ++ LL+  C  C   K 
Sbjct: 61  CLTCGNTSARCPGHFGHVELSEPVLHIAFIDNIHKLLQATCRSCSRLKV 109


>gi|255582063|ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
            communis]
 gi|223528524|gb|EEF30548.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
            communis]
          Length = 1383

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 311/989 (31%), Positives = 464/989 (46%), Gaps = 203/989 (20%)

Query: 287  VLVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYL----------ANAYVNQPDNA 334
            + VPPI  R PS   D +   E+  T  L +++QAN  L           N Y++  D  
Sbjct: 228  IAVPPISIR-PSVFTDGLQSNENDITERLKQIIQANASLRMELLEGRMSVNKYLDSWDGL 286

Query: 335  KVIVARWMNLQQSV-NVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRS 393
            +  VA +MN    V N +  GK         SG  Q L+ K+G FR  L GKRV +  R+
Sbjct: 287  QAAVALYMNSDVRVPNNVEVGKPL-------SGFVQRLKGKQGRFRGNLSGKRVEFTGRT 339

Query: 394  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLST 453
            VISPDP L + E+ IP + A  L+YPERV+  N+ KLR  + NG + +PGA       ST
Sbjct: 340  VISPDPNLKITEVAIPIHMARILSYPERVSHHNIEKLRQLVSNGPQKYPGA-------ST 392

Query: 454  MRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHK 513
            +R P     R+     + + R  I +     +  F G +V RHL+DGDVVL NRQP+LH+
Sbjct: 393  VRYPDGSSKRL-----IGSYRKTIAE-----ELTF-GCIVDRHLEDGDVVLFNRQPSLHR 441

Query: 514  PSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVN-ANNQ 572
             SIM H  R++   +TLR + + C+ YNADFDGDEMN+H PQ E +R EA  ++  + N 
Sbjct: 442  MSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVSQNN 500

Query: 573  YVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQR 632
               P NG+ L +  QD + S+ L+T++DTF +R  F  +       + G+          
Sbjct: 501  LCTPKNGEILVASTQDFLTSSFLITRRDTFYDRAAFSLM---CSYMNDGMD--------- 548

Query: 633  VLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 692
             LI       LP  PAI KP  LWTGKQ+ + +L                  P    +  
Sbjct: 549  -LID------LP-TPAILKPIELWTGKQLFSVLLR-----------------PNANVRVY 583

Query: 693  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL 752
             N              + +     K K G K+E                 KE     +  
Sbjct: 584  VNL-------------IVREKIYSKPKKGDKRE-----------------KETMCPNDGF 613

Query: 753  LIYKN-DLVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTV--FLQMHG 806
            +  +N +L+ G + KA   +    GL   +   Y  + A T ++ L++L  V  ++  HG
Sbjct: 614  VYIRNSELISGQLGKATLGNGNKDGLYSILLRDYNPHAAATCMNRLAKLRQVARWIGNHG 673

Query: 807  FTCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEK 862
            F+ G+DD+     ++  K +   N     +++ ++ +   L L+ G +            
Sbjct: 674  FSIGIDDVQPGKKLIDGKGKTISNGYQQCDKLIEQYNEGKLLLKPGCD------------ 721

Query: 863  AMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTG-KNWISLMTTSGAKGSK 921
                    A    + ++T +LNK      + E   +  +K    +N   +M+  G+KGS 
Sbjct: 722  --------ATQTLESEITEKLNK------LREEAGDVCMKELHWRNSPLIMSQCGSKGSV 767

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            +N  Q+ + +GQQ + G+R P     ++LP F      P A GF+ + F +GL   E++F
Sbjct: 768  INISQMVACVGQQSVGGRRAPDGFIDRSLPHFPRKSKTPAAKGFVANSFYSGLMATEFFF 827

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD- 1040
            H MAGREGLVDTAVKT+ +GY+ R LIK LE L I YD +VR+A G IVQF YG+DG+D 
Sbjct: 828  HTMAGREGLVDTAVKTADTGYMSRRLIKGLEDLSIQYDNTVRNASGCIVQFLYGDDGLDP 887

Query: 1041 -------------------------VHQTSFISKFDALAARERGRGRGRNKFCDKGSHTF 1075
                                     V +  ++S  D     E       N       H  
Sbjct: 888  ASMEGKGGVPLNLDRLFSKVKATCPVREEDYLSPLDISDVVE-------NLLL---KHDM 937

Query: 1076 VMGRNQEMIYKKCSGQLDASNA----YIMELPDALKDNA----------------EKFAD 1115
             +G      +KK       S+A     +M+L D ++D                  E+ A 
Sbjct: 938  ALGGICSEAFKKSLTSFLGSHAKRLESMMKLADGVEDPTSENIQTGGIRGNSKIIERLAH 997

Query: 1116 K-FLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEM 1174
            K F  +E   + F+K   ++++    +PG  +G + +QS+GEP TQMTL TFH AG   M
Sbjct: 998  KIFGVSERQIEVFVKTCINRYLWKRVEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 1057

Query: 1175 NVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            N+T G+PR++EI+   +K I TP+IT  L
Sbjct: 1058 NITQGVPRIKEIIN-GAKKISTPIITAEL 1085



 Score = 49.3 bits (116), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 1  CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
          C+TCG     CPGHFG+++LV+PV+N    + +  +LK IC  C
Sbjct: 47 CETCGADFHECPGHFGYLNLVLPVFNVGYMSNILDILKCICKSC 90


>gi|401826841|ref|XP_003887513.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon hellem ATCC
            50504]
 gi|392998519|gb|AFM98532.1| DNA-directed RNA polymerase subunit beta' [Encephalitozoon hellem
            ATCC 50504]
          Length = 1314

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 305/995 (30%), Positives = 473/995 (47%), Gaps = 184/995 (18%)

Query: 244  PSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDS 303
            P    ++ + + E+++EL  F    ++             +  V+VPP   R PS   D 
Sbjct: 201  PLTALNVFKMMKEDDYELLGFSESPER-----------LIIQNVIVPPSCIR-PSVSMDD 248

Query: 304  --VMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGK----NA 357
                E   T+ +S+++  N  L    + + +   +I   W +LQ    +L + +      
Sbjct: 249  EGTNEDDITIKISEIVHTNKVLKEG-IEKGNPLNLINEDWDHLQLQCALLINSELPQVGI 307

Query: 358  AGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLT 417
             GQ     GI Q L+ K G FR  L GKRV+++ R+VISPDP L++ E+GIP   A  LT
Sbjct: 308  PGQP--VRGIVQRLKGKNGRFRCNLSGKRVDFSGRTVISPDPNLSIEEVGIPERMAKILT 365

Query: 418  YPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAI 477
              ERVT +N  KL+  ++NG E +PGA +                   +G K        
Sbjct: 366  ISERVTSFNKKKLQSLVLNGPEKYPGANYV------------------VGEKFK----RF 403

Query: 478  VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 537
            +  GK       G++V RHL DGD+VL NRQP+LH+ SIM+H V+V    KTLR +   C
Sbjct: 404  LMYGKRDTELKHGEIVERHLLDGDMVLFNRQPSLHRMSIMSHKVKV-HNSKTLRFNECVC 462

Query: 538  STYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
            + YNADFDGDEMNVH PQ E +RAEA  +++ +N  V P +G+P+ +  QD I    L+T
Sbjct: 463  TPYNADFDGDEMNVHVPQTEKARAEASILMSVSNNIVTPRHGEPIIAATQDFITGLYLIT 522

Query: 598  KKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWT 657
             KDTF +R+ F Q                       L+S   +  + + PAI KP  L+T
Sbjct: 523  GKDTFFDRERFGQ-----------------------LVSYFSETRINVKPAIKKPVELFT 559

Query: 658  GKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHK 717
            GKQ++ A++                     F+ +   A    D+  +  GK    N+  K
Sbjct: 560  GKQLVEALIK------------------DSFYGSSEGAMSLQDKSISLIGK----NRSFK 597

Query: 718  DKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY----G 773
              S                         + ++  ++I  N    G +DK+          
Sbjct: 598  SFS-------------------------DPNDGSVVILDNAYYFGRLDKSIIGGENKKDS 632

Query: 774  LVHTVQELYGSNTAGT-LLSALSRLFTVFLQMHGFTCGVDDLL---ILKDKERERKNHLH 829
            L++ + ++  SN A   +++++++L + +L   GF+ G+DD+    IL+ K+    N   
Sbjct: 633  LIYAIMKV--SNKAAVRVMNSITKLCSRYLGEVGFSIGLDDVQPGPILRQKKEMVVN--K 688

Query: 830  GSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNK---H 886
            G  E   ++   +  LE   E+                        +M+++S LN+    
Sbjct: 689  GYSECKNKILEHSKRLESNEEV-----------------------LEMEISSILNRIREE 725

Query: 887  TSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVS 946
              S  I EL        + +N  + M   G+KGSK+N  Q+ + +GQQ + G R+P  + 
Sbjct: 726  CGSICIKEL--------SIRNSPNTMQACGSKGSKINVSQMVACVGQQIVSGTRIPNGMD 777

Query: 947  GKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRC 1006
             + LP F      P + GF+++ F  GL   E++FH ++GREGLVDTAVKT+ +GY+QR 
Sbjct: 778  DRCLPHFRKGSKTPESKGFVLNSFFDGLTSPEFFFHAVSGREGLVDTAVKTAETGYMQRR 837

Query: 1007 LIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNK 1066
            L+K LE L I YD SVR+++  +VQF YGED +D      +S+ D     ER   + ++K
Sbjct: 838  LMKALEDLSIQYDGSVRNSNMEVVQFAYGEDQID----PVMSEGDDPFNLERVFLQSKSK 893

Query: 1067 F-----CDKGSHTF------VMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAE---- 1111
            F       +  + F      V+   ++ I K    +   +  +I  L + ++   E    
Sbjct: 894  FLRNLDLSQTPYPFELKEQDVVDNLRKSIPKGYPVKRIVNKRFIQSLLEFIESKREDRFL 953

Query: 1112 ---KFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHL 1168
                F   F  +  AK  F   +  K +  + +PG  VG +A QS+GEP TQMTL TFH 
Sbjct: 954  LDGTFYSYFSCDGFAKI-FFSTISQKMMDLIIEPGTTVGAIAGQSIGEPGTQMTLKTFHF 1012

Query: 1169 AGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            AG   MN+TLG+PRL+EI+  A  +I TP+I   L
Sbjct: 1013 AGVASMNITLGVPRLKEIIN-AVCNISTPIINAEL 1046



 Score = 42.4 bits (98), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TCG+    C GHFG + LV+PV+N  L     + L  +C  C
Sbjct: 67  CATCGEGLATCIGHFGEVKLVLPVFNIGLIKSTISTLNCLCKSC 110


>gi|321475339|gb|EFX86302.1| hypothetical protein DAPPUDRAFT_45101 [Daphnia pulex]
          Length = 1389

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 273/868 (31%), Positives = 418/868 (48%), Gaps = 145/868 (16%)

Query: 364  ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVT 423
            + G+ Q L+ K+G FR  L GKRVN++ R+VISPDP L ++++G+P   A  LTYP  V 
Sbjct: 341  SRGLVQRLKGKQGRFRGNLSGKRVNFSGRTVISPDPNLRIDQVGVPELIAKLLTYPTLVN 400

Query: 424  PWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKD 483
              N+  +R  + NG +IHPGA    +K S +        R ++ R L             
Sbjct: 401  EANIELMRKLVRNGPDIHPGAIFLKEKDSKLTRSLKYGNRETLARNLK------------ 448

Query: 484  SDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNAD 543
                  G ++ RH+ D D+VL NRQP+LHK SIM H  ++L    T R++   C+ YNAD
Sbjct: 449  -----RGDLIERHMMDEDIVLFNRQPSLHKLSIMCHRAKILP-HLTFRLNECVCTPYNAD 502

Query: 544  FDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFL 603
            FDGDEMN+H PQ E +RAEA  ++   +  V P NG+ L + IQD I  A LLT KD F 
Sbjct: 503  FDGDEMNLHLPQTEEARAEALILMGNKSNLVTPRNGELLIAAIQDFITGAYLLTLKDAFF 562

Query: 604  NRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLL--PAIWKPEPLWTGKQV 661
            +R + CQ++ S                   +++  E  ++  L  P I KP  +W+GKQ+
Sbjct: 563  DRAKTCQMVAS-------------------MLAGDEVNMVIKLPPPCIQKPAAMWSGKQI 603

Query: 662  ITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSG 721
             + +L      RP                              + G   K N   K K  
Sbjct: 604  FSLIL------RP------------------------------NPGNPIKVNLRTKGKEY 627

Query: 722  KKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF---ADYGLVHTV 778
             K                 K++E  +++  LL+  ++++ G +DK+     +   + + +
Sbjct: 628  SK-----------------KNEEFCVNDGFLLVRNSEVLAGCVDKSTIGSGSKINIFYVL 670

Query: 779  QELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL----LILKDKERERKNHLHGSEEI 834
               YG + A   +  L R+ + ++   GF+ G+ D+     +LK+K++   +     +E 
Sbjct: 671  LRDYGEDFAIQAMWKLCRVASYYMMNRGFSIGIGDVTPGKTLLKEKQKLLDSGYSKCDEY 730

Query: 835  GKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINE 894
             + + +  L    G  ++   L+S+I K + G  D A      ++      H S+S +  
Sbjct: 731  IRLLTIGQLPCLPGCNVEE-SLESKILKELSGIRDQAGEVCKKEL------HPSNSPL-- 781

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
                            +M+ SG+KGS +N  Q+ + +GQQ L GKRVP     ++LP F 
Sbjct: 782  ----------------VMSKSGSKGSYINISQMIACVGQQALNGKRVPNGFEDRSLPHFK 825

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
                 P A GF+ + F +GL P E++FH M GREGLVDTAVKT+ +GY+QR LIK+LE L
Sbjct: 826  RHSKIPAAKGFVSNSFYSGLTPTEFFFHTMGGREGLVDTAVKTADTGYMQRRLIKSLEDL 885

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGVDV-------HQTSFISKFDALAAR----------E 1057
               YD +VR++ G I+QF YG DG+D            F    D + A           +
Sbjct: 886  CCQYDSTVRNSAGEIIQFVYGGDGLDPTYMEAKDRPVDFQRTLDHIKAASPYPDEEPLDD 945

Query: 1058 RGRGRGRNKFCDKGSHTFVMGRNQEM-IYKKCSGQLDASNAYIMELPDALKDNAEKFADK 1116
                   N   +    T  +    E+ ++ +   +   S   I ++        EK  ++
Sbjct: 946  NELEHAFNTIMETDFKTLGIDFKHELRVFVESQVKRIKSVREIYQMDSRALHPVEKHLER 1005

Query: 1117 FLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNV 1176
                ++   +F    K K+  +  +PG  VG L +QS+GEP TQMTL TFH AG   MN+
Sbjct: 1006 ITVGQLV--EFCDFAKEKYERAKIEPGTAVGALCAQSIGEPGTQMTLKTFHFAGVASMNI 1063

Query: 1177 TLGIPRLQEILTIASKDIKTPVITCPLL 1204
            T G+PR++EI+  ASK I TPVI+  LL
Sbjct: 1064 TQGVPRIKEIIN-ASKAISTPVISTQLL 1090



 Score = 45.8 bits (107), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRR 52
           C TCG+    C GHFG+IDL +PV++   F     +L+ IC  C H   + +
Sbjct: 74  CGTCGKGLEDCVGHFGYIDLELPVFHVGYFKATINVLQTICKTCSHVMLTEK 125


>gi|452002907|gb|EMD95365.1| hypothetical protein COCHEDRAFT_1129734 [Cochliobolus
           heterostrophus C5]
          Length = 1779

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 257/737 (34%), Positives = 380/737 (51%), Gaps = 113/737 (15%)

Query: 1   CKTCGQRQFL-CPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVR 59
           C TCG   FL CPGH GHI+L VPVY+    + L  LL+  C +CH  K +R +V + V 
Sbjct: 62  CGTCGLTNFLGCPGHCGHIELPVPVYHLTFIDQLLRLLRGKCAYCHQLKFARVQVNEFVS 121

Query: 60  KLELIIKGDIIAAKSLDLDL-----PSESSNPEDSDVSNKSSCSMVTPRGNY-------- 106
           KL LI  G +  A  +   +      S     +DS+        +++ R +Y        
Sbjct: 122 KLRLIRCGLVQEANDMHEHINLEKGKSSKRTADDSEDEENDHDDIISQRNSYVKKCMKRA 181

Query: 107 ----DNVRNLKPQEWTSLQFAEAKLALLQFLKIETTK---CGNCKAKNPRISKPTFGWIH 159
                + R+++ +       ++A+  +++    E  K   CGNC+  +P   K     I 
Sbjct: 182 GISKHDARSVREKNEA---ISDARRQVVKEFYAELVKRRICGNCQGISPTYRKDRGIKIF 238

Query: 160 MNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARR 219
              +   D          + +     +   D+ A  D  A + H          D A+  
Sbjct: 239 RKPLSQKD-------KTKMAQAEKRIQNPLDVLARRDAKAKKQHVHADEGVADLDPASEE 291

Query: 220 H--------QKGSGA-VPSGFKKQKDLFSGPLL--------PSDVKDIIEKLWENEFELC 262
                    Q+  G+ V +  +  +   +   L         ++VK  +  L+ENE E+ 
Sbjct: 292 DEDIDMEDIQQADGSLVATEARMARKTKTDETLEAAQEYVNSTEVKAAMTLLFENESEMM 351

Query: 263 SFISDMQQQGFGKKA----GHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQ 318
             +       +G K+       +FF   ++VPP KFR   K GDS+ E  +  L   +L+
Sbjct: 352 RLL----YSPYGSKSLVDVSADMFFTQAIIVPPNKFRPEDKTGDSIAESSKNKLYKGILE 407

Query: 319 A--NI-YLANAYVNQPD-------NAKVIVARWMNLQQSVNVLFD-------GKNAAGQR 361
           A  +I  ++     +P+       N   +  +++NLQ +VN L D       G+ A    
Sbjct: 408 ACESIRQISQEMQGKPNELGFRQRNFDDMQTQFVNLQGAVNALIDRDANPVQGRGAVTNA 467

Query: 362 DMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPER 421
           D   GI Q LEKKEGLFR+ +MGKRVN+A RSVISPDP +  NEIG+PP FA++LTYPE 
Sbjct: 468 D---GIKQGLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFAVKLTYPEP 524

Query: 422 VTPWNVVKLRDSIINGAEIHPGATHYLD----KLSTMRLPPNKKMRISIGRKLDTSRGAI 477
           VT  N   L++++ING +  PGA H ++    ++ +++   N + R+++  +L       
Sbjct: 525 VTNHNFYDLKEAVINGPDKWPGA-HAIENEFGQIISLK-KKNYEERLALANQL------- 575

Query: 478 VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 537
           + P     N  + K V+RHL +GDVV++NRQPTLHKPS+MAH  RVL GEKT+RMHYANC
Sbjct: 576 LAPSNSYSNGAKNKKVHRHLNNGDVVIMNRQPTLHKPSMMAHRARVLPGEKTIRMHYANC 635

Query: 538 STYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
           +TYNADFDGDEMN+HFPQ+E++RAEA  I + ++QY+  + G PLR LIQDHI     L+
Sbjct: 636 NTYNADFDGDEMNMHFPQNELARAEAMTIADTDHQYLSATAGKPLRGLIQDHISMGVWLS 695

Query: 598 KKDTFLNRDEFCQLLYS-----SGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKP 652
            KDTF  RD++ QLLYS      G ++SG                    +  ++PAI KP
Sbjct: 696 NKDTFFTRDQYHQLLYSCLRPEDGHTTSG-------------------RLETVVPAILKP 736

Query: 653 EPLWTGKQVITAVLNHI 669
           +P+WTGKQ+IT VL +I
Sbjct: 737 QPMWTGKQIITTVLKNI 753



 Score =  355 bits (911), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 209/477 (43%), Positives = 280/477 (58%), Gaps = 31/477 (6%)

Query: 748  SEEKLLIYKND-LVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
            SEE+ +I K+  L+ G++DK Q   A  GL++ + E YG   AG  LS + RL T  L M
Sbjct: 778  SEEQFVIVKDGALLTGIMDKGQIGPAAGGLINGIYEAYGETIAGRALSIIGRLLTKMLHM 837

Query: 805  HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI--KLKSEIEK 862
              F+CGV+DL++    E  R   L  +E+IG  V  + + L +  +IDP   +L+  +E 
Sbjct: 838  RAFSCGVEDLILTGQGEEARLVELRKAEKIGFEVASKYVTL-NAEKIDPTNPELRRRLEA 896

Query: 863  AMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV 922
             +R   D      D+ +T+  N   SS+V   +L + L+K   KN +  MT SGAKGS V
Sbjct: 897  VLRD--DTKQHGLDL-LTNTANSKISSAVTAAVLPDKLIKAFPKNQMQAMTGSGAKGSMV 953

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  QIS +LGQQ LEG+RVP M+SGKTLP F P++ + RAGG+I++RFLTG+RPQEYYFH
Sbjct: 954  NANQISCNLGQQVLEGRRVPVMISGKTLPCFKPFETSVRAGGYIVNRFLTGVRPQEYYFH 1013

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVH 1042
             MAGREGL+DTAVKTSRSGYLQRC+IK +E L++ YD SVRD+DGS+VQF YGEDG+D  
Sbjct: 1014 MMAGREGLIDTAVKTSRSGYLQRCIIKGMEGLRVEYDTSVRDSDGSMVQFLYGEDGLDTT 1073

Query: 1043 QTSFISKFDALAAR--------ERGRGRGRNKFCDKGSHT-----------FVMGRNQEM 1083
            +  +++ F   A                 R    +   H            F        
Sbjct: 1074 KQKYLNDFKFQAQNFYSLAQTLHTAEAYPRVSSAEAAEHNKKAAKKAKKGDFTAMDPATA 1133

Query: 1084 IYKKCSGQLDASNAYIM---ELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLA 1140
            +Y         S  ++    E  D   D   K   K    E+ K+ F +++  K++ SL 
Sbjct: 1134 VYTPSRHSGSTSETFLQAKREYCDKNPDKLLKNKKKDEEGEILKRTFEQMLDLKYLRSLV 1193

Query: 1141 QPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTP 1197
            +PGE VG++A QS+GEPSTQMTLNTFHLAG    NVTLGIPRL+EI+  AS  I TP
Sbjct: 1194 EPGEAVGVVAGQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASAKISTP 1250


>gi|357138371|ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Brachypodium distachyon]
          Length = 1400

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 304/962 (31%), Positives = 451/962 (46%), Gaps = 153/962 (15%)

Query: 287  VLVPPIKFRLPSK---GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMN 343
            + VPP+  R PS+   G     E   T +L  ++ AN +L     +     K     W  
Sbjct: 254  IAVPPVPIR-PSRFVAGTTMSNEDSITSILRNIVNANSHLKLTIQDGQVPMKCFTW-WEQ 311

Query: 344  LQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
            LQ +V    +   ++ Q     G+ Q L+ K G FR  L GKR  +  R+VISPDP L +
Sbjct: 312  LQDNVIEYINSDASSLQDSKDCGLIQRLKGKTGRFRGNLSGKRTEHTGRTVISPDPNLRI 371

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMR 463
             E+ IP   A  LTYPERVT +N+ KLR  I NG   HPGA   +        P   K+ 
Sbjct: 372  TEVAIPVLMARVLTYPERVTYYNIEKLRQCIRNGPHKHPGANFIIQ-------PDETKLH 424

Query: 464  ISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRV 523
            ++     D SR A        D ++ G +V RHL+DGD+VL NRQP+LH+ SIM+H  R+
Sbjct: 425  LNY---CDRSRAA-------RDLKY-GCIVERHLEDGDIVLFNRQPSLHRMSIMSHRARI 473

Query: 524  LKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLR 583
            +   +TLR + + C+ YNADFDGDEMN+H PQ E +R EA+ ++   +    P NG+ L 
Sbjct: 474  MPW-RTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAFLLMGVQSNLCTPKNGEILV 532

Query: 584  SLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVL 643
            +  QD + S+ L+T+KDTF +R  F           + L S+ G   + +         L
Sbjct: 533  ASTQDFLTSSFLVTRKDTFYDRSYF-----------TLLCSYLGDAMENI--------DL 573

Query: 644  PLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKK 703
            P  PAI KP  LWTGKQ+ + ++                  P    K   N   +     
Sbjct: 574  P-TPAIIKPVELWTGKQLFSVLVR-----------------PNACTKVFLNLTVE----- 610

Query: 704  NDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRG 762
                   K    HK++  K   V+E               E     +  + ++N +L+ G
Sbjct: 611  ------EKVYIKHKERDKKAITVLE---------------ETMCPNDGFVYFRNSELLSG 649

Query: 763  VIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKD 819
             + K    +    G+   +   Y S+ A + ++ L++    F+  HGF+ GVDD+   + 
Sbjct: 650  QLGKKTLGNGNKEGMFSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGQS 709

Query: 820  KERERKNHL-HGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMK 878
              +++K  +  G EE  K   L AL  +   +  P              G +     + +
Sbjct: 710  LNKKKKVIIDEGYEECNK---LIALYSKGHLKPQP--------------GCSRAQTLESQ 752

Query: 879  MTSQLNKHTSSSVINELLSEGLLKPTG-KNWISLMTTSGAKGSKVNFQQISSHLGQQELE 937
            ++  LNK      + E   +  +     +N   +M+  G+KGS +N  Q+   +GQQ + 
Sbjct: 753  ISCVLNK------LRETAGDDCMSTLHWRNSPLIMSQCGSKGSPINISQMVVCVGQQSVG 806

Query: 938  GKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKT 997
            G R P     +TLP F      P A GF+ + F TGL   E++FH M GREGLVDTAVKT
Sbjct: 807  GCRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGLTASEFFFHTMGGREGLVDTAVKT 866

Query: 998  SRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS----KFDAL 1053
            + +GYL R L+K LE L + YD +VR+A G IVQF YG+DG+D  +           D L
Sbjct: 867  ADTGYLSRRLMKGLEDLSVFYDQTVRNASGGIVQFVYGDDGMDPVKMEGKGGSPLNLDQL 926

Query: 1054 AARERGRGRGRNKFCDKGSHTFVMGRNQEMIYK------KCSGQLDASNAYIMELPDALK 1107
              + +     R    D  S   ++    + ++K      +CS +L       +E  D +K
Sbjct: 927  FMKVKATCPQRGH--DTLSPDVILQMFNDTLFKQETSSGRCSDKLKEMLTKFLE--DRVK 982

Query: 1108 --------------------DNAEKFADKFLSNEMAK--QDFLKLVKHKFVLSLAQPGEP 1145
                                 + E+     +S   AK  Q FL     ++   + + G  
Sbjct: 983  MLRSTRRALHIDEDHVGRRDSSVEECIAADISGISAKQLQVFLDTCFSRYHSKIIEAGAS 1042

Query: 1146 VGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLV 1205
            VG + + S+GEP TQMTL TFH AG   MNVTLG+PR++EI+  A+K   TP+IT  LL 
Sbjct: 1043 VGPIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-AAKKTSTPIITTELLS 1101

Query: 1206 GK 1207
            G+
Sbjct: 1102 GQ 1103



 Score = 48.5 bits (114), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC      CPGHFG+I L +PV+N   FN +  +LK IC  C
Sbjct: 79  CATCHGSYTECPGHFGYIKLALPVFNVGYFNKILAVLKCICKGC 122


>gi|115459150|ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
 gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa Japonica Group]
 gi|38347455|emb|CAD41360.2| OSJNBa0076N16.24 [Oryza sativa Japonica Group]
 gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa Japonica Group]
 gi|116310339|emb|CAH67354.1| OSIGBa0130B08.14 [Oryza sativa Indica Group]
 gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa Indica Group]
 gi|215768005|dbj|BAH00234.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195112|gb|EEC77539.1| hypothetical protein OsI_16437 [Oryza sativa Indica Group]
          Length = 1383

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 302/974 (31%), Positives = 442/974 (45%), Gaps = 181/974 (18%)

Query: 287  VLVPPIKFRLPS---KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMN 343
            + VPP+  R PS    GG    E   TV+L  +   N  L           K     W +
Sbjct: 249  IAVPPVPIR-PSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMKCFDC-WQH 306

Query: 344  LQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
            LQ  V    +    +       G+ Q L+ K G FR  L GKR  Y  R+VISPDP L +
Sbjct: 307  LQLQVVEYINSDAPSLPESQHRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVISPDPNLRI 366

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMR 463
             E+ IP   A  LTYPERV+ +N+ KLR  I NG   HPGA   +        P   K+ 
Sbjct: 367  TEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQ-------PDGTKLH 419

Query: 464  ISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRV 523
            +    +   +R          D ++ G +V RHL+DGD+VL NRQP+LH+ SIM+H  R+
Sbjct: 420  LKYCDRRIAAR----------DLKY-GCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARI 468

Query: 524  LKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLR 583
            +   +TLR + + C+ YNADFDGDEMN+H PQ E +R EA  ++   N    P NG+ L 
Sbjct: 469  MPW-RTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILV 527

Query: 584  SLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVL 643
            +  QD + S+ L+T+KD F +R  F           S L S+ G   + +         L
Sbjct: 528  ASTQDFLTSSFLVTRKDNFYDRSSF-----------SLLCSYLGDAMENI--------DL 568

Query: 644  PLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKK 703
            P  PA+ KP  LWTGKQ+ + ++                  P    K   N         
Sbjct: 569  PT-PALIKPIELWTGKQLFSVLVR-----------------PNACTKVFLN--------- 601

Query: 704  NDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRG 762
                 L+   K++K   G   E                  E     +  + ++N +L+ G
Sbjct: 602  -----LTVKEKIYKTPKGSTLE-----------------PEAMCPNDGFVYFRNSELLSG 639

Query: 763  VIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKD 819
             + KA   +    G+  T+   Y S+ A + ++ L++    F+  HGF+ GVDD+   + 
Sbjct: 640  QVGKATLGNGNKDGMFSTLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEH 699

Query: 820  KERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKM 879
              +E+K  + G     K  H            D I   S+    ++ G +AA        
Sbjct: 700  LNQEKKMKIDGGY---KDCH------------DLIASYSKGALRLQPGCNAA-------- 736

Query: 880  TSQLNKHTSSSVINELLSE-GLLKPTGKNWIS---LMTTSGAKGSKVNFQQISSHLGQQE 935
              Q  + + + V+NE+  E G +     +W +   +M+  G+KGS +N  Q+ + +GQQ 
Sbjct: 737  --QTLEQSITRVLNEIREEAGKVCMNTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQS 794

Query: 936  LEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAV 995
            + G+R P     +TLP F      P A GF+ + F TGL   E++FH M GREGLVDTAV
Sbjct: 795  VGGRRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAV 854

Query: 996  KTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE-----------DGVDVHQT 1044
            KT+ +GY+ R L+K LE L + YD +VR+A G IVQF YG+           DG  ++  
Sbjct: 855  KTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMDPAKMEGKDGKPLNLD 914

Query: 1045 SFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKK-----------CSGQLD 1093
                K  A   +             +G +T   G   +++  K           CS +  
Sbjct: 915  QLFMKVMATCPQ-------------RGQNTLSPGEILQILNDKLSEHDASSDDGCSEKFK 961

Query: 1094 ASNAYIMEL---------------PDALKDNAEKFADKFLSNEMA-----KQDFLKLVKH 1133
                Y +E                 D + +    F +   +N         Q FL     
Sbjct: 962  QLLTYFLEDRIKLLKSTRRALLLDEDHVGERHSSFEESIAANISGISVKQLQVFLDTCLS 1021

Query: 1134 KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKD 1193
            ++ L   + G  +G + +QS+GEP TQMTL TFH AG   MNVTLG+PR++EI+  A+K 
Sbjct: 1022 RYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-AAKK 1080

Query: 1194 IKTPVITCPLLVGK 1207
            I TP+IT  LL  K
Sbjct: 1081 ISTPIITAELLSEK 1094



 Score = 48.1 bits (113), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC      CPGHFG++ L +PV+N   FN +  +LK IC  C
Sbjct: 76  CSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSC 119


>gi|407461850|ref|YP_006773167.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
            Nitrosopumilus koreensis AR1]
 gi|407045472|gb|AFS80225.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
            Nitrosopumilus koreensis AR1]
          Length = 1263

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 302/987 (30%), Positives = 459/987 (46%), Gaps = 172/987 (17%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P+ F ++ ++    LLP  +++   ++ + + EL S+     +  +        F L   
Sbjct: 164  PTIFVEKTEIGEHRLLPITIRERFSQILDEDLELLSYDPITARPEW--------FVLQAF 215

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
             VPP+  R PS   ++ +  E   T  +  +++ N  L  +         +IV   ++L 
Sbjct: 216  PVPPVTVR-PSIILETGIRSEDDLTHKMVDIIRVNQRLKES--KDAGTPPLIVQDLVDLL 272

Query: 346  QSVNVLFDGKNAAG--QRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
            Q     +     +G  Q    SG     + Q L+ KEG FR  L GKRV+++ R+VISPD
Sbjct: 273  QYHTTTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPD 332

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP 458
            P L ++E+G+P   A++LT PE VT WN+ ++R  +ING E  PG  + +        P 
Sbjct: 333  PNLDLSEVGVPEVVAMKLTIPEIVTEWNIERMRKLVINGPEKFPGVNYIVR-------PD 385

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
              K+R+         R  I +  +       G +V RHL DGD+V+ NRQP+LH+ SIMA
Sbjct: 386  GVKIRLDFVE----DRSTIAETLEI------GYLVERHLADGDIVMFNRQPSLHQMSIMA 435

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H VRVL G KT R+H + C  YNADFDGDEMN+H PQ E +RAEA  ++   +Q + P  
Sbjct: 436  HYVRVLPG-KTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAILLMRVQDQLISPRY 494

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            G P+   ++D +  A LLTK DT L+  EF  L        + LG +T            
Sbjct: 495  GGPIIGALRDFVTGAYLLTKDDTTLSIQEFSNL--------AMLGGYT------------ 534

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
              + LP      K  P +TGKQ+ +                    LP+DF          
Sbjct: 535  --DPLPKPATKTKDGPAYTGKQLFSLF------------------LPKDF---------- 564

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND 758
                         T+K  K   GK K+VV                          I   +
Sbjct: 565  ---------NYVITSKWSKGTKGKPKDVV--------------------------IKNGE 589

Query: 759  LVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
            L+ GVIDK+         ++H + + YG+    T L+++  +   F+  +GF+ G  DL+
Sbjct: 590  LISGVIDKSSIGAEEPESVLHRIAKDYGNAVGKTFLNSILIMVKQFITHYGFSYGYGDLI 649

Query: 816  ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYF 875
            +    +++++  L   +E    V     +L D      +KL     + MR   +A  AY 
Sbjct: 650  V---PDKDKQQILDDIQETYDIVD----DLTDQFNKGTLKLT----RGMR-PEEALEAYI 697

Query: 876  DMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQE 935
              ++    +K  + S  N+ L          N   +M T+GA+GS +N  Q++  LGQQ 
Sbjct: 698  VNELGKARDK--AGSTANDCLP-------ADNAGKIMATTGARGSSLNVGQMAGALGQQS 748

Query: 936  LEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAV 995
              G R+    + + L  +   D  P A GF+   +  GL   E++FH M GREGLVDTAV
Sbjct: 749  RRGNRLHDGYNNRALTHYQEHDNNPDAHGFVKSNYREGLSALEFFFHAMGGREGLVDTAV 808

Query: 996  KTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAA 1055
            +T +SGY+QR LI  LE +++ YD +VRD  G IVQF YGEDG+DV ++     F+    
Sbjct: 809  RTQQSGYMQRRLINALEHIRLEYDGTVRDPHGHIVQFLYGEDGIDVQKSDHGEAFNP--- 865

Query: 1056 RERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFAD 1115
                R        D G          E + KK +   +     ++              D
Sbjct: 866  ---SRLVESQTIIDSGKK--ATKEEIETLAKKYTKTFNPRLTTLV-------------TD 907

Query: 1116 KFLSNEMAKQDFLKLVKHKFVL---SLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRG 1172
              L + ++K     + K   +L   +  +PG+ VG++ +QS+GEP TQMTL TFH AG  
Sbjct: 908  ALLESGLSKDGIETVCKKGLLLYNKAKVEPGQAVGIITAQSIGEPGTQMTLRTFHFAGIK 967

Query: 1173 EMNVTLGIPRLQEILTIASKDIKTPVI 1199
            E NVTLG+PRL E++    K + TP +
Sbjct: 968  ERNVTLGLPRLIELVDARKKPV-TPTM 993



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVE 55
           C TCG     CPGHFGH++L  PV +    + +Y LL+  C  C   K  + +++
Sbjct: 61  CLTCGNTAARCPGHFGHLELAEPVLHIAFIDNIYKLLQSTCRSCARLKVPQEDLD 115


>gi|407917443|gb|EKG10751.1| RNA polymerase alpha subunit [Macrophomina phaseolina MS6]
          Length = 1466

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 305/992 (30%), Positives = 459/992 (46%), Gaps = 178/992 (17%)

Query: 281  IFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
            +F    V  PP+  R       +  E   T  L  ++Q +  L  A + +    + I+ +
Sbjct: 262  MFIWQYVPAPPVTIRPSVAQEAATTEDDITNKLGDIVQIS-SLIRAGLAKGLPVQTIMEQ 320

Query: 341  WMNLQQSVNVLFD----GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            W  LQ  + +  +    G  A G      G CQ L+ K+G FR  L GKRV+++ R+VI 
Sbjct: 321  WDFLQLQIALYVNSDVPGLQAQGVGKHIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVIG 380

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PDP L++ E+ +P   A  +TYPE+V+ +N+ KLR  +  G   HPGA   + +      
Sbjct: 381  PDPNLSIEEVAVPERVAKNMTYPEKVSRYNLEKLRGCVRRGKFKHPGANFIVKQ------ 434

Query: 457  PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
               ++M + + +KL    G + Q  +       G +V RH++DGD+VL NRQP+LHK SI
Sbjct: 435  -DGRRMVLEVLQKL----GKLEQTAEQLQI---GDVVERHIEDGDIVLFNRQPSLHKLSI 486

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            ++H  +V +  +T R++   C+ YNADFDGDEMN+H PQ E +R EA  ++   N    P
Sbjct: 487  LSHKAKV-RPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAIELMGVKNNLATP 545

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
             NG P+ + IQD I  A L T+KD FL+R  F  L+ S          F G   +     
Sbjct: 546  KNGTPIIAAIQDFITCAFLTTRKDLFLDRKTFA-LMCSY--------MFNGDSVRDPETG 596

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
            +  +  LP  P I KP+ LWTGKQV   ++                  P    K   N D
Sbjct: 597  KYHKIDLP-PPVILKPQALWTGKQVWNVLMR-----------------PYKASKVLVNLD 638

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEK--LLI 754
                + K +K                                      K+L+E+   L++
Sbjct: 639  AACKQYKGNK--------------------------------------KDLNEDDAWLVV 660

Query: 755  YKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
              ++++ GV+DK+   D     + + +   +G + A   ++ L++L   +L   GF+ GV
Sbjct: 661  RNSEVMCGVMDKSTVGDGKKDSVFYVMMRDFGPDYAVQAMNRLAKLSARWLTNRGFSIGV 720

Query: 812  DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAA 871
             D +    K  ERK  L     I  +   + +EL +  +++            R  G   
Sbjct: 721  SD-VTPGSKLVERKTKLIQDAYIQAK---KIVELYNTGKLE------------RDAGCDE 764

Query: 872  VAYFDMKMTSQLNKHTSSS---VINELLSEGLLKPTGKNWIS--LMTTSGAKGSKVNFQQ 926
                + K++  LNK  + +     +EL           NW S  +M   G+KGS +N  Q
Sbjct: 765  ELTMENKISGVLNKVRAEAGDICFSEL----------TNWNSPLIMAKCGSKGSNINVAQ 814

Query: 927  ISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAG 986
            + + +GQQ + G RV      +TLP F      P A GF+ + F +GL P E+ FH M+G
Sbjct: 815  MVACVGQQIIGGARVQDGFQDRTLPHFAKGGRLPDAKGFVANSFYSGLTPYEFIFHAMSG 874

Query: 987  REGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD------ 1040
            REGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++   IVQF YG+D +D      
Sbjct: 875  REGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDDTVRNSASQIVQFRYGDDNLDPVDMEG 934

Query: 1041 -VHQTSFISKF---------------------DALAARERGRGRGRNKFCDKGSH-TFVM 1077
                 +F+  F                     D   AR   + R   ++ + G    F +
Sbjct: 935  KAKPVNFVRSFDHARTTTWDNEERGLLPDEIRDIARARLDAKRREIQRYSETGQELQFTV 994

Query: 1078 G-----------RN-----QEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKF-LSN 1120
                        RN     Q+ I+KK +G ++      +E+ +  K   E  AD    SN
Sbjct: 995  NDPGMVDQKESKRNFYNEVQDFIFKK-AGDVERLTTRFVEVQNENKQKGEAIADDVGFSN 1053

Query: 1121 ---------EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGR 1171
                         + FL L   K   S  QPG  VG + +QS+GEP TQMTL TFH AG 
Sbjct: 1054 IVDGVSKISRRCLEYFLDLCLTKHAQSHVQPGHAVGAVGAQSIGEPGTQMTLKTFHFAGV 1113

Query: 1172 GEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
              M++T G+PR++EI+  ASK I TP+ITC L
Sbjct: 1114 AGMSITQGVPRIKEIIN-ASKTISTPIITCEL 1144



 Score = 47.8 bits (112), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C+TCG+    C GHFGH+ L +P ++     ++  +L  IC  C +    +ASR+   K 
Sbjct: 76  CETCGEDLKSCNGHFGHVKLALPAFHIGYLKMIIEVLHCICKECSNILLDEASRQRYTKS 135

Query: 58  VRKLEL 63
           +R+ +L
Sbjct: 136 LRRPDL 141


>gi|167044137|gb|ABZ08820.1| putative RNA polymerase Rpb1, domain 2 [uncultured marine
            crenarchaeote HF4000_APKG5C13]
          Length = 1268

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 316/987 (32%), Positives = 462/987 (46%), Gaps = 176/987 (17%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P+ F ++  L    LLP  +++   ++ +++  L ++  D  +  +        F L V+
Sbjct: 164  PTIFIEKTKLGENRLLPITIRERFSQIIDDDLRLLNYNVDTARPEW--------FILQVL 215

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNL- 344
             VPP+  R PS   ++ +  E   T  +  +++ N  L  +   +     +IV   ++L 
Sbjct: 216  PVPPVTVR-PSIILETGIRSEDDLTHKMVDIIRVNQRLKES--KEAGTPPLIVQDLVDLL 272

Query: 345  QQSVNVLFDGK-NAAGQRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
            Q      FD + +   Q    SG     + Q L+ KEG FR  L GKRV+++ R+VISPD
Sbjct: 273  QYHCTTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPD 332

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP 458
            P L + E+G+P   A +LT PE VT WN+ KL+  +ING    PG  + +        P 
Sbjct: 333  PNLDLGEVGVPMSIATKLTIPEIVTEWNIEKLKKLVINGPNTFPGVNYIVR-------PD 385

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
              K+R+      DT + A        D    G +V RHL DGDVVL NRQP+LH+ SIMA
Sbjct: 386  GVKIRLDFVE--DTLQVA--------DQLEIGYLVERHLSDGDVVLFNRQPSLHQMSIMA 435

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H VRVL G KT R+H + C  YNADFDGDEMN+H PQ E +RAEA  ++    Q + P  
Sbjct: 436  HHVRVLPG-KTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAMLLMRVQEQLISPRF 494

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            G P+   ++D I  A LLTK DT L + EF           + LG +             
Sbjct: 495  GGPIIGGLRDFITGAYLLTKDDTTLTKQEFSNF--------AMLGGY------------- 533

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
              E LP      K   L+TGKQ+ +                    LP DF          
Sbjct: 534  -DEKLPEPKINNKNGLLYTGKQLFSLF------------------LPSDF---------- 564

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND 758
                         T+K  K   GK+K+VV                          I   +
Sbjct: 565  ---------NFVMTSKWSKGIHGKQKDVV--------------------------IKNGE 589

Query: 759  LVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
            LV GVIDK+         ++H + + YG+  A   L+++  +   F+  +GF+ G  DL 
Sbjct: 590  LVSGVIDKSSIGAEEPESVLHRIAKDYGNEKAKKFLNSILIIIKQFITNYGFSYGYSDLE 649

Query: 816  ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYF 875
            +    E++R+  L   +E   +V          A+I   K K  + K +RG   +  A  
Sbjct: 650  L---SEKDRQAILTDLQETYDKV----------ADIIVQKNKGTL-KGLRGMTVSETA-- 693

Query: 876  DMKMTSQLNKHTSSSVI--NELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQ 933
            + K+T +L +    + +  N  L +        N   +M T+GA+GS +N  Q++  LGQ
Sbjct: 694  EAKITYELARARDRAGVTANSNLED-------DNAGKIMATTGARGSALNVGQMAGVLGQ 746

Query: 934  QELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDT 993
            Q   GKR+      +TLP F   D  P + GF+   F  GL   E++FH M GREGLVDT
Sbjct: 747  QSRRGKRLHTGYGNRTLPHFKEHDDNPDSHGFVKSNFRDGLSVLEFFFHAMGGREGLVDT 806

Query: 994  AVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDAL 1053
            AV+T +SGY+QR LI   E +++ YD +VRD  G I+QF YGEDG+DV      +K D  
Sbjct: 807  AVRTQQSGYMQRRLINAFEHIRLEYDGTVRDPHGHIIQFLYGEDGIDV------AKSDHG 860

Query: 1054 AARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKF 1113
             A    R        D GS        ++ I         A N  +  + +         
Sbjct: 861  EAFNINRLIESESIIDSGSKA-----TKDEITSISKKYTKAFNPKLTSMVN--------- 906

Query: 1114 ADKFLSNEMAKQDFLKLVKHKFVL---SLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
             D   +++++K+    + K    L   S  +PG+ VG++ +QS+GEP TQMTL TFH AG
Sbjct: 907  -DGLHNSKLSKEGLENVCKKGLELYDKSKVEPGQAVGIVTAQSIGEPGTQMTLRTFHTAG 965

Query: 1171 RGEMNVTLGIPRLQEILTIASKDIKTP 1197
              E NVTLG+PR+ E++  A K   TP
Sbjct: 966  IAEKNVTLGLPRIIELVD-ARKKPSTP 991



 Score = 49.3 bits (116), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 31/59 (52%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVR 59
           C TCG     CPGHFGH++L  PV +    + ++ LL   C  C   K  +  +++ ++
Sbjct: 61  CLTCGNTSARCPGHFGHVELAEPVLHIAFIDNIHKLLNATCRSCSRLKVPQEVLDEFLK 119


>gi|46116898|ref|XP_384467.1| hypothetical protein FG04291.1 [Gibberella zeae PH-1]
          Length = 1694

 Score =  384 bits (987), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 262/721 (36%), Positives = 376/721 (52%), Gaps = 84/721 (11%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC   Q  CPGH GHI L VPVY+P+  +  Y LLK  C +C  F+  ++E+ K + K
Sbjct: 62  CTTCNLNQATCPGHPGHIQLPVPVYHPVFMDQAYRLLKATCVYCKGFRLPQKELHKYMCK 121

Query: 61  LELIIKGDIIAAKSLDL----DLPSESSNPEDSDVSNKSSC------SMVTPRGNYDN-- 108
           L+L+  G I  A  + +    DL  E  N  + +   +         ++   R  Y +  
Sbjct: 122 LKLLQHGLIQEAHMVGVIGENDLAIELGNFSELESEAEEEGASSSIDNVTRARDKYVDKC 181

Query: 109 VRNLKPQEWTSLQ-----FAEAKLALLQFLKIETTK---CGNCKAKNPRISKPTFGWIHM 160
           +R +K +   + +      +E +  +++    E TK   C NC   +P   K  F  +  
Sbjct: 182 LRGIKIKRGDTKRGKHEGSSEMRREVIKEFLAEITKRRLCANCNGISPSYRKDRFVKVFE 241

Query: 161 NGMPHAD----IRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQ--- 213
             +   +     + NL +   +     G  ++K  G SSD    +  S   T   +Q   
Sbjct: 242 RSLSDKEKAKMAQKNLKQSDAMARVQQGRTKQKPDGYSSDEGVADVVS--PTLEKSQLAG 299

Query: 214 -DTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQ-QQ 271
            D         +  +P+    Q+ + +      +V   + +L+  E EL S + + +   
Sbjct: 300 DDAEQDTEMMDADEIPASSASQRYISA-----MEVHARLSELFTKEQELVSLLYNAKPAT 354

Query: 272 GFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDS-VMEHPQTVLLSKVLQANIYLA------ 324
              KK    +FFL  +LVPP ++R  ++ G+S + E  Q  L   +L+    +A      
Sbjct: 355 RSSKKVTPEMFFLTTILVPPNRYRPEARTGESEISEAQQNSLYKNILRGCGTIARLHKQL 414

Query: 325 ---NAYVNQPDNAKVIVARWMNLQQSVNVLFDG-----KNAAGQRDMASGICQLLEKKEG 376
              NA VNQ   A      W  LQ SVN L D      + AA +R+   GI Q LEKKEG
Sbjct: 415 KEENADVNQLHQA------WTELQDSVNSLIDKDKNPVQGAAAKRN-EDGIKQKLEKKEG 467

Query: 377 LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
           LFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA +LTYPE VT  N   ++ ++IN
Sbjct: 468 LFRKNMMGKRVNYAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFRDMQQAVIN 527

Query: 437 GAEIHPGATHYLDKLSTMRLPPNKKM--RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVY 494
           G +  PGA    ++   +    NK +  R+S+  +L       + P   +      K VY
Sbjct: 528 GVDKWPGAFAIENENGQIVNLRNKSVDDRVSLANQL-------LAPTSSNAARTRNKKVY 580

Query: 495 RHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFP 554
           RHL +GDVVL+NRQPTLHKPSIM H VRVL GEKT+RMHYANC+TYNADFDGDEMN+HFP
Sbjct: 581 RHLTNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEMNMHFP 640

Query: 555 QDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYS 614
           Q+EV+RAEA  I + ++QY+  + G PLR LIQDHI  +  L  +DTF  + ++ QL+Y+
Sbjct: 641 QNEVARAEALQIADTDHQYLSGTAGKPLRGLIQDHISVSVGLCNRDTFFTKGDYQQLVYN 700

Query: 615 SGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRP 674
           +    SG        G+R+ +         + PAI KP P WTGKQVIT +L ++   +P
Sbjct: 701 ALRPESG-----HIVGERIEL---------VAPAIIKPVPRWTGKQVITTILKNM---QP 743

Query: 675 P 675
           P
Sbjct: 744 P 744



 Score =  345 bits (885), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 206/500 (41%), Positives = 286/500 (57%), Gaps = 51/500 (10%)

Query: 748  SEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
            SEE  +++++ + + G++DK+Q   +  G++H + E+YG   AG LLS+L RL T +L M
Sbjct: 766  SEEGTVLFQDGEFISGILDKSQIGPSSGGIIHAIHEIYGPAVAGKLLSSLGRLLTRYLNM 825

Query: 805  HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALEL-EDGAEIDPIKLKSEIEKA 863
              F+CG++DL +    E  R+  L  ++ +G  V      L E     DP+ L+  +E+ 
Sbjct: 826  RAFSCGMEDLRLTPKGEEARRAALKPADNVGIEVATALTSLAETTRPNDPLFLE-RLEEV 884

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
            MR   D      D+ M  +L+K T S +    +  GL K    N +  MTTSGAKGS+VN
Sbjct: 885  MRD--DKKQEGLDLLMKERLSKVTDS-IEKATMPHGLEKAFPFNQMQAMTTSGAKGSRVN 941

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
               IS +LGQQ LEG+RVP MVSGK+LP F P++   RAGG+I+ RFLTG+RPQEYYFH 
Sbjct: 942  ANLISCNLGQQVLEGRRVPIMVSGKSLPCFDPFETHARAGGYIVQRFLTGIRPQEYYFHH 1001

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGL+DTAVKTSRSGYLQRC+IK +E L ++YD +VRDADGS++QF YGEDG+D  +
Sbjct: 1002 MAGREGLIDTAVKTSRSGYLQRCVIKGMEGLTVAYDTTVRDADGSMIQFMYGEDGLDACK 1061

Query: 1044 TSFISKF----------------------------DALAARERGRGRGRNKFCDKGSHTF 1075
              ++  F                            DA+    +   +  N    +     
Sbjct: 1062 QKYLEDFSFILENVTSEAAQLRYDPSVGERLGMHRDAITKYMKKALKPTNINEPEAKDLK 1121

Query: 1076 VMGRNQEMIYKKCSGQLD-------ASNAYIMELPDALKDNAEKFA-DKFLSNEMA---- 1123
             + +N    +   S   +        S  +  ++   LK+N +    DK   N+ A    
Sbjct: 1122 YLKKNDPKAHDPISSHFNPATTAFATSEKFFWKMTKYLKENKDGLVRDKSDKNKQALSRV 1181

Query: 1124 ---KQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGI 1180
               K++   L   K++ SL +PGE VG++A QSVGEPSTQMTLNTFHLAG    NVTLGI
Sbjct: 1182 SLNKKNAEMLFAMKYLRSLVEPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGI 1241

Query: 1181 PRLQEILTIASKDIKTPVIT 1200
            PRL+EIL  AS  I TP ++
Sbjct: 1242 PRLREILMTASNKISTPSMS 1261


>gi|400597994|gb|EJP65714.1| RNA polymerase Rpb1 [Beauveria bassiana ARSEF 2860]
          Length = 1945

 Score =  384 bits (987), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 250/712 (35%), Positives = 367/712 (51%), Gaps = 74/712 (10%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC      CPGH GHI L VPVY+ +  + +Y LL+  C +C  F+   +++ K + K
Sbjct: 62  CTTCNLNHLYCPGHPGHIKLPVPVYHTIFVDQVYHLLRSACLYCKGFRLPAKDLHKYMCK 121

Query: 61  LELI------------------IKGDIIAAKSLDLD--LPSESSNPEDSDVSNKSSCSMV 100
           L L+                  I  D+ A+ SL+LD     + ++  D+    +     +
Sbjct: 122 LRLLQHGLVHEAHIVGAIGEIDISDDLEASVSLELDGSEAEDDTSSIDNVTRKREKYVQL 181

Query: 101 TPRGNYDNVRNLKP--QEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNPRISKPTFG 156
             RG     R++K    E T     E    + +FL   I+  +C +C   +P   K  F 
Sbjct: 182 CLRGGRKTRRDIKKGKHEGTGQMRREV---IKEFLSEVIKKRECASCNGISPTYRKDAFV 238

Query: 157 WIHMNGMPHADIRANLIRGCNLGE--------TFSGGEEEKDLGASSDVDAPETHSFNGT 208
            I    +   +      R    G+        T +   +E  +  +S  D  E  S +  
Sbjct: 239 KIFEKALSDKEKVKMAARNLKYGDAMSRLYQKTMAKKPQENGITHNSSEDEGEDESPSSQ 298

Query: 209 FPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDM 268
               QD         + +  +  ++        + P +V   + +L+  E EL S + + 
Sbjct: 299 DVEMQDADEEETTTTNTSHSAAHQRY-------ISPMEVHARLVELFNKEQELVSLLYNA 351

Query: 269 QQQGFGKKAGH-SIFFLGVVLVPPIKFRLPSKGGDS-VMEHPQTVLLSKVLQANIYLANA 326
           +            +FF+ V+LVPP +FR  ++ GD+ + E PQ  L   +L+AN  +A  
Sbjct: 352 KPPTKRTTKTTPDMFFITVLLVPPNRFRPEARTGDTEISEAPQNSLYKNILRANGKIAKL 411

Query: 327 YVNQPDNAKVIVA---RWMNLQQSVNVLFDGKNA----AGQRDMASGICQLLEKKEGLFR 379
           + N  + +  I A    W+ LQ+SVN L D   +    A  +    GI Q LEKKEGLFR
Sbjct: 412 HSNVQNGSSDITALHHAWVELQESVNTLIDRNKSPVQGAAAKRAEDGIKQKLEKKEGLFR 471

Query: 380 QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
           + +MGKRVNYA RSVISPDP +  NEIG+PP FA +LTYPE VT  N   ++ ++ING  
Sbjct: 472 KNMMGKRVNYAARSVISPDPNIDTNEIGVPPVFAQKLTYPEPVTSHNFRDMQQAVINGVS 531

Query: 440 IHPGATHYLDKLSTMRLPPNKKM--RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
             PGA    D+   +    NK +  RIS+  +L       + P   +  + + K V+RH+
Sbjct: 532 KWPGAIAIEDENGQIVNLRNKSVDDRISLANQL-------LAPTNANAPKTKNKKVHRHM 584

Query: 498 QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            +GDVVL+NRQPTLHKPS+M H VRVL GEKT+RMHYANC++YNADFDGDEMN+HFPQ+E
Sbjct: 585 TNGDVVLMNRQPTLHKPSMMGHRVRVLPGEKTIRMHYANCNSYNADFDGDEMNMHFPQNE 644

Query: 558 VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
           V+R+EA  I + ++QY+  + G PLR LIQDH+  +  L  +DTF  + ++  L+YS+  
Sbjct: 645 VARSEALQIADTDHQYLSGTAGKPLRGLIQDHLSVSIALCNRDTFFTKGDYHSLIYSALR 704

Query: 618 SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
             SG           +L  R   E++P  PAI KP   WTGKQVIT +L ++
Sbjct: 705 PESG----------HILSER--LELVP--PAIIKPVHRWTGKQVITTILKNL 742



 Score =  346 bits (888), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 210/483 (43%), Positives = 283/483 (58%), Gaps = 37/483 (7%)

Query: 748  SEEKLLIYKN-DLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
            SEE +++ K+ +LV G++DK+Q      GLVH   E YG+  A  LLS L RL T  L M
Sbjct: 767  SEEGVVLVKDGELVTGILDKSQIGQSSGGLVHAAHEAYGAAIASKLLSCLGRLLTRLLNM 826

Query: 805  HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAM 864
              F+CG+DDL + +  E+ R   L  + ++G ++  + + L D  +     L   +E+  
Sbjct: 827  RAFSCGMDDLRLTEAGEKARLQALAQASDMGLKIASKYVSLPDNTDPTNNLLLERLEEVS 886

Query: 865  RGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNF 924
            R   D      D+ M ++ ++  ++ V    +  GL KP  +N +  MTTSGAKGS+VN 
Sbjct: 887  RE--DKKQECLDLLM-NEGSRDITAEVQKVCIPNGLEKPFPRNQMQAMTTSGAKGSRVNA 943

Query: 925  QQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCM 984
              IS +LGQQ LEG+RVP MVSGKTLP F P++    + G+I  RFLTG+RPQEYYFH M
Sbjct: 944  SLISCNLGQQVLEGRRVPLMVSGKTLPCFKPFETHIGSAGYIRSRFLTGIRPQEYYFHHM 1003

Query: 985  AGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT 1044
            AGREGL+DTAVKTSRSGYLQRC+IK LE L +SYD SVRDADGS++QF YGEDG+DV + 
Sbjct: 1004 AGREGLIDTAVKTSRSGYLQRCIIKGLEGLMVSYDASVRDADGSVIQFLYGEDGLDVTKQ 1063

Query: 1045 SFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCS--------------- 1089
             +++ FD +          + K+  K   T    R+  M Y K +               
Sbjct: 1064 KYLTNFDFI-LENVASEVVQLKYDTKVVETLTANRDAFMKYMKSAVKHAKSKGTTSKDPL 1122

Query: 1090 -GQLD-ASNAYIME------LPDALKDNA-----EKFADKFLSNEMA--KQDFLKLVKHK 1134
             G  +  +N + M       + + +K+N      EK + K   N  A  +++   L   K
Sbjct: 1123 IGSYNPTTNTFAMSELFYEAMSNYVKENKSGLIREKSSHKQAQNSAALTRKNAETLFALK 1182

Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
            +  SL +PGE VG++A QSVGEPSTQMTLNTFHLAG    NVT GIPRL+EIL  AS  I
Sbjct: 1183 YQRSLIEPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHAATNVTQGIPRLREILMTASAVI 1242

Query: 1195 KTP 1197
             TP
Sbjct: 1243 STP 1245


>gi|149234447|ref|XP_001523103.1| DNA-directed RNA polymerase III largest subunit [Lodderomyces
            elongisporus NRRL YB-4239]
 gi|146453212|gb|EDK47468.1| DNA-directed RNA polymerase III largest subunit [Lodderomyces
            elongisporus NRRL YB-4239]
          Length = 1450

 Score =  384 bits (986), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 299/991 (30%), Positives = 462/991 (46%), Gaps = 188/991 (18%)

Query: 286  VVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANI---YLANAYVNQPDNAKVIVARWM 342
            V + P +     S   D  ++  + V  S +++A I      N  + Q D  ++ VA ++
Sbjct: 266  VCIRPSVMMDAQSNEDDLTVKLTEIVWTSSMIKAGIAKGISMNNLMEQWDYLQLSVAMYI 325

Query: 343  NLQQSVNVLFDGKNAAGQRDMAS-----GICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
            N   +   L       G     S     G CQ L+ K+G FR  L GKRV+++ R+VISP
Sbjct: 326  NSDSANPALIPSVGGGGGGGSKSSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISP 385

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DP L ++E+ +P   A  LTYPE+ T +N  KL+  IING + HPGA +Y+ K +    P
Sbjct: 386  DPNLKIDEVAVPDRVAKVLTYPEKCTRYNKRKLQQLIINGPDHHPGA-NYVQKQNE---P 441

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIM 517
              + +R     KL  S                G +V RH++DGDVVL NRQP+LH+ SI+
Sbjct: 442  GKRNLRFGDRHKLARSLQV-------------GDLVERHIEDGDVVLFNRQPSLHRLSIL 488

Query: 518  AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
            +H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA N++   N  + P 
Sbjct: 489  SHYAKI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPK 547

Query: 578  NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISR 637
            +G+P+ +  QD I  + L++ KDTFL+R    QLL  S +S + +  F   P        
Sbjct: 548  SGEPIIAATQDFITGSYLISHKDTFLDRASLVQLL--SMMSDADI-HFDIPP-------- 596

Query: 638  SEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADK 697
                     PAI+KP  LWTGKQV + ++                               
Sbjct: 597  ---------PAIFKPVMLWTGKQVFSLLI------------------------------- 616

Query: 698  QSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN 757
                      K +K +K+  + + K K       G   E   N        +  ++I  +
Sbjct: 617  ----------KPNKQSKVIINLNAKNKTCHPAPKGFPPEMSTN--------DGYVVIRGS 658

Query: 758  DLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             ++ G++DK+   D     + + +   YG + A   ++ +++L   +L   GF+ G++D 
Sbjct: 659  QILSGLMDKSTLGDGKKDSVFYVILRDYGPHEAAAAMNRMAKLCARYLGNRGFSIGIND- 717

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
             +    E  +K  L   +   K   L  L      E  P   + E  +A  GG       
Sbjct: 718  -VTPATELRQKKELMVEQAYLKCDQLIDLFNRGKLETQPGCNEEETLEAKIGG------- 769

Query: 875  FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
                + S++ +   +  I EL  + L  P       +M T G+KGS VN  Q+ + +GQQ
Sbjct: 770  ----LLSKVREEVGNECIREL--DSLNAPL------IMATCGSKGSIVNVSQMVAVVGQQ 817

Query: 935  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
             + G RVP     ++LP F      P++ GF+ + F +GL P E+ FH ++GREGLVDTA
Sbjct: 818  IISGHRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTA 877

Query: 995  VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ-------TSFI 1047
            VKT+ +GY+ R L+K+LE L   YD +VR++   IVQF YG DG+D +         +FI
Sbjct: 878  VKTAETGYMSRRLMKSLEDLSAQYDDTVRNSSNGIVQFTYGGDGLDPYDMEGDAKPVNFI 937

Query: 1048 SKFD-----ALAARERG------------RGRGRNKFCDKGSHTFVMGRNQEMIYKKCSG 1090
             ++D       +A ++               R R +    G      G+ ++ +      
Sbjct: 938  RQWDHAYNLTFSANDKSLLPYQIMDVVEQTLRPREEALKTGDEE---GKTEDQLVD---- 990

Query: 1091 QLDASNAYIMELPDALKDNAEKFA---------------------DKFLSNEMAK----- 1124
            Q DA   +   + D +   AE+ A                     D+ + +E A      
Sbjct: 991  QKDAQREFYRSVRDFMAQKAERLARLREERGLKPYFTFDKQSSDQDEMVLDEDASKVNAI 1050

Query: 1125 -----------QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGE 1173
                       + FL    +K+  +  + G  VG + +QS+GEP TQMTL TFH AG   
Sbjct: 1051 DQLMKISKKTVKIFLTQCLYKYSRAKVEAGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAS 1110

Query: 1174 MNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            MNVTLG+PR++EI+  ASK I TP+I   L+
Sbjct: 1111 MNVTLGVPRIKEIIN-ASKTISTPIINAVLV 1140



 Score = 45.1 bits (105), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC      C GHFGHI L +PV++   F  + T+L+ IC  C
Sbjct: 68  CSTCHGNLASCQGHFGHIKLALPVFHVGYFKAIITVLQCICKNC 111


>gi|407464207|ref|YP_006775089.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
            Nitrosopumilus sp. AR2]
 gi|407047395|gb|AFS82147.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
            Nitrosopumilus sp. AR2]
          Length = 1263

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 310/993 (31%), Positives = 463/993 (46%), Gaps = 184/993 (18%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P+ F ++ ++    LLP  +++   ++ + + EL S+     +  +        F L  +
Sbjct: 164  PTIFVEKTEIGEHRLLPITIRERFSQILDEDLELLSYDPITARPEW--------FILQAL 215

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
             VPP+  R PS   ++ +  E   T  +  +++ N  L  +   +     +IV   ++L 
Sbjct: 216  PVPPVTVR-PSIILETGIRSEDDLTHKMVDIIRVNQRLKES--KEAGTPPLIVQDLVDLL 272

Query: 346  QSVNVLFDGKNAAG--QRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
            Q  +  +     +G  Q    SG     + Q L+ KEG FR  L GKRV+++ R+VISPD
Sbjct: 273  QYHSTTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPD 332

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP 458
            P L ++E+G+P   A++LT PE VT WN+ ++R  +ING E  PG  + +        P 
Sbjct: 333  PNLDLSEVGVPEQVAMKLTIPEIVTEWNIERMRKLVINGPEKFPGVNYIVR-------PD 385

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
              K+R+         R  I +  +       G ++ RHL DGD+V+ NRQP+LH+ SIMA
Sbjct: 386  GVKIRLDFVE----DRSTIAETLEI------GYLIERHLADGDIVMFNRQPSLHQMSIMA 435

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H VRVL G KT R+H + C  YNADFDGDEMN+H PQ E +RAEA  ++   +Q + P  
Sbjct: 436  HYVRVLPG-KTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAILLMRVQDQLISPRY 494

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            G P+   ++D +  A LLTK DT L+  EF           + LG +T            
Sbjct: 495  GGPIIGALRDFVTGAYLLTKDDTTLSVQEFSNY--------AMLGGYT------------ 534

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
              E LP      K  P +TGKQ+ +                    LP+DF          
Sbjct: 535  --EPLPKPATKTKDGPAYTGKQLFSLF------------------LPKDF---------- 564

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND 758
                         T+K  K   G +K+VV                          I   +
Sbjct: 565  ---------NYVLTSKWSKGTKGPEKDVV--------------------------IKNGE 589

Query: 759  LVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
            L+ GVIDK          ++H + + YG+      L+++  +   F+  +GF+ G  DL 
Sbjct: 590  LISGVIDKTSIGAEEPESVLHRITKDYGNAVGKNFLNSILIMVKQFITHYGFSYGYGDL- 648

Query: 816  ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYF 875
                 E   KN     ++I +   + A +L D      +KL     + M+   +A  AY 
Sbjct: 649  -----EVPEKNVQQILDDIQETYDVVA-DLTDQYNKGTLKLT----RGMK-AEEALEAYI 697

Query: 876  DMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQE 935
              ++     K  + +  N+ L +        N   +M T+GA+GS +N  Q++  LGQQ 
Sbjct: 698  VNELGKAREK--AGATANDSLDDS-------NAGKIMATTGARGSALNVGQMAGALGQQS 748

Query: 936  LEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAV 995
              G R+    S + L  +   D  P A GF+   + TGL   E++FH M GREGLVDTAV
Sbjct: 749  RRGNRMNDGYSNRALTHYQEHDSNPDAHGFVKSNYRTGLTALEFFFHAMGGREGLVDTAV 808

Query: 996  KTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDA--L 1053
            +T +SGY+QR LI  LE +++ YD +VRD  G IVQF YGEDG+DV ++     F+A  L
Sbjct: 809  RTQQSGYMQRRLINALEHIRLEYDGTVRDPHGHIVQFLYGEDGIDVQKSDHGEAFNASRL 868

Query: 1054 AARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMEL-PDAL------ 1106
            A  +     G+    D+           + + KK +      N  + EL  DAL      
Sbjct: 869  AESQTIIDSGKKATKDE----------IDTLAKKYTKTF---NPRLTELVTDALHKSNLS 915

Query: 1107 KDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTF 1166
            KD  E    K LS     Q               +PG+ VG++ +QS+GEP TQMTL TF
Sbjct: 916  KDGVEAVCKKGLSLYNNAQ--------------VEPGQAVGIITAQSIGEPGTQMTLRTF 961

Query: 1167 HLAGRGEMNVTLGIPRLQEILTIASKDIKTPVI 1199
            H AG  E NVTLG+PRL E++    K + TP +
Sbjct: 962  HFAGIKERNVTLGLPRLIELVDARKKPV-TPTM 993



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVR 59
           C TCG     CPGHFGHI+L  P+ +    + +Y LL+  C  C   K  + ++E   R
Sbjct: 61  CLTCGNTAARCPGHFGHIELAEPILHIAFIDNIYKLLQSTCRSCARLKVPQEDLEAFKR 119


>gi|358057625|dbj|GAA96623.1| hypothetical protein E5Q_03293 [Mixia osmundae IAM 14324]
          Length = 1866

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/493 (45%), Positives = 297/493 (60%), Gaps = 39/493 (7%)

Query: 748  SEEKLLIYKN-DLVRGVIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
            +EE  +I+ N DL+ G++DK+QF    +G+VH+V ELYGS TA  LL  LSRLFT FLQ 
Sbjct: 950  NEEGDVIFVNGDLLVGILDKSQFGATSFGMVHSVHELYGSLTANKLLGILSRLFTKFLQH 1009

Query: 805  HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP---IKLKSEIE 861
              FTC +DDL++ K  ++ R   L  + + G +  LE ++LED     P     LK   E
Sbjct: 1010 RAFTCRMDDLILSKRGDKARSTLLATANDRGSKATLEYVKLEDADLSKPETLRNLKMRYE 1069

Query: 862  KAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSK 921
            + +R   D  +A  D  M       TS  VI+  L +GL+K   +N +  MT SGAKGS 
Sbjct: 1070 EVLRD--DNKLAGLDAAMKGATGGLTSE-VISACLPDGLVKFFPENNMQTMTVSGAKGSN 1126

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            VN  QIS  LGQQELEG+RVP MVSGKTLPSF  +D AP+AGG++  RFLTG+RPQE+YF
Sbjct: 1127 VNVSQISCLLGQQELEGRRVPVMVSGKTLPSFKAFDTAPKAGGYVAGRFLTGVRPQEFYF 1186

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV 1041
            HCMAGREGL+DTAVKTSRSGYLQRCL+K+LE ++  YD++VR++DGS++QF YGEDG+DV
Sbjct: 1187 HCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGIRAHYDHTVRNSDGSVLQFAYGEDGLDV 1246

Query: 1042 HQTSFISKFD--------------------ALAARERGRGRG-RNKFCDKGSHTFVM--- 1077
             +   +++ D                    AL + +   G+  R    D  +H  VM   
Sbjct: 1247 TKQRHLNELDFSARNFATLQESWDTAGLINALRSSDDAAGKHMREAISDPDAHPPVMSKY 1306

Query: 1078 ------GRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLV 1131
                  G   E  +K     + A+   I++   + +     +A       + K  F  L+
Sbjct: 1307 FPGSNIGSMSESFHKTLQAYVKANPQRIIKSSSSTRAAWPAYARNVKGGLIDKHAFRALM 1366

Query: 1132 KHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIAS 1191
            + +++ SL   GE VG++A+Q VGEPSTQMTLNTFH AG G  NVTLGIPRL+EI+  AS
Sbjct: 1367 QIRYLRSLVDAGEAVGVIAAQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTAS 1426

Query: 1192 KDIKTPVITCPLL 1204
               KTP +  P L
Sbjct: 1427 FKPKTPSMHMPFL 1439



 Score =  316 bits (809), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 196/502 (39%), Positives = 288/502 (57%), Gaps = 70/502 (13%)

Query: 223 GSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI----------------S 266
           G GA      K++      +LP++ +  + +L++NE  +   I                S
Sbjct: 441 GLGAAKDNASKRQRQTERIILPAEARGQLRRLFQNERAILDLIFAPHGSASRNRTKPLRS 500

Query: 267 DMQQQGF------GKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQAN 320
             Q  G          A   IFF+ VV VPP +FR  ++ G+SV++HPQT LLS++++A 
Sbjct: 501 LFQSIGMIPSTSADTGASPDIFFMDVVAVPPSRFRPMAQMGESVLDHPQTTLLSQIIKAK 560

Query: 321 IYLAN--------------AYVNQPDNAKVI----VARWMNLQQSVNVLFDG-KNAA-GQ 360
              A               +  ++P N   +    +A  + +Q +VN L D  KN    +
Sbjct: 561 ESFARQAQRLRAARRGTIISGESKPLNPAAVYEQVIAEIIKIQVAVNSLVDSTKNPTIMK 620

Query: 361 RDMA--SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTY 418
           R M   +G+ Q+LEKK+GLFR  +MGKRVN+A RSVISPD  +  NEIG+PP+FA  LT+
Sbjct: 621 RGMEPPTGVKQILEKKDGLFRMNMMGKRVNFAARSVISPDVNIEPNEIGVPPHFARGLTF 680

Query: 419 PERVTPWNVVKLRDSIINGAEIHPGATHYL---DKLSTM--RLPPNKKMRIS---IGRKL 470
           PE VT  N+ +L+  II G    PGA H +   DK   M  R+  + ++  +   +   +
Sbjct: 681 PEPVTKHNLHQLQQMIIRGPHEWPGA-HAIERDDKTVIMLDRMSADDRLAQAQQIMAPTI 739

Query: 471 DTSRGAIVQPG--KDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK 528
              RG  V  G    +  +   K V+RHL DGD++++NRQPTLHKPS+M H  +VL GE+
Sbjct: 740 LNKRGLSVTSGLAHTATPQLNYK-VHRHLVDGDILIMNRQPTLHKPSMMCHRAKVLTGER 798

Query: 529 TLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQD 588
           TLRMHYANC++YNADFDGDEMN+HFPQ  +++AEA  I N +NQY+ P++G+PLR LIQD
Sbjct: 799 TLRMHYANCNSYNADFDGDEMNMHFPQTHIAQAEARFIANTDNQYLVPTSGNPLRGLIQD 858

Query: 589 HIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPA 648
           H+V+   +T KDT+  R+++ Q++Y +  +      +TG  G   L+S          PA
Sbjct: 859 HVVAGVHMTSKDTWFTREQYHQIIYGALRTED---DYTGG-GTIKLVS----------PA 904

Query: 649 IWKPEPLWTGKQVITAVLNHIT 670
           I +P+ LW+GKQ+I+ VL +IT
Sbjct: 905 ILRPQRLWSGKQIISTVLLNIT 926



 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 13/125 (10%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C +C   +  CPGHFGHI+L   V+NPL  +    LL+ +C FC HF      V     K
Sbjct: 79  CASCQLGEMACPGHFGHIELPATVFNPLFISNAVQLLRGMCHFCGHFLMPAAVVASYTGK 138

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
           LEL+ +G +  A  LD             D+  + S      RG      ++KP++ T +
Sbjct: 139 LELLSRGLVTEADGLD-------------DLIAQYSSKQTQKRGKQAKREDIKPEDETMI 185

Query: 121 QFAEA 125
           +  EA
Sbjct: 186 EGDEA 190


>gi|408395819|gb|EKJ74992.1| hypothetical protein FPSE_04812 [Fusarium pseudograminearum CS3096]
          Length = 1694

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 261/721 (36%), Positives = 375/721 (52%), Gaps = 84/721 (11%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC   Q  CPGH GHI L VPVY+P+  +  Y LLK  C +C  F+  ++E+ K + K
Sbjct: 62  CTTCNLNQATCPGHPGHIQLPVPVYHPIFMDQAYRLLKATCVYCKGFRLPQKELHKYMCK 121

Query: 61  LELIIKGDIIAAKSLDL----DLPSESSNPEDSDVSNKSSC------SMVTPRGNYDN-- 108
           L+L+  G I  A  + +    DL  E  N  + +   +         S+   R  Y +  
Sbjct: 122 LKLLQHGLIQEAHMVGVIGENDLAIELGNFSELESEAEEEGASSSIDSVTRARDKYVDKC 181

Query: 109 VRNLKPQEWTSLQ-----FAEAKLALLQFLKIETTK---CGNCKAKNPRISKPTFGWIHM 160
           +R +K +   + +      +E +  +++    E TK   C NC   +P   K  F  +  
Sbjct: 182 LRGIKIKRGDTKRGKHEGSSEMRREVIKEFLAEITKRRLCANCNGISPSYRKDRFVKVFE 241

Query: 161 NGMPHAD----IRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQ--- 213
             +   +     + NL +   +        ++K  G SSD    +  S   T   +Q   
Sbjct: 242 RSLSDKEKAKMAQKNLRQSDAMARVQQATTKQKPDGYSSDEGVADVVS--PTLEKSQLAG 299

Query: 214 -DTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQ-QQ 271
            D         +  +P+    Q+ + +      +V   + +L+  E EL + + + +   
Sbjct: 300 DDAEQDTEMMDADEIPASSASQRYISA-----MEVHARLSELFTKEQELITLLYNAKPAT 354

Query: 272 GFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDS-VMEHPQTVLLSKVLQANIYLA------ 324
              KK    +FFL  +LVPP ++R  ++ G+S + E  Q  L   +L+    +A      
Sbjct: 355 RSSKKVTPEMFFLTTILVPPNRYRPEARTGESEISEAQQNSLYKNILRGCGTIARLHKQL 414

Query: 325 ---NAYVNQPDNAKVIVARWMNLQQSVNVLFDG-----KNAAGQRDMASGICQLLEKKEG 376
              NA VNQ   A      W  LQ SVN L D      + AA +R+   GI Q LEKKEG
Sbjct: 415 KEENADVNQLHQA------WTELQDSVNSLIDKDKNPVQGAAAKRN-EDGIKQKLEKKEG 467

Query: 377 LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
           LFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA +LTYPE VT  N   ++ ++IN
Sbjct: 468 LFRKNMMGKRVNYAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFRDMQQAVIN 527

Query: 437 GAEIHPGATHYLDKLSTMRLPPNKKM--RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVY 494
           G +  PGA    ++   +    NK +  R+S+  +L       + P   +      K VY
Sbjct: 528 GVDKWPGAFAIENENGQIVNLRNKSVDDRVSLANQL-------LAPTSSNAARTRNKKVY 580

Query: 495 RHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFP 554
           RHL +GDVVL+NRQPTLHKPSIM H VRVL GEKT+RMHYANC+TYNADFDGDEMN+HFP
Sbjct: 581 RHLTNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEMNMHFP 640

Query: 555 QDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYS 614
           Q+EV+RAEA  I + ++QY+  + G PLR LIQDHI  +  L  +DTF  + ++ QL+Y+
Sbjct: 641 QNEVARAEALQIADTDHQYLSGTAGKPLRGLIQDHISVSVGLCNRDTFFTKGDYQQLVYN 700

Query: 615 SGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRP 674
           +    SG        G+R+ +         + PAI KP P WTGKQVIT +L ++   +P
Sbjct: 701 ALRPESG-----HIVGERIEL---------VAPAIIKPVPRWTGKQVITTILKNM---QP 743

Query: 675 P 675
           P
Sbjct: 744 P 744



 Score =  345 bits (885), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 207/500 (41%), Positives = 289/500 (57%), Gaps = 51/500 (10%)

Query: 748  SEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
            SEE  +++++ + + G++DK+Q   +  G++H + E+YG   AG LLS+L RL T +L M
Sbjct: 766  SEEGTVLFQDGEFISGILDKSQIGPSSGGIIHAIHEIYGPAVAGKLLSSLGRLLTRYLNM 825

Query: 805  HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALEL-EDGAEIDPIKLKSEIEKA 863
              F+CG++DL +    E+ R+  L  ++ +G  V      L E     DP+ L+  +E+ 
Sbjct: 826  RAFSCGMEDLRLTPKGEQARREALKPADNVGIEVATALTSLAETTRPNDPLFLE-RLEEV 884

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
            MR   D      D+ M  +L+K T S +    +  GL K    N +  MTTSGAKGS+VN
Sbjct: 885  MRD--DKKQEGLDLLMKERLSKVTDS-IEKATMPHGLEKAFPFNQMQAMTTSGAKGSRVN 941

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
               IS +LGQQ LEG+RVP MVSGK+LP F P++   RAGG+I+ RFLTG+RPQEYYFH 
Sbjct: 942  ANLISCNLGQQVLEGRRVPIMVSGKSLPCFDPFETHARAGGYIVQRFLTGIRPQEYYFHH 1001

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGL+DTAVKTSRSGYLQRC+IK +E L ++YD +VRDADGS++QF YGEDG+D  +
Sbjct: 1002 MAGREGLIDTAVKTSRSGYLQRCVIKGMEGLTVAYDTTVRDADGSMIQFMYGEDGLDACK 1061

Query: 1044 TSFISKF----------------------------DALAARERGRGRGRNKFCDKGSHTF 1075
              ++  F                            DA+    +   +  N    +     
Sbjct: 1062 QKYLEDFSFILENVTSEAAQLRYDPSVGERLGMHRDAITKYMKKALKPTNINEPEAKDLK 1121

Query: 1076 VMGRN----QEMI---YKKCSGQLDASNAYIMELPDALKDNAEKFA-DKFLSNEMA---- 1123
             + +N    Q+ I   +   +     S  +  ++   LK+N +    DK   N+ A    
Sbjct: 1122 YLKKNDPKAQDPISSHFNPATTAFATSEKFFWKMTKYLKENKDGLVRDKSDKNKQALSRV 1181

Query: 1124 ---KQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGI 1180
               K++   L   K++ SL +PGE VG++A QSVGEPSTQMTLNTFHLAG    NVTLGI
Sbjct: 1182 SLNKKNAEMLFAMKYLRSLVEPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGI 1241

Query: 1181 PRLQEILTIASKDIKTPVIT 1200
            PRL+EIL  AS  I TP ++
Sbjct: 1242 PRLREILMTASNKISTPSMS 1261


>gi|302901596|ref|XP_003048471.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729404|gb|EEU42758.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1674

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 258/723 (35%), Positives = 374/723 (51%), Gaps = 89/723 (12%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC   Q  CPGH GHI L VPVY+P+  +  Y LLK  C +C  F+  ++E+ K V K
Sbjct: 62  CTTCNLNQSTCPGHAGHIQLPVPVYHPVFMDQAYRLLKAACVYCKGFRLPQKELHKYVCK 121

Query: 61  LELIIKGDI--------IAAKSLDLDLPS----ESSNPEDSDVSNKSSCSMVTPRGNYDN 108
           L+L+  G I        I    L ++L      ES   E+ D ++  + +    R     
Sbjct: 122 LKLLQHGLIQEAHIVGAIGENDLAIELGDFSGLESEAEEEGDSNSIDNVTRARDRYVDKC 181

Query: 109 VRNLKPQEWTSLQ-----FAEAKLALLQFLKIETTK---CGNCKAKNPRISKPTFGWIHM 160
           +R +K +   + +      +E +  +++    E TK   C +C   +P   K  F  +  
Sbjct: 182 LRGIKVKRGETKRGKHEGASEMRRDIIKEFLAEITKRRICASCGGISPSYRKDRFVKVFE 241

Query: 161 NGMPHAD----IRANLIRGCNLGETFSGGEEEKDLGASSD-----VDAPETHSFNGTFPG 211
             +   +     + N  +   +        +++  G SSD     V +P          G
Sbjct: 242 RSLSDKEKAKMAQKNFKQADAMARVHQATTKQRPDGYSSDEGVADVGSPTREKAQTDEDG 301

Query: 212 T-QDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQ 270
             QDT        + AVP  +          +   +V+  + +L+  E EL + + + + 
Sbjct: 302 ADQDTDMPDADTTAAAVPQRY----------ISAMEVQARLNELFTKEQELMALLYNAKP 351

Query: 271 Q-GFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDS-VMEHPQTVLLSKVL-------QANI 321
                 K    +FFL +++VPP ++R  ++ G++ + E  Q  L   +L       Q + 
Sbjct: 352 AIRSSSKVTPDMFFLTILMVPPNRYRPEARTGEAQISEAQQNSLYKNILRGCGRIAQLHA 411

Query: 322 YLAN--AYVNQPDNAKVIVARWMNLQQSVNVLFDG-----KNAAGQRDMASGICQLLEKK 374
           YL    A VNQ   A      W  LQ+SVN L D      + AA +R+   GI Q LEKK
Sbjct: 412 YLKEERADVNQLHQA------WTELQESVNALIDKDKNPVQGAAAKRN-EDGIKQKLEKK 464

Query: 375 EGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSI 434
           EGLFR+ +MGKRVNYA RSVISPDP +  NEIG+PP FA +LTYPE VT  N   ++ ++
Sbjct: 465 EGLFRKNMMGKRVNYAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFRDMQQAV 524

Query: 435 INGAEIHPGATHYLDKLSTMRLPPNKKM--RISIGRKLDTSRGAIVQPGKDSDNEFEGKM 492
           ING +  PGA    ++   +    NK +  R+S+  +L       + P   S      K 
Sbjct: 525 INGVDKWPGAFAIENENGQIVNLRNKSVDDRVSLANQL-------LAPTSSSAARTRNKK 577

Query: 493 VYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVH 552
           VYRHL +GDVVL+NRQPTLHKPSIM H VRVL  EKT+RMHYANC+TYNADFDGDEMN+H
Sbjct: 578 VYRHLTNGDVVLMNRQPTLHKPSIMGHRVRVLPNEKTIRMHYANCNTYNADFDGDEMNMH 637

Query: 553 FPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLL 612
           FPQ+EV+RAEA  I + ++QY+  + G PLR LIQDHI  +  L  +DTF +R ++ QL+
Sbjct: 638 FPQNEVARAEALQIADTDHQYLSYTAGKPLRGLIQDHISVSVALCNRDTFFSRGDYQQLV 697

Query: 613 YSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRG 672
           Y++    SG        G+R+ +         + PA+ +P   WTGKQVIT +L ++   
Sbjct: 698 YNALRPESG-----HIVGERIEL---------VAPAVIRPVARWTGKQVITTILKNM--- 740

Query: 673 RPP 675
           +PP
Sbjct: 741 QPP 743



 Score =  360 bits (925), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 208/487 (42%), Positives = 291/487 (59%), Gaps = 38/487 (7%)

Query: 748  SEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
            SEE ++++++ + + G++DK+Q   +  G+VH V E+YG   AG LLS+L RL T +L +
Sbjct: 765  SEEGIVLFQDGEFITGILDKSQIGPSSGGVVHAVHEIYGPAIAGKLLSSLGRLLTRYLNV 824

Query: 805  HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG-AEIDPIKLKSEIEKA 863
              F+CG+DDL +  + E+ R+  L  +  +G  V    + LE      DP+ L+  +E+ 
Sbjct: 825  RAFSCGMDDLRLTPEGEKARREALVPANTVGLNVASSYVSLEQNPGPRDPLLLE-RLEEV 883

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
            MR   D+     D+ M   L+  T   V    +  GL KP  KN +  MTTSGAKGS+VN
Sbjct: 884  MRD--DSKQEGLDLLMKEGLSGITDK-VQTSCVPNGLEKPFPKNQMQAMTTSGAKGSRVN 940

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
               IS +LGQQ LEG+RVP MVSGK+LP F+P++   RAGG+I+ RFLTG+RPQEYYFH 
Sbjct: 941  ASLISCNLGQQVLEGRRVPIMVSGKSLPCFNPFETHARAGGYIVQRFLTGIRPQEYYFHH 1000

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGL+DTAVKTSRSGYLQRC+IK +E L ++YD +VRDADGS++QF YGEDG+DV +
Sbjct: 1001 MAGREGLIDTAVKTSRSGYLQRCVIKGMEGLTVAYDTTVRDADGSMIQFLYGEDGLDVTK 1060

Query: 1044 TSFISKFDAL---AARERGRGRGRNKFCDK-GSHTFVMGRNQEMIYKKCSGQ-------- 1091
              +++ F  +      +  + +      D+ G H  V+ +  +   K             
Sbjct: 1061 QKYLNDFSFILENVTSQAAQLKYDPSIGDRLGQHREVISKYMKKALKHVKAHDPKAQDPL 1120

Query: 1092 -----------------LDASNAYIMELPDAL-KDNAEKFADKFLSNEMAKQDFLKLVKH 1133
                               A  +Y+ E  D L +D ++K         + +++   L   
Sbjct: 1121 SSMFNPATSAFATSENFYQAMTSYLKENKDGLVRDKSDKKKHALSRVSLNRKNAEMLFAM 1180

Query: 1134 KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKD 1193
            K++ SL +PGE VG++A QSVGEPSTQMTLNTFHLAG    NVTLGIPRL+EIL  AS  
Sbjct: 1181 KYLRSLVEPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASDK 1240

Query: 1194 IKTPVIT 1200
            I TP ++
Sbjct: 1241 ISTPAMS 1247


>gi|346972060|gb|EGY15512.1| DNA-directed RNA polymerase III subunit RPC1 [Verticillium dahliae
            VdLs.17]
          Length = 1456

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 299/1000 (29%), Positives = 462/1000 (46%), Gaps = 191/1000 (19%)

Query: 281  IFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKV--LQANIYLANAYVNQPDNAKVIV 338
            +F    +  PP+  R      ++  E   T  L+ +  +   I LA   + +    + I+
Sbjct: 261  MFIWQFLPAPPVCIRPSVAQDNASTEDDLTTKLADIVWISGMIRLA---LQKGSPVQTIM 317

Query: 339  ARWMNLQ----QSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSV 394
             +W  LQ      VN    G    G      G CQ L+ K+G FR  L GKRV+++ R+V
Sbjct: 318  EQWEYLQLQIAMYVNSDVPGLQQPGFGKTVRGFCQRLKGKQGRFRGNLSGKRVDFSGRTV 377

Query: 395  ISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM 454
            ISPDP L + ++ IP   A  LTYPERV  +++ KLR  + NG ++ PGA   +      
Sbjct: 378  ISPDPNLGITQVAIPILVAKNLTYPERVNDYSLKKLRKCVQNGPDVWPGAQQVIKSDEG- 436

Query: 455  RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKP 514
                  K+ +  G +   +R   V           G +V RH++D D+VL NRQP+LHK 
Sbjct: 437  ----GYKISLKFGNRRQVARDLKV-----------GDVVERHIEDNDIVLFNRQPSLHKL 481

Query: 515  SIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYV 574
            SIM+H+V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA N++   +   
Sbjct: 482  SIMSHLVKV-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNLA 540

Query: 575  RPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVL 634
             P NG+P+ +  QD I +A LL+ KD F +R  F  ++        G+      P     
Sbjct: 541  TPKNGEPIIAATQDFITAAYLLSGKDRFFDRKTFTYIVMH---MMDGITHLDLPP----- 592

Query: 635  ISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFN 694
                        PAI KP+ LWTGKQV + +L                  P    + + N
Sbjct: 593  ------------PAILKPQALWTGKQVFSMMLR-----------------PNKECQVKIN 623

Query: 695  ADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLI 754
             D +    K                          KPG+          + +  +  L+I
Sbjct: 624  LDAKCREYK-------------------------AKPGQ--------CPDMDPEDAWLVI 650

Query: 755  YKNDLVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
              ++++ G +DK+         + + +   +G + A T ++ L++L    L   GF+ GV
Sbjct: 651  RNSEVMCGRMDKSTVGGGKKDSVFYVILRDFGPDEAVTAMNRLAKLCARQLTNRGFSIGV 710

Query: 812  DD------LLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMR 865
             D      LL+ K K  E  N           + ++ L       I+  K K ++EKA  
Sbjct: 711  GDVFPTEQLLVKKKKLIEDAN-----------IQVDEL-------INTYK-KGKLEKATG 751

Query: 866  GGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQ 925
               +  +      + S++     +  I  L        +  N   +M  SG+KGS++N  
Sbjct: 752  CNMEQTLENSISGLLSKVRTQAGAQCIQTL--------SRNNAPLVMAKSGSKGSEINVA 803

Query: 926  QISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMA 985
            Q+ + +GQQ + G RV      ++LP FH     P + GF+ + F +GL P E+ FH M+
Sbjct: 804  QMVAVVGQQIIGGSRVADGFQDRSLPHFHKNAPQPPSKGFVGNSFYSGLLPTEFIFHAMS 863

Query: 986  GREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD----- 1040
            GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR + G IVQF +G D +D     
Sbjct: 864  GREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRTSGGGIVQFQFGADKLDPVDME 923

Query: 1041 -----VH---------------------QTSFISKFDALAARERGR-------GRG---- 1063
                 VH                         +S  D++ + ER R       G+G    
Sbjct: 924  GSAKPVHFDRTWSHAENLTWSNTDPALLPNEILSFCDSMLSHERSRYPRRDLVGQGYLEY 983

Query: 1064 ---RNKFCD---------KGSHTFVMGRNQEM--IYKKCSGQLDASNAYI-MELPDALKD 1108
                +++ D         +    +V GR  ++  I +      D   A++ ++L D  + 
Sbjct: 984  DNTEDRYTDEHEGARDFLRSVEQYVAGRAAKLTRILQLTGLTSDPLGAHMEIDLIDEEQK 1043

Query: 1109 NAEKFADKFLS-NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFH 1167
              + +AD+    +E   + F+KL   K+  +  +PG  VG + +QS+GEP TQMTL TFH
Sbjct: 1044 AKKAYADRVAKVSENTLKLFIKLCLEKYKKAHVEPGHAVGAVGAQSIGEPGTQMTLKTFH 1103

Query: 1168 LAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
             AG   M++T G+PR++EI+  ASK I TPVI CPL+  K
Sbjct: 1104 FAGVAGMSITQGVPRIKEIIN-ASKLISTPVIKCPLVQNK 1142


>gi|167537656|ref|XP_001750496.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771036|gb|EDQ84710.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1414

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 294/925 (31%), Positives = 442/925 (47%), Gaps = 164/925 (17%)

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ  V + F+G      +D+       G  Q L+ K+G FR  L GKRVNY+ 
Sbjct: 291  IMQTWEALQVHVALYFNGDLPGLPKDLKPKKAPRGFYQRLKGKQGRFRGNLSGKRVNYSG 350

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP  +++E+ +P +    LTYPE V  +N+ +LR ++ NG + +PGA   L+K 
Sbjct: 351  RTVISPDPNASIDEVCVPYHVCKILTYPEMVNDYNIQRLRAAVENGPDNYPGAV-LLEK- 408

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
                            R   T   A     K +    +G +V RHL DGD  L NRQP+L
Sbjct: 409  ---------------SRDKRTYDLAHCNRQKSARELAKGDIVRRHLIDGDYALFNRQPSL 453

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            H+ SIM H V+  +  +T R +   C  YNADFDGDEMN+H PQ E ++AEA  ++   +
Sbjct: 454  HRMSIMCHRVKA-RPWRTFRFNECVCKPYNADFDGDEMNLHVPQTEEAKAEAALLLRTTH 512

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLL--YSSGVSSSGLGSFTGKP 629
                P NG+PL +  QD I    L+++KDTF  + +  Q++  +S G             
Sbjct: 513  NLCTPCNGEPLIAACQDFITGCFLISQKDTFFTKAKVMQMVCAFSDG------------- 559

Query: 630  GQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFF 689
                    S +  LP +PAI KP  +WTGKQV + ++      RP               
Sbjct: 560  --------SLKISLP-VPAIVKPVAMWTGKQVFSMMM------RP--------------- 589

Query: 690  KTRFNADKQSDRKKNDKGKLSKTNKMHK-DKSGKKKEVVEGKPGEEKEAEKNKSKEKELS 748
                         K+D  ++  T K    DK+ +K EV       +K        E+ L 
Sbjct: 590  ------------SKDDPHQVDLTEKNKSFDKNYEKSEV-------KKLGRDLTIGERSLC 630

Query: 749  EEK--LLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
             E   ++I  + L+ G +DKA   +    + + +   Y +  A   +  +++L T +L  
Sbjct: 631  PEDGFVIIRSSRLLCGFLDKANVGESKSTIFYRLLRDYSAQAAVDGMLRMTKLTTRYLME 690

Query: 805  HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAM 864
             GF+ G++D+   ++   E            K V ++    +    I   K    IE   
Sbjct: 691  RGFSIGLEDVTPPQELTDE------------KAVLIKTAFDKCSGYIAEYK-SGRIECQP 737

Query: 865  RGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNF 924
                +  +  F  K  +Q+ +   S      L   +L P   N   +M   G+KGS +N 
Sbjct: 738  GQSAEETLESFIRKDLNQVREEAGS------LCRKVLSPY--NAPKIMAKCGSKGSPINM 789

Query: 925  QQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCM 984
             Q+ + +GQQ L G RVP     + LP F  +   P A GF+ + F TGL P E++FH M
Sbjct: 790  AQMIALVGQQILNGSRVPNGFEDRPLPHFRRFAKVPMAKGFVANSFYTGLTPAEFFFHTM 849

Query: 985  AGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD---- 1040
            +GREGLVDTAVKT+ +GY+QR L+K LE L + YD +VR++ G ++QFCYG+DG+D    
Sbjct: 850  SGREGLVDTAVKTAETGYMQRRLMKALEDLVVHYDTTVRNSSGHMIQFCYGDDGLDPQGM 909

Query: 1041 ----------------------------VHQTSFISKFDALAARERGRGRGRNKFCDKG- 1071
                                        +   + IS F+++   +  R    + +C  G 
Sbjct: 910  ETDDCAVDLEHLFVHVLASDRDGPPPVTLQPAAVISTFESILKEQDLRDYD-HPYCPLGL 968

Query: 1072 ------SHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKF-ADKFLSNEM-- 1122
                   H F+   NQ  ++ +   Q  A     + L  AL+  AE   A + L N +  
Sbjct: 969  DVSADKEHFFL---NQLRVFLEKRAQQLAEIRQRIGLAPALEAPAEDDPAKRHLVNNLMS 1025

Query: 1123 -AKQD---FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTL 1178
              ++D   F++    KF  ++ +PG  VG + +QS+GEP TQMTL TFH AG   MNVTL
Sbjct: 1026 VTREDMRIFVEKALFKFRRTVVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAAMNVTL 1085

Query: 1179 GIPRLQEILTIASKDIKTPVITCPL 1203
            G+PR++EI+  A+K+I TPVIT  L
Sbjct: 1086 GVPRIKEIIN-AAKNISTPVITAKL 1109



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q    C GHFGHI+L +PV++   F    + L+RIC  C     S ++    +R+
Sbjct: 69  CATCSQNLRKCEGHFGHIELELPVFHVGFFKATLSCLQRICKSCSRVMLSHKQATVFLRR 128

Query: 61  LE 62
           L+
Sbjct: 129 LQ 130


>gi|430813364|emb|CCJ29287.1| unnamed protein product [Pneumocystis jirovecii]
          Length = 1074

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/483 (44%), Positives = 305/483 (63%), Gaps = 33/483 (6%)

Query: 748  SEEKLLIYKND-LVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
            ++E+++++K+  L+ GV+DK+QF  + YGLVH++ E+YGS+ AG  L  LSRLFT ++QM
Sbjct: 149  TQEQIILFKDGYLLSGVLDKSQFGASSYGLVHSIYEVYGSSIAGKFLGVLSRLFTKYIQM 208

Query: 805  HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAM 864
             GFTCG+DDL +  D +  RK  ++             + L    ++D I LK+++E+  
Sbjct: 209  RGFTCGIDDLCLNSDGDNCRKELINDKSFCTMEDLKSYIGLSGYDKLDDIILKTKLEQIY 268

Query: 865  RGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNF 924
            R   D  +   D+ M ++++  TSS +I E + +GL      N + +MT S AKG+ VN 
Sbjct: 269  RD--DEKLQGLDVIMKNKMSNLTSS-IIKECIPKGLYIKFPWNNMQMMTVSSAKGNSVNV 325

Query: 925  QQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCM 984
             QIS  LGQQELEG+RVP MVSGK+LPSF P+D +PRA G+I  RFLTG+ PQEYYFHCM
Sbjct: 326  SQISCLLGQQELEGRRVPIMVSGKSLPSFKPYDMSPRASGYIYGRFLTGIGPQEYYFHCM 385

Query: 985  AGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT 1044
            AGREGL+DTAVKTSRSGYLQRCLIK+LE +++ YD +VRD+DGSIVQF YGED +DV + 
Sbjct: 386  AGREGLIDTAVKTSRSGYLQRCLIKHLEGIRVHYDDTVRDSDGSIVQFHYGEDSLDVTKQ 445

Query: 1045 SFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSG----QLD------A 1094
              + +FD      R   R   K+  K  + + +   + ++Y + S     + D      +
Sbjct: 446  KHLLEFDFSVMNCRSLAR---KYRIKTIYKY-LDHKKAVLYARKSIKDPLKYDPVLSKYS 501

Query: 1095 SNAYIMELPDALKDNAEKFADK-------------FLSNEMAKQDFLKLVKHKFVLSLAQ 1141
             + ++  + +  + + E +  K              + N ++K  F  L+  ++  SL  
Sbjct: 502  PSRFLGSISENFQQSIENYISKDPHNFFQKNKNNELIKNNISKDRFRFLMYMRYQQSLVY 561

Query: 1142 PGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITC 1201
            PGE VG+LA QS+GEPSTQMTLNTFH AG G MNVTLG+PRL+EI+  A  +IKTP +T 
Sbjct: 562  PGEAVGVLAGQSIGEPSTQMTLNTFHFAGFGAMNVTLGVPRLREIVLTAGLNIKTPTMTF 621

Query: 1202 PLL 1204
             +L
Sbjct: 622  RIL 624



 Score =  139 bits (350), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/135 (50%), Positives = 89/135 (65%), Gaps = 14/135 (10%)

Query: 532 MHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIV 591
           MHYANC+TYNADFDGDEMN+H PQ+E +R EA  I + ++QY+ P++G PLR LIQDH+V
Sbjct: 1   MHYANCNTYNADFDGDEMNMHLPQNENARTEALLIADTDSQYLVPTSGAPLRGLIQDHVV 60

Query: 592 SAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWK 651
           +   +TKKDTF  ++++ QLLY   +      S  GK             +L LLP I K
Sbjct: 61  TGVWMTKKDTFFTKEQYQQLLYGP-LRPEDNASNGGK-------------ILTLLPTILK 106

Query: 652 PEPLWTGKQVITAVL 666
           P  LWTGKQ+I+ VL
Sbjct: 107 PAVLWTGKQIISTVL 121


>gi|145359470|ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana]
 gi|332009886|gb|AED97269.1| nuclear RNA polymerase C1 [Arabidopsis thaliana]
          Length = 1376

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 295/952 (30%), Positives = 456/952 (47%), Gaps = 154/952 (16%)

Query: 282  FFLGVVLVPPIKFRLPSK--GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
              +  +LVPP+  R PS   GG    E+  T  L +++  N  L +  ++QP ++   + 
Sbjct: 253  LIITCMLVPPLSIR-PSVMIGGIQSNENDLTARLKQIILGNASL-HKILSQPTSSPKNMQ 310

Query: 340  RWMNLQ----QSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
             W  +Q    + +N    G     +    SGI Q L+ K G FR  L GKRV +  R+VI
Sbjct: 311  VWDTVQIEVARYINSEVRGCQNQPEEHPLSGILQRLKGKGGRFRANLSGKRVEFTGRTVI 370

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGA--THYLDKLST 453
            SPDP L + E+GIP   A  LT+PE V+  N+ KLR  + NG   +PGA    Y D  S+
Sbjct: 371  SPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPDG-SS 429

Query: 454  MRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHK 513
              L  + + RI+                   D    G +V RHLQ+GDVVL NRQP+LH+
Sbjct: 430  RTLVGDYRKRIA-------------------DELAIGCIVDRHLQEGDVVLFNRQPSLHR 470

Query: 514  PSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQY 573
             SIM H  R++   +TLR + + C+ YNADFDGDEMN+H PQ E +R EA  ++   N  
Sbjct: 471  MSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNL 529

Query: 574  VRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRV 633
              P NG+ L +  QD + S+ L+T+KDTF +R  F  +    G    G+ S         
Sbjct: 530  CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMG---DGMDSID------- 579

Query: 634  LISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRF 693
                     LP  P I KP  LWTGKQ+ + +L      RP                   
Sbjct: 580  ---------LP-TPTILKPIELWTGKQIFSVLL------RP------------------- 604

Query: 694  NADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLL 753
                            + + +++   + K+K   +G+ G ++    N         +  +
Sbjct: 605  ----------------NASIRVYVTLNVKEKNFKKGEHGFDETMCIN---------DGWV 639

Query: 754  IYKN-DLVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTC 809
             ++N +L+ G + KA   +    GL   +   Y S+ A   ++ L++L   ++ +HGF+ 
Sbjct: 640  YFRNSELISGQLGKATLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSI 699

Query: 810  GVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGD 869
            G+DD+   ++  +ERK+ +    +   + H +  E   G               ++ G D
Sbjct: 700  GIDDVQPGEELSKERKDSIQFGYD---QCHRKIEEFNRG------------NLQLKAGLD 744

Query: 870  AAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS---LMTTSGAKGSKVNFQQ 926
             A +  + ++T  LN       I E   +  +  +G +W +   +M+  G+KGS +N  Q
Sbjct: 745  GAKS-LEAEITGILN------TIREATGKACM--SGLHWRNSPLIMSQCGSKGSPINISQ 795

Query: 927  ISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAG 986
            + + +GQQ + G R P     ++LP F     +P A GF+ + F +GL   E++FH M G
Sbjct: 796  MVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATEFFFHTMGG 855

Query: 987  REGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVH---- 1042
            REGLVDTAVKT+ +GY+ R L+K LE L + YD +VR+A G I+QF YG+DG+D      
Sbjct: 856  REGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGDDGMDPALMEG 915

Query: 1043 QTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMI----YKKCSGQLDASNAY 1098
            +      F+ L  + +     R+      S        +E++     + C+     S   
Sbjct: 916  KDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEEELVRHDKSRVCTDAFVKSLRE 975

Query: 1099 IMEL-------PDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLAS 1151
             + L       P  +   A    DK L      + F+K+   ++     + G  +G + +
Sbjct: 976  FVSLLGVKSASPPQVLYKASGVTDKQL------EVFVKICVFRYREKKIEAGTAIGTIGA 1029

Query: 1152 QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            QS+GEP TQMTL TFH AG   MN+T G+PR+ EI+  ASK+I TPVI+  L
Sbjct: 1030 QSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEIIN-ASKNISTPVISAEL 1080



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC      CPGH+G++ L +PVYN   FN +  +LK IC  C +     +  E  +RK
Sbjct: 75  CTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDEKLYEDHLRK 134

Query: 61  L 61
           +
Sbjct: 135 M 135


>gi|451853513|gb|EMD66807.1| hypothetical protein COCSADRAFT_35290 [Cochliobolus sativus ND90Pr]
          Length = 1781

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 254/737 (34%), Positives = 376/737 (51%), Gaps = 113/737 (15%)

Query: 1   CKTCGQRQFL-CPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVR 59
           C TCG   FL CPGH GHI+L VPVY+    + L  LL+  C +CH  K +R +V + V 
Sbjct: 62  CGTCGLTNFLGCPGHCGHIELPVPVYHLTFIDQLLRLLRGKCAYCHQLKFARVQVNEFVS 121

Query: 60  KLELIIKGDIIAAKSLDLDL-----PSESSNPEDSDVSNKSSCSMVTPRGNY-------- 106
           KL LI  G +  A  +   +      S     +DS+  +     +++ R +Y        
Sbjct: 122 KLRLIRCGLVQEANDMHEHINLEKGKSSKRTADDSEDEDNDHDDIISQRNSYVKKCMKRA 181

Query: 107 ----DNVRNLKPQEWTSLQFAEAKLALLQFLKIETTK---CGNCKAKNPRISKPTFGWIH 159
                + R+++ +       ++A+  +++    E  K   CGNC+  +P   K     I 
Sbjct: 182 GISKHDARSVREKNEA---ISDARRQVVKEFYAELVKRRTCGNCQGISPTYRKDRGIKIF 238

Query: 160 MNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARR 219
              +   D          + +     +   D+ A  D  A + H          D A+  
Sbjct: 239 RKALSQKD-------KTKMAQAEKRIQNPLDILARRDAKAKKQHVHADEGVADLDPASEE 291

Query: 220 ---------HQKGSGAVPSGFKKQKDLFSGPLL--------PSDVKDIIEKLWENEFELC 262
                     Q     V +  +  +   +   L         ++VK  +  L+E+E E+ 
Sbjct: 292 DEDIDMEDIQQTDGSLVATEARMARKAKTDDTLEAAQEYVNSTEVKAAMTLLFESESEMM 351

Query: 263 SFISDMQQQGFGKKA----GHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQ 318
             +       +G K+       +FF   ++VPP KFR   K GDS+ E  +  L   +L+
Sbjct: 352 RLL----YSPYGSKSLVDVSADMFFTQAIIVPPNKFRPEDKTGDSIAESSKNKLYKGILE 407

Query: 319 A--NI-YLANAYVNQPD-------NAKVIVARWMNLQQSVNVLFD-------GKNAAGQR 361
           A  +I  ++     +P+       N   +  +++NLQ +VN L D       G+ A    
Sbjct: 408 ACESIRQISQEMQGKPNELGFRQRNFDDMQTQFVNLQGAVNALIDRDANPVQGRGAVTNA 467

Query: 362 DMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPER 421
           D   GI Q LEKKEGLFR+ +MGKRVN+A RSVISPDP +  NEIG+PP FA++LTYPE 
Sbjct: 468 D---GIKQGLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFAVKLTYPEP 524

Query: 422 VTPWNVVKLRDSIINGAEIHPGATHYLD----KLSTMRLPPNKKMRISIGRKLDTSRGAI 477
           VT  N   L+++++NG +  PGA H ++    ++ +++   N + R+++  +L       
Sbjct: 525 VTNHNFYDLKEAVLNGPDKWPGA-HAIENEFGQIISLK-KKNYEERLALANQL------- 575

Query: 478 VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 537
           + P     N  + K V+RHL +GDVV++NRQPTLHKPS+MAH  RVL GEKT+RMHYANC
Sbjct: 576 LAPSNSYSNGAKNKKVHRHLNNGDVVIMNRQPTLHKPSMMAHRARVLPGEKTIRMHYANC 635

Query: 538 STYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
           +TYNADFDGDEMN+HFPQ+E++RAEA  I + ++QY+  + G PLR LIQDHI     L+
Sbjct: 636 NTYNADFDGDEMNMHFPQNELARAEAMTIADTDHQYLSATAGKPLRGLIQDHISMGVWLS 695

Query: 598 KKDTFLNRDEFCQLLYS-----SGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKP 652
            KDTF  RD++ QLLYS      G ++SG                    +  + PAI KP
Sbjct: 696 NKDTFFTRDQYHQLLYSCLRPEDGHTTSG-------------------RLETVAPAILKP 736

Query: 653 EPLWTGKQVITAVLNHI 669
            P+WTGKQ+IT VL +I
Sbjct: 737 RPMWTGKQIITTVLKNI 753



 Score =  354 bits (909), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 206/477 (43%), Positives = 283/477 (59%), Gaps = 31/477 (6%)

Query: 748  SEEKLLIYKND-LVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
            SEE+ +I K+  L+ G++DK Q   A  GL++ + E YG   AG  LS + RL T  L M
Sbjct: 778  SEEQFVIVKDGALLTGIMDKGQIGPAAGGLINGIYEAYGETIAGRALSIIGRLLTKMLHM 837

Query: 805  HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI--KLKSEIEK 862
              F+CGV+DL++    E  R   L  +E+IG  V  + + L +  +IDP   +L+  +E 
Sbjct: 838  RAFSCGVEDLILTGQGEEARLVELRKAEKIGFEVASKYVTL-NAEKIDPTNPELRRRLEA 896

Query: 863  AMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV 922
             +R   D      D+ +T+  N   SS+V   +L + L+K   KN +  MT SGAKGS V
Sbjct: 897  VLRD--DTKQHGLDL-LTNTANSKISSAVTAAVLPDKLIKAFPKNQMQAMTGSGAKGSMV 953

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  QIS +LGQQ LEG+RVP M+SGKTLP F P++ + RAGG+I++RFLTG+RPQEYYFH
Sbjct: 954  NANQISCNLGQQVLEGRRVPVMISGKTLPCFKPFETSVRAGGYIVNRFLTGVRPQEYYFH 1013

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVH 1042
             MAGREGL+DTAVKTSRSGYLQRC+IK +E L++ YD SVRD+DGS+VQF YGEDG+D  
Sbjct: 1014 MMAGREGLIDTAVKTSRSGYLQRCIIKGMEGLRVEYDTSVRDSDGSMVQFLYGEDGLDTT 1073

Query: 1043 QTSFISKFDALA--------ARERGRGRGRNKFCDKGSHTFVMGRNQE-----------M 1083
            +  +++ F   A        A        R    +   H     +  +            
Sbjct: 1074 KQKYLNDFKFQAQNFYSLAQALHTAEAYPRVSSAEAAEHNKKATKKAKKGDIAAMDPVTA 1133

Query: 1084 IYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNE---MAKQDFLKLVKHKFVLSLA 1140
            +Y         S  ++    +    N +K       +E   + K+ F +++  K++ SL 
Sbjct: 1134 VYTPSRHSGSTSETFLQAKREYCDKNPDKLLKNKKKDEEGEILKRTFEQMLDLKYLRSLV 1193

Query: 1141 QPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTP 1197
            +PGE VG++A QS+GEPSTQMTLNTFHLAG    NVTLGIPRL+EI+  AS +I TP
Sbjct: 1194 EPGEAVGVVAGQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASANISTP 1250


>gi|444720682|gb|ELW61459.1| DNA-directed RNA polymerase III subunit RPC1 [Tupaia chinensis]
          Length = 1368

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 297/965 (30%), Positives = 448/965 (46%), Gaps = 186/965 (19%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E                V   N+  LR  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDE----------------VNKANINFLRKLVRNGPEVHPGANFIQQRH 409

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
              M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 410  MQMKRFLKYGNREKMAQELKY-----------------GDIVERHLIDGDVVLFNRQPSL 452

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 453  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 511

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 512  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 554

Query: 632  RVLISRSEQ-EVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+ +V    P I KP  LWTGKQ+ + +L                  P D   
Sbjct: 555  -ILVGKDEKIKVCLPPPTILKPVTLWTGKQIFSVILR-----------------PSDDNP 596

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK +++                    +++ 
Sbjct: 597  VRANLRTKG-----------------KQYCGKGEDLC-------------------VNDS 620

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   GF
Sbjct: 621  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 680

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 681  SIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQQ 723

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 724  PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 775

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 776  ISQMIACVGQQAISGSRVPDGFENRSLPHFDKHSKLPAAKGFVANSFYSGLTPTEFFFHT 835

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 836  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD--P 893

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ-----EMIYKKCSGQLDASNAY 1098
             +   K + L  +         +  D       + +N+     E I KK +  L   +++
Sbjct: 894  AAMEGKDEPLEFK---------RVLDNIKSEPALSKNELVVTTESIMKK-NEFLCCQDSF 943

Query: 1099 IMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVLS 1138
            + E+   +K  +EK     DK+  N+    +                 FL+  + K++ +
Sbjct: 944  LQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMRA 1003

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+
Sbjct: 1004 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPI 1062

Query: 1199 ITCPL 1203
            IT  L
Sbjct: 1063 ITAQL 1067



 Score = 47.8 bits (112), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFKAVIGILQMICKTCCHIMLSQEE 121


>gi|19074431|ref|NP_585937.1| DNA-DIRECTED RNA POLYMERASE III 160 kDa SUBUNIT (LARGEST SUBUNIT)
            [Encephalitozoon cuniculi GB-M1]
          Length = 1349

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 315/1021 (30%), Positives = 484/1021 (47%), Gaps = 193/1021 (18%)

Query: 219  RHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAG 278
            R  KGS  V S   ++ +    PL+  +V ++++   E+++EL  F+             
Sbjct: 218  RGSKGSDGVHSSCCEEIN----PLVALNVFNMMK---EDDYELLGFLE-----------S 259

Query: 279  HSIFFLGVVLVPPIKFRLPSKGGDS--VMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
             S   +  V+VPP   R PS   D     E   T+ +S+++  N  L    + + +   +
Sbjct: 260  PSRLIIQNVIVPPSCIR-PSVSMDDEGTNEDDITIKISEIVHTNKVLREG-IEKGNPLNL 317

Query: 337  IVARWMNLQQSVNVLFDGK----NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACR 392
            I   W +LQ    +L + +       GQ     GI Q L+ K G FR  L GKRV+++ R
Sbjct: 318  INEDWDHLQLQCALLINSELPQIGIPGQP--VRGIVQRLKGKNGRFRCNLSGKRVDFSGR 375

Query: 393  SVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLS 452
            +VISPDP L++ E+GIP   A  LT  ERVT  N  KL+  ++NG E +PGA +      
Sbjct: 376  TVISPDPNLSIEEVGIPERMAKILTISERVTRLNRRKLQALVLNGPENYPGANYV----- 430

Query: 453  TMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLH 512
                         +G K        +  GK       G++V RHL DGD+VL NRQP+LH
Sbjct: 431  -------------VGEKFKR----FLMYGKRDIELKYGEVVERHLMDGDMVLFNRQPSLH 473

Query: 513  KPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQ 572
            + SIM+H VRV +  KTLR +   C+ YNADFDGDEMNVH PQ E +RAEA  +++ +N 
Sbjct: 474  RMSIMSHKVRVHRN-KTLRFNECVCTPYNADFDGDEMNVHVPQTEKARAEASVLMSVSNN 532

Query: 573  YVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQR 632
             V P +G+P+ +  QD I    L+T KDTF +R+ F QL+  S  S + +G         
Sbjct: 533  IVTPRHGEPIVAATQDFITGLYLITGKDTFFDRERFGQLV--SYFSEARVG--------- 581

Query: 633  VLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 692
                        + PAI KP  L+TGKQ+I  ++                       K  
Sbjct: 582  ------------VKPAIRKPVELFTGKQLIEVLI-----------------------KDS 606

Query: 693  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL 752
            F A  + +         + T  M     GK +                     + ++  +
Sbjct: 607  FTASIERN---------AVTGNMAVSLVGKNRSF---------------KTHDDPNDGSV 642

Query: 753  LIYKNDLVRGVIDKAQFADY----GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFT 808
             I  N    G +DK+          L++ + ++  S  A   ++++++L + +L   GF+
Sbjct: 643  AILDNSYYFGRLDKSIVGGENKRDSLIYAIMKV-SSMAAVRAMNSITKLCSRYLGETGFS 701

Query: 809  CGVDDLL---ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMR 865
             G+DD+    IL+ K+          E + +R + E       ++I     K E  + M 
Sbjct: 702  IGLDDVQPGPILRQKK----------EMVVRRGYAEC-----ESKILEYSKKPEANEEM- 745

Query: 866  GGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTG-KNWISLMTTSGAKGSKVNF 924
                      +M+++S LN+      I E      +K  G +N  ++M   G+KGSK+N 
Sbjct: 746  ---------LEMEISSILNR------IREECGSICIKELGIRNSPNIMQACGSKGSKINV 790

Query: 925  QQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCM 984
             Q+ + +GQQ + G R+P  +  + LP F      P + GF+++ F  GL   E++FH +
Sbjct: 791  SQMVACVGQQIVSGTRIPNGMDERCLPHFKRGSRTPESKGFVLNSFFDGLTSPEFFFHAV 850

Query: 985  AGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT 1044
            +GREGLVDTAVKT+ +GY+QR L+K LE L I YD SVR+++  +VQF YGED +D    
Sbjct: 851  SGREGLVDTAVKTAETGYMQRRLMKALEDLSIQYDGSVRNSNMEVVQFAYGEDQID---- 906

Query: 1045 SFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLD----------- 1093
              +S+ D     E+   R ++ F     H+     +    +    G +D           
Sbjct: 907  PAMSEGDESINLEQVFLRAKSSFL----HSLGPSPDLYSSWLDEHGTIDILRRLTPKGYP 962

Query: 1094 ----ASNAYIMELPDALKDNAE-------KFADKFLSNEMAKQDFLKLVKHKFVLSLAQP 1142
                A+  ++  L   ++   E        F   FLS +   + F  +V  K +  + +P
Sbjct: 963  FEHIANRRFVGSLLRFMESKHEDKFCFGGTFYRYFLSKDFI-ETFFSMVSQKMMNLIVEP 1021

Query: 1143 GEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCP 1202
            G  VG +A QS+GEP TQMTL TFH AG   MN+TLG+PRL+EI+  A  +I TP+I   
Sbjct: 1022 GTTVGAIAGQSIGEPGTQMTLKTFHFAGVASMNITLGVPRLKEIIN-AVCNISTPIINAE 1080

Query: 1203 L 1203
            L
Sbjct: 1081 L 1081



 Score = 41.6 bits (96), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TCG+    C GHFG + LV+PV+N  L     + L  +C  C
Sbjct: 100 CATCGEGLATCIGHFGEVRLVLPVFNVGLIKNTISTLNCLCKSC 143


>gi|386875147|ref|ZP_10117336.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosopumilus
            salaria BD31]
 gi|386807026|gb|EIJ66456.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosopumilus
            salaria BD31]
          Length = 1263

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 297/989 (30%), Positives = 465/989 (47%), Gaps = 176/989 (17%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P+ F ++ ++    LLP  +++   ++ + + E+ S+          + A    F L  +
Sbjct: 164  PTIFVEKTEIGEHRLLPITIRERFSQILDEDLEILSYDP--------RTARPEWFILQAL 215

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
             VPP+  R PS   ++ +  E   T  +  +++ N  L  +   +     +IV   ++L 
Sbjct: 216  PVPPVTVR-PSIILETGIRSEDDLTHKMVDIIRVNQRLKES--KEAGTPPLIVQDLVDLL 272

Query: 346  QSVNVLFDGKNAAG--QRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
            Q  +  +     +G  Q    SG     + Q L+ KEG FR  L GKRV+++ R+VISPD
Sbjct: 273  QYHSTTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPD 332

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP 458
            P L ++E+G+P   A++LT PE VT WN+ ++R  +ING E  PG  + +        P 
Sbjct: 333  PNLDLSEVGVPEQVAMKLTIPEIVTEWNIERMRKLVINGPEKFPGVNYIVR-------PD 385

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
              K+R+         R  I +  +       G ++ RHL DGD+V+ NRQP+LH+ SIMA
Sbjct: 386  GVKIRLDFVE----DRSIIAESLEI------GYLIERHLADGDIVMFNRQPSLHQMSIMA 435

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H VRVL G KT R+H + C  YNADFDGDEMN+H PQ E +RAEA  ++   +Q + P  
Sbjct: 436  HYVRVLPG-KTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAILLMRVQDQLISPRY 494

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            G P+   ++D +  A LLTK  T L+  EF  L        + LG +             
Sbjct: 495  GGPIIGALRDFVTGAYLLTKDGTTLSIQEFSNL--------AMLGGY------------- 533

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
             ++ LP      K  P +TGKQ+ +                    LP+DF          
Sbjct: 534  -KDALPKPATKTKDGPAYTGKQLFSLF------------------LPKDF---------- 564

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND 758
                         T+K  K  +G  K+VV                          I   +
Sbjct: 565  ---------NYVLTSKWSKGTNGPPKDVV--------------------------IKNGE 589

Query: 759  LVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
            L+ GVIDK          ++H + + YG+      L+++  +   F+  +GF+ G  DL 
Sbjct: 590  LISGVIDKTSIGAEEPESVLHRITKDYGNAIGKNFLNSILIMVKQFITSYGFSYGFGDLE 649

Query: 816  ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYF 875
            + + ++++  + + G+ ++         +L D  +   +KL     + M+   +A  AY 
Sbjct: 650  VPEKEKQQILDDIQGTYDV-------ISDLTDQYDKGTLKLT----RGMK-AEEALEAYI 697

Query: 876  DMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQE 935
              ++    +K  + S  N+ L          N   +M T+GA+GS +N  Q++  LGQQ 
Sbjct: 698  VNELGKARDK--AGSTANDSLD-------NSNAGKIMATTGARGSSLNVGQMAGALGQQS 748

Query: 936  LEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAV 995
              G R+      + L  F   D  P A GF+   +  GL   E++FH M GREGLVDTAV
Sbjct: 749  RRGNRLHDGYQNRALTHFQEHDSNPDAHGFVKSNYREGLSALEFFFHAMGGREGLVDTAV 808

Query: 996  KTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDA--L 1053
            +T +SGY+QR LI  LE +++ YD +VRD  G IVQF YGEDG+DV ++     F+   L
Sbjct: 809  RTQQSGYMQRRLINALEHIRLEYDGTVRDPHGHIVQFLYGEDGIDVQKSDHGEAFNPSRL 868

Query: 1054 AARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKF 1113
            A  +     G+    D+           E++ KK +      N  +  L           
Sbjct: 869  AESQTITDSGKKATKDE----------IEVLAKKYTKTF---NPRLTSL----------V 905

Query: 1114 ADKFLSNEMAKQDFLKLVKHKFVL---SLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
             +  L++ ++K     + K    L   +  +PG+ VG++ +QS+GEP TQMTL TFH AG
Sbjct: 906  TEALLNSNLSKDGVEAVCKKGLSLYNKAKVEPGQAVGIITAQSIGEPGTQMTLRTFHFAG 965

Query: 1171 RGEMNVTLGIPRLQEILTIASKDIKTPVI 1199
              E NVTLG+PRL E++    K + TP +
Sbjct: 966  IKERNVTLGLPRLIELVDARKKPV-TPTM 993



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVE 55
           C TCG     CPGHFGHI+L  P+ +    + +Y LL+  C  C   K  + +++
Sbjct: 61  CLTCGNTAARCPGHFGHIELAEPILHIAFIDNIYKLLQSTCRSCARLKVPQEDLD 115


>gi|302409260|ref|XP_003002464.1| DNA-directed RNA polymerase III subunit RPC1 [Verticillium albo-atrum
            VaMs.102]
 gi|261358497|gb|EEY20925.1| DNA-directed RNA polymerase III subunit RPC1 [Verticillium albo-atrum
            VaMs.102]
          Length = 1456

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 299/1000 (29%), Positives = 462/1000 (46%), Gaps = 191/1000 (19%)

Query: 281  IFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKV--LQANIYLANAYVNQPDNAKVIV 338
            +F    +  PP+  R      ++  E   T  L+ +  +   I LA   + +    + I+
Sbjct: 261  MFIWQFLPAPPVCIRPSVAQDNASTEDDLTTKLADIVWISGMIRLA---LQKGSPVQTIM 317

Query: 339  ARWMNLQ----QSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSV 394
             +W  LQ      VN    G    G      G CQ L+ K+G FR  L GKRV+++ R+V
Sbjct: 318  EQWEYLQLQIAMYVNSDVPGLQQPGFGKTVRGFCQRLKGKQGRFRGNLSGKRVDFSGRTV 377

Query: 395  ISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM 454
            ISPDP L + ++ IP   A  LTYPERV  +++ KLR  + NG ++ PGA   +      
Sbjct: 378  ISPDPNLGITQVAIPILVAKNLTYPERVNDYSLKKLRKCVQNGPDVWPGAQQVIKSDEG- 436

Query: 455  RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKP 514
                  K+ +  G +   +R   V           G +V RH++D D+VL NRQP+LHK 
Sbjct: 437  ----GYKISLKFGNRGQVARDLKV-----------GDVVERHIEDNDIVLFNRQPSLHKL 481

Query: 515  SIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYV 574
            SIM+H+V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA N++   +   
Sbjct: 482  SIMSHLVKV-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNLA 540

Query: 575  RPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVL 634
             P NG+P+ +  QD I +A LL+ KD F +R  F  ++        G+      P     
Sbjct: 541  TPKNGEPIIAATQDFITAAYLLSGKDRFFDRKTFTYIVMH---MMDGITHLDLPP----- 592

Query: 635  ISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFN 694
                        PAI KP+ LWTGKQV + +L                  P    + + N
Sbjct: 593  ------------PAILKPQALWTGKQVFSMMLR-----------------PNKECQVKIN 623

Query: 695  ADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLI 754
             D +    K                          KPG+          + +  +  L+I
Sbjct: 624  LDAKCREYK-------------------------AKPGQ--------CPDMDPEDAWLVI 650

Query: 755  YKNDLVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
              ++++ G +DK+         + + +   +G + A T ++ L++L    L   GF+ GV
Sbjct: 651  RNSEVMCGRMDKSTVGGGKKDSVFYVILRDFGPDEAVTAMNRLAKLCARQLTNRGFSIGV 710

Query: 812  DD------LLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMR 865
             D      LL+ K K  E  N           + ++ L       I+  K K ++EKA  
Sbjct: 711  GDVFPTEQLLVKKKKLIEDAN-----------IQVDEL-------INTYK-KGKLEKATG 751

Query: 866  GGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQ 925
               +  +      + S++     +  I  L        +  N   +M  SG+KGS++N  
Sbjct: 752  CNMEQTLENSISGLLSKVRTQAGAQCIQTL--------SRNNAPLVMAKSGSKGSEINVA 803

Query: 926  QISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMA 985
            Q+ + +GQQ + G RV      ++LP FH     P + GF+ + F +GL P E+ FH M+
Sbjct: 804  QMVAVVGQQIIGGSRVADGFQDRSLPHFHKNAPQPPSKGFVGNSFYSGLLPTEFIFHAMS 863

Query: 986  GREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD----- 1040
            GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR + G IVQF +G D +D     
Sbjct: 864  GREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRTSGGGIVQFQFGADKLDPVDME 923

Query: 1041 -----VH---------------------QTSFISKFDALAARERGR-------GRG---- 1063
                 VH                         +S  D++ + ER R       G+G    
Sbjct: 924  GSAKPVHFDRTWSHAENLTWSNTDPALLPNEILSFCDSMLSHERSRYPRRDLVGQGYLEY 983

Query: 1064 ---RNKFCD---------KGSHTFVMGRNQEM--IYKKCSGQLDASNAYI-MELPDALKD 1108
                +++ D         +    +V GR  ++  I +      D   A++ ++L D  + 
Sbjct: 984  DNTEDRYTDEHEGARDFLRSVEQYVAGRAAKLTRILQLTGLTSDPLGAHMEIDLIDEEQK 1043

Query: 1109 NAEKFADKFLS-NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFH 1167
              + +AD+    +E   + F+KL   K+  +  +PG  VG + +QS+GEP TQMTL TFH
Sbjct: 1044 AKKAYADRVAKVSENTLKLFIKLCLEKYKKAHVEPGHAVGAVGAQSIGEPGTQMTLKTFH 1103

Query: 1168 LAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
             AG   M++T G+PR++EI+  ASK I TPVI CPL+  K
Sbjct: 1104 FAGVAGMSITQGVPRIKEIIN-ASKLISTPVIKCPLVQNK 1142


>gi|392512733|emb|CAD25541.2| DNA-DIRECTED RNA POLYMERASE III 160 kDa SUBUNIT (LARGEST SUBUNIT)
            [Encephalitozoon cuniculi GB-M1]
          Length = 1316

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 315/1021 (30%), Positives = 484/1021 (47%), Gaps = 193/1021 (18%)

Query: 219  RHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAG 278
            R  KGS  V S   ++ +    PL+  +V ++++   E+++EL  F+             
Sbjct: 185  RGSKGSDGVHSSCCEEIN----PLVALNVFNMMK---EDDYELLGFLE-----------S 226

Query: 279  HSIFFLGVVLVPPIKFRLPSKGGDS--VMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
             S   +  V+VPP   R PS   D     E   T+ +S+++  N  L    + + +   +
Sbjct: 227  PSRLIIQNVIVPPSCIR-PSVSMDDEGTNEDDITIKISEIVHTNKVLREG-IEKGNPLNL 284

Query: 337  IVARWMNLQQSVNVLFDGK----NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACR 392
            I   W +LQ    +L + +       GQ     GI Q L+ K G FR  L GKRV+++ R
Sbjct: 285  INEDWDHLQLQCALLINSELPQIGIPGQP--VRGIVQRLKGKNGRFRCNLSGKRVDFSGR 342

Query: 393  SVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLS 452
            +VISPDP L++ E+GIP   A  LT  ERVT  N  KL+  ++NG E +PGA +      
Sbjct: 343  TVISPDPNLSIEEVGIPERMAKILTISERVTRLNRRKLQALVLNGPENYPGANYV----- 397

Query: 453  TMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLH 512
                         +G K        +  GK       G++V RHL DGD+VL NRQP+LH
Sbjct: 398  -------------VGEKFKR----FLMYGKRDIELKYGEVVERHLMDGDMVLFNRQPSLH 440

Query: 513  KPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQ 572
            + SIM+H VRV +  KTLR +   C+ YNADFDGDEMNVH PQ E +RAEA  +++ +N 
Sbjct: 441  RMSIMSHKVRVHRN-KTLRFNECVCTPYNADFDGDEMNVHVPQTEKARAEASVLMSVSNN 499

Query: 573  YVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQR 632
             V P +G+P+ +  QD I    L+T KDTF +R+ F QL+  S  S + +G         
Sbjct: 500  IVTPRHGEPIVAATQDFITGLYLITGKDTFFDRERFGQLV--SYFSEARVG--------- 548

Query: 633  VLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 692
                        + PAI KP  L+TGKQ+I  ++                       K  
Sbjct: 549  ------------VKPAIRKPVELFTGKQLIEVLI-----------------------KDS 573

Query: 693  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL 752
            F A  + +         + T  M     GK +                     + ++  +
Sbjct: 574  FTASIERN---------AVTGNMAVSLVGKNRSF---------------KTHDDPNDGSV 609

Query: 753  LIYKNDLVRGVIDKAQFADY----GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFT 808
             I  N    G +DK+          L++ + ++  S  A   ++++++L + +L   GF+
Sbjct: 610  AILDNSYYFGRLDKSIVGGENKRDSLIYAIMKV-SSMAAVRAMNSITKLCSRYLGETGFS 668

Query: 809  CGVDDLL---ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMR 865
             G+DD+    IL+ K+          E + +R + E       ++I     K E  + M 
Sbjct: 669  IGLDDVQPGPILRQKK----------EMVVRRGYAEC-----ESKILEYSKKPEANEEM- 712

Query: 866  GGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTG-KNWISLMTTSGAKGSKVNF 924
                      +M+++S LN+      I E      +K  G +N  ++M   G+KGSK+N 
Sbjct: 713  ---------LEMEISSILNR------IREECGSICIKELGIRNSPNIMQACGSKGSKINV 757

Query: 925  QQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCM 984
             Q+ + +GQQ + G R+P  +  + LP F      P + GF+++ F  GL   E++FH +
Sbjct: 758  SQMVACVGQQIVSGTRIPNGMDERCLPHFKRGSRTPESKGFVLNSFFDGLTSPEFFFHAV 817

Query: 985  AGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT 1044
            +GREGLVDTAVKT+ +GY+QR L+K LE L I YD SVR+++  +VQF YGED +D    
Sbjct: 818  SGREGLVDTAVKTAETGYMQRRLMKALEDLSIQYDGSVRNSNMEVVQFAYGEDQID---- 873

Query: 1045 SFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLD----------- 1093
              +S+ D     E+   R ++ F     H+     +    +    G +D           
Sbjct: 874  PAMSEGDESINLEQVFLRAKSSFL----HSLGPSPDLYSSWLDEHGTIDILRRLTPKGYP 929

Query: 1094 ----ASNAYIMELPDALKDNAE-------KFADKFLSNEMAKQDFLKLVKHKFVLSLAQP 1142
                A+  ++  L   ++   E        F   FLS +   + F  +V  K +  + +P
Sbjct: 930  FEHIANRRFVGSLLRFMESKHEDKFCFGGTFYRYFLSKDFI-ETFFSMVSQKMMNLIVEP 988

Query: 1143 GEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCP 1202
            G  VG +A QS+GEP TQMTL TFH AG   MN+TLG+PRL+EI+  A  +I TP+I   
Sbjct: 989  GTTVGAIAGQSIGEPGTQMTLKTFHFAGVASMNITLGVPRLKEIIN-AVCNISTPIINAE 1047

Query: 1203 L 1203
            L
Sbjct: 1048 L 1048



 Score = 42.0 bits (97), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TCG+    C GHFG + LV+PV+N  L     + L  +C  C
Sbjct: 67  CATCGEGLATCIGHFGEVRLVLPVFNVGLIKNTISTLNCLCKSC 110


>gi|327242145|gb|AEA40851.1| RNA polymerase I largest subunit [Trichomonas tenax]
          Length = 553

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/528 (40%), Positives = 317/528 (60%), Gaps = 75/528 (14%)

Query: 528  KTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQ 587
            +T+RMHY+NC+++NADFDGDE+N+H PQ+E++RAEA  +  ++  Y+ P+ G+P+R LIQ
Sbjct: 1    RTIRMHYSNCASFNADFDGDEINLHLPQNEIARAEANILSLSSRHYITPTAGNPIRGLIQ 60

Query: 588  DHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLP 647
            DH+ + ALLT K+ FL R ++ +L++++         F G+        +++ E+LP  P
Sbjct: 61   DHVDAGALLTMKNNFLTRQQYQELVFTA---------FGGEI-------KTKLEMLP--P 102

Query: 648  AIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKG 707
            AI KP  LWTGKQVI+ ++ ++T+G                     +AD+  +   N   
Sbjct: 103  AIIKPVELWTGKQVISTIIVNLTKG---------------------HADQMMELTSN--- 138

Query: 708  KLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKA 767
              SK + +    S K++ VV    G+                         LV G+IDK+
Sbjct: 139  --SKISSILCYGS-KEETVVRFVDGQ-------------------------LVTGIIDKS 170

Query: 768  QF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERK 825
            QF  + +G+VHT+ ELYGS+ A   L+ L+RLFT F+Q HGF+CG+ D+++    +  R+
Sbjct: 171  QFGASKFGMVHTIYELYGSDIASRFLTMLTRLFTYFMQCHGFSCGIADMIVNHKGDGLRE 230

Query: 826  NHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNK 885
                 ++++  +   + +E     E   + LK  +   ++   D    Y  M M   +NK
Sbjct: 231  QMKVETQKVALKAAKDFVEEFGSKETQYLPLKERLWDLIKDK-DMKERYDHMIM-GLINK 288

Query: 886  HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMV 945
             T+S  +N +    + KP  +N +++M +SGAKGS VN  QIS  L QQ LEGKRVP M 
Sbjct: 289  -TASDTLNSIFPTNISKPFPQNHLTMMASSGAKGSVVNATQISCLLAQQSLEGKRVPIMR 347

Query: 946  SGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQR 1005
            SGKTLPSF   D +P++GGF+  RFLTGL P+EYYFH M GREGL DTAVKT+ +GYLQR
Sbjct: 348  SGKTLPSFDFMDLSPQSGGFVSSRFLTGLTPEEYYFHAMGGREGLTDTAVKTANTGYLQR 407

Query: 1006 CLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDAL 1053
            C+IKN+E L+ SYD +VR+AD +I+QF YGEDG+D  Q  +I+KFD +
Sbjct: 408  CIIKNIEGLRASYDGTVREADDTIIQFLYGEDGIDPMQNKYITKFDFM 455


>gi|357148941|ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Brachypodium distachyon]
          Length = 1392

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 297/964 (30%), Positives = 444/964 (46%), Gaps = 155/964 (16%)

Query: 287  VLVPPIKFRLPS---KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMN 343
            + VPP+  R PS    GG    E   T +L  ++  N  L     N     K     W  
Sbjct: 249  IAVPPVPIR-PSVFVGGGRMSNEDGITCILRNIVNTNSILKGILQNGDPLMKCFDC-WQL 306

Query: 344  LQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
            LQ  V    +    +       G+ Q L+ K G FR  L GKR  Y  R+VISPDP L +
Sbjct: 307  LQLQVVEYINSDAPSLTDPQNRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVISPDPNLRI 366

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMR 463
             E+ IP   A  LTYPERV+ +N+ KLR  I NG   HPGA            P   K+ 
Sbjct: 367  TEVAIPVLMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFVTQ-------PDGTKLH 419

Query: 464  ISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRV 523
            +    +   +R          D ++ G +V RHL+DGD+VL NRQP+LH+ SIM+H  R+
Sbjct: 420  LKYCDRRIAAR----------DLKY-GCIVERHLEDGDIVLFNRQPSLHRMSIMSHRARI 468

Query: 524  LKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLR 583
            +   +TLR + + C+ YNADFDGDEMN+H PQ E +R EA  ++   N    P NG+ L 
Sbjct: 469  MPW-RTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILV 527

Query: 584  SLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVL 643
            +  QD + S+ L+T+KD F +R  F  L            S+ G   + +         L
Sbjct: 528  ASTQDFLTSSFLITRKDNFYDRSYFTLLC-----------SYLGDAMENI--------DL 568

Query: 644  PLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKK 703
            P  PAI KP  LWTGKQ+ +             V+ R     + +            R++
Sbjct: 569  P-TPAIIKPLELWTGKQLFS-------------VLVRPNACTKVYLNLTVEEKIYMKRRE 614

Query: 704  NDKGKLSKTNKMHKDKSG----KKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDL 759
             DK  +S   +      G    +  E++ G+ G++     NK                  
Sbjct: 615  RDKNAVSVLEETMCPNDGYVYFRNSELLSGQVGKKTLGNGNKD----------------- 657

Query: 760  VRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKD 819
                         G+   +   Y S+ A + ++ L++    F+  HGF+ GVDD+   + 
Sbjct: 658  -------------GMFSVLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGES 704

Query: 820  KERERKNHL-HGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMK 878
              +++K  +  G  E    + + + +   GAE+ P              G       +++
Sbjct: 705  LNQKKKKTIDQGYTECHDLIAVYS-KGAPGAELHP--------------GCNRAQTLEVR 749

Query: 879  MTSQLNKHTSSSVINELLSEGLLKPTG-KNWISLMTTSGAKGSKVNFQQISSHLGQQELE 937
            +++ LN+      + E   E  +     +N   +M+  G+KGS +N  Q+   +GQQ + 
Sbjct: 750  VSAILNQ------LREKAGEHCMNTLHWRNSPLIMSQCGSKGSPINISQMVVCVGQQSVG 803

Query: 938  GKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKT 997
            G+R P     +TLP F      P A GF+ + F TGL   E++FH M GREGLVDTAVKT
Sbjct: 804  GRRAPDGFIDRTLPHFPIHSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKT 863

Query: 998  SRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD-----------VHQTSF 1046
            + +GY+ R L+K LE L + YD +VR+A   IVQF YG+DG+D           ++    
Sbjct: 864  AETGYMSRRLMKGLEDLSVFYDQTVRNASSGIVQFVYGDDGMDPVKMEGKGGSPLNLDQL 923

Query: 1047 ISKFDALAARERGRGRGRNKFCDKGSHTFVMGR--NQEMIYKKCSGQLDA---------- 1094
              K  A   +     RG +    +     +  +   Q+M    CS +             
Sbjct: 924  FMKVKATCPQ-----RGHDMLSPEAIMQMLNDKLSEQDMSSGGCSDKFKELLTKFFEDRI 978

Query: 1095 ----SNAYIMELPD---ALKDNA--EKFADKFLSNEMAK--QDFLKLVKHKFVLSLAQPG 1143
                S    + L +    +KD++  E+ A   +S   AK  Q FL     ++   + + G
Sbjct: 979  KMLRSTRRTLHLDEDHVGMKDSSIEERIAAN-ISGISAKQLQVFLDTCLSRYHSKIIEAG 1037

Query: 1144 EPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
              +G + +QS+GEP TQMTL TFH AG   MNVTLG+PR++EI+  A+K+I TP+IT  L
Sbjct: 1038 ASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-AAKNISTPIITAEL 1096

Query: 1204 LVGK 1207
            L G+
Sbjct: 1097 LSGQ 1100



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC      CPGHFG++ LV+PV+N   FN +  +LK IC  C       ++  + ++K
Sbjct: 76  CATCHGSYHECPGHFGYLKLVLPVFNVGFFNNILDVLKSICKGCSRILLHEKDQREFLKK 135

Query: 61  L 61
           +
Sbjct: 136 M 136


>gi|303389791|ref|XP_003073127.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon
            intestinalis ATCC 50506]
 gi|303302272|gb|ADM11767.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon
            intestinalis ATCC 50506]
          Length = 1315

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 312/1006 (31%), Positives = 483/1006 (48%), Gaps = 174/1006 (17%)

Query: 232  KKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPP 291
            KK K+  SG +  SD ++I   +  N F +     D +  GF +     I  +  ++VPP
Sbjct: 182  KKDKNKGSGGVNSSDYEEINPLMALNIFRMMKE-DDYELLGFSESPERLI--IQSIIVPP 238

Query: 292  IKFRLPSKGGDS--VMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVN 349
               R PS   D     E   T+ +S+++  N  L    + + +   +I   W +LQ    
Sbjct: 239  SCIR-PSVSMDDEGTNEDDITIKISEIVHTNKVLKEG-IEKGNPLNLINEDWDHLQLQCA 296

Query: 350  VLFDGK----NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNE 405
            +L + +       GQ     GI Q L+ K G FR  L GKRV+++ R+VISPDP L++ E
Sbjct: 297  LLINSELPQVGIPGQP--IRGIVQRLKGKNGRFRCNLSGKRVDFSGRTVISPDPNLSIEE 354

Query: 406  IGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRIS 465
            +GIP   A  LT  ERVT +N  KL+  ++NG E +PGA +                   
Sbjct: 355  VGIPERMAKILTISERVTSFNKKKLQALVLNGPEKYPGANYV------------------ 396

Query: 466  IGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLK 525
            +G K        +  GK      EG++V RHL DGD+VL NRQP+LH+ SIM+H V+V  
Sbjct: 397  VGEKFKR----FLMYGKKDTELKEGEVVERHLLDGDMVLFNRQPSLHRMSIMSHKVKV-H 451

Query: 526  GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSL 585
            G KTLR +   C+ YNADFDGDEMNVH PQ E +RAE+  +++ +N  V P +G+P+ + 
Sbjct: 452  GNKTLRFNECVCTPYNADFDGDEMNVHVPQTEKARAESSILMSVSNNIVTPRHGEPIVAA 511

Query: 586  IQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL 645
             QD I    L+T KDTF +R+ F QL                       +S   +  + +
Sbjct: 512  TQDFITGLYLITGKDTFFDRERFGQL-----------------------VSYFSETRISM 548

Query: 646  LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKND 705
             PAI KP  L+T                       G +L +   K  F A ++ D +   
Sbjct: 549  KPAIKKPVELFT-----------------------GKQLVEALIKDSFAASRE-DYRSPY 584

Query: 706  KGKLS-----KTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLV 760
             G +S     ++ K H D +     +++                        L Y   L 
Sbjct: 585  GGCISLVGKNRSFKTHDDPNDGSVIILDN-----------------------LYYFGRLD 621

Query: 761  RGVIDKAQFADYGLVHTVQELYGSNTAGT-LLSALSRLFTVFLQMHGFTCGVDDLL---I 816
            + +I      D  L++ + ++  SN A   +++++++L + +L   GF+ G+DD+    I
Sbjct: 622  KSIIGGENKKD-SLIYAIMKV--SNKAAIRVMNSITKLCSRYLGEVGFSIGLDDVQPGPI 678

Query: 817  LKDKERER--KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
            L+ K+     K +L    +I        LE    +E     L+ EI   +          
Sbjct: 679  LRQKKETVVGKGYLECENKI--------LEYSKKSESSEEMLEMEISSIL---------- 720

Query: 875  FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
                  +++ +   S  INEL        + +N  + M   G+KGSK+N  Q+ + +GQQ
Sbjct: 721  ------NRIREECGSICINEL--------SIRNSPNTMQACGSKGSKINVSQMVACVGQQ 766

Query: 935  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
             + G R+P  +  + LP F      P + GF+ + F  GL   E++FH ++GREGLVDTA
Sbjct: 767  IVSGTRIPNGMDDRCLPHFRKGSRTPESKGFVRNSFFDGLTSPEFFFHAVSGREGLVDTA 826

Query: 995  VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALA 1054
            VKT+ +GY+QR L+K LE L + YD SVR+++  +VQF YGED +D      IS+ D   
Sbjct: 827  VKTAETGYMQRRLMKALEDLSVQYDGSVRNSNMEVVQFSYGEDQID----PVISEGDDPV 882

Query: 1055 ARERGRGRGRNKF-----CDKGSHTF------VMGRNQEMIYKKCSGQLDASNAYIMELP 1103
              ER   + ++ F       + SH+       V+   +E+I K    +   +  ++  L 
Sbjct: 883  NLERVFLQAKSVFLHQLNSGRFSHSLQPESCDVIDSLRELIPKGYPIERMINKRFVKSLQ 942

Query: 1104 DALKDNAEK------FADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEP 1157
            + +K  +E+       +  + S+    + F  +V  K +  + +PG  VG +A QS+GEP
Sbjct: 943  ELIKSKSEERFSFDGTSFPYFSSRDFVRTFFFMVSQKMMDLIIEPGTTVGAIAGQSIGEP 1002

Query: 1158 STQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
             TQMTL TFH AG   MN+TLG+PRL+EI+  A  +I TP+I   L
Sbjct: 1003 GTQMTLKTFHFAGVASMNITLGVPRLKEIIN-AVCNISTPIINAEL 1047



 Score = 42.0 bits (97), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TCG+    C GHFG + LV+PV+N  L     + L  +C  C
Sbjct: 67  CATCGEGLATCIGHFGEVKLVLPVFNIGLVKNTISTLNCLCKSC 110


>gi|321458572|gb|EFX69638.1| hypothetical protein DAPPUDRAFT_62003 [Daphnia pulex]
          Length = 1238

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 280/906 (30%), Positives = 428/906 (47%), Gaps = 155/906 (17%)

Query: 334  AKVIVARWMNLQQSVNVLFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVN 388
            +++I+  W  LQ    +  + + +    DM     + G+ Q L+ K+G FR  L GKRV+
Sbjct: 154  SQIILEDWYFLQFQCALYINSELSGIPFDMQPKKPSRGLVQRLKGKQGRFRGNLSGKRVD 213

Query: 389  YACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL 448
            ++ R+VISPDP L ++++G+P   A  LTYP  V   N+  +R  + NG +IHPGA    
Sbjct: 214  FSGRTVISPDPNLRIDQVGVPEMVAKILTYPTLVNEANIELMRKLVRNGPDIHPGAIFLK 273

Query: 449  DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQ 508
             K+S + +      R ++ R L   RG +++               RH+ D D+VL NRQ
Sbjct: 274  KKVSKLTISLKHGNRETLARNL--KRGDVIE---------------RHMMDEDIVLFNRQ 316

Query: 509  PTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVN 568
            P+LHK SIM H  ++L   +T R +   C+ YNADFDGDEM +HFPQ E +RAEA  ++ 
Sbjct: 317  PSLHKLSIMCHRAKILP-HRTFRFNECVCTPYNADFDGDEMTLHFPQTEEARAEALILMT 375

Query: 569  ANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGK 628
              +  V P NG+ L + IQD I  A LLT KD F +R + CQ++ S              
Sbjct: 376  NKSNLVTPRNGELLIAAIQDFITGAYLLTLKDAFFDRAKTCQMVAS-------------- 421

Query: 629  PGQRVLISRSEQEVLPLL--PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQ 686
                 +++  E  ++  L  P I KP  LW+GKQ+ + +L      RP          P 
Sbjct: 422  -----MLAGDEVNMVIKLPPPCIQKPAALWSGKQIFSLIL------RPN---------PG 461

Query: 687  DFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKE 746
            D  K       +   KKN+                                      E  
Sbjct: 462  DRIKVNLRTKGKEYSKKNE--------------------------------------EFC 483

Query: 747  LSEEKLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQ 803
            +++  LL+  ++++ G +DK+     +   + + +   YG + A   +  L R+ + ++ 
Sbjct: 484  VNDGFLLVRNSEVLAGCVDKSTIGSGSKINIFYVLLRDYGEDFAIQAMWKLCRVASYYMM 543

Query: 804  MHGFTCGVDDL----LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSE 859
              GF+ G+ D+     +LK+K++   +     +E  + + +  L    G + +   L+S+
Sbjct: 544  NRGFSIGIGDVTPGKTLLKEKQKLLDSGFSKCDEYIRLLSIGQLPCLPGCKKEE-SLESK 602

Query: 860  IEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKG 919
            I K + G  D A      K+      H S+S +                  +M+ SG+KG
Sbjct: 603  ITKELSGIRDQAGEVCKKKL------HPSNSPL------------------VMSKSGSKG 638

Query: 920  SKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEY 979
            S +N  Q+ + +GQQ L GKRVP     ++LP F      P A GF+ + F +GL P E+
Sbjct: 639  SYINISQMIACVGQQALNGKRVPNGFEDRSLPHFKRHSKIPAAKGFVSNSFYSGLSPTEF 698

Query: 980  YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            +F  M+GREGLVDTAV T+   Y+QR LIK LE L   YD +VR++ G I+QF YG DG+
Sbjct: 699  FFLAMSGREGLVDTAVTTAEPMYMQRRLIKFLEDLCCQYDSTVRNSAGEIIQFVYGGDGL 758

Query: 1040 D-----------------VHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQE 1082
            D                  H  +  S  D     +    +  N   D  S   +    Q 
Sbjct: 759  DPTYMEAKDRPVDFHRGFEHVKAAFSFPDEEPLDDIELQQAFNTIMDTDSFKMLGVDFQH 818

Query: 1083 MIYKKCSGQL----DASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLS 1138
             +      Q+         + ME    L    EK  ++    ++   +F    K K+  +
Sbjct: 819  ELRVFVESQVKRIKKVRQLFKMEGRSLL--TVEKHLERITVGQLV--EFCDFSKEKYERA 874

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +QS+GEP TQMTL TFH AG   MN+T G+PR++EI+  ASK I TPV
Sbjct: 875  KIEPGTAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN-ASKAISTPV 933

Query: 1199 ITCPLL 1204
            I+  LL
Sbjct: 934  ISTQLL 939


>gi|449330082|gb|AGE96346.1| DNA-directed RNA polymerase III 160 kDa subunit [Encephalitozoon
            cuniculi]
          Length = 1349

 Score =  381 bits (979), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 314/1018 (30%), Positives = 483/1018 (47%), Gaps = 193/1018 (18%)

Query: 222  KGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSI 281
            KGS  V S   ++ +    PL+  +V ++++   E+++EL  F+              S 
Sbjct: 221  KGSDGVHSSCCEEIN----PLVALNVFNMMK---EDDYELLGFLE-----------SPSR 262

Query: 282  FFLGVVLVPPIKFRLPSKGGDS--VMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
              +  V+VPP   R PS   D     E   T+ +S+++  N  L    + + +   +I  
Sbjct: 263  LIIQNVIVPPSCIR-PSVSMDDEGTNEDDITIKISEIVHTNKVLREG-IEKGNPLNLINE 320

Query: 340  RWMNLQQSVNVLFDGK----NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
             W +LQ    +L + +       GQ     GI Q L+ K G FR  L GKRV+++ R+VI
Sbjct: 321  DWDHLQLQCALLINSELPQIGIPGQP--VRGIVQRLKGKNGRFRCNLSGKRVDFSGRTVI 378

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMR 455
            SPDP L++ E+GIP   A  LT  ERVT  N  KL+  ++NG E +PGA +         
Sbjct: 379  SPDPNLSIEEVGIPERMAKILTISERVTRLNRRKLQALVLNGPENYPGANYV-------- 430

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
                      +G K        +  GK       G++V RHL DGD+VL NRQP+LH+ S
Sbjct: 431  ----------VGEKFKR----FLMYGKRDIELKYGEVVERHLMDGDMVLFNRQPSLHRMS 476

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            IM+H VRV +  KTLR +   C+ YNADFDGDEMNVH PQ E +RAEA  +++ +N  V 
Sbjct: 477  IMSHKVRVHRN-KTLRFNECVCTPYNADFDGDEMNVHVPQTEKARAEASVLMSVSNNIVT 535

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 635
            P +G+P+ +  QD I    L+T KDTF +R+ F QL+  S  S + +G            
Sbjct: 536  PRHGEPIVAATQDFITGLYLITGKDTFFDRERFGQLV--SYFSEARVG------------ 581

Query: 636  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
                     + PAI KP  L+TGKQ+I  ++                       K  F A
Sbjct: 582  ---------VKPAIRKPVELFTGKQLIEVLI-----------------------KDSFTA 609

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
              + +         + T  M     GK +                     + ++  + I 
Sbjct: 610  SIERN---------AVTGNMAVSLVGKNRSF---------------KTHDDPNDGSVAIL 645

Query: 756  KNDLVRGVIDKAQFADY----GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
             N    G +DK+          L++ + ++  S  A   ++++++L + +L   GF+ G+
Sbjct: 646  DNSYYFGRLDKSIVGGENKRDSLIYAIMKV-SSMAAVRAMNSITKLCSRYLGETGFSIGL 704

Query: 812  DDLL---ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGG 868
            DD+    IL+ K+          E + +R + E       ++I     K E  + M    
Sbjct: 705  DDVQPGPILRQKK----------EMVVRRGYAEC-----ESKILEYSKKPEANEEM---- 745

Query: 869  DAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTG-KNWISLMTTSGAKGSKVNFQQI 927
                   +M+++S LN+      I E      +K  G +N  ++M   G+KGSK+N  Q+
Sbjct: 746  ------LEMEISSILNR------IREECGSICIKELGIRNSPNIMQACGSKGSKINVSQM 793

Query: 928  SSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGR 987
             + +GQQ + G R+P  +  + LP F      P + GF+++ F  GL   E++FH ++GR
Sbjct: 794  VACVGQQIVSGTRIPNGMDERCLPHFKRGSRTPESKGFVLNSFFDGLTSPEFFFHAVSGR 853

Query: 988  EGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFI 1047
            EGLVDTAVKT+ +GY+QR L+K LE L I YD SVR+++  +VQF YGED +D      +
Sbjct: 854  EGLVDTAVKTAETGYMQRRLMKALEDLSIQYDGSVRNSNMEVVQFAYGEDQID----PAM 909

Query: 1048 SKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLD-------------- 1093
            S+ D     E+   R ++ F     H+     +    +    G +D              
Sbjct: 910  SEGDESINLEQVFLRAKSSFL----HSLGPSPDLYSSWLDEHGTIDILRRLTPKGYPFEH 965

Query: 1094 -ASNAYIMELPDALKDNAE-------KFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEP 1145
             A+  ++  L   ++   E        F   FLS +   + F  +V  K +  + +PG  
Sbjct: 966  IANRRFVGSLLRFMESKHEDKFCFGGTFYRYFLSKDFI-ETFFSMVSQKMMNLIVEPGTT 1024

Query: 1146 VGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            VG +A QS+GEP TQMTL TFH AG   MN+TLG+PRL+EI+  A  +I TP+I   L
Sbjct: 1025 VGAIAGQSIGEPGTQMTLKTFHFAGVASMNITLGVPRLKEIIN-AVCNISTPIINAEL 1081



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TCG+    C GHFG + LV+PV+N  L     + L  +C  C
Sbjct: 100 CATCGEGLATCIGHFGEVRLVLPVFNVGLIKNTISTLNCLCKSC 143


>gi|384497273|gb|EIE87764.1| hypothetical protein RO3G_12475 [Rhizopus delemar RA 99-880]
          Length = 1273

 Score =  381 bits (978), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 293/985 (29%), Positives = 462/985 (46%), Gaps = 161/985 (16%)

Query: 267  DMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPS--KGGDSVMEHPQTVLLSKVLQANIYL 323
            D +  G  ++ G   +++   L VPP   R PS  +  ++  E   T  L++++  N  +
Sbjct: 194  DCELLGLSEEHGRPEWYIWQYLPVPPACVR-PSVVQEDNTSNEDDLTAKLTEIIFTNAII 252

Query: 324  ANAYVNQPDNAKVIVARWMNLQQS----VNVLFDGKNAAGQRDMASGICQLLEKKEGLFR 379
              A + +      ++ +W  LQ +    +N    G   A       G+CQ L+ K+G FR
Sbjct: 253  -RAGLERGVTVMNLMEQWEFLQLAAALYINSEMPGVLNATSGKPTRGLCQRLKGKQGRFR 311

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
              L GKRV+++ R+VISPDP + ++++ +P   A  LT+PERV   N+ KLR ++ING  
Sbjct: 312  GNLSGKRVDFSGRTVISPDPNMRIDQVAVPERVAKVLTFPERVNRHNIHKLRQNVINGPF 371

Query: 440  IHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQD 499
            +HPGA +Y++K +        K  +  G + + +    +           G +V RHL D
Sbjct: 372  VHPGA-NYVEKQNGF------KRFLKFGNRQEIAADLQI-----------GDLVERHLSD 413

Query: 500  GDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVS 559
             DVVL NRQP+LH+ SIMAH  +V+   +T R +   CS YNADFDGDEMN+H PQ + +
Sbjct: 414  NDVVLFNRQPSLHRLSIMAHFAKVMPW-RTFRFNECVCSPYNADFDGDEMNMHLPQTQEA 472

Query: 560  RAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSS 619
            +AEA  ++   N  V P NG+PL +  QD I ++ LL+ KDTF  R EF Q         
Sbjct: 473  KAEAMELMGVKNNLVTPRNGEPLIAATQDFITASYLLSHKDTFYTRGEFAQACS------ 526

Query: 620  SGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVE 679
                          ++  ++ ++    P IWKP+ LWTGKQV                  
Sbjct: 527  --------------MMCDADLKIDLPPPVIWKPQRLWTGKQV------------------ 554

Query: 680  RGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEK 739
                     F   F  +K+S              K+      K K  V+         ++
Sbjct: 555  ---------FNVLFRPNKES--------------KVLLSVEAKTKSFVK---------QE 582

Query: 740  NKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSR 796
             +  +   ++  L++  ++++ G++DKA   D     + + +   YG   A   ++ L++
Sbjct: 583  GRLPDMCPNDGWLVVQNSEIMCGLVDKAVVGDGNKNSVFYVILRDYGPIEAAKCMNRLAK 642

Query: 797  LFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKL 856
            L   +L   GF+ G+ D+        ER + +  +E                 E    K 
Sbjct: 643  LCARWLANRGFSIGISDV-----TPGERLSRIKFNE----------------VETAYAKC 681

Query: 857  KSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSG 916
               I K   G  D      + +    +     S+V  +L    + +    N  S+M   G
Sbjct: 682  DEVIAKYNSGQLDTMPGCNEEQTMESIVSGILSAVRGDLGKVCMEELNMYNSPSIMARCG 741

Query: 917  AKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRP 976
            +KGS++N  Q+ + +GQQ + G R+P     ++LP F      P A GF+ + F TGL P
Sbjct: 742  SKGSQINVSQMVACVGQQIISGTRIPNGFQDRSLPHFLKHSKTPPAKGFVRNSFYTGLSP 801

Query: 977  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE 1036
             E+ FH ++GREGLVDTAVKT+ +GY+ R L+K  E L   YD SVR+++G+++QF YG 
Sbjct: 802  TEFLFHAISGREGLVDTAVKTAETGYMARRLMKAFEDLTTHYDLSVRNSEGAMLQFFYGA 861

Query: 1037 D----------GVDVHQTSFISKFDALAARERGRGR---GRNKFCDKGSHTFVMGRN--- 1080
            D          GV V     +     +      RG      N    +   T +  +N   
Sbjct: 862  DGLDPMTIEGEGVPVEFARNLRHVQEITPLNGERGLLPWEINYITQQEIQTEIWQKNCLP 921

Query: 1081 ------QEMIYKKCSGQL-DASNAYIMELPDALKDN-------------AEKFADK--FL 1118
                   + + +K +G+L     A+ M+   A+ D              A K   +  F 
Sbjct: 922  SFIDMVTKFVEEKIAGRLAKIRKAHGMQSGLAMPDEDYMDIDIDEDEDEAVKTVVRNLFT 981

Query: 1119 SNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTL 1178
              E   +D+L +   K++ +  +PG  VG + + S+GEP TQMTL TFH AG   MN+TL
Sbjct: 982  ITERQLRDYLHVCVSKYMKAKIEPGTAVGAIGAHSIGEPGTQMTLKTFHFAGVASMNITL 1041

Query: 1179 GIPRLQEILTIASKDIKTPVITCPL 1203
            G+PR++EI+  A+K I TP+ITC L
Sbjct: 1042 GVPRIKEIIN-AAKVISTPIITCEL 1065


>gi|8777343|dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Arabidopsis thaliana]
          Length = 1383

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 293/953 (30%), Positives = 456/953 (47%), Gaps = 149/953 (15%)

Query: 282  FFLGVVLVPPIKFRLPSK--GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
              +  +LVPP+  R PS   GG    E+  T  L +++  N  L +  ++QP ++   + 
Sbjct: 253  LIITCMLVPPLSIR-PSVMIGGIQSNENDLTARLKQIILGNASL-HKILSQPTSSPKNMQ 310

Query: 340  RWMNLQ----QSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
             W  +Q    + +N    G     +    SGI Q L+ K G FR  L GKRV +  R+VI
Sbjct: 311  VWDTVQIEVARYINSEVRGCQNQPEEHPLSGILQRLKGKGGRFRANLSGKRVEFTGRTVI 370

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGA--THYLDKLST 453
            SPDP L + E+GIP   A  LT+PE V+  N+ KLR  + NG   +PGA    Y D  S+
Sbjct: 371  SPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPDG-SS 429

Query: 454  MRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHK 513
              L  + + RI+                   D    G +V RHLQ+GDVVL NRQP+LH+
Sbjct: 430  RTLVGDYRKRIA-------------------DELAIGCIVDRHLQEGDVVLFNRQPSLHR 470

Query: 514  PSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQY 573
             SIM H  R++   +TLR + + C+ YNADFDGDEMN+H PQ E +R EA  ++   N  
Sbjct: 471  MSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNL 529

Query: 574  VRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRV 633
              P NG+ L +  QD + S+ L+T+KDTF +R  F  +    G    G+ S         
Sbjct: 530  CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMG---DGMDSID------- 579

Query: 634  LISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRF 693
                     LP  P I KP  LWTGKQ+ + +L      RP                   
Sbjct: 580  ---------LP-TPTILKPIELWTGKQIFSVLL------RP------------------- 604

Query: 694  NADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLL 753
                            + + +++   + K+K   +G+ G ++    N         +  +
Sbjct: 605  ----------------NASIRVYVTLNVKEKNFKKGEHGFDETMCIN---------DGWV 639

Query: 754  IYKN-DLVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTC 809
             ++N +L+ G + KA   +    GL   +   Y S+ A   ++ L++L   ++ +HGF+ 
Sbjct: 640  YFRNSELISGQLGKATLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSI 699

Query: 810  GVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGD 869
            G+DD+   ++  +ERK+ +    +   + H +  E   G               ++ G D
Sbjct: 700  GIDDVQPGEELSKERKDSIQFGYD---QCHRKIEEFNRG------------NLQLKAGLD 744

Query: 870  AAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS---LMTTSGAKGSKVNFQQ 926
             A +  + ++T  LN       I E   +  +  +G +W +   +M+  G+KGS +N  Q
Sbjct: 745  GAKS-LEAEITGILN------TIREATGKACM--SGLHWRNSPLIMSQCGSKGSPINISQ 795

Query: 927  ISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAG 986
            + + +GQQ + G R P     ++LP F     +P A GF+ + F +GL   E++FH M G
Sbjct: 796  MVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATEFFFHTMGG 855

Query: 987  REGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVH---- 1042
            REGLVDTAVKT+ +GY+ R L+K LE L + YD +VR+A G I+QF YG+DG+D      
Sbjct: 856  REGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGDDGMDPALMEG 915

Query: 1043 QTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMI----YKKCSGQLDASNAY 1098
            +      F+ L  + +     R+      S        +E++     + C+     S   
Sbjct: 916  KDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEEELVRHDKSRVCTDAFVKSLRE 975

Query: 1099 IMEL--------PDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLA 1150
             + L        P  L   + +  +      +  Q F+K+   ++     + G  +G + 
Sbjct: 976  FVSLLGVKSASPPQVLYKASGQKYEILPLIYINMQVFVKICVFRYREKKIEAGTAIGTIG 1035

Query: 1151 SQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            +QS+GEP TQMTL TFH AG   MN+T G+PR+ EI+  ASK+I TPVI+  L
Sbjct: 1036 AQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEIIN-ASKNISTPVISAEL 1087



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC      CPGH+G++ L +PVYN   FN +  +LK IC  C +     +  E  +RK
Sbjct: 75  CTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDEKLYEDHLRK 134

Query: 61  L 61
           +
Sbjct: 135 M 135


>gi|334188504|ref|NP_001190573.1| nuclear RNA polymerase C1 [Arabidopsis thaliana]
 gi|332009887|gb|AED97270.1| nuclear RNA polymerase C1 [Arabidopsis thaliana]
          Length = 1391

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 296/959 (30%), Positives = 456/959 (47%), Gaps = 161/959 (16%)

Query: 282  FFLGVVLVPPIKFRLPSK--GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
              +  +LVPP+  R PS   GG    E+  T  L +++  N  L +  ++QP ++   + 
Sbjct: 263  LIITCMLVPPLSIR-PSVMIGGIQSNENDLTARLKQIILGNASL-HKILSQPTSSPKNMQ 320

Query: 340  RWMNLQ----QSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
             W  +Q    + +N    G     +    SGI Q L+ K G FR  L GKRV +  R+VI
Sbjct: 321  VWDTVQIEVARYINSEVRGCQNQPEEHPLSGILQRLKGKGGRFRANLSGKRVEFTGRTVI 380

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGA--THYLDKLST 453
            SPDP L + E+GIP   A  LT+PE V+  N+ KLR  + NG   +PGA    Y D  S+
Sbjct: 381  SPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPDG-SS 439

Query: 454  MRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHK 513
              L  + + RI+                   D    G +V RHLQ+GDVVL NRQP+LH+
Sbjct: 440  RTLVGDYRKRIA-------------------DELAIGCIVDRHLQEGDVVLFNRQPSLHR 480

Query: 514  PSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQY 573
             SIM H  R++   +TLR + + C+ YNADFDGDEMN+H PQ E +R EA  ++   N  
Sbjct: 481  MSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNL 539

Query: 574  VRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRV 633
              P NG+ L +  QD + S+ L+T+KDTF +R  F  +    G    G+ S         
Sbjct: 540  CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMG---DGMDSID------- 589

Query: 634  LISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRF 693
                     LP  P I KP  LWTGKQ+ + +L      RP                   
Sbjct: 590  ---------LP-TPTILKPIELWTGKQIFSVLL------RP------------------- 614

Query: 694  NADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLL 753
                            + + +++   + K+K   +G+ G ++    N         +  +
Sbjct: 615  ----------------NASIRVYVTLNVKEKNFKKGEHGFDETMCIN---------DGWV 649

Query: 754  IYKN-DLVRGVIDKAQFA----------DYGLVHTVQELYGSNTAGTLLSALSRLFTVFL 802
             ++N +L+ G + KA  A            GL   +   Y S+ A   ++ L++L   ++
Sbjct: 650  YFRNSELISGQLGKATLALDIFPLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWI 709

Query: 803  QMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEK 862
             +HGF+ G+DD+   ++  +ERK+ +    +   + H +  E   G              
Sbjct: 710  GIHGFSIGIDDVQPGEELSKERKDSIQFGYD---QCHRKIEEFNRG------------NL 754

Query: 863  AMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS---LMTTSGAKG 919
             ++ G D A +  + ++T  LN       I E   +  +  +G +W +   +M+  G+KG
Sbjct: 755  QLKAGLDGAKS-LEAEITGILN------TIREATGKACM--SGLHWRNSPLIMSQCGSKG 805

Query: 920  SKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEY 979
            S +N  Q+ + +GQQ + G R P     ++LP F     +P A GF+ + F +GL   E+
Sbjct: 806  SPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATEF 865

Query: 980  YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            +FH M GREGLVDTAVKT+ +GY+ R L+K LE L + YD +VR+A G I+QF YG+DG+
Sbjct: 866  FFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGDDGM 925

Query: 1040 DVH----QTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMI----YKKCSGQ 1091
            D      +      F+ L  + +     R+      S        +E++     + C+  
Sbjct: 926  DPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEEELVRHDKSRVCTDA 985

Query: 1092 LDASNAYIMEL-------PDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGE 1144
               S    + L       P  +   A    DK L      + F+K+   ++     + G 
Sbjct: 986  FVKSLREFVSLLGVKSASPPQVLYKASGVTDKQL------EVFVKICVFRYREKKIEAGT 1039

Query: 1145 PVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
             +G + +QS+GEP TQMTL TFH AG   MN+T G+PR+ EI+  ASK+I TPVI+  L
Sbjct: 1040 AIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEIIN-ASKNISTPVISAEL 1097



 Score = 45.4 bits (106), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRIC 41
           C TC      CPGH+G++ L +PVYN   FN +  +LK IC
Sbjct: 75  CTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCIC 115


>gi|396496347|ref|XP_003844722.1| similar to DNA-directed RNA polymerase iii largest subunit
            [Leptosphaeria maculans JN3]
 gi|312221303|emb|CBY01243.1| similar to DNA-directed RNA polymerase iii largest subunit
            [Leptosphaeria maculans JN3]
          Length = 1520

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 308/1039 (29%), Positives = 477/1039 (45%), Gaps = 197/1039 (18%)

Query: 244  PSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS---KG 300
            P  V ++ +K+   + EL + I +         A   +     + VPP+  R PS   +G
Sbjct: 287  PLRVLNLFKKISPEDCELLAMIPE--------DARPEMLIWEYMPVPPVALR-PSVMQEG 337

Query: 301  G---DSVMEHPQTVL-LSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD--- 353
            G   D V      +  +S +++A   LA  +  Q     +++ +W  LQ  + +  +   
Sbjct: 338  GATEDDVTNKIGDICHISSIIRAG--LARGFPLQ-----ILMEQWDFLQLQIAMYINSDA 390

Query: 354  -GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYF 412
             G    G +    G  Q L+ K G FRQ L GKRV+++ R+VI PDP L+++E+ +P   
Sbjct: 391  PGLKQQGLQKTMRGFSQRLKGKGGRFRQNLSGKRVDFSGRTVIGPDPNLSIDEVAVPERI 450

Query: 413  ALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRIS-IGRKLD 471
            A  LTYPE+ T +N+ KLR  + NGA  +PGA + L    T   P   + +IS I     
Sbjct: 451  AKNLTYPEKATRYNIDKLRRLVKNGANEYPGANYIL----TDEGPNKDRGKISLIALSRH 506

Query: 472  TSRGAIVQ-PGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTL 530
              RG  ++ P K       G +V RH++DGD+VL NRQP+LHK SI++H  ++ +  +T 
Sbjct: 507  AKRGEKLEGPAKRLKI---GDIVERHIEDGDIVLFNRQPSLHKLSILSHRAKI-RPWRTF 562

Query: 531  RMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHI 590
            R++   C+ YNADFDGDEMN+H PQ E +R EA  ++        P NG P+ + IQD I
Sbjct: 563  RLNECVCNPYNADFDGDEMNLHVPQTEEARTEATELMGVKYNLATPKNGTPIIAAIQDFI 622

Query: 591  VSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIW 650
             +A LL+ K+ F +R  FCQ++       +G G++    G  + I     E+ P  P +W
Sbjct: 623  TAAYLLSNKNNFYDRRTFCQIV---NYMFNGDGAYDPDTGLTLPI-----EIPP--PVVW 672

Query: 651  KPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLS 710
            KP+ LWTGKQV   ++                  P    +   N +    + KN      
Sbjct: 673  KPQALWTGKQVFNLLMR-----------------PNKASRVLVNLEAACKQFKN------ 709

Query: 711  KTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFA 770
                                PG+  +  +N        +  L+I  ++++ GV+DKA   
Sbjct: 710  -------------------TPGQSPDLNEN--------DAYLVIRNSEVMCGVMDKATVG 742

Query: 771  D---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNH 827
            D     + + +   +G + A   ++ LSRL   +L  +GF+ G+ D+             
Sbjct: 743  DGKKDSVFYVMMRDFGPDHAVQGMNRLSRLSARWLTNNGFSLGISDV------------- 789

Query: 828  LHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN--K 885
              G + + K+   +AL  E  A+ D + +  +  K  R  G       + ++   L+  +
Sbjct: 790  TPGEKLVQKK---QALVEEAYAKCDKLIMDFKEGKLQRDAGCDEEQTMENRIGGILSGVR 846

Query: 886  HTSSSVINELLSEGLLKPTGKNWIS--LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPR 943
              +  +  E LS          W S  LM   G+KGS +N  Q+ + +GQQ + G RV  
Sbjct: 847  QAAGDICFEELSR---------WNSPLLMAKCGSKGSNINVSQMVASVGQQMIGGARVAD 897

Query: 944  MVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYL 1003
                +TLP F      P + GF+ + F +GL P E+ FH M+GREGLVDTAVKT+ +GY+
Sbjct: 898  GFHHRTLPHFPKAARQPASKGFVSNSFFSGLTPSEFIFHAMSGREGLVDTAVKTAETGYM 957

Query: 1004 QRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDG---VDVHQTSFISKFDALAARERGR 1060
             R L+K+LE L   YD +VR++ G++VQF YG+D    VD+   +    FD      R  
Sbjct: 958  SRRLMKSLEDLSAQYDDTVRNSSGTVVQFQYGDDNLDPVDMEGKAKPVHFD------RTF 1011

Query: 1061 GRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSN 1120
                    D    T   G  +E    K + + +    Y  +L D  K +    +D  +  
Sbjct: 1012 SHAVTSTWDNSEPTLSPGEVREYTEAKLNAERNKYPRY--KLDDVTKLDYRDKSDAGIDQ 1069

Query: 1121 EMAKQDFLKLVKHKFV------------LSLAQPGEP----------------------- 1145
            + + +DFL  V+                L + +P  P                       
Sbjct: 1070 KESVRDFLDTVQDYIFKKAGKLETTLAYLGITEPNVPRDERDLEKYSLADGIAKISQRAL 1129

Query: 1146 ---------------------VGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
                                 VG + +QS+GEP TQMTL TFH AG   M++T G+PR++
Sbjct: 1130 DAFITLCLTKYHRSRVQPGHAVGAIGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIK 1189

Query: 1185 EILTIASKDIKTPVITCPL 1203
            EI+  AS  I TPVITC L
Sbjct: 1190 EIIN-ASSTISTPVITCEL 1207



 Score = 42.4 bits (98), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 28/61 (45%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG+    C GHFGHI L +P ++      +  +L  IC  C        E  K +R 
Sbjct: 128 CGTCGEGLDKCNGHFGHIKLALPAFHVGYLKHIIEVLNCICKDCSRVLLDETERRKYLRS 187

Query: 61  L 61
           +
Sbjct: 188 M 188


>gi|326479108|gb|EGE03118.1| DNA-directed RNA polymerase III largest subunit [Trichophyton equinum
            CBS 127.97]
          Length = 1427

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 315/1039 (30%), Positives = 484/1039 (46%), Gaps = 190/1039 (18%)

Query: 218  RRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKA 277
            R  ++   A P   K  + +F   L P  V  +  ++   + EL S   D  +  +    
Sbjct: 211  RSFEEAKKANPDIEKHYRRVFDD-LNPLRVLKLFRRISNEDCELLSLNVDGARPEY---- 265

Query: 278  GHSIFFLGVVLVPPIKFRLPSKGGD-SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
                F    +  PP+  R PS G + +  E   T  L  ++Q+N+ L  A +++    + 
Sbjct: 266  ----FLWQFIPAPPVPIR-PSVGQEGASTEDDLTAKLGDIVQSNLNLKMA-LDKGAPVQT 319

Query: 337  IVARW--MNLQQSVNVLFD--GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACR 392
            I+  W  M LQ +V +  D  G      +    G+CQ L+ K+G FR  L GKRV+++ R
Sbjct: 320  IIECWDYMQLQIAVYINSDIPGLQNTDSKKTIRGLCQRLKGKQGRFRGNLSGKRVDFSGR 379

Query: 393  SVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLS 452
            +VISPDP L ++E+ +P   A+ +TYPERVT +N  KLR  I NG +  PGA + + + +
Sbjct: 380  TVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCIRNGTKTWPGANYLIKEGN 439

Query: 453  TMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLH 512
            + RL         I  +L                  EG +V RHL+DGD+VL NRQP+LH
Sbjct: 440  SFRLFLKYGNLNMIANQLR-----------------EGDIVERHLEDGDIVLFNRQPSLH 482

Query: 513  KPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQ 572
            K SI++H V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA  ++   + 
Sbjct: 483  KLSILSHFVKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKSN 541

Query: 573  YVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQR 632
               P NG+P+ + IQD I +A LL+ KD F +R  F Q+  S                  
Sbjct: 542  LATPKNGEPIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLS------------------ 583

Query: 633  VLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 692
            +L S +  E+ P  PA  KP+ LWTGKQV + ++                         R
Sbjct: 584  MLDSSTRFELPP--PATIKPQMLWTGKQVFSVLM-------------------------R 616

Query: 693  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEK- 751
             N D                 K++ D + ++ ++V+G+P             ++L E   
Sbjct: 617  SNKDCPV--------------KVNLDAACRQLKLVKGQP-------------RDLCENDG 649

Query: 752  -LLIYKNDLVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             L I  ++++ GV DK+         +   +Q  +G   A   ++ LS+L   +L   GF
Sbjct: 650  WLCIRNSEMLCGVADKSTIGAGKKDNIFFVIQRDFGYAAAAEAMNRLSKLSARWLTNKGF 709

Query: 808  TCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGG 867
            + G+ D+   +   R +   ++ + +                + D +   +  EK   G 
Sbjct: 710  SIGITDVYPGESLVRLKDTLINTAFQ----------------QCDDLITAASKEKPQMGK 753

Query: 868  GDAAVAYFDMKMTSQLNK---HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNF 924
             D+     + ++T  LNK         I+EL        +  N   +M T G+KGS +N 
Sbjct: 754  SDSRQTA-ENEITGILNKVRQQAGEYCISEL--------SKHNAPLIMATCGSKGSNINV 804

Query: 925  QQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCM 984
             Q+ + +GQQ +E  RV +    +TLP F        A GF+ + F +GL P E+ FH M
Sbjct: 805  SQMVAVVGQQSIENARVSKGFQDRTLPHFARHSQHALAKGFVRNSFFSGLTPTEFLFHAM 864

Query: 985  AGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE---DGVDV 1041
            +GREGL+DTAVKT+ +GY+ R L+K+LE L   YD +VRD+   I+QF YG+   D V++
Sbjct: 865  SGREGLIDTAVKTAETGYMSRRLMKSLEDLSTRYDNTVRDSSSFIIQFQYGDDQLDPVNM 924

Query: 1042 HQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIME 1101
              ++    FD      R      +   DK       G + + I   C   +      ++ 
Sbjct: 925  EASAKPVHFD------RTFTHAESTTYDKDEK----GLSADEILALCEELIAPERKKLVR 974

Query: 1102 ---LPDALKDNAEK-FA-DKFLSNEMAKQDFLKLVKHKFVLSLAQ--PGEP--------- 1145
               L + L   AE  FA D++ SN    +DFL  ++       AQ  P +          
Sbjct: 975  YDLLGNTLSYKAETDFATDQWESN----RDFLSSIEEYVAAKAAQLRPSDNEEGKEQMAF 1030

Query: 1146 -----------VGL-----LASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTI 1189
                        GL     L    +  P TQMTL TFH AG   M++T G+PR++EI+  
Sbjct: 1031 THTSKISARTLKGLHHFEPLVHSPLENPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN- 1089

Query: 1190 ASKDIKTPVITCPLLVGKT 1208
            ASK+I TP+ITC  LV KT
Sbjct: 1090 ASKEISTPIITCE-LVNKT 1107


>gi|242015075|ref|XP_002428200.1| DNA-directed RNA polymerase III largest subunit, putative [Pediculus
            humanus corporis]
 gi|212512752|gb|EEB15462.1| DNA-directed RNA polymerase III largest subunit, putative [Pediculus
            humanus corporis]
          Length = 1364

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 309/1010 (30%), Positives = 467/1010 (46%), Gaps = 186/1010 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--- 298
            L P DV +++E++ E++  L      M               L  + VPP+  R PS   
Sbjct: 219  LTPLDVLNLLERIPEDDVCLLCMNPAMVHP--------RDLMLTRLPVPPLCVR-PSVIS 269

Query: 299  --KGG----DSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV--IVARWMNLQQSVNV 350
              K G    D  M+  + + ++ V+Q +         +   AKV  I   W  LQ    +
Sbjct: 270  ELKSGTNEDDLTMKLSEIIFINDVIQKH---------RQSGAKVHMINEDWDFLQLHCAL 320

Query: 351  LFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNE 405
              + +       M       G+ Q L+ K+G FR  L GKRV+++ R+VISPDP L +++
Sbjct: 321  YINSETTGIPLSMQPKKATRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIDQ 380

Query: 406  IGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRIS 465
            +G+P + A  LT+PE+V   N+  LR+ + NG + HPGA    D+        N K  + 
Sbjct: 381  VGVPEHVAKILTFPEKVNRANIFLLRELVRNGPDTHPGANFVEDR------NGNSKRYLR 434

Query: 466  IGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLK 525
             G +   S          S+ +F G +V RHL D D+VL NRQP+LHK SIMAH  +VLK
Sbjct: 435  YGNRSKIS----------SELKF-GDVVERHLIDDDIVLFNRQPSLHKLSIMAHRAKVLK 483

Query: 526  GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSL 585
              +T R +   C+ YNADFDGDEMN+H PQ   ++AEA  +++       P NG+ L + 
Sbjct: 484  -HRTFRFNECVCTPYNADFDGDEMNLHLPQTLEAKAEALVLMSNKANLATPRNGELLIAA 542

Query: 586  IQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL 645
             QD I  A LLT+K+TF  + +   LL              GK     +      ++ P 
Sbjct: 543  TQDFITGAYLLTQKNTFFTQAKANWLLAC---------ILAGKDANLHI------DLPP- 586

Query: 646  LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKND 705
             PAI KP  LWT KQ+ + +L                                   K N 
Sbjct: 587  -PAIIKPMRLWTAKQIFSVIL-----------------------------------KPNK 610

Query: 706  KGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVID 765
            K K+   N   K K+   +E                  E  +++  +LI  + L+ G +D
Sbjct: 611  KCKIV-CNLRTKGKAYTSRE------------------EMCVNDSFVLIRNSVLLAGTMD 651

Query: 766  KAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL----ILK 818
            K      +   +++ +   +G + A T++  L+R+ + FL   GF+ G+ D+     +L+
Sbjct: 652  KGTLGSGSKDNILYILLRDWGEDAAATVMWRLARIASWFLMNRGFSIGLGDVTPGVGLLR 711

Query: 819  DKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMK 878
             KE+          E  K +    L  + G  ID   L++ I                +K
Sbjct: 712  AKEKLLNAGYSKCVEYIKAMEAGKLPCQPGCTIDE-TLEAVI----------------LK 754

Query: 879  MTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEG 938
              S +  H   + + EL S         N   +M   G+KGS +N  Q+ + +GQQ + G
Sbjct: 755  ELSVIRDHAGKACLQELHSS--------NSPLIMALCGSKGSFINISQMIACVGQQAISG 806

Query: 939  KRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTS 998
            KRVP     + LP F  +   P A GF+ + F + L P E++FH M GREGLVDTAVKT+
Sbjct: 807  KRVPDKFENRALPQFERYTKIPAAKGFVENSFYSSLTPTEFFFHTMGGREGLVDTAVKTA 866

Query: 999  RSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARER 1058
             +GY+QR L+K LE L + YD +VR++ G I+QF YG DG+D    +++   D     +R
Sbjct: 867  ETGYMQRRLVKALEDLCVQYDMTVRNSMGEIIQFNYGGDGLD---PTYMEGKDCPVNFQR 923

Query: 1059 GRGRGRNKFCDKGSHTF----VMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFA 1114
                 R K+  +         V     E++  +  G  D  + +  +L + +     K A
Sbjct: 924  TLDHIRAKYPYREEEALDSISVEKATDELLNTEEFGVCD--DVFKFDLKNFMSGIVRKMA 981

Query: 1115 ---DKFLSNEMAKQD------------------FLKLVKHKFVLSLAQPGEPVGLLASQS 1153
                KF  NE    D                  F ++ + K++ +  + G  VG LA+QS
Sbjct: 982  LTRQKFGYNERNLSDIPKAIIQIERLTVSQIVEFFQICRKKYLRAKVEAGTAVGALAAQS 1041

Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            +GEP TQMTL TFH AG   MN+T G+PR++EI+  ASK I TP+IT  L
Sbjct: 1042 IGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN-ASKKISTPIITAYL 1090


>gi|297793561|ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297310500|gb|EFH40924.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1376

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 294/943 (31%), Positives = 453/943 (48%), Gaps = 146/943 (15%)

Query: 287  VLVPPIKFRLPSK--GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNL 344
            +LVPP+  R PS   GG    E+  T  L  ++Q N  L +  ++QP  +   +  W  +
Sbjct: 258  MLVPPLSIR-PSVMIGGTRSNENDITERLKLIIQNNACL-HRILSQPTTSPKNMQVWDTV 315

Query: 345  QQSV----NVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
            Q  V    N    G     ++   SG+ Q L+ K+G FR  L GKRV Y  R+VISPDP 
Sbjct: 316  QSEVAKYINSEVRGVQNQPEKTPLSGLLQRLKGKQGRFRANLSGKRVEYTGRTVISPDPN 375

Query: 401  LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGA--THYLDKLSTMRLPP 458
            L + E+GIP   A  LT+PE V+  N+ KLR  + NG   +PGA    Y D  S+  L  
Sbjct: 376  LKITEVGIPILMARILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPDG-SSRTLVG 434

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
            + + RI                   +D    G +V RHL++GD VL NRQP+LH+ SIM 
Sbjct: 435  DYRKRI-------------------ADELTIGCIVDRHLEEGDAVLFNRQPSLHRMSIMC 475

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H  R++   +TLR + + C+ YNADFDGDEMN+H PQ E +R EA  ++   N    P N
Sbjct: 476  HRARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKN 534

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            G+ L +  QD + ++ L+T+KDTF +R  F  +    G    G+ +              
Sbjct: 535  GEILVASTQDFLTTSFLITRKDTFYDRAAFSLICSYMG---DGMDAID------------ 579

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
                LP  P I KP  LWTGKQ+ + +L      RP   V                    
Sbjct: 580  ----LP-TPTILKPIELWTGKQLFSVLL------RPNASV-------------------- 608

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN- 757
                           +++   + K+K   +G+ G +         E     +  + ++N 
Sbjct: 609  ---------------RVYVTLNVKEKNFKKGEHGFD---------ETMCVNDGWVYFRNS 644

Query: 758  DLVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
            +L+ G + KA   +    GL   +   Y S+ A   ++ L++L   ++ +HGF+ G+DD+
Sbjct: 645  ELISGQLGKATLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDV 704

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
               ++  +ERK+ +    +   + H +  E   G               ++ G D A + 
Sbjct: 705  QPGEELNKERKDSIQFGYD---QCHRKIEEFNRG------------NLQLKAGLDGAKS- 748

Query: 875  FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS---LMTTSGAKGSKVNFQQISSHL 931
             + ++T  LN       I E   +  +  +G +W +   +M+  G+KGS +N  Q+ + +
Sbjct: 749  LEAEITGILN------TIREATGKACM--SGLHWRNSPLIMSQCGSKGSPINISQMVACV 800

Query: 932  GQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLV 991
            GQQ + G R P     ++LP F     +P A GF+ + F +GL   E++FH M GREGLV
Sbjct: 801  GQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATEFFFHTMGGREGLV 860

Query: 992  DTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVH----QTSFI 1047
            DTAVKT+ +GY+ R L+K LE L + YD +VR+A G I+QF YG+DG+D      +    
Sbjct: 861  DTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGDDGMDPALMEGKDGAP 920

Query: 1048 SKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALK 1107
              FD L  + +     R+      S        +E++    S     ++A++  L + + 
Sbjct: 921  LNFDRLFLKIQATCPPRSHHNYLSSEELSQKFEEELVRHDKSRV--CTDAFVKSLREFVS 978

Query: 1108 DNAEKFAD--KFLSNEMAKQD-----FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQ 1160
                K A   + L       D     F+K+   ++     + G  +G + +QS+GEP TQ
Sbjct: 979  LLGVKSASTPQVLYKASGVTDKQLEVFVKICVSRYREKKIEAGTAIGTIGAQSIGEPGTQ 1038

Query: 1161 MTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            MTL TFH AG   MN+T G+PR+ EI+  ASK+I TPVI+  L
Sbjct: 1039 MTLKTFHFAGVASMNITQGVPRINEIIN-ASKNISTPVISAEL 1080



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC      CPGH+G++ L +PVYN   FN +  +LK IC  C +     +  E  +RK
Sbjct: 75  CTTCDGNFQNCPGHYGYLKLDLPVYNVGFFNFILDILKCICKRCSNMLLDEKLYEDHLRK 134

Query: 61  L 61
           +
Sbjct: 135 M 135


>gi|239607218|gb|EEQ84205.1| DNA-directed RNA polymerase I subunit [Ajellomyces dermatitidis ER-3]
          Length = 1646

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 227/489 (46%), Positives = 302/489 (61%), Gaps = 38/489 (7%)

Query: 746  ELSEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFL 802
            E SEE  +I+++ +L+ G++DKAQ   +  GLVH+V E+YG   AG LL  L RL T FL
Sbjct: 727  EGSEEGQVIFRDGELLCGILDKAQLGPSPRGLVHSVHEIYGHVVAGKLLGVLGRLLTKFL 786

Query: 803  QMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG-AEIDPIKLKSEIE 861
             M  FTCG+DDL + K     RK  L  +E+IG+++ L+ + L+    E +  +LK  +E
Sbjct: 787  HMRAFTCGMDDLRLTKKGNEARKRKLEEAEDIGRKIALKYVTLDQTKVEDEEAELKRRLE 846

Query: 862  KAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSK 921
             A+R   DA  A  D    SQ  K  SS + +  L  GL KP   N +  MT+SGAKGS 
Sbjct: 847  DALRD--DAKQAGLDAVFNSQTGK-LSSEITSACLPTGLEKPFPWNQMQAMTSSGAKGSV 903

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            VN   IS +LGQQ LEG+RVP M+SGKTLPSF P++ +  AGGFI  RFLTG++PQEYYF
Sbjct: 904  VNANLISCNLGQQVLEGRRVPVMISGKTLPSFRPFETSLMAGGFISGRFLTGIKPQEYYF 963

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD-ADGSIVQFCYGEDGVD 1040
            H MAGREGL+DTAVKTSRSGYLQRCLIK +E LK  YD +VR+ ADGS++QF YGEDG++
Sbjct: 964  HAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDNTVRETADGSVMQFLYGEDGLE 1023

Query: 1041 VHQTSFISKFDALA------ARERGRGRGRNKFCDKGSHTFVMGRNQEMIYK-KCSGQLD 1093
            + + + +  F  LA        E       NK  D  +  +    NQ  I K + +G+LD
Sbjct: 1024 ITKQNHLQDFTFLAQNFWSVVEELNGSDELNKVKDDKAGEW----NQNAIKKLRKTGKLD 1079

Query: 1094 -----------------ASNAYIMELPDALKDNAEKFADKFLSNE--MAKQDFLKLVKHK 1134
                              S ++ M L    K+N +K   +    E  ++K+DF +++  K
Sbjct: 1080 CVDPALSLFPPGSCYGSTSESFAMALRKYQKENPDKLLKEKGKTESRISKKDFTRVMNMK 1139

Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
            ++ S+ +PGE VG++A QS+GEPSTQMTLNTFHLAG    NVTLGIPRL+EI+  AS  I
Sbjct: 1140 YMRSVVEPGESVGIVAGQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASDKI 1199

Query: 1195 KTPVITCPL 1203
             TP +T  L
Sbjct: 1200 LTPTMTGVL 1208



 Score =  356 bits (914), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 238/696 (34%), Positives = 360/696 (51%), Gaps = 73/696 (10%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    + C GH GHI+L V VYN   F+ L+ LL+  C +CH F+ SR +++    K
Sbjct: 63  CTTCRLNSWSCNGHAGHIELPVHVYNVTFFDQLFRLLRAQCAYCHRFRMSRADIKSYTCK 122

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
           L L+  G +  A ++D     E+    ++D  ++S  S      ++   R+     +   
Sbjct: 123 LRLLQYGLVEEAAAID---NMEARRGTNNDAGSESGESEDEDEEDFVRRRDAISPPFRRD 179

Query: 121 QFAEA-KLALLQFLKIETTKCGNCKAKNP-RISKPTFGWIHMNGMPHADIRANLIRGCNL 178
           ++++  K  L Q  KI   + G     NP  + K        +G P            + 
Sbjct: 180 KYSKIFKKPLPQKAKIAMAEAG-FHVPNPLLLIKEANDLSKKHGHP------------SQ 226

Query: 179 GETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLF 238
           G   +G  ++ +   S+D    E     G         A+   KGS   PS    Q+   
Sbjct: 227 GSNMNGYPDDDNASVSTDSHGAEQQITMGNA-----VLAQVEVKGSRNKPSEQDAQQ--- 278

Query: 239 SGPLLPS-DVKDIIEKLWENEFELCSFISDMQQQGFGK-KAGHSIFFLGVVLVPPIKFR- 295
               +PS +V   +  L+E E E+   + D + +   + +    +FF+  +LVPP K+R 
Sbjct: 279 ---FMPSPEVYAALRLLFEKEQEVLDLVYDSRLRSKHRPRVTPDMFFIKNILVPPNKYRP 335

Query: 296 LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR---WMNLQQSVNVLF 352
           + + G + ++E  Q    +++++    +      +  ++   V R   + +L Q++  L 
Sbjct: 336 IAANGSNDIIEAQQNTSFTRIIKLCDQINQISRERQGDSTESVTRLRDYRDLLQTIVQLQ 395

Query: 353 DGKNAAGQRDM-----------ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYL 401
           D  N+   RD              GI Q LEKK+GLFR+ +MGKRVN+A RSVISPDP +
Sbjct: 396 DAVNSLIDRDRNPSQGISGMQNEDGIKQRLEKKDGLFRKNMMGKRVNFAARSVISPDPNI 455

Query: 402 AVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKK 461
             NEIG+P  FA +LTYPE VT  N  +L+ ++ING +I+PGA    +++  +       
Sbjct: 456 ETNEIGVPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVENEVGQV------- 508

Query: 462 MRISIGRKLDTSRGAI----VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIM 517
             +S+  K    R AI    + P          K VYRHL  GDVVL+NRQPTLHKPSIM
Sbjct: 509 --VSLKFKSHDERMAIANMLLSPSNFKMKRSRNKKVYRHLTTGDVVLMNRQPTLHKPSIM 566

Query: 518 AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
            H  RVL GE+T+RMHYANC+TYNADFDGDEMN+HFPQ+E++RAEA  + + ++QY+  +
Sbjct: 567 GHRARVLTGERTIRMHYANCNTYNADFDGDEMNLHFPQNELARAEAMQLADTDHQYLSAT 626

Query: 578 NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISR 637
            G PLR LIQDHI      T +DTF ++D++ QLLYS             +P     ++ 
Sbjct: 627 AGKPLRGLIQDHISMGTWFTSRDTFFDKDDYYQLLYS-----------CLRPENSHTVT- 674

Query: 638 SEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGR 673
              ++L + P I +P+ LWTGKQVI+ ++ +IT  R
Sbjct: 675 --DKILLMEPTILRPQKLWTGKQVISTIMMNITPER 708


>gi|327351177|gb|EGE80034.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1699

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 227/489 (46%), Positives = 302/489 (61%), Gaps = 38/489 (7%)

Query: 746  ELSEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFL 802
            E SEE  +I+++ +L+ G++DKAQ   +  GLVH+V E+YG   AG LL  L RL T FL
Sbjct: 780  EGSEEGQVIFRDGELLCGILDKAQLGPSPRGLVHSVHEIYGHVVAGKLLGVLGRLLTKFL 839

Query: 803  QMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG-AEIDPIKLKSEIE 861
             M  FTCG+DDL + K     RK  L  +E+IG+++ L+ + L+    E +  +LK  +E
Sbjct: 840  HMRAFTCGMDDLRLTKKGNEARKRKLEEAEDIGRKIALKYVTLDQTKVEDEEAELKRRLE 899

Query: 862  KAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSK 921
             A+R   DA  A  D    SQ  K  SS + +  L  GL KP   N +  MT+SGAKGS 
Sbjct: 900  DALRD--DAKQAGLDAVFNSQTGK-LSSEITSACLPTGLEKPFPWNQMQAMTSSGAKGSV 956

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            VN   IS +LGQQ LEG+RVP M+SGKTLPSF P++ +  AGGFI  RFLTG++PQEYYF
Sbjct: 957  VNANLISCNLGQQVLEGRRVPVMISGKTLPSFRPFETSLMAGGFISGRFLTGIKPQEYYF 1016

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD-ADGSIVQFCYGEDGVD 1040
            H MAGREGL+DTAVKTSRSGYLQRCLIK +E LK  YD +VR+ ADGS++QF YGEDG++
Sbjct: 1017 HAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDNTVRETADGSVMQFLYGEDGLE 1076

Query: 1041 VHQTSFISKFDALA------ARERGRGRGRNKFCDKGSHTFVMGRNQEMIYK-KCSGQLD 1093
            + + + +  F  LA        E       NK  D  +  +    NQ  I K + +G+LD
Sbjct: 1077 ITKQNHLQDFTFLAQNFWSVVEELNGSDELNKVKDDKAGEW----NQNAIKKLRKTGKLD 1132

Query: 1094 -----------------ASNAYIMELPDALKDNAEKFADKFLSNE--MAKQDFLKLVKHK 1134
                              S ++ M L    K+N +K   +    E  ++K+DF +++  K
Sbjct: 1133 CVDPALSLFPPGSCYGSTSESFAMALRKYQKENPDKLLKEKGKTESRISKKDFTRVMNMK 1192

Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
            ++ S+ +PGE VG++A QS+GEPSTQMTLNTFHLAG    NVTLGIPRL+EI+  AS  I
Sbjct: 1193 YMRSVVEPGESVGIVAGQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASDKI 1252

Query: 1195 KTPVITCPL 1203
             TP +T  L
Sbjct: 1253 LTPTMTGVL 1261



 Score =  359 bits (922), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 248/736 (33%), Positives = 368/736 (50%), Gaps = 100/736 (13%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    + C GH GHI+L V VYN   F+ L+ LL+  C +CH F+ SR +++    K
Sbjct: 63  CTTCRLNSWSCNGHAGHIELPVHVYNVTFFDQLFRLLRAQCAYCHRFRMSRADIKSYTCK 122

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCS-----MVTPRGNY------DNV 109
           L L+  G +  A ++D ++ +      D+   +  S        V  R  Y        +
Sbjct: 123 LRLLQYGLVEEAAAID-NMEARRGTNNDAGSESGESEDEDEEDFVRRRDAYVKRCIQQVL 181

Query: 110 RNLKPQEWTSLQFAEAKLALLQ-------FLKIETT--KCGNCKAKNPRISKPTFGWIHM 160
              K QE+  L  A+   A+ Q       FLK  T   KC +C   +P   +  +  I  
Sbjct: 182 ARSKHQEF--LHGAKNSAAVEQRRNIVRGFLKDITAVKKCASCSGISPPFRRDKYSKIFK 239

Query: 161 NGMP------------HADIRANLIRGCN----------LGETFSGGEEEKDLGASSDVD 198
             +P            H      LI+  N           G   +G  ++ +   S+D  
Sbjct: 240 KPLPQKAKIAMAEAGFHVPNPLLLIKEANDLSKKHGHPSQGSNMNGYPDDDNASVSTDSH 299

Query: 199 APETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPS-DVKDIIEKLWEN 257
             E     G         A+   KGS   PS    Q+       +PS +V   +  L+E 
Sbjct: 300 GAEQQITMGNA-----VLAQVEVKGSRNKPSEQDAQQ------FMPSPEVYAALRLLFEK 348

Query: 258 EFELCSFISDMQQQGFGK-KAGHSIFFLGVVLVPPIKFR-LPSKGGDSVMEHPQTVLLSK 315
           E E+   + D + +   + +    +FF+  +LVPP K+R + + G + ++E  Q    ++
Sbjct: 349 EQEVLDLVYDSRLRSKHRPRVTPDMFFIKNILVPPNKYRPIAANGSNDIIEAQQNTSFTR 408

Query: 316 VLQANIYLANAYVNQPDNAKVIVAR---WMNLQQSVNVLFDGKNAAGQRDM--------- 363
           +++    +      +  ++   V R   + +L Q++  L D  N+   RD          
Sbjct: 409 IIKLCDQINQISRERQGDSTESVTRLRDYRDLLQTIVQLQDAVNSLIDRDRNPSQGISGM 468

Query: 364 --ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPER 421
               GI Q LEKK+GLFR+ +MGKRVN+A RSVISPDP +  NEIG+P  FA +LTYPE 
Sbjct: 469 QNEDGIKQRLEKKDGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEP 528

Query: 422 VTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAI---- 477
           VT  N  +L+ ++ING +I+PGA    +++  +         +S+  K    R AI    
Sbjct: 529 VTNHNYWELKQAVINGPDIYPGAAAVENEVGQV---------VSLKFKSHDERMAIANML 579

Query: 478 VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 537
           + P          K VYRHL  GDVVL+NRQPTLHKPSIM H  RVL GE+T+RMHYANC
Sbjct: 580 LSPSNFKMKRSRNKKVYRHLTTGDVVLMNRQPTLHKPSIMGHRARVLTGERTIRMHYANC 639

Query: 538 STYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
           +TYNADFDGDEMN+HFPQ+E++RAEA  + + ++QY+  + G PLR LIQDHI      T
Sbjct: 640 NTYNADFDGDEMNLHFPQNELARAEAMQLADTDHQYLSATAGKPLRGLIQDHISMGTWFT 699

Query: 598 KKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWT 657
            +DTF ++D++ QLLYS             +P     ++    ++L + P I +P+ LWT
Sbjct: 700 SRDTFFDKDDYYQLLYS-----------CLRPENSHTVT---DKILLMEPTILRPQKLWT 745

Query: 658 GKQVITAVLNHITRGR 673
           GKQVI+ ++ +IT  R
Sbjct: 746 GKQVISTIMMNITPER 761


>gi|261200871|ref|XP_002626836.1| DNA-directed RNA polymerase I subunit [Ajellomyces dermatitidis
            SLH14081]
 gi|239593908|gb|EEQ76489.1| DNA-directed RNA polymerase I subunit [Ajellomyces dermatitidis
            SLH14081]
          Length = 1645

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 227/489 (46%), Positives = 302/489 (61%), Gaps = 38/489 (7%)

Query: 746  ELSEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFL 802
            E SEE  +I+++ +L+ G++DKAQ   +  GLVH+V E+YG   AG LL  L RL T FL
Sbjct: 727  EGSEEGQVIFRDGELLCGILDKAQLGPSPRGLVHSVHEIYGHVVAGKLLGVLGRLLTKFL 786

Query: 803  QMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG-AEIDPIKLKSEIE 861
             M  FTCG+DDL + K     RK  L  +E+IG+++ L+ + L+    E +  +LK  +E
Sbjct: 787  HMRAFTCGMDDLRLTKKGNEARKRKLEEAEDIGRKIALKYVTLDQTKVEDEEAELKRRLE 846

Query: 862  KAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSK 921
             A+R   DA  A  D    SQ  K  SS + +  L  GL KP   N +  MT+SGAKGS 
Sbjct: 847  DALRD--DAKQAGLDAVFNSQTGK-LSSEITSACLPTGLEKPFPWNQMQAMTSSGAKGSV 903

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            VN   IS +LGQQ LEG+RVP M+SGKTLPSF P++ +  AGGFI  RFLTG++PQEYYF
Sbjct: 904  VNANLISCNLGQQVLEGRRVPVMISGKTLPSFRPFETSLMAGGFISGRFLTGIKPQEYYF 963

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD-ADGSIVQFCYGEDGVD 1040
            H MAGREGL+DTAVKTSRSGYLQRCLIK +E LK  YD +VR+ ADGS++QF YGEDG++
Sbjct: 964  HAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDNTVRETADGSVMQFLYGEDGLE 1023

Query: 1041 VHQTSFISKFDALA------ARERGRGRGRNKFCDKGSHTFVMGRNQEMIYK-KCSGQLD 1093
            + + + +  F  LA        E       NK  D  +  +    NQ  I K + +G+LD
Sbjct: 1024 IIKQNHLQDFTFLAQNFWSVVEELNGSDELNKVKDDKAGEW----NQNAIKKLRKTGKLD 1079

Query: 1094 -----------------ASNAYIMELPDALKDNAEKFADKFLSNE--MAKQDFLKLVKHK 1134
                              S ++ M L    K+N +K   +    E  ++K+DF +++  K
Sbjct: 1080 CVDPALSLFPPGSCYGSTSESFAMALRKYQKENPDKLLKEKGKTESRISKKDFTRVMNMK 1139

Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
            ++ S+ +PGE VG++A QS+GEPSTQMTLNTFHLAG    NVTLGIPRL+EI+  AS  I
Sbjct: 1140 YMRSVVEPGESVGIVAGQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASDKI 1199

Query: 1195 KTPVITCPL 1203
             TP +T  L
Sbjct: 1200 LTPTMTGVL 1208



 Score =  358 bits (918), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 238/696 (34%), Positives = 360/696 (51%), Gaps = 73/696 (10%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    + C GH GHI+L V VYN   F+ L+ LL+  C +CH F+ SR +++    K
Sbjct: 63  CTTCRLNSWSCNGHAGHIELPVHVYNVTFFDQLFRLLRAQCAYCHRFRMSRADIKSYTCK 122

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
           L L+  G +  A ++D     E+    ++D  ++S  S      ++   R+     +   
Sbjct: 123 LRLLQYGLVEEAAAID---NMEARRGTNNDAGSESGESEDEDEEDFVRRRDAISPPFRRD 179

Query: 121 QFAEA-KLALLQFLKIETTKCGNCKAKNPRI-SKPTFGWIHMNGMPHADIRANLIRGCNL 178
           ++++  K  L Q  KI   + G     NP +  K        +G P            + 
Sbjct: 180 KYSKIFKKPLPQKAKIAMAEAG-FHVPNPLLLIKEAIDLSKKHGHP------------SQ 226

Query: 179 GETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLF 238
           G   +G  ++ +   S+D    E     G         A+   KGS   PS    Q+   
Sbjct: 227 GSNMNGYPDDDNASVSTDSHGAEQQITMGNA-----VLAQVEVKGSRNKPSEQDAQQ--- 278

Query: 239 SGPLLPS-DVKDIIEKLWENEFELCSFISDMQQQGFGK-KAGHSIFFLGVVLVPPIKFR- 295
               +PS +V   +  L+E E E+   + D + +   + +    +FF+  +LVPP K+R 
Sbjct: 279 ---FMPSPEVYAALRLLFEKEQEVLDLVYDSRPRSKHRPRVTPDMFFIKNILVPPNKYRP 335

Query: 296 LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR---WMNLQQSVNVLF 352
           + + G + ++E  Q    +++++    +      +  ++   V R   + +L Q++  L 
Sbjct: 336 IAANGSNDIIEAQQNTSFTRIIKLCDQINQISRERQGDSTESVTRLRDYRDLLQTIVQLQ 395

Query: 353 DGKNAAGQRDM-----------ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYL 401
           D  N+   RD              GI Q LEKK+GLFR+ +MGKRVN+A RSVISPDP +
Sbjct: 396 DAVNSLIDRDRNPSQGISGMQNEDGIKQRLEKKDGLFRKNMMGKRVNFAARSVISPDPNI 455

Query: 402 AVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKK 461
             NEIG+P  FA +LTYPE VT  N  +L+ ++ING +I+PGA    +++  +       
Sbjct: 456 ETNEIGVPLVFAKKLTYPEPVTNHNYWELKQAVINGPDIYPGAAAVENEVGQV------- 508

Query: 462 MRISIGRKLDTSRGAI----VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIM 517
             +S+  K    R AI    + P          K VYRHL  GDVVL+NRQPTLHKPSIM
Sbjct: 509 --VSLKFKSHDERMAIANMLLSPSNFKMKRSRNKKVYRHLTTGDVVLMNRQPTLHKPSIM 566

Query: 518 AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
            H  RVL GE+T+RMHYANC+TYNADFDGDEMN+HFPQ+E++RAEA  + + ++QY+  +
Sbjct: 567 GHRARVLTGERTIRMHYANCNTYNADFDGDEMNLHFPQNELARAEAMQLADTDHQYLSAT 626

Query: 578 NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISR 637
            G PLR LIQDHI      T +DTF ++D++ QLLYS             +P     ++ 
Sbjct: 627 AGKPLRGLIQDHISMGTWFTSRDTFFDKDDYYQLLYS-----------CLRPENSHTVT- 674

Query: 638 SEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGR 673
              ++L + P I +P+ LWTGKQVI+ ++ +IT  R
Sbjct: 675 --DKILLMEPTILRPQKLWTGKQVISTIMMNITPER 708


>gi|321451320|gb|EFX63013.1| hypothetical protein DAPPUDRAFT_67470 [Daphnia pulex]
          Length = 1391

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 280/910 (30%), Positives = 435/910 (47%), Gaps = 163/910 (17%)

Query: 334  AKVIVARWMNLQQSVNVLFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVN 388
            +++I+  W  LQ    +  + + +    DM     + G+ Q L+ K+G FR  L GKRV+
Sbjct: 307  SQIILEDWYFLQFQCALYINSELSGIPFDMQPKKPSRGLVQRLKGKQGRFRGNLSGKRVD 366

Query: 389  YACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL 448
            ++ R+VISPDP L ++++G+P   A  LTYP  V   N+  +R  + NG +IHPGA    
Sbjct: 367  FSGRTVISPDPNLRIDQVGVPEMVAKILTYPTLVNEANIELMRKLVRNGPDIHPGAIFLK 426

Query: 449  DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQ 508
             K+S + +      R ++ R L   RG +++               RH+ D D+VL NRQ
Sbjct: 427  KKVSKLTISLKHGNRETLARNL--KRGDVIE---------------RHMMDEDIVLFNRQ 469

Query: 509  PTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVN 568
            P+LHK SIM H  ++L   +T R +   C+ YNADFDGDEM +HFPQ E +RAEA  ++ 
Sbjct: 470  PSLHKLSIMCHRAKILP-HRTFRFNECVCTPYNADFDGDEMTLHFPQTEEARAEALILMT 528

Query: 569  ANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGK 628
              +  V P NG+ L + IQD I  A LLT KD F +R + CQ++ S              
Sbjct: 529  NKSNLVTPRNGELLIAAIQDFITGAYLLTLKDAFFDRAKTCQMVAS-------------- 574

Query: 629  PGQRVLISRSEQEVLPLL--PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQ 686
                 +++  E  ++  L  P I KP  LW+GKQ+ + +L      RP          P 
Sbjct: 575  -----MLAGDEVNMVIKLPPPCIQKPAALWSGKQIFSLIL------RPN---------PG 614

Query: 687  DFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKE 746
            D  K       +   KKN+                                      E  
Sbjct: 615  DRIKVNLRTKGKEYSKKNE--------------------------------------EFC 636

Query: 747  LSEEKLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQ 803
            +++  LL+  ++++ G +DK+     +   + + +   YG + A   +  L R+ + ++ 
Sbjct: 637  VNDGFLLVRNSEVLAGCVDKSTIGSGSKINIFYVLLRDYGEDFAIQAMWKLGRVASYYMM 696

Query: 804  MHGFTCGVDDL----LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSE 859
              GF+ G+ D+     +LK+K++   +     +E  + + +       G  ++   L+S+
Sbjct: 697  NRGFSIGIGDVTPGKTLLKEKQKLLDSGFSKCDEYIRLLTIGQSPCLPGCNVEE-SLESK 755

Query: 860  IEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKG 919
            I K + G  D A      ++      H S+S +                  +M+ SG+KG
Sbjct: 756  IHKELSGIRDQAGEVCKKEL------HPSNSPL------------------VMSKSGSKG 791

Query: 920  SKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEY 979
            S +N  Q+ + +GQQ L GKRVP     ++LP F      P A GF+ + F +GL P E 
Sbjct: 792  SYINISQMIACVGQQALNGKRVPNGFEDRSLPHFKRHSKIPAAKGFVSNSFYSGLSPTEL 851

Query: 980  YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            +FH M+GREGLVDTAVKT+   Y+QR LIK LE L   YD +VR++ G I+QF YG DG+
Sbjct: 852  FFHAMSGREGLVDTAVKTAEPMYMQRRLIKFLEDLCCQYDSTVRNSAGEIIQFVYGGDGL 911

Query: 1040 DVHQTSFISKFDALAARERG--RGRGRNKFCD---------KGSHTFVMGRNQEMIYKKC 1088
            D    +++   D     +RG    +  + F D         KG+   +M   +   +KK 
Sbjct: 912  D---PTYMEAKDRPVDFQRGFEHVKAASPFPDEEPLDDIELKGAFDAIM---ETHTFKKL 965

Query: 1089 SGQL--------DASNAYIMELPDALKDNA------EKFADKFLSNEMAKQDFLKLVKHK 1134
               +        ++    I  + D  K++A      EK  ++    ++   +F    K K
Sbjct: 966  GDDIKHELRVFVESQVKRIKSVRDIYKNDARASNPVEKHLERITVGQLV--EFCDFAKEK 1023

Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
            +  +  +PG  VG L +QS+ EP T+MTL  F LAG   MN T G+ RL EI+  ASK I
Sbjct: 1024 YERAKIEPGTAVGALCAQSIAEPCTKMTLKPFQLAGVASMNTTQGVHRLIEIIN-ASKAI 1082

Query: 1195 KTPVITCPLL 1204
             TPVI+  LL
Sbjct: 1083 STPVISTQLL 1092



 Score = 46.2 bits (108), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHH 46
           C TCG+    C GHFG+IDL +PV++   F     +L+ IC  C H
Sbjct: 75  CATCGKGVENCVGHFGYIDLELPVFHVGYFKATINVLQTICKTCSH 120


>gi|331224168|ref|XP_003324756.1| DNA-directed RNA polymerase I subunit A1 [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
 gi|309303746|gb|EFP80337.1| DNA-directed RNA polymerase I subunit A1 [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
          Length = 1887

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/491 (44%), Positives = 298/491 (60%), Gaps = 39/491 (7%)

Query: 749  EEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHG 806
            EE +     DL++GVIDK+Q   + YGLVH+V +LYG++ AG LL  LSRLFT FLQ   
Sbjct: 958  EEHVTFMDGDLIQGVIDKSQIGASPYGLVHSVYDLYGADIAGKLLGILSRLFTKFLQHRA 1017

Query: 807  FTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP---IKLKSEIEKA 863
            FTC +DDL + K  +  R   +  + + G R  L  + L +     P   I L++ +++ 
Sbjct: 1018 FTCRMDDLQLTKRGDEMRSKLISETSQRGIRATLSTIGLSEKEAKTPHGMIDLENRLQEV 1077

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
            +R   D  +A  D   + + N    +++ N+ L  GL KP   N + +MT+SGAKG+ VN
Sbjct: 1078 LRD--DMKMAALDNAYSGE-NSSLQTAINNQCLPSGLAKPFPWNNMQMMTSSGAKGTPVN 1134

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              QIS  LGQQ LEG+RVP MVSGKTLPSF  ++ APRAGGF+  RFLTG+RPQEYYFHC
Sbjct: 1135 ASQISCLLGQQALEGRRVPVMVSGKTLPSFRAFETAPRAGGFVAQRFLTGIRPQEYYFHC 1194

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGL+DTAVKTSRSGYLQRCLIK+LE +++ YD++VR++D SI+QF YG+D +DV +
Sbjct: 1195 MAGREGLIDTAVKTSRSGYLQRCLIKHLEGVRVHYDHTVRNSDSSILQFHYGDDSLDVTK 1254

Query: 1044 TSFISKFD-ALAARER-------GRGRGRNKFCDKGSHT--------------------- 1074
               +++FD +L  R          R  G+        HT                     
Sbjct: 1255 QKHLNQFDFSLMNRSSLITRFNPSRIAGQVDCTTANDHTDRIVKAIKKGVRSLPPPTLSL 1314

Query: 1075 FVMGRNQEMIYKKCSGQLDA-SNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKH 1133
            F   R+   I +K +  ++A  N   +++  + K   + +     S+++   D    + H
Sbjct: 1315 FSPSRHFGSISEKFAVDVEAYKNLNPLQVLKSKKSIRKTWPVYRKSDDLVSMDIFSSLMH 1374

Query: 1134 -KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASK 1192
             +F++ L  PGE VGLLA+Q VGEPSTQMTLNTFH AG G  NVTLGIPRL+EI+  AS 
Sbjct: 1375 VRFMMGLVDPGEAVGLLAAQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASA 1434

Query: 1193 DIKTPVITCPL 1203
            +IKTP +  P+
Sbjct: 1435 NIKTPTMKFPI 1445



 Score =  333 bits (854), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 195/505 (38%), Positives = 279/505 (55%), Gaps = 83/505 (16%)

Query: 220 HQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI-----SDMQQQGFG 274
            ++G GA PS   KQ +     +L  + +  + +L+ NE E+C  +       +Q     
Sbjct: 456 QEQGKGAKPS---KQTERM---MLAQEARAHLNQLFINEPEICGLLYGSRFPALQSHREQ 509

Query: 275 KKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVN----- 329
             A   +FFL VV VPP +FR  +  G   +E PQ  LL+++L   I L +   +     
Sbjct: 510 APASADMFFLEVVPVPPSRFRPAAIMGGMTLESPQNQLLTQILTQTIKLRDLNSDLATTS 569

Query: 330 -----------------QPDNAKV---IVARWMNLQQSVNVLFDGK----NAAGQRDMAS 365
                            Q   AK+   ++   + +Q +VN L D      N    +    
Sbjct: 570 KRIKVEKDLDSSEVEALQTTRAKLYRQVLEACVGMQVAVNSLMDSTKNPTNMGPGKLPPQ 629

Query: 366 GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPW 425
           GI QLLEKK+GLFR  +MGKRVNYA RSVISPD  +  NEIG+PP FA +LT+PE VT  
Sbjct: 630 GIKQLLEKKDGLFRMNMMGKRVNYAARSVISPDINIETNEIGVPPVFAKKLTFPEFVTAH 689

Query: 426 NVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAI----VQPG 481
           N  ++   + NG   HPGA +  D+  TM         IS+ +  +  R A+    +   
Sbjct: 690 NYEQMHRLVCNGPNKHPGAVYIQDEDGTM---------ISLDKMDEEGRRALANTLLHSN 740

Query: 482 KDSDN----------------EFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLK 525
            D++N                    K V+RHL DGD++++NRQPTLHKPS+M H  R+LK
Sbjct: 741 GDAENANSMARPDIGLPSTRTRMRSKRVHRHLDDGDILILNRQPTLHKPSMMCHRARILK 800

Query: 526 GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSL 585
           GEKT+RMHYANC++YNADFDGDEMN+HFPQ  V+++EA  I N +NQY+ P++G+PLR L
Sbjct: 801 GEKTIRMHYANCNSYNADFDGDEMNMHFPQSLVAQSEARMIANNDNQYLVPTSGNPLRGL 860

Query: 586 IQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL 645
           IQDH+VS   +T KDTF  RD++ Q++Y +       G+++G           +  V+ +
Sbjct: 861 IQDHVVSGVWMTNKDTFFTRDDYYQIIYGALRPE---GNYSG-----------QGRVVTV 906

Query: 646 LPAIWKPEPLWTGKQVITAVLNHIT 670
            P IWKP P+WTGKQ+I+ ++ +IT
Sbjct: 907 PPTIWKPVPMWTGKQLISTIMKNIT 931



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 1/81 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q    CPGHFGHI+L VPV++PL     Y LL+  CF+CHHF  S+  + +   K
Sbjct: 142 CWTCHQLNTQCPGHFGHIELNVPVFHPLFMTHAYQLLRSTCFYCHHFLCSQLVILRYTAK 201

Query: 61  LELIIKGDIIAAKSLDLDLPS 81
           L+L+  G  I + ++D D P+
Sbjct: 202 LKLLEHGLPIESDAID-DFPT 221


>gi|170584528|ref|XP_001897051.1| RNA polymerase Rpb1, domain 1 family protein [Brugia malayi]
 gi|158595586|gb|EDP34129.1| RNA polymerase Rpb1, domain 1 family protein [Brugia malayi]
          Length = 1404

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 294/962 (30%), Positives = 453/962 (47%), Gaps = 158/962 (16%)

Query: 289  VPPIKFR--LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQ 346
            VPP   R  + S+      E   T+ LS+++  N  +   +  +    K I   W +LQ 
Sbjct: 254  VPPCCIRPSVVSEVKSGTTEDDITMKLSEIMLINDVI-EKHKKEGSPTKTISETWDHLQV 312

Query: 347  SVNVLFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYL 401
               +  + + +    DM       G  Q L+ K+G FR  L GKRV+++ R+VISPDP L
Sbjct: 313  QCALYINSELSGLPPDMQPKRTTRGFTQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNL 372

Query: 402  AVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKK 461
             ++++G+P Y A  LT+PE V   N+ ++R  I+NG +IHPGA H ++     R   NK+
Sbjct: 373  RIDQVGVPVYVAKILTFPEIVNKANIERMRKLILNGDDIHPGANHIVE-----RATGNKR 427

Query: 462  MRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVV 521
                  R++  ++  +            G ++ RHL D DVVL NRQP+LHK SIM+H  
Sbjct: 428  FLKYGNREITAAQLKV------------GDIIERHLDDNDVVLFNRQPSLHKISIMSHRA 475

Query: 522  RVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDP 581
            +++ G +T R +   C+ YNADFDGDEMN+H PQ   +RAEA  ++   +  + P +G+P
Sbjct: 476  KIVPG-RTFRFNECACTPYNADFDGDEMNLHVPQTYEARAEASLLMGVKSNLITPRSGEP 534

Query: 582  LRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQE 641
            L + IQD I    LLT KD+F  R E  +   +   SSS       K  QR+ I      
Sbjct: 535  LIAAIQDFITGTYLLTHKDSFFPRLEVHRFAAAIIDSSS-------KKQQRIRIPP---- 583

Query: 642  VLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDR 701
                 PAI KP  LWTGKQ++  ++      RP                           
Sbjct: 584  -----PAILKPVELWTGKQLVELII------RPDV------------------------- 607

Query: 702  KKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVR 761
              + K  L+ T K +K  +G ++  V+                    +  ++I  + L+ 
Sbjct: 608  --DSKISLNLTTK-NKSYTGNEEFCVK--------------------DSYVIIRNSVLLC 644

Query: 762  GVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILK 818
            GV+DKA     +   + + +   +G + A   +  L R+  VFL   GF+ G+ D+   K
Sbjct: 645  GVLDKALLGSGSKTNIFYILLRDFGEDAAVDAMWRLGRMAPVFLSNRGFSIGIGDVRPSK 704

Query: 819  DKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMK 878
               +E+ + L    +I    ++E+L+ E   +  P   + E  +A+            +K
Sbjct: 705  TLLKEKSDLLSNGYKICDD-YIESLK-EGRLKAQPGCTEYETLEAL-----------ILK 751

Query: 879  MTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEG 938
              S +  H   + +  L        +  N    M   G+KGS +N  Q+ + +GQQ + G
Sbjct: 752  ELSAIRDHAGQACLRNL--------SRHNAPLTMAVCGSKGSFINISQMIACVGQQAISG 803

Query: 939  KRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTS 998
             R P     ++LP F      P A GF+ + F +GL P E++FH M GREGLVDTAVKT+
Sbjct: 804  HRPPDGFEDRSLPHFERRQKTPAAKGFVENSFYSGLTPTEFFFHTMGGREGLVDTAVKTA 863

Query: 999  RSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD--VHQTSFISKFDALAAR 1056
             +GY+QR L+K LE L ++YD +VR + G +++F +GEDG+D  + +       D     
Sbjct: 864  ETGYMQRRLVKCLEDLCVNYDGTVRSSVGDVIEFTFGEDGLDPALMEAKDGGVVDFKHIL 923

Query: 1057 ERGRGRGRNKFCDKGS-----HTFVMGRNQEMIYKKCSGQLDASNAYIMELPD------A 1105
            E  R    +   D  +        V     E+I K+ +   +   ++I E          
Sbjct: 924  EHTRNTLPHLIEDANTTINELQKVVADTISEIIGKRHAMFREQLESFINEYLKRTNKYYK 983

Query: 1106 LKDNAEKFADKFL-----SNEMAKQDFLK-------------------LVKHKFVLSLAQ 1141
            L  N  K  D ++      N+   Q F +                   L   KF  ++ +
Sbjct: 984  LPKNCTKHMDNWMPSATHCNDCKNQKFFRETEIRSHCLSRAQAVAFIKLCLRKFRRAICE 1043

Query: 1142 PGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITC 1201
            PG  VG +A+ S+GEPSTQMTL TFH AG   MN+T G+PR++EI+    K I TP+IT 
Sbjct: 1044 PGTAVGAVAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIIN-GVKLISTPLITA 1102

Query: 1202 PL 1203
             L
Sbjct: 1103 AL 1104



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC Q    C GHFG+IDL +PV++   F L   +L+ IC FC
Sbjct: 70  CQTCKQNLVDCVGHFGYIDLAIPVFHVGFFRLTIQMLQCICKFC 113


>gi|33416841|gb|AAH55500.1| Polr1a protein, partial [Danio rerio]
          Length = 810

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 234/627 (37%), Positives = 329/627 (52%), Gaps = 113/627 (18%)

Query: 242 LLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKG 300
           L PS  ++ I KLWE E F L    S              +FFL +++VPP ++R  ++ 
Sbjct: 248 LTPSVAREHIIKLWETEGFFLKHLFSGFDMDNSDNGFNPEVFFLELLVVPPCRYRPINRL 307

Query: 301 GDSVMEHPQTVLLSKVLQANIYLANAY--------------------------VNQPDNA 334
           GD +  + QTV +  VL+  + +                              V + D +
Sbjct: 308 GDQMFTNGQTVNMQAVLKDGLIIQKLLTLIADEKTKAIEGTQTGLEQSSEAPKVTEIDQS 367

Query: 335 KV-----------IVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLM 383
            +           + + W++LQ  VN++FD        +   G+ QLLEKKEGLFR+ +M
Sbjct: 368 FLTSIQGVTLTDKLYSTWIHLQSLVNIVFDSDMDKLITEKFPGVRQLLEKKEGLFRKHMM 427

Query: 384 GKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPG 443
           GKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV ++R +++NG  IHPG
Sbjct: 428 GKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEMRQAVLNGPNIHPG 487

Query: 444 ATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGD 501
           AT  +  D   T+    N+  R ++ ++L T             +    K+V RH+++GD
Sbjct: 488 ATMVVNEDGSRTILSSTNQTQREAVAKQLLTP--------STGQHRIPMKIVNRHIKNGD 539

Query: 502 VVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRA 561
           V+L+NRQPTLH+PSI AH  R+L GEK LR+HYANC  YNADFDGDEMN HFPQ E+SRA
Sbjct: 540 VLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELSRA 599

Query: 562 EAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSG 621
           EAY +V+ + QY+ P +G PL  LIQDH+VS   +T +  F  RD++  L+Y       G
Sbjct: 600 EAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFTRDQYTALVY------RG 653

Query: 622 LGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI-TAVLNHITRGRPPFVVER 680
           L    G+            ++LP  P + KP  LWTGKQV+ T +LN I     P  +  
Sbjct: 654 LTDKIGR-----------VKLLP--PTLIKPVLLWTGKQVVSTLLLNVIPENSIPLNLTG 700

Query: 681 GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
             K+P                     GK               KE     PG   E+   
Sbjct: 701 KAKIP---------------------GK------------AWVKESPRPVPGYVPES--- 724

Query: 741 KSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLF 798
                 + E +++I + +L+ GV+DKA +    YGLVH   ELYG  T+G LLS L+RLF
Sbjct: 725 ------MCESQVVIRQGELLMGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLF 778

Query: 799 TVFLQMH-GFTCGVDDLLILKDKERER 824
           T +LQ++ GFT GV+D+L+     ++R
Sbjct: 779 TAYLQLYRGFTLGVEDILVKDGANKQR 805



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 34/54 (62%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREV 54
           C TC Q    CPGHFGHI+L +PVYNPL F+ LY L++  C  CH  K  R  +
Sbjct: 64  CSTCMQDFSSCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSCHTLKCPRAAI 117


>gi|393794932|ref|ZP_10378296.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
            Nitrosoarchaeum limnia BG20]
          Length = 1263

 Score =  378 bits (971), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 299/993 (30%), Positives = 463/993 (46%), Gaps = 176/993 (17%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P+ F ++ ++    LLP  +++   ++ +++  L ++     +  +        F L  +
Sbjct: 164  PTIFVEKTEIGEHRLLPITIRERFSQIIDDDLHLLAYDPVTARPEW--------FILQAL 215

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNL- 344
             VPP+  R PS   ++ +  E   T  +  +++ N  L  +   +     +IV   ++L 
Sbjct: 216  PVPPVTVR-PSIILETGIRSEDDLTHKMVDIIRVNQRLKES--KEAGTPPLIVQDLVDLL 272

Query: 345  QQSVNVLFDGK-NAAGQRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
            Q      FD + +   Q    SG     + Q L+ KEG FR  L GKRV+++ R+VISPD
Sbjct: 273  QYHATTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPD 332

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP 458
            P L ++E+G+P   A++LT PE VT WN+ ++R  +ING    PG  + +        P 
Sbjct: 333  PNLDLSEVGVPEQIAMKLTIPEIVTEWNIERMRKLVINGPNTFPGVNYIVR-------PD 385

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
              K+R+         R  I +  +       G +V RHL +GD+VL NRQP+LH+ SIMA
Sbjct: 386  GVKIRLDFVE----DRSTIAETLEI------GYLVERHLANGDIVLFNRQPSLHQMSIMA 435

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H VRVL G KT R+H + C  YNADFDGDEMN+H PQ E +RAEA  ++   +Q + P  
Sbjct: 436  HYVRVLPG-KTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAILLMRVQDQLISPRY 494

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            G P+   ++D +  A LLTK DT L   EF       G +         KPG +      
Sbjct: 495  GGPIIGALRDFVTGAYLLTKDDTLLTPQEFYNYAMLGGYNEK-----FPKPGSK------ 543

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
                        K  P++TGKQ+ +                    LP+DF          
Sbjct: 544  -----------NKDGPMYTGKQLFSLF------------------LPKDF---------- 564

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND 758
                         T+K  K   G +K+VV                          I   +
Sbjct: 565  ---------NYVITSKWSKGTKGAQKDVV--------------------------IKNGE 589

Query: 759  LVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
            L+ GVIDK+         ++H + + YG+  A   L+++  +   ++  +GF+ G  DL 
Sbjct: 590  LISGVIDKSSIGAEEPESVLHRIAKDYGNTKAKNFLNSILIMVKQYITHYGFSYGYADLE 649

Query: 816  ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYF 875
            +    E+E++  L   +E    +     + E G     +KL   ++       +A  AY 
Sbjct: 650  V---PEKEKQQILDDIQETYGIISDLTSQYEKGT----LKLTRGMKPE-----EALEAYI 697

Query: 876  DMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQE 935
              ++    +K  +    ++ L +        N   +M T+GA+GS +N  Q++  LGQQ 
Sbjct: 698  VNELGKARDK--AGMTADQSLDQS-------NAGRIMATTGARGSSLNIGQMAGALGQQS 748

Query: 936  LEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAV 995
              G R+    + + LP +   D  P A GF+   +  GL   E++FH M GREGLVDTAV
Sbjct: 749  RRGSRLHAGYNNRALPHYQEHDNNPDAHGFVKSNYREGLSALEFFFHAMGGREGLVDTAV 808

Query: 996  KTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAA 1055
            +T +SGY+QR LI  LE +++ YD +VRD  G I+QF YGEDG+DV            A 
Sbjct: 809  RTQQSGYMQRRLINALEHIRLEYDGTVRDPHGHIIQFLYGEDGIDV------------AK 856

Query: 1056 RERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQ--LDASNAYIMELPDALKDNAEKF 1113
             + G     N+  +  S T V         KK + +   D +  Y       LK   +  
Sbjct: 857  SDHGEAFNINRLIE--SQTIVDSG------KKATKEEITDLAKKYTKTFNPRLK---QLV 905

Query: 1114 ADKFLSNEMAKQDFLKLVKHKFVL---SLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
             D  L ++++K+    + K    L   +  +PG+ VG++ +QS+GEP TQMTL TFH AG
Sbjct: 906  TDGLLDSKLSKEGAEIVCKKGLSLYNKAKVEPGQAVGIITAQSIGEPGTQMTLRTFHFAG 965

Query: 1171 RGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
              E NVTLG+PRL E++    K + TP +   L
Sbjct: 966  IAERNVTLGLPRLIELVDARKKPV-TPTMDIYL 997



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEK 56
           C TCG     CPGHFGHI+L  P+ +    + +Y LL+  C  C   K  + ++++
Sbjct: 61  CLTCGNTAARCPGHFGHIELAEPILHIAFIDNIYKLLQSTCRSCARLKVPQEDLDE 116


>gi|395508814|ref|XP_003758704.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Sarcophilus
           harrisii]
          Length = 1708

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 245/701 (34%), Positives = 360/701 (51%), Gaps = 125/701 (17%)

Query: 240 GPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS 298
           G L PS  ++ +  LWENE F L    S +++ G   K   +IFFL +V+VPP ++R  +
Sbjct: 220 GYLTPSTAREHVLALWENEGFFLKYLFSGVEEPGMESKFNPNIFFLDLVVVPPSRYRPVN 279

Query: 299 KGGDSVMEHPQTVLLSKVLQANIYLAN--AYVNQ--------------------PDNAKV 336
           + GD +  + QTV L  VL+  + +    A + Q                    P+ A+ 
Sbjct: 280 RLGDQMFTNGQTVNLQAVLKDVVLIRKLLALMAQEQALPSEGIGATEKEIQNGSPEEAES 339

Query: 337 IV--------------------ARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEG 376
            V                      W+ LQ  VN++FD        +   GI Q+LEKKEG
Sbjct: 340 SVPMDRSFLATIPGQSLTEKLYGMWIRLQSHVNIVFDSDMDKLMMEKYPGIRQILEKKEG 399

Query: 377 LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
           LFR+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++IN
Sbjct: 400 LFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVIN 459

Query: 437 GAEIHPGATHYLDK------LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
           G  +HPGA+  +++      LST  L      R ++ ++L T       P          
Sbjct: 460 GPNVHPGASMVINEDGSRTALSTTDL----TQREAVAKQLLT-------PAPGGPKPQGA 508

Query: 491 KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
           K+V RH+++GDV+L+NRQPTLH+PSI AH  R+L  EK LR+HYANC  YNADFDGDEMN
Sbjct: 509 KVVCRHVKNGDVLLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMN 568

Query: 551 VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            HFPQ E+ RAEA  +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +
Sbjct: 569 AHFPQSELGRAEACVLACTDEQYLVPKDGQPLAGLIQDHMVSGARMTARGCFFTREQYME 628

Query: 611 LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
           L+Y       GL    G+            ++ P  PAI KP  LWTGKQV++ +L +I 
Sbjct: 629 LVY------RGLTDRVGR-----------VKIFP--PAILKPCALWTGKQVVSTLLVNI- 668

Query: 671 RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                        +P++                  K K+S    +        K+     
Sbjct: 669 -------------IPENHIPLNLIG----------KAKISGKAWI--------KQSTLAA 697

Query: 731 PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAG 788
           PG   +A         + E +++I + +L+ GV+DKA +    YGLVH   E+YG  T+G
Sbjct: 698 PGGALDA---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEVYGGETSG 748

Query: 789 TLLSALSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED 847
            +L+ L+RLFT +LQ++ GFT  V+D+L+    + +R   +  S   G R    A  L D
Sbjct: 749 QVLTCLARLFTAYLQLYKGFTLDVEDILVRPRADAKRLVVIEESSHCGSRAVRAAFNLPD 808

Query: 848 GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTS 888
            A  + ++ K +     +   D  +   D+K   ++N +++
Sbjct: 809 TASAEDMQTKWQDAHLSKDQRD--LNMVDLKFKEEVNHYSN 847



 Score =  112 bits (281), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 55/80 (68%), Positives = 67/80 (83%), Gaps = 1/80 (1%)

Query: 1126 DFLKLVKH-KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
            D LK + H K+  +L  PGE VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+
Sbjct: 1184 DRLKTLLHLKWQRALCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR 1243

Query: 1185 EILTIASKDIKTPVITCPLL 1204
            EIL +AS +IKTP+++ P+L
Sbjct: 1244 EILMVASSNIKTPMMSVPVL 1263



 Score = 79.7 bits (195), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/46 (73%), Positives = 41/46 (89%)

Query: 977  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSV 1022
            +E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD + 
Sbjct: 995  KEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTA 1040



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 48/100 (48%), Gaps = 7/100 (7%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q    CPGH GHIDL + VYNPLLF+ LY L++  C  CH     R  V     +
Sbjct: 64  CSTCVQDFGSCPGHLGHIDLPLVVYNPLLFDKLYLLIRGSCLNCHLLTCPRPVVHLLYCQ 123

Query: 61  LELIIKGDIIAAKSLDLDLPS-ESSNPEDSDVSNKSSCSM 99
           L ++  G +     L+  L   +  NP      N S C M
Sbjct: 124 LRVLEVGALQGVYELESTLNRFQDENP------NASVCEM 157


>gi|329765754|ref|ZP_08257323.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosoarchaeum
            limnia SFB1]
 gi|329137820|gb|EGG42087.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosoarchaeum
            limnia SFB1]
          Length = 1263

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 299/993 (30%), Positives = 463/993 (46%), Gaps = 176/993 (17%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P+ F ++ ++    LLP  +++   ++ +++  L ++     +  +        F L  +
Sbjct: 164  PTIFVEKTEIGEHRLLPITIRERFSQIIDDDLHLLAYDPVTARPEW--------FILQAL 215

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNL- 344
             VPP+  R PS   ++ +  E   T  +  +++ N  L  +   +     +IV   ++L 
Sbjct: 216  PVPPVTVR-PSIILETGIRSEDDLTHKMVDIIRVNQRLKES--KEAGTPPLIVQDLVDLL 272

Query: 345  QQSVNVLFDGK-NAAGQRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
            Q      FD + +   Q    SG     + Q L+ KEG FR  L GKRV+++ R+VISPD
Sbjct: 273  QYHATTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPD 332

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP 458
            P L ++E+G+P   A++LT PE VT WN+ ++R  +ING    PG  + +        P 
Sbjct: 333  PNLDLSEVGVPEQIAMKLTIPEIVTEWNIERMRTLVINGPNKFPGVNYIVR-------PD 385

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
              K+R+         R  I +  +       G +V RHL +GD+VL NRQP+LH+ SIMA
Sbjct: 386  GVKIRLDFVE----DRSTIAETLEI------GYLVERHLANGDIVLFNRQPSLHQMSIMA 435

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H VRVL G KT R+H + C  YNADFDGDEMN+H PQ E +RAEA  ++   +Q + P  
Sbjct: 436  HYVRVLPG-KTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAILLMRVQDQLISPRY 494

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            G P+   ++D +  A LLTK DT L   EF       G +         KPG +      
Sbjct: 495  GGPIIGALRDFVTGAYLLTKDDTLLTPQEFYNYAMLGGYNEK-----FPKPGSK------ 543

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
                        K  P++TGKQ+ +                    LP+DF          
Sbjct: 544  -----------NKDGPMYTGKQLFSLF------------------LPKDF---------- 564

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND 758
                         T+K  K   G +K+VV                          I   +
Sbjct: 565  ---------NYVITSKWSKGTKGAQKDVV--------------------------IKNGE 589

Query: 759  LVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
            L+ GVIDK+         ++H + + YG+  A   L+++  +   ++  +GF+ G  DL 
Sbjct: 590  LISGVIDKSSIGAEEPESVLHRIAKDYGNTKAKNFLNSILIMVKQYITHYGFSYGYADLE 649

Query: 816  ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYF 875
            +    E+E++  L   +E    +     + E G     +KL   ++       +A  AY 
Sbjct: 650  V---PEKEKQQILDDIQETYGVISDLTSQYEKGT----LKLTRGMKPE-----EALEAYI 697

Query: 876  DMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQE 935
              ++    +K  +    ++ L +        N   +M T+GA+GS +N  Q++  LGQQ 
Sbjct: 698  VNELGKARDK--AGMTADQSLDQS-------NAGRIMATTGARGSALNIGQMAGALGQQS 748

Query: 936  LEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAV 995
              G R+    + + LP +   D  P A GF+   +  GL   E++FH M GREGLVDTAV
Sbjct: 749  RRGSRLHAGYNNRALPHYQEHDNNPDAHGFVKSNYREGLSALEFFFHAMGGREGLVDTAV 808

Query: 996  KTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAA 1055
            +T +SGY+QR LI  LE +++ YD +VRD  G I+QF YGEDG+DV            A 
Sbjct: 809  RTQQSGYMQRRLINALEHIRLEYDGTVRDPHGHIIQFLYGEDGIDV------------AK 856

Query: 1056 RERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQ--LDASNAYIMELPDALKDNAEKF 1113
             + G     N+  +  S T V         KK + +   D +  Y       LK   +  
Sbjct: 857  SDHGEAFNINRLIE--SQTIVDSG------KKATKEEITDLAKKYTKTFNPRLK---QLV 905

Query: 1114 ADKFLSNEMAKQDFLKLVKHKFVL---SLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
             D  L ++++K+    + K    L   +  +PG+ VG++ +QS+GEP TQMTL TFH AG
Sbjct: 906  TDGLLDSKLSKEGAEIVCKKGLSLYNKAKVEPGQAVGIITAQSIGEPGTQMTLRTFHFAG 965

Query: 1171 RGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
              E NVTLG+PRL E++    K + TP +   L
Sbjct: 966  IAERNVTLGLPRLIELVDARKKPV-TPTMDIYL 997



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEK 56
           C TCG     CPGHFGHI+L  P+ +    + +Y LL+  C  C   K  + ++++
Sbjct: 61  CLTCGNTAARCPGHFGHIELAEPILHIAFIDNIYKLLQSTCRSCARLKVPQEDLDE 116


>gi|302914119|ref|XP_003051073.1| hypothetical protein NECHADRAFT_41824 [Nectria haematococca mpVI
            77-13-4]
 gi|256732011|gb|EEU45360.1| hypothetical protein NECHADRAFT_41824 [Nectria haematococca mpVI
            77-13-4]
          Length = 1449

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 296/1005 (29%), Positives = 464/1005 (46%), Gaps = 172/1005 (17%)

Query: 257  NEFELCSFISDMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVMEHPQTVLLSK 315
            N F++ S  +D +  G     G    F+   L  PP+  R      ++  E   T  L+ 
Sbjct: 239  NLFKMIS-PTDCELLGLDPAEGRPEMFIWQFLPAPPVCIRPSVAQDNASNEDDITTKLAD 297

Query: 316  VLQANIYLANAYVNQPDNAKVIVARWMNLQQS----VNVLFDGKNAAGQRDMASGICQLL 371
            ++  +  + +A + +    + I+ +W  LQ      VN    G    G      G CQ L
Sbjct: 298  IVWVSGMIRSA-LQKGSPVQTIMEQWEYLQTQIAMYVNSDVPGLQQPGFGKATRGFCQRL 356

Query: 372  EKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLR 431
            + K+G FR  L GKRV+++ R+VISPDP L ++++ +P   A  LTYPERV   N+ KLR
Sbjct: 357  KGKQGRFRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPELVAKNLTYPERVQRHNIEKLR 416

Query: 432  DSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGK 491
              I NG ++ PGA   + +           + +    + +TSR          D ++ G 
Sbjct: 417  QCIKNGVDVWPGAQRVVKQDDG-----GYSINLKFANRDNTSR----------DLKY-GD 460

Query: 492  MVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNV 551
            +V RHL+D D+VL NRQP+LHK SIM+H+ +V +  +T R++   C  YNADFDGDEMN+
Sbjct: 461  VVERHLEDNDIVLFNRQPSLHKLSIMSHLAKV-RPWRTFRLNECVCGPYNADFDGDEMNL 519

Query: 552  HFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL 611
            H PQ E +RAEA N++   +    P NG+P+ +  QD I +A LL+ KD F +R  F  L
Sbjct: 520  HVPQTEEARAEAINLMGIKHNLATPKNGEPVIAATQDFITAAFLLSSKDRFFDRKTFTYL 579

Query: 612  LYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITR 671
                                 ++  ++  ++ P  PAI  P+ LWTGKQ+ + ++     
Sbjct: 580  CM------------------HMMDGKTHLDMPP--PAIIAPQALWTGKQLFSMLMR---- 615

Query: 672  GRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKP 731
                         P    K + N D                          K    + +P
Sbjct: 616  -------------PNKDSKVKVNLD-------------------------AKCRAYKARP 637

Query: 732  GEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAG 788
            G+  + + N        +  L++  ++++ G +DK+         + + +   +G + A 
Sbjct: 638  GQCPDMDPN--------DGWLVVRNSEVMCGRMDKSTVGSGKKDSIFYVILRDFGPDEAV 689

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
              ++ L++L    L   GF+ GV D+   +    E++          K V +   + +D 
Sbjct: 690  IAMNRLAKLCARQLTNRGFSIGVGDVFPTQSLNDEKE----------KLVAVAYKQCDD- 738

Query: 849  AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNW 908
              I+  K   ++EKA     +  +      + S++ +   S  ++ L        +  N 
Sbjct: 739  -LIETFK-AGKLEKAAGCNQEQTLENSMSGILSKVRQQAGSYCVDTL--------SRNNA 788

Query: 909  ISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIID 968
              +M  SG+KGS +N  Q+ + +GQQ + G RV      +TLP FH     P + GF+ +
Sbjct: 789  PLIMAKSGSKGSDINVAQMVALVGQQIIGGSRVADGFQDRTLPHFHKNARQPPSKGFVKN 848

Query: 969  RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGS 1028
             F TGL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR + G 
Sbjct: 849  SFYTGLFPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSGGG 908

Query: 1029 IVQFCYGEDGVD-------VHQTSFISKFDALAARERGRGRGR------NKFCDKGSHT- 1074
            IVQF +G D +D            F+  +    +  R              FCD    T 
Sbjct: 909  IVQFQFGADKLDPVDMEGSAEPVHFLRTWTHAESLTRDNSEASMTPEEIRSFCDTVLETE 968

Query: 1075 ---FV---MGRNQEMIYKKCS-----------GQLDASNAYIMELPDAL----------- 1106
               +V   +  N+ + Y   S           G L A   ++  L   L           
Sbjct: 969  RKRYVRRGLLHNEVLDYGDTSDYGIDEHEGARGFLKAIETHVEGLASKLERVRKLAGFEG 1028

Query: 1107 --------KDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPS 1158
                    +D+A++ A   LS     + F+K+   K+  +  +PG  VG + + S+GEP 
Sbjct: 1029 DVMVRATAQDHADRTAKVTLST---LRLFIKMCLDKYKKAHVEPGHAVGAVGAHSIGEPG 1085

Query: 1159 TQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            TQMTL TFH AG   M++T G+PR++EI+  ASK I TPVITCPL
Sbjct: 1086 TQMTLKTFHFAGVAGMSITQGVPRIKEIIN-ASKTISTPVITCPL 1129


>gi|342886359|gb|EGU86224.1| hypothetical protein FOXB_03263 [Fusarium oxysporum Fo5176]
          Length = 1404

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 303/1011 (29%), Positives = 470/1011 (46%), Gaps = 184/1011 (18%)

Query: 257  NEFELCSFISDMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVM-EHPQTVLLS 314
            N F++ S  +D +  G     G    F+   L  PP+  R PS   D+   E   T  L+
Sbjct: 193  NLFKMIS-PTDCELLGLDPAEGRPEMFIWQFLPAPPVCIR-PSVAQDNASNEDDITTKLA 250

Query: 315  KVLQANIYLANAYVNQPDNAKVIVARWMNLQQS----VNVLFDGKNAAGQRDMASGICQL 370
             ++  +  + +A + +    + I+ +W  LQ      VN    G    G      G CQ 
Sbjct: 251  DIVWVSGMIRSA-LQKGSPVQTIMEQWEYLQTQIAMYVNSDVPGLQQPGFGKATRGFCQR 309

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ K+G FR  L GKRV+++ R+VISPDP L ++++ +P   A  LTYPERV   N+ KL
Sbjct: 310  LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPQLVAKNLTYPERVQRHNLEKL 369

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE- 489
            R  + NG +I PGA                       R + +  G  +Q  K  + E+  
Sbjct: 370  RQCVKNGPDIWPGAQ----------------------RVIKSDEGGYLQSLKFGNREYIA 407

Query: 490  -----GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADF 544
                 G +V RHL+D D+VL NRQP+LHK SIM+H+ +V +  +T R++   C  YNADF
Sbjct: 408  RDLKFGDIVERHLEDNDIVLFNRQPSLHKLSIMSHLAKV-RPWRTFRLNECVCGPYNADF 466

Query: 545  DGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLN 604
            DGDEMN+H PQ E +RAEA N++   +    P NG+P+ +  QD I +A LL+ KD F +
Sbjct: 467  DGDEMNLHVPQTEEARAEAINLMGIKHNLATPKNGEPVIAATQDFITAAFLLSSKDRFFD 526

Query: 605  RDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITA 664
            R  F  L                     ++  ++  ++ P  PAI  P+ LWTGKQ+ + 
Sbjct: 527  RKTFTYLCM------------------HMMDGKTHLDMPP--PAIIAPQSLWTGKQLFSM 566

Query: 665  VLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKK 724
            ++      RP                     +K S  K N   K                
Sbjct: 567  LM------RP---------------------NKDSPVKVNLDAKC--------------- 584

Query: 725  EVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFA---DYGLVHTVQEL 781
               + +PG+  + + N        +  L++  ++++ G +DK+         + + +   
Sbjct: 585  RAYKARPGQCPDMDPN--------DGWLVVRNSEVMCGRMDKSTVGTGKKDSIFYVILRD 636

Query: 782  YGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILK--DKERERKNHLHGSEEIGKRVH 839
            +G + A   ++ L++L    L   GF+ GV D+   +  +KE+E+   +   +       
Sbjct: 637  FGPDEAVIAMNRLAKLCARQLTNRGFSIGVGDVFPTESLNKEKEKLVAVAYKQCDDLIET 696

Query: 840  LEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEG 899
             +A +LE  A  +    +  +E +M G            + S++ +   S  ++ L    
Sbjct: 697  FKAGKLEKAAGCNQ---EQTLENSMSG------------ILSKVRQQAGSYCVDTL---- 737

Query: 900  LLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWA 959
                +  N   +M  SG+KGS +N  Q+ + +GQQ + G RV      +TLP FH     
Sbjct: 738  ----SRNNAPLIMAKSGSKGSDINVAQMVALVGQQIIGGSRVADGFQDRTLPHFHKNARQ 793

Query: 960  PRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYD 1019
            P + GF+ + F TGL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD
Sbjct: 794  PPSKGFVKNSFYTGLFPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYD 853

Query: 1020 YSVRDADGSIVQFCYGEDGVD----------VHQTSFISKFDALAARERGRGRGRNK--- 1066
             +VR + G IVQF +G D +D          VH     +  ++L            +   
Sbjct: 854  DTVRTSGGGIVQFQFGADKLDPVDMEGSAEPVHFQRTWTHAESLTVDNSETSMTPEEIRS 913

Query: 1067 FCDKGSHT----FV---MGRNQEMIYKKCS-----------GQLDASNAYIMELPDAL-- 1106
            FCDK   T    +V   +  N+ + Y   S           G L A   ++  L   L  
Sbjct: 914  FCDKVLETERRRYVRRGLLHNEILDYGDTSDYGIDEHEGARGFLKAIERHVEGLASKLET 973

Query: 1107 -------------KDNAEKFADKFLSNEMAK-QDFLKLVKHKFVLSLAQPGEPVGLLASQ 1152
                         +  A+  AD+     ++  + F+K+   K+  +  +PG  VG + + 
Sbjct: 974  VRKLAGFKGGAMVRSTAQDHADRTAKVTLSTLRLFIKMCLEKYKKAHVEPGHAVGAVGAH 1033

Query: 1153 SVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            S+GEP TQMTL TFH AG   M++T G+PR++EI+  ASK I TPVITCPL
Sbjct: 1034 SIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN-ASKAISTPVITCPL 1083


>gi|118576747|ref|YP_876490.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
            [Cenarchaeum symbiosum A]
 gi|118195268|gb|ABK78186.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
            [Cenarchaeum symbiosum A]
          Length = 1260

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 304/999 (30%), Positives = 461/999 (46%), Gaps = 191/999 (19%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P+ F ++ ++    LLP  +++   ++   +  L  +     +  +        F L  +
Sbjct: 164  PTIFIEKTEIGENRLLPITIREKFSQITNEDLVLLGYDPATARPEW--------FILQAL 215

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNL- 344
             VPP+  R PS   ++ +  E   T  +  +++ N  L  +   +     +IV   ++L 
Sbjct: 216  PVPPVTVR-PSIILETGIRSEDDLTHKMVDIIRVNQRLKES--KEAGTPPLIVQDLVDLL 272

Query: 345  QQSVNVLFDGK-NAAGQRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
            Q      FD + +   Q    SG     + Q L+ KEG FR  L GKRV+++ R+VISPD
Sbjct: 273  QYHATTYFDNEISGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPD 332

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP 458
            P L ++E+G+P   A++LT PE VT WN+ ++++ ++NG + +PG  + +        P 
Sbjct: 333  PNLDLSEVGVPESVAMKLTIPEIVTEWNIARMKELVVNGPDHYPGVNYIVR-------PD 385

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
              K+R+       T           +D    G ++ RHL DGD+V+ NRQP+LH+ SIMA
Sbjct: 386  GVKIRLDFVEDRSTI----------ADTLEMGYLIERHLLDGDIVMFNRQPSLHQMSIMA 435

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H VRVL G KT R+H + C  YNADFDGDEMN+H PQ E +RAEA  ++   +Q + P  
Sbjct: 436  HHVRVLPG-KTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAMLLMRVQDQLISPRY 494

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            G P+   ++D I  + LLTK DT L R+EF  L        + LG + G           
Sbjct: 495  GGPIIGGLRDFITGSYLLTKDDTTLTREEFTNL--------AMLGDYGGA---------- 536

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
                   LP       L+TGKQ+ +  L                  P+DF          
Sbjct: 537  -------LPKPGAKGQLFTGKQLFSLFL------------------PKDF---------- 561

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND 758
                         T+K  K   G  K+VV                          I   +
Sbjct: 562  ---------NYIITSKWSKGTKGTPKDVV--------------------------IKNGE 586

Query: 759  LVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
            L+ GVIDK+         ++H + + YG+  A   L+++  +   F+  +GF+ G  DL 
Sbjct: 587  LISGVIDKSSIGAEEPESVLHRIAKDYGNAPAKKFLNSVLIIAKQFITHYGFSYGYADLE 646

Query: 816  ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGG-----GDA 870
            +    E+ RK       EI   +         GA  D  K+   I  A +GG     G +
Sbjct: 647  L---PEKARK-------EIFDDI---------GASYD--KVYGYIADAKKGGLRLTRGLS 685

Query: 871  AVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQIS 928
                 +  + S+L+  + T+  + ++            N   +M ++GA+GS +N  Q++
Sbjct: 686  PDEALEAYIVSELSRARDTAGGIADQSFDH-------TNAGKIMASTGARGSSLNIGQMA 738

Query: 929  SHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGRE 988
              LGQQ   G+R+ +  + + LP F   D +P A GF+   +  GL   E++FH MAGRE
Sbjct: 739  GSLGQQSRRGQRLLKGYNNRALPHFRENDDSPDAHGFVKSNYRDGLSALEFFFHAMAGRE 798

Query: 989  GLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS 1048
            GLVDTAV+T +SGY+QR LI  LE +++ YD +VRD  G I+QF YGEDG+DV ++    
Sbjct: 799  GLVDTAVRTQQSGYMQRRLINALEHIRLEYDNTVRDPHGHIIQFLYGEDGIDVAKSDHGE 858

Query: 1049 KFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDA--- 1105
             F+     E           D G            I KK +   +     I+    A   
Sbjct: 859  AFNVHRLIE------SQMIVDTGKKA--TAPEIAEIAKKYAKTFNPRMKEIVTGALAECG 910

Query: 1106 -LKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLN 1164
              K+ AEK   K L       D     K        +PG+ VG++ +QS+GEP TQMTL 
Sbjct: 911  LSKEGAEKVGKKGL-------DLYNKAK-------VEPGQAVGIVTAQSIGEPGTQMTLR 956

Query: 1165 TFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            TFH AG  E NVTLG+PRL E++    K + TP +   L
Sbjct: 957  TFHFAGIKERNVTLGLPRLIELVDARKKPV-TPTMDIHL 994



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVE 55
           C TCG     CPGHFGHI+L  P+ +    + ++ LL  +C  C   K  + E++
Sbjct: 61  CLTCGNTAARCPGHFGHIELAEPILHIAFIDNIHKLLLGMCRSCSRLKVPQEELD 115


>gi|322705032|gb|EFY96621.1| DNA-directed RNA polymerase I subunit RPA1 [Metarhizium anisopliae
           ARSEF 23]
          Length = 1659

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 250/703 (35%), Positives = 370/703 (52%), Gaps = 76/703 (10%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC      CPGH GHI L  PVY+P+  +  Y LL+  C +C  F+   +++ K + K
Sbjct: 62  CATCSLISSSCPGHPGHIQLPAPVYHPVFMDQAYHLLRATCVYCRGFRLPPKDLHKYMCK 121

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDS--------DVSNKSSCSMVTPRGNYDNV--- 109
           L L+  G I  A  +D    ++SS  +++        D  N S  ++   R  Y  V   
Sbjct: 122 LRLLQHGLIREAHVIDALGETDSSEMDEALGLGESEADEENSSFDNVTRKREQYVQVCLR 181

Query: 110 ----RNLKPQEWTSLQFAEAKLALLQFLKIETTK---CGNCKAKNPRISKPTFGWIHMNG 162
               R    ++      A+A+  +++    E  K   C +C   +P   K  +  I    
Sbjct: 182 SSALRRGDTRKGKHEGMAQARREVIKQFLAEINKKRQCSSCDGISPPYRKDRYVKIFEKA 241

Query: 163 MPHAD----IRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAAR 218
           +   +    ++ NL R   +   +     +  L   +DV+  E  +   +    QD    
Sbjct: 242 LSPKEQVKMMKKNLSRKDAMTRHY-----DAKLDPKADVEISEPDAIVESL-SDQD---E 292

Query: 219 RHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGF-GKKA 277
                 GA    +          + P +++  + +L++ E +L   + + + +       
Sbjct: 293 EEPDIDGASTQRY----------ISPMEIRARLSELFKKEQDLVFLLYNSKPRTRRSPDV 342

Query: 278 GHSIFFLGVVLVPPIKFRLPSKGGDS-VMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
              +FF+  +LVPP ++R  ++ GDS V E  Q  L   +L+    +A  Y    +   V
Sbjct: 343 TPDMFFITTILVPPNRYRPEARMGDSQVTEAEQNSLYKSILRGCSKIARVYSVLKNEEHV 402

Query: 337 IVAR----WMNLQQSVNVLFD-GKN----AAGQRDMASGICQLLEKKEGLFRQKLMGKRV 387
            + +    W  LQ+ VN L D  KN    AA +R+   GI Q LEKKEGLFR+ +MGKRV
Sbjct: 403 DITQLHQAWTELQEGVNALIDKSKNPVQGAAAKRN-EDGIKQKLEKKEGLFRKNMMGKRV 461

Query: 388 NYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY 447
           NYA RSVISPDP +  NEIG+PP FA +LT+PE VT  N   ++ ++INGA   PGA   
Sbjct: 462 NYAARSVISPDPNIETNEIGVPPVFAQKLTFPEPVTSHNFRDMQQAVINGANTWPGAVAI 521

Query: 448 LDKLSTMRLPPNKKM--RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLV 505
            ++   +++  NK +  RIS+  +L       + P   +    + K VYRH+ +GDVVL+
Sbjct: 522 ENENGQVQMLKNKSVDERISLANQL-------LAPTNPAAVRLKNKKVYRHITNGDVVLM 574

Query: 506 NRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYN 565
           NRQPTLHKPSIM H VRVL GEKT+RMHYANC+TYNADFDGDEMN+HFPQ+EV+RAEA +
Sbjct: 575 NRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPQNEVARAEALH 634

Query: 566 IVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSF 625
           I + ++QY+  + G PLR LIQDHI  +  L  +DTF +R ++  L+YS+    SG   F
Sbjct: 635 IADTDHQYLSGTQGKPLRGLIQDHISISIALCTRDTFFSRGDYHSLVYSAIRPESG-HIF 693

Query: 626 TGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
               G+R+       +++P  PAI KP P WTGKQVI+ +L +
Sbjct: 694 ----GERI-------QLVP--PAIIKPVPRWTGKQVISTILKN 723



 Score =  354 bits (909), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 209/494 (42%), Positives = 278/494 (56%), Gaps = 56/494 (11%)

Query: 749  EEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHG 806
            E  +LI   + V G++DK+Q      GL+H + E++G   AG LLSA  RL T +L M  
Sbjct: 751  EGTVLIQDGEFVTGILDKSQIGQSSGGLIHAIHEIHGPAIAGKLLSAFGRLLTRYLNMRA 810

Query: 807  FTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRG 866
            F+CGVDDL +    E  R+  L     +G  V    + L+D ++     L   +E+ +R 
Sbjct: 811  FSCGVDDLKLTAKGEEARRQELQAINRVGLEVASNYVSLKDVSDSQNPVLLERLEEVLRD 870

Query: 867  GGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQ 926
              D  +   D+ M +   K  +  V    +  GL KP  +N +  MTTSGAKGS+VN   
Sbjct: 871  --DTKLEGLDLLM-NHTTKDITDKVQKVCIPNGLEKPFPRNQMQAMTTSGAKGSRVNASL 927

Query: 927  ISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAG 986
            IS +LGQQ LE +RVP MVSGK+LP F P++    A G+I  RFLTG+RPQEYYFH MAG
Sbjct: 928  ISCNLGQQVLESRRVPIMVSGKSLPCFKPFETNITANGYIGSRFLTGIRPQEYYFHHMAG 987

Query: 987  REGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            REGL+DTAVKTSRSGYLQRC+IK LE L + YD +VRDADGSI+QF YGEDG+DV + ++
Sbjct: 988  REGLIDTAVKTSRSGYLQRCVIKGLEGLMVGYDTTVRDADGSIIQFLYGEDGLDVTKQTY 1047

Query: 1047 ISKF------------------------------------DALAARERGRGRGRNKFC-- 1068
            +  F                                     A+   + G  +GR+     
Sbjct: 1048 LKDFGFILRNLTSEVAQLRYDPQVVKRLGADRELFTKYMKSAVKHSKPGDPKGRDPLISA 1107

Query: 1069 -DKGSHTFVMGRNQEMIYKKCSGQLDA-SNAYIMELPDALKDNAEKFADKFLSNEMAKQD 1126
             +  ++ FV+    E  Y   S  L A ++  I E  D    ++        SN + K++
Sbjct: 1108 FNPATNAFVLS---EAFYNAMSSYLKANADGLIREKRDKSAPDS--------SNALNKKN 1156

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
               L   K++ SL +PGE VG++A QSVGEPSTQMTLNTFHLAG    NVT GIPRL+EI
Sbjct: 1157 AEVLFAMKYLQSLVEPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHAAKNVTAGIPRLREI 1216

Query: 1187 LTIASKDIKTPVIT 1200
            L  ASKDI TP ++
Sbjct: 1217 LMTASKDISTPAMS 1230


>gi|396081638|gb|AFN83253.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon romaleae
            SJ-2008]
          Length = 1315

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 310/1023 (30%), Positives = 492/1023 (48%), Gaps = 184/1023 (17%)

Query: 214  DTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGF 273
            + + R+ +   G  P G+    +  + PL+     +I + + E+++EL  F     +   
Sbjct: 176  EDSERKKRDKDGKGPGGYFPHHEEMN-PLM---ALNIFKMMKEDDYELLGFSESPDR--- 228

Query: 274  GKKAGHSIFFLGVVLVPPIKFRLPSKGGDS--VMEHPQTVLLSKVLQANIYLANAYVNQP 331
                      +  V+VPP   R PS   D     E   T+ +S+++  N  L    + + 
Sbjct: 229  --------LIIQNVIVPPSCIR-PSVSMDDEGTNEDDITIKISEIVHTNKILKEG-IEKG 278

Query: 332  DNAKVIVARWMNLQQSVNVLFDGK----NAAGQRDMASGICQLLEKKEGLFRQKLMGKRV 387
            +   +I   W +LQ    +L + +       GQ     GI Q L+ K G FR  L GKRV
Sbjct: 279  NPLNLINEDWDHLQLQCALLINSELPQVGIPGQP--VRGIVQRLKGKNGRFRCNLSGKRV 336

Query: 388  NYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY 447
            +++ R+VISPDP L++ E+GIP   A  LT  E+VT +N  KL+  ++NG E +PGA + 
Sbjct: 337  DFSGRTVISPDPNLSIEEVGIPERMAKILTISEKVTRFNKEKLQSLVLNGPEKYPGANYV 396

Query: 448  LDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNR 507
                              +G K    +  ++   +D++ ++ G++V RHL DGD++L NR
Sbjct: 397  ------------------VGEKF---KRFLMYGKRDAELKY-GEVVERHLLDGDMILFNR 434

Query: 508  QPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIV 567
            QP+LH+ SIM+H V++    KTLR +   C+ YNADFDGDEMNVH PQ E +RAEA  ++
Sbjct: 435  QPSLHRMSIMSHKVKI-HNNKTLRFNECVCTPYNADFDGDEMNVHVPQTEKARAEASILM 493

Query: 568  NANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLL-YSSGVSSSGLGSFT 626
            + +N  V P +G+P+ +  QD I    L+T KDTF +R+ F QL+ Y SG          
Sbjct: 494  SVSNNIVTPRHGEPIIAPTQDFITGLYLITGKDTFFDRERFGQLVSYFSGT--------- 544

Query: 627  GKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQ 686
                 RV I           PAI +P  L+TGKQ+I A++                    
Sbjct: 545  -----RVNIK----------PAIRRPVELFTGKQLIEALI-------------------- 569

Query: 687  DFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKE 746
               K  F   K+   +  DK      + + K++S K +                     +
Sbjct: 570  ---KDSFGGIKERSTEYQDKS----ISLIGKNRSFKSR--------------------ND 602

Query: 747  LSEEKLLIYKNDLVRGVIDKAQFA----DYGLVHTVQELYGSNTAGT-LLSALSRLFTVF 801
             ++  ++I  N    G +DK+          L++ + ++  SN A   +++++++L + +
Sbjct: 603  PNDGNVIILDNSYYFGRLDKSIIGGENKKNSLIYAIMKV--SNKAAVRVMNSITKLCSRY 660

Query: 802  LQMHGFTCGVDDLL---ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKS 858
            L   GF+ G+DD+    IL+ K+        G  E   ++    LE    +E +   L+ 
Sbjct: 661  LGEVGFSIGLDDVQPGPILRKKKEMVVG--KGYSECESKI----LEYSKKSESNEEVLEM 714

Query: 859  EIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAK 918
            EI   +                +++ +   S  I EL        + +N  + M   G+K
Sbjct: 715  EISSIL----------------NRIREECGSICIKEL--------SIRNSPNTMQACGSK 750

Query: 919  GSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQE 978
            GSK+N  Q+ + +GQQ + G R+P  +  + LP F      P + GF+++ F  GL   E
Sbjct: 751  GSKINVSQMVACVGQQIVSGTRIPNGMDDRCLPHFPRGCRTPESKGFVLNSFFDGLTSPE 810

Query: 979  YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDG 1038
            ++FH ++GREGLVDTAVKT+ +GY+QR L+K LE L I YD SVR++   +VQF +GED 
Sbjct: 811  FFFHAVSGREGLVDTAVKTAETGYMQRRLMKALEDLSIQYDGSVRNSSMEVVQFAFGEDQ 870

Query: 1039 VDVHQTSFISKFDALAARERGRGRGRNKF-----CDKGSHTFVMGRNQEM------IYKK 1087
            +D      +S+ D     ER   + ++KF       +G   F +     +      I K 
Sbjct: 871  ID----PVMSEGDDPINLERVFLQTKSKFLRSLNSGQGPCLFQLEEWDSIDNLKRSIPKG 926

Query: 1088 CSGQLDASNAYIMELPDALKDN-AEKFA------DKFLSNEMAKQDFLKLVKHKFVLSLA 1140
               +   +  +I  L   ++    +KF         F  N+ AK  F   +  K +  + 
Sbjct: 927  YPVERIVNKRFIETLLGFIESKRGDKFPLNGTFYSYFSCNDFAKI-FFSAISQKMIDLII 985

Query: 1141 QPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
            +PG  VG +A QS+GEP TQMTL TFH AG   MN+TLG+PRL+EI+  A  +I TP+I 
Sbjct: 986  EPGTTVGAIAGQSIGEPGTQMTLKTFHFAGVASMNITLGVPRLKEIIN-AVCNISTPIIN 1044

Query: 1201 CPL 1203
              L
Sbjct: 1045 AEL 1047


>gi|340344217|ref|ZP_08667349.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrosoarchaeum
            koreensis MY1]
 gi|339519358|gb|EGP93081.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrosoarchaeum
            koreensis MY1]
          Length = 1263

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 305/993 (30%), Positives = 464/993 (46%), Gaps = 176/993 (17%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P+ F ++ ++    LLP  +++   ++ +++  L S+     +  +        F L  +
Sbjct: 164  PTIFVEKTEIGEHRLLPITIRERFTQIIDDDLNLLSYDPVTARPEW--------FILQAL 215

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
             VPP+  R PS   ++ +  E   T  +  +++ N  L  +   +     +IV   ++L 
Sbjct: 216  PVPPVTVR-PSIILETGIRSEDDLTHKMVDIIRVNQRLKES--KEAGTPPLIVQDLVDLL 272

Query: 346  QSVNVLFDGKNAAG--QRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
            Q     +     +G  Q    SG     + Q L+ KEG FR  L GKRV+++ R+VISPD
Sbjct: 273  QYHTTTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPD 332

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP 458
            P L ++E+G+P   A++LT PE VT WN+ ++R  +ING    PG  + +        P 
Sbjct: 333  PNLDLSEVGVPEQVAMKLTIPEIVTEWNIERMRTLVINGPNKFPGVNYIVR-------PD 385

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
              K+R+         R  I +  +       G +V RHL +GD+VL NRQP+LH+ SIMA
Sbjct: 386  GVKIRLDFVE----DRSTIAETLEI------GYLVERHLANGDIVLFNRQPSLHQMSIMA 435

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H VRVL G KT R+H + C  YNADFDGDEMN+H PQ E +RAEA  ++   +Q + P  
Sbjct: 436  HYVRVLPG-KTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAILLMRVQDQLISPRY 494

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            G P+   ++D +  A LLTK DT L   EF    Y+  +    LG +T K          
Sbjct: 495  GGPIIGALRDFVTGAYLLTKDDTVLTPQEF----YNYAM----LGGYTDK---------- 536

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
                LP      K   ++TGKQ+ +                    LP+DF          
Sbjct: 537  ----LPKPATKTKDGLMYTGKQLFSLF------------------LPKDF---------- 564

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND 758
                         T+K  K   G +K+VV                          I   +
Sbjct: 565  ---------NYVITSKWSKGTKGAQKDVV--------------------------IKNGE 589

Query: 759  LVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
            L+ GVIDK+         ++H + + YG+  A   L+++  +   ++  +GF+ G  DL 
Sbjct: 590  LLSGVIDKSSIGAEEPESVLHRIAKDYGNTKAKNFLNSILIMVKQYITHYGFSYGYADLE 649

Query: 816  ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYF 875
            +    E+E++  L   +E    +     + E G     +KL     + MR   +A  AY 
Sbjct: 650  V---PEKEKQQILDDIQETYGIISDLTSQYEKGT----LKLT----RGMR-PEEALEAYI 697

Query: 876  DMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQE 935
              ++    +K   ++  ++ L +        N   +M T+GA+GS +N  Q++  LGQQ 
Sbjct: 698  VNELGKARDKAGMTA--DQSLDQS-------NAGRIMATTGARGSALNIGQMAGALGQQS 748

Query: 936  LEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAV 995
              G R+    + + LP +   D  P A GF+   +  GL   E++FH M GREGLVDTAV
Sbjct: 749  RRGSRLHAGYNNRALPHYQEHDKNPDAHGFVKSNYREGLSALEFFFHAMGGREGLVDTAV 808

Query: 996  KTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAA 1055
            +T +SGY+QR LI  LE +++ YD +VRD  G I+QF YGEDG+DV ++     F+    
Sbjct: 809  RTQQSGYMQRRLINALEHIRLEYDGTVRDPHGHIIQFLYGEDGIDVAKSDHGEAFNV--- 865

Query: 1056 RERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFAD 1115
                R        D G         +E I +         N  + EL       +E   D
Sbjct: 866  ---NRLIESQIIVDSGKKA-----TKEEITELTKKYTKTFNPRLKELV------SEGLLD 911

Query: 1116 KFLSNEMAKQDFLKLVKHKFVLSL-----AQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
              LS E A+      +  K  LSL      +PG+ VG++ +QS+GEP TQMTL TFH AG
Sbjct: 912  SKLSKEGAE------IVCKKGLSLYNKAKVEPGQAVGIITAQSIGEPGTQMTLRTFHFAG 965

Query: 1171 RGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
              E NVTLG+PRL E++    K + TP +   L
Sbjct: 966  IAERNVTLGLPRLIELVDARKKPV-TPTMDIYL 997



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEK 56
           C TCG     CPGHFGHI+L  PV +    + +Y LL+  C  C   K  + ++E+
Sbjct: 61  CLTCGNTAARCPGHFGHIELAEPVLHIAFIDNIYKLLQSTCRSCARLKVPQEDLEE 116


>gi|154276528|ref|XP_001539109.1| hypothetical protein HCAG_06714 [Ajellomyces capsulatus NAm1]
 gi|150414182|gb|EDN09547.1| hypothetical protein HCAG_06714 [Ajellomyces capsulatus NAm1]
          Length = 1573

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 240/588 (40%), Positives = 325/588 (55%), Gaps = 86/588 (14%)

Query: 641  EVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSD 700
            ++L + PAI +P  LWTGKQVI+ ++ +IT              P+ F+           
Sbjct: 605  KILLMKPAILRPRKLWTGKQVISTIMMNIT--------------PERFYGL--------- 641

Query: 701  RKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DL 759
                    L+  ++   D+ G                        E SEE  +I+++ +L
Sbjct: 642  -------NLTGKSRTSGDRWG------------------------EGSEEGQVIFRDGEL 670

Query: 760  VRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLIL 817
            + G++D AQ      GL+H+V E+YG   AG LL  L RL T FL M  FTCG+DDL + 
Sbjct: 671  LCGILDSAQLGPSPGGLIHSVHEIYGHVVAGKLLGVLGRLLTKFLHMRAFTCGIDDLRLT 730

Query: 818  KDKERERKNHLHGSEEIGKRVHLEALELEDGA-EIDPIKLKSEIEKAMRGGGDAAVAYFD 876
            K    +R+  L  +E IG+ V L+ + L+    E +  +LK  +E A+R   D   A  D
Sbjct: 731  KKGNEDRRKKLQEAEHIGRHVALKYVTLDQTKFEDEEAELKRRLEDALRD--DEKQAGLD 788

Query: 877  MKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
              + SQ     SS +    L  GL KP   N +  MTTSGAKGS VN   IS +LGQQ L
Sbjct: 789  AVLNSQA-ADISSDITAACLPVGLEKPFPWNQMQTMTTSGAKGSVVNANLISCNLGQQVL 847

Query: 937  EGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVK 996
            EG+RVP M+SGKTLPSF P+D    A GF+  RFLTG++PQEYYFH MAGREGL+DTAVK
Sbjct: 848  EGRRVPVMISGKTLPSFRPFDTNLMASGFVSGRFLTGIKPQEYYFHAMAGREGLIDTAVK 907

Query: 997  TSRSGYLQRCLIKNLECLKISYDYSVRD-ADGSIVQFCYGEDGVDVHQTSFISKFDALAA 1055
            TSRSGYLQRCLIK +E LK  YD SVR+ ADGS++QF YGEDG+++ +   +  F  LA 
Sbjct: 908  TSRSGYLQRCLIKGMEGLKAEYDNSVRETADGSVMQFLYGEDGLEITKQKHLQDFPFLAH 967

Query: 1056 RERG---RGRGRNKFCD-KGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELP--DALKDN 1109
                      G ++F   K        R+    Y+K +G+LD  +  +   P        
Sbjct: 968  NFWSVVEELNGSDEFNRVKSDKAGDWNRHAIKKYRK-TGKLDCVDPALSLFPPGSCYGST 1026

Query: 1110 AEKFA-----------DKFLSNE------MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQ 1152
            +E FA           D+ L  +      ++K+DF +++  K++ S+ +PGE VG++A Q
Sbjct: 1027 SETFAMALKLYQKENPDQILKEKGKVEKGISKKDFARVMNLKYMRSVVEPGESVGIVAGQ 1086

Query: 1153 SVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
            S+GEPSTQMTLNTFHLAG    NVTLGIPRL+EI+  AS  I TP +T
Sbjct: 1087 SIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREIVMTASNQILTPTMT 1134



 Score =  127 bits (318), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 125/220 (56%), Gaps = 17/220 (7%)

Query: 242 LLPS-DVKDIIEKLWENEFELCSFISDMQQQGFGK-KAGHSIFFLGVVLVPPIKFR-LPS 298
            +PS +V   +  L+E E E+   + D + +   + +    +FF+  +LVPP K+R + +
Sbjct: 326 FMPSPEVYAALRLLFEKEQEVLDLVYDSRPKSKHRPRVTPDMFFIKNILVPPNKYRPIAA 385

Query: 299 KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR---WMNLQQSVNVLFDGK 355
            G + ++E  Q +  +++++    +      +  ++   V R   + +L Q++  L D  
Sbjct: 386 TGSNDIIEAQQNISFTRIMKLCDQINQISRERQGDSTESVTRLRDYRDLLQAIVQLQDAV 445

Query: 356 NAAGQRDM-----------ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVN 404
           N+   RD              GI Q LEKK+GLFR+ +MGKRVN+A RSVISPDP +  N
Sbjct: 446 NSLIDRDRNPNQGVAGIQNEDGIKQRLEKKDGLFRKNMMGKRVNFAARSVISPDPNIETN 505

Query: 405 EIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGA 444
           EIG+P  FA +LTYPE VT  N  +L++++ING +++PGA
Sbjct: 506 EIGVPLVFAKKLTYPEPVTNHNYWELKNAVINGPDVYPGA 545



 Score = 66.6 bits (161), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 43/76 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    + C GH GHI+L V VYN   F+ L+ LL+  C +CH F+ SR ++     K
Sbjct: 63  CTTCRLNSWSCNGHAGHIELPVHVYNVTFFDQLFRLLRAQCVYCHRFRMSRADIMSYTCK 122

Query: 61  LELIIKGDIIAAKSLD 76
           L L+  G +  A ++D
Sbjct: 123 LRLLQYGLVEEAAAID 138


>gi|341038609|gb|EGS23601.1| DNA-directed RNA polymerase-like protein [Chaetomium thermophilum
           var. thermophilum DSM 1495]
          Length = 1713

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 260/747 (34%), Positives = 379/747 (50%), Gaps = 111/747 (14%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TC   Q  CPGH GHI+L VPVY+P+  +  Y LL+  C +CH F+  R E+ + +  
Sbjct: 62  CRTCNLNQAQCPGHPGHIELPVPVYHPVFMDQAYRLLRAQCVYCHRFRLPRHEIHRYICM 121

Query: 61  LELIIKGDIIAAKSLDL----------------DLPSESSNPEDSDVSNKSSCSMVT--- 101
             L+  G +  A+ +D                 D+P    +    + +N    +M T   
Sbjct: 122 FRLLQVGLVHEAQMIDSFSVSDLGEQVRKLQLNDVPDIEDDEAQEEGNNIHDSTMRTREA 181

Query: 102 ----------PRGNYDNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRIS 151
                      R +  ++R  K +    ++    K  L Q +K    +C +C   +P   
Sbjct: 182 YVRQVLQNYRKRVSIGDIRKGKHEGAAEMRRTLVKEFLAQMVK--EKRCRSCDGISPVYR 239

Query: 152 KPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEK-------DLGASS---DVDAPE 201
           K  +  I+   +   +  A    G    +  +   + K       D G +      D+ E
Sbjct: 240 KDRWVKIYERDLTEKEKAAMAQAGRKRTDALALARKAKKHEDGMNDEGIADMELTDDSSE 299

Query: 202 THSF---------NGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIE 252
            H           NG    T D A +  QK    V +    Q+ L +      +V++ + 
Sbjct: 300 EHDSEGEGEELDENGDVVMT-DAATKTKQK---TVKAPKPNQRYLST-----MEVRERLN 350

Query: 253 KLWENEFELCSFI-SDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDS-VMEHPQT 310
            L+E E EL S + S   +          +FF+  +LVPP ++R  ++ GD+ + E  Q 
Sbjct: 351 LLFEREQELLSLLYSAKPRPKNSPPLTADMFFITTLLVPPNRYRPEARMGDNQISEAQQN 410

Query: 311 VLLSKVLQANIYLANAYVNQPDNAKV------------IVARWMNLQQSVNVLFDG---- 354
            L   +++A   +A        N               +   W  LQ +VN L D     
Sbjct: 411 NLYKMIIRAASRVAQISREIAGNKDAANEGRAIRDMSHLYQAWTELQDAVNSLIDRDKNP 470

Query: 355 -KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
            + AA +R+   GI Q LEKKEGLFR+ +MGKRVN+A RSVISPDP +  NEIG+PP FA
Sbjct: 471 IQGAAAKRN-EEGIKQKLEKKEGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPPVFA 529

Query: 414 LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM--RISIGRKLD 471
            +LTYPE VT  N   L+ ++ING +  PGA+   ++   +    +K +  RI++  +L 
Sbjct: 530 RKLTYPEPVTSHNFKDLQQAVINGCDKWPGASAIENENGQIINLRSKSLEDRIALANQLL 589

Query: 472 TSRGAIVQPGKDSDNEFEG---KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK 528
              G          N F G   K V+RHL +GDVVL+NRQPTLHKPSIM H VRVL GEK
Sbjct: 590 APTG----------NNFSGVRNKKVHRHLTNGDVVLMNRQPTLHKPSIMGHRVRVLPGEK 639

Query: 529 TLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQD 588
           T+RMHYANC+TYNADFDGDEMN+HFPQ+E++RAEA  + + ++QY+  + G+PLR LIQD
Sbjct: 640 TIRMHYANCNTYNADFDGDEMNMHFPQNEIARAEALQLADTDHQYISGTAGNPLRGLIQD 699

Query: 589 HIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPA 648
           H+  + +L  KDTF +R  + QL+Y++    SG  +     G+R+       E++P  PA
Sbjct: 700 HLSVSVMLCSKDTFFDRRTYQQLIYAALRPESGHIT-----GERI-------ELVP--PA 745

Query: 649 IWKPEPLWTGKQVITAVLNHITRGRPP 675
           I+KP P WTGKQVIT +L +I   RPP
Sbjct: 746 IFKPVPRWTGKQVITTILKNI---RPP 769



 Score =  355 bits (911), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 203/494 (41%), Positives = 294/494 (59%), Gaps = 39/494 (7%)

Query: 739  KNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSR 796
            K++S   +  E  ++    + + G++DK+Q   +D G +H V E+YG + AG LLS + R
Sbjct: 783  KSRSWGPDSMEGTVMFRDGEFISGILDKSQLGPSDGGFIHAVHEVYGPSVAGKLLSGMGR 842

Query: 797  LFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG--AEIDPI 854
            L   +L M  FTCG+DDL +  + E+ RK  +  +  IG  V  + + LED    + DP+
Sbjct: 843  LLNRYLAMVAFTCGMDDLRMTPEGEKNRKEIIKAAANIGLEVAAKYVSLEDQKPTKDDPL 902

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
             L+   E          +      +T+Q     S+++  + L  GL K   +N +  MT 
Sbjct: 903  LLERLEEVLRDDKKQEGLEL----LTNQACAKLSTAITEKCLPAGLEKQFPQNHMQSMTI 958

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            SGAKGS VN   IS +LGQQ LEG+RVP MVSGKTLPSF P+D   RAGG+I++RFLTG+
Sbjct: 959  SGAKGSPVNANLISCNLGQQVLEGRRVPVMVSGKTLPSFKPFDTDVRAGGYIVNRFLTGI 1018

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
            RPQEYYFH MAGREGL+DTAVKTSRSGYLQRCLIK +E L+++YD +VRD+DGS+VQF +
Sbjct: 1019 RPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRVAYDSTVRDSDGSVVQFLF 1078

Query: 1035 GEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDA 1094
            GEDG+D+ +  +++ F+    R       + ++ + G       +++  + K+    + +
Sbjct: 1079 GEDGIDISKQKYLNDFE-FVLRNLDSQLPQIRYHEPGVQALFEHKDE--VIKRMKSAIRS 1135

Query: 1095 SNAY--IMELPDALKDNAEKFA--DKFLSNEM------------------------AKQD 1126
            +N+   +  + + L  +   FA  +KF +  M                        +++ 
Sbjct: 1136 ANSRDPLNPVQNELDPSTFGFATSEKFFAKMMEYVKNNKDGLIKEKGSKESKKGTISRKT 1195

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
              K++  K++ SL +PGE VG++A QS+GEPSTQMTLNTFHLAG    NVTLGIPRL+EI
Sbjct: 1196 AEKILAAKYIRSLVEPGEAVGIVAGQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREI 1255

Query: 1187 LTIASKDIKTPVIT 1200
            L  AS  I TP +T
Sbjct: 1256 LMTASARISTPAMT 1269


>gi|302808041|ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
 gi|300146624|gb|EFJ13293.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
          Length = 1393

 Score =  375 bits (962), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 303/953 (31%), Positives = 455/953 (47%), Gaps = 157/953 (16%)

Query: 289  VPPIKFRLPSKGGDSVM---EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
            VPP+  R PS   D+ +   E   T+ L  +++ N  +     +    AK +   W  LQ
Sbjct: 270  VPPVAIR-PSVEMDAAVGSNEDDVTIKLMHIIEQNNQIRACLESGLSIAKCMEI-WDFLQ 327

Query: 346  QSVNVLFDGKNAAGQRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
              V +  + +      +M +G       Q L+ K+G FR  L GKRV++  R+VISPDP 
Sbjct: 328  IQVAMYINSELPGLPPNMQTGKPLRGFVQRLKGKQGRFRGNLSGKRVDFTGRTVISPDPN 387

Query: 401  LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK 460
            L V+E+ +P   A  LTYPE+V+  N+ KLR  +ING E HPGA   +        P   
Sbjct: 388  LKVSEVAVPILMAQTLTYPEKVSAHNIEKLRQRVINGKEKHPGANFVV-------FPDGV 440

Query: 461  KMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHV 520
            K  +  G   D  R A       S+ ++ G +V RHL+DGD+VL NRQP+LH+ SIM H 
Sbjct: 441  KRFLKFG---DRKRIA-------SELKY-GDVVERHLEDGDIVLFNRQPSLHRMSIMCHR 489

Query: 521  VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGD 580
             RV+   +TLR + + C+ YNADFDGDEMN+H PQ E +R EA  ++   N    P NG+
Sbjct: 490  ARVMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALTLMGVQNNLCTPKNGE 548

Query: 581  PLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQ 640
             L +  QD + S+ L+T++DTF +R +F  +            S+ G   + +       
Sbjct: 549  ILVASTQDFLTSSFLITRRDTFYDRGQFALMC-----------SYMGDAVEHI------- 590

Query: 641  EVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSD 700
              LP  PAI KP  LWTGKQ+   ++      RP   +    K+  +F     N  K ++
Sbjct: 591  -DLP-TPAILKPVELWTGKQLFGVLI------RPSARI----KVFLNFVVCEKNHKKGTE 638

Query: 701  RKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLV 760
                  G +   N           E++ G+ G  K    N SK+                
Sbjct: 639  TMCPKDGYVFFKN----------SELICGQLG--KGTLGNGSKD---------------- 670

Query: 761  RGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDK 820
                        GL   +   YG   A + ++ L++L   ++  HGF+ G+DD+      
Sbjct: 671  ------------GLFTVLLRDYGEQAAASCMNRLAKLSARWIGNHGFSIGIDDV------ 712

Query: 821  ERERKNHLHGSEEIGKRVHLEALE-LEDG--AEIDPIKLKSEIEKAMRGGGDAAVAYFDM 877
                        + G R+ +E  + + +G  A    I L ++ +  ++ G DAA    + 
Sbjct: 713  ------------QPGSRLTVEKEKRIAEGYRACDKHISLFNKGQLTLQPGCDAA-QTLES 759

Query: 878  KMTSQLNKHTSSS---VINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
            ++T +LNK   ++    +NEL          +N   +M+  G+KGS +N  Q+ + +GQQ
Sbjct: 760  EITGELNKIREAAGQVCVNEL--------HWRNSPLIMSQCGSKGSVINISQMIACVGQQ 811

Query: 935  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
             + G R P     ++LP F   D  P+A GF+ + F +GL   E+ FH M GREGLVDTA
Sbjct: 812  SVSGHRAPNGFIERSLPHFPRNDKTPQAKGFVANSFYSGLTATEFIFHTMGGREGLVDTA 871

Query: 995  VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV----HQTSFISKF 1050
            VKT+ +GY+ R L+K LE L   YD +VR++ G IVQ  YG+D +D      Q       
Sbjct: 872  VKTAETGYMSRRLMKALEDLSCQYDGTVRNSSGVIVQLIYGDDSMDPVSMEGQNGTPLNL 931

Query: 1051 DALAARERG---RGRG------------RNKFCDKGSH--TFVMGRNQEMIYKKCSGQLD 1093
            D +  + +    RG               +KF   GS   T  +   ++ + K+      
Sbjct: 932  DRVLMKAKATCPRGTTPALPPSELWKIVESKFSQDGSECSTAFLDSLRKFLRKEFDTISS 991

Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQ--DFLKLVKHKFVLSLAQPGEPVGLLAS 1151
                  + L D    + E  A   +S   ++Q   FL     ++      PG  VG + +
Sbjct: 992  TRKRLSLPLDDFGNVDDENVAAN-VSGLTSRQLEVFLNTCIGRYHRKKLDPGTAVGAIGA 1050

Query: 1152 QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            QS+GEP TQMTL TFH AG   MN+TLG+PR++EI+  ASK I TP+IT  L+
Sbjct: 1051 QSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKKISTPIITAKLV 1102



 Score = 44.7 bits (104), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRIC---FFCHHFKASRREVEKC 57
           C TC  +   CPGHFG+I L +PV++   F  +  +L+ IC   F      AS+ E +K 
Sbjct: 85  CTTCDGKLADCPGHFGYIKLELPVFHIGYFKDIIVILQCICKASFSLLEVVASQEERQKW 144

Query: 58  VRKLE 62
            R+++
Sbjct: 145 QRRMQ 149


>gi|255076723|ref|XP_002502032.1| predicted protein [Micromonas sp. RCC299]
 gi|226517297|gb|ACO63290.1| predicted protein [Micromonas sp. RCC299]
          Length = 1479

 Score =  374 bits (961), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 266/858 (31%), Positives = 419/858 (48%), Gaps = 135/858 (15%)

Query: 366  GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPW 425
            G  Q L+ K+G FR  L GKRV+++ R+VISPDP L ++E+G+P + A  +TYPE V+  
Sbjct: 356  GFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVGVPMHIAKMMTYPEVVSRH 415

Query: 426  NVVKLRDSIINGAEIHPGATHYLDKLS-TMRLPPNKKMRISIGRKLDTSRGAIVQPGKDS 484
            N+  +R+ + NG   HPGA     K   T  L    + R++   K               
Sbjct: 416  NIEMIRERVRNGMNKHPGANFVRFKSGGTQYLKYGDRRRVASELKY-------------- 461

Query: 485  DNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADF 544
                 G +V RHL DGDV+L NRQP+LHK SIMAH  RV+   +TLR +   C+ YNADF
Sbjct: 462  -----GDVVERHLHDGDVLLFNRQPSLHKMSIMAHRARVMPW-RTLRFNECVCTPYNADF 515

Query: 545  DGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLN 604
            DGDEMN+H PQ E +RAEA N+++ +N    P NG+ L +  QD + ++ +LT +D FL+
Sbjct: 516  DGDEMNIHCPQTEEARAEAINLMSVHNNLCTPKNGEILVAATQDFLTASYILTARDHFLD 575

Query: 605  RDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITA 664
            R +   L+   G +   +                    LP  PAI KP  LWTGKQ+ + 
Sbjct: 576  RAQVGALIAYMGDALMAVD-------------------LP-TPAIIKPVELWTGKQLFSV 615

Query: 665  VLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKK 724
            ++      RP  V         D         +++  KK+ +    +   +    S    
Sbjct: 616  LI------RPRAV---------DRVFVNLEVAEKNYSKKDTRHMCPRDGYVCIQNS---- 656

Query: 725  EVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGS 784
            E++ G+ G+      NK+                              GL + +   YGS
Sbjct: 657  EIMCGQLGKATLGSGNKN------------------------------GLFYVLNSEYGS 686

Query: 785  NTAGTLLSALSRLFTVFLQMHGFTCGVDDLLI---LKDKERERKNHLHGS-EEIGKRVHL 840
                + ++ +++L   +L   GF+ G+DD+     L+D++ +  +  +G+ +E  +    
Sbjct: 687  EQTASCMNRVAKLSARWLGTRGFSVGIDDVTPGHRLQDEKGKVVDRGYGACDERIEAFKR 746

Query: 841  EALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGL 900
              L L+ G   +   L++E+                + + S + +   +  ++EL     
Sbjct: 747  GTLALQPGCNAEQT-LEAEV----------------LGILSTVRETAGNVCLDELPRH-- 787

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
                  N   +M   G+KGS +N  Q+ + +GQQ + G R P   + ++LP F   +  P
Sbjct: 788  ------NAPLIMALCGSKGSTINISQMVACVGQQAVGGTRPPDGFAERSLPHFKRGEKTP 841

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
             A GF+ + F +G+RP E++FH MAGREGLVDTAVKT+ +GY+ R L+K LE L + YD 
Sbjct: 842  AAKGFVANSFFSGMRPTEFFFHTMAGREGLVDTAVKTAETGYMSRRLMKALEDLSLRYDG 901

Query: 1021 SVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKG-SHTFVMGR 1079
            +VR++ G IVQ  YG+DG++  +            R     +G       G SH+  +  
Sbjct: 902  TVRNSTGGIVQLSYGDDGMEPTEMEGADAQPVEFPRLLQHVKGLVPRAGSGLSHSRKIAV 961

Query: 1080 NQEMIYKKCSGQLDASNAYIME--LPDALKDNAEKFADKFL------------SNEMAKQ 1125
             +  ++ + +   +   A+ ++  +    K +  +FA   L              +    
Sbjct: 962  AKAEMHTRAAAMNNEDGAHKIKDGMSVKFKHDLVRFARANLVRVGKPEGHGVGVTKAQLD 1021

Query: 1126 DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1185
            +FL+    K+     +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR++E
Sbjct: 1022 EFLERCVRKYSAKRIEPGSAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKE 1081

Query: 1186 ILTIASKDIKTPVITCPL 1203
            I+  A+K+I TP+IT  L
Sbjct: 1082 IIN-AAKNISTPIITATL 1098



 Score = 41.2 bits (95), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 32/61 (52%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC  +   C GHFG++ L +PV++   F  +  +L+++C  C        E ++ +++
Sbjct: 90  CATCKGKLIDCAGHFGYVKLELPVFHIGYFKNIIAILQQVCKECSRVMLPEEERQQYLKR 149

Query: 61  L 61
            
Sbjct: 150 F 150


>gi|332024635|gb|EGI64832.1| DNA-directed RNA polymerase III subunit RPC1 [Acromyrmex echinatior]
          Length = 1988

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 308/962 (32%), Positives = 457/962 (47%), Gaps = 183/962 (19%)

Query: 289  VPPIKFRLPS-----KGGDS----VMEHPQTVLLSKVLQ----ANIYLANAYVNQPDNAK 335
            VPPI  R PS     K G +     M+  +  L++ V++     NI   N Y+ Q D  +
Sbjct: 870  VPPICIR-PSILSDLKAGTNEDYLTMKLSEIALINDVIRKQKGVNI---NTYMEQWDFLQ 925

Query: 336  VIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
            +    ++N + S   L      +G+     GI Q L+ K+G FR  L GKRV++  R+VI
Sbjct: 926  LHCGLYINSEMSGIPLHMQPKKSGR-----GIVQRLKGKQGRFRGNLSGKRVDFTSRTVI 980

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMR 455
            SPDP L + ++G+P + A  LTYPERV P N+  +R  + NG + HPGA +   K     
Sbjct: 981  SPDPNLRIEQVGVPIHVAKTLTYPERVIPSNMELMRKLVRNGPDTHPGANYIQYK----- 1035

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
               N + R  +G   D ++ A        D ++ G +V RHL+D D+VL NRQP+LHK S
Sbjct: 1036 ---NSQNRRYLGYG-DRNKAA-------QDLQY-GDIVERHLKDDDLVLFNRQPSLHKLS 1083

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            IM H  +VL+  +T R +   C+ YNADFDGDEMN+H PQ E +RAEA  ++   +  V 
Sbjct: 1084 IMTHRTKVLE-HRTFRFNECVCAPYNADFDGDEMNLHLPQTEEARAEALVLLANKSNLVT 1142

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLN----RDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
            P NGD L +  QD I  A LLT+KDTFL     R   C L  S                 
Sbjct: 1143 PRNGDLLIAATQDFITGAYLLTQKDTFLQIEQARLALCLLAGSDA--------------- 1187

Query: 632  RVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKT 691
                  S +  LP  PAI KP  LWTGKQ+ + ++      RP                 
Sbjct: 1188 ------SMKVTLP-PPAIIKPARLWTGKQIFSLII------RP----------------- 1217

Query: 692  RFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEK 751
                +K+   K N K K            GK                    KE  +++  
Sbjct: 1218 ----NKECSVKANLKAK------------GKT---------------YTNGKEFCINDSY 1246

Query: 752  LLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFT 808
            ++I  ++L+ G +DK+     +   + + +   +G + A   +  L+R+   F    G +
Sbjct: 1247 VIIRNSELLAGTMDKSILGSGSKQNIFYILLRDWGEDVATAAMWRLTRITNHFNFERGIS 1306

Query: 809  CGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAM 864
             G+ DL+    +L+ KER    H     E  + +    L  + G         SE E   
Sbjct: 1307 LGIGDLIPSQGLLRAKERILNTHYSTCNEYIQLMEQGHLVCQPGC--------SEEET-- 1356

Query: 865  RGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLK---PTGKNWISLMTTSGAKGSK 921
                       + ++ ++L      SVI + + +  LK   PT  N    M   G+KGS 
Sbjct: 1357 ----------LETRILNEL------SVIRDDVGKACLKELHPT--NTPLTMALCGSKGSF 1398

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            +N  Q+ + +GQQ + G RVP     + LP        P A GF+ + F +GL  +E+YF
Sbjct: 1399 INISQMIACVGQQAINGCRVPDGFENRALPHVLTRSKKPDAKGFVENSFYSGLVSKEFYF 1458

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV 1041
            H M GREGL DTAVKT+ +GY+QR LIK+LE L I YD +VR++   ++Q  YG DG+D 
Sbjct: 1459 HAMGGREGLTDTAVKTAETGYMQRRLIKSLEDLCIHYDMTVRNSMRDMIQTTYGGDGLD- 1517

Query: 1042 HQTSFISKFDALAARERGRGRGRNKFC----DKGSHTFVMGRNQEMI----YKKCSGQLD 1093
               +++   D     ER     R K      +   +  V+   +EM+    Y+  S +  
Sbjct: 1518 --PTYMEGKDCPVDYERVYEHVRAKMPYITEEPLDYASVINATKEMLRSEEYECLSEEFK 1575

Query: 1094 ASNAYIMELPDALK-----------DNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQP 1142
                  ++L  A K            +     ++F  +++   +F+   K K++ +  +P
Sbjct: 1576 DELTSFLKLKVARKIAFYRQNIISNSSVTSQLERFTVSQLV--EFIHTCKEKYMRAKIEP 1633

Query: 1143 GEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCP 1202
            G  VG LA+QS+GEP TQMTL TFH AG   MN+T G+PR++EI+  AS  I TP+IT  
Sbjct: 1634 GTAVGALAAQSIGEPGTQMTLKTFHFAGVAAMNITQGVPRIKEIIN-ASPKISTPIITAT 1692

Query: 1203 LL 1204
            L+
Sbjct: 1693 LI 1694



 Score = 44.3 bits (103), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 29/46 (63%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHH 46
           C+TC ++   C GHFG+++L +PV++   F  +  +L+ IC  C H
Sbjct: 678 CETCNKKLNDCVGHFGYLNLELPVFHVGYFKSIIQILQTICKSCAH 723


>gi|212538083|ref|XP_002149197.1| DNA-directed RNA polymerase III largest subunit, putative
            [Talaromyces marneffei ATCC 18224]
 gi|210068939|gb|EEA23030.1| DNA-directed RNA polymerase III largest subunit, putative
            [Talaromyces marneffei ATCC 18224]
          Length = 1439

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 300/983 (30%), Positives = 469/983 (47%), Gaps = 180/983 (18%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVM-EHPQTVLLSKVLQANIYLANAYVNQPDNAKV--IV 338
            F    +  PP   R PS   D    E   T  L  ++Q+NI L N   N    A V  ++
Sbjct: 265  FLWQYIPAPPNCIR-PSVSQDGASNEDDLTAKLGDIVQSNITLRN---NLRKGAPVPTLM 320

Query: 339  ARW--MNLQQSVNVLFDGKNAAGQRDMAS-GICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
              W  M LQ ++ +  D     G+    +  +   L+ K+G FR  L GKRV+++ R+VI
Sbjct: 321  ECWDYMTLQIAIYINGDVPGLKGEAGKPTRSLVSRLKGKQGRFRGNLSGKRVDFSGRTVI 380

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLS--T 453
            SPDP L ++E+ +P   A  +TYPE VT +N+  L+  + NG    PGA   + K S  T
Sbjct: 381  SPDPNLRIDEVAVPELVAKNMTYPEIVTRYNLEYLQKLVRNGINKWPGAKKVIKKDSGLT 440

Query: 454  MRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHK 513
            + L  + K   +I ++L                   G +V RHL DGD+ L NRQP+LHK
Sbjct: 441  ISLKHSAKSLDTISKQLQI-----------------GDLVERHLVDGDIALYNRQPSLHK 483

Query: 514  PSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQY 573
             SI++H V+V +  +T RM+   C+ YNADFDGDEMN+H PQ E +R+EA  ++   N  
Sbjct: 484  LSILSHFVKV-RPYRTFRMNECVCNPYNADFDGDEMNLHIPQTEEARSEAMELMGVKNNL 542

Query: 574  VRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL-LYSSGVSSSGLGSFTGKPGQR 632
            V P NG+P+   IQD I +A +L+ KD F +R  F Q+ LY  G  +     F   P   
Sbjct: 543  VTPKNGEPIIGAIQDFISAAYVLSSKDNFFDRRSFTQICLYMLGPET----RFDLPP--- 595

Query: 633  VLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 692
                          PAI KP+ +WTGKQV   ++      RP                  
Sbjct: 596  --------------PAILKPQMMWTGKQVFNILM------RP------------------ 617

Query: 693  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL 752
                      K+D  K++                ++    E K  +  + K+ + ++  L
Sbjct: 618  ---------NKDDPVKVN----------------IDAACREFKAPKDGQPKDLDPNDGWL 652

Query: 753  LIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTC 809
            +I  ++++ GV+DK+         + + +   +G   A   ++ LS+L   +    GF+ 
Sbjct: 653  VIRNSEIMCGVMDKSTIGSGKKDNVFYIMLRDFGPPAAAEGMNRLSKLCARWFTNVGFSI 712

Query: 810  GVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGD 869
            G+ D+          +  +    E+ +R +         A  D +  + +  K  +  G 
Sbjct: 713  GITDVY-------PSERLVQTKNELVERAY---------AACDEVIAQYKAGKLEKLPGC 756

Query: 870  AAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK-NWISLMTTSGAKGSKVNFQQIS 928
              +   + +++  L+K      + +   E  +K   K N   +M TSG+KGS +N  Q+ 
Sbjct: 757  DELQTMESQVSGILSK------VRQQAGEECIKQLSKYNAPLIMATSGSKGSSINVSQMV 810

Query: 929  SHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGRE 988
            + +GQQ +  +RV      +TLP F      P + GF+ + F + L P E++FH M+GRE
Sbjct: 811  AVVGQQIISSERVQDGFQDRTLPHFPKNARHPPSKGFVRNSFFSSLSPTEFFFHAMSGRE 870

Query: 989  GLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDG---VDVHQTS 1045
            GL+DTAVKT+ +GY+ R L+K+LE L   YD ++R +  SIVQF YG D    VD+   +
Sbjct: 871  GLIDTAVKTAETGYMSRRLMKSLEDLSAKYDGTIRTSSASIVQFSYGGDDLDPVDMEGKA 930

Query: 1046 FISKFD-----ALAARERGRGRG-----------------RNKFCDKGSHTFVMGRNQEM 1083
                FD     A+A       RG                 R ++  KG    + G  +++
Sbjct: 931  KPVHFDRTYNHAMAVTHNNNERGLQPSEIRAITEELLSEERKRYVRKG----LFG--EDL 984

Query: 1084 IYKKCS----GQLDASNAYIMELPDALKDNA---EKFADKFLSNEMAK------------ 1124
             YK  S     QL+++ A++  + + ++  A   EK  D  LS++ A+            
Sbjct: 985  PYKDDSDYGTDQLESARAFLDSIQEHIEKKAVAMEKAMDSALSDQEARMALDHVGKLSEG 1044

Query: 1125 --QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
              + F+K    K+  +  +PG  VG + +QS+GEP TQMTL TFH AG G + +T G+PR
Sbjct: 1045 SLRYFIKSCLFKYEKAKIEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVGNLALTQGVPR 1104

Query: 1183 LQEILTIASKDIKTPVITCPLLV 1205
            ++EI+  ASK+I TPVITC L +
Sbjct: 1105 IKEIIN-ASKEISTPVITCHLAI 1126



 Score = 45.1 bits (105), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C TCG     C GHFGH+ LV+P ++   F  +  +L+ IC  C      +A RR   K 
Sbjct: 76  CLTCGLGHKDCNGHFGHVKLVLPAFHIGYFKRVIGILQVICKECSTILLPEAERRAFLKE 135

Query: 58  VRKLEL 63
           +R+  L
Sbjct: 136 MRRPRL 141


>gi|242807568|ref|XP_002484983.1| DNA-directed RNA polymerase III largest subunit, putative
            [Talaromyces stipitatus ATCC 10500]
 gi|218715608|gb|EED15030.1| DNA-directed RNA polymerase III largest subunit, putative
            [Talaromyces stipitatus ATCC 10500]
          Length = 1441

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 307/980 (31%), Positives = 470/980 (47%), Gaps = 174/980 (17%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVM-EHPQTVLLSKVLQANIYLANAYVNQPDNAKV--IV 338
            F    +  PP   R PS   D    E   T  L  ++Q+NI L N   N    A V  ++
Sbjct: 266  FLWQYIPAPPNCIR-PSVSQDGASNEDDLTAKLGDIVQSNITLRN---NLRKGAPVPTLM 321

Query: 339  ARW--MNLQQSVNVLFDGKNAAGQRDMAS-GICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
              W  M LQ ++ +  D     G+    +  +   L+ K+G FR  L GKRV+++ R+VI
Sbjct: 322  ECWDYMTLQIAIYINGDVPGLKGEAGKPTRSLVSRLKGKQGRFRGNLSGKRVDFSGRTVI 381

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMR 455
            SPDP L ++E+ +P   A  +TYPE VT +N+  LR  + NG    PGA   + K S + 
Sbjct: 382  SPDPNLRIDEVAVPELVAKNMTYPEIVTRYNLEYLRKLVRNGINKWPGAKKVIKKDSGLT 441

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
            +           R LD    A +Q G          +V RHL DGD+ L NRQP+LHK S
Sbjct: 442  ISLKHS-----ARSLDLI-AAQLQIGD---------LVERHLVDGDIALYNRQPSLHKLS 486

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            I++H V+V +  +T RM+   C+ YNADFDGDEMN+H PQ E +R+EA  ++   N  V 
Sbjct: 487  ILSHFVKV-RPYRTFRMNECVCNPYNADFDGDEMNLHIPQTEEARSEAMELMGVKNNLVT 545

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL-LYSSGVSSSGLGSFTGKPGQRVL 634
            P NG+P+   IQD I +A +L+ KD F +R  F Q+ LY  G  +     F   P     
Sbjct: 546  PKNGEPIIGAIQDFISAAYMLSSKDNFFDRRSFTQICLYMLGPET----RFDLPP----- 596

Query: 635  ISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFN 694
                        PAI KP+ LWTGKQV   ++      RP                    
Sbjct: 597  ------------PAILKPQMLWTGKQVFNILM------RP-------------------- 618

Query: 695  ADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLI 754
                    K+D  K++      + K+ K     +G+P           K+ + ++  L+I
Sbjct: 619  -------NKDDPVKVNIDAACREFKAPK-----DGQP-----------KDLDPNDGWLVI 655

Query: 755  YKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
              ++++ GV+DK+         + + +   +G   A   ++ LS+L   +    GF+ G+
Sbjct: 656  RNSEIMCGVMDKSTIGSGKKDNVFYIMLRDFGPPAAAEGMNRLSKLCARWFTNVGFSIGI 715

Query: 812  DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAA 871
             D+    +K  + KN      E+ +R +         A  D +  K +  K  +  G   
Sbjct: 716  TDVY-PSEKLVQTKN------ELVERAY---------AACDEVIAKYKAGKLEKLAGCDE 759

Query: 872  VAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHL 931
            +   + +++  L+K     V  +   E + + +  N   +M TSG+KGS +N  Q+ + +
Sbjct: 760  LQTMESQVSGILSK-----VRQQAGEECIAQLSKYNAPLIMATSGSKGSSINVSQMVAVV 814

Query: 932  GQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLV 991
            GQQ +  +RV      +TLP F      P + GF+ + F + L P E++FH M+GREGL+
Sbjct: 815  GQQIISSERVQDGFQDRTLPHFPKNARHPPSKGFVRNSFFSSLSPTEFFFHAMSGREGLI 874

Query: 992  DTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDG---VDVHQTSFIS 1048
            DTAVKT+ +GY+ R L+K+LE L   YD ++R +  SIVQF YG D    VD+   +   
Sbjct: 875  DTAVKTAETGYMSRRLMKSLEDLSAKYDGTIRTSSASIVQFSYGGDDLDPVDMEGKAKPV 934

Query: 1049 KFD-----ALAARERGRGRG-----------------RNKFCDKGSHTFVMGRNQEMIYK 1086
             FD     A+A       RG                 R ++  KG    + G  +++ YK
Sbjct: 935  HFDRTYNHAMAITHNNNERGLEPSEIRTITEELLAKERQRYVRKG----LFG--EDLPYK 988

Query: 1087 KCS----GQLDASNAYIMELPDALKDNA---EKFADKFLSNEMAK--------------Q 1125
              S     Q +++ A++  + + ++  A   EK  +  LS E A+              +
Sbjct: 989  DDSDYGTDQFESARAFLDSIQEHIEKKAVEMEKAINSALSGEEARMALDHVGKLSERSLR 1048

Query: 1126 DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1185
             F+K    K+  +  +PG  VG + +QS+GEP TQMTL TFH AG G + +T G+PR++E
Sbjct: 1049 YFIKSCLSKYEKAKIEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVGNLALTQGVPRIKE 1108

Query: 1186 ILTIASKDIKTPVITCPLLV 1205
            I+  ASK+I TPVITC L V
Sbjct: 1109 IIN-ASKEISTPVITCHLAV 1127



 Score = 44.7 bits (104), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C TCG     C GHFGH+ LV+P ++   F  +  +L+ IC  C      +A RR   K 
Sbjct: 77  CLTCGLGHKDCNGHFGHVKLVLPAFHIGYFKRVIGILQVICKECSAILLPEAERRAFLKE 136

Query: 58  VRK 60
           +R+
Sbjct: 137 MRR 139


>gi|440296621|gb|ELP89407.1| DNA-directed RNA polymerase III subunit RPC1, putative [Entamoeba
            invadens IP1]
          Length = 1381

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 287/978 (29%), Positives = 458/978 (46%), Gaps = 171/978 (17%)

Query: 267  DMQQQGFGKKAGHSIFFLGVVLVPPIKFR--LPSKGGDSVMEHPQTVLLSKVLQANIYLA 324
            D++   F   A      L  V VPP+  R  +   GG++  E   T  L +V++ N  + 
Sbjct: 255  DIEAMDFSPDAPPEKLILTSVPVPPLTIRPSVSMDGGNASNEDDLTTQLKEVVECNTKII 314

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMA--SGICQLLEKKEGLFRQKL 382
             A + +  +       W  L  +V+++ +      +        +CQ L+ K G FR  L
Sbjct: 315  -ALMEKGYSPYQFYEAWDQLTVAVSLIINSDLPMCEEKGKPLRSLCQRLKGKHGRFRGNL 373

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
            +GKRV+++ R+VISPDP L V ++G+P   A+ LTYPERVT +N+ K+R  + NG + +P
Sbjct: 374  LGKRVDFSGRTVISPDPNLDVEQLGVPQLMAITLTYPERVTRYNIEKMRQLVRNGPDTYP 433

Query: 443  GATHYL----DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQ 498
            G    +    ++ S M  P   +MR    ++L                   G++V RHL+
Sbjct: 434  GCNGIIMIDGNRRSMMIKP---EMREKFAKELRI-----------------GEIVERHLE 473

Query: 499  DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
            DGD+VL NRQP+LH+ SIM H+ +VL   +T+R +   C+ YNADFDGDEMN+H PQ E 
Sbjct: 474  DGDIVLFNRQPSLHRISIMCHIAKVLPW-RTMRFNECVCTPYNADFDGDEMNLHVPQTEE 532

Query: 559  SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
            +RAE   ++++      P  G  + +  QD +  + LLT KD  +  +E   +L+S    
Sbjct: 533  ARAECLMLMHSAKNLQTPRTGQMIIAETQDFLTVSFLLTAKDFVVTEEEM--MLWSCWFH 590

Query: 619  SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVV 678
            ++G+                  E+    PA  KP+ LWTGKQ+    L    R  P F V
Sbjct: 591  NAGV------------------EIRLPTPAYLKPKKLWTGKQLYGLAL----RPNPNFGV 628

Query: 679  ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSG----KKKEVVEGKPGEE 734
            +     P   +                    SK  K    K G    K  ++V G+  + 
Sbjct: 629  DICLDAPSKNY--------------------SKEGKWMCMKDGWICFKHSQLVCGQIDKA 668

Query: 735  KEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSAL 794
                 NKS                              GL H +   YG   +  +++ +
Sbjct: 669  IIGSGNKS------------------------------GLFHLILRDYGLLDSAKMMAHI 698

Query: 795  SRLFTVFLQMHGFTCGVDD----LLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAE 850
            SR    FL  +GF+ G+ D    L + + KE          ++  K  +    E++ G  
Sbjct: 699  SRFCARFLGDYGFSIGISDVTPSLSLTRMKEELVGEGYAKCDQFIKSYNDGKQEIQPG-- 756

Query: 851  IDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS 910
                   S  E+ +    ++ +        SQ+ +      I+EL  +        N   
Sbjct: 757  -------STPEQTLEALLNSEL--------SQVRERAGKRCIDELRCD--------NSPL 793

Query: 911  LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRF 970
            +M   G+KGS +N  Q+ + +GQQ + G RV      ++LP F      P+A GF+ + F
Sbjct: 794  VMALCGSKGSVINISQMIACVGQQTVNGGRVSDGFISRSLPHFPLHSRTPQAKGFVKNSF 853

Query: 971  LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIV 1030
             TGL   E++FH M GREGLVD+AVKT+ +GY+QR L+K LE L + YD +VR A  +++
Sbjct: 854  FTGLNATEFFFHTMGGREGLVDSAVKTAETGYMQRRLMKALEDLHVHYDGTVRSAGMTVI 913

Query: 1031 QFCYGEDGVDVHQTSF----ISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYK 1086
            +F YG+DG+D  +       I+    LA  ++ +         K    ++  +  +  YK
Sbjct: 914  EFKYGDDGLDPLKVECDIDPINYESVLANLQQHQ---------KTEDLYITPKTFDSYYK 964

Query: 1087 KC-----------SGQLDASNAYIMELPDALKDNAEKFADKFLSNEMA------KQDFLK 1129
            +              QLD    ++ +    + +    +++K + + +        + F+K
Sbjct: 965  EALTGVQIVTDLWKSQLD---VFMEKKKSEMSEVYTHYSEKSVRDGLCGITVDTMKKFVK 1021

Query: 1130 LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTI 1189
            + + K + ++ +PG PVG LA QS+GEPSTQM L TFH AG   MN+ LG+PR++EI+  
Sbjct: 1022 VCEQKGLRNICEPGTPVGALAGQSMGEPSTQMVLKTFHFAGVASMNIALGVPRIKEIIN- 1080

Query: 1190 ASKDIKTPVITCPLLVGK 1207
            ASK I+TP++T  L+  K
Sbjct: 1081 ASKKIQTPIVTAKLVNSK 1098



 Score = 46.2 bits (108), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           CKTCG+    C GHFG I+L +PV++   F  +  +L+ +C  C+    +  E E  +++
Sbjct: 91  CKTCGKNVDECCGHFGEINLALPVFHIGFFRPIIQVLQCVCKNCNRLLLTDEEREYYLKR 150

Query: 61  L 61
           +
Sbjct: 151 M 151


>gi|328854434|gb|EGG03566.1| hypothetical protein MELLADRAFT_75289 [Melampsora larici-populina
            98AG31]
          Length = 1725

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 218/499 (43%), Positives = 290/499 (58%), Gaps = 52/499 (10%)

Query: 748  SEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH 805
            SE+ +      ++ GVIDK+Q   + YGLVH+V +LYG+  AG LLS  SRLFT +LQ  
Sbjct: 796  SEDTVQFDAGYMISGVIDKSQIGASPYGLVHSVHDLYGAEVAGRLLSIFSRLFTKYLQHR 855

Query: 806  GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI---KLKSEIEK 862
             FTC +DDL +       R   L+ +   G+R  L  + L +     P     L++ +E+
Sbjct: 856  AFTCRMDDLFLTGHGNAIRSRLLNETSVRGRRATLSMVGLSEEEVSTPQGKKDLQARLEE 915

Query: 863  AMRGGGDAAVAYFDMKMTSQLNKHT------SSSVINELLSEGLLKPTGKNWISLMTTSG 916
             +R          DMKM +  N +        + + N+ L  GL KP   N + +MT SG
Sbjct: 916  VLRD---------DMKMAALDNSYNVETSELKTKIDNQCLPAGLYKPFPWNNMQMMTGSG 966

Query: 917  AKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRP 976
            AKG+ VN  QIS  LGQQ LEG+RVP MVSGKTLPSF  ++ APRAGGF+  RFLTG+RP
Sbjct: 967  AKGTTVNASQISCLLGQQALEGRRVPVMVSGKTLPSFKAFETAPRAGGFVAQRFLTGIRP 1026

Query: 977  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE 1036
            QEYYFHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE +++ YD++VR++D S++QF YG+
Sbjct: 1027 QEYYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIRVHYDHTVRNSDSSVIQFHYGD 1086

Query: 1037 DGVDV--------------HQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQE 1082
            D +DV              ++ S I ++       R  G       D        G NQ 
Sbjct: 1087 DSLDVTKQKHLYQFEFSLLNRASLIERYQPTEILGRLDGETATNHADSIIKAKKSGTNQS 1146

Query: 1083 M-----------IYKKCSGQ--LDASNAYIMELPDALKDNAEKFADKFL----SNEMAKQ 1125
            +           +Y   + +   +A N Y +E P  L    +K+   +     SNE+   
Sbjct: 1147 LPLPTMSIYSPTLYFGSTSEKFTEAVNKYKVENPKRLLRVKKKYRADWPAYVNSNELIPT 1206

Query: 1126 DFLK-LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
            DF + L++ +F+  +  PGE VGLLASQ VGEPSTQMTLNTFH AG G  NVTLGIPRL+
Sbjct: 1207 DFFRSLMQIRFMKGIVDPGEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLR 1266

Query: 1185 EILTIASKDIKTPVITCPL 1203
            EI+  AS  IKTP +  P+
Sbjct: 1267 EIVMTASTKIKTPTMKFPI 1285



 Score =  346 bits (887), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 193/483 (39%), Positives = 273/483 (56%), Gaps = 77/483 (15%)

Query: 242 LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKK------AGHSIFFLGVVLVPPIKFR 295
           +L  + +  +  L++NE E+C  + D       K+      A   +FFL V+ VPP KFR
Sbjct: 312 ILAEEARAHLRLLFQNESEICDLLYDTHGPAMQKENQSNSSATADMFFLDVIAVPPTKFR 371

Query: 296 LPSKGGDSVMEHPQTVLLSKVLQANIYLAN------AYVNQPDNAKV------------- 336
             +  G   +E PQ +LL  +L   + + +      A   +P N  +             
Sbjct: 372 PAAVMGGQTLEAPQNLLLGAILMQTVKIRDLNEKLAAVSEKPPNGALAQALLIVQKEQQK 431

Query: 337 -----IVARWMNLQQSVNVLFDGKN----AAGQRDMASGICQLLEKKEGLFRQKLMGKRV 387
                I+   + +Q +VN L D        A  +    G+ Q+LEKKEGLFR  +MGKRV
Sbjct: 432 KLYSQILEGCIGMQIAVNSLLDSNRNPTVMAKGKLPPQGVKQILEKKEGLFRMNMMGKRV 491

Query: 388 NYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY 447
           NYA RSVISPD  +  NEIG+PP FA +LT+PE VT  N  K+   + NG  +HPGA   
Sbjct: 492 NYAARSVISPDINIETNEIGVPPVFAKKLTFPEFVTAHNFDKMHKLVCNGPHVHPGAVFV 551

Query: 448 LDKLSTMRLPPNKKMRISIGRKLDTSRGAI----VQPGKDSDNEFE-------------- 489
            D   TM         +++ R    SR A+    +Q   ++D   +              
Sbjct: 552 EDDDGTM---------VALDRMDGESRKALANTLLQTSSNADRSNKNPRPDIGLPPTRTP 602

Query: 490 --GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGD 547
             GK V+RHL DGD++++NRQPTLHKPS+M H  R+LKGEKT+RMHYANC++YNADFDGD
Sbjct: 603 MIGKRVHRHLDDGDILILNRQPTLHKPSMMCHRARILKGEKTIRMHYANCNSYNADFDGD 662

Query: 548 EMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDE 607
           EMN+HFPQ+ ++++EA  I N +NQY+ P++G+PLR LIQDH+VS   +T KDTF +R++
Sbjct: 663 EMNMHFPQNLIAQSEARTIANNDNQYLVPTSGNPLRGLIQDHVVSGVWMTNKDTFFSRED 722

Query: 608 FCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLN 667
           + Q++Y +    +    +TG  GQ          VL + PAIWKP PLWTGKQ+I+ +L 
Sbjct: 723 YYQIIYGALRPEN---EYTGG-GQ----------VLTVSPAIWKPRPLWTGKQIISTILK 768

Query: 668 HIT 670
           +IT
Sbjct: 769 NIT 771



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 33/50 (66%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
           C+TC      CPGHFGHI+L VPV++PL     + LL+  CF CHHF AS
Sbjct: 63  CRTCRLSNTQCPGHFGHIELNVPVFHPLFMTHAFHLLRGTCFHCHHFLAS 112


>gi|350590849|ref|XP_003483150.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sus scrofa]
          Length = 1092

 Score =  370 bits (951), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 293/992 (29%), Positives = 456/992 (45%), Gaps = 171/992 (17%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNGA-AAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS-T 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHIN-------------------------------------- 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGR 1062
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+         +F  LA  +     
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV----EFQNLATLKPSNKA 915

Query: 1063 GRNKFCDKGSHTFVMGRN-QEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNE 1121
               KF    ++   + R  QE + K         N    E  + ++++ E     F + +
Sbjct: 916  FEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREF-ERMREDREVLRVIFPTGD 974

Query: 1122 ---MAKQDFLKL------VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRG 1172
               +   + L++      +        A PGE VG LA+QS+GEP+TQMTLNTFH AG  
Sbjct: 975  SKVVLPCNLLRMIWNAQKIXXXXXXXXAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVS 1034

Query: 1173 EMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
              NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1035 AKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1065



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|342887287|gb|EGU86828.1| hypothetical protein FOXB_02655 [Fusarium oxysporum Fo5176]
          Length = 1676

 Score =  370 bits (949), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 256/718 (35%), Positives = 369/718 (51%), Gaps = 78/718 (10%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC   Q  CPGH GHI L VPVY+P+  +  Y LLK  C +C  F+  ++E+ K V +
Sbjct: 62  CTTCNLNQATCPGHAGHIQLPVPVYHPVFMDQAYRLLKAACVYCKGFRLPQKELHKYVCQ 121

Query: 61  LELIIKGDIIAAKSL----DLDLPSESSN-----PEDSDVSNKSSCSMVT-PRGNYDN-- 108
           L+L+  G I  A  +    D +L  E  +      E  +    +S   VT  R  Y +  
Sbjct: 122 LKLLQHGLIQEAHVVGAIGDNELAIELGDFSELESEAEEEGGTNSIDNVTRARDKYVDKC 181

Query: 109 -----VRNLKPQEWTSLQFAEAKLALLQFLKIETTK---CGNCKAKNPRISKPTFGWIHM 160
                ++    +       +E +  +++    E TK   C +C   +P   K  F  +  
Sbjct: 182 LSGIKIKRGDTKRGKHEGSSEMRREIIKEFLAEITKRRVCASCGGISPSYRKDRFVKVFE 241

Query: 161 NGMPHAD----IRANLIRGCNLGETFSGGEEEKDLGASSD-----VDAP--ETHSFNGTF 209
             +   D     + N  +   +        ++K  G SSD     V +P  ET   NG  
Sbjct: 242 RSLSDKDKAKMAQKNFKQADAMARVHQAATKQKPDGYSSDEGVADVASPTRETSRVNGDV 301

Query: 210 PGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQ 269
                         + + P  +          +   +V+  + +L+  E EL S + + +
Sbjct: 302 TDQDTEMIDADTASTSSSPQRY----------ISAMEVRARLNELFTKEQELVSLLYNAK 351

Query: 270 QQG-FGKKAGHSIFFLGVVLVPPIKFRLPSKGGDS-VMEHPQTVLLSKVLQANIYLANAY 327
                  K    +FFL  +LVPP ++R  ++ G+S + E  Q  L   +L+    +A  +
Sbjct: 352 PPTRSSTKVTPDMFFLTTILVPPNRYRPEARTGESEISEAQQNSLYKNILRGCGTIARLH 411

Query: 328 VN-QPDNAKV--IVARWMNLQQSVNVLFD-GKN----AAGQRDMASGICQLLEKKEGLFR 379
              Q + A V  +      LQ+SVN L D  KN    AA +R+   GI Q LEKKEGLFR
Sbjct: 412 RELQEEKADVNRMHQASAELQESVNALIDKNKNPVQGAAAKRN-EDGIKQKLEKKEGLFR 470

Query: 380 QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
           + +MGKRVNYA RSVISPDP +  NEIG+PP FA +LTYPE VT  N   ++ ++ING +
Sbjct: 471 KNMMGKRVNYAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTSHNFRDMQQAVINGVD 530

Query: 440 IHPGATHYLDKLSTMRLPPNKKM--RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
             PGA    ++   +    NK +  R+S+  +L       + P   +      K VYRHL
Sbjct: 531 KWPGAFAIENENGQIVNLRNKSVDDRVSLANQL-------LAPTSSNAARTRNKKVYRHL 583

Query: 498 QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            +GDVVL+NRQPTLHKPSIM H VRVL GEKT+RMHYANC+TYNADFDGDEMN+HFPQ+E
Sbjct: 584 TNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPQNE 643

Query: 558 VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
           V+RAEA  I + ++QY+  + G PLR LIQDHI  +  L  +DTF  + ++ QL+Y++  
Sbjct: 644 VARAEALQIADTDHQYLSGTAGKPLRGLIQDHISVSVALCNRDTFFTKGDYQQLVYNALR 703

Query: 618 SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPP 675
             SG        G+R+ +         + PA+ +P   WTGKQVIT +L ++   +PP
Sbjct: 704 PESG-----HIVGERIEL---------VAPAVIRPVARWTGKQVITTILKNM---QPP 744



 Score =  353 bits (905), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 210/487 (43%), Positives = 290/487 (59%), Gaps = 38/487 (7%)

Query: 748  SEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
            SEE  +++++ + + G++DK+Q   +  G++H V E+YG   AG LLS+L RL T +L M
Sbjct: 766  SEEGTVVFQDGEFITGILDKSQIGPSSGGVIHAVHEIYGPAVAGKLLSSLGRLLTRYLNM 825

Query: 805  HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE-DGAEIDPIKLKSEIEKA 863
              F+CG+DDL +  + E+ R+  L  ++ +G +V    + LE D    DP+ L+   E  
Sbjct: 826  RAFSCGMDDLRLTPEGEQARREALVPADSVGLKVASSYVSLEQDPGPRDPLLLERLEEVL 885

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 D+     D+ M   L+K T   +    +  GL K    N +  MTTSGAKGS+VN
Sbjct: 886  R---DDSKQEGLDLLMKEGLSKITDK-IQTATMPVGLEKAFPFNQMQAMTTSGAKGSRVN 941

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
               IS +LGQQ LEG+RVP MVSGK+LP F+P++   RAGG+I+ RFLTG+RPQEYYFH 
Sbjct: 942  ASLISCNLGQQVLEGRRVPIMVSGKSLPCFNPFETHARAGGYIVQRFLTGIRPQEYYFHH 1001

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGL+DTAVKTSRSGYLQRC+IK +E L ++YD +VRDADGS++QF YGEDG+DV +
Sbjct: 1002 MAGREGLIDTAVKTSRSGYLQRCVIKGMEGLTVAYDTTVRDADGSMIQFLYGEDGLDVSK 1061

Query: 1044 TSFISKFDAL---AARERGRGRGRNKFCDK-GSHTFVMGRNQEMIYKKC----------- 1088
              +++ F  +      E  + R      D+ G H   + +  +   K             
Sbjct: 1062 QKYLTDFSFILENVTSEASQLRYDPSVGDRLGMHRDAITKYMKKALKHTNIKDPKAQDPI 1121

Query: 1089 SGQLD--------------ASNAYIMELPDAL-KDNAEKFADKFLSNEMAKQDFLKLVKH 1133
            SG  +              A  +YI E  D L +D ++K         + K++   L   
Sbjct: 1122 SGLFNPATTAFATSENFYKAMTSYIKENKDGLVRDKSDKNKLALSRVSLNKKNAEMLFAM 1181

Query: 1134 KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKD 1193
            K++ SL +PGE VG++A QSVGEPSTQMTLNTFHLAG    NVTLGIPRL+EIL  AS  
Sbjct: 1182 KYLRSLVEPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRLREILMTASDK 1241

Query: 1194 IKTPVIT 1200
            I TP ++
Sbjct: 1242 ISTPAMS 1248


>gi|145492039|ref|XP_001432018.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399125|emb|CAK64620.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1360

 Score =  369 bits (948), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 281/850 (33%), Positives = 410/850 (48%), Gaps = 134/850 (15%)

Query: 366  GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPW 425
            GI Q L+ K G  R  L GKR  +  RSVISPDP LA++++ IP + A  LT PE VT  
Sbjct: 306  GIYQRLKGKRGRLRGNLSGKRAEFTARSVISPDPNLAIDQVTIPQHIACILTVPETVTAL 365

Query: 426  NVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSD 485
            N+ K+RD + NG  I+PGA     KL  +        R  +  KL               
Sbjct: 366  NIKKMRDYVQNGPSIYPGAKFV--KLGGVNYNLQFARRAHLAYKLKI------------- 410

Query: 486  NEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
                G +V RHL   D+V+ NRQP+LH+ S+MA   RV K   TLR +   C+ +NADFD
Sbjct: 411  ----GDVVDRHLLSEDIVIFNRQPSLHRISMMAFRARVDKWH-TLRFNECVCTPFNADFD 465

Query: 546  GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
            GDEMN+H PQ   +R+EA  +++         +G+ L  L+QD + +A L+T KD F +R
Sbjct: 466  GDEMNIHLPQTYEARSEALILMDVKKNLKTIKSGESLVCLLQDFLTTAWLITNKDVFYSR 525

Query: 606  DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
            ++F Q  + +  S S                 +EQ  LP  P I KP+ LWTGKQVI A+
Sbjct: 526  EQFMQ--FCAAFSDS-----------------NEQIDLPA-PTILKPKQLWTGKQVINAL 565

Query: 666  LNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKE 725
            L          V  R         KTR   + ++      KGKL               +
Sbjct: 566  L----------VPNR---------KTRLVLNLEAKESNAFKGKL---------------D 591

Query: 726  VVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYG 783
             +   PG+                  ++  K +LV G I K     +  GL + +     
Sbjct: 592  YLWMDPGDGY----------------VVFDKCELVCGNIGKKVLGASKLGLFYALIRDNS 635

Query: 784  SNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL 843
            +  A +++   ++L + ++  +G T G+ D++  K    +       S    K      +
Sbjct: 636  TQIAASVMQRFAKLSSRWISHYGMTIGIGDVMAPKSLIEQIHQSTEQSYLQCKHYQRSLI 695

Query: 844  ELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKP 903
            + + G  ++   L++++ K +                S + +   S    +L S+     
Sbjct: 696  DADPGLTVEQ-TLEAKVNKTL----------------SDVREQVGSKCQEQLKSD----- 733

Query: 904  TGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAG 963
               N + +M   GAKGS VN  Q+   +GQQ + GKRVP   +G+TLP F  +   P+A 
Sbjct: 734  ---NKVLIMYLCGAKGSNVNVAQMIGCVGQQVISGKRVPEGFTGRTLPHFKDYILHPKAK 790

Query: 964  GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
            GF+ + F TG+   E+YFH MAGREGL DTAVKT+ +GY+QR L+K LE L I+YD +VR
Sbjct: 791  GFVKNSFYTGMDAIEFYFHNMAGREGLTDTAVKTATTGYMQRRLVKMLEDLHIAYDLTVR 850

Query: 1024 DADG-SIVQFCYGEDGVD---VHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGR 1079
              D   IVQF YGEDG+D   V   + + K   L        R +N+      H  +   
Sbjct: 851  SCDTKEIVQFRYGEDGLDPLAVEDANEVIKLQNLLTNSFTVLR-KNQILLNKEHMLIKLD 909

Query: 1080 NQEMI----YKKCSGQLDASNAYIMELPDAL-KDNAEKFADKFLSNEMAKQDFLKLVKHK 1134
               MI    +KK     +A+     +   AL K   ++ ++K L      Q F++    +
Sbjct: 910  ELFMIIEERHKKFLENYEATYEKEKKRVQALFKSTNQQVSEKQL------QWFIRSWMER 963

Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
            F+  +  PG  VG + SQS+GEP+TQMTL TFH AG   M++T G+PRL EI+  ASK+I
Sbjct: 964  FLTMVMAPGTSVGPITSQSIGEPATQMTLKTFHSAGVAGMSITQGVPRLNEIIN-ASKEI 1022

Query: 1195 KTPVITCPLL 1204
            KTP I   L+
Sbjct: 1023 KTPQINVKLI 1032



 Score = 43.5 bits (101), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 30/51 (58%)

Query: 11  CPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRKL 61
           CPGHFG+I L +P+Y+   F  +   LK +C+ C   + +  E+ +  +K+
Sbjct: 74  CPGHFGYIPLQLPIYHLGFFTHVVKCLKCLCYKCGQVRLTPDEINQLTQKM 124


>gi|19112298|ref|NP_595506.1| DNA-directed RNA polymerase III complex large subunit Rpc1
            (predicted) [Schizosaccharomyces pombe 972h-]
 gi|9297042|sp|O94666.1|RPC1_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit rpc1; Short=RNA
            polymerase III subunit C1; AltName: Full=DNA-directed RNA
            polymerase III largest subunit; AltName: Full=RPC158
 gi|4467280|emb|CAB37604.1| DNA-directed RNA polymerase III complex large subunit Rpc1
            (predicted) [Schizosaccharomyces pombe]
 gi|76782169|gb|ABA54855.1| RNA polymerase III largest subunit Rpc1 [Schizosaccharomyces pombe]
          Length = 1405

 Score =  369 bits (946), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 299/977 (30%), Positives = 459/977 (46%), Gaps = 183/977 (18%)

Query: 287  VLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQ 346
            V  PP+  R       +  E   TV +++++  +  L  A +++      ++ +W  +Q 
Sbjct: 251  VPAPPVCIRPSVAQEGATTEDDLTVKITEIIWTS-SLIRAALSKGTPISNLMEQWEFMQL 309

Query: 347  SVNVLFDGKNAAGQR--DMAS----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
            S+  ++      G R  DM S    G CQ L+ K+G FR  L GKRV+++ R+VISPDP 
Sbjct: 310  SI-AMYINSEMPGLRPSDMPSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPN 368

Query: 401  LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK 460
            L ++++ +P   A  LT+PERVT  N   L+D I NG ++HPGA + +D+ S        
Sbjct: 369  LRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPGANYVIDRESGF------ 422

Query: 461  KMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHV 520
            K  +  G +            + +D+   G +V RHL D DVVL NRQP+LHK SIMAH+
Sbjct: 423  KRFLRFGNR-----------NRIADDLKIGDIVERHLHDNDVVLFNRQPSLHKLSIMAHL 471

Query: 521  VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGD 580
            V+V +  +TLR +   C  YNADFDGDEMN+H PQ E ++ EA  ++   N  V P NG+
Sbjct: 472  VKV-RPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNNLVSPRNGE 530

Query: 581  PLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQ 640
            P+ +  QD I +A LL+ KDTFL+R            S S +  +        ++  S  
Sbjct: 531  PIIAATQDFITAAYLLSLKDTFLDRK-----------SISNICCY--------MMDASTH 571

Query: 641  EVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSD 700
              LP  PAI KP  LWTGKQV T ++                  P  F K   N D    
Sbjct: 572  IDLPP-PAIIKPRCLWTGKQVFTVLMK-----------------PNRFSKVLVNLD---- 609

Query: 701  RKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLV 760
                     +KT    + KS                    K+ E    +  L+I  ++++
Sbjct: 610  ---------AKTRSFSRIKS--------------------KTPEMCPKDGYLMIRNSEII 640

Query: 761  RGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL-- 815
             GV+DK+   D     L + +   YG+  A   ++ LS++   FL   GF+ G++D+   
Sbjct: 641  AGVVDKSVVGDGKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGNRGFSIGIEDVQPG 700

Query: 816  --ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVA 873
              +   KE         S++   +     LE + G + +                    A
Sbjct: 701  KSLSSQKEILVNKAYATSDDFIMQYAKGILECQPGMDQE--------------------A 740

Query: 874  YFDMKMTSQLNKHTSSSVINELLSEGLLKPTG-KNWISLMTTSGAKGSKVNFQQISSHLG 932
              + K++S L+K      + + + E  +   G  N   +M T G+KGSK+N  Q+ + +G
Sbjct: 741  TLEAKISSTLSK------VRDDVGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVG 794

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ + GKRVP     ++LP FH     P A GF+ + F +GL P E+ FH ++GREGLVD
Sbjct: 795  QQIISGKRVPDGFQDRSLPHFHKNSKHPLAKGFVSNSFYSGLTPTEFLFHAISGREGLVD 854

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISY---------------------DYSVRDADGSIVQ 1031
            TAVKT+ +GY+ R L+K+LE L  +Y                     D +  + DG  V+
Sbjct: 855  TAVKTAETGYMSRRLMKSLEDLSSAYDGTVRSSNSDVVQFVYGDDGLDPTYMEGDGQAVE 914

Query: 1032 FCYG-----EDGVDVHQTSFISKFDALAARERGRGRGR-----NKFCDKGSHTFVMGRNQ 1081
            F            D H ++ +  ++ +    R     +     N+   +   TFV+    
Sbjct: 915  FKRTWIHSVNLNYDRHDSAMLP-YEIIDYVNRALDDPKFLTNCNRDFIETIRTFVI---- 969

Query: 1082 EMIYKKCSGQLDASN-AYIMELPDALKDNAEKFADKFLS-------------NEMAKQDF 1127
            E I K  +   +  + A ++E PD + D  +   D+F                E   + F
Sbjct: 970  ENIAKYLASVRERRDLAPMLEEPD-MDDLDDMEGDEFAPVAKRKSVENIIRVTEKQLRSF 1028

Query: 1128 LKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 1187
            +     K++ +  +PG  VG + +QS+GEP TQMTL TFH AG      TLG+PR++EI+
Sbjct: 1029 VDRCWEKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAA-QTTLGVPRIKEII 1087

Query: 1188 TIASKDIKTPVITCPLL 1204
              A+K I TP+IT  L+
Sbjct: 1088 N-AAKTISTPIITGQLI 1103



 Score = 47.4 bits (111), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG+    C GHFG++ L +PV++   F    T+L+ IC  C     S +E  + ++ 
Sbjct: 66  CATCGESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDCSSVLLSDQEKRQFLKD 125

Query: 61  L 61
           L
Sbjct: 126 L 126


>gi|145529488|ref|XP_001450527.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418149|emb|CAK83130.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1696

 Score =  368 bits (945), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 214/503 (42%), Positives = 295/503 (58%), Gaps = 65/503 (12%)

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
            ++LI  N+L+ G++DK Q    ADYG++H   ELYG    G LL+  +RLF  +LQ HGF
Sbjct: 806  QVLIKDNELLLGIVDKNQVGSGADYGMMHAFHELYGPKMTGQLLTGFARLFAAYLQYHGF 865

Query: 808  TCGVDDLLI--LKDKERE-------RKNHLHGSEEIGKRVHL-EALEL--------EDGA 849
            TCG+DDL++  L D++R        +K     +E  G    + E++ L        E+G 
Sbjct: 866  TCGMDDLIVDELHDEKRRVLIEENLKKGVRQAAEYCGYNSQIPESINLFNRSNFVFENGQ 925

Query: 850  EIDPIKLKS--------EIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSE--- 898
               P  L+         +I +A+R      +     +   Q  K   + V +E++     
Sbjct: 926  YNHPKYLQDVHYLQYDHQIYEALRQ--KILIEKHQEEALDQEYKKAMTKVTSEIVGSTLG 983

Query: 899  GLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDW 958
            GL K    N  S+MT +GAKGS VN  Q+S+ LGQQELEG+RVP M +G++LPSF P+D 
Sbjct: 984  GLQKLFPLNLFSMMTMTGAKGSNVNHSQVSALLGQQELEGRRVPLMPTGRSLPSFLPYDP 1043

Query: 959  APRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISY 1018
             PRAGG++ DRFLTGLRPQE++FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE L + Y
Sbjct: 1044 NPRAGGYVADRFLTGLRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLIVQY 1103

Query: 1019 DYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMG 1078
            D +VRD DGS++Q  YGEDG+D  +T ++ KF  LA                  H   + 
Sbjct: 1104 DLTVRDNDGSLIQLFYGEDGIDTTKTKYLEKFSFLA--------------QNNQHYKQLY 1149

Query: 1079 RNQEMI--YKKCSGQ---------LDASN------AYIMELPDALKDNAEKFADKFLSNE 1121
            R QEM   +K   G          ++A N      A  M++   + +  +K  ++    +
Sbjct: 1150 RVQEMKQHFKTLDGASVELENDTLMNAFNPSQNLGAVSMKVQSTMNEYLQKCQNELQQKK 1209

Query: 1122 MAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIP 1181
            ++ + F  L   +++ +L  PGE VG +A+QS+GEPSTQMTLNTFHLAG GE NVTLGIP
Sbjct: 1210 ISNKQFKSLANIRYLRALMHPGEAVGCVAAQSIGEPSTQMTLNTFHLAGHGEKNVTLGIP 1269

Query: 1182 RLQEILTIASKDIKTPVITCPLL 1204
            RL+EIL  A+K  KTP ++   L
Sbjct: 1270 RLREILMTATKKQKTPTMSLQFL 1292



 Score =  296 bits (759), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 152/339 (44%), Positives = 216/339 (63%), Gaps = 37/339 (10%)

Query: 336 VIVARWMNLQQSVNVLFDGKNAAGQRDMAS-GICQLLEKKEGLFRQKLMGKRVNYACRSV 394
            I+ +W+ LQ  V  L + + A  +++  + G+ QLLE+K+GLFR K+MGKRVN+ACRSV
Sbjct: 468 TIMQKWLELQDCVVGLVNSERAQNKQNRETPGVKQLLERKQGLFRMKMMGKRVNFACRSV 527

Query: 395 ISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLD---KL 451
           ISPDP L+ NE+G+P   A +L  PE V   N   + D I+NG  ++PGA ++ +   K+
Sbjct: 528 ISPDPLLSTNEVGVPTVLARKLIIPENVNSLNQQYVADLIMNGP-VYPGALYFQEDGKKI 586

Query: 452 STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
           +   L P ++M  +I R+L +                E K+V+RHL+ GDV+L NRQP+L
Sbjct: 587 ALEYLTPQQRM--AIVRELGSG---------------ENKVVWRHLRTGDVMLFNRQPSL 629

Query: 512 HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
           HKPSIM H+VRVL  E+T+R HYANC +YNADFDGDEMN+HF Q  + RAE YNI   + 
Sbjct: 630 HKPSIMGHIVRVLPNEQTIRFHYANCKSYNADFDGDEMNLHFIQSMIGRAEGYNIALNDY 689

Query: 572 QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
           QY+  +NG PLR L+QD IVS+  LT +DTFL + ++ QL+Y++  S             
Sbjct: 690 QYISQTNGKPLRELMQDMIVSSVFLTLRDTFLTKQQYMQLIYTAIWS------------- 736

Query: 632 RVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
             L  ++ Q++  L PAI KP+ LWTGKQ+I+ ++  I 
Sbjct: 737 --LFEKNSQKIELLQPAILKPKQLWTGKQLISNIIKIIV 773



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 80/197 (40%), Gaps = 45/197 (22%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCGQ    C GH GHI+L++PVYNP L N L +L++  C++CH  + ++   +     
Sbjct: 78  CVTCGQENMDCTGHVGHIELLLPVYNPYLVNQLMSLMRSKCYYCHKLRITKDRKKFYKNN 137

Query: 61  LELIIKGDIIAAKSLD------LDLPSESSNPED-------SDVS-----------NKSS 96
            +L+  G +I  K         L L  ++ N E+       +D S           NK  
Sbjct: 138 FKLLRLGRLIEMKKYQKLYMTKLRLNKQTKNAENRKQSITATDTSRKGSDHRKGSDNKMQ 197

Query: 97  CSMVTPRGNYDNVRNLKPQ---------------------EWTSLQFAEAKLALLQFLKI 135
           C   T    + ++ ++K Q                       TS    E K+   QF K 
Sbjct: 198 CDQETAPQEFLDIEDVKQQIQEILDILQVKKHQSEYIDGIHQTSHILQELKILTKQFFKD 257

Query: 136 ETTKCGNCKAKNPRISK 152
              KC +C   +P + K
Sbjct: 258 INKKCPHCNKVSPNVRK 274


>gi|307166498|gb|EFN60583.1| DNA-directed RNA polymerase III subunit RPC1 [Camponotus floridanus]
          Length = 1384

 Score =  368 bits (945), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 345/1248 (27%), Positives = 543/1248 (43%), Gaps = 282/1248 (22%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C TCG+    C GHFG+IDL +P+                 F   HF++        ++ 
Sbjct: 69   CTTCGKILQDCVGHFGYIDLALPI-----------------FHVGHFRS-------IIQI 104

Query: 61   LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
            L++I K          + L +E  N     + N        P   Y   + L+ Q W   
Sbjct: 105  LQMICKN------CSHILLTTEERNFYSQKIQN--------PNFGYLMRKGLRKQIWEKA 150

Query: 121  QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRAN--LIRGCNL 178
            +              + T C NCK  N  + K   G++ +    H +++    LI+   L
Sbjct: 151  K--------------KKTICPNCKENNGPVKKA--GFLKIVYERHKNLKKTDPLIQE-KL 193

Query: 179  GETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLF 238
             E     E++K+L +  D                                   +  + +F
Sbjct: 194  AELGPLMEQDKELKSIVD-----------------------------------QNHRTVF 218

Query: 239  SGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS 298
               L P+ V ++  ++  ++  +C  + +       K A  +   L  + VPP+  R PS
Sbjct: 219  DQCLFPNMVLELFTRIPASD--VCLLLMN------PKCAVPADLILSRIPVPPVCIR-PS 269

Query: 299  KGGDS---------VMEHPQTVLLSKVL--QANIYLANAYVNQPDNAKVIVARWMNLQQS 347
               D           M+  +  L+++V+  Q N+  AN YV Q D  ++    ++N + S
Sbjct: 270  TLSDIKAGTNEDYLTMKLSEISLINEVIYKQTNVN-ANKYVEQWDYLQLHCGLYINSEMS 328

Query: 348  VNVLFDGKNAAGQ-RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEI 406
                  G  A  Q +    GI Q L+ K+G FR  L GKRV+++ R+V            
Sbjct: 329  ------GIPAHMQPKKFGRGIVQRLKGKQGRFRGNLSGKRVDFSSRTV------------ 370

Query: 407  GIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISI 466
            G+P   A+ LTYPE+V   N+  +R  + NG  +HPGA +     ++     N ++ +  
Sbjct: 371  GVPIQIAMILTYPEKVNSSNIELMRALVRNGPNVHPGANYVQYNNNSQ----NNRVFLQY 426

Query: 467  GRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKG 526
            G +        ++  +D  N   G +V RHL+D D+VL NRQP+LHK SIMAH  +VLK 
Sbjct: 427  GNR--------IKAAQDLKN---GDIVERHLKDNDLVLFNRQPSLHKLSIMAHRTKVLK- 474

Query: 527  EKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLI 586
             +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++   +  V P NGD L +  
Sbjct: 475  HRTFRFNECCCAPYNADFDGDEMNLHLPQTEEAKAEALVLLANKSNLVTPRNGDLLIAAT 534

Query: 587  QDHIVSAALLTKKDTFLNRDEF-CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL 645
            QD I    LLT+KD F +R++    L + +G  +S   +                  LP+
Sbjct: 535  QDFITGGYLLTQKDVFFDREQVKLALCFLAGADASLTVT------------------LPI 576

Query: 646  LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKND 705
             PAI KP  LWTGKQ+ + ++    R  P   V+   K                      
Sbjct: 577  -PAILKPVKLWTGKQIFSLII----RPSPECPVKANLK---------------------T 610

Query: 706  KGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVID 765
            KGK   T                   GEE            +++  ++I  ++L+ G +D
Sbjct: 611  KGKTYTT-------------------GEEFC----------INDSYVIIRNSELLAGAMD 641

Query: 766  KAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL----ILK 818
             +     +   + + +   +G + A   +  L+RL   F    G + G+ DL+    +++
Sbjct: 642  VSTLGSGSKQNIFYILLRDWGEDYATASMWRLTRLTNHFNFDRGISIGLSDLIASQGLVQ 701

Query: 819  DKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMK 878
             +E     H     E  K +    L  + G  ++                       + K
Sbjct: 702  ARESILNTHYSKCHEYIKLMEQGQLASQPGCSVEET--------------------LETK 741

Query: 879  MTSQLNKHTSSSVINELLSEGLLKPTGKNWISL-MTTSGAKGSKVNFQQISSHLGQQELE 937
            + ++L      SVI + + +  LK   +    L M   G+KGS +N  Q+   +GQQ + 
Sbjct: 742  ILNEL------SVIRDNVGKACLKELHRTNTPLTMALCGSKGSYINVSQMIGCVGQQAIN 795

Query: 938  GKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKT 997
            G RVP     + LP        P   GF+ + F +GL  +E+YFH M GREGL DTAVKT
Sbjct: 796  GHRVPNGFENRALPHVLAQLRTPDVKGFVKNSFYSGLGSKEFYFHAMGGREGLTDTAVKT 855

Query: 998  SRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARE 1057
            + +GY+QR LIK+LE L + YD +VR++   I+Q CYG D +D    +++   D     +
Sbjct: 856  ADTGYMQRRLIKSLEDLCVHYDMTVRNSMRDIIQICYGGDKLD---PTYMEGKDCPVDYK 912

Query: 1058 RGRGRGRNKFCDKGSHTF----VMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKF 1113
            R     R K   K         VM   ++M+  +    L  S  +  EL + +K  A+K 
Sbjct: 913  RVYDHVRAKLPYKNEEPLDAVSVMSATEDMLSTEEYDCL--SEEFKKELVEFMKTVAQKI 970

Query: 1114 ADKFLSNEMAKQ---------------DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPS 1158
            A  +  N  +K                +F+   K K++ ++ +PG  VG LA+QS+GEP 
Sbjct: 971  A-HYRQNIKSKASVVLQLERLTVSQLVEFIHTCKEKYMRAVIEPGTAVGALAAQSIGEPG 1029

Query: 1159 TQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVG 1206
            T MTL TFH AG   MN+T G+PR++EI+  AS  I TP+IT  L+ G
Sbjct: 1030 TSMTLKTFHFAGVASMNITQGVPRIKEIIN-ASPKISTPIITATLVDG 1076


>gi|297527624|ref|YP_003669648.1| DNA-directed RNA polymerase subunit A' [Staphylothermus hellenicus
            DSM 12710]
 gi|297256540|gb|ADI32749.1| DNA-directed RNA polymerase subunit A' [Staphylothermus hellenicus
            DSM 12710]
          Length = 886

 Score =  367 bits (942), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 275/811 (33%), Positives = 396/811 (48%), Gaps = 140/811 (17%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            L P +V+  +EK+ + +  L          G    A      L V+ VPP   R PS   
Sbjct: 180  LNPIEVRARLEKILDEDVRLLG--------GDPVDARPEWMVLTVLPVPPRSVR-PSILL 230

Query: 302  DSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD----GK 355
            ++ +  E   T  L  +++ N  L     +   NA +I   W  LQ  V   FD    G 
Sbjct: 231  ETGIRSEDDLTHKLVDIIRINNRLREHIESGAPNA-IIEDEWELLQYHVTTYFDNEAPGI 289

Query: 356  NAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
              A  R   +  G+ Q L+ KEG FR  L GKRV+++ R+VISPDP L++NE+G+P   A
Sbjct: 290  PVARHRSGKVLKGLAQRLKGKEGRFRGNLRGKRVDFSARTVISPDPNLSINEVGVPEVVA 349

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTS 473
              LT PERVTPWN+ ++R  ++NG +  PGA + +         P+ + RIS+      +
Sbjct: 350  KILTVPERVTPWNIEEMRRLVLNGPDKWPGANYVIR--------PDGR-RISLKYVDRKA 400

Query: 474  RGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH 533
                + P         G +V RHL+DGD+VL NRQP+LH+ SIMAHVVRVL   KT R++
Sbjct: 401  MAETLAP---------GFIVERHLRDGDIVLFNRQPSLHRISIMAHVVRVLP-YKTFRLN 450

Query: 534  YANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSA 593
               C  YNADFDGDEMN+H PQ E +RAEA  ++      + P  G P+   +QD+I  A
Sbjct: 451  LLVCPPYNADFDGDEMNLHVPQSEEARAEARMLMLVEKHILTPRYGGPIIGGLQDYISGA 510

Query: 594  ALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPE 653
             LLT K T L R++  +LL        G+  + GK              LP  PAI KP+
Sbjct: 511  FLLTSKSTLLTREDVIELL--------GVAGYRGK--------------LP-EPAILKPK 547

Query: 654  PLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTN 713
              WTGKQ+I+                    LP DF   R                     
Sbjct: 548  QYWTGKQLISLF------------------LPDDFNYKR--------------------- 568

Query: 714  KMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND-LVRGVIDKAQFA-- 770
                             P +   A   +  +++   + L+I KN  L+ GV+DKA     
Sbjct: 569  -----------------PAKIAGATALRCIDEDCPHDSLVIVKNGVLLEGVLDKASIGRE 611

Query: 771  -DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLH 829
                L+H + + YG + A   +  + ++F  F + +GFT G   LL+  +    +K  L 
Sbjct: 612  EPESLIHWLVKEYGEDIARLFMDYVYKMFLRFAEKYGFTMGYSHLLLPPEA---KKRVLE 668

Query: 830  GSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSS 889
              EE  K V+ E +E     E++P +    IE+ +           + ++   L+K    
Sbjct: 669  VIEEKKKEVY-ELIEKYRRGELEP-RPGRTIEETL-----------EDEIIDLLSKKLLD 715

Query: 890  SVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKT 949
             V + ++    L     N + +M  +GA+G+ VN  Q+++ LGQQ + G+R+ R    +T
Sbjct: 716  DVADTIIPYFKL----SNPVIIMARTGARGNPVNLTQMAALLGQQTIRGRRITRGYMHRT 771

Query: 950  LPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK 1009
            LP F P D  P A GF+   F+ GL P E +FH  AGREGL DTAV+TS+SGY+QR LI 
Sbjct: 772  LPHFKPGDLGPEARGFVAHGFVDGLNPIEVFFHAAAGREGLTDTAVRTSQSGYMQRRLIN 831

Query: 1010 NLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             L+ L++ YD +VR   G I+QF YGEDGVD
Sbjct: 832  ALQDLRVEYDGTVRLPTGEIIQFAYGEDGVD 862



 Score = 48.1 bits (113), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 29/61 (47%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C  CG  +  CPGHFGHI+L  PV +      ++  LK  C  C   K    E +K +  
Sbjct: 61  CPVCGNTRESCPGHFGHIELARPVIHVSFVKHIHMYLKTTCRVCGRIKIKEEERKKYLEL 120

Query: 61  L 61
           L
Sbjct: 121 L 121


>gi|209875909|ref|XP_002139397.1| DNA-directed RNA polymerase I largest subunit [Cryptosporidium
           muris RN66]
 gi|209555003|gb|EEA05048.1| DNA-directed RNA polymerase I largest subunit, putative
           [Cryptosporidium muris RN66]
          Length = 1981

 Score =  367 bits (942), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 293/918 (31%), Positives = 418/918 (45%), Gaps = 183/918 (19%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG R   CPGH GHI+L +PVY+PL    L  LLK IC+ C   +  +   +  +++
Sbjct: 62  CTTCGGRS-ECPGHIGHIELELPVYHPLYIRQLVNLLKSICWHCCTLRICQDTCKDYIKR 120

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSC------------------SMVTP 102
           L L+ +      K   L     +++ E +D  +K  C                  + + P
Sbjct: 121 LFLLKESRYTDNKHF-LSDGRATTHTEYADNCSKLICDSNSQLNQPSNILSVDERANILP 179

Query: 103 RGNYDNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNC------KAKNPRIS-KPTF 155
             + D +R     +  +L+      +      I+   C NC        K  ++S   T 
Sbjct: 180 NDDID-IRTFISSDGYTLELWNNLRSEFFDKAIKQKACSNCGKSFRATVKESQLSIGITL 238

Query: 156 GWIHMNGMPHADIRANLIRGCNLGETFSGGE-EEKDLGASSDVDAPETHSFNGTFPGTQD 214
            W   +  P             LG T+     +E  +    D        F+   P   D
Sbjct: 239 SWPESSKSP-----------IGLGSTWGNYNLKEGQIKIEDD--------FSSEVP---D 276

Query: 215 TAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFG 274
            A    +KG   +   F+  +           V  I++KLWEN  ++  F+  M      
Sbjct: 277 QAKIHTKKGQSLISQHFQAFQ-----------VVPILKKLWENNEKILEFLFPM-----S 320

Query: 275 KKAGHSIFFLGVVLVPPIKFR-LPSKGGDSV-MEHPQTVLLSKVLQAN----IYLANAYV 328
           ++    +FF+ V+ VP  KFR L + GG ++ + HP+T  L  +L AN     Y+     
Sbjct: 321 REISWEMFFMFVIPVPANKFRPLGALGGRNIPLLHPRTSALLDILVANERLRFYIDLQRQ 380

Query: 329 NQPDNAKVIVARWM---------NLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFR 379
           N+  +   I              +LQ+ VN   D   +        GI Q LE+K G+ R
Sbjct: 381 NKDKSTDDIGGSSSQSGLLSYVSSLQERVNSYLDKNKSFKPASTPPGIRQWLERKTGVIR 440

Query: 380 QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
           QK+MGKRVNY+ R+VI PDPYL  NEIGIP  FA  LT PE V   NV+ +   + NG +
Sbjct: 441 QKMMGKRVNYSARTVIGPDPYLETNEIGIPLMFARNLTIPEYVGTHNVLIMCKLVENGTD 500

Query: 440 IHPGATHY-----LDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVY 494
            +PGAT       L  LS +    N   RIS  + L +S      P     N +   +V+
Sbjct: 501 HYPGATKLQLDGTLYDLSRL----NISQRISKSKLLLSS--VFTSPNPLIQNNY--PIVF 552

Query: 495 RHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFP 554
           R + DGDVVL+NRQPTLH+PSIMAH VR+L  +  +R++Y NC TYNADFDGDEMN+H P
Sbjct: 553 RQVIDGDVVLMNRQPTLHRPSIMAHFVRILPKDNIMRLNYVNCGTYNADFDGDEMNLHLP 612

Query: 555 QDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYS 614
           Q   SR+EA  I++A+ QY  P +G+PLR LIQD  +  A LT K TFLNR+E+  LLY+
Sbjct: 613 QSLSSRSEAKYIMDASQQYSVPKSGEPLRGLIQDSCIGGAFLTSKSTFLNREEYYHLLYT 672

Query: 615 S-----GVSSSGLGSF--------------------------------------TGKPGQ 631
           S      V SS L S                                       + K  +
Sbjct: 673 SLSFILDVKSSALSSLPIMYSANGHVIFGKNNTSSQLNTASGTVTIDETILRFQSHKNNR 732

Query: 632 RVLISRSEQE-VLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
           R   S +  + V+   PAI+KP PLWTGKQV+T++L                       K
Sbjct: 733 REFTSSTNLDGVILEPPAIFKPIPLWTGKQVVTSML-----------------------K 769

Query: 691 TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
           T  N    SDRK       +  N + K ++          PG+      +   E    E 
Sbjct: 770 TFINKTSSSDRK-----IYAGINLISKSRT----------PGDSWNGINDGDSE----ES 810

Query: 751 KLLIYKNDLVRGVIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFT 808
            ++I  ++L++GVIDK QF    Y LVH   +L+G    G LLS+   L   FLQ+ GFT
Sbjct: 811 TVIIRNSELLQGVIDKNQFGTNTYCLVHLCTDLFGPVIGGRLLSSFFYLSQAFLQIRGFT 870

Query: 809 CGVDDLLILKDKERERKN 826
           C + D+L+  + E+ RK+
Sbjct: 871 CSIGDMLLTLEAEKRRKD 888



 Score =  209 bits (531), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 97/167 (58%), Positives = 127/167 (76%), Gaps = 1/167 (0%)

Query: 889  SSVINELLS-EGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSG 947
            SS + E+++      P  KN  S M  +GAKGS+VN Q I + LGQQELEG+RVP M+S 
Sbjct: 1100 SSQVGEIVNGSSTFLPFPKNGFSSMVITGAKGSRVNHQMICAMLGQQELEGRRVPIMISM 1159

Query: 948  KTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL 1007
            K+LP+F P+D+  RAGGFI DR+L GL  QE++FHCM+GREGLVDTAVKT+RSGYLQRC+
Sbjct: 1160 KSLPAFAPYDFGSRAGGFITDRYLDGLHAQEFFFHCMSGREGLVDTAVKTARSGYLQRCI 1219

Query: 1008 IKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALA 1054
            +K LE + + YD +VR  DGS++QF YGEDG+DV + S+I++ D LA
Sbjct: 1220 LKGLESMIVQYDGTVRSDDGSMIQFIYGEDGIDVSKCSYIARVDDLA 1266



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/76 (57%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 1130 LVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTI 1189
            L++ K+  +   PGE VG LA+QS+GEP+TQMTLNTFHLAG G  NVTLGIPRL+E+L  
Sbjct: 1409 LLRLKYSQTQVAPGEAVGCLAAQSIGEPATQMTLNTFHLAGHGAANVTLGIPRLRELLQT 1468

Query: 1190 ASKDIKTPVITCPLLV 1205
              +  KTP    PL V
Sbjct: 1469 GGES-KTPYSFIPLNV 1483


>gi|323457244|gb|EGB13110.1| hypothetical protein AURANDRAFT_35850 [Aureococcus anophagefferens]
          Length = 1398

 Score =  367 bits (942), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 274/842 (32%), Positives = 411/842 (48%), Gaps = 142/842 (16%)

Query: 225  GAVPSGFKKQKDLFSGP--LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIF 282
            GAVP+     K   + P  L P DV+ I+EK+ +++   C  +    + G  +       
Sbjct: 180  GAVPTSATATK---APPTVLSPVDVRAILEKISDDD---CDLLWIDPRVGRPEN-----L 228

Query: 283  FLGVVLVPPIKFR----LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIV 338
             L  +LVPP   R    + S GG    E   T+ L +++  N  L  A + +  + K+IV
Sbjct: 229  VLKTLLVPPTPIRPSVAVDSPGGGGSNEDDLTIKLQEIIDVNSALRQA-IRKGGSMKMIV 287

Query: 339  ARWMNLQQSVNVLFDG-------KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYAC 391
              W  LQ  V +  +G       +NA   + +  G+CQ L+ K G FR  L GKRV+++ 
Sbjct: 288  EGWNFLQVQVALYLNGEVPGLQPRNAPAAKPI-RGLCQRLKGKSGRFRGNLSGKRVDFSA 346

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY---- 447
            R+VISPDP L V+++G+P   A  +TYPE+V   N+ KL+  ++ G +  PGA +     
Sbjct: 347  RTVISPDPNLRVDQVGVPQEVAKIMTYPEKVNALNLEKLQKLVVAGQKQWPGANYVEIAN 406

Query: 448  LDKLSTMRLPPNKKM-----RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDV 502
             D       PP KK      R  I ++L                   G +V RH+QDGDV
Sbjct: 407  HDDPGAGDRPPFKKSLLYGDRARIAKELRV-----------------GDVVERHMQDGDV 449

Query: 503  VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
            VL NRQP+LHK SIM+H V+V+   +T R +   C+ YNADFDGDEMN+H PQ E +RAE
Sbjct: 450  VLFNRQPSLHKLSIMSHEVKVMPW-RTFRFNECVCAPYNADFDGDEMNMHLPQTEEARAE 508

Query: 563  AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL 622
            A  ++N       P NG+PL +  QD + ++ L+T++D F +RD FC            L
Sbjct: 509  ASALMNVATNICTPRNGEPLVAATQDFVTASFLVTQRDVFFDRDAFC-----------AL 557

Query: 623  GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGG 682
             ++ G   +RV       +V P  PAI KP  LWTGKQ+ + ++      +P    E GG
Sbjct: 558  AAYVGDALERV-------DVPP--PAILKPVRLWTGKQLFSLIVRPTVAAKP----ENGG 604

Query: 683  KLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKS 742
              P   F+                          ++ +G   E +    G          
Sbjct: 605  AWPCVSFEC-----------------------AERNYTGSGIETMCPMDG---------- 631

Query: 743  KEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFT 799
                     +L  ++ L+ G I K    D    GLV+ +   +G   A T ++ L++L  
Sbjct: 632  --------YVLFRRSSLLCGNIAKKTVGDGSKKGLVYELYREHGPAAAATFMNRLAKLSA 683

Query: 800  VFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKS 858
             +L  H GF+ G+DD +   D     K  L        R  +EA E              
Sbjct: 684  RYLGYHKGFSIGIDD-VTPSDAVLALKAQLLEEGHAEARRKIEAYE-------------- 728

Query: 859  EIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAK 918
                A++ G D A+   + ++T  L K    +  N L++  L +    N   +M   G+K
Sbjct: 729  SGSLALQPGCD-ALQSLEAELTGLLGKVREQAGKN-LMTRDLPR---SNSPRIMAECGSK 783

Query: 919  GSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQE 978
            GS +N  Q+ + LGQQ ++GKR+      +TLP F   + +P A GF+ + F +GL   E
Sbjct: 784  GSAINVSQMIACLGQQAVDGKRIQNGFVQRTLPHFEVGELSPGARGFVANSFYSGLTATE 843

Query: 979  YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDG 1038
            ++FH M GREGLVDTAVKT+++GY+ R L+K LE L + YD +VR+++ +IVQF YG+DG
Sbjct: 844  FFFHTMGGREGLVDTAVKTAQTGYMARRLMKALEDLSVGYDGTVRNSEKNIVQFTYGDDG 903

Query: 1039 VD 1040
            +D
Sbjct: 904  LD 905



 Score = 83.2 bits (204), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 49/70 (70%), Gaps = 1/70 (1%)

Query: 1134 KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKD 1193
            K+   + +PGE VG + +Q + EP TQMTL TFH AG   MNVTLG+PRL EI+  ASK+
Sbjct: 1026 KYTRGVVEPGEAVGAIGAQCISEPGTQMTLKTFHFAGVASMNVTLGVPRLTEIIN-ASKN 1084

Query: 1194 IKTPVITCPL 1203
            I TP+IT  L
Sbjct: 1085 ISTPIITAHL 1094


>gi|348676845|gb|EGZ16662.1| hypothetical protein PHYSODRAFT_500633 [Phytophthora sojae]
          Length = 1532

 Score =  365 bits (938), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 251/784 (32%), Positives = 379/784 (48%), Gaps = 153/784 (19%)

Query: 282  FFLGVVLVPPIKFR--LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
              L  VLVPP+  R  +   GG    E   TV L +++Q N  L  A + +  + K+++ 
Sbjct: 260  LILNSVLVPPVCIRPSVAMDGGSGSNEDDITVKLQEIVQVNFAL-RAALQKGASLKMVME 318

Query: 340  RWMNLQQSVNVLFDGKNAA-----GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSV 394
             W  LQ  V  L +G         G +    G+CQ L+ K+G FR  L GKRV+++ R+V
Sbjct: 319  DWDFLQIQVAQLMNGDTPGLVKPPGAKSGIRGLCQRLKGKQGRFRGNLSGKRVDFSGRTV 378

Query: 395  ISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM 454
            ISPDP L ++++G+P + A  +TYPE+VT +N+ KLR  ++NG  +HPGA   + ++   
Sbjct: 379  ISPDPNLRIDQVGVPEHVAKTMTYPEKVTRYNIEKLRKCVVNGPNVHPGAN--IIRIEGQ 436

Query: 455  RLPPNKKM--RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLH 512
            +   N     R S+  +L                   G +V RH++DGD+VL NRQP+LH
Sbjct: 437  KFTKNLMYGDRASLADELKI-----------------GDIVERHMEDGDIVLFNRQPSLH 479

Query: 513  KPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQ 572
            K SIM+H V+V+   +T R +   CS YNADFDGDEMN+H PQ E +R EA  ++     
Sbjct: 480  KMSIMSHRVKVMPW-RTFRFNECVCSPYNADFDGDEMNMHLPQTEEARTEAITLMGVEQN 538

Query: 573  YVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQR 632
             + P NG+PL +  QD + ++ LLT+K+ F NR++FCQ++                    
Sbjct: 539  LITPRNGEPLVAATQDFLTASYLLTQKNIFFNREQFCQVI-------------------S 579

Query: 633  VLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 692
            ++   +E   LP LPAI  P  LWTGKQVI+ ++                  P    K  
Sbjct: 580  IMSDANEHIELP-LPAIVLPVRLWTGKQVISLLVK-----------------PNSQTKVM 621

Query: 693  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL 752
             N + +     N+K    K   +      +  E++ G  G++   + +K           
Sbjct: 622  ANLELKERNYTNNKYMCWKDGYV----CFRNSELICGNLGKKTLGDGSKQ---------- 667

Query: 753  LIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFL-QMHGFTCGV 811
                                GL + +   +GS+ A   ++ L++L   +L    GF+ G+
Sbjct: 668  --------------------GLFYVLIRDHGSHEAARCMNRLAKLCARWLGNFKGFSIGI 707

Query: 812  DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAA 871
            DD+                SEE+ K                      E EK ++ G DAA
Sbjct: 708  DDVT--------------PSEELAK----------------------EKEKLLQAGYDAA 731

Query: 872  VAYFDMKMTSQLNKHTSSSVINELLSE-----GLLKPTG----------KNWISLMTTSG 916
                +     +L+     + I  L SE     G L+ T            N   +M   G
Sbjct: 732  NNSIEEYRRGKLSLKPGCNAIQSLESELNGLLGKLRETAGAECMRTLPFHNNPRIMAECG 791

Query: 917  AKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRP 976
            +KGS +N  Q+ + +GQQ + GKRVP     +TLP F P      A GF+ + F +GL  
Sbjct: 792  SKGSALNISQMMACVGQQSVGGKRVPEGFVNRTLPHFLPHALHASAKGFVANSFYSGLTA 851

Query: 977  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE 1036
             E++FH M GREGLVDTAVKT+ +GY+ R L+K LE L   YD +VR+++GS+VQF +G+
Sbjct: 852  TEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSCQYDQTVRNSEGSVVQFTFGD 911

Query: 1037 DGVD 1040
            DG++
Sbjct: 912  DGLN 915



 Score = 84.0 bits (206), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 56/80 (70%), Gaps = 1/80 (1%)

Query: 1125 QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
            +  L++  +K+  +  +PGE VG + +QS+ EP TQMTL TFH AG   MNVTLG+PRL+
Sbjct: 1143 EKLLEVSLYKYNRAGMEPGEAVGAVGAQSISEPGTQMTLKTFHFAGVASMNVTLGVPRLK 1202

Query: 1185 EILTIASKDIKTPVITCPLL 1204
            EI+  ASK I TP+IT  L+
Sbjct: 1203 EIIN-ASKVISTPIITAALV 1221



 Score = 42.0 bits (97), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC  +   C GHFG+I L +PV++   F  +  +L+ IC  C        E E  +R+
Sbjct: 79  CDTCHLKLADCVGHFGYIKLELPVFHIGYFKAITEILQNICKSCSRVLLPPAERETFLRR 138

Query: 61  L 61
           +
Sbjct: 139 M 139


>gi|221043166|dbj|BAH13260.1| unnamed protein product [Homo sapiens]
          Length = 1369

 Score =  365 bits (938), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 295/965 (30%), Positives = 445/965 (46%), Gaps = 185/965 (19%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG E+HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            + M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  TQMKRFLKYGNREKMAQELKY-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQ+ + +L                  P D   
Sbjct: 571  -ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILR-----------------PSDDNP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK         GE+  A          ++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGK---------GEDLCA----------NDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E     ++EAL               ++++ 
Sbjct: 697  SIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQQ 739

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 740  PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 791

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A GF+ + F +GL P E++FH 
Sbjct: 792  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 851

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D   
Sbjct: 852  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD--P 909

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ-----EMIYKKCSGQLDASNAY 1098
             +   K + L   E  R     K          + +N+     E I KK S  L   +++
Sbjct: 910  AAMEGKDEPL---EFKRVLDNIKAVFPCPSEPALSKNELILTTESIMKK-SEFLCCQDSF 965

Query: 1099 IMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVLS 1138
            + E+   +K  +EK     DK+  N+    +                 FL+  + K++ +
Sbjct: 966  LQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQVEKFLETCRDKYMRA 1025

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG L +Q                     MN+TLG+PR++EI+  ASK I TP+
Sbjct: 1026 QMEPGSAVGALCTQ---------------------MNITLGVPRIKEIIN-ASKAISTPI 1063

Query: 1199 ITCPL 1203
            IT  L
Sbjct: 1064 ITAQL 1068



 Score = 47.4 bits (111), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121


>gi|126465703|ref|YP_001040812.1| DNA-directed RNA polymerase subunit A' [Staphylothermus marinus F1]
 gi|126014526|gb|ABN69904.1| DNA-directed RNA polymerase, subunit A' [Staphylothermus marinus F1]
          Length = 886

 Score =  365 bits (938), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 273/811 (33%), Positives = 396/811 (48%), Gaps = 140/811 (17%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            L P +V+  +EK+ + +  L          G    A      L V+ VPP   R PS   
Sbjct: 180  LNPIEVRARLEKILDEDVRLLG--------GDPIDARPEWMVLTVLPVPPRSVR-PSILL 230

Query: 302  DSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD----GK 355
            ++ +  E   T  L  +++ N  L     +   NA +I   W  LQ  V   FD    G 
Sbjct: 231  ETGIRSEDDLTHKLVDIIRINNRLREHIESGAPNA-IIEDEWELLQYHVTTYFDNEAPGI 289

Query: 356  NAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
              A  R   +  G+ Q L+ KEG FR  L GKRV+++ R+VISPDP +++NE+G+P   A
Sbjct: 290  PVARHRSGKVLKGLAQRLKGKEGRFRGNLRGKRVDFSARTVISPDPNISINEVGVPEVVA 349

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTS 473
              LT PERVTPWN+ ++R  ++NG +  PGA + +         P+ + RIS+      +
Sbjct: 350  KILTVPERVTPWNIEEMRRLVLNGPDKWPGANYVIR--------PDGR-RISLKYVDRKA 400

Query: 474  RGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH 533
                + P         G +V RHL+DGD+VL NRQP+LH+ SIMAHVVRVL   KT R++
Sbjct: 401  MAETLAP---------GFIVERHLRDGDIVLFNRQPSLHRISIMAHVVRVLP-YKTFRLN 450

Query: 534  YANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSA 593
               C  YNADFDGDEMN+H PQ E +RAEA  ++      + P  G P+   +QD+I  A
Sbjct: 451  LLVCPPYNADFDGDEMNLHVPQSEEARAEARMLMLVEKHILTPRYGGPIIGGLQDYISGA 510

Query: 594  ALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPE 653
             LLT K T L R++  +LL        G+  + GK              LP  PAI KP+
Sbjct: 511  FLLTSKSTLLTREDVIELL--------GVAGYRGK--------------LP-EPAILKPK 547

Query: 654  PLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTN 713
              WTGKQ+I+                    LP DF   R                     
Sbjct: 548  QYWTGKQLISLF------------------LPDDFNYKR--------------------- 568

Query: 714  KMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND-LVRGVIDKAQFA-- 770
                             P +   A   +  +++   + ++I KN  L+ GV+DKA     
Sbjct: 569  -----------------PAKMAGATALRCIDEDCPHDSIVIVKNGVLLEGVLDKASIGRE 611

Query: 771  -DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLH 829
                L+H + + YG + A   +  + ++F  F + +GFT G   LL+  +    +K  L 
Sbjct: 612  EPESLIHWLVKEYGEDIARLFMDYVYKMFLRFAEKYGFTMGYSHLLLPPEA---KKRVLE 668

Query: 830  GSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSS 889
              EE  K V+ E +E     E++P +    IE+ +           + ++   L+K    
Sbjct: 669  IIEEKKKEVY-ELIEKYHRGELEP-RPGRTIEETL-----------EDEIIDLLSKKLLD 715

Query: 890  SVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKT 949
             V + ++    L     N + +M  +GA+G+ +N  Q+++ LGQQ + G+R+ R    +T
Sbjct: 716  DVADTIIPYFKL----SNPVIIMARTGARGNPINLTQMAALLGQQTIRGRRITRGYMHRT 771

Query: 950  LPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK 1009
            LP F P D  P A GF+   F+ GL P E +FH  AGREGL DTAV+TS+SGY+QR LI 
Sbjct: 772  LPHFKPGDLGPEARGFVAHGFVDGLNPIEVFFHAAAGREGLTDTAVRTSQSGYMQRRLIN 831

Query: 1010 NLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             L+ L++ YD +VR   G IVQF YGEDGVD
Sbjct: 832  ALQDLRVEYDGTVRLPTGEIVQFAYGEDGVD 862



 Score = 47.0 bits (110), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C  CG  +  CPGHFGHI+L  PV +      ++  LK  C  C   K    E +   R 
Sbjct: 61  CPVCGNTRESCPGHFGHIELARPVIHVSFVKHIHMYLKTTCRVCGRIKIKEDERK---RY 117

Query: 61  LELI 64
           LEL+
Sbjct: 118 LELL 121


>gi|320101549|ref|YP_004177141.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus mucosus DSM
            2162]
 gi|319753901|gb|ADV65659.1| DNA-directed RNA polymerase, subunit A' [Desulfurococcus mucosus DSM
            2162]
          Length = 885

 Score =  365 bits (937), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 276/826 (33%), Positives = 401/826 (48%), Gaps = 142/826 (17%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P  F +Q +     L PS+V+  +EK+ +++ +L          G  + A      L V+
Sbjct: 165  PHTFYEQTEKGLVKLTPSEVRGRLEKIPDDDVKLLG--------GDPRDARPEWMVLTVL 216

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
             VPP   R PS   ++ +  E   T  L  +++ N  L   +V     + +I   W  LQ
Sbjct: 217  PVPPRSVR-PSVLLETGIRSEDDLTHKLVDIIRTNNRL-REHVEGGAPSAIIEDEWELLQ 274

Query: 346  QSVNVLFD----GKNAAGQRDMAS--GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDP 399
              V   FD    G   A  R   +  GI Q L+ KEG FR  L GKRV+++ R+V+SPDP
Sbjct: 275  YHVTTYFDNEAPGIPVAKHRSGKTLKGIAQRLKGKEGRFRNNLRGKRVDFSARTVVSPDP 334

Query: 400  YLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPN 459
             L++NE+G+P   A  LT PERVTPWN+ ++R  ++NG E  PGA + +        P  
Sbjct: 335  SLSINEVGVPEDVARILTVPERVTPWNIEEMRRLVLNGPEKWPGANYVVR-------PDG 387

Query: 460  KKMRIS-IGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
            +K+ +  + RK   +    ++P         G +V RHL DGDVVL NRQP+LH+ S+MA
Sbjct: 388  RKISLKFVDRK---AAAEALEP---------GFIVERHLMDGDVVLFNRQPSLHRISVMA 435

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H+VRVL   KT R++   C  YNADFDGDEMN+H PQ E +R EA  ++      + P  
Sbjct: 436  HIVRVLP-YKTFRLNLLVCPPYNADFDGDEMNLHVPQSEEARTEARLLMLVERHILTPRY 494

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            G P+   +QD+I  A +LT K T L++D+   LL           + TG  G+       
Sbjct: 495  GGPIIGGLQDYISGAYILTSKTTLLSKDDVVDLL-----------AVTGYKGE------- 536

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
                +P  PAI KP  LWTGKQ+++                    LP+DF          
Sbjct: 537  ----IP-EPAILKPRELWTGKQLVSLF------------------LPKDF---------- 563

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND 758
             + K+N K                              A   +  +++   + ++I KN 
Sbjct: 564  -NYKRNSK---------------------------IGSAAALRCIDEDCPHDSMVIVKNG 595

Query: 759  -LVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             L+ GV+DKA         LVH + + YG +     +  + ++F    + HGFT      
Sbjct: 596  VLLEGVLDKASIGREEPESLVHWLIKEYGEDYGRMFMDRVYKMFIRMSEKHGFTMSY--- 652

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
                       +HL   EE   R  L  + LE   E++ +  K    +     G      
Sbjct: 653  -----------SHLTLPEEARNR--LREIILEKKREVEELISKYRRGELQARPGKTPEET 699

Query: 875  FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
             + ++   L+K    SV  E+++      T  N + +M  +GA+G+ VN  Q+++ LGQQ
Sbjct: 700  LEDEIIDTLSKKLLDSV-AEVITPYF---TLVNPVVVMARTGARGNPVNLTQMAALLGQQ 755

Query: 935  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
             + GKR+ R   G+ LP F P D  P A GFI + F+ GL P E +FH  AGREGL+DTA
Sbjct: 756  TVRGKRLTRGYLGRALPHFKPEDLGPEARGFIANGFVNGLNPVEMFFHAAAGREGLIDTA 815

Query: 995  VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            V+TS+SGY+QR LI  L+ L++ YD SVR   G IVQ  YGEDGVD
Sbjct: 816  VRTSQSGYMQRRLINALQDLRVEYDGSVRLTTGEIVQLLYGEDGVD 861



 Score = 45.1 bits (105), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 28/61 (45%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C  CG  +  CPGHFGHI+L  PV +      +   L+  C  C   K    E  + +R 
Sbjct: 61  CPICGNTRDSCPGHFGHIELAKPVIHVGFVKHILMYLRATCRNCGRLKIPEEERNEYLRL 120

Query: 61  L 61
           L
Sbjct: 121 L 121


>gi|316997017|dbj|BAJ52636.1| RNA polymerase I largest subunit [Monosiga ovata]
          Length = 1041

 Score =  365 bits (937), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 223/500 (44%), Positives = 299/500 (59%), Gaps = 31/500 (6%)

Query: 735  KEAEKNKSKEKELSEEKLLIYK-NDLVRGVIDKAQ--FADYGLVHTVQELYGSNTAGTLL 791
            K   K  + + +L  E L+I++  +L+ GV+DK Q     YGL+H+  ELYG   A  +L
Sbjct: 116  KVVNKWSAGDMDLEGEDLVIFRAGELLNGVMDKNQCGATAYGLIHSCHELYGGRIAAEVL 175

Query: 792  SALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALEL--EDGA 849
            SA+ RLFT FL+    + GVDD+L+    +  R   +    +IG +   + L+L  ED  
Sbjct: 176  SAMGRLFTGFLKYRCISFGVDDILLQPGADAARVQVIERGLKIGPKAVRDFLQLPLEDDD 235

Query: 850  EIDPIK---LKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
               P     LK  IE  +R       A  D  M S ++    S  IN+ +  GL K    
Sbjct: 236  LHTPHGQHVLKRAIESTLRD--QTTAASLDSYMMS-VSGDLQSETINQTVPAGLTKQFPY 292

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
            N + L+  SGAKGS VN  QISS LG Q LEG+RVP M+SGKTLPSF  +D + RAGG I
Sbjct: 293  NSLQLIIQSGAKGSNVNATQISSLLGPQALEGRRVPVMISGKTLPSFPAFDPSLRAGGTI 352

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
             DRFLTGL+PQE+YFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE LKI+YD +VRDAD
Sbjct: 353  FDRFLTGLKPQEFYFHCMAGREGLVDTAVKTSRSGYLQRCLVKHLEDLKINYDLTVRDAD 412

Query: 1027 GSIVQFCYGEDGVDVHQT-----------SFISKFDALAARERGRGRGRNKFCDKGSHTF 1075
            GS+VQF YG+DG+DV +T           +F +  D L  R+  +     ++  KG    
Sbjct: 413  GSVVQFLYGDDGMDVTKTKQLQNFGFMGANFHAMLDVLNGRDLEQAFPGKEYAHKGWKYH 472

Query: 1076 VMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFA----DKFLS----NEMAKQDF 1127
                 +   Y     +    + Y   + ++L    +K+     D+ LS    +++     
Sbjct: 473  QKAMEKPAKYDPALSRY-RPDRYFGAVSESLTRELQKYMTADKDRLLSGKAGHKLTPDKL 531

Query: 1128 LKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 1187
             +LV  K + +LA PGE VG+LA+Q++GEPSTQMTLNTFH AGR +MNVTLGIPRL+EIL
Sbjct: 532  QQLVNLKSMRTLADPGENVGVLAAQALGEPSTQMTLNTFHFAGRSDMNVTLGIPRLREIL 591

Query: 1188 TIASKDIKTPVITCPLLVGK 1207
              A++ IKTP++  PLL G+
Sbjct: 592  MTATQKIKTPLMRVPLLPGE 611



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 72/123 (58%), Gaps = 18/123 (14%)

Query: 550 NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
           N+HFPQ+E++RAEA NI   +NQY    +G PLR LIQDHIV+   LT +DT L++  + 
Sbjct: 1   NMHFPQNELARAEAANIATTDNQYC-ALDGSPLRGLIQDHIVAGFQLTCRDTMLDQATYQ 59

Query: 610 QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
           QL+Y         G        R +I+        + P + KP+ LW+GKQVIT VL +I
Sbjct: 60  QLVY---------GCLRDHYDGRKIIT--------VPPCMIKPKMLWSGKQVITTVLKNI 102

Query: 670 TRG 672
           T G
Sbjct: 103 TAG 105


>gi|325185155|emb|CCA19646.1| DNAdirected RNA polymerase III largest subunit puta [Albugo laibachii
            Nc14]
 gi|325188545|emb|CCA23078.1| RNA polymerase III putative [Albugo laibachii Nc14]
          Length = 1543

 Score =  363 bits (932), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 271/904 (29%), Positives = 433/904 (47%), Gaps = 156/904 (17%)

Query: 232  KKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPP 291
            K Q+DL      P  V+++ E++ + + EL    S +   G  +K       L  +LVPP
Sbjct: 232  KAQQDLS-----PVIVQELFERIPDQDCELLWIDSSL---GRPEK-----LILNSLLVPP 278

Query: 292  IKFR--LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVN 349
            +  R  +    G    E   T+ L ++LQ N  L +A + Q     +++  W  LQ  V 
Sbjct: 279  VCIRPSVAMDAGAGSNEDDLTIKLQEILQVNFAL-HAALRQGATLTMVMEDWDFLQIQVA 337

Query: 350  VLFDGKNAAGQRDMAS-----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVN 404
             L  G      + M +     G CQ L+ K+G FR  L GKRV+++ R+VISPDP L ++
Sbjct: 338  QLMHGDTPGLVKPMNAPKSIRGYCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRID 397

Query: 405  EIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRI 464
            ++G+P + A  +TYPE+VT +N+ KLR  ++NG  +HPGA   + +L    L  N    +
Sbjct: 398  QVGVPQHVAKTMTYPEKVTRYNINKLRKCVVNGPNVHPGAN--IIQLQGQNLTKN----L 451

Query: 465  SIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVL 524
            S G + +            +D+   G  V RH++DGDVVL NRQP+LHK SIMAH  +V+
Sbjct: 452  SYGDRANM-----------ADDLKIGDTVERHMEDGDVVLFNRQPSLHKMSIMAHRAKVM 500

Query: 525  KGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRS 584
               +T R +   CS YNADFDGDEMN+H PQ E +R EA  ++   +  + P NG+PL +
Sbjct: 501  PW-RTFRFNECVCSPYNADFDGDEMNMHLPQTEEARTEALTLMGVEHNMITPRNGEPLVA 559

Query: 585  LIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLP 644
              QD + ++ LLT+K+ F NR++FCQ++                     ++S + + +  
Sbjct: 560  ATQDFLTASYLLTQKNIFFNREQFCQMI--------------------AIMSDAVEHIDI 599

Query: 645  LLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKN 704
              PAI  P  LWTGKQVI+ ++                  P DF K   N + +     N
Sbjct: 600  PEPAIIHPLRLWTGKQVISLLIK-----------------PNDFSKILVNLELKERNYTN 642

Query: 705  DKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGV 763
            +      T   +KD                                  + ++N +L+ G 
Sbjct: 643  N------TYMCYKD--------------------------------GYVCFRNSELMCGN 664

Query: 764  IDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFL-QMHGFTCGVDDLL---- 815
            + K    D    GL + +   +GS+ A   ++ L++L   +L    GF+ G+DD+     
Sbjct: 665  LCKKTLGDGSKQGLFYVLIRDHGSHEAARCMNRLAKLCARWLGGSKGFSIGIDDVTPSVH 724

Query: 816  ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYF 875
            ++  K    ++  +G+ E  ++  L  L L+ G                      A+   
Sbjct: 725  LMGKKNELLQSGYNGANEAIEQYRLGKLPLKPGCN--------------------AIQSL 764

Query: 876  DMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQE 935
            + ++   L K   ++      +E +      N   +M   G+KGS +N  Q+ + +GQQ 
Sbjct: 765  ESELNGLLGKLRETAG-----AECMRTLPFHNNPRIMAECGSKGSALNISQMVACVGQQS 819

Query: 936  LEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAV 995
            + GKRVP     +TLP F P      A GF+ + F +GL   E++FH M GREGLVDTAV
Sbjct: 820  VSGKRVPEGFVNRTLPHFLPHALHAAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAV 879

Query: 996  KTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAA 1055
            KT+ +GY+ R L+K LE L   YD +VR+++G++VQF YG+DG++    +F+   D    
Sbjct: 880  KTAETGYMARRLMKALEDLSCQYDRTVRNSEGAVVQFMYGDDGLN---PAFMEGDDRPVD 936

Query: 1056 RERGRGRGRNKFCDKGSHTFV-----MGRNQEMIYKKCSGQLDASNAYIMELPDALKDNA 1110
              R     R+   DK S + +     +   + M+ K+    L A   +++E+ +   + A
Sbjct: 937  FNRLYEHIRSTIPDKESRSLLPFEIRLLVKKAMLRKEFQSILPAGRKFLIEIEEFFSNLA 996

Query: 1111 EKFA 1114
             + A
Sbjct: 997  SRIA 1000



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 61/88 (69%), Gaps = 2/88 (2%)

Query: 1121 EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGI 1180
            ++  +  L++  +K+  +  +PGE VG + +QS+ EP TQMTL TFH AG   MNVTLG+
Sbjct: 1150 QLQIEKLLEVSLYKYHRACMEPGEAVGAIGAQSISEPGTQMTLKTFHFAGVASMNVTLGV 1209

Query: 1181 PRLQEILTIASKDIKTPVITCPLLVGKT 1208
            PRL+EI+  ASK+I TP+IT   LV KT
Sbjct: 1210 PRLKEIIN-ASKNISTPIITAA-LVNKT 1235



 Score = 42.4 bits (98), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC  R   C GHFG+I L +PV++   F  +  +L+ IC  C
Sbjct: 88  CDTCSLRLSDCVGHFGYIKLELPVFHIGFFKAILEILQMICKEC 131


>gi|299747435|ref|XP_002911169.1| RNA polymerase I largest subunit [Coprinopsis cinerea okayama7#130]
 gi|298407517|gb|EFI27675.1| RNA polymerase I largest subunit [Coprinopsis cinerea okayama7#130]
          Length = 1726

 Score =  363 bits (931), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 219/496 (44%), Positives = 299/496 (60%), Gaps = 45/496 (9%)

Query: 745  KELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFL 802
            K+  E++++    +L+ GV+DK+ F  +DYGLVH+V E+YG+  AG LL  LSRLFT FL
Sbjct: 799  KDSKEDQVIFLDGELLCGVLDKSAFGASDYGLVHSVYEVYGAEIAGKLLGILSRLFTKFL 858

Query: 803  QMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGA--EIDPIKLKSEI 860
            Q   FTC +DDL++    +++R + +   + +G    +E      G   E  P +L++ +
Sbjct: 859  QHRAFTCRMDDLILTPTGDKKRADLIERGKNLGTEGAIENFPSLSGVPKEEVPEQLRNLL 918

Query: 861  EKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGS 920
            E  +R   D  +A  D+ + ++L+K TSS + +  L   LL+    N +  MT SGAKGS
Sbjct: 919  ETVLRD--DNKMAGLDVTVKTKLSKLTSS-ISDACLPNELLRKFPYNHMQTMTLSGAKGS 975

Query: 921  KVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYY 980
             VN +QIS  LGQQELEG+RVP MVSGKTLPSF  ++    AGG++  RFLTG++PQE+Y
Sbjct: 976  AVNARQISCALGQQELEGRRVPVMVSGKTLPSFKAFETKAIAGGYVASRFLTGIKPQEFY 1035

Query: 981  FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE L++ YD +VR +D S+ QF YG DG+D
Sbjct: 1036 FHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLRVHYDNTVRGSDNSVYQFSYGGDGLD 1095

Query: 1041 V------HQTSFISKFDALAARERGRGRGRNKFCDKGSHTF---VMGRNQEM-------- 1083
            V      +Q +FI++     AR        N    K + ++   V+ ++ E         
Sbjct: 1096 VTKQKHLYQFAFIAQNSLSIARRLNPNAVANHMDLKTAPSYMKKVLRKSAERESPCGKAP 1155

Query: 1084 ---------IYK------KCSGQL-DASNAYIMELPDAL---KDNAEKFADKFLSNEMAK 1124
                     +Y         S Q   A   YI   PD L   K    +F  ++    M  
Sbjct: 1156 RDEYDPVLSVYNPNKYLGSTSEQFATAVRQYIKANPDGLLIEKSEKPRFPTRY--PPMLS 1213

Query: 1125 QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
            ++F  L+  K++ SL +PGE VGLLASQ VGEPSTQMTLNTFH AG G  NVTLGIPRL+
Sbjct: 1214 KNFQLLMNVKYMRSLVEPGEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLR 1273

Query: 1185 EILTIASKDIKTPVIT 1200
            EI+  AS+  KTP +T
Sbjct: 1274 EIVMTASQKPKTPSMT 1289



 Score =  329 bits (844), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 196/472 (41%), Positives = 270/472 (57%), Gaps = 79/472 (16%)

Query: 242 LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHS-------------IFFLGVVL 288
           + P + +  + +L++NE  +CS I       FG+   H+             +FFL V+ 
Sbjct: 342 IAPEECRAHLRRLFKNETIMCSLI-------FGRHGPHAPVNKDQLAIASADMFFLEVLP 394

Query: 289 VPPIKFRLPSKGGDSVMEHPQTVLLSKVLQA-------NIYLANAYVNQPDNAKV----- 336
           V P +FR P+K G+++ EHPQ  LL++VL         N+ L  A     +  +V     
Sbjct: 395 VSPTRFRPPAKMGETLFEHPQNELLARVLNTSYKLRDINLDLRTASQKGDEFDEVARRTL 454

Query: 337 ---IVARWMNLQQSVNVLFDG-KNAAGQRD---MASGICQLLEKKEGLFRQKLMGKRVNY 389
              ++ R + LQ  VN   D  KN    R      +G+ Q LEKKEGLFR+ +MGKRVNY
Sbjct: 455 MSQLLDRLIQLQIDVNSFMDSSKNPQVVRQGKLPPAGVKQGLEKKEGLFRKHMMGKRVNY 514

Query: 390 ACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGAT---- 445
           A RSVISPD  +  +EIGIPP FA +LT+PE VT  N  ++R  +ING   +PGA+    
Sbjct: 515 AARSVISPDVNIEPSEIGIPPVFARKLTFPEPVTADNFHEMRQRVINGPNNYPGASMVEY 574

Query: 446 -----HYLDKLSTMRLPPNKKMRISIGRKLDT--SRGAIVQPGKDSDNEFEGKMVYRHLQ 498
                  LDKL+        + R +I  +L T  S  A  + G  +      K VYRHLQ
Sbjct: 575 EDGRQQSLDKLTV-------EQRTAIANQLLTPQSDHATSRKGLFTRTAGVNKKVYRHLQ 627

Query: 499 DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
           DGD++++NRQPTLHKPS+M H  +VL GEKT+RMHYANC++YNADFDGDE       + V
Sbjct: 628 DGDILILNRQPTLHKPSMMCHRAKVLHGEKTIRMHYANCNSYNADFDGDE-------NHV 680

Query: 559 SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
           +RAEA  I N +NQY+ P++G+PLR LIQDH+V+   +T ++ F  R+E+ QLLY +   
Sbjct: 681 ARAEATFIANTDNQYLVPTSGNPLRGLIQDHVVAGVWMTSQNAFFTREEYFQLLYGA--- 737

Query: 619 SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
                        R   S S   ++ L PAIWKP+PLWTGKQ+I+ VL +IT
Sbjct: 738 ------------LRPEDSESNSRLVTLSPAIWKPQPLWTGKQIISTVLKNIT 777



 Score = 86.3 bits (212), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 48/76 (63%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    F CPGHFGHI+L  PV++PL    LY LL+ +C FCH FK SR ++ K + K
Sbjct: 63  CATCHLTYFTCPGHFGHIELPAPVFHPLFMGNLYNLLRGMCMFCHRFKMSRTQLSKYMAK 122

Query: 61  LELIIKGDIIAAKSLD 76
           L L+  G + AA  +D
Sbjct: 123 LRLLEHGLVEAAMGVD 138


>gi|390939171|ref|YP_006402909.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus fermentans
            DSM 16532]
 gi|390192278|gb|AFL67334.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus fermentans
            DSM 16532]
          Length = 886

 Score =  362 bits (930), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 282/836 (33%), Positives = 401/836 (47%), Gaps = 162/836 (19%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P  F +Q +     L PS+V+  +EK+  ++ +L          G    A      L V+
Sbjct: 166  PHTFYEQTERGLLKLTPSEVRGRLEKISNDDVKLLG--------GDPSDARPEWMVLTVL 217

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
             VPP   R PS   ++ +  E   T  L  +++ N  L   +V     + +I   W  LQ
Sbjct: 218  PVPPRSVR-PSVLLETGIRSEDDLTHKLVDIIRTNNRL-REHVEGGAPSAIIEDEWELLQ 275

Query: 346  QSVNVLFD----GKNAAGQRDMAS--GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDP 399
              +   FD    G   A  R   +  GI Q L+ KEG FR  L GKRV+++ R+VISPDP
Sbjct: 276  YHITTYFDNEVPGVPVAKHRSGKTLKGIAQRLKGKEGRFRNNLRGKRVDFSARTVISPDP 335

Query: 400  YLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPN 459
             L++NE+G+P   A  LT PERVTPWN+ ++R  ++NG E  PGA + +        P  
Sbjct: 336  SLSINEVGVPEDVAKILTIPERVTPWNIEEMRKLVLNGPEKWPGANYIVR-------PDG 388

Query: 460  KKMRIS-IGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
            +K+ +  + RK   +    ++P         G +V RHL DGD+VL NRQP+LH+ S+MA
Sbjct: 389  RKISLKFVDRK---AAAESLEP---------GFIVERHLMDGDIVLFNRQPSLHRISVMA 436

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            HVVRVL   KT R++   C  YNADFDGDEMN+H PQ E +RAEA  ++      + P  
Sbjct: 437  HVVRVLP-YKTFRLNLLVCPPYNADFDGDEMNLHVPQSEEARAEARLLMLVERHILTPRY 495

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            G P+   +QD+I  A +LT K T L++D+   LL S+G        + G+          
Sbjct: 496  GGPIIGGLQDYISGAYILTSKTTLLDKDDVVDLLSSTG--------YKGE---------- 537

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
                LP  PAI KP  LWTGKQ+++                    LP+DF          
Sbjct: 538  ----LP-EPAILKPRALWTGKQLVSLF------------------LPKDF---------- 564

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND 758
             + K+N K                              A   +  +++   + L+I KN 
Sbjct: 565  -NYKRNSK---------------------------IGSAAALRCIDEDCPHDSLVIIKNG 596

Query: 759  -LVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             L+ GV+DKA         LVH + + YG +     +  + ++F    + +G T     L
Sbjct: 597  VLLEGVLDKASIGREEPESLVHWLIKEYGEDYGRMFMDRVYKMFIRMSEKYGLTMSYTHL 656

Query: 815  LILKDKERERKNHLHGSEEI-GKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVA 873
             +      E +N L  SE I GK+  +E L                I K  RG       
Sbjct: 657  TL----PEEARNRL--SEIIAGKKKEVEEL----------------ISKYRRGE------ 688

Query: 874  YFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK---------NWISLMTTSGAKGSKVNF 924
               +    +  K T    I ++LS+ LL    +         N + +M  +GA+G+ VN 
Sbjct: 689  --LLARPGKTVKETLEDEIIDILSKKLLDSVAEVITPYFTLVNPVVIMARTGARGNPVNL 746

Query: 925  QQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCM 984
             Q+++ LGQQ + GKR+ R   G+ LP F P D  P A GFI   F+ GL P E +FH  
Sbjct: 747  TQMAALLGQQTVRGKRLTRGYLGRALPHFKPEDLGPEARGFIASGFVHGLNPVEMFFHAA 806

Query: 985  AGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            AGREGL+DTAV+TS+SGY+QR LI  L+ L++ YD SVR   G IVQ  YGEDGVD
Sbjct: 807  AGREGLIDTAVRTSQSGYMQRRLINALQDLRVEYDGSVRLTTGEIVQLLYGEDGVD 862



 Score = 45.1 bits (105), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 28/61 (45%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C  CG  +  CPGHFGHI+L  PV +      +   LK  C  C   K    E  + +R 
Sbjct: 62  CPICGNTRDSCPGHFGHIELAKPVIHVGFAKQILIYLKATCRNCGRLKIPEEEKGEYLRL 121

Query: 61  L 61
           L
Sbjct: 122 L 122


>gi|68070079|ref|XP_676951.1| DNA-directed RNA polymerase 3 largest subunit [Plasmodium berghei
            strain ANKA]
 gi|56496875|emb|CAI00330.1| DNA-directed RNA polymerase 3 largest subunit, putative [Plasmodium
            berghei]
          Length = 1490

 Score =  362 bits (929), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 259/827 (31%), Positives = 397/827 (48%), Gaps = 162/827 (19%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDS--VMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
              +  ++VPP   R PS   D     E   T +LS++ Q N  + N   N     + +  
Sbjct: 246  LIITTLIVPPNTIR-PSVIIDEHGTAEDDLTCILSEIAQLNNTINNQSYNGYQTNQFLNI 304

Query: 340  RWMNLQQSVNVLFDGKNAAGQRDMAS--------GICQLLEKKEGLFRQKLMGKRVNYAC 391
             ++ LQ  V    +  + A  + +A+        GICQ L+ KEG FR  L GKRV+++ 
Sbjct: 305  EFLQLQ--VTRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSS 362

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP ++++E+ IP   A+RLTYPE V  +N+ KL+  I NG+ + PGA + + K 
Sbjct: 363  RTVISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIEKLKMLIRNGSNVWPGANYIIKKN 422

Query: 452  STMRLPPNKKMRISI-------------------------GRKLDTSRGAIVQPGKDS-- 484
             +M    N K+  SI                            L  +R ++    K    
Sbjct: 423  VSMNCDENGKVGNSIIDIVKRYVNKSTELNINHEQNQNSSNNNLGANRISLKYANKKYVI 482

Query: 485  DNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADF 544
            DN   G +V RH+ DGD+VL NRQP+LH+ SIM H  RV+   KT R +   CS YNADF
Sbjct: 483  DNLKIGDIVERHICDGDIVLFNRQPSLHRMSIMCHKARVM-DYKTFRFNECVCSPYNADF 541

Query: 545  DGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLN 604
            DGDEMN+H PQ E SRAEA  ++N  +  + P NG+ + +L QD + ++ ++T KDTFL+
Sbjct: 542  DGDEMNLHVPQTEESRAEALYLMNVKHNLITPKNGEVIIALTQDFLSASYVITNKDTFLD 601

Query: 605  RDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITA 664
            RD FC L                        S ++ ++   +PAI KP+ LWTGKQ+I+ 
Sbjct: 602  RDLFCLLC--------------------SYFSDAKIDIELPVPAILKPKELWTGKQLISV 641

Query: 665  VLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKK 724
            ++                                                    K  K +
Sbjct: 642  LI----------------------------------------------------KPNKSE 649

Query: 725  EVVEGKPGEEKEAEKNKSKEKELSEEK--LLIYKNDLVRGVIDKAQF--ADYGLVHTVQE 780
              +     +E+E        K LS +   +  YK++L+ G + K     + YGL + +  
Sbjct: 650  NTIINFEMKEREYSTKNGDLKYLSRDDSYVCFYKSELICGSLGKKVLGASKYGLFYYLIH 709

Query: 781  LYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL---ILKDKERERKNHLHGSEEIGKR 837
               +  A  +++  S+L + +    G T G+DD+    +L DK+R+    L+G E++ K 
Sbjct: 710  NNSTQIALQIMNRFSKLSSRYFSNKGMTIGIDDVTPSRVLTDKKRDL--LLNGYEKVNKE 767

Query: 838  VHL---EALELEDGAEID---PIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSV 891
            + L   + ++++ G  ++    IK+KS ++      G     Y                 
Sbjct: 768  IILYNEKKMQIQPGCTLEETLEIKVKSILDDLRNDAGKTCNQYLPY-------------- 813

Query: 892  INELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLP 951
                    L KP       +M  SGAKG+ +N  Q+ + +GQQ + G+R+      +TLP
Sbjct: 814  --------LNKPL------IMFNSGAKGALINIAQMIACVGQQNVSGQRIQNGFINRTLP 859

Query: 952  SFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 1011
             F+       + GF+ + F TGL P E++FH M+GREGLVDTAVKT+ +GY+QR L+K L
Sbjct: 860  HFNFHCKGSESRGFVQNSFYTGLNPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKAL 919

Query: 1012 ECLKISYDYSVRDADGSIVQFCYGEDG-----VDVHQTSFISKFDAL 1053
            E L I YDYSVR  D  I+QF YG+D      +D + T ++ +FD +
Sbjct: 920  EDLSIHYDYSVRSCDKQIIQFIYGDDALNPSYIDSNHT-YMDQFDKI 965



 Score = 47.0 bits (110), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHL 1168
            F+     K+   ++ PG+ VG +++QS+GEP TQMTL TFH 
Sbjct: 1449 FIYFNISKYFKYISSPGDAVGSISAQSIGEPGTQMTLKTFHF 1490



 Score = 43.1 bits (100), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVE 55
           C+TC ++   C GHFG+I+L  PV++   +  +  +L  IC  C H      ++E
Sbjct: 87  CETCKKKLINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKTCSHLLLPLEKIE 141


>gi|375083052|ref|ZP_09730090.1| DNA-directed RNA polymerase subunit A' [Thermococcus litoralis DSM
            5473]
 gi|374742288|gb|EHR78688.1| DNA-directed RNA polymerase subunit A' [Thermococcus litoralis DSM
            5473]
          Length = 905

 Score =  362 bits (928), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 271/823 (32%), Positives = 399/823 (48%), Gaps = 149/823 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            ++PS+++D +EK+ + +  L     +        K+      L V+ VPP+  R PS   
Sbjct: 181  MMPSEIRDRLEKIPDKDLPLLGLDPE--------KSRPEWMVLTVLPVPPVTVR-PSITL 231

Query: 302  DSVM--EHPQTVLLSKVLQANIYL-ANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAA 358
            +S +  E   T  L  +++ N  L  N     P    +I   W  LQ  V   FD + + 
Sbjct: 232  ESGIRAEDDLTHKLVDIIRINARLKQNIEAGAPQ--LIIEDLWDLLQYHVTTYFDNETSG 289

Query: 359  -------GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
                     R + + + Q L+ KEG FR+ L GKRVN++ R+VISPDP +++NE+G+P  
Sbjct: 290  IPPAKHKSGRPLKT-LAQRLKGKEGRFRKNLSGKRVNFSARTVISPDPMISINEVGVPLV 348

Query: 412  FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLD 471
             A+ LT PE+VT +N+ KLR  I+NG E +PGA + +D       P  +++R+     ++
Sbjct: 349  VAMELTVPEKVTEFNIEKLRKMILNGPEKYPGANYVID-------PQGRRIRL-----ME 396

Query: 472  TSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTL 530
            ++RG I        N  + G  V RHL DGD+VL NRQP+LH+ SIMAH VRV+   KT 
Sbjct: 397  SNRGTIA-------NMLDIGWTVERHLLDGDIVLFNRQPSLHRMSIMAHRVRVMP-YKTF 448

Query: 531  RMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHI 590
            R++ A C  YNADFDGDEMN+H PQ E ++AEA  ++   N  + P  G P+   IQDHI
Sbjct: 449  RLNLAVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHILSPRYGGPIIGGIQDHI 508

Query: 591  VSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIW 650
                LLT++  +  + E  Q+L  +GV    L     KP       + E  V        
Sbjct: 509  SGGYLLTREGAYFTKYEVEQMLMFAGVDVKEL----PKP------DKVENGV-------- 550

Query: 651  KPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLS 710
                 W+GK + + +                  LP D                     + 
Sbjct: 551  ---EYWSGKTIFSLL------------------LPDDL-------------------TIW 570

Query: 711  KTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEK----LLIYKNDLVRGVIDK 766
              NK+  D S       + +P E+   EK    E+E+ E      + I    L+ G IDK
Sbjct: 571  YRNKLCDDPS-------QCEPIEKLIEEKLVPSEEEIREVATDGFVYIRNGKLLSGAIDK 623

Query: 767  AQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL-LILKDKERE 823
              +   D  ++  +   YG   A   L  +++L    +   GFT G+DD  L  + K R 
Sbjct: 624  KAYGREDGKILDIIVREYGVERARQFLDQVTKLAIWVITHKGFTTGIDDEDLPDEAKARI 683

Query: 824  RKNHLHGSEEIGKRV------HLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDM 877
            R+  +   +++ + +       LE L  +   E    K+ + + +A    G  A  Y  M
Sbjct: 684  REIIMEAEDKVQRLIEAYKNGELEPLPGKTLEETLESKIMAVLSEARDNAGKVAEKYLGM 743

Query: 878  KMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELE 937
                  N HT                       +M  +GA+G  +N  Q+++ LGQQ + 
Sbjct: 744  ------NNHT----------------------VIMAKTGARGKILNITQMAAMLGQQSIR 775

Query: 938  GKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKT 997
            GKR+ R    + L  F P D   RA GFI++ + +GL PQEY+FH M GREGLVDTAV+T
Sbjct: 776  GKRLYRGYRNRVLSHFKPGDLGARAKGFIVNSYKSGLTPQEYFFHAMGGREGLVDTAVRT 835

Query: 998  SRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            ++SGY+QR LI  L+ LK+ YD +VRD  G IVQF YGEDGVD
Sbjct: 836  AQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQFRYGEDGVD 878



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG     CPGHFGHI+L  PV +      +Y +L+  C  C   + +  E+E+ + K
Sbjct: 60  CETCGANYKECPGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIRLTDEEIEEYMTK 119

Query: 61  LEL 63
             +
Sbjct: 120 FSV 122


>gi|82794246|ref|XP_728359.1| RNA polymerase A/beta'/A'' subunit [Plasmodium yoelii yoelii 17XNL]
 gi|23484677|gb|EAA19924.1| RNA polymerase A/beta'/A'' subunit, putative [Plasmodium yoelii
            yoelii]
          Length = 2020

 Score =  360 bits (925), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 265/835 (31%), Positives = 405/835 (48%), Gaps = 171/835 (20%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDS--VMEHPQTVLLSKVLQ---------ANIYLANAYVNQ 330
              +  ++VPP   R PS   D     E   T +LS++ Q         +N Y  N ++  
Sbjct: 246  LIITTLIVPPNTIR-PSVIIDEHGTAEDDLTCILSEIAQLNNTINSQSSNGYQTNQFLGN 304

Query: 331  PDNAKVIVARWMNLQQ-SVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNY 389
             +  ++ V R++N    +V+ L   +N +       GICQ L+ KEG FR  L GKRV++
Sbjct: 305  IEFLQLQVTRFINSDSPAVSQLLATQNISKP---GRGICQRLKGKEGRFRCNLSGKRVDF 361

Query: 390  ACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLD 449
            + R+VISPDP ++++E+ IP   A+RLTYPE V  +N+ KL+  I NG+ + PGA + + 
Sbjct: 362  SSRTVISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIEKLKMLIRNGSNVWPGANYVIK 421

Query: 450  KLSTMRLPPNKKMRISI----------GRKLDTS-----------------RGAIVQPGK 482
            K   M    N K+  SI           R+L+TS                  GA     K
Sbjct: 422  KNVNMNYDENGKIGNSIIDIVKRYVNKSRELNTSFSKNINNEQNQNSSNNNLGANRISLK 481

Query: 483  DSDNEFE------GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYAN 536
             ++ ++       G +V RH+ DGD+VL NRQP+LH+ SIM H  RV+   KT R +   
Sbjct: 482  YANKKYVIDQLKIGDIVERHICDGDIVLFNRQPSLHRMSIMCHKARVM-DYKTFRFNECV 540

Query: 537  CSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALL 596
            CS YNADFDGDEMN+H PQ E SRAEA  ++N  +  + P NG+ + +L QD + ++ ++
Sbjct: 541  CSPYNADFDGDEMNLHVPQTEESRAEALYLMNVKHNLITPKNGEVIIALTQDFLSASYVI 600

Query: 597  TKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLW 656
            T KDTFL+RD FC  L  S  S + +                    LP +PAI KP+ LW
Sbjct: 601  TNKDTFLDRDLFC--LXCSYFSDAKIDI-----------------ELP-VPAILKPKELW 640

Query: 657  TGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMH 716
            TGKQ+I+ ++                                                  
Sbjct: 641  TGKQLISVLI-------------------------------------------------- 650

Query: 717  KDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEK--LLIYKNDLVRGVIDKAQF--ADY 772
              K  K +  +     +E+E        K LS +   +  YK++L+ G + K     + Y
Sbjct: 651  --KPNKNENTIINFEMKEREYSTKNGDLKYLSRDDSYVCFYKSELICGSLGKKVLGASKY 708

Query: 773  GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL---ILKDKERERKNHLH 829
            GL + +     +  A  +++  S+L + +    G T G+DD+    +L DK+R+    L+
Sbjct: 709  GLFYYLIHNNSTQIALQIMNRFSKLSSRYFSNKGMTIGIDDVTPSRVLTDKKRDLL--LN 766

Query: 830  GSEEIGKRVHL---EALELEDGAEID---PIKLKSEIEKAMRGGGDAAVAYFDMKMTSQL 883
            G E++ K + L   + ++++ G  ++    IK+KS ++      G     Y         
Sbjct: 767  GYEKVNKEIILYNEKKMQIQPGCTLEETLEIKVKSILDDLRNDAGKTCNQYLPY------ 820

Query: 884  NKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPR 943
                            L KP       +M  SGAKG+ +N  Q+ + +GQQ + G+R+  
Sbjct: 821  ----------------LNKPL------IMFNSGAKGALINIAQMIACVGQQNVSGQRIQN 858

Query: 944  MVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYL 1003
                +TLP F+       + GF+ + F TGL P E++FH M+GREGLVDTAVKT+ +GY+
Sbjct: 859  GFINRTLPHFNFHCKGSESRGFVQNSFYTGLNPTEFFFHTMSGREGLVDTAVKTAETGYM 918

Query: 1004 QRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDG-----VDVHQTSFISKFDAL 1053
            QR L+K LE L I YDYSVR  D  I+QF YG+D      +D + T ++ +FD +
Sbjct: 919  QRRLMKALEDLSIHYDYSVRSCDKQIIQFIYGDDALNPSYIDSNHT-YMDQFDKI 972



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 55/79 (69%), Gaps = 1/79 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            F+     K+   ++ PG+ VG +++QS+GEP TQMTL TFH AG   MNVTLG+PR++EI
Sbjct: 1460 FIYFNISKYFKYISSPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI 1519

Query: 1187 LTIASKDIKTPVITCPLLV 1205
            +  AS  I+TP++  PL +
Sbjct: 1520 IN-ASSIIQTPILNIPLRI 1537



 Score = 43.1 bits (100), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVE 55
           C+TC ++   C GHFG+I+L  PV++   +  +  +L  IC  C H      ++E
Sbjct: 87  CETCKKKLINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKTCSHILLPLEKIE 141


>gi|226289059|gb|EEH44571.1| DNA-directed RNA polymerase I subunit RPA1 [Paracoccidioides
            brasiliensis Pb18]
          Length = 1691

 Score =  360 bits (925), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 218/487 (44%), Positives = 295/487 (60%), Gaps = 42/487 (8%)

Query: 748  SEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
            SEE  +I+++ +L+ G++DKAQ   +  GL+H+V ELYG   AG L+  + RL T FL M
Sbjct: 776  SEEGQVIFQDGELLCGILDKAQLGPSPSGLIHSVHELYGHVVAGKLIGIIGRLLTKFLHM 835

Query: 805  HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI-----KLKSE 859
              FTCG+DDL + K  + +RK  L  +E +G+++ L+ + L+    I+P+     +LK  
Sbjct: 836  RAFTCGMDDLRLTKKGDEDRKMILQEAESLGRQIALKYVTLD----INPVDDEEAELKRR 891

Query: 860  IEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKG 919
            +E A+R   D   A  D   +SQ     SS +    L  GL KP   N +  MTTSGAKG
Sbjct: 892  LEDALRD--DEKQAGLDAVYSSQAAT-VSSEISAACLPLGLEKPFPWNQMQAMTTSGAKG 948

Query: 920  SKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEY 979
            + VN   IS +LGQQ LEG+RVP M+SGKTLPSF P++ +  AGG+I  RFLTG++PQEY
Sbjct: 949  TVVNANLISCNLGQQILEGRRVPVMISGKTLPSFKPFETSLMAGGYISGRFLTGIKPQEY 1008

Query: 980  YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD-ADGSIVQFCYGEDG 1038
            YFH MAGREGL+DTAVKTSRSGYLQRCLIK +E LK  YD SVR+  DGS++QF YGEDG
Sbjct: 1009 YFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDNSVRETTDGSVIQFLYGEDG 1068

Query: 1039 VDVHQTSFISKFDALAARERG---RGRGRNKFCDKGSHTFV-MGRNQEMIYKK------- 1087
            +++ +   +  F  LA           G ++F   GS       RN    ++K       
Sbjct: 1069 LEITKQKHLQDFSFLAQNYWTVLEELNGSDEFTRIGSDAAAEWNRNAVKKFRKTRKLDCV 1128

Query: 1088 -----------CSGQLDASNAYIMELPDALKDNAEK-FADKF-LSNEMAKQDFLKLVKHK 1134
                       C G    S  + M L    K+N +K   +K  + + ++K  F K++  K
Sbjct: 1129 DPALSLFAPGSCYGS--TSETFAMALRKYQKENPDKQLREKGKVEDGISKGSFAKVMNMK 1186

Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
            ++ S+ +PGE VG++A QS+GEPSTQMTLNTFHLAG    NVTLGIPRL+EI+  AS  I
Sbjct: 1187 YMRSVVEPGESVGIVAGQSIGEPSTQMTLNTFHLAGHSTKNVTLGIPRLREIVMTASSQI 1246

Query: 1195 KTPVITC 1201
             TP +T 
Sbjct: 1247 LTPTMTA 1253



 Score =  358 bits (919), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 245/718 (34%), Positives = 365/718 (50%), Gaps = 76/718 (10%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    + C GH GHI+L V VYN   F+ L+ LL+  C +CH F+ SR +V+    K
Sbjct: 63  CTTCRLNSWSCNGHSGHIELPVHVYNVTFFDQLFRLLRAQCVYCHRFRMSRVDVKSYACK 122

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCS--MVTPRGNY-----DNVRNLK 113
           + L+  G I  A ++D        NP      ++       +  R  Y      NV+ ++
Sbjct: 123 MRLLQYGLIEEAAAIDGMGSRGKGNPGSGSEDSEDEDEEDFIRRRDAYVKRCVYNVK-MR 181

Query: 114 PQEWTSLQFAEAKLALLQ-------FLKIETT--KCGNCKAKNPRISKPTFGWIHMNGMP 164
            ++   L   +  +A+ +       FLK  T   KC +C   +P   +  +  I    +P
Sbjct: 182 NKDQNFLYGVKNPVAMERRRDIVRAFLKDITAVKKCASCSGISPPFRRDKYSKIFKMPLP 241

Query: 165 HADIRANLIRGCNLGETFSGGEEEKDL----------GASSDVDAP---ETHSFNGTFPG 211
                A    G ++       +E  DL          G   D +A    ++H        
Sbjct: 242 QKAKIAMTEAGFHIPNPLLLMKEANDLSKKHGNSYMNGFPDDDNASISTDSHGAEQQITM 301

Query: 212 TQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPS-DVKDIIEKLWENEFELCSFISDMQQ 270
                A+  ++GS   PS    Q+       +PS +V   +  L+E E E+ + + D + 
Sbjct: 302 GNAVLAQVEERGSRNKPSDQGAQQ------FMPSPEVYASLRLLFEREQEVLNLVYDSRP 355

Query: 271 QGFGKK-AGHSIFFLGVVLVPPIKFR-LPSKGGDSVMEHPQTVLLSKVL----QANIYLA 324
           +   +      +FF+  +LVPP K+R L + G   ++E  Q    +++L    Q N    
Sbjct: 356 RSRHRPRVSPDLFFIKTILVPPNKYRPLAASGSSDIIEAQQNTSFTRILKLCDQINQISR 415

Query: 325 NAYVNQPDNA------KVIVARWMNLQQSVNVLFDGKNAAGQRDMA----SGICQLLEKK 374
               +  ++A      + ++   + LQ +VN L D      Q   A     GI Q LEKK
Sbjct: 416 ERQGDSTESATRLRDYRDLLQTIVQLQDAVNSLIDRDKNPNQGAAAMQNEDGIKQRLEKK 475

Query: 375 EGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSI 434
           +GLFR+ +MGKRVN+A RSVISPDP +  NEIG+P  FA +LTYPE VT  N  +L+ ++
Sbjct: 476 DGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYRELKQAV 535

Query: 435 INGAEIHPGATHYLDKLSTMRLPPNKKM--RISIGRKLDTSRGAIVQPGKDSDNEFEGKM 492
           ING +I+PGA    +++  +     K +  RI+I   L       + P          K 
Sbjct: 536 INGPDIYPGAAAVENEIGQVVSLKFKGVDERIAIANML-------LSPSNFKIKRSRNKK 588

Query: 493 VYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVH 552
           VYRHL  GD+VL+NRQPTLHKPSIM H  RVL GE+T+RMHYANC+TYNADFDGDEMN+H
Sbjct: 589 VYRHLTTGDIVLMNRQPTLHKPSIMGHRARVLTGERTIRMHYANCNTYNADFDGDEMNLH 648

Query: 553 FPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLL 612
           FPQ+E++RAEA  + + ++QY+  ++G PLR LIQDHI      T +DTF +++++ QLL
Sbjct: 649 FPQNEIARAEAMQLADTDHQYLSATSGKPLRGLIQDHISMGVWFTSRDTFFDKEDYHQLL 708

Query: 613 YSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
           YS                   +I +    ++ L PAI +P+ LWTGKQVI+ ++ +IT
Sbjct: 709 YSC----------LRPENSHTIIDK----IVLLEPAIQRPQKLWTGKQVISTIMLNIT 752


>gi|74830400|emb|CAI39062.1| DNA-directed RNA polymerase III largest subunit [Paramecium
            tetraurelia]
          Length = 1368

 Score =  360 bits (925), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 281/858 (32%), Positives = 409/858 (47%), Gaps = 142/858 (16%)

Query: 366  GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPW 425
            GI Q L+ K G  R  L GKR  +  RSVISPDP LA++++ IP + A  LT PE VT  
Sbjct: 306  GIYQRLKGKRGRLRGNLSGKRAEFTARSVISPDPNLAIDQVTIPQHIACILTVPETVTAL 365

Query: 426  NVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSD 485
            N+ K+RD + NG  I+PGA     KL  +        R  +  KL               
Sbjct: 366  NIKKMRDYVQNGPSIYPGAKFV--KLGGVNYNLQFARRAHLAYKLKI------------- 410

Query: 486  NEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
                G +V RHL   D+V+ NRQP+LH+ S+MA   RV K   TLR +   C+ +NADFD
Sbjct: 411  ----GDVVDRHLLSEDIVIFNRQPSLHRISMMAFRARVDKWH-TLRFNECVCTPFNADFD 465

Query: 546  GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
            GDEMN+H PQ   +R+EA  +++         +G+ L  L+QD + +A L+T KD F +R
Sbjct: 466  GDEMNIHLPQTYEARSEALILMDVKKNLKTIKSGESLVCLLQDFLTTAWLITNKDVFYSR 525

Query: 606  DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
            ++F Q  + +  S S                 +EQ  LP  P I KP+ LWTGKQVI A+
Sbjct: 526  EQFMQ--FCAAFSDS-----------------NEQIDLPA-PTILKPKQLWTGKQVINAL 565

Query: 666  LNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKE 725
            L          V  R         KTR   + ++      KGKL               +
Sbjct: 566  L----------VPNR---------KTRLVLNLEAKESNAFKGKL---------------D 591

Query: 726  VVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYG 783
             +   PG+                  ++  K +LV G I K     +  GL + +     
Sbjct: 592  YLWMDPGDGY----------------VVFDKCELVCGNIGKKVLGASKLGLFYALIRDNS 635

Query: 784  SNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL 843
            +  A +++   ++L + ++  +G T G+ D++  K    +       S    K      +
Sbjct: 636  TQIAASVMQRFAKLSSRWISHYGMTIGIGDVMAPKSLIEQIHQSTEQSYLQCKHYQRSLI 695

Query: 844  ELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKP 903
            + + G  ++   L++++ K +                S + +   S    +L S+     
Sbjct: 696  DADPGLTVEQ-TLEAKVNKTL----------------SDVREQVGSKCQEQLKSD----- 733

Query: 904  TGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWD------ 957
               N + +M   GAKGS VN  Q+   +GQQ + GKRVP   +G+TLP F          
Sbjct: 734  ---NKVLIMYLCGAKGSNVNVAQMIGCVGQQVISGKRVPEGFTGRTLPHFKDCGDRYPNL 790

Query: 958  --WAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK 1015
                P+A GF+ + F TG+   E+YFH MAGREGL DTAVKT+ +GY+QR L+K LE L 
Sbjct: 791  DILHPKAKGFVKNSFYTGMDAIEFYFHNMAGREGLTDTAVKTATTGYMQRRLVKMLEDLH 850

Query: 1016 ISYDYSVRDADG-SIVQFCYGEDGVD---VHQTSFISKFDALAARERGRGRGRNKFCDKG 1071
            I+YD +VR  D   IVQF YGEDG+D   V   + + K   L        R +N+     
Sbjct: 851  IAYDLTVRSCDTKEIVQFRYGEDGLDPLAVEDANEVIKLQNLLTNSFTVLR-KNQILLNK 909

Query: 1072 SHTFVMGRNQEMI----YKKCSGQLDASNAYIMELPDAL-KDNAEKFADKFLSNEMAKQD 1126
             H  +      MI    +KK     +A+     +   AL K   ++ ++K L      Q 
Sbjct: 910  EHMLIKLDELFMIIEERHKKFLENYEATYEKEKKRVQALFKSTNQQVSEKQL------QW 963

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            F++    +F+  +  PG  VG + SQS+GEP+TQMTL TFH AG   M++T G+PRL EI
Sbjct: 964  FIRSWMERFLTMVMAPGTSVGPITSQSIGEPATQMTLKTFHSAGVAGMSITQGVPRLNEI 1023

Query: 1187 LTIASKDIKTPVITCPLL 1204
            +  ASK+IKTP I   L+
Sbjct: 1024 IN-ASKEIKTPQINVKLI 1040



 Score = 43.5 bits (101), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 30/51 (58%)

Query: 11  CPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRKL 61
           CPGHFG+I L +P+Y+   F  +   LK +C+ C   + +  E+ +  +K+
Sbjct: 74  CPGHFGYIPLQLPIYHLGFFTHVVKCLKCLCYKCGQVRLTPDEINQLTQKM 124


>gi|225681892|gb|EEH20176.1| DNA-directed RNA polymerase I subunit RPA1 [Paracoccidioides
            brasiliensis Pb03]
          Length = 1691

 Score =  360 bits (924), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 218/487 (44%), Positives = 295/487 (60%), Gaps = 42/487 (8%)

Query: 748  SEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
            SEE  +I+++ +L+ G++DKAQ   +  GL+H+V ELYG   AG L+  + RL T FL M
Sbjct: 776  SEEGQVIFQDGELLCGILDKAQLGPSPSGLIHSVHELYGHVVAGKLIGIIGRLLTKFLHM 835

Query: 805  HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI-----KLKSE 859
              FTCG+DDL + K  + +RK  L  +E +G+++ L+ + L+    I+P+     +LK  
Sbjct: 836  RAFTCGMDDLRLTKKGDEDRKMILQEAESLGRQIALKYVTLD----INPVDDEEAELKRR 891

Query: 860  IEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKG 919
            +E A+R   D   A  D   +SQ     SS +    L  GL KP   N +  MTTSGAKG
Sbjct: 892  LEDALRD--DEKQAGLDAVYSSQAAT-VSSEISAACLPLGLEKPFPWNQMQAMTTSGAKG 948

Query: 920  SKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEY 979
            + VN   IS +LGQQ LEG+RVP M+SGKTLPSF P++ +  AGG+I  RFLTG++PQEY
Sbjct: 949  TVVNANLISCNLGQQILEGRRVPVMISGKTLPSFKPFETSLMAGGYISGRFLTGIKPQEY 1008

Query: 980  YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD-ADGSIVQFCYGEDG 1038
            YFH MAGREGL+DTAVKTSRSGYLQRCLIK +E LK  YD SVR+  DGS++QF YGEDG
Sbjct: 1009 YFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDNSVRETTDGSVIQFLYGEDG 1068

Query: 1039 VDVHQTSFISKFDALAARERG---RGRGRNKFCDKGSHTFV-MGRNQEMIYKK------- 1087
            +++ +   +  F  LA           G ++F   GS       RN    ++K       
Sbjct: 1069 LEITKQKHLQDFSFLAQNYWTVLEELNGSDEFTRIGSDAAAEWNRNAVKKFRKTRKLDCV 1128

Query: 1088 -----------CSGQLDASNAYIMELPDALKDNAEK-FADKF-LSNEMAKQDFLKLVKHK 1134
                       C G    S  + M L    K+N +K   +K  + + ++K  F K++  K
Sbjct: 1129 DPALSLFAPGSCYGS--TSETFAMALRKYQKENPDKQLREKGKVEDGISKGSFAKVMNMK 1186

Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
            ++ S+ +PGE VG++A QS+GEPSTQMTLNTFHLAG    NVTLGIPRL+EI+  AS  I
Sbjct: 1187 YMRSVVEPGESVGIVAGQSIGEPSTQMTLNTFHLAGHSTKNVTLGIPRLREIVMTASSQI 1246

Query: 1195 KTPVITC 1201
             TP +T 
Sbjct: 1247 LTPTMTA 1253



 Score =  358 bits (920), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 246/718 (34%), Positives = 366/718 (50%), Gaps = 76/718 (10%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    + C GH GHI+L V VYN   F+ L+ LL+  C +CH F+ SR +V+    K
Sbjct: 63  CTTCRLNSWSCNGHSGHIELPVHVYNVTFFDQLFRLLRAQCVYCHRFRMSRVDVKSYACK 122

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCS--MVTPRGNY-----DNVRNLK 113
           + L+  G I  A ++D        NP      ++       +  R  Y      NV+ ++
Sbjct: 123 MRLLQYGLIEEAAAIDGMGSRGKGNPGSGSEDSEDEDEEDFIRRRDAYVKRCVYNVK-MR 181

Query: 114 PQEWTSLQFAEAKLALLQ-------FLKIETT--KCGNCKAKNPRISKPTFGWIHMNGMP 164
            ++   L   +  +A+ +       FLK  T   KC +C   +P   +  +  I    +P
Sbjct: 182 NKDQNFLYGVKNPVAMERRRDIVRAFLKDITAVKKCASCSGISPPFRRDKYSKIFKMPLP 241

Query: 165 HADIRANLIRGCNLGETFSGGEEEKDL----------GASSDVDAP---ETHSFNGTFPG 211
                A    G ++       +E  DL          G   D +A    ++H        
Sbjct: 242 QKAKIAMTEAGFHIPNPLLLMKEANDLSKKHGNSYMNGFPDDDNASISTDSHGAEQQITM 301

Query: 212 TQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPS-DVKDIIEKLWENEFELCSFISDMQQ 270
                A+  ++GS   PS    Q+       +PS +V   +  L+E E E+ + + D + 
Sbjct: 302 GNAVLAQVEERGSRNKPSDHGAQQ------FMPSPEVYASLRLLFEREQEVLNLVYDSRP 355

Query: 271 QGFGKK-AGHSIFFLGVVLVPPIKFR-LPSKGGDSVMEHPQTVLLSKVL----QANIYLA 324
           +   +      +FF+  +LVPP K+R L + G   ++E  Q    +++L    Q N    
Sbjct: 356 RSRHRPRVSPDLFFIKTILVPPNKYRPLAASGSSDIIEAQQNTSFTRILKLCDQINQISR 415

Query: 325 NAYVNQPDNA------KVIVARWMNLQQSVNVLFDGKNAAGQRDMA----SGICQLLEKK 374
               +  ++A      + ++   + LQ +VN L D      Q   A     GI Q LEKK
Sbjct: 416 ERQGDSTESATRLRDYRDLLQTIVQLQDAVNSLIDRDKNPNQGAAAMQNEDGIKQRLEKK 475

Query: 375 EGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSI 434
           +GLFR+ +MGKRVN+A RSVISPDP +  NEIG+P  FA +LTYPE VT  N  +L+ ++
Sbjct: 476 DGLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYRELKQAV 535

Query: 435 INGAEIHPGATHYLDKLSTMRLPPNKKM--RISIGRKLDTSRGAIVQPGKDSDNEFEGKM 492
           ING +I+PGA    +++  +     K +  RI+I   L       + P          K 
Sbjct: 536 INGPDIYPGAAAVENEIGQVVSLKFKGVDERIAIANML-------LSPSNFKIKRSRNKK 588

Query: 493 VYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVH 552
           VYRHL  GD+VL+NRQPTLHKPSIM H  RVL GE+T+RMHYANC+TYNADFDGDEMN+H
Sbjct: 589 VYRHLTTGDIVLMNRQPTLHKPSIMGHRARVLTGERTIRMHYANCNTYNADFDGDEMNLH 648

Query: 553 FPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLL 612
           FPQ+E++RAEA  + + ++QY+  ++G PLR LIQDHI      T +DTF +++++ QLL
Sbjct: 649 FPQNEIARAEAMQLADTDHQYLSATSGKPLRGLIQDHISMGVWFTSRDTFFDKEDYHQLL 708

Query: 613 YSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
           YS             +P     I     +++ L PAI +P+ LWTGKQVI+ ++ +IT
Sbjct: 709 YS-----------CLRPENSHTII---DKIVLLEPAIQRPQKLWTGKQVISTIMLNIT 752


>gi|295671524|ref|XP_002796309.1| DNA-directed RNA polymerase I subunit RPA1 [Paracoccidioides sp.
            'lutzii' Pb01]
 gi|226284442|gb|EEH40008.1| DNA-directed RNA polymerase I subunit RPA1 [Paracoccidioides sp.
            'lutzii' Pb01]
          Length = 1691

 Score =  360 bits (924), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 218/487 (44%), Positives = 296/487 (60%), Gaps = 42/487 (8%)

Query: 748  SEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
            SEE  +I+++ +L+ G++DKAQ   +  GL+H+V ELYG   AG L+  + RL T FL M
Sbjct: 776  SEEGQVIFQDGELLCGILDKAQLGPSPSGLIHSVHELYGHVVAGKLIGIIGRLLTKFLHM 835

Query: 805  HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI-----KLKSE 859
              FTCG+DDL + K  + +RK  L  +E +G+++ L+ + L    +I+P+     +LK  
Sbjct: 836  RAFTCGMDDLRLTKKGDEDRKMILQEAESLGRQIALKYVTL----DINPVDDEEAELKRR 891

Query: 860  IEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKG 919
            +E A+R   D   A  D   +SQ     SS +    L  GL KP   N +  MTTSGAKG
Sbjct: 892  LEDALR--DDEKQAGLDAVCSSQAAT-VSSEISAACLPLGLEKPFPWNQMQAMTTSGAKG 948

Query: 920  SKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEY 979
            + VN   IS +LGQQ LEG+RVP M+SGKTLPSF P++ +  AGG+I  RFLTG++PQEY
Sbjct: 949  TVVNANLISCNLGQQILEGRRVPVMISGKTLPSFKPFETSLMAGGYISGRFLTGIKPQEY 1008

Query: 980  YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD-ADGSIVQFCYGEDG 1038
            YFH MAGREGL+DTAVKTSRSGYLQRCLIK +E LK  YD SVR+ +DGS++QF YGEDG
Sbjct: 1009 YFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLKAEYDNSVRETSDGSVIQFLYGEDG 1068

Query: 1039 VDVHQTSFISKFDALAARERG---RGRGRNKFCDKGSHTFV-MGRNQEMIYKK------- 1087
            +++ +   +  F  LA           G ++F   GS       RN    ++K       
Sbjct: 1069 LEITKQKHLQDFSFLAQNYWTVLEELNGSDEFTRIGSDAAAEWNRNAIKKFRKTRKLDCI 1128

Query: 1088 -----------CSGQLDASNAYIMELPDALKDNAEK-FADKF-LSNEMAKQDFLKLVKHK 1134
                       C G    S  + M L    K+N +K   +K  + + ++K  F K++  K
Sbjct: 1129 DPALSIFVPGSCYGS--TSETFAMALRKYQKENPDKQLREKGKVEDGISKGSFAKVMNMK 1186

Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
            ++ S+ +PGE VG++A QS+GEPSTQMTLNTFHLAG    NVTLGIPRL+EI+  AS  I
Sbjct: 1187 YMRSVVEPGESVGIVAGQSIGEPSTQMTLNTFHLAGHSTKNVTLGIPRLREIVMTASSQI 1246

Query: 1195 KTPVITC 1201
             TP +T 
Sbjct: 1247 LTPTMTA 1253



 Score =  357 bits (917), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 238/717 (33%), Positives = 365/717 (50%), Gaps = 74/717 (10%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    + C GH GHI+L V VYN   F+ L+ LL+  C +CH F+ SR +++    K
Sbjct: 63  CTTCRLNSWSCNGHSGHIELPVHVYNVTFFDQLFRLLRAQCVYCHRFRMSRVDIKSYACK 122

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVR------NLKP 114
           + L+  G I  A ++D        NP      ++        R     V+       ++ 
Sbjct: 123 MRLLQYGLIEEAAAIDGMGSRSKGNPVSGSEDSEDEDEEDFIRRQDAYVKRCIYNVKMRN 182

Query: 115 QEWTSLQFAEAKLALLQ-------FLKIETT--KCGNCKAKNPRISKPTFGWIHMNGMPH 165
           ++   L   +  +A+ +       FLK  T   KC +C   +P   +  +  I    +P 
Sbjct: 183 KDQNFLYGVKNPVAIERRRDIVRAFLKDITAVKKCASCSGISPPFRRDKYSKIFKMPLPQ 242

Query: 166 ADIRANLIRGCNLGETFSGGEEEKDL----------GASSDVDAP---ETHSFNGTFPGT 212
               A    G ++       +E  DL          G   D +A    ++H         
Sbjct: 243 KAKIAMTEAGFHIPNPLLLMKEANDLSKKHGNSYMNGFPDDDNASVSTDSHGAEQQITMG 302

Query: 213 QDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPS-DVKDIIEKLWENEFELCSFISDMQQQ 271
               A+  ++GS   PS    Q+       +PS +V   +  L+E E E+ + + D + +
Sbjct: 303 NAVLAQVEERGSRNKPSDQGAQQ------FMPSPEVYASLRLLFEREQEVLNLVYDSRPR 356

Query: 272 GFGK-KAGHSIFFLGVVLVPPIKFR-LPSKGGDSVMEHPQTVLLSKVL----QANIYLAN 325
              + +    +FF+  +LVPP K+R + + G   ++E  Q    +++L    Q N     
Sbjct: 357 SKHRPRVSPDLFFIKTILVPPNKYRPIAASGSSDIIEAQQNTSFTRILKLCDQINQISRE 416

Query: 326 AYVNQPDNA------KVIVARWMNLQQSVNVLFDGKNAAGQRDMA----SGICQLLEKKE 375
              +  +++      + ++   + LQ +VN L D      Q   A     GI Q LEKK+
Sbjct: 417 RQGDSTESSTRLRDYRDLLQTIVQLQDAVNSLIDRDKNPNQGAAAMQNEDGIKQRLEKKD 476

Query: 376 GLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSII 435
           GLFR+ +MGKRVN+A RSVISPDP +  NEIG+P  FA +LTYPE VT  N  +L+ ++I
Sbjct: 477 GLFRKNMMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNYRELKQAVI 536

Query: 436 NGAEIHPGATHYLDKLSTMRLPPNKKM--RISIGRKLDTSRGAIVQPGKDSDNEFEGKMV 493
           NG +I+PGA    +++  +     K +  RI+I   L       + P          K V
Sbjct: 537 NGPDIYPGAAAVENEIGQVVSLKFKGVDERIAIANML-------LSPSNFKIKRSRNKKV 589

Query: 494 YRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHF 553
           YRHL  GD+VL+NRQPTLHKPSIM H  RVL GE+T+RMHYANC+TYNADFDGDEMN+HF
Sbjct: 590 YRHLTTGDIVLMNRQPTLHKPSIMGHRARVLTGERTIRMHYANCNTYNADFDGDEMNLHF 649

Query: 554 PQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLY 613
           PQ+E++RAEA  + + ++QY+  ++G PLR LIQDHI      T +DTF +++++ QLLY
Sbjct: 650 PQNEIARAEAMQLADTDHQYLSATSGKPLRGLIQDHISMGVWFTSRDTFFDKEDYHQLLY 709

Query: 614 SSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
           S             +    V+     ++++ + PAI +P+ LWTGKQ+I+ ++ +IT
Sbjct: 710 S---------CLRPENSHTVI-----EKIVLMEPAIQRPQKLWTGKQIISTIMLNIT 752


>gi|302348974|ref|YP_003816612.1| DNA-directed RNA polymerase subunit A [Acidilobus saccharovorans
            345-15]
 gi|302329386|gb|ADL19581.1| DNA-directed RNA polymerase subunit A [Acidilobus saccharovorans
            345-15]
          Length = 889

 Score =  360 bits (924), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 265/820 (32%), Positives = 398/820 (48%), Gaps = 150/820 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            L PSDV++ +EK+ +++ EL  +          K A      L V+ VPP+  R PS   
Sbjct: 183  LTPSDVRERLEKIPDDDVELLGWDP--------KSARPEWAVLTVLPVPPLSVR-PSITM 233

Query: 302  DS--VMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGK---- 355
            +S    E   T  L+++++ N  L N +++      +I   W  LQ  +    D +    
Sbjct: 234  ESGSRAEDDLTHALAEIVRQNERLKN-FISSSAPESMIEEAWQALQNVIAAYIDNELPNI 292

Query: 356  ---NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYF 412
               +  G++ + + + Q L+ KEG  R  L GKRVN++ R+VISPDP +++NE+G+P   
Sbjct: 293  YQLSHRGRKQLKT-LAQRLKGKEGRLRGNLNGKRVNFSSRTVISPDPLISINEVGVPIEV 351

Query: 413  ALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDT 472
            A  LT P  VT +N+ + R  ++NG    PGAT    K   ++L    +  +   R+L  
Sbjct: 352  AKILTVPMVVTKFNIEEARKYVLNGPYQWPGATIVYKKREGVKLDLRYQRNL---RQLAE 408

Query: 473  SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 532
            S                G +V RHL DGD+VL NRQP+LH+ SIM H VRV+ G +T R+
Sbjct: 409  SLEV-------------GDIVERHLIDGDIVLFNRQPSLHRMSIMGHKVRVMPG-RTFRL 454

Query: 533  HYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVS 592
            +   C+ YNADFDGDEMN+H P+ E +RAEA N++   N  + P  G P+    QD+I  
Sbjct: 455  NLLVCAPYNADFDGDEMNLHVPRLEEARAEALNLLLVENHILTPRYGGPIIGGRQDYISG 514

Query: 593  AALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKP 652
            A LLT K T  +R+   +LL ++        S++G+              LP  PAI KP
Sbjct: 515  AYLLTVKTTLFDREAVGRLLAAA--------SYSGE--------------LP-EPAILKP 551

Query: 653  EPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKT 712
             PLWTGKQ+++                    LP DF          S R K + G L   
Sbjct: 552  RPLWTGKQLVSLF------------------LPSDF--------NFSGRAKINAGDLKCD 585

Query: 713  NKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFA-- 770
                                           E    +  ++I +  L+ GV DK      
Sbjct: 586  G------------------------------EDCFFDSYVVIRRGRLLEGVFDKNTIGAE 615

Query: 771  -DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLH 829
                ++H +   YG+  A  LL  + R+F   L++ GF+  + D+               
Sbjct: 616  QPESVLHYIALEYGNAAARQLLDTMYRMFIRMLELRGFSISISDI--------------- 660

Query: 830  GSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGG-----GDAAVAYFDMKMTSQLN 884
               EI K    +  ++ + A+ D +KL   IE+   G      G       ++K+  +L 
Sbjct: 661  ---EIPKEARDKIAKMTEEAKEDVMKL---IEQYRNGTLEIIPGRTLEESLELKIIQRLQ 714

Query: 885  KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRM 944
            K    +    +   G + P    +I  M  +GA+GS +N  Q+++ LGQQ + G+R+ R 
Sbjct: 715  KLRDDAGKTAI---GYMNPFNNAFI--MARTGARGSDINITQMAAMLGQQTVRGRRIVRG 769

Query: 945  VSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQ 1004
               +TLP F P D +P A GF++  F  GL+P E +FH   GREGLVDTA+KTS+SGY+Q
Sbjct: 770  FRTRTLPHFRPGDLSPEARGFVVSNFRDGLKPHEVFFHAAGGREGLVDTALKTSQSGYMQ 829

Query: 1005 RCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT 1044
            R LI  L+ L ++YD +VRD+  +I+QF YGEDGVD  +T
Sbjct: 830  RRLINALQDLHVAYDGTVRDSQDNIIQFRYGEDGVDPQKT 869



 Score = 48.9 bits (115), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C  CG  +  CPGHFG IDL  PV  P L + +Y LL+  C  C
Sbjct: 66  CPVCGNTRQDCPGHFGKIDLARPVVLPHLGDKIYQLLQSTCRSC 109


>gi|402078175|gb|EJT73524.1| DNA-directed RNA polymerase I subunit RPA1 [Gaeumannomyces graminis
            var. tritici R3-111a-1]
          Length = 1726

 Score =  358 bits (919), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 216/500 (43%), Positives = 290/500 (58%), Gaps = 48/500 (9%)

Query: 747  LSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
            + E  ++    + + G++DKAQ   +  GL+H+V E+YG   AG LLS+L RL T +L M
Sbjct: 782  VEEGHVMFRDGEFISGILDKAQLGPSSGGLIHSVHEVYGPAIAGKLLSSLGRLLTRYLNM 841

Query: 805  HGFTCGVDDLLILKDKERERKNHLH-GSEEIGKRVHLEALELEDGA--EIDPIKLKSEIE 861
              FTCG+DDL +    E +RK  +  G+  +G  V  + + L+  A    DP +L   +E
Sbjct: 842  RAFTCGMDDLKLTAQGEADRKRIIETGAHTVGLEVAAKYVSLDKQAPGSTDP-ELLRRLE 900

Query: 862  KAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSK 921
            + MR   D+     D  M S  +K  S+++    L  GL K   KN +  MT SGAKG +
Sbjct: 901  EVMRD--DSKQEGLDALMNSG-SKDMSTAITKACLPAGLEKQFPKNQMQAMTVSGAKGGQ 957

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            VN   IS +LGQQ LEG+RVP MVSGK+LP F P++   RAGG+I++RFLTG+RPQEYYF
Sbjct: 958  VNANLISCNLGQQVLEGRRVPLMVSGKSLPCFKPFETNIRAGGYIVNRFLTGIRPQEYYF 1017

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV 1041
            H MAGREGL+DTAVKTSRSGYLQRCLIK +E L++ YD SVRD+DGS+VQF YGEDG+DV
Sbjct: 1018 HHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLEVGYDNSVRDSDGSLVQFLYGEDGLDV 1077

Query: 1042 HQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIME 1101
             +  +++ F  +    +      N   D  +      R++ M   + + +   +N    E
Sbjct: 1078 AKQKYLTDFTFVLQNLKSEVAQLN-IADPRTEPLFDQRDEIMKQNRSNVKRAKANPMFAE 1136

Query: 1102 LP-DALKDNA-------EKFADKFLS----------------NEMAKQDFL--------- 1128
             P +A+ + A       EKF DK  S                    +QD           
Sbjct: 1137 DPVNAILNPALHAFATSEKFFDKMSSYLKDNPDGLVKEKDKEKNAQRQDLSLPSSRARLG 1196

Query: 1129 -----KLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRL 1183
                 K++  K++ SL  PGE VG++A QSVGEPSTQMTLNTFHLAG    NVTLGIPRL
Sbjct: 1197 RKLAEKVLSAKYMRSLVHPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHSAKNVTLGIPRL 1256

Query: 1184 QEILTIASKDIKTPVITCPL 1203
            +E+L  AS  I TP +T  L
Sbjct: 1257 REVLMTASTKISTPAMTLIL 1276



 Score =  331 bits (849), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 194/447 (43%), Positives = 263/447 (58%), Gaps = 40/447 (8%)

Query: 242 LLPSDVKDIIEKLWENEFELCS-FISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKG 300
           L   +V + +  L++ E E+ S F +        KK    +FF+  VLVPP ++R  ++ 
Sbjct: 332 LTSREVMERLNLLFKKEHEVLSLFYNSKPSSKSSKKLAADLFFIQTVLVPPSRYRPEART 391

Query: 301 GDS-VMEHPQTVLLSKVLQANIYLANAYVNQPD-----------NAKVIVARWMNLQQSV 348
           GD+ V E  Q  L   VL++   +   + +  D           +  V+   W  +Q SV
Sbjct: 392 GDAQVAEAQQNNLYKMVLRSANKVTQTFRDLQDPNSMLSRRHGGDNTVLYEAWTEVQNSV 451

Query: 349 NVLFDG-KN---AAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVN 404
           N L D  KN    A  +    GI Q LEKKEGLFR+ +MGKRVNYA RSVISPDP +  N
Sbjct: 452 NSLIDSTKNPAQGAAAKGAEEGIKQKLEKKEGLFRKNMMGKRVNYAARSVISPDPNIETN 511

Query: 405 EIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK--KM 462
           EIG+PP FA +LTYPE VT  N   ++ ++ING +  PGAT   ++   +    NK  + 
Sbjct: 512 EIGVPPVFARKLTYPEPVTSHNFKDMQQAVINGPDKWPGATAIENENGQVVNLRNKSPEE 571

Query: 463 RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
           R S+  +L       + P  ++      K V+RH+ +GDVVL+NRQPTLHKPSIM H VR
Sbjct: 572 RASLANQL-------LAPTSNNSGGMRNKKVHRHISNGDVVLMNRQPTLHKPSIMGHRVR 624

Query: 523 VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
           VL GEKT+RMHYANC+TYNADFDGDEMN+HFPQ+E++R EA  + + ++QY+  + G PL
Sbjct: 625 VLPGEKTIRMHYANCNTYNADFDGDEMNMHFPQNEIARTEALQLADTDHQYISGTAGKPL 684

Query: 583 RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
           R LIQDH+  +  L  KDTFL+R  + +L+Y++    SG             I R   E+
Sbjct: 685 RGLIQDHLSVSVALCNKDTFLDRGAYHELVYNALRPESG------------HILRERIEL 732

Query: 643 LPLLPAIWKPEPLWTGKQVITAVLNHI 669
           +P  PAI KP P WTGKQVIT VL +I
Sbjct: 733 VP--PAIIKPFPRWTGKQVITTVLRNI 757



 Score = 67.0 bits (162), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 42/76 (55%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC      CPGH GHI+L VPVY+P+  +    LL+  C +CH F+  R E+ + V  
Sbjct: 62  CTTCNLGPSSCPGHPGHIELPVPVYHPVFMDQTLRLLRAQCAYCHKFRLRRTEIHRFVCL 121

Query: 61  LELIIKGDIIAAKSLD 76
             L+  G +  A+ LD
Sbjct: 122 FRLLQYGLLAEARILD 137


>gi|389585038|dbj|GAB67769.1| DNA-directed RNA polymerase III largest subunit [Plasmodium cynomolgi
            strain B]
          Length = 1969

 Score =  358 bits (918), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 257/815 (31%), Positives = 399/815 (48%), Gaps = 153/815 (18%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDS--VMEHPQTVLLSKVLQ---------ANIYLANAYVNQ 330
              +  +LVPP   R PS   D     E   T +LS++ Q         +N Y  N ++  
Sbjct: 308  LLITALLVPPNTIR-PSVIIDEHGTAEDDLTCILSEITQLNNTINNQCSNGYQTNQFLGN 366

Query: 331  PDNAKVIVARWMNLQQ-SVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNY 389
             +  ++   R++N    +V+ L   +N +       GICQ L+ KEG FR  L GKRV++
Sbjct: 367  VEFLQLQTTRFINSDSPAVSQLLATQNISKP---GRGICQRLKGKEGRFRCNLSGKRVDF 423

Query: 390  ACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLD 449
            + R+VISPDP ++++E+ IP   A+RLTYPE+V  +N+ KL+  I NG    PGA + + 
Sbjct: 424  SSRTVISPDPNISIDEVVIPEIIAMRLTYPEKVNRYNIEKLKKLIKNGTNTWPGANYIIK 483

Query: 450  KLSTMRLPPNKKMRISIGRKLDTSRGAI---VQPGKDSDNEFE---------------GK 491
            K    R         S G    +   +I   V+ G  + N+                 G 
Sbjct: 484  KGCNGR-------SCSRGGGFSSQGDSIIDVVKRGNPAINKISLKYANKKFVIENLQVGD 536

Query: 492  MVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNV 551
            +V RHL +GD+VL NRQP+LH+ SIM H  RV+K  KT R +   CS YNADFDGDEMN+
Sbjct: 537  IVERHLVNGDIVLFNRQPSLHRMSIMCHKARVMK-YKTFRFNECVCSPYNADFDGDEMNL 595

Query: 552  HFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL 611
            H PQ E +RAEA  ++N  +  + P NG+ + +L QD + ++ ++T KDTFL+RD FC L
Sbjct: 596  HVPQTEEARAEALYLMNVKHNLITPKNGEVMIALTQDFLSASYVITNKDTFLDRDSFC-L 654

Query: 612  LYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITR 671
            L S                     S ++ ++   +PAI KP+ LWTGKQ+I+ ++     
Sbjct: 655  LCS-------------------YFSDAKVDIELPVPAILKPKELWTGKQLISVLI----- 690

Query: 672  GRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKP 731
                                      + +RK+N         + +  K+G  K +     
Sbjct: 691  --------------------------KPNRKENTIINFELKEREYSTKNGDLKHMC---- 720

Query: 732  GEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGT 789
                           L++  +  YK++L+ G + K     + YGL + +     S  A  
Sbjct: 721  ---------------LNDSYVCFYKSELICGSLGKKVLGSSKYGLFYYLIHHNSSYVALK 765

Query: 790  LLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLH-GSEEIGKRVHL---EALEL 845
            +++  S+L + +    G T G+DD+       +++K+ L  G E++ K + L   + +++
Sbjct: 766  IMNRFSKLTSRYFTNKGMTIGIDDVTPSDTLIQKKKDLLQAGYEKVNKEILLYNEKKMQI 825

Query: 846  EDGAEID---PIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLK 902
            + G  ++    IK+K+ ++      G     Y D      LNK                 
Sbjct: 826  QPGCTLEETLEIKVKNILDDLRNDAGKTCNQYLD-----HLNKPL--------------- 865

Query: 903  PTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRA 962
                    +M  SGAKG+ +N  Q+ + +GQQ + G+R+      +TLP F+       +
Sbjct: 866  --------IMFNSGAKGALINIAQMIACVGQQNVTGQRIQNGFINRTLPHFNIHCKDSES 917

Query: 963  GGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSV 1022
             GF+ + F TGL P E++FH M+GREGLVDTAVKT+ +GY+QR L+K LE L I YDYSV
Sbjct: 918  RGFVQNSFYTGLNPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSV 977

Query: 1023 RDADGSIVQFCYGEDGVDV----HQTSFISKFDAL 1053
            R  D  IVQF YG+D ++     +  S+  +FD +
Sbjct: 978  RSCDKQIVQFIYGDDALNPSYVDNNNSYAHQFDKI 1012



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 53/72 (73%), Gaps = 1/72 (1%)

Query: 1134 KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKD 1193
            K+   ++ PG+ VG +++QS+GEP TQMTL TFH AG   MNVTLG+PR++EI+  AS  
Sbjct: 1478 KYFKYISAPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-ASST 1536

Query: 1194 IKTPVITCPLLV 1205
            I+TP++  PL V
Sbjct: 1537 IQTPILNIPLQV 1548


>gi|392592741|gb|EIW82067.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Coniophora puteana RWD-64-598 SS2]
          Length = 1699

 Score =  358 bits (918), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 219/500 (43%), Positives = 289/500 (57%), Gaps = 57/500 (11%)

Query: 748  SEEKLLIYKNDLVRGVIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH 805
            +E+ ++    DLV GV+DK+ F   DYGLVH+V ELYG++ AG LL  LSRLFT FLQ  
Sbjct: 784  TEDNVIFVDGDLVSGVLDKSAFGATDYGLVHSVYELYGADVAGKLLGILSRLFTKFLQHR 843

Query: 806  GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID--PIKLKSEIEKA 863
             FTC +DDL +  D ++ R + L  +   G    +E      G + +  P  L S +   
Sbjct: 844  AFTCRMDDLALTPDADKRRSDILDDACNFGTDAAIENFPSLVGLDKEDVPQALASLLRDI 903

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
            +R   D  +A  D+ + +++   T S V +  +  GLL+    N + +MT SGAKGS VN
Sbjct: 904  LRD--DNKMAGLDVTVRNKMGGLTKS-VEDACVPGGLLRKFPYNHMQMMTLSGAKGSAVN 960

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
             +QIS  LGQQELEG+RVP MVSGK+LPSF   +    AGG++  RFLTG++PQE+YFHC
Sbjct: 961  ARQISCGLGQQELEGRRVPLMVSGKSLPSFKALETKAIAGGYVASRFLTGIKPQEFYFHC 1020

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGL+DTAVKTSRSGYLQRCLIK+LE L++ YD++VR +D SI QF YG DG+DV +
Sbjct: 1021 MAGREGLIDTAVKTSRSGYLQRCLIKHLEGLRVHYDHTVRGSDMSIYQFHYGGDGLDVTK 1080

Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFV-MGRNQE-------MIYKKCSGQLDAS 1095
               + +F  +A  E+        F ++     V    N+E        + KK + + D  
Sbjct: 1081 QKHLYQFGFVAQNEKS-------FVNRLQPAEVAQAINEEDAIAYMKKVLKKSAEREDKH 1133

Query: 1096 NAYIMELPDA----------LKDNAEKFADKFLS-------------------------N 1120
                 E+ D           L   +EKFA    S                         +
Sbjct: 1134 TPAPREVYDPALNKFTPSRYLGSTSEKFASALDSYTKTNPHNLLRSKKLHHPLPIKKRKD 1193

Query: 1121 EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGI 1180
             M+   F  L+  K++ SLA PGE VGLLASQ VGEPSTQMTLNTFH AG G  NVTLGI
Sbjct: 1194 NMSVNHFKMLMNVKYMRSLADPGEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVTLGI 1253

Query: 1181 PRLQEILTIASKDIKTPVIT 1200
            PRL+EI+  AS+  KTP +T
Sbjct: 1254 PRLREIVMTASQKPKTPSMT 1273



 Score =  350 bits (898), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 200/454 (44%), Positives = 271/454 (59%), Gaps = 46/454 (10%)

Query: 244 PSDVKDIIEKLWENEFELCSFI-------SDMQQQGFGKKAGHSIFFLGVVLVPPIKFRL 296
           P + +  I +L++NE  LCS +       + +   G    A   +FF+ VV VPP +FR 
Sbjct: 325 PEECRAHIRRLFKNESTLCSLLYGRHGPFAPLTPTGLSL-ASADMFFMEVVPVPPTRFRP 383

Query: 297 PSKGGDSVMEHPQTVLLSKVLQANIYLANAYVN------QPDNAKVIVARW---MNLQQS 347
           P + G+++ EH Q  LLSKVL ++  + +A  N        D ++     W   + +Q  
Sbjct: 384 PVRMGETLFEHQQNELLSKVLNSSYRVRDANANVRAKDATKDQSRAEEYLWDSVVQMQID 443

Query: 348 VNVLFDG-KNAAGQRD---MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
           VN   D  KN A  R      +G+ Q LEKKEGLFR+ +MGKRVNYA RSVISPD  +  
Sbjct: 444 VNSFIDSNKNPAPVRQGKLPPAGVKQGLEKKEGLFRKHMMGKRVNYAARSVISPDVNIEP 503

Query: 404 NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGAT--HYLD----KLSTMRLP 457
           NEIGIPP FA +LTYPE VTP N  +LR  +I G + +PGAT   Y D     L  M + 
Sbjct: 504 NEIGIPPVFARKLTYPEPVTPINFHELRQYVIAGPKNYPGATMVEYEDGHQQSLENMTI- 562

Query: 458 PNKKMRISIGRKLDTS-RGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
              + R +I  +L T   G+  + G  +      K VYRHL +GD++++NRQPTLHKPS+
Sbjct: 563 ---EQRTAIANQLLTPYNGSDNRRGLATKTASVNKKVYRHLLNGDILILNRQPTLHKPSM 619

Query: 517 MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
           M H  R+L+GEKT+RMHYANC++YNADFDGDEMN+HFPQ++V+RAEA  I N +NQY+ P
Sbjct: 620 MCHKARILRGEKTIRMHYANCNSYNADFDGDEMNIHFPQNQVARAEAMLIANTDNQYLVP 679

Query: 577 SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
           ++G PLR LIQDH+V+   +T +D F  R+E+ QLLY +      +              
Sbjct: 680 TSGKPLRGLIQDHVVAGVWMTCQDAFFTREEYFQLLYGALRPEDQIDQV----------- 728

Query: 637 RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
               + LP  P IWKP P WTGKQ+I+ VL +IT
Sbjct: 729 -GRLKTLP--PTIWKPAPRWTGKQIISTVLKNIT 759



 Score = 77.0 bits (188), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 44/76 (57%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC    F CPGHFGHI+L +PV++PL     Y +L+  C FCH FK  R  + K   K
Sbjct: 63  CATCRLSYFTCPGHFGHIELPLPVFHPLFMVNAYNILRATCLFCHKFKLPRTVLCKYAAK 122

Query: 61  LELIIKGDIIAAKSLD 76
           L L+  G + AA  +D
Sbjct: 123 LRLLEHGLLEAAHGID 138


>gi|391343926|ref|XP_003746256.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit RPC1-like [Metaseiulus occidentalis]
          Length = 1386

 Score =  358 bits (918), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 296/964 (30%), Positives = 451/964 (46%), Gaps = 177/964 (18%)

Query: 287  VLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAK--VIVARW 341
            VLVPP+  R PS   D      E   TV L++++  N  +     ++  NAK  +IV   
Sbjct: 256  VLVPPLCIR-PSVASDFRAGTNEDDLTVKLTEMIFLNDVIER---HRQTNAKPQMIVEDR 311

Query: 342  MNLQQSVNVLFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
              LQ    +  +G+ +     M       GI Q L+ KEG FRQ L GKRV+++ R+VIS
Sbjct: 312  DFLQLQFALYVNGEISGVPLHMQPKRPTKGIIQRLKGKEGRFRQNLSGKRVDFSGRTVIS 371

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PDP L ++++GIP + A  LT+PE VT  N+  ++  ++NG + HPGA ++++  + +  
Sbjct: 372  PDPNLHIDQVGIPVHMAKILTFPEMVTRHNLDLMKKMVMNGPDKHPGA-NFIEGRNKL-- 428

Query: 457  PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
                K  +  G +   ++   V           G +V RHL DGDVVL NRQP+LHK SI
Sbjct: 429  ----KKFLKYGNREQLAQNLRV-----------GDIVERHLTDGDVVLFNRQPSLHKLSI 473

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            MAH   VL   +TLR +   C+ YNADFDGDEMN+H PQ   +RAEA  ++      V P
Sbjct: 474  MAHKAVVLP-HRTLRFNECVCTPYNADFDGDEMNIHMPQTYEARAEAMVLMATTANIVTP 532

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
             NG+PL   IQD I    LLT KD   +R+  C L+ S  V+   + +    P       
Sbjct: 533  RNGEPLIGAIQDFITGGYLLTHKDEMFDRETACHLI-SQFVAGRDVSTTVELPH------ 585

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
                      PAI KP+ LWTGKQ+ + +L                              
Sbjct: 586  ----------PAILKPKVLWTGKQIFSLIL---------------------------KPS 608

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
            K SD + + + K                          K   KN   E   + +  +I +
Sbjct: 609  KSSDVRIHLRAK-------------------------NKNXTKN---EDMCTNDNYVIMR 640

Query: 757  N-DLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVF-LQMHGFTCGV 811
            N +L+ G +DK      +   + + +   Y +  A   +  L+R+   F L   GF+ G+
Sbjct: 641  NSELLCGRMDKGTMGSGSKNSIFYLLLRDYSAQHAADAMWRLARISAFFLLSTRGFSIGI 700

Query: 812  DDL-----LILKDKERERKNHLHGSEEIGKRVHLEALELEDGA----EIDPIKLKSEIEK 862
             D+     L+ + +E  R  +    E I +++    L  + G      ++ + LK E+  
Sbjct: 701  GDVTPGASLVAQKRELVRVGYSRCQEYI-RKLDQGTLPAQPGCTEEQTLEALCLK-ELSS 758

Query: 863  AMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV 922
                 G+          T +L++  S  V+    S+G       ++I++   +   G   
Sbjct: 759  IRDKTGNIC--------TEELHQTCSPLVMALCGSKG-------SFINISQMATCVGQ-- 801

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
              Q IS H         RV      ++LP F      P A GF+ D F TGL P E++FH
Sbjct: 802  --QAISGH---------RVGNGFEDRSLPHFERKTKDPDARGFVEDSFFTGLTPTEFFFH 850

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD-- 1040
             MAGREGLVDTAVKT+ +GY+QR LIK+LE + ++YD SVR + G ++QF YG D +D  
Sbjct: 851  TMAGREGLVDTAVKTAETGYMQRRLIKSLEDMMLNYDSSVRSSTGDVIQFEYGADSLDPA 910

Query: 1041 -VHQTSFISKFDALAARERGRGRGRNKFC-------------------DKGSHTFVMGRN 1080
             +     +  F+ +    +   R  ++                     D+G   + +   
Sbjct: 911  MIEGKDSVVDFNRVLEMVKASNRYPDEIAEDPDTLIELSKQIVREPDFDRGVKRYFIDML 970

Query: 1081 QEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLA 1140
             E I +     +  SN          KD+ + F + +   +   +DF+   K+K++ +  
Sbjct: 971  LEYIER-----VAESNRESWRKLGVTKDSPKIFKEPWRLTKSHLRDFIMTSKNKYLKAKL 1025

Query: 1141 QPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
            +P   +G + +QS+GEP+TQMTL TFH AG   MN+T G+PR++EI+  ASK I TP+IT
Sbjct: 1026 EPATAIGAICAQSIGEPATQMTLKTFHFAGVASMNITQGVPRIKEIIN-ASKAIATPIIT 1084

Query: 1201 CPLL 1204
              LL
Sbjct: 1085 ATLL 1088



 Score = 46.2 bits (108), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF 47
           C+TCG+    C GHFG+IDL  PV++   F     +L+ IC  C H 
Sbjct: 71  CETCGKGLTECVGHFGYIDLECPVFHCGFFRECINILQCICKNCAHI 117


>gi|14591328|ref|NP_143406.1| DNA-directed RNA polymerase subunit A' [Pyrococcus horikoshii OT3]
 gi|3257973|dbj|BAA30656.1| 907aa long hypothetical DNA-directed RNA polymerase subunit A'
            [Pyrococcus horikoshii OT3]
          Length = 907

 Score =  358 bits (918), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 263/827 (31%), Positives = 398/827 (48%), Gaps = 139/827 (16%)

Query: 233  KQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPI 292
            +Q + +   ++P++++D +EK+ + +  L             +K+      L V+ VPP+
Sbjct: 172  EQGNEYKHRMMPTEIRDRLEKIPDKDLPLLGL--------HPEKSRPEWMVLTVLPVPPV 223

Query: 293  KFRLPSKGGDSVM--EHPQTVLLSKVLQANIYL-ANAYVNQPDNAKVIVARWMNLQQSVN 349
              R PS   ++ +  E   T  L  +++ N  L  N     P    +I   W  LQ  V 
Sbjct: 224  TVR-PSITLETGIRAEDDLTHKLVDIIRINNRLRQNIEAGAPQ--LIIEDLWDLLQYHVT 280

Query: 350  VLFDGKNAA-------GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLA 402
               + + +          R + + + Q L+ KEG FR  L GKRVN++ R+VISPDP ++
Sbjct: 281  TYINNETSGVPPAKHKSGRPLKT-LAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMIS 339

Query: 403  VNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM 462
            +NE+G+P   A+ LT PE+VT +N+ KLR  ++NG + +PGA + +D       P  +++
Sbjct: 340  INEVGVPIQIAMELTVPEKVTEFNIEKLRKMVLNGPDKYPGANYVID-------PEGRRI 392

Query: 463  RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
            RI    K + ++   +           G  V RHL DGD+VL NRQP+LH+ SIMAH VR
Sbjct: 393  RIMESNKENLAKMIDI-----------GWTVERHLVDGDIVLFNRQPSLHRMSIMAHRVR 441

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            V+   KT R++ A C  YNADFDGDEMN+H PQ E ++AEA  ++   N  + P  G P+
Sbjct: 442  VMP-YKTFRLNLAVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPI 500

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
               IQDHI    LLT++  +  R+E  Q+L  +GV                     + + 
Sbjct: 501  IGGIQDHISGGYLLTREGAYFTREEVEQMLMFAGV---------------------DIKE 539

Query: 643  LPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRK 702
            LP        +PLW+GK + + +                  LP D   T +  +K  D +
Sbjct: 540  LPEPDKYENGKPLWSGKTIFSLL------------------LPDDL--TVWYRNKLCDEE 579

Query: 703  KNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRG 762
                               +K E +E K  EEK     +   K   +  + I    L+ G
Sbjct: 580  -------------------EKCEALE-KLIEEKLIPDPEEVRKLAYDGFVYIQNGKLLSG 619

Query: 763  VIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLI---- 816
             IDK  +   D  ++  +   YG   A   L  +++L    +   GFT G+DD  +    
Sbjct: 620  AIDKKAYGREDGIILDLIVREYGVERARQFLDQVTKLTIWVITHKGFTTGIDDEDLPEEA 679

Query: 817  ---LKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVA 873
               +++  RE +  +    E  KR  LE L  +   E    K+ + + +A    G  A  
Sbjct: 680  RDRIREIIREAEERVQRLIEAYKRGELEPLPGKSLEETLESKIMAVLAEARDNAGSVAEK 739

Query: 874  YFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQ 933
            Y  M      N H                        +M  +GA+G  +N  Q+++ LGQ
Sbjct: 740  YLGM------NNHA----------------------VIMAKTGARGKILNITQMAALLGQ 771

Query: 934  QELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDT 993
            Q + G+R+ R   G+ L  F P D   RA GF+++ + +GL PQEY+FH M GREGLVDT
Sbjct: 772  QSIRGRRLYRGFKGRVLSHFKPGDLGARAKGFVVNSYKSGLSPQEYFFHAMGGREGLVDT 831

Query: 994  AVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            AV+T++SGY+QR LI  L+ LK+ YD +VRD  G IVQF YGEDGVD
Sbjct: 832  AVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGVIVQFRYGEDGVD 878



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG +   CPGHFGHI+L  PV +      ++ +L+  C  C   K +  E+E+ ++K
Sbjct: 60  CETCGAKAGECPGHFGHIELARPVIHVGFAKTIHRILESTCRECGRIKLTDEEIEEYMKK 119

Query: 61  LEL 63
           LEL
Sbjct: 120 LEL 122


>gi|315230006|ref|YP_004070442.1| DNA-directed RNA polymerase subunit A' [Thermococcus barophilus MP]
 gi|315183034|gb|ADT83219.1| DNA-directed RNA polymerase subunit A' [Thermococcus barophilus MP]
          Length = 906

 Score =  357 bits (917), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 267/828 (32%), Positives = 403/828 (48%), Gaps = 141/828 (17%)

Query: 233  KQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPI 292
            +Q + +   ++P++V+D +EK+ + +  L             +K+      L V+ VPP+
Sbjct: 172  EQGNEYKHRMMPTEVRDRLEKIPDRDLPLLGL--------HPEKSRPEWMVLTVLPVPPV 223

Query: 293  KFRLPSKGGDSVM--EHPQTVLLSKVLQANIYL-ANAYVNQPDNAKVIVARWMNLQQSVN 349
              R PS   +S +  E   T  L  +++ N  L  N     P    +I   W  LQ  V 
Sbjct: 224  TVR-PSITLESGIRAEDDLTHKLVDIIRINNRLKTNIEAGAPQ--LIIEDLWDLLQYHVT 280

Query: 350  VLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
               +    G  AA  +       + Q L+ KEG FR  L GKRVN++ R+VISPDP L++
Sbjct: 281  TYINNETSGVPAAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMLSI 340

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMR 463
            NE+G+P   A+ LT PE+VT +N+ KLR  ++NG E +PGA + +D       P  +++R
Sbjct: 341  NEVGVPLAIAMELTVPEKVTDFNIEKLRKMVLNGPEKYPGANYVID-------PQGRRIR 393

Query: 464  ISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRV 523
            +     ++++R  I      ++    G  V RHL DGD+VL NRQP+LH+ SIMAH VRV
Sbjct: 394  L-----MESNRETI------AEMLDIGWTVERHLMDGDIVLFNRQPSLHRMSIMAHRVRV 442

Query: 524  LKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLR 583
            +   KT R++ A C  YNADFDGDEMN+H PQ E ++AEA  ++   N  + P  G P+ 
Sbjct: 443  MP-YKTFRLNLAVCPPYNADFDGDEMNLHVPQTEEAQAEARILMEVQNHIISPRYGGPII 501

Query: 584  SLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVL 643
              IQDHI    LLT++  +  R E  Q+L  +GV    L                     
Sbjct: 502  GGIQDHISGGYLLTREGAYFTRSEVEQMLMFAGVDIDKL--------------------- 540

Query: 644  PLLPAIWKPEP--------LWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
                    PEP         W+GK + + +                  LP D   T +  
Sbjct: 541  --------PEPDKVEDGIEYWSGKTIFSLL------------------LPDDL--TIWYR 572

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
            +K  D    D  K     K+ ++K     E V                 ++L+ +  +  
Sbjct: 573  NKLCD----DPSKCEPLEKLIEEKLLPDPEEV-----------------RKLAYDGFVYI 611

Query: 756  KN-DLVRGVIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
            +N  L+ G IDK  +   D  ++  +   YG   A   L  +++L    +   GFT  +D
Sbjct: 612  QNGKLLSGAIDKKAYGREDGKILDIIVREYGVERARQFLDQVTKLAIWVITHKGFTTAID 671

Query: 813  DLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
            D  + ++     K  +  +EE  KR+    +E     E++P+  K+ +E+ +     A +
Sbjct: 672  DEDLPEEAMDRIKEIIREAEERVKRL----IEAYKAGELEPLPGKT-LEETLESKIMAVL 726

Query: 873  AYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
            A           +  +  V  + L          N+  +M  +GA+G  +N  Q+++ LG
Sbjct: 727  AE---------ARDNAGKVAEQYLGM-------NNFAVIMAKTGARGKILNITQMAALLG 770

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ + GKR+ R   G+ L  F P D   RA GF+I+ + +GL PQEY+FH M GREGLVD
Sbjct: 771  QQSIRGKRLYRGYRGRVLSHFKPGDLGARARGFVINSYKSGLTPQEYFFHAMGGREGLVD 830

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            TAV+T++SGY+QR LI  L+ LK+ YD +VRD  G IVQF YGEDGVD
Sbjct: 831  TAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQFRYGEDGVD 878



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG R   CPGHFGHI+L  PV +      +Y +L+  C  C   K +  E+E+ ++K
Sbjct: 60  CETCGARYGDCPGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIKLTDEEIEEYMKK 119

Query: 61  LELI 64
            ELI
Sbjct: 120 FELI 123


>gi|337283878|ref|YP_004623352.1| DNA-directed RNA polymerase subunit alpha [Pyrococcus yayanosii CH1]
 gi|334899812|gb|AEH24080.1| DNA-directed RNA polymerase subunit alpha [Pyrococcus yayanosii CH1]
          Length = 907

 Score =  357 bits (916), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 263/829 (31%), Positives = 404/829 (48%), Gaps = 143/829 (17%)

Query: 233  KQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPI 292
            +Q + +   ++P++V+D +EK+ + +  L             +K+      L V+ VPP+
Sbjct: 172  EQGNEYRHRMMPTEVRDRLEKIPDKDLPLLGL--------HPEKSRPEWMVLTVLPVPPV 223

Query: 293  KFRLPSKGGDSVM--EHPQTVLLSKVLQANIYL-ANAYVNQPDNAKVIVARWMNLQQSVN 349
              R PS   ++ +  E   T  L  +++ N  L  N     P    +I   W  LQ  V 
Sbjct: 224  TVR-PSITLETGIRAEDDLTHKLVDIIRINNRLKQNIEAGAPQ--LIIEDLWDLLQYHVT 280

Query: 350  VLFD--------GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYL 401
               +         K+ +G+      + Q L+ KEG FR  L GKRVN++ R+VISPDP +
Sbjct: 281  TYINNETSGIPPAKHKSGR--TLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMI 338

Query: 402  AVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKK 461
            ++NE+G+P   A+ LT PE+VT +N+ KLR  ++NG E +PGA + +D       P  ++
Sbjct: 339  SINEVGVPIEIAMELTVPEKVTEFNIEKLRKMVLNGPEKYPGANYVID-------PEGRR 391

Query: 462  MRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVV 521
            +RI     +D++R  +      ++    G  V RHL DGD+VL NRQP+LH+ SIMAH V
Sbjct: 392  IRI-----MDSNRELL------AERLDIGWTVERHLLDGDIVLFNRQPSLHRMSIMAHRV 440

Query: 522  RVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDP 581
            RV+   KT R++ A C  YNADFDGDEMN+H PQ E ++AEA  ++   N  + P  G P
Sbjct: 441  RVMP-YKTFRLNLAVCPPYNADFDGDEMNLHVPQTEEAQAEARILMEVQNHIISPRYGGP 499

Query: 582  LRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQE 641
            +   IQDHI    LLT++  +  R+E  Q+L  +GV                     + +
Sbjct: 500  IIGGIQDHISGGYLLTREGAYFTREEVEQMLMFAGV---------------------DVK 538

Query: 642  VLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDR 701
             LP        +PLW+GK + + +                  LP D   T +  +K  D 
Sbjct: 539  ELPEPDKYENGKPLWSGKTIFSLL------------------LPDDL--TVWYRNKLCDE 578

Query: 702  KKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLV 760
             +    +     K+ ++K     E V                 ++L+ +  +  +N  L+
Sbjct: 579  PE----RCEALEKLIEEKLMPDPEEV-----------------RKLAYDGFVYIQNGKLL 617

Query: 761  RGVIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDD----- 813
             G IDK  +   D  ++  +   YG   A   L  +++L    +   GFT  +DD     
Sbjct: 618  SGAIDKKAYGREDGIILDLIVREYGVERARQFLDQVTKLAIWVITHKGFTTAIDDEDLPQ 677

Query: 814  --LLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAA 871
              +  +K+  RE +  +    E  +R  LE L  +   E    K+ + + +A    G  A
Sbjct: 678  EAIDRIKEIIREAEERVERLIEAYRRGELEPLPGKTIEETLESKIMAVLAEARDNAGSVA 737

Query: 872  VAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHL 931
              Y  M      + HT                       +M  +GA+G  +N  Q+++ L
Sbjct: 738  ERYLGM------DNHT----------------------VIMAKTGARGKILNITQMAALL 769

Query: 932  GQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLV 991
            GQQ + GKR+ R   G+ L  F P D   RA GF+++ + +GL PQEY+FH M GREGLV
Sbjct: 770  GQQSIRGKRLYRGYRGRVLTHFKPGDLGARARGFVVNSYKSGLTPQEYFFHAMGGREGLV 829

Query: 992  DTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            DTAV+T++SGY+QR LI  L+ LK+ YD +VRD +G IVQF YGEDG+D
Sbjct: 830  DTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPNGVIVQFRYGEDGID 878



 Score = 60.8 bits (146), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG R   CPGHFGHI+L  PV +      ++ +L+  C  C   K +  E+E+ ++K
Sbjct: 60  CETCGARAGECPGHFGHIELARPVIHVGFAKTIHRILESTCRECGRIKLTDEEIEEYMKK 119

Query: 61  LEL 63
           LEL
Sbjct: 120 LEL 122


>gi|14520831|ref|NP_126306.1| DNA-directed RNA polymerase subunit A' [Pyrococcus abyssi GE5]
 gi|5458047|emb|CAB49537.1| rpoA1 DNA-directed RNA polymerase, subunit A' [Pyrococcus abyssi GE5]
 gi|380741373|tpe|CCE70007.1| TPA: DNA-directed RNA polymerase subunit alpha [Pyrococcus abyssi
            GE5]
          Length = 907

 Score =  357 bits (915), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 263/827 (31%), Positives = 398/827 (48%), Gaps = 139/827 (16%)

Query: 233  KQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPI 292
            +Q + +   ++P++++D +EK+ + +  L             +K+      L V+ VPP+
Sbjct: 172  EQGNEYKHRMMPTEIRDRLEKIPDKDLPLLGL--------HPEKSRPEWMVLTVLPVPPV 223

Query: 293  KFRLPSKGGDSVM--EHPQTVLLSKVLQANIYL-ANAYVNQPDNAKVIVARWMNLQQSVN 349
              R PS   ++ +  E   T  L  +++ N  L  N     P    +I   W  LQ  V 
Sbjct: 224  TAR-PSITLETGIRAEDDLTHKLVDIIRINNRLKQNIEAGAPQ--LIIEDLWDLLQYHVT 280

Query: 350  VLFDGKNAA-------GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLA 402
               + + +          R + + + Q L+ KEG FR  L GKRVN++ R+VISPDP ++
Sbjct: 281  TYINNETSGVPPAKHKSGRPLKT-LAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMIS 339

Query: 403  VNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM 462
            +NE+G+P   A+ LT PE+VT +N+ KLR  ++NG + +PGA + +D       P  +++
Sbjct: 340  INEVGVPIQIAMELTVPEKVTEFNIEKLRKMVLNGPDKYPGANYVID-------PEGRRI 392

Query: 463  RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
            RI    + + +R   +           G  V RHL DGD+VL NRQP+LH+ SIMAH VR
Sbjct: 393  RIMESNRENLARMIDI-----------GWTVERHLLDGDIVLFNRQPSLHRMSIMAHRVR 441

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            V+   +T R++ A C  YNADFDGDEMN+H PQ E ++AEA  ++   N  + P  G P+
Sbjct: 442  VMP-YRTFRLNLAVCPPYNADFDGDEMNLHVPQTEEAQAEARILMEVQNHIISPRYGGPI 500

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
               IQDHI    LLT++  +  R+E  Q+L  +GV                     + + 
Sbjct: 501  IGGIQDHISGGYLLTREGAYFTREEVEQMLMFAGV---------------------DIKE 539

Query: 643  LPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRK 702
            LP        +PLW+GK + + +                  LP D   T +  +K  D  
Sbjct: 540  LPEPDKYENGKPLWSGKTIFSLL------------------LPDDL--TVWYRNKLCDEP 579

Query: 703  KNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRG 762
                               ++ E +E K  EEK     +   K   +  + I    L+ G
Sbjct: 580  -------------------ERCEALE-KLIEEKLMPDPEEVRKLAYDGFVYIQNGKLLSG 619

Query: 763  VIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLI---- 816
             IDK  +   D  ++  +   YG   A   L  +++L    +   GFT G+DD  +    
Sbjct: 620  AIDKKAYGREDGIILDLIVREYGVERARQFLDQVTKLTIWVITHKGFTTGIDDEDLPEEA 679

Query: 817  ---LKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVA 873
               +K+  RE +  +    E  KR  LE L  +   E    K+ + + +A    G  A  
Sbjct: 680  RDRIKEIIREAEERVQKLIEAYKRGELEPLPGKTLEETLESKIMAVLAEARDNAGSIAEK 739

Query: 874  YFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQ 933
            Y  M      + HT                       +M  +GA+G  +N  Q+++ LGQ
Sbjct: 740  YLGM------DNHT----------------------VIMAKTGARGKILNITQMAALLGQ 771

Query: 934  QELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDT 993
            Q + GKR+ R   G+ L  F P D   RA GF+++ + +GL PQEY+FH M GREGLVDT
Sbjct: 772  QSIRGKRLYRGFRGRVLSHFKPGDLGARAKGFVVNSYKSGLSPQEYFFHAMGGREGLVDT 831

Query: 994  AVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            AV+T++SGY+QR LI  L+ LK+ YD +VRD  G IVQF YGEDGVD
Sbjct: 832  AVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGVIVQFRYGEDGVD 878



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG +   CPGHFGHI+L  PV +      ++ +L+  C  C   K +  E+E+ ++K
Sbjct: 60  CETCGAKAGECPGHFGHIELARPVIHVGFAKTIHRILESTCRECGRIKLTDEEIEEYMKK 119

Query: 61  LEL 63
           LEL
Sbjct: 120 LEL 122


>gi|240103982|ref|YP_002960291.1| DNA-directed RNA polymerase subunit A' [Thermococcus gammatolerans
            EJ3]
 gi|239911536|gb|ACS34427.1| DNA-directed RNA polymerase subunit A' (rpoA1) [Thermococcus
            gammatolerans EJ3]
          Length = 905

 Score =  356 bits (914), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 265/824 (32%), Positives = 392/824 (47%), Gaps = 151/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            ++PS+++D +E++ + +  L             +K+      L V+ VPP+  R PS   
Sbjct: 181  MMPSEIRDRLERIPDKDLPLLGL--------HPEKSRPEWMILTVLPVPPVTMR-PSITL 231

Query: 302  DSVM--EHPQTVLLSKVLQANIYL-ANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAA 358
            +S +  E   T  L  +++ N  L +N     P    +I   W  LQ  V    + + + 
Sbjct: 232  ESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQ--LIIEDLWDLLQYHVTTYINNETSG 289

Query: 359  -------GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
                     R + + + Q L+ KEG FR  L GKRVN++ R+VISPDP +++NE+G+P  
Sbjct: 290  IPPAKHKSGRPLKT-LAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPLA 348

Query: 412  FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRI------S 465
             A+ LT PE+VT +N  KL+  ++NG E +PGA + +D       P  +++R+      +
Sbjct: 349  IAMELTVPEKVTEFNFEKLKQRVLNGPEKYPGANYVID-------PEGRRIRLMENNLET 401

Query: 466  IGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLK 525
            I  +LD                  G  V RHL+DGD+VL NRQP+LH+ SIMAH VRV+ 
Sbjct: 402  IAERLDI-----------------GWTVERHLEDGDIVLFNRQPSLHRMSIMAHRVRVMP 444

Query: 526  GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSL 585
              KT R++   C  YNADFDGDEMN+H PQ E ++AEA  ++   N  + P  G PL + 
Sbjct: 445  -YKTFRLNLPVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAG 503

Query: 586  IQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL 645
            IQDHI    LLT++  +  R E  Q+L  +GV                     + + LP 
Sbjct: 504  IQDHISGGYLLTREGAYFTRSEVEQMLTFAGV---------------------DVDELPK 542

Query: 646  LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKND 705
               +     LW+GK + + +                  LP D   T +  +K  D     
Sbjct: 543  PDKVENGVELWSGKTIFSLL------------------LPDDL--TLWYRNKLCDEP--- 579

Query: 706  KGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVID 765
                            ++ E +E K  EEK     +   K   +  + I    L+ G ID
Sbjct: 580  ----------------ERCEAIE-KLIEEKLVPDPEEVRKIAYDGFVYIQNGKLLSGAID 622

Query: 766  KAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDD-------LLI 816
            K  +   D  L+  +   YG   A   L  +++L    +   GFT  +DD       L  
Sbjct: 623  KKAYGREDGKLLDIIVREYGVERARQFLDQVTKLTIWVITHKGFTTAIDDEDLPQEALDR 682

Query: 817  LKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFD 876
            +K+  RE +  ++   E  KR  LE L  +   E    K+ + + +A    G  A  Y  
Sbjct: 683  IKEIIREAEERVNKLIEAYKRGELEPLPGKTLEETLESKIMAVLAEARDNAGKVAERYLG 742

Query: 877  MKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
            M      N H                        +M  +GA+G  +N  Q+++ LGQQ +
Sbjct: 743  M------NNHA----------------------VIMAKTGARGKILNITQMAAMLGQQSI 774

Query: 937  EGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVK 996
             GKR+ R   G+ L  F P D   RA GF+++ + +GL PQEY+FH M GREGLVDTAV+
Sbjct: 775  RGKRLYRGYRGRVLTHFKPGDLGARARGFVVNSYKSGLTPQEYFFHAMGGREGLVDTAVR 834

Query: 997  TSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            T++SGY+QR LI  L+ LK+ YD +VRD  G IVQF YGEDGVD
Sbjct: 835  TAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQFRYGEDGVD 878



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 37/64 (57%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG R   CPGHFGHI+L  PV +      +  +L+  C  C   K +  E+E+ ++K
Sbjct: 60  CETCGARAGECPGHFGHIELARPVVHVGFAKTIQRVLESTCRECGRIKLTDEEIEEYMKK 119

Query: 61  LELI 64
            E+I
Sbjct: 120 FEVI 123


>gi|218884685|ref|YP_002429067.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus kamchatkensis
            1221n]
 gi|218766301|gb|ACL11700.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus kamchatkensis
            1221n]
          Length = 886

 Score =  356 bits (913), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 279/831 (33%), Positives = 398/831 (47%), Gaps = 152/831 (18%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P  F +Q +     L PS+V+  +EK+  ++ +L          G           L V+
Sbjct: 166  PHTFYEQTERGLLKLTPSEVRGRLEKISNDDVKLLG--------GDPNDTRPEWMVLTVL 217

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
             VPP   R PS   ++ +  E   T  L  +++ N  L   +V     + +I   W  LQ
Sbjct: 218  PVPPRSVR-PSVLLETGIRSEDDLTHKLVDIIRTNNRL-REHVEGGAPSAIIEDEWELLQ 275

Query: 346  QSVNVLFD----GKNAAGQRDMAS--GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDP 399
              +   FD    G   A  R   +  GI Q L+ KEG FR  L GKRV+++ R+VISPDP
Sbjct: 276  YHITTYFDNEVPGLPVAKHRSGKTLKGIAQRLKGKEGRFRNNLRGKRVDFSARTVISPDP 335

Query: 400  YLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPN 459
             L++NE+G+P   A  LT PERVTPWN+ ++R  ++NG E  PGA + +         P+
Sbjct: 336  SLSINEVGVPEDVAKILTIPERVTPWNIEEMRKLVLNGPEKWPGANYIVR--------PD 387

Query: 460  KKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAH 519
                   GRK+       V     +++   G +V RHL DGD+VL NRQP+LH+ S+MAH
Sbjct: 388  -------GRKISLK---FVDRKAAAESLESGFIVERHLMDGDIVLFNRQPSLHRISVMAH 437

Query: 520  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNG 579
            VVRVL   KT R++   C  YNADFDGDEMN+H PQ E +RAEA  ++      + P  G
Sbjct: 438  VVRVLP-YKTFRLNLLVCPPYNADFDGDEMNLHVPQSEEARAEARLLMLVERHILTPRYG 496

Query: 580  DPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSE 639
             P+   +QD+I  A +LT K T L++D+   LL S+G        + G+           
Sbjct: 497  GPIIGGLQDYISGAYILTSKTTLLDKDDVVDLLSSTG--------YKGE----------- 537

Query: 640  QEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQS 699
               LP  PAI KP  LWTGKQ+++                    LP+DF           
Sbjct: 538  ---LP-EPAILKPRALWTGKQLVSLF------------------LPKDF----------- 564

Query: 700  DRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND- 758
            + K+N K                              A   +  +++   + L+I +N  
Sbjct: 565  NYKRNSK---------------------------IGSAAALRCIDEDCPHDSLVIIRNGV 597

Query: 759  LVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
            L+ GV+DKA         LVH + + YG +     +  + ++F    + +G T     L 
Sbjct: 598  LLEGVLDKASIGREEPESLVHWLIKEYGEDYGRMFMDRVYKMFIRMSEKYGLTMSYTHLT 657

Query: 816  ILKDKERERKNHLHGSEEI-GKRVHLEALELEDGAEIDPIKLKSEIEKAMRG-----GGD 869
            +      E +N L  SE I GK+  +E L                I K  RG      G 
Sbjct: 658  L----PEEARNRL--SEIIAGKKKEVEEL----------------ISKYKRGELLARPGK 695

Query: 870  AAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISS 929
                  + ++   L+K    SV  E+++      T  N + +M  +GA+G+ VN  Q+++
Sbjct: 696  TVEETLEDEIIDILSKKLLDSV-AEVITPYF---TLVNPVVIMARTGARGNPVNLTQMAA 751

Query: 930  HLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREG 989
             LGQQ + GKR+ R   G+ L  F P D  P A GFI   F+ GL P E +FH  AGREG
Sbjct: 752  LLGQQTVRGKRLTRGYLGRALSHFKPEDLGPEARGFIASGFVHGLNPVEMFFHAAAGREG 811

Query: 990  LVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            L+DTAV+TS+SGY+QR LI  L+ L++ YD SVR   G IVQ  YGEDGVD
Sbjct: 812  LIDTAVRTSQSGYMQRRLINALQDLRVEYDGSVRLTTGEIVQLLYGEDGVD 862



 Score = 45.8 bits (107), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 28/61 (45%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C  CG  +  CPGHFGHI+L  PV +      +   LK  C  C   K    E  + +R 
Sbjct: 62  CPICGNTRDSCPGHFGHIELAKPVIHAGFAKQILIYLKATCRNCGRLKIPEEEKGEYLRL 121

Query: 61  L 61
           L
Sbjct: 122 L 122


>gi|409095098|ref|ZP_11215122.1| DNA-directed RNA polymerase subunit A' [Thermococcus zilligii AN1]
          Length = 907

 Score =  356 bits (913), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 262/824 (31%), Positives = 392/824 (47%), Gaps = 151/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            ++P++++D +E++ + +  L     +  +  +          L V+ VPP+  R PS   
Sbjct: 181  MMPNEIRDRLERIPDGDLPLLGLHPENSRPEW--------MVLTVLPVPPVTMR-PSITL 231

Query: 302  DSVM--EHPQTVLLSKVLQANIYL-ANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAA 358
            +S +  E   T  L  +++ N  L +N     P    +I   W  LQ  V    + + + 
Sbjct: 232  ESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQ--LIIEDLWDLLQYHVTTYINNETSG 289

Query: 359  -------GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
                     R + + + Q L+ KEG FR  L GKRVN++ R+VISPDP +++NE+G+P  
Sbjct: 290  VPPAKHKSGRPLKT-LAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPIA 348

Query: 412  FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRI------S 465
             A+ LT PE+VT +N  KL++ ++NG E +PGA + +D       P  K++R+      +
Sbjct: 349  IAMELTVPEKVTEFNFEKLKERVLNGPEKYPGANYVID-------PEGKRIRLMESNLKT 401

Query: 466  IGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLK 525
            I  KLD                  G  V RHL+DGD+VL NRQP+LH+ SIMAH VRV+ 
Sbjct: 402  IAEKLDI-----------------GWTVERHLEDGDIVLFNRQPSLHRMSIMAHRVRVMP 444

Query: 526  GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSL 585
              +T R++ + C  YNADFDGDEMN+H PQ E ++AEA  ++   N  + P  G P+ + 
Sbjct: 445  -YRTFRLNLSVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPIIAG 503

Query: 586  IQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL 645
            IQDHI    LLT++  +  R E  Q++  +G+                     + + LP 
Sbjct: 504  IQDHISGGYLLTREGAYFTRLEVEQMIAFAGI---------------------DVDKLPE 542

Query: 646  LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKND 705
                   +PLW+GK V + +                  LP D   T +  +K  D     
Sbjct: 543  PDKFENGQPLWSGKTVFSLL------------------LPSDL--TIWYRNKLCDEP--- 579

Query: 706  KGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVID 765
                            ++ E +E K  EEK     +   K   +  + I    L+ G ID
Sbjct: 580  ----------------ERCEALE-KLIEEKLLPDPEEVRKLACDGFVYIQNGRLLSGAID 622

Query: 766  KAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDD-------LLI 816
            K  +   D  L+  +   YG   A   L  ++RL    +   GFT  +DD       L  
Sbjct: 623  KTVYGREDGKLLDVIVREYGVERARQFLDQVTRLTIWVITHRGFTTAIDDEDLPEEALDR 682

Query: 817  LKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFD 876
            +K+  RE +  +    E  KR  LE L  +   E    ++ + + +A    G  A  Y  
Sbjct: 683  IKEIAREAEEKVQKLIEAYKRGELEPLPGKSLEETLESRIMAVLAEARDNAGKVAERYLG 742

Query: 877  MKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
            M                             N   +M  +GA+G  +N  Q+++ LGQQ +
Sbjct: 743  M----------------------------GNHAVIMAKTGARGKILNITQMAAMLGQQSI 774

Query: 937  EGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVK 996
             GKR+ R   G+ L  F P D   RA GF+ + + +GL PQEY+FH M GREGLVDTAV+
Sbjct: 775  RGKRLYRGYRGRVLTHFKPGDLGARARGFVTNSYKSGLTPQEYFFHAMGGREGLVDTAVR 834

Query: 997  TSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            T++SGY+QR LI  L+ LK+ YD +VRD  G IVQF YGEDGVD
Sbjct: 835  TAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQFKYGEDGVD 878



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG +   CPGHFGHI+L  PV +      +  +L+  C  C   K +  E+E  ++K
Sbjct: 60  CETCGAKAGECPGHFGHIELARPVVHVGFAKTILRVLESTCRECGRIKLTDEEIEGYMKK 119

Query: 61  LELI 64
            E+I
Sbjct: 120 FEVI 123


>gi|389852852|ref|YP_006355086.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. ST04]
 gi|388250158|gb|AFK23011.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. ST04]
          Length = 907

 Score =  355 bits (912), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 267/828 (32%), Positives = 397/828 (47%), Gaps = 141/828 (17%)

Query: 233  KQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPI 292
            +Q + +   ++P++V+D +EK+ + +  L             +K+      L V+ VPP+
Sbjct: 172  EQGNEYKHRMMPTEVRDRLEKIPDEDLPLLGL--------HPEKSRPEWMVLTVLPVPPV 223

Query: 293  KFRLPSKGGDSVM--EHPQTVLLSKVLQANIYL-ANAYVNQPDNAKVIVARWMNLQQSVN 349
              R PS   ++ +  E   T  L  +++ N  L  N     P    +I   W  LQ  V 
Sbjct: 224  TVR-PSITLETGIRAEDDLTHKLVDIIRINNRLKQNIEAGAPQ--LIIEDLWDLLQYHVT 280

Query: 350  VLFDGKNAA-------GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLA 402
               + + +          R + + + Q L+ KEG FR  L GKRVN++ R+VISPDP ++
Sbjct: 281  TYINNETSGIPPAKHKSGRPLKT-LAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMIS 339

Query: 403  VNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM 462
            +NE+G+P   A+ LT PE+VT +N+ KLR  ++NG + +PGA + +D       P  K++
Sbjct: 340  INEVGVPIEIAMELTVPEKVTEFNIEKLRKMVLNGPDKYPGANYVID-------PDGKRI 392

Query: 463  RI-SIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVV 521
            RI    R+    R  I            G  V RHL DGD+VL NRQP+LH+ SIMAH V
Sbjct: 393  RIMESNREFLAERLDI------------GWTVERHLLDGDIVLFNRQPSLHRMSIMAHRV 440

Query: 522  RVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDP 581
            RV+   KT R++ A C  YNADFDGDEMN+H PQ E ++AEA  ++   N  + P  G P
Sbjct: 441  RVMP-YKTFRLNLAVCPPYNADFDGDEMNLHVPQTEEAQAEARILMEVQNHIISPRYGGP 499

Query: 582  LRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQE 641
            +   IQDHI    LLT++  +  R+E  Q+L  +GV                     + +
Sbjct: 500  IIGGIQDHISGGYLLTREGAYFTREEVEQMLMFAGV---------------------DIK 538

Query: 642  VLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDR 701
             LP        +PLW+GK + + +                  LP D   T +  +K  D 
Sbjct: 539  ELPEPDKYENGKPLWSGKTIFSLL------------------LPDDL--TVWYRNKLCDE 578

Query: 702  KKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVR 761
                                ++ E +E K  EEK     +   K   +  + I    L+ 
Sbjct: 579  P-------------------ERCEALE-KLIEEKLIPDPEEVRKLAYDGFVYIQNGKLLS 618

Query: 762  GVIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLI--- 816
            G IDK  +   D  ++  +   YG   A   L  +++L    +   GFT G+DD  +   
Sbjct: 619  GAIDKKAYGREDGIILDLIVREYGIERARQFLDQVTKLTIWVITHKGFTTGIDDEDLPEE 678

Query: 817  ----LKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
                +++  RE +  +    E  KR  LE L  +   E    K+ + + +A    G  A 
Sbjct: 679  ARDRIREVIREAEERVQRLIEAYKRGELEPLPGKSLEETLESKIMAVLAEARDNAGAIAE 738

Query: 873  AYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
             Y  M      + HT                       +M  +GA+G  +N  Q+++ LG
Sbjct: 739  KYLGM------DNHT----------------------VIMAKTGARGKILNITQMAALLG 770

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ + GKR+ R   G+ L  F P D   RA GF+++ + +GL PQEY+FH M GREGLVD
Sbjct: 771  QQSIRGKRLYRGFKGRVLSHFKPGDLGARARGFVVNSYKSGLSPQEYFFHAMGGREGLVD 830

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            TAV+T++SGY+QR LI  L+ LK+ YD +VRD  G IVQF YGEDGVD
Sbjct: 831  TAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGVIVQFRYGEDGVD 878



 Score = 60.5 bits (145), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG R   CPGHFGHI+L  PV +      ++ +L+  C  C   K +  E+E+ ++K
Sbjct: 60  CETCGARAGECPGHFGHIELARPVIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYMKK 119

Query: 61  LEL 63
           LEL
Sbjct: 120 LEL 122


>gi|223478217|ref|YP_002582841.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. AM4]
 gi|214033443|gb|EEB74270.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. AM4]
          Length = 905

 Score =  355 bits (911), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 268/832 (32%), Positives = 389/832 (46%), Gaps = 167/832 (20%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            ++PS+++D +E++ + +  L             +K+      L V+ VPP+  R PS   
Sbjct: 181  MMPSEIRDRLERIPDKDLPLLGL--------HPEKSRPEWMILTVLPVPPVTMR-PSITL 231

Query: 302  DSVM--EHPQTVLLSKVLQANIYL-ANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAA 358
            +S +  E   T  L  +++ N  L +N     P    +I   W  LQ  V    + + + 
Sbjct: 232  ESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQ--LIIEDLWDLLQYHVTTYINNETSG 289

Query: 359  -------GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
                     R + + + Q L+ KEG FR  L GKRVN++ R+VISPDP +++NE+G+P  
Sbjct: 290  VPPAKHKSGRPLKT-LAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPLA 348

Query: 412  FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRIS------ 465
             A+ LT PE+VT +N  KLR  ++NG E +PGA + +D       P  +++R+       
Sbjct: 349  IAMELTVPEKVTEFNFEKLRQRVLNGPEKYPGANYVID-------PEGRRIRLMENNLEI 401

Query: 466  IGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLK 525
            I  +LD                  G  V RHL+DGD+VL NRQP+LH+ SIMAH VRV+ 
Sbjct: 402  IAERLDI-----------------GWTVERHLEDGDIVLFNRQPSLHRMSIMAHRVRVMP 444

Query: 526  GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSL 585
              KT R++   C  YNADFDGDEMN+H PQ E ++AEA  ++   N  + P  G PL + 
Sbjct: 445  -YKTFRLNLPVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAG 503

Query: 586  IQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL 645
            IQDHI    LLT++  +  R E  Q+L  +GV    L                       
Sbjct: 504  IQDHISGGYLLTREGAYFTRSEVEQMLTFAGVDVDEL----------------------- 540

Query: 646  LPAIWKPEP--------LWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADK 697
                  PEP        LW+GK + + +                  LP D   T +  +K
Sbjct: 541  ------PEPDKVENGVELWSGKTIFSLL------------------LPDDL--TIWYRNK 574

Query: 698  QSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN 757
              D                     ++ E +E K  EEK     +   K   +  + I   
Sbjct: 575  LCDEP-------------------ERCEALE-KLIEEKLVPDPEEVRKLAYDGFVYIQNG 614

Query: 758  DLVRGVIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDD-- 813
             L+ G IDK  +   D  L+  +   YG   A   L  +++L    +   GFT  +DD  
Sbjct: 615  KLLSGAIDKKAYGREDGKLLDLIVREYGVERARQFLDQVTKLTIWVITHKGFTTAIDDED 674

Query: 814  -----LLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGG 868
                 L  +K+  RE +  +    E  KR  LE L  +   E    K+ + + +A    G
Sbjct: 675  LPQEALDRIKEIIREAEERVQRLIEAYKRGELEPLPGKTLEETLESKIMAVLAEARDNAG 734

Query: 869  DAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQIS 928
              A  Y  M      N H                        +M  +GA+G  +N  Q++
Sbjct: 735  KVAERYLGM------NNHA----------------------VIMAKTGARGKILNITQMA 766

Query: 929  SHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGRE 988
            + LGQQ + GKR+ R   G+ L  F P D   RA GF+++ + +GL PQEY+FH M GRE
Sbjct: 767  AMLGQQSIRGKRLYRGYRGRVLTHFKPGDLGARARGFVVNSYKSGLTPQEYFFHAMGGRE 826

Query: 989  GLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            GLVDTAV+T++SGY+QR LI  L+ LK+ YD +VRD  G IVQF YGEDGVD
Sbjct: 827  GLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQFRYGEDGVD 878



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 37/64 (57%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG R   CPGHFGHI+L  PV +      +  +L+  C  C   K +  E+E+ ++K
Sbjct: 60  CETCGARAGECPGHFGHIELARPVVHVGFAKTIQRVLESTCRECGRIKLTDEEIEEYMKK 119

Query: 61  LELI 64
            E+I
Sbjct: 120 FEVI 123


>gi|403214358|emb|CCK68859.1| hypothetical protein KNAG_0B04240 [Kazachstania naganishii CBS 8797]
          Length = 1455

 Score =  355 bits (910), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 289/958 (30%), Positives = 446/958 (46%), Gaps = 204/958 (21%)

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVN--VLFDGKNAAGQRDMASGICQLLEKKEGLFRQKL 382
            N  +   D  ++ VA ++N   SVN  +L    +  G+     G CQ L+ K+G FR  L
Sbjct: 310  NNMMEHWDYLQLTVAMYIN-SDSVNPAMLPGASSGGGKVKPIRGFCQRLKGKQGRFRGNL 368

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
             GKRV+++ R+VISPDP L+++E+ +P   A  LT+PE+VT +N  KL+  IING  +HP
Sbjct: 369  SGKRVDFSGRTVISPDPNLSIDEVAVPQLVAKVLTFPEKVTRYNKRKLQQLIINGPTVHP 428

Query: 443  GATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDV 502
            GA + L K    R    + +R   G KL  ++           N   G +V RHL+DGDV
Sbjct: 429  GANYLLKKNEEAR----RNLR--YGDKLKLAK-----------NLQYGDVVERHLEDGDV 471

Query: 503  VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
            VL NRQP+LH+ SI++H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAE
Sbjct: 472  VLFNRQPSLHRLSILSHYAKI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAE 530

Query: 563  AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL 622
            A N++   N  + P +G+P+ +  QD I  + L++ KD+F +     QLL  S +S + L
Sbjct: 531  AINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDLGSLTQLL--SMMSDAKL 588

Query: 623  GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGG 682
              F   P                 PAI KP  LWTGKQV + ++      + P V+    
Sbjct: 589  -QFDIPP-----------------PAIMKPYYLWTGKQVFSLLIR--PNKKSPVVI---- 624

Query: 683  KLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMH---KDKSGKKKEVVEGKPGEEKEAEK 739
                                      L   NK++   KDKS                   
Sbjct: 625  -------------------------NLDAKNKVYIPPKDKSF------------------ 641

Query: 740  NKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSR 796
                E  +++  ++I  ++++ GV+DK+   D   + + +T+   YG   A   ++ +++
Sbjct: 642  --PNEMSINDGFVIIRGSEILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANTMNRMAK 699

Query: 797  LFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED-----GAEI 851
            L   +L   GF+ G+ D+    D  R++K      EE+ +  + +  EL D       E 
Sbjct: 700  LCARYLGNRGFSIGISDVTPSSDL-RDKK------EEMVRFAYAKCDELIDMFKNGKLET 752

Query: 852  DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
             P   + +  +A  GG           + S++ +      INEL  + L  P       +
Sbjct: 753  QPGCNEEQTLEAKIGG-----------LLSKVREEVGDVCINEL--DNLNAPL------I 793

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            M T G+KGS +N  Q+ + +GQQ + G RVP     ++LP F      P++ GF+ + F 
Sbjct: 794  MATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFQKNSKTPQSKGFVRNSFF 853

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            +GL P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR +   IVQ
Sbjct: 854  SGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDDTVRTSANGIVQ 913

Query: 1032 FCYGEDGVD-------VHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMI 1084
            F YG DG+D           +FI  +D        +        + G   + + R  + +
Sbjct: 914  FTYGGDGLDPLDMEGNAKPVNFIRSWDHACNITFNKN-------ETGLLPYEIVRETDNV 966

Query: 1085 YKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGE 1144
             K    +L   +     +P  L D+ E++AD+    E A    L++   +    LAQ   
Sbjct: 967  LKPLEEKLIRYDNLGAVVPKELIDD-ERYADRH-DAERAFYKSLRMYMQEKAARLAQIRN 1024

Query: 1145 PVGLL-ASQSVGEPS------------------TQMTLNTF------------------- 1166
              GLL  +Q+ G+ S                  T+  +N F                   
Sbjct: 1025 TRGLLEMTQNGGDTSMEVVSSELQASVDQVYKITKKNVNAFLTIALHKYHRAKVEPGTAV 1084

Query: 1167 --------------------HLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
                                H AG   MNVTLG+PR++EI+  ASK I TP+I   L+
Sbjct: 1085 GAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-ASKVISTPIINAVLV 1141


>gi|156096092|ref|XP_001614080.1| DNA-directed RNA polymerase III largest subunit [Plasmodium vivax
            Sal-1]
 gi|148802954|gb|EDL44353.1| DNA-directed RNA polymerase III largest subunit, putative [Plasmodium
            vivax]
          Length = 1946

 Score =  355 bits (910), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 259/825 (31%), Positives = 401/825 (48%), Gaps = 158/825 (19%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDS--VMEHPQTVLLSKVLQ---------ANIYLANAYVNQ 330
              +  +LVPP   R PS   D     E   T +LS++ Q         +N Y  N ++  
Sbjct: 268  LLITALLVPPNTIR-PSVVIDEHGTAEDDLTCILSEITQLNNTINNQCSNGYQTNQFLGN 326

Query: 331  PDNAKVIVARWMNLQQ-SVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNY 389
             +  ++ + R++N    +V+ L   +N +       GICQ L+ KEG FR  L GKRV++
Sbjct: 327  VEFLQLQITRFINSDSPAVSQLLATQNISKP---GRGICQRLKGKEGRFRCNLSGKRVDF 383

Query: 390  ACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLD 449
            + R+VISPDP ++++E+ +P   A+RLTYPE+V  +N+ KL+  I NG    PGA + + 
Sbjct: 384  SSRTVISPDPNISIDEVVVPESIAMRLTYPEKVNRYNMAKLKRLIRNGTSTWPGANYVIK 443

Query: 450  KLSTM-RLPPNKKMRISIGRKLDTSRGAIVQPGKDS------------------------ 484
            K        P     I + ++       ++ P   S                        
Sbjct: 444  KACGQGGASPRGDSLIDVVKRYVGHPSGVLLPTAASVGDPRRGNPAINKISLKYANKRLV 503

Query: 485  -DNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNAD 543
             +N   G +V RHL DGD+VL NRQP+LH+ SIM H  RV+K  KT R +   CS YNAD
Sbjct: 504  VENLQVGDVVERHLVDGDIVLFNRQPSLHRMSIMCHKARVMK-YKTFRFNECVCSPYNAD 562

Query: 544  FDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFL 603
            FDGDEMN+H PQ E +RAEA  ++N  N  + P NG+ + +L QD + ++ ++T KDTFL
Sbjct: 563  FDGDEMNLHVPQTEEARAEALYLMNVKNNLITPKNGEVIIALTQDFLSASYVITNKDTFL 622

Query: 604  NRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVIT 663
            +RD FC  L  S  S +           +V I       LP +PAI KP+ LWTGKQ+I+
Sbjct: 623  DRDSFC--LLCSYFSDA-----------KVNID------LP-VPAILKPKELWTGKQLIS 662

Query: 664  AVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKK 723
             ++                               + + K+N         + +  K+G  
Sbjct: 663  VLI-------------------------------KPNTKENTIINFEIKEREYSTKNGDL 691

Query: 724  KEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQEL 781
            K +                    L++  +  YK++L+ G + K     + YGL + +   
Sbjct: 692  KHMC-------------------LNDSYVCFYKSELICGSLGKKVLGSSKYGLFYYLIHH 732

Query: 782  YGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLH-GSEEIGKRVHL 840
              S  A  +++  S+L + +    G T G+DD+       +++K+ L  G E++ + + L
Sbjct: 733  NSSYVALKIMNRFSKLTSRYFSNKGMTIGIDDVTPSDTLLQKKKDLLQAGYEKVNREIAL 792

Query: 841  ---EALELEDGAEID---PIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINE 894
               + ++++ G  ++    IK+K+ ++      G     Y D      LNK         
Sbjct: 793  YNEKKMQIQPGCTLEETLEIKVKNILDDLRNDAGKTCNQYLD-----HLNKPL------- 840

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLP--S 952
                            +M  SGAKG+ +N  Q+ + +GQQ + G+R+      +TLP  +
Sbjct: 841  ----------------IMFNSGAKGALINIAQMIACVGQQNVTGQRIQNGFINRTLPHFN 884

Query: 953  FHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 1012
            FH  D   R  GF+ + F TGL P E++FH M+GREGLVDTAVKT+ +GY+QR L+K LE
Sbjct: 885  FHCKDSESR--GFVQNSFYTGLNPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALE 942

Query: 1013 CLKISYDYSVRDADGSIVQFCYGEDGVDV----HQTSFISKFDAL 1053
             L I YD+SVR  D  IVQF YG+D ++     +  S+  +FD +
Sbjct: 943  DLSIHYDFSVRSCDKQIVQFIYGDDALNPSFVDNNNSYAHQFDKI 987



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 53/72 (73%), Gaps = 1/72 (1%)

Query: 1134 KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKD 1193
            K+   ++ PG+ VG +++QS+GEP TQMTL TFH AG   MNVTLG+PR++EI+  AS  
Sbjct: 1442 KYFKYISAPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-ASST 1500

Query: 1194 IKTPVITCPLLV 1205
            I+TP++  PL V
Sbjct: 1501 IQTPILNIPLQV 1512


>gi|303272485|ref|XP_003055604.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463578|gb|EEH60856.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1694

 Score =  354 bits (909), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 257/813 (31%), Positives = 388/813 (47%), Gaps = 152/813 (18%)

Query: 251  IEKLWENEFELCSFISDMQQQGFGKKAGH---SIFFLGVVLVPPIKFRLPSKGGDSVM-- 305
            I+   E   ++   ISD      G    H   S + L V+ VPP   R PS   D+    
Sbjct: 191  IQVTAEMALKILKNISDEDCIALGLSPEHAHPSWYILQVLPVPPHPVR-PSVAFDASTRS 249

Query: 306  EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQ-RDMA 364
            E   TV L ++++ N  L    +N     + ++  +  L Q   + F     AGQ R + 
Sbjct: 250  EDDLTVKLMEIVRMNKNLQKQEMN--GAPQHVIGEFTELLQYHIMTFMDNTVAGQPRSLT 307

Query: 365  ------SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTY 418
                    I + L+ K G  R  LMGKRV+++ R+VI+PDP L ++E+G+P   AL +TY
Sbjct: 308  RSGRPIKSISERLKGKNGRIRGNLMGKRVDFSARTVITPDPNLMLDELGVPWSIALNMTY 367

Query: 419  PERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIV 478
            PE VTP+N+ +LR  + NG    PG T              K +    G++LD     + 
Sbjct: 368  PEMVTPYNIERLRKLVENGPHPPPGETG------------AKYIIREDGQRLD-----LR 410

Query: 479  QPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 537
               K+SD   E G  V RH+ +GD VL NRQP+LHK SIM H VR++    T RM+ +  
Sbjct: 411  FLKKESDKRLEYGYRVERHMINGDCVLFNRQPSLHKMSIMGHRVRIMP-YSTFRMNISVT 469

Query: 538  STYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
              YNADFDGDEMN+H PQ   +RAE   ++      V P    P+ +++QD ++++ L+T
Sbjct: 470  PPYNADFDGDEMNMHLPQSLETRAEVQELMMVPKMIVSPQANKPVMAIVQDTLLASRLMT 529

Query: 598  KKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWT 657
            K+DTF+ +D F  +L         L ++ GK  +               PAI KPEPLWT
Sbjct: 530  KRDTFIKKDVFMNILM-------WLENWDGKVPK---------------PAILKPEPLWT 567

Query: 658  GKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHK 717
            GKQV T  L  ++                                      L+K +   K
Sbjct: 568  GKQVFTMFLPDVS--------------------------------------LTKQSAWAK 589

Query: 718  DKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLV 775
            D                     N   +  + +  + I K +L+ G++ K        GL+
Sbjct: 590  D---------------------NDPHDFSVEDTGVRIEKGELITGILCKKTLGSGGGGLI 628

Query: 776  HTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLI-------LKDKERERKNHL 828
            H + E +G   A   +S +  L   +L  HGFT G+ D +        + D   + K  +
Sbjct: 629  HVIWEEWGPTAARGFVSQVQWLLNYWLLQHGFTIGISDTIADDGTMNSINDTITKAKQDV 688

Query: 829  HGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTS 888
               +E+       ALEL+ G  +                       F+ K+   LNK   
Sbjct: 689  ---KEVIALAQTNALELQPGMTMQ--------------------QSFEQKVNQILNKARD 725

Query: 889  SSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGK 948
            ++  +   ++G L  T  N + +  T+G+KGS +N  Q+ + +GQQ +EGKR+P    G+
Sbjct: 726  NAGNS---AQGSLDDT--NNVKMTVTAGSKGSFLNISQMIACVGQQNVEGKRIPFGFDGR 780

Query: 949  TLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1008
            +LP F   D+ P + GF+ + +L GL PQE++FH M GREGL+DTAVKTS +GY+QR L+
Sbjct: 781  SLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 840

Query: 1009 KNLECLKISYDYSVRDADGSIVQFCYGEDGVDV 1041
            K +E + + YD +VR++ G ++QF YGEDG+D 
Sbjct: 841  KAMEDIIVKYDGTVRNSAGDVIQFLYGEDGMDA 873



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 57/73 (78%), Gaps = 1/73 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            V+ +F ++LA PG+ +G +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ IA
Sbjct: 1053 VESRFKMALAPPGDGIGTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIA 1112

Query: 1191 SKDIKTPVITCPL 1203
             K IKTP +T  L
Sbjct: 1113 KK-IKTPSLTVAL 1124


>gi|341581877|ref|YP_004762369.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. 4557]
 gi|340809535|gb|AEK72692.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. 4557]
          Length = 905

 Score =  354 bits (908), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 266/827 (32%), Positives = 400/827 (48%), Gaps = 157/827 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            ++PS+V+D +EK+ + +  L             +KA      L V+ VPP+  R PS   
Sbjct: 181  MMPSEVRDRLEKIPDKDLPLLGL--------HPEKARPEWMILTVLPVPPVTMR-PSITL 231

Query: 302  DSVM--EHPQTVLLSKVLQANIYL-ANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAA 358
            +S +  E   T  L  +++ N  L +N     P    +I   W  LQ  V    + + + 
Sbjct: 232  ESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQ--LIIEDLWDLLQYHVTTYINNETSG 289

Query: 359  -------GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
                     R + + + Q L+ KEG FR  L GKRVN++ R+VISPDP +++NE+G+P  
Sbjct: 290  IPPAKHKSGRPLKT-LSQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPMA 348

Query: 412  FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRIS------ 465
             A+ LT PE+VT +N  KL+  ++NG E +PGA + +D       P  +++R+       
Sbjct: 349  VAMELTVPEKVTEFNFEKLKKMVLNGPEKYPGANYVID-------PEGRRIRLMENNLEI 401

Query: 466  IGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLK 525
            I  KLD                  G  V RHL DGD+VL NRQP+LH+ SIMAH VRV+ 
Sbjct: 402  IAEKLDL-----------------GWTVERHLMDGDIVLFNRQPSLHRMSIMAHRVRVMP 444

Query: 526  GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSL 585
              +T R++ + C  YNADFDGDEMN+H PQ E ++AEA  ++   N  + P  G PL + 
Sbjct: 445  -YRTFRLNLSVCPPYNADFDGDEMNLHVPQTEEAQAEARILMEVQNHIISPRYGGPLIAG 503

Query: 586  IQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL 645
            IQDHI    LLT++  +  R E  Q+L  +G+    L                       
Sbjct: 504  IQDHISGGYLLTREGAYFTRSEVEQMLMFAGIDIREL----------------------- 540

Query: 646  LPAIWKPEP--------LWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADK 697
                  PEP        LW+GK + + V                  LP+D   T +  +K
Sbjct: 541  ------PEPDKVEDGVELWSGKTIFSLV------------------LPEDL--TIWYRNK 574

Query: 698  QSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN 757
              D  +    +     K+ ++K       +   PGE           ++L+ +  +  +N
Sbjct: 575  LCDEPE----RCEALEKLIEEK-------LVPDPGE----------VRKLAYDGFVYIQN 613

Query: 758  -DLVRGVIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
              L+ G IDK  +   D  L+  +   YG + A   L  +++L    +   GFT  +DD 
Sbjct: 614  GKLLSGAIDKKAYGREDGKLLDLIVREYGVDRARQFLDQVTKLAIWTITHKGFTTAIDD- 672

Query: 815  LILKDKERERKNHLHG-SEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVA 873
               +D   E  + +H    E  +RV+   +E     E++P+  K+ +E+ +     A +A
Sbjct: 673  ---EDLPSEALDRIHEIIREAEERVN-RLIEAYKNGELEPLPGKT-LEETLESNIMAVLA 727

Query: 874  YFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQ 933
                       +  +  V    L  G       N   +M  +GA+G  +N  Q+++ LGQ
Sbjct: 728  E---------ARDNAGKVAERYLGMG-------NHAVIMAKTGARGKMLNITQMAAMLGQ 771

Query: 934  QELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDT 993
            Q + GKR+ R   G+ L  F P D   RA GF+ + + +GL PQEY+FH M GREGLVDT
Sbjct: 772  QSIRGKRLYRGYRGRVLTHFKPGDLGARAKGFVTNSYKSGLTPQEYFFHAMGGREGLVDT 831

Query: 994  AVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            AV+T++SGY+QR LI  L+ LK+ YD +VRD  G IVQF YGEDG+D
Sbjct: 832  AVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQFKYGEDGID 878



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG R   CPGHFGH++L  P+ +      ++ +L+  C  C   K +  E+E+ + K
Sbjct: 60  CETCGARAGDCPGHFGHVELARPIVHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYMHK 119

Query: 61  LELIIKGDIIAAK 73
            E++  GD   AK
Sbjct: 120 FEVM--GDRKKAK 130


>gi|401016|sp|P31813.1|RPOA1_THECE RecName: Full=DNA-directed RNA polymerase subunit A'
 gi|48141|emb|CAA47723.1| Subunit A' of DNA-dependent RNA polymerase [Thermococcus celer]
          Length = 905

 Score =  354 bits (908), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 265/826 (32%), Positives = 396/826 (47%), Gaps = 155/826 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            ++PS+V+D +EK+ + +  L    ++        KA      L V+ VPP+  R PS   
Sbjct: 181  MMPSEVRDRLEKIPDRDLPLIGLDAE--------KARPEWMVLTVLPVPPVTMR-PSITL 231

Query: 302  DSVM--EHPQTVLLSKVLQANIYL-ANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAA 358
            +S +  E   T  L  +++ N  L +N     P    +I   W  LQ  V    + + + 
Sbjct: 232  ESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQ--LIIEDLWDLLQYHVTTYINNETSG 289

Query: 359  -------GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
                     R + + + Q L+ KEG FR  L GKRVN++ R+VISPDP +++NE+G+P  
Sbjct: 290  IPPAKHKSGRPLKT-LSQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPMA 348

Query: 412  FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRI------S 465
             A+ LT PE+VT +N  KLR  ++NG E +PGA + +D       P  +++R+      +
Sbjct: 349  IAMELTVPEKVTEFNFEKLRKMVLNGPEKYPGANYVID-------PEGRRIRLMENNLET 401

Query: 466  IGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLK 525
            +  KLD                  G  V RHL DGDVVL NRQP+LH+ SIMAH VRV+ 
Sbjct: 402  VAEKLDI-----------------GWTVERHLLDGDVVLFNRQPSLHRMSIMAHRVRVMP 444

Query: 526  GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSL 585
              +T R++ + C  YNADFDGDEMN+H PQ E ++AEA  ++   N  + P  G PL + 
Sbjct: 445  -YRTFRLNLSVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAG 503

Query: 586  IQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL 645
            IQDHI    LLT++  +  R E  Q+L  +GV    L                       
Sbjct: 504  IQDHISGGYLLTREGAYFERTEVEQMLMFAGVDVDRL----------------------- 540

Query: 646  LPAIWKPEP--------LWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADK 697
                  PEP        LW+GK + + +                  LP+D   T +  +K
Sbjct: 541  ------PEPDKVENGVELWSGKTIFSLL------------------LPKDL--TIWYRNK 574

Query: 698  QSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL-LIYK 756
              D    + G+     K+ ++K    +E V                 + L+ +    I  
Sbjct: 575  LCD----EPGRCEALEKLIEEKLIPDEEEV-----------------RALAYDGFTYILN 613

Query: 757  NDLVRGVIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
              L+ G IDK  +   D  L+  +   YG   A   L  +++L    +   GFT  +DD 
Sbjct: 614  GKLLSGAIDKTAYGREDGKLLDIIVREYGVERARQFLDQVTKLAIWVITHKGFTTAIDDE 673

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
             +  +     +  +  +EE   R+    +E     E++PI  K+ +E+ +     AA+A 
Sbjct: 674  DLPTEALDRIREIIREAEERVNRL----IEAYRNGELEPIPGKT-LEETLESKIMAALAE 728

Query: 875  FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
                      +  +  V    L          N   +M  +GA+G  +N  Q+++ LGQQ
Sbjct: 729  ---------ARDNAGKVAERYLGMS-------NHAVIMAKTGARGKILNITQMAAMLGQQ 772

Query: 935  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
             + GKR+ R    + L  F P D   RA GF+I+ + +GL PQEY+FH M GREGLVDTA
Sbjct: 773  SIRGKRLYRGYRERVLTHFKPGDLGARARGFVINSYKSGLTPQEYFFHAMGGREGLVDTA 832

Query: 995  VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            V+T++SGY+QR LI  L+ LK+ YD +VRD  G IVQF YGEDG+D
Sbjct: 833  VRTAQSGYMQRRLINALQDLKVEYDGTVRDPTGIIVQFRYGEDGID 878



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG R   CPGHFGH++L  PV +      ++ +L+  C  C   K +  E+E+   K
Sbjct: 60  CETCGARAGECPGHFGHVELARPVIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYFHK 119

Query: 61  LEL 63
            E+
Sbjct: 120 FEV 122


>gi|18977935|ref|NP_579292.1| DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus DSM 3638]
 gi|18893705|gb|AAL81687.1| DNA-directed RNA polymerase subunit a' [Pyrococcus furiosus DSM 3638]
          Length = 907

 Score =  353 bits (907), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 273/863 (31%), Positives = 418/863 (48%), Gaps = 156/863 (18%)

Query: 233  KQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPI 292
            +Q + +   L+P++V+D +EK+ + +  L     +        K+      L V+ VPP+
Sbjct: 169  EQGNEYRHRLMPTEVRDWLEKIPDKDLPLLGLDPE--------KSRPEWMVLTVLPVPPV 220

Query: 293  KFRLPSKGGDSVM--EHPQTVLLSKVLQANIYL-ANAYVNQPDNAKVIVARWMNLQQSVN 349
              R PS   ++ +  E   T  L  +++ N  L  N     P    +I   W  LQ  V 
Sbjct: 221  TAR-PSITLETGIRAEDDLTHKLVDIIRINNRLKQNIEAGAPQ--LIIEDLWDLLQYHVT 277

Query: 350  VLFD--------GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYL 401
               +         K+ +G R + + + Q L+ KEG FR  L GKRVN++ R+VISPDP +
Sbjct: 278  TYINNEAPGVPPAKHKSG-RPLKT-LAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMI 335

Query: 402  AVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKK 461
            ++NE+G+P   A+ LT PE+VT +N+ +LR  ++NG + +PGA + +D       P  ++
Sbjct: 336  SINEVGVPVEVAMELTVPEKVTEFNIERLRKMVLNGPDKYPGANYVID-------PEGRR 388

Query: 462  MRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHV 520
             RI     +D+++  +        N+ + G  V RHL DGD+VL NRQP+LH+ SIMAH 
Sbjct: 389  RRI-----MDSNKETLA-------NQLDIGWTVERHLMDGDIVLFNRQPSLHRMSIMAHR 436

Query: 521  VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGD 580
            VRV+   +T R++ A C  YNADFDGDEMN+H PQ E ++AEA  ++   N  + P  G 
Sbjct: 437  VRVMP-YRTFRLNLAVCPPYNADFDGDEMNLHVPQTEEAQAEARILMEVQNHIISPRYGG 495

Query: 581  PLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQ 640
            P+   IQDHI    LLT++  +  RDE  Q+L  +GV  + L                  
Sbjct: 496  PIIGGIQDHISGGYLLTREGAYFTRDEVEQMLMFAGVDITELPE---------------- 539

Query: 641  EVLPLLPAIWKP--EPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
                  P  +     PLW+GK + + +                  LP+D   T +  +K 
Sbjct: 540  ------PDKYDENGNPLWSGKTIFSLL------------------LPEDL--TVWYRNKL 573

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN- 757
             D  +    +     K+ ++K     E V                 ++L+ +  +  +N 
Sbjct: 574  CDEPE----RCEALEKLIEEKLMPDPEEV-----------------RKLAYDGFVYIQNG 612

Query: 758  DLVRGVIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
             L+ G IDK  +   D  ++  +   YG   A   L  +++L    +   GFT G+DD  
Sbjct: 613  KLLSGAIDKKAYGREDGIILDLIVREYGVERARQFLDQVTKLTIWVITHKGFTTGIDDED 672

Query: 816  I-------LKDKERERKNHLHGSEEIGKRVHLEAL---ELEDGAEIDPIKLKSEIEKAMR 865
            +       +++  RE +  ++   E  KR  LE L    LED  E   + + +E   A  
Sbjct: 673  LPEEARDRIREIIREAEERVNKLIEAYKRGELEPLPGKSLEDTLESLIMAVLAE---ARD 729

Query: 866  GGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQ 925
              G  A  Y  M      + HT                       +M  +GA+G  +N  
Sbjct: 730  NAGAVAEKYLGM------DNHT----------------------VIMAKTGARGKILNIT 761

Query: 926  QISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMA 985
            Q+++ LGQQ + GKR+ R   G+ L  F P D   RA GF+++ + +GL PQEY+FH M 
Sbjct: 762  QMAALLGQQSIRGKRLYRGFRGRVLSHFKPGDLGARAKGFVVNSYKSGLTPQEYFFHAMG 821

Query: 986  GREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT- 1044
            GREGLVDTAV+T++SGY+QR LI  L+ LK+ YD +VR  +G IVQF YGEDGVD  ++ 
Sbjct: 822  GREGLVDTAVRTAQSGYMQRRLINALQDLKVEYDGTVRSPEGIIVQFKYGEDGVDPMKSW 881

Query: 1045 -SFISKFDALAARERGRGRGRNK 1066
                   D +  R   + RG NK
Sbjct: 882  RGKTVDVDRIIVRTLLKMRGNNK 904



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG R   CPGHFGHI+L  PV +      +Y +L+  C  C   K +  E+E+ ++K
Sbjct: 57  CETCGGRAGECPGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIKLTDEEIEEYMKK 116

Query: 61  LEL 63
           +EL
Sbjct: 117 IEL 119


>gi|397652056|ref|YP_006492637.1| DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus COM1]
 gi|393189647|gb|AFN04345.1| DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus COM1]
          Length = 910

 Score =  353 bits (906), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 273/863 (31%), Positives = 418/863 (48%), Gaps = 156/863 (18%)

Query: 233  KQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPI 292
            +Q + +   L+P++V+D +EK+ + +  L     +        K+      L V+ VPP+
Sbjct: 172  EQGNEYRHRLMPTEVRDWLEKIPDKDLPLLGLDPE--------KSRPEWMVLTVLPVPPV 223

Query: 293  KFRLPSKGGDSVM--EHPQTVLLSKVLQANIYL-ANAYVNQPDNAKVIVARWMNLQQSVN 349
              R PS   ++ +  E   T  L  +++ N  L  N     P    +I   W  LQ  V 
Sbjct: 224  TAR-PSITLETGIRAEDDLTHKLVDIIRINNRLKQNIEAGAPQ--LIIEDLWDLLQYHVT 280

Query: 350  VLFD--------GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYL 401
               +         K+ +G R + + + Q L+ KEG FR  L GKRVN++ R+VISPDP +
Sbjct: 281  TYINNEAPGVPPAKHKSG-RPLKT-LAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMI 338

Query: 402  AVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKK 461
            ++NE+G+P   A+ LT PE+VT +N+ +LR  ++NG + +PGA + +D       P  ++
Sbjct: 339  SINEVGVPVEVAMELTVPEKVTEFNIERLRKMVLNGPDKYPGANYVID-------PEGRR 391

Query: 462  MRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHV 520
             RI     +D+++  +        N+ + G  V RHL DGD+VL NRQP+LH+ SIMAH 
Sbjct: 392  RRI-----MDSNKETLA-------NQLDIGWTVERHLMDGDIVLFNRQPSLHRMSIMAHR 439

Query: 521  VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGD 580
            VRV+   +T R++ A C  YNADFDGDEMN+H PQ E ++AEA  ++   N  + P  G 
Sbjct: 440  VRVMP-YRTFRLNLAVCPPYNADFDGDEMNLHVPQTEEAQAEARILMEVQNHIISPRYGG 498

Query: 581  PLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQ 640
            P+   IQDHI    LLT++  +  RDE  Q+L  +GV  + L                  
Sbjct: 499  PIIGGIQDHISGGYLLTREGAYFTRDEVEQMLMFAGVDITELPE---------------- 542

Query: 641  EVLPLLPAIWKP--EPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
                  P  +     PLW+GK + + +                  LP+D   T +  +K 
Sbjct: 543  ------PDKYDENGNPLWSGKTIFSLL------------------LPEDL--TVWYRNKL 576

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN- 757
             D  +    +     K+ ++K     E V                 ++L+ +  +  +N 
Sbjct: 577  CDEPE----RCEALEKLIEEKLMPDPEEV-----------------RKLAYDGFVYIQNG 615

Query: 758  DLVRGVIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
             L+ G IDK  +   D  ++  +   YG   A   L  +++L    +   GFT G+DD  
Sbjct: 616  KLLSGAIDKKAYGREDGIILDLIVREYGVERARQFLDQVTKLTIWVITHKGFTTGIDDED 675

Query: 816  I-------LKDKERERKNHLHGSEEIGKRVHLEAL---ELEDGAEIDPIKLKSEIEKAMR 865
            +       +++  RE +  ++   E  KR  LE L    LED  E   + + +E   A  
Sbjct: 676  LPEEARDRIREIIREAEERVNKLIEAYKRGELEPLPGKSLEDTLESLIMAVLAE---ARD 732

Query: 866  GGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQ 925
              G  A  Y  M      + HT                       +M  +GA+G  +N  
Sbjct: 733  NAGAVAEKYLGM------DNHT----------------------VIMAKTGARGKILNIT 764

Query: 926  QISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMA 985
            Q+++ LGQQ + GKR+ R   G+ L  F P D   RA GF+++ + +GL PQEY+FH M 
Sbjct: 765  QMAALLGQQSIRGKRLYRGFRGRVLSHFKPGDLGARAKGFVVNSYKSGLTPQEYFFHAMG 824

Query: 986  GREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT- 1044
            GREGLVDTAV+T++SGY+QR LI  L+ LK+ YD +VR  +G IVQF YGEDGVD  ++ 
Sbjct: 825  GREGLVDTAVRTAQSGYMQRRLINALQDLKVEYDGTVRSPEGIIVQFKYGEDGVDPMKSW 884

Query: 1045 -SFISKFDALAARERGRGRGRNK 1066
                   D +  R   + RG NK
Sbjct: 885  RGKTVDVDRIIVRTLLKMRGNNK 907



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG R   CPGHFGHI+L  PV +      +Y +L+  C  C   K +  E+E+ ++K
Sbjct: 60  CETCGGRAGECPGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIKLTDEEIEEYMKK 119

Query: 61  LEL 63
           +EL
Sbjct: 120 IEL 122


>gi|332157774|ref|YP_004423053.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. NA2]
 gi|331033237|gb|AEC51049.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. NA2]
          Length = 906

 Score =  353 bits (906), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 262/828 (31%), Positives = 401/828 (48%), Gaps = 140/828 (16%)

Query: 233  KQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPI 292
            +Q + +   ++P++++D +EK+ + +  L             +K+      L V+ VPP+
Sbjct: 172  EQGNEYKHRMMPTEIRDRLEKIPDKDLPLLGL--------HPEKSRPEWMVLTVLPVPPV 223

Query: 293  KFRLPSKGGDSVM--EHPQTVLLSKVLQANIYL-ANAYVNQPDNAKVIVARWMNLQQSVN 349
              R PS   ++ +  E   T  L  +++ N  L  N     P    +I   W  LQ  V 
Sbjct: 224  TAR-PSITLETGIRAEDDLTHKLVDIIRINNRLKQNIEAGAPQ--LIIEDLWDLLQYHVT 280

Query: 350  VLFDGKNAA-------GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLA 402
               + + +          R + + + Q L+ KEG FR  L GKRVN++ R+VISPDP ++
Sbjct: 281  TYINNETSGVPPAKHKSGRPLKT-LAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMIS 339

Query: 403  VNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM 462
            +NE+G+P   A+ LT PE+VT +N+ KLR  I+NG + +PGA + +D       P  +++
Sbjct: 340  INEVGVPIEIAMELTVPEKVTEFNIEKLRKMILNGPDKYPGANYVID-------PEGRRI 392

Query: 463  RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
            RI    K + +R   +           G  V RHL DGD+VL NRQP+LH+ SIMAH VR
Sbjct: 393  RIMESNKENLARMIDI-----------GWTVERHLVDGDIVLFNRQPSLHRMSIMAHRVR 441

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            V+   KT R++ A C  YNADFDGDEMN+H PQ E ++AEA  ++   N  + P  G P+
Sbjct: 442  VMP-YKTFRLNLAVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHILSPRYGGPI 500

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
               IQDHI    LLT++  +  R+E  Q+L  +G+    L     +P +     R     
Sbjct: 501  IGGIQDHISGGYLLTREGAYFTREEVEQMLMFAGLDIKEL----PEPDKYDENGR----- 551

Query: 643  LPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRK 702
                       PLW+GK + + +                  LP D   T +  +K  D  
Sbjct: 552  -----------PLWSGKTIFSLL------------------LPDDL--TVWYRNKLCDEP 580

Query: 703  KNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVR 761
            +    +     ++ ++K     E V                 ++L+ +  +  +N  L+ 
Sbjct: 581  E----RCEALERLIEEKLMPDPEEV-----------------RKLAYDGFVYIQNGKLLS 619

Query: 762  GVIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLI--- 816
            G IDK  +   D  ++  +   YG   A   L  +++L    +   GFT G+DD  +   
Sbjct: 620  GAIDKKAYGREDGIILDLIVREYGVERARQFLDQVTKLTIWVITHKGFTTGIDDEDLPEE 679

Query: 817  ----LKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
                +++  RE +  +    E  KR  LE L  +   E    K+ + + +A    G  A 
Sbjct: 680  AKDRIREIIREAEERVEKLIEAYKRGELEPLPGKTLEETLESKIMAVLAEARDNAGAVAE 739

Query: 873  AYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
             Y  M      + HT                       +M  +GA+G  +N  Q+++ LG
Sbjct: 740  KYLGM------DNHT----------------------VIMAKTGARGKILNITQMAALLG 771

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ + GKR+ R   G+ L  F P D   RA GF+++ + +GL PQEY+FH M GREGLVD
Sbjct: 772  QQSIRGKRLYRGFRGRVLSHFKPGDLGARARGFVVNSYKSGLSPQEYFFHAMGGREGLVD 831

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            TAV+T++SGY+QR LI  L+ LK+ YD +VRD  G IVQF YGEDGVD
Sbjct: 832  TAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGVIVQFRYGEDGVD 879



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG +   CPGHFGHI+L  PV +      ++ +L+  C  C   K +  E+E+ ++K
Sbjct: 60  CETCGAKAGECPGHFGHIELARPVIHVGFAKTIHRILESTCRECGRIKLTDEEIEEYMKK 119

Query: 61  LEL 63
           LEL
Sbjct: 120 LEL 122


>gi|390960610|ref|YP_006424444.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. CL1]
 gi|390518918|gb|AFL94650.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. CL1]
          Length = 905

 Score =  353 bits (905), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 266/826 (32%), Positives = 394/826 (47%), Gaps = 155/826 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            ++PS+V+D +EK+ + +  L             +KA      L V+ VPP+  R PS   
Sbjct: 181  MMPSEVRDRLEKIPDKDLPLLGL--------HPEKARPEWMVLTVLPVPPVTMR-PSITL 231

Query: 302  DSVM--EHPQTVLLSKVLQANIYL-ANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAA 358
            +S +  E   T  L  +++ N  L +N     P    +I   W  LQ  V    + + + 
Sbjct: 232  ESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQ--LIIEDLWDLLQYHVTTYINNETSG 289

Query: 359  -------GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
                     R + + + Q L+ KEG FR  L GKRVN++ R+VISPDP +++NE+G+P  
Sbjct: 290  IPPAKHKSGRPLKT-LSQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPIA 348

Query: 412  FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRIS------ 465
             A+ LT PE+VT +N  KL+  ++NG E +PGA + +D       P  +++R+       
Sbjct: 349  VAMELTVPEKVTEFNFEKLKKMVLNGPEKYPGANYVID-------PEGRRIRLMENNLEI 401

Query: 466  IGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLK 525
            I  +LD                  G  V RHL DGD+VL NRQP+LH+ SIMAH VRV+ 
Sbjct: 402  IAERLDL-----------------GWTVERHLLDGDIVLFNRQPSLHRMSIMAHRVRVMP 444

Query: 526  GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSL 585
              +T R++ + C  YNADFDGDEMN+H PQ E ++AEA  ++   N  + P  G PL + 
Sbjct: 445  -YRTFRLNLSVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAG 503

Query: 586  IQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL 645
            IQDHI    LLT++  +  R E  Q+L  +G++   L                       
Sbjct: 504  IQDHISGGYLLTREGAYFTRSEVEQMLMFAGINVDKL----------------------- 540

Query: 646  LPAIWKPEP--------LWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADK 697
                  PEP        LW+GK + + +                  LP D   T +  +K
Sbjct: 541  ------PEPDKVENGVELWSGKTIFSLL------------------LPDDL--TIWYRNK 574

Query: 698  QSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN 757
              D                     ++ E +E K  EEK     +   K   +    I   
Sbjct: 575  LCDEP-------------------ERCEALE-KLIEEKLVPDPEEVRKLAYDGFTYIQNG 614

Query: 758  DLVRGVIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
             L+ G IDK  +   D  L+  +   YG   A   L  +++L    +   GFT  +DD  
Sbjct: 615  KLLSGAIDKKAYGREDGKLLDIIVREYGVERARQFLDQVTKLAIWVITHKGFTTAIDD-- 672

Query: 816  ILKDKERERKNHLHG-SEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
              +D  RE  + +H    E  +RV    +E     E++P+  K+ +E+ +     A +A 
Sbjct: 673  --EDLPREALDRIHEIIREAEERVE-RLIEAYKNGELEPLPGKT-LEETLESNIMAVLAE 728

Query: 875  FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
                      +  +  V  + L  G       N   +M  +GA+G  +N  Q+++ LGQQ
Sbjct: 729  ---------ARDNAGKVAEKYLGMG-------NHAVIMAKTGARGKMLNITQMAAMLGQQ 772

Query: 935  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
             + GKR+ R   G+ L  F P D   RA GF+ + + +GL PQEY+FH M GREGLVDTA
Sbjct: 773  SIRGKRLYRGYRGRVLTHFKPGDLGARARGFVTNSYKSGLTPQEYFFHAMGGREGLVDTA 832

Query: 995  VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            V+T++SGY+QR LI  L+ LK+ YD +VRD  G IVQF YGEDG+D
Sbjct: 833  VRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQFKYGEDGID 878



 Score = 56.6 bits (135), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG R   CPGHFGH++L  P+ +      ++ +L+  C  C   K +  E+E+ + K
Sbjct: 60  CETCGARAGECPGHFGHVELARPIIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYMHK 119

Query: 61  LELIIKGDIIAAK 73
            E++  GD   AK
Sbjct: 120 FEVM--GDRKKAK 130


>gi|190407445|gb|EDV10712.1| DNA-directed RNA polymerase III largest subunit [Saccharomyces
            cerevisiae RM11-1a]
 gi|207341165|gb|EDZ69295.1| YOR116Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259149599|emb|CAY86403.1| Rpo31p [Saccharomyces cerevisiae EC1118]
 gi|323331486|gb|EGA72901.1| Rpo31p [Saccharomyces cerevisiae AWRI796]
 gi|323352093|gb|EGA84630.1| Rpo31p [Saccharomyces cerevisiae VL3]
          Length = 1460

 Score =  352 bits (904), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 238/729 (32%), Positives = 367/729 (50%), Gaps = 129/729 (17%)

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVN--VLFDGKNAAGQRDMASGICQLLEKKEGLFRQKL 382
            N  +   D  ++ VA ++N   SVN  +L    N  G+     G CQ L+ K+G FR  L
Sbjct: 310  NNMMEHWDYLQLTVAMYIN-SDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNL 368

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
             GKRV+++ R+VISPDP L+++E+ +P   A  LTYPE+VT +N  KL++ I+NG  +HP
Sbjct: 369  SGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHP 428

Query: 443  GATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDV 502
            GA + L +    R       R+ + + L                   G +V RHL+DGDV
Sbjct: 429  GANYLLKRNEDARRNLRYGDRMKLAKNLQI-----------------GDVVERHLEDGDV 471

Query: 503  VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
            VL NRQP+LH+ SI++H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAE
Sbjct: 472  VLFNRQPSLHRLSILSHYAKI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAE 530

Query: 563  AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL 622
            A N++   N  + P +G+P+ +  QD I  + L++ KD+F +R    QLL    + S G+
Sbjct: 531  AINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLL---SMMSDGI 587

Query: 623  GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL--NHITRGRPPFVVER 680
              F   P                 PAI KP  LWTGKQV + ++  NH      P V+  
Sbjct: 588  EHFDIPP-----------------PAIMKPYYLWTGKQVFSLLIKPNH----NSPVVI-- 624

Query: 681  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
                                        L   NK+                       K+
Sbjct: 625  ---------------------------NLDAKNKVFV-------------------PPKS 638

Query: 741  KSKEKELSEEK--LLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALS 795
            KS   E+S+    ++I  + ++ GV+DK+   D   + + +T+   YG   A   ++ ++
Sbjct: 639  KSLPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMA 698

Query: 796  RLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID--P 853
            +L   FL   GF+ G++D+    D +++++  +    EI  R   E + L +  E++  P
Sbjct: 699  KLCARFLGNRGFSIGINDVTPADDLKQKKEELV----EIAYRKCDELITLFNKGELETQP 754

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS--L 911
               + +  +A  GG           + S++ +      INEL           NW +  +
Sbjct: 755  GCNEEQTLEAKIGG-----------LLSKVREEVGDVCINEL----------DNWNAPLI 793

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            M T G+KGS +N  Q+ + +GQQ + G RVP     ++LP F      P++ GF+ + F 
Sbjct: 794  MATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFF 853

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            +GL P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR +   IVQ
Sbjct: 854  SGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSANGIVQ 913

Query: 1032 FCYGEDGVD 1040
            F YG DG+D
Sbjct: 914  FTYGGDGLD 922



 Score = 84.0 bits (206), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 58/85 (68%), Gaps = 1/85 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            +E + + FL++   K+  +  +PG  +G + +QS+GEP TQMTL TFH AG   MNVTLG
Sbjct: 1063 SEKSVRKFLEIALFKYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLG 1122

Query: 1180 IPRLQEILTIASKDIKTPVITCPLL 1204
            +PR++EI+  ASK I TP+I   L+
Sbjct: 1123 VPRIKEIIN-ASKVISTPIINAVLV 1146


>gi|212223364|ref|YP_002306600.1| DNA-directed RNA polymerase subunit A' [Thermococcus onnurineus NA1]
 gi|212008321|gb|ACJ15703.1| Subunit A' of DNA-dependent RNA polymerase [Thermococcus onnurineus
            NA1]
          Length = 905

 Score =  352 bits (904), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 270/824 (32%), Positives = 392/824 (47%), Gaps = 151/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            ++PS+V+D +EK+ + +  L             +KA      L V+ VPP+  R PS   
Sbjct: 181  MMPSEVRDRLEKIPDKDLPLLGL--------HPEKARPEWMVLTVLPVPPVTMR-PSITL 231

Query: 302  DSVM--EHPQTVLLSKVLQANIYL-ANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAA 358
            +S +  E   T  L  +++ N  L +N     P    +I   W  LQ  V    + + + 
Sbjct: 232  ESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQ--LIIEDLWDLLQYHVTTYINNETSG 289

Query: 359  -------GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
                     R + + + Q L+ KEG FR  L GKRVN++ R+VISPDP +++NE+G+P  
Sbjct: 290  IPPAKHKSGRPLKT-LAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPIA 348

Query: 412  FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRIS------ 465
             A+ LT PE+VT +N  KL+  ++NG E +PGA + +D       P  +++R+       
Sbjct: 349  VAMELTVPEKVTEFNYEKLKKMVLNGPEKYPGANYVID-------PEGRRIRLMENNLEI 401

Query: 466  IGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLK 525
            I  KLD                  G  V RHL DGD+VL NRQP+LH+ SIMAH VRV+ 
Sbjct: 402  IAEKLDI-----------------GWTVERHLLDGDIVLFNRQPSLHRMSIMAHRVRVMP 444

Query: 526  GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSL 585
              KT R++ A C  YNADFDGDEMN+H PQ E ++AEA  ++   N  + P  G PL + 
Sbjct: 445  -YKTFRLNLAVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAG 503

Query: 586  IQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL 645
            IQDHI    LLT++  +  R E  Q+L  +GV    L     KP       + E  V   
Sbjct: 504  IQDHISGGYLLTREGAYFTRSEVEQMLMFAGVDVDKL----PKP------DKVENGV--- 550

Query: 646  LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKND 705
                     LW+GK + + +                  LP+D                  
Sbjct: 551  --------ELWSGKTIFSLL------------------LPEDL----------------- 567

Query: 706  KGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVID 765
               +   NK+  D   ++ E +E K  EEK     +   K   +    I    L+ GV+D
Sbjct: 568  --TIWYRNKLCDDP--ERCEALE-KLIEEKLIPDEEEVRKLAYDGFTYILNGKLLSGVVD 622

Query: 766  KAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDD-------LLI 816
            K  +   D  ++  +   YG   A   L  +++L    +   GFT  +DD       L  
Sbjct: 623  KKAYGREDGKILDIIVREYGVERARQFLDQVTKLAIWVITHKGFTTAIDDEDLPTEALDR 682

Query: 817  LKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFD 876
            +K+  RE +  ++   E  K   LE L  +   E     + + + +A    G  A  Y  
Sbjct: 683  IKEIIREAEERVNRLIEAYKNGELEPLPGKTLEETLESNIMAVLAEARDNAGKVAEKYLG 742

Query: 877  MKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
            M         T+ +VI                   M  +GA+G  +N  Q+++ LGQQ +
Sbjct: 743  M---------TNHAVI-------------------MAKTGARGKMLNITQMAAMLGQQSI 774

Query: 937  EGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVK 996
             GKR+ R    + L  F P D   RA GF+++ + +GL PQEY+FH M GREGLVDTAV+
Sbjct: 775  RGKRLYRGYRERVLTHFRPGDLGARARGFVVNSYKSGLTPQEYFFHAMGGREGLVDTAVR 834

Query: 997  TSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            T++SGY+QR LI  L+ LK+ YD +VRD  G IVQF YGEDGVD
Sbjct: 835  TAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQFKYGEDGVD 878



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG R   CPGHFGH++L  P+ +      ++ +L+  C  C   K +  E+++ ++K
Sbjct: 60  CETCGARAGDCPGHFGHVELARPIIHVGFAKTIHRVLESTCRECGRIKLTDEEIDEYMKK 119

Query: 61  LELIIKGDIIAAK 73
            E++  GD   AK
Sbjct: 120 FEVM--GDRKKAK 130


>gi|389860841|ref|YP_006363081.1| DNA-directed RNA polymerase subunit A' [Thermogladius cellulolyticus
            1633]
 gi|388525745|gb|AFK50943.1| DNA-directed RNA polymerase subunit A' [Thermogladius cellulolyticus
            1633]
          Length = 880

 Score =  352 bits (903), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 267/825 (32%), Positives = 395/825 (47%), Gaps = 140/825 (16%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P  F + ++     L P++V+  +EK+ +++  L          G    A      L V+
Sbjct: 160  PHTFYEDREEGIVKLTPAEVRSRLEKIPDDDVRLLG--------GDPTDARPEWMVLTVL 211

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
             VPP   R PS   ++ +  E   T  L  +++ N  L         NA +I   W  LQ
Sbjct: 212  PVPPRAVR-PSILLETGIRSEDDLTHKLVDIIRVNNRLREHVETGAPNA-LIEDEWELLQ 269

Query: 346  QSVNVLFD----GKNAAGQR--DMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDP 399
              V   FD    G   A  R      GI Q L+ KEG FR  L GKRV+++ R+VISPDP
Sbjct: 270  YHVTTYFDNEAPGIPQAKHRTGKTLKGIAQRLKGKEGRFRGNLRGKRVDFSARTVISPDP 329

Query: 400  YLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPN 459
             L++NE+G+P   A  LT PE+VTPWN+ ++R  ++NG +  PGA + +        P  
Sbjct: 330  NLSINEVGVPEVVAKVLTVPEKVTPWNIEEMRKLVLNGPDKWPGANYVIR-------PDG 382

Query: 460  KKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAH 519
            +K+ +         R A+      +++   G +V RHL DGDVVL NRQP+LH+ S+MAH
Sbjct: 383  RKISLKF-----VDRKAV------AESLAPGFIVERHLLDGDVVLFNRQPSLHRISVMAH 431

Query: 520  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNG 579
            +VRVL   KT R++   C  YNADFDGDEMN+H PQ E +RAEA  ++      + P  G
Sbjct: 432  IVRVLP-YKTFRLNLLVCPPYNADFDGDEMNLHVPQSEEARAEARILMLVEKHILTPRYG 490

Query: 580  DPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSE 639
             P+   +QD+I  A LLT K T L + E   LL  +G   S                   
Sbjct: 491  GPIIGGLQDYISGAFLLTNKSTILTKAEVIDLLSVAGYKGS------------------- 531

Query: 640  QEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQS 699
               LP  PAI +P   WTGKQ+++                    LP DF           
Sbjct: 532  ---LP-EPAIQRPVEYWTGKQIVSVF------------------LPGDF----------- 558

Query: 700  DRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-D 758
            + K+N   K++  + +                         +  +++   + L+I K   
Sbjct: 559  NYKRN--AKIASASAL-------------------------RCIDEDCPHDSLVIIKKGQ 591

Query: 759  LVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
            L+ GVIDKA         LVH + + +G + A   +  + R+F  F +M+GFT     LL
Sbjct: 592  LLEGVIDKASIGREEPESLVHWLIKEHGEDVARKFMDNVYRMFIRFSEMYGFTMSYYHLL 651

Query: 816  ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYF 875
            I   + RER   +   +   KR     +E      + P K    +E+ +    D  +   
Sbjct: 652  I-PPEARERIRSIIADK---KREVSRLIEEYRAGRLQP-KPGKTVEETLE---DEVIDLL 703

Query: 876  DMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQE 935
              ++  ++     + VI           T  N + +M  +G++G+ VN  Q+++ LGQQ 
Sbjct: 704  SKRLLDEV-----ADVITPYF-------TLANPVIVMARTGSRGNPVNLTQMAALLGQQT 751

Query: 936  LEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAV 995
            + GKR+ R    ++LP F P D  P A GF+   F+ GL P E +FH   GREGL+DTAV
Sbjct: 752  VRGKRLTRGYMDRSLPHFKPGDLGPEARGFVARGFVNGLSPIEMFFHAAGGREGLIDTAV 811

Query: 996  KTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            +TS+SGY+QR LI  L+ +++  D SVR  +G ++QF YGEDGVD
Sbjct: 812  RTSQSGYMQRRLINALQDVRVDIDGSVRTTNGEVIQFKYGEDGVD 856



 Score = 45.8 bits (107), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 25/53 (47%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C  CG  +  CPGHFGHI+L  PV +      ++  LK  C  C   K    E
Sbjct: 56  CPICGNTRDECPGHFGHIELAKPVIHAGFAKHIHMYLKTTCRVCGRVKLPENE 108


>gi|57641017|ref|YP_183495.1| DNA-directed RNA polymerase subunit A' [Thermococcus kodakarensis
            KOD1]
 gi|57159341|dbj|BAD85271.1| DNA-directed RNA polymerase, subunit A' [Thermococcus kodakarensis
            KOD1]
          Length = 906

 Score =  352 bits (903), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 266/824 (32%), Positives = 388/824 (47%), Gaps = 151/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            ++PS+V+D +EK+ + +  L             +K+      L V+ VPP+  R PS   
Sbjct: 181  MMPSEVRDRLEKIPDKDLPLLGL--------HPEKSRPEWMVLTVLPVPPVTMR-PSITL 231

Query: 302  DSVM--EHPQTVLLSKVLQANIYL-ANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAA 358
            +S +  E   T  L  +++ N  L +N     P    +I   W  LQ  V    + + + 
Sbjct: 232  ESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQ--LIIEDLWDLLQYHVTTYINNETSG 289

Query: 359  -------GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
                     R + + + Q L+ KEG FR  L GKRVN++ R+VISPDP +++NE+G+P  
Sbjct: 290  VPPAKHKSGRPLKT-LAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPLA 348

Query: 412  FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRIS------ 465
             A+ LT PE+VT +N  KL+  ++NG E +PGA + +D       P  +++R+       
Sbjct: 349  VAMELTVPEKVTEFNYEKLKQRVLNGPEKYPGANYVID-------PEGRRIRLMESNREL 401

Query: 466  IGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLK 525
            I  KLD                  G  V RHL+DGDVVL NRQP+LH+ SIMAH VRV+ 
Sbjct: 402  IAEKLDI-----------------GWTVERHLEDGDVVLFNRQPSLHRMSIMAHRVRVMP 444

Query: 526  GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSL 585
              +T R++   C  YNADFDGDEMN+H PQ E ++AEA  ++   N  + P  G PL + 
Sbjct: 445  -YRTFRLNLPVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAG 503

Query: 586  IQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL 645
            IQDHI    LLT++  +  R E  Q+L  +G+  +                      LP 
Sbjct: 504  IQDHISGGYLLTREGAYFTRYEVEQMLMFAGMDVNE---------------------LPE 542

Query: 646  LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKND 705
                   EPLW+GK + + +                  LP D   T +  +K  D     
Sbjct: 543  PDKYENGEPLWSGKTIFSLL------------------LPDDL--TIWYRNKLCDEP--- 579

Query: 706  KGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVID 765
                            ++ E +E K  EEK     +   K   +  + I    L+ G +D
Sbjct: 580  ----------------ERCEALE-KLIEEKLIPDPEEVRKLAYDGFVYIQNGKLLSGAVD 622

Query: 766  KAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDD-------LLI 816
            K  +   D  L+  +   YG   A   L  +++L    +   GFT  +DD       +  
Sbjct: 623  KKAYGREDGKLLDIIVREYGVERARQFLDQVTKLTIWVITHKGFTTAIDDEDLPQEAIDR 682

Query: 817  LKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFD 876
            + +  RE +  +    E  KR  LE L  +   E    K+ + + +A    G  A  Y  
Sbjct: 683  IHEIIREAEEKVQRLIEAYKRGELEPLPGKTLEETLESKIMAVLAEARDNAGKVAERYLG 742

Query: 877  MKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
            M      N H                        +M  +GA+G  +N  Q+++ LGQQ +
Sbjct: 743  M------NNHA----------------------VIMAKTGARGKILNITQMAAMLGQQSI 774

Query: 937  EGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVK 996
             GKR+ R   G+ L  F P D   RA GF+ + + +GL PQEY+FH M GREGLVDTAV+
Sbjct: 775  RGKRLYRGYRGRVLTHFKPGDLGARARGFVTNSYKSGLTPQEYFFHAMGGREGLVDTAVR 834

Query: 997  TSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            T++SGY+QR LI  L+ LK+ YD +VRD  G IVQF YGEDGVD
Sbjct: 835  TAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQFKYGEDGVD 878



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 38/64 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG R   CPGHFGHI+L  PV +      ++ +L+  C  C   K +  E+E+ ++K
Sbjct: 60  CETCGARAGECPGHFGHIELARPVIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYMQK 119

Query: 61  LELI 64
            E++
Sbjct: 120 FEVM 123


>gi|256272995|gb|EEU07959.1| Rpo31p [Saccharomyces cerevisiae JAY291]
 gi|349581277|dbj|GAA26435.1| K7_Rpo31p [Saccharomyces cerevisiae Kyokai no. 7]
          Length = 1460

 Score =  352 bits (902), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 240/729 (32%), Positives = 368/729 (50%), Gaps = 129/729 (17%)

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVN--VLFDGKNAAGQRDMASGICQLLEKKEGLFRQKL 382
            N  +   D  ++ VA ++N   SVN  +L    N  G+     G CQ L+ K+G FR  L
Sbjct: 310  NNMMEHWDYLQLTVAMYIN-SDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNL 368

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
             GKRV+++ R+VISPDP L+++E+ +P   A  LTYPE+VT +N  KL++ I+NG  +HP
Sbjct: 369  SGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHP 428

Query: 443  GATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDV 502
            GA + L +    R       R+ + + L                   G +V RHL+DGDV
Sbjct: 429  GANYLLKRNEDARRNLRYGDRMKLAKNLQI-----------------GDVVERHLEDGDV 471

Query: 503  VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
            VL NRQP+LH+ SI++H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAE
Sbjct: 472  VLFNRQPSLHRLSILSHYAKI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAE 530

Query: 563  AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL 622
            A N++   N  + P +G+P+ +  QD I  + L++ KD+F +R    QLL    + S G+
Sbjct: 531  AINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLL---SMMSDGI 587

Query: 623  GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL--NHITRGRPPFVVER 680
              F   P                 PAI KP  LWTGKQV + ++  NH      P V+  
Sbjct: 588  EHFDIPP-----------------PAIMKPYYLWTGKQVFSLLIKPNH----NSPVVI-- 624

Query: 681  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
                         N D                         K K  V  K         +
Sbjct: 625  -------------NLD------------------------AKNKVFVPPK---------S 638

Query: 741  KSKEKELSEEK--LLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALS 795
            KS   E+S+    ++I  + ++ GV+DK+   D   + + +T+   YG   A   ++ ++
Sbjct: 639  KSLPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMA 698

Query: 796  RLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID--P 853
            +L   FL   GF+ G++D+    D +++++  +    EI  R   E + L +  E++  P
Sbjct: 699  KLCARFLGNRGFSIGINDVTPADDLKQKKEELV----EIAYRKCDELITLFNKGELETQP 754

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS--L 911
               + +  +A  GG           + S++ +      INEL           NW +  +
Sbjct: 755  GCNEEQTLEAKIGG-----------LLSKVREEVGDVCINEL----------DNWNAPLI 793

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            M T G+KGS +N  Q+ + +GQQ + G RVP     ++LP F      P++ GF+ + F 
Sbjct: 794  MATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFF 853

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            +GL P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR +   IVQ
Sbjct: 854  SGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSANGIVQ 913

Query: 1032 FCYGEDGVD 1040
            F YG DG+D
Sbjct: 914  FTYGGDGLD 922



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 66/103 (64%), Gaps = 4/103 (3%)

Query: 1102 LPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQM 1161
            +PD +K +  +    +  +E + + FL++   K+  +  +PG  +G + +QS+GEP TQM
Sbjct: 1048 VPDNVKTSVSQL---YRISEKSVRKFLEIALFKYRKARLEPGTAIGAIGAQSIGEPGTQM 1104

Query: 1162 TLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            TL TFH AG   MNVTLG+PR++EI+  ASK I TP+I   L+
Sbjct: 1105 TLKTFHFAGVASMNVTLGVPRIKEIIN-ASKVISTPIINAVLV 1146


>gi|242398380|ref|YP_002993804.1| DNA-directed RNA polymerase subunit alpha [Thermococcus sibiricus MM
            739]
 gi|242264773|gb|ACS89455.1| DNA-directed RNA polymerase subunit alpha [Thermococcus sibiricus MM
            739]
          Length = 905

 Score =  352 bits (902), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 264/822 (32%), Positives = 397/822 (48%), Gaps = 147/822 (17%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            ++PS+++D +EK+ + +  L     +  +  +          L V+ VPP+  R PS   
Sbjct: 181  MMPSEIRDRLEKIPDKDLPLLGLNPENSRPEW--------MVLTVLPVPPVSVR-PSITL 231

Query: 302  DSVM--EHPQTVLLSKVLQANIYL-ANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAA 358
            +S +  E   T  L  +++ N  L  N     P    +I   W  LQ  V   FD + + 
Sbjct: 232  ESGIRAEDDLTHKLVDIIRINARLKQNIEAGAPQ--LIIEDLWDLLQYHVTTYFDNETSG 289

Query: 359  -------GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
                     R + + + Q L+ KEG FR+ L GKRVN++ R+VISPDP +++NE+G+P  
Sbjct: 290  IPPAKHKSGRPLKT-LAQRLKGKEGRFRKNLSGKRVNFSARTVISPDPMISINEVGVPLI 348

Query: 412  FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLD 471
             A+ LT PE+VT +N+ KLR  I+NG E +PGA + +D       P  +++R+ +   L+
Sbjct: 349  VAMELTVPEKVTDFNLEKLRKMILNGPEKYPGANYVID-------PQGRRIRL-MESNLE 400

Query: 472  TSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLR 531
            T           +D    G  V RHL +GDVVL NRQP+LH+ SIMAH VRV+   KT R
Sbjct: 401  TI----------ADMIDIGWTVERHLMNGDVVLFNRQPSLHRMSIMAHRVRVMP-YKTFR 449

Query: 532  MHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIV 591
            ++ A C  YNADFDGDEMN+H PQ E ++AEA  ++   N  + P  G P+   IQDHI 
Sbjct: 450  LNLAVCPPYNADFDGDEMNLHVPQTEEAQAEARILMEVQNHILSPRYGGPIIGGIQDHIS 509

Query: 592  SAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWK 651
               LLT++  +  + E   +L  +GV                     E + LP    +  
Sbjct: 510  GGYLLTREGAYFTKYEVEHMLMFAGV---------------------EVKELPKPDKVEN 548

Query: 652  PEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSK 711
                W+GK V + +                  LP++                     +  
Sbjct: 549  GIEYWSGKTVFSLL------------------LPENL-------------------TIWY 571

Query: 712  TNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFA- 770
             NK+  D S  + E +E K  EEK     K  +K  ++  + I K  L+ G IDK  +  
Sbjct: 572  RNKLCDDPS--QCEPIE-KLIEEKLIPSEKEVKKVATDGFVYILKGKLLSGAIDKKAYGR 628

Query: 771  -DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLH 829
             D  L++ +   YG   A   L  +++L    +   GFT G+DD  +  + +   K  + 
Sbjct: 629  EDGELLNIIVREYGVERARQFLDQVTKLAIWVITHKGFTTGIDDEDLPGEAKARIKEIIM 688

Query: 830  GSEEIGKRVHLEALELEDGAEIDPI-----------KLKSEIEKAMRGGGDAAVAYFDMK 878
             +E   +R+    +E     E++P+           ++ + + +A    G  A  Y  M 
Sbjct: 689  EAEGKVQRL----IEAYKNGELEPLPGKTLEETLESRIMAVLSEARDNAGKVAERYLGM- 743

Query: 879  MTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEG 938
                 N HT                       +M  +GA+G  +N  Q+++ LGQQ + G
Sbjct: 744  -----NNHT----------------------VIMAKTGARGKILNITQMAAILGQQSIRG 776

Query: 939  KRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTS 998
            KR+ R    + L  F   D   RA GFI++ + +GL PQEY+FH M GREGLVDTAV+T+
Sbjct: 777  KRLYRGYRSRVLSHFKAGDLGARAKGFIVNSYKSGLTPQEYFFHAMGGREGLVDTAVRTA 836

Query: 999  RSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            +SGY+QR LI  L+ LK+ YD +VRD  G +VQF YGEDGVD
Sbjct: 837  QSGYMQRRLINALQDLKVDYDGTVRDPTGIVVQFRYGEDGVD 878



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG     CPGHFGHI+L  PV +      +Y  L+  C  C   K +  E+E    K
Sbjct: 60  CETCGANYKECPGHFGHIELARPVIHVGFAKTIYRTLESTCRECGRIKLTDEEIEDYFGK 119

Query: 61  LEL 63
           L +
Sbjct: 120 LNI 122


>gi|123356996|ref|XP_001295664.1| RNA polymerase Rpb1, domain 2 family protein [Trichomonas vaginalis
            G3]
 gi|121874683|gb|EAX82734.1| RNA polymerase Rpb1, domain 2 family protein [Trichomonas vaginalis
            G3]
          Length = 1004

 Score =  351 bits (901), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 199/463 (42%), Positives = 280/463 (60%), Gaps = 30/463 (6%)

Query: 759  LVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLI 816
            L  G+IDKAQF  + +G+VHT+ ELYGS+ A   L+ L+RLFT F+Q HGF+CG+ D+++
Sbjct: 298  LCTGIIDKAQFGASKFGMVHTIYELYGSDMASRFLTMLTRLFTYFMQCHGFSCGIADMIV 357

Query: 817  LKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFD 876
                E  R+     ++++  +   + +E     E   + LK  +   ++   D    Y  
Sbjct: 358  NHKGEGMREKMKEETDKVAIKTANDFVEEFGTKETQYMNLKDRLWDLIKDK-DMKERYDH 416

Query: 877  MKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
            M M   LNK  +S  +N +    + KP  +N +++MT+SGAKGS VN  QIS  LGQQ L
Sbjct: 417  MIM-GNLNK-AASDTLNAIFPANITKPFPQNHLTMMTSSGAKGSVVNATQISCLLGQQSL 474

Query: 937  EGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVK 996
            EGKRVP M SGK LPSF   D +P++GGF+  RFLTGL P+EYYFH M GREGL DTAVK
Sbjct: 475  EGKRVPLMRSGKALPSFEFMDMSPQSGGFVSSRFLTGLTPEEYYFHAMGGREGLTDTAVK 534

Query: 997  TSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAAR 1056
            T+ +GYLQRC+IKN+E L+ SYD +VRDAD +IVQF YGEDG+D  Q  +I+KFD +   
Sbjct: 535  TANTGYLQRCIIKNIEGLRASYDGTVRDADDTIVQFLYGEDGIDPMQNKYITKFDFMLKN 594

Query: 1057 ERGRGRGRN--KFCDKGSHTFVMGRNQEMIYKKCSGQLDASNA----------YIMELPD 1104
                 +  N  K  +K         N ++  K   G+    N+          Y+  +  
Sbjct: 595  IDSYSQKLNIEKVGEKA--------NCDLAQKVIDGEKVNENSLVQATYHPHRYVGSISQ 646

Query: 1105 ALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVL----SLAQPGEPVGLLASQSVGEPSTQ 1160
            + ++   K+ D  L  +   +D +K ++   V     S  QPGE VG++A++++GEP+TQ
Sbjct: 647  SFENALNKYCDD-LKKKGTDEDTIKNLRAVAVFNYFSSQIQPGEVVGVIAAEAIGEPATQ 705

Query: 1161 MTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            MTLNTFHLAG G  NVTLGIPRL+EIL +A++   TP++   L
Sbjct: 706  MTLNTFHLAGYGGTNVTLGIPRLREILIVATRTPATPMMFLSL 748



 Score =  243 bits (620), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 126/291 (43%), Positives = 192/291 (65%), Gaps = 31/291 (10%)

Query: 383 MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
           MGKRVN++ RSVI+PDPY+A +E+G+P  FA  L+YPERV  +N  +L  +I+NGA+ +P
Sbjct: 1   MGKRVNFSARSVIAPDPYVATDEVGVPAVFAKTLSYPERVRDYNKERLSKAILNGADNYP 60

Query: 443 GATHYLDKL-STMRLPPNKK-MRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDG 500
           GA   +D    T +L   K+ +R S   K+            +SD +F    V RH  +G
Sbjct: 61  GANLIIDPYGQTFQLKGMKESLRQSYASKI----------FAESDGDFPWT-VGRHAING 109

Query: 501 DVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSR 560
           D VL+NRQPTLH+ SI+A  V+VL  ++T+RMHY+NC+++NADFDGDE+N+H PQ+E++R
Sbjct: 110 DYVLINRQPTLHRVSILAMRVKVLPKQRTIRMHYSNCASFNADFDGDEINLHLPQNELAR 169

Query: 561 AEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSS 620
           AEA  +  ++  Y+ P+ G+P+R LIQDH+ + ALLT K+ FL + ++ +L+++      
Sbjct: 170 AEANILSLSSRHYITPTAGNPIRGLIQDHVDAGALLTMKNNFLTKTQYQELVFT------ 223

Query: 621 GLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITR 671
              +F G+   ++       E+LP  PAI KP  LWTGKQVI+ ++ ++T+
Sbjct: 224 ---AFGGEINHKL-------EMLP--PAIIKPTQLWTGKQVISTIIINLTK 262


>gi|365763066|gb|EHN04597.1| Rpo31p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1460

 Score =  351 bits (901), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 240/729 (32%), Positives = 367/729 (50%), Gaps = 129/729 (17%)

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVN--VLFDGKNAAGQRDMASGICQLLEKKEGLFRQKL 382
            N  +   D  ++ VA ++N   SVN  +L    N  G+     G CQ L+ K+G FR  L
Sbjct: 310  NNMMEHWDYLQLTVAMYIN-SDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNL 368

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
             GKRV+++ R+VISPDP L+++E+ +P   A  LTYPE+VT +N  KL++ I+NG  +HP
Sbjct: 369  SGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHP 428

Query: 443  GATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDV 502
            GA + L +    R       R+ + + L                   G +V RHL+DGDV
Sbjct: 429  GANYLLKRNEDARRNLRYGDRMKLAKNLQI-----------------GDVVERHLEDGDV 471

Query: 503  VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
            VL NRQP+LH+ SI++H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAE
Sbjct: 472  VLFNRQPSLHRLSILSHYAKI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAE 530

Query: 563  AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL 622
            A N++   N  + P +G+P+ +  QD I  + L++ KD+F +R    QLL    + S G+
Sbjct: 531  AINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLL---SMMSDGI 587

Query: 623  GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL--NHITRGRPPFVVER 680
              F   P                 PAI KP  LWTGKQV + ++  NH      P V+  
Sbjct: 588  EHFDIPP-----------------PAIMKPYYLWTGKQVFSLLIKPNH----NSPVVI-- 624

Query: 681  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
                         N D                         K K  V  K         +
Sbjct: 625  -------------NLD------------------------AKNKVFVPPK---------S 638

Query: 741  KSKEKELSEEK--LLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALS 795
            KS   E+S+    ++I  + ++ GV+DK+   D   + + +T+   YG   A   ++ ++
Sbjct: 639  KSLPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMA 698

Query: 796  RLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID--P 853
            +L   FL   GF+ G++D+    D +++++  +    EI  R   E + L +  E++  P
Sbjct: 699  KLCARFLGNRGFSIGINDVTPADDLKQKKEELV----EIAYRKCDELITLFNKGELETQP 754

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS--L 911
               + +  +A  GG           + S++ +      INEL           NW +  +
Sbjct: 755  GCNEEQTLEAKIGG-----------LLSKVREEVGDVCINEL----------DNWNAPLI 793

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            M T G+KGS +N  Q+ + +GQQ + G RVP     ++LP F      P + GF+ + F 
Sbjct: 794  MATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPZSKGFVRNSFF 853

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            +GL P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR +   IVQ
Sbjct: 854  SGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSANGIVQ 913

Query: 1032 FCYGEDGVD 1040
            F YG DG+D
Sbjct: 914  FTYGGDGLD 922



 Score = 84.0 bits (206), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 58/85 (68%), Gaps = 1/85 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            +E + + FL++   K+  +  +PG  +G + +QS+GEP TQMTL TFH AG   MNVTLG
Sbjct: 1063 SEKSVRKFLEIALFKYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLG 1122

Query: 1180 IPRLQEILTIASKDIKTPVITCPLL 1204
            +PR++EI+  ASK I TP+I   L+
Sbjct: 1123 VPRIKEIIN-ASKVISTPIINAVLV 1146


>gi|449016275|dbj|BAM79677.1| RNA polymerase III largest subunit [Cyanidioschyzon merolae strain
            10D]
          Length = 1930

 Score =  351 bits (901), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 250/769 (32%), Positives = 380/769 (49%), Gaps = 117/769 (15%)

Query: 282  FFLGVVLVPPIKFRL-----PSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
              L  V VPP+  R      PS+G     E   T++L+ +  AN  +    V   D  K+
Sbjct: 529  MLLRCVAVPPVCIRPSVCNDPSQGS---TEDDLTIMLADIAGANALVMEQLVKGSDLGKL 585

Query: 337  IVARWMNLQQSV----NVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACR 392
            + A W +LQ +V    +  + G  A+       G+CQ L+ K+G FR  L GKRV+++ R
Sbjct: 586  LDA-WDHLQLAVARYIHADYPGLPASLYYKAQIGLCQRLKGKQGRFRGNLSGKRVDFSAR 644

Query: 393  SVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLS 452
            +VISPDP L+++++G+P   A  LTYPERVTPWN+ +LR S++ G + HPGA + L    
Sbjct: 645  TVISPDPNLSIDQVGVPLRIAKILTYPERVTPWNIDQLRKSVLRGPDRHPGANYVL---- 700

Query: 453  TMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLH 512
                P   K  +  G + D +R   V           G +V RHL+DGD+VL NRQP+LH
Sbjct: 701  ---FPDGSKRFLRFGDREDIARSLCV-----------GCVVERHLRDGDLVLFNRQPSLH 746

Query: 513  KPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQ 572
            + SIMAH V+V+ G +T R +   C+ YNADFDGDEMN+H PQ E +RAEA  ++     
Sbjct: 747  RLSIMAHSVKVIAG-RTFRFNECVCAPYNADFDGDEMNLHVPQTEEARAEARALLAVPQN 805

Query: 573  YVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQR 632
             + P NG+PL +  QD I +  LLT KD F  R    Q L S G+      +  G+    
Sbjct: 806  LLSPRNGEPLIACTQDFITALYLLTHKDVFYGRWAAVQCL-SFGLEPEASAAILGR---- 860

Query: 633  VLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 692
                      LP  PAI  P PLWTGKQ+ +A            +V+    L  +  +  
Sbjct: 861  ----------LP-EPAILHPLPLWTGKQLFSA------------LVQADPALSDEAVRVL 897

Query: 693  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL 752
               D  +++    +G   + +     +S    E++ G+  +     ++K           
Sbjct: 898  ICFDA-TEKAYTHEGIWCRADAYVCVRSA---ELISGQVAKRTLGSQSKQS--------- 944

Query: 753  LIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
            L+Y                      +Q   G   A   ++ L+R  + +L  +GF+ G+D
Sbjct: 945  LLY---------------------VLQREAGPLLAVRCMNRLARFASRWLSEYGFSFGID 983

Query: 813  DLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
            D+      E  +            R+     +++D  E    + ++ + +   G  D   
Sbjct: 984  DVRPSPALEHAK----------AVRIRNAYTQVQDAIE----RYRAGVMRPRPGYTDEET 1029

Query: 873  AYFDM-KMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHL 931
              + + ++ S L +H     + E+           N   +M  SGAKGS +N  Q+ + +
Sbjct: 1030 LEWHIHRLLSDLREHAGQVCLQEM--------APHNTAMIMAMSGAKGSTINISQMVACV 1081

Query: 932  GQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLV 991
            GQQ + G RV      +TLP F   D +P AGGF+ + F +G+   E++FH MAGREGLV
Sbjct: 1082 GQQTVNGTRVRAGFHQRTLPHFMRGDKSPEAGGFVANSFYSGMNAIEFFFHSMAGREGLV 1141

Query: 992  DTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            DTAVKT+ +GY+QR  +K LE L+++YD +VR +D S+VQ  +G DG+D
Sbjct: 1142 DTAVKTAETGYMQRRFMKALEDLRVAYDDTVRTSDASLVQLRFGGDGLD 1190



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 55/79 (69%), Gaps = 1/79 (1%)

Query: 1125 QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
            Q  + L + K   +L +PG  VG +A+QS+GEPSTQMTL TFH AG   MN+T G+PR++
Sbjct: 1347 QLLMTLTERKLRRALIEPGTAVGAIAAQSIGEPSTQMTLKTFHFAGVASMNITQGVPRIK 1406

Query: 1185 EILTIASKDIKTPVITCPL 1203
            E++  A++ I TP++T  L
Sbjct: 1407 ELVN-ATRRIATPLVTAYL 1424



 Score = 49.3 bits (116), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 31/55 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVE 55
           C TCG     C GHFGHI+LV+PV++    + L  +L+ IC  C    A  + VE
Sbjct: 224 CATCGLSLADCAGHFGHIELVLPVFHVGYLSFLLQVLQCICKRCSGLLADAQFVE 278


>gi|401623626|gb|EJS41719.1| rpo31p [Saccharomyces arboricola H-6]
          Length = 1460

 Score =  350 bits (899), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 242/729 (33%), Positives = 366/729 (50%), Gaps = 129/729 (17%)

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVN--VLFDGKNAAGQRDMASGICQLLEKKEGLFRQKL 382
            N  +   D  ++ VA ++N   SVN  +L    N  G+     G CQ L+ K+G FR  L
Sbjct: 310  NNMMEHWDYLQLTVAMYIN-SDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNL 368

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
             GKRV+++ R+VISPDP L+++E+ +P   A  LTYPE+VT +N  KL++ ++NG  +HP
Sbjct: 369  SGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELVVNGPNVHP 428

Query: 443  GATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDV 502
            GA + L K    R       R+ + + L                   G +V RHL+DGDV
Sbjct: 429  GANYLLKKNEDARRNLRYGDRMKLAKNLQI-----------------GDVVERHLEDGDV 471

Query: 503  VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
            VL NRQP+LH+ SI++H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAE
Sbjct: 472  VLFNRQPSLHRLSILSHYAKI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAE 530

Query: 563  AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL 622
            A N++   N  + P +G+P+ +  QD I  + L++ KD+F +R    QLL    + S G+
Sbjct: 531  AINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLL---SMMSDGV 587

Query: 623  GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL--NHITRGRPPFVVER 680
              F   P                 PAI KP  LWTGKQV + ++  NH      P V+  
Sbjct: 588  EQFDIPP-----------------PAIMKPYYLWTGKQVFSLLIKPNH----NSPVVI-- 624

Query: 681  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
                         N D                         K K  V  K         +
Sbjct: 625  -------------NLD------------------------AKNKVFVPPK---------S 638

Query: 741  KSKEKELSEEK--LLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALS 795
            KS   E+S+    ++I  ++++ GV+DK+   D   + + +T+   YG   A   ++ +S
Sbjct: 639  KSLPSEMSQNDGFVIIRGSNILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMS 698

Query: 796  RLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL-ELEDGA-EIDP 853
            +L   FL   GF+ G++D+    D +++++  +    EI  R   E + E   G  E  P
Sbjct: 699  KLCARFLGNRGFSIGINDVTPADDLKQKKEELV----EIAYRKCDELITEFNRGELETQP 754

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS--L 911
               + +  +A  GG             S++ +      INEL           NW +  +
Sbjct: 755  GCNEEQTLEAKIGG-----------FLSKVREEVGDVCINEL----------DNWNAPLI 793

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            M T G+KGS +N  Q+ + +GQQ + G RVP     ++LP F      P++ GF+ + F 
Sbjct: 794  MATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFF 853

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            +GL P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR +   IVQ
Sbjct: 854  SGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSANGIVQ 913

Query: 1032 FCYGEDGVD 1040
            F YG DG+D
Sbjct: 914  FTYGGDGLD 922



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 66/103 (64%), Gaps = 4/103 (3%)

Query: 1102 LPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQM 1161
            +PD +K +  +    +  +E + + FL++   K+  +  +PG  +G + +QS+GEP TQM
Sbjct: 1048 VPDNIKISVSQL---YRISEKSVKKFLEIALFKYRKARLEPGTAIGAIGAQSIGEPGTQM 1104

Query: 1162 TLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            TL TFH AG   MNVTLG+PR++EI+  ASK I TP+I   L+
Sbjct: 1105 TLKTFHFAGVASMNVTLGVPRIKEIIN-ASKVISTPIINAVLV 1146



 Score = 40.4 bits (93), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 29/61 (47%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC      C GHFGH+ L +PV++   F     +L+ IC  C     S  +  + + +
Sbjct: 67  CTTCHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSSILLSETDKRQFLHE 126

Query: 61  L 61
           L
Sbjct: 127 L 127


>gi|312073209|ref|XP_003139417.1| RNA polymerase Rpb1 [Loa loa]
 gi|307765420|gb|EFO24654.1| RNA polymerase Rpb1 [Loa loa]
          Length = 1403

 Score =  350 bits (899), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 286/971 (29%), Positives = 452/971 (46%), Gaps = 163/971 (16%)

Query: 283  FLGVVLVPPIKFR--LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
             L  + VPP   R  + S+      E   T+ LS+++  N  +   +  +    K I   
Sbjct: 248  ILTRIPVPPCCIRPSVVSEVKSGTTEDDITMKLSEIMLINDVIKK-HKKEGSPTKTISET 306

Query: 341  WMNLQQSVNVLFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
            W +LQ    +  + + +    DM       G  Q L+ K+G FR  L GKRV+++ R+VI
Sbjct: 307  WDHLQVQCALYINSELSGLPPDMQPKRATRGFTQRLKGKQGRFRGNLSGKRVDFSGRTVI 366

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMR 455
            SPDP L ++++G+P + A  LT+PE V   N+ ++R  I+NG +IHPGA H ++     R
Sbjct: 367  SPDPNLKIDQVGVPVHVAKILTFPEIVNEANIERMRKLILNGDDIHPGANHIVE-----R 421

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
               NK+      R++  ++  +            G ++ RHL D D+VL NRQP+LHK S
Sbjct: 422  ATGNKRFLRYGNRQITAAQLKV------------GDVIERHLDDNDIVLFNRQPSLHKIS 469

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            IM+H  +V+ G +T R +   C+ YNADFDGDEMN+H PQ   +RAEA  ++   +  + 
Sbjct: 470  IMSHRAKVVPG-RTFRFNECACTPYNADFDGDEMNLHVPQTYEARAEASLLMGVKSNLIT 528

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 635
            P +G+PL + IQD I    LLT KD+F  R E  +  +++ +  S               
Sbjct: 529  PRSGEPLIAAIQDFITGTYLLTHKDSFFPRSEVHR--FAAAIIDSN-------------- 572

Query: 636  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
            S+ +Q +    PAI KP  LWTGKQ+   ++      RP                     
Sbjct: 573  SKKQQRIRIPPPAILKPAELWTGKQLAELII------RP--------------------- 605

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
                D K N    L+ T K +K  +G ++  V+                    +  ++I 
Sbjct: 606  --DVDSKIN----LNLTTK-NKSYTGNEEFCVK--------------------DSYVIIR 638

Query: 756  KNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
             + L+ GV+DKA     +   + + +   +G + A   +  L R+ +VFL   GF+ G+ 
Sbjct: 639  NSVLLCGVLDKALLGSGSKTSIFYILLRDFGEDAAIDAMWRLGRMASVFLSNRGFSIGIG 698

Query: 813  DLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
            D+   K   +E+ + L    ++    ++E+L+ E   +  P   + E  +A+        
Sbjct: 699  DVRPSKALLKEKSDLLRNGYKVCDD-YIESLK-EGRLKAQPGCTEYETLEAL-------- 748

Query: 873  AYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
                +K  S +  H   + +  L        +  N    M   G+KGS +N  Q+ + +G
Sbjct: 749  ---ILKELSAIRDHAGQACLRNL--------SRHNAPLTMAVCGSKGSFINISQMIACVG 797

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ + G R P     ++LP F      P A GF+ + F +GL P E++FH M GREGLVD
Sbjct: 798  QQAISGHRPPDGFEDRSLPHFERRQKTPAAKGFVENSFYSGLTPTEFFFHTMGGREGLVD 857

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD------------ 1040
            TAVKT+ +GY+QR L+K LE L I+YD +VR + G +++F +GEDG+D            
Sbjct: 858  TAVKTAETGYMQRRLVKCLEDLCINYDGTVRSSVGDVIEFKFGEDGLDPALMESKDGGVV 917

Query: 1041 --------VHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQL 1092
                       T   S  D     +  +    +   +K     VM R Q  +    S  L
Sbjct: 918  DFKHILEHTRHTVPHSTEDVDITNDEIQKIVTDTINEKIGKEHVMFREQ--LESFISEYL 975

Query: 1093 DASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHK-FVLSLAQPGEPVGLLAS 1151
              ++ Y     + +K +    + +   N+   Q+F +  + K   LS AQ    V L + 
Sbjct: 976  RKTDKYYKLSKNCIK-HMGLMSSETQCNDCKNQNFFRETEIKSHCLSRAQAFGFVDLCSR 1034

Query: 1152 Q---SVGEPST---------------QMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKD 1193
            +   ++ EP T               QMTL TFH AG   MN+T G+PR++EI+    K 
Sbjct: 1035 KFRRAICEPGTAVGAVAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIIN-GVKL 1093

Query: 1194 IKTPVITCPLL 1204
            I TP+IT  L+
Sbjct: 1094 ISTPIITAALM 1104



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC Q    C GHFG+IDL +PV++   F L   +L+ IC FC
Sbjct: 70  CQTCKQNLVDCVGHFGYIDLAIPVFHVGFFRLTIQMLQCICKFC 113


>gi|6324690|ref|NP_014759.1| Rpo31p [Saccharomyces cerevisiae S288c]
 gi|133356|sp|P04051.1|RPC1_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
            polymerase III subunit C1; AltName: Full=DNA-directed RNA
            polymerase III largest subunit; AltName: Full=RNA
            polymerase III subunit C160
 gi|4400|emb|CAA26905.1| RNA polymerase III largest subunit [Saccharomyces cerevisiae]
 gi|1050828|emb|CAA62123.1| ORF O3254 [Saccharomyces cerevisiae]
 gi|1164961|emb|CAA64036.1| YOR3254c [Saccharomyces cerevisiae]
 gi|1420309|emb|CAA99314.1| RPO31 [Saccharomyces cerevisiae]
 gi|151945738|gb|EDN63979.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
 gi|285814998|tpg|DAA10891.1| TPA: Rpo31p [Saccharomyces cerevisiae S288c]
 gi|392296445|gb|EIW07547.1| Rpo31p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 1460

 Score =  350 bits (898), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 238/731 (32%), Positives = 366/731 (50%), Gaps = 133/731 (18%)

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVN--VLFDGKNAAGQRDMASGICQLLEKKEGLFRQKL 382
            N  +   D  ++ VA ++N   SVN  +L    N  G+     G CQ L+ K+G FR  L
Sbjct: 310  NNMMEHWDYLQLTVAMYIN-SDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNL 368

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
             GKRV+++ R+VISPDP L+++E+ +P   A  LTYPE+VT +N  KL++ I+NG  +HP
Sbjct: 369  SGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHP 428

Query: 443  GATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDV 502
            GA + L +    R       R+ + + L                   G +V RHL+DGDV
Sbjct: 429  GANYLLKRNEDARRNLRYGDRMKLAKNLQI-----------------GDVVERHLEDGDV 471

Query: 503  VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
            VL NRQP+LH+ SI++H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAE
Sbjct: 472  VLFNRQPSLHRLSILSHYAKI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAE 530

Query: 563  AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL 622
            A N++   N  + P +G+P+ +  QD I  + L++ KD+F +R    QLL    + S G+
Sbjct: 531  AINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLL---SMMSDGI 587

Query: 623  GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL--NHITRGRPPFVVER 680
              F   P                 PAI KP  LWTGKQV + ++  NH      P V+  
Sbjct: 588  EHFDIPP-----------------PAIMKPYYLWTGKQVFSLLIKPNH----NSPVVI-- 624

Query: 681  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
                         N D                         K K  V  K         +
Sbjct: 625  -------------NLD------------------------AKNKVFVPPK---------S 638

Query: 741  KSKEKELSEEK--LLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALS 795
            KS   E+S+    ++I  + ++ GV+DK+   D   + + +T+   YG   A   ++ ++
Sbjct: 639  KSLPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMA 698

Query: 796  RLFTVFLQMHGFTCGVDDLLILKDKERERKNHL----HGSEEIGKRVHLEALELEDGAEI 851
            +L   FL   GF+ G++D+    D +++++  +    H  +E+    +   LE + G   
Sbjct: 699  KLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYHKCDELITLFNKGELETQPGCN- 757

Query: 852  DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS- 910
                 + +  +A  GG           + S++ +      INEL           NW + 
Sbjct: 758  -----EEQTLEAKIGG-----------LLSKVREEVGDVCINEL----------DNWNAP 791

Query: 911  -LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDR 969
             +M T G+KGS +N  Q+ + +GQQ + G RVP     ++LP F      P++ GF+ + 
Sbjct: 792  LIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNS 851

Query: 970  FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSI 1029
            F +GL P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR +   I
Sbjct: 852  FFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSANGI 911

Query: 1030 VQFCYGEDGVD 1040
            VQF YG DG+D
Sbjct: 912  VQFTYGGDGLD 922



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 66/103 (64%), Gaps = 4/103 (3%)

Query: 1102 LPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQM 1161
            +PD +K +  +    +  +E + + FL++   K+  +  +PG  +G + +QS+GEP TQM
Sbjct: 1048 VPDNVKTSVSQL---YRISEKSVRKFLEIALFKYRKARLEPGTAIGAIGAQSIGEPGTQM 1104

Query: 1162 TLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            TL TFH AG   MNVTLG+PR++EI+  ASK I TP+I   L+
Sbjct: 1105 TLKTFHFAGVASMNVTLGVPRIKEIIN-ASKVISTPIINAVLV 1146


>gi|410079408|ref|XP_003957285.1| hypothetical protein KAFR_0D05030 [Kazachstania africana CBS 2517]
 gi|372463870|emb|CCF58150.1| hypothetical protein KAFR_0D05030 [Kazachstania africana CBS 2517]
          Length = 1462

 Score =  349 bits (896), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 239/730 (32%), Positives = 365/730 (50%), Gaps = 131/730 (17%)

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVN--VLFDGKNAAGQRDMASGICQLLEKKEGLFRQKL 382
            N  +   D  ++ VA ++N   SVN  +L    +  G+     G CQ L+ K+G FR  L
Sbjct: 311  NNMMEHWDYLQLTVAMYIN-ADSVNPAMLPGASSGGGKVKPIRGFCQRLKGKQGRFRGNL 369

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
             GKRV+++ R+VISPDP L+++E+ +P   A  LTYPE+VT +N  KL++ ++NG  IHP
Sbjct: 370  SGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRKKLQELVMNGPNIHP 429

Query: 443  GATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDV 502
            GA + L K    R       R+ + + L                   G +V RHL+DGDV
Sbjct: 430  GANYLLKKNEEARRNLRYGDRLKLAKNLQY-----------------GDIVERHLEDGDV 472

Query: 503  VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
            VL NRQP+LH+ SI++H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAE
Sbjct: 473  VLFNRQPSLHRLSILSHYAKI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAE 531

Query: 563  AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL 622
            A N++   N  + P +G+P+ +  QD I  + L++ KD+F +R  F QLL    + S G 
Sbjct: 532  AINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATFTQLL---SMMSDGN 588

Query: 623  GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL--NHITRGRPPFVVER 680
              F   P                 PAI KP  LWTGKQ+ + ++  NH    + P V+  
Sbjct: 589  LQFDIPP-----------------PAIMKPYYLWTGKQLFSLLIKPNH----KSPVVI-- 625

Query: 681  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
                                        L   NK++                      K+
Sbjct: 626  ---------------------------NLDAKNKVYI-------------------PPKS 639

Query: 741  KSKEKELSEEK--LLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALS 795
            KS   E+S     ++I  ++++ GV+DK+   D   + + +T+   YG   A   ++ +S
Sbjct: 640  KSLPNEMSRNDGFVIIRGSNILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMS 699

Query: 796  RLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG-----AE 850
            +L   FL   GF+ G+ D+    D + ++       EE+ +  + +  +L D       E
Sbjct: 700  KLCARFLGNRGFSIGISDVTPADDLKIKK-------EELVEIAYAKCDDLIDSYNKGKLE 752

Query: 851  IDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS 910
              P   + E  +A  GG           + S++ +      INEL  + L  P       
Sbjct: 753  TQPGCNEEETLEAKIGG-----------LLSKVREEVGDVCINEL--DNLNAPL------ 793

Query: 911  LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRF 970
            +M T G+KGS +N  Q+ + +GQQ + G RVP     ++LP F      P++ GF+ + F
Sbjct: 794  IMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSF 853

Query: 971  LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIV 1030
             +GL P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR +   IV
Sbjct: 854  FSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGIV 913

Query: 1031 QFCYGEDGVD 1040
            QF YG DG+D
Sbjct: 914  QFTYGGDGLD 923



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 1/84 (1%)

Query: 1121 EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGI 1180
            E A   FL++   K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+
Sbjct: 1065 EKAVLKFLEIALSKYRKARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGV 1124

Query: 1181 PRLQEILTIASKDIKTPVITCPLL 1204
            PR++EI+  ASK I TP+I   L+
Sbjct: 1125 PRIKEIIN-ASKTISTPIINAVLV 1147



 Score = 44.3 bits (103), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TC      C GHFGHI L +PV++   F     +L+ IC  C     S  + +K + +
Sbjct: 67  CETCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQAICKNCSSVLLSDEDKKKYLHE 126

Query: 61  L 61
           L
Sbjct: 127 L 127


>gi|84997133|ref|XP_953288.1| DNA-directed RNA polymerase III largest subunit (RPC homologue)
            [Theileria annulata strain Ankara]
 gi|65304284|emb|CAI76663.1| DNA-directed RNA polymerase III largest subunit (RPC homologue),
            putative [Theileria annulata]
          Length = 1648

 Score =  349 bits (895), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 246/771 (31%), Positives = 380/771 (49%), Gaps = 127/771 (16%)

Query: 298  SKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNA 357
            S G +   E   T + S ++++N  L  +Y+         +  W  +Q       +  + 
Sbjct: 323  SVGEEGTTEDDLTCIFSDIVESNNQL-KSYIKNGAQTNSFIVHWQIIQYQCTRFINSDSP 381

Query: 358  AGQRDMAS--------GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIP 409
            A  + + S        GI Q L+ KEG FR  L GKRV+++ R+VISPDP + ++E+ +P
Sbjct: 382  ALAQLLLSRRVSKPGRGIFQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNVGIDEVVVP 441

Query: 410  PYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRK 469
             + A RLT+PERVT +N+  L+ +I+NG  + PGA++                      K
Sbjct: 442  EWIARRLTFPERVTKYNIHVLKKAILNGVSVWPGASYV--------------------NK 481

Query: 470  LDTSRGAI--VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 527
            LD S+ ++    P   S+N   G +V RHL +GD+V+ NRQP+LH+ SIM H  RV+ G 
Sbjct: 482  LDGSKCSLRFANPKHMSENLQVGDIVERHLWNGDIVIFNRQPSLHRLSIMCHRARVMSGS 541

Query: 528  KTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQ 587
             T R +   C  YNADFDGDEMN+H PQ   +RAEA ++++       P NG+PL + +Q
Sbjct: 542  -TFRFNECVCLPYNADFDGDEMNLHLPQTYEARAEALHLLSVLKNLTTPRNGEPLIAPVQ 600

Query: 588  DHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLP 647
            D + ++ LLT KD FLNR EF Q++            FT           + Q  LP  P
Sbjct: 601  DFLCASYLLTSKDMFLNRSEFSQVI----------SYFTDG---------TIQVDLPP-P 640

Query: 648  AIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKG 707
            +I  P  LWTGKQV + ++                  P +  K   N  +  +R+  D  
Sbjct: 641  SIIHPVTLWTGKQVFSVLIK-----------------PNNKSKVMVNI-RVREREYTDPN 682

Query: 708  KLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL-----------LIYK 756
            +  K   ++KD        +EG   E  +++ + +  K +S  KL           +IYK
Sbjct: 683  QYYKN--LNKDN-------LEGGKVENTKSQTSSNDVKPVSFMKLDDCMCPSDGYVVIYK 733

Query: 757  NDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
            ++L+ G +       +  GL + +        +   +  +S+L + +L   G T G+DD+
Sbjct: 734  SELMCGSLGVRSLGASKGGLFYELMLKNSPKISSECMLRVSKLSSRWLSEFGMTIGLDDV 793

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
               K+   ++K  L                L+  + +D      +  +   G        
Sbjct: 794  TPSKELIDKKKQLL----------------LDGYSRVDEAISNFQFLQPYPGCTREQTLE 837

Query: 875  FDMKMTSQLNKHTSSSVINELLSE------GLLKPTGKNWISLMTTSGAKGSKVNFQQIS 928
              +K           S+++EL +E       LL P  K  I  M  SGAKG+ +N  Q+ 
Sbjct: 838  LQVK-----------SILDELRNESGKICTSLLNPDNKPLI--MFNSGAKGALINIAQMV 884

Query: 929  SHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGRE 988
            + +GQQ + G+R+     G+TLP F       ++ GF+ + F TGL P+E++FH M+GRE
Sbjct: 885  ACVGQQNVSGQRIQNGFIGRTLPHFTMGCKDAKSRGFVANSFFTGLEPEEFFFHTMSGRE 944

Query: 989  GLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            GL+DTAVKTS +GY+QR L+K +E L + YDYSVR +DG IVQF YG+DG+
Sbjct: 945  GLIDTAVKTSETGYMQRRLMKVMEDLSVCYDYSVRTSDGQIVQFLYGDDGL 995



 Score = 89.7 bits (221), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 55/78 (70%), Gaps = 1/78 (1%)

Query: 1126 DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1185
            +F++     +  SL +PGE +G L SQS+GEP+TQMTL TFH AG   MNVTLG+PR+QE
Sbjct: 1279 EFIRYSWKDYQKSLCEPGEAIGALGSQSIGEPATQMTLKTFHFAGVASMNVTLGVPRIQE 1338

Query: 1186 ILTIASKDIKTPVITCPL 1203
            I+  A+  I TP+I  PL
Sbjct: 1339 IIN-ATSLIATPIIEVPL 1355



 Score = 43.9 bits (102), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 29/56 (51%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEK 56
           C+TCG+    C GH+GHI L +PV++   F     +L  IC  C     S   ++K
Sbjct: 148 CETCGKGYNECVGHWGHIKLALPVFHIGFFKYTIQILYCICKKCSSLLLSEESIKK 203


>gi|159040772|ref|YP_001540024.1| DNA-directed RNA polymerase subunit A' [Caldivirga maquilingensis
            IC-167]
 gi|157919607|gb|ABW01034.1| DNA-directed RNA polymerase subunit A' [Caldivirga maquilingensis
            IC-167]
          Length = 889

 Score =  348 bits (894), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 261/825 (31%), Positives = 399/825 (48%), Gaps = 163/825 (19%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFR----LP 297
            L P  +++ +EK+ +++ EL  +     +  +          L V+ VPP + R    LP
Sbjct: 188  LDPVSIREWLEKVPDDDLELLGWNPSTARPEWA--------VLTVLPVPPPQVRPSIQLP 239

Query: 298  SKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNA 357
            S G  S  +   T  L+ +L+ N  L NA +        I+  W +LQ +V    D +  
Sbjct: 240  S-GQTSADD--LTHALTTILRYNEKLRNA-IESGSPTTSILDLWDSLQANVATYIDNELP 295

Query: 358  AG------QRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
             G       +    GI Q L+ KEG FR  L GKRV ++ R+VISPDP L++NE+G+P  
Sbjct: 296  GGIQARHRSKRPLKGIAQRLKGKEGRFRGSLSGKRVEFSARTVISPDPNLSINEVGVPID 355

Query: 412  FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLD 471
             A  LT  E VT WN+  +R  ++NG E  PGA   +        P  KK+ + + R+  
Sbjct: 356  IAKELTVVEPVTEWNIDLMRMLVVNGPETWPGANRVI-------TPDGKKIELKV-RRDR 407

Query: 472  TSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLR 531
            +     +QP         G M+ RHL DGD VL NRQP+LHK S+M H+V+VL G +T R
Sbjct: 408  SELAQQIQP---------GWMIERHLMDGDYVLFNRQPSLHKMSMMCHIVKVLPG-RTFR 457

Query: 532  MHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIV 591
            +H A C  YNADFDGDEMN+H PQ   +RAEA  I+   N  V P  G P+    QD+I 
Sbjct: 458  LHLAVCPPYNADFDGDEMNLHVPQTPEARAEARTIMLVQNFIVTPRYGGPIIGARQDYIS 517

Query: 592  SAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWK 651
               LL++K   L R++   +L              G   + V +           PAI  
Sbjct: 518  GGYLLSRKGNVLTREKALFIL--------------GAVRENVQLEE---------PAIMH 554

Query: 652  PEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ--SDRKKNDKGKL 709
            P  LWTGKQ+I+ +                  LP+DF  T+  + K   SD  + D    
Sbjct: 555  PVELWTGKQIISTL------------------LPKDFNFTQATSFKSTCSDPYRCD---- 592

Query: 710  SKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK--- 766
                                                  ++E +++    L  GV+DK   
Sbjct: 593  --------------------------------------TDEYIVVVNGYLATGVLDKKSI 614

Query: 767  -AQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKD---KER 822
             A+  D  L+H + + YG+      + ++ RL   ++ + GFT  +D L + +D   K  
Sbjct: 615  GAEQVD-SLLHVLVKRYGNEFGRRWIDSMFRLIIRYIDIRGFTMALDSLNLPEDAMKKLD 673

Query: 823  ERKN-HLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTS 881
            E KN ++  + E+  + +  ALE E G  I+                       + K+  
Sbjct: 674  EVKNTYIKEAYELLDKYYKGALEAEPGKTIE--------------------ETLEDKLAE 713

Query: 882  QLNK--HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGK 939
             L+K    +S ++++ +++       ++ + +M  +GA+GS +N  Q+++ LGQQ + G+
Sbjct: 714  TLSKIREEASKIVDDYMNK-------ESEVYIMAKTGARGSLLNAAQMTAALGQQTIRGE 766

Query: 940  RVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSR 999
            R  R  + +TLP F P D  P A GF+   F  GL P EY+FH   GR+GLV+TAV+TS+
Sbjct: 767  RYRRGFTDRTLPHFLPGDKGPEARGFVKSNFRDGLSPIEYFFHAGGGRDGLVETAVRTSQ 826

Query: 1000 SGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT 1044
            SGY QR LI  ++ + ++YD +VRD+  +I+QF YGEDG+DV ++
Sbjct: 827  SGYAQRRLINAMQDIYVAYDGTVRDSQDAIIQFKYGEDGIDVSKS 871



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG     CPGHFG I+LV PV +P     +Y +L+  C  C   K +  E ++   +
Sbjct: 70  CETCGNDWRRCPGHFGRIELVRPVVHPEFVKPIYDILRATCPNCGRLKLTDEEYKRYSER 129

Query: 61  LELIIK 66
           ++ + K
Sbjct: 130 IKRLKK 135


>gi|71029280|ref|XP_764283.1| DNA-directed RNA polymerase III largest subunit [Theileria parva
            strain Muguga]
 gi|68351237|gb|EAN32000.1| DNA-directed RNA polymerase III largest subunit, putative [Theileria
            parva]
          Length = 1617

 Score =  347 bits (891), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 240/779 (30%), Positives = 373/779 (47%), Gaps = 118/779 (15%)

Query: 298  SKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNA 357
            S G +   E   T + S ++++N  L  +Y+         +  W  +Q       +  + 
Sbjct: 315  SVGEEGTTEDDLTCIFSDIVESNNQL-KSYIKNGAQTNSFIVHWQIIQYQCTRFINSDSP 373

Query: 358  AGQRDMAS--------GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIP 409
            A  + + S        GI Q L+ KEG FR  L GKRV+++ R+VISPDP + ++E+ +P
Sbjct: 374  ALAQLLLSRRVSKPGRGIFQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNVGIDEVVVP 433

Query: 410  PYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRK 469
             + A RLT+PERVT +N+  L+ +I+NG  + PGA++                      K
Sbjct: 434  EWIARRLTFPERVTKYNIDVLKKAILNGVSVWPGASYV--------------------NK 473

Query: 470  LDTSRGAI--VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 527
            LD S+ ++    P   S+N   G +V RHL +GD+V+ NRQP+LH+ SIM H  RV+ G 
Sbjct: 474  LDGSKCSLRFANPKHMSENLQVGDIVERHLWNGDIVIFNRQPSLHRLSIMCHRARVMNGS 533

Query: 528  KTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQ 587
             T R +   C  YNADFDGDEMN+H PQ   +RAEA ++++       P NG+PL + +Q
Sbjct: 534  -TFRFNECVCLPYNADFDGDEMNLHLPQTYEARAEALHLLSVLKNLTTPRNGEPLIAPVQ 592

Query: 588  DHIVSAALLTKKDTFLNRDEFCQLL--YSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL 645
            D + ++ LLT KD FLNR EF Q++  ++ G     L                       
Sbjct: 593  DFLCASYLLTNKDMFLNRAEFSQIISYFTDGTIHIDLPP--------------------- 631

Query: 646  LPAIWKPEPLWTGKQVITAVLNHITRGRPPF---VVERGGKLPQDFFKTRFNADKQSDRK 702
             P+I  P  LWTGKQV + ++    + +      V ER    P+ +++   N     D K
Sbjct: 632  -PSIIHPVTLWTGKQVFSVLIKPNNKSKVMVNIRVREREYTDPKQYYEN-LNKKGSEDSK 689

Query: 703  KNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKEL--SEEKLLIYKNDLV 760
             N K                      G P  +         +  +  S+  ++IYK++L+
Sbjct: 690  VNKKS---------------------GNPSNDTNPRSFIKLDDCMCPSDGYVVIYKSELM 728

Query: 761  RGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL---- 814
             G +       +  GL + +        +   +  +S+L + +L   G T G+DD+    
Sbjct: 729  CGSLGVRSLGASKGGLFYELMLKNSPKISSECMLRVSKLSSRWLSEFGMTIGLDDVTPSR 788

Query: 815  -LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVA 873
             LI K K+     +    E I     L+        +   +++KS +++     G    +
Sbjct: 789  ELIDKKKQLLLDGYSRVDEAISNFKFLQPYPGCTREQTLELQVKSILDELRNESGKICTS 848

Query: 874  YFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQ 933
                                      LL P  K  I  M  SGAKG+ +N  Q+ + +GQ
Sbjct: 849  --------------------------LLNPDNKPLI--MFNSGAKGALINIAQMVACVGQ 880

Query: 934  QELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDT 993
            Q + G+R+     G+TLP F       ++ GF+ + F TGL P+E++FH M+GREGL+DT
Sbjct: 881  QNVSGQRIQNGFIGRTLPHFTMGCKDAKSRGFVANSFFTGLEPEEFFFHTMSGREGLIDT 940

Query: 994  AVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDA 1052
            AVKTS +GY+QR L+K +E L + YDYSVR +DG IVQF YG+DG+     S  +  ++
Sbjct: 941  AVKTSETGYMQRRLMKVMEDLSVCYDYSVRTSDGQIVQFLYGDDGLSSSSKSCFTNLNS 999



 Score = 89.7 bits (221), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 55/78 (70%), Gaps = 1/78 (1%)

Query: 1126 DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1185
            +F++     +  SL +PGE +G L SQS+GEP+TQMTL TFH AG   MNVTLG+PR+QE
Sbjct: 1262 EFIRYSWKDYQKSLCEPGEAIGALGSQSIGEPATQMTLKTFHFAGVASMNVTLGVPRIQE 1321

Query: 1186 ILTIASKDIKTPVITCPL 1203
            I+  A+  I TP+I  PL
Sbjct: 1322 IIN-ATSLIATPIIEVPL 1338



 Score = 43.9 bits (102), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 29/56 (51%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEK 56
           C+TCG+    C GH+GHI L +PV++   F     +L  IC  C     S   ++K
Sbjct: 140 CETCGKGYNECVGHWGHIKLALPVFHIGFFKYTIQILYCICKKCSSLLLSEESIKK 195


>gi|120561174|gb|ABM26982.1| RNA polymerase II largest subunit [Vairimorpha cheracis]
          Length = 936

 Score =  347 bits (890), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 254/775 (32%), Positives = 383/775 (49%), Gaps = 127/775 (16%)

Query: 284  LGVVLVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARW 341
            L V+LVPP   R PS   + ++  E   T  LS ++++N YL   Y  +     +I    
Sbjct: 115  LTVLLVPPPAVR-PSIVMEGMLRAEDDLTHKLSDIIKSNTYLKK-YELEGAPGHIIRDYE 172

Query: 342  MNLQQSVNVLFDGKNAAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYACRS 393
              LQ  +  L D  + +GQ        R + S I   L+ KEG  R  LMGKRV+++ RS
Sbjct: 173  QLLQFHIATLID-NDISGQPQALQKSGRPLKS-ISARLKGKEGRVRGNLMGKRVDFSARS 230

Query: 394  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLST 453
            VI+ D  +++ E+G+P   A   T+PE++TP+N  KL   + NG   +PGA +Y+ +   
Sbjct: 231  VITADANISLEEVGVPVEVAKIHTFPEKITPFNAEKLERLVANGPNEYPGA-NYVIRTDG 289

Query: 454  MRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHK 513
             R+             L+ +RG I           EG +V RH+QDGD+VL NRQP+LHK
Sbjct: 290  QRI------------DLNFNRGDIKLE--------EGYVVERHMQDGDIVLFNRQPSLHK 329

Query: 514  PSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQY 573
             S+M H VRV+ G KT R++ +  S YNADFDGDEMN+H PQ   S AE   I     Q 
Sbjct: 330  MSMMGHKVRVMAG-KTFRLNLSVTSPYNADFDGDEMNLHMPQSYNSVAELEEICMVPKQI 388

Query: 574  VRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV---SSSGLGSFTGKPG 630
            + P +  P+  ++QD +      T +D+F ++ E  Q+LYS  +   +  G+ + T + G
Sbjct: 389  LGPQSNKPVMGIVQDTLTGLRFFTMRDSFFDKCEMMQILYSIDLDRYNDIGIDTVT-REG 447

Query: 631  QRVLISRSEQEVLPLL--PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDF 688
            +R+ I   E  +L LL  PAI +P+ LWTGKQ+++ +                   P  F
Sbjct: 448  KRLDIKSKEYSLLRLLETPAIQRPKELWTGKQILSFI------------------FPNVF 489

Query: 689  FKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELS 748
            ++   N   + DR+                                            +S
Sbjct: 490  YQAASNEXVEDDREN-------------------------------------------IS 506

Query: 749  EEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFL-QMH 805
            +  ++I   +++ G+IDK        GLVH +   YGS           ++ T FL  +H
Sbjct: 507  DTAVVICGGEIMSGIIDKKAVGATQGGLVHIIANDYGSRRVTLFFDDTQKIVTKFLMNIH 566

Query: 806  GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMR 865
             F+ G+ D +   D                 RV  EA+E   GA  D I  K++  +  R
Sbjct: 567  VFSMGIGDTVADTDTL--------------TRVR-EAIESAKGAVHDIIH-KAQSNRLER 610

Query: 866  GGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQ 925
              G      F+ ++   LNK    S  +   S         N +  M  SG+KGS +N  
Sbjct: 611  LPGMTMKESFESQVNLVLNKARDVSGTSTQRSLNRC-----NNMKAMVLSGSKGSFINIS 665

Query: 926  QISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMA 985
            Q+++ +GQQ +EGKR+P   + +TLP F   D++ ++ GF+ + +L+GL P+E++FH M 
Sbjct: 666  QVTACVGQQNVEGKRIPFGFAYRTLPHFSKEDYSGKSRGFVENSYLSGLSPEEFFFHAMG 725

Query: 986  GREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            GREGL+DTA+KT+ +GY+QR L+K +E   +  D SVR ADG+I QF YGEDG D
Sbjct: 726  GREGLIDTAIKTAETGYIQRRLVKAMEDATVKADRSVRGADGNIYQFQYGEDGFD 780


>gi|366996196|ref|XP_003677861.1| hypothetical protein NCAS_0H02040 [Naumovozyma castellii CBS 4309]
 gi|342303731|emb|CCC71514.1| hypothetical protein NCAS_0H02040 [Naumovozyma castellii CBS 4309]
          Length = 1460

 Score =  347 bits (890), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 235/725 (32%), Positives = 367/725 (50%), Gaps = 121/725 (16%)

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVN--VLFDGKNAAGQRDMASGICQLLEKKEGLFRQKL 382
            N  +   D  ++ VA ++N   SVN  +L    +  G+     G CQ L+ K+G FR  L
Sbjct: 310  NNMMEHWDYLQLTVAMYIN-SDSVNPAMLPGASSGGGKVKPIRGFCQRLKGKQGRFRGNL 368

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
             GKRV+++ R+VISPDP L+++E+ +P   A  LT+PE+VT +N  KL+  IING  +HP
Sbjct: 369  SGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNKQKLQQLIINGPNVHP 428

Query: 443  GATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDV 502
            GA + L K    R       RI + + L                   G +V RHL+DGDV
Sbjct: 429  GANYLLKKNEDARRNLRYGDRIKLAKNLQ-----------------HGDVVERHLEDGDV 471

Query: 503  VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
            VL NRQP+LH+ SI++H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAE
Sbjct: 472  VLFNRQPSLHRLSILSHFAKI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAE 530

Query: 563  AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL 622
            A N++   N  + P +G+P+ +  QD I  + L++ KD+F +R    QLL    + S+G 
Sbjct: 531  AINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLTQLL---SMMSNGT 587

Query: 623  GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGG 682
              F   P                 PAI KP  +WTGKQV + ++      RP        
Sbjct: 588  LRFDIPP-----------------PAIMKPYYMWTGKQVFSLLI------RP-------- 616

Query: 683  KLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKS 742
                         +K+S    N    L   NK+               P + K+     S
Sbjct: 617  -------------NKESPVVIN----LDAKNKVF-------------MPPKYKDYPNEMS 646

Query: 743  KEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFT 799
            +    ++  ++I  ++++ GV+DK+   D   + + +T+   YG   A   ++ +S+L  
Sbjct: 647  R----NDGYVVIRGSNILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMSKLCA 702

Query: 800  VFLQMHGFTCGVDDLLILKDKERERKNHLHGS----EEIGKRVHLEALELEDGAEIDPIK 855
             +L   GF+ G+ D+    D +++++  +  +    +E+  + H   LE + G       
Sbjct: 703  RYLGNRGFSIGISDVTPADDLKQKKEELVEIAYAKCDELIDQFHKGKLETQPGCN----- 757

Query: 856  LKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTS 915
             + +  +A  GG           + S++ +      INEL  + L  P       +M T 
Sbjct: 758  -EEQTLEAKIGG-----------LLSKVREEVGDVCINEL--DNLNAPL------IMATC 797

Query: 916  GAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLR 975
            G+KGS +N  Q+ + +GQQ + G RVP     ++LP F      P++ GF+ + F +GL 
Sbjct: 798  GSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFQKNSKTPQSKGFVRNSFFSGLT 857

Query: 976  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYG 1035
            P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR +   IVQF YG
Sbjct: 858  PPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGIVQFTYG 917

Query: 1036 EDGVD 1040
             DG+D
Sbjct: 918  GDGLD 922



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 58/84 (69%), Gaps = 1/84 (1%)

Query: 1121 EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGI 1180
            E + Q FL++  +K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+
Sbjct: 1064 EKSVQTFLEIALYKYRKARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGV 1123

Query: 1181 PRLQEILTIASKDIKTPVITCPLL 1204
            PR++EI+  ASK I TP+I   L+
Sbjct: 1124 PRIKEIIN-ASKVISTPIINAVLV 1146



 Score = 42.0 bits (97), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 24/44 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      C GHFGHI L +PV++   F     +L+ +C  C
Sbjct: 67  CETCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQGVCKTC 110


>gi|302308245|ref|NP_985109.2| AER252Cp [Ashbya gossypii ATCC 10895]
 gi|299789362|gb|AAS52933.2| AER252Cp [Ashbya gossypii ATCC 10895]
 gi|374108334|gb|AEY97241.1| FAER252Cp [Ashbya gossypii FDAG1]
          Length = 1459

 Score =  347 bits (889), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 233/726 (32%), Positives = 360/726 (49%), Gaps = 124/726 (17%)

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVN-VLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLM 383
            N  + Q D  ++ VA ++N   SVN  L  G N  G+     G CQ L+ K+G FR  L 
Sbjct: 310  NNMMEQWDYLQMAVAMYIN-SDSVNPALMPGGNGGGKTKPIRGFCQRLKGKQGRFRGNLS 368

Query: 384  GKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPG 443
            GKRV+++ R+VISPDP L+++E+ +P   A  LT+PE+VT +N  KL+  I+NGA +HPG
Sbjct: 369  GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNKHKLQQLIVNGANVHPG 428

Query: 444  ATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVV 503
            A + L K    R       RI + + L                   G +V RHL+DGDVV
Sbjct: 429  ANYLLKKNEEARRNLRYGDRIKLAKNLQI-----------------GDVVERHLEDGDVV 471

Query: 504  LVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEA 563
            L NRQP+LH+ SI++H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA
Sbjct: 472  LFNRQPSLHRLSILSHYAKI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEA 530

Query: 564  YNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLG 623
             N++   N  + P +G+P+ +  QD I  + L++ KD+F +R  F Q+L    + S G  
Sbjct: 531  INLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATFVQML---SMMSDGNL 587

Query: 624  SFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGK 683
             F   P                 PAI +P  LWTGKQ+ + ++      + P ++     
Sbjct: 588  QFDIPP-----------------PAIMRPHYLWTGKQLFSLLIK--PNKKSPVII----- 623

Query: 684  LPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSK 743
                                     L   NK++                    A KNK+ 
Sbjct: 624  ------------------------NLDAKNKVYI-------------------APKNKAY 640

Query: 744  EKELSEEK--LLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLF 798
              E+S     ++I  ++++ GV+DK+   D   + + +T+   +G   A   ++ +++L 
Sbjct: 641  PNEMSANDGYVVIRGSNILSGVMDKSVLGDGKKHSVFYTILRDFGPQEATQAMNRMAKLC 700

Query: 799  TVFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
              +L   GF+ G+ D+     +   KE   +      +E+        LE + G      
Sbjct: 701  ARYLGNRGFSIGISDVTPGVELKATKEEMVEIAYAKCDELIDLYKRGKLETQPGCN---- 756

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
              + +  +A  GG           + S++ +      I EL  + L  P       +M T
Sbjct: 757  --EEQTLEAKIGG-----------LLSKVREEVGDVCIREL--DNLNAPL------IMAT 795

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
             G+KGS +N  Q+ + +GQQ + G RVP     ++LP F      P++ GF+ + F +GL
Sbjct: 796  CGSKGSNLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGL 855

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
             P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR +   IVQF Y
Sbjct: 856  SPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGIVQFTY 915

Query: 1035 GEDGVD 1040
            G DG+D
Sbjct: 916  GGDGLD 921



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 52/78 (66%), Gaps = 1/78 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            FL +   K+  +  +PG  VG + + S+GEP TQMTL TFH AG   MNVTLG+PR++EI
Sbjct: 1069 FLDIAISKYRKAKVEPGTAVGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI 1128

Query: 1187 LTIASKDIKTPVITCPLL 1204
            +  ASK I TP+I   L+
Sbjct: 1129 IN-ASKVISTPIINATLV 1145



 Score = 42.0 bits (97), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 23/44 (52%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC      C GHFGHI L +PV++   F     +L+ IC  C
Sbjct: 67  CSTCHGTLASCHGHFGHIKLALPVFHVGYFKATIQILQSICKNC 110


>gi|399218552|emb|CCF75439.1| unnamed protein product [Babesia microti strain RI]
          Length = 1459

 Score =  347 bits (889), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 241/730 (33%), Positives = 367/730 (50%), Gaps = 124/730 (16%)

Query: 320  NIYLANAYVNQPDNAKVIVARWMNLQQ-SVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
            N +  N ++      ++   R++N +  +V+ L   KN       + GICQ L+ KEG F
Sbjct: 272  NGFQTNQFIGNWQFMQLQCTRYINSESPAVSQLLATKNITKS---SRGICQRLKGKEGRF 328

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R  L GKRV+++ R+VISPDP + ++++ +P Y A RLTYPERV   N+  L+ +++NG 
Sbjct: 329  RGNLSGKRVDFSARTVISPDPNVGIDQVVVPKYIAQRLTYPERVNTTNINILKRAVLNGP 388

Query: 439  EIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQ 498
            +  PGA  Y++KL               G K +        P   S+    G +V RH+ 
Sbjct: 389  DSWPGAC-YVNKLD--------------GSKCNLRYA---NPKNVSERLAVGDIVERHIW 430

Query: 499  DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
            DGD+VL NRQP+LH+ SIMAH   V++G  TLR +   CS YNADFDGDEMN+HFPQ E 
Sbjct: 431  DGDIVLFNRQPSLHRMSIMAHRAIVMQGS-TLRFNECVCSPYNADFDGDEMNLHFPQTEE 489

Query: 559  SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
            +RAEA++++   N    P NG+PL + +QD + ++ LLT KD FL++ +   L  S    
Sbjct: 490  ARAEAFHLMGVLNNLTSPKNGEPLVAAVQDFLSASYLLTSKDYFLDKKKIFNLCCS---F 546

Query: 619  SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVV 678
              G+      P                 PAI  P  LWTGKQV + +L+   + R    +
Sbjct: 547  CDGIEHIDVPP-----------------PAIIYPIQLWTGKQVFSLLLSPNRKDRTYINL 589

Query: 679  ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 738
            E          K R                                   E KP +   + 
Sbjct: 590  E---------LKER-----------------------------------EFKPYKSNTSV 605

Query: 739  KNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSR 796
               S     S+  +++  ++L+ G + K        GL+  +    GS +    LS +S+
Sbjct: 606  YGNSDVMSPSDGYVVVSNSELMCGSVGKNTLGPGKSGLIFHLLRNQGSKSTSKFLSRISK 665

Query: 797  LFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKL 856
            L   +L  +G + G+DD++               S E+   +  + + L +G +    K+
Sbjct: 666  LTCRWLCEYGLSIGIDDVI--------------PSHEL---ILEKGVVLNNGYK----KV 704

Query: 857  KSEIEKAMRGG-----GDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWI 909
              EIEK  RG      G +A    ++ +  +L+  ++ +  V  E L      P  K  I
Sbjct: 705  DHEIEKYNRGEIQAKFGCSAQETLELIIKGELDDLRNQAGKVCYEHLP-----PQNKPLI 759

Query: 910  SLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDR 969
              M  SGAKGS +N  Q+ + +GQQ + G+R+      ++LP F      P++ GF+ + 
Sbjct: 760  --MFNSGAKGSLINIAQMIACVGQQNVSGQRIQNGFVNRSLPHFEMDSLEPKSRGFVANS 817

Query: 970  FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSI 1029
            F TGL PQE++FH M+GREGL+DTAVKT+ +GY+QR L+K LE L + YD++VR +DG +
Sbjct: 818  FFTGLDPQEFFFHTMSGREGLIDTAVKTAETGYMQRRLMKALEDLSVCYDHTVRTSDGQV 877

Query: 1030 VQFCYGEDGV 1039
            VQF YG+DG+
Sbjct: 878  VQFLYGDDGI 887



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 54/70 (77%), Gaps = 1/70 (1%)

Query: 1138 SLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTP 1197
            ++A+PG+ VG L +QS+GEP TQMTL TFH AG   MNVTLG+PR++EI+  A+ +I+TP
Sbjct: 1120 AIAEPGDAVGALGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-ATANIQTP 1178

Query: 1198 VITCPLLVGK 1207
            +I  PL+  K
Sbjct: 1179 IIEVPLVSSK 1188



 Score = 41.2 bits (95), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           CKTC      C GH+G+IDL +PV++   F     +L  IC  C +   S   +++   K
Sbjct: 67  CKTCNLGLTECLGHWGYIDLHLPVFHIGFFKYTIQILSCICKKCSYLLISEDNMKR--FK 124

Query: 61  LELIIKGDIIAAKSLDLDLPSE 82
            + +I  D +A K L   L +E
Sbjct: 125 DQALITTDPLAKKILFKRLVAE 146


>gi|347522775|ref|YP_004780345.1| DNA-directed RNA polymerase subunit A' [Pyrolobus fumarii 1A]
 gi|343459657|gb|AEM38093.1| DNA-directed RNA polymerase subunit A' [Pyrolobus fumarii 1A]
          Length = 882

 Score =  346 bits (888), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 261/831 (31%), Positives = 403/831 (48%), Gaps = 146/831 (17%)

Query: 231  FKKQKDLFSG--PLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVL 288
            +K  +D  +G  PL P +V+  +EK+ +++ +L             K+A      L V+ 
Sbjct: 163  YKYYEDRPAGRVPLNPREVRSRLEKIPDDDVKLLGLDP--------KEARPEWMVLTVLP 214

Query: 289  VPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQ 346
            VPPI  R PS   ++ +  E   T  L+ +++ N  L     +   ++ VI   W  LQ 
Sbjct: 215  VPPIHVR-PSIVLETGIRAEDDLTHKLADIVRTNEKLRETLESGMPHS-VIDEWWNLLQY 272

Query: 347  SVNVLFD--------GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
             V    D         +   G      G+ Q L+ KEG FR  L GKRVN++ R+VISPD
Sbjct: 273  HVATYIDNELPKIPVARQRGGLGRPLKGLAQRLKGKEGRFRGNLSGKRVNFSARTVISPD 332

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP 458
            P +++NE+G+P   A  LT   RVTPWN+ +LR  +ING +  PGA + +D       P 
Sbjct: 333  PNISINEVGVPIEIAKILTVAVRVTPWNIEELRKYVINGPDKWPGANYVID-------PR 385

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
             +K+ +    +   S    +QP         G +V RHL+DGD+VL NRQP+LH+ SIMA
Sbjct: 386  GRKIDLRFADR--KSIAEALQP---------GWIVERHLKDGDIVLFNRQPSLHRMSIMA 434

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H+VRVL G KT R++   C  YNADFDGDEMN+H P+ E ++AEA  ++      + P  
Sbjct: 435  HIVRVLPG-KTFRLNLLVCPPYNADFDGDEMNLHVPRTEEAQAEARELMLVQFHILTPRY 493

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            G  +   +QD+I  A LLT K T L  D+   LL +                     ++ 
Sbjct: 494  GGVIIGGLQDYISGAYLLTSKATILTLDDVVDLLAA---------------------AKY 532

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDF-FKTRFNADK 697
            E E+    P I  P+ LWTGKQ+++                    LP+DF F+       
Sbjct: 533  EGEIPE--PVILSPKKLWTGKQLVSLF------------------LPKDFTFR------- 565

Query: 698  QSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN 757
               + K   G  + ++++  + S                               ++I   
Sbjct: 566  --GKAKISSGAFACSDELCWNDS------------------------------YIVIKNG 593

Query: 758  DLVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
            +L+ GV DK          ++H + + YG +    L+  L ++F  +++ HGFT  ++D+
Sbjct: 594  ELLEGVFDKKAIGAEQTESVLHQLTKEYGFDYVRRLMDTLFKMFLRYIEKHGFTMTLEDV 653

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
             +  + +   +  L  +E   K+V  E +E      ++P+             G      
Sbjct: 654  ALPPEAKEHIREILKEAE---KKVQ-ELIEQYREGRLEPVP------------GRTLEET 697

Query: 875  FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
             ++K+   L   T +    E     +L P   N + +M  +GA+G+++N  Q+++ LGQQ
Sbjct: 698  LELKIIEAL---TDARRKIEQYVADVLDPF--NNVFIMARTGARGNELNITQMAAILGQQ 752

Query: 935  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
             + G+R+ R   G+ LP F P D  P A GF+   F  GL P E +FH   GREGLVDTA
Sbjct: 753  TVRGERISRGYRGRYLPHFKPGDLGPAARGFVYHGFYDGLTPTEVFFHAAGGREGLVDTA 812

Query: 995  VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTS 1045
            V+TS+SGY+QR LI  L+ L++ YD +VR  DG++VQ  YGEDGVD  +++
Sbjct: 813  VRTSQSGYMQRRLINALQDLRVEYDGTVRLPDGTLVQIKYGEDGVDPMKSA 863



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 42/75 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG    LCPGHFG I+L +PV N      +Y +L+  C  C   K   RE+++ ++ 
Sbjct: 59  CETCGNDYRLCPGHFGRIELALPVINVGFARHIYEILRATCRNCGRIKLPERELKRYLKL 118

Query: 61  LELIIKGDIIAAKSL 75
           LE +     + AK+L
Sbjct: 119 LERLKNKWPLLAKAL 133


>gi|328867419|gb|EGG15801.1| RNA polymerase II largest subunit [Dictyostelium fasciculatum]
          Length = 1701

 Score =  346 bits (887), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 214/680 (31%), Positives = 340/680 (50%), Gaps = 129/680 (18%)

Query: 366  GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPW 425
             I Q L+ KEG  R  LMGKRV+++ R+VI+ DP L+++++G+P   AL LTYPE VTP+
Sbjct: 301  SIRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPF 360

Query: 426  NVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSD 485
            N+ ++R+ I  G + HPGA + +                    + D  R  +    K +D
Sbjct: 361  NIDRMRELIRRGPDEHPGAKYVI--------------------REDGQRFDLRFVKKLTD 400

Query: 486  NEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADF 544
               E G  V RH+QDGDVV+ NRQP+LHK S+M H ++V+    T R++ +  + YNADF
Sbjct: 401  THLEVGYKVERHVQDGDVVIFNRQPSLHKMSMMGHRIKVMP-YSTFRLNLSVTTPYNADF 459

Query: 545  DGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLN 604
            DGDEMN+H PQ   +RAE   I+    Q V P +  P+  ++QD ++ + L TK+DTF+ 
Sbjct: 460  DGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDSLLGSRLFTKRDTFIE 519

Query: 605  RDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITA 664
            RD    +L         L S+ GK             + P  PAIWKP+ LWTGKQ+ + 
Sbjct: 520  RDLMMNILM-------WLPSWDGK-------------IPP--PAIWKPKKLWTGKQIFSL 557

Query: 665  VLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKK 724
            ++  I                                       L++    H DK  +K 
Sbjct: 558  IIPKI--------------------------------------NLTRFTSTHNDKEKEKS 579

Query: 725  EVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELY 782
            E+                     S+  ++I + +L+ G++ K     A+  ++H VQ  +
Sbjct: 580  EMA--------------------SDTVVIIDQGELMSGILCKRSLGSANGSIIHVVQNEH 619

Query: 783  GSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEA 842
            G       +     +   +L  HGFT G+ D +       + +N +  ++          
Sbjct: 620  GHEATRCFIDQTQTVVNSWLISHGFTVGIGDTIADSATMAKVQNAITSAK---------- 669

Query: 843  LELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGL 900
                   ++  + +K++  +     G + +  F+ ++   LN  +  + +   + L E  
Sbjct: 670  ------TQVKELIIKAQSNQFECQPGKSMLESFEKEVNRVLNTARDDAGTSAQKSLQES- 722

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
                  N +  M  +G+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F   D+ P
Sbjct: 723  ------NNVKAMVNAGSKGSFINISQMMACVGQQNVEGKRIPFGFQNRTLPHFTKDDYGP 776

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
             + GF+ + +L GL PQE++FH M GREGL+DTAVKTS +GY+QR L+K +E + + YD 
Sbjct: 777  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVSVRYDA 836

Query: 1021 SVRDADGSIVQFCYGEDGVD 1040
            +VR++ G ++QF YGEDG+D
Sbjct: 837  TVRNSLGDVIQFAYGEDGLD 856



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/73 (63%), Positives = 58/73 (79%), Gaps = 1/73 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            V+ KF+ SLA PGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ +A
Sbjct: 1048 VESKFMTSLANPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVA 1107

Query: 1191 SKDIKTPVITCPL 1203
             K++KTP +T  L
Sbjct: 1108 -KNVKTPSLTIYL 1119



 Score = 47.8 bits (112), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 1  CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
          C TC      CPGHFGH++L  PV++    + +  +++ +CF C
Sbjct: 36 CATCSGTMAECPGHFGHLELAKPVFHIGFIDTVLKIVRCVCFHC 79


>gi|428180807|gb|EKX49673.1| Rpb1, RNA polymerase II largest subunit [Guillardia theta CCMP2712]
          Length = 1473

 Score =  346 bits (887), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 275/908 (30%), Positives = 430/908 (47%), Gaps = 197/908 (21%)

Query: 369  QLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVV 428
            Q ++ KEG  R  LMGKRV+++ R+VI+ DP ++ +++G+P   A  +T+PE V+  N+ 
Sbjct: 331  QRIKGKEGRVRGNLMGKRVDFSARTVITGDPTISCDQVGVPRSIAYNMTFPEIVSIHNIE 390

Query: 429  KLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEF 488
             +R+ ++NG + HPGA               K +  S G+++D      V+   D   ++
Sbjct: 391  NMRNLVMNGPDQHPGA---------------KSIVRSDGKRVDLR---FVKMQSDQILDY 432

Query: 489  EGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 548
             G +V R +QD D V+ NRQP+LHK S+M H V+++    T R++ +  S YNADFDGDE
Sbjct: 433  -GYIVERQMQDDDCVIFNRQPSLHKMSMMGHRVKIMP-YSTFRLNLSVTSPYNADFDGDE 490

Query: 549  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
            MN+H PQ   +++E YNI+    Q V P    P+  ++QD ++  ++LT+++TF+ +D  
Sbjct: 491  MNLHLPQSYETKSEIYNIMMVPFQIVSPQKNAPVMGIVQDTLLGCSVLTRRNTFVEKDLM 550

Query: 609  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPE----PLWTGKQVITA 664
              +L         +  F G+              +P +PAI K      PLWTGKQV++ 
Sbjct: 551  MNVLMH-------VPGFDGR--------------VP-IPAIVKAPNNKGPLWTGKQVLSL 588

Query: 665  VLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKK 724
             +                                  R+ N    LSK N+   D      
Sbjct: 589  AI--------------------------------PSRRIN----LSKLNQYKTD------ 606

Query: 725  EVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKA--QFADYGLVHTVQELY 782
                     E   +  K +   +++  ++I   +++ G +D +  + +  GLVH      
Sbjct: 607  ---------EDTGDVFK-QTMTINDAHIVIEDGEILTGSVDSSVIKTSQGGLVHMCWADL 656

Query: 783  GSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEA 842
            G   A  LL+    +   +L  +G++ GV D++               S E  K +    
Sbjct: 657  GPAGARDLLNNTQIIVNHWLLQNGWSVGVSDIV--------------ASAETIKAI---- 698

Query: 843  LELEDGAEIDPIK--LKSEIEKAMRGG-----GDAAVAYFDMKMTSQLNKHTS--SSVIN 893
                 GA ID  K  ++  +E+  +G      G      F+M++ S+LN   S  S+++ 
Sbjct: 699  -----GASIDAAKKDVQGFVEQWQQGSLKKQPGCTMHQVFEMQVNSRLNNALSDGSNIVQ 753

Query: 894  ELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSF 953
              +   L      N I+ M  SG+KG+ +N  QI + +GQQ +E  R+P     +TLP F
Sbjct: 754  RGIKFAL------NRINEMRKSGSKGTDINLCQIIALVGQQNIENCRIPYGFKRRTLPHF 807

Query: 954  HPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLEC 1013
               D    + GF+ + +  GL PQE YFH M GREGL+DTAVKTS +GY+QR LIK LE 
Sbjct: 808  RKDDPGAESRGFVENSYTQGLTPQELYFHAMGGREGLIDTAVKTSETGYIQRRLIKALED 867

Query: 1014 LKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSH 1073
            + + YD +VR++ GS++QF YGEDG+D   T  +S+        + + R  N F D    
Sbjct: 868  VVVRYDGTVRNSLGSVIQFAYGEDGLDA--TFLLSQKPPTLEMRKAQLRD-NYFIDLDKP 924

Query: 1074 TFVMGRNQEMIYKKCSGQL--------------------------DASNAYIMELPDALK 1107
              +       I  + +G L                          D+S   + +L + LK
Sbjct: 925  ESIKNYVHSDIRSQIAGDLEVRDRLKKEYEQIETDQEELRSKIFADSSLEGVRDLSERLK 984

Query: 1108 ---------------DNAEKFADKFLSNEMA-----------KQDF---LKLVKHKFVLS 1138
                           +NA    +  L ++ A           K+ F   L  V+ KF  +
Sbjct: 985  VALFPGEDNISIEARNNATHLFNIILRSQFAVKKVMAGHRLNKKAFDWILGEVESKFRRA 1044

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
            +  PGE VG +ASQS+GEP TQMTLNTFH AG      T G+PR++E++ IA K+IK P 
Sbjct: 1045 IVNPGESVGCIASQSLGEPVTQMTLNTFHFAGVSAKKGTKGVPRMKELINIA-KNIKAPG 1103

Query: 1199 ITCPLLVG 1206
            I+  L  G
Sbjct: 1104 ISIYLKEG 1111



 Score = 49.3 bits (116), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 27/54 (50%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREV 54
           C TC      CPGHFGHI+L  PVY+     +L  +L  +C  C       R++
Sbjct: 72  CATCHGSDETCPGHFGHINLAEPVYHCGFLTMLQKILGCVCHQCGMLMVDERDI 125


>gi|190347890|gb|EDK40245.2| DNA-directed RNA polymerase III largest subunit [Meyerozyma
            guilliermondii ATCC 6260]
          Length = 1379

 Score =  345 bits (886), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 237/767 (30%), Positives = 378/767 (49%), Gaps = 125/767 (16%)

Query: 286  VVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANI---YLANAYVNQPDNAKVIVARWM 342
            V + P +     S   D  ++  + V  S +++A I      N  + Q D  ++ VA ++
Sbjct: 195  VCIRPSVMMDAQSNEDDITVKLTEIVWTSSLIKAGIEKGISINNLMEQWDYLQLSVAMYI 254

Query: 343  NLQQSVNVLFDGKNAAGQRDM-ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYL 401
            N   +   L    +   +      G CQ L+ K+G FR  L GKRV+++ R+VISPDP L
Sbjct: 255  NSDAANPALLPSMSGGAKSAKPIRGFCQRLKGKQGRFRGNLSGKRVDFSARTVISPDPNL 314

Query: 402  AVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKK 461
             ++E+ +P   A  LTYPE+ T +N  KL+  I+NG ++HPGA +       M+     K
Sbjct: 315  RIDEVAVPDRVAKVLTYPEKCTRYNRKKLQQLILNGPDVHPGANY------VMKQNEAAK 368

Query: 462  MRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVV 521
              +  G K+  ++           N   G +V RH++DGDVVL NRQP+LH+ SI++H  
Sbjct: 369  RNLRFGDKVKLAK-----------NLHVGDVVERHIEDGDVVLFNRQPSLHRLSILSHYA 417

Query: 522  RVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDP 581
            ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA N++   N  + P +G+P
Sbjct: 418  KI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEP 476

Query: 582  LRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQE 641
            + +  QD I  + L++ KD+F +R  F QLL  S +S + L  F   P            
Sbjct: 477  IIAATQDFITGSYLISHKDSFYDRATFIQLL--SMMSDADL-QFDLPP------------ 521

Query: 642  VLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDR 701
                 P I+KP  LWTGKQV + ++                                   
Sbjct: 522  -----PTIFKPVMLWTGKQVFSLLM----------------------------------- 541

Query: 702  KKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVR 761
                  K +K + +  +   K K      PG   E   N        +  ++I  + ++ 
Sbjct: 542  ------KPNKNSNVIVNLDAKNKAFTPPAPGYPNEMSPN--------DGYVIIRGSQVLS 587

Query: 762  GVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILK 818
            GV+DK+   D   + + +T+   +G + A   ++ +++L   +L   GF+ G++D+    
Sbjct: 588  GVMDKSTLGDGKKHSVFYTILRDFGPDAAAEAMNRMAKLCARYLGNRGFSIGINDVTPGT 647

Query: 819  DKERERKNHLHGSEEIGKRVHLEALELED-----GAEIDPIKLKSEIEKAMRGGGDAAVA 873
            D +R++       E + ++ +L+  EL D       E  P   + +  +A  GG      
Sbjct: 648  DLKRKK-------ELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGG------ 694

Query: 874  YFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQ 933
                 + S++ +      INEL S         N   +M T G+KGS +N  Q+ + +GQ
Sbjct: 695  -----LLSKVREQVGEVCINELDS--------ANAPLIMATCGSKGSTLNVSQMVAVVGQ 741

Query: 934  QELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDT 993
            Q + G RVP     ++LP F      P++ GF+ + F +GL P E+ FH ++GREGLVDT
Sbjct: 742  QIISGNRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDT 801

Query: 994  AVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            AVKT+ +GY+ R L+K+LE L   YD +VR++   IVQF YG DG+D
Sbjct: 802  AVKTAETGYMSRRLMKSLEDLSAQYDNTVRNSSNGIVQFTYGGDGLD 848



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 54/82 (65%), Gaps = 1/82 (1%)

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
            A   FL    +K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR
Sbjct: 983  AINKFLDQCIYKYSRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPR 1042

Query: 1183 LQEILTIASKDIKTPVITCPLL 1204
            ++EI+  ASK I TP+I   L+
Sbjct: 1043 IKEIIN-ASKVISTPIINGVLV 1063


>gi|320581578|gb|EFW95798.1| DNA-directed RNA polymerase III subunit, putative [Ogataea
            parapolymorpha DL-1]
          Length = 1469

 Score =  345 bits (886), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 232/747 (31%), Positives = 370/747 (49%), Gaps = 118/747 (15%)

Query: 302  DSVMEHPQTVLLSKVLQANI---YLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAA 358
            D  ++  + V  S +++A I      N+ + Q D  ++ VA ++N   +      G  + 
Sbjct: 283  DLTVKLTEIVWTSSMIRAGIEKGISINSLMEQWDYLQLAVAMYINSDSASPSALSGGTST 342

Query: 359  GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTY 418
                   G+CQ L+ K+G FR  L GKRV+++ R+VISPDP L ++E+ +P   A  LTY
Sbjct: 343  KSAKPIRGLCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPDRVAKVLTY 402

Query: 419  PERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIV 478
            PERVT +N  KL+  IING ++HPGA + + K   ++       R  + ++L        
Sbjct: 403  PERVTRYNKAKLQALIINGPDVHPGANYLVKKHEDVKRNLRYGDRNKLAKQLAV------ 456

Query: 479  QPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS 538
                       G +V RH++DGD+VL NRQP+LH+ SIM+H  ++ +  +T R++   C+
Sbjct: 457  -----------GDIVERHIEDGDIVLFNRQPSLHRLSIMSHFAKI-RPWRTFRLNECVCT 504

Query: 539  TYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTK 598
             YNADFDGDEMN+H PQ E +RAEA N++   N  + P +G+P+ +  QD I  + L++ 
Sbjct: 505  PYNADFDGDEMNLHVPQTEEARAEAMNLMGVKNNLLTPKSGEPIIAATQDFITGSYLISN 564

Query: 599  KDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTG 658
            KD+F +R  F Q+L    + S G       P                 PAI+KP  +WTG
Sbjct: 565  KDSFYDRATFTQML---AMMSDGALHVDIPP-----------------PAIFKPAFMWTG 604

Query: 659  KQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKD 718
            KQ+ + ++      RP                                   ++ +K+  +
Sbjct: 605  KQLFSLLI------RP-----------------------------------NRQSKVVIN 623

Query: 719  KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLV 775
               K K  V   PG   E   N        +  ++I  + ++ GV+DK+   D   + + 
Sbjct: 624  LDAKNKTFVPPPPGMPSEMSPN--------DGFVVIRNSQILSGVMDKSTLGDGKKHSVF 675

Query: 776  HTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIG 835
            +T+   YG++ A   ++ +++L   +L   GF+ G++D +   +  + RK  L    EI 
Sbjct: 676  YTILRDYGADEAANAMNRMAKLCARYLGNRGFSIGIND-VTPGENLKNRKEQL---VEIA 731

Query: 836  KRVHLEALEL--EDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVIN 893
             R   E + L      E  P   + +  +A  GG           + S++ +      I 
Sbjct: 732  YRKCDELITLFKTGKLETQPGCNEEQTLEAKIGG-----------LLSKVREEVGEVCIK 780

Query: 894  ELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSF 953
            EL           N   +M T G+KGS +N  Q+ + +GQQ + G RVP     ++LP F
Sbjct: 781  EL--------DKSNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHF 832

Query: 954  HPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLEC 1013
                 +P++ GF+ + F +GL P E+ FH ++GREGLVDTAVKT+ +GY  R L+K++E 
Sbjct: 833  LKNSKSPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYTSRRLMKSMED 892

Query: 1014 LKISYDYSVRDADGSIVQFCYGEDGVD 1040
            L   YD +VR++   IVQF YG DG+D
Sbjct: 893  LSAGYDETVRNSSNGIVQFNYGGDGLD 919



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 59/85 (69%), Gaps = 1/85 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            +E   ++FL+L  HK++ +  +PG  VG + + S+GEP TQMTL TFH AG   MNVTLG
Sbjct: 1059 SESMIREFLRLCLHKYLKAKVEPGTAVGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLG 1118

Query: 1180 IPRLQEILTIASKDIKTPVITCPLL 1204
            +PR++EI+  ASK I TP+I   L+
Sbjct: 1119 VPRIKEIIN-ASKVISTPIINAVLV 1142



 Score = 44.3 bits (103), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C TC      C GHFGHI L +PV++   F  +  +L+ IC  C      +AS+R+    
Sbjct: 67  CATCHGNLNTCHGHFGHIKLALPVFHVGYFKSIIQVLQTICKTCSAVLLDEASKRQFLND 126

Query: 58  VRK 60
           +R+
Sbjct: 127 LRR 129


>gi|330795314|ref|XP_003285719.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
 gi|325084350|gb|EGC37780.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
          Length = 1755

 Score =  345 bits (885), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 223/679 (32%), Positives = 340/679 (50%), Gaps = 130/679 (19%)

Query: 367  ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
            I Q L+ KEG  R  LMGKRV+++ R+VI+ DP L+++++G+P   AL LTYPE VTP+N
Sbjct: 331  IRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFN 390

Query: 427  VVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN 486
            + K+R+ I NG   HPGA + +                    + D +R  +    K SD 
Sbjct: 391  IDKMRELIRNGPNEHPGAKYII--------------------REDGTRFDLRFVKKVSDT 430

Query: 487  EFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
              E G  V RH+ DGDVV+ NRQP+LHK S+M H ++V+    T R++ +  S YNADFD
Sbjct: 431  HLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMP-YSTFRLNLSVTSPYNADFD 489

Query: 546  GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
            GDEMN+H PQ   +RAE   I+    Q V P +  P+  ++QD ++ + L TK+DTF+ R
Sbjct: 490  GDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDTFIER 549

Query: 606  DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
            D    +L         L S+ GK             V P  PAI KP+ LWTGKQ+ + +
Sbjct: 550  DLVMNILM-------WLPSWDGK-------------VPP--PAILKPKQLWTGKQLFSLI 587

Query: 666  LNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKE 725
            +  I                                       L +    H DK      
Sbjct: 588  IPDI--------------------------------------NLIRFTSTHNDK------ 603

Query: 726  VVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYG 783
                           +  E    + +++I + +L+ G++ K     A+  ++H V   +G
Sbjct: 604  ---------------EPNECSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHG 648

Query: 784  SNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL 843
             +T    +     +   +L   GFT G+ D +                 +  ++V L   
Sbjct: 649  HDTCRLFIDQTQTVVNHWLINRGFTMGIGDTI--------------ADAQTMEKVTLTIS 694

Query: 844  ELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNK--HTSSSVINELLSEGLL 901
              ++  ++  + +K++ ++     G + +  F+ K+   LNK   T+ S     LSE   
Sbjct: 695  SAKN--QVKELIIKAQNKQFECQPGKSVMETFEQKVNQVLNKARDTAGSSAQNSLSEA-- 750

Query: 902  KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 961
                 N +  M T+G+KGS +N  Q+ + +GQQ +EGKRVP     +TLP F   D+ P 
Sbjct: 751  -----NNLKAMVTAGSKGSFINISQMMACVGQQNVEGKRVPFGFQSRTLPHFTKDDYGPE 805

Query: 962  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1021
            + GF+ + +L GL PQE++FH M GREGL+DTAVKTS +GY+QR L+K +E + I YD +
Sbjct: 806  SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDAT 865

Query: 1022 VRDADGSIVQFCYGEDGVD 1040
            VR++ G ++QF YGEDG+D
Sbjct: 866  VRNSLGDVIQFAYGEDGID 884



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 57/73 (78%), Gaps = 1/73 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ KF+ +LA PGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ IA
Sbjct: 1069 IESKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIA 1128

Query: 1191 SKDIKTPVITCPL 1203
             K +KTP +T  L
Sbjct: 1129 -KQVKTPSLTIYL 1140



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++    + +  +L+ +CF C
Sbjct: 66  CQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCFHC 109


>gi|50309797|ref|XP_454912.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644047|emb|CAG99999.1| KLLA0E21253p [Kluyveromyces lactis]
          Length = 1457

 Score =  345 bits (884), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 231/723 (31%), Positives = 366/723 (50%), Gaps = 119/723 (16%)

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMG 384
            N  + Q D  ++ VA ++N   SVN      ++  +     G CQ L+ K+G FR  L G
Sbjct: 310  NNMMEQWDYLQLAVAMYIN-SDSVNPSMLPGSSGTKSKPIRGFCQRLKGKQGRFRGNLSG 368

Query: 385  KRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGA 444
            KRV+++ R+VISPDP L+++E+ +P   A  LTYPE+VT +N  KL+  +ING ++HPGA
Sbjct: 369  KRVDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKVHPGA 428

Query: 445  THYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVL 504
             + L K    R       R+ + ++L                   G +V RH++DGDVVL
Sbjct: 429  NYLLKKNEDARRNLRYGDRVKLAKQLQY-----------------GDVVERHIEDGDVVL 471

Query: 505  VNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAY 564
             NRQP+LH+ SI++H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA 
Sbjct: 472  FNRQPSLHRLSILSHYAKI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAI 530

Query: 565  NIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGS 624
            N++   N  + P +G+P+ +  QD I  + L++ KD+F +R +  QLL  S +S S L  
Sbjct: 531  NLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRAQLTQLL--SMMSDSNL-Q 587

Query: 625  FTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKL 684
            F   P                 P+I KP  LWTGKQV + ++      + P V+      
Sbjct: 588  FDIPP-----------------PSIMKPHYLWTGKQVFSLLIK--PSRKSPVVI------ 622

Query: 685  PQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKE 744
                                    L   NK++              P  +KE     S+ 
Sbjct: 623  -----------------------NLDAKNKVY-------------LPPPKKEYPNEMSQN 646

Query: 745  KELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVF 801
                   +LI  ++++ GV+DK+   D   + + +T+   YG N A   ++ +++L   +
Sbjct: 647  DGF----VLIRGSNILSGVMDKSVLGDGKKHSVFYTILRDYGPNEAAQAMNRMAKLCARY 702

Query: 802  LQMHGFTCGVDDLLILKDKERERKNHLHGS----EEIGKRVHLEALELEDGAEIDPIKLK 857
            L   GF+ G++D+    D +++++  +  +    +E+    +   LE + G        +
Sbjct: 703  LGNRGFSIGINDVTPGSDLKQKKEQMVESAYAKCDELIDLFNKGKLETQPGCN------E 756

Query: 858  SEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGA 917
             +  +A  GG           + S++ +      I EL  + L  P       +M T G+
Sbjct: 757  EQTLEAKIGG-----------LLSKVREEVGEVCIREL--DNLNAPL------IMATCGS 797

Query: 918  KGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQ 977
            KGS +N  Q+ + +GQQ + G RVP     ++LP F      P++ GF+ + F +GL P 
Sbjct: 798  KGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPP 857

Query: 978  EYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGED 1037
            E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR +   IVQF YG D
Sbjct: 858  EFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGIVQFTYGGD 917

Query: 1038 GVD 1040
            G+D
Sbjct: 918  GLD 920



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 1/80 (1%)

Query: 1125 QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
            Q FL +   K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR++
Sbjct: 1066 QKFLSIAISKYHRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1125

Query: 1185 EILTIASKDIKTPVITCPLL 1204
            EI+  ASK I TP+I   L+
Sbjct: 1126 EIIN-ASKVISTPIINAVLV 1144



 Score = 42.7 bits (99), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 29/61 (47%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC      C GHFGHI L +PV++   F     +L+ +C  C     S  +  K + +
Sbjct: 67  CTTCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGALLLSEEDKRKFLTE 126

Query: 61  L 61
           L
Sbjct: 127 L 127


>gi|298709808|emb|CBJ31607.1| RNA polymerase III, largest subunit [Ectocarpus siliculosus]
          Length = 1518

 Score =  345 bits (884), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 265/841 (31%), Positives = 409/841 (48%), Gaps = 171/841 (20%)

Query: 287  VLVPPIKFRLPSKG---GDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMN 343
            +LVPP+  R PS     G    E   TV L +++  N+ +  A ++   N K+I+  W  
Sbjct: 305  LLVPPVPIR-PSVAMDLGGGSNEDDLTVKLQEIIDVNVSV-KAALDNGANVKMIMENWDF 362

Query: 344  LQQSVNVLFDGKNAAGQRDMAS-----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
            LQ  V    +G+     R + +     G+CQ L+ K G FR  L GKRV+++ R+VISPD
Sbjct: 363  LQLEVAQYINGEMPGLPRPIQTTKPIRGLCQRLKGKSGRFRGNLSGKRVDFSARTVISPD 422

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP 458
            P L V+++G+P   A  +T+PE V+ +N+ KLR  + NG ++HPGA         +RL  
Sbjct: 423  PNLRVDQVGVPERVAKIMTFPEMVSRYNIEKLRKVVRNGPDVHPGANQ-------VRLDG 475

Query: 459  N----KKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKP 514
                 KK+ I   R+  +    I            G +V RH++DGDVVL NRQP+LHK 
Sbjct: 476  GDGFVKKLFIEHVREQLSEELKI------------GDIVERHMEDGDVVLFNRQPSLHKM 523

Query: 515  SIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYV 574
            SIM+H  +++   +T R +   CS YNADFDGDEMN+H PQ E +RAEA  ++      V
Sbjct: 524  SIMSHRAKIMPW-RTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASQLMAVPYNLV 582

Query: 575  RPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVL 634
             P NG+PL +  QD + +A L+T++D F + + FC+           + S+ G  G+ V 
Sbjct: 583  TPRNGEPLVAATQDFLTAAYLITQRDIFFDHETFCK-----------VASYMGDAGEHV- 630

Query: 635  ISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFN 694
                  ++ P  PAI KP  LWTGKQ ++ ++      RP                    
Sbjct: 631  ------DIPP--PAIMKPVALWTGKQAMSLMV------RP-------------------- 656

Query: 695  ADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKEL--SEEKL 752
                           SK NK+  +   K               EKN    + L  S+  +
Sbjct: 657  ---------------SKENKILVNFESK---------------EKNYKGNRFLCPSDGYV 686

Query: 753  LIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH-GFT 808
              + ++L+ G + K    D    GL +T+   +G   A   ++ L+++   +L  H GF+
Sbjct: 687  CYHNSELMCGNLAKKTLGDGSKTGLFYTLIREHGPLEAARCMNRLAKVCARYLGGHRGFS 746

Query: 809  CGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALE---LEDG-AEIDP-IKLKSEIEKA 863
             G++D+               G+E       L AL+   L DG  E D  I+L +     
Sbjct: 747  IGIEDV-------------TPGAE-------LSALKHELLTDGYTEADEQIRLFNNNRMP 786

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS---LMTTSGAKGS 920
            ++ G D A+   + ++   L K      + E    G +K     W++   +M   G+KGS
Sbjct: 787  LKPGCD-AIQSLESELNGLLGK------LRETAGTGAMKAL--PWVNSPRIMAECGSKGS 837

Query: 921  KVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYY 980
             +N  Q+ + +GQQ + GKR+      +TLP F      P A GF+ + F +GL   E++
Sbjct: 838  PLNISQMIACVGQQSVGGKRIQNGFVNRTLPHFEANSLFPAAKGFVANSFYSGLTATEFF 897

Query: 981  FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            FH M GREGLVDTAVKT+ +GY+ R L+K LE L + YD +VR+++ +I+QF YG+DG++
Sbjct: 898  FHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDRTVRNSEQTIIQFVYGDDGLN 957

Query: 1041 VHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIM 1100
                        + A  R + RG + F D G         Q + Y K   Q+ ++N ++ 
Sbjct: 958  P---------SCMEANMRVKIRGADDFLDVG---------QPVDYAKLMTQVTSTNLFLH 999

Query: 1101 E 1101
            E
Sbjct: 1000 E 1000



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 5/84 (5%)

Query: 1125 QDFLKLVKHKFVLSLAQPGEP----VGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGI 1180
            ++FL+    K+  +L +PGE     VG + +QS+ EP TQMTL TFH AG   MNVTLG+
Sbjct: 1117 KEFLRRCLDKYKRALVEPGEASLSRVGAIGAQSISEPGTQMTLKTFHFAGVASMNVTLGV 1176

Query: 1181 PRLQEILTIASKDIKTPVITCPLL 1204
            PRL+EI+  ASK+I TP+IT  L+
Sbjct: 1177 PRLKEIIN-ASKNISTPIITAKLV 1199



 Score = 43.5 bits (101), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC +    C GH+GHI L +PV++   F    T+L+ IC  C
Sbjct: 115 CETCSKLLVDCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTC 158


>gi|171186406|ref|YP_001795325.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum neutrophilum
            V24Sta]
 gi|170935618|gb|ACB40879.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum neutrophilum
            V24Sta]
          Length = 884

 Score =  344 bits (883), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 271/848 (31%), Positives = 397/848 (46%), Gaps = 171/848 (20%)

Query: 230  GFKKQKDLFSGP--------------LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGK 275
            G+K+ K  F  P              L P  ++D + K+   + EL      + +  +  
Sbjct: 159  GYKRNKVRFERPYYFYEETEEGALVKLDPEVLRDRLAKVPNEDLELLGLNPSVARPEWA- 217

Query: 276  KAGHSIFFLGVVLVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAY-VNQPD 332
                    L V+ VPP   R PS   ++ +  E   T  L  +++ N  L  A     P 
Sbjct: 218  -------ILKVLPVPPPHVR-PSIQLETGIRSEDDLTHKLVDIIRMNEKLKIAIETGAPT 269

Query: 333  NAKVIVARWMNLQQSVNVLFDGK-------NAAGQRDMASGICQLLEKKEGLFRQKLMGK 385
            N  V+   W  LQ  V   FD +          G R +  GI Q L+ KEG FR  L GK
Sbjct: 270  N--VVDNLWDLLQYHVATYFDNELPGIPVAKHRGGRPL-KGIAQRLKGKEGRFRGSLSGK 326

Query: 386  RVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGAT 445
            RVN++ R+VISPDP++++NE+G+P   A  LT PERVT WNV  LR+ ++ G E  PGA 
Sbjct: 327  RVNFSARTVISPDPHISINEVGVPYDIAKILTVPERVTEWNVDVLREYVMRGPETWPGAN 386

Query: 446  HYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLV 505
            + +        P  +++ +   R +   R         ++    G +V RHL DGD+VL 
Sbjct: 387  YVIT-------PEGRRIDL---RYVKDKRAL-------AERLAPGWIVERHLVDGDIVLF 429

Query: 506  NRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYN 565
            NRQP+LH+ SIM H+V+VL G +T R+H A C  YNADFDGDEMN+H PQ E +RAEA  
Sbjct: 430  NRQPSLHRVSIMGHIVKVLPG-RTFRLHLAVCPPYNADFDGDEMNLHVPQTEEARAEART 488

Query: 566  IVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSF 625
            ++      + P  G  +    QD+I+ A LL++K TFL + E   LL        G G  
Sbjct: 489  LMLVEKHIITPRYGGAIIGARQDYIIGAYLLSQKSTFLTKKELAYLL--------GAGKS 540

Query: 626  TGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLP 685
            T  P +               PA   P  LWTGKQ    V++H               LP
Sbjct: 541  TEDPPE---------------PAFLHPVELWTGKQ----VISHF--------------LP 567

Query: 686  QDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEK 745
            +D    +  A K                                         K +   +
Sbjct: 568  KDLNWVQPTAFKS----------------------------------------KCQDAYR 587

Query: 746  ELSEEKLLIYKNDLVRGVIDK----AQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVF 801
               +E ++I    +V+GV+DK    A+  D  L H +   Y    A   L +  RLF  +
Sbjct: 588  CAGDEWIIIINGVMVKGVLDKKSIGAEQVD-SLWHRIARDYPPEVARRWLDSSLRLFLRY 646

Query: 802  LQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIE 861
            L + GFT G+D + +  +   E                ++AL  E   + D +     IE
Sbjct: 647  LDLRGFTFGIDSVYLPPEAYGE----------------IDALVEESMKKADAL-----IE 685

Query: 862  KAMRGGGDAAVAY-----FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSG 916
            +   G  +A   +     F+ K+T  L+K    + +   + E  +    + +  LM  +G
Sbjct: 686  EFRSGRLEAMPGFTVEETFENKITEILSKVREDAAV---VVEKYISKNTEGY--LMAKTG 740

Query: 917  AKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRP 976
            A+GS VN  Q+ + LGQQ + G+R+ R    +TLP F P D  P AGGF+   F  GL P
Sbjct: 741  ARGSIVNIVQMVATLGQQTIRGERIRRGYRTRTLPHFPPGDIGPHAGGFVGRCFRCGLTP 800

Query: 977  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE 1036
             EY+FH  AGR+GL+DTAV+T++SGY+QR LI  L+ + ++YD +VR +  +++Q  YGE
Sbjct: 801  VEYFFHAAAGRDGLIDTAVRTAQSGYMQRRLINALQDVYVAYDGTVRFSGANLLQMLYGE 860

Query: 1037 DGVDVHQT 1044
            DGVDV ++
Sbjct: 861  DGVDVSRS 868



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 21/180 (11%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCGQ   +CPGHFGH++LV PV +     ++Y +L+  C  C        E+++   +
Sbjct: 67  CETCGQTHDVCPGHFGHVELVKPVIHVEYARIIYDVLRTTCPNCGRIMLKDEEIQRYRER 126

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNY--DNVRNLKPQEWT 118
           L  +     + A +L               +  K+S  M  P   Y  + VR  +P  + 
Sbjct: 127 LTKLKSKWRLLAMNL------------HEKIRKKASERMTCPHCGYKRNKVRFERPYYFY 174

Query: 119 SLQFAEAKLALL--QFLKIETTKCGNCKAK----NPRISKPTFGWIHMNGMPHADIRANL 172
             +  E  L  L  + L+    K  N   +    NP +++P +  + +  +P   +R ++
Sbjct: 175 E-ETEEGALVKLDPEVLRDRLAKVPNEDLELLGLNPSVARPEWAILKVLPVPPPHVRPSI 233


>gi|328354455|emb|CCA40852.1| DNA-directed RNA polymerase II subunit A [Komagataella pastoris CBS
            7435]
          Length = 1460

 Score =  344 bits (882), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 232/756 (30%), Positives = 377/756 (49%), Gaps = 125/756 (16%)

Query: 298  SKGGDSVMEHPQTVLLSKVLQANI---YLANAYVNQPDNAKVIVARWMNLQQ-SVNVLFD 353
            S   D  ++  + V +S +++A I      N  + Q D  ++ VA ++N    ++++L  
Sbjct: 279  SNEDDLTVKLTEIVWISSLIRAGIEKGISINNLIEQWDYLQLSVAMYINSDAGNMSMLPS 338

Query: 354  GKNAAGQRDM--ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
               +AG +      G CQ L+ K+G FR  L GKRV+++ R+VISPDP L ++E+ +P  
Sbjct: 339  AAGSAGSKSSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPDR 398

Query: 412  FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLD 471
             A  LTYPE+VT +N  KL+  ++NG ++HPGA + L +    R    + +R    +KL 
Sbjct: 399  VAKVLTYPEKVTRYNKHKLQQLVLNGPDVHPGANYLLKRDEQNR----RNLRFGNRQKLA 454

Query: 472  TSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLR 531
             +                G +V RHL+DGDVVL NRQP+LH+ SI++H  ++ +  +T R
Sbjct: 455  NTLQI-------------GDIVERHLEDGDVVLFNRQPSLHRLSILSHFAKI-RPWRTFR 500

Query: 532  MHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIV 591
            ++   C+ YNADFDGDEMN+H PQ E +R+EA N++   N  + P +G+P+ +  QD I 
Sbjct: 501  LNECVCTPYNADFDGDEMNLHVPQTEEARSEAMNLMGVKNNLLTPKSGEPIIAATQDFIT 560

Query: 592  SAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWK 651
             + L++ KDTF +R    Q+L S    S G+  F   P                 P+I+K
Sbjct: 561  GSYLISHKDTFFDRASLVQILAS---MSDGIEHFDLPP-----------------PSIFK 600

Query: 652  PEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSK 711
            P  LWTGKQV + ++                  P        N D               
Sbjct: 601  PAYLWTGKQVFSLLIK-----------------PNAKSNVNINLD--------------- 628

Query: 712  TNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD 771
                      K K  +    G+  E   N        +  +++  + ++ GV+DK+   D
Sbjct: 629  ---------AKCKTFIPPPAGQPSEMSPN--------DGFVIVRGSKILSGVMDKSLLGD 671

Query: 772  ---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHL 828
               + + +T+   YG + A   ++ +++L   +L   GF+ G++D+    +  RE++  +
Sbjct: 672  GKKHSVFYTILRDYGPHEAANAMNRMAKLCARYLGNRGFSIGINDVTPGDELSREKECMV 731

Query: 829  HGS----EEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
              +    +E+ K  +   LE + G        + +  +A  GG           + S++ 
Sbjct: 732  EEAYKKCDELIKLFNHGKLETQPGCN------EEQTLEAKIGG-----------LLSKVR 774

Query: 885  KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRM 944
            +      I EL S         N   +M T G+KGS +N  Q+ + +GQQ + G RVP  
Sbjct: 775  EEVGEVCIKELPSS--------NAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDG 826

Query: 945  VSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQ 1004
               ++LP F      P++ GF+ + F +GL P E+ FH ++GREGLVDTAVKT+ +GY+ 
Sbjct: 827  FQDRSLPHFLKNSKTPQSKGFVRNSFYSGLNPPEFLFHAISGREGLVDTAVKTAETGYMS 886

Query: 1005 RCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            R L+K+LE L   YD++VR++   +VQF YG DG+D
Sbjct: 887  RRLMKSLEDLSAQYDHTVRNSSSGVVQFTYGGDGLD 922



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 7/112 (6%)

Query: 1099 IMELPDALKDNAEKFADKFLSN------EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQ 1152
            +++ P++  D +   +   L N      E A   FL+L   K+  +  +PG  VG + +Q
Sbjct: 1031 LLQEPESFVDESPDHSVSILINQLYRITEAAVTKFLELSATKYNRAKVEPGTAVGAIGAQ 1090

Query: 1153 SVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            S+GEP TQMTL TFH AG   MNVTLG+PR++EI+  ASK I TP+I   L+
Sbjct: 1091 SIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-ASKTISTPIINAVLV 1141



 Score = 43.5 bits (101), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC      C GHFGHI L +PV++   F  +  +L+ IC  C
Sbjct: 67  CATCHGNLATCHGHFGHIKLALPVFHVGYFKAVIQVLQTICKSC 110


>gi|290983563|ref|XP_002674498.1| RNA polymerase II [Naegleria gruberi]
 gi|284088088|gb|EFC41754.1| RNA polymerase II [Naegleria gruberi]
          Length = 1757

 Score =  344 bits (882), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 252/787 (32%), Positives = 382/787 (48%), Gaps = 125/787 (15%)

Query: 267  DMQQQGFGK-KAGHSIFFLGVVLVPPIKFRLPS--KGGDSVMEHPQTVLLSKVLQANIYL 323
            D++  GF K  A      L  + +PP + R PS   G     E   T  L+ +++AN  +
Sbjct: 193  DLELLGFDKDNARPEWMILTCLPIPPPQVR-PSVHHGSADRSEDDLTHKLADIIKANAAI 251

Query: 324  A-NAYVNQPDNAKVIVARWMNLQQS--VNVLFDGKNAAGQRD--MASGICQLLEKKEGLF 378
              N     P +    + R +    +  VN  + G   A  +       I Q L+ KEG  
Sbjct: 252  QKNEKSGTPLHQMEEMVRMLQYHCATYVNNEYPGVPTATTKSGRPLKSIRQRLKGKEGRV 311

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R  LMGKRV+++ R+VI+ DP + ++++G+P   A  +T PE VTP+N  +L + + NG 
Sbjct: 312  RGNLMGKRVDFSARTVITADPNIDIDQVGVPRTVASNMTVPEIVTPFNFERLNELVTNGP 371

Query: 439  EIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQ 498
              +PGA + + +  T R+     +R + G+              D      G  V RHLQ
Sbjct: 372  LTYPGAKYVIREDGT-RI----DLRFASGK------------ANDQIQLEYGYKVERHLQ 414

Query: 499  DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEV 558
            DGDV+L NRQP+LHK S+M H ++V+    T RM+ +  + YNADFDGDEMN+H PQ   
Sbjct: 415  DGDVILFNRQPSLHKMSMMGHRIKVMP-YSTFRMNLSVTTPYNADFDGDEMNLHVPQSLQ 473

Query: 559  SRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVS 618
            ++AE   ++      + P +  P+ +L+QD +++A+ LT++D F+ +D     L      
Sbjct: 474  TKAELLELMMVPRNIITPQSNRPVIALVQDTLLAASKLTRRDVFIAKDLMMNCLMH---- 529

Query: 619  SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVV 678
               L  F GK              LP +PAI KP+PLWTGKQ+ T +L  +         
Sbjct: 530  ---LIDFDGK--------------LP-VPAILKPKPLWTGKQLFTFLLPKV--------- 562

Query: 679  ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 738
                                          L  T+  H+D + KK  +    P       
Sbjct: 563  -----------------------------NLENTSSTHEDLTDKKDHLDHDIPE------ 587

Query: 739  KNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSR 796
                      + K+LI + +LV GV+DK         L+H +    G N     L    R
Sbjct: 588  ---------FDTKVLIDRGELVSGVLDKKSLGSSHGSLIHIIVNEKGVNEGKKFLGQCQR 638

Query: 797  LFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKL 856
            +   +L   GF+ G+ D +  K    + +  +  +E   K V L   + ++G      KL
Sbjct: 639  VINHWLINRGFSIGIGDTIADKATMEQIEETIRKAE---KDVKLIVKDAQEG------KL 689

Query: 857  KSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSG 916
            ++E  + ++         F+ ++   LNK    +      S   LK    N I  M T+G
Sbjct: 690  RAEAGRTIQQS-------FENQVNKVLNKAREDAGNKAKKS---LK--DDNNIKSMVTAG 737

Query: 917  AKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRP 976
            +KGS +N  QI + +GQQ +EGKR+P     +TLP F   D  P + GF+ + +L GL P
Sbjct: 738  SKGSYINISQIIACVGQQNVEGKRIPYGFRNRTLPHFAQDDHGPESRGFVANSYLRGLTP 797

Query: 977  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE 1036
            QE++FH M GREGL+DTAVKTS +GY+QR LIK +E + + YD +VRDA G++VQF YGE
Sbjct: 798  QEFFFHTMGGREGLIDTAVKTSETGYIQRRLIKAMEDIMVKYDGTVRDAQGNVVQFLYGE 857

Query: 1037 DGVDVHQ 1043
            DG+D H+
Sbjct: 858  DGMDAHK 864



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 60/79 (75%), Gaps = 2/79 (2%)

Query: 1126 DFL-KLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
            DFL   ++ +F   LAQPGE VG +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+
Sbjct: 1052 DFLVGEIRMRFHNCLAQPGEMVGSVAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 1111

Query: 1185 EILTIASKDIKTPVITCPL 1203
            E+L +A K+IKTP +T  L
Sbjct: 1112 ELLNVA-KNIKTPGLTIYL 1129



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 1  CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVE 55
          C TCG     CPGHFGH+  + PV+N L  N +  +L+ +C  C    A +  ++
Sbjct: 36 CLTCGGNATECPGHFGHVR-IHPVFNVLFINTVVKVLQSVCIHCGKLLADKSSLQ 89


>gi|354483551|ref|XP_003503956.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Cricetulus
           griseus]
          Length = 707

 Score =  344 bits (882), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 241/708 (34%), Positives = 346/708 (48%), Gaps = 122/708 (17%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   V +
Sbjct: 64  CSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAIHLLVCQ 123

Query: 61  LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
           L ++  G + A   L+  L     E++NP   ++  +                    +E+
Sbjct: 124 LRVLEVGALQAVYELERILSRFLEETANPSAFEIQEEL-------------------EEY 164

Query: 118 TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
           TS      K+     L  +     N C++++  I+   F   HM     PH         
Sbjct: 165 TS------KILQNNLLGSQGAHVKNVCESRSRLIA--YFWKTHMTAKRCPH--------- 207

Query: 175 GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
            C  G +    E    L  +  V A   H  +G          ++  + S  VP     +
Sbjct: 208 -CKTGRSVIRKEHNSKLTITYPVTA---HKKSG----------QKDAEPSEGVPVAPGIE 253

Query: 235 KDLFS--GPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPP 291
           + L    G L PS  ++ +  +W+NE F L    S +   G       S+FFL  ++VPP
Sbjct: 254 EALMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGMESSFNPSMFFLDFIVVPP 313

Query: 292 IKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNA 334
            ++R  ++ GD +  + QTV L  V++  + +                      ++ +++
Sbjct: 314 SRYRPVNRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPCEVTELTTDKENDS 373

Query: 335 KVIVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEG 376
            V + R                  W+ LQ  VN++FD +      +   GI Q+LEKKEG
Sbjct: 374 SVAIDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQILEKKEG 433

Query: 377 LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
           LFR+ +MGKRV+YA RSVI PD Y+  NEIGIP  FA +LTYP+ VTPWNV +LR ++IN
Sbjct: 434 LFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVIN 493

Query: 437 GAEIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVY 494
           G  +HPGA+  +  D   T     +   R ++ ++L T       P   +      K+V 
Sbjct: 494 GPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLT-------PATGAPKPQGTKIVC 546

Query: 495 RHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFP 554
           RH+++GD++L+NRQPTLH+PSI AH   +L  EK LR+HYANC  YNADFDGDEMN HFP
Sbjct: 547 RHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMNAHFP 606

Query: 555 QDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYS 614
           Q E+ RAEAY +   + QY+ P +G PL  LIQDH+VS A +T +  F  R+++ +L+Y 
Sbjct: 607 QSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYR 666

Query: 615 SGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI 662
                      T K G+  L            PAI KP PLWTGKQVI
Sbjct: 667 ---------GLTDKVGRVKLFP----------PAILKPFPLWTGKQVI 695


>gi|254573222|ref|XP_002493720.1| RNA polymerase III subunit C160, part of core enzyme [Komagataella
            pastoris GS115]
 gi|238033519|emb|CAY71541.1| RNA polymerase III subunit C160, part of core enzyme [Komagataella
            pastoris GS115]
          Length = 1460

 Score =  344 bits (882), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 232/756 (30%), Positives = 377/756 (49%), Gaps = 125/756 (16%)

Query: 298  SKGGDSVMEHPQTVLLSKVLQANI---YLANAYVNQPDNAKVIVARWMNLQQ-SVNVLFD 353
            S   D  ++  + V +S +++A I      N  + Q D  ++ VA ++N    ++++L  
Sbjct: 279  SNEDDLTVKLTEIVWISSLIRAGIEKGISINNLIEQWDYLQLSVAMYINSDAGNMSMLPS 338

Query: 354  GKNAAGQRDM--ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
               +AG +      G CQ L+ K+G FR  L GKRV+++ R+VISPDP L ++E+ +P  
Sbjct: 339  AAGSAGSKSSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPDR 398

Query: 412  FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLD 471
             A  LTYPE+VT +N  KL+  ++NG ++HPGA + L +    R    + +R    +KL 
Sbjct: 399  VAKVLTYPEKVTRYNKHKLQQLVLNGPDVHPGANYLLKRDEQNR----RNLRFGNRQKLA 454

Query: 472  TSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLR 531
             +                G +V RHL+DGDVVL NRQP+LH+ SI++H  ++ +  +T R
Sbjct: 455  NTLQI-------------GDIVERHLEDGDVVLFNRQPSLHRLSILSHFAKI-RPWRTFR 500

Query: 532  MHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIV 591
            ++   C+ YNADFDGDEMN+H PQ E +R+EA N++   N  + P +G+P+ +  QD I 
Sbjct: 501  LNECVCTPYNADFDGDEMNLHVPQTEEARSEAMNLMGVKNNLLTPKSGEPIIAATQDFIT 560

Query: 592  SAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWK 651
             + L++ KDTF +R    Q+L S    S G+  F   P                 P+I+K
Sbjct: 561  GSYLISHKDTFFDRASLVQILAS---MSDGIEHFDLPP-----------------PSIFK 600

Query: 652  PEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSK 711
            P  LWTGKQV + ++                  P        N D               
Sbjct: 601  PAYLWTGKQVFSLLIK-----------------PNAKSNVNINLD--------------- 628

Query: 712  TNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD 771
                      K K  +    G+  E   N        +  +++  + ++ GV+DK+   D
Sbjct: 629  ---------AKCKTFIPPPAGQPSEMSPN--------DGFVIVRGSKILSGVMDKSLLGD 671

Query: 772  ---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHL 828
               + + +T+   YG + A   ++ +++L   +L   GF+ G++D+    +  RE++  +
Sbjct: 672  GKKHSVFYTILRDYGPHEAANAMNRMAKLCARYLGNRGFSIGINDVTPGDELSREKECMV 731

Query: 829  HGS----EEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
              +    +E+ K  +   LE + G        + +  +A  GG           + S++ 
Sbjct: 732  EEAYKKCDELIKLFNHGKLETQPGCN------EEQTLEAKIGG-----------LLSKVR 774

Query: 885  KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRM 944
            +      I EL S         N   +M T G+KGS +N  Q+ + +GQQ + G RVP  
Sbjct: 775  EEVGGVCIKELPSS--------NAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDG 826

Query: 945  VSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQ 1004
               ++LP F      P++ GF+ + F +GL P E+ FH ++GREGLVDTAVKT+ +GY+ 
Sbjct: 827  FQDRSLPHFLKNSKTPQSKGFVRNSFYSGLNPPEFLFHAISGREGLVDTAVKTAETGYMS 886

Query: 1005 RCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            R L+K+LE L   YD++VR++   +VQF YG DG+D
Sbjct: 887  RRLMKSLEDLSAQYDHTVRNSSSGVVQFTYGGDGLD 922



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 7/112 (6%)

Query: 1099 IMELPDALKDNAEKFADKFLSN------EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQ 1152
            +++ P++  D +   +   L N      E A   FL+L   K+  +  +PG  VG + +Q
Sbjct: 1031 LLQEPESFVDESPDHSVSILINQLYRITEAAVTKFLELSATKYNRAKVEPGTAVGAIGAQ 1090

Query: 1153 SVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            S+GEP TQMTL TFH AG   MNVTLG+PR++EI+  ASK I TP+I   L+
Sbjct: 1091 SIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-ASKTISTPIINAVLV 1141



 Score = 43.5 bits (101), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC      C GHFGHI L +PV++   F  +  +L+ IC  C
Sbjct: 67  CATCHGNLATCHGHFGHIKLALPVFHVGYFKAVIQVLQTICKSC 110


>gi|358060144|dbj|GAA94203.1| hypothetical protein E5Q_00851 [Mixia osmundae IAM 14324]
          Length = 1436

 Score =  343 bits (881), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 254/771 (32%), Positives = 381/771 (49%), Gaps = 127/771 (16%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARW 341
            F    +LVPP+  R   +  D+  E   TV L++++  N  L  + + +     V + +W
Sbjct: 278  FIWQYLLVPPVTIRPSVQQDDATNEDDLTVKLAEIVFTN-QLIKSGLAKGIQTNVFMEQW 336

Query: 342  MNLQQSV----NVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
              LQ +V    N   +    +GQ+ M  G+CQ L+ K+G FR  L GKRV+++ R+VISP
Sbjct: 337  DFLQHAVATYINSDVNNNTISGQKPM-RGLCQRLKGKQGRFRGNLSGKRVDFSARTVISP 395

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DP L ++E+ +P   A  LTYPERVT  N+ +LR ++ NG E+HPGA + +         
Sbjct: 396  DPNLRIDEVAVPEKVAKILTYPERVTSHNLEQLRKAVRNGKEVHPGACYVISA------- 448

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIM 517
                   + G K D   G  ++  K       G +V RHL+D D+VL NRQP+LHK SIM
Sbjct: 449  -------ATGIKKDLKYGNPIELAKQLRI---GDVVERHLRDDDIVLFNRQPSLHKLSIM 498

Query: 518  AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
            +H V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +R EA ++++     V P 
Sbjct: 499  SHRVKV-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARTEAAHLMSIKQNLVTPR 557

Query: 578  NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISR 637
            NG+P+ +  QD I  A LL+++D FLNR E  Q+L                      ++ 
Sbjct: 558  NGEPIIAATQDFITGAFLLSRRDKFLNRAEIGQIL--------------------CYLTD 597

Query: 638  SEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVE---RGGKLPQDFFKTRFN 694
            +E ++    P I +P+ LWTGKQV + ++   +R      +E   R  + P         
Sbjct: 598  AEGDLELPPPTILRPKQLWTGKQVFSVLMRPSSRSSICVNLEAKCRTFEAPP-------- 649

Query: 695  ADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLI 754
            A    D   ND G L   N +    +  K  V +GK        KN              
Sbjct: 650  AGYAPDMSPND-GYLVIENSVIMCGALDKATVGDGK--------KNS------------- 687

Query: 755  YKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
                 V GV+      DYG          ++ A   ++ LS+L   +L   GF+ G+ D+
Sbjct: 688  -----VFGVL----LRDYG----------ADAAAQAMNRLSKLCARWLTNQGFSIGISDV 728

Query: 815  L---ILKDK--ERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGD 869
                 L+D+  +R RK +   +  I +  H    +LE+ A  D       +E ++ G   
Sbjct: 729  TPGDKLRDEKDDRIRKAYEESNLLITQAAH---GKLENAAGCDQ---DQTLEASISG--- 779

Query: 870  AAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISS 929
                     + S++        + EL        +  N   +M   G+KGSK+N  Q+ +
Sbjct: 780  ---------VLSRVRDKVGEICMTEL--------SRNNAPLIMAICGSKGSKINVCQMVA 822

Query: 930  HLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREG 989
             +GQQ   GKRV      ++LP +      P + GF+ + F +GL   E++FH ++GREG
Sbjct: 823  CVGQQITNGKRVADGFINRSLPHYLKKSKNPPSKGFVRNSFYSGLTATEFFFHAISGREG 882

Query: 990  LVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            LVDTAVKT+ +GY+QR L+K LE L   YD SVR + GSIVQF YG DG+D
Sbjct: 883  LVDTAVKTAETGYMQRRLMKALEDLSTRYDLSVRSSTGSIVQFMYGNDGLD 933



 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 55/78 (70%), Gaps = 1/78 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            FL L   K+  S+ +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR++EI
Sbjct: 1059 FLLLCWEKYARSMVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI 1118

Query: 1187 LTIASKDIKTPVITCPLL 1204
            +  ASK I TP+IT  LL
Sbjct: 1119 IN-ASKVISTPIITAELL 1135



 Score = 47.8 bits (112), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG+R   C GH+G+I L VP+++   F     +L+ IC  C        +    +RK
Sbjct: 99  CETCGERAKECVGHYGYIKLTVPLFHTGYFRKTIEILQVICKVCSRTLLDDDQQRAALRK 158

Query: 61  L 61
           L
Sbjct: 159 L 159


>gi|209880239|ref|XP_002141559.1| DNA-directed RNA polymerase II subunit RPB1 [Cryptosporidium muris
            RN66]
 gi|209557165|gb|EEA07210.1| DNA-directed RNA polymerase II subunit RPB1, putative
            [Cryptosporidium muris RN66]
          Length = 1927

 Score =  343 bits (881), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 245/786 (31%), Positives = 388/786 (49%), Gaps = 107/786 (13%)

Query: 267  DMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN 325
            DM+  GF  K  +  +F+  +L +PP   R   + G    E   T+ L ++++ N  L  
Sbjct: 212  DMKLLGFDPKRCNPCWFVTTILPIPPPAVRPYVQFGSDRSEDDLTLKLQQIVKLNENLKR 271

Query: 326  AY-VNQPDNA--KVIVARWMNLQQSVNVLFDGKNAAGQRD--MASGICQLLEKKEGLFRQ 380
               +  PD+   ++I     +L   VN    G   +  R       +   L+ K+G  R 
Sbjct: 272  QIRLGSPDHILNEMIAVLQYHLVTLVNNDLPGLPQSRTRSNRPIKSLRARLKGKDGRIRG 331

Query: 381  KLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEI 440
             LMGKRV+++ R+VI+ DP L+V+++G+P   A+ LTYPE VTP+N+ +L++ +  G   
Sbjct: 332  NLMGKRVDFSARTVITGDPNLSVDQVGVPYSIAMTLTYPEIVTPYNIEELKELVERGPYE 391

Query: 441  HPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDG 500
             PGAT  +    T       K+ +    + + +   ++Q          G  V RH+++ 
Sbjct: 392  WPGATSIVQDDGT-------KIDLRFCNRSNNNANCVLQ---------YGWKVERHMKND 435

Query: 501  DVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSR 560
            D+VL NRQP+LHK SIM H V++L    T R++ +  S YNADFDGDEMN+H  Q   +R
Sbjct: 436  DLVLFNRQPSLHKMSIMGHRVKILP-YSTFRLNLSVTSPYNADFDGDEMNLHLAQSYETR 494

Query: 561  AEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSS 620
            +E  +++    Q V P    P+  ++QD ++   LLT+K TFL +D F QLL        
Sbjct: 495  SEIKHLMMVPKQIVSPQGNRPVIGIVQDSLLGLFLLTRKSTFLTKDRFLQLLLC------ 548

Query: 621  GLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVER 680
             +  + G              ++P  PAI +P+PLWTGKQ+IT +L         F  + 
Sbjct: 549  -IPYWNG--------------IIP-PPAILRPQPLWTGKQIITVLLT--------FTTDL 584

Query: 681  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
            G  +  +  +                   S  N    + SG K E       E KE   N
Sbjct: 585  GEPIELNLMRDG-----------------SIVNIRSSNTSGNKSE----NKDEAKETIIN 623

Query: 741  KSKEKELSEEKLLIYKNDLVRGVIDK--AQFADYGLVHTVQELYGSNTAGTLLSALSRLF 798
                 E  + ++LI + + + G+I K  A  +   L+H +    G    G  L+    + 
Sbjct: 624  NPWISEY-DNQVLIQQGEHICGIITKKIAGSSSGSLIHILWNEIGPEKTGLFLTYTQMVV 682

Query: 799  TVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKS 858
              +L  HGFT G  D+  L     +    L  S     ++H++ +               
Sbjct: 683  NTWLLEHGFTVGCQDIQPLNFTLEKIMTSLENS-----KLHVQQI--------------- 722

Query: 859  EIEKAMRG-----GGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
             I +A +G      G + V  F+ ++  +LN   S+  ++ +++   L P+  N I+ M 
Sbjct: 723  -IRRAQKGQLDCQPGKSLVESFEAQVNQELN---SAREMSGIIATENLDPSKNNMIA-MV 777

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
              G+KGS +N  QI + +GQQ +EGKR+P     ++LP F  +D+ P + GF+ + +L+G
Sbjct: 778  QCGSKGSTINISQIMACVGQQNVEGKRIPFGFRDRSLPHFLKYDYGPESRGFVSNSYLSG 837

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            L PQE +FH M GREG++DTA KTS +GY+QR LIK +E   + YD +VR+  G I+QF 
Sbjct: 838  LTPQEVFFHAMGGREGIIDTACKTSETGYIQRRLIKAMEDCMVQYDRTVRNCCGDIIQFL 897

Query: 1034 YGEDGV 1039
            YGEDG+
Sbjct: 898  YGEDGM 903



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 57/70 (81%), Gaps = 1/70 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++H+F  SLA  GE VG +A+QS+GEP+TQMTLNTFH AG G  NVTLG+PRL+E++ +A
Sbjct: 1101 IQHQFYRSLAHSGEMVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLRELINVA 1160

Query: 1191 SKDIKTPVIT 1200
             K+++TP +T
Sbjct: 1161 -KNVRTPTLT 1169



 Score = 43.9 bits (102), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHF HI+L  P+++    +++  +L+ +CF C
Sbjct: 70  CETCHMDIKTCPGHFAHIELGKPMFHIGFVSVVLKILRCVCFAC 113


>gi|66359288|ref|XP_626822.1| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A''
            subunit, long PHYSPTS repeat at
 gi|46228363|gb|EAK89262.1| putative DNA-directed RNA polymerase,possible RNA polymerase
            A/beta'/A'' subunit, long PHYSPTS repeat at C-terminus
            [Cryptosporidium parvum Iowa II]
          Length = 1902

 Score =  343 bits (881), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 252/792 (31%), Positives = 386/792 (48%), Gaps = 122/792 (15%)

Query: 267  DMQQQGFGK-KAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN 325
            DM+  GF   K   S F   V+ +PP   R   + G    E   T+ L ++++ N  L  
Sbjct: 220  DMKILGFDPVKCNPSWFINTVIPIPPPAVRPYVQFGSDRSEDDLTLKLQQIIKLNENLKK 279

Query: 326  AY-VNQPDNAKVIVARWMNLQQSVNVLFDG-------KNAAGQRDMASGICQLLEKKEGL 377
               +  P++  +I      LQ  +  L +              R + S +   L+ K+G 
Sbjct: 280  QIRIGSPEH--IISEMSTVLQYHLITLINNDLPGLPQSRTRSNRPIKS-LRARLKGKDGR 336

Query: 378  FRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIING 437
             R  LMGKRV+++ R+VI+ DP LAV+++G+P   A+ LTYPE VTP+N+ +L++ +  G
Sbjct: 337  IRGNLMGKRVDFSARTVITGDPNLAVDQVGVPYSIAMTLTYPEVVTPYNIEELKELVQRG 396

Query: 438  AEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
                PGAT  + +  T        +R S       +   I+Q          G  V RH+
Sbjct: 397  PHEWPGATSIIQEDGT-----KVDLRFS---NTSNNSNNILQ---------YGWKVERHM 439

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            ++ D+VL NRQP+LHK SIM H V++L    T R++ +  S YNADFDGDEMN+H  Q  
Sbjct: 440  KNDDLVLFNRQPSLHKMSIMGHRVKILP-YSTFRLNLSVTSPYNADFDGDEMNLHLAQSH 498

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
             +R+E  N++    Q V P    P+  ++QD ++   LLT+K TFL RD+F QLL     
Sbjct: 499  ETRSEIKNLMMVPRQIVSPQGNKPVIGIVQDSLLGIFLLTRKSTFLTRDKFLQLL----- 553

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
                           + I      + P  PAI +P+PLWTGKQ+IT +L         F 
Sbjct: 554  ---------------LCIPYWNGNIPP--PAILRPQPLWTGKQIITVLLA--------FT 588

Query: 678  VERGGKLPQDFFKT-RFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
             + G  +  +  +     + KQS+   N            KD S              KE
Sbjct: 589  TDLGEPIELNLMRDGSIVSIKQSNNSSNTD----------KDDS--------------KE 624

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDK--AQFADYGLVHTVQELYGSNTAGTLLSAL 794
            A  N     EL + +++I K + + GV+ K  A  +   L+H +    G    G  L+  
Sbjct: 625  AIVNNPWISEL-DNQVIIQKGEHICGVLTKKIAGSSSGSLIHILWNEIGPEKTGLFLTYT 683

Query: 795  SRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
              +   +L  HGFT G  D+        +  N L GS+                     +
Sbjct: 684  QMVVNTWLLEHGFTVGCQDIQPQNYTLEKIMNSLEGSK---------------------L 722

Query: 855  KLKSEIEKAMRGG-----GDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKN 907
            +++  I +A +G      G + +  F+ ++  +LN  +  S ++  E L       + KN
Sbjct: 723  QVQQIIRRAQKGKLDCQPGKSLIESFEAQVNQELNSARELSGTIATENLD------SSKN 776

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
             I  M   G+KGS +N  QI + +GQQ +EGKR+P     ++LP F  +D+ P + GF+ 
Sbjct: 777  NIVAMVQCGSKGSTINISQIMACVGQQNVEGKRIPFGFRDRSLPHFLKYDYGPESRGFVS 836

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
            + +L+GL PQE +FH M GREG++DTA KTS +GY+QR LIK +E   + YD +VR+++G
Sbjct: 837  NSYLSGLTPQEVFFHAMGGREGIIDTACKTSETGYIQRRLIKAMEDCMVQYDRTVRNSNG 896

Query: 1028 SIVQFCYGEDGV 1039
             I+QF YGEDG+
Sbjct: 897  DIIQFLYGEDGM 908



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 59/76 (77%), Gaps = 1/76 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++H+F  SLA  GE VG +A+QS+GEP+TQMTLNTFH AG G  NVTLG+PRL+E++ +A
Sbjct: 1104 IEHQFYRSLAHSGEMVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLRELINVA 1163

Query: 1191 SKDIKTPVITCPLLVG 1206
             K+++TP +T  L  G
Sbjct: 1164 -KNVRTPTLTVYLESG 1178



 Score = 43.1 bits (100), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHF HI+L  P+++      +  LL+ +C+ C
Sbjct: 77  CETCHMDIKTCPGHFAHIELGKPMFHIGFITTVLKLLRCVCYAC 120


>gi|21280517|gb|AAM45151.1|AF395110_1 RNA polymerase II largest subunit [Naegleria gruberi]
          Length = 1590

 Score =  343 bits (881), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 228/679 (33%), Positives = 341/679 (50%), Gaps = 116/679 (17%)

Query: 367  ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
            I Q L+ KEG  R  LMGKRV+++ R+VI+ DP + ++++G+P   A  +T PE VTP+N
Sbjct: 256  IRQRLKGKEGRVRGNLMGKRVDFSARTVITADPNIDIDQVGVPRTVASNMTVPEIVTPFN 315

Query: 427  VVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN 486
              +L + + NG   +PGA + + +  T R+     +R + G+              D   
Sbjct: 316  FERLNELVTNGPLTYPGAKYVIREDGT-RI----DLRFASGK------------ANDQIQ 358

Query: 487  EFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDG 546
               G  V RHLQDGDV+L NRQP+LHK S+M H ++V+    T RM+ +  + YNADFDG
Sbjct: 359  LEYGYKVERHLQDGDVILFNRQPSLHKMSMMGHRIKVMP-YSTFRMNLSVTTPYNADFDG 417

Query: 547  DEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRD 606
            DEMN+H PQ   ++AE   +       + P +  P+ +L+QD +++A+ LT++D F+ +D
Sbjct: 418  DEMNLHVPQSLQTKAELLELTMVPRNIITPQSNRPVIALVQDTLLAASKLTRRDVFIAKD 477

Query: 607  EFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL 666
                 L         L  F GK              LP +PAI KP+PLWTGKQ+ T +L
Sbjct: 478  LMMNCLMH-------LIDFDGK--------------LP-VPAILKPKPLWTGKQLFTFLL 515

Query: 667  NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEV 726
              +                                       L  T+  H+D + KK  +
Sbjct: 516  PKVN--------------------------------------LENTSSTHEDLTDKKDHL 537

Query: 727  VEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGS 784
                P                 + K+LI + +LV GV+DK         L+H +    G 
Sbjct: 538  DHDIPE---------------FDTKVLIDRGELVSGVLDKKSLGSSHGSLIHIIVNEKGV 582

Query: 785  NTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALE 844
            N     L    R+   +L   GF+ G+ D +  K    + +  +  +E   K V L   +
Sbjct: 583  NEGKKFLGQCQRVINHWLINRGFSIGIGDTIADKATMEQIEETIRKAE---KDVKLIVKD 639

Query: 845  LEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPT 904
             ++G      KL++E  + ++         F+ ++   LNK    +      S   LK  
Sbjct: 640  AQEG------KLRAEAGRTIQQS-------FENQVNKVLNKAREDAGNKAKKS---LK-- 681

Query: 905  GKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGG 964
              N I  M T+G+KGS +N  QI + +GQQ +EGKR+P     +TLP F   D  P + G
Sbjct: 682  DDNNIKSMVTAGSKGSYINISQIIACVGQQNVEGKRIPYGFRNRTLPHFAQDDHGPESRG 741

Query: 965  FIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD 1024
            F+ + +L GL PQE++FH M GREGL+DTAVKTS +GY+QR LIK +E + + YD +VRD
Sbjct: 742  FVANSYLRGLTPQEFFFHTMGGREGLIDTAVKTSETGYIQRRLIKAMEDIMVKYDGTVRD 801

Query: 1025 ADGSIVQFCYGEDGVDVHQ 1043
            A G++VQF YGEDG+D H+
Sbjct: 802  AQGNVVQFLYGEDGMDAHK 820



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/70 (62%), Positives = 55/70 (78%), Gaps = 1/70 (1%)

Query: 1134 KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKD 1193
            +F   LAQPGE VG +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+E+L +A K+
Sbjct: 1018 RFHNCLAQPGEMVGSVAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKELLNVA-KN 1076

Query: 1194 IKTPVITCPL 1203
            IKTP +T  L
Sbjct: 1077 IKTPGLTIYL 1086



 Score = 42.7 bits (99), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 11 CPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVE 55
          CPGHFGH+  + PV+N L  N +  +L+ +C  C    A +  ++
Sbjct: 2  CPGHFGHVR-IHPVFNVLFINTVVKVLQSVCIHCGKLLADKSSLQ 45


>gi|67597591|ref|XP_666157.1| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis
            TU502]
 gi|54657094|gb|EAL35927.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
            [Cryptosporidium hominis]
          Length = 1895

 Score =  343 bits (881), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 251/792 (31%), Positives = 388/792 (48%), Gaps = 122/792 (15%)

Query: 267  DMQQQGFGK-KAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN 325
            DM+  GF   K   S F   V+ +PP   R   + G    E   T+ L ++++ N  L  
Sbjct: 213  DMKILGFDPVKCNPSWFINTVIPIPPPTVRPYVQFGSDRSEDDLTLKLQQIIKLNENLKK 272

Query: 326  AY-VNQPDNAKVIVARWMNLQQSVNVLFDG-------KNAAGQRDMASGICQLLEKKEGL 377
               +  P++  +I      LQ  +  L +              R + S +   L+ K+G 
Sbjct: 273  QIRIGSPEH--IISEMSTVLQYHLITLINNDLPGLPQSRTRSNRPIKS-LRARLKGKDGR 329

Query: 378  FRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIING 437
             R  LMGKRV+++ R+VI+ DP LAV+++G+P   A+ LTYPE VTP+N+ +L++ +  G
Sbjct: 330  IRGNLMGKRVDFSARTVITGDPNLAVDQVGVPYSIAMTLTYPEVVTPYNIEELKELVQRG 389

Query: 438  AEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
                PGAT  + +                G K+D  R +      ++  ++ G  V RH+
Sbjct: 390  PHEWPGATSIIQE---------------DGTKVDL-RFSNTSNNSNNMLQY-GWKVERHM 432

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            ++ D+VL NRQP+LHK SIM H V++L    T R++ +  S YNADFDGDEMN+H  Q  
Sbjct: 433  KNDDLVLFNRQPSLHKMSIMGHRVKILP-YSTFRLNLSVTSPYNADFDGDEMNLHLAQSH 491

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
             +R+E  N++    Q V P    P+  ++QD ++   LLT+K TFL RD+F QLL     
Sbjct: 492  ETRSEIKNLMMVPRQIVSPQGNKPVIGIVQDSLLGIFLLTRKSTFLTRDKFLQLL----- 546

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
                           + I      + P  PAI +P+PLWTGKQ+IT +L         F 
Sbjct: 547  ---------------LCIPYWNGNIPP--PAILRPQPLWTGKQIITVLLA--------FT 581

Query: 678  VERGGKLPQDFFKT-RFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
             + G  +  +  +     + KQS+   N            KD S              KE
Sbjct: 582  TDLGEPIELNLMRDGSIVSIKQSNNSSNTD----------KDDS--------------KE 617

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDK--AQFADYGLVHTVQELYGSNTAGTLLSAL 794
            A  N     EL + +++I K + + GV+ K  A  +   L+H +    G    G  L+  
Sbjct: 618  AIVNNPWISEL-DNQVIIQKGEHICGVLTKKIAGSSSGSLIHILWNEIGPEKTGLFLTYT 676

Query: 795  SRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
              +   +L  HGFT G  D+        +  N L GS+                     +
Sbjct: 677  QMVVNTWLLEHGFTVGCQDIQPQNYTLEKIMNSLEGSK---------------------L 715

Query: 855  KLKSEIEKAMRGG-----GDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKN 907
            +++  I +A +G      G + +  F+ ++  +LN  +  S ++  E L       + KN
Sbjct: 716  QVQQIIRRAQKGKLDCQPGKSLIESFEAQVNQELNSARELSGTIATENLD------SSKN 769

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
             I  M   G+KGS +N  QI + +GQQ +EGKR+P     ++LP F  +D+ P + GF+ 
Sbjct: 770  NIVAMVQCGSKGSTINISQIMACVGQQNVEGKRIPFGFRDRSLPHFLKYDYGPESRGFVS 829

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
            + +L+GL PQE +FH M GREG++DTA KTS +GY+QR LIK +E   + YD +VR+++G
Sbjct: 830  NSYLSGLTPQEVFFHAMGGREGIIDTACKTSETGYIQRRLIKAMEDCMVQYDRTVRNSNG 889

Query: 1028 SIVQFCYGEDGV 1039
             I+QF YGEDG+
Sbjct: 890  DIIQFLYGEDGM 901



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 59/76 (77%), Gaps = 1/76 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++H+F  SLA  GE VG +A+QS+GEP+TQMTLNTFH AG G  NVTLG+PRL+E++ +A
Sbjct: 1097 IEHQFYRSLAHSGEMVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLRELINVA 1156

Query: 1191 SKDIKTPVITCPLLVG 1206
             K+++TP +T  L  G
Sbjct: 1157 -KNVRTPTLTVYLESG 1171



 Score = 43.1 bits (100), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHF HI+L  P+++      +  LL+ +C+ C
Sbjct: 70  CETCHMDIKTCPGHFAHIELGKPMFHIGFITTVLKLLRCVCYAC 113


>gi|444314063|ref|XP_004177689.1| hypothetical protein TBLA_0A03720 [Tetrapisispora blattae CBS 6284]
 gi|387510728|emb|CCH58170.1| hypothetical protein TBLA_0A03720 [Tetrapisispora blattae CBS 6284]
          Length = 1458

 Score =  343 bits (879), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 235/725 (32%), Positives = 358/725 (49%), Gaps = 122/725 (16%)

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMG 384
            N  +   D  ++ VA ++N      +L  G +   +     G CQ L+ K+G FR  L G
Sbjct: 310  NNMMEHWDYLQLSVAMYINSDSVNPLLMPGASTGNKVKPIRGFCQRLKGKQGRFRGNLSG 369

Query: 385  KRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGA 444
            KRV+++ R+VISPDP L+++E+ +P   A  LT+PERVT +N  KL+  ++NG  +HPGA
Sbjct: 370  KRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPERVTRYNKRKLQALVLNGPNVHPGA 429

Query: 445  THYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVL 504
             + L K    R       ++ + + L                   G +V RHL+DGDVVL
Sbjct: 430  NYLLKKDEEARRNLRYGDKVKLAKNLQI-----------------GDVVERHLEDGDVVL 472

Query: 505  VNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAY 564
             NRQP+LH+ SI++H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA 
Sbjct: 473  FNRQPSLHRLSILSHYAKI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAI 531

Query: 565  NIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGS 624
            N++   N  + P +G+P+ +  QD I  + L++ KD+F +R  F QLL    +   G   
Sbjct: 532  NLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATFTQLL---SMMCDGNLQ 588

Query: 625  FTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKL 684
            F   P                 PAI KP  LWTGKQ+ + ++        P V+      
Sbjct: 589  FDIPP-----------------PAIMKPCYLWTGKQLFSLLIK--PNSNSPVVI------ 623

Query: 685  PQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKE 744
                     N D +              NK+ K                     K+KS  
Sbjct: 624  ---------NVDAK--------------NKVFK-------------------PPKDKSLP 641

Query: 745  KELSEEK--LLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFT 799
             E+S     ++I  + ++ GV+DK+   D   + + +T+   YG   A T ++ +++L  
Sbjct: 642  SEMSPNDGFVVIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAATAMNRMAKLCA 701

Query: 800  VFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEI--GKRVHLEALELEDGAEIDPIKLK 857
             FL   GF+ G++D +   DK +  K +L    EI   K   L  L  +   E  P   +
Sbjct: 702  RFLGNRGFSIGIND-VTPDDKLKNLKENL---VEIAYAKCDELIGLYNQGKLETQPGCNE 757

Query: 858  SEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS--LMTTS 915
             +  +A   G           + S++ +      INEL           NW +  +M T 
Sbjct: 758  EQTLEAKISG-----------ILSKVREEVGDICINEL----------DNWNAPLIMATC 796

Query: 916  GAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLR 975
            G+KGS +N  Q+ + +GQQ + G RVP     ++LP F      P++ GF+ + F +GL 
Sbjct: 797  GSKGSNLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFQKNSKTPQSKGFVRNSFYSGLS 856

Query: 976  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYG 1035
            P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR +   IVQF YG
Sbjct: 857  PPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGIVQFTYG 916

Query: 1036 EDGVD 1040
             DG+D
Sbjct: 917  GDGLD 921



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 4/104 (3%)

Query: 1101 ELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQ 1160
            + PD+++ + E+        E   ++FLK+   K+  +  +PG  VG + +QS+GEP TQ
Sbjct: 1046 QTPDSIRHSVEQICR---ITENTVREFLKIAITKYRRARVEPGTAVGAIGAQSIGEPGTQ 1102

Query: 1161 MTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            MTL TFH AG   MNVTLG+PR++EI+  ASK I TP+I   L+
Sbjct: 1103 MTLKTFHFAGVASMNVTLGVPRIKEIIN-ASKVISTPIINAVLV 1145



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      C GHFGHI L +PV++   F     +L+ IC  C
Sbjct: 67  CETCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQAICKSC 110


>gi|120561172|gb|ABM26981.1| RNA polymerase II largest subunit [Nosema trichoplusiae]
          Length = 989

 Score =  343 bits (879), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 244/778 (31%), Positives = 384/778 (49%), Gaps = 129/778 (16%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
              L V+LVPP   R PS   + ++  E   T  LS ++++N YL   Y  +     +I  
Sbjct: 130  LILTVLLVPPPSVR-PSIVMEGMLRAEDDLTHKLSDIIKSNTYLKK-YEMEGAPGHIIRD 187

Query: 340  RWMNLQQSVNVLFDGKNAAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYAC 391
                LQ  V  L D  + +GQ        R + S I   L+ KEG  R  LMGKRV+++ 
Sbjct: 188  YEQLLQFHVATLID-NDISGQPQALQKSGRPLKS-ISARLKGKEGRVRGNLMGKRVDFSA 245

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            RSVI+ D  +++ E+G+P   A   T+PE++TP+N+ KL   + NG   +PGA +Y+ + 
Sbjct: 246  RSVITADANISLEEVGVPLEVAKIHTFPEKITPFNIEKLEKLVANGPNEYPGA-NYVIRT 304

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
               R+             L+ +RG I           EG +V RH+Q+GD +L NRQP+L
Sbjct: 305  DGQRI------------DLNFNRGDIKLE--------EGYIVERHMQNGDTILFNRQPSL 344

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK S+M H VRV++G KTLR++ +  S YNADFDGDEMN+H PQ+  S AE   I     
Sbjct: 345  HKMSMMGHKVRVMEG-KTLRLNLSVTSPYNADFDGDEMNLHMPQNYNSIAELEEICMVPK 403

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSS---GLGSFTGK 628
            Q + P +  P+  ++QD +      T +D F +++E  Q+LYS         GL S   K
Sbjct: 404  QILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNEMMQVLYSIDFDKYYDIGLDSVI-K 462

Query: 629  PGQRVLISRSEQEVLPLL--PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQ 686
             G+++ +   E  ++ LL  PAI KP+ LWTGKQ+++ +                   P 
Sbjct: 463  KGKKLDMGAKEYSLMGLLSKPAIQKPKQLWTGKQILSFI------------------FPN 504

Query: 687  DFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKE 746
             F+K   N  +++D +                                            
Sbjct: 505  VFYKNSSNESRENDLEN------------------------------------------- 521

Query: 747  LSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFL-Q 803
            +S+  ++I   +++ G+IDK        GLVH +   +G +     +  + ++ T FL  
Sbjct: 522  VSDTSVVICGGEIMSGIIDKKAVGATQGGLVHIIANDFGCSRVTLFIDDIQKIITKFLMN 581

Query: 804  MHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            +H F+ G+ D +   D  +  K  +  S++                 +D I  K++  + 
Sbjct: 582  IHVFSMGIGDTVADSDTLKYVKQAIEKSKD----------------SVDEIIRKAQNNRL 625

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK-NWISLMTTSGAKGSKV 922
             R  G      F+ ++   LNK    S           K   K N +  M  SG+KGS +
Sbjct: 626  DRLPGMTMKESFESQVNYVLNKARDVS------GTSTQKSLNKCNNMKAMVLSGSKGSFI 679

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  Q+++ +GQQ +EG+R+P   + +TLP F   D++ ++ GF+ + +L+GL P+E++FH
Sbjct: 680  NISQVTACVGQQNVEGRRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFH 739

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             M GREGL+DTA+KT+ +GY+QR L+K +E   +  D SVR A G++ Q+ YGEDG D
Sbjct: 740  AMGGREGLIDTAIKTAETGYIQRRLVKAMEDATVRLDGSVRGATGNVYQYLYGEDGFD 797


>gi|398409068|ref|XP_003855999.1| DNA-directed RNA polymerase III subunit RPO31 [Zymoseptoria tritici
            IPO323]
 gi|339475884|gb|EGP90975.1| hypothetical protein MYCGRDRAFT_83445 [Zymoseptoria tritici IPO323]
          Length = 1435

 Score =  342 bits (878), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 254/836 (30%), Positives = 392/836 (46%), Gaps = 132/836 (15%)

Query: 405  EIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRI 464
            ++ +P   A+ +TYPERVT  N  KL+  +  G ++HPGA   +      R+     +R+
Sbjct: 334  QVAVPMRVAVNMTYPERVTKHNFEKLKACVRRGDKVHPGANFIVKGRDGRRVV----LRM 389

Query: 465  SIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVL 524
             +G K D  + A        D    G  V RHL+DGD+VL NRQP+LHK SI++H  ++ 
Sbjct: 390  -VGLKGDLKKVA--------DQLEIGDTVERHLEDGDIVLFNRQPSLHKLSILSHRAKI- 439

Query: 525  KGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRS 584
            +  +T R++   C+ YNADFDGDEMN+H PQ E +R EA  ++   +    P NG P+ +
Sbjct: 440  RPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEATELMGVKHNLATPKNGTPIIA 499

Query: 585  LIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLP 644
             IQD I  A L+++KD F NR +F Q +            + G   +  L   +    +P
Sbjct: 500  AIQDFITGAFLISRKDQFFNRRQFNQAVTF---------MYDGLQVKDPLTGETHNIEIP 550

Query: 645  LLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKN 704
              PAIWKP+ LWTGKQ+   ++                  P   +    N          
Sbjct: 551  -APAIWKPQTLWTGKQIWDVLMK-----------------PHRHYPVNVN---------- 582

Query: 705  DKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVR-GV 763
                                  +E K       ++    +  +  +  L+ +N +   G 
Sbjct: 583  ----------------------LEAKLKSFAPPKRKGDIDDMVDSDSYLVIRNSVTMCGG 620

Query: 764  IDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDK 820
             DKA   D     + + +   +G + A   ++ L++L   +L   GF+ G+ D+    DK
Sbjct: 621  FDKATVGDGKKTSVFYVIMRDFGVDYAAAAMTRLAKLSARWLGEQGFSIGISDVYP-SDK 679

Query: 821  ERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMT 880
               RK  L           ++A   +    ID  K K ++E++     +  +      + 
Sbjct: 680  LNLRKKEL-----------VDAAYRQCDEIIDKFK-KGQLERSAGCDEEQTMEILMSGIL 727

Query: 881  SQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKR 940
            S + +    +   EL        +  N    M   G+KGS +N  Q+ + +GQQ + GKR
Sbjct: 728  SAVRQQCGDACFAEL--------SKFNAPLTMAKCGSKGSNINVSQMVAAVGQQIIGGKR 779

Query: 941  VPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRS 1000
            V      +TLP F      P A GF++D F +GL P E+ FH M+GREGLVDTAVKT+ +
Sbjct: 780  VLDGFQDRTLPHFPKASRDPLAKGFVVDSFFSGLSPTEFIFHAMSGREGLVDTAVKTAET 839

Query: 1001 GYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDG---VDVHQTSFISKFD-----A 1052
            GY+ R L+K+LE L   YD +VR++   +VQ  +G+DG   VD+   +    FD     A
Sbjct: 840  GYMSRRLMKSLEDLSAQYDLTVRNSSSGVVQMKFGDDGLDPVDMEGNAKPVNFDRTWMHA 899

Query: 1053 LAAR--ERGRGRGRNKFCDKGSHTFVMGRNQ---------EMIYK----KCSGQLDASNA 1097
            + +      RG  +N+  +    T    R +          + YK    K + QL+ S  
Sbjct: 900  ITSTWDNSERGLTQNEIEEMVHETLDKERAKLVRITDDGLPLPYKDATPKSTDQLEYSRT 959

Query: 1098 YIMELPDALKDNAEKFA----------DKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVG 1147
            ++ ++ + +  +  K            D F  ++ A + FL L   KF  S  + G  VG
Sbjct: 960  FLDDVTNYIFKHVRKLVSSQHRHRGSDDVFKLSQSALECFLYLCLRKFEKSKVEAGHAVG 1019

Query: 1148 LLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
             + +QS+GEP TQMTL TFH AG   M++T G+PR++EI+  ASK I TPVITC L
Sbjct: 1020 AVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN-ASKSISTPVITCAL 1074


>gi|120561166|gb|ABM26978.1| RNA polymerase II largest subunit [Nosema bombycis]
          Length = 982

 Score =  342 bits (877), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 244/778 (31%), Positives = 383/778 (49%), Gaps = 129/778 (16%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
              L V+LVPP   R PS   + ++  E   T  LS ++++N YL   Y  +     +I  
Sbjct: 130  LILTVLLVPPPSVR-PSIVMEGMLRAEDDLTHKLSDIIKSNTYLKK-YEMEGAPGHIIRD 187

Query: 340  RWMNLQQSVNVLFDGKNAAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYAC 391
                LQ  V  L D  + +GQ        R + S I   L+ KEG  R  LMGKRV+++ 
Sbjct: 188  YEQLLQFHVATLID-NDISGQPQALQKSGRPLKS-ISARLKGKEGRVRGNLMGKRVDFSA 245

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            RSVI+ D  +++ E+G+P   A   T+PE++TP+N+ KL   + NG   +PGA +Y+ + 
Sbjct: 246  RSVITADANISLEEVGVPLEVAKIHTFPEKITPFNIEKLEKLVANGPNEYPGA-NYVIRT 304

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
               R+             L+ +RG I           EG +V RH+Q+GD +L NRQP+L
Sbjct: 305  DGQRI------------DLNFNRGDIKLE--------EGYIVERHMQNGDTILFNRQPSL 344

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK S+M H VRV++G KT R++ +  S YNADFDGDEMN+H PQ+  S AE   I     
Sbjct: 345  HKMSMMGHKVRVMEG-KTFRLNLSVTSPYNADFDGDEMNLHMPQNYNSIAELEEICMVPK 403

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSS---GLGSFTGK 628
            Q + P +  P+  ++QD +      T +D F +++E  Q+LYS         GL S   K
Sbjct: 404  QILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNEMMQVLYSIDFDKYYDIGLDSVI-K 462

Query: 629  PGQRVLISRSEQEVLPLL--PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQ 686
             G+++ +   E  ++ LL  PAI KP+ LWTGKQ+++ +                   P 
Sbjct: 463  KGKKLDMGAKEYSLMGLLSKPAIQKPKQLWTGKQILSFI------------------FPN 504

Query: 687  DFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKE 746
             F+K   N  +++D +                                            
Sbjct: 505  VFYKNSSNESRENDLEN------------------------------------------- 521

Query: 747  LSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFL-Q 803
            +S+  ++I   +++ G+IDK        GLVH +   +G +     +  + ++ T FL  
Sbjct: 522  VSDTSVVICGGEIMSGIIDKKAVGATQGGLVHIIANDFGCSRVTLFIDDIQKIITKFLMN 581

Query: 804  MHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            +H F+ G+ D +   D  +  K  +  S++                 +D I  K++  + 
Sbjct: 582  IHVFSMGIGDTVADSDTLKYVKQAIEKSKD----------------SVDEIIRKAQNNRL 625

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK-NWISLMTTSGAKGSKV 922
             R  G      F+ ++   LNK    S           K   K N +  M  SG+KGS +
Sbjct: 626  DRLPGMTMKESFESQVNYVLNKARDVS------GTSTQKSLNKCNNMKAMVLSGSKGSFI 679

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  Q+++ +GQQ +EGKR+P   + +TLP F   D++ ++ GF+ + +L+GL P+E++FH
Sbjct: 680  NISQVTACVGQQNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFH 739

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             M GREGL+DTA+KT+ +GY+QR L+K +E   +  D SVR A G++ Q+ YGEDG D
Sbjct: 740  AMGGREGLIDTAIKTAETGYIQRRLVKAMEDATVRLDGSVRGATGNVYQYLYGEDGFD 797


>gi|221486415|gb|EEE24676.1| DNA-directed RNA polymerase II largest subunit, putative [Toxoplasma
            gondii GT1]
 gi|221508191|gb|EEE33778.1| DNA-directed RNA polymerase II largest subunit, putative [Toxoplasma
            gondii VEG]
          Length = 1892

 Score =  342 bits (877), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 253/818 (30%), Positives = 398/818 (48%), Gaps = 144/818 (17%)

Query: 246  DVKDIIEKLW--ENEFELCSFIS--DMQQQGFGKKAGH-SIFFLGVVLVPPIKFRLPSKG 300
            DV + I +++  E  + +   IS  D++  GF  +  H + F L  + +PP+  R   + 
Sbjct: 202  DVTEDIRRIFAAEEAYAVLRRISEEDLKMMGFDPERAHPASFILSTLPIPPLAVRPSVQY 261

Query: 301  GDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDG------ 354
            G +  E   T+ L  +++ N+ L     + P  + V+    M LQ  V  LFD       
Sbjct: 262  GSARSEDDLTLKLVDIVKTNLSLKRQGDSVP--SAVLQEMVMLLQYHVTTLFDNDIPGMP 319

Query: 355  -KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
                 G++ + S I   L+ KEG  R  LMGKRV+++ R+VI+ DP L ++ +G+P   A
Sbjct: 320  VATTRGKKPIKS-IRARLKGKEGRLRGNLMGKRVDFSARTVITGDPMLPIDTVGVPKSIA 378

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTS 473
            + LTYPE VTP N+ +LR  +  G    PGA + +                    + D S
Sbjct: 379  MTLTYPEFVTPLNIGQLRQLVKTGPFDWPGAKYVI--------------------RDDGS 418

Query: 474  RGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 532
            R  +    K  +   E G  V RH++DGD VL NRQP+LHK SIM H V++L    T R+
Sbjct: 419  RFDLRHAKKGGEVVLEVGYRVERHMRDGDFVLFNRQPSLHKMSIMGHQVKILP-YSTFRL 477

Query: 533  HYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVS 592
            + +  S YNADFDGDEMN+H  Q E +RAE  +++    Q V P    P+  ++QD +++
Sbjct: 478  NLSVTSPYNADFDGDEMNLHLAQSEETRAEIKHLMKVPKQIVSPQGNKPVMGIVQDSLLA 537

Query: 593  AALLTKKDTFLNR----DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPA 648
             +  T++DTFL +    +   Q+ Y SGV                        V P  PA
Sbjct: 538  VSKFTRRDTFLTKPMVYNLLLQIPYWSGV------------------------VPP--PA 571

Query: 649  IWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
            I  P PLWTGKQ+ + +L                     FF +  +         N K +
Sbjct: 572  ILHPVPLWTGKQLFSLLL---------------------FFDSSVSGG-------NTKTR 603

Query: 709  LSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSE--EKLLIYKNDLVRGVIDK 766
            ++    +      +KKE +                   LSE  E+++I + +L+ G I K
Sbjct: 604  INMQRDVGAGLVDRKKENL------------------FLSERDERVIIRQGELLAGKICK 645

Query: 767  AQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                 A   L+H +    G       LS L +L   +L   GFT G  D++  ++   + 
Sbjct: 646  KIVGSASGSLIHLLWLEAGPERTKDFLSTLQKLTNYWLLHQGFTVGCKDIIANEETNEKV 705

Query: 825  KNHL-HGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQL 883
            ++ L    +E+ K + L              +L+S+  K++R         F+ ++  +L
Sbjct: 706  RDILDQAKKEVDKLIRLAHRG----------RLESQPGKSLRES-------FEARVNKEL 748

Query: 884  N--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRV 941
            N  +  S  V  E L E        N I  M  +G+KGS +N  QI + +GQQ +EGKR+
Sbjct: 749  NSARERSGKVAAESLDE-------SNNIMAMVLAGSKGSTINISQIMACVGQQNVEGKRI 801

Query: 942  PRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSG 1001
            P   + ++LP FH +D++P++ GF+ + +L+GL P E +FH M GREG++DTA KTS +G
Sbjct: 802  PFGFNERSLPHFHKFDYSPQSRGFVENSYLSGLEPHELFFHAMGGREGIIDTACKTSETG 861

Query: 1002 YLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            Y+QR L+K +E + + YD +VR++   ++QF YGEDG+
Sbjct: 862  YIQRRLMKAMEDVMVYYDRTVRNSICEVLQFLYGEDGM 899



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 8/131 (6%)

Query: 1080 NQEMIYKKCSGQLDASNAYIMELPDALKD-------NAEKFADKFLSNEMAKQDFLKLVK 1132
            N++++  K +   DA +A + E              N+ +  ++      A Q  L  V+
Sbjct: 1021 NEKLVVVKQTTNADAISAEVQENATIFMKAHLRTVLNSRRLLERECIGPKALQWLLGEVE 1080

Query: 1133 HKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASK 1192
              F  +LA  GE VG +A+QS+GEP+TQMTLNTFH AG G  NVTLG+PRL+E++ +A K
Sbjct: 1081 RHFHRALAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVA-K 1139

Query: 1193 DIKTPVITCPL 1203
             +KTP +T  L
Sbjct: 1140 QVKTPSLTVYL 1150



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TC      CPGHFGH++LV PVY+      +  +L+ +C+ C      RR+
Sbjct: 70  CRTCNMDVKNCPGHFGHLNLVKPVYHYGFLGAVLRVLRCVCYACGKLLVDRRD 122


>gi|405121486|gb|AFR96255.1| DNA-directed RNA polymerase III largest subunit [Cryptococcus
            neoformans var. grubii H99]
          Length = 1437

 Score =  342 bits (877), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 256/809 (31%), Positives = 402/809 (49%), Gaps = 122/809 (15%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPP--IKFRLPSK 299
            L P  V ++ E++   + EL S   D+ +           +    + VPP  I+  + S+
Sbjct: 226  LNPLKVLNLFERITAEDCELLSLHPDVGRP--------EDYIWQYISVPPPCIRPSVASE 277

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G++  E   T  L++++  N  LA   ++     ++I + W  L Q+V  L+    A G
Sbjct: 278  AGNN--EDDLTAKLAEIVNYNNTLA-LMMDLGRGIEMISSNWEVLGQAV-ALYINSQAPG 333

Query: 360  QRDMAS----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALR 415
             + + S    G  Q L+ K+G FR  L GKRV+++ R+VI PDP L ++E+ +P   A++
Sbjct: 334  MQTIGSKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVIGPDPNLRIDEVAVPEKVAVK 393

Query: 416  LTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRG 475
            L+YPERVT +N+  +R +IING+++HPGA     K           +RIS+    D    
Sbjct: 394  LSYPERVTDYNIQLMRQAIINGSKLHPGANVLERKHEN-----GSTVRISLNVMKD---- 444

Query: 476  AIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY 534
              ++  K    E + G +V+RH++DGD+VL NRQP+LHK SIM H VRV +  +T R++ 
Sbjct: 445  --LEARKRYARELQIGDVVHRHVRDGDIVLFNRQPSLHKLSIMCHRVRV-RPWRTFRLNE 501

Query: 535  ANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAA 594
              C+ YNADFDGDEMN+H PQ E +R EA  +++     V P NG+P+ + IQD I +A 
Sbjct: 502  CVCNPYNADFDGDEMNLHVPQTEEARTEALELMSVKKNLVTPRNGEPIIAAIQDFITAAY 561

Query: 595  LLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEP 654
            LL+++D F +R +F Q           + S+ G    ++       E+ P  P IWKP  
Sbjct: 562  LLSRRDRFYDRQQFTQ-----------IASYLGDANLKI-------EMPP--PTIWKPVR 601

Query: 655  LWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNK 714
            LWTGKQ+   ++      RP                                   +K +K
Sbjct: 602  LWTGKQIFNLLM------RP-----------------------------------NKESK 620

Query: 715  MHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--- 771
            +  +   K + +V+  P +E     + S     ++  L+I  ++++ GV DK    D   
Sbjct: 621  VLVNLEAKCRTLVD--PAKEDRFPPDMSP----NDGYLVIQNSEIMCGVFDKNTVGDGKK 674

Query: 772  YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGS 831
              +   +   YG   A   ++ L+++   +L   GF+ G++D++            LH S
Sbjct: 675  NSVFGVILRDYGPEEAAQAMNRLAKIAARWLANIGFSLGINDVI--------PGPILHAS 726

Query: 832  EEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSV 891
                K   +E    E    ID  K K ++E A     +A +     K  S + +      
Sbjct: 727  ----KDARVEKAYDECDVFIDLAK-KGKLENAPGCDQEATLESKISKTLSDVREAVGKIC 781

Query: 892  INELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLP 951
            + EL        +  N   +M T G+KGS +N  Q+ + +GQQ + G RV      ++LP
Sbjct: 782  MQEL--------SRHNAPLIMATCGSKGSVINVAQMVACVGQQIIGGSRVRNGFQDRSLP 833

Query: 952  SFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 1011
             F      P + GF+ + F +GL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K L
Sbjct: 834  HFRKKSKNPPSKGFVRNSFFSGLTPPEFLFHAMSGREGLVDTAVKTAETGYMARRLMKAL 893

Query: 1012 ECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            E L   YD SVR++ G IVQF YG+D +D
Sbjct: 894  EDLCTHYDLSVRNSVGGIVQFQYGDDMLD 922



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 85/143 (59%), Gaps = 8/143 (5%)

Query: 1070 KGSHTFVMGR-NQEMIYKKCS-GQLDASNAYIMELPDALKDNAEKFADKFLSN-----EM 1122
            + ++ FV+ +  ++M+ ++ + G  DA +  + E  +AL ++ +    + L N     E 
Sbjct: 1014 ENTYKFVVDKIVKQMVDQRLARGLPDADDVEMAEEYEALLNSDDLAVQRVLENANKVTEA 1073

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
                FL+  + +++ +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR
Sbjct: 1074 QLSSFLENCRIRYLRAKIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPR 1133

Query: 1183 LQEILTIASKDIKTPVITCPLLV 1205
            ++EI+  A+K I TP+I   L +
Sbjct: 1134 IKEIIN-AAKVISTPIIAAELAI 1155



 Score = 43.5 bits (101), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TCG+    C GH+G+I LV+PV++   F     +L  IC  C
Sbjct: 79  CATCGEDTQKCVGHYGYIKLVLPVFHIGYFRPTINMLSCICKTC 122


>gi|255717220|ref|XP_002554891.1| KLTH0F16236p [Lachancea thermotolerans]
 gi|238936274|emb|CAR24454.1| KLTH0F16236p [Lachancea thermotolerans CBS 6340]
          Length = 1460

 Score =  342 bits (876), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 234/723 (32%), Positives = 358/723 (49%), Gaps = 118/723 (16%)

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVN-VLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLM 383
            N  + Q D  ++ VA ++N   SVN  +  G +  G+     G CQ L+ K+G FR  L 
Sbjct: 310  NNMMEQWDYLQLAVAMYIN-SDSVNPAMMPGGSTGGKTKPIRGFCQRLKGKQGRFRGNLS 368

Query: 384  GKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPG 443
            GKRV+++ R+V+SPDP L+++E+ +P   A  LTYPE VT +N  KL+  +ING   HPG
Sbjct: 369  GKRVDFSGRTVVSPDPNLSIDEVAVPDRVAKVLTYPEMVTRYNKQKLQQLVINGPNEHPG 428

Query: 444  ATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVV 503
            A + L K    R       R+ + R L                   G +V RHL+DGDVV
Sbjct: 429  ANYLLKKDEEARRNLRYGDRMKLARNLQY-----------------GDVVERHLEDGDVV 471

Query: 504  LVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEA 563
            L NRQP+LH+ SI++H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA
Sbjct: 472  LFNRQPSLHRLSILSHYAKI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEA 530

Query: 564  YNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLG 623
             N++   N  + P +G+P+ +  QD I  + L++ KD+F +R EF QLL    + S G  
Sbjct: 531  INLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFSRAEFVQLL---SMMSDGNL 587

Query: 624  SFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGK 683
             F   P                 P+I KP  +WTGKQV + ++      RP         
Sbjct: 588  QFDIPP-----------------PSIMKPYYMWTGKQVFSLLI------RP--------- 615

Query: 684  LPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMH---KDKSGKKKEVVEGKPGEEKEAEKN 740
                        +K+S    N    L   NK++   KDKS                    
Sbjct: 616  ------------NKESPVVIN----LDAKNKVYIPPKDKS-------------------- 639

Query: 741  KSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRL 797
               E  +++  ++I  + ++ GV+DK+   D   + + +T+   +G   A   ++ +++L
Sbjct: 640  LPNEMSINDGYVVIRGSKILSGVMDKSVLGDGKKHSVFYTILRDFGPQEAAFAMNRMAKL 699

Query: 798  FTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLK 857
               FL   GF+ G++D  +    E + K  +   +   K   L  L  +   E  P   +
Sbjct: 700  CARFLGNRGFSIGIND--VTPGFELKNKKEIMVEDAYAKCDALIDLFNKGKLETQPGCNE 757

Query: 858  SEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGA 917
             +  +A  GG           + S++ +      I EL           N   +M   G+
Sbjct: 758  EQTLEAKIGG-----------LLSKVREEVGEVCIKEL--------DNLNSCLIMANCGS 798

Query: 918  KGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQ 977
            KGS +N  Q+ + +GQQ + G RVP     ++LP F      P++ GF+ + F +GL P 
Sbjct: 799  KGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFLKNSKTPQSKGFVRNSFFSGLSPP 858

Query: 978  EYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGED 1037
            E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD ++R +   IVQF YG D
Sbjct: 859  EFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTIRTSSNGIVQFTYGGD 918

Query: 1038 GVD 1040
            G+D
Sbjct: 919  GLD 921



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 53/78 (67%), Gaps = 1/78 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            FL++   K+  +  +PG  VG + + S+GEP TQMTL TFH AG   MNVTLG+PR++EI
Sbjct: 1069 FLEIAIFKYHKAKVEPGTAVGAVGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI 1128

Query: 1187 LTIASKDIKTPVITCPLL 1204
            +  ASK I TP+I   L+
Sbjct: 1129 IN-ASKVISTPIINAVLV 1145



 Score = 42.0 bits (97), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 29/61 (47%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC      C GHFGHI L +PV++   F     +L+ IC  C     S  +  + + +
Sbjct: 67  CSTCHGNLASCHGHFGHIKLSLPVFHVGYFKATIQVLQSICKTCAALLLSEEDKHQFLSE 126

Query: 61  L 61
           L
Sbjct: 127 L 127


>gi|50293727|ref|XP_449275.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528588|emb|CAG62249.1| unnamed protein product [Candida glabrata]
          Length = 1459

 Score =  341 bits (875), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 239/755 (31%), Positives = 376/755 (49%), Gaps = 124/755 (16%)

Query: 298  SKGGDSVMEHPQTVLLSKVLQANI---YLANAYVNQPDNAKVIVARWMNLQQSVN--VLF 352
            S   D  ++  + V  S +++A I      N  +   D  ++ VA ++N   S+N  +L 
Sbjct: 280  SNEDDLTVKLTEIVWTSSLIKAGIEKGISINNMMEHWDYLQMTVAMYIN-SDSINPAMLP 338

Query: 353  DGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYF 412
                  G+     G CQ L+ K+G FR  L GKRV+++ R+VISPDP L+++E+ +P   
Sbjct: 339  GSSTGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPQLV 398

Query: 413  ALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDT 472
            A  LT+PE+VT +N+ KLR  + NG  +HPGA + L K    R    + +R    +KL  
Sbjct: 399  AKVLTFPEKVTRYNIKKLRQLVQNGPNVHPGANYLLKKNEEAR----RNLRYGDRQKL-- 452

Query: 473  SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 532
                       ++N   G +V RHL+DGDVVL NRQP+LH+ SI++H  ++ +  +T R+
Sbjct: 453  -----------ANNLQYGDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKI-RPWRTFRL 500

Query: 533  HYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVS 592
            +   C+ YNADFDGDEMN+H PQ E +RAEA N++   N  + P +G+P+ +  QD I  
Sbjct: 501  NECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITG 560

Query: 593  AALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKP 652
            + L++ KD+F ++    QLL    + S G   F   P                 PAI KP
Sbjct: 561  SYLISHKDSFFDKASLTQLL---SMMSDGSLQFDIPP-----------------PAIMKP 600

Query: 653  EPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKT 712
              LWTGKQV                           F      +K S  K N    L   
Sbjct: 601  CYLWTGKQV---------------------------FSLLIKPNKNSPVKIN----LDAK 629

Query: 713  NKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEK--LLIYKNDLVRGVIDKAQFA 770
            NK++                      K K    E+S+    +++  + ++ GV+DK+   
Sbjct: 630  NKVYI-------------------PPKQKHYPNEMSQNDGFVIVRGSQILSGVMDKSVLG 670

Query: 771  D---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNH 827
            D   + + +T+   +G   A + ++ +++L   +L   GF+ G+ D+    D ++++++ 
Sbjct: 671  DGKKHSVFYTILRDFGPQEAASAMNRMAKLCARYLGNRGFSIGISDVTPADDLKQKKEDL 730

Query: 828  LHGSEEIGKRVHLEALELEDGA--EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNK 885
            +    EI      E ++L +    E  P   + +  +A  GG           + S++ +
Sbjct: 731  V----EIAYAKCDELIDLYNKGKLETQPGCNEEQTLEAKIGG-----------LLSKVRE 775

Query: 886  HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMV 945
                  INEL  + L  P       +M T G+KGS +N  Q+ + +GQQ + G RVP   
Sbjct: 776  EVGDVCINEL--DNLNAPL------IMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGF 827

Query: 946  SGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQR 1005
              ++LP F      P++ GF+ + F +GL P E+ FH ++GREGLVDTAVKT+ +GY+ R
Sbjct: 828  QDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSR 887

Query: 1006 CLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             L+K+LE L   YD +VR +   IVQF YG DG+D
Sbjct: 888  RLMKSLEDLSCQYDNTVRTSSNGIVQFTYGGDGLD 922



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 57/84 (67%), Gaps = 1/84 (1%)

Query: 1121 EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGI 1180
            E A Q FL++   K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+
Sbjct: 1063 EDAVQKFLEIAISKYHRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGV 1122

Query: 1181 PRLQEILTIASKDIKTPVITCPLL 1204
            PR++EI+  ASK I TP+I   L+
Sbjct: 1123 PRIKEIIN-ASKVISTPIINAVLV 1145



 Score = 42.4 bits (98), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C TC      C GHFGHI L +PV++   F     +L+ IC  C     S ++
Sbjct: 67  CTTCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQGICKTCSAILLSEQD 119


>gi|401409792|ref|XP_003884344.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
            caninum Liverpool]
 gi|325118762|emb|CBZ54313.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
            caninum Liverpool]
          Length = 1901

 Score =  341 bits (875), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 252/818 (30%), Positives = 399/818 (48%), Gaps = 144/818 (17%)

Query: 246  DVKDIIEKLW--ENEFELCSFIS--DMQQQGFGKKAGH-SIFFLGVVLVPPIKFRLPSKG 300
            DV + I +++  E  + +   IS  D++  GF  +  H + F L  + +PP+  R   + 
Sbjct: 202  DVAEDIRRIFAAEEAYTVLRRISEDDLKMMGFDPERAHPASFILSTLPIPPLAVRPSVQY 261

Query: 301  GDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDG------ 354
            G +  E   T+ L  +++ N+ L     + P  + V+    M LQ  V  LFD       
Sbjct: 262  GSARSEDDLTLKLVDIVKTNLSLKRQGDSVP--SAVLQEMVMLLQYHVTTLFDNDIPGMP 319

Query: 355  -KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
                 G++ + S I   L+ KEG  R  LMGKRV+++ R+VI+ DP L ++ +G+P   A
Sbjct: 320  VATTRGKKPIKS-IRARLKGKEGRLRGNLMGKRVDFSARTVITGDPMLPIDTVGVPKSIA 378

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTS 473
            + LTYPE VTP N+ +LR  +  G    PGA + +                    + D S
Sbjct: 379  MTLTYPEFVTPLNIGQLRQLVKTGPFDWPGAKYVI--------------------RDDGS 418

Query: 474  RGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 532
            R  +    K  +   E G  V RH++DGD VL NRQP+LHK SIM H V++L    T R+
Sbjct: 419  RFDLRHAKKGGEVVLEVGYRVERHMRDGDFVLFNRQPSLHKMSIMGHQVKILP-YSTFRL 477

Query: 533  HYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVS 592
            + +  S YNADFDGDEMN+H  Q E +RAE  +++    Q V P    P+  ++QD +++
Sbjct: 478  NLSVTSPYNADFDGDEMNLHLAQSEETRAEIKHLMKVPKQIVSPQGNKPVMGIVQDSLLA 537

Query: 593  AALLTKKDTFLNR----DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPA 648
             +  T++DTFL +    +   Q+ Y SGV                        V P  PA
Sbjct: 538  VSKFTRRDTFLTKPMVYNILLQIPYWSGV------------------------VPP--PA 571

Query: 649  IWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
            I +P PLWTGKQ+ + +L                     FF +  +         N K +
Sbjct: 572  IVRPVPLWTGKQLFSLLL---------------------FFDSSVSGG-------NTKTR 603

Query: 709  LSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSE--EKLLIYKNDLVRGVIDK 766
            ++    +      +KKE +                   +SE  E+++I + +L+ G I K
Sbjct: 604  INMQRDVGAGLVDRKKENL------------------FISERDERVIIRQGELLAGKICK 645

Query: 767  AQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                 A   L+H +    G       LS L +L   +L   GFT G  D++  ++   + 
Sbjct: 646  KIVGSASGSLIHLLWLEAGPERTKDFLSTLQKLTNYWLLHQGFTVGCKDIIANEETNEKV 705

Query: 825  KNHL-HGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQL 883
            ++ L    +E+ K + L              +L+S+  K++R         F+ ++  +L
Sbjct: 706  RDILDQAKKEVDKLIRLAHRG----------RLESQPGKSLRES-------FEARVNKEL 748

Query: 884  N--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRV 941
            N  +  S  V  E L E        N I  M  +G+KGS +N  QI + +GQQ +EGKR+
Sbjct: 749  NSARERSGKVAAESLDE-------SNNIMAMVLAGSKGSTINISQIMACVGQQNVEGKRI 801

Query: 942  PRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSG 1001
            P   + ++LP FH +D++P++ GF+ + +L+GL P E +FH M GREG++DTA KTS +G
Sbjct: 802  PFGFNERSLPHFHKFDYSPQSRGFVENSYLSGLEPHELFFHAMGGREGIIDTACKTSETG 861

Query: 1002 YLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            Y+QR L+K +E + + YD +VR++   ++QF YGEDG+
Sbjct: 862  YIQRRLMKAMEDVMVYYDRTVRNSICEVLQFLYGEDGM 899



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 1/95 (1%)

Query: 1109 NAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHL 1168
            N+ +  ++      A Q  L  V+ +F  +LA  GE VG +A+QS+GEP+TQMTLNTFH 
Sbjct: 1057 NSRRLLERERVGPKALQWLLGEVERQFHRALAHAGECVGAIAAQSIGEPATQMTLNTFHF 1116

Query: 1169 AGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            AG G  NVTLG+PRL+E++ +A K +KTP +T  L
Sbjct: 1117 AGVGSKNVTLGVPRLKELINVA-KQVKTPSLTVYL 1150



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TC      CPGHFGH++LV PVY+      +  +L+ +C+ C      RR+
Sbjct: 70  CRTCNMDVKNCPGHFGHLNLVKPVYHYGFLGAVLRVLRCVCYACGKLLVDRRD 122


>gi|367030511|ref|XP_003664539.1| hypothetical protein MYCTH_2307483 [Myceliophthora thermophila ATCC
            42464]
 gi|347011809|gb|AEO59294.1| hypothetical protein MYCTH_2307483 [Myceliophthora thermophila ATCC
            42464]
          Length = 1555

 Score =  341 bits (875), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 244/771 (31%), Positives = 378/771 (49%), Gaps = 122/771 (15%)

Query: 281  IFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
            +F    V  PPI  R      ++  E   T  LS+++    +L  + + +     VI+ +
Sbjct: 264  MFLWQYVPAPPICIRPSVAQENASNEDDITSKLSEIILYAGHLRES-LKKGVALPVIMEQ 322

Query: 341  WMNLQQSVNVLFD----GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            W  LQ  V +  +    G    G      G CQ L+ K+G FR  L GKRV+++ R+VIS
Sbjct: 323  WEFLQLQVGMYVNSDVPGLYQPGFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVIS 382

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PDP L++ ++ +P   A  LTYPERV   N+ KLR+ +ING  I PGA   + K      
Sbjct: 383  PDPNLSIEQVAVPQLVAKNLTYPERVNHANIEKLRERVINGPNIWPGAQGIIKK------ 436

Query: 457  PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
                K  + IG +    + A       S  EF G +V RHL+D D+VL NRQP+LHK SI
Sbjct: 437  -DGAKYNLKIGTESLRQKHA-------SSLEF-GDVVERHLEDNDIVLFNRQPSLHKLSI 487

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            M+H+V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA N++   N  + P
Sbjct: 488  MSHLVKV-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLITP 546

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
             NG+P+ +  QD I +A LL+ KD F +R  F  +                    ++L+ 
Sbjct: 547  KNGEPIIAATQDFITAAYLLSSKDRFFDRTSFTYIC------------------TQMLLG 588

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
             +  E+ P  PAI KP  LWTGKQ+   ++      RP                     +
Sbjct: 589  DTHLELPP--PAILKPRALWTGKQIFNVLM------RP---------------------N 619

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
            K+S    N    L   NK++K K                  +  +  + ++ +  L++  
Sbjct: 620  KESPVLVN----LDAKNKVYKPK------------------KDGQIPDMDIDDSFLVVRN 657

Query: 757  NDLVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDD 813
            ++++ G +DK+         + + +   +G + A   ++ L++L    L + GF+ GV D
Sbjct: 658  SEVMCGRMDKSTVGGGKKNSVFYVILRDFGPDHAAAAMNRLAKLCARTLTLRGFSIGVGD 717

Query: 814  LL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGD 869
            +     + K K R  +      +++ +      LE   G       L+  +E ++ G   
Sbjct: 718  VWPSTSLTKHKARLVEEAYKKCDDLIETYRQGKLEKAPGC-----NLEETLENSISG--- 769

Query: 870  AAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISS 929
                     + S++ +      +N L        +  N   +M  SG+KGS +N  Q+ +
Sbjct: 770  ---------ILSKVRQQAGDYCVNNL--------SNNNAPLIMAKSGSKGSDINVAQMVA 812

Query: 930  HLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREG 989
             +GQQ + GKRVP     ++LP FH     P + GF+ + F TGL P E+ FH ++GREG
Sbjct: 813  CVGQQIIGGKRVPDGFQDRSLPHFHKNARQPPSKGFVRNSFYTGLVPTEFLFHAISGREG 872

Query: 990  LVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            LVDTAVKT+ +GY+ R L+K+LE L   YD +VR ++G IVQF YG D +D
Sbjct: 873  LVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSEGGIVQFQYGADRLD 923



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 73/130 (56%), Gaps = 15/130 (11%)

Query: 1082 EMIYKKCSGQLDASN--------AYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKH 1133
            E + K    +LD  N        A IM    A  D   K +++ L      + F+++  H
Sbjct: 1078 EYVLKDLRRKLDEENELDEASRQARIMAAAQAHVDRVAKVSERTL------RQFIQMCLH 1131

Query: 1134 KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKD 1193
            K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   M++T G+PR++EI+  ASK 
Sbjct: 1132 KYKKARVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIIN-ASKL 1190

Query: 1194 IKTPVITCPL 1203
            I TPVITC L
Sbjct: 1191 ISTPVITCEL 1200


>gi|237833803|ref|XP_002366199.1| DNA-directed RNA polymerase II largest subunit, putative [Toxoplasma
            gondii ME49]
 gi|211963863|gb|EEA99058.1| DNA-directed RNA polymerase II largest subunit, putative [Toxoplasma
            gondii ME49]
          Length = 1892

 Score =  341 bits (875), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 253/818 (30%), Positives = 397/818 (48%), Gaps = 144/818 (17%)

Query: 246  DVKDIIEKLW--ENEFELCSFIS--DMQQQGFGKKAGH-SIFFLGVVLVPPIKFRLPSKG 300
            DV + I +++  E  + +   IS  D++  GF  +  H + F L  + +PP+  R   + 
Sbjct: 202  DVTEDIRRIFAAEEAYAVLRRISEEDLKMMGFDPERAHPASFILSTLPIPPLAVRPSVQY 261

Query: 301  GDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDG------ 354
            G +  E   T+ L  +++ N+ L     + P    V+    M LQ  V  LFD       
Sbjct: 262  GSARSEDDLTLKLVDIVKTNLSLKRQGDSVP--GAVLQEMVMLLQYHVTTLFDNDIPGMP 319

Query: 355  -KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
                 G++ + S I   L+ KEG  R  LMGKRV+++ R+VI+ DP L ++ +G+P   A
Sbjct: 320  VATTRGKKPIKS-IRARLKGKEGRLRGNLMGKRVDFSARTVITGDPMLPIDTVGVPKSIA 378

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTS 473
            + LTYPE VTP N+ +LR  +  G    PGA + +                    + D S
Sbjct: 379  MTLTYPEFVTPLNIGQLRQLVKTGPFDWPGAKYVI--------------------RDDGS 418

Query: 474  RGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 532
            R  +    K  +   E G  V RH++DGD VL NRQP+LHK SIM H V++L    T R+
Sbjct: 419  RFDLRHAKKGGEVVLEVGYRVERHMRDGDFVLFNRQPSLHKMSIMGHQVKILP-YSTFRL 477

Query: 533  HYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVS 592
            + +  S YNADFDGDEMN+H  Q E +RAE  +++    Q V P    P+  ++QD +++
Sbjct: 478  NLSVTSPYNADFDGDEMNLHLAQSEETRAEIKHLMKVPKQIVSPQGNKPVMGIVQDSLLA 537

Query: 593  AALLTKKDTFLNR----DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPA 648
             +  T++DTFL +    +   Q+ Y SGV                        V P  PA
Sbjct: 538  VSKFTRRDTFLTKPMVYNLLLQIPYWSGV------------------------VPP--PA 571

Query: 649  IWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
            I  P PLWTGKQ+ + +L                     FF +  +         N K +
Sbjct: 572  ILHPVPLWTGKQLFSLLL---------------------FFDSSVSGG-------NTKTR 603

Query: 709  LSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSE--EKLLIYKNDLVRGVIDK 766
            ++    +      +KKE +                   LSE  E+++I + +L+ G I K
Sbjct: 604  INMQRDVGAGLVDRKKENL------------------FLSERDERVIIRQGELLAGKICK 645

Query: 767  AQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                 A   L+H +    G       LS L +L   +L   GFT G  D++  ++   + 
Sbjct: 646  KIVGSASGSLIHLLWLEAGPERTKDFLSTLQKLTNYWLLHQGFTVGCKDIIANEETNEKV 705

Query: 825  KNHL-HGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQL 883
            ++ L    +E+ K + L              +L+S+  K++R         F+ ++  +L
Sbjct: 706  RDILDQAKKEVDKLIRLAHRG----------RLESQPGKSLRES-------FEARVNKEL 748

Query: 884  N--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRV 941
            N  +  S  V  E L E        N I  M  +G+KGS +N  QI + +GQQ +EGKR+
Sbjct: 749  NSARERSGKVAAESLDE-------SNNIMAMVLAGSKGSTINISQIMACVGQQNVEGKRI 801

Query: 942  PRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSG 1001
            P   + ++LP FH +D++P++ GF+ + +L+GL P E +FH M GREG++DTA KTS +G
Sbjct: 802  PFGFNERSLPHFHKFDYSPQSRGFVENSYLSGLEPHELFFHAMGGREGIIDTACKTSETG 861

Query: 1002 YLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            Y+QR L+K +E + + YD +VR++   ++QF YGEDG+
Sbjct: 862  YIQRRLMKAMEDVMVYYDRTVRNSICEVLQFLYGEDGM 899



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 8/131 (6%)

Query: 1080 NQEMIYKKCSGQLDASNAYIMELPDALKD-------NAEKFADKFLSNEMAKQDFLKLVK 1132
            N++++  K +   DA +A + E              N+ +  ++      A Q  L  V+
Sbjct: 1021 NEKLVVVKQTTNADAISAEVQENATIFMKAHLRTVLNSRRLLERECIGPKALQWLLGEVE 1080

Query: 1133 HKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASK 1192
              F  +LA  GE VG +A+QS+GEP+TQMTLNTFH AG G  NVTLG+PRL+E++ +A K
Sbjct: 1081 RHFHRALAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVA-K 1139

Query: 1193 DIKTPVITCPL 1203
             +KTP +T  L
Sbjct: 1140 QVKTPSLTVYL 1150



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TC      CPGHFGH++LV PVY+      +  +L+ +C+ C      RR+
Sbjct: 70  CRTCNMDVKNCPGHFGHLNLVKPVYHYGFLGAVLRVLRCVCYACGKLLVDRRD 122


>gi|367014307|ref|XP_003681653.1| hypothetical protein TDEL_0E01990 [Torulaspora delbrueckii]
 gi|359749314|emb|CCE92442.1| hypothetical protein TDEL_0E01990 [Torulaspora delbrueckii]
          Length = 1460

 Score =  341 bits (874), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 233/727 (32%), Positives = 366/727 (50%), Gaps = 125/727 (17%)

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVN--VLFDGKNAAGQRDMASGICQLLEKKEGLFRQKL 382
            N  +   D  ++ VA ++N   SVN  ++    +  G+     G CQ L+ K+G FR  L
Sbjct: 310  NNMMEHWDYLQLSVAMYIN-SDSVNPAMMPGASSGGGKVKPIRGFCQRLKGKQGRFRGNL 368

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
             GKRV+++ R+VISPDP L+++E+ +P   A  LTYPE+VT +N  KL+  +ING  +HP
Sbjct: 369  SGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRQKLQQLLINGPNVHP 428

Query: 443  GATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDV 502
            GA + L K    R       R+ + + L                   G +V RHL+DGDV
Sbjct: 429  GANYLLKKDEDARRNLRYGDRVKLAKNLRV-----------------GDVVERHLEDGDV 471

Query: 503  VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
            VL NRQP+LH+ SI++H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAE
Sbjct: 472  VLFNRQPSLHRLSILSHYAKI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAE 530

Query: 563  AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL 622
            A N++   N  + P +G+P+ +  QD I  + L++ KD+F +R    QLL  S +S   L
Sbjct: 531  AINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRGSLTQLL--SMMSDGNL 588

Query: 623  GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGG 682
                             Q  +P  PAI KP  LWTGKQV + ++      + P V+    
Sbjct: 589  -----------------QFDIP-APAIMKPCYLWTGKQVFSLLIK--PNKKSPVVI---- 624

Query: 683  KLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKS 742
                       N D                         K K  +  K         +KS
Sbjct: 625  -----------NLD------------------------AKNKVFIPPK---------SKS 640

Query: 743  KEKELSEEK--LLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRL 797
               E+S+    ++I  ++++ GV+DK+   D   + + +T+   YG   A   ++ +++L
Sbjct: 641  LPSEMSQNDGYVIIRGSEILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKL 700

Query: 798  FTVFLQMHGFTCGVDDLLILKDKERERKNHLHGS----EEIGKRVHLEALELEDGAEIDP 853
               +L   GF+ G+ D+    D ++++++ +  +    +E+    +   LE + G     
Sbjct: 701  CARYLGNRGFSIGISDVTPADDLKKKKEDMVEFAYAKCDELIDSYNKGKLETQPGCN--- 757

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
               + +  +A  GG           + S++ +      INEL  + L  P       +M 
Sbjct: 758  ---EEQTLEAKIGG-----------LLSKVREEVGDVCINEL--DNLNAPL------IMA 795

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
            T G+KGS +N  Q+ + +GQQ + G RVP     ++LP F      P++ GF+ + F +G
Sbjct: 796  TCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSG 855

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            L P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR +   IVQF 
Sbjct: 856  LTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGIVQFT 915

Query: 1034 YGEDGVD 1040
            YG DG+D
Sbjct: 916  YGGDGLD 922



 Score = 86.7 bits (213), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 56/80 (70%), Gaps = 1/80 (1%)

Query: 1125 QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
            ++FLK+   K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR++
Sbjct: 1068 REFLKIAISKYRRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1127

Query: 1185 EILTIASKDIKTPVITCPLL 1204
            EI+  ASK I TP+I   L+
Sbjct: 1128 EIIN-ASKVISTPIINAVLV 1146



 Score = 42.0 bits (97), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 23/44 (52%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC      C GHFGHI L +PV++   F     +L+ IC  C
Sbjct: 67  CTTCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQGICKNC 110


>gi|297746170|emb|CBI16226.3| unnamed protein product [Vitis vinifera]
          Length = 1819

 Score =  341 bits (874), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 258/772 (33%), Positives = 371/772 (48%), Gaps = 142/772 (18%)

Query: 289  VPPIKFRLPS---KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
            VPPI  R PS    GG    E+  T  L +++QAN  L     +    +K + A W  LQ
Sbjct: 256  VPPIAIR-PSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTGSTSKCL-AGWDYLQ 313

Query: 346  ----QSVNVLFDGKNAAGQRDM-ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
                Q +N    G   A Q     SG  Q L+ K+G FR  L GKRV Y  R+VISPDP 
Sbjct: 314  IEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPN 373

Query: 401  LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK 460
            L + E+ IP   A  L+YPERV+  N+ KLR  I+NG   +PGA         +R P   
Sbjct: 374  LKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGA-------KLIRYP--- 423

Query: 461  KMRISIGRKLDTSRGAIVQPGKD--SDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
                      D S  +++  G+   +D    G +V RHL+DGDVVL NRQP+LH+ SIM 
Sbjct: 424  ----------DGSMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMC 473

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H  R++   +TLR + + C+ YNADFDGDEMN+H PQ E +R EA  ++   N    P N
Sbjct: 474  HRARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKN 532

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            G+ L +  QD + S+ L+T+KDTF +R  F           S + S+ G     V     
Sbjct: 533  GEILVASTQDFLTSSFLITRKDTFYDRAAF-----------SLMCSYMGDGMDLV----- 576

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
                LP  PAI K   LWTGKQ+   +L                  P    +   N    
Sbjct: 577  ---DLP-TPAIIKAMELWTGKQLFNVLLR-----------------PHANVRVYLN---- 611

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN- 757
                      L+   K +  + G                     KE     +  + ++N 
Sbjct: 612  ----------LTVMEKTYNKRRG---------------------KETMCPSDGFVYFRNS 640

Query: 758  DLVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
            +L+ G + KA   +    GL   +   Y ++ A   ++ L++L   ++  HGF+ G+DD+
Sbjct: 641  ELISGQLGKATLGNGNKDGLFSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDV 700

Query: 815  L---ILKDKERER-KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
                +L D++ +R +       E+ ++ +   L+L+ G                      
Sbjct: 701  QPGGLLNDQKSKRIEEGYENCHELIQQYNKGKLKLQPGCN-------------------- 740

Query: 871  AVAYFDMKMTSQLNK--HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQIS 928
            A    + ++T  LNK   T+++V  E L         +N   +M+  G+KGS +N  Q+ 
Sbjct: 741  AAQTLEAEITGVLNKIRETTANVCMEELH-------WRNSPLIMSQCGSKGSPINISQMI 793

Query: 929  SHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGRE 988
            + +GQQ + G+R P     +TLP F      P A GF+   F TGL   E++FH M GRE
Sbjct: 794  ACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYTGLTATEFFFHTMGGRE 853

Query: 989  GLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            GLVDTAVKT+ +GY+ R L+K LE L I YD +VR+A+GSIVQF YG+DG+D
Sbjct: 854  GLVDTAVKTADTGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGDDGMD 905



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            FL     ++ L   + G  +G + + S+GEP TQMTL TFH AG   MNVTLG+PR++EI
Sbjct: 1455 FLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI 1514

Query: 1187 LTIASKDIKTPVITCPL 1203
            +   +K I TP+IT  L
Sbjct: 1515 IN-GAKRISTPIITAAL 1530



 Score = 42.4 bits (98), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF----KASRREVEK 56
           C TC      CPGH G++ L +PVYN    + +  +LK IC  C       KAS+  ++K
Sbjct: 73  CATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLLDEKASKDYLKK 132

Query: 57  C-VRKLELIIKGDII 70
              +K+E + K +++
Sbjct: 133 MRSQKMEALKKAELM 147


>gi|213404374|ref|XP_002172959.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
            japonicus yFS275]
 gi|212001006|gb|EEB06666.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
            japonicus yFS275]
          Length = 1748

 Score =  341 bits (874), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 252/771 (32%), Positives = 372/771 (48%), Gaps = 150/771 (19%)

Query: 298  SKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV-IVARWMNLQQSVNVLFDGKN 356
            S  G S  E   T  LS +++AN   AN    + + A   IV+ +  L Q     +    
Sbjct: 257  SVDGSSRGEDDLTHKLSDIIKAN---ANVRRCEQEGAPAHIVSEYEQLLQFHVATYMDNE 313

Query: 357  AAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGI 408
             AGQ        R + S I   L+ KEG  R  LMGKRV+++ R+VI+ DP L+++E+G+
Sbjct: 314  IAGQPQALQKSGRPLKS-IRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDELGV 372

Query: 409  PPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGR 468
            P   A  LTYPE VTP+N+ +L++ + NG + HPGA + +                  G 
Sbjct: 373  PRTIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYIIR---------------DTGE 417

Query: 469  KLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK 528
            ++D       +   D    + G  V RH++DGDVV+ NRQP+LHK S+M H +RV+    
Sbjct: 418  RIDLRYH---KRAGDIPLRY-GWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMP-YS 472

Query: 529  TLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQD 588
            T R++ +  S YNADFDGDEMN+H PQ E +RAE   I     Q V P +  P+  ++QD
Sbjct: 473  TFRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEIAMVPRQIVSPQSNKPVMGIVQD 532

Query: 589  HIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPA 648
             +      + +D FL+RD    ++                    + +   +  V P  P 
Sbjct: 533  TLAGVRKFSLRDNFLSRDVVMNIM--------------------LWVPNWDGVVPP--PV 570

Query: 649  IWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
            I KP+PLWTGKQ+++             V+ +G  L +D        DKQ+    NDKG 
Sbjct: 571  ILKPKPLWTGKQILS------------LVIPKGINLTRD-------DDKQTYINPNDKG- 610

Query: 709  LSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQ 768
                                                       +LI   D+V GV+DK  
Sbjct: 611  -------------------------------------------MLIENGDIVYGVVDKKT 627

Query: 769  F--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDD----LLILKDKER 822
               +  GLVHT+ +  G     +  + + R+   +L  +GF+ G+ D    L  +KD  R
Sbjct: 628  VGASQGGLVHTIWKEKGPEVCKSFFNGIQRVVNFWLLHNGFSIGIGDTIADLATMKDITR 687

Query: 823  ERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQ 882
              K+      E  K      L+ E G  +                       F+ K++  
Sbjct: 688  TVKDARRQVTECIKDAQQNRLKPEPGMTLR--------------------ETFEAKVSRI 727

Query: 883  LNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
            LN+   ++  +   +E  LK +  N +  M  SG+KGS +N  Q+S+ +GQQ +EGKR+P
Sbjct: 728  LNQARDNAGRS---AEHSLKDS--NNVKQMVASGSKGSFINISQMSACVGQQIVEGKRIP 782

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D +P + GFI + +L GL PQE++FH MAGREGL+DTAVKT+ +GY
Sbjct: 783  FGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 842

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDAL 1053
            +QR L+K +E + + YD +VR+A G IVQF YGEDG+D     +   FDAL
Sbjct: 843  IQRRLVKAMEDVMVRYDGTVRNAMGDIVQFAYGEDGLDATIVEY-QVFDAL 892



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 61/85 (71%), Gaps = 1/85 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            N++A +  +  ++ +F      PGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG
Sbjct: 1041 NKIAFEWIIGEIEARFQQCQVNPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLG 1100

Query: 1180 IPRLQEILTIASKDIKTPVITCPLL 1204
            +PRL+EIL +A K+IKTP +T  LL
Sbjct: 1101 VPRLKEILNVA-KNIKTPSLTIYLL 1124



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFK 48
           C+TCG+    CPGHFGHI+L  PV++      +  +L+ +C+ C   K
Sbjct: 69  CQTCGETMAECPGHFGHIELAKPVFHIGFLTKIKKILECVCWNCGKLK 116


>gi|66815437|ref|XP_641735.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
 gi|166202448|sp|P35084.2|RPB1_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb1; Short=RNA
            polymerase II subunit B1; AltName: Full=DNA-directed RNA
            polymerase III subunit A
 gi|60469758|gb|EAL67745.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
          Length = 1727

 Score =  341 bits (874), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 220/679 (32%), Positives = 338/679 (49%), Gaps = 130/679 (19%)

Query: 367  ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
            I Q L+ KEG  R  LMGKRV+++ R+VI+ DP L+++++G+P   AL LTYPE VTP+N
Sbjct: 330  IRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFN 389

Query: 427  VVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN 486
            + K+R+ I NG   HPGA + +                    + D +R  +    K SD 
Sbjct: 390  IDKMRELIRNGPSEHPGAKYII--------------------REDGTRFDLRFVKKVSDT 429

Query: 487  EFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
              E G  V RH+ DGDVV+ NRQP+LHK S+M H ++V+    T R++ +  S YNADFD
Sbjct: 430  HLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMP-YSTFRLNLSVTSPYNADFD 488

Query: 546  GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
            GDEMN+H PQ   +RAE   I+    Q V P +  P+  ++QD ++ + L TK+D F+ +
Sbjct: 489  GDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEK 548

Query: 606  DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
            D    +L         L S+ GK             V P  PAI KP+ LWTGKQ+ + +
Sbjct: 549  DLVMNILM-------WLPSWDGK-------------VPP--PAILKPKQLWTGKQLFSLI 586

Query: 666  LNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKE 725
            +  I                                       L +    H DK      
Sbjct: 587  IPDI--------------------------------------NLIRFTSTHNDK------ 602

Query: 726  VVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYG 783
                           +  E    + +++I + +L+ G++ K     A+  ++H V   +G
Sbjct: 603  ---------------EPNECSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHG 647

Query: 784  SNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL 843
             +T    +     +   +L   GFT G+ D +                     +V L   
Sbjct: 648  HDTCRLFIDQTQTVVNHWLINRGFTMGIGDTI--------------ADSATMAKVTLTIS 693

Query: 844  ELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNK--HTSSSVINELLSEGLL 901
              ++  ++  + +K++ ++     G + +  F+ K+   LNK   T+ S   + LSE   
Sbjct: 694  SAKN--QVKELIIKAQNKQFECQPGKSVIETFEQKVNQVLNKARDTAGSSAQDSLSE--- 748

Query: 902  KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 961
                 N +  M T+G+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F   D+ P 
Sbjct: 749  ----DNNLKAMVTAGSKGSFINISQMMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPE 804

Query: 962  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1021
            + GF+ + +L GL PQE++FH M GREGL+DTAVKTS +GY+QR L+K +E + I YD +
Sbjct: 805  SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDAT 864

Query: 1022 VRDADGSIVQFCYGEDGVD 1040
            VR++ G ++QF YGEDG+D
Sbjct: 865  VRNSLGDVIQFAYGEDGID 883



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 68/96 (70%), Gaps = 6/96 (6%)

Query: 1113 FADKFLSNE--MAKQDFLKL---VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFH 1167
            FA K +  E  + ++ FL +   ++ KF+ +LA PGE VG LA+QS+GEP+TQMTLNTFH
Sbjct: 1045 FASKRVLTEFRLTEKAFLWVCGEIESKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFH 1104

Query: 1168 LAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
             AG    NVTLG+PRL+EI+ IA K +KTP +T  L
Sbjct: 1105 YAGVSSKNVTLGVPRLKEIINIA-KQVKTPSLTIYL 1139



 Score = 49.3 bits (116), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++    + +  +L+ +C+ C
Sbjct: 66  CQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHC 109


>gi|124028420|ref|YP_001013740.1| DNA-directed RNA polymerase subunit A' [Hyperthermus butylicus DSM
            5456]
 gi|123979114|gb|ABM81395.1| DNA-directed RNA polymerase subunit A' [Hyperthermus butylicus DSM
            5456]
          Length = 881

 Score =  341 bits (874), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 258/794 (32%), Positives = 391/794 (49%), Gaps = 139/794 (17%)

Query: 267  DMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYL 323
            D +  GF  ++    + +  VL VPPI  R PS   ++ +  E   T  L+ +++ N  L
Sbjct: 193  DARLLGFDPESARPEWMVLTVLPVPPIHVR-PSIVLETGIRAEDDLTHKLADIVRTNERL 251

Query: 324  ANAYVNQPDNAKVIVARWMNLQQSVNVLFDGK-------NAAGQRDMASGICQLLEKKEG 376
                ++      +I   W  LQ  V   FD +          G R +  G+ Q L+ KEG
Sbjct: 252  -RELIDSGAPQTLIDEHWTLLQYHVATYFDNELPRIPVARHRGGRPL-KGLAQRLKGKEG 309

Query: 377  LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
             FR  L GKRV+Y+ R+VISPDP +++NE+G+P   A  LT    VTPWN+ ++R  ++N
Sbjct: 310  RFRGNLSGKRVDYSARTVISPDPNISINEVGVPIEIAKTLTVRTPVTPWNIEEMRRYVLN 369

Query: 437  GAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGA-IVQPGKDSDNEFEGKMVYR 495
            G +  PGA + + K         +K+ +   R  D  R A +++P         G  V R
Sbjct: 370  GPDRWPGANYVITK-------DGRKIDL---RYADRKRIAEMLEP---------GWFVER 410

Query: 496  HLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQ 555
            HL+DGD+VL NRQP+LH+ SIMAH+V+VL G KT R++   C  YNADFDGDEMN+H P+
Sbjct: 411  HLRDGDIVLFNRQPSLHRMSIMAHIVKVLPG-KTFRLNLLVCPPYNADFDGDEMNLHVPR 469

Query: 556  DEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSS 615
             E ++AEA  ++      + P  G P+   +QD+I  A LLT K T L +++   LL ++
Sbjct: 470  TEEAQAEARELMLVQYHILSPRYGGPIIGGLQDYISGAYLLTSKATLLTQEDVIDLLSAA 529

Query: 616  GVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPP 675
            G        + G+  +               PAI  P+  WTGKQ+++            
Sbjct: 530  G--------YRGEIPE---------------PAILSPKKRWTGKQLVSLF---------- 556

Query: 676  FVVERGGKLPQDF-FKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEE 734
                    LP+DF FK               K ++S    M +D                
Sbjct: 557  --------LPKDFNFK--------------GKARVSAGIFMCED---------------- 578

Query: 735  KEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLL 791
                     E   ++  ++I K +L+ GV+DK          ++H + + YG++ A  + 
Sbjct: 579  ---------EWCWNDSFIVIKKGELLTGVLDKKAIGAEQPENMMHWLVKEYGTDYARYVY 629

Query: 792  SALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEI 851
              + ++F  F++  GFT  VDD+ +  +   + K  L  +EE  K    E +E     ++
Sbjct: 630  DNMFKMFIRFIEKRGFTMTVDDVALPPEAHEKIKVVLREAEERVK----ELIEQYRQGKL 685

Query: 852  DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
            +P+  ++  E       DA          S   K     V+N       L P   N + +
Sbjct: 686  EPVPGRTLEETLELRILDA---------LSDARKKVEDIVVN------YLDPF--NNVFI 728

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            M  +GA+G+++N  Q+++ LGQQ + G+R+ R    + LP F P D  P A GF+   F 
Sbjct: 729  MARTGARGNELNITQMAALLGQQSVRGERIYRGYRDRFLPHFKPGDLGPAARGFVYHSFY 788

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
             GL P E +FH   GREGLVDTAV+TS+SGY+QR LI  L+ L++ YD +VR   G IVQ
Sbjct: 789  LGLTPVEVFFHAAGGREGLVDTAVRTSQSGYMQRRLINALQDLRVEYDGTVRTPYGEIVQ 848

Query: 1032 FCYGEDGVDVHQTS 1045
            F YGEDGVD  +++
Sbjct: 849  FSYGEDGVDPMKSA 862



 Score = 44.3 bits (103), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 24/44 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TCG     CPGHFG I+LV PV +      +Y +L+  C  C
Sbjct: 60  CPTCGNDAKGCPGHFGRIELVRPVIHVGFAKYIYDVLRATCRQC 103


>gi|312273885|gb|ADQ57312.1| RNA polymerase II largest subunit, partial [Nosema sp. CPP 04-02]
          Length = 988

 Score =  340 bits (873), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 243/778 (31%), Positives = 384/778 (49%), Gaps = 129/778 (16%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
              L V+LVPP   R PS   + ++  E   T  LS ++++N YL   Y  +     +I  
Sbjct: 129  LILTVLLVPPPSVR-PSIVMEGMLRAEDDLTHKLSDIIKSNTYLKK-YEMEGAPGHIIRD 186

Query: 340  RWMNLQQSVNVLFDGKNAAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYAC 391
                LQ  V  L D  + +GQ        R + S I   L+ KEG  R  LMGKRV+++ 
Sbjct: 187  YEQLLQFHVATLID-NDISGQPQALQKSGRPLKS-ISARLKGKEGRVRGNLMGKRVDFSA 244

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            RSVI+ D  +++ E+G+P   A   T+PE++TP+N+ KL   + NG   +PGA +Y+ + 
Sbjct: 245  RSVITADANISLEEVGVPLEVAKIHTFPEKITPFNIEKLEKLVANGPNEYPGA-NYVIRT 303

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
               R+             L+ +RG I           EG +V RH+Q+GD +L NRQP+L
Sbjct: 304  DGQRI------------DLNFNRGDIKLE--------EGYIVERHMQNGDTILFNRQPSL 343

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK S+M H VRV+ G KT R++ +  S YNADFDGDEMN+H PQ+  S +E   I     
Sbjct: 344  HKMSMMGHKVRVMAG-KTFRLNLSVTSPYNADFDGDEMNLHMPQNYNSISELEEICMVPK 402

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSS---GLGSFTGK 628
            Q + P +  P+  ++QD +      T +D F +++E  Q+ YS         GL S   K
Sbjct: 403  QILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNEMMQVFYSIDFEKYYDIGLDSVI-K 461

Query: 629  PGQRVLISRSEQEVLPLL--PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQ 686
             G+++ +   E  ++ LL  PAI KP+ LWTGKQ+++ +                   P 
Sbjct: 462  KGKKLDMGAKEYSLMGLLSKPAIQKPKQLWTGKQILSFI------------------FPN 503

Query: 687  DFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKE 746
             F+K   N  +++D +                                            
Sbjct: 504  VFYKNSSNESRENDLEN------------------------------------------- 520

Query: 747  LSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFL-Q 803
            +S+  ++I   +++ G+IDK        GLVH +   +G +     +  + ++ T FL  
Sbjct: 521  VSDTSVVICGGEIMSGIIDKKAVGATQGGLVHIIANDFGYSRVTLFIDDIQKIITKFLMN 580

Query: 804  MHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            +H F+ G+ D +   D  +  K  +  S++                 +D I  K++  + 
Sbjct: 581  IHVFSMGIGDTVADSDTLKYVKQAIEKSKD----------------SVDEIIRKAQNNRL 624

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK-NWISLMTTSGAKGSKV 922
             R  G      F+ ++   LNK    S I+        K   K N +  M  SG+KGS +
Sbjct: 625  DRLPGMTMKESFESQVNYVLNKARDVSGIST------QKSLNKCNNMKAMVLSGSKGSFI 678

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  Q+++ +GQQ +EGKR+P   + +TLP F   D++ ++ GF+ + +L+GL P+E++FH
Sbjct: 679  NISQVTACVGQQNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFH 738

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             M GREGL+DTA+KT+ +GY+QR L+K +E   +  D SVR A G++ Q+ YGEDG+D
Sbjct: 739  AMGGREGLIDTAIKTAETGYIQRRLVKAMEDATVRLDGSVRGATGNVYQYLYGEDGLD 796


>gi|363753734|ref|XP_003647083.1| hypothetical protein Ecym_5525 [Eremothecium cymbalariae DBVPG#7215]
 gi|356890719|gb|AET40266.1| hypothetical protein Ecym_5525 [Eremothecium cymbalariae DBVPG#7215]
          Length = 1459

 Score =  340 bits (873), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 237/722 (32%), Positives = 362/722 (50%), Gaps = 116/722 (16%)

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVN-VLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLM 383
            N  + Q D  ++ VA ++N   SVN  L  G    G+     G CQ L+ K+G FR  L 
Sbjct: 310  NNMMEQWDYLQMAVAMYIN-SDSVNPALMPGGTGGGKTKPIRGFCQRLKGKQGRFRGNLS 368

Query: 384  GKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPG 443
            GKRV+++ R+VISPDP L+++E+ +P   A  LTYPERVT +N  KL+  IING  +HPG
Sbjct: 369  GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPERVTRYNKHKLQQLIINGPNVHPG 428

Query: 444  ATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVV 503
            A + L K    R       RI + + +                   G +V RH++DGDVV
Sbjct: 429  ANYMLKKNEDARRNLRYGDRIKLAKNIQI-----------------GDVVERHIEDGDVV 471

Query: 504  LVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEA 563
            L NRQP+LH+ SI++H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA
Sbjct: 472  LFNRQPSLHRLSILSHYAKI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEA 530

Query: 564  YNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLG 623
             N++   N  + P +G+P+ S  QD I  + L++ KD+F +R  F QLL           
Sbjct: 531  INLMGVKNNLLTPKSGEPIISATQDFITGSYLISHKDSFFDRATFTQLL----------- 579

Query: 624  SFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGK 683
                     ++   + Q  LP  PAI KP  LWTGKQV + ++      + P ++     
Sbjct: 580  --------SMMADANMQFDLP-PPAIIKPCYLWTGKQVFSLLIR--PNKKSPVII----- 623

Query: 684  LPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSK 743
                                     L   NK++                      KNKS 
Sbjct: 624  ------------------------NLDAKNKVYL-------------------PPKNKSF 640

Query: 744  EKELSEEK--LLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLF 798
              E+S     ++I  ++++ GV+DK+   D   + + +T+   +G   A   ++ +++L 
Sbjct: 641  PNEMSSNDGYVIIRGSEILCGVMDKSVLGDGKKHSVFYTILRDFGPYEAAKAMNRMAKLC 700

Query: 799  TVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKS 858
              +L   GF+ G++D  +   KE + K      EE+ +  + +  EL     ID  K + 
Sbjct: 701  ARYLGNRGFSIGIND--VTPGKELKAK-----KEEMVEIAYAKCDEL-----IDLFK-RG 747

Query: 859  EIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAK 918
            E+E       +  +      + S++ +      I EL  + L  P       +M T G+K
Sbjct: 748  ELETQPGCNEEQTLEAKIGGLLSKVREEVGEVCIREL--DNLNAPL------IMATCGSK 799

Query: 919  GSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQE 978
            GS +N  Q+ + +GQQ + G RVP     ++LP F      P++ GF+   F +GL P E
Sbjct: 800  GSNLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFAKNSKTPQSKGFVRSSFFSGLSPPE 859

Query: 979  YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDG 1038
            + FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR +   +VQF YG DG
Sbjct: 860  FLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGVVQFTYGGDG 919

Query: 1039 VD 1040
            +D
Sbjct: 920  LD 921



 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 52/78 (66%), Gaps = 1/78 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            FL +   K+  +  +PG  VG + + S+GEP TQMTL TFH AG   MN+TLG+PR++EI
Sbjct: 1069 FLNIAISKYHKAKVEPGTAVGAIGAHSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEI 1128

Query: 1187 LTIASKDIKTPVITCPLL 1204
            +  ASK I TP+I   L+
Sbjct: 1129 IN-ASKVISTPIINALLV 1145



 Score = 43.5 bits (101), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 29/61 (47%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC      C GHFGHI L +PV++   F     +L+ IC  C     S  E  + + +
Sbjct: 67  CSTCHGNLASCHGHFGHIKLALPVFHIGYFKATIQILQSICKNCAAILLSEEEKRQFLAE 126

Query: 61  L 61
           L
Sbjct: 127 L 127


>gi|321260548|ref|XP_003194994.1| DNA-directed RNA polymerase III largest subunit [Cryptococcus gattii
            WM276]
 gi|317461466|gb|ADV23207.1| DNA-directed RNA polymerase III largest subunit, putative
            [Cryptococcus gattii WM276]
          Length = 1463

 Score =  340 bits (873), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 256/816 (31%), Positives = 405/816 (49%), Gaps = 136/816 (16%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPP--IKFRLPSK 299
            L P  V ++ E++   + EL S   D+ +           +    + VPP  I+  + S+
Sbjct: 226  LNPLKVLNLFERVTAEDCELLSLHPDVGRP--------EDYIWQYISVPPPCIRPSVASE 277

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G++  E   T  L++++  N  LA   ++     ++I + W  L Q+V  L+    A G
Sbjct: 278  AGNN--EDDLTAKLAEIVNYNNTLA-LMMDLGRGIEMISSNWEVLGQAV-ALYINSQAPG 333

Query: 360  QRDMAS----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALR 415
             + + S    G  Q L+ K+G FR  L GKRV+++ R+VI PDP L ++E+ +P   A++
Sbjct: 334  MQTIGSKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVIGPDPNLRIDEVAVPEKVAVK 393

Query: 416  LTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRG 475
            L+YPERVT +N+  +R +IING+++HPGA     K           +RIS+    D    
Sbjct: 394  LSYPERVTDYNLQLMRQAIINGSKLHPGANVLERKHEN-----GSTVRISLNVMKD---- 444

Query: 476  AIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY 534
              ++  K    E + G +V+RH++DGD+VL NRQP+LHK SIM H VRV +  +T R++ 
Sbjct: 445  --LEARKRYARELQIGDVVHRHVRDGDIVLFNRQPSLHKLSIMCHRVRV-RPWRTFRLNE 501

Query: 535  ANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAA 594
              C+ YNADFDGDEMN+H PQ E +R EA  +++     V P NG+P+ + IQD I +A 
Sbjct: 502  CVCNPYNADFDGDEMNLHVPQTEEARTEALELMSVKKNLVTPRNGEPIIAAIQDFITAAY 561

Query: 595  LLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEP 654
            LL+++D F +R +F Q           + S+ G    ++       E+ P  P IWKP  
Sbjct: 562  LLSRRDRFYDRQQFTQ-----------IASYLGDANLKI-------EMPP--PTIWKPVR 601

Query: 655  LWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNK 714
            LWTGKQ+   ++      RP                                   +K +K
Sbjct: 602  LWTGKQIFNLLM------RP-----------------------------------NKESK 620

Query: 715  MHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--- 771
            +  +   K + +V+  P +E     + S     ++  L+I  ++++ GV DK    D   
Sbjct: 621  VLVNLEAKCRTLVD--PAKEDRFPPDMSP----NDGYLVIQNSEIMCGVFDKNTVGDGKK 674

Query: 772  YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL---ILKDKERERKNHL 828
              +   +   YG   A   ++ L+++   +L   GF+ G++D++   IL   +  R    
Sbjct: 675  NSVFGVILRDYGPEEAAQAMNRLAKIAARWLANIGFSLGINDVIPGPILHASKDARVEKA 734

Query: 829  HGSEEI----GKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +G  ++     KR  LE     D        L+S+I K +    D   A   + M  +L+
Sbjct: 735  YGECDVFIDLAKRGKLENAPGCD----QEATLESKISKTL---SDVREAVGKICM-QELS 786

Query: 885  KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRM 944
            +H +  +                    M T G+KGS +N  Q+ + +GQQ + G RV   
Sbjct: 787  RHNAPLI--------------------MATCGSKGSVINVAQMVACVGQQIIGGSRVRNG 826

Query: 945  VSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQ 1004
               ++LP F      P + GF+ + F +GL P E+ FH M+GREGLVDTAVKT+ +GY+ 
Sbjct: 827  FQDRSLPHFRKKSKNPPSKGFVRNSFFSGLTPPEFLFHAMSGREGLVDTAVKTAETGYMA 886

Query: 1005 RCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            R L+K LE L   YD SVR++ G IVQF YG+D +D
Sbjct: 887  RRLMKALEDLCTHYDLSVRNSVGGIVQFQYGDDMLD 922



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 84/143 (58%), Gaps = 8/143 (5%)

Query: 1070 KGSHTFVMGR-NQEMIYKKCS-GQLDASNAYIMELPDALKDNAEKFADKFLSN-----EM 1122
            + ++ FV+ +  ++M+ ++ + G  DA +  + E  +AL  + +    + L N     E 
Sbjct: 1014 ENTYKFVVDKIVKQMVDQRLARGLPDADDEEMAEEYEALLYSDDPAVQRVLENANKVTEA 1073

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
                FL+  + +++ +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR
Sbjct: 1074 QVNSFLENCRIRYLRAKIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPR 1133

Query: 1183 LQEILTIASKDIKTPVITCPLLV 1205
            ++EI+  A+K I TP+I   L +
Sbjct: 1134 IKEIIN-AAKVISTPIIAAELAI 1155



 Score = 43.5 bits (101), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TCG+    C GH+G+I LV+PV++   F     +L  IC  C
Sbjct: 79  CATCGEDTQKCVGHYGYIKLVLPVFHIGYFRPTINMLSCICKTC 122


>gi|392592712|gb|EIW82038.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Coniophora puteana RWD-64-598 SS2]
          Length = 1407

 Score =  340 bits (872), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 237/763 (31%), Positives = 373/763 (48%), Gaps = 114/763 (14%)

Query: 287  VLVPPIKFRLPSKGGDSVM-EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
            + VPP+  R PS   D    E   TV L++++  N  +          A+  +  W  LQ
Sbjct: 251  ISVPPVCIR-PSVAQDGASNEDDLTVKLTEIVFTNALIKQGLAKGAPIAQ-FMEHWEFLQ 308

Query: 346  QSVNVLFDGK-----NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
             SV +  + +     + AGQ+ M  G  Q L+ K+G FR  L GKRV+++ R+VISPDP 
Sbjct: 309  LSVAMYINSELPGVPSQAGQKPM-RGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPN 367

Query: 401  LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK 460
            L ++E+ +P   A  LTYPERVT  N+  L+ ++ NG ++HPGA +     S        
Sbjct: 368  LRIDEVAVPERVAKILTYPERVTSHNIDNLKQAVRNGCDVHPGANYVTAGSSGF------ 421

Query: 461  KMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHV 520
            K  +  G     +R AI      +D    G +V RH+ +GDVVL NRQP+LHK SIM H 
Sbjct: 422  KKYLKFG-----NRNAI------ADGLRIGDVVERHIINGDVVLFNRQPSLHKLSIMCHR 470

Query: 521  VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGD 580
            V+V +  ++ R++   C  YNADFDGDEMN+H PQ E +R EA  +++  +  V P NG+
Sbjct: 471  VKV-RPWRSFRLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVTPRNGE 529

Query: 581  PLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQ 640
            P+ + IQD I ++ L++++DTF +R  F Q+                       ++  + 
Sbjct: 530  PVIAAIQDFITASYLISRRDTFFDRRSFTQIC--------------------CYLADGDL 569

Query: 641  EVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSD 700
            ++    P IWKP  LWTGKQ+   ++             R  K  + F       +K  D
Sbjct: 570  QIDIPPPTIWKPVRLWTGKQIFNVLM-------------RPNKQSKIFVNVESKCNKPQD 616

Query: 701  RKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLV 760
             K  D  ++              K + +  P                ++  L++  ++++
Sbjct: 617  AKAADYPRM--------------KPLPDLSP----------------NDGWLVVVNSEIM 646

Query: 761  RGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLIL 817
             GV+DKA         +   +   YG + A   ++ +++L   +L   GF+ G++D+   
Sbjct: 647  CGVMDKATVGSGKKKSIFGVILRDYGPHEAAAAMNRVAKLCARYLANCGFSLGINDV--- 703

Query: 818  KDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDM 877
                      + G +   K+  L      D  ++  +  K ++E       +  +     
Sbjct: 704  ----------IPGRKLAAKKDDLVEKAYADCLDLIALAKKGKLENKPGCNQEQTLEAMIS 753

Query: 878  KMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELE 937
             + S++        ++EL        +  N   +M TSG+KGS +N  Q+ + +GQQ + 
Sbjct: 754  SVLSKVRDAVGEICMSEL--------SRHNAPLIMATSGSKGSVINVSQMVACVGQQIIA 805

Query: 938  GKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKT 997
            GKRVP     ++LP F      P + GF+ + F +GL P E+ FH ++GREGLVDTAVKT
Sbjct: 806  GKRVPDGFQDRSLPHFPKKSKEPPSKGFVRNSFYSGLLPTEFLFHAISGREGLVDTAVKT 865

Query: 998  SRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            + +GY+QR L+K LE L   YD SVR A G +VQF YG+DG+D
Sbjct: 866  AETGYMQRRLMKALEDLTTQYDLSVRTATGGVVQFRYGDDGLD 908



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 65/100 (65%), Gaps = 7/100 (7%)

Query: 1105 ALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLN 1164
            A+ DN  K  +  L      + FL+L   K+V +  +PG  VG + +QS+GEP TQMTL 
Sbjct: 1016 AIVDNHTKVTEAQL------RAFLELSWSKYVRAKIEPGSTVGAVGAQSIGEPGTQMTLK 1069

Query: 1165 TFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            TFH AG   MNVTLG+PR++EI+  A+K I TP+I+C L+
Sbjct: 1070 TFHFAGVASMNVTLGVPRIKEIIN-AAKAISTPIISCKLV 1108



 Score = 43.1 bits (100), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TCG     C GH+ +I L VPVY+   F     +L+ IC  C
Sbjct: 66  CETCGLSSVDCVGHYAYIKLAVPVYHIGYFKHSIAILQAICKTC 109


>gi|365984467|ref|XP_003669066.1| hypothetical protein NDAI_0C01620 [Naumovozyma dairenensis CBS 421]
 gi|343767834|emb|CCD23823.1| hypothetical protein NDAI_0C01620 [Naumovozyma dairenensis CBS 421]
          Length = 1460

 Score =  340 bits (872), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 237/728 (32%), Positives = 360/728 (49%), Gaps = 127/728 (17%)

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVN--VLFDGKNAAGQRDMASGICQLLEKKEGLFRQKL 382
            N  +   D  ++ VA ++N   SVN  +L    +  G+     G CQ L+ K+G FR  L
Sbjct: 310  NNMMEHWDYLQLTVAMYIN-SDSVNPAMLPGASSGGGKVKPIRGFCQRLKGKQGRFRGNL 368

Query: 383  MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
             GKRV+++ R+VISPDP L+++E+ +P   A  LT+PE+VT +N  KL+  IING  +HP
Sbjct: 369  SGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNRQKLQQLIINGPNVHP 428

Query: 443  GATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDV 502
            GA + L      R       R+ + + L                +F G +V RHL+DGDV
Sbjct: 429  GANYLLKNNEDARRNLRYGDRVKLAKNL----------------QF-GDVVERHLEDGDV 471

Query: 503  VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
            VL NRQP+LH+ SI++H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAE
Sbjct: 472  VLFNRQPSLHRLSILSHYAKI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAE 530

Query: 563  AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL 622
            A N++   N  + P +G+P+ +  QD I  + L++ KD+F +R    QLL  S +  + L
Sbjct: 531  AINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLTQLL--SMMCDANL 588

Query: 623  GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGG 682
              F   P                 PAI KP  LWTGKQ                      
Sbjct: 589  -QFDIPP-----------------PAIMKPHYLWTGKQ---------------------- 608

Query: 683  KLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKS 742
                  F      +K S    N    L   NK++                      K K+
Sbjct: 609  -----LFSLLIKPNKDSPVVIN----LDAKNKVYI-------------------PPKTKA 640

Query: 743  KEKELSEEK--LLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRL 797
               E+S     ++I  + ++ GV+DK+   D   + + +T+   YG   A T ++ +++L
Sbjct: 641  YPNEMSRNDGYVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAATAMNRMAKL 700

Query: 798  FTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED-----GAEID 852
               FL   GF+ G+ D+    D ++++       EE+ +  + +  EL D       E  
Sbjct: 701  CARFLGNRGFSIGISDVTPADDLKQKK-------EELVEIAYAKCDELIDQFNKGKLETQ 753

Query: 853  PIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLM 912
            P   + +  +A  GG           + S++ +      INEL  + L  P       +M
Sbjct: 754  PGCNEEQTLEAKIGG-----------LLSKVREEVGDVCINEL--DNLNAPL------IM 794

Query: 913  TTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLT 972
             T G+KGS +N  Q+ + +GQQ + G RVP     ++LP F      P++ GF+ + F +
Sbjct: 795  ATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFQKNSKTPQSKGFVRNSFFS 854

Query: 973  GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQF 1032
            GL P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR +   IVQF
Sbjct: 855  GLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGIVQF 914

Query: 1033 CYGEDGVD 1040
             YG DG+D
Sbjct: 915  TYGGDGLD 922



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 70/104 (67%), Gaps = 4/104 (3%)

Query: 1101 ELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQ 1160
            ++P+ ++ + ++     ++ ++ K+ FL++  +K+  +  +PG  VG + +QS+GEP TQ
Sbjct: 1047 QVPETIRYSVDQLYK--ITEDLVKK-FLEIALYKYRKARVEPGTAVGAIGAQSIGEPGTQ 1103

Query: 1161 MTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            MTL TFH AG   MNVTLG+PR++EI+  ASK I TP+I   L+
Sbjct: 1104 MTLKTFHFAGVASMNVTLGVPRIKEIIN-ASKVISTPIINAVLV 1146



 Score = 43.1 bits (100), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TC      C GHFGHI L +PV++   F     +L+ IC  C     S ++  + + +
Sbjct: 67  CETCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQGICKTCSAILLSDKDRRQFLNE 126

Query: 61  L 61
           L
Sbjct: 127 L 127


>gi|340939410|gb|EGS20032.1| RNA polymerase-like protein [Chaetomium thermophilum var.
            thermophilum DSM 1495]
          Length = 1541

 Score =  340 bits (872), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 240/775 (30%), Positives = 378/775 (48%), Gaps = 130/775 (16%)

Query: 281  IFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
            +F    +  PPI  R      ++  E   T  LS+++    +L  + + +  +  VI+ +
Sbjct: 263  MFLWQYIPAPPICIRPSVAQENASNEDDITSKLSEIILYAGHLRES-LKKGVSLPVIMEQ 321

Query: 341  WMNLQQSVNVLFD----GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            W  LQ  V +  +    G N  G      G CQ L+ K+G FR  L GKRV+++ R+VIS
Sbjct: 322  WEFLQLQVGMYVNSDVPGLNQPGFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVIS 381

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PDP L++ ++ +P   A  LTYPERV   N+ KLR  +ING    PGA   + K      
Sbjct: 382  PDPNLSIEQVAVPQLVAKNLTYPERVNHANIEKLRQRVINGPNNWPGAMGIIKK------ 435

Query: 457  PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
                K  + IG +    R A       +D +F G +V RHL+D D+VL NRQP+LHK SI
Sbjct: 436  -DGAKFNLKIGTEALRERHA-------NDLQF-GDIVERHLEDNDIVLFNRQPSLHKLSI 486

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            M+H+V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA N++   +  + P
Sbjct: 487  MSHLVKV-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNLITP 545

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
             NG+P+ +  QD I +A LL+ KD F +R+ F  +                    ++L+ 
Sbjct: 546  KNGEPIIAATQDFITAAYLLSSKDKFFDRETFTYIC------------------TQMLLG 587

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRP----PFVVERGGKLPQDFFKTR 692
             +  ++ P  PAI KP  LWTGKQ+   ++      RP    P +V              
Sbjct: 588  ETHLDLPP--PAIMKPRCLWTGKQIFNVLM------RPNKECPVLV-------------- 625

Query: 693  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL 752
                            L   NK+   K        +G P            + ++ +  L
Sbjct: 626  ---------------NLDAKNKVFSKKK-------DGHP-----------PDMDIDDAFL 652

Query: 753  LIYKNDLVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTC 809
            ++  ++++ G +DKA         + + +   YG + A   ++ L++L    L + GF+ 
Sbjct: 653  VVRNSEVMCGRMDKATVGGGKKNSVFYVILRDYGPDYAAAAMNRLAKLCARMLTLRGFSI 712

Query: 810  GVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMR 865
            GV D+     +   K +  ++     +E+ +      LE   G       ++  +E  + 
Sbjct: 713  GVGDVWPSGPLTAHKAKLVEDAYKRCDELIETYRQGKLEKAPGCS-----MEETLENMIS 767

Query: 866  GGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQ 925
            G            + SQ+ +   +  ++ L        +  N   +M  SG+KGS +N  
Sbjct: 768  G------------ILSQVRQQAGNYCVDSL--------SNNNAPLIMAKSGSKGSDINVA 807

Query: 926  QISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMA 985
            Q+ + +GQQ + GKRVP     ++LP FH     P + GF+ + F TGL P E+ FH ++
Sbjct: 808  QMIACVGQQIISGKRVPDGFQDRSLPHFHKNARQPPSKGFVRNSFYTGLTPSEFLFHAIS 867

Query: 986  GREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR ++G++VQF YG D +D
Sbjct: 868  GREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSEGNVVQFQYGADRLD 922



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 2/104 (1%)

Query: 1101 ELPDALKDNAEKFADKFLS-NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPST 1159
            + P+  +  A+   D+    +E   + F+++  HK+  +  +PG  VG + +QS+GEP T
Sbjct: 1088 DTPEKRQARAQAHVDRVAKVSERTLRQFIQMCLHKYKKARVEPGHAVGAVGAQSIGEPGT 1147

Query: 1160 QMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            QMTL TFH AG   M++T G+PR++EI+  ASK I TPVITC L
Sbjct: 1148 QMTLKTFHFAGVAGMSITQGVPRIKEIIN-ASKLISTPVITCKL 1190



 Score = 44.3 bits (103), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C TC      CPGHFGH+ L +PV++      + T L+ IC  C      +  RR+  K 
Sbjct: 77  CATCNMGLQDCPGHFGHVRLPLPVFHIGYLKYIQTTLQNICKDCARVLLTEPERRQFLKE 136

Query: 58  VRK 60
           +R+
Sbjct: 137 LRR 139


>gi|156088925|ref|XP_001611869.1| RNA polymerase Rpb1, domain containing protein [Babesia bovis]
 gi|154799123|gb|EDO08301.1| RNA polymerase Rpb1, domain containing protein [Babesia bovis]
          Length = 1541

 Score =  340 bits (871), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 247/768 (32%), Positives = 369/768 (48%), Gaps = 135/768 (17%)

Query: 289  VPPIKFRLPSKG--GDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVI---VARWMN 343
            VPP   R PS    G    E   T + S +++ N    N + NQ  N   I   +  W  
Sbjct: 310  VPPSCIR-PSVTIEGQGTTEDDLTCIFSDIVELN----NGWKNQIRNGSQISQFILSWQC 364

Query: 344  LQQSVNVLFDGKNAAGQRDMAS--------GICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
            LQ     L + +  A  + + S        G+CQ L+ KEG FR  L GKRV+++ R+VI
Sbjct: 365  LQLQCTRLINAEAPAVSQLLVSRNISKPGRGVCQRLKGKEGRFRGNLSGKRVDFSARTVI 424

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMR 455
            SPDP + V+E+ +P + A++LT+PE VT  N+  ++ +++NG  I PGAT Y+ K +   
Sbjct: 425  SPDPNVGVDEVVVPEWIAMKLTFPEEVTDSNISIMKKAVLNGVSIWPGAT-YVKKQN--- 480

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
                       G K          P   SDN   G +V RHL +GDVVL NRQP+LH+ S
Sbjct: 481  -----------GGKCSLQYA---NPKYMSDNLTVGDVVLRHLWNGDVVLFNRQPSLHRMS 526

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            IMAH VRV+ G  T R +   C  YNADFDGDEMN+H PQ   ++AEA ++++  +    
Sbjct: 527  IMAHRVRVMPGS-TFRFNECVCQPYNADFDGDEMNLHLPQTYEAKAEALHLMSVLHNLTT 585

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 635
            P NG+PL + +QD + ++ LLT KD FL R EFCQ              FT         
Sbjct: 586  PRNGEPLIAAVQDFLCASYLLTSKDRFLTRAEFCQ----------ACCHFTD-------- 627

Query: 636  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
            + S+ ++ P  PAI  P  LWTGKQV                               FNA
Sbjct: 628  AASQVDLPP--PAIIYPVMLWTGKQV-------------------------------FNA 654

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
              + +R+           +  +D    K   +  K G                   ++ +
Sbjct: 655  LLRPNRRCKVVVNFECKEREFQDPPVGKNACMCPKDG------------------YVIFH 696

Query: 756  KNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDD 813
             ++LV G + K     +  GL + +        A   +  +S+L + +L   G T G+DD
Sbjct: 697  NSELVSGALGKKALGASKDGLFYQLLTRNNRYIAAECMLRVSKLTSRWLAGFGMTIGLDD 756

Query: 814  LLILKDKERERKNHLHGSEEIGKRVHLEALELEDG-AEIDPIKLKSEIEKAMRGGGDAAV 872
            +       R     LH  +E+          L +G A++       +  +A+ G      
Sbjct: 757  V-------RPGPELLHHKQEL----------LNEGYAKVTAAINNFDTLQALPGCTREET 799

Query: 873  AYFDMK-MTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHL 931
                +K +  +L      +  + L ++   KP       +M  SGAKG+ +N  Q+ + +
Sbjct: 800  LELQVKRVLDELRNEAGKACNSNLRADN--KPL------IMFNSGAKGALINIAQMVALV 851

Query: 932  GQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLV 991
            GQQ + G+R+     G+TLP F       ++ GF+ + F +GL P+E++FH M+GREGL+
Sbjct: 852  GQQNVSGQRIENGFIGRTLPHFDIGCMDAKSRGFVANSFFSGLGPEEFFFHTMSGREGLI 911

Query: 992  DTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            DTAVKTS +GY+QR L+K LE L + YD++VR  DG +VQF YG+DG+
Sbjct: 912  DTAVKTSETGYMQRRLMKALEVLAVCYDHTVRTTDGHVVQFLYGDDGL 959



 Score = 86.7 bits (213), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 56/82 (68%), Gaps = 1/82 (1%)

Query: 1126 DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1185
            +F++     +  ++  PGE +G L +QS+GEP TQMTL TFH AG   MNVTLG+PR++E
Sbjct: 1181 EFVRCCWKDYQRAICVPGEAIGALGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKE 1240

Query: 1186 ILTIASKDIKTPVITCPLLVGK 1207
            I+  AS  I+TP+I  PL+  K
Sbjct: 1241 IIN-ASSTIQTPIIEVPLINNK 1261



 Score = 42.0 bits (97), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLF----NLLYTLLKRICFFCHHFKASRREVEK 56
           C TCG+    C GH+GHI L +PV++   F     +LY + KR  F        +R +E 
Sbjct: 145 CHTCGKDLKQCVGHWGHIQLQMPVFHIGFFKYTIQILYCICKRCAFLLLPENTVKRFLEA 204

Query: 57  CVRKLE 62
             R+++
Sbjct: 205 HRRRMD 210


>gi|336041421|gb|AEH95288.1| RNA polymerase II largest subunit [Malawimonas californiana]
          Length = 1014

 Score =  340 bits (871), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 247/787 (31%), Positives = 370/787 (47%), Gaps = 133/787 (16%)

Query: 267  DMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSV--MEHPQTVLLSKVLQANIYL 323
            D +  GF        + L  VL VPP   R PS   DS    E   T  LS +++AN  L
Sbjct: 134  DSKAMGFNPVLARPEWMLTTVLPVPPPAVR-PSIVMDSARAAEDDLTYKLSDIVKANNNL 192

Query: 324  ANAYVNQPDNAKVIVARWMNLQQSVNVLFD----GKNAAGQRDMA---SGICQLLEKKEG 376
                + +     +I      LQ  +  + D    G   + QR        I Q L  K G
Sbjct: 193  -KLQLERGAAPHIIQEFTQLLQYHIATMLDNEMPGMPVSSQRGSGRPLKSIRQRLRGKHG 251

Query: 377  LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
              R  LMGKRV+++ R+VI+PDP L+VNE+G+P   AL LTYPE VTP+N+ ++R  I N
Sbjct: 252  RIRGNLMGKRVDFSARTVITPDPNLSVNEVGVPRTIALNLTYPEVVTPYNIARMRQLIEN 311

Query: 437  GAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYR 495
            G   HPGA + L                    + D +R  +    K S+   + G  V R
Sbjct: 312  GPMKHPGAKYIL--------------------RDDGTRTDLRYAKKPSELHLDYGYKVER 351

Query: 496  HLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQ 555
            H+QDGDVV+ NRQP+LHK S+M H +R+L    T R++ +  + YNADFDGDEMN+H  Q
Sbjct: 352  HVQDGDVVIFNRQPSLHKMSMMGHRIRILPW-STFRLNLSVTTPYNADFDGDEMNMHVAQ 410

Query: 556  DEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSS 615
               +RAE   I+    Q V P    P+  ++QD ++   L TK+DTF+ RD    +L   
Sbjct: 411  SPETRAEIEEIMMVPRQIVSPQANKPVMGIVQDSLLGTKLFTKRDTFIERDLVMNVLM-- 468

Query: 616  GVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPP 675
                  L +F GK  +               PA+ KP+ LWTGKQ+ + ++       PP
Sbjct: 469  -----WLSTFEGKVPK---------------PAMLKPKVLWTGKQIFSMLI-------PP 501

Query: 676  FVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEK 735
                                                 N + K     ++E+ E       
Sbjct: 502  ------------------------------------VNLLRKSAQAPERELNE------- 518

Query: 736  EAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSA 793
            E     ++   L    + I   +++ G+I K         LVH V   +G       L +
Sbjct: 519  EFTYTDTRVCSL----VCIENGEVISGIICKQTVGSSSGSLVHVVWNEHGHEATRNFLDS 574

Query: 794  LSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +  +   +L   GF+ G+ D +  K+  ++    +  ++                A++  
Sbjct: 575  VQAVVNQWLLSRGFSVGIGDTIADKETMQQITRTIAAAK----------------AQVAS 618

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            +  +++        G   +  F+ K+ S LN  T+     +   + L      N +  M 
Sbjct: 619  LIKQAQNHNLEPQPGRTLMETFESKVNSALN--TARDKAGKSAEQSL---RSSNNVKEMV 673

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
            T+G+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F   D++P A GF+ + +L G
Sbjct: 674  TAGSKGSFINIAQMIACVGQQNVEGKRIPYGFRNRTLPHFVAADYSPEARGFVENSYLRG 733

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            L PQE++FH M GREGL+DTAVKTS +GY+QR LIK +E + + YD +VR++ G ++QF 
Sbjct: 734  LNPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLIKAMEDVMVRYDGTVRNSLGDVIQFL 793

Query: 1034 YGEDGVD 1040
            YGEDG D
Sbjct: 794  YGEDGFD 800


>gi|290984021|ref|XP_002674726.1| RNA polymerase II largest subunit [Naegleria gruberi]
 gi|284088318|gb|EFC41982.1| RNA polymerase II largest subunit [Naegleria gruberi]
          Length = 1650

 Score =  339 bits (870), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 229/716 (31%), Positives = 348/716 (48%), Gaps = 144/716 (20%)

Query: 339  ARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
            A +MN + S   +   KN      M   + Q L+ KEG  R  LMGKRV+++ R+VI+PD
Sbjct: 280  ATYMNNEISGVPMSTTKNGR----MLKSLRQRLKGKEGRVRGNLMGKRVDFSARTVITPD 335

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP 458
            P + ++++G+P   A  +T PE+VTP+N  ++ + ++NG E +PGA + L    T     
Sbjct: 336  PTIEIDQVGVPRTIARNMTVPEKVTPFNFERMNELVMNGPETYPGAKYVLRDDGT----- 390

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
                RI +    D S         D      G  + RHLQDGDVVL NRQP+LHK S+M 
Sbjct: 391  ----RIDLKFLSDRS--------TDQVQLQYGYTIERHLQDGDVVLFNRQPSLHKMSMMG 438

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H V+V+    T R++ +  + YNADFDGDEMN+H PQ   ++ E   ++      + P +
Sbjct: 439  HRVKVMP-YSTFRLNLSVVTPYNADFDGDEMNLHLPQSLQTKTELLELMMVPKNIITPQS 497

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ-LLYSSGVSSSGLGSFTGKPGQRVLISR 637
              PL +L+QD +++ +  T++D ++ +D     L+Y        L  F G+         
Sbjct: 498  HRPLIALVQDTLLAGSKCTRRDVYIEKDVMMNCLMY--------LQDFNGQ--------- 540

Query: 638  SEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADK 697
                 LP +PAI KP+PLWTGKQ+ + +L  I                 D++        
Sbjct: 541  -----LP-VPAILKPKPLWTGKQLFSLLLPSI-----------------DYY-------- 569

Query: 698  QSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN 757
                       +S T   H D+ G  K + +  P                 +  ++I   
Sbjct: 570  ----------GISST---HDDEVGDLKHLDDHLPE---------------FDTGIIISNG 601

Query: 758  DLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL 815
            +L+ G++DK         L+H +    G+      L     +   +L  HGF+ G+ D +
Sbjct: 602  ELLTGILDKKSLGSSHGSLIHIIVNDKGTQEGKKFLGQCQHVLNYWLLQHGFSVGIGDTI 661

Query: 816  -----------ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAM 864
                       I+ + ERE K       +I K+ H   +  E G  ++        E+++
Sbjct: 662  ADGETVKKIEEIINNAEREVK-------KIVKQAHNGLVTAEPGRTVE-----QSFERSI 709

Query: 865  RGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNF 924
                +AA     M +   L                       N I  M TSG+KGS +N 
Sbjct: 710  NSTLNAAREDAGMHVKKSLKD--------------------SNSIKSMVTSGSKGSYLNI 749

Query: 925  QQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCM 984
             QI + +GQQ +EGKRVP     +TLP F   D  P + GF+ + +L GL PQE++FH M
Sbjct: 750  SQIIACVGQQNVEGKRVPFGFKNRTLPHFSTDDHGPESRGFVANSYLRGLTPQEFFFHTM 809

Query: 985  AGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             GREGL+DTAVKT+ +GY+QR L+K +E +K++YD +VRDA G+I+QF YGEDG+D
Sbjct: 810  GGREGLIDTAVKTAETGYIQRRLVKAMEDVKVNYDGTVRDASGNIIQFLYGEDGMD 865



 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 66/96 (68%), Gaps = 6/96 (6%)

Query: 1113 FADKFLSNEM-----AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFH 1167
             A K + NE+     + +  L  VK+ F+  L QPGE VG +A+QS+GEP+TQMTLNTFH
Sbjct: 1019 LASKVVMNELNLTRESLEYLLGEVKYTFLNGLVQPGEMVGCIAAQSIGEPATQMTLNTFH 1078

Query: 1168 LAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
             AG    NVTLG+PRL+E+L + S++IKTP +T  L
Sbjct: 1079 NAGVSSKNVTLGVPRLKELLDV-SRNIKTPGLTIYL 1113



 Score = 44.7 bits (104), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVE 55
           C TCG     CPGHFGH++ + P +N L    +  +LK  C  C     +R   E
Sbjct: 66  CMTCGCGVSECPGHFGHVN-IHPTFNILFLKTIVKILKCTCVHCSRLLFNRNTPE 119


>gi|347831184|emb|CCD46881.1| similar to DNA-directed RNA polymerase iii largest subunit
            [Botryotinia fuckeliana]
          Length = 1442

 Score =  339 bits (869), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 256/849 (30%), Positives = 403/849 (47%), Gaps = 139/849 (16%)

Query: 213  QDTAARRHQKGSGAVPSGFKK-QKDLFSGPLLPSDVKDIIEKLWE--------NEFELCS 263
            + TAA++       VP G  + QK         ++++  ++K++E        N F+L +
Sbjct: 191  KSTAAKK------VVPPGMAEYQKSFEEAKKHNTELEKHVKKVYEDLHPLRVLNLFKLIT 244

Query: 264  FISDMQQQGFGKKAGH-SIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIY 322
              SD +  G     G   +F    V  PPI  R   +      E   T  L++++ +   
Sbjct: 245  -PSDCELLGINPAEGRPEMFLWQFVPAPPICIRPSVQQDGGSNEDDITTKLAEIV-SMAS 302

Query: 323  LANAYVNQPDNAKVIVARW----MNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
            L  A +++    + I+ +W    + +   VN    G    G      G CQ L+ K+G F
Sbjct: 303  LLRAALHKGQAVQTIMEQWDFLQLQIAMYVNSDVPGLQQPGFGKAIRGFCQRLKGKQGRF 362

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R  L GKRV+++ R+VISPDP L ++E+ +P   A  LTYPERV   N+ KLR  +ING 
Sbjct: 363  RGNLSGKRVDFSGRTVISPDPNLGIDEVAVPILVAKNLTYPERVQRQNIEKLRQCVINGP 422

Query: 439  EIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE----GKMVY 494
             +HPGA   + K S      N K+ +   ++               DNE +    G +V 
Sbjct: 423  NVHPGAQQIIKKDS------NHKISLKFAKR---------------DNEAKFLKIGDVVE 461

Query: 495  RHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFP 554
            RHL+DGD+VL NRQP+LHK SIM+H  ++ +  +T R++   C+ YNADFDGDEMN+H P
Sbjct: 462  RHLEDGDIVLFNRQPSLHKLSIMSHYAKI-RPWRTFRLNECVCNPYNADFDGDEMNLHVP 520

Query: 555  QDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYS 614
            Q E +R EA N++   N    P NG+P+ S  QD I +A LL+ K+ F +R  F  +   
Sbjct: 521  QTEEARTEAINLMGVKNNLSTPKNGEPIISATQDFITAAYLLSNKENFFDRKTFTNICM- 579

Query: 615  SGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRP 674
                               ++  +    LP  PAI KP+ LWTGKQV + ++      RP
Sbjct: 580  ------------------YMVDANLHLQLP-DPAILKPQALWTGKQVFSVLM------RP 614

Query: 675  PFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEE 734
                                               +K + +  +   K ++ V       
Sbjct: 615  -----------------------------------NKQDNILVNVDAKCRDFVPSM---- 635

Query: 735  KEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLL 791
                K  + + E ++  L+I  ++++ G++DK+         + + +   YG + A   +
Sbjct: 636  --VPKGFANDMEANDGWLVIRNSEVMCGLMDKSTVGSGKKDSIFYVILRDYGPDAAVVAM 693

Query: 792  SALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEI 851
            + LS+L   +L   GF+ G+ D+    +  + +   +  +       ++E  +L     I
Sbjct: 694  NRLSKLSARYLTNMGFSIGISDVYPSAELNKSKARLIAAA-------YVECEQL-----I 741

Query: 852  DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
            +  K  + +EK+    G +     + K++ +L     S V      E L      +   +
Sbjct: 742  ESFK-NNTLEKST---GLSMEETLEAKLSGKL-----SQVRGAAGKECLRTLYASSSPLV 792

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            M  SG+KGS +N  Q+ + +GQQ + G RV      +TLP F      P A GF+ + F 
Sbjct: 793  MANSGSKGSAINVAQMVALVGQQIIGGSRVQEGFQDRTLPHFPKHSKQPPAKGFVANSFF 852

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            TGL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR + G IVQ
Sbjct: 853  TGLTPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSGGGIVQ 912

Query: 1032 FCYGEDGVD 1040
            F +G DG+D
Sbjct: 913  FQFGADGLD 921



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 57/88 (64%), Gaps = 1/88 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            +E   + F +L   K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   MN+T G
Sbjct: 1061 SETTLKKFCELCLEKYSRAKVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMNLTAG 1120

Query: 1180 IPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +PR++EI+  ASK I TP + CPLL  K
Sbjct: 1121 VPRIKEIIN-ASKTIATPFVKCPLLNSK 1147



 Score = 42.4 bits (98), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C TC +    C GHFGH+ L +P ++     L+  +L+ +C  C       A RR+  K 
Sbjct: 76  CDTCDKGLQDCNGHFGHVRLPLPAFHIGYLKLIIMILQNVCKTCARVLLTDAERRQFLKE 135

Query: 58  VRK 60
           +RK
Sbjct: 136 LRK 138


>gi|414586610|tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
          Length = 1030

 Score =  339 bits (869), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 252/764 (32%), Positives = 364/764 (47%), Gaps = 113/764 (14%)

Query: 287  VLVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNL 344
            + VPP+  R     G+S    E   TV+L  ++  N  L           K     W  L
Sbjct: 249  IAVPPVPIRPSVVVGNSRTSNEDSITVILKSIVNTNSILKETLHTGGPFTKCFDC-WQYL 307

Query: 345  QQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVN 404
            Q  V    +    +       G+ Q L+ K G FR  L GKR  Y  R+VISPDP L + 
Sbjct: 308  QLQVVEYVNSDAPSLPESQHRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVISPDPNLKIT 367

Query: 405  EIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRI 464
            E+ IP   A  LTYPERV+ +N+ KLR  I NG   +PGA            P   K  +
Sbjct: 368  EVAIPVLMARVLTYPERVSNYNIEKLRQCIRNGPFKYPGANFVTQ-------PDGMKQSL 420

Query: 465  SIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVL 524
              G +  T+R               G +V RHL+DGDVVL NRQP+LH+ SIM H  R++
Sbjct: 421  KYGDRRITARDLKC-----------GCIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIM 469

Query: 525  KGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRS 584
               +TLR + + C+ YNADFDGDEMN+H PQ E +R EA  ++   N    P NG+ L +
Sbjct: 470  PW-RTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVA 528

Query: 585  LIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLP 644
              QD + S+ L+T+KDTF +R  F           + L S+ G   + +         LP
Sbjct: 529  STQDFLTSSFLVTRKDTFYDRSSF-----------TLLCSYLGDGMENI--------DLP 569

Query: 645  LLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKN 704
              PA+ KP  LWTGKQ+ + ++                  P    K   N   Q      
Sbjct: 570  -TPALIKPVELWTGKQLFSVLVR-----------------PNAHTKVFLNLAVQE----- 606

Query: 705  DKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGV 763
               K+    K  K+   + KE + G+             E     +  + ++N +L+ G 
Sbjct: 607  ---KIYSKKKGKKEGGEEVKETMCGR-------------ETMCPNDGYVYFRNSELLSGQ 650

Query: 764  IDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDK 820
            + KA   +    GL   +   Y S+ A + ++ L++    F+  HGF+ GVDD+   +  
Sbjct: 651  VGKATLGNGNKDGLYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHL 710

Query: 821  ERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMT 880
             R++K  + G     K+ H            D I L ++   A+  G +AA         
Sbjct: 711  NRQKKKEIDGGY---KKCH------------DLISLFAKGALALHPGCNAA--------- 746

Query: 881  SQLNKHTSSSVINELLS-EGLLKPTGKNWIS---LMTTSGAKGSKVNFQQISSHLGQQEL 936
             Q  +H  + V+NE+ S  G +     +W +   +M+  G+KGS +N  Q+ + +GQQ +
Sbjct: 747  -QTLEHNITGVLNEIRSIAGNVCMDTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSV 805

Query: 937  EGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVK 996
             G+R P     +TLP F      P A GF+ + F TGL   E++FH M GREGLVDTAVK
Sbjct: 806  GGRRAPDGFLNRTLPHFPINSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVK 865

Query: 997  TSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            T+ +GY+ R L+K LE L + YD +VR+A G IVQF YG+DG+D
Sbjct: 866  TAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMD 909



 Score = 48.5 bits (114), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHH---FKASRREVEKC 57
           C TC      CPGHFG++ L +PV+N   FN +  +LK IC  C      +  RRE  K 
Sbjct: 76  CNTCHGEFSDCPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCSRVLLIEKDRREFLKK 135

Query: 58  VR 59
           +R
Sbjct: 136 MR 137


>gi|354482229|ref|XP_003503302.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
            [Cricetulus griseus]
          Length = 1280

 Score =  339 bits (869), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 243/777 (31%), Positives = 367/777 (47%), Gaps = 132/777 (16%)

Query: 280  SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
            S   L  +LVPP+  R PS   D      E   T+ L++++  N  +    ++     ++
Sbjct: 248  SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305

Query: 337  IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
            I+  W  LQ    +  + + +    +MA      G  Q L+ K+G FR  L GKRV+++ 
Sbjct: 306  IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VISPDP L ++E+ +P + A  LT+PE+V   N+  LR  + NG ++HPGA     + 
Sbjct: 366  RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQRH 425

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
              M+       R  + ++L                   G +V RHL DGDVVL NRQP+L
Sbjct: 426  MQMKRFLKYGNREKMAQELKF-----------------GDIVERHLIDGDVVLFNRQPSL 468

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIMAH+ RV K  +T R +   C+ YNADFDGDEMN+H PQ E ++AEA  ++    
Sbjct: 469  HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P NG+PL + IQD +  A LLT KDTF +R + CQ++ S                 
Sbjct: 528  NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570

Query: 632  RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
             +L+ + E+  + L  P I KP  LWTGKQ+ + +L                  P D   
Sbjct: 571  -ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSIILR-----------------PSDDSP 612

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
             R N   +                  K   GK +++                    +++ 
Sbjct: 613  VRANLRTKG-----------------KQYCGKGEDLC-------------------VNDS 636

Query: 751  KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             + I  ++L+ G +DK      +   + + +   +G N A   +S L+RL  V+L   GF
Sbjct: 637  YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 696

Query: 808  TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            + G+ D+     +LK K           +E  + ++   L+ + G               
Sbjct: 697  SIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCT------------- 743

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 +  +    +K  S +  H  S+ + EL           N    M   G+KGS +N
Sbjct: 744  ----AEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 791

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+ + +GQQ + G RVP     ++LP F      P A  F+ + F +GL P E++FH 
Sbjct: 792  ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKEFVANSFYSGLTPTEFFFHT 851

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            MAGREGLVDTAVKT+ +GY+QR L+K+LE L   YD +VR + G I+QF YG DG+D
Sbjct: 852  MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD 908



 Score = 47.4 bits (111), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TCG+    C GH+G+IDL +P ++   F  +  +L+ IC  C H   S+ E
Sbjct: 69  CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121


>gi|403223773|dbj|BAM41903.1| DNA-directed RNA polymerase III largest subunit RPC1 [Theileria
            orientalis strain Shintoku]
          Length = 1643

 Score =  338 bits (868), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 248/780 (31%), Positives = 377/780 (48%), Gaps = 107/780 (13%)

Query: 301  GDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ----QSVNVLFDGKN 356
            G    E   TV  S ++  N  L N   N     + I   W  LQ    + +N  + G N
Sbjct: 327  GQGTTEDDLTVDFSDIVDINNLLKNQIKNGLQTNRFI-GNWQILQVQCTRFINSEYPGLN 385

Query: 357  -AAGQRDMAS---GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYF 412
                 R++     G+C+ L+ KEG FR  L GKRV+++ R+VISPDP + ++E+ IP + 
Sbjct: 386  HLLTSRNITKPGRGLCERLKGKEGRFRGNLSGKRVDFSARTVISPDPNVGIDEVVIPEWI 445

Query: 413  ALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDT 472
            A RLT+PERV+ +N+  ++ +I+NG  + PGA++                      KLD 
Sbjct: 446  ARRLTFPERVSSYNIEVMKKAILNGESVWPGASYV--------------------HKLDG 485

Query: 473  SRGAI--VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTL 530
            S+ ++    P   S+N   G +V RHL +GD+V+ NRQP+LH+ SIM H  R+++G  T 
Sbjct: 486  SKCSLRFANPKHVSENIQVGDIVERHLWNGDLVIFNRQPSLHRLSIMCHRARIMRGS-TF 544

Query: 531  RMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHI 590
            R +   C+ YNADFDGDEMN+H PQ   ++AE+ ++++       P NG+PL + +QD +
Sbjct: 545  RFNECVCTPYNADFDGDEMNIHLPQTYEAKAESLHLLSVQKNLTTPRNGEPLIAPVQDFL 604

Query: 591  VSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIW 650
             S+ LLT KD FL R +FCQ+          +  FT           S    LP  P+I 
Sbjct: 605  CSSYLLTNKDMFLTRAQFCQI----------ISYFT---------DASIHVDLP-PPSIV 644

Query: 651  KPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDF-FKTRFNADKQSDRKKNDKGKL 709
             P  LWTGKQ    ++      RP     R  K+  +   K R   D     K   KG  
Sbjct: 645  HPVTLWTGKQAFNVLI------RP----NRASKVMVNLRVKEREFMDPNVYYKSGGKGAR 694

Query: 710  SK-TNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKEL---SEEKLLIYKNDLVRGVID 765
                N+  +          E      +E+     K  E     +  ++IYK++L+ G + 
Sbjct: 695  GMGDNRTKRRGPEDMDLDEEEDEQNSRESWGAAVKLDECMCPHDGYVVIYKSELLSGSLG 754

Query: 766  KAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL-----LILK 818
                     GL + +     +  +   +  +S+L + +L  +G T G+DD+     LI K
Sbjct: 755  VRSLGPTKGGLFYELMLKNSAKVSSECMLRVSKLSSRWLSEYGMTIGLDDVTPSEELINK 814

Query: 819  DKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMK 878
             K+     +L   E I     L+        E   +++KS +++     G    +     
Sbjct: 815  KKQLLLDGYLRVDEAISNFEFLQPYPGCTREETLELQVKSILDELRNESGKICTS----- 869

Query: 879  MTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEG 938
                                 LL P  K  I  M  SG+KG+ +N  Q+ + +GQQ + G
Sbjct: 870  ---------------------LLSPDNKPLI--MFNSGSKGALINIAQMVACVGQQNVSG 906

Query: 939  KRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTS 998
            +R+      +TLP F       ++ GF+ + F TGL P+E++FH M+GREGL+DTAVKTS
Sbjct: 907  QRIQNGFIERTLPHFPMGCKDAKSRGFVANSFFTGLEPEEFFFHTMSGREGLIDTAVKTS 966

Query: 999  RSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD-----VHQTSFISKFDAL 1053
             +GY+QR L+K +E L I YD+SVR  DG +VQF YG+DG+        QT+  S FD +
Sbjct: 967  ETGYMQRRLMKFMEDLAICYDHSVRTGDGQVVQFLYGDDGLTSALSKSSQTTLKSSFDHI 1026



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 54/78 (69%), Gaps = 1/78 (1%)

Query: 1126 DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1185
            +F++     +   + +PGE +G L +QS+GEP+TQMTL TFH AG   MNVTLG+PR++E
Sbjct: 1284 EFIRYTWKHYQKCICEPGEAIGALGAQSIGEPATQMTLKTFHFAGVASMNVTLGVPRIKE 1343

Query: 1186 ILTIASKDIKTPVITCPL 1203
            I+  AS  I TP+I  PL
Sbjct: 1344 IIG-ASAKIATPIIEVPL 1360


>gi|281203888|gb|EFA78084.1| RNA polymerase II largest subunit [Polysphondylium pallidum PN500]
          Length = 2159

 Score =  338 bits (868), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 217/695 (31%), Positives = 344/695 (49%), Gaps = 134/695 (19%)

Query: 366  GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPW 425
             I Q L+ KEG  R  LMGKRV+++ R+VI+ DP L+++++G+P   AL LTYPE VTP+
Sbjct: 330  SIRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPF 389

Query: 426  NVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSD 485
            N+ ++R+ I NG   HPGA + +                    + D +R  +    K +D
Sbjct: 390  NIDRMRELIRNGPNEHPGAKYII--------------------REDGTRFDLRFVKKITD 429

Query: 486  NEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADF 544
               E G  V RH+QDGDVV+ NRQP+LHK S+M H ++V+    T R++ +  S YNADF
Sbjct: 430  THLECGYKVERHIQDGDVVIFNRQPSLHKMSMMGHRIKVMP-YSTFRLNLSVTSPYNADF 488

Query: 545  DGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLN 604
            DGDEMN+H PQ   +RAE   I+    Q V P +  P+  ++QD ++ +   TK+DTF+ 
Sbjct: 489  DGDEMNLHVPQSLETRAEIIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSMKFTKRDTFVE 548

Query: 605  RDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITA 664
            RD    +L         L S+ GK             + P  PAIWKP+ LWTGKQ+ + 
Sbjct: 549  RDLMMNILM-------WLPSWDGK-------------IPP--PAIWKPKKLWTGKQLFSL 586

Query: 665  VLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKK 724
            ++ +I                                       L +    H DK  +K 
Sbjct: 587  IIPNI--------------------------------------NLQRFGSTHSDKEKEKS 608

Query: 725  EVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELY 782
            E+                     ++  ++I + +L+ G++ K     A+  ++H V   +
Sbjct: 609  EMA--------------------ADTVVIIDQGELLTGILCKRSLGAANGSIIHVVMNEH 648

Query: 783  GSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEA 842
            G ++    +     +   +L  HGFT G+ D +                 +      + +
Sbjct: 649  GHDSCRLFIDQTQTVVNHWLINHGFTVGIGDTI----------------ADAATMSKVTS 692

Query: 843  LELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGL 900
                   ++  + +K++  +     G + +  F+ ++   LN  +  + +     L E  
Sbjct: 693  AIANAKTQVKELIIKAQSNQFECQPGRSMLESFEKEVNRVLNTARDDAGTSAQRSLQES- 751

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
                  N +  M  +G+KGS +N  Q+ + +GQQ +EGKRVP     +TLP F   D+ P
Sbjct: 752  ------NNVKAMVNAGSKGSFINISQMMACVGQQNVEGKRVPFGFQNRTLPHFTKDDYGP 805

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
             + GF+ + +L GL PQE++FH M GREGL+DTAVKTS +GY+QR L+K +E + + YD 
Sbjct: 806  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVSVKYDA 865

Query: 1021 SVRDADGSIVQFCYGEDGVDVHQTSFISK--FDAL 1053
            +VR++ G ++QF YGEDG+D   + F+    FD+L
Sbjct: 866  TVRNSLGDVIQFAYGEDGLD---SCFVENQMFDSL 897



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 68/95 (71%), Gaps = 1/95 (1%)

Query: 1109 NAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHL 1168
            ++++  ++F  NE A    +  V+ KF+LS+  PGE VG LA+QS+GEP+TQMTLNTFH 
Sbjct: 1048 SSKRVLEEFRLNEKAFNWMVGEVESKFLLSIVNPGEMVGALAAQSIGEPATQMTLNTFHY 1107

Query: 1169 AGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            AG    NVTLG+PRL+EI+ IA K +KTP +T  L
Sbjct: 1108 AGVSSKNVTLGVPRLKEIINIA-KTVKTPSLTIYL 1141



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC      CPGHFGHI+L  PV++    N +  +LK +C+ C
Sbjct: 65  CATCSGTMAECPGHFGHIELAKPVFHIGFINTVLKILKCVCYHC 108


>gi|154300910|ref|XP_001550869.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
          Length = 1468

 Score =  338 bits (868), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 256/849 (30%), Positives = 403/849 (47%), Gaps = 139/849 (16%)

Query: 213  QDTAARRHQKGSGAVPSGFKK-QKDLFSGPLLPSDVKDIIEKLWE--------NEFELCS 263
            + TAA++       VP G  + QK         ++++  ++K++E        N F+L +
Sbjct: 188  KSTAAKK------VVPPGMAEYQKSFEEAKKHNTELEKHVKKVYEDLHPLRVLNLFKLIT 241

Query: 264  FISDMQQQGFGKKAGH-SIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIY 322
              SD +  G     G   +F    V  PPI  R   +      E   T  L++++ +   
Sbjct: 242  -PSDCELLGINPAEGRPEMFLWQFVPAPPICIRPSVQQDGGSNEDDITTKLAEIV-SMAS 299

Query: 323  LANAYVNQPDNAKVIVARW----MNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
            L  A +++    + I+ +W    + +   VN    G    G      G CQ L+ K+G F
Sbjct: 300  LLRAALHKGQAVQTIMEQWDFLQLQIAMYVNSDVPGLQQPGFGKAIRGFCQRLKGKQGRF 359

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R  L GKRV+++ R+VISPDP L ++E+ +P   A  LTYPERV   N+ KLR  +ING 
Sbjct: 360  RGNLSGKRVDFSGRTVISPDPNLGIDEVAVPILVAKNLTYPERVQRQNIEKLRQCVINGP 419

Query: 439  EIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE----GKMVY 494
             +HPGA   + K S      N K+ +   ++               DNE +    G +V 
Sbjct: 420  NVHPGAQQIIKKDS------NHKISLKFAKR---------------DNEAKFLKIGDVVE 458

Query: 495  RHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFP 554
            RHL+DGD+VL NRQP+LHK SIM+H  ++ +  +T R++   C+ YNADFDGDEMN+H P
Sbjct: 459  RHLEDGDIVLFNRQPSLHKLSIMSHYAKI-RPWRTFRLNECVCNPYNADFDGDEMNLHVP 517

Query: 555  QDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYS 614
            Q E +R EA N++   N    P NG+P+ S  QD I +A LL+ K+ F +R  F  +   
Sbjct: 518  QTEEARTEAINLMGVKNNLSTPKNGEPIISATQDFITAAYLLSNKENFFDRKTFTNICM- 576

Query: 615  SGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRP 674
                               ++  +    LP  PAI KP+ LWTGKQV + ++      RP
Sbjct: 577  ------------------YMVDANLHLQLP-DPAILKPQALWTGKQVFSVLM------RP 611

Query: 675  PFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEE 734
                                               +K + +  +   K ++ V       
Sbjct: 612  -----------------------------------NKQDNILVNVDAKCRDFVPSM---- 632

Query: 735  KEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLL 791
                K  + + E ++  L+I  ++++ G++DK+         + + +   YG + A   +
Sbjct: 633  --VPKGFANDMEANDGWLVIRNSEVMCGLMDKSTVGSGKKDSIFYVILRDYGPDAAVVAM 690

Query: 792  SALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEI 851
            + LS+L   +L   GF+ G+ D+    +  + +   +  +       ++E  +L     I
Sbjct: 691  NRLSKLSARYLTNMGFSIGISDVYPSAELNKSKARLIAAA-------YVECEQL-----I 738

Query: 852  DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
            +  K  + +EK+    G +     + K++ +L     S V      E L      +   +
Sbjct: 739  ESFK-NNTLEKST---GLSMEETLEAKLSGKL-----SQVRGAAGKECLRTLYASSSPLV 789

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            M  SG+KGS +N  Q+ + +GQQ + G RV      +TLP F      P A GF+ + F 
Sbjct: 790  MANSGSKGSAINVAQMVALVGQQIIGGSRVQEGFQDRTLPHFPKHSKQPPAKGFVANSFF 849

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
            TGL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR + G IVQ
Sbjct: 850  TGLTPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSGGGIVQ 909

Query: 1032 FCYGEDGVD 1040
            F +G DG+D
Sbjct: 910  FQFGADGLD 918



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 57/88 (64%), Gaps = 1/88 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            +E   + F +L   K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   MN+T G
Sbjct: 1058 SETTLKKFCELCLEKYSRAKVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMNLTAG 1117

Query: 1180 IPRLQEILTIASKDIKTPVITCPLLVGK 1207
            +PR++EI+  ASK I TP + CPLL  K
Sbjct: 1118 VPRIKEIIN-ASKTIATPFVKCPLLNSK 1144



 Score = 42.4 bits (98), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C TC +    C GHFGH+ L +P ++     L+  +L+ +C  C       A RR+  K 
Sbjct: 73  CDTCDKGLQDCNGHFGHVRLPLPAFHIGYLKLIIMILQNVCKTCARVLLTDAERRQFLKE 132

Query: 58  VRK 60
           +RK
Sbjct: 133 LRK 135


>gi|12642614|gb|AAK00311.1|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga
            brevicollis]
          Length = 1743

 Score =  338 bits (867), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 238/769 (30%), Positives = 374/769 (48%), Gaps = 128/769 (16%)

Query: 281  IFFLGVVLVPPIKFRLPSKGGDSVMEHPQ-TVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
               + V+ VPP+  R   + G+S       T  L  +++ NI L     N      +I  
Sbjct: 166  FMIIEVLPVPPLAVRPSVELGESGHSADDLTYQLGDIIKTNISLQENIANG-ATPHMIEE 224

Query: 340  RWMNLQQSVNVLFDGK-NAAGQRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYACRS 393
                +Q  V  L D       Q    SG     I Q L+ KEG  R  LMGKRV+++ R+
Sbjct: 225  CVEYIQFKVATLMDNNLPHMPQSQQRSGRPIKAISQRLKGKEGRVRGNLMGKRVDFSART 284

Query: 394  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLST 453
            VI+PDP LA++++G+P   A +LT PERVT +N+ K+   + NG   HPGA + + +  T
Sbjct: 285  VITPDPNLAIDQVGVPRTVAAKLTVPERVTNFNLNKMNQYVANGPTQHPGARYIIQEDGT 344

Query: 454  MRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHK 513
                   ++ + I R   +     +QP         G +V RHLQD DV++ NRQPTLHK
Sbjct: 345  -------RIDLHIAR---SHSDRTLQP---------GFIVERHLQDNDVIIFNRQPTLHK 385

Query: 514  PSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQY 573
             S+M H V+VL    T RM+ +  S YNADFDGDEMN+H PQ   SRAE   I+  +   
Sbjct: 386  MSMMGHRVKVLPW-STFRMNLSVTSPYNADFDGDEMNLHVPQSLGSRAEIEEIMMVHKNI 444

Query: 574  VRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRV 633
            + P +  P+  +IQD +  A  +T +D F+ R++   LL         + ++ GK     
Sbjct: 445  LTPQSNRPVMGIIQDTLTVARRMTFRDCFIEREQLMHLLM-------WMPNWDGK----- 492

Query: 634  LISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRF 693
                     +P +PAI  P+ LWTGKQ+++ ++                           
Sbjct: 493  ---------IP-VPAIVAPKELWTGKQLVSMII--------------------------- 515

Query: 694  NADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLL 753
                   R+ N +GK S     H+DK  +    +                   + + K++
Sbjct: 516  ------PRRINLEGKHST----HEDKVDRATPYL------------------TVHDTKVI 547

Query: 754  IYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
            I K  L+ G++ K+       G++H +   +G   A      +  +   +L +HG + G+
Sbjct: 548  ISKGVLISGILCKSMLGAKGGGVIHAITVEHGLEEARQFYGNIQTVINNWLLIHGHSIGI 607

Query: 812  DDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAA 871
             D +  +D  +         EE+ +       EL   A+ D IK K          G+  
Sbjct: 608  GDAVADQDTNKR-------IEELTQEATRSVDELITKAQADDIKPKP---------GNTV 651

Query: 872  VAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHL 931
               F++++ + LN      ++N+         +  N    M+T+G+KG  +N  QI + +
Sbjct: 652  RETFEVEVNTVLND-----MVNKAGKSAQNSLSIHNNFKAMSTAGSKGGPINISQIIACV 706

Query: 932  GQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLV 991
            GQQ +EGKR+P     +TLP F   D+ P + GF+ + +  GL  QE +FH M GREGL+
Sbjct: 707  GQQNVEGKRIPFGFKYRTLPHFVKDDYGPDSRGFVFNSYFKGLSAQEMFFHAMGGREGLI 766

Query: 992  DTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            DTAVKT+ +GY+QR L+K++E L+++YD S+R+++G ++Q CYGEDG+D
Sbjct: 767  DTAVKTAETGYIQRRLVKSMEGLRLNYDGSIRNSNGDLIQLCYGEDGMD 815



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/81 (56%), Positives = 60/81 (74%), Gaps = 3/81 (3%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
             L  V+ +F+ + AQPGE VG LA+QS+GEP+TQMTLNTFHLAG    NVTLG+PRL+EI
Sbjct: 986  ILGEVEKRFMQAQAQPGEMVGALAAQSLGEPATQMTLNTFHLAGVSAKNVTLGVPRLKEI 1045

Query: 1187 LTIASKDIKTPVITCPLLVGK 1207
            + + SK  KTP +   L +G+
Sbjct: 1046 INV-SKKPKTPSMV--LFIGE 1063



 Score = 44.3 bits (103), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)

Query: 11 CPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRKLELII 65
          CPGHFGHI L  PV++      + ++L+ +C +C     S+  VE   ++L+ I+
Sbjct: 1  CPGHFGHIVLAKPVFHAGFLPKIISVLRCVCLYC-----SKLRVEHSDQQLQAIL 50


>gi|312273881|gb|ADQ57310.1| RNA polymerase II largest subunit, partial [Nosema fumiferanae]
          Length = 939

 Score =  338 bits (866), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 243/778 (31%), Positives = 380/778 (48%), Gaps = 129/778 (16%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
              L V+LVPP   R PS   + ++  E   T  LS ++++N YL   Y  +     +I  
Sbjct: 115  LILTVLLVPPPSVR-PSIVMEGMLRAEDDLTHKLSDIIKSNTYLKK-YEMEGAPGHIIRD 172

Query: 340  RWMNLQQSVNVLFDGKNAAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYAC 391
                LQ  V  L D  + +GQ        R + S I   L+ KEG  R  LMGKRV+++ 
Sbjct: 173  YEQLLQFHVATLIDN-DISGQPQALQKSGRPLKS-ISARLKGKEGRVRGNLMGKRVDFSA 230

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            RSVI+ D  +++ E+G+P   A   T+PE++TP+N+ KL   + NG   +PGA +Y+ + 
Sbjct: 231  RSVITADANISLEEVGVPLEVAKIHTFPEKITPFNIEKLEKLVANGPNEYPGA-NYVIRT 289

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
               R+             L+ +RG I           EG +V RH+Q+GD +L NRQP+L
Sbjct: 290  DGQRI------------DLNFNRGDIKLE--------EGYIVERHMQNGDTILFNRQPSL 329

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK S+M H VRV+ G KT R++ +  S YNADFDGDEMN+H PQ+  S +E   I     
Sbjct: 330  HKMSMMGHKVRVMAG-KTFRLNLSVTSPYNADFDGDEMNLHMPQNYNSISELEEICMVPK 388

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSS---GLGSFTGK 628
            Q + P +  P+  ++QD +      T +D F +++E  Q+LYS         GL S   K
Sbjct: 389  QILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNEMMQVLYSIDFEKYYDIGLDSVI-K 447

Query: 629  PGQRVLISRSEQEVLPLL--PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQ 686
             G+++ +   E  ++ LL  PAI KP+ LWTGKQ+++ +                   P 
Sbjct: 448  KGKKLDMGAKEYSLMALLSKPAIQKPKQLWTGKQILSFI------------------FPN 489

Query: 687  DFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKE 746
             F+K   N  +++D +                                            
Sbjct: 490  VFYKNSSNESRENDLEN------------------------------------------- 506

Query: 747  LSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFL-Q 803
            +S   ++I   +++ G+IDK        GLVH +   +G +     +  +  + T FL  
Sbjct: 507  VSVTSVVICGGEIMSGIIDKKAVGATQGGLVHIIANDFGYSRVTLFIDDIQEIITKFLMN 566

Query: 804  MHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            +H F+ G+ D +   D  +  K  +  S++                 +D I  K++  + 
Sbjct: 567  IHVFSMGIGDTVADSDTLKYVKQAIEKSKD----------------SVDEIIRKAQNNRL 610

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK-NWISLMTTSGAKGSKV 922
             R  G      F+ ++   LNK    S           K   K N +  M  SG+KGS +
Sbjct: 611  DRLPGMTMKESFESQVNYVLNKARDVS------GTSTQKSLNKCNNMKAMVLSGSKGSFI 664

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  Q+++ +GQQ +EGKR+P   + +TLP F   D++ ++ GF+ + +L+GL P+E++FH
Sbjct: 665  NISQVTACVGQQNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFH 724

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             M GREGL+DTA+KT+ +GY+QR L+K +E   +  D SVR A G++ Q+ YGEDG D
Sbjct: 725  AMGGREGLIDTAIKTAETGYIQRRLVKAMEDATVRLDGSVRGATGNVYQYLYGEDGFD 782


>gi|241955144|ref|XP_002420293.1| DNA-directed RNA polymerase III subunit, putative [Candida
            dubliniensis CD36]
 gi|223643634|emb|CAX42517.1| DNA-directed RNA polymerase III subunit, putative [Candida
            dubliniensis CD36]
          Length = 1448

 Score =  338 bits (866), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 235/762 (30%), Positives = 373/762 (48%), Gaps = 116/762 (15%)

Query: 286  VVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA---NAYVNQPDNAKVIVARWM 342
            V + P +     S   D  ++  + V  S +++A I      N  + Q D  ++ VA ++
Sbjct: 265  VCIRPSVMMDAQSNEDDLTVKLTEIVWTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYI 324

Query: 343  NLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLA 402
            N   +   L  G   A         CQ L+ K+G FR  L GKRV+++ R+VISPDP L 
Sbjct: 325  NSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLK 384

Query: 403  VNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM 462
            ++E+ +P   A  LTYPE+ T +N  KL+  I+NG +IHPGA + + +      P  + +
Sbjct: 385  IDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLIVNGPDIHPGANYVMKQ----NEPGKRNL 440

Query: 463  RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
            R   G ++  ++   +           G +V RH++DGDVVL NRQP+LH+ SI++H  +
Sbjct: 441  R--FGDRVKLAKTLQI-----------GDIVERHIEDGDVVLFNRQPSLHRLSILSHYAK 487

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            + +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA N++   N  + P +G+P+
Sbjct: 488  I-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPI 546

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
             +  QD I  + L++ KD+F +R    QLL  S +S + +  F   P             
Sbjct: 547  IAATQDFITGSYLISHKDSFFDRATLVQLL--SMMSDADI-QFDIPP------------- 590

Query: 643  LPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRK 702
                P I+KP  LWTGKQV + ++                               + ++K
Sbjct: 591  ----PTIFKPVMLWTGKQVFSLLI-------------------------------KPNKK 615

Query: 703  KNDKGKLSKTNK-MHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVR 761
             N    L   NK  H  K G   E+                     ++  ++I  + ++ 
Sbjct: 616  SNVVINLDAKNKTFHPPKKGLPNEMSP-------------------NDGFVVIRGSKILS 656

Query: 762  GVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILK 818
            G++DK+   D   + + +T+   YG   A   ++ +++L   FL   GF+ G++D  +  
Sbjct: 657  GLMDKSTLGDGKKHSVFYTILRDYGPEEAAAAMNRMAKLCARFLGNRGFSIGIND--VTP 714

Query: 819  DKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMK 878
              E ++K  L   +   K   L  L      E  P   + +  +A  GG           
Sbjct: 715  ADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGG----------- 763

Query: 879  MTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEG 938
            + S++ +      I EL  + L  P       +M T G+KGS +N  Q+ + +GQQ + G
Sbjct: 764  LLSKVREEVGDVCIREL--DSLNAPL------IMATCGSKGSTLNVSQMVAVVGQQIISG 815

Query: 939  KRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTS 998
             RVP     ++LP F      P++ GF+ + F +GL P E+ FH ++GREGLVDTAVKT+
Sbjct: 816  HRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTA 875

Query: 999  RSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             +GY+ R L+K+LE L   YD +VR++   IVQF YG DG+D
Sbjct: 876  ETGYMSRRLMKSLEDLSSQYDNTVRNSSNGIVQFTYGGDGLD 917



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 63/101 (62%), Gaps = 3/101 (2%)

Query: 1104 DALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTL 1163
            D +  NA     K  SN  A + FL+   +K+  +  +PG  VG + +QS+GEP TQMTL
Sbjct: 1041 DRVTSNAIDQLSKISSN--AVKTFLEQCLYKYSRARVEPGTAVGAIGAQSIGEPGTQMTL 1098

Query: 1164 NTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
             TFH AG   MNVTLG+PR++EI+  ASK I TP+I   L+
Sbjct: 1099 KTFHFAGVASMNVTLGVPRIKEIIN-ASKVISTPIINAVLV 1138



 Score = 42.4 bits (98), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC      C GHFGHI L +PV++   F  + ++L+ IC  C
Sbjct: 67  CSTCHGNLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKNC 110


>gi|238881190|gb|EEQ44828.1| DNA-directed RNA polymerase III largest subunit [Candida albicans
            WO-1]
          Length = 1448

 Score =  337 bits (864), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 234/762 (30%), Positives = 373/762 (48%), Gaps = 116/762 (15%)

Query: 286  VVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA---NAYVNQPDNAKVIVARWM 342
            V + P +     S   D  ++  + V  S +++A I      N  + Q D  ++ VA ++
Sbjct: 265  VCIRPSVMMDAQSNEDDLTVKLTEIVWTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYI 324

Query: 343  NLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLA 402
            N   +   L  G   A         CQ L+ K+G FR  L GKRV+++ R+VISPDP L 
Sbjct: 325  NSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLK 384

Query: 403  VNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM 462
            ++E+ +P   A  LTYPE+ T +N  KL+  ++NG +IHPGA + + +      P  + +
Sbjct: 385  IDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPGANYVMKQ----NEPGKRNL 440

Query: 463  RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
            R   G ++  ++   +           G +V RH++DGDVVL NRQP+LH+ SI++H  +
Sbjct: 441  R--FGDRVKLAKTLQI-----------GDVVERHIEDGDVVLFNRQPSLHRLSILSHYAK 487

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            + +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA N++   N  + P +G+P+
Sbjct: 488  I-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPI 546

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
             +  QD I  + L++ KD+F +R    QLL  S +S + +  F   P             
Sbjct: 547  IAATQDFITGSYLISHKDSFFDRATLVQLL--SMMSDADI-QFDIPP------------- 590

Query: 643  LPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRK 702
                P I+KP  LWTGKQV + ++                               + ++K
Sbjct: 591  ----PTIFKPVMLWTGKQVFSLLI-------------------------------KPNKK 615

Query: 703  KNDKGKLSKTNK-MHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVR 761
             N    L   NK  H  K G   E+                     ++  ++I  + ++ 
Sbjct: 616  SNVVINLDAKNKTFHPPKKGLPNEMSP-------------------NDGFVVIRGSKILS 656

Query: 762  GVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILK 818
            G++DK+   D   + + +T+   YG   A   ++ +++L   FL   GF+ G++D  +  
Sbjct: 657  GLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGIND--VTP 714

Query: 819  DKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMK 878
              E ++K  L   +   K   L  L      E  P   + +  +A  GG           
Sbjct: 715  ADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGG----------- 763

Query: 879  MTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEG 938
            + S++ +      I EL  + L  P       +M T G+KGS +N  Q+ + +GQQ + G
Sbjct: 764  LLSKVREEVGDVCIREL--DSLNAPL------IMATCGSKGSTLNVSQMVAVVGQQIISG 815

Query: 939  KRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTS 998
             RVP     ++LP F      P++ GF+ + F +GL P E+ FH ++GREGLVDTAVKT+
Sbjct: 816  HRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTA 875

Query: 999  RSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             +GY+ R L+K+LE L   YD +VR++   IVQF YG DG+D
Sbjct: 876  ETGYMSRRLMKSLEDLSSQYDNTVRNSSNGIVQFTYGGDGLD 917



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 56/82 (68%), Gaps = 1/82 (1%)

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
            A + FL+   +K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR
Sbjct: 1058 AVKTFLEQCLYKYSRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPR 1117

Query: 1183 LQEILTIASKDIKTPVITCPLL 1204
            ++EI+  ASK I TP+I   L+
Sbjct: 1118 IKEIIN-ASKVISTPIINAVLV 1138



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC      C GHFGHI L +PV++   F  + ++L+ IC  C
Sbjct: 67  CSTCHGNLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKSC 110


>gi|33326219|gb|AAQ08519.1| RNA polymerase II largest subunit [Psilotum nudum]
          Length = 1013

 Score =  337 bits (864), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 242/709 (34%), Positives = 345/709 (48%), Gaps = 134/709 (18%)

Query: 344  LQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
            LQ  +   FD    G+  A QR       ICQ L+ KEG  R  LMGKRV+++ R+VI+P
Sbjct: 228  LQFHIATYFDNDLPGQPRATQRSGRPIKSICQRLKAKEGRIRGNLMGKRVDFSARTVITP 287

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DP + ++E+G+P   AL LTYPE VTP+N+ +L++ +  G   HP              P
Sbjct: 288  DPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGP--HP--------------P 331

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSI 516
            P K     I R+ D  R  +    K SD   E G  V RHL DGD VL NRQP+LHK SI
Sbjct: 332  PGKTGARYIIRE-DGQRLDLRFLKKSSDRHLELGYKVERHLNDGDFVLFNRQPSLHKMSI 390

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            M H +R++    T R++ +  S YNADFDGDEMN+H PQ   +RAE   ++      V P
Sbjct: 391  MGHKIRIMPF-STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 449

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
             +  P+  ++QD ++    +TK+DTF+ +D F  +L            F GK        
Sbjct: 450  QSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFMNILM-------WWEDFDGK-------- 494

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
                  +P  P I KP+PLWTGKQ+ + +                  +P+     RF+A 
Sbjct: 495  ------IP-APTILKPKPLWTGKQLFSLI------------------IPKQINLIRFSA- 528

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
                               H D      EV E  PG                +  + I K
Sbjct: 529  ------------------WHLD-----SEVGEITPG----------------DTVVRIEK 549

Query: 757  NDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             +L+ G + K      G  L+H + E  G + A   L     L   +L  HGF+ G+ D 
Sbjct: 550  GELISGTLCKKTLGTSGGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQHGFSIGIGD- 608

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGG-GDAAVA 873
             I      E+ N     E I K  + E  EL          +K   EK +    G   + 
Sbjct: 609  TIADAATMEKIN-----ESIAKAKN-EVKEL----------IKMAQEKQLEAEPGRTTME 652

Query: 874  YFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHL 931
             F+ ++   LN  +  + S     LSE        N +  M T+G+KGS +N  Q+ + +
Sbjct: 653  SFENRVNQVLNRARDDAGSSAQRSLSES-------NNVKAMVTAGSKGSFINISQMIACV 705

Query: 932  GQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLV 991
            GQQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL PQE++FH M GREGL+
Sbjct: 706  GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 765

Query: 992  DTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            DTAVKTS +GY+QR L+K +E + + YD +VR++ G +++F YGEDG+D
Sbjct: 766  DTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIEFLYGEDGMD 814


>gi|448112703|ref|XP_004202165.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
 gi|359465154|emb|CCE88859.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
          Length = 1454

 Score =  337 bits (864), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 232/761 (30%), Positives = 375/761 (49%), Gaps = 114/761 (14%)

Query: 286  VVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANI---YLANAYVNQPDNAKVIVARWM 342
            V + P +     S   D  ++  + V  S +++A I      N  + Q D  ++ VA ++
Sbjct: 265  VCIRPSVMMDTQSNEDDLTVKLTEIVWTSSLIRAGIEKGITINNLMEQWDYLQLSVAMYI 324

Query: 343  NLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLA 402
            N   + +        +       G CQ L+ K+G FR  L GKRV+++ R+V+SPDP L 
Sbjct: 325  NSDAANSAFLPSSGGSKSAKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVVSPDPNLR 384

Query: 403  VNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM 462
            ++E+ +P   A  LTYPE  T +N  KL+  I+NG   +PGA +YL     M+     K 
Sbjct: 385  IDEVAVPDRVAKVLTYPEMCTRYNRKKLQRLILNGPNTYPGA-NYL-----MKQNEAAKR 438

Query: 463  RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
             +  G ++  ++           N   G +V RH++DGDVVL NRQP+LH+ SI++H  +
Sbjct: 439  NLRFGDRVKLAK-----------NLHIGDVVERHIEDGDVVLFNRQPSLHRLSILSHFAK 487

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA N++   N  + P +G+P+
Sbjct: 488  V-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAMNLMGVKNNLLTPKSGEPI 546

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
             +  QD I  + L++ KD+F +R    Q+L  S +S + +                + ++
Sbjct: 547  IAATQDFITGSYLISHKDSFYDRAALVQML--SMMSDANV----------------QYDI 588

Query: 643  LPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRK 702
             P  PAI+KP  LWTGKQ+ + ++      RP                            
Sbjct: 589  PP--PAIFKPVMLWTGKQIFSLLI------RP---------------------------- 612

Query: 703  KNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRG 762
                   +K +K+  +   K K  +    G   E  +N        +  ++I  + ++ G
Sbjct: 613  -------NKNSKVLINLDAKNKTFIPPLKGFPNEMSQN--------DGFVVIRGSQILSG 657

Query: 763  VIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKD 819
            V+DK+   D   + + +T+   YG + A   ++ +++L   F+   GF+ G++D  ++  
Sbjct: 658  VMDKSLLGDGKKHSVFYTILRDYGPDEAANAMNRMAKLCARFMGNRGFSIGIND--VIPG 715

Query: 820  KERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKM 879
             E ++K  L   +   K   L  L      E  P   + +  +A  GG           +
Sbjct: 716  SELKQKKELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGG-----------L 764

Query: 880  TSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGK 939
             S++ +      I EL S         N   +M T G+KGS +N  Q+ + +GQQ + G 
Sbjct: 765  LSKVREQVGEICIKELDS--------ANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGN 816

Query: 940  RVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSR 999
            RVP     ++LP F      P++ GF+ + F +GL P E+ FH ++GREGLVDTAVKT+ 
Sbjct: 817  RVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLSPTEFLFHAISGREGLVDTAVKTAE 876

Query: 1000 SGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            +GY+ R L+K+LE L   YD +VR++   IVQF YG DG+D
Sbjct: 877  TGYMSRRLMKSLEDLSTQYDNTVRNSSNGIVQFTYGGDGLD 917



 Score = 84.0 bits (206), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 56/85 (65%), Gaps = 1/85 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            +E A + FL    +K+  +  +PG  VG + + S+GEP TQMTL TFH AG   MNVTLG
Sbjct: 1054 SEKAIRSFLDQCIYKYFRAKVEPGTAVGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLG 1113

Query: 1180 IPRLQEILTIASKDIKTPVITCPLL 1204
            +PR++EI+  ASK I TP+I   L+
Sbjct: 1114 VPRIKEIIN-ASKVISTPIINSVLV 1137



 Score = 43.1 bits (100), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC      C GHFGHI L +PV++   F  + ++L+ IC  C
Sbjct: 67  CSTCHGNLASCHGHFGHIRLALPVFHVGYFKNIMSVLQSICKNC 110


>gi|221482258|gb|EEE20613.1| DNA-directed RNA polymerase III largest subunit, putative [Toxoplasma
            gondii GT1]
          Length = 1747

 Score =  337 bits (864), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 258/821 (31%), Positives = 379/821 (46%), Gaps = 153/821 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSK-- 299
            L P  VK+++E++  +E E+   +S  +              L  +LVPP   R PS   
Sbjct: 295  LDPLYVKNLLERIRPSECEILDIVSPEK------------LLLSRLLVPPSCIR-PSVTI 341

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
            G     E   T +LS + + N  L  ++V    +    +  W  LQ     L +    A 
Sbjct: 342  GEQGTTEDDLTCVLSDIAELNNVL-QSHVQAGFHTNQFLGIWEFLQLQCTRLINADAPAV 400

Query: 360  QRDMAS--------GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
             + +AS        GICQ L+ KEG FR  L GKRV+++ R+VISPDP   V E+ +P +
Sbjct: 401  SQLLASKNISKPGRGICQRLKGKEGRFRGNLSGKRVDFSGRTVISPDPNANVYEVVVPEW 460

Query: 412  FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLD 471
             A RLT+PERV   N+  LR +++ G    PGA  Y++K+   +       R  +   L 
Sbjct: 461  VAKRLTFPERVNRVNIEVLRAAVLKGCSDWPGAC-YVNKVDGSKCSLRYANRRQVAENLQ 519

Query: 472  TSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLR 531
                              G +V RHL +GDVVL NRQP+LH+ SIMAH  RV+   +T R
Sbjct: 520  I-----------------GDVVERHLCNGDVVLFNRQPSLHRMSIMAHRARVMPW-RTFR 561

Query: 532  MHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIV 591
             +   CS YNADFDGDEMN+H PQ   +RAEA  ++   N  V P NG+PL +  QD + 
Sbjct: 562  FNECVCSPYNADFDGDEMNLHLPQTHEARAEALYLMGVVNNLVTPKNGEPLIAATQDFLS 621

Query: 592  SAALLTKKDTFLNRDEFCQLL--YSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            S+ +LT KD FL RD+FC +   ++ G+S   L                        P I
Sbjct: 622  SSYMLTHKDVFLTRDQFCLICSYFTDGLSRVDLPP----------------------PTI 659

Query: 650  WKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKL 709
             KP  LWTGKQVI+ +L      RP                              ++   
Sbjct: 660  LKPVELWTGKQVISVLL------RP------------------------------NRNSF 683

Query: 710  SKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQ 768
               N   K++      +    PGE                +  +I+++ +LV G I K  
Sbjct: 684  VMVNFQLKEREFSAARI---PPGEAPFM---------CPSDAYVIFRHSELVAGCIGKKV 731

Query: 769  FAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKN 826
              D  +GL   +        A   +  +++L   +    G T G+DD+         +K+
Sbjct: 732  LGDAKFGLFFHLIRDNSPAQAAACMGRIAKLSARWFANRGMTIGIDDVTPSPTLLAAKKD 791

Query: 827  HL-HGSEEIGKRVHLE---ALELEDGAEID---PIKLKSEIEKAMRGGGDAAVAYFDMKM 879
             L HG   + + + +    AL+   G  ++    +++KS ++      G A         
Sbjct: 792  ILNHGYNLVAQEIQMYKKGALQPHPGCTLEQTLEVRVKSILDDLRNEAGKAC-------- 843

Query: 880  TSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGK 939
                                +L P  K  I  M  SGAKG+ +N  Q+ + +GQQ + G+
Sbjct: 844  ------------------NRVLHPLNKPLI--MFNSGAKGALINIAQMIACVGQQNVSGQ 883

Query: 940  RVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSR 999
            R+      +TLP F       ++ GF+   F +GL+P E++FH M+GREGLVDTAVKT+ 
Sbjct: 884  RIQNGFVSRTLPHFPLNCRDAKSRGFVASSFYSGLQPDEFFFHTMSGREGLVDTAVKTAE 943

Query: 1000 SGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            +GY+QR L+K LE L I YD SVR +DG IVQF YG+DG++
Sbjct: 944  TGYMQRRLMKALEDLSIRYDNSVRTSDGQIVQFVYGDDGLN 984



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 58/79 (73%), Gaps = 1/79 (1%)

Query: 1126 DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1185
            +FL+    K+V ++++ GE VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR++E
Sbjct: 1363 EFLRCSWRKYVKAISEAGEAVGAMGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKE 1422

Query: 1186 ILTIASKDIKTPVITCPLL 1204
            I+  A K I+TP+I  PL+
Sbjct: 1423 IINAAQK-IQTPIIVVPLV 1440



 Score = 45.1 bits (105), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG     C GH+G++DL  PVY+   F  +  +L  IC  C        + EK + +
Sbjct: 166 CQTCGHTLLQCTGHWGYMDLQAPVYHVGYFKYVLQILYCICKTCAALLQPPEQKEKLLLR 225

Query: 61  L 61
           +
Sbjct: 226 I 226


>gi|294659690|ref|XP_462102.2| DEHA2G12980p [Debaryomyces hansenii CBS767]
 gi|218511816|sp|Q6BI69.2|RPC1_DEBHA RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
            polymerase III subunit C1; AltName: Full=DNA-directed RNA
            polymerase III largest subunit
 gi|199434160|emb|CAG90588.2| DEHA2G12980p [Debaryomyces hansenii CBS767]
          Length = 1457

 Score =  337 bits (864), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 228/767 (29%), Positives = 379/767 (49%), Gaps = 125/767 (16%)

Query: 286  VVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANI---YLANAYVNQPDNAKVIVARWM 342
            V + P +     S   D  ++  + V  S +++A I      N  + Q D  ++ VA ++
Sbjct: 265  VCIRPSVMMDAQSNEDDLTIKLTEIVWTSSLIKAGIEKGISINNLMEQWDYLQLSVAMYI 324

Query: 343  NLQQSVNVLFDGKNAAGQRDM-ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYL 401
            N   +   L        +      G CQ L+ K+G FR  L GKRV+++ R+VISPDP L
Sbjct: 325  NSDSANPALLPSSGGGSKSSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNL 384

Query: 402  AVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKK 461
             ++E+ +P   A  LTYPE+ T +N  KL+  I++G  +HPGA + L +  + +      
Sbjct: 385  KIDEVAVPDRVAKVLTYPEKCTRYNRKKLQKLILSGPNVHPGANYLLKQNESAKRNLRFG 444

Query: 462  MRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVV 521
             R+ + + L                   G +V RH++DGD+VL NRQP+LH+ SI++H  
Sbjct: 445  DRVKLAKNLHI-----------------GDVVERHIEDGDIVLFNRQPSLHRLSILSHYA 487

Query: 522  RVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDP 581
            ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA N++   N  + P +G+P
Sbjct: 488  KI-RPWRTFRLNECVCTPYNADFDGDEMNIHVPQTEEARAEAINLMGVKNNLLTPKSGEP 546

Query: 582  LRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQE 641
            + +  QD I  + L++ KD+F +R    QLL                     ++S ++ +
Sbjct: 547  IIAATQDFITGSYLVSHKDSFFDRASLVQLL--------------------CMMSDADIQ 586

Query: 642  VLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDR 701
                 PAI+KP  LWTGKQV + ++                               + ++
Sbjct: 587  FDIPPPAIFKPVMLWTGKQVFSLLI-------------------------------KPNK 615

Query: 702  KKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVR 761
            K N    L   NK +   +       +G P E              ++  ++I  + ++ 
Sbjct: 616  KSNVVINLDAKNKTYTPPA-------KGFPNEMSP-----------NDGFVIIRGSQILS 657

Query: 762  GVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILK 818
            GV+DK+   D   + + +T+   YG + A   ++ +++L   +L   GF+ G++D++   
Sbjct: 658  GVMDKSTLGDGKKHSVFYTILRDYGPDEAANAMNRMAKLCARYLGNRGFSIGINDVIPGS 717

Query: 819  DKERERKNHLHGSEEIGKRVHLEALELED-----GAEIDPIKLKSEIEKAMRGGGDAAVA 873
            D ++++       E + ++ +L+  EL D       E  P   + +  +A  GG      
Sbjct: 718  DLKQKK-------ELMVEQAYLKCDELIDLYNRGNLETQPGCNEEQTLEAKIGG------ 764

Query: 874  YFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQ 933
                 + S++ +      INEL S         N   +M T G+KGS +N  Q+ + +GQ
Sbjct: 765  -----LLSKVREEVGEICINELDS--------ANAPLIMATCGSKGSTLNVSQMVAVVGQ 811

Query: 934  QELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDT 993
            Q + G RVP     ++LP F      P++ GF+ + F +GL P E+ FH ++GREGLVDT
Sbjct: 812  QIISGNRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLTPPEFLFHSISGREGLVDT 871

Query: 994  AVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            AVKT+ +GY+ R L+K+L+ L   YD++VR++   IVQF YG DG+D
Sbjct: 872  AVKTAETGYMSRRLMKSLDDLSAQYDHTVRNSSNGIVQFTYGGDGLD 918



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 1/78 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            FL+   +K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR++EI
Sbjct: 1062 FLEQCIYKYSRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI 1121

Query: 1187 LTIASKDIKTPVITCPLL 1204
            +  ASK I TP+I   L+
Sbjct: 1122 IN-ASKVISTPIINSVLV 1138


>gi|449525688|ref|XP_004169848.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit rpc1-like, partial [Cucumis sativus]
          Length = 693

 Score =  337 bits (864), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 236/692 (34%), Positives = 346/692 (50%), Gaps = 130/692 (18%)

Query: 365  SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTP 424
            +G  Q L+ K+G FR  L GKRV +  R+VISPDP L + E+ +P + A  LTYPERVT 
Sbjct: 32   AGFVQRLKGKQGRFRGNLCGKRVEFTGRTVISPDPNLKITEVAVPIHMARILTYPERVTR 91

Query: 425  WNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKD- 483
             N+ KLR  + NG + +PGA                     + R LD S  +++  G+  
Sbjct: 92   HNIEKLRQCVSNGPDKYPGA--------------------RMLRHLDGSMRSLMISGRKR 131

Query: 484  -SDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNA 542
             +D    G++V RHL+DGDVVL NRQP+LH+ SIM H VRV+   +TLR + + C+ YNA
Sbjct: 132  LADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPW-RTLRFNESVCNPYNA 190

Query: 543  DFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTF 602
            DFDGDEMN+H PQ E +R EA  ++   N    P NG+ L +  QD + S+ L+T+KDTF
Sbjct: 191  DFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF 250

Query: 603  LNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI 662
             +R  F           S + S+ G     V         LP  PA+ KP  LWTGKQ+ 
Sbjct: 251  YDRAAF-----------SLMCSYMGDGMDLV--------DLP-TPALVKPIELWTGKQLF 290

Query: 663  TAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGK 722
            + ++                  P    K   N              L+   K +    G 
Sbjct: 291  SVLVR-----------------PHASMKVYLN--------------LTVKEKSYSKVKGN 319

Query: 723  KKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQFADY---GLVHTV 778
            +KE                 +E     +  + ++N +L+ G + KA   +    GL   +
Sbjct: 320  EKE-----------------RETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSVL 362

Query: 779  QELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL-----LILKDKERERKNHLHGSEE 833
               Y ++ A   ++ L++L   ++  HGF+ G+DD+     L+ K+K       L G  +
Sbjct: 363  LRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLVKKNK----XTILEGYRD 418

Query: 834  IGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN--KHTSSSV 891
              K+++     L +   + P             G DAA +  + K+T  LN  +  +++V
Sbjct: 419  CDKQIN-----LFNTGNLPP-----------EAGCDAAQS-LESKITQILNGIREATANV 461

Query: 892  INELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLP 951
              + L         +N   +M+  G+KGS +N  Q+ + +GQQ + G+R P     ++LP
Sbjct: 462  CMQNLH-------WRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLP 514

Query: 952  SFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 1011
             F      P A GF+ + F +GL   E++FH M GREGLVDTAVKT+ +GY+ R LIK L
Sbjct: 515  HFRRKAKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKAL 574

Query: 1012 ECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            E L I YD SVR+A G IVQFCYG+DG+D  Q
Sbjct: 575  EDLSIHYDSSVRNAGGCIVQFCYGDDGMDPAQ 606


>gi|119872216|ref|YP_930223.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum islandicum DSM
            4184]
 gi|119673624|gb|ABL87880.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum islandicum DSM
            4184]
          Length = 884

 Score =  337 bits (864), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 276/846 (32%), Positives = 393/846 (46%), Gaps = 167/846 (19%)

Query: 230  GFKKQKDLFSGP--------------LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGK 275
            G+K+ K  F  P              L P  ++D + K+   + EL      + +  +  
Sbjct: 159  GYKRNKIRFERPYYFYEETEEGALVRLDPETLRDRLAKIPNEDLELLGINPSVARPEWA- 217

Query: 276  KAGHSIFFLGVVLVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAY-VNQPD 332
                    L V+ VPP   R PS   +S +  E   T  L  +++ N  L  A     P 
Sbjct: 218  -------ILKVLPVPPPHVR-PSIQLESGVRSEDDLTHKLVDIIRMNEKLKIAIETGAPT 269

Query: 333  NAKVIVARWMNLQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKR 386
            N  V+   W  LQ  +   FD    G   A  R      GI Q L+ KEG FR  L GKR
Sbjct: 270  N--VVDNLWDLLQYHIATYFDNELPGIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKR 327

Query: 387  VNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATH 446
            VN++ R+VISPDP++++NE+G+P   A  LT PERVTPWNV  LR+ +I G E  PGA +
Sbjct: 328  VNFSARTVISPDPHISINEVGVPYDVAKILTVPERVTPWNVDILREYVIRGPETWPGANY 387

Query: 447  YLDKLSTMRLPPNKKMRISIGRKLD----TSRGAIVQPGKDSDNEFEGKMVYRHLQDGDV 502
             +         P        GR++D      R A+      ++    G +V RHL+DGD+
Sbjct: 388  VVT--------PE-------GRRIDLRYVKDRRAL------AERLAPGWIVERHLRDGDI 426

Query: 503  VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
            VL NRQP+LH+ S+M H+V+VL G +T R+H A C  YNADFDGDEMN+H PQ E +RAE
Sbjct: 427  VLFNRQPSLHRVSMMGHLVKVLPG-RTFRLHLAVCPPYNADFDGDEMNLHVPQTEEARAE 485

Query: 563  AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL 622
            A  ++      + P  G  +    QD+I+ A +L+ K TFL + E   LL        G 
Sbjct: 486  ARTLMLVEKHIITPRYGGAIIGARQDYIIGAYILSHKSTFLTKKEVAYLL--------GA 537

Query: 623  GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGG 682
            G     P +               PAI  P  LWTGKQ    +++H              
Sbjct: 538  GKSVEDPPE---------------PAILHPVELWTGKQ----IISHF------------- 565

Query: 683  KLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKS 742
             LP+D    +  A K            SK    +K                         
Sbjct: 566  -LPKDLNWVQPTAFK------------SKCQDAYKCNG---------------------- 590

Query: 743  KEKELSEEKLLIYKNDLVRGVIDK----AQFADYGLVHTVQELYGSNTAGTLLSALSRLF 798
                  +E +++   +LV+GV+DK    A+  D  L H +   Y    A   L +  R+F
Sbjct: 591  ------DEWIIVINGNLVKGVLDKKSIGAEQVD-SLWHRIARDYPPEIARQWLDSSLRVF 643

Query: 799  TVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKS 858
              FL + GFT G+D +  L D+  +  N +   EE  K+ +    E   G          
Sbjct: 644  LRFLDLRGFTFGMDSVY-LPDEAYKELNMI--IEESLKKAYTLVEEFRSGRL-------- 692

Query: 859  EIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAK 918
               +AM   G      F+ K+T  L+K    +     + E  +K   + +  LM  +GA+
Sbjct: 693  ---EAM--PGFTVEETFENKITEILSKVREDATT---VVEKYVKRDAEGY--LMAKTGAR 742

Query: 919  GSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQE 978
            GS VN  Q+ + LGQQ + G+R+ R    + LP F   D  P  GGF+   F  GL P E
Sbjct: 743  GSIVNIVQMVATLGQQTIRGERIRRGYRTRVLPHFPAGDIGPFVGGFVKRCFRCGLTPVE 802

Query: 979  YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDG 1038
            Y+FH  AGR+GL+DTAV+T++SGY+QR LI  L+ +  +YD +VR     ++Q  YGEDG
Sbjct: 803  YFFHAAAGRDGLIDTAVRTAQSGYMQRRLINALQDVYTAYDGTVRFGGAILLQPLYGEDG 862

Query: 1039 VDVHQT 1044
            VDV ++
Sbjct: 863  VDVSRS 868



 Score = 57.0 bits (136), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 27/183 (14%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCGQ   +CPGHFGHI+LV PV +     ++Y +L+  C  C        E+++   +
Sbjct: 67  CETCGQTHDVCPGHFGHIELVKPVIHVGFARIIYDILRTTCPNCGRIMLKDEEIQRYRER 126

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNY--DNVRNLKPQEWT 118
           L   +KG     + L L+L           +  K+S  M  P   Y  + +R  +P  + 
Sbjct: 127 LTK-LKGK---WRLLALNL--------HEKIRKKASERMTCPHCGYKRNKIRFERPYYF- 173

Query: 119 SLQFAEAKLALLQFLKIETTKCGNCKAK---------NPRISKPTFGWIHMNGMPHADIR 169
              + E +   L  L  ET +    K           NP +++P +  + +  +P   +R
Sbjct: 174 ---YEETEEGALVRLDPETLRDRLAKIPNEDLELLGINPSVARPEWAILKVLPVPPPHVR 230

Query: 170 ANL 172
            ++
Sbjct: 231 PSI 233


>gi|58268624|ref|XP_571468.1| DNA-directed RNA polymerase iii largest subunit [Cryptococcus
            neoformans var. neoformans JEC21]
 gi|57227703|gb|AAW44161.1| DNA-directed RNA polymerase iii largest subunit, putative
            [Cryptococcus neoformans var. neoformans JEC21]
          Length = 1466

 Score =  337 bits (863), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 254/809 (31%), Positives = 402/809 (49%), Gaps = 122/809 (15%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPP--IKFRLPSK 299
            L P  V ++ E++   + EL S   ++ +           +    + VPP  I+  + S+
Sbjct: 226  LNPLKVLNLFERITAEDCELLSLHPEVGRP--------EDYIWQYISVPPPCIRPSVASE 277

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G++  E   T  L++++  N  LA   ++     ++I + W  L Q+V  L+    A G
Sbjct: 278  AGNN--EDDLTAKLAEIVNYNNTLA-LMMDLGRGIEMISSNWEVLGQAV-ALYINSQAPG 333

Query: 360  QRDMAS----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALR 415
             + + S    G  Q L+ K+G FR  L GKRV+++ R+VI PDP L ++E+ +P   A++
Sbjct: 334  MQTIGSKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVIGPDPNLRIDEVAVPEKVAVK 393

Query: 416  LTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRG 475
            L+YPERVT +N+  +R +IING+++HPGA     K           +RIS+    D    
Sbjct: 394  LSYPERVTDYNLQLMRQAIINGSKLHPGANVLERKHEN-----GSTVRISLNVMKD---- 444

Query: 476  AIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY 534
              ++  K    E + G +V+RH++DGD+VL NRQP+LHK SIM H VRV +  +T R++ 
Sbjct: 445  --LEARKRYARELQIGDIVHRHVRDGDIVLFNRQPSLHKLSIMCHRVRV-RPWRTFRLNE 501

Query: 535  ANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAA 594
              C+ YNADFDGDEMN+H PQ E +R EA  +++     V P NG+P+ + IQD I +A 
Sbjct: 502  CVCNPYNADFDGDEMNLHVPQTEEARTEALELMSVKKNLVTPRNGEPIIAAIQDFITAAY 561

Query: 595  LLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEP 654
            LL+++D F +R +F Q++           S+      ++       E+ P  P IWKP  
Sbjct: 562  LLSRRDRFYDRQQFTQIV-----------SYLDDANLKI-------EMPP--PTIWKPVR 601

Query: 655  LWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNK 714
            LWTGKQ+   ++      RP                                   +K +K
Sbjct: 602  LWTGKQIFNLLM------RP-----------------------------------NKESK 620

Query: 715  MHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--- 771
            +  +   K + +V+  P +E     + S     ++  L+I  ++++ GV DK    D   
Sbjct: 621  VLVNLEAKCRTLVD--PAKEDRFPPDMSP----NDGYLVIQNSEIMCGVFDKNTVGDGKK 674

Query: 772  YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGS 831
              +   +   YG   A   ++ L+++   +L   GF+ G++D++            LH S
Sbjct: 675  NSVFGVILRDYGPEEAAQAMNRLAKIAARWLANIGFSLGINDVI--------PGPILHAS 726

Query: 832  EEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSV 891
                K   +E    E    ID  K K ++E A     +A +     K  S + +      
Sbjct: 727  ----KDARVEKAYDECDVFIDLAK-KGKLENAPGCDQEATLESKISKTLSDVREAVGKIC 781

Query: 892  INELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLP 951
            + EL        +  N   +M T G+KGS +N  Q+ + +GQQ + G RV      ++LP
Sbjct: 782  MQEL--------SRHNAPLIMATCGSKGSVINVAQMVACVGQQIIGGSRVRNGFQDRSLP 833

Query: 952  SFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 1011
             F      P + GF+ + F +GL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K L
Sbjct: 834  HFRKKSKNPPSKGFVRNSFFSGLTPPEFLFHAMSGREGLVDTAVKTAETGYMARRLMKAL 893

Query: 1012 ECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            E L   YD SVR++ G IVQF YG+D +D
Sbjct: 894  EDLCTHYDLSVRNSVGGIVQFQYGDDMLD 922



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 85/143 (59%), Gaps = 8/143 (5%)

Query: 1070 KGSHTFVMGR-NQEMIYKKCS-GQLDASNAYIMELPDALKDNAEKFADKFLSN-----EM 1122
            + ++ FV+ +  ++M+ ++ + G  DA +  + E  +AL ++ +    + L N     E 
Sbjct: 1014 ENTYKFVVDKIVKQMVDQRLARGLPDADDEEMAEEYEALLNSDDPAVQRVLENANKVTEA 1073

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
                FL+  + +++ +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR
Sbjct: 1074 QLSSFLENCRIRYLRAKIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPR 1133

Query: 1183 LQEILTIASKDIKTPVITCPLLV 1205
            ++EI+  A+K I TP+I   L +
Sbjct: 1134 IKEIIN-AAKVISTPIIAAELAI 1155



 Score = 43.5 bits (101), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TCG+    C GH+G+I LV+PV++   F     +L  IC  C
Sbjct: 79  CATCGEDTQKCVGHYGYIKLVLPVFHIGYFRPTINMLSCICKTC 122


>gi|68481275|ref|XP_715412.1| hypothetical protein CaO19.3103 [Candida albicans SC5314]
 gi|46437034|gb|EAK96387.1| hypothetical protein CaO19.3103 [Candida albicans SC5314]
          Length = 1448

 Score =  337 bits (863), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 234/762 (30%), Positives = 373/762 (48%), Gaps = 116/762 (15%)

Query: 286  VVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA---NAYVNQPDNAKVIVARWM 342
            V + P +     S   D  ++  + V  S +++A I      N  + Q D  ++ VA ++
Sbjct: 265  VCIRPSVMMDSQSNEDDLTVKLTEIVWTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYI 324

Query: 343  NLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLA 402
            N   +   L  G   A         CQ L+ K+G FR  L GKRV+++ R+VISPDP L 
Sbjct: 325  NSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLK 384

Query: 403  VNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM 462
            ++E+ +P   A  LTYPE+ T +N  KL+  ++NG +IHPGA + + +      P  + +
Sbjct: 385  IDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPGANYVMKQ----NEPGKRNL 440

Query: 463  RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
            R   G ++  ++   +           G +V RH++DGDVVL NRQP+LH+ SI++H  +
Sbjct: 441  R--FGDRVKLAKTLQI-----------GDVVERHIEDGDVVLFNRQPSLHRLSILSHYAK 487

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            + +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA N++   N  + P +G+P+
Sbjct: 488  I-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPI 546

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
             +  QD I  + L++ KD+F +R    QLL  S +S + +  F   P             
Sbjct: 547  IAATQDFITGSYLISHKDSFFDRATLVQLL--SMMSDADI-QFDIPP------------- 590

Query: 643  LPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRK 702
                P I+KP  LWTGKQV + ++                               + ++K
Sbjct: 591  ----PTIFKPVMLWTGKQVFSLLI-------------------------------KPNKK 615

Query: 703  KNDKGKLSKTNK-MHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVR 761
             N    L   NK  H  K G   E+                     ++  ++I  + ++ 
Sbjct: 616  SNVVINLDAKNKTFHPPKKGLPNEMSP-------------------NDGFVVIRGSKILS 656

Query: 762  GVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILK 818
            G++DK+   D   + + +T+   YG   A   ++ +++L   FL   GF+ G++D  +  
Sbjct: 657  GLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGIND--VTP 714

Query: 819  DKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMK 878
              E ++K  L   +   K   L  L      E  P   + +  +A  GG           
Sbjct: 715  ADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGG----------- 763

Query: 879  MTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEG 938
            + S++ +      I EL  + L  P       +M T G+KGS +N  Q+ + +GQQ + G
Sbjct: 764  LLSKVREEVGDVCIREL--DSLNAPL------IMATCGSKGSTLNVSQMVAVVGQQIISG 815

Query: 939  KRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTS 998
             RVP     ++LP F      P++ GF+ + F +GL P E+ FH ++GREGLVDTAVKT+
Sbjct: 816  HRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTA 875

Query: 999  RSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             +GY+ R L+K+LE L   YD +VR++   IVQF YG DG+D
Sbjct: 876  ETGYMSRRLMKSLEDLSSQYDNTVRNSSNGIVQFTYGGDGLD 917



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 56/82 (68%), Gaps = 1/82 (1%)

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
            A + FL+   +K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR
Sbjct: 1058 AVKTFLEQCLYKYSRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPR 1117

Query: 1183 LQEILTIASKDIKTPVITCPLL 1204
            ++EI+  ASK I TP+I   L+
Sbjct: 1118 IKEIIN-ASKVISTPIINAVLV 1138



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC      C GHFGHI L +PV++   F  + ++L+ IC  C
Sbjct: 67  CSTCHGNLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKSC 110


>gi|312273887|gb|ADQ57313.1| RNA polymerase II largest subunit, partial [Nosema disstriae]
          Length = 974

 Score =  337 bits (863), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 242/778 (31%), Positives = 380/778 (48%), Gaps = 129/778 (16%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
              L V+LVPP   R PS   + ++  E   T  LS ++++N YL   Y  +     +I  
Sbjct: 115  LILTVLLVPPPSVR-PSIVMEGMLRAEDDLTHKLSDIIKSNTYLKK-YEMEGAPGHIIRD 172

Query: 340  RWMNLQQSVNVLFDGKNAAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYAC 391
                LQ  V  L D  + +GQ        R + S I   L+ KEG  R  LMGKRV+++ 
Sbjct: 173  YEQLLQFHVATLID-NDISGQPQALQKSGRPLKS-ISARLKGKEGRVRGNLMGKRVDFSA 230

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            RSVI+ D  +++ E+G+P   A   T+PE++TP+N+ KL   + NG   +PGA +Y+ + 
Sbjct: 231  RSVITADANISLEEVGVPLEVAKIHTFPEKITPFNIEKLEKLVSNGPNEYPGA-NYVIRT 289

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
               R+             L+ +RG I           EG +V RH+Q+GD +L NRQP+L
Sbjct: 290  DGQRI------------DLNFNRGDIKLE--------EGYIVERHMQNGDTILFNRQPSL 329

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK S+M H VRV+ G KT R++ +  S YNADFDGDEMN+H PQ+  S +E   I     
Sbjct: 330  HKMSMMGHKVRVMDG-KTFRLNLSVTSPYNADFDGDEMNLHMPQNYNSISELEEICMVPK 388

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSS---GLGSFTGK 628
            Q + P +  P+  ++QD +      T +D F +++E  Q+LYS         GL S   K
Sbjct: 389  QILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNEMMQVLYSIDFEKYYDIGLDSVI-K 447

Query: 629  PGQRVLISRSEQEVLPLL--PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQ 686
             G++  +   E  ++ LL  PAI KP+ LWTGKQ+++ +                   P 
Sbjct: 448  KGKKFDMGAKEYSLMGLLSKPAIQKPKQLWTGKQILSFI------------------FPN 489

Query: 687  DFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKE 746
             F+K   N  +++D                                           ++ 
Sbjct: 490  VFYKNSSNESREND-------------------------------------------QEN 506

Query: 747  LSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFL-Q 803
            +S+  ++I   +++ G+IDK        GLVH +   +G +     +  + ++ T FL  
Sbjct: 507  VSDTSVVICGGEIMSGIIDKKAVGATQGGLVHIIANDFGYSRVTLFIDDIQKIITKFLMN 566

Query: 804  MHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            +H F+ G+ D +   D  +  K  +  S++                 +D I  K++    
Sbjct: 567  IHVFSMGIGDTVADSDTLKYVKQAIEKSKD----------------SVDEIIRKAQNNML 610

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK-NWISLMTTSGAKGSKV 922
             R  G      F+ ++   LNK    S           K   K N +  M  SG+KGS +
Sbjct: 611  DRLPGMTMKESFESQVNYVLNKARDGS------GTSTQKSLNKCNNMKAMVLSGSKGSFI 664

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  Q+++ +GQQ +EGKR+P   + +TLP F   D++ ++ GF+ + +L+GL P+E++FH
Sbjct: 665  NISQVTACVGQQNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFH 724

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             M GREGL+DTA+KT+ +GY+QR L+K +E   +  D SVR A G++ Q+ YG DG D
Sbjct: 725  AMGGREGLIDTAIKTAETGYIQRRLVKAMEDATVRLDGSVRGATGNVYQYLYGGDGFD 782


>gi|68481134|ref|XP_715482.1| hypothetical protein CaO19.10615 [Candida albicans SC5314]
 gi|46437106|gb|EAK96458.1| hypothetical protein CaO19.10615 [Candida albicans SC5314]
          Length = 1448

 Score =  337 bits (863), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 234/762 (30%), Positives = 373/762 (48%), Gaps = 116/762 (15%)

Query: 286  VVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA---NAYVNQPDNAKVIVARWM 342
            V + P +     S   D  ++  + V  S +++A I      N  + Q D  ++ VA ++
Sbjct: 265  VCIRPSVMMDSQSNEDDLTVKLTEIVWTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYI 324

Query: 343  NLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLA 402
            N   +   L  G   A         CQ L+ K+G FR  L GKRV+++ R+VISPDP L 
Sbjct: 325  NSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLK 384

Query: 403  VNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM 462
            ++E+ +P   A  LTYPE+ T +N  KL+  ++NG +IHPGA + + +      P  + +
Sbjct: 385  IDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPGANYVMKQ----NEPGKRNL 440

Query: 463  RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
            R   G ++  ++   +           G +V RH++DGDVVL NRQP+LH+ SI++H  +
Sbjct: 441  R--FGDRVKLAKTLQI-----------GDVVERHIEDGDVVLFNRQPSLHRLSILSHYAK 487

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            + +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA N++   N  + P +G+P+
Sbjct: 488  I-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPI 546

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
             +  QD I  + L++ KD+F +R    QLL  S +S + +  F   P             
Sbjct: 547  IAATQDFITGSYLISHKDSFFDRATLVQLL--SMMSDADI-QFDIPP------------- 590

Query: 643  LPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRK 702
                P I+KP  LWTGKQV + ++                               + ++K
Sbjct: 591  ----PTIFKPVMLWTGKQVFSLLI-------------------------------KPNKK 615

Query: 703  KNDKGKLSKTNK-MHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVR 761
             N    L   NK  H  K G   E+                     ++  ++I  + ++ 
Sbjct: 616  SNVVINLDAKNKTFHPPKKGLPNEMSP-------------------NDGFVVIRGSKILS 656

Query: 762  GVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILK 818
            G++DK+   D   + + +T+   YG   A   ++ +++L   FL   GF+ G++D  +  
Sbjct: 657  GLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGIND--VTP 714

Query: 819  DKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMK 878
              E ++K  L   +   K   L  L      E  P   + +  +A  GG           
Sbjct: 715  ADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGG----------- 763

Query: 879  MTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEG 938
            + S++ +      I EL  + L  P       +M T G+KGS +N  Q+ + +GQQ + G
Sbjct: 764  LLSKVREEVGDVCIREL--DSLNAPL------IMATCGSKGSTLNVSQMVAVVGQQIISG 815

Query: 939  KRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTS 998
             RVP     ++LP F      P++ GF+ + F +GL P E+ FH ++GREGLVDTAVKT+
Sbjct: 816  HRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTA 875

Query: 999  RSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             +GY+ R L+K+LE L   YD +VR++   IVQF YG DG+D
Sbjct: 876  ETGYMSRRLMKSLEDLSSQYDNTVRNSSNGIVQFTYGGDGLD 917



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 56/82 (68%), Gaps = 1/82 (1%)

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
            A + FL+   +K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR
Sbjct: 1058 AVKTFLEQCLYKYSRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPR 1117

Query: 1183 LQEILTIASKDIKTPVITCPLL 1204
            ++EI+  ASK I TP+I   L+
Sbjct: 1118 IKEIIN-ASKVISTPIINAVLV 1138



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC      C GHFGHI L +PV++   F  + ++L+ IC  C
Sbjct: 67  CSTCHGNLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKSC 110


>gi|12642610|gb|AAK00309.1|AF315819_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Botryocladia
            uvarioides]
          Length = 1712

 Score =  337 bits (863), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 243/771 (31%), Positives = 369/771 (47%), Gaps = 136/771 (17%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL---------ANAYVNQPD 332
              L V+ VPP++ R     G    E   T  L  +++ N  L         A+    Q D
Sbjct: 143  LILTVLPVPPLQVRPSVMHGGLRNEDDLTNKLGDIVKNNNMLRDMEAQGTVAHLLREQLD 202

Query: 333  NAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACR 392
              +  VA +MN    +  +       G R + S I Q  + KEG  R  LMGKRV+++ R
Sbjct: 203  LVQYHVATYMN--NEIPGVSQATVRGGSRAIKS-IGQRFKGKEGRVRGNLMGKRVDFSAR 259

Query: 393  SVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLS 452
            +VI+PDP L ++E+G+P   A  LT+PE VT +N  ++R  + NG   +PGA  Y+++  
Sbjct: 260  TVITPDPNLLLHEVGVPYSIAKNLTFPETVTSYNYAEMRKLVENGPTEYPGA-KYIER-- 316

Query: 453  TMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLH 512
                          G+K++ S  A     + S N   G  V RH++DGD VL NRQP+LH
Sbjct: 317  ------------DDGQKVNLSYVA----DRTSTNLEIGFKVIRHIKDGDYVLFNRQPSLH 360

Query: 513  KPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQ 572
            K SIM H +RVL    T R++ +  S YNADFDGDEMN+H PQ   +RAE   ++   + 
Sbjct: 361  KMSIMGHRIRVLP-YSTFRLNLSVTSPYNADFDGDEMNLHVPQSHGTRAEVQELMLVPHC 419

Query: 573  YVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQR 632
             V P    P+  ++QD ++   L T++DTF+ RD    LL         +G + G     
Sbjct: 420  IVSPQGNKPVMGIVQDTLLGCMLFTQRDTFIERDVMMNLLMH-------VGDWDG----- 467

Query: 633  VLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 692
                     V+P  PAI+KP PLWTGKQ+ + +L       PP                 
Sbjct: 468  ---------VVP-EPAIYKPRPLWTGKQIFSLIL-------PPV---------------- 494

Query: 693  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL 752
                            L + N  H              P EE+E       E    + K+
Sbjct: 495  ---------------NLIRYNITH--------------PDEEQE-------EISPGDTKV 518

Query: 753  LIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
             I +  L+ G++DK        GL+H   +  G      ++S +  L   ++   G + G
Sbjct: 519  YISQGQLICGIVDKKTVGSSANGLIHVTWKECGPKVTAMMISQIQVLVNHYVLQRGQSIG 578

Query: 811  VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
            + D +   D      N + G++E                E+  +  K+++++ +   G  
Sbjct: 579  IGDTIADDDTMSNVINTIKGAKE----------------EVKMLIKKAQMKELVLLPGKG 622

Query: 871  AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
             +  F+ ++   LN     S  +    + LLK    N I  M ++G+KGS +N  QI + 
Sbjct: 623  MMESFETEVNKVLNGARDKSGASA--QKSLLK---SNNIKRMVSAGSKGSFINISQICAC 677

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            +GQQ +EGKR+    +G+TLP F   D  P + GF+ + +L GL P E++FH M GREGL
Sbjct: 678  VGQQNVEGKRIAYGFNGRTLPHFATDDLGPESRGFVENSYLRGLTPSEFFFHAMGGREGL 737

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV 1041
            +DTAVKT+ +GY+QR LIK +E + + YD +VR++   +V+F YGEDG+D 
Sbjct: 738  IDTAVKTAETGYIQRRLIKAMEDVMVRYDGTVRNSANHVVEFLYGEDGMDA 788



 Score = 86.3 bits (212), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 58/77 (75%), Gaps = 1/77 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
             L  ++++F+ ++A PGE +G +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI
Sbjct: 990  ILGEIENRFLGAIAAPGENIGAIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREI 1049

Query: 1187 LTIASKDIKTPVITCPL 1203
            + + SK  KTP +T  L
Sbjct: 1050 INV-SKHTKTPSLTVYL 1065



 Score = 45.8 bits (107), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 11 CPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
          CPGHFGHI+L  P+YN        ++L+ +C FC
Sbjct: 1  CPGHFGHIELAKPMYNIGFIKTTLSVLRCVCHFC 34


>gi|134113452|ref|XP_774751.1| hypothetical protein CNBF4300 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50257395|gb|EAL20104.1| hypothetical protein CNBF4300 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1466

 Score =  337 bits (863), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 254/809 (31%), Positives = 402/809 (49%), Gaps = 122/809 (15%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPP--IKFRLPSK 299
            L P  V ++ E++   + EL S   ++ +           +    + VPP  I+  + S+
Sbjct: 226  LNPLKVLNLFERITAEDCELLSLHPEVGRP--------EDYIWQYISVPPPCIRPSVASE 277

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G++  E   T  L++++  N  LA   ++     ++I + W  L Q+V  L+    A G
Sbjct: 278  AGNN--EDDLTAKLAEIVNYNNTLA-LMMDLGRGIEMISSNWEVLGQAV-ALYINSQAPG 333

Query: 360  QRDMAS----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALR 415
             + + S    G  Q L+ K+G FR  L GKRV+++ R+VI PDP L ++E+ +P   A++
Sbjct: 334  MQTIGSKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVIGPDPNLRIDEVAVPEKVAVK 393

Query: 416  LTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRG 475
            L+YPERVT +N+  +R +IING+++HPGA     K           +RIS+    D    
Sbjct: 394  LSYPERVTDYNLQFMRQAIINGSKLHPGANVLERKHEN-----GSTVRISLNVMKD---- 444

Query: 476  AIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY 534
              ++  K    E + G +V+RH++DGD+VL NRQP+LHK SIM H VRV +  +T R++ 
Sbjct: 445  --LEARKRYARELQIGDIVHRHVRDGDIVLFNRQPSLHKLSIMCHRVRV-RPWRTFRLNE 501

Query: 535  ANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAA 594
              C+ YNADFDGDEMN+H PQ E +R EA  +++     V P NG+P+ + IQD I +A 
Sbjct: 502  CVCNPYNADFDGDEMNLHVPQTEEARTEALELMSVKKNLVTPRNGEPIIAAIQDFITAAY 561

Query: 595  LLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEP 654
            LL+++D F +R +F Q++           S+      ++       E+ P  P IWKP  
Sbjct: 562  LLSRRDRFYDRQQFTQIV-----------SYLDDANLKI-------EMPP--PTIWKPVR 601

Query: 655  LWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNK 714
            LWTGKQ+   ++      RP                                   +K +K
Sbjct: 602  LWTGKQIFNLLM------RP-----------------------------------NKESK 620

Query: 715  MHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--- 771
            +  +   K + +V+  P +E     + S     ++  L+I  ++++ GV DK    D   
Sbjct: 621  VLVNLEAKCRTLVD--PAKEDRFPPDMSP----NDGYLVIQNSEIMCGVFDKNTVGDGKK 674

Query: 772  YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGS 831
              +   +   YG   A   ++ L+++   +L   GF+ G++D++            LH S
Sbjct: 675  NSVFGVILRDYGPEEAAQAMNRLAKIAARWLANIGFSLGINDVI--------PGPILHAS 726

Query: 832  EEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSV 891
                K   +E    E    ID  K K ++E A     +A +     K  S + +      
Sbjct: 727  ----KDARVEKAYDECDVFIDLAK-KGKLENAPGCDQEATLESKISKTLSDVREAVGKIC 781

Query: 892  INELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLP 951
            + EL        +  N   +M T G+KGS +N  Q+ + +GQQ + G RV      ++LP
Sbjct: 782  MQEL--------SRHNAPLIMATCGSKGSVINVAQMVACVGQQIIGGSRVRNGFQDRSLP 833

Query: 952  SFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 1011
             F      P + GF+ + F +GL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K L
Sbjct: 834  HFRKKSKNPPSKGFVRNSFFSGLTPPEFLFHAMSGREGLVDTAVKTAETGYMARRLMKAL 893

Query: 1012 ECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            E L   YD SVR++ G IVQF YG+D +D
Sbjct: 894  EDLCTHYDLSVRNSVGGIVQFQYGDDMLD 922



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 85/143 (59%), Gaps = 8/143 (5%)

Query: 1070 KGSHTFVMGR-NQEMIYKKCS-GQLDASNAYIMELPDALKDNAEKFADKFLSN-----EM 1122
            + ++ FV+ +  ++M+ ++ + G  DA +  + E  +AL ++ +    + L N     E 
Sbjct: 1014 ENTYKFVVDKIVKQMVDQRLARGLPDADDEEMAEEYEALLNSDDPAVQRVLENANKVTEA 1073

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
                FL+  + +++ +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR
Sbjct: 1074 QLSSFLENCRIRYLRAKIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPR 1133

Query: 1183 LQEILTIASKDIKTPVITCPLLV 1205
            ++EI+  A+K I TP+I   L +
Sbjct: 1134 IKEIIN-AAKVISTPIIAAELAI 1155



 Score = 43.5 bits (101), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TCG+    C GH+G+I LV+PV++   F     +L  IC  C
Sbjct: 79  CATCGEDTQKCVGHYGYIKLVLPVFHIGYFRPTINMLSCICKTC 122


>gi|237842187|ref|XP_002370391.1| DNA-directed RNA polymerase III largest subunit, putative [Toxoplasma
            gondii ME49]
 gi|211968055|gb|EEB03251.1| DNA-directed RNA polymerase III largest subunit, putative [Toxoplasma
            gondii ME49]
 gi|221502846|gb|EEE28560.1| DNA-directed RNA polymerase III largest subunit, putative [Toxoplasma
            gondii VEG]
          Length = 1746

 Score =  336 bits (862), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 258/821 (31%), Positives = 379/821 (46%), Gaps = 153/821 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSK-- 299
            L P  VK+++E++  +E E+   +S  +              L  +LVPP   R PS   
Sbjct: 294  LDPLYVKNLLERIRPSECEILDIVSPEK------------LLLSRLLVPPSCIR-PSVTI 340

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
            G     E   T +LS + + N  L  ++V    +    +  W  LQ     L +    A 
Sbjct: 341  GEQGTTEDDLTCVLSDIAELNNVL-QSHVKAGFHTNQFLGIWEFLQLQCTRLINADAPAV 399

Query: 360  QRDMAS--------GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
             + +AS        GICQ L+ KEG FR  L GKRV+++ R+VISPDP   V E+ +P +
Sbjct: 400  SQLLASKNISKPGRGICQRLKGKEGRFRGNLSGKRVDFSGRTVISPDPNANVYEVVVPEW 459

Query: 412  FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLD 471
             A RLT+PERV   N+  LR +++ G    PGA  Y++K+   +       R  +   L 
Sbjct: 460  VAKRLTFPERVNRVNIEVLRAAVLKGCSDWPGAC-YVNKVDGSKCSLRYANRRQVAENLQ 518

Query: 472  TSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLR 531
                              G +V RHL +GDVVL NRQP+LH+ SIMAH  RV+   +T R
Sbjct: 519  I-----------------GDVVERHLCNGDVVLFNRQPSLHRMSIMAHRARVMPW-RTFR 560

Query: 532  MHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIV 591
             +   CS YNADFDGDEMN+H PQ   +RAEA  ++   N  V P NG+PL +  QD + 
Sbjct: 561  FNECVCSPYNADFDGDEMNLHLPQTHEARAEALYLMGVVNNLVTPKNGEPLIAATQDFLS 620

Query: 592  SAALLTKKDTFLNRDEFCQLL--YSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            S+ +LT KD FL RD+FC +   ++ G+S   L                        P I
Sbjct: 621  SSYMLTHKDVFLTRDQFCLICSYFTDGLSRVDLPP----------------------PTI 658

Query: 650  WKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKL 709
             KP  LWTGKQVI+ +L      RP                              ++   
Sbjct: 659  LKPVELWTGKQVISVLL------RP------------------------------NRNSF 682

Query: 710  SKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN-DLVRGVIDKAQ 768
               N   K++      +    PGE                +  +I+++ +LV G I K  
Sbjct: 683  VMVNFQLKEREFSAARI---PPGEAPFM---------CPSDAYVIFRHSELVAGCIGKKV 730

Query: 769  FAD--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKN 826
              D  +GL   +        A   +  +++L   +    G T G+DD+         +K+
Sbjct: 731  LGDAKFGLFFHLIRDNSPAQAAACMGRIAKLSARWFANRGMTIGIDDVTPSPTLLAAKKD 790

Query: 827  HL-HGSEEIGKRVHLE---ALELEDGAEID---PIKLKSEIEKAMRGGGDAAVAYFDMKM 879
             L HG   + + + +    AL+   G  ++    +++KS ++      G A         
Sbjct: 791  ILNHGYNLVAQEIQMYKKGALQPHPGCTLEQTLEVRVKSILDDLRNEAGKAC-------- 842

Query: 880  TSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGK 939
                                +L P  K  I  M  SGAKG+ +N  Q+ + +GQQ + G+
Sbjct: 843  ------------------NRVLHPLNKPLI--MFNSGAKGALINIAQMIACVGQQNVSGQ 882

Query: 940  RVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSR 999
            R+      +TLP F       ++ GF+   F +GL+P E++FH M+GREGLVDTAVKT+ 
Sbjct: 883  RIQNGFVSRTLPHFPLNCRDAKSRGFVASSFYSGLQPDEFFFHTMSGREGLVDTAVKTAE 942

Query: 1000 SGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            +GY+QR L+K LE L I YD SVR +DG IVQF YG+DG++
Sbjct: 943  TGYMQRRLMKALEDLSIRYDNSVRTSDGQIVQFVYGDDGLN 983



 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 58/79 (73%), Gaps = 1/79 (1%)

Query: 1126 DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1185
            +FL+    K+V ++++ GE VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR++E
Sbjct: 1362 EFLRCSWRKYVKAISEAGEAVGAMGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKE 1421

Query: 1186 ILTIASKDIKTPVITCPLL 1204
            I+  A K I+TP+I  PL+
Sbjct: 1422 IINAAQK-IQTPIIVVPLV 1439



 Score = 45.1 bits (105), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG     C GH+G++DL  PVY+   F  +  +L  IC  C        + EK + +
Sbjct: 165 CQTCGHTLLQCTGHWGYMDLQAPVYHVGYFKYVLQILYCICKTCAALLQPPEQKEKLLLR 224

Query: 61  L 61
           +
Sbjct: 225 I 225


>gi|46670|emb|CAA32925.1| RNA polymerase subunit A (AA 1-880) [Sulfolobus acidocaldarius]
          Length = 880

 Score =  336 bits (862), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 267/827 (32%), Positives = 405/827 (48%), Gaps = 147/827 (17%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P  F ++++     L PS+++D +E++ +++ EL          G+  K+    + +  V
Sbjct: 161  PYNFNEERNGSIVKLSPSEIRDRLERIPDSDVELL---------GYDPKSSRPEWMILTV 211

Query: 288  L-VPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNL 344
            L VPPI  R PS   +S +  E   T  L  +++ N  L  + +       +I   W  L
Sbjct: 212  LPVPPITIR-PSITIESGIRAEDDLTHKLVDIIRLNERLKES-IEAGAPQLIIEDLWDLL 269

Query: 345  QQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
            Q  V   FD    G   A  R       + Q L+ KEG FR  L GKRV+++ R+VISPD
Sbjct: 270  QYHVATYFDNEIPGLPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPD 329

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP 458
            P L+++E+GIP   A  LT PERVT  N+ ++R  IING +  PGA + +         P
Sbjct: 330  PNLSIDEVGIPYTIARMLTVPERVTNINIERIRQYIINGPDKWPGANYVIK--------P 381

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEF-EGKMVYRHLQDGDVVLVNRQPTLHKPSIM 517
            +       GR++D      V+  K+  +    G +V RHL DGDVVL NRQP+LH+ S+M
Sbjct: 382  D-------GRRIDLR---YVKDRKELASSITAGYVVERHLVDGDVVLFNRQPSLHRISMM 431

Query: 518  AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
            AH VRVL G +T R++  +C  YNADFDGDEMN+H PQ E + AEA  ++  +   + P 
Sbjct: 432  AHKVRVLPG-RTFRLNLLDCPPYNADFDGDEMNLHVPQSEEAIAEARELMLVHKNIITPR 490

Query: 578  NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISR 637
             G P+    QD+I  A LL+ K T L  +E   +L        G+  F G+ G+      
Sbjct: 491  YGGPIIGGGQDYISGAYLLSVKTTLLTVEEVATIL--------GVTDFVGELGE------ 536

Query: 638  SEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADK 697
                     PAI  P+P +TGKQVI+                    LP+DF    F+   
Sbjct: 537  ---------PAILAPKPYYTGKQVISLF------------------LPKDF---NFHG-- 564

Query: 698  QSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN 757
                       +SK  +  KD+                              +  ++ KN
Sbjct: 565  --------PANISKGPRACKDEI--------------------------CPHDSFIVIKN 590

Query: 758  D-LVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDD 813
              L+ GV DK    +     ++H     YG+     L+  + ++F  FL+M GFT  ++D
Sbjct: 591  GLLLEGVFDKKAIGNQQPESMLHWSIREYGTEYGKWLMDNVFKMFIRFLEMRGFTMTLED 650

Query: 814  LLILKDKERERKNHL-HGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
            + I  + + E    +  G  ++ + +     +  +G +++PI  ++ IE+++        
Sbjct: 651  ITIPDEAQNEITTKIKEGYSQVDEYIR----KFNEG-QLEPIPGRT-IEESLES------ 698

Query: 873  AYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
              + +    +L K     V  E+ ++  L P   N + +M  +GA+GS++N  Q+++ LG
Sbjct: 699  --YILDTLDKLRK-----VAGEIATK-YLDPF--NNVYIMAITGARGSELNITQMTALLG 748

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ + G+R+ R    +TL  F   D AP A GF+ + F+ GL P E +FH   GREGLVD
Sbjct: 749  QQSVRGERIRRGYRERTLSLFKYGDIAPEARGFVKNSFMRGLSPYEMFFHAAGGREGLVD 808

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            TAVKTS+SGY+QR LI  L  L+I YD +VR   G IVQ  YG+D V
Sbjct: 809  TAVKTSQSGYMQRRLINALSDLRIEYDGTVRSLYGDIVQVVYGDDAV 855



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 31/59 (52%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVR 59
           C  CG     CPGHFGHI+L+ PV +      +Y  L+  C+ C   K   +++E+  R
Sbjct: 58  CPVCGNTLAGCPGHFGHIELIKPVIHIGYVKHIYDFLRSTCWRCGRIKIKEQDLERYKR 116


>gi|312273883|gb|ADQ57311.1| RNA polymerase II largest subunit, partial [Nosema sp. CO 05-11]
          Length = 974

 Score =  336 bits (862), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 241/778 (30%), Positives = 381/778 (48%), Gaps = 129/778 (16%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
              L ++LVPP   R PS   + ++  E   T  LS ++++N YL   Y  +     +I  
Sbjct: 115  LILTILLVPPPSVR-PSIVMEGMLRAEDDLTHKLSDIIKSNTYLKK-YEMEGAPGHIIRD 172

Query: 340  RWMNLQQSVNVLFDGKNAAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYAC 391
                LQ  V  L D  + +GQ        R + S I   L+ KEG  R  LMGKRV+++ 
Sbjct: 173  YEQLLQFHVATLID-NDISGQPQALQKSGRPLKS-ISARLKGKEGRVRGNLMGKRVDFSA 230

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            RSVI+ D  +++ E+G+P   A   T+PE++TP+N+ KL   + NG   +PGA +Y+ + 
Sbjct: 231  RSVITADANISLEEVGVPLEVAKIHTFPEKITPFNIEKLEKLVANGPNEYPGA-NYVIRT 289

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
               R+             L+ +RG I           EG +V RH+Q+GD +L NRQP+L
Sbjct: 290  DGQRI------------DLNFNRGDIKLE--------EGYIVERHMQNGDTILFNRQPSL 329

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK S+M H VRV+ G KT R++ +  S YNADFDGDEMN+H PQ+  S +E   I     
Sbjct: 330  HKMSMMGHKVRVMAG-KTFRLNLSVTSPYNADFDGDEMNLHMPQNYNSISELEEICMVPK 388

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSS---GLGSFTGK 628
            Q + P +  P+  ++QD +      T +D F +++E  Q+LYS         GL S   K
Sbjct: 389  QILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNEMMQVLYSIDFEKYYDIGLDSVI-K 447

Query: 629  PGQRVLISRSEQEVLPLL--PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQ 686
              +++ +   E  ++ LL  PAI KP+ LWTGKQ+++ +                   P 
Sbjct: 448  KCKKLDMGAKEYSLMGLLSKPAIQKPKQLWTGKQILSFI------------------FPN 489

Query: 687  DFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKE 746
             F+K   N  +++D +                                            
Sbjct: 490  VFYKNSSNESRENDLEN------------------------------------------- 506

Query: 747  LSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFL-Q 803
            +S+  ++I   +++ G+IDK        GLVH +   +G +     +  + ++ T FL  
Sbjct: 507  VSDTSVVICGGEIMSGIIDKKAVGATQGGLVHIIANDFGYSRVTLFIDDIQKIITKFLMN 566

Query: 804  MHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
            +H F+ G+ D +   D  +  K  +  S++                 +D I  K++  + 
Sbjct: 567  IHVFSMGIGDTVADSDTLKYVKQAIEKSKD----------------SVDEIIRKAQNNRL 610

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK-NWISLMTTSGAKGSKV 922
             R  G      F+ ++   LNK    S           K   K N +  M  SG+KGS +
Sbjct: 611  DRLPGMTMKESFESQVNYVLNKARDVS------GTSTQKSLNKCNNMKAMVLSGSKGSFI 664

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  Q+++ +GQQ +EGKR+P   + +TLP F   D++ ++ GF+ + +L+GL P+E++FH
Sbjct: 665  NISQVTACVGQQNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFH 724

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             M GREGL+DTA+KT+ +GY+QR L+K +E   +  D SVR A G++ Q+ YGEDG D
Sbjct: 725  AMGGREGLIDTAIKTAETGYIQRRLVKAMEDATVRLDGSVRGATGNVYQYLYGEDGFD 782


>gi|70606495|ref|YP_255365.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius DSM
            639]
 gi|449066707|ref|YP_007433789.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius N8]
 gi|449068981|ref|YP_007436062.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
            Ron12/I]
 gi|73920763|sp|P11512.2|RPOA1_SULAC RecName: Full=DNA-directed RNA polymerase subunit A'
 gi|68567143|gb|AAY80072.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius DSM
            639]
 gi|449035215|gb|AGE70641.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius N8]
 gi|449037489|gb|AGE72914.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
            Ron12/I]
          Length = 880

 Score =  336 bits (862), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 267/827 (32%), Positives = 405/827 (48%), Gaps = 147/827 (17%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P  F ++++     L PS+++D +E++ +++ EL          G+  K+    + +  V
Sbjct: 161  PYNFNEERNGSIVKLSPSEIRDRLERIPDSDVELL---------GYDPKSSRPEWMILTV 211

Query: 288  L-VPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNL 344
            L VPPI  R PS   +S +  E   T  L  +++ N  L  + +       +I   W  L
Sbjct: 212  LPVPPITIR-PSITIESGIRAEDDLTHKLVDIIRLNERLKES-IEAGAPQLIIEDLWDLL 269

Query: 345  QQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
            Q  V   FD    G   A  R       + Q L+ KEG FR  L GKRV+++ R+VISPD
Sbjct: 270  QYHVATYFDNEIPGLPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPD 329

Query: 399  PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP 458
            P L+++E+GIP   A  LT PERVT  N+ ++R  IING +  PGA + +         P
Sbjct: 330  PNLSIDEVGIPYTIARMLTVPERVTNINIERIRQYIINGPDKWPGANYVIK--------P 381

Query: 459  NKKMRISIGRKLDTSRGAIVQPGKDSDNEF-EGKMVYRHLQDGDVVLVNRQPTLHKPSIM 517
            +       GR++D      V+  K+  +    G +V RHL DGDVVL NRQP+LH+ S+M
Sbjct: 382  D-------GRRIDLR---YVKDRKELASSITAGYVVERHLVDGDVVLFNRQPSLHRISMM 431

Query: 518  AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
            AH VRVL G +T R++  +C  YNADFDGDEMN+H PQ E + AEA  ++  +   + P 
Sbjct: 432  AHKVRVLPG-RTFRLNLLDCPPYNADFDGDEMNLHVPQSEEAIAEARELMLVHKNIITPR 490

Query: 578  NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISR 637
             G P+    QD+I  A LL+ K T L  +E   +L        G+  F G+ G+      
Sbjct: 491  YGGPIIGGGQDYISGAYLLSVKTTLLTVEEVATIL--------GVTDFVGELGE------ 536

Query: 638  SEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADK 697
                     PAI  P+P +TGKQVI+                    LP+DF    F+   
Sbjct: 537  ---------PAILAPKPYYTGKQVISLF------------------LPKDF---NFHG-- 564

Query: 698  QSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN 757
                       +SK  +  KD+                              +  ++ KN
Sbjct: 565  --------PANISKGPRACKDEI--------------------------CPHDSFIVIKN 590

Query: 758  D-LVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDD 813
              L+ GV DK    +     ++H     YG+     L+  + ++F  FL+M GFT  ++D
Sbjct: 591  GLLLEGVFDKKAIGNQQPESMLHWSIREYGTEYGKWLMDNVFKMFIRFLEMRGFTMTLED 650

Query: 814  LLILKDKERERKNHL-HGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
            + I  + + E    +  G  ++ + +     +  +G +++PI  ++ IE+++        
Sbjct: 651  ITIPDEAQNEITTKIKEGYSQVDEYIR----KFNEG-QLEPIPGRT-IEESLES------ 698

Query: 873  AYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
              + +    +L K     V  E+ ++  L P   N + +M  +GA+GS++N  Q+++ LG
Sbjct: 699  --YILDTLDKLRK-----VAGEIATK-YLDPF--NNVYIMAITGARGSELNITQMTALLG 748

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ + G+R+ R    +TL  F   D AP A GF+ + F+ GL P E +FH   GREGLVD
Sbjct: 749  QQSVRGERIRRGYRERTLSLFKYGDIAPEARGFVKNSFMRGLSPYEMFFHAAGGREGLVD 808

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            TAVKTS+SGY+QR LI  L  L+I YD +VR   G IVQ  YG+D V
Sbjct: 809  TAVKTSQSGYMQRRLINALSDLRIEYDGTVRSLYGDIVQVVYGDDAV 855



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 31/59 (52%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVR 59
           C  CG     CPGHFGHI+L+ PV +      +Y  L+  C+ C   K   +++E+  R
Sbjct: 58  CPVCGNTLAGCPGHFGHIELIKPVIHIGYVKHIYDFLRSTCWRCGRIKIKEQDLERYKR 116


>gi|170291135|ref|YP_001737951.1| DNA-directed RNA polymerase subunit A [Candidatus Korarchaeum
            cryptofilum OPF8]
 gi|170175215|gb|ACB08268.1| DNA-directed RNA polymerase subunit A [Candidatus Korarchaeum
            cryptofilum OPF8]
          Length = 1324

 Score =  336 bits (862), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 285/994 (28%), Positives = 457/994 (45%), Gaps = 196/994 (19%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--- 298
            L P++++DI+EK+ +++  L  F          KKA      L V+LVPP+  R PS   
Sbjct: 192  LWPNEIRDILEKISDDDSLLIGFDP--------KKARPEWAVLTVLLVPPLTAR-PSIYL 242

Query: 299  KGGDSVMEHPQTVLLSKVLQANIYLANAY-VNQPDNAKVIVARWMNLQQSVNVLFDGKNA 357
            + G+   E   T +L ++L+AN  L N+  V  P    ++ + W +LQ  V+V F+   A
Sbjct: 243  ETGER-SEDDLTHILVEILKANRKLNNSKKVGAP--VSMVESEWDHLQYWVSVFFNNATA 299

Query: 358  A-------GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPP 410
                    G R     + Q L  KEG  R+ L+GKRVN++ R+VISPDP + ++E+G+P 
Sbjct: 300  GMPVAMQKGTRRPLKSLFQRLSGKEGRLRKNLIGKRVNFSARTVISPDPMIDIDEVGVPV 359

Query: 411  YFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKL 470
              A+ LT PE V   N+ K+++ ++ G + +PGA                   I  G   
Sbjct: 360  EIAMVLTVPEYVNENNIEKMKELVMRGPDEYPGANA-----------------IRKGGVT 402

Query: 471  DTSRGAIVQPGKDSDNEFE-----GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLK 525
              S   + + GKD+  E       G +V RHL DGD V+ NRQP+LHK S++ H V+VL 
Sbjct: 403  PISLKILQRKGKDALREAAEQLEPGDIVERHLMDGDYVIFNRQPSLHKLSMLGHRVKVLP 462

Query: 526  GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSL 585
            G  T R+H A C  YNADFDGDEMN+H PQ      E   ++      + P  G  +   
Sbjct: 463  G-ATFRLHPAVCVPYNADFDGDEMNLHVPQILDGSVEVRELMGVKYNMLSPRTGGSIIGA 521

Query: 586  IQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL 645
             QD I +  ++TKKD   +++E  ++L  +G++                        LP 
Sbjct: 522  RQDFITALYMITKKDALFDKNEATRILSRAGITQ-----------------------LPE 558

Query: 646  LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKND 705
             PAI +P+ LWTGKQ+I+ +                  LP+D     F    +S  K ++
Sbjct: 559  -PAIKRPKRLWTGKQLISML------------------LPKDL---NFEGIAKSAVKASE 596

Query: 706  KGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVID 765
                       KD S                          L +  +LI +  L+ GV+D
Sbjct: 597  ----------CKDPSC-------------------------LGDGYVLIREGKLLSGVLD 621

Query: 766  KAQFADY-----GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDK 820
                         L+  +   YG + A   L+ L ++ +  + ++G T    +L+I ++ 
Sbjct: 622  DNIVGTLVKGRLTLIDVLIRDYGEDVAIEFLNKLLKIASKEVLLYGITNSPKELMIPEEA 681

Query: 821  ERERKN-HLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKM 879
            +RE +  + +  EE+ + +    +      +I   + K E+ + MR   +  +  FD+  
Sbjct: 682  KREIEEIYSNMKEEVTRLIRSRPIT----RKITIYRTKEELLRIMR---EEQMLEFDIVQ 734

Query: 880  TSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGK 939
            T        SSVI++ +         K+ +S+M  +GA+GS  N  QI   +GQQ+++ +
Sbjct: 735  TMDSFWGKVSSVISKYIDP-------KSNVSIMAKTGARGSMANLAQIVGQVGQQKVKTR 787

Query: 940  RVPRMVSGK--------TLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLV 991
                + SG+         L  F   D +P A GF+ + +++GL P E+ FH M+ RE L+
Sbjct: 788  IGFVLTSGRPRKGYKDRVLSYFQRGDLSPEARGFVKNSYVSGLNPAEFIFHAMSSRESLI 847

Query: 992  DTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD---------VH 1042
            D   +T  SGY  R +  +L+ + +SYD +VRD+ G I+QF +G DG D         V+
Sbjct: 848  DKGRRTEDSGYFYRRVANSLKDVYVSYDETVRDSMGHIIQFKFGGDGYDPTKLFRNEPVN 907

Query: 1043 QTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMEL 1102
                I K+      ER RG  ++K               E + K+ +            L
Sbjct: 908  LERIIRKY---VKEERKRGVSKDKI--------------EELLKEAN------------L 938

Query: 1103 PDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMT 1162
            P +L D       K    E   ++ +  +K  F  +  +   P+GL+++QS+ EP+TQM 
Sbjct: 939  PLSLADAIHGARPK----ESELKEIIAELKEGFERAKVEVLTPIGLISAQSIAEPTTQMV 994

Query: 1163 LNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKT 1196
            L TFH  G   M+VT G+ R +E++  AS    T
Sbjct: 995  LRTFHAPGLLAMDVTHGVERFKELVFYASTSTPT 1028


>gi|83320444|gb|ABC02849.1| RNA polymerase II largest subunit, partial [Coemansia reversa]
          Length = 1013

 Score =  336 bits (862), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 313/1039 (30%), Positives = 467/1039 (44%), Gaps = 183/1039 (17%)

Query: 134  KIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLI-RGCNLGETFSGGEEEKDLG 192
            K+    C NC       S+P F    +  +P A  RA  +   C    T     E+ D+ 
Sbjct: 19   KVLECVCWNCGRLKADYSRPDFQ--RLLSIPDASQRAKYVWEYCKKETTCEKPPEDADMA 76

Query: 193  ASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ------KDLFSGPLLPSD 246
                V  P   S +G   G   T   RH  G GA    F+K       K+  +    P++
Sbjct: 77   GPDGV--PNDVSMDGGIHGELGT---RH--GCGARQPNFRKTGLKLYVKNKPAAGEEPTN 129

Query: 247  VKDIIEKLWENEFELCSFISDMQQQGFGKK---AGHSIFFLGVVLVPPIKFRLPSKGGDS 303
             +D  E   E   +    I+D   +  G     A      L V+ VPP+  R PS   D+
Sbjct: 130  DRD--EVSVERVLQTLRKITDRDAETLGIDPYFARPEWMVLHVMPVPPMTVR-PSIQMDA 186

Query: 304  VM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG-- 359
            +   E   T  LS +L+AN  L    V        ++  ++ L Q     F    A+G  
Sbjct: 187  MRPSEDDLTYKLSDILKANERLQRCIVEGA--PAHVINEFVTLLQFHTAAFMNNEASGMP 244

Query: 360  QRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFAL 414
            Q    SG     I   L+ KEG  R  LMGKRV+++ R+VI+ DP ++++++G+P   A 
Sbjct: 245  QALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNISIDQVGVPRSIAR 304

Query: 415  RLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL-DKLSTMRLPPNKKMRISIGRKLDTS 473
             LTYPE VTP+N+ +L++ + NG + +PGA   + D    + L  NK+            
Sbjct: 305  NLTYPETVTPYNIDRLQEYVRNGRDAYPGAKFVVRDNGEQINLQYNKQ------------ 352

Query: 474  RGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 532
            RG         D   + G  V R+L D DV++ NRQP+LHK S+M H V+V+    T R+
Sbjct: 353  RG---------DFPLQIGYRVERNLIDDDVIIFNRQPSLHKMSMMGHRVKVMP-YSTFRL 402

Query: 533  HYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVS 592
            + +  S YNADFDGDEMN+H PQ E SRAE   I     Q++ P +  P+  ++QD + +
Sbjct: 403  NLSVTSPYNADFDGDEMNLHVPQSEESRAEIKEICMVPKQFISPQSNKPVMGIVQDTLCA 462

Query: 593  AALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKP 652
                T++D FL+ D    L+         L  + G               LP  P I KP
Sbjct: 463  IRKFTRRDNFLDTDMIMLLMM-------WLPDWDG--------------TLP-TPCILKP 500

Query: 653  EPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKT 712
            +PLWTGKQ+ + V   I +G                                       T
Sbjct: 501  KPLWTGKQIYSMV---IPKG---------------------------------------T 518

Query: 713  NKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--A 770
            N   + +     E     PG+ K                + I   +LV G++ K     +
Sbjct: 519  NCYRESEGHPDGETTWISPGDTK----------------VYIRDGELVCGMVCKKTVGTS 562

Query: 771  DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHG 830
            + GLVHT+   +GS +A        R+   +   +GF+ G+ D +         +N    
Sbjct: 563  EGGLVHTIFNEFGSESARRFFDGTQRVINNWFIHNGFSVGIGDAVT---DNATMENVGTI 619

Query: 831  SEEIGKRVHLEALELE-DGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSS 889
            + E   RV     E + D  E  P              G      F++++ + LN +   
Sbjct: 620  TNECYARVDRYIEEAQNDALECMP--------------GMTIKESFEVRVNTALN-NARD 664

Query: 890  SVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKT 949
                ++L    LK T  N I+ M+ +G+KGSK+N  QIS+ +GQQ +EGKR+P     +T
Sbjct: 665  DAGKQVLDR--LKDT--NNIAQMSLAGSKGSKINISQISACVGQQNVEGKRIPFGFKYRT 720

Query: 950  LPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK 1009
            LP F   D++P + GF+ + +L GL PQE+YFH M GREGL+DTAVKT+ +GY+QR LIK
Sbjct: 721  LPHFGKDDYSPESRGFVRNSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRRLIK 780

Query: 1010 NLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCD 1069
             LE +   YD S+R++ G IVQF YGEDG+D     FI K   L+ R        +K  D
Sbjct: 781  ALEDIMCQYDGSIRNSQGHIVQFVYGEDGMD---GCFIEKQKILSLRP------SHKVFD 831

Query: 1070 KGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLK 1129
            +     VM  +   I++   G LD S    +E  +A++        + L +E AK    +
Sbjct: 832  RTYKVNVM--DHGSIFR--PGSLDFSILKNIEGNEAVQ--------RVLDDEFAKLADDR 879

Query: 1130 LVKHKFVLSLAQPGEPVGL 1148
             +  +F+L      +P+ L
Sbjct: 880  RMMREFILKSGTDKQPLPL 898


>gi|334187204|ref|NP_195305.2| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
 gi|322510106|sp|P18616.3|RPB1_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
            polymerase II subunit B1; AltName: Full=DNA-directed RNA
            polymerase III largest subunit
 gi|332661173|gb|AEE86573.1| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
          Length = 1839

 Score =  336 bits (861), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 240/709 (33%), Positives = 345/709 (48%), Gaps = 132/709 (18%)

Query: 344  LQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
            LQ  +   FD    G+  A Q+       IC  L+ KEG  R  LMGKRV+++ R+VI+P
Sbjct: 307  LQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 366

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DP + ++E+G+P   AL LTYPE VTP+N+ +L++ +  G   HP              P
Sbjct: 367  DPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGP--HP--------------P 410

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSI 516
            P K     I R  D  R  +    K SD   E G  V RHLQDGD VL NRQP+LHK SI
Sbjct: 411  PGKTGAKYIIRD-DGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSI 469

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            M H +R++    T R++ +  S YNADFDGDEMN+H PQ   +RAE   ++      V P
Sbjct: 470  MGHRIRIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 528

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
                P+  ++QD ++    +TK+DTF+ +D F   L            F GK        
Sbjct: 529  QANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLM-------WWEDFDGK-------- 573

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
                  +P  PAI KP PLWTGKQ    V N I              +P+     R++A 
Sbjct: 574  ------VPA-PAILKPRPLWTGKQ----VFNLI--------------IPKQINLLRYSA- 607

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
                               H D      E     PG+ +                + I +
Sbjct: 608  ------------------WHADT-----ETGFITPGDTQ----------------VRIER 628

Query: 757  NDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             +L+ G + K     ++  LVH + E  G + A   L     L   +L  +GFT G+ D 
Sbjct: 629  GELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTIGIGDT 688

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
             I      E+ N    + +   +  +   +   G E+DP     E  + MR         
Sbjct: 689  -IADSSTMEKINETISNAKTAVKDLIRQFQ---GKELDP-----EPGRTMRDT------- 732

Query: 875  FDMKMTSQLNK--HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
            F+ ++   LNK    + S   + L+E        N +  M T+G+KGS +N  Q+++ +G
Sbjct: 733  FENRVNQVLNKARDDAGSSAQKSLAE-------TNNLKAMVTAGSKGSFINISQMTACVG 785

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ +EGKR+P    G+TLP F   D+ P + GF+ + +L GL PQE++FH M GREGL+D
Sbjct: 786  QQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 845

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV 1041
            TAVKTS +GY+QR L+K +E + + YD +VR++ G ++QF YGEDG+D 
Sbjct: 846  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 894



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 56/73 (76%), Gaps = 1/73 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F+ SL  PGE +G +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ +A
Sbjct: 1069 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1128

Query: 1191 SKDIKTPVITCPL 1203
             K IKTP ++  L
Sbjct: 1129 -KRIKTPSLSVYL 1140



 Score = 48.1 bits (113), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C+TC      CPGHFG+++L  P+Y+      + ++++ +CF C    A   E
Sbjct: 66  CETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEE 118


>gi|4883421|emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
            [Arabidopsis thaliana]
 gi|7270532|emb|CAB81489.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
            [Arabidopsis thaliana]
          Length = 1840

 Score =  335 bits (860), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 240/709 (33%), Positives = 345/709 (48%), Gaps = 132/709 (18%)

Query: 344  LQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
            LQ  +   FD    G+  A Q+       IC  L+ KEG  R  LMGKRV+++ R+VI+P
Sbjct: 308  LQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 367

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DP + ++E+G+P   AL LTYPE VTP+N+ +L++ +  G   HP              P
Sbjct: 368  DPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGP--HP--------------P 411

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSI 516
            P K     I R  D  R  +    K SD   E G  V RHLQDGD VL NRQP+LHK SI
Sbjct: 412  PGKTGAKYIIRD-DGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSI 470

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            M H +R++    T R++ +  S YNADFDGDEMN+H PQ   +RAE   ++      V P
Sbjct: 471  MGHRIRIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 529

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
                P+  ++QD ++    +TK+DTF+ +D F   L            F GK        
Sbjct: 530  QANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLM-------WWEDFDGK-------- 574

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
                  +P  PAI KP PLWTGKQ    V N I              +P+     R++A 
Sbjct: 575  ------VPA-PAILKPRPLWTGKQ----VFNLI--------------IPKQINLLRYSA- 608

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
                               H D      E     PG+ +                + I +
Sbjct: 609  ------------------WHADT-----ETGFITPGDTQ----------------VRIER 629

Query: 757  NDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             +L+ G + K     ++  LVH + E  G + A   L     L   +L  +GFT G+ D 
Sbjct: 630  GELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTIGIGDT 689

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
             I      E+ N    + +   +  +   +   G E+DP     E  + MR         
Sbjct: 690  -IADSSTMEKINETISNAKTAVKDLIRQFQ---GKELDP-----EPGRTMRDT------- 733

Query: 875  FDMKMTSQLNK--HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
            F+ ++   LNK    + S   + L+E        N +  M T+G+KGS +N  Q+++ +G
Sbjct: 734  FENRVNQVLNKARDDAGSSAQKSLAE-------TNNLKAMVTAGSKGSFINISQMTACVG 786

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ +EGKR+P    G+TLP F   D+ P + GF+ + +L GL PQE++FH M GREGL+D
Sbjct: 787  QQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 846

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV 1041
            TAVKTS +GY+QR L+K +E + + YD +VR++ G ++QF YGEDG+D 
Sbjct: 847  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 895



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 56/73 (76%), Gaps = 1/73 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F+ SL  PGE +G +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ +A
Sbjct: 1070 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1129

Query: 1191 SKDIKTPVITCPL 1203
             K IKTP ++  L
Sbjct: 1130 -KRIKTPSLSVYL 1141



 Score = 46.6 bits (109), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKA 49
           C+TC      CPGHFG+++L  P+Y+      + ++++ +CF C    A
Sbjct: 66  CETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILA 114


>gi|402584966|gb|EJW78907.1| hypothetical protein WUBG_10184 [Wuchereria bancrofti]
          Length = 610

 Score =  335 bits (860), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 220/616 (35%), Positives = 317/616 (51%), Gaps = 99/616 (16%)

Query: 245 SDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSV 304
           ++V++    LW+N+  L   +  +      +     I F   VLVPP K+R         
Sbjct: 46  AEVREHFRILWQNDGPLLKKVFPVFDSENDRHCPLDILFCEAVLVPPTKYRPVRIFKGDK 105

Query: 305 MEHPQTVLLSKVLQAN-----IYLA------NAYVN--------QPDNAKVIVARWMNLQ 345
            E+PQ+V L K+L+A+     I LA       A +N        Q   AK+  A ++ LQ
Sbjct: 106 FENPQSVNLRKLLEASETIRAIRLALSGNSEKAVLNLVSENVLGQTMQAKMHNA-YLALQ 164

Query: 346 QSVNVLFDGK--NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
           Q +  +FD         R    GI Q+LEKK+GLFR  +MGKRVN+ACRSVI+PDPYL +
Sbjct: 165 QRMGAIFDQDLDKWTDVRIQVPGIKQILEKKQGLFRMNMMGKRVNFACRSVITPDPYLDI 224

Query: 404 NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMR 463
           +EIGIP  FA +LT  E V   N+V+LR  I NG   HPGA +++ K      P      
Sbjct: 225 DEIGIPELFAKKLTVTESVNALNLVRLRKMIKNGPNFHPGA-NFIQK------PGRYTQV 277

Query: 464 ISIGRKLDTSRGAI-VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
           +S+ ++ +    A  +QPG  S   +  + V RHL  GD+VL+NRQP+LHKPS+M H  R
Sbjct: 278 LSVNKRNERDAAAKRLQPGSSSHLGYPIQ-VLRHLDKGDLVLMNRQPSLHKPSMMGHRAR 336

Query: 523 VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
           VLK ++ LRM+YA C  YNADFDGDEMN HF Q+ +++ E   I N  + ++ P +G PL
Sbjct: 337 VLKSQRALRMNYAPCKAYNADFDGDEMNGHFVQNRIAQTELAEIANVGSNFLVPKDGTPL 396

Query: 583 RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
             LIQDH+VS  LLT +  F N+++F  L+ S+   ++          QR++I       
Sbjct: 397 LGLIQDHVVSGVLLTIRGRFFNKEDFMHLVLSAFAETT----------QRLVIPP----- 441

Query: 643 LPLLPAIWKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDR 701
               PA+ KPE LW+GKQ+I+ VL N I   +P   +    K P   +K           
Sbjct: 442 ----PAMLKPEILWSGKQIISTVLRNCIPLHKPLLNIRSKAKTPLSCWKV---------- 487

Query: 702 KKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVR 761
                                               E + + +  +SE +++  + +L+ 
Sbjct: 488 ------------------------------------EDHPAPKFNMSESEVVFRQAELLV 511

Query: 762 GVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKD 819
           GV+DK  +    YGL+H   +LYG   A  +LS  SRLFT  LQ HGFT GV D+LI K+
Sbjct: 512 GVLDKQHYGSTQYGLIHCCWDLYGHQFATRILSCFSRLFTTHLQYHGFTLGVADILIRKE 571

Query: 820 KERERKNHLHGSEEIG 835
            +++RK  +    + G
Sbjct: 572 ADKQRKKEIKALRKCG 587


>gi|356496595|ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
            max]
          Length = 1827

 Score =  335 bits (860), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 231/708 (32%), Positives = 347/708 (49%), Gaps = 132/708 (18%)

Query: 344  LQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
            LQ  +   FD    G   A QR       IC  L+ KEG  R  LMGKRV+++ R+VI+P
Sbjct: 306  LQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 365

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DP + ++++G+P   AL LTYPE VTP+N+ +L++ +  G   HP              P
Sbjct: 366  DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGP--HP--------------P 409

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSI 516
            P K     I R  D  R  +    K SD+  E G  V RHL DGD VL NRQP+LHK SI
Sbjct: 410  PGKTGAKYIIRD-DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSI 468

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            M H ++++    T R++ +  S YNADFDGDEMN+H PQ   +RAE   ++      V P
Sbjct: 469  MGHRIKIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 527

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
             +  P+  ++QD ++    +TK+DTF+++D F  +L            F GK        
Sbjct: 528  QSNRPVMGIVQDTLLGCRKITKRDTFISKDVFMNILM-------WWEDFDGK-------- 572

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
                  +P  PAI KPEPLWTGKQV   +                  +P+     R++  
Sbjct: 573  ------VP-APAILKPEPLWTGKQVFNLI------------------IPKQINLIRYS-- 605

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
              S   ++++G ++  + M +                                    I K
Sbjct: 606  --SWHSESERGSITPGDTMVR------------------------------------IEK 627

Query: 757  NDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             +L+ G + K     Y  GL+H + E  G + A   L     L   +L  + F+ G+ D 
Sbjct: 628  GELLTGTLCKKTLGTYSGGLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDT 687

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
            +            +  ++E  K++  EA E          KL++E  ++M          
Sbjct: 688  IADASTMETINQTISAAKEKVKQLIREAHEK---------KLEAEPGRSMMDS------- 731

Query: 875  FDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
            F+ ++   LN  +  + +   + LSE        N +  M T+G+KGS +N  Q+++ +G
Sbjct: 732  FENRVNQTLNRARDDAGNSAQKSLSES-------NNLKAMVTAGSKGSFINISQMTACVG 784

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ +EGKR+P     +TLP F   D  P + GF+ + +L GL PQE++FH M GREGL+D
Sbjct: 785  QQNVEGKRIPYGFIDRTLPHFTKDDLGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 844

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            TAVKTS +GY+QR L+K +E + + YD +VR++ G ++QF YGEDG+D
Sbjct: 845  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 892



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 59/80 (73%), Gaps = 3/80 (3%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F+ SL   GE +G +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ +A
Sbjct: 1068 IESRFLQSLVASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1127

Query: 1191 SKDIKTPVITCPLL--VGKT 1208
             K IKTP ++  L   VGKT
Sbjct: 1128 -KRIKTPSLSVYLRPDVGKT 1146



 Score = 49.3 bits (116), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 9/61 (14%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC---------HHFKASR 51
           C+TC      CPGHFGH++L  P+++      + T+++ +CF C         H FK + 
Sbjct: 66  CETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHKFKQAL 125

Query: 52  R 52
           R
Sbjct: 126 R 126


>gi|379005505|ref|YP_005261177.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum oguniense TE7]
 gi|375160958|gb|AFA40570.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum oguniense TE7]
          Length = 884

 Score =  335 bits (860), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 250/727 (34%), Positives = 354/727 (48%), Gaps = 157/727 (21%)

Query: 341  WMNLQQSVNVLFDGK-------NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRS 393
            W  LQ  V   FD +          G R +  GI Q L+ KEG FR  L GKRVN++ R+
Sbjct: 276  WDLLQYHVATYFDNELPGIPVAKHRGGRPL-KGIAQRLKGKEGRFRGSLSGKRVNFSART 334

Query: 394  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLST 453
            VISPDP++++NE+G+P   A  LT PE+VT WN+  LR+ +I G E  PGA + +     
Sbjct: 335  VISPDPHISINEVGVPTDIAKILTVPEKVTAWNIDVLREYVIRGPETWPGANYVVT---- 390

Query: 454  MRLPPNKK--MRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
               P  ++  +R    RK    R A             G +V RHL+DGD+VL NRQP+L
Sbjct: 391  ---PEGRRIDLRYVKDRKALAERLA------------PGWVVERHLRDGDIVLFNRQPSL 435

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            H+ S+M H+V+VL G +T R+H A C  YNADFDGDEMN+H PQ E +RAEA  ++   N
Sbjct: 436  HRVSMMGHLVKVLPG-RTFRLHLAVCPPYNADFDGDEMNLHVPQTEEARAEARLLMLVEN 494

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              + P  G  +    QD+I+ A LL+ K TFL + E   LL        G G        
Sbjct: 495  HIITPRYGGAIIGARQDYIIGAYLLSHKTTFLTKKEVAFLL--------GAG-------- 538

Query: 632  RVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKT 691
                 +SE++  P  PAI  P  LWTGKQ+I+                    LP+DF   
Sbjct: 539  -----KSEED--PPEPAILYPVELWTGKQIISHF------------------LPKDFNWV 573

Query: 692  RFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEK 751
            +  A K          K       H D                               E 
Sbjct: 574  QPTAFKS---------KCQDAYTCHGD-------------------------------EW 593

Query: 752  LLIYKNDLVRGVIDK----AQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
            +++    L +GV+DK    A+  D  L H +   Y  + A   L +  RLF  +L + GF
Sbjct: 594  IIVLNGYLAKGVLDKKSIGAEQVD-SLWHRIARDYPPDVARRWLDSSLRLFLRYLDLRGF 652

Query: 808  TCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGG 867
            T  +D + I  +  RE        EEI +    +AL+          K++  IE    G 
Sbjct: 653  TFAMDSVYIPTEAYRE-------VEEIIE----QALK----------KVEGLIEDFTSGR 691

Query: 868  GDAAVAY-----FDMKMTSQLN--KHTSSSVINELL---SEGLLKPTGKNWISLMTTSGA 917
             +A   +     F+ K+T  L+  +  ++ V+ + +   SEG           LM  +GA
Sbjct: 692  LEAMPGFTVEETFENKVTDILSRVREDAAQVVEKYIDKNSEGY----------LMAKTGA 741

Query: 918  KGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQ 977
            +GS VN  Q+ + LGQQ + G+R+ R    +TLP F   D    +GGF+   F  GL P 
Sbjct: 742  RGSLVNIVQMVATLGQQTIRGERIRRGFRSRTLPHFPVGDIGAFSGGFVKHCFRCGLTPV 801

Query: 978  EYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGED 1037
            EY+FH  AGR+GL+DTAV+T++SGY+QR LI  L+ + ++YD +VR     ++Q  YGED
Sbjct: 802  EYFFHAAAGRDGLIDTAVRTAQSGYMQRRLINALQDVYVAYDGTVRFGGSMLLQPLYGED 861

Query: 1038 GVDVHQT 1044
            GVDV ++
Sbjct: 862  GVDVSRS 868



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCGQ   +CPGHFGHI+LV PV +     ++Y +L+  C  C        E+ +   +
Sbjct: 67  CETCGQTHDVCPGHFGHIELVKPVVHVGFARVIYDILRTTCPNCGRIMLRDEEIARYRER 126

Query: 61  LELIIKGDIIAAKSL 75
           L  + K   + A++L
Sbjct: 127 LTRLSKRWRLLAQNL 141


>gi|303388581|ref|XP_003072524.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
            intestinalis ATCC 50506]
 gi|303301665|gb|ADM11164.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
            intestinalis ATCC 50506]
          Length = 1543

 Score =  335 bits (859), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 243/776 (31%), Positives = 374/776 (48%), Gaps = 129/776 (16%)

Query: 282  FFLGVVLVPPIKFRLPS--KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
              L V+LVPP   R PS    G    E   T  L+ ++++N YL   Y  +     ++  
Sbjct: 205  MILTVLLVPPPAVR-PSIVMEGSLRGEDDLTHKLADIIKSNGYLKK-YEQEGAPGHIVRD 262

Query: 340  RWMNLQQSVNVLFD----GKNAAGQRDM--ASGICQLLEKKEGLFRQKLMGKRVNYACRS 393
                LQ  V  L D    G+  A Q+       +   L+ KEG  R  LMGKRV+++ R+
Sbjct: 263  YEQLLQFHVATLIDNELGGQPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSART 322

Query: 394  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLST 453
            VI+PDP +++ E+G+P   A   T+PERVT +N+ KL   +  G   HPGA + L     
Sbjct: 323  VITPDPNISLEEVGVPLEVAKIHTFPERVTSFNIDKLEKLVRAGPNEHPGANYVLR---- 378

Query: 454  MRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLH 512
                       S G+K+D +          SD   E G +V RH+Q GDVVL NRQP+LH
Sbjct: 379  -----------SDGQKIDLNFNR-------SDIRLEEGYIVERHMQSGDVVLFNRQPSLH 420

Query: 513  KPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQ 572
            K S+MAH  RV+ G+KT R++ +  S YNADFDGDEMN+H PQ   S+AE   +   + Q
Sbjct: 421  KMSMMAHYARVM-GDKTFRLNLSVTSPYNADFDGDEMNLHMPQSYTSKAELEELALVSKQ 479

Query: 573  YVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQR 632
             + P +  P+  ++QD +    L T +DTFLN  E   LLY+  +  S        PG+ 
Sbjct: 480  IISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMLLLYAVNIEFSDTA-----PGET 534

Query: 633  VL--ISRS-EQEVLPLL--PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQD 687
                ++R+ + +++ +L  PAI KP  LWTGKQ+++ VL ++                  
Sbjct: 535  TYMGVNRTKDYDIMKVLKNPAIAKPMKLWTGKQILSFVLPNLNY---------------- 578

Query: 688  FFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKEL 747
               T F+++   D  +N                                          +
Sbjct: 579  ---TGFSSEHNEDDNEN------------------------------------------I 593

Query: 748  SEEKLLIYKNDLVRGVIDK--AQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQ-M 804
            ++ K++I    +  GVIDK  A     GL+H +   +G   A    + + ++  +F+  +
Sbjct: 594  NDTKVIIQNGYIHSGVIDKKAAGATQGGLIHIIFNDFGPKRAAQFFNGVQKMINIFMTGI 653

Query: 805  HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAM 864
            H F+ G+ D +      +     +  ++E                E+  I   +   +  
Sbjct: 654  HTFSIGIGDTIADAKTVKMVDEAIRKAKE----------------EVSIIIENARQNRLE 697

Query: 865  RGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNF 924
            R  G      F+  +   LN+    S  +   S      +G N +  M  +G+KGS +N 
Sbjct: 698  RLPGMTMKESFESHLNLVLNRARDVSGTSAQRS-----LSGNNNMKTMVLAGSKGSFINI 752

Query: 925  QQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCM 984
             Q+++ +GQQ +EGKR+P   S +TLP F   D+  ++ GF+ + +LTGL P+E++FH M
Sbjct: 753  SQVTACVGQQNVEGKRIPFGFSQRTLPHFVKDDYTGKSRGFVENSYLTGLDPEEFFFHAM 812

Query: 985  AGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             GREGL+DTA+KT+ +GY+QR L+K LE   +  D SVR  +G + Q  YGEDG D
Sbjct: 813  GGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNGLVYQVKYGEDGFD 868



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 53/70 (75%), Gaps = 2/70 (2%)

Query: 1128 LKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 1187
            +++++ K + +   P E VG LA+QSVGEP+TQMTLNTFHLAG     VT+G+PRL+EI 
Sbjct: 1031 VEMIRAKILKAKITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSS-TVTMGVPRLKEIF 1089

Query: 1188 TIASKDIKTP 1197
             + +K++KTP
Sbjct: 1090 NV-TKNLKTP 1098



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 6/76 (7%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVR- 59
           C++CG   F CPGHFGHI+L  P+++    + +  +L+ +CF+C   K S+R V   +  
Sbjct: 61  CQSCGGDNFSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKIKVSKRGVRSTLNN 120

Query: 60  -----KLELIIKGDII 70
                K +L+ +G+I+
Sbjct: 121 VWSMSKSKLVCEGEIL 136


>gi|237823477|pdb|2WAQ|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
            Directed Rna Polymerase
 gi|237823490|pdb|2WB1|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
            Directed Rna Polymerase
 gi|237823512|pdb|2WB1|W Chain W, The Complete Structure Of The Archaeal 13-Subunit Dna-
            Directed Rna Polymerase
 gi|323462788|pdb|2Y0S|A Chain A, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
            P21 Space Group
 gi|323462810|pdb|2Y0S|W Chain W, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
            P21 Space Group
 gi|400260742|pdb|4AYB|A Chain A, Rnap At 3.2ang
 gi|400260759|pdb|4B1O|A Chain A, Archaeal Rnap-Dna Binary Complex At 4.32ang
 gi|400260785|pdb|4B1P|W Chain W, Archaeal Rnap-Dna Binary Complex At 4.32ang
 gi|219814429|gb|ACL36488.1| RNA polymerase subunit 1N [Sulfolobus shibatae B12]
          Length = 880

 Score =  335 bits (859), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 269/829 (32%), Positives = 411/829 (49%), Gaps = 151/829 (18%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P  F +++      L PSD+++ +EK+ E++ E+  +     +  +          L V+
Sbjct: 161  PYNFYEERKEGVAKLTPSDIRERLEKVPESDVEILGYDPTTSRPEW--------MILTVL 212

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
             VPPI  R PS   +S +  E   T  L  +++ N  L  + ++      +I   W  LQ
Sbjct: 213  PVPPITIR-PSIMIESGIRAEDDLTHKLVDIVRINERLKES-IDAGAPQLIIEDLWDLLQ 270

Query: 346  QSVNVLFD--------GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
              V   FD         K+ +G R + + + Q L+ KEG FR  L GKRV+++ R+VISP
Sbjct: 271  YHVATYFDNEIPGLPPSKHRSG-RPLRT-LAQRLKGKEGRFRGNLSGKRVDFSSRTVISP 328

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DP ++++E+G+P   A  LT PER+TPWN+ KLR  +ING +  PGA + +         
Sbjct: 329  DPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIR-------- 380

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSI 516
            P+       GR++D      V+  K+  +    G +V RHL DGDVVL NRQP+LH+ S+
Sbjct: 381  PD-------GRRIDLR---YVKDRKELASTLAPGYVVERHLTDGDVVLFNRQPSLHRISM 430

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            MAH VRVLKG  T R++   C  YNADFDGDEMN+H PQ E + AEA  I+  +   + P
Sbjct: 431  MAHRVRVLKG-LTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITP 489

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
              G P+    QD+I  A LLT K T L ++E  Q+L   GV+              V I 
Sbjct: 490  RYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQIL---GVAD-------------VKID 533

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDF-FKTRFNA 695
              E       PAI  P   +TGKQV++A                   LP+DF F  + N 
Sbjct: 534  LGE-------PAILAPREYYTGKQVVSAF------------------LPKDFNFHGQANV 568

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
                   KN+                                        +   +  ++ 
Sbjct: 569  SSGPRLCKNE----------------------------------------DCPHDSYVVI 588

Query: 756  KND-LVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
            KN  L+ GV DK    +     ++H + + Y       L+  L R+F  F+++ GFT  +
Sbjct: 589  KNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRL 648

Query: 812  DDLLILKDKERERKNHLHGSEEIGKRVHLEAL-ELEDGAEIDPIKLKSEIEKAMRGGGDA 870
            +D+ +  D ++E  N +  +     +V ++ L +     E++PI  ++ +E+++      
Sbjct: 649  EDVSLGDDVKKEIYNEIDRA-----KVEVDNLIQKYKNGELEPIPGRT-LEESL------ 696

Query: 871  AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
                 +  +   L+K  S++   ++ S+  L P   N+  +M  +GA+GS +N  Q+++ 
Sbjct: 697  -----ENYILDTLDKLRSTA--GDIASK-YLDPF--NFAYVMARTGARGSVLNITQMAAM 746

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            LGQQ + G+R+ R    +TLP F P+D +P A GFI   F TGL+P E +FH   GREGL
Sbjct: 747  LGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGREGL 806

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            VDTAV+TS+SGY+QR LI  L  L+  YD +VR   G ++Q  YG+DGV
Sbjct: 807  VDTAVRTSQSGYMQRRLINALSDLRAEYDGTVRSLYGEVIQVAYGDDGV 855



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 37/75 (49%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG     CPGHFGHI+LV PV +      +Y  LK  C  C   K S  E+EK  R 
Sbjct: 58  CPTCGNTLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRI 117

Query: 61  LELIIKGDIIAAKSL 75
              I K    AA+ L
Sbjct: 118 YNAIKKRWPSAARRL 132


>gi|448115320|ref|XP_004202788.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
 gi|359383656|emb|CCE79572.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
          Length = 1454

 Score =  335 bits (859), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 232/766 (30%), Positives = 382/766 (49%), Gaps = 124/766 (16%)

Query: 286  VVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANI---YLANAYVNQPDNAKVIVARWM 342
            V + P +     S   D  ++  + V  S +++A I      N  + Q D  ++ VA ++
Sbjct: 265  VCIRPSVMMDTQSNEDDLTVKLTEIVWTSSLIRAGIEKGITINNLMEQWDYLQLSVAMYI 324

Query: 343  NLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLA 402
            N   + +        +       G CQ L+ K+G FR  L GKRV+++ R+V+SPDP L 
Sbjct: 325  NSDAANSAFLPSSGGSKSAKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVVSPDPNLR 384

Query: 403  VNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKM 462
            ++E+ +P   A  LTYPE  T +N  KL+  I+NG   +PGA +YL     M+     K 
Sbjct: 385  IDEVAVPDRVAKVLTYPEMCTRYNRKKLQRLILNGPNTYPGA-NYL-----MKQNEAAKR 438

Query: 463  RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
             +  G ++  ++           N   G +V RH++DGDVVL NRQP+LH+ SI++H  +
Sbjct: 439  NLRFGDRVKLAK-----------NLHIGDVVERHIEDGDVVLFNRQPSLHRLSILSHFAK 487

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            V +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA N++   N  + P +G+P+
Sbjct: 488  V-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAMNLMGVKNNLLTPKSGEPI 546

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
             +  QD I  + L++ KD+F +R    Q+L  S +S + +                + ++
Sbjct: 547  IAATQDFITGSYLISHKDSFYDRAALVQML--SMMSDANV----------------QYDI 588

Query: 643  LPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRK 702
             P  PAI+KP  LWTGKQ+ + ++      RP                            
Sbjct: 589  PP--PAIFKPVMLWTGKQLFSLLI------RP---------------------------- 612

Query: 703  KNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRG 762
                   +K +K+  +   K K  +    G   E  +N        +  ++I  + ++ G
Sbjct: 613  -------NKKSKVLINLDAKNKTFIPPLKGFPNEMSQN--------DGFVVIRGSQILSG 657

Query: 763  VIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKD 819
            V+DK+   D   + + +T+   YG + A   ++ +++L   F+   GF+ G++D +I + 
Sbjct: 658  VMDKSLLGDGKKHSVFYTILRDYGPDEAANAMNRMAKLCARFMGNRGFSIGIND-VIPRS 716

Query: 820  KERERKNHLHGSEEIGKRVHLEALELEDG-----AEIDPIKLKSEIEKAMRGGGDAAVAY 874
            + +++K      E + ++ +L+  EL D       E  P   + +  +A  GG       
Sbjct: 717  ELKQKK------ELMVEQAYLKCDELIDSYNRGKLETQPGCNEEQTLEAKIGG------- 763

Query: 875  FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
                + S++ +      I EL S         N   +M T G+KGS +N  Q+ + +GQQ
Sbjct: 764  ----LLSKVREQVGEICIKELDS--------ANAPLIMATCGSKGSTLNVSQMVAVVGQQ 811

Query: 935  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
             + G RVP     ++LP F      P++ GF+ + F +GL P E+ FH ++GREGLVDTA
Sbjct: 812  IISGNRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLSPTEFLFHAISGREGLVDTA 871

Query: 995  VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            VKT+ +GY+ R L+K+LE L   YD +VR++   +VQF YG DG+D
Sbjct: 872  VKTAETGYMSRRLMKSLEDLSTQYDNTVRNSSNGVVQFTYGGDGLD 917



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 56/85 (65%), Gaps = 1/85 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            +E A + FL    +K+  +  +PG  VG + + S+GEP TQMTL TFH AG   MNVTLG
Sbjct: 1054 SEKAIRSFLDQCVYKYFRAKVEPGTAVGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLG 1113

Query: 1180 IPRLQEILTIASKDIKTPVITCPLL 1204
            +PR++EI+  ASK I TP+I   L+
Sbjct: 1114 VPRIKEIIN-ASKVISTPIINSVLV 1137



 Score = 43.1 bits (100), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC      C GHFGHI L +PV++   F  + ++L+ IC  C
Sbjct: 67  CSTCHGNLASCHGHFGHIRLALPVFHVGYFKNIMSVLQSICKNC 110


>gi|427777531|gb|JAA54217.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
          Length = 1941

 Score =  335 bits (858), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 247/813 (30%), Positives = 383/813 (47%), Gaps = 142/813 (17%)

Query: 252  EKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVME 306
            E++WE    +   +S+ +    G   + A      + V+ VPP+  R P+    G +  +
Sbjct: 216  ERVWE----ILKHVSEEECMILGMDPRYAKPDWMLVTVLPVPPLAVR-PAVVMFGSARNQ 270

Query: 307  HPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASG 366
               T  L+ +++AN  L     +    A +I      LQ  V  L D +     R M   
Sbjct: 271  DDLTHKLADIVKANNELLRNEASGA-AAHIIAENIKMLQFHVATLVDNEMPGLPRAMQKS 329

Query: 367  ------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE 420
                  I Q L+ KEG  R  LMGKRV+++ R+VI+PDP L +NE+G+P   A  LT+PE
Sbjct: 330  GRPLKSIKQRLKSKEGRIRGNLMGKRVDFSARTVITPDPNLRINEVGVPRSIAQNLTFPE 389

Query: 421  RVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP 480
             VTP+N+ K+ D +  G   +PGA + +                  G ++D        P
Sbjct: 390  IVTPFNIDKMHDLVRRGNNQYPGAKYIIR---------------DNGERIDLR----FHP 430

Query: 481  GKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 539
             K SD   + G  V RH++DGD+++ NRQPTLHK S+M H ++VL    T RM+ +  + 
Sbjct: 431  -KASDLHLQCGYRVERHVRDGDIIVFNRQPTLHKMSMMGHKIKVLPW-STFRMNLSVTTP 488

Query: 540  YNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
            YNADFDGDEMN+H PQ   +RAE   +     Q + P +  P+  ++QD + +   +TK+
Sbjct: 489  YNADFDGDEMNLHVPQSLETRAEVEQLAMVPRQIITPQSNKPVMGIVQDTLTAVRKMTKR 548

Query: 600  DTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
            D FL +D+   +L         L  + GK              +P +PA+ KP+PLWTGK
Sbjct: 549  DIFLEKDQMMTILMF-------LPIWDGK--------------MP-MPAVLKPKPLWTGK 586

Query: 660  QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
            Q+ + +                  +P +                     L +T+  H D 
Sbjct: 587  QIFSLI------------------IPGNV-------------------NLIRTHSTHPD- 608

Query: 720  SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHT 777
                            E +    K     + K+LI   +L+ G++ K     +   L+H 
Sbjct: 609  ----------------EEDDGPYKWISPGDTKVLIEHGELISGIVCKKTVGASSGSLMHV 652

Query: 778  VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKR 837
            V    G   AG     +  +   +L + G T G+ D +  K    + KN +    E  K 
Sbjct: 653  VFAELGHEVAGAFYGHIQTVVNAWLLLEGHTIGIGDTIADKQTFIDIKNTI----EKAKH 708

Query: 838  VHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN--KHTSSSVINEL 895
              ++ +E     E++P              G+     F+ ++   LN  +  + +   + 
Sbjct: 709  DVIDVIEKAHNDELEP------------SPGNTLRQTFENQVNRILNDARDKTGASAQKS 756

Query: 896  LSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHP 955
            LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P     +TLP F  
Sbjct: 757  LSEF-------NNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 809

Query: 956  WDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK 1015
             D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY+QR LIK +E + 
Sbjct: 810  DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVM 869

Query: 1016 ISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS 1048
            I+YD +VR+++G ++Q  YGEDG+D     F S
Sbjct: 870  IAYDGTVRNSNGQVIQLRYGEDGLDGGTVEFQS 902



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 64/91 (70%), Gaps = 1/91 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            +++ A++F  +  + +  L  ++ +F  S  QPGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1048 SKRVAEEFRLSTESFEWLLGEIETRFHQSQGQPGEMVGALAAQSLGEPATQMTLNTFHYA 1107

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
            G    NVTLG+PRL+EI+ I SK  KTP +T
Sbjct: 1108 GVSAKNVTLGVPRLKEIINI-SKKPKTPSLT 1137



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHIDL  PV++         +L+ +CF+C
Sbjct: 69  CQTCAGNMTECPGHFGHIDLAKPVFHCGFLTKTIKILRCVCFYC 112


>gi|77176709|gb|ABA64469.1| DNA-dependent RNA polymerase II largest subunit [Glaucocystis
            nostochinearum]
          Length = 1852

 Score =  335 bits (858), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 240/738 (32%), Positives = 361/738 (48%), Gaps = 135/738 (18%)

Query: 313  LSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD----GKNAAGQRD--MASG 366
            L+ +++AN+ L    +N    A +I      LQ  V    D    G+  A QR       
Sbjct: 272  LADIVKANMNLKRQEMNGAP-AHIISEFQQLLQFHVATYVDNEIPGQPQACQRSGRPLKS 330

Query: 367  ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
            I Q L+ KEG  R  LMGKRV+++ R+VI+ DP L ++++G P   AL LTYPE VT +N
Sbjct: 331  ISQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLGIDQVGCPRSIALNLTYPEIVTKFN 390

Query: 427  VVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN 486
            + ++ + I NG   HPGA + +                  G++LD     +    K SD 
Sbjct: 391  MPRMYELIRNGPNEHPGARYIIR---------------DDGQRLD-----LRYIKKASDL 430

Query: 487  EFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
              E G  V RH+QDGD VL NRQP+LHK SIM H V+V+    T R++ +  + YNADFD
Sbjct: 431  HLEPGYRVERHIQDGDYVLFNRQPSLHKMSIMGHRVKVMP-YSTFRLNLSVTTPYNADFD 489

Query: 546  GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
            GDEMN+H  Q   +RAE   I     Q + P +  P+  ++QD ++++  +T +DTF+ +
Sbjct: 490  GDEMNMHVAQTFETRAEVQEICLVPRQIISPQSNRPVMGIVQDTLMASQKMTIRDTFIEK 549

Query: 606  DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
            D    +L         L SF G+              LP +PAI KP PLWTGKQ+ T  
Sbjct: 550  DVVMNILMH-------LDSFDGR--------------LP-IPAILKPRPLWTGKQLFTMF 587

Query: 666  LNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKE 725
            L ++                                       L +    H D      E
Sbjct: 588  LPNV--------------------------------------NLIRFCSQHPD-----NE 604

Query: 726  VVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYG 783
            V +  PG                + K++I + +L+ G++ K     +   L+H +   +G
Sbjct: 605  VSDISPG----------------DTKVIIEQGELLAGIVCKRTLGTSSGSLIHVIWNEHG 648

Query: 784  SNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL 843
             + A    S   ++   +L   GF+ G+ D  I  +   E  N   G+ +   RV    L
Sbjct: 649  HDIARVFFSMTQKVINNWLINVGFSIGIGD-TIADEATMETINQHIGTAK--TRVQQLIL 705

Query: 844  ELEDG-AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLK 902
            + +    E  P              G   +  F+ ++  +LN    ++  +   ++  LK
Sbjct: 706  DCQQNRLECQP--------------GRTLLESFENRVNKELNTARDNAGAS---AQKSLK 748

Query: 903  PTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRA 962
            P+  N +  M TSG+KGS +N  Q+ + +GQQ +EGKR+P     +TLP FH  D+ P +
Sbjct: 749  PS--NNVKAMVTSGSKGSFINISQMIACVGQQNVEGKRIPFGFRDRTLPHFHKNDYGPES 806

Query: 963  GGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSV 1022
             GF+ + +L GL PQE++FH M GREGL+DTAVKTS +GY+QR LIK +E + + YD ++
Sbjct: 807  RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLIKAMEDVMVQYDSTL 866

Query: 1023 RDADGSIVQFCYGEDGVD 1040
            R++ G I+QF YGEDG+D
Sbjct: 867  RNSIGDIIQFVYGEDGMD 884



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
             L  ++ +F+ ++A PGE VG +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI
Sbjct: 1055 LLGEIESRFLQAIANPGEMVGAIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEI 1114

Query: 1187 LTIASKDIKTPVITCPL 1203
            + +A K +KTP +   L
Sbjct: 1115 INVAKK-VKTPSLVVYL 1130



 Score = 48.1 bits (113), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREV 54
           C+TC      CPGHFGH++L  PV +      +  +L+ +CF C      + ++
Sbjct: 68  CQTCAGSMSECPGHFGHLELAKPVLHIGFMTTILKILRCVCFHCSKLLCDKSDI 121


>gi|307595331|ref|YP_003901648.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta distributa DSM
            14429]
 gi|307550532|gb|ADN50597.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta distributa DSM
            14429]
          Length = 891

 Score =  335 bits (858), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 256/819 (31%), Positives = 399/819 (48%), Gaps = 151/819 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            L P  +++ +EK+ +++ EL  +     +  +          L V+ VPP + R PS   
Sbjct: 190  LDPMKIRERLEKIPDSDLELLGWDPKFARPEWA--------ILTVLPVPPPQVR-PSIQL 240

Query: 302  DSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDG----- 354
            ++    E   T  L  +++ N  L  A ++    + V+   W  LQ  V   F+      
Sbjct: 241  ETGQRSEDDLTHKLVDIVRVNEKLRTA-IDSGAPSSVVDQLWDLLQYHVATYFNNELPNL 299

Query: 355  ---KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
               K+ +G R + + + Q L+ KEG FR  L GKRV+++ R+VISPDP L++NE+G+P  
Sbjct: 300  PPVKHRSG-RPLKT-LAQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLSINEVGVPID 357

Query: 412  FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATH--YLDKLSTMRLPPNKKMRISIGRK 469
             A  LT P  VT WN+   R  ++NG E+ PGA +  Y D                 GR+
Sbjct: 358  VAKILTVPMTVTEWNIEMARQLVLNGPEVWPGANYVVYPD-----------------GRR 400

Query: 470  LDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK 528
            +D       +  ++  N+   G +V RHL +GD+VL NRQP+LH+ S+M H+VRVL G +
Sbjct: 401  VDLR---YFRDRRELANKLAPGFIVERHLMNGDIVLFNRQPSLHRMSMMGHIVRVLPG-R 456

Query: 529  TLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQD 588
            T R+H A C  YNADFDGDEMN+H PQ+E +RAEA  ++   N  + P  G P+    QD
Sbjct: 457  TFRLHLAVCPPYNADFDGDEMNLHVPQNEEARAEAKTLMLVQNHIITPRYGGPIIGARQD 516

Query: 589  HIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPA 648
            +I    LLT+KDTF+N++    LL ++        ++ G+  +               PA
Sbjct: 517  YITGGYLLTRKDTFVNKELLMYLLAAA--------NYDGEIDE---------------PA 553

Query: 649  IWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
            I  P+ LWTGKQV++ +L        P  ++   K P + +   +               
Sbjct: 554  IMHPKELWTGKQVVSMLLPKDLNWVQPTAIKESCKDPYNCYTDEYIV------------- 600

Query: 709  LSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLI--YKNDLVRGVIDK 766
                             VV G        +K+   E+  S   +++  Y ND  R  +D 
Sbjct: 601  -----------------VVNGYMATGVLDKKSIGAEQVDSLWHVVVKRYGNDYARKWVD- 642

Query: 767  AQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKN 826
                                  ++L AL R    FL + GFT G+D L    +  RE  N
Sbjct: 643  ----------------------SVLRALLR----FLDLRGFTMGIDSL----EMPRESYN 672

Query: 827  HLHGSEEIGKRVHLEALE-LEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNK 885
             L    E  +R   + ++   +G      KL++E        G       +  +T +L++
Sbjct: 673  ELEKLYEESERKVFDYIQRFREG------KLEAE-------PGLTVEETLENDITIELSR 719

Query: 886  HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMV 945
               ++     ++E  +   G+ +I  M  +GA+GS VN  Q+ + +GQQ + G+R  R  
Sbjct: 720  VREAAA---RVAEKYINKDGEAYI--MAKTGARGSIVNITQMVAMIGQQTIRGERFKRGF 774

Query: 946  SGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQR 1005
            +G+T   F P D  P A GF+ + F  GL P E++FH   GR+GLVDTAV+T++SGY+QR
Sbjct: 775  TGRTTAHFEPGDLGPMAKGFVRNNFKVGLTPVEFFFHAAGGRDGLVDTAVRTAQSGYMQR 834

Query: 1006 CLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT 1044
             LI  L+ + ++YD +VR+A GSI+Q  Y EDG+DV ++
Sbjct: 835  RLINALQDIYVAYDGTVRNASGSIIQTKYAEDGIDVSKS 873



 Score = 48.9 bits (115), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG     CPGHFG I+L  PV +      ++ LL+  C  C     +  E+EK  ++
Sbjct: 72  CETCGNPPDKCPGHFGRIELARPVIHVEYAKYIHDLLRTTCRECGRILLTDEEIEKYSKR 131

Query: 61  L-ELIIKGDIIAAKSLD 76
           L  L ++  ++A + ++
Sbjct: 132 LARLRVRWKLLADRLIE 148


>gi|50549343|ref|XP_502142.1| YALI0C22550p [Yarrowia lipolytica]
 gi|49648009|emb|CAG82462.1| YALI0C22550p [Yarrowia lipolytica CLIB122]
          Length = 1483

 Score =  334 bits (857), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 238/759 (31%), Positives = 364/759 (47%), Gaps = 118/759 (15%)

Query: 290  PPIKFRLPSKGGDSVM-EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSV 348
            PP+  R PS   DS   E   TV L++++  +  +  A + Q      ++ +W  LQ +V
Sbjct: 264  PPVCIR-PSVMQDSASNEDDLTVKLTEIVWTSAII-EAGLKQGMAVASLMEQWELLQLAV 321

Query: 349  NVLFDGKNAAGQRDMAS----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVN 404
             V  +     G    AS     + Q L+ K+G FR  L GKRV+++ R+VISPDP L ++
Sbjct: 322  AVYINSDTPQGPGQSASKPIRALTQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRID 381

Query: 405  EIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRI 464
            ++ +P   A  LTYPERVT  N+ KLR+ +I G   HPGA +   K  ++R       R 
Sbjct: 382  QVAVPDRVAKILTYPERVTSHNIEKLRNLVITGPSQHPGANYLFKKGESLRRNLRFGDRA 441

Query: 465  SIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVL 524
             I  +L+                  G +V RHL+DGDVVL NRQP+LH+ SI+AH  ++ 
Sbjct: 442  KIAERLEI-----------------GDVVERHLEDGDVVLFNRQPSLHRLSILAHFAQI- 483

Query: 525  KGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRS 584
            +  +T R++   C+ YNADFDGDEMN+H PQ E +R EA  ++   +  V P +G+P+ +
Sbjct: 484  RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARTEAMCLMGVKHNLVTPRSGEPIIA 543

Query: 585  LIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLP 644
              QD I  + L++KKD  ++R  FCQLL    + S G   F   P               
Sbjct: 544  ATQDFITGSFLISKKDYMIDRRTFCQLL---AMMSDGDMQFDIPP--------------- 585

Query: 645  LLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKN 704
              PAI KP  LWTGKQV + ++      RP                              
Sbjct: 586  --PAIQKPVQLWTGKQVFSLLI------RP------------------------------ 607

Query: 705  DKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVI 764
                 +K++K+  +   K K       G  ++   N        +  L+I  + ++ G +
Sbjct: 608  -----NKSSKVIINLDAKNKTFQPPPQGYPRDMSPN--------DGFLVIRNSQVMCGAM 654

Query: 765  DKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKE 821
            DKA   D     + +++   YG + A   ++ +++L   +L   GF+ G+ D  +    E
Sbjct: 655  DKATLGDGKKDSVFYSILRDYGPDEAAGAMNRMAKLCARWLGGRGFSIGISD--VTPGAE 712

Query: 822  RERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTS 881
                  +   +   K   L     +   E  P    ++  +A  GG           + S
Sbjct: 713  LSSTKEILVEQAYAKCDELIEALAQGKLEPQPGCTPAQTLEAKIGG-----------LLS 761

Query: 882  QLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRV 941
            ++ +      I EL           N   +M T G+KGS +N  Q+ + +GQQ + GKRV
Sbjct: 762  KVREEVGEVCIKEL--------EKSNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGKRV 813

Query: 942  PRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSG 1001
            P     ++LP F  +   P + GF+ + F +GL P E+ FH ++GREGLVDTAVKT+ +G
Sbjct: 814  PNGFQDRSLPHFRKFSVTPPSKGFVRNSFYSGLDPPEFLFHAISGREGLVDTAVKTAETG 873

Query: 1002 YLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            Y+ R L+K+LE L   YD +VR +   +VQF YG DG+D
Sbjct: 874  YMSRRLMKSLEDLSARYDSTVRTSSNGVVQFRYGGDGLD 912



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 53/77 (68%), Gaps = 1/77 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            FL+    K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR++EI
Sbjct: 1081 FLQACLRKYQKAQVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI 1140

Query: 1187 LTIASKDIKTPVITCPL 1203
            +  ASK I TP+IT  L
Sbjct: 1141 IN-ASKAISTPIITTVL 1156



 Score = 48.9 bits (115), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           CKTC +    CPGHFGH+ L +P ++   F    ++L+ +C  C     S  +  K + +
Sbjct: 75  CKTCAEPLATCPGHFGHVKLALPCFHIGYFKATISILQNVCKDCARILLSDEDRRKFLTE 134

Query: 61  L 61
           L
Sbjct: 135 L 135


>gi|254584114|ref|XP_002497625.1| ZYRO0F09856p [Zygosaccharomyces rouxii]
 gi|238940518|emb|CAR28692.1| ZYRO0F09856p [Zygosaccharomyces rouxii]
          Length = 1458

 Score =  334 bits (857), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 230/721 (31%), Positives = 359/721 (49%), Gaps = 115/721 (15%)

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMG 384
            N  +   D  ++ VA ++N   SVN         G+     G CQ L+ K+G FR  L G
Sbjct: 310  NNMMEHWDYLQLAVAMYIN-SDSVNPAILSGGTGGKVKPIRGFCQRLKGKQGRFRGNLSG 368

Query: 385  KRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGA 444
            KRV+++ R+VISPDP L+V+E+ +P   A  LTYPERVT +N  KL+  ++NG   +PGA
Sbjct: 369  KRVDFSGRTVISPDPNLSVDEVAVPDRVAKVLTYPERVTRYNKGKLQQLVVNGPNEYPGA 428

Query: 445  THYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVL 504
             + L K    R       R+ + + L                   G +V RHL+DGDVVL
Sbjct: 429  NYLLKKDEDARRNLRFGDRVKLAKNLRI-----------------GDLVERHLEDGDVVL 471

Query: 505  VNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAY 564
             NRQP+LH+ SI++H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA 
Sbjct: 472  FNRQPSLHRLSILSHYAKI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQSEEARAEAI 530

Query: 565  NIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGS 624
            N++   +  + P +G+P+ +  QD I  + L++ KD+F ++ +  QLL    + S G   
Sbjct: 531  NLMGVKSNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDKYDMTQLL---SMMSDGALQ 587

Query: 625  FTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKL 684
            F   P                 P IWKP  LWTGKQ+ + ++      RP          
Sbjct: 588  FDIPP-----------------PTIWKPCYLWTGKQIFSLLI------RP---------- 614

Query: 685  PQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKE 744
                       +K+S    N    L   NK++                      K+KS  
Sbjct: 615  -----------NKKSPVVLN----LDAKNKVYI-------------------PPKSKSLP 640

Query: 745  KELSEEK--LLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFT 799
             E+S+    +LI  + ++ GV+DK+   D   + + +T+   YGS  A   ++ +++L  
Sbjct: 641  NEMSQNDGFVLIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGSQEAAEAMNRMAKLCA 700

Query: 800  VFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSE 859
             ++   GF+ G+ D+   ++ + +++  +  +    K   L  L  +   E  P   + +
Sbjct: 701  RYVGNRGFSIGISDVTPAEELKEKKEEMVESA--YAKCDELIDLFSKGKLETQPGCNEEQ 758

Query: 860  IEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKG 919
              +A  GG           + S++ +      INEL           N   +M T G+KG
Sbjct: 759  TLEAKIGG-----------LLSKVREEVGEVCINEL--------DNMNAPLIMATCGSKG 799

Query: 920  SKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEY 979
            S +N  Q+ + +GQQ + G RVP     ++LP F      P++ GF+ + F +GL P E+
Sbjct: 800  STLNVSQMVAVVGQQIISGSRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLTPPEF 859

Query: 980  YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
             +H ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR +   IVQF YG DG+
Sbjct: 860  LYHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCLYDNTVRTSSNGIVQFTYGGDGL 919

Query: 1040 D 1040
            D
Sbjct: 920  D 920



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 61/97 (62%), Gaps = 7/97 (7%)

Query: 1108 DNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFH 1167
            D   +  DK +      ++FL++   K+  +  +PG  VG + +QS+GEP TQMTL TFH
Sbjct: 1055 DQVYRITDKMV------REFLRVAILKYRRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFH 1108

Query: 1168 LAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
             AG   MNVTLG+PR++EI+  ASK I TP+I   L+
Sbjct: 1109 FAGVASMNVTLGVPRIKEIIN-ASKVISTPIINAVLV 1144



 Score = 42.4 bits (98), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      C GHFGHI L +PV++   F     +L+ IC  C
Sbjct: 67  CQTCHGNLASCHGHFGHIKLALPVFHIGYFKATIQILQGICKEC 110


>gi|227830881|ref|YP_002832661.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
            L.S.2.15]
 gi|229579767|ref|YP_002838166.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
            Y.G.57.14]
 gi|229581564|ref|YP_002839963.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
            Y.N.15.51]
 gi|227457329|gb|ACP36016.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
            L.S.2.15]
 gi|228010482|gb|ACP46244.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
            Y.G.57.14]
 gi|228012280|gb|ACP48041.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
            Y.N.15.51]
          Length = 880

 Score =  334 bits (857), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 268/831 (32%), Positives = 409/831 (49%), Gaps = 155/831 (18%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P  F +++      L PSD+++ +EK+ E++ E+  +     +  +          L V+
Sbjct: 161  PYNFYEERKEGVAKLTPSDIRERLEKVPESDVEILGYDPTTSRPEW--------MILTVL 212

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
             VPPI  R PS   +S +  E   T  L  +++ N  L  + ++      +I   W  LQ
Sbjct: 213  PVPPITIR-PSIMIESGIRAEDDLTHKLVDIVRINERLKES-IDAGAPQLIIEDLWDLLQ 270

Query: 346  QSVNVLFD--------GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
              V   FD         K+ +G R + + + Q L+ KEG FR  L GKRV+++ R+VISP
Sbjct: 271  YHVATYFDNEIPGLPPSKHRSG-RPLRT-LAQRLKGKEGRFRGNLSGKRVDFSSRTVISP 328

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DP ++++E+G+P   A  LT PER+TPWN+ KLR  +ING +  PGA + +         
Sbjct: 329  DPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIR-------- 380

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSI 516
            P+       GR++D      V+  K+  +    G +V RHL DGDVVL NRQP+LH+ S+
Sbjct: 381  PD-------GRRIDLR---YVKDRKELASTLAPGYVVERHLTDGDVVLFNRQPSLHRISM 430

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            MAH VRVLKG  T R++   C  YNADFDGDEMN+H PQ E + AEA  I+  +   + P
Sbjct: 431  MAHRVRVLKG-LTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITP 489

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
              G P+    QD+I  A LLT K T L ++E  Q+L   GV+              V I 
Sbjct: 490  RYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQIL---GVAD-------------VKID 533

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDF-FKTRFNA 695
              E       PAI  P   +TGKQ+++A                   LP+DF F  + N 
Sbjct: 534  LGE-------PAILAPREYYTGKQIVSAF------------------LPKDFNFHGQANV 568

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
                   KN+                                        +   +  ++ 
Sbjct: 569  SSGPRLCKNE----------------------------------------DCPHDSYVVI 588

Query: 756  KND-LVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
            KN  L+ GV DK    +     ++H + + Y       L+  L R+F  F+++ GFT  +
Sbjct: 589  KNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRL 648

Query: 812  DDLLILKDKERERKNHLHGSEEIGKRVHLEA---LELEDGAEIDPIKLKSEIEKAMRGGG 868
            +D+ +  D ++E  N +        R  +E    ++     E++PI  ++ +E+++    
Sbjct: 649  EDVSLGDDVKKEIYNEI-------DRAKVEVNNLIQKYKNGELEPIPGRT-LEESL---- 696

Query: 869  DAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQIS 928
                   +  +   L+K  S++   ++ S+  L P   N+  +M  +GA+GS +N  Q++
Sbjct: 697  -------ENYILDTLDKLRSTA--GDIASK-YLDPF--NFAYVMARTGARGSVLNITQMA 744

Query: 929  SHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGRE 988
            + LGQQ + G+R+ R    +TLP F P+D +P A GFI   F TGL+P E +FH   GRE
Sbjct: 745  AMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGRE 804

Query: 989  GLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            GLVDTAV+TS+SGY+QR LI  L  L+  YD +VR   G ++Q  YG+DGV
Sbjct: 805  GLVDTAVRTSQSGYMQRRLINALSDLRAEYDGTVRSLYGEVIQVAYGDDGV 855



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 37/75 (49%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG     CPGHFGHI+LV PV +      +Y  LK  C  C   K S  E+EK  R 
Sbjct: 58  CPTCGNTLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRI 117

Query: 61  LELIIKGDIIAAKSL 75
              I K    AA+ L
Sbjct: 118 YNAIKKRWPSAARRL 132


>gi|406863545|gb|EKD16592.1| DNA-directed RNA polymerase III [Marssonina brunnea f. sp.
            'multigermtubi' MB_m1]
          Length = 1965

 Score =  334 bits (857), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 239/791 (30%), Positives = 382/791 (48%), Gaps = 134/791 (16%)

Query: 266  SDMQQQGFGKKAGH-SIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA 324
            SD +  G     G   +F    V  PPI  R      ++  E   T  L +++Q +  L 
Sbjct: 739  SDCELLGLNPLEGRPEMFIWQFVPAPPICIRPSVAQENASTEDDLTTKLGEIVQVS-SLI 797

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASG-----ICQLLEKKEGLFR 379
             A + +    + IV +W  LQ ++  L+   +  G +D  +G      CQ L+ K+G FR
Sbjct: 798  RAALQRGQPIQTIVEQWDFLQTAI-ALYVNSDVPGLQDKGNGKPMRGFCQRLKGKQGRFR 856

Query: 380  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
              L GKRV+++ R+VISPDP L ++++ +P   A+ +TYPER    N+ KLR  + NG  
Sbjct: 857  GNLSGKRVDFSARTVISPDPNLGIDQVAVPILVAMNMTYPERAQKNNIEKLRRLVRNGPS 916

Query: 440  IHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQD 499
             HPGA   + K S      + K+ +   R+   ++   +           G +V RHL+D
Sbjct: 917  KHPGAQQIIKKGS------DHKISLKFARREIEAQHLKI-----------GDVVERHLED 959

Query: 500  GDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVS 559
            GD++L NRQP+LHK SIM+H  ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +
Sbjct: 960  GDIILFNRQPSLHKLSIMSHYAKI-RPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEA 1018

Query: 560  RAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL-LYSSGVS 618
            R EA N++   N    P NG+P+ S  QD I +A LL+ K+ F +R  F  L +Y     
Sbjct: 1019 RTEAINLMGVKNNLSTPKNGEPIISATQDFITAAYLLSSKENFFDRKTFTNLCMY----- 1073

Query: 619  SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVV 678
                          ++   +  +V P  PAI KP+ LWTGKQV +A++      RP    
Sbjct: 1074 --------------MVDGNTHLDVPP--PAIIKPQALWTGKQVFSALM------RP---- 1107

Query: 679  ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 738
                                     N K  +    K++ D   +  + V G         
Sbjct: 1108 -------------------------NKKSPV----KVNLDAKCRDYQFVPG--------- 1129

Query: 739  KNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALS 795
              +  + ++++  L++  ++++ G +DK          + + +   +G + A   ++ LS
Sbjct: 1130 --QCPDMDINDGWLVVRNSEVMCGRMDKTTVGSGKKDSIFYIILRDFGPDEAVLAMNRLS 1187

Query: 796  RLFTVFLQMHGFTCGVDDLLILKD----KERERKNHLHGSEEIGKRVHLEALELEDGAEI 851
            ++   +L   GF+ G+ D+   KD    K R        SE++ ++     L+   G   
Sbjct: 1188 KISARYLTNMGFSIGISDVYPSKDLTAAKSRLVLKAYAQSEDLIQQFQNGTLQKSTGC-- 1245

Query: 852  DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS- 910
                ++  +E  + G            + S++ +      I+ L            W S 
Sbjct: 1246 ---NMEETLENVISG------------VLSKVRQSAGEYCISTL----------SKWNSP 1280

Query: 911  -LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDR 969
             +M  SG+KGS +N  Q+ + +GQQ + GKRV      +TLP F      P + GF+ + 
Sbjct: 1281 LIMAKSGSKGSTINVAQMVAVVGQQIIGGKRVQDGFQDRTLPHFPKNARQPPSKGFVRNS 1340

Query: 970  FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSI 1029
            F TGLRP E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++ G +
Sbjct: 1341 FFTGLRPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRNSSGIV 1400

Query: 1030 VQFCYGEDGVD 1040
            VQF +G D +D
Sbjct: 1401 VQFQFGADKLD 1411



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 54/77 (70%), Gaps = 1/77 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            F+ L   K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   M++T G+PR++EI
Sbjct: 1556 FITLCLSKYAKAHVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEI 1615

Query: 1187 LTIASKDIKTPVITCPL 1203
            +  ASK I TPVI+CPL
Sbjct: 1616 IN-ASKVISTPVISCPL 1631



 Score = 43.9 bits (102), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 29/61 (47%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG     C GHFGHI L +PV++     L    L+ IC  C     +  E    +++
Sbjct: 569 CGTCGDILANCNGHFGHIRLALPVFHIGYLKLTMKFLQEICKECARVLLTDTERRSFLQR 628

Query: 61  L 61
           L
Sbjct: 629 L 629


>gi|3511287|gb|AAC62246.1| DNA-dependent RNA polymerase II largest subunit, partial [Breviata
            anathema]
          Length = 1690

 Score =  334 bits (856), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 256/797 (32%), Positives = 383/797 (48%), Gaps = 142/797 (17%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSV--MEHPQTVLLSKVLQANIYL------ANAYVNQPDN 333
              + ++ VPP+  R PS    SV   E   T  LS +++ N  +        A +N  D 
Sbjct: 148  MMITLLPVPPMTVR-PSIAFGSVGRAEDDLTKQLSTIVKNNAQIRKLKLDGAAPINIQDT 206

Query: 334  AKVIVARWMNLQQSVNVLFDG------KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRV 387
              V       LQ +V   FD       K   G R + S + + L  KEG  R +LMGKRV
Sbjct: 207  LDV-------LQINVACFFDNSVPSLEKAKNGNRPIKS-LSERLRGKEGRVRGQLMGKRV 258

Query: 388  NYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY 447
            +++ RSVI+PDP LA+NE+G+P   A  LT PE V+P N+ +L   + NG   +PGA + 
Sbjct: 259  DFSARSVITPDPTLALNELGVPRTVASNLTVPEMVSPLNIHRLAALVRNGPGTYPGAKYV 318

Query: 448  LDKLSTMRLPPNKKMRISIGRKLDTSRGAI-VQPGKDSDNEFEGKMVYRHLQDGDVVLVN 506
            +          +   RI++     TSRG + + P         G ++ RHL DGD V+ N
Sbjct: 319  IR---------DDGARIAL-----TSRGDMPIVP---------GYIIERHLMDGDHVVFN 355

Query: 507  RQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNI 566
            RQP+LHK S+M H VRVL    + R++ +  + YNADFDGDEMN+H P    + +E  N+
Sbjct: 356  RQPSLHKMSMMGHQVRVLP-YSSFRLNLSVTTPYNADFDGDEMNMHVPNSLEAISEVKNL 414

Query: 567  VNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFT 626
            +    Q V P    P   ++QD ++  +L++++DTFL  D    L               
Sbjct: 415  MAVPFQIVTPQKNSPCMGVVQDSLLGCSLISRRDTFLTEDVMMNL--------------- 459

Query: 627  GKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQ 686
                   L+   + + +P  PAI +P+PLWTGKQ  + +L        P  +   GK   
Sbjct: 460  ------ALVISYDPDKIP-QPAILRPKPLWTGKQAFSMLL--------PKDLSYKGKC-- 502

Query: 687  DFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKE 746
             F+   FNA++   R+                                  A   +     
Sbjct: 503  GFY---FNAEQSVSREV---------------------------------AAAQEEYMNS 526

Query: 747  LSEEKLLIYKNDLVRGVIDKAQFADYG---LVHTVQELYGSNTAGTLLSALSRLFTVFLQ 803
            L +  + I K  L  GVI        G   ++H + +  G   A   LS +  L   ++ 
Sbjct: 527  LLDSVVRIKKGQLHTGVITNKAVGKSGQGSIIHILWKDQGPMAARDFLSRVQLLTNAYIL 586

Query: 804  MHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
              GF+ G +D L   D  +  K  + G++    ++H+      D A    +K+++     
Sbjct: 587  TRGFSVGTEDTLADPDTLQAVKAEIEGAKR-NVKIHI------DDARAGRLKVQA----- 634

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                G + V  F+ K    L    S++    L S   LK    N   LM  SG+KGS++N
Sbjct: 635  ----GRSLVESFEAKTNKSLQDALSNAGKKSLSS---LK--YDNNFKLMIESGSKGSEMN 685

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              QI+  +GQQ +EGKR+      +TLP F   D+ P A GF+ + +++GL PQE++FH 
Sbjct: 686  ICQITGMVGQQNVEGKRIAFGFQRRTLPHFRKDDYEPEARGFVENSYVSGLSPQEFFFHM 745

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD--V 1041
            M GREGL+DTAVKTS SGY+QR L+K++E + + YD +VR+A G I+QF YGEDG+D   
Sbjct: 746  MGGREGLIDTAVKTSESGYIQRKLMKSMEDISVKYDTTVRNAAGMILQFAYGEDGIDGTA 805

Query: 1042 HQTSFISKFDALAARER 1058
            H+   I   +A  A+ R
Sbjct: 806  HENQDIPSLNADDAKMR 822



 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 53/70 (75%), Gaps = 1/70 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            V+ KF  +L  PGE VG +A+QS GEP+TQMTLNTFH AG G  NVTLG+PRL+E++ + 
Sbjct: 988  VREKFGRALVAPGEMVGAIAAQSFGEPTTQMTLNTFHSAGVGTKNVTLGVPRLKELINV- 1046

Query: 1191 SKDIKTPVIT 1200
            +  ++TP I+
Sbjct: 1047 NMALRTPNIS 1056


>gi|156937038|ref|YP_001434834.1| DNA-directed RNA polymerase subunit A' [Ignicoccus hospitalis KIN4/I]
 gi|156566022|gb|ABU81427.1| DNA-directed RNA polymerase, subunit A' [Ignicoccus hospitalis
            KIN4/I]
          Length = 889

 Score =  334 bits (856), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 262/805 (32%), Positives = 376/805 (46%), Gaps = 146/805 (18%)

Query: 267  DMQQQGFG-KKAGHSIFFLGVVLVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYL 323
            D +  GF  K+A      L V+ VPP+  R PS   ++ M  E   T  L+ +++ N  L
Sbjct: 200  DAKVLGFDPKEARPEWAVLTVLPVPPVTVR-PSIILETGMRSEDDLTHKLADIVRTNNKL 258

Query: 324  ANAYVNQPDNAKVIVARWMNLQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGL 377
                 +    A +I   W  LQ  V   FD    G   A  R       + Q L+ KEG 
Sbjct: 259  RENIESGASEA-MIENLWGLLQYHVATFFDNEIPGIPPARHRSGKPLRTLAQRLKGKEGR 317

Query: 378  FRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIING 437
            FR  L GKRV+++ R+VISPDP +++NE+G+P   A  LT P +VTPWN+ ++R  +ING
Sbjct: 318  FRSNLSGKRVDFSARTVISPDPNISINEVGVPIEVAKTLTVPVKVTPWNIEEMRKLVING 377

Query: 438  AEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
             +  PGA + +     M+      +R +  RK+       +QP         G  V RHL
Sbjct: 378  PDKWPGANYVI-----MKDGRRIDLRYAKDRKIIAES---LQP---------GWTVERHL 420

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            QDGDVVL NRQP+LH+ SIMAH+VRVL G KT R+    C  YNADFDGDEMN+H PQ E
Sbjct: 421  QDGDVVLFNRQPSLHRMSIMAHLVRVLPG-KTFRLCPLVCPPYNADFDGDEMNLHVPQSE 479

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
             +RAEA  ++      + P  G P+   +QD+I  A LLT   T L+R +  +LL     
Sbjct: 480  EARAEALELMLVEKHILSPRYGGPIIGGLQDYISGAYLLTTVATLLDRSDVQELL----- 534

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
               G+  + G+              LP  PAI  P+ +WTGKQ+ +              
Sbjct: 535  ---GVTGYEGE--------------LP-EPAILSPKTVWTGKQLFSVF------------ 564

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEA 737
                  LP+DF               N  GK + +                         
Sbjct: 565  ------LPKDF---------------NYSGKANIST-----------------------G 580

Query: 738  EKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSAL 794
            E     E    +  +++   +LV GV+DK          L+H +   YG      +    
Sbjct: 581  ELKCDDEYCFYDSFVVVRDGELVEGVLDKKSIGHEQPKSLMHWIVYEYGPEKGREIYDRA 640

Query: 795  SRLFTVFLQMHGFTCGVDDLLILKDKERERKNHL-HGSEEIGKRVH------LEALELED 847
             ++F  F++  GFT   DD+ +  + ++E +  L    EE+ K +       LE L    
Sbjct: 641  FKMFLRFIEKRGFTTRYDDVRLPPEAKKEIEEVLKEAYEEVEKLIEDFKNGLLEPLPGRT 700

Query: 848  GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKN 907
              E   + +   + KA    G+ A  Y      S LN                       
Sbjct: 701  LEETLELMIMDVLAKARDKAGEIAAKYL-----SPLNNAV-------------------- 735

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
               +M  +GA+G+ +N  Q+++ LGQQ + G+R+ R    +TLP F   D +P A GF+ 
Sbjct: 736  ---IMAKAGARGNILNLTQMAALLGQQSVRGERIKRGYRKRTLPHFEWGDISPDARGFVK 792

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
              F  GL P E +FH   GREGLVDTAV+TS+SGY+QR LI  L+ LK+ YD +V+DA G
Sbjct: 793  HSFYEGLTPTEVFFHAAGGREGLVDTAVRTSQSGYMQRRLINALQDLKVDYDGTVKDAWG 852

Query: 1028 SIVQFCYGEDGVDVHQTSFISKFDA 1052
            ++ Q  YG+DGVD  +++     D 
Sbjct: 853  ALYQSVYGDDGVDPMKSAHGESVDV 877



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 24/182 (13%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG     CPGHFG+I+LV PV +      +Y  L+  C  C   K S  E++K +R 
Sbjct: 67  CPTCGNTLHDCPGHFGYIELVKPVIHYEFVPHIYDALRATCRVCGRVKLSDEEIDKFLRL 126

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
            E + K   + A+ +             + V  K++  M  P   +   +  K +     
Sbjct: 127 YEKLEKKWPLLARRV------------TAFVRKKAAKVMECP---HCGAKQYKIKLEKPY 171

Query: 121 QFAEAKLALLQFLKIET--TKCGNCKAK-------NPRISKPTFGWIHMNGMPHADIRAN 171
            F E ++  L +L  E   ++  N   K       +P+ ++P +  + +  +P   +R +
Sbjct: 172 NFIEERMPRLHYLNPEEVRSRLENIPDKDAKVLGFDPKEARPEWAVLTVLPVPPVTVRPS 231

Query: 172 LI 173
           +I
Sbjct: 232 II 233


>gi|227828174|ref|YP_002829954.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
            M.14.25]
 gi|229585403|ref|YP_002843905.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
            M.16.27]
 gi|385773844|ref|YP_005646411.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
            HVE10/4]
 gi|385776479|ref|YP_005649047.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus REY15A]
 gi|227459970|gb|ACP38656.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
            M.14.25]
 gi|228020453|gb|ACP55860.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
            M.16.27]
 gi|323475227|gb|ADX85833.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus REY15A]
 gi|323477959|gb|ADX83197.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
            HVE10/4]
          Length = 880

 Score =  334 bits (856), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 268/831 (32%), Positives = 409/831 (49%), Gaps = 155/831 (18%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P  F +++      L PSD+++ +EK+ E++ E+  +     +  +          L V+
Sbjct: 161  PYNFYEERKEGVAKLTPSDIRERLEKVPESDVEILGYDPTTSRPEW--------MILTVL 212

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
             VPPI  R PS   +S +  E   T  L  +++ N  L  + ++      +I   W  LQ
Sbjct: 213  PVPPITIR-PSIMIESGIRAEDDLTHKLVDIVRINERLKES-IDAGAPQLIIEDLWDLLQ 270

Query: 346  QSVNVLFD--------GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
              V   FD         K+ +G R + + + Q L+ KEG FR  L GKRV+++ R+VISP
Sbjct: 271  YHVATYFDNEIPGLPPSKHRSG-RPLRT-LAQRLKGKEGRFRGNLSGKRVDFSSRTVISP 328

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DP ++++E+G+P   A  LT PER+TPWN+ KLR  +ING +  PGA + +         
Sbjct: 329  DPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIR-------- 380

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSI 516
            P+       GR++D      V+  K+  +    G +V RHL DGDVVL NRQP+LH+ S+
Sbjct: 381  PD-------GRRIDLR---YVKDRKELASTLAPGYVVERHLTDGDVVLFNRQPSLHRISM 430

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            MAH VRVLKG  T R++   C  YNADFDGDEMN+H PQ E + AEA  I+  +   + P
Sbjct: 431  MAHRVRVLKG-LTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITP 489

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
              G P+    QD+I  A LLT K T L ++E  Q+L   GV+              V I 
Sbjct: 490  RYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQIL---GVAD-------------VKID 533

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDF-FKTRFNA 695
              E       PAI  P   +TGKQ+++A                   LP+DF F  + N 
Sbjct: 534  LGE-------PAILAPREYYTGKQIVSAF------------------LPKDFNFHGQANV 568

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
                   KN+                                        +   +  ++ 
Sbjct: 569  SSGPRLCKNE----------------------------------------DCPHDSYVVI 588

Query: 756  KND-LVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
            KN  L+ GV DK    +     ++H + + Y       L+  L R+F  F+++ GFT  +
Sbjct: 589  KNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRL 648

Query: 812  DDLLILKDKERERKNHLHGSEEIGKRVHLEA---LELEDGAEIDPIKLKSEIEKAMRGGG 868
            +D+ +  D ++E  N +        R  +E    ++     E++PI  ++ +E+++    
Sbjct: 649  EDVSLGDDVKKEIYNEI-------DRAKVEVNNLIQKYKNGELEPIPGRT-LEESL---- 696

Query: 869  DAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQIS 928
                   +  +   L+K  S++   ++ S+  L P   N+  +M  +GA+GS +N  Q++
Sbjct: 697  -------ENYILDTLDKLRSTA--GDIASK-YLDPF--NFAYVMARTGARGSVLNITQMA 744

Query: 929  SHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGRE 988
            + LGQQ + G+R+ R    +TLP F P+D +P A GFI   F TGL+P E +FH   GRE
Sbjct: 745  AMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGRE 804

Query: 989  GLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            GLVDTAV+TS+SGY+QR LI  L  L+  YD +VR   G ++Q  YG+DGV
Sbjct: 805  GLVDTAVRTSQSGYMQRRLINALSDLRAEYDGTVRSLYGEVIQVAYGDDGV 855



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 37/75 (49%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG     CPGHFGHI+LV PV +      +Y  LK  C  C   K S  E+EK  R 
Sbjct: 58  CPTCGNTLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRI 117

Query: 61  LELIIKGDIIAAKSL 75
              I K    AA+ L
Sbjct: 118 YNAIKKRWPSAARRL 132


>gi|195399321|ref|XP_002058269.1| GJ15582 [Drosophila virilis]
 gi|194150693|gb|EDW66377.1| GJ15582 [Drosophila virilis]
          Length = 1044

 Score =  334 bits (856), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 281/962 (29%), Positives = 448/962 (46%), Gaps = 180/962 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--- 298
            L P  V D+ E++ +++  L    S       G    H I  +  V VPP   R PS   
Sbjct: 217  LTPLMVLDLFEQIPQSDVALLGMCSR------GAHPKHLI--VTRVFVPPACIR-PSVLS 267

Query: 299  --KGG----DSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLF 352
              K G    D  M+  + +L++ V+Q ++             ++I   W  LQ  V + F
Sbjct: 268  EVKAGTTEDDLTMKQSEILLINDVIQRHMATGG-------KIELIHEDWDFLQLHVALYF 320

Query: 353  DGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIG 407
              + +    +MA      GI Q L+ K+G FR  L GKRV+++ R+VISPDP L +N++G
Sbjct: 321  HSEISGIPLNMAPKKTTRGIVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLMINQVG 380

Query: 408  IPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIG 467
            +P   A  LTYPERV P N+ +++  + NG  +HPGA +   + S+       K  ++ G
Sbjct: 381  VPVRVAKILTYPERVNPANIRQMKQLVRNGPSMHPGANYVQQRGSSF------KKYLAYG 434

Query: 468  RKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 527
                 +R  + Q  K  D      +V RHL+D D+VL NRQP+LHK SIM H  +V + +
Sbjct: 435  -----NREKVAQELKCGD------IVERHLRDDDIVLFNRQPSLHKMSIMCHRAKV-QPQ 482

Query: 528  KTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQ 587
            +T R +   C+ YNADFDGDEMN+H PQ E +RAEA  ++   +  V P NG+ L +  Q
Sbjct: 483  RTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQ 542

Query: 588  DHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLP 647
            D I    LLT+K+ FL ++E  QL      +          P                 P
Sbjct: 543  DFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMRIQMPP-----------------P 585

Query: 648  AIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKG 707
            AIWKP  LWTGKQ+ + ++                  P D    R N     ++ +N  G
Sbjct: 586  AIWKPRRLWTGKQLFSLLMR-----------------PNDDSNVRLN---MVNKGRNYAG 625

Query: 708  KLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKA 767
             +                                      ++  + I  ++L+ G +DKA
Sbjct: 626  NMDLC----------------------------------ANDSWIHIRNSELMCGTMDKA 651

Query: 768  QFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     + + +   +G   A   +  L+R+ + F+Q  GF+ G+ D+          
Sbjct: 652  TMGSGTKQCIFYLLLRDFGEAFATKAMWRLARIASYFIQNRGFSFGISDVT--------- 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDG-AEIDPI--KLKSEIEKAMRGGGDA-AVAYFDMKMT 880
                  SE++   +H + + LE G A+ +    KLK+   +   G   A  +    ++  
Sbjct: 703  -----PSEKL---LHHKQILLERGYAKCNDYIEKLKAGTLQCQPGCTPAETLEAVMLREL 754

Query: 881  SQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKR 940
            S + +  + +   EL       PT  N   +M  SG+KGS +N  Q+ + +GQQ + GKR
Sbjct: 755  SGIREQAAKTCFAEL------HPT--NSALIMALSGSKGSNINISQMIACVGQQAISGKR 806

Query: 941  VPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRS 1000
            VP     + LP F      P A GF+ + F +GL P E++FH MAGREGLVDTAVKT+ +
Sbjct: 807  VPNGFENRALPHFDRHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAET 866

Query: 1001 GYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISK-------FDAL 1053
            GYLQR L+K LE L + YD +VR+A   +V   YG DG+D       +K       +D L
Sbjct: 867  GYLQRRLVKCLEDLVVHYDGTVRNAINEMVDTIYGGDGLDPVSMETRNKPVDLNHQYDNL 926

Query: 1054 AARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKF 1113
             A+     + +    D+     ++G  + ++  K     +A   + +++   LK+ A++ 
Sbjct: 927  RAQLPCVEQQQPLEADE-----ILGVAETLL--KLPEFAEARLDFKLDITAHLKNIAKRI 979

Query: 1114 AD---------KFLSNE---MAKQ---DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPS 1158
                       + L N+   ++++   +FL+ +  ++  ++++PG  VG  A+Q++GE  
Sbjct: 980  GQLQQQYGSKHRSLCNQIECLSREQLLEFLRRINDRYNRAVSEPGTAVGANAAQTIGERG 1039

Query: 1159 TQ 1160
            TQ
Sbjct: 1040 TQ 1041



 Score = 48.5 bits (114), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHH--FKASRREV 54
           C+TCGQ    C GHFG++DL +PV++   F     +L+ IC  C H   KA  R V
Sbjct: 67  CETCGQGLNECIGHFGYLDLALPVFHIGHFRSTINILQMICKTCAHVMLKAEDRAV 122


>gi|118431618|ref|NP_148215.2| DNA-directed RNA polymerase subunit A' [Aeropyrum pernix K1]
 gi|116062942|dbj|BAA80857.2| DNA-directed RNA polymerase subunit A [Aeropyrum pernix K1]
          Length = 891

 Score =  334 bits (856), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 268/830 (32%), Positives = 397/830 (47%), Gaps = 143/830 (17%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P  F ++K      L PS++++ +EK            S+++  G   +     + +  V
Sbjct: 169  PFHFYEKKPEGDVKLTPSEIRERLEKTG----------SEIEILGVHPERSRPEWMVATV 218

Query: 288  L-VPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYV-NQPDNAKVIVARWMN 343
            L VPP+  R PS   ++ +  E   T  L+++++ N  L N  V N P+   +I   WM 
Sbjct: 219  LIVPPLAVR-PSITLETGLRSEDDLTHALAEIVRQNEKLRNVIVTNAPET--LIEENWMV 275

Query: 344  LQQSVNVLFDGKNAAGQR------DMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
            LQ+ V    D +    +R           + Q L+ K+G  R  L GKRVNY+ R+VISP
Sbjct: 276  LQEMVAAYIDNELPGARRLTHRRKRYLKTLAQRLKGKDGRIRGNLSGKRVNYSARTVISP 335

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DPY+++NE+G+P   A  LT   RVTP+N+ + R  ++NG +  PGA      L   +  
Sbjct: 336  DPYISINEVGVPEEIAKTLTIAMRVTPYNLEEARRYVLNGPDKWPGA------LFVYKAS 389

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIM 517
              KK  +   +  +          K +++   G +V RHL +GD+VL NRQP+LH+ SIM
Sbjct: 390  ERKKYDLRFFKDYE----------KLAESLEPGDVVERHLINGDIVLFNRQPSLHRMSIM 439

Query: 518  AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
             H+VRV+ G KT R++   C  YNADFDGDEMN+H P+ E ++AEA  I+      + P 
Sbjct: 440  GHIVRVMPG-KTFRLNLLVCPPYNADFDGDEMNLHVPRLEEAQAEAREIMLVEKHILTPR 498

Query: 578  NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISR 637
             G P+    QD++  A LLT K     ++E  +LL  +G                     
Sbjct: 499  YGGPIIGGRQDYVSGAYLLTVKTRLFTKEEVERLLSVAGYKGD----------------- 541

Query: 638  SEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADK 697
                 LP  PAI KPEPLWTGKQ+ +                    LP+D          
Sbjct: 542  -----LP-EPAILKPEPLWTGKQLASIF------------------LPEDL--------- 568

Query: 698  QSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN 757
                  + KGK SKTN                        +   S E  L +  ++I   
Sbjct: 569  ------SFKGK-SKTNA----------------------GDLACSDELCLHDSYIVITNG 599

Query: 758  DLVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             L+ GV+DK          L+H +   YG++ A  LL +  R+F   L++ G T  + D 
Sbjct: 600  KLLEGVLDKKAIGAEEPNNLLHIIALEYGNSKARQLLDSFYRMFIRMLELRGLTISLHD- 658

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
            + L D+ ++    L    E   RV+    E   G  ++PI  +S  E         ++  
Sbjct: 659  IDLPDRAKQEIEEL--IREYKGRVYSIIEEYRKGT-LEPIPGRSLEE---------SLEI 706

Query: 875  FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
              M++  +L K       N L           N + +M  +GA+GS VN  Q+++ LGQQ
Sbjct: 707  KIMEVLDELRKRVQEVASNNL--------DPFNDVFVMARTGARGSDVNISQMAAMLGQQ 758

Query: 935  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
             + G+R+ R +  + L  F   D  P A GF+   F  GLRP E +FH  AGREGLVDTA
Sbjct: 759  AVRGRRIRRGLRNRVLAHFKENDIEPEAWGFVRSSFRKGLRPTEVFFHAAAGREGLVDTA 818

Query: 995  VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT 1044
            VKTS+SGY+QR LI  L+ + ++YD +VRD  G+++Q  YGEDGVD  +T
Sbjct: 819  VKTSQSGYMQRRLINALQDIVVTYDGTVRDLYGNLIQLKYGEDGVDPMKT 868



 Score = 46.2 bits (108), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C  CG  +  CPGHFG I+L  PV  P   + +Y +L+  C  C
Sbjct: 66  CPVCGNSREECPGHFGKIELARPVLIPHYTDYVYKILQATCRVC 109


>gi|238620364|ref|YP_002915190.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus M.16.4]
 gi|238381434|gb|ACR42522.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus M.16.4]
          Length = 880

 Score =  333 bits (855), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 268/831 (32%), Positives = 409/831 (49%), Gaps = 155/831 (18%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P  F +++      L PSD+++ +EK+ E++ E+  +     +  +          L V+
Sbjct: 161  PYNFYEERKEGVAKLTPSDIRERLEKVPESDVEILGYDPTTSRPEW--------MILTVL 212

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
             VPPI  R PS   +S +  E   T  L  +++ N  L  + ++      +I   W  LQ
Sbjct: 213  PVPPITIR-PSIMIESGIRAEDDLTHKLVDIVRINERLKES-IDAGAPQLIIEDLWDLLQ 270

Query: 346  QSVNVLFD--------GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
              V   FD         K+ +G R + + + Q L+ KEG FR  L GKRV+++ R+VISP
Sbjct: 271  YHVATYFDNEIPGLPPSKHRSG-RPLRT-LAQRLKGKEGRFRGNLSGKRVDFSSRTVISP 328

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DP ++++E+G+P   A  LT PER+TPWN+ KLR  +ING +  PGA + +         
Sbjct: 329  DPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIR-------- 380

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSI 516
            P+       GR++D      V+  K+  +    G +V RHL DGDVVL NRQP+LH+ S+
Sbjct: 381  PD-------GRRIDLR---YVKDRKELASTLAPGYVVERHLTDGDVVLFNRQPSLHRISM 430

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            MAH VRVLKG  T R++   C  YNADFDGDEMN+H PQ E + AEA  I+  +   + P
Sbjct: 431  MAHRVRVLKG-LTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITP 489

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
              G P+    QD+I  A LLT K T L ++E  Q+L   GV+              V I 
Sbjct: 490  RYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQIL---GVAD-------------VKID 533

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDF-FKTRFNA 695
              E       PAI  P   +TGKQ+++A                   LP+DF F  + N 
Sbjct: 534  LGE-------PAILAPREYYTGKQIVSAF------------------LPKDFNFHGQANV 568

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
                   KN+                                        +   +  ++ 
Sbjct: 569  SSGPRLCKNE----------------------------------------DCPHDSYVVI 588

Query: 756  KND-LVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
            KN  L+ GV DK    +     ++H + + Y       L+  L R+F  F+++ GFT  +
Sbjct: 589  KNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRL 648

Query: 812  DDLLILKDKERERKNHLHGSEEIGKRVHLEA---LELEDGAEIDPIKLKSEIEKAMRGGG 868
            +D+ +  D ++E  N +        R  +E    ++     E++PI  ++ +E+++    
Sbjct: 649  EDVSLGDDVKQEIYNEI-------DRAKVEVNNLIQKYKNGELEPIPGRT-LEESL---- 696

Query: 869  DAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQIS 928
                   +  +   L+K  S++   ++ S+  L P   N+  +M  +GA+GS +N  Q++
Sbjct: 697  -------ENYILDTLDKLRSTA--GDIASK-YLDPF--NFAYVMARTGARGSVLNITQMA 744

Query: 929  SHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGRE 988
            + LGQQ + G+R+ R    +TLP F P+D +P A GFI   F TGL+P E +FH   GRE
Sbjct: 745  AMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGRE 804

Query: 989  GLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            GLVDTAV+TS+SGY+QR LI  L  L+  YD +VR   G ++Q  YG+DGV
Sbjct: 805  GLVDTAVRTSQSGYMQRRLINALSDLRAEYDGTVRSLYGEVIQVAYGDDGV 855



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 37/75 (49%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG     CPGHFGHI+LV PV +      +Y  LK  C  C   K S  E+EK  R 
Sbjct: 58  CPTCGNTLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRI 117

Query: 61  LELIIKGDIIAAKSL 75
              I K    AA+ L
Sbjct: 118 YNAIKKRWPSAARRL 132


>gi|145592516|ref|YP_001154518.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum arsenaticum DSM
            13514]
 gi|145284284|gb|ABP51866.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum arsenaticum DSM
            13514]
          Length = 884

 Score =  333 bits (854), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 247/727 (33%), Positives = 354/727 (48%), Gaps = 157/727 (21%)

Query: 341  WMNLQQSVNVLFDGK-------NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRS 393
            W  LQ  V   FD +          G R +  GI Q L+ KEG FR  L GKRVN++ R+
Sbjct: 276  WDLLQYHVATYFDNELPGIPVAKHRGGRPL-KGIAQRLKGKEGRFRGSLSGKRVNFSART 334

Query: 394  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLST 453
            VISPDP++++NE+G+P   A  LT PE+VT WN+  LR+ +I G E  PGA + +     
Sbjct: 335  VISPDPHISINEVGVPTDIAKILTVPEKVTAWNIDVLREYVIRGPETWPGANYVVT---- 390

Query: 454  MRLPPNKK--MRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
               P  ++  +R    RK    R A             G +V RHL+DGD+VL NRQP+L
Sbjct: 391  ---PEGRRIDLRYVKDRKALAERLA------------PGWVVERHLRDGDIVLFNRQPSL 435

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            H+ S+M H+V+VL G +T R+H A C  YNADFDGDEMN+H PQ E +RAEA  ++   N
Sbjct: 436  HRVSMMGHLVKVLPG-RTFRLHLAVCPPYNADFDGDEMNLHVPQTEEARAEARLLMLVEN 494

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              + P  G  +    QD+I+ A LL+ K TFL + E   LL        G G        
Sbjct: 495  HIITPRYGGAIIGARQDYIIGAYLLSHKTTFLTKKEVAFLL--------GAG-------- 538

Query: 632  RVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKT 691
                 +SE++  P  PAI  P  LWTGKQ+I+                    LP+DF   
Sbjct: 539  -----KSEED--PPEPAILYPVELWTGKQIISHF------------------LPKDFNWV 573

Query: 692  RFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEK 751
            +  A K                                         K +       +E 
Sbjct: 574  QPTAFKS----------------------------------------KCQDAYTCYGDEW 593

Query: 752  LLIYKNDLVRGVIDK----AQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
            +++    L +GV+DK    A+  D  L H +   Y  + A   L +  RLF  +L + GF
Sbjct: 594  IIVLNGYLAKGVLDKKSIGAEQVD-SLWHRIARDYPPDVARRWLDSSLRLFLRYLDLRGF 652

Query: 808  TCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGG 867
            T  +D + I  +  RE        EE+ +    +AL+          K++  IE    G 
Sbjct: 653  TFAMDSVYIPTEAYRE-------VEEVIE----QALK----------KVEGLIEDFTSGR 691

Query: 868  GDAAVAY-----FDMKMTSQLNK--HTSSSVINELL---SEGLLKPTGKNWISLMTTSGA 917
             +A   +     F+ K+T  L++    ++ V+ + +   SEG L          M  +GA
Sbjct: 692  LEAMPGFTVEETFENKVTDILSRVREDAAQVVEKYIDKNSEGYL----------MAKTGA 741

Query: 918  KGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQ 977
            +GS VN  Q+ + LGQQ + G+R+ R    +TLP F   D    +GGF+   F  GL P 
Sbjct: 742  RGSLVNIVQMVATLGQQTIRGERIRRGFRSRTLPHFPVGDIGAFSGGFVKHCFRCGLTPV 801

Query: 978  EYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGED 1037
            EY+FH  AGR+GL+DTAV+T++SGY+QR LI  L+ + ++YD +VR     ++Q  YGED
Sbjct: 802  EYFFHAAAGRDGLIDTAVRTAQSGYMQRRLINALQDVYVAYDGTVRFGGSMLLQPLYGED 861

Query: 1038 GVDVHQT 1044
            GVDV ++
Sbjct: 862  GVDVSRS 868



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCGQ   +CPGHFGHI+LV PV +     ++Y +L+  C  C        E+ +   +
Sbjct: 67  CETCGQTHDVCPGHFGHIELVKPVVHVGFARVIYDILRTTCPNCGRIMLRDEEIARYRER 126

Query: 61  LELIIKGDIIAAKSL 75
           L  + K   + A++L
Sbjct: 127 LTRLSKRWRLLAQNL 141


>gi|15897171|ref|NP_341776.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus P2]
 gi|284174417|ref|ZP_06388386.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus 98/2]
 gi|384433684|ref|YP_005643042.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus 98/2]
 gi|17368575|sp|Q980R2.1|RPOA1_SULSO RecName: Full=DNA-directed RNA polymerase subunit A'
 gi|167744881|pdb|2PMZ|A Chain A, Archaeal Rna Polymerase From Sulfolobus Solfataricus
 gi|167744892|pdb|2PMZ|Q Chain Q, Archaeal Rna Polymerase From Sulfolobus Solfataricus
 gi|239782143|pdb|3HKZ|A Chain A, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
 gi|239782156|pdb|3HKZ|I Chain I, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
 gi|13813360|gb|AAK40566.1| DNA-directed RNA polymerase, subunit A' (rpoA1) [Sulfolobus
            solfataricus P2]
 gi|261601838|gb|ACX91441.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus 98/2]
          Length = 880

 Score =  333 bits (854), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 268/829 (32%), Positives = 410/829 (49%), Gaps = 151/829 (18%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P  F +++      L PSD+++ +EK+ +++ E+  +     +  +          L V+
Sbjct: 161  PYNFYEERKEGVAKLTPSDIRERLEKIPDSDVEILGYDPTTSRPEW--------MILTVL 212

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
             VPPI  R PS   +S +  E   T  L  +++ N  L  + ++      +I   W  LQ
Sbjct: 213  PVPPITIR-PSIMIESGIRAEDDLTHKLVDIVRINERLKES-IDAGAPQLIIEDLWDLLQ 270

Query: 346  QSVNVLFD--------GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
              V   FD         K+ +G R + + + Q L+ KEG FR  L GKRV+++ R+VISP
Sbjct: 271  YHVATYFDNEIPGLPPSKHRSG-RPLRT-LAQRLKGKEGRFRGNLSGKRVDFSSRTVISP 328

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DP ++++E+G+P   A  LT PER+TPWN+ KLR  +ING +  PGA + +         
Sbjct: 329  DPNISIDEVGVPEIIAKTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIR-------- 380

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSI 516
            P+       GR++D      V+  K+  +    G ++ RHL DGD+VL NRQP+LH+ S+
Sbjct: 381  PD-------GRRIDLR---YVKDRKELASTLAPGYIIERHLIDGDIVLFNRQPSLHRISM 430

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            MAH VRVLKG  T R++   C  YNADFDGDEMN+H PQ E + AEA  I+  +   + P
Sbjct: 431  MAHRVRVLKG-LTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITP 489

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
              G P+    QD+I  A LLT K T L ++E  Q+L   GV+              V I 
Sbjct: 490  RYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQIL---GVAD-------------VKID 533

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDF-FKTRFNA 695
              E       PAI  P   +TGKQVI+A                   LP+DF F  + N 
Sbjct: 534  LGE-------PAILAPREYYTGKQVISAF------------------LPKDFNFHGQANV 568

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
                   KN+                                        +   +  ++ 
Sbjct: 569  SSGPRLCKNE----------------------------------------DCPHDSYVVI 588

Query: 756  KND-LVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
            KN  L+ GV DK    +     ++H + + Y       L+  L R+F  F+++ GFT  +
Sbjct: 589  KNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRL 648

Query: 812  DDLLILKDKERERKNHLHGSEEIGKRVHLEAL-ELEDGAEIDPIKLKSEIEKAMRGGGDA 870
            +D+ +  D ++E  N +  +     +V ++ L +     E++PI  ++ +E+++      
Sbjct: 649  EDVSLGDDVKKEIYNEIDRA-----KVEVDNLIQKYKNGELEPIPGRT-LEESLEN---- 698

Query: 871  AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
                    +   L+K  S++   ++ S+  L P   N+  +M  +GA+GS +N  Q+++ 
Sbjct: 699  -------YILDTLDKLRSTA--GDIASK-YLDPF--NFAYVMARTGARGSVLNITQMAAM 746

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            LGQQ + G+R+ R    +TLP F P+D +P A GFI   F TGL+P E +FH   GREGL
Sbjct: 747  LGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGREGL 806

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            VDTAV+TS+SGY+QR LI  L  L+  YD +VR   G +VQ  YG+DGV
Sbjct: 807  VDTAVRTSQSGYMQRRLINALSDLRAEYDGTVRSLYGEVVQVAYGDDGV 855



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 38/75 (50%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG     CPGHFGHI+LV PV +  L   +Y  LK  C  C   K S  E+EK  R 
Sbjct: 58  CPTCGNTLGNCPGHFGHIELVRPVIHVGLVKHIYEFLKATCRRCGRVKISEDEIEKYSRI 117

Query: 61  LELIIKGDIIAAKSL 75
              I K    AA+ L
Sbjct: 118 YNAIKKRWPSAARRL 132


>gi|120561219|gb|ABM26995.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
          Length = 1018

 Score =  333 bits (853), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 252/833 (30%), Positives = 391/833 (46%), Gaps = 163/833 (19%)

Query: 225  GAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFL 284
            GA+P G  KQ      PL PS V  I++++ +          D++  G   +     + +
Sbjct: 126  GAMPEG--KQ------PLTPSQVHQILKRITD---------EDLEDMGLSAEFARPDWMI 168

Query: 285  GVVLVPPIKFRLPS--KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV-IVARW 341
              VL  P     PS    G S  E   T  L+ +L+AN+   N    + + A V ++  +
Sbjct: 169  ITVLPVPPPPVRPSIQMDGSSRGEDDLTHKLADILKANV---NVKRCETEGAPVHVIDEF 225

Query: 342  MNLQQSVNVLFDGKNAAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYACRS 393
              L Q     +   + AGQ        R + S I   L+ KEG  R  LMGKRV+++ R+
Sbjct: 226  EQLLQFHVATYMDNDIAGQPQALQKSGRPLKS-IRARLKGKEGRLRGNLMGKRVDFSART 284

Query: 394  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLST 453
            VI+ DP L+++E+G+P   A  LT+PE VTP+N+ ++++ + NG   HPGA + +     
Sbjct: 285  VITGDPNLSIDEVGVPRSIARNLTFPEMVTPYNIERMQELVRNGPNEHPGAKYVIR---- 340

Query: 454  MRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLH 512
                         G ++D     +    +  D   + G  V RHL DGDVV+ NRQP+LH
Sbjct: 341  -----------DTGERID-----LRYHKRAGDIPLQYGYKVERHLNDGDVVIFNRQPSLH 384

Query: 513  KPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQ 572
            K S+M H VRV+    T R++ +  S YNADFDGDEMN+H PQ E + AE   I     Q
Sbjct: 385  KMSMMGHKVRVMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETNAEIKEICMVPKQ 443

Query: 573  YVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQR 632
             + P +  P+  ++QD +      TK+D+F+++     +L         +  + G     
Sbjct: 444  IISPQSNKPVMGIVQDTLCGIRKFTKRDSFVDKALVMNILM-------WVADWDG----- 491

Query: 633  VLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 692
                     V+P  PAI KP+PLWTGKQ++T +                  +P++     
Sbjct: 492  ---------VIPT-PAILKPQPLWTGKQLVTMI------------------VPKNINCIT 523

Query: 693  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL 752
            +++    D K +                          PG+ K                +
Sbjct: 524  YHSAHPDDEKSDI------------------------SPGDTK----------------V 543

Query: 753  LIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
            ++   +L+ G++ K     ++ G VH     +G   A    S    +   +L  HGF+ G
Sbjct: 544  VVENGELISGIVCKKTVGASNGGWVHVAMNEHGPEVAKRFFSGAQAVVNYWLLQHGFSIG 603

Query: 811  VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
            + D +       + K   H +E I                +  I L ++ +      G  
Sbjct: 604  IGDTIA------DGKTTEHITETINSAKQ----------RVSEIILSAQQDTLECAPGMT 647

Query: 871  AVAYFDMKMTSQLNK---HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQI 927
                F+ K+  +LN+   H+  S    L  E        N +  M  SG+KGS +N  Q+
Sbjct: 648  IRETFENKVNRELNRARDHSGRSAEKSLKEE--------NNVKQMVVSGSKGSFINISQM 699

Query: 928  SSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGR 987
            S+ +GQQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL PQE+YFH M GR
Sbjct: 700  SACVGQQNVEGKRIPFGFKFRTLPHFSKDDYGPESRGFVENSYLRGLTPQEFYFHAMGGR 759

Query: 988  EGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            EGL+DTAVKT+ +GY+QR L+K LE + + YD +VR++ G+I+QFCYGEDG+D
Sbjct: 760  EGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGNIIQFCYGEDGMD 812


>gi|120561203|gb|ABM26987.1| RNA polymerase II largest subunit, partial [Taphrina deformans]
          Length = 1001

 Score =  332 bits (852), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 242/792 (30%), Positives = 373/792 (47%), Gaps = 142/792 (17%)

Query: 267  DMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN 325
            D+ + G  +      + +  VL VPP   R   + G        T  L+ +++AN   AN
Sbjct: 142  DLVRMGLSENYARPDWMIITVLPVPPPTVRPSVEQGGMKSHDDLTYKLADIIKAN---AN 198

Query: 326  AYVNQPDNAKV-IVARWMNLQQSVNVLFDGKNAAGQ--------RDMASGICQLLEKKEG 376
                + + A   ++  + +L Q     +   + AGQ        R + S I   L+ KEG
Sbjct: 199  VKKGEVEGAPAHVIKEFEDLLQYHVATYMDNDIAGQPKALQKSGRAIKS-IRARLKGKEG 257

Query: 377  LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
              R  LMGKRV+++ R+VI+ DP L+++E+G+P   A  LTYPERVTP+N+ KL+  + N
Sbjct: 258  RLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPERVTPFNIHKLQQLVRN 317

Query: 437  GAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
            G + HPGA + L                  G ++D       +   D+  ++ G  V RH
Sbjct: 318  GPDEHPGAKYILR---------------DTGERIDLRYN---KNAGDTPLQY-GWTVERH 358

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            LQ+GDVV+ NRQP+LHK S+M H VRV+    T R++ +  S YNADFDGDEMN+H PQ 
Sbjct: 359  LQNGDVVIFNRQPSLHKMSMMGHRVRVMP-YSTFRLNLSVTSPYNADFDGDEMNLHVPQS 417

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
            E +RAE   I     Q + P    P   ++QD +      T +DTF+ +     +L    
Sbjct: 418  EETRAEITEICMVPRQILAPQANKPCMGIVQDALCGIRKFTIRDTFMAKSHVMNILMWV- 476

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                        PG   ++           PAI KP+ LWTGKQ+++ V           
Sbjct: 477  ------------PGWNGIVPP---------PAILKPQQLWTGKQILSMV----------- 504

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                   +P+    +R N DKQ     ND G                             
Sbjct: 505  -------IPKGINHSR-NDDKQGLDNPNDVG----------------------------- 527

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSAL 794
                           ++I   +++ GV++K        GL+H + +  G        +A 
Sbjct: 528  ---------------MMIEDGEILYGVVNKKTVGSSQGGLIHIIMKEKGWEACRDFFTAT 572

Query: 795  SRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
              +   +   +GF+ G+ D +  +    E  N      EI K   L+   +   A+++  
Sbjct: 573  QMVVNYWFLHNGFSIGIGDTIADRQTMEEITN------EIAK-AKLKVQGIVSDAQLN-- 623

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
            KLK E    +R   +A V+         + K+  SS+            + +N +  M  
Sbjct: 624  KLKQEPGMTLRESFEAGVSQVLNGARDTVGKNAESSL------------SKQNAVKQMVI 671

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            +G+KGS +N  Q+S+ +GQQ +EGKR+P     +TLP F   D++P + GF+ + +L GL
Sbjct: 672  AGSKGSFINISQMSACVGQQMVEGKRIPYGFKFRTLPHFTKDDYSPESRGFVENSYLRGL 731

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
             PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD +VR++ G I+ F Y
Sbjct: 732  TPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVGVKYDGTVRNSLGDIINFVY 791

Query: 1035 GEDGVDVHQTSF 1046
            GEDG+D     +
Sbjct: 792  GEDGLDAASVEY 803


>gi|321259651|ref|XP_003194546.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus gattii
            WM276]
 gi|317461017|gb|ADV22759.1| DNA-directed RNA polymerase II largest subunit, putative
            [Cryptococcus gattii WM276]
          Length = 1786

 Score =  332 bits (852), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 250/810 (30%), Positives = 388/810 (47%), Gaps = 150/810 (18%)

Query: 244  PSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFR--LPSKGG 301
            P +V +I++K+   +  +    +D  +  +          L V+ VPP   R  +   GG
Sbjct: 219  PGEVYNILKKITPEDLHIMGLNADYARPDW--------MILTVLPVPPAAVRPSIAVDGG 270

Query: 302  DSVMEHPQTVLLSKVLQAN--IYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
                E   T  LS++++ N  +    A    P    V+  ++  LQ  V    D   A  
Sbjct: 271  AMRSEDDLTYKLSQIIKFNGVVRRMEAEGVPP---SVVNEQFDLLQYHVCTYMDNDIAGL 327

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             RD   G      I   L+ KEG  R  LMGKRV+++ R+VI+ DP L ++++G+P   A
Sbjct: 328  PRDQQKGGRAIKAIRARLKGKEGRMRGNLMGKRVDFSARTVITGDPNLQLDQVGVPKSIA 387

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTS 473
            + LTYPERVTP+N+V L+  + NG   +PGA +Y+                  G ++D  
Sbjct: 388  MTLTYPERVTPYNIVYLQTLVNNGPATYPGARYYVK---------------DTGERVDLK 432

Query: 474  RGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH 533
                 + G+    +F G +V RHL+DGD VL NRQP+LHK S+M+H V+++    T R++
Sbjct: 433  ---YRKSGEPISLQF-GWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMN-YSTFRLN 487

Query: 534  YANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSA 593
             +  S YNADFDGDEMN+H PQ E +RAE   I     Q V P    P+  ++QD +   
Sbjct: 488  LSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGI 547

Query: 594  ALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPE 653
               T +D FL   ++ Q+                   Q +L+   E +     PAI+KP+
Sbjct: 548  RKFTLRDNFL---DWLQV-------------------QHILLWLPEWDGSIPPPAIFKPK 585

Query: 654  PLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTN 713
            P+WTGKQ+++                    +P+    T  N +K S     D+  L +  
Sbjct: 586  PMWTGKQLLSMT------------------IPKGINITYKNNEKPSPIDVTDENVLIENG 627

Query: 714  KMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG 773
                       E+V G                        I KN         A  A+ G
Sbjct: 628  -----------ELVHGT-----------------------IVKN--------MAGSANNG 645

Query: 774  LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEE 833
            LVH +    G   A    SA+ R+   +L  +GF+ G+ D ++ K       N +  ++E
Sbjct: 646  LVHVIFRELGHVAARDFFSAVQRVVNYWLLHYGFSVGIGDTIVDKATMAGITNRMVEAKE 705

Query: 834  IGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKH---TSSS 890
              +++  EA         +  ++K +    +R   +A++A       ++LNK    T  +
Sbjct: 706  AVQKLVQEA---------EANRMKPKPGMTIRETLEASIA-------AELNKARDWTGKT 749

Query: 891  VINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTL 950
              + L ++        N +  M  SGAKGS +N  Q+S  +GQQ +EGKR+      ++L
Sbjct: 750  TQDNLKAD--------NNVKQMVVSGAKGSFINISQMSGVVGQQFVEGKRIAFGFRHRSL 801

Query: 951  PSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1010
            P F   D+ P + GF+ + +L GL PQE++FH M GREGL+DTAVKT+ +GY+QR L+K 
Sbjct: 802  PHFSKDDYGPESRGFVENSYLRGLTPQEFWFHAMGGREGLIDTAVKTAETGYIQRRLVKA 861

Query: 1011 LECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            +E LK++YD +VR++   +VQF YGEDG+D
Sbjct: 862  MEDLKVAYDGTVRNSVNEVVQFLYGEDGMD 891



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 1/73 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            V+  F  ++    E VG LA+QS+GEP+TQMTLNTFH AG    +VT G+PRL+EI+ +A
Sbjct: 1065 VEQIFNKAVVNAAEMVGTLAAQSIGEPATQMTLNTFHYAGVASKSVTGGVPRLKEIINVA 1124

Query: 1191 SKDIKTPVITCPL 1203
              +I+TP +   L
Sbjct: 1125 V-NIRTPALNVYL 1136



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE--VEKCV 58
           C+TC +    CPGHFGHI+L  PV++      +  +L+ +C+ C   K   R+  V   V
Sbjct: 67  CQTCLEGMSECPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMRDPMVANAV 126

Query: 59  RKLE 62
           R+++
Sbjct: 127 RRIK 130


>gi|83320454|gb|ABC02854.1| RNA polymerase II largest subunit, partial [Spiromyces aspiralis]
          Length = 1022

 Score =  332 bits (852), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 246/777 (31%), Positives = 375/777 (48%), Gaps = 149/777 (19%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKV-IV 338
              + V+ VPP+  R PS   D+V   E   T  L+ +L+AN  + +  V   D A + I+
Sbjct: 176  MIMTVMPVPPMAVR-PSIQMDAVRQSEDDLTYKLNDILKANARVRSCEV---DGAPMHII 231

Query: 339  ARWMNLQQSVNVLFDGKNAAG--QRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYAC 391
              + +L Q   V F     +G  Q    SG     I   L+ KEG  R  LMGKRV+++ 
Sbjct: 232  EDFESLLQFHVVTFMNNEISGLPQALQKSGRPIRSIRARLKGKEGRLRGNLMGKRVDFSA 291

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL-DK 450
            R+VI+ DP ++++E+G+P   A  LTYPE VTP+N+ KL++ + NG   HPGA + + D 
Sbjct: 292  RTVITGDPNISIDEVGVPRSIARNLTYPEVVTPYNIEKLQELVRNGPTEHPGAKYVIRDT 351

Query: 451  LSTMRLPPNKK---MRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNR 507
               + L  NK+   + ++IG +++                       RH+ DGDVV+ NR
Sbjct: 352  GERIDLRYNKRGGDIPLAIGYRVE-----------------------RHIMDGDVVIFNR 388

Query: 508  QPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIV 567
            QP+LHK S+M H VRVL    T R++ +  S YNADFDGDEMN+H PQ E SRAE   I 
Sbjct: 389  QPSLHKMSMMGHRVRVLP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSEESRAEIKEIC 447

Query: 568  NANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTG 627
                Q + P    P+  ++QD + +    T++D F+ +D    +L         +  + G
Sbjct: 448  MVPRQIISPQANSPVMGIVQDTLCAIRKFTRRDNFMAKDLVMNILMH-------IPDWDG 500

Query: 628  KPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQD 687
                           +P  PAI KP+PLWTGKQ+ +                    +P+ 
Sbjct: 501  --------------TVP-TPAIIKPKPLWTGKQIYSLA------------------IPKG 527

Query: 688  FFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKEL 747
                RF++                    H D      E     PG+ +            
Sbjct: 528  INCLRFHS-------------------THPD-----NETTFVSPGDTR------------ 551

Query: 748  SEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH 805
                ++I   +L+ G+I K     ++  LVH V    G   A    +   R+   +   +
Sbjct: 552  ----VIIEDGELLAGIICKKTVDASEGSLVHVVMAERGPEVAKKFFNTTQRIVDYWFLQN 607

Query: 806  GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMR 865
            GF+ G+ D +   D      N +  + +   ++ ++A   ED  E  P            
Sbjct: 608  GFSIGIGDTIADDDTMLNVSNIIKEAYDRVDQIIIDA--QEDRMEAMP------------ 653

Query: 866  GGGDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
              G      F+ ++  +LN  +  +  ++ + L E        N +  M  +G+KGS +N
Sbjct: 654  --GMTYRESFENRVNKELNRARDQAGKLVQQRLKES-------NNVRQMVVAGSKGSYIN 704

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              Q+++ +GQQ +EGKR+P     +TLP F   D++P + GF+ + +L GL PQE++FH 
Sbjct: 705  VSQMTAAVGQQNVEGKRIPFGFRYRTLPHFAKDDYSPASKGFVENSYLRGLTPQEFFFHA 764

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            M GREGL+DTAVKT+ +GY+QR LIK LE L + YD SVR++ G IVQF YGEDG+D
Sbjct: 765  MGGREGLIDTAVKTAETGYIQRRLIKALEDLMVQYDGSVRNSLGQIVQFTYGEDGMD 821


>gi|367041111|ref|XP_003650936.1| hypothetical protein THITE_2110899 [Thielavia terrestris NRRL 8126]
 gi|346998197|gb|AEO64600.1| hypothetical protein THITE_2110899 [Thielavia terrestris NRRL 8126]
          Length = 1547

 Score =  332 bits (851), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 242/787 (30%), Positives = 381/787 (48%), Gaps = 123/787 (15%)

Query: 266  SDMQQQGFGKKAGH-SIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA 324
            SD +  G     G   +F    V  PPI  R      ++  E   T  LS+++    +L 
Sbjct: 248  SDCEFLGLDPAEGRPEMFLWQYVPAPPICIRPSVAQENASNEDDITSKLSEIILYAGHLR 307

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVNVLFD----GKNAAGQRDMASGICQLLEKKEGLFRQ 380
             + + +     VI+ +W  LQ  V +  +    G    G      G CQ L+ K+G FR 
Sbjct: 308  ES-MKKGVALPVIMEQWEFLQLQVGMYVNSDVPGLYQPGFGKPIRGFCQRLKGKQGRFRG 366

Query: 381  KLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEI 440
             L GKRV+++ R+VISPDP L++ ++ +P   A  LTYPERV   N+ KLR+ +ING  I
Sbjct: 367  NLSGKRVDFSGRTVISPDPNLSIEQVAVPQLVAKNLTYPERVNHANIEKLRERVINGPHI 426

Query: 441  HPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDG 500
             PGA   + K  +       K  + IG++    R A        DN   G +V RHL+D 
Sbjct: 427  WPGAQGIIKKDGS-------KYNLKIGKESLRERHA--------DNLEFGDVVERHLEDD 471

Query: 501  DVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSR 560
            D+VL NRQP+LHK SIM+H+V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +R
Sbjct: 472  DIVLFNRQPSLHKLSIMSHLVKV-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEAR 530

Query: 561  AEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSS 620
            AEA N++   +  + P NG+P+ +  QD I +A LL+ KD F +R  F  +         
Sbjct: 531  AEAINLMGVKHNLITPKNGEPIIAATQDFITAAFLLSSKDRFFDRTTFTYIC-------- 582

Query: 621  GLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVER 680
                       ++L+  +  E+ P  PAI KP  LWTGKQ+   ++      RP      
Sbjct: 583  ----------TQMLLGDTYLELPP--PAIIKPRALWTGKQIFNVMM------RP------ 618

Query: 681  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
                                    +K      N   K+K+ +KK             +  
Sbjct: 619  ------------------------NKESPVLVNLDAKNKAFQKK-------------QDG 641

Query: 741  KSKEKELSEEKLLIYKNDLVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSRL 797
            +  + ++ +  L++  ++++ G +DK+         + + +   +G   A   ++ L++L
Sbjct: 642  EIPDMDIDDAFLVVRNSEVMCGRMDKSTVGGGKKNSVFYVILRDFGPEYAAAAMNRLAKL 701

Query: 798  FTVFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
                L + GF+ GV D+     +   K    ++     +++ +      LE   G     
Sbjct: 702  SARTLTLRGFSIGVGDVWPSDSLTAHKASLVEDAYKKCDDLIETYRQGKLEKAPGC---- 757

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
              L+  +E  + G            + S++ +   +  ++ L        +  N   +M 
Sbjct: 758  -NLEETLENIISG------------ILSKVRQQAGNYCVDNL--------SKNNAPLIMA 796

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SG+KGS++N  Q+ + +GQQ + GKRVP     ++LP FH     P + GF+ + F TG
Sbjct: 797  KSGSKGSEINVAQMVACVGQQIISGKRVPDGFQDRSLPHFHKNARQPPSKGFVRNSFYTG 856

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            L P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR ++G IVQF 
Sbjct: 857  LVPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDDTVRTSEGGIVQFQ 916

Query: 1034 YGEDGVD 1040
            YG D +D
Sbjct: 917  YGADRLD 923



 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 7/137 (5%)

Query: 1069 DKGSHTFVMGRN-QEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLS-NEMAKQD 1126
            + G H     R+  E + K    ++D  +    E  DA +  A+   D+    +E   + 
Sbjct: 1065 ETGMHALGEPRDPSEYVLKDLRRKVDGED----EFGDAARAKAQAHVDRVAKVSERTLRT 1120

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            F+++  HK+  +  +PG  VG + +QS+GEP TQMTL TFH AG   M++T G+PR++EI
Sbjct: 1121 FIQMCLHKYRRARVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEI 1180

Query: 1187 LTIASKDIKTPVITCPL 1203
            +  ASK I TPVITC L
Sbjct: 1181 IN-ASKLISTPVITCKL 1196


>gi|329132887|gb|AEB78334.1| RNA polymerase II largest subunit [Percolomonas cosmopolitus]
          Length = 1028

 Score =  332 bits (851), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 222/680 (32%), Positives = 352/680 (51%), Gaps = 124/680 (18%)

Query: 367  ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
            I   L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  +T+PERVT +N
Sbjct: 244  ISSRLKGKEGRLRNNLMGKRVDFSARTVITPDPNLEIDQVGVPISIASNMTFPERVTLYN 303

Query: 427  VVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN 486
            + +L++ + NG+E +PGA   + K  T           S+  +L +     +QPG     
Sbjct: 304  MERLKEKVENGSE-YPGAKFIIHKDGT-----------SVDVELASDEYKQLQPGY---- 347

Query: 487  EFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDG 546
                 +V RH++D D++L NRQPTLHK S+M H V+VL    T R++ +  S YNADFDG
Sbjct: 348  -----IVERHVEDDDLILFNRQPTLHKMSMMGHRVKVLP-YSTFRLNVSVTSPYNADFDG 401

Query: 547  DEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRD 606
            DEMN+H PQ   ++AE   ++  +   V      P+ +++QD ++ + L+TK+D FL +D
Sbjct: 402  DEMNLHLPQSLGAKAELQEMMMVSKNIVSTQGNAPVIAIVQDALLGSVLMTKRDVFLEKD 461

Query: 607  ---EFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVIT 663
                 C  L  +         F G+  Q               P I KP+ LW+GKQ+ +
Sbjct: 462  IMMNCCMRLKEN---------FNGELPQ---------------PCILKPKQLWSGKQLFS 497

Query: 664  AVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKK 723
                         +V +G ++  + F+    A++  D KK                    
Sbjct: 498  -------------LVLKGCEV--NLFR---EANQYDDVKK-------------------- 519

Query: 724  KEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQEL 781
               + GK  +E              + K++I + +L+ GV DK      G  L+HT+   
Sbjct: 520  ---IMGKEFDEDICP---------MDTKVVISRGELISGVADKRTLGKGGGSLIHTIFNE 567

Query: 782  YGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGS-EEIGKRVHL 840
            Y    A   L+ L  +   ++  HG++ GV+D +  ++   + +  L  + EE+ K +  
Sbjct: 568  YSFIEASNFLNTLQWVVNYWMLQHGYSIGVEDTIADENTADQVQQTLSKAHEEVSKYIK- 626

Query: 841  EALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGL 900
               E ++G      KLKS+   +++   +AAV        S   K+++SS+         
Sbjct: 627  ---EAQEG------KLKSKPGMSLQESFEAAVNKTLNDSMSSAGKNSASSL--------- 668

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
               + +N I  M   G+KGS  N  QI + +GQQ +EGKR+      +TLP F   D  P
Sbjct: 669  ---SKRNRIKTMVVGGSKGSNTNISQIIACVGQQNIEGKRITFGFRKRTLPHFEQNDHRP 725

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
             + GF+ + +L GL PQE++FH M GREGL+DTAVKT+++GY+QR LIK++E  ++ YD 
Sbjct: 726  ISRGFVQNSYLRGLLPQEFFFHTMGGREGLIDTAVKTAKTGYIQRRLIKSMEDFQVKYDG 785

Query: 1021 SVRDADGSIVQFCYGEDGVD 1040
            +VRD+ G+I+QF YGEDG+D
Sbjct: 786  TVRDSAGNILQFLYGEDGMD 805



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 32/45 (71%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMN 1175
            ++  F  +  QPGE VG LA+QS+GEP+TQMTLNTFH AG    N
Sbjct: 984  IETTFKRAFVQPGEMVGALAAQSIGEPATQMTLNTFHFAGVSAKN 1028


>gi|284998388|ref|YP_003420156.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
            L.D.8.5]
 gi|284446284|gb|ADB87786.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
            L.D.8.5]
          Length = 880

 Score =  332 bits (851), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 267/831 (32%), Positives = 408/831 (49%), Gaps = 155/831 (18%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P  F +++      L PSD+++ +EK+ E++ E+  +     +  +          L V+
Sbjct: 161  PYNFYEERKEGVAKLTPSDIRERLEKVPESDVEILGYDPTTSRPEW--------MILTVL 212

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
             VPPI  R PS   +S +  E   T  L  +++ N  L  + ++      +I   W  LQ
Sbjct: 213  PVPPITIR-PSIMIESGIRAEDDLTHKLVDIVRINERLKES-IDAGAPQLIIEDLWDLLQ 270

Query: 346  QSVNVLFD--------GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
              V   FD         K+ +G R + + + Q L+ KEG FR  L GKRV+++ R+VISP
Sbjct: 271  YHVATYFDNEIPGLPPSKHRSG-RPLRT-LAQRLKGKEGRFRGNLSGKRVDFSSRTVISP 328

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DP ++++E+G+P   A  LT PER+TPWN+ KLR  +ING +  PGA + +         
Sbjct: 329  DPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIR-------- 380

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSI 516
            P+       GR++D      V+  K+  +    G +V RHL DGDVVL NRQP+LH+ S+
Sbjct: 381  PD-------GRRIDLR---YVKDRKELASTLAPGYVVERHLTDGDVVLFNRQPSLHRISM 430

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            MAH VRVLKG  T R++   C  YNADFDGDEMN+H PQ E + AEA  I+  +   + P
Sbjct: 431  MAHRVRVLKG-LTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITP 489

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
              G P+    QD+I  A LLT K T L ++E  Q+L   GV+              V I 
Sbjct: 490  RYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQIL---GVAD-------------VKID 533

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDF-FKTRFNA 695
              E       PAI  P   +TGKQ+++A                   LP+DF F  + N 
Sbjct: 534  LGE-------PAILAPREYYTGKQIVSAF------------------LPKDFNFHGQANV 568

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
                   KN+                                        +   +  ++ 
Sbjct: 569  SSGPRLCKNE----------------------------------------DCPHDSYVVI 588

Query: 756  KND-LVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
            KN  L+ GV DK    +     ++H + + Y       L+  L R+F  F+++ GFT  +
Sbjct: 589  KNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRL 648

Query: 812  DDLLILKDKERERKNHLHGSEEIGKRVHLEA---LELEDGAEIDPIKLKSEIEKAMRGGG 868
            +D+ +  D ++E  N +        R  +E    ++     E++PI  ++ +E+++    
Sbjct: 649  EDVSLGDDVKKEIYNEI-------DRAKVEVNNLIQKYKNGELEPIPGRT-LEESL---- 696

Query: 869  DAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQIS 928
                   +  +   L+K  S++   ++ S+  L P   N+  +M  +GA+GS +N  Q++
Sbjct: 697  -------ENYILDTLDKLRSTA--GDIASK-YLDPF--NFAYVMARTGARGSVLNITQMA 744

Query: 929  SHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGRE 988
            + LGQQ + G+R+ R    +TLP F P+D +P A GFI   F TGL+P E +FH   GRE
Sbjct: 745  AMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGRE 804

Query: 989  GLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            GLVDTAV+TS+SGY+QR LI  L  L+  YD +VR     ++Q  YG+DGV
Sbjct: 805  GLVDTAVRTSQSGYMQRRLINALSDLRAEYDGTVRSLYSEVIQVAYGDDGV 855



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 37/75 (49%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG     CPGHFGHI+LV PV +      +Y  LK  C  C   K S  E+EK  R 
Sbjct: 58  CPTCGNTLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRI 117

Query: 61  LELIIKGDIIAAKSL 75
              I K    AAK L
Sbjct: 118 YNAIKKRWPSAAKRL 132


>gi|305663642|ref|YP_003859930.1| DNA-directed RNA polymerase, subunit A' [Ignisphaera aggregans DSM
            17230]
 gi|304378211|gb|ADM28050.1| DNA-directed RNA polymerase, subunit A' [Ignisphaera aggregans DSM
            17230]
          Length = 884

 Score =  332 bits (851), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 238/720 (33%), Positives = 347/720 (48%), Gaps = 149/720 (20%)

Query: 341  WMNLQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSV 394
            W  LQ  V    D    G   A  R       + Q L+ KEG FR  L GKRV+Y+ R+V
Sbjct: 270  WELLQYHVTTYLDNEVPGLPPAKHRSGRPLKTLAQRLKGKEGRFRGNLSGKRVDYSARTV 329

Query: 395  ISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTM 454
            ISP+PYL++NE+G+P   A  LT PE+VT WN+ ++R  +ING    PGA + +      
Sbjct: 330  ISPEPYLSINEVGVPIDVAKILTVPEKVTEWNIEEMRKLVINGPNRWPGANYIIT----- 384

Query: 455  RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE----GKMVYRHLQDGDVVLVNRQPT 510
               P+       GR++D      ++  KD  +  E    G +V RH++DGD+ + NRQP+
Sbjct: 385  ---PD-------GRRID------LRYVKDRKSVAESLAPGYIVERHVRDGDIAIFNRQPS 428

Query: 511  LHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNAN 570
            LH+ S+M H+++VL G KT R+H A C  YNADFDGDEMN+H PQ E +RAE   ++   
Sbjct: 429  LHRMSMMGHIIKVLPG-KTFRLHLAVCPPYNADFDGDEMNLHIPQTEDARAETRLLLKVQ 487

Query: 571  NQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPG 630
            N  + P  G  +   IQD+I  A +LT K T L +++   LL ++GV             
Sbjct: 488  NHILTPRYGGIIIGAIQDYISGAYILTIKTTLLKKEDVIDLLSAAGVVKE---------- 537

Query: 631  QRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
                        LP  PAI  P+ LWTGKQ+I+                    LP+DF  
Sbjct: 538  ------------LPE-PAILSPKRLWTGKQIISMF------------------LPEDF-- 564

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
                         N  GK + +       SG  K        E+ E            + 
Sbjct: 565  -------------NYHGKANIS-------SGPLK-------CEDIEC---------FWDS 588

Query: 751  KLLIYKNDLVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             +++ K  L+ GV+DK          L++ + + YG       +  + R+F   L+  GF
Sbjct: 589  YVVVRKGKLLMGVLDKKTIGAEQQDSLLYWLAKEYGVEYVALFMDHVFRMFIRVLEKRGF 648

Query: 808  TCGVDDLLILKDKERE----RKNHLHGSEEIGKRVHLEALELEDGAEID---PIKLKSEI 860
            T  +DD+ I ++  +E     K      EE+ K+     LE+  G  ++    IK+   +
Sbjct: 649  TLRLDDVAIDENTRKEILEIIKEAFSKVEELVKQYVEGKLEVVPGRSLEESLEIKILEIL 708

Query: 861  EKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGS 920
             +A    G+ AV   D                          P    +I  M  +GA+G+
Sbjct: 709  AEARDKAGEVAVNRLD--------------------------PFNNAFI--MARTGARGN 740

Query: 921  KVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYY 980
             +N  Q+S+ LGQ  + G+R+ R   G+ + S+   D  P A GF+++ F +GL P E +
Sbjct: 741  VLNLTQMSATLGQMTVRGERIWRGYMGRPISSYGQNDLGPLARGFVVNSFYSGLSPTEMF 800

Query: 981  FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             H   GREGLVDTAV+TS+SGY+QR LI  L+ L + YD +VRD+  SI+QF YGEDG D
Sbjct: 801  MHAAGGREGLVDTAVRTSQSGYMQRRLINALQDLYVEYDGTVRDSTNSIIQFVYGEDGAD 860



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 31/56 (55%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEK 56
           C  CG     CPGHFGHI+L +PV N L    +Y LL+  C  C   K S  E+EK
Sbjct: 60  CPICGNTMKACPGHFGHIELALPVINVLYVKHIYDLLRATCANCGRIKVSPSEIEK 115


>gi|413917378|gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
          Length = 1850

 Score =  332 bits (851), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 234/727 (32%), Positives = 346/727 (47%), Gaps = 148/727 (20%)

Query: 334  AKVIVARWMNLQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRV 387
            A +I      LQ  +   FD    G+  A QR       IC  L+ KEG  R  LMGKRV
Sbjct: 295  AHIITEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 354

Query: 388  NYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY 447
            +++ R+VI+PDP + ++E+G+P   AL LTYPE VTP+N+ +L++ +  G   HP     
Sbjct: 355  DFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGP--HP----- 407

Query: 448  LDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVN 506
                     PP K     I R+ D  R  +    K SD   E G  V RHL DGD VL N
Sbjct: 408  ---------PPGKTGAKYIIRE-DGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFN 457

Query: 507  RQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNI 566
            RQP+LHK SIM H ++++    T R++ +  S YNADFDGDEMN+H PQ   +RAE   +
Sbjct: 458  RQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLEL 516

Query: 567  VNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFT 626
            +      V P +  P+  ++QD ++    +TK+DT + +D F  +L            F 
Sbjct: 517  MMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILM-------WWQDFD 569

Query: 627  GKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQ 686
            GK              +P  P I KP P+WTGKQV   +                  +P+
Sbjct: 570  GK--------------IP-APTILKPRPIWTGKQVFNLI------------------IPK 596

Query: 687  DFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKE 746
                 RF+A    +    +KG ++  + M +                             
Sbjct: 597  QINLIRFSAWHSEE----EKGFITPGDTMVR----------------------------- 623

Query: 747  LSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
                   I K +L+ G + K         L+H + E  G + A   L     L   +L  
Sbjct: 624  -------IEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 676

Query: 805  HGFTCGVDDLL-------ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLK 857
            +GF+ G+ D +        + D   + KN +   +E+ K+ H + LE E G  +      
Sbjct: 677  NGFSIGIGDTIADASTMETINDTISKAKNAV---KELIKKAHEKQLEAEPGRTM------ 727

Query: 858  SEIEKAMRGGGDAAVAYFDMKMTSQLNK---HTSSSVINELLSEGLLKPTGKNWISLMTT 914
                          +  F+ ++   LNK      SS  N L        +  N +  M T
Sbjct: 728  --------------MESFENRVNQVLNKARDDAGSSAQNSL--------SESNNLKAMVT 765

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            +G+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL
Sbjct: 766  AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 825

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
             PQE++FH M GREGL+DTAVKTS +GY+QR L+K +E + + YD +VR++ G ++QF Y
Sbjct: 826  TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 885

Query: 1035 GEDGVDV 1041
            GEDG+D 
Sbjct: 886  GEDGMDA 892



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 56/73 (76%), Gaps = 1/73 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F+ SL  PGE +G +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ +A
Sbjct: 1067 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1126

Query: 1191 SKDIKTPVITCPL 1203
             K IKTP ++  L
Sbjct: 1127 KK-IKTPSLSVYL 1138



 Score = 47.4 bits (111), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVE 55
           C+TC      CPGHFGH++L  P+++      + ++++ +CF C    A   E +
Sbjct: 66  CETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETK 120


>gi|32398906|emb|CAD98371.1| DNA-directed RNA polymerase II/III subunit, probable [Cryptosporidium
            parvum]
          Length = 1907

 Score =  332 bits (851), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 242/775 (31%), Positives = 375/775 (48%), Gaps = 144/775 (18%)

Query: 289  VPPIKFRLPSKGGDS-VMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQS 347
            VPP   R     G+S   E   TV+LS++   N  +  + +        ++  W  LQ  
Sbjct: 287  VPPNCIRPSVTMGESGSNEDDLTVILSEITDLN-NIIKSQMKSGFQTFQLLGNWEFLQLQ 345

Query: 348  VNVLFDGKNAAGQRDMAS--------GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDP 399
               L +       + +AS        G+CQ L+ KEG FR  L GKRV+++ R+VISPDP
Sbjct: 346  CTRLINADAPGVNQLLASKNIPKAGRGVCQRLKGKEGRFRGNLSGKRVDFSGRTVISPDP 405

Query: 400  YLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPN 459
             + V+E+ +P   A +LTYPERV   N+  LR++++NG +I PGA  Y+ K +  +    
Sbjct: 406  NIEVDEVVVPMIIAKKLTYPERVNAINIDSLREAVLNGHDIWPGAC-YVYKSNGSKSSLR 464

Query: 460  KKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAH 519
               R  +  +L+                  G +V RH++ GD+VL NRQP+LH+ SIM+H
Sbjct: 465  YANRRVVSERLEI-----------------GDIVERHMKTGDIVLFNRQPSLHRLSIMSH 507

Query: 520  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNG 579
             V V+   +T R +   C+ YNADFDGDEMN+H PQ+E++R+E+ +++   N  V P NG
Sbjct: 508  KVVVMPW-RTFRFNECACAPYNADFDGDEMNLHLPQNELARSESKHLMGLMNNLVTPRNG 566

Query: 580  DPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSE 639
            +PL +  QD ++   +LT +D FL RD+F Q  Y    S+  +                 
Sbjct: 567  EPLIAATQDFLLGMYVLTGRDIFLTRDQFSQ--YCCHFSNGQI----------------P 608

Query: 640  QEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQS 699
             E+ P  P I KP  LWTGKQV   +L      RP                         
Sbjct: 609  MELPP--PTILKPVELWTGKQVFNMIL------RP------------------------- 635

Query: 700  DRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDL 759
                N+K ++  + ++ +     K ++ +  P                +E  +++  ++L
Sbjct: 636  --NSNEKERIDVSFELKERDYDSKSDLKDLCP----------------NEGYVVVRHSEL 677

Query: 760  VRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL- 815
            + G I K      +  GL   +     +  +   +  +SR  + +L   G T G+DD+  
Sbjct: 678  LAGAIGKKVLGGGSKEGLFFYILLENNAKKSSECMGRISRFVSRYLANKGMTIGIDDVTP 737

Query: 816  ----------ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMR 865
                      +L+D  +  ++ ++ S E GK      L LED  E   +K+K  ++    
Sbjct: 738  NAELLVAKKNLLEDGYQRVQDEIN-SYEKGKLTPHPGLSLEDTLE---LKVKKILDDIRN 793

Query: 866  GGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQ 925
              G A+              H S            L P+ K    LM  SGAKG  +N  
Sbjct: 794  EAGKAS--------------HIS------------LPPSNKPL--LMYLSGAKGQLINIA 825

Query: 926  QISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMA 985
            Q+ + +GQQ + G+R+    + +TLP F       R+ GF+ + F +GL+P E++FH M+
Sbjct: 826  QMVACVGQQNVAGQRIQNGFTNRTLPHFKMNCVDGRSRGFVGNSFFSGLQPDEFFFHTMS 885

Query: 986  GREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            GREGLVDTAVKT+ +GY+QR L+K LE L I YD +VR +DG I+QF YG+DG++
Sbjct: 886  GREGLVDTAVKTAETGYMQRRLVKALEDLCIKYDQTVRTSDGQIIQFIYGDDGLN 940



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 57/78 (73%), Gaps = 1/78 (1%)

Query: 1126 DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1185
            +F+K    K++ ++ +PGE VG +A+QS+GEP TQMTL TFH AG   MNVTLG+PR++E
Sbjct: 1480 EFIKASWSKYMKAITEPGEAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKE 1539

Query: 1186 ILTIASKDIKTPVITCPL 1203
            I+  A+K I TP+I   L
Sbjct: 1540 IINAATK-ILTPIIEAKL 1556



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF 47
           C +CG     C GH+G+IDL  PV++   F  LY +L  IC  C  F
Sbjct: 126 CSSCGGTLKTCGGHWGYIDLQQPVFHVGYFKHLYGVLCCICKSCGAF 172


>gi|66475716|ref|XP_627674.1| DNA-directed RNA polymerase III C1 subunit [Cryptosporidium parvum
            Iowa II]
 gi|46229106|gb|EAK89955.1| DNA-directed RNA polymerase III C1 subunit [Cryptosporidium parvum
            Iowa II]
          Length = 1871

 Score =  332 bits (851), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 241/775 (31%), Positives = 375/775 (48%), Gaps = 144/775 (18%)

Query: 289  VPPIKFRLPSKGGDS-VMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQS 347
            VPP   R     G+S   E   TV+LS++   N  +  + +        ++  W  LQ  
Sbjct: 251  VPPNCIRPSVTMGESGSNEDDLTVILSEITDLN-NIIKSQMKSGFQTFQLLGNWEFLQLQ 309

Query: 348  VNVLFDGKNAAGQRDMAS--------GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDP 399
               L +       + +AS        G+CQ L+ KEG FR  L GKRV+++ R+VISPDP
Sbjct: 310  CTRLINADAPGVNQLLASKNIPKAGRGVCQRLKGKEGRFRGNLSGKRVDFSGRTVISPDP 369

Query: 400  YLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPN 459
             + V+E+ +P   A +LTYPERV   N+  LR++++NG +I PGA  Y+ K +  +    
Sbjct: 370  NIEVDEVVVPMIIAKKLTYPERVNAINIDSLREAVLNGHDIWPGAC-YVYKSNGSKSSLR 428

Query: 460  KKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAH 519
               R  +  +L+                  G +V RH++ GD+VL NRQP+LH+ SIM+H
Sbjct: 429  YANRRVVSERLEI-----------------GDIVERHMKTGDIVLFNRQPSLHRLSIMSH 471

Query: 520  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNG 579
             V V+   +T R +   C+ YNADFDGDEMN+H PQ+E++R+E+ +++   N  V P NG
Sbjct: 472  KVVVMPW-RTFRFNECACAPYNADFDGDEMNLHLPQNELARSESKHLMGLMNNLVTPRNG 530

Query: 580  DPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSE 639
            +PL +  QD ++   +LT +D FL RD+F Q  Y    S+  +                 
Sbjct: 531  EPLIAATQDFLLGMYVLTGRDIFLTRDQFSQ--YCCHFSNGQI----------------P 572

Query: 640  QEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQS 699
             E+ P  P I KP  LWTGKQV   +L      RP                         
Sbjct: 573  MELPP--PTILKPVELWTGKQVFNMIL------RP------------------------- 599

Query: 700  DRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDL 759
                N+K ++  + ++ +     K ++ +  P                +E  +++  ++L
Sbjct: 600  --NSNEKERIDVSFELKERDYDSKSDLKDLCP----------------NEGYVVVRHSEL 641

Query: 760  VRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL- 815
            + G I K      +  GL   +     +  +   +  +SR  + +L   G T G+DD+  
Sbjct: 642  LAGAIGKKVLGGGSKEGLFFYILLENNAKKSSECMGRISRFVSRYLANKGMTIGIDDVTP 701

Query: 816  ----------ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMR 865
                      +L+D  +  ++ ++  E+ GK      L LED  E   +K+K  ++    
Sbjct: 702  NAELLVAKKNLLEDGYQRVQDEINSYEK-GKLTPHPGLSLEDTLE---LKVKKILDDIRN 757

Query: 866  GGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQ 925
              G A+              H S            L P+ K    LM  SGAKG  +N  
Sbjct: 758  EAGKAS--------------HIS------------LPPSNKPL--LMYLSGAKGQLINIA 789

Query: 926  QISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMA 985
            Q+ + +GQQ + G+R+    + +TLP F       R+ GF+ + F +GL+P E++FH M+
Sbjct: 790  QMVACVGQQNVAGQRIQNGFTNRTLPHFKMNCVDGRSRGFVGNSFFSGLQPDEFFFHTMS 849

Query: 986  GREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            GREGLVDTAVKT+ +GY+QR L+K LE L I YD +VR +DG I+QF YG+DG++
Sbjct: 850  GREGLVDTAVKTAETGYMQRRLVKALEDLCIKYDQTVRTSDGQIIQFIYGDDGLN 904



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 57/78 (73%), Gaps = 1/78 (1%)

Query: 1126 DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1185
            +F+K    K++ ++ +PGE VG +A+QS+GEP TQMTL TFH AG   MNVTLG+PR++E
Sbjct: 1444 EFIKASWSKYMKAITEPGEAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKE 1503

Query: 1186 ILTIASKDIKTPVITCPL 1203
            I+  A+K I TP+I   L
Sbjct: 1504 IINAATK-ILTPIIEAKL 1520



 Score = 42.4 bits (98), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF 47
           C +CG     C GH+G+IDL  PV++   F  LY +L  IC  C  F
Sbjct: 90  CSSCGGTLKTCGGHWGYIDLQQPVFHVGYFKHLYGVLCCICKSCGAF 136


>gi|3172136|gb|AAC18417.1| RNA polymerase II largest subunit [Acanthamoeba castellanii]
          Length = 1569

 Score =  332 bits (851), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 228/705 (32%), Positives = 346/705 (49%), Gaps = 132/705 (18%)

Query: 358  AGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLT 417
            +G R + S + Q L  KEG  R  LMGKRV+++ R+VI+ DP ++++E+G+P   AL LT
Sbjct: 246  SGSRALKS-LKQRLRGKEGRIRGNLMGKRVDFSARTVITGDPNISIDEVGVPRSIALNLT 304

Query: 418  YPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAI 477
            YPE VTP+N+ K+ + I NG   HPGA + +                  G++LD      
Sbjct: 305  YPELVTPFNIDKMYELIRNGPTEHPGAKYIIR---------------DDGQRLDLRFAR- 348

Query: 478  VQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYAN 536
                K SD   E G  V RH+QDGDV++ NRQP+LHK S+M H V+++    T R++ + 
Sbjct: 349  ----KASDLHLEYGYKVERHIQDGDVIIFNRQPSLHKMSMMGHKVKIMP-YSTFRLNLSV 403

Query: 537  CSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALL 596
             + YNADFDGDEMN+H PQ   +RAE   ++    Q V   +  P+  ++QD ++   LL
Sbjct: 404  TTPYNADFDGDEMNMHVPQTPGARAEVIELMMVPKQIVTAQSNKPVIGIVQDTLLGGCLL 463

Query: 597  TKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLW 656
            T++DTF+ +D    +L         L S+ G               +P  P I KP+ LW
Sbjct: 464  TQRDTFIEKDVMMNILM-------WLESWDG--------------TVP-TPTILKPKQLW 501

Query: 657  TGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMH 716
            TGKQV + ++   T     FV                NAD                    
Sbjct: 502  TGKQVFSLIIPRNTN----FV----------------NAD-------------------- 521

Query: 717  KDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGL 774
                             ++E + + +  K L EE       +LV G+++K     +   L
Sbjct: 522  -----------------DEEPDMSFTDNKVLIEE------GELVSGILNKKTLGTSHKSL 558

Query: 775  VHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEI 834
            VH +   +GS      L+ +  +   +L  HGF+ GV D +                EE 
Sbjct: 559  VHVIWNEHGSEVCKHFLNQVQHVVNYWLLHHGFSVGVGDTI--------------ADEET 604

Query: 835  GKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINE 894
              ++     + +D  E+   +L+++  +  R  G   +  F+  +   LNK    +    
Sbjct: 605  LAKITQTIRKAKD--EVKERQLEAQQGQLERQPGRTMMESFEFVINQILNKARDDA--GN 660

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
               + L +    N    M  +G+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F 
Sbjct: 661  SAQKSLRR---SNNFKAMVIAGSKGSAINISQVLACVGQQNVEGKRIPFCFRDRTLPHFV 717

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
              D+ P + GF+ + +L GL PQE++FH M GREGL+DTAVKT+ +GY+QR L+K LE +
Sbjct: 718  KDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDV 777

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERG 1059
             + YDY+VR++ G ++QF YGEDG+D  QT      DAL     G
Sbjct: 778  MVKYDYTVRNSLGDVIQFLYGEDGMD-GQTVETQPLDALKMSNEG 821



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 1/77 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
             L  +  +F  SL  PGE +G LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+E+
Sbjct: 975  LLGEITDRFYKSLCDPGEMIGALAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEL 1034

Query: 1187 LTIASKDIKTPVITCPL 1203
            + IA K IKTP +T  L
Sbjct: 1035 INIA-KTIKTPSLTVYL 1050



 Score = 45.8 bits (107), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 11 CPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
          CPGHFGH++L  PV+N      +  +L+ +CF C
Sbjct: 2  CPGHFGHLELAKPVFNIGFLTTVLKILRSVCFHC 35


>gi|405120884|gb|AFR95654.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus
            neoformans var. grubii H99]
          Length = 1786

 Score =  332 bits (850), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 250/810 (30%), Positives = 387/810 (47%), Gaps = 150/810 (18%)

Query: 244  PSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFR--LPSKGG 301
            P +V +I++K+   +  +    +D  +  +          L V+ VPP   R  +   GG
Sbjct: 219  PGEVYNILKKITPEDLHIMGLNADYARPDW--------MILTVLPVPPAAVRPSIAVDGG 270

Query: 302  DSVMEHPQTVLLSKVLQAN--IYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
                E   T  LS++++ N  +    A    P    V+  ++  LQ  V    D   A  
Sbjct: 271  AMRSEDDLTYKLSQIIKFNGVVRRMEAEGVPP---SVVNEQFDLLQYHVCTYMDNDIAGL 327

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             RD   G      I   L+ KEG  R  LMGKRV+++ R+VI+ DP L ++++G+P   A
Sbjct: 328  PRDQQKGGRAIKAIRARLKGKEGRMRGNLMGKRVDFSARTVITGDPNLQLDQVGVPKSIA 387

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTS 473
            + LTYPERVTP+N+V L+  + NG   +PGA +Y+                  G ++D  
Sbjct: 388  MTLTYPERVTPYNIVYLQTLVNNGPATYPGARYYVK---------------DTGERVDLK 432

Query: 474  RGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH 533
                 + G+    +F G +V RHL+DGD VL NRQP+LHK S+M+H V+++    T R++
Sbjct: 433  ---YRKSGEPISLQF-GWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMN-YSTFRLN 487

Query: 534  YANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSA 593
             +  S YNADFDGDEMN+H PQ E +RAE   I     Q V P    P+  ++QD +   
Sbjct: 488  LSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGI 547

Query: 594  ALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPE 653
               T +D FL   ++ Q+                   Q +L+   E       PAI+KP+
Sbjct: 548  RKFTLRDNFL---DWLQV-------------------QHILLWLPEWNGTIPPPAIFKPK 585

Query: 654  PLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTN 713
            P+WTGKQ+++                    +P+    T  N +K S     D+  L +  
Sbjct: 586  PMWTGKQLLSMT------------------IPKGINITYKNNEKPSPIDVTDENVLIENG 627

Query: 714  KMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG 773
                       E+V G                        I KN         A  A+ G
Sbjct: 628  -----------ELVHGT-----------------------IVKN--------MAGSANNG 645

Query: 774  LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEE 833
            LVH +    G   A    SA+ R+   +L  +GF+ G+ D ++ K       N +  ++E
Sbjct: 646  LVHVIFRELGHIAARDFFSAVQRVVNYWLLHYGFSVGIGDTIVDKATMAGITNRMVEAKE 705

Query: 834  IGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKH---TSSS 890
              +++  EA         +  ++K +    +R   +A++A       ++LNK    T  +
Sbjct: 706  AVQKLIQEA---------EANRMKPKPGMTIRETLEASIA-------AELNKARDWTGKT 749

Query: 891  VINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTL 950
              + L ++        N +  M  SGAKGS +N  Q+S  +GQQ +EGKR+      ++L
Sbjct: 750  TQDNLKAD--------NNVKQMVVSGAKGSFINISQMSGVVGQQFVEGKRISFGFRHRSL 801

Query: 951  PSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1010
            P F   D+ P + GF+ + +L GL PQE++FH M GREGL+DTAVKT+ +GY+QR L+K 
Sbjct: 802  PHFSRDDYGPESRGFVENSYLRGLTPQEFWFHAMGGREGLIDTAVKTAETGYIQRRLVKA 861

Query: 1011 LECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            +E LK++YD +VR++   +VQF YGEDG+D
Sbjct: 862  MEDLKVAYDGTVRNSVNEVVQFLYGEDGMD 891



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 1/73 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            V+  F  ++    E VG LA+QS+GEP+TQMTLNTFH AG    +VT G+PRL+EI+ +A
Sbjct: 1065 VEQIFNKAVVNAAEMVGTLAAQSIGEPATQMTLNTFHYAGVASKSVTGGVPRLKEIINVA 1124

Query: 1191 SKDIKTPVITCPL 1203
              +I+TP +   L
Sbjct: 1125 V-NIRTPALNVYL 1136



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE--VEKCV 58
           C+TC +    CPGHFGHI+L  PV++      +  +L+ +C+ C   K   R+  V   V
Sbjct: 67  CQTCLEGMSECPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMRDPMVANAV 126

Query: 59  RKLE 62
           R+++
Sbjct: 127 RRIK 130


>gi|367004166|ref|XP_003686816.1| hypothetical protein TPHA_0H01760 [Tetrapisispora phaffii CBS 4417]
 gi|357525118|emb|CCE64382.1| hypothetical protein TPHA_0H01760 [Tetrapisispora phaffii CBS 4417]
          Length = 1459

 Score =  332 bits (850), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 231/728 (31%), Positives = 363/728 (49%), Gaps = 127/728 (17%)

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVNVL-FDGKNAAGQRDMASGICQLLEKKEGLFRQKLM 383
            N  +   D  ++ VA ++N   SVN+L   G N   +     G CQ L+ K+G FR  L 
Sbjct: 310  NNMMEHWDYLQLSVAMYIN-SDSVNLLVMPGSNGGTKAKPIRGFCQRLKGKQGRFRGNLS 368

Query: 384  GKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPG 443
            GKRV+++ R+VISPDP L+++E+ +P   A  LTYPE+VT +N  KL+  ++NG  +HPG
Sbjct: 369  GKRVDFSGRTVISPDPNLSIDEVAVPELVAKVLTYPEKVTRYNKTKLQKLVMNGPNVHPG 428

Query: 444  ATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVV 503
            A + L      R       R  + ++L                   G +V RHL+DGD+V
Sbjct: 429  ANYLLKSNEEARRNLRYGNRDKLAKQLRI-----------------GDIVERHLEDGDIV 471

Query: 504  LVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVH-FPQDEVSRAE 562
            L NRQP+LH+ SI++H  ++ +  +T R++   C+ YNADFDGDEMN+  + Q E +RAE
Sbjct: 472  LFNRQPSLHRLSILSHFAKI-RPWRTFRLNECVCTPYNADFDGDEMNLLCYQQTEEARAE 530

Query: 563  AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL 622
            A N++   N  + P +G+P+ +  QD I  + L++ KD+F +R    QLL  S +S + L
Sbjct: 531  AINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLTQLL--SMMSDANL 588

Query: 623  GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGG 682
              F   P                 PAI+KP+ LWTGKQ+ + ++        P V+    
Sbjct: 589  -KFDIPP-----------------PAIFKPQCLWTGKQIFSLLIK--PNKESPVVI---- 624

Query: 683  KLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKS 742
                                      L   NK++                      +NKS
Sbjct: 625  -------------------------NLDAKNKVYI-------------------PPQNKS 640

Query: 743  KEKELS--EEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRL 797
               E+S  +  ++I  ++++ GV+DK+   D   + + +T+   YG   +   ++ +++L
Sbjct: 641  WPSEMSPNDGYVIIRGSEILSGVMDKSVLGDGKKHSVFYTILRDYGPQESANAMNRMAKL 700

Query: 798  FTVFLQMHGFTCGVDDL-----LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID 852
               +L   GF+ G+ D+     L LK KE   +      +E+  + +   LE + G    
Sbjct: 701  CARYLGNRGFSIGISDVTPGEELKLK-KEDLVEIAYKKCDELIIQYNKGELETQPGCN-- 757

Query: 853  PIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLM 912
                + +  +A  GG           + S++ +      INEL  + L  P       +M
Sbjct: 758  ----EEQTLEAKIGG-----------LLSKVREEVGDVCINEL--DNLNAPL------IM 794

Query: 913  TTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLT 972
             T G+KGS +N  Q+ + +GQQ + G RVP     ++LP F      P++ GF+ + F T
Sbjct: 795  ATCGSKGSNLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFEKNSKTPQSKGFVRNSFFT 854

Query: 973  GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQF 1032
            GL P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD ++R +   IVQF
Sbjct: 855  GLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTIRTSSNGIVQF 914

Query: 1033 CYGEDGVD 1040
             YG DG+D
Sbjct: 915  TYGGDGLD 922



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 65/106 (61%), Gaps = 2/106 (1%)

Query: 1100 MELPDALKDNAEKFADKFLS-NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPS 1158
            ++  + +  N  +  DK    +E   + FL++   K+  +  +PG  VG + +QS+GEP 
Sbjct: 1042 IDFDENIPSNVREVVDKLCKISEANVKKFLEIAISKYHRAKVEPGTAVGAIGAQSIGEPG 1101

Query: 1159 TQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            TQMTL TFH AG   MNVTLG+PR++EI+  ASK I TP+I   L+
Sbjct: 1102 TQMTLKTFHFAGVASMNVTLGVPRIKEIIN-ASKTISTPIIKAVLV 1146


>gi|33326211|gb|AAQ08515.1| RNA polymerase II largest subunit [Zea mays]
          Length = 1009

 Score =  332 bits (850), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 235/726 (32%), Positives = 345/726 (47%), Gaps = 148/726 (20%)

Query: 334  AKVIVARWMNLQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRV 387
            A +I      LQ  +   FD    G+  A QR       IC  L+ KEG  R  LMGKRV
Sbjct: 214  AHIITEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 273

Query: 388  NYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY 447
            +++ R+VI+PDP + ++E+G+P   AL LTYPE VTP+N+ +L++ +  G   HP     
Sbjct: 274  DFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGP--HP----- 326

Query: 448  LDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVN 506
                     PP K     I R+ D  R  +    K SD   E G  V RHL DGD VL N
Sbjct: 327  ---------PPGKTGAKYIIRE-DGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFN 376

Query: 507  RQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNI 566
            RQP+LHK SIM H ++++    T R++ +  S YNADFDGDEMN+H PQ   +RAE   +
Sbjct: 377  RQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLEL 435

Query: 567  VNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFT 626
            +      V P +  P+  ++QD ++    +TK+DT + +D F  +L            F 
Sbjct: 436  MMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILM-------WWQDFD 488

Query: 627  GKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQ 686
            GK              +P  P I KP P+WTGKQV   +                  +P+
Sbjct: 489  GK--------------IP-APTILKPRPIWTGKQVFNLI------------------IPK 515

Query: 687  DFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKE 746
                 RF+A    +    +KG ++  + M +                             
Sbjct: 516  QINLIRFSAWHSEE----EKGFITPGDTMVR----------------------------- 542

Query: 747  LSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
                   I K +L+ G + K         L+H + E  G + A   L     L   +L  
Sbjct: 543  -------IEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 595

Query: 805  HGFTCGVDDLL-------ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLK 857
            +GF+ G+ D +        + D   + KN +   +E+ K+ H + LE E G  +      
Sbjct: 596  NGFSIGIGDTIADASTMETINDTISKAKNAV---KELIKKAHEKQLEAEPGRTM------ 646

Query: 858  SEIEKAMRGGGDAAVAYFDMKMTSQLNK---HTSSSVINELLSEGLLKPTGKNWISLMTT 914
                          +  F+ ++   LNK      SS  N L     LK         M T
Sbjct: 647  --------------MESFENRVNQVLNKARDDAGSSAQNSLSESNNLKA--------MVT 684

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            +G+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL
Sbjct: 685  AGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGL 744

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
             PQE++FH M GREGL+DTAVKTS +GY+QR L+K +E + + YD +VR++ G ++QF Y
Sbjct: 745  TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 804

Query: 1035 GEDGVD 1040
            GEDG+D
Sbjct: 805  GEDGMD 810


>gi|429329501|gb|AFZ81260.1| DNA-directed RNA polymerase III C1 subunit, putative [Babesia equi]
          Length = 1548

 Score =  332 bits (850), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 240/767 (31%), Positives = 373/767 (48%), Gaps = 133/767 (17%)

Query: 292  IKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVL 351
            I+  +P +G  S  E   T++ S +++ N  L     +   +++ I+  W  +Q     L
Sbjct: 314  IRPSVPMEGQGST-EDDLTIITSDIIEVNKTLKKQLQDGQQSSRFIL-NWQFMQLHCTRL 371

Query: 352  FDGKNAAGQRDMAS--------GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
             +    A  + +++        G+CQ L+ KEG FR  L GKR +++ R+VISPDP + +
Sbjct: 372  INTDAPAVSQLLSTKNITKPGRGLCQRLKGKEGRFRGNLSGKRADFSSRTVISPDPNVGI 431

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLD---KLSTMRLPPNK 460
            +EI +P   A +LT+PE V   N+  LR ++ING  + PGA++ +      +T+R     
Sbjct: 432  DEIVVPEQIATKLTFPEVVNAGNIEVLRKAVINGWSVWPGASYVIKANGSKTTLR----- 486

Query: 461  KMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHV 520
                            I  P   +DN   G +V RHL DGD+V+ NRQP+LH+ SIMAH 
Sbjct: 487  ----------------IANPNHIADNLEIGDIVERHLWDGDIVIFNRQPSLHRMSIMAHR 530

Query: 521  VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGD 580
            VRV+ G  T R +   C  YNADFDGDEMN+H PQ   +RAE+  +++       P NGD
Sbjct: 531  VRVMPGS-TFRFNECVCQPYNADFDGDEMNMHLPQTYEARAESLYLLSVLQNLTTPRNGD 589

Query: 581  PLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQ 640
            PL + +QD + ++ LLT KD FL R +FCQ+             FT    Q         
Sbjct: 590  PLIAAVQDFLSASYLLTSKDRFLTRKQFCQI----------CCYFTNASIQ--------V 631

Query: 641  EVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSD 700
            ++ P  PAI  P  LWTGKQ+   +L      RP                          
Sbjct: 632  DIPP--PAIIYPTMLWTGKQIFNVLL------RP-------------------------- 657

Query: 701  RKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLV 760
                     S+ + +  +   +++E    K  E      N  +     +  ++ Y ++L+
Sbjct: 658  ---------SRKSNVIVNFECREREFHNIKDYEHNYGMTNLHQCMCPKDGYVIFYNSELM 708

Query: 761  RGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILK 818
             G +       +  GL + + +   S  A   +  +S+L + +L   G T G+DD+    
Sbjct: 709  CGALGVKSLGASKGGLFYQLLKKNSSKIAAECMLRVSKLASRWLAEFGMTIGLDDV---- 764

Query: 819  DKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMK 878
                       G+E + ++  L    L DG         S + +A++   D   AY    
Sbjct: 765  ---------RPGAELLNRKSEL----LMDGY--------SRVSEAIKNFKDLQ-AYPGCT 802

Query: 879  MTSQLNKHTSSSVINELLSE------GLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
                L      SV+++L +E        LK   K  I  M  SGAKG+ +N  Q+ + +G
Sbjct: 803  REETLELQV-KSVLDDLRNEAGKVCNAHLKNDNKPLI--MFNSGAKGALINIAQMVACVG 859

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ + G+R+     G+TLP F+      ++ GF+ + F +GL P+E++FH M+GREGL+D
Sbjct: 860  QQNVSGQRIQNGFIGRTLPHFNIGCRDAKSRGFVANSFFSGLEPEEFFFHTMSGREGLID 919

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            TAVKTS +GY+QR L+K +E L I YD++VR +DG +VQF YG+DG+
Sbjct: 920  TAVKTSETGYMQRKLMKVMEDLAICYDHTVRASDGHVVQFLYGDDGL 966



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 1/78 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            F++     +   + +PGE +G L +QS+GEP+TQMTL TFH AG   MNVTLG+PR+QEI
Sbjct: 1193 FIRYCWKDYQKGVCEPGEAIGALGAQSIGEPATQMTLKTFHFAGVASMNVTLGVPRIQEI 1252

Query: 1187 LTIASKDIKTPVITCPLL 1204
            +  AS  I TP+I  PL+
Sbjct: 1253 IN-ASASIITPIIEVPLV 1269



 Score = 40.4 bits (93), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEK 56
           C TCG+    C GH+G++ L +PV++   F  L  +L  IC  C +       ++K
Sbjct: 144 CSTCGKDNNHCVGHWGYVKLELPVFHVGFFKYLNQILYCICKRCSNLLLPEDSIKK 199


>gi|302794771|ref|XP_002979149.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
 gi|300152917|gb|EFJ19557.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
          Length = 1764

 Score =  332 bits (850), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 234/708 (33%), Positives = 344/708 (48%), Gaps = 132/708 (18%)

Query: 344  LQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
            LQ  +   FD    G+  A QR       ICQ L+ KEG  R  LMGKRV+++ R+VI+P
Sbjct: 325  LQFHIATYFDNDLPGQPRATQRSGRPIKSICQRLKAKEGRIRGNLMGKRVDFSARTVITP 384

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DP + ++E+G+P   AL LTYPE VTP+N+ +L++ +  G   HP              P
Sbjct: 385  DPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVEYGP--HP--------------P 428

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSI 516
            P K     I R+ D  R  +    K SD   E G  V RHL DGD VL NRQP+LHK SI
Sbjct: 429  PGKTGAKYIIRE-DGQRLDLRYLKKSSDRHLELGYKVERHLCDGDFVLFNRQPSLHKMSI 487

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            M H +R++    T R++ +  S YNADFDGDEMN+H PQ   +RAE   ++      V P
Sbjct: 488  MGHRIRIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVSELMIVPKCIVSP 546

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
             +  P+  ++QD ++    +TK+DTF+ +D F  +L            F GK        
Sbjct: 547  QSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFMNILM-------WWEDFDGK-------- 591

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
                  +P  PAI KP P+WTGKQ+ + +                  +P+          
Sbjct: 592  ------VP-TPAIVKPRPIWTGKQIFSLI------------------IPKQI-------- 618

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
                        + +T   H D      E  +  PG                +  + I K
Sbjct: 619  -----------NMVRTAAWHND-----SETGDNSPG----------------DTMVRIEK 646

Query: 757  NDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             +L+ G + K     +   L+H + E  G + A   L     L   +L  HGF+ G+ D 
Sbjct: 647  GELLTGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQHGFSIGIGDT 706

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
            +                E+I + +     E++     D IK+  E ++     G   +  
Sbjct: 707  IA----------DSATMEKINETIFKAKNEVK-----DLIKMAQE-KQLESQPGRTMMES 750

Query: 875  FDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
            F+ ++   LN  +  + S   + LSE        N +  M T+G+KGS +N  Q+ + +G
Sbjct: 751  FENRVNQVLNRARDEAGSSAQKSLSES-------NNVKAMVTAGSKGSFINISQMIACVG 803

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL PQE+YFH M GREGL+D
Sbjct: 804  QQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFYFHAMGGREGLID 863

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            TAVKTS +GY+QR L+K +E + + YD +VR++ G ++QF YGEDG+D
Sbjct: 864  TAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMD 911



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 53/67 (79%), Gaps = 1/67 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F+ SL  PGE +G +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ +A
Sbjct: 1087 IETRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1146

Query: 1191 SKDIKTP 1197
             K IKTP
Sbjct: 1147 KK-IKTP 1152



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG     CPGHFGH++L  P+++      +  LL+ +C+ C H  A    +E C   
Sbjct: 66  CETCGGSMAECPGHFGHLELAKPMFHIGFLKTVLALLRCVCYNCSHILA----LEVCRET 121

Query: 61  LEL-IIKGDIIAAKSLDLDLPSESSNPE 87
           L L  I G +         L  ++ NP+
Sbjct: 122 LLLCFIFGLVCWQNDHKFKLAKKAKNPK 149


>gi|430812931|emb|CCJ29676.1| unnamed protein product [Pneumocystis jirovecii]
          Length = 1762

 Score =  332 bits (850), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 226/744 (30%), Positives = 361/744 (48%), Gaps = 151/744 (20%)

Query: 313  LSKVLQANIYLANAYVNQPDNAKV-IVARWMNLQQSVNVLFDGKNAAGQ--------RDM 363
            LS +++AN   AN    + + A + +V+ +  L Q     +   + AGQ        R +
Sbjct: 270  LSDIIKAN---ANVRRYEQEGAPMHVVSEYEQLLQFHVATYMDNDIAGQPQALQKTGRPL 326

Query: 364  ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVT 423
             S I   L+ KEG  R  LMGKRV+++ R+VI+ DP L+++E+G+P   A  LTYPE VT
Sbjct: 327  KS-IRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDELGVPRSIARILTYPETVT 385

Query: 424  PWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKD 483
            P+N+ KL++ + NG   HPGA + +                  G ++D          + 
Sbjct: 386  PYNIHKLQELVRNGPNEHPGAKYIIR---------------DTGERIDLRYHK-----RA 425

Query: 484  SDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNA 542
             D   + G  V RH+ DGDVV+ NRQP+LHK S+M H V+V+    T R++ +    YNA
Sbjct: 426  GDIPLQYGWRVERHITDGDVVIFNRQPSLHKMSMMGHRVKVMP-YSTFRINLSVTPPYNA 484

Query: 543  DFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTF 602
            DFDGDEMN+H PQ E +RAE   I     Q V P +  P+  ++QD +     LT++D F
Sbjct: 485  DFDGDEMNLHVPQSEETRAEIIEICMVPKQIVSPQSNKPVMGIVQDTLAGVKKLTRRDNF 544

Query: 603  LNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI 662
            L++D+   +L                    + +   +  + P  PAI KP+ +WTGKQ++
Sbjct: 545  LSKDQVMNIL--------------------LWVPEWDGNMPP--PAIIKPKAMWTGKQIL 582

Query: 663  TAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGK 722
            +             V+ +G    +D        +KQ+    +D G               
Sbjct: 583  S------------MVIPKGINFIRD-------DEKQTPMTPDDTG--------------- 608

Query: 723  KKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQE 780
                                         +++   +++ G++DK     +  GLVHT+  
Sbjct: 609  -----------------------------MMLENGEIIYGIVDKKTVGASQGGLVHTIMR 639

Query: 781  LYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHL 840
              G        + +  +   +L  +GF+ G+ D +   +  R+  N +  ++   + + L
Sbjct: 640  EKGPEVCRVFFNGIQMVVNYWLLHNGFSIGIGDTIADANTMRDITNTIAEAKAKVQEIIL 699

Query: 841  EA----LELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELL 896
            +A    L++E G  +     +S++ +A+    D A     M +                 
Sbjct: 700  DAQQNRLQVEPGMTLRE-SFESKVSRALNQARDTAGRSAQMSLKD--------------- 743

Query: 897  SEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPW 956
                      N +  M T+G+KGS +N  Q+S+ +GQQ +EGKR+P     +TLP F   
Sbjct: 744  ---------SNNVKQMVTAGSKGSFINISQMSACVGQQIVEGKRIPYGFKYRTLPHFTKD 794

Query: 957  DWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKI 1016
            D++P +GGFI + +L GL PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + +
Sbjct: 795  DYSPESGGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMV 854

Query: 1017 SYDYSVRDADGSIVQFCYGEDGVD 1040
             YD +VR++ G I+Q  YGEDG+D
Sbjct: 855  KYDGTVRNSLGDIIQLVYGEDGLD 878



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 68/94 (72%), Gaps = 1/94 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + +  +++  N++A +  L  ++ +F+ S+A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1033 SRRVIEEYRLNKVAFEWVLGEIETRFIHSVANPGEMVGTLAAQSIGEPATQMTLNTFHYA 1092

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            G    ++TLG+PRL+EIL +A K IKTP +T  L
Sbjct: 1093 GVSSKSITLGVPRLKEILNVA-KTIKTPSLTIYL 1125



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKA 49
           C+TCG+    CPGHFGHI+L  PV++      +  +L+ +C  C   KA
Sbjct: 70  CQTCGESMAECPGHFGHIELAKPVFHIGFLMKIKKILECVCLNCGKLKA 118


>gi|302813666|ref|XP_002988518.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
 gi|300143625|gb|EFJ10314.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
          Length = 1797

 Score =  332 bits (850), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 233/715 (32%), Positives = 341/715 (47%), Gaps = 146/715 (20%)

Query: 344  LQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
            LQ  +   FD    G+  A QR       ICQ L+ KEG  R  LMGKRV+++ R+VI+P
Sbjct: 317  LQFHIATYFDNDLPGQPRATQRSGRPIKSICQRLKAKEGRIRGNLMGKRVDFSARTVITP 376

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DP + ++E+G+P   AL LTYPE VTP+N+ +L++ +  G   HP              P
Sbjct: 377  DPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVEYGP--HP--------------P 420

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSI 516
            P K     I R+ D  R  +    K SD   E G  V RHL DGD VL NRQP+LHK SI
Sbjct: 421  PGKTGAKYIIRE-DGQRLDLRYLKKSSDRHLELGYKVERHLCDGDFVLFNRQPSLHKMSI 479

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            M H +R++    T R++ +  S YNADFDGDEMN+H PQ   +RAE   ++      V P
Sbjct: 480  MGHRIRIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVSELMIVPKCIVSP 538

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
             +  P+  ++QD ++    +TK+DTF+ +D F  +L            F GK        
Sbjct: 539  QSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFMNILM-------WWEDFDGK-------- 583

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
                  +P  PAI KP P+WTGKQ+ + +                  +P+          
Sbjct: 584  ------VP-TPAIVKPRPIWTGKQIFSLI------------------IPKQI-------- 610

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
                        + +T   H D      E  +  PG                +  + I K
Sbjct: 611  -----------NMVRTAAWHND-----SETGDNSPG----------------DTMVRIEK 638

Query: 757  NDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             +L+ G + K     +   L+H + E  G + A   L     L   +L  HGF+ G+ D 
Sbjct: 639  GELLTGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQHGFSIGIGDT 698

Query: 815  LI-------LKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGG 867
            +        + D   + KN +    +I +   LE+                         
Sbjct: 699  IADSATMEKINDTIFKAKNEVKDLIKIAQEKQLES-----------------------QP 735

Query: 868  GDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQ 925
            G   +  F+ ++   LN  +  + S   + LSE        N +  M T+G+KGS +N  
Sbjct: 736  GRTMMESFENRVNQVLNRARDEAGSSAQKSLSES-------NNVKAMVTAGSKGSFINIS 788

Query: 926  QISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMA 985
            Q+ + +GQQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL PQE+YFH M 
Sbjct: 789  QMIACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFYFHAMG 848

Query: 986  GREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            GREGL+DTAVKTS +GY+QR L+K +E + + YD +VR++ G ++QF YGEDG+D
Sbjct: 849  GREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMD 903



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 53/67 (79%), Gaps = 1/67 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F+ SL  PGE +G +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ +A
Sbjct: 1079 IETRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1138

Query: 1191 SKDIKTP 1197
             K IKTP
Sbjct: 1139 KK-IKTP 1144



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG     CPGHFGH++L  P+++      +  LL+ +C+ C H  A    +E C   
Sbjct: 66  CETCGGSMAECPGHFGHLELAKPMFHIGFLKTVLALLRCVCYNCSHILA----LEVCRET 121

Query: 61  LEL 63
           L L
Sbjct: 122 LLL 124


>gi|429962270|gb|ELA41814.1| hypothetical protein VICG_01166 [Vittaforma corneae ATCC 50505]
          Length = 1569

 Score =  331 bits (849), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 247/778 (31%), Positives = 372/778 (47%), Gaps = 143/778 (18%)

Query: 282  FFLGVVLVPPIKFRLPS--KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
              L  ++VPP   R PS    G    E   T  L+ +++AN YL   Y  +   + ++  
Sbjct: 205  MMLTTIIVPPPAMR-PSIVLNGHLRAEDDLTHKLADIVKANAYLKK-YEQEGAPSHIVRD 262

Query: 340  RWMNLQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRS 393
                LQ  +  L D    G+  A Q++      I   L+ KEG  R  LMGKRV+++ RS
Sbjct: 263  YEQLLQFHLATLVDNDIGGQPQALQKNGRPLKSITARLKGKEGRIRGNLMGKRVDFSARS 322

Query: 394  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLST 453
            VISPDP ++V ++G+P   A   T+PE+V  +N+  L+  +  G   HPGA + +     
Sbjct: 323  VISPDPLISVGQVGVPISIAKIHTFPEKVNSFNIDYLQKLVNRGPNEHPGANYVIR---- 378

Query: 454  MRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKM-----VYRHLQDGDVVLVNRQ 508
                       S G+++D +            N F+ K+     V RH+QD D VL NRQ
Sbjct: 379  -----------SDGQRIDLNF-----------NRFDLKLENGFTVERHMQDNDEVLFNRQ 416

Query: 509  PTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVN 568
            P+LHK S+M H V+V+ G K+ R++ +  S YNADFDGDEMN+H PQ   ++AE   +  
Sbjct: 417  PSLHKMSMMGHRVKVMSG-KSFRLNLSATSPYNADFDGDEMNLHMPQSYATKAELGLLTA 475

Query: 569  ANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGK 628
             + Q V P +  P+  ++QD +V + LLT +D F N+ E   LLYS         SF GK
Sbjct: 476  VDKQIVSPQSNKPVIGIVQDTLVGSRLLTVRDAFFNKREAMNLLYS-------FNSF-GK 527

Query: 629  PGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDF 688
                    ++E  +  L P I +P  LWTGKQ+ +A+                  LP+ F
Sbjct: 528  --------KNEDFLDYLRPTILQPVELWTGKQLFSAI------------------LPRIF 561

Query: 689  FKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELS 748
            +    NAD                                       E +        L+
Sbjct: 562  YMRDSNADIS-------------------------------------EMDNKGWNSINLT 584

Query: 749  EEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVF-LQMH 805
            +   +I    L+ G IDK        GL+H +   YGS  A   +  + R+ T F L + 
Sbjct: 585  DSTAIIRNGVLLAGPIDKKSVGAQQGGLIHIIFNDYGSEAAKNFIDNIQRIVTHFLLHIS 644

Query: 806  GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMR 865
             F+ G+ D +            L   +   KR   E        EI  +  K+E+EK   
Sbjct: 645  SFSVGIGDCV-------ADNRTLTLCKSAVKRAMSEV------DEIIALTKKNELEKM-- 689

Query: 866  GGGDAAVAYFDMKMTSQLNKH---TSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV 922
              G      F+ ++   LNK    + +S  N L S         N++  M  SG+KGS +
Sbjct: 690  -PGMTLSETFESRVNVILNKARNISGTSAQNSLNS--------CNYMKAMVLSGSKGSYI 740

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  QI + LGQQ +EGKR+P     ++LP F+ +D++ ++ GF+ + +L+G+ P E++FH
Sbjct: 741  NISQIITCLGQQNVEGKRIPFGFFERSLPHFYKYDFSAKSRGFVQNSYLSGMDPDEFFFH 800

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             M GREG++DTA+KT+ +GY+QR L+K LE   + +D+SVR+  G I QF YG+DG D
Sbjct: 801  AMGGREGIIDTAIKTAETGYIQRRLVKALEDAIVHHDFSVRNGRGDIYQFSYGDDGFD 858



 Score = 76.6 bits (187), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 56/85 (65%), Gaps = 5/85 (5%)

Query: 1116 KFLSNEMAKQDF---LKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRG 1172
            KF+   ++  DF   L  +K K + +     E VG LA+QSVGEP+TQMTLNTFHLAG  
Sbjct: 980  KFVLLNLSPADFNAVLSEIKTKILRAKVNANEMVGTLAAQSVGEPATQMTLNTFHLAGVA 1039

Query: 1173 EMNVTLGIPRLQEILTIASKDIKTP 1197
               VT+G+PRL EI+ +A K IKTP
Sbjct: 1040 S-TVTMGVPRLNEIINLA-KSIKTP 1062



 Score = 49.7 bits (117), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 7/81 (8%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE----VEK 56
           C+TC    F C GH+GHI+L  P+++      +   L+ +CF+C   K S++     +E 
Sbjct: 61  CQTCNSTSFECVGHYGHIELSKPMFHIGYLAKIKKTLECVCFYCSKIKGSKKNLRPGLED 120

Query: 57  C--VRKLELIIKG-DIIAAKS 74
           C  V K + I +G DI   KS
Sbjct: 121 CWTVLKSKSICEGEDIPEGKS 141


>gi|342183998|emb|CCC93479.1| DNA-directed RNA polymerase iii largest subunit [Trypanosoma
            congolense IL3000]
          Length = 1537

 Score =  331 bits (849), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 242/785 (30%), Positives = 359/785 (45%), Gaps = 158/785 (20%)

Query: 282  FFLGVVLVPPIKFRLPSKGG------DSVMEHPQTVLLS-KVLQANIYLANAYVNQPDNA 334
              +  +LVPP++ R     G      D +      +L+S + LQ     A  Y       
Sbjct: 258  LLMTTLLVPPVQVRPRGNAGTTAAREDDITAQYNDILISAETLQDGSLDATKYTET---- 313

Query: 335  KVIVARWMNLQQSVNVLFDGK-----NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNY 389
                  W  LQ     L D        +    D+ S   Q L+ K G FR  L GKRV+Y
Sbjct: 314  ------WELLQMRAARLLDSALPGFPPSVRTSDLKS-YAQRLKSKNGRFRCNLSGKRVDY 366

Query: 390  ACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGA-THYL 448
            + RSVISPDP L V+E+ +P + A  LTYP+RV   N   +R  + NG ++HPGA T YL
Sbjct: 367  SGRSVISPDPNLDVDELAVPLHVARVLTYPQRVFKSNHELMRRLVRNGPDVHPGAVTVYL 426

Query: 449  DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQ 508
             +  + +   N++ R+ +  +L                   G +V RH+ +GD++L NRQ
Sbjct: 427  AQEGSRKSLKNERDRLRLAARLAV-----------------GDIVERHVMNGDLILFNRQ 469

Query: 509  PTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVN 568
            P+LH+ S+MAH  RVL   +T R +   C+ YNADFDGDEMNVHF Q E +RAEA  +++
Sbjct: 470  PSLHRVSMMAHRARVLPF-RTFRFNECCCAPYNADFDGDEMNVHFVQTEEARAEALQLMS 528

Query: 569  ANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGK 628
                 +   NG+P+ +  QD + +A L T +D F +R E  Q++      S  LG  T  
Sbjct: 529  TAKNIISTKNGEPIIACTQDFLAAAYLATGRDVFFDRLEMSQMV------SYWLGPVT-- 580

Query: 629  PGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDF 688
                       Q  LP +PAI KP  LWTGKQ+   +L    R  P   +    + P  F
Sbjct: 581  -----------QFRLP-IPAILKPTELWTGKQLFELIL----RPSPEVDILLTFEAPTKF 624

Query: 689  FKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELS 748
            +                                                   K K    S
Sbjct: 625  Y-------------------------------------------------TKKGKHDCAS 635

Query: 749  EEKLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMH 805
            E  +    +  + G +DK      A  GL   +  L G      ++S +++  T +L  +
Sbjct: 636  EGYVAFLDSCFISGRLDKKLLGGGAKDGLFARLHTLAGGEYTARVMSRIAQFTTRYLTNY 695

Query: 806  GFTCGVDDL----------LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIK 855
            GF+ G+ D+            + ++  E  N L  S + G+ + L  L +    E    +
Sbjct: 696  GFSLGLGDVAPTAELNERKAAVLNRSVETCNRLIASAKTGRMIPLPGLTVRQSLE---AR 752

Query: 856  LKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTS 915
            L +E+ K     G AA+    +   + L                           LM  S
Sbjct: 753  LNTELSKVRDECGTAAMQTLSIDSNTPL---------------------------LMVQS 785

Query: 916  GAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLR 975
            G+KGS +N  Q+ + +GQQ + G+R+      ++LP FH ++ AP A GF+ + F +GL 
Sbjct: 786  GSKGSALNIAQMMACVGQQTVNGRRILDAFQDRSLPHFHRFEEAPAARGFVANSFYSGLS 845

Query: 976  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYG 1035
            P E++FH MAGREGLVDTAVKT+ +GY+ R L+K +E L + YD +VR+A G +VQ  +G
Sbjct: 846  PTEFFFHTMAGREGLVDTAVKTAETGYIYRRLMKAMENLCVRYDGTVRNARGDVVQLKFG 905

Query: 1036 EDGVD 1040
            EDG+D
Sbjct: 906  EDGLD 910



 Score = 90.5 bits (223), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 2/87 (2%)

Query: 1118 LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVT 1177
            LS  M  + FL     K++    +PG P G +A+QSVGEPSTQMTL TFH AG   MN+T
Sbjct: 1126 LSRSMVTR-FLAQCADKYIRKACEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMNIT 1184

Query: 1178 LGIPRLQEILTIASKDIKTPVITCPLL 1204
             G+PRL E++  A++ I TPV+T P+L
Sbjct: 1185 QGVPRLVEVIN-ANRSIATPVVTAPVL 1210



 Score = 50.1 bits (118), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG     C GH GHIDL  PV++   F+ +  + + IC  C H      E+E   R+
Sbjct: 74  CETCGLNNVECVGHPGHIDLEAPVFHLGFFSTVLRICRTICKRCSHVLLDDTEIEYYKRR 133

Query: 61  L 61
           L
Sbjct: 134 L 134


>gi|356538329|ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
            max]
          Length = 1827

 Score =  331 bits (849), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 221/680 (32%), Positives = 335/680 (49%), Gaps = 126/680 (18%)

Query: 367  ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
            IC  L+ KEG  R  LMGKRV+++ R+VI+PDP + ++++G+P   AL LTYPE VTP+N
Sbjct: 335  ICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYN 394

Query: 427  VVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN 486
            + +L++ +  G   HP              PP K     I R  D  R  +    K SD+
Sbjct: 395  IERLKELVEYGP--HP--------------PPGKTGAKYIIRD-DGQRLDLRYLKKSSDH 437

Query: 487  EFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
              E G  V RHL DGD VL NRQP+LHK SIM H ++++    T R++ +  S YNADFD
Sbjct: 438  HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNADFD 496

Query: 546  GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
            GDEMN+H PQ   +RAE   ++      V P +  P+  ++QD ++    +TK+DTF+ +
Sbjct: 497  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITK 556

Query: 606  DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
            D F  +L            F GK              +P  PAI KPEPLWTGKQV   +
Sbjct: 557  DVFMNILM-------WWEDFDGK--------------VP-APAILKPEPLWTGKQVFNLI 594

Query: 666  LNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKE 725
                              +P+     R++    S   ++++G ++  + M +        
Sbjct: 595  ------------------IPKQINLIRYS----SWHSESERGSITPGDTMVR-------- 624

Query: 726  VVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYG 783
                                        I K +L+ G + K         L+H + E  G
Sbjct: 625  ----------------------------IEKGELLTGTLCKKTLGTSTGSLIHVIWEEVG 656

Query: 784  SNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL 843
             + A   L     L   +L  + F+ G+ D +            +  ++E  K++  EA 
Sbjct: 657  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQ 716

Query: 844  ELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGLL 901
            E          KL++E  + M          F+ ++   LN  +  + +   + LSE   
Sbjct: 717  EK---------KLEAEPGRTMMDS-------FENRVNQTLNRARDDAGNSAQKSLSES-- 758

Query: 902  KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 961
                 N +  M T+G+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D+ P 
Sbjct: 759  -----NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPE 813

Query: 962  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1021
            + GF+ + +L GL PQE++FH M GREGL+DTAVKTS +GY+QR L+K +E + + YD +
Sbjct: 814  SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGT 873

Query: 1022 VRDADGSIVQFCYGEDGVDV 1041
            VR++ G ++QF YGEDG+D 
Sbjct: 874  VRNSLGDVIQFLYGEDGMDA 893



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 59/80 (73%), Gaps = 3/80 (3%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F+ SL   GE +G +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ +A
Sbjct: 1068 IESRFLQSLVASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1127

Query: 1191 SKDIKTPVITCPLL--VGKT 1208
             K IKTP ++  L   VGKT
Sbjct: 1128 -KRIKTPSLSVYLRSDVGKT 1146



 Score = 49.7 bits (117), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 9/61 (14%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC---------HHFKASR 51
           C+TC      CPGHFGH++L  P+++      + T+++ +CF C         H FK + 
Sbjct: 66  CETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHKFKQAL 125

Query: 52  R 52
           R
Sbjct: 126 R 126


>gi|58267574|ref|XP_570943.1| DNA-directed RNA polymerase ii largest subunit [Cryptococcus
            neoformans var. neoformans JEC21]
 gi|134112243|ref|XP_775097.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50257749|gb|EAL20450.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57227177|gb|AAW43636.1| DNA-directed RNA polymerase ii largest subunit, putative
            [Cryptococcus neoformans var. neoformans JEC21]
          Length = 1786

 Score =  331 bits (849), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 250/810 (30%), Positives = 387/810 (47%), Gaps = 150/810 (18%)

Query: 244  PSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFR--LPSKGG 301
            P +V +I++K+   +  +    +D  +  +          L V+ VPP   R  +   GG
Sbjct: 219  PGEVYNILKKITPEDLHIMGLNADYARPDW--------MILTVLPVPPAAVRPSIAVDGG 270

Query: 302  DSVMEHPQTVLLSKVLQAN--IYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
                E   T  LS++++ N  +    A    P    V+  ++  LQ  V    D   A  
Sbjct: 271  AMRSEDDLTYKLSQIIKFNGVVRRMEAEGVPP---SVVNEQFDLLQYHVCTYMDNDIAGL 327

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             RD   G      I   L+ KEG  R  LMGKRV+++ R+VI+ DP L ++++G+P   A
Sbjct: 328  PRDQQKGGRAIKAIRARLKGKEGRMRGNLMGKRVDFSARTVITGDPNLQLDQVGVPKSIA 387

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTS 473
            + LTYPERVTP+N+V L+  + NG   +PGA +Y+                  G ++D  
Sbjct: 388  MTLTYPERVTPYNIVYLQTLVNNGPATYPGARYYVK---------------DTGERVDLK 432

Query: 474  RGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH 533
                 + G+    +F G +V RHL+DGD VL NRQP+LHK S+M+H V+++    T R++
Sbjct: 433  ---YRKSGEPISLQF-GWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMN-YSTFRLN 487

Query: 534  YANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSA 593
             +  S YNADFDGDEMN+H PQ E +RAE   I     Q V P    P+  ++QD +   
Sbjct: 488  LSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGI 547

Query: 594  ALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPE 653
               T +D FL   ++ Q+                   Q +L+   E +     PAI+KP+
Sbjct: 548  RKFTLRDNFL---DWLQV-------------------QHILLWLPEWDGTIPPPAIFKPK 585

Query: 654  PLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTN 713
            P+WTGKQ+++                    +P+    T  N +K S     D+  L +  
Sbjct: 586  PMWTGKQLLSMT------------------IPKGINITYKNNEKPSPIDVTDENVLIENG 627

Query: 714  KMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG 773
                       E+V G                        I KN         A  A+ G
Sbjct: 628  -----------ELVHGT-----------------------IVKN--------MAGSANNG 645

Query: 774  LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEE 833
            LVH +    G   A    SA+ R+   +L   GF+ G+ D ++ K       N +  ++E
Sbjct: 646  LVHVIFRELGHIAARDFFSAVQRVVNYWLLHFGFSVGIGDTIVDKATMAGITNRMVEAKE 705

Query: 834  IGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKH---TSSS 890
              +++  EA         +  ++K +    +R   +A++A       ++LNK    T  +
Sbjct: 706  AVQKLIQEA---------EANRMKPKPGMTIRETLEASIA-------AELNKARDWTGKT 749

Query: 891  VINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTL 950
              + L ++        N +  M  SGAKGS +N  Q+S  +GQQ +EGKR+      ++L
Sbjct: 750  TQDNLKAD--------NNVKQMVVSGAKGSFINISQMSGVVGQQFVEGKRISFGFRHRSL 801

Query: 951  PSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1010
            P F   D+ P + GF+ + +L GL PQE++FH M GREGL+DTAVKT+ +GY+QR L+K 
Sbjct: 802  PHFSRDDYGPESRGFVENSYLRGLTPQEFWFHAMGGREGLIDTAVKTAETGYIQRRLVKA 861

Query: 1011 LECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            +E LK++YD +VR++   +VQF YGEDG+D
Sbjct: 862  MEDLKVAYDGTVRNSVNEVVQFLYGEDGMD 891



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 1/73 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            V+  F  ++    E VG LA+QS+GEP+TQMTLNTFH AG    +VT G+PRL+EI+ +A
Sbjct: 1065 VEQIFNKAVVNAAEMVGTLAAQSIGEPATQMTLNTFHYAGVASKSVTGGVPRLKEIINVA 1124

Query: 1191 SKDIKTPVITCPL 1203
              +I+TP +   L
Sbjct: 1125 V-NIRTPALNVYL 1136



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE--VEKCV 58
           C+TC +    CPGHFGHI+L  PV++      +  +L+ +C+ C   K   R+  V   V
Sbjct: 67  CQTCLEGMSECPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMRDPMVANAV 126

Query: 59  RKLE 62
           R+++
Sbjct: 127 RRIK 130


>gi|326431524|gb|EGD77094.1| polymerase II polypeptide A [Salpingoeca sp. ATCC 50818]
          Length = 1834

 Score =  331 bits (849), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 251/822 (30%), Positives = 381/822 (46%), Gaps = 130/822 (15%)

Query: 256  ENEFELCSFISDMQQQGFGKKAGHS---IFFLGVVLVPPIKFRLPSKGGDSVMEHPQ-TV 311
            E  +EL   IS    +  G    H+      +  + VPP+  R   + G     H   T 
Sbjct: 219  EEIYELLHNISHADAEALGFDPHHTRPDWLMITCLPVPPLAVRPSVQMGSGGRSHDDLTN 278

Query: 312  LLSKVLQANIYL-ANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS----- 365
              +++++AN  L  N     P +  VI    + LQ  V  LFD         M       
Sbjct: 279  QYAEIVKANNGLRENEQSGAPRH--VIEENVLYLQFKVATLFDNNLPHMPMSMQKSGRPI 336

Query: 366  -GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTP 424
              I Q L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   AL LT PERVT 
Sbjct: 337  KAISQRLKGKEGRIRGNLMGKRVDFSARTVINPDPNLEIDQVGVPTSVALTLTVPERVTN 396

Query: 425  WNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDS 484
            +N+  ++  +  G   HPGA + +          +   RI + R    +    +QP    
Sbjct: 397  FNINTMKQYVDRGPNQHPGAKYIIR---------DDGQRIDL-RHARNAMDLNLQP---- 442

Query: 485  DNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADF 544
                 G +V RHL+D DV++ NRQPTLHK S+M H V+VL    T RM+ +  S YNADF
Sbjct: 443  -----GYIVERHLKDDDVIIFNRQPTLHKMSMMGHRVKVLPW-STFRMNLSVTSPYNADF 496

Query: 545  DGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLN 604
            DGDEMN+H PQ   +RAE   I+      + P    P+  +IQD + +   LT +DTF+ 
Sbjct: 497  DGDEMNLHVPQSLGTRAEVEEIMMVQRNILTPQANRPVMGIIQDTLTAIRKLTFRDTFIE 556

Query: 605  RDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITA 664
            +D+  QLL           ++ G+              LP  PA+ KP+ LWTGKQ+++ 
Sbjct: 557  KDDMMQLLM-------WYPNWDGR--------------LP-EPALLKPKELWTGKQLVSM 594

Query: 665  VLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKK 724
            VL                                      DK  L +    H       +
Sbjct: 595  VL-------------------------------------PDKINLVQFYSQHDGSVDTPR 617

Query: 725  EVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELY 782
            +    K G   EAE      +   + ++LI    L+ G++ K        G++H +   +
Sbjct: 618  D----KDGNVIEAEDATHITQH--DTRVLIQNGKLISGILCKKTMGARANGVIHVIMMEH 671

Query: 783  GSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEA 842
            G   A      +  +   +L +HG + G+ D +           H + + +  K    E 
Sbjct: 672  GHERARQFYGNVQTVVNNWLLIHGHSIGIGDAIA--------DTHTYDTIDSEKAAANEK 723

Query: 843  L-ELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNK--HTSSSVINELLSEG 899
            + EL   A++D I+            G      F+ K+   LN+    +   + + LSE 
Sbjct: 724  VNELIQDAQLDKIEPSP---------GHTIRQTFEAKVNKNLNQVIKKTGGAVQKALSE- 773

Query: 900  LLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWA 959
                   N    M+T+G+KGS++N  QI + + QQ +EGKR+P     ++LP F   D+ 
Sbjct: 774  ------HNNFKAMSTAGSKGSEINISQIIACVSQQNVEGKRIPFGFRHRSLPHFVKDDYG 827

Query: 960  PRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYD 1019
            P A GF+   ++ GL P E++FH M GREGL+DTAVKT+ +GY+QR L+K++E L++ YD
Sbjct: 828  PHACGFVFSSYIQGLEPHEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKSMEGLRLEYD 887

Query: 1020 YSVRDADGSIVQFCYGEDGVD---VHQTSFISKFDALAARER 1058
             +VR++ G +VQ  YGEDG+D   V   S   K D     +R
Sbjct: 888  GTVRNSTGDLVQLHYGEDGMDGALVESQSLTLKLDNATFEKR 929



 Score = 83.6 bits (205), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 52/67 (77%), Gaps = 1/67 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++H+F  S AQP E VG LA+Q +GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ + 
Sbjct: 1082 IEHRFAQSQAQPAEMVGPLAAQCLGEPTTQMTLNTFHQAGYSAKNVTLGVPRLKEIINV- 1140

Query: 1191 SKDIKTP 1197
            S++ KTP
Sbjct: 1141 SRNPKTP 1147



 Score = 47.4 bits (111), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF--KASRREVEKCV 58
           C+TC      CPGHFGHIDL  PV +  + + +  +L+ IC  C       S  EV++ +
Sbjct: 67  CETCHGTASECPGHFGHIDLAKPVVHVGMISKIVQVLRCICKSCSKLLVDLSDDEVKEIL 126

Query: 59  RK 60
           R+
Sbjct: 127 RR 128


>gi|320166366|gb|EFW43265.1| polymerase II polypeptide A [Capsaspora owczarzaki ATCC 30864]
          Length = 1792

 Score =  331 bits (848), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 248/811 (30%), Positives = 381/811 (46%), Gaps = 145/811 (17%)

Query: 256  ENEFELCSFISD--MQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVME--HPQT 310
            E   E+   ISD   +  GF  + G   + +  VL VPP+  R PS   DSV       T
Sbjct: 235  EKAHEILKRISDEDCRALGFNPEQGRPDWMIITVLPVPPMTVR-PSVVMDSVARGIDDLT 293

Query: 311  VLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD----GKNAAGQRD--MA 364
              L+ +++AN  L    + +   A ++      LQ  V    D    G   A Q+     
Sbjct: 294  HKLADIIKANHNLRQQEL-RGSPAHIMEEYTKLLQYHVATYADNEIPGVATAQQKSGRPL 352

Query: 365  SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTP 424
              I Q ++ KEG  R  LMGKRV+++ R+VI+ DP L+++E+G+P   AL LT+PE VTP
Sbjct: 353  KSIRQRMKGKEGRIRGNLMGKRVDFSARTVITADPNLSLDEVGVPRSIALNLTFPEMVTP 412

Query: 425  WNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDS 484
            +N+ ++ + +  GA  HPGA + +    T         RI +       +   ++P    
Sbjct: 413  YNIDRMYELVRRGALEHPGAKYVIRDDGT---------RIDLRFSRTQGQEIHLEP---- 459

Query: 485  DNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADF 544
                 G  V RH+ DGD V+ NRQP+LHK S+M H +RVL    T R++ +  + YNADF
Sbjct: 460  -----GYRVERHIVDGDPVIFNRQPSLHKMSMMGHRIRVLPW-STFRLNLSVTTPYNADF 513

Query: 545  DGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLN 604
            DGDEMN+H PQ+  +RAE   I++ + Q + P+   P+  ++QD +  +  LTK+DTF+ 
Sbjct: 514  DGDEMNLHVPQNLETRAEVTEIMSVSRQILTPAGNRPVMGIVQDTLTGSRKLTKRDTFIE 573

Query: 605  RDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITA 664
             D   QLL         L  +TG   Q               PAI KP P+WTGKQ+ + 
Sbjct: 574  MDLMMQLLM-------WLPGWTGHVPQ---------------PAILKPRPMWTGKQIFSM 611

Query: 665  VLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKK 724
            +                  +P +                     L++T+  H D      
Sbjct: 612  I------------------IPAEV-------------------NLTRTHSTHDD------ 628

Query: 725  EVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELY 782
                       E +K        S+ K+LI K  L+ G+I K        GL+H + + +
Sbjct: 629  -----------EEDKGNYVHMSPSDTKVLIEKGRLLSGIICKKTLGPSAGGLIHILFKEW 677

Query: 783  GSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEA 842
            G   A    +A  R+   +L   G + G+ D  +  D                       
Sbjct: 678  GHEVARNFFNACQRVVNYWLMWEGHSIGIGD-AVADDA--------------------TM 716

Query: 843  LELEDGAEIDPIKLKSEIEKAMRG-----GGDAAVAYFDMKMTSQLN--KHTSSSVINEL 895
            +++ED        +K  +E A  G      G+     F+ ++   LN  +  +   + + 
Sbjct: 717  MQVEDAIRRAKEDVKKVVESAQHGRLESTPGNTLRETFENEVNKYLNNAREDAGKKVQDS 776

Query: 896  LSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHP 955
            L +        N   LM  +G+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F  
Sbjct: 777  LGD-------FNNFRLMAVAGSKGSVLNISQVIACVGQQNVEGKRIPFGFRFRTLPHFVK 829

Query: 956  WDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK 1015
             D+ P + GF+ + +L GL P E++FH M GREG++DTAVKTS +GY+QR L+K +E + 
Sbjct: 830  DDYGPESRGFVENSYLKGLTPSEFFFHAMGGREGVIDTAVKTSETGYIQRRLVKCMEDVM 889

Query: 1016 ISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            + YD +VR++ G ++QF YGEDG+D     F
Sbjct: 890  VKYDGTVRNSLGDVIQFVYGEDGLDGAHLEF 920



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 61/93 (65%), Gaps = 4/93 (4%)

Query: 1117 FLSNEMAKQDF---LKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGE 1173
             L + +  Q F   L  ++ +F  +  +PGE VG LA+QS+GEP+TQMTLNTFH AG   
Sbjct: 1073 LLEHRLHSQAFEWLLGEIESRFQQAKVEPGEMVGALAAQSLGEPATQMTLNTFHFAGVSA 1132

Query: 1174 MNVTLGIPRLQEILTIASKDIKTPVITCPLLVG 1206
             NVTLG+PRL+E++ + SK  KTP +T  L  G
Sbjct: 1133 KNVTLGVPRLRELINV-SKSPKTPSLTVYLQSG 1164



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
           C+TC      CPGHFGHI+LV PV+N  +   +   LK +C+ C     S
Sbjct: 80  CQTCTGSMGDCPGHFGHIELVKPVFNVTMMTKIQKTLKSVCYHCSRLLVS 129


>gi|242078217|ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
 gi|241940227|gb|EES13372.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
          Length = 1857

 Score =  331 bits (848), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 234/726 (32%), Positives = 348/726 (47%), Gaps = 146/726 (20%)

Query: 334  AKVIVARWMNLQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRV 387
            A +I      LQ  +   FD    G+  A QR       IC  L+ KEG  R  LMGKRV
Sbjct: 295  AHIITEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 354

Query: 388  NYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY 447
            +++ R+VI+PDP + ++E+G+P   AL LTYPE VTP+N+ +L++ +  G   HP     
Sbjct: 355  DFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGP--HP----- 407

Query: 448  LDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVN 506
                     PP K     I R+ D  R  +    K SD   E G  V RHL DGD VL N
Sbjct: 408  ---------PPGKTGAKYIIRE-DGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFN 457

Query: 507  RQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNI 566
            RQP+LHK SIM H ++++    T R++ +  S YNADFDGDEMN+H PQ   +RAE   +
Sbjct: 458  RQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLEL 516

Query: 567  VNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFT 626
            +      V P +  P+  ++QD ++    +TK+DT + +D F  +L            F 
Sbjct: 517  MMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILM-------WWQDFD 569

Query: 627  GKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQ 686
            GK              +P  PAI KP P+WTGKQV   +                  +P+
Sbjct: 570  GK--------------IP-APAILKPRPIWTGKQVFNLI------------------IPK 596

Query: 687  DFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKE 746
                 RF+A    +    +KG ++  + M +                             
Sbjct: 597  QINLIRFSAWHSEE----EKGFITPGDTMVR----------------------------- 623

Query: 747  LSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
                   I K +L+ G + K         L+H + E  G + A   L     L   +L  
Sbjct: 624  -------IEKGELLSGTLCKKSLGTGTGSLIHIIWEEVGPDAARKFLGHTQWLVNYWLLQ 676

Query: 805  HGFTCGVDDLL-------ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLK 857
            +GF+ G+ D +        + D   + K+ +   +E+ K+ H + LE E G  +      
Sbjct: 677  NGFSIGIGDTIADASTMQTINDTICKAKDEV---KELIKKAHEKQLEAEPGRTM------ 727

Query: 858  SEIEKAMRGGGDAAVAYFDMKMTSQLNK--HTSSSVINELLSEGLLKPTGKNWISLMTTS 915
                          +  F+ ++   LNK    + S   + LSE        N +  M T+
Sbjct: 728  --------------MESFENRVNQVLNKARDDAGSSAQKSLSES-------NNLKAMVTA 766

Query: 916  GAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLR 975
            G+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL 
Sbjct: 767  GSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLT 826

Query: 976  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYG 1035
            PQE++FH M GREGL+DTAVKTS +GY+QR L+K +E + + YD +VR++ G ++QF YG
Sbjct: 827  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 886

Query: 1036 EDGVDV 1041
            EDG+D 
Sbjct: 887  EDGMDA 892



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 56/73 (76%), Gaps = 1/73 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F+ SL  PGE +G +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ +A
Sbjct: 1067 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1126

Query: 1191 SKDIKTPVITCPL 1203
             K IKTP ++  L
Sbjct: 1127 KK-IKTPSLSVYL 1138



 Score = 47.8 bits (112), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 14/121 (11%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREV------ 54
           C+TC      CPGHFGH++L  P+++      + ++++ +CF C    A   E       
Sbjct: 66  CETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETKFKQAL 125

Query: 55  -----EKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNV 109
                +  ++++    K   + A   DLD+  + +   D  V  +  C    P    D +
Sbjct: 126 KIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQDT---DEPVKKRGGCGAQQPNITVDGM 182

Query: 110 R 110
           +
Sbjct: 183 K 183


>gi|425770649|gb|EKV09117.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
 gi|425771955|gb|EKV10383.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
          Length = 1733

 Score =  330 bits (847), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 225/676 (33%), Positives = 323/676 (47%), Gaps = 131/676 (19%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  RQ LMGKRV+++ R+VI+ DP L ++E+G+P   A  LTYPE VTPWN+ KL
Sbjct: 340  LKGKEGRLRQNLMGKRVDFSARTVITGDPNLRLDEVGVPYSTARILTYPEVVTPWNIEKL 399

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
            +  I NG  IHPGA  Y+ + +  R+      R    + L                   G
Sbjct: 400  QKLIANGPNIHPGA-RYIVRDNGERIDLRHAKRAGAQQLL------------------YG 440

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RHL +GD +L NRQP+LHK S+M H VRV+    T RM+ +  S YNADFDGDEMN
Sbjct: 441  WKVERHLDNGDYILFNRQPSLHKESMMGHRVRVMPF-STFRMNLSVTSPYNADFDGDEMN 499

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E +RAE   +       V P    PL  ++QD +     + ++DTFL +D+   
Sbjct: 500  LHVPQGEEARAELAELTLVPKNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKDQVMN 559

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            L+                    + +   +  + P  PAI KP P WTGKQ+I+       
Sbjct: 560  LM--------------------LWVPDWDGAIPP--PAILKPRPRWTGKQMISMAFP--- 594

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                                                   S  N +  DK        +G 
Sbjct: 595  ---------------------------------------SGLNLLRVDK--------DGS 607

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAG 788
            P  EK +         LS+  LLI+   L+ G++ K        G++HT+   YG +T  
Sbjct: 608  PLAEKFS--------PLSDGGLLIHGGQLMYGMLSKKTVGASGGGVIHTIFNEYGPDTCV 659

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALE 844
               S    +   +L  +GF+ G+ D +     +   E   +N     EEI        LE
Sbjct: 660  KFFSGAQTIVGYWLLHNGFSIGIGDTIPDQHTINKIEEAVRNRKQEVEEITASATENTLE 719

Query: 845  LEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPT 904
               G  +     +S++ +A+    D A    + K    LN                    
Sbjct: 720  ALPGMNVRE-TFESKVSRALNNARDEAGDATE-KSLKDLN-------------------- 757

Query: 905  GKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGG 964
              N I  M  SG+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D++P + G
Sbjct: 758  --NAIQ-MARSGSKGSAINISQMTALVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRG 814

Query: 965  FIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD 1024
            F+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD +VR+
Sbjct: 815  FVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRN 874

Query: 1025 ADGSIVQFCYGEDGVD 1040
            + G I+QF YGEDG+D
Sbjct: 875  SLGDIIQFIYGEDGLD 890



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 62/82 (75%), Gaps = 1/82 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            N++A Q  L  ++ +F  + A PGE VG+LA+QS+GEP+TQMTLNTFH AG    NVTLG
Sbjct: 1054 NKLAFQHVLGAIESRFARAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLG 1113

Query: 1180 IPRLQEILTIASKDIKTPVITC 1201
            +PRL+EIL +A+ +IKTP +T 
Sbjct: 1114 VPRLKEILNVAT-NIKTPSMTV 1134



 Score = 49.3 bits (116), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 29/50 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
           C+TC +    CPGHFGHI+L  PV++      +  LL+ +C  C   KA+
Sbjct: 69  CETCEEGPKECPGHFGHIELASPVFHIGFLTKIKKLLETVCHNCGKIKAN 118


>gi|16494|emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
          Length = 1860

 Score =  330 bits (846), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 238/728 (32%), Positives = 352/728 (48%), Gaps = 127/728 (17%)

Query: 337  IVARWMNLQQ-SVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNY 389
            I++R+  L Q  +   FD    G+  A Q+       IC  L+ KEG  R  LMGKRV++
Sbjct: 292  IISRFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 351

Query: 390  ACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGAT--HY 447
            + R+VI+PDP + ++E+G+P   AL LTYPE VTP+N+ +L++ +  G    PG T   Y
Sbjct: 352  SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKY 411

Query: 448  L-----DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNE-----FEGKMVYRHL 497
            +      +L    L  +    + +G +      +I    K    E          V RHL
Sbjct: 412  IIRDDGQRLDLRYLKKSSDQHLELGYRYVLLSYSIHSTHKRLFLEVVIFMLSWSQVERHL 471

Query: 498  QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
            QDGD VL NRQP+LHK SIM H +R++    T R++ +  S YNADFDGDEMN+H PQ  
Sbjct: 472  QDGDFVLFNRQPSLHKMSIMGHRIRIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 530

Query: 558  VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
             +RAE   ++      V P    P+  ++QD ++    +TK+DTF+ +D F   L     
Sbjct: 531  ETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLM---- 586

Query: 618  SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
                   F GK              +P  PAI KP PLWTGKQ    V N I        
Sbjct: 587  ---WWEDFDGK--------------VPA-PAILKPRPLWTGKQ----VFNLI-------- 616

Query: 678  VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEA 737
                  +P+     R++A                    H D      E     PG+ +  
Sbjct: 617  ------IPKQINLLRYSA-------------------WHADT-----ETGFITPGDTQ-- 644

Query: 738  EKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALS 795
                          + I + +L+ G + K     ++  LVH + E  G + A   L    
Sbjct: 645  --------------VRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQ 690

Query: 796  RLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIK 855
             L   +L  +GFT G+ D  I      E+ N    + +   +  +   +   G E+DP  
Sbjct: 691  WLVNYWLLQNGFTIGIGDT-IADSSTMEKINETISNAKTAVKDLIRQFQ---GKELDP-- 744

Query: 856  LKSEIEKAMRGGGDAAVAYFDMKMTSQLNK--HTSSSVINELLSEGLLKPTGKNWISLMT 913
               E  + MR         F+ ++   LNK    + S   + L+E        N +  M 
Sbjct: 745  ---EPGRTMRDT-------FENRVNQVLNKARDDAGSSAQKSLAE-------TNNLKAMV 787

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
            T+G+KGS +N  Q+++ +GQQ +EGKR+P    G+TLP F   D+ P + GF+ + +L G
Sbjct: 788  TAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRG 847

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            L PQE++FH M GREGL+DTAVKTS +GY+QR L+K +E + + YD +VR++ G ++QF 
Sbjct: 848  LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL 907

Query: 1034 YGEDGVDV 1041
            YGEDG+D 
Sbjct: 908  YGEDGMDA 915



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 55/73 (75%), Gaps = 1/73 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F+ SL  PGE +G + +QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ +A
Sbjct: 1090 IESRFLQSLVAPGEMIGCVPAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1149

Query: 1191 SKDIKTPVITCPL 1203
             K IKTP ++  L
Sbjct: 1150 -KRIKTPSLSVYL 1161



 Score = 46.2 bits (108), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKA 49
           C+TC      CPGHFG+++L  P+Y+      + ++++ +CF C    A
Sbjct: 66  CETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILA 114


>gi|297798336|ref|XP_002867052.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297312888|gb|EFH43311.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1839

 Score =  330 bits (846), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 230/680 (33%), Positives = 332/680 (48%), Gaps = 126/680 (18%)

Query: 367  ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
            IC  L+ KEG  R  LMGKRV+++ R+VI+PDP + ++E+G+P   AL LTYPE VTP+N
Sbjct: 337  ICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYN 396

Query: 427  VVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN 486
            + +L++ +  G   HP              PP K     I R  D  R  +    K SD 
Sbjct: 397  IERLQELVDYGP--HP--------------PPGKTGAKYIIRD-DGQRLDLRYLKKSSDQ 439

Query: 487  EFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
              E G  V RHLQDGD VL NRQP+LHK SIM H +R++    T R++ +  S YNADFD
Sbjct: 440  HLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMP-YSTFRLNLSVTSPYNADFD 498

Query: 546  GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
            GDEMN+H PQ   +RAE   ++      V P    P+  ++QD ++    +TK+DTF+ +
Sbjct: 499  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEK 558

Query: 606  DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
            D F   L            F GK              +P  PAI KP PLWTGKQ    V
Sbjct: 559  DVFMNTLM-------WWEDFDGK--------------VPA-PAILKPRPLWTGKQ----V 592

Query: 666  LNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKE 725
             N I              +P+     R++A                    H D      E
Sbjct: 593  FNLI--------------IPKQINLLRYSA-------------------WHADT-----E 614

Query: 726  VVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYG 783
                 PG+ +                + I + +L+ G + K     ++  LVH + E  G
Sbjct: 615  TGFITPGDTQ----------------VRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVG 658

Query: 784  SNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL 843
             + A   L     L   +L  +GFT G+ D  I      E+ N    + +   +  +   
Sbjct: 659  PDAARKFLGHTQWLVNYWLLQNGFTIGIGDT-IADSSTMEKINETISNAKTAVKDLIRQF 717

Query: 844  ELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNK--HTSSSVINELLSEGLL 901
            + +        KL  E  + M          F+ ++   LNK    + S   + L+E   
Sbjct: 718  QEK--------KLDPEPGRTM-------TETFENRVNQVLNKARDDAGSSAQKSLAE--- 759

Query: 902  KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 961
                 N +  M T+G+KGS +N  Q+++ +GQQ +EGKR+P    G+TLP F   D+ P 
Sbjct: 760  ----TNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPE 815

Query: 962  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1021
            + GF+ + +L GL PQE++FH M GREGL+DTAVKTS +GY+QR L+K +E + + YD +
Sbjct: 816  SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGT 875

Query: 1022 VRDADGSIVQFCYGEDGVDV 1041
            VR++ G ++QF YGEDG+D 
Sbjct: 876  VRNSLGDVIQFLYGEDGMDA 895



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 56/73 (76%), Gaps = 1/73 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F+ SL  PGE +G +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ +A
Sbjct: 1070 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1129

Query: 1191 SKDIKTPVITCPL 1203
             K IKTP ++  L
Sbjct: 1130 -KRIKTPSLSVYL 1141



 Score = 48.9 bits (115), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKA 49
           C+TC      CPGHFGH++L  P+Y+      + ++++ +CF C    A
Sbjct: 66  CETCMANMAECPGHFGHLELAKPMYHVGFMKTVLSIMRCVCFNCSKILA 114


>gi|116201487|ref|XP_001226555.1| hypothetical protein CHGG_08628 [Chaetomium globosum CBS 148.51]
 gi|88177146|gb|EAQ84614.1| hypothetical protein CHGG_08628 [Chaetomium globosum CBS 148.51]
          Length = 1290

 Score =  330 bits (845), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 244/788 (30%), Positives = 380/788 (48%), Gaps = 125/788 (15%)

Query: 266  SDMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA 324
            +D +  G     G    FL   L  PPI  R      ++  E   T  LS+++    +L 
Sbjct: 118  TDCELLGLDPSEGRPDMFLWQYLPAPPICIRPSVAQENASNEDDITSKLSEIILYAGHLR 177

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVNVLFD----GKNAAGQRDMASGICQLLEKKEGLFRQ 380
             + + +     VI+ +W  LQ  V +  +    G    G      G CQ L+ K+G FR 
Sbjct: 178  ES-LKKGVALPVIMEQWEFLQLQVGMYVNSDVPGLYQPGFGKPIRGFCQRLKGKQGRFRG 236

Query: 381  KLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEI 440
             L GKRV+++ R+VISPDP L++ ++ +P   A  LTYPERV   N+ KLR+ +I G  I
Sbjct: 237  NLSGKRVDFSGRTVISPDPNLSIEQVAVPELVAKNLTYPERVNHANIEKLRERVITGPNI 296

Query: 441  HPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDG 500
             PGA   + K                G K +   G      K ++N   G +V RHL+D 
Sbjct: 297  WPGAQGIIKK---------------DGAKYNLKIGNESLREKHANNLEHGDVVERHLEDN 341

Query: 501  DVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSR 560
            DVVL NRQP+LHK SIM+H+ ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +R
Sbjct: 342  DVVLFNRQPSLHKLSIMSHLAKI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEAR 400

Query: 561  AEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSS 620
            AEA N++   +  V P NG+P+ +  QD I +A LL+ KD F +R  F  +         
Sbjct: 401  AEAINLMGVKHNLVTPKNGEPIIAATQDFITAAYLLSSKDIFFDRASFTYVC-------- 452

Query: 621  GLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVER 680
                       ++L+  +  E+ P  PAI KP  LWTGKQ+   ++      RP      
Sbjct: 453  ----------TQMLLGDTHLELPP--PAIIKPRALWTGKQIFNVLM------RP------ 488

Query: 681  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKM-HKDKSGKKKEVVEGKPGEEKEAEK 739
                           +K+S    N    L   NK+  K K G+  ++             
Sbjct: 489  ---------------NKESPVLVN----LEAKNKVFFKKKDGQIPDM------------- 516

Query: 740  NKSKEKELSEEKLLIYKNDLVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSR 796
                  ++ +  L++  ++++ G +DKA         + + +   +G + A   ++ LS+
Sbjct: 517  ------DIDDAFLVVRNSEVMCGRMDKATVGGGKKNSVFYVILRDFGPDHAAVAMNRLSK 570

Query: 797  LFTVFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID 852
            L    L + GF+ GV D+     +   K +  ++  +  +++ +      LE   G    
Sbjct: 571  LCARTLSLRGFSIGVGDVWPSGSLTSHKAQLVEDAYNKCDDLIETYRQGKLEKAPGC--- 627

Query: 853  PIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLM 912
               L+  +E ++ G            + S++ +   +  +  L        +  N   +M
Sbjct: 628  --NLEETLENSISG------------ILSKVRQQAGNYCVGNL--------SKNNAPLIM 665

Query: 913  TTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLT 972
              SG+KGS +N  Q+ + +GQQ + GKRVP     ++LP FH     P + GF+ + F T
Sbjct: 666  AKSGSKGSDINVAQMVACVGQQIIGGKRVPDGFQDRSLPHFHKNARQPPSKGFVRNSFYT 725

Query: 973  GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQF 1032
            GL P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR ++G IVQF
Sbjct: 726  GLVPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSEGGIVQF 785

Query: 1033 CYGEDGVD 1040
             YG D +D
Sbjct: 786  QYGADRLD 793



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 58/84 (69%), Gaps = 1/84 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            +E   + F+++  HK+  +  +PG  VG + +QS+GEP TQMTL TFH AG   M++T G
Sbjct: 988  SERTLRQFIQMCLHKYKKARVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQG 1047

Query: 1180 IPRLQEILTIASKDIKTPVITCPL 1203
            +PR++EI+  ASK I TPVI+C L
Sbjct: 1048 VPRIKEIIN-ASKTISTPVISCEL 1070


>gi|83320434|gb|ABC02844.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
          Length = 1015

 Score =  329 bits (844), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 249/833 (29%), Positives = 389/833 (46%), Gaps = 160/833 (19%)

Query: 231  FKKQKDLFSG-------PLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFF 283
            FK  K  F G       PL PS V  I++++ +          D++  G   +     + 
Sbjct: 119  FKNGKSYFKGAMPEDKQPLTPSQVHQILKRITD---------EDLEDMGLSAEFARPDWM 169

Query: 284  LGVVLVPPIKFRLPS--KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV-IVAR 340
            +  VL  P     PS    G S  E   T  L+ +L+AN+   N    + + A V ++  
Sbjct: 170  IITVLPVPPPPVRPSIQMDGSSRGEDDLTHKLADILKANV---NVKRCETEGAPVHVIDE 226

Query: 341  WMNLQQSVNVLFDGKNAAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYACR 392
            +  L Q     +   + AGQ        R + S I   L+ KEG  R  LMGKRV+++ R
Sbjct: 227  FEQLLQFHVATYMDNDIAGQPQALQKSGRPLKS-IRARLKGKEGRLRGNLMGKRVDFSAR 285

Query: 393  SVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLS 452
            +VI+ DP L+++E+G+P   A  LT+PE VTP+N+ ++++ + NG   HPGA + +    
Sbjct: 286  TVITGDPNLSIDEVGVPRSIARNLTFPEMVTPYNIERMQELVRNGPNEHPGAKYVIR--- 342

Query: 453  TMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLH 512
                          G ++D       +   D   ++ G  V RHL +GDVV+ NRQP+LH
Sbjct: 343  ------------DTGERIDLRYH---KRAGDIPLQY-GYKVERHLNNGDVVIFNRQPSLH 386

Query: 513  KPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQ 572
            K S+M H VRV+    T R++ +  S YNADFDGDEMN+H PQ E ++AE   I     Q
Sbjct: 387  KMSMMGHKVRVMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETKAEIKEICMVPKQ 445

Query: 573  YVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQR 632
             + P +  P+  ++QD +      TK+D F+++     +L         +  + G     
Sbjct: 446  IISPQSNKPVMGIVQDTLCGIRKFTKRDCFVDKALVMNILM-------WVADWDG----- 493

Query: 633  VLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 692
                     V+P  PAI KP+PLWTGKQ++T +                  +P++     
Sbjct: 494  ---------VIP-TPAILKPQPLWTGKQLVTMI------------------VPKNINCIT 525

Query: 693  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL 752
            +++    D K +                          PG+ K                +
Sbjct: 526  YHSAHPDDEKSDI------------------------SPGDTK----------------V 545

Query: 753  LIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
            ++   +L+ G++ K     ++ G VH     +G   A    S    +   +L  HGF+ G
Sbjct: 546  VVENGELLSGIVCKKTVGASNGGWVHVAMNEHGPEVAKKFFSGAQAVVNYWLLQHGFSIG 605

Query: 811  VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
            + D +            ++ +++    + L A   +D  E  P              G  
Sbjct: 606  IGDTIADGQTTEHITETINSAKQRVSEIILSA--QQDTLECAP--------------GMT 649

Query: 871  AVAYFDMKMTSQLNK---HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQI 927
                F+ K+  +LN+   H+  S    L  E        N +  M  SG+KGS +N  Q+
Sbjct: 650  IRETFENKVNRELNRARDHSGRSAEKSLKEE--------NNVKQMVVSGSKGSFINISQM 701

Query: 928  SSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGR 987
            S+ +GQQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL PQE+YFH M GR
Sbjct: 702  SACVGQQNVEGKRIPFGFKFRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFYFHAMGGR 761

Query: 988  EGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            EGL+DTAVKT+ +GY+QR L+K LE + + YD +VR++ G+I+QFCYGEDG+D
Sbjct: 762  EGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGNIIQFCYGEDGMD 814


>gi|344305554|gb|EGW35786.1| DNA-directed RNA polymerase III subunit C1 [Spathaspora passalidarum
            NRRL Y-27907]
          Length = 1445

 Score =  329 bits (844), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 229/762 (30%), Positives = 366/762 (48%), Gaps = 115/762 (15%)

Query: 286  VVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANI---YLANAYVNQPDNAKVIVARWM 342
            V + P +     S   D  ++  + V  S +++A I      N  + Q D  ++ VA ++
Sbjct: 265  VCIRPSVMMDAQSNEDDLTVKLTEIVWTSSLIRAGIEKGISINNLMEQWDYLQLSVAMYI 324

Query: 343  NLQQSVNVLFDGKNAAGQRDM-ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYL 401
            N   +   L     A  +      G CQ L+ K+G FR  L GKRV+++ R+VISPDP L
Sbjct: 325  NSDSANPALLPNAGAGAKSAKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNL 384

Query: 402  AVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKK 461
             ++E+ +P   A  LTYPE+ T +N  KL+  I  G ++HPGA +       M+     K
Sbjct: 385  KIDEVAVPDRVAKVLTYPEKCTRYNFKKLQKLIRAGPDVHPGANY------IMKQNELAK 438

Query: 462  MRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVV 521
              +  G +   ++   +           G +V RH++DGDVVL NRQP+LH+ SI++H  
Sbjct: 439  RNLRFGNREILAKNLRI-----------GDVVERHIEDGDVVLFNRQPSLHRLSILSHYA 487

Query: 522  RVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDP 581
            ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA N++   N  + P +G+P
Sbjct: 488  KI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEP 546

Query: 582  LRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQE 641
            + +  QD I  + L++ KD+F +R  F QLL    + S     F   P            
Sbjct: 547  IIAATQDFITGSYLISHKDSFFDRASFVQLL---SMMSDADVQFDLPP------------ 591

Query: 642  VLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDR 701
                 P I+KP  LWTGKQV + ++                                   
Sbjct: 592  -----PTIFKPVMLWTGKQVFSLLI----------------------------------- 611

Query: 702  KKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVR 761
                  K +K + +  +   K K  +    G   E   N        +  ++I  + ++ 
Sbjct: 612  ------KPNKKSNVIINLDAKNKTFIPPAKGLPSEMSPN--------DGFVIIRGSQILS 657

Query: 762  GVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILK 818
            G++DK+   D   + + +T+   YG   A + ++ +++L   +L   GF+ G++D  +  
Sbjct: 658  GLMDKSTLGDGKKHSVFYTILRDYGPQEAASAMNRMAKLCARYLGNRGFSIGIND--VTP 715

Query: 819  DKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMK 878
            + + ++K  L   +   K   L  L      E  P   + +  +A  GG           
Sbjct: 716  ETKLKQKKELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGG----------- 764

Query: 879  MTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEG 938
            + S++ +      I EL S         N   +M T G+KGS +N  Q+ + +GQQ + G
Sbjct: 765  LLSKVREEVGEECIRELDS--------MNAPLIMATCGSKGSTLNVSQMVAVVGQQIISG 816

Query: 939  KRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTS 998
             RVP     ++LP F      P++ GF+ + F +GL P E+ FH ++GREGLVDTAVKT+
Sbjct: 817  HRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFYSGLTPPEFLFHAISGREGLVDTAVKTA 876

Query: 999  RSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             +GY+ R L+K+LE L   YD +VR++   IVQF YG DG+D
Sbjct: 877  ETGYMSRRLMKSLEDLSAQYDNTVRNSSNGIVQFTYGGDGLD 918



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 55/80 (68%), Gaps = 1/80 (1%)

Query: 1125 QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1184
            + FL+   +K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   MNVTLG+PR++
Sbjct: 1059 EKFLEQCLYKYSRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1118

Query: 1185 EILTIASKDIKTPVITCPLL 1204
            EI+  ASK I TP+I   L+
Sbjct: 1119 EIIN-ASKTISTPIINAVLV 1137



 Score = 41.6 bits (96), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC      C GHFGHI L +PV++   F  +  +L+ IC  C
Sbjct: 67  CSTCHGNLASCHGHFGHIRLALPVFHVGYFKSIIQVLQCICKNC 110


>gi|67612875|ref|XP_667260.1| DNA-directed RNA polymerase II/III subunit [Cryptosporidium hominis
            TU502]
 gi|54658380|gb|EAL37032.1| DNA-directed RNA polymerase II/III subunit [Cryptosporidium hominis]
          Length = 1869

 Score =  329 bits (844), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 240/775 (30%), Positives = 374/775 (48%), Gaps = 144/775 (18%)

Query: 289  VPPIKFRLPSKGGDS-VMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQS 347
            VPP   R     G+S   E   TV+LS++   N  +  + +        ++  W  LQ  
Sbjct: 251  VPPNCIRPSVTMGESGSNEDDLTVILSEITDLN-NIIKSQMKSGFQTFQLLGNWEFLQLQ 309

Query: 348  VNVLFDGKNAAGQRDMAS--------GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDP 399
               L +       + +AS        G+CQ L+ KEG FR  L GKRV+++ R+VISPDP
Sbjct: 310  CTRLINADAPGVNQLLASKNIPKAGRGVCQRLKGKEGRFRGNLSGKRVDFSGRTVISPDP 369

Query: 400  YLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPN 459
             + V+E+ +P   A +LTYPERV   N+  LR++++NG +I PGA  Y+ K +  +    
Sbjct: 370  NIEVDEVVVPMIIAKKLTYPERVNAINIDSLREAVLNGHDIWPGAC-YVYKSNGSKSSLR 428

Query: 460  KKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAH 519
               R  +  +L+                  G +V RH++ GD+VL NRQP+LH+ SIM+H
Sbjct: 429  YANRRVVSERLEI-----------------GDIVERHMKTGDIVLFNRQPSLHRLSIMSH 471

Query: 520  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNG 579
             V V+   +T R +   C+ YNADFDGDEMN+H PQ+E++R+E+ +++   N  V P NG
Sbjct: 472  KVVVMPW-RTFRFNECACAPYNADFDGDEMNLHLPQNELARSESKHLMGLMNNLVTPRNG 530

Query: 580  DPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSE 639
            +PL +  QD ++   +LT +D FL RD+F Q  Y    S+  +                 
Sbjct: 531  EPLIAATQDFLLGMYVLTGRDIFLTRDQFSQ--YCCHFSNGQI----------------P 572

Query: 640  QEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQS 699
             E+ P  P I KP  LWTGKQV   +L      RP                         
Sbjct: 573  MELPP--PTILKPVELWTGKQVFNMIL------RP------------------------- 599

Query: 700  DRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDL 759
                N+  ++  + ++ +     K ++ +  P                +E  +++  ++L
Sbjct: 600  --NSNENERIDVSFELKERDYDSKSDLKDLCP----------------NEGYVVVRHSEL 641

Query: 760  VRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL- 815
            + G I K      +  GL   +     +  +   +  +SR  + +L   G T G+DD+  
Sbjct: 642  LAGAIGKKVLGGGSKEGLFFYILLENNAKKSSECMGRISRFVSRYLANKGMTIGIDDVTP 701

Query: 816  ----------ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMR 865
                      +L+D  +  ++ ++  E+ GK      L LED  E   +K+K  ++    
Sbjct: 702  NAELLVAKKNLLEDGYQRVQDEINSYEK-GKLTPHPGLSLEDTLE---LKVKKILDDIRN 757

Query: 866  GGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQ 925
              G A+              H S            L P+ K    LM  SGAKG  +N  
Sbjct: 758  EAGKAS--------------HIS------------LPPSNKPL--LMYLSGAKGQLINIA 789

Query: 926  QISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMA 985
            Q+ + +GQQ + G+R+    + +TLP F       R+ GF+ + F +GL+P E++FH M+
Sbjct: 790  QMVACVGQQNVAGQRIQNGFTNRTLPHFKMNCVDGRSRGFVGNSFFSGLQPDEFFFHTMS 849

Query: 986  GREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            GREGLVDTAVKT+ +GY+QR L+K LE L I YD +VR +DG I+QF YG+DG++
Sbjct: 850  GREGLVDTAVKTAETGYMQRRLVKALEDLCIKYDQTVRTSDGQIIQFIYGDDGLN 904



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 57/78 (73%), Gaps = 1/78 (1%)

Query: 1126 DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1185
            +F+K    K++ ++ +PGE VG +A+QS+GEP TQMTL TFH AG   MNVTLG+PR++E
Sbjct: 1442 EFIKASWSKYMKAITEPGEAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKE 1501

Query: 1186 ILTIASKDIKTPVITCPL 1203
            I+  A+K I TP+I   L
Sbjct: 1502 IINAATK-ILTPIIEAKL 1518



 Score = 42.7 bits (99), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 32/62 (51%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C +CG     C GH+G+IDL  PV++   F  LY +L  IC  C  F     E  + + K
Sbjct: 90  CSSCGGTLKTCGGHWGYIDLQQPVFHVGYFKHLYGVLCCICKSCGAFLLKGEEKRQHLAK 149

Query: 61  LE 62
           L+
Sbjct: 150 LK 151


>gi|154282795|ref|XP_001542193.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
            capsulatus NAm1]
 gi|150410373|gb|EDN05761.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
            capsulatus NAm1]
          Length = 1747

 Score =  329 bits (844), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 224/680 (32%), Positives = 329/680 (48%), Gaps = 138/680 (20%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  RQ LMGKRV+++ R+VI+ DP L+++E+G+P   A  LTYPE VTP+N+ KL
Sbjct: 346  LKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKL 405

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE- 489
             + + NG +IHPGA + +                S G ++D         G    N  + 
Sbjct: 406  GELVDNGPDIHPGARYVIR---------------STGERIDLRH----HKGGGGRNFLQY 446

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G  V RH+ DGDV+L NRQP+LHK S+M H +RV+    T R++ +  + YNADFDGDEM
Sbjct: 447  GWRVERHIVDGDVILFNRQPSLHKESMMGHRIRVMP-YSTFRLNLSVTTPYNADFDGDEM 505

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ E +RAE   +     Q V P    PL  ++QD +     + ++D FL +++  
Sbjct: 506  NLHVPQSEEARAELSQLCMVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVM 565

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
             +L                     L       V+P  PAI KP P WTGKQ+I+ VL   
Sbjct: 566  NIL---------------------LWVPDWDGVIPQ-PAILKPRPRWTGKQMISMVL--- 600

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
                PP     G  L                R   DK  LS+                  
Sbjct: 601  ----PP-----GLNL---------------LRVDRDKAPLSE------------------ 618

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTA 787
                         K   L++  LL++  +L+ G+  K        G++HT+   YG  TA
Sbjct: 619  -------------KFSPLADGGLLVHGGELMYGMFSKKTVGATGGGVIHTIFNEYGPETA 665

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLI-------LKDKERERKNHLHGSEEIGKRVHL 840
                +    +   +L  HGF+ G+ D +        +++  R RK  +   +EI      
Sbjct: 666  MNFFNGAQTVVNYWLLHHGFSIGIGDTIPDLATIEKIEEAVRVRKEEV---DEITASATD 722

Query: 841  EALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGL 900
              LE   G  +     +S++ +A+    D A    + K    LN                
Sbjct: 723  NTLEPLPGMNVRET-FESKVSRALNNARDEAGTETE-KSFKDLNNAVQ------------ 768

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
                       M  SG+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D++P
Sbjct: 769  -----------MARSGSKGSIINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSP 817

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
             + GF+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD 
Sbjct: 818  ESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDG 877

Query: 1021 SVRDADGSIVQFCYGEDGVD 1040
            +VR++ G +VQF YGEDG+D
Sbjct: 878  TVRNSLGDVVQFLYGEDGLD 897



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 62/82 (75%), Gaps = 1/82 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            N +A Q  L  ++ +F  ++A PGE VG+LA+QS+GEP+TQMTLNTFH AG    NVTLG
Sbjct: 1061 NRLAFQHVLGAIESRFSKAMANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLG 1120

Query: 1180 IPRLQEILTIASKDIKTPVITC 1201
            +PRL+EIL +A+ +IKTP +T 
Sbjct: 1121 VPRLKEILNVAT-NIKTPSMTV 1141



 Score = 49.7 bits (117), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVE--KCV 58
           C TC +    CPGHFGHI+L  PV++      +  LL+ +C  C   KA+  + +  + +
Sbjct: 69  CATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTTDQKYLEAL 128

Query: 59  RKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWT 118
           R  +   + D I   S D+ +     +P+D +   K     V   G   N++    +E  
Sbjct: 129 RFRDPKRRFDAIWRLSKDVLICEADPSPDDDEPFAKEPSKPVRSHGGCGNIQPQIRKEGI 188

Query: 119 SL 120
           SL
Sbjct: 189 SL 190


>gi|397135822|gb|AFO11406.1| RNA polymerase I, partial [Ascoidea rubescens]
          Length = 872

 Score =  328 bits (842), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 234/768 (30%), Positives = 371/768 (48%), Gaps = 154/768 (20%)

Query: 292  IKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVL 351
            I F   ++G D +     T  L+ +L+A+I +    ++   + + ++  + NL Q     
Sbjct: 63   IAFNESARGEDDL-----TFKLADILKASINVQKLELD--GSPQHVIIEFENLLQYHVAT 115

Query: 352  FDGKNAAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
            +   + AGQ        R + S I   L+ KEG  R  LMGKRV+++ R+VIS DP L +
Sbjct: 116  YMDNDIAGQPLAKHKSGRAIKS-IRARLKSKEGRVRGNLMGKRVDFSARTVISGDPNLDL 174

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMR 463
            +++G+P   A  LTYPE VTP+N+ +L + + NG   HPGA H +               
Sbjct: 175  DQVGVPRSIARILTYPEIVTPYNIHRLTEYVRNGPNEHPGAKHVIR-------------- 220

Query: 464  ISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
               G ++D          K  D + + G  V RHL D D VL NRQP+LHK S+M H  +
Sbjct: 221  -DTGDRIDLKYHK-----KAGDIQLQYGWRVERHLMDDDPVLFNRQPSLHKMSMMCHRAK 274

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            ++    T R++ +  S YNADFDGDEMN+H PQ   +RAE  N+V    Q V P +  P+
Sbjct: 275  IMP-YSTFRINLSVTSPYNADFDGDEMNLHVPQSAETRAELQNLVAVPLQIVSPQSNKPV 333

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
              ++QD +     +T +D F+  D+  Q+ Y        +  + G              +
Sbjct: 334  MGIVQDTLCGIRKMTLRDIFIEYDQVMQICY-------WVKDWNG--------------I 372

Query: 643  LPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRK 702
            +P  PAI KP+PLWTGKQ+++                    +P+     RF+ +K +   
Sbjct: 373  MP-PPAILKPKPLWTGKQLLSLA------------------IPEGIHLLRFD-EKTTLLS 412

Query: 703  KNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRG 762
             ND G                                            +LI   +++ G
Sbjct: 413  PNDDG--------------------------------------------MLIINGEIMFG 428

Query: 763  VIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDK 820
            +++K      + GL+HTV    GS     L   + ++   +L  +GF+ G+ D +   D 
Sbjct: 429  IVNKKTVGATNGGLIHTVMREKGSKACADLFGNIQKIVNYWLLHNGFSIGIGDTIADADT 488

Query: 821  ERERKNHLHGSEEIGKRVHLEA----LELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFD 876
             ++    +  +++  + + L+A    LELE G  +     +S++ + +    D A     
Sbjct: 489  MKKITTTIAEAKQKVQDLILDAQANRLELEPGMTLRE-SFESKVSRVLNQARDDA----- 542

Query: 877  MKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
                     H +   + EL           N +  M  SG+KGS +N  Q+S+ +GQQ +
Sbjct: 543  --------GHCAQMNLKEL-----------NNVKQMVVSGSKGSFINISQMSACVGQQIV 583

Query: 937  EGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVK 996
            EGKR+P   + +TLP F   D++P + GF+ + +L GL PQE++FH MAGREGL+DTAVK
Sbjct: 584  EGKRIPFGFADRTLPHFTKDDFSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVK 643

Query: 997  TSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT 1044
            T+ +GY+QR L+K LE + + YD + R++ G+I+QF YGEDG+D  Q 
Sbjct: 644  TAETGYIQRRLVKALEDIMVHYDGTTRNSVGAIIQFIYGEDGLDATQV 691


>gi|325090959|gb|EGC44269.1| RNA polymerase II largest subunit [Ajellomyces capsulatus H88]
          Length = 1747

 Score =  328 bits (842), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 223/680 (32%), Positives = 329/680 (48%), Gaps = 138/680 (20%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  RQ LMGKRV+++ R+VI+ DP L+++E+G+P   A  LTYPE VTP+N+ KL
Sbjct: 346  LKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKL 405

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE- 489
             + + NG +IHPGA + +                + G ++D         G    N  + 
Sbjct: 406  GELVDNGPDIHPGARYVIR---------------NTGERIDLRH----HKGGGGRNFLQY 446

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G  V RH+ DGDV+L NRQP+LHK S+M H +RV+    T R++ +  + YNADFDGDEM
Sbjct: 447  GWRVERHIVDGDVILFNRQPSLHKESMMGHRIRVMP-YSTFRLNLSVTTPYNADFDGDEM 505

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ E +RAE   +     Q V P    PL  ++QD +     + ++D FL +++  
Sbjct: 506  NLHVPQSEEARAELSQLCMVPLQIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVM 565

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
             +L                     L       V+P  PAI KP P WTGKQ+I+ VL   
Sbjct: 566  NIL---------------------LWVPDWDGVIPQ-PAILKPRPRWTGKQMISMVL--- 600

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
                PP     G  L                R   DK  LS+                  
Sbjct: 601  ----PP-----GLNL---------------LRVDRDKAPLSE------------------ 618

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTA 787
                         K   L++  LL++  +L+ G+  K        G++HT+   YG  TA
Sbjct: 619  -------------KFSPLADGGLLVHSGELMYGMFSKKTVGATGGGVIHTIFNEYGPETA 665

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLI-------LKDKERERKNHLHGSEEIGKRVHL 840
                +    +   +L  HGF+ G+ D +        +++  R RK  +   +EI      
Sbjct: 666  MNFFNGAQTVVNYWLLHHGFSIGIGDTIPDLATIEKIEEAVRVRKEEV---DEITASATD 722

Query: 841  EALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGL 900
              LE   G  +     +S++ +A+    D A    + K    LN                
Sbjct: 723  NTLEPLPGMNVRET-FESKVSRALNNARDEAGTETE-KSFKDLNNAVQ------------ 768

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
                       M  SG+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D++P
Sbjct: 769  -----------MARSGSKGSIINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSP 817

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
             + GF+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD 
Sbjct: 818  ESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDG 877

Query: 1021 SVRDADGSIVQFCYGEDGVD 1040
            +VR++ G +VQF YGEDG+D
Sbjct: 878  TVRNSLGDVVQFLYGEDGLD 897



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 62/82 (75%), Gaps = 1/82 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            N +A Q  L  ++ +F  ++A PGE VG+LA+QS+GEP+TQMTLNTFH AG    NVTLG
Sbjct: 1061 NRLAFQHVLGAIESRFSKAMANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLG 1120

Query: 1180 IPRLQEILTIASKDIKTPVITC 1201
            +PRL+EIL +A+ +IKTP +T 
Sbjct: 1121 VPRLKEILNVAT-NIKTPSMTV 1141



 Score = 49.7 bits (117), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVE--KCV 58
           C TC +    CPGHFGHI+L  PV++      +  LL+ +C  C   KA+  + +  + +
Sbjct: 69  CATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTTDQKYLEAL 128

Query: 59  RKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWT 118
           R  +   + D I   S D+ +     +P+D +   K     V   G   N++    +E  
Sbjct: 129 RFRDPKRRFDAIWRLSKDVLICEADPSPDDDEPFAKEPSKPVRSHGGCGNIQPQIRKEGI 188

Query: 119 SL 120
           SL
Sbjct: 189 SL 190


>gi|188532151|gb|ACD63087.1| RNA polymerase II largest subunit [Nicotiana tabacum]
          Length = 1010

 Score =  328 bits (842), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 236/725 (32%), Positives = 345/725 (47%), Gaps = 133/725 (18%)

Query: 344  LQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
            LQ  +   FD    G+  A QR       IC  L+ KEG  R  LMGKRV+++ R+VI+P
Sbjct: 225  LQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSARTVITP 284

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DP + ++++G+P   AL LTYPE VTP+N+ +L++ +  G   HP              P
Sbjct: 285  DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGP--HP--------------P 328

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSI 516
            P K     I R  D  R  +    K SD   E G  V RHL DGD VL NRQP+LHK SI
Sbjct: 329  PGKTGAKYIIRD-DGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSI 387

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            M H ++++    T R++ +  S YNADFDGDEMN+H PQ   +RAE   ++      V P
Sbjct: 388  MGHRIKIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 446

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
                P+  ++QD ++    +TK+DTF+ +D F  +L            F GK        
Sbjct: 447  QANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM-------WWEDFDGK-------- 491

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
                  +P  PAI KP PLWTGKQV   +                  +P+     R++A 
Sbjct: 492  ------VP-APAILKPRPLWTGKQVFNLI------------------IPKQINLLRYSAW 526

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
                   ++KG ++                    PG                + ++ I K
Sbjct: 527  HND----SEKGPIT--------------------PG----------------DTQVRIEK 546

Query: 757  NDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             +L+ G + K         L+H + E  G + A   L     L   +L  + F+ G+ D 
Sbjct: 547  GELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD- 605

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
              + D     K +   S    K   L     E   E +P              G   +  
Sbjct: 606  -TIADASTMEKINETISNAKSKVKELIKAAQEKQLEAEP--------------GRTMMES 650

Query: 875  FDMKMTSQLNK--HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
            F+ ++   LNK    + S   + LSE        N +  M T+G+KGS +N  Q+++ +G
Sbjct: 651  FENRVNQVLNKARDDAGSSAEKSLSES-------NNLKAMVTAGSKGSFINISQMTACVG 703

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL PQE++FH M GREGL+D
Sbjct: 704  QQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 763

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDA 1052
            TAVKTS +GY+QR L+K +E + + YD +VR++ G ++QF YGEDG+D        K D+
Sbjct: 764  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE-TQKLDS 822

Query: 1053 LAARE 1057
            L A++
Sbjct: 823  LKAKK 827


>gi|357483939|ref|XP_003612256.1| DNA-directed RNA polymerase [Medicago truncatula]
 gi|355513591|gb|AES95214.1| DNA-directed RNA polymerase [Medicago truncatula]
          Length = 1864

 Score =  328 bits (841), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 235/739 (31%), Positives = 354/739 (47%), Gaps = 134/739 (18%)

Query: 344  LQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
            LQ  +   FD    G   A QR       IC  L+ KEG  R  LMGKRV+++ R+VI+P
Sbjct: 324  LQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 383

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DP + ++++G+P   AL LTYPE VTP+N+ +L++ +  G   HP              P
Sbjct: 384  DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGP--HP--------------P 427

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSI 516
            P K     I R  D  R  +    K SD+  E G  V RHL DGD VL NRQP+LHK SI
Sbjct: 428  PGKTGAKYIIRD-DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSI 486

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            M H ++++    T R++ +  S YNADFDGDEMN+H PQ   +RAE   ++      V P
Sbjct: 487  MGHRIKIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 545

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
                P+  ++QD ++    +TK+DTF+++D F  +L            F GK        
Sbjct: 546  QANRPVMGIVQDSLLGCRKITKRDTFISKDVFMNILM-------WWEDFDGK-------- 590

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
                  +P  P I KPEPLWTGKQV   +                  +P+     R++  
Sbjct: 591  ------VP-APTILKPEPLWTGKQVFNLI------------------IPKQINLIRYS-- 623

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
              S   +N++G ++  + M +                                    I K
Sbjct: 624  --SWHNENERGPITPGDTMVR------------------------------------IEK 645

Query: 757  NDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             +L+ G + K         L+H + E  G + A   L     L   +L    F+ G+ D 
Sbjct: 646  GELLTGTLCKKTLGTGTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDT 705

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
            +            +  +++  K++  EA E          KL++E  + M          
Sbjct: 706  IADASTMETINQTISQAKDKVKQLIREAQEK---------KLEAEPGRTMMDS------- 749

Query: 875  FDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
            F+ ++   LN  +  + +   + LSE        N +  M T+G+KGS +N  Q+++ +G
Sbjct: 750  FENRVNQTLNRARDDAGNSAQKSLSES-------NNLKAMVTAGSKGSFINISQMTACVG 802

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL PQE++FH M GREGL+D
Sbjct: 803  QQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 862

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDA 1052
            TAVKTS +GY+QR L+K +E + + YD +VR++ G ++QF YGEDG+D        K D+
Sbjct: 863  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE-TQKLDS 921

Query: 1053 LAARERGRGRG-RNKFCDK 1070
            L  ++    R  R +F D+
Sbjct: 922  LKMKKTDFDRAFRYEFDDE 940



 Score = 83.2 bits (204), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 55/73 (75%), Gaps = 1/73 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F+ SL   GE +G +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ +A
Sbjct: 1086 IESRFLQSLVASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1145

Query: 1191 SKDIKTPVITCPL 1203
             K IKTP ++  L
Sbjct: 1146 -KRIKTPSLSVYL 1157



 Score = 45.1 bits (105), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 28/49 (57%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKA 49
           C+TC      CPGHFG+++L  P+++      + ++++ +CF C    A
Sbjct: 72  CETCTASMAECPGHFGYLELAKPMFHIGFLKTVLSIMRCVCFNCSKILA 120


>gi|16505|emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana]
          Length = 1841

 Score =  328 bits (840), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 230/681 (33%), Positives = 333/681 (48%), Gaps = 134/681 (19%)

Query: 367  ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
            IC  L+ KEG  R  LMGKRV+++ R+VI+PDP + ++E+G+P   AL LTYPE VTP+N
Sbjct: 337  ICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYN 396

Query: 427  VVKL-RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSD 485
            + +L R   I+ +E     T Y+                    + D  R  +    K SD
Sbjct: 397  IERLVRLVFISFSE-----TKYI-------------------IRDDGQRSDLRYLKKSSD 432

Query: 486  NEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADF 544
               E G  V RHLQDGD VL NRQP+LHK SIM H +R++    T R++ +  S YNADF
Sbjct: 433  QHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMP-YSTFRLNLSVTSPYNADF 491

Query: 545  DGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLN 604
            DGDEMN+H PQ   +RAE   ++      V P    P+  ++QD ++    +TK+DTF+ 
Sbjct: 492  DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIE 551

Query: 605  RDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITA 664
            +D F   L            F GK              +P  PAI KP PLWTGKQ    
Sbjct: 552  KDVFMNTLM-------WWEDFDGK--------------VPA-PAILKPRPLWTGKQ---- 585

Query: 665  VLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKK 724
            V N I              +P+     R++A                    H D      
Sbjct: 586  VFNLI--------------IPKQINLLRYSA-------------------WHADT----- 607

Query: 725  EVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELY 782
            E     PG+ +                + I + +L+ G + K     ++  LVH + E  
Sbjct: 608  ETGFITPGDTQ----------------VRIERGELLAGTLCKKTLGTSNGSLVHVIWEEV 651

Query: 783  GSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEA 842
            G + A   L     L   +L  +GFT G+ D  I      E+ N    + +   +  +  
Sbjct: 652  GPDAARKFLGHTQWLVNYWLLQNGFTIGIGDT-IADSSTMEKINETISNAKTAVKDLIRQ 710

Query: 843  LELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNK--HTSSSVINELLSEGL 900
             +   G E+DP     E  + MR         F+ ++   LNK    + S   + L+E  
Sbjct: 711  FQ---GKELDP-----EPGRTMRDT-------FENRVDQVLNKARDDAGSSAQKSLAE-- 753

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
                  N +  M T+G+KGS +N  Q+++ +GQQ +EGKR+P    G+TLP F   D+ P
Sbjct: 754  -----TNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGP 808

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
             + GF+ + +L GL PQE++FH M GREGL+DTAVKTS +GY+QR L+K +E + + YD 
Sbjct: 809  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 868

Query: 1021 SVRDADGSIVQFCYGEDGVDV 1041
            +VR++ G ++QF YGEDG+D 
Sbjct: 869  TVRNSLGDVIQFLYGEDGMDA 889



 Score = 86.7 bits (213), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 56/73 (76%), Gaps = 1/73 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F+ SL  PGE +G +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ +A
Sbjct: 1064 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1123

Query: 1191 SKDIKTPVITCPL 1203
             K IKTP ++  L
Sbjct: 1124 -KRIKTPSLSVYL 1135



 Score = 46.6 bits (109), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKA 49
           C+TC      CPGHFG+++L  P+Y+      + ++++ +CF C    A
Sbjct: 66  CETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILA 114


>gi|378756627|gb|EHY66651.1| RNA polymerase 2, partial [Nematocida sp. 1 ERTm2]
          Length = 1035

 Score =  328 bits (840), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 195/454 (42%), Positives = 270/454 (59%), Gaps = 31/454 (6%)

Query: 753  LIYKNDLV-RGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTC 809
             I +N +V  G +DK+Q   A YGL+H V E YG   A +LL+AL RLF   L + G +C
Sbjct: 252  FILRNGIVISGALDKSQIGTASYGLIHAVHERYGGRAANSLLTALGRLFNRALIVRGHSC 311

Query: 810  GVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGD 869
             +DDL++  + E++R+  +      G  V    +    G+ +      + ++   R  G 
Sbjct: 312  TMDDLVVRPEAEKQRRVQIEEGLVAGSTVSCNYM----GSNM------TYLQDTARAAGR 361

Query: 870  AAVAYFDMKMTSQLNKHTS--SSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQI 927
              V+     + +++   TS  +S + E    GL     +N +  M  SGAKGS VN  QI
Sbjct: 362  GEVSAEKKDLDAEMRASTSDCASQVLETAGGGLSVQGLRNNMRAMVISGAKGSLVNLGQI 421

Query: 928  SSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGR 987
             + LGQQELEG RVP M +G+TLP+F P +  PRA GFI  RFLTG+ P+E+YFHCMAGR
Sbjct: 422  VAMLGQQELEGLRVPLMPTGRTLPTFCPLEPTPRAHGFISQRFLTGVHPEEFYFHCMAGR 481

Query: 988  EGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFI 1047
            EGL+DTAVKTSRSGYLQRCLIK+LE L++  D SVRDA GS++Q  YGEDGV   + +++
Sbjct: 482  EGLIDTAVKTSRSGYLQRCLIKHLEGLRVEVDGSVRDATGSVIQMVYGEDGVHPEKAAYL 541

Query: 1048 SKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALK 1107
             K +  A     + R      D GS              + +G   A+   + +L +A +
Sbjct: 542  HKHEFFAENPSQK-RQNTGIEDSGS-------------LQSAGNASAAGLTVGDLYNA-R 586

Query: 1108 DNAEKFADKFLSNEMAKQDFLKLVKHK-FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTF 1166
                + ++K+L++  A +   K  + K +  +   PGE VG+LA+QSVGEPSTQMTLNTF
Sbjct: 587  SVPGRVSEKYLASINAAKAVEKGTEWKRYAQASVDPGEAVGILAAQSVGEPSTQMTLNTF 646

Query: 1167 HLAGRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
            HLAG G  NVTLG+PRL+EI+  A+K IKTPVIT
Sbjct: 647  HLAGVGGKNVTLGMPRLKEIVMHATKKIKTPVIT 680



 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 140/264 (53%), Gaps = 34/264 (12%)

Query: 436 NGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSD---------- 485
            GAE    AT  +  +S   + P K  R  I R+L T+         D+D          
Sbjct: 14  QGAEFVEDATGKM--ISLEHITPEK--REHIARQLLTAASFNAHASTDADVHVQTPLQPL 69

Query: 486 NEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
           +    + V+RH++ GD VLVNRQP+LH+ S+M H VR+L  E+T+R+HY NC++YNADFD
Sbjct: 70  SSLSIRRVWRHMRTGDYVLVNRQPSLHRVSMMGHRVRILPRERTIRLHYVNCNSYNADFD 129

Query: 546 GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
           GDEMNVH PQ+ V++ EA  I   +  ++  +NG P+R  +QDH+V   L  ++  FL R
Sbjct: 130 GDEMNVHCPQNIVAQVEAEEICATDKCFISATNGAPVRGHVQDHVVMGTLFLQRCIFLPR 189

Query: 606 DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
           DE+ Q+L ++                   I +  + VL   PAI +P  L+TG Q +T V
Sbjct: 190 DEYAQMLVTALEE----------------IQQHRRWVLE-KPAILRPARLYTGAQCVTGV 232

Query: 666 LNHITRGRPPFVVERGGKLPQDFF 689
           + ++   R    +    KL  DF 
Sbjct: 233 MQNL---RMDISLAARTKLGDDFI 253


>gi|45935333|gb|AAS79688.1| RNA polymerase II large subunit [Ephedra viridis]
          Length = 1013

 Score =  328 bits (840), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 231/715 (32%), Positives = 344/715 (48%), Gaps = 146/715 (20%)

Query: 344  LQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
            LQ  V   FD    G+  A QR       IC  L+ KEG  R  LMGKRV+++ R+VI+P
Sbjct: 228  LQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 287

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DP + ++++G+P   AL LTYPE VTP+N+ +L++ +  G   HP              P
Sbjct: 288  DPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGP--HP--------------P 331

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSI 516
            P K     I R  D  R  +    + SD+  E G  V RHL DGD VL NRQP+LHK SI
Sbjct: 332  PGKTGAKYIIRD-DGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSI 390

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            M H ++++    T R++ +  S YNADFDGDEMN+H PQ   +RAE   ++      V P
Sbjct: 391  MGHRIKIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEILELMMVPKCIVSP 449

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
             +  P+  ++QD ++    +TK+DTF+ +D F  +L            F GK        
Sbjct: 450  QSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM-------WWEDFDGK-------- 494

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
                  +P  PAI KP P+WTGKQV   +                  +P+     R++A 
Sbjct: 495  ------VP-APAILKPRPIWTGKQVFNLI------------------IPKQINLVRYSA- 528

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
                  ++D+G L+                                    L +  + I K
Sbjct: 529  ---WHNESDRGHLT------------------------------------LGDTVVRIEK 549

Query: 757  NDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             +++ G + K     +   L+H + E  G + A   L     L   +L   GF+ G+ D 
Sbjct: 550  GEVITGTLCKKTLGASSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSMGIGD- 608

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALE--LEDGAEIDPIKLKSEIEKAM-----RGG 867
                               I     ++ +   ++D      IK++  IEK M     +  
Sbjct: 609  ------------------TIADATTMDTINETIQDAK----IKVQELIEKYMAHKLEQEP 646

Query: 868  GDAAVAYFDMKMTSQLNK--HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQ 925
            G   +  F+ ++   LNK    + +     LSE        N +  M T+G+KGS +N  
Sbjct: 647  GRTLLESFENQVNQVLNKARDDAGNSAQRSLSES-------NNLKAMVTAGSKGSFINIS 699

Query: 926  QISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMA 985
            Q+++ +GQQ +EGKR+P    G+TLP F   D  P + GF+ + +L GL PQE++FH M 
Sbjct: 700  QMTACVGQQNVEGKRIPYGFQGRTLPHFVKDDKGPESRGFVENSYLRGLTPQEFFFHAMG 759

Query: 986  GREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            GREGL+DTAVKTS +GY+QR L+K +E + + YD +VR++ G ++QF YGEDG+D
Sbjct: 760  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDATVRNSLGDVIQFLYGEDGMD 814


>gi|391332786|ref|XP_003740810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Metaseiulus occidentalis]
          Length = 1851

 Score =  328 bits (840), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 249/802 (31%), Positives = 383/802 (47%), Gaps = 140/802 (17%)

Query: 256  ENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVMEHPQT 310
            E  +E+   IS+ +    G   + A  S   L V+ VPP+  R P+    G +  +   T
Sbjct: 213  ERVYEIFKHISEEECFCLGMDERYAKPSWMVLTVLAVPPLCVR-PAVVMFGSARNQDDLT 271

Query: 311  VLLSKVLQANIYLANAYVNQPDNAKVIVARWMN-LQQSVNVLFDGKNAAGQRDMASG--- 366
              LS +++AN  L      Q   A  I+A  +  LQ  V  L+D +     R M      
Sbjct: 272  HKLSDIVKANNELIRN--EQSGAAPHILAENVKMLQFHVATLYDNELPGLPRAMQKSGRP 329

Query: 367  ---ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVT 423
               I Q L+ KEG  R  LMGKRV+++ R+VI+PDP L +NE+G+P   A  LT+PE VT
Sbjct: 330  LKSIKQRLKAKEGRIRGNLMGKRVDFSARTVITPDPNLKINEVGVPRSIAQNLTFPEIVT 389

Query: 424  PWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKD 483
            P+N+ ++++ +  G   +PGA + + +                G ++D        P K 
Sbjct: 390  PFNIERMQELVSRGNNQYPGAKYIVRE---------------NGERIDLR----FHP-KA 429

Query: 484  SDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNA 542
            SD   + G  V RH+Q+GD+++ NRQPTLHK S+M H +RVL    T RM+ +  + YNA
Sbjct: 430  SDLHLQCGYRVERHVQNGDIIVFNRQPTLHKMSMMGHKIRVLPW-STFRMNLSVTTPYNA 488

Query: 543  DFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTF 602
            DFDGDEMN+H PQ   +RAE   +     Q + P    P+  ++QD + +   +TK+D +
Sbjct: 489  DFDGDEMNMHVPQSLETRAEIEQLAMVPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVY 548

Query: 603  LNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI 662
            L +D+   LL         L  + GK              +P +PAI KP+PLWT KQ+ 
Sbjct: 549  LEKDQMMNLLMF-------LPIWNGK--------------VP-IPAILKPKPLWTAKQLF 586

Query: 663  TAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGK 722
            + +                  +P +                     L +T+  H D    
Sbjct: 587  SLI------------------IPGNV-------------------NLIRTHSTHPD---- 605

Query: 723  KKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF-ADYG-LVHTVQE 780
                         E +    K     + K++I    L+ G++ K    A  G L+H +  
Sbjct: 606  -------------EEDDGPYKWISPGDTKVIIEHGQLLSGIVCKKTVGASAGSLMHVLFV 652

Query: 781  LYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHL 840
              G   AG   S L  +   +L   G + G+ D +  +    + +N +  +    K+  +
Sbjct: 653  EMGHEVAGAFYSHLQTVVNAWLLYEGHSIGIGDTIADQQTYMDIQNTIKKA----KQDVI 708

Query: 841  EALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN--KHTSSSVINELLSE 898
            E +E     E++P              G+     F+ ++   LN  +  +     + LSE
Sbjct: 709  EVIEKAHNDELEPTP------------GNTLRQTFENQVNRILNDARDKTGGSAQKSLSE 756

Query: 899  GLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDW 958
                    N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P     +TLP F   D+
Sbjct: 757  F-------NNFKSMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDF 809

Query: 959  APRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISY 1018
             P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY+QR LIK +E + I Y
Sbjct: 810  GPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMICY 869

Query: 1019 DYSVRDADGSIVQFCYGEDGVD 1040
            D +VR+++G ++QF YGEDG+D
Sbjct: 870  DGTVRNSNGQVIQFRYGEDGLD 891



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/77 (58%), Positives = 55/77 (71%), Gaps = 1/77 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
             L  ++ +F  S  QPGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI
Sbjct: 1062 LLGEIEARFHQSQGQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEI 1121

Query: 1187 LTIASKDIKTPVITCPL 1203
            + I SK  KTP +T  L
Sbjct: 1122 INI-SKQPKTPSLTVFL 1137



 Score = 47.4 bits (111), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
           C TC      CPGHFGH++L  PV++         +L+ +C++C     S
Sbjct: 69  CLTCSGNMTECPGHFGHLELAKPVFHVGFLTKTLKVLRCVCYYCSRLLVS 118


>gi|212533501|ref|XP_002146907.1| DNA-dependent RNA polymerase II largest subunit, putative
            [Talaromyces marneffei ATCC 18224]
 gi|210072271|gb|EEA26360.1| DNA-dependent RNA polymerase II largest subunit, putative
            [Talaromyces marneffei ATCC 18224]
          Length = 1744

 Score =  328 bits (840), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 224/679 (32%), Positives = 328/679 (48%), Gaps = 138/679 (20%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  RQ LMGKRV+++ R+VI  DP L++ E+G P   A+ LTYPE VTP+N+  L
Sbjct: 346  LKGKEGRLRQNLMGKRVDFSARTVICGDPNLSLEEVGTPRSTAMILTYPEVVTPYNIEFL 405

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
            +  + NG  I+PGA + +           +++ + + RK +              N   G
Sbjct: 406  QKLVNNGPTIYPGARYIVRD-------NGERIDLRMARKTNA-------------NLLYG 445

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RHL DGDV+L NRQP+LHK S+M H VRV+    T R++ +  + YNADFDGDEMN
Sbjct: 446  WKVERHLLDGDVILFNRQPSLHKESMMGHRVRVMP-YSTFRLNLSVTTPYNADFDGDEMN 504

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E +RAE   +    N  V P    PL  ++QD +     + ++D FL +D+   
Sbjct: 505  MHVPQSEEARAELLQLALVPNNIVSPQRNGPLMGIVQDSLCGIYKICRRDVFLTKDQVMN 564

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            L+                     L       V+P  PAI KP P WTGKQ+I+ V     
Sbjct: 565  LM---------------------LWVPDWDGVIPQ-PAIIKPRPRWTGKQIISMV----- 597

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                         LP      R +          DK  LS+                   
Sbjct: 598  -------------LPSGLNLLRVD---------KDKAPLSE------------------- 616

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAG 788
                        K   L++  +L++   L+ G+  K      G  +VHT+   YG   A 
Sbjct: 617  ------------KFSPLTDGGILVHGGQLMYGMFSKKTVGASGGGVVHTIFNEYGPEAAV 664

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLI-------LKDKERERKNHLHGSEEIGKRVHLE 841
            +  +   R+   +L  +GF+ G+ D +        ++D  R  K  +   EEI +     
Sbjct: 665  SFFNGAQRVVNYWLLHNGFSIGIGDTIPDKKTIERIEDAVRAGKAEV---EEIVQSATEN 721

Query: 842  ALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLL 901
             LE   G  I     +S++ +A+    +AA +  + K    LN                 
Sbjct: 722  TLEALPGMNIRET-FESKVSRALNNAREAAGSETE-KSLKDLN----------------- 762

Query: 902  KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 961
                 N I  M  SG+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D++P 
Sbjct: 763  -----NAIQ-MARSGSKGSAINISQMTAIVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPE 816

Query: 962  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1021
            + GF+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE L + YD +
Sbjct: 817  SRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEELMVKYDGT 876

Query: 1022 VRDADGSIVQFCYGEDGVD 1040
            VR++ G I+QF YGEDG+D
Sbjct: 877  VRNSLGDIIQFLYGEDGLD 895



 Score = 93.2 bits (230), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 66/91 (72%), Gaps = 1/91 (1%)

Query: 1111 EKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
            ++   ++  N++A +  L  ++ +F  + A PGE VG+LA+QS+GEP+TQMTLNTFH AG
Sbjct: 1050 KRLVTQYSMNKLAFKHVLGAIEMRFAQAQANPGEMVGVLAAQSIGEPATQMTLNTFHFAG 1109

Query: 1171 RGEMNVTLGIPRLQEILTIASKDIKTPVITC 1201
                NVTLG+PRL+E+L +A+ +IKTP +T 
Sbjct: 1110 VSSKNVTLGVPRLKELLNVAT-NIKTPSMTV 1139



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 2/99 (2%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKA--SRREVEKCV 58
           C+TC + Q  CPGH+GHI+L  PVY+         LL+ +C  C   KA  S  + +  +
Sbjct: 69  CETCEEGQKECPGHYGHIELATPVYHIGFLTKTKKLLETVCHNCGKIKADMSDPKFQDAL 128

Query: 59  RKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSC 97
           R  +   + DII   S D+++      PED D  +K + 
Sbjct: 129 RIRDPKRRFDIIWRLSKDVNICEADPIPEDEDPFSKEAS 167


>gi|120561170|gb|ABM26980.1| RNA polymerase II largest subunit [Nosema granulosis]
          Length = 917

 Score =  327 bits (839), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 240/778 (30%), Positives = 377/778 (48%), Gaps = 148/778 (19%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
              L V+LVPP   R PS   + ++  E   T  L+ +++AN YL   Y  +     +I  
Sbjct: 87   LILTVLLVPPPAVR-PSIEMEGMLRAEDDLTHKLADIIKANTYLKK-YELEGAPGHIIRD 144

Query: 340  RWMNLQQSVNVLFDGKNAAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYAC 391
                LQ  +  L D  + +GQ        R + S I   L+ KEG  R  LMGKRV+++ 
Sbjct: 145  YEQLLQFHIATLIDN-DISGQPQALQKSGRPLKS-ISARLKGKEGRVRGNLMGKRVDFSA 202

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            RSVI+ D  +++  +G+P   A   T+PE++TP N+ +L   + NG   +PGA + +   
Sbjct: 203  RSVITADANISLEXVGVPYEVAKIHTFPEKITPXNIERLEKLVANGPNEYPGANYVIR-- 260

Query: 452  STMRLPPNKKMRISIGRKLDT--SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQP 509
                         + G+++D   +RG I           EG +V RH+QDGDVVL NRQP
Sbjct: 261  -------------TXGQRIDLKFNRGDIKLE--------EGYVVERHMQDGDVVLFNRQP 299

Query: 510  TLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNA 569
            +LHK S+M H V+V+ G KT R++ +  S YNADFDGDEMN+H PQ   + +E   I   
Sbjct: 300  SLHKMSMMGHRVKVMXG-KTSRLNLSVTSPYNADFDGDEMNLHMPQSYNTISELEEICMV 358

Query: 570  NNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKP 629
            + Q + P +  P+  ++QD +      T +D F ++ E  Q+LYS               
Sbjct: 359  SKQVLGPQSNKPVMGIVQDTLTGLRFFTIRDAFFDKREMMQVLYS----------IEQNI 408

Query: 630  GQRVLISRSEQEVLPLL--PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQD 687
             +R     S   +L LL  PAI KP+ LWTGKQ+++ +                   P  
Sbjct: 409  NRRQ--DSSNYGILDLLNRPAIQKPKELWTGKQILSFI------------------FPSV 448

Query: 688  FFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKEL 747
            F++T      QS+  +N                                          L
Sbjct: 449  FYQT------QSEDPEN------------------------------------------L 460

Query: 748  SEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFL-QM 804
            S+  ++I   +++ G+IDK     +  GL+H +   YGS       + + ++ T FL  +
Sbjct: 461  SDSAVVIIGGEIMSGIIDKKSVGASQGGLIHIITNDYGSKRITQFFNDIQKIITKFLMNI 520

Query: 805  HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAM 864
            H F+ G+ D +   D  R  +  +  ++                  +D I LK++  +  
Sbjct: 521  HVFSMGIGDTVADADTLRVVRKAIDNAKN----------------SVDEIILKAQNNRLD 564

Query: 865  RGGGDAAVAYFDMKMTSQLNK--HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV 922
            R  G      F+ ++   LNK    S +   + L++        N +  M  SG+KGS +
Sbjct: 565  RLPGMTMKESFESQVNFVLNKARDVSGTSTQKSLNQC-------NNMKAMVLSGSKGSFI 617

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  Q+++ +GQQ +EGKR+P   + +TLP F   D++ ++ GF+ + +L+GL P+E++FH
Sbjct: 618  NISQVTACVGQQNVEGKRIPFGFAYRTLPHFSKEDYSGKSRGFVENSYLSGLSPEEFFFH 677

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             M GREGL+DTA+KT+ +GY+QR L+K +E   +  D SVR A G+I Q+ YGEDG D
Sbjct: 678  AMGGREGLIDTAIKTAETGYIQRRLVKAMEDATVKLDQSVRGASGNIYQYKYGEDGFD 735


>gi|261332267|emb|CBH15261.1| DNA-directed RNA polymerase iii largest subunit [Trypanosoma brucei
            gambiense DAL972]
          Length = 1530

 Score =  327 bits (838), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 241/779 (30%), Positives = 367/779 (47%), Gaps = 146/779 (18%)

Query: 282  FFLGVVLVPPIKFR-LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
              +  +LVPP+  R     G  +V +   T   + +L +   + +  ++    A      
Sbjct: 258  LLMTTLLVPPVPVRPRGCAGTTTVRDDDLTAQYNDILVSTDTMQDGSLD----ATRYTET 313

Query: 341  WMNLQQSVNVLFDGKNAAGQRDMASG----ICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            W  LQ     L D        ++ +       Q L+ K G FR  L GKRV+Y+ RSVIS
Sbjct: 314  WEMLQMRAARLLDSSLPGFPPNVRTSDLKSYAQRLKSKHGRFRCNLSGKRVDYSGRSVIS 373

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATH-YLDKLSTMR 455
            PDP L V+E+ +P + A  LTYP+RV   N   +R  + NG  +HPGAT  YL +  + +
Sbjct: 374  PDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRLVRNGPHVHPGATTVYLAQEGSKK 433

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
               N++ R  +  +L                   G +V RH+ +GD+VL NRQP+LH+ S
Sbjct: 434  SLKNERDRHRLAARLAV-----------------GDIVERHVMNGDLVLFNRQPSLHRVS 476

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            +MAH  RVL   +T R +   C+ YNADFDGDEMNVHF Q E +RAEA  +++     + 
Sbjct: 477  MMAHRARVLPF-RTFRFNECCCAPYNADFDGDEMNVHFVQTEKARAEALQLMSTARNIIS 535

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 635
              NG+P+ +  QD + +A L+T +D F +R EF Q++      S  LG  T         
Sbjct: 536  AKNGEPIIACTQDFLAAAYLVTSRDVFFDRGEFSQMV------SHWLGPVT--------- 580

Query: 636  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
                Q  LP +PAI KP  LWTGKQ    +   I R  P   V    + P  F+ TR   
Sbjct: 581  ----QFRLP-IPAILKPVELWTGKQ----LFELIVRPSPEVDVLLSFEAPTKFY-TR--- 627

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
                      KGK                                     + +EE  + +
Sbjct: 628  ----------KGK------------------------------------HDCAEEGYVAF 641

Query: 756  KND-LVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
             +   + G +DK      A  GL   +  + G      ++S +++  + +L  +GF+ G+
Sbjct: 642  LDSCFISGRLDKKLLGGGAKDGLFARLHTIAGGGYTARVMSRIAQFTSRYLTNYGFSLGL 701

Query: 812  DDLLILKDKERERKNHLHGSEEI----------GKRVHLEALELEDGAEIDPIKLKSEIE 861
             D+    +  +++   L  S E+          G+ + L  L ++   E    +L +E+ 
Sbjct: 702  GDVAPTPELNKQKAAVLARSVEVCDGLIKSAKTGRMIPLPGLTVKQSLE---ARLNTELS 758

Query: 862  KAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSK 921
            K     G AAV          L+ H ++ +I                   M  SG+KGS 
Sbjct: 759  KVRDECGTAAV--------QTLSIHNNTPLI-------------------MVQSGSKGSA 791

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            +N  Q+ + +GQQ + GKR+      ++LP FH ++ AP A GF+ + F +GL P E++F
Sbjct: 792  LNIAQMMACVGQQTVSGKRILDAFQDRSLPHFHRFEEAPAARGFVANSFYSGLSPTEFFF 851

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            H MAGREGLVDTAVKT+ +GY+ R L+K +E L + YD +VR+  G ++Q  +GEDG+D
Sbjct: 852  HTMAGREGLVDTAVKTAETGYIYRRLMKAMENLSVRYDGTVRNTKGDVIQLRFGEDGLD 910



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 56/79 (70%), Gaps = 1/79 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            F+     K++    +PG P G +A+QSVGEPSTQMTL TFH AG   M++T G+PRL E+
Sbjct: 1126 FIAQCASKYLRKACEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQGVPRLVEV 1185

Query: 1187 LTIASKDIKTPVITCPLLV 1205
            +  A+++I TPV+T P+L+
Sbjct: 1186 IN-ANRNIATPVVTAPVLL 1203



 Score = 48.5 bits (114), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG     C GH GHIDL  PV++   F  +  + + IC  C H      E++   R+
Sbjct: 74  CETCGLNSIECVGHPGHIDLEAPVFHLGFFTTVLRICRTICKRCSHVLLDDTEIDYYKRR 133

Query: 61  L 61
           L
Sbjct: 134 L 134


>gi|242778248|ref|XP_002479200.1| DNA-dependent RNA polymerase II largest subunit, putative
            [Talaromyces stipitatus ATCC 10500]
 gi|218722819|gb|EED22237.1| DNA-dependent RNA polymerase II largest subunit, putative
            [Talaromyces stipitatus ATCC 10500]
          Length = 1755

 Score =  327 bits (838), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 229/673 (34%), Positives = 324/673 (48%), Gaps = 126/673 (18%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  RQ LMGKRV+++ R+VI  DP L++ E+G P   A+ LTYPE VTP+N+  L
Sbjct: 346  LKGKEGRLRQNLMGKRVDFSARTVICGDPNLSLFEVGTPRSSAMILTYPEVVTPYNIEFL 405

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
            +  + NG  I+PGA + +                  G ++D          K S N   G
Sbjct: 406  QKLVNNGPTIYPGARYIVR---------------DNGERIDLRMAR-----KTSSNLLYG 445

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RHL DGDV+L NRQP+LHK S+MAH VRV+    T R++ +  + YNADFDGDEMN
Sbjct: 446  WKVERHLLDGDVILFNRQPSLHKESMMAHRVRVMP-YSTFRLNLSVTTPYNADFDGDEMN 504

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E +RAE   +       V P    PL  ++QD +     + ++D FL +D+   
Sbjct: 505  MHVPQSEEARAELQELALVPLNIVSPQRNGPLMGIVQDSLCGIYKICRRDVFLTKDQVMN 564

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            L+                     L       V+P  PAI KP P WTGKQ+I+ V     
Sbjct: 565  LM---------------------LWVPDWDGVIPQ-PAILKPRPRWTGKQIISMV----- 597

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                         LP      R +          DK  LS+                   
Sbjct: 598  -------------LPSGLNLLRID---------KDKAPLSE------------------- 616

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAG 788
                        K   L++  LL++   L+ G+  K      G  +VHT+   YG + A 
Sbjct: 617  ------------KFSPLADGGLLVHGGQLMYGMFSKKTVGASGGGIVHTIFNEYGPDAAV 664

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
            T      R+   +L  +GF+ G+ D +  K K  ER               +EA      
Sbjct: 665  TFFDGAQRVVNYWLLHNGFSIGIGDTIPDK-KTIER---------------IEAAVRAGK 708

Query: 849  AEIDPIKLKSEIEKAMRG-GGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKN 907
            AE++ I ++S  E  +    G      F+ K++  LN     +   E  SE        N
Sbjct: 709  AEVEQI-VQSATENTLEPLPGMNIRETFESKVSRALN-----NAREEAGSETEKSLKDLN 762

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
                M  SG+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D++P + GF+ 
Sbjct: 763  NAVQMARSGSKGSTINISQMTAIVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVE 822

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
            + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR L+K LE L + YD +VR++ G
Sbjct: 823  NSYLRGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRKLVKALEELMVKYDGTVRNSLG 882

Query: 1028 SIVQFCYGEDGVD 1040
             I+QF YGEDG+D
Sbjct: 883  DIIQFLYGEDGLD 895



 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 65/91 (71%), Gaps = 1/91 (1%)

Query: 1111 EKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
            ++   ++  N++A    L  ++ +F  + A PGE VG+LA+QS+GEP+TQMTLNTFH AG
Sbjct: 1050 KRLVTQYSMNKLAFNHVLGAIEMRFARAQANPGEMVGVLAAQSIGEPATQMTLNTFHFAG 1109

Query: 1171 RGEMNVTLGIPRLQEILTIASKDIKTPVITC 1201
                NVTLG+PRL+EIL +A+ +IKTP +T 
Sbjct: 1110 VSSKNVTLGVPRLKEILNVAT-NIKTPSMTV 1139



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKA--SRREVEKCV 58
           C+TC + Q  CPGHFGHI+L  PV++         LL+ +C  C   KA  S  + +  +
Sbjct: 69  CETCEEGQKECPGHFGHIELATPVFHIGFLTKTKKLLETVCHNCGKIKADMSDPKFQDAL 128

Query: 59  RKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNK 94
           R  +   + DII   S D+ +      PED D  +K
Sbjct: 129 RIRDPKRRFDIIWRLSKDVAICEADPLPEDEDPFSK 164


>gi|255941856|ref|XP_002561697.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586320|emb|CAP94069.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1733

 Score =  327 bits (838), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 223/676 (32%), Positives = 323/676 (47%), Gaps = 131/676 (19%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  RQ LMGKRV+++ R+VI+ DP L ++E+G+P   A  LTYPE VTP+N+ KL
Sbjct: 340  LKGKEGRLRQNLMGKRVDFSARTVITGDPNLRLDEVGVPYSTARILTYPEVVTPYNIEKL 399

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
            +  + NG  +HPGA  Y+ + +  R+      R    + L                   G
Sbjct: 400  QRLVANGPNLHPGA-RYIVRDNGERIDLRHAKRAGAQQLL------------------YG 440

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RHL DGD +L NRQP+LHK S+M H VRV+    T RM+ +  S YNADFDGDEMN
Sbjct: 441  WKVERHLDDGDYILFNRQPSLHKESMMGHRVRVMPF-STFRMNLSVTSPYNADFDGDEMN 499

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E SRAE   +       V P    PL  ++QD +     + ++DTFL +D+   
Sbjct: 500  LHVPQGEESRAELAELTLVPKNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKDQVMN 559

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            L+                    + +   +  + P  PAI KP P WTGKQ+I+       
Sbjct: 560  LM--------------------LWVPDWDGAIPP--PAIIKPRPRWTGKQMISMAFP--- 594

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                                                   S  N +  DK        +G 
Sbjct: 595  ---------------------------------------SGLNLLRVDK--------DGS 607

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAG 788
            P  EK +         L++  LLI+   L+ G++ K        G++HT+   YG +T  
Sbjct: 608  PLSEKFS--------PLNDGGLLIHGGQLMYGMLSKKTVGASGGGVIHTIFNEYGPDTCV 659

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDL----LILKDKERERKNHLHGSEEIGKRVHLEALE 844
               +    +   +L  +GF+ G+ D     L +   E   +N     EEI        LE
Sbjct: 660  KFFTGAQTIVGYWLLHNGFSIGIGDTIPDQLTINKIEEAVRNRKQEVEEITASATENTLE 719

Query: 845  LEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPT 904
               G  +     +S++ +A+    D A    + K    LN                    
Sbjct: 720  ALPGMNVRET-FESKVSRALNNARDEAGDATE-KSLKDLN-------------------- 757

Query: 905  GKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGG 964
              N I  M  SG+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D++P + G
Sbjct: 758  --NAIQ-MARSGSKGSAINISQMTALVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRG 814

Query: 965  FIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD 1024
            F+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD +VR+
Sbjct: 815  FVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRN 874

Query: 1025 ADGSIVQFCYGEDGVD 1040
            + G I+QF YGEDG+D
Sbjct: 875  SLGDIIQFIYGEDGLD 890



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 62/82 (75%), Gaps = 1/82 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            N++A Q  L  ++ +F  + A PGE VG+LA+QS+GEP+TQMTLNTFH AG    NVTLG
Sbjct: 1054 NKLAFQHVLGAIESRFARAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLG 1113

Query: 1180 IPRLQEILTIASKDIKTPVITC 1201
            +PRL+EIL +A+ +IKTP +T 
Sbjct: 1114 VPRLKEILNVAT-NIKTPSMTV 1134



 Score = 49.7 bits (117), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 29/50 (58%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
           C+TC +    CPGHFGHI+L  PV++      +  LL+ +C  C   KA+
Sbjct: 69  CETCEEGPKECPGHFGHIELASPVFHIGFLTKIKKLLETVCHNCGKIKAN 118


>gi|120561215|gb|ABM26993.1| RNA polymerase II largest subunit, partial [Furculomyces boomerangus]
          Length = 1024

 Score =  327 bits (838), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 240/773 (31%), Positives = 373/773 (48%), Gaps = 141/773 (18%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKV-IV 338
              + V+ VPP+  R PS   D+    E   T  L+ +++AN+ + +  V   + A + I+
Sbjct: 173  LIISVMPVPPLAVR-PSIQMDATRQSEDDLTYKLNDIIKANVRVQSCEV---EGAPLHII 228

Query: 339  ARWMNLQQSVNVLFDGKNAAG--QRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYAC 391
              +  L Q     F     +G  Q    SG     I   L+ KEG  R  LMGKRV+++ 
Sbjct: 229  EEFEKLLQFHVATFMNNEISGLPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSA 288

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VI+ DP + ++++G+P   A  +TYPE VTP+N+ KL++ + NG   HPGA  Y+ + 
Sbjct: 289  RTVITGDPNIDIDQVGVPRSIARNMTYPEVVTPYNIEKLQEMVQNGPNEHPGA-KYVIRD 347

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
            S  R+     +R S        RG  + P +       G  V RH+ D DVV+ NRQP+L
Sbjct: 348  SGERI----DLRYS-------KRGGDI-PLRI------GYRVERHMLDDDVVIFNRQPSL 389

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK S+M H V+V+    T R++ +  S YNADFDGDEMN+H PQ E +RAE   I     
Sbjct: 390  HKMSMMGHRVKVMP-YSTFRLNLSVTSPYNADFDGDEMNLHLPQSEETRAEVTEICMVPK 448

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
            Q V P +  P+  ++QD + +  + TK+DT L  D    LL +       +  + G    
Sbjct: 449  QIVSPQSNMPVMGIVQDTLCAINIFTKRDTLLQYDFVMNLLMT-------IPDWDG---- 497

Query: 632  RVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKT 691
                      ++P  P I KP+PLW+GKQ+ + V                  +P+     
Sbjct: 498  ----------IVPT-PCILKPQPLWSGKQIYSMV------------------IPKGVNCH 528

Query: 692  RFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEK 751
            R+N+                    H D      E     PG                + +
Sbjct: 529  RYNS-------------------THPD-----NEYTWCSPG----------------DTR 548

Query: 752  LLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTC 809
            ++I   +L+ G + K      D GL+H ++   G + A        +L   +    GF+ 
Sbjct: 549  IIIENGELLSGALCKRTVGAVDSGLIHVIRNELGPDYAKKFFGGTQKLVNYWFLQTGFSV 608

Query: 810  GVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGD 869
            G+ D +          + +    +I +  ++   EL   A+ D ++         R  G 
Sbjct: 609  GIGDTI-------ADDSTMQTVGDIIRECYMRVDELIRDAQEDRLE---------RLPGM 652

Query: 870  AAVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQI 927
                 F+ K+  +LN  +  +   +   L E        N +  M  SG+KGS +N  Q+
Sbjct: 653  TLKETFESKVNGELNRARDQAGKTVQNRLKEC-------NNVRRMVVSGSKGSYINVSQM 705

Query: 928  SSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGR 987
            ++ +GQQ +EGKR+P     +TLP F   D++P++ GF+ + +L GL PQE+YFH M GR
Sbjct: 706  TASVGQQNVEGKRIPFGFKNRTLPHFSKDDYSPQSRGFVENSYLRGLTPQEFYFHAMGGR 765

Query: 988  EGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            EGL+DTAVKT+ +GY+QR L+K LE + + YD +VR++ GSI+ F YGEDG+D
Sbjct: 766  EGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTVRNSLGSIIDFVYGEDGMD 818


>gi|46136689|ref|XP_390036.1| hypothetical protein FG09860.1 [Gibberella zeae PH-1]
          Length = 2443

 Score =  327 bits (838), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 242/802 (30%), Positives = 380/802 (47%), Gaps = 138/802 (17%)

Query: 257  NEFELCSFISDMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVMEHPQTVLLSK 315
            N F++ S  +D +  G     G    F+   L  PP+  R      ++  E   T  L+ 
Sbjct: 1232 NLFKMIS-PTDCELLGLDPAEGRPEMFIWQFLPAPPVCIRPSVAQDNASNEDDITTKLAD 1290

Query: 316  VLQANIYLANAYVNQPDNAKVIVARWMNLQQS----VNVLFDGKNAAGQRDMASGICQLL 371
            ++  +  + +A + +    + I+ +W  LQ      VN    G    G      G CQ L
Sbjct: 1291 IVWVSGMIRSA-LQKGSPVQTIMEQWEYLQTQIAMYVNSDVPGLQQPGFGKTTRGFCQRL 1349

Query: 372  EKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLR 431
            + K+G FR  L GKRV+++ R+VISPDP L ++++ +P   A  LTYPERV   N+ KLR
Sbjct: 1350 KGKQGRFRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPELVAKNLTYPERVQRHNIEKLR 1409

Query: 432  DSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-- 489
              + NG ++ PGA                       R + +  G  +Q  K  + E+   
Sbjct: 1410 QCVKNGPDVWPGAQ----------------------RVIKSDEGGYLQSLKFGNREYIAR 1447

Query: 490  ----GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
                G +V RHL+D D+VL NRQP+LHK SIM+H+ +V +  +T R++   C  YNADFD
Sbjct: 1448 DLKFGDIVERHLEDNDIVLFNRQPSLHKLSIMSHLAKV-RPWRTFRLNECVCGPYNADFD 1506

Query: 546  GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
            GDEMN+H PQ E +RAEA N++   +    P NG+P+ +  QD I +A LL+ KD F +R
Sbjct: 1507 GDEMNLHVPQTEEARAEAINLMGIKHNLATPKNGEPVIAATQDFITAAYLLSGKDRFFDR 1566

Query: 606  DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
              F  L                     ++  ++  ++ P  PAI  P+ LWTGKQ+   +
Sbjct: 1567 KTFTYLCM------------------HMMDGKTHLDLPP--PAIIAPQSLWTGKQLFGML 1606

Query: 666  LNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKE 725
            +      RP                     +K S  K N   K  KT K           
Sbjct: 1607 M------RP---------------------NKDSPVKVNLDAKC-KTYK----------- 1627

Query: 726  VVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELY 782
                +PG+  + + N        +  L++  ++++ G +DK+   D     + + +   +
Sbjct: 1628 ---ARPGQCPDMDPN--------DGWLVVRNSEVMCGRMDKSTVGDGKKDSIFYVILRDF 1676

Query: 783  GSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGKRV 838
            G + A T ++ L++L    L  HGF+ G+ D+     ++++KER                
Sbjct: 1677 GPDEAVTAMNRLAKLCARQLTNHGFSIGIGDVFPPESLIQEKER---------------- 1720

Query: 839  HLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSE 898
             L A   +   ++       ++EKA     + ++  F   + S++ +   S  +  L   
Sbjct: 1721 -LAAAAYKQCDDLIETFKAGKLEKAAGCNQEQSLENFMSGILSKVRQQAGSYCVETL--- 1776

Query: 899  GLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDW 958
                 +  N   +M  SG+KGS +N  Q+ + +GQQ + G RV      +TLP FH    
Sbjct: 1777 -----SRNNAPLVMAKSGSKGSDLNVAQMVALVGQQIIGGARVADGFQDRTLPHFHKNAR 1831

Query: 959  APRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISY 1018
             P + GF+ + F +GL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   Y
Sbjct: 1832 QPPSKGFVKNSFYSGLSPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQY 1891

Query: 1019 DYSVRDADGSIVQFCYGEDGVD 1040
            D +VR + G IVQF +G D +D
Sbjct: 1892 DDTVRTSGGGIVQFQFGADKLD 1913



 Score = 89.7 bits (221), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 64/97 (65%), Gaps = 4/97 (4%)

Query: 1107 KDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTF 1166
            +D+A++ A   LS     Q F+KL   K+  +  +PG  VG + + S+GEP TQMTL TF
Sbjct: 2030 QDHADRTAKVTLST---LQLFIKLCLEKYKKAHVEPGHAVGAVGAHSIGEPGTQMTLKTF 2086

Query: 1167 HLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            H AG   M++T G+PR++EI+  ASK I TPVITCPL
Sbjct: 2087 HFAGVAGMSITQGVPRIKEIIN-ASKAISTPVITCPL 2122


>gi|162223|gb|AAA30233.1| RNA polymerase III [Trypanosoma brucei]
          Length = 1530

 Score =  327 bits (838), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 241/779 (30%), Positives = 367/779 (47%), Gaps = 146/779 (18%)

Query: 282  FFLGVVLVPPIKFR-LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
              +  +LVPP+  R     G  +V +   T   + +L +   + +  ++    A      
Sbjct: 258  LLMTTLLVPPVPVRPRGCAGTTTVRDDDLTAQYNDILVSTDTMQDGSLD----ATRYTET 313

Query: 341  WMNLQQSVNVLFDGKNAAGQRDMASG----ICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            W  LQ     L D        ++ +       Q L+ K G FR  L GKRV+Y+ RSVIS
Sbjct: 314  WEMLQMRAARLLDSSLPGFPPNVRTSDLKSYAQRLKSKHGRFRCNLSGKRVDYSGRSVIS 373

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATH-YLDKLSTMR 455
            PDP L V+E+ +P + A  LTYP+RV   N   +R  + NG  +HPGAT  YL +  + +
Sbjct: 374  PDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRLVRNGPHVHPGATTVYLAQEGSKK 433

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
               N++ R  +  +L                   G +V RH+ +GD+VL NRQP+LH+ S
Sbjct: 434  SLKNERDRHRLAARLAV-----------------GDIVERHVMNGDLVLFNRQPSLHRVS 476

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            +MAH  RVL   +T R +   C+ YNADFDGDEMNVHF Q E +RAEA  +++     + 
Sbjct: 477  MMAHRARVLPF-RTFRFNECCCAPYNADFDGDEMNVHFVQTEKARAEALQLMSTARNIIS 535

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 635
              NG+P+ +  QD + +A L+T +D F +R EF Q++      S  LG  T         
Sbjct: 536  AKNGEPIIACTQDFLAAAYLVTSRDVFFDRGEFSQMV------SHWLGPVT--------- 580

Query: 636  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
                Q  LP +PAI KP  LWTGKQ    +   I R  P   V    + P  F+ TR   
Sbjct: 581  ----QFRLP-IPAILKPVELWTGKQ----LFELIVRPSPEVDVLLSFEAPTKFY-TR--- 627

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
                      KGK                                     + +EE  + +
Sbjct: 628  ----------KGK------------------------------------HDCAEEGYVAF 641

Query: 756  KND-LVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
             +   + G +DK      A  GL   +  + G      ++S +++  + +L  +GF+ G+
Sbjct: 642  LDSCFISGRLDKKLLGGGAKDGLFARLHTIAGGGYTARVMSRIAQFTSRYLTNYGFSLGL 701

Query: 812  DDLLILKDKERERKNHLHGSEEI----------GKRVHLEALELEDGAEIDPIKLKSEIE 861
             D+    +  +++   L  S E+          G+ + L  L ++   E    +L +E+ 
Sbjct: 702  GDVAPTPELNKQKAAVLARSVEVCDGLIKSAKTGRMIPLPGLTVKQSLE---ARLNTELS 758

Query: 862  KAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSK 921
            K     G AAV          L+ H ++ +I                   M  SG+KGS 
Sbjct: 759  KVRDECGTAAV--------QTLSIHNNTPLI-------------------MVQSGSKGSA 791

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            +N  Q+ + +GQQ + GKR+      ++LP FH ++ AP A GF+ + F +GL P E++F
Sbjct: 792  LNIAQMMACVGQQTVSGKRILDAFQDRSLPHFHRFEEAPAARGFVANSFYSGLSPTEFFF 851

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            H MAGREGLVDTAVKT+ +GY+ R L+K +E L + YD +VR+  G ++Q  +GEDG+D
Sbjct: 852  HTMAGREGLVDTAVKTAETGYIYRRLMKAMENLSVRYDGTVRNTKGDVIQLRFGEDGLD 910



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 56/79 (70%), Gaps = 1/79 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            F+     K++    +PG P G +A+QSVGEPSTQMTL TFH AG   M++T G+PRL E+
Sbjct: 1126 FIAQCASKYLRKACEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQGVPRLVEV 1185

Query: 1187 LTIASKDIKTPVITCPLLV 1205
            +  A+++I TPV+T P+L+
Sbjct: 1186 IN-ANRNIATPVVTAPVLL 1203



 Score = 48.5 bits (114), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG     C GH GHIDL  PV++   F  +  + + IC  C H      E++   R+
Sbjct: 74  CETCGLNSIECVGHPGHIDLEAPVFHLGFFTTVLRICRTICKRCSHVLLDDTEIDYYKRR 133

Query: 61  L 61
           L
Sbjct: 134 L 134


>gi|133355|sp|P08968.1|RPC1_TRYBB RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
            polymerase III subunit C1; AltName: Full=DNA-directed RNA
            polymerase III largest subunit; AltName: Full=RNA
            polymerase III subunit C160
 gi|10524|emb|CAA31014.1| unnamed protein product [Trypanosoma brucei]
          Length = 1530

 Score =  327 bits (838), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 241/779 (30%), Positives = 367/779 (47%), Gaps = 146/779 (18%)

Query: 282  FFLGVVLVPPIKFR-LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
              +  +LVPP+  R     G  +V +   T   + +L +   + +  ++    A      
Sbjct: 258  LLMTTLLVPPVPVRPRGCAGTTTVRDDDLTAQYNDILVSTDTMQDGSLD----ATRYTET 313

Query: 341  WMNLQQSVNVLFDGKNAAGQRDMASG----ICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            W  LQ     L D        ++ +       Q L+ K G FR  L GKRV+Y+ RSVIS
Sbjct: 314  WEMLQMRAARLLDSSLPGFPPNVRTSDLKSYAQRLKSKHGRFRCNLSGKRVDYSGRSVIS 373

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATH-YLDKLSTMR 455
            PDP L V+E+ +P + A  LTYP+RV   N   +R  + NG  +HPGAT  YL +  + +
Sbjct: 374  PDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRLVRNGPHVHPGATTVYLAQEGSKK 433

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
               N++ R  +  +L                   G +V RH+ +GD+VL NRQP+LH+ S
Sbjct: 434  SLKNERDRHRLAARLAV-----------------GDIVERHVMNGDLVLFNRQPSLHRVS 476

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            +MAH  RVL   +T R +   C+ YNADFDGDEMNVHF Q E +RAEA  +++     + 
Sbjct: 477  MMAHRARVLPF-RTFRFNECCCAPYNADFDGDEMNVHFVQTEKARAEALQLMSTARNIIS 535

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 635
              NG+P+ +  QD + +A L+T +D F +R EF Q++      S  LG  T         
Sbjct: 536  AKNGEPIIACTQDFLAAAYLVTSRDVFFDRGEFSQMV------SHWLGPVT--------- 580

Query: 636  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
                Q  LP +PAI KP  LWTGKQ    +   I R  P   V    + P  F+ TR   
Sbjct: 581  ----QFRLP-IPAILKPVELWTGKQ----LFELIVRPSPEVDVLLSFEAPTKFY-TR--- 627

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
                      KGK                                     + +EE  + +
Sbjct: 628  ----------KGK------------------------------------HDCAEEGYVAF 641

Query: 756  KND-LVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
             +   + G +DK      A  GL   +  + G      ++S +++  + +L  +GF+ G+
Sbjct: 642  LDSCFISGRLDKKLLGGGAKDGLFARLHTIAGGGYTARVMSRIAQFTSRYLTNYGFSLGL 701

Query: 812  DDLLILKDKERERKNHLHGSEEI----------GKRVHLEALELEDGAEIDPIKLKSEIE 861
             D+    +  +++   L  S E+          G+ + L  L ++   E    +L +E+ 
Sbjct: 702  GDVAPTPELNKQKAAVLARSVEVCDGLIKSAKTGRMIPLPGLTVKQSLE---ARLNTELS 758

Query: 862  KAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSK 921
            K     G AAV          L+ H ++ +I                   M  SG+KGS 
Sbjct: 759  KVRDECGTAAV--------QTLSIHNNTPLI-------------------MVQSGSKGSA 791

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            +N  Q+ + +GQQ + GKR+      ++LP FH ++ AP A GF+ + F +GL P E++F
Sbjct: 792  LNIAQMMACVGQQTVSGKRILDAFQDRSLPHFHRFEEAPAARGFVANSFYSGLSPTEFFF 851

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            H MAGREGLVDTAVKT+ +GY+ R L+K +E L + YD +VR+  G ++Q  +GEDG+D
Sbjct: 852  HTMAGREGLVDTAVKTAETGYIYRRLMKAMENLSVRYDGTVRNTKGDVIQLRFGEDGLD 910



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 56/79 (70%), Gaps = 1/79 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            F+     K++    +PG P G +A+QSVGEPSTQMTL TFH AG   M++T G+PRL E+
Sbjct: 1126 FIAQCASKYLRKACEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQGVPRLVEV 1185

Query: 1187 LTIASKDIKTPVITCPLLV 1205
            +  A+++I TPV+T P+L+
Sbjct: 1186 IN-ANRNIATPVVTAPVLL 1203



 Score = 48.5 bits (114), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG     C GH GHIDL  PV++   F  +  + + IC  C H      E++   R+
Sbjct: 74  CETCGLNSIECVGHPGHIDLEAPVFHLGFFTTVLRICRTICKRCSHVLLDDTEIDYYKRR 133

Query: 61  L 61
           L
Sbjct: 134 L 134


>gi|21280521|gb|AAM45153.1|AF395835_1 RNA polymerase II largest subunit [Cercomonas ATCC50319]
          Length = 1014

 Score =  327 bits (837), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 222/714 (31%), Positives = 340/714 (47%), Gaps = 148/714 (20%)

Query: 344  LQQSVNVLFDGKNAAGQRD------MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
            LQ SV  LFD + +   R       +++   + L  K G  R  LMGKRV+++ R+VI+ 
Sbjct: 226  LQFSVATLFDXEISGLPRSDNEVVRLSNQFVKRLVGKGGRIRGNLMGKRVDFSARTVITG 285

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DP L+V+++G+P   A+ LT+PE VT +N+ ++R  + NG  +HPGA   +         
Sbjct: 286  DPNLSVDQVGVPRSIAMTLTFPEMVTRFNIAQMRRLVANGPNVHPGARTII--------- 336

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSI 516
                       + D  R  +    K SD   E G  + RH+ DGDV+L NRQP+LHK SI
Sbjct: 337  -----------RDDGKRIDLRFVKKSSDQHLEVGYRIERHIHDGDVILFNRQPSLHKMSI 385

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            MAH +RV+    T R++ +  + YNADFDGDEMN+H PQ  ++RAEA  I+    Q V P
Sbjct: 386  MAHKIRVMPWS-TFRLNLSCTTPYNADFDGDEMNLHVPQSMMTRAEALEIMLCPRQIVSP 444

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
                P+  ++QD ++     T +D FL++     +L         L ++ G         
Sbjct: 445  QANKPVIGIVQDTLLGCMKFTYRDNFLDKAMVFNILMH-------LENWDG--------- 488

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
                  +P +P I KP PLW+GKQ+ + ++                         R N +
Sbjct: 489  -----TVP-IPCILKPVPLWSGKQIFSLII------------------------PRVNME 518

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
            ++++                            G P  E            + + +LL+  
Sbjct: 519  RKAN----------------------------GHPDSEHTVMSVNDTRVRIEQGQLLM-- 548

Query: 757  NDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
                 GV+DK    +    L+H +    G       L+   ++   FL  +GF+ G+ D 
Sbjct: 549  -----GVVDKQTVGNTPGSLIHVIWNECGFEATRQFLAECQKVVNYFLMHYGFSVGIGDT 603

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGG-----GD 869
            +          + L   E   K+   E L L              I+KA  G      G 
Sbjct: 604  I-------APPSTLEKIESTIKQAKKEVLNL--------------IKKAXSGNLDRQPGS 642

Query: 870  AAVAYFDMKMTSQLNKHTSS---SVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQ 926
              +  F+ ++   LNK       SV  +L        T  N I+ M ++G+KG+ +N  Q
Sbjct: 643  TNLESFENQVNGVLNKAADDAGKSVKAQL--------TKMNNINAMVSAGSKGNAINICQ 694

Query: 927  ISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAG 986
            I + +GQQ + GKR+P    G+TLP F+  D +P + GF+ + +L GL PQE++FH M G
Sbjct: 695  IIACVGQQNVSGKRIPFGFHGRTLPHFNKGDLSPESKGFVSNSYLQGLTPQEFFFHAMGG 754

Query: 987  REGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            REGL+DTAVKT+ +GY+QR L+K +E + I YD +VR++ G I+QF YGEDG+D
Sbjct: 755  REGLIDTAVKTAETGYIQRRLVKAMEDVMIKYDATVRNSLGDIIQFAYGEDGMD 808



 Score = 43.5 bits (101), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 11 CPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASR 51
          CPGHFGH++L  PV +      +  LL+ +C+ C     SR
Sbjct: 1  CPGHFGHLELAKPVIHVSFLPTILKLLRCVCYHCSALXVSR 41


>gi|408390218|gb|EKJ69624.1| hypothetical protein FPSE_10220 [Fusarium pseudograminearum CS3096]
          Length = 1450

 Score =  327 bits (837), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 242/802 (30%), Positives = 380/802 (47%), Gaps = 138/802 (17%)

Query: 257  NEFELCSFISDMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVMEHPQTVLLSK 315
            N F++ S  +D +  G     G    F+   L  PP+  R      ++  E   T  L+ 
Sbjct: 239  NLFKMIS-PTDCELLGLDPAEGRPEMFIWQFLPAPPVCIRPSVAQDNASNEDDITTKLAD 297

Query: 316  VLQANIYLANAYVNQPDNAKVIVARWMNLQQS----VNVLFDGKNAAGQRDMASGICQLL 371
            ++  +  + +A + +    + I+ +W  LQ      VN    G    G      G CQ L
Sbjct: 298  IVWVSGMIRSA-LQKGSPVQTIMEQWEYLQTQIAMYVNSDVPGLQQPGFGKTTRGFCQRL 356

Query: 372  EKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLR 431
            + K+G FR  L GKRV+++ R+VISPDP L ++++ +P   A  LTYPERV   N+ KLR
Sbjct: 357  KGKQGRFRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPELVAKNLTYPERVQRHNIEKLR 416

Query: 432  DSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-- 489
              + NG ++ PGA                       R + +  G  +Q  K  + E+   
Sbjct: 417  QCVKNGPDVWPGAQ----------------------RVIKSDEGGYLQSLKFGNKEYIAR 454

Query: 490  ----GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
                G +V RHL+D D+VL NRQP+LHK SIM+H+ +V +  +T R++   C  YNADFD
Sbjct: 455  DLKFGDIVERHLEDNDIVLFNRQPSLHKLSIMSHLAKV-RPWRTFRLNECVCGPYNADFD 513

Query: 546  GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
            GDEMN+H PQ E +RAEA N++   +    P NG+P+ +  QD I +A LL+ KD F +R
Sbjct: 514  GDEMNLHVPQTEEARAEAINLMGIKHNLATPKNGEPVIAATQDFITAAYLLSGKDRFFDR 573

Query: 606  DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
              F  L                     ++  ++  ++ P  PAI  P+ LWTGKQ+   +
Sbjct: 574  KTFTYLCM------------------HMMDGKTHLDLPP--PAIIAPQSLWTGKQLFGML 613

Query: 666  LNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKE 725
            +      RP                     +K S  K N   K  KT K           
Sbjct: 614  M------RP---------------------NKDSPVKVNLDAK-CKTYK----------- 634

Query: 726  VVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELY 782
                +PG+  + + N        +  L++  ++++ G +DK+   D     + + +   +
Sbjct: 635  ---ARPGQCPDMDPN--------DGWLVVRNSEVMCGRMDKSTVGDGKKDSIFYVILRDF 683

Query: 783  GSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGKRV 838
            G + A T ++ L++L    L  HGF+ G+ D+     ++++KER                
Sbjct: 684  GPDEAVTAMNRLAKLCARQLTNHGFSIGIGDVFPPESLIQEKER---------------- 727

Query: 839  HLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSE 898
             L A   +   ++       ++EKA     + ++  F   + S++ +   S  +  L   
Sbjct: 728  -LAAAAYKQCDDLIETFKAGKLEKAAGCNQEQSLENFMSGILSKVRQQAGSYCVETL--- 783

Query: 899  GLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDW 958
                 +  N   +M  SG+KGS +N  Q+ + +GQQ + G RV      +TLP FH    
Sbjct: 784  -----SRNNAPLVMAKSGSKGSDLNVAQMVALVGQQIIGGARVADGFQDRTLPHFHKNAR 838

Query: 959  APRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISY 1018
             P + GF+ + F +GL P E+ FH M+GREGLVDTAVKT+ +GY+ R L+K+LE L   Y
Sbjct: 839  QPPSKGFVKNSFYSGLSPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQY 898

Query: 1019 DYSVRDADGSIVQFCYGEDGVD 1040
            D +VR + G IVQF +G D +D
Sbjct: 899  DDTVRTSGGGIVQFQFGADKLD 920



 Score = 89.7 bits (221), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 64/97 (65%), Gaps = 4/97 (4%)

Query: 1107 KDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTF 1166
            +D+A++ A   LS     Q F+KL   K+  +  +PG  VG + + S+GEP TQMTL TF
Sbjct: 1037 QDHADRTAKVTLST---LQLFIKLCLEKYKKAHVEPGHAVGAVGAHSIGEPGTQMTLKTF 1093

Query: 1167 HLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            H AG   M++T G+PR++EI+  ASK I TPVITCPL
Sbjct: 1094 HFAGVAGMSITQGVPRIKEIIN-ASKAISTPVITCPL 1129


>gi|385303556|gb|EIF47620.1| dna-directed rna polymerase iii largest subunit [Dekkera bruxellensis
            AWRI1499]
          Length = 1472

 Score =  327 bits (837), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 231/750 (30%), Positives = 363/750 (48%), Gaps = 123/750 (16%)

Query: 302  DSVMEHPQTVLLSKVLQANI---YLANAYVNQPDNAKVIVARWMNLQQ-SVNVLFDGKNA 357
            D  ++  + V  S +++A I      N+   Q D  ++ VA ++N    S N++      
Sbjct: 284  DLTVKLTEIVWTSSMIRAGIQKGITLNSLFEQWDYLQLAVAMYINSDSVSPNLMPGSTGG 343

Query: 358  AGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLT 417
            +       G CQ L+ K+G FR  L GKRV+++ R+VISPDP L V+++  P   A  LT
Sbjct: 344  SKSSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSARTVISPDPNLRVDQVCXPELVAKVLT 403

Query: 418  YPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAI 477
            YPERVT +N  KL+  + NG +++PGA + + +   ++    + +R     KL  +    
Sbjct: 404  YPERVTRYNKNKLQTLVRNGPDLYPGANYLIRRNEDVK----RNLRYGDRNKLAKTLSF- 458

Query: 478  VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 537
                        G +V RHL +GD+VL NRQP+LH+ SI+AH V V K  +T R +   C
Sbjct: 459  ------------GDVVERHLVEGDIVLFNRQPSLHRLSILAHYVTV-KKWRTFRFNECVC 505

Query: 538  STYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
            + YNADFDGDEMN+H PQ E +RAEA  ++   +  + P +G+P+ +  QD I  + L+T
Sbjct: 506  APYNADFDGDEMNLHVPQTEEARAEAATLMGVKSNLLTPKSGEPIIAATQDFITGSFLIT 565

Query: 598  KKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWT 657
             KD+F +R  F ++     + S G   F   P                 P I KP  +WT
Sbjct: 566  XKDSFYDRAVFTEMCV---MMSDGATKFDVPP-----------------PTILKPAYMWT 605

Query: 658  GKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHK 717
            GKQ+ + ++                  P    K   N D +S                  
Sbjct: 606  GKQIYSLLIR-----------------PNHESKVLLNFDSKS------------------ 630

Query: 718  DKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFA---DYGL 774
                  K  +  K G   E   N        +  +L+  + L+ GV+DKA         L
Sbjct: 631  ------KTFIPPKDGLPNEMSPN--------DGYVLVRNSQLLSGVMDKALLGGGKKTSL 676

Query: 775  VHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL----ILKDKERERKNHLHG 830
             +T+   YG++ A   ++ +++L   ++   GF+ G++D++    + + K+   +     
Sbjct: 677  FYTILRDYGADEAAKAMNRMAKLAARYMGEKGFSIGINDVIPSEPVKQKKQEMVRIAYKK 736

Query: 831  SEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSS 890
             +++ K      LE + G        + E  +A  GG           + S++ +     
Sbjct: 737  CDDLIKLYKSGKLETQPGCN------EEETLEAKIGG-----------LLSKVREEVGEF 779

Query: 891  VINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTL 950
             INE      L P+  N   +M T G+KGS +N  Q+ + +GQQ + G RVP     +TL
Sbjct: 780  CINE------LDPS--NAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQNRTL 831

Query: 951  PSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1010
            P F      P++ GF+ D F +GL P E++FH ++GREGLVDTAVKT+ +GY  R L+K+
Sbjct: 832  PHFPKNSKTPQSKGFVSDSFYSGLNPPEFFFHAISGREGLVDTAVKTAETGYTSRRLMKS 891

Query: 1011 LECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            +E L   YD +VR++   IVQF YG DG+D
Sbjct: 892  MEDLSTQYDGTVRNSGDGIVQFRYGADGLD 921



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 62/99 (62%), Gaps = 7/99 (7%)

Query: 1112 KFADKFLSNEMAK------QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNT 1165
            K  + +L N++ K      + FL L   K++ +  +PG  VG + + S+GEP TQMTL T
Sbjct: 1042 KAVEXYLINKLQKISVPMIKKFLGLCLTKYIKARVEPGTAVGAVGAHSIGEPGTQMTLKT 1101

Query: 1166 FHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            FH AG   MNVTLG+PR++EI+  ASK I TP+I   L+
Sbjct: 1102 FHFAGVASMNVTLGVPRIKEIIN-ASKLISTPIIKAVLV 1139



 Score = 42.4 bits (98), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 23/44 (52%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC      C GHFGHI L +PV++   F     +L+ IC  C
Sbjct: 67  CATCHGNLATCHGHFGHIKLALPVFHVGYFKATIQVLQTICKNC 110


>gi|397135870|gb|AFO11430.1| RNA polymerase I, partial [Metschnikowia agaves]
          Length = 872

 Score =  327 bits (837), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 236/764 (30%), Positives = 369/764 (48%), Gaps = 154/764 (20%)

Query: 292  IKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVL 351
            I F   ++G D +     T  L+ +L+ANI +    ++   + + +++ +  L Q     
Sbjct: 63   IAFNDTARGEDDL-----TFKLADILKANINVQRLEID--GSPQHVISEFEALLQFHVAT 115

Query: 352  FDGKNAAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
            +   + AGQ        R + S I   L+ KEG  R  LMGKRV+++ R+VIS DP L +
Sbjct: 116  YMDNDIAGQPQALQKTGRPIKS-IRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDL 174

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL-DKLSTMRLPPNKKM 462
            +++G+P   A  LTYPE VTP+N+ +L + + NG   HPGA + + D    + L  NK+ 
Sbjct: 175  DQVGVPISIARTLTYPEVVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKR- 233

Query: 463  RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
                                D   ++ G  V RHL D D VL NRQP+LHK S+MAH V+
Sbjct: 234  ------------------AGDIALQY-GWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVK 274

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            V+    T R++ +  S YNADFDGDEMN+H PQ   +RAE   I     Q V P +  P+
Sbjct: 275  VMP-YSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAEMSQICAVPLQIVSPQSNKPV 333

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
              ++QD +     +T +D F+  ++   +LY        + ++ G              V
Sbjct: 334  MGIVQDTLCGIRKMTLRDIFIEYEQVMNMLY-------WIPNWDG--------------V 372

Query: 643  LPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRK 702
            +P  PA+ KP+PLWTGKQ+++                    +P+     RF+ D +    
Sbjct: 373  IP-PPAVIKPKPLWTGKQLLSMA------------------IPKGIHLQRFD-DGRDMLS 412

Query: 703  KNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRG 762
              DKG L                +V+G                            +++ G
Sbjct: 413  PKDKGIL----------------IVDG----------------------------EIIFG 428

Query: 763  VIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDK 820
            V+DK        GL+HTV    G      L S++ ++   +L  +GF+ G+ D +  KD 
Sbjct: 429  VVDKKTVGATGGGLIHTVMREKGPQICAQLFSSIQKVVNYWLLHNGFSIGIGDTIADKDT 488

Query: 821  ERERKNHLHGSEEIGKRVHLEA----LELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFD 876
             R+    +  +++  + + L+A    LE E G  +     +  + + +    D A    +
Sbjct: 489  MRDVTITIQEAKQKVQEIILDAQQNKLEPEPGMTLRE-SFEHNVSRVLNQARDTAGRSAE 547

Query: 877  MKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
            M +                           N +  M TSG+KGS +N  Q+S+ +GQQ +
Sbjct: 548  MNLKDL------------------------NNVKQMVTSGSKGSFINISQMSACVGQQIV 583

Query: 937  EGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVK 996
            EGKR+P   + +TLP F   D++P + GF+ + +L GL PQE++FH MAGREGL+DTAVK
Sbjct: 584  EGKRIPFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVK 643

Query: 997  TSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            T+ +GY+QR L+K LE + + YD + R++ G I+QF YGEDG+D
Sbjct: 644  TAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGID 687


>gi|241301792|ref|XP_002407502.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
            scapularis]
 gi|215497181|gb|EEC06675.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
            scapularis]
          Length = 1937

 Score =  327 bits (837), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 238/773 (30%), Positives = 369/773 (47%), Gaps = 137/773 (17%)

Query: 282  FFLGVVLVPPIKFRLPS--KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
              + V+ VPP+  R P+    G +  +   T  L+ +++AN  L      Q   A  I+A
Sbjct: 248  MLITVLPVPPLAVR-PAVVMFGSARNQDDLTHKLADIVKANNELIRN--EQSGAAAHIIA 304

Query: 340  RWMN-LQQSVNVLFDGKNAAGQRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACR 392
              +  LQ  V  L D +     R M         I Q L+ KEG  R  LMGKRV+++ R
Sbjct: 305  ETLKMLQFHVATLVDNEMPGLPRAMQKSGRPLKSIKQRLKSKEGRIRGNLMGKRVDFSAR 364

Query: 393  SVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLS 452
            +VI+PDP L ++E+G+P   A  LT+PE VTP+N+ K+ + +  G   +PGA + +    
Sbjct: 365  TVITPDPNLRIDEVGVPRSIAQNLTFPEIVTPFNMDKMHELVRRGNNQYPGAKYIIR--- 421

Query: 453  TMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTL 511
                          G ++D        P K SD   + G  V RH+++GD+++ NRQPTL
Sbjct: 422  ------------DNGERIDLR----FHP-KASDLHLQCGYRVERHVRNGDIIVFNRQPTL 464

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK S+M H ++VL    T RM+ +  + YNADFDGDEMN+H PQ   +RAE   +     
Sbjct: 465  HKMSMMGHRIKVLPW-STFRMNLSVTTPYNADFDGDEMNLHVPQSLETRAEVEQLAMVPR 523

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
            Q + P +  P+  ++QD + +   +TK+D FL +D+   +L         L  + GK   
Sbjct: 524  QIITPQSNKPVMGIVQDTLTAVRKMTKRDIFLEKDQMMTILMF-------LPIWDGK--- 573

Query: 632  RVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKT 691
                       +P +PAI KP+PLWTGKQ+ + +                  +P +    
Sbjct: 574  -----------MP-MPAILKPKPLWTGKQIFSLI------------------IPGNV--- 600

Query: 692  RFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEK 751
                             L +T+  H D                 E +    K     + K
Sbjct: 601  ----------------NLIRTHSTHPD-----------------EEDDGPYKWISPGDTK 627

Query: 752  LLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTC 809
            +LI   +L+ G++ K     +   L+H V    G   AG     +  +   +L + G T 
Sbjct: 628  VLIEHGELISGIVCKKTVGASSGSLMHVVFNELGHQVAGLFYGHIQTVVNAWLLLEGHTI 687

Query: 810  GVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGD 869
            G+ D +  K    + KN +    E  K   ++ +E     E++P              G+
Sbjct: 688  GIGDTIADKQTFIDIKNTI----EKAKHDVIDVIEKAHNDELEP------------SPGN 731

Query: 870  AAVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQI 927
                 F+ ++   LN  +  + +   + LSE        N    M  SGAKGSK+N  Q+
Sbjct: 732  TLRQTFENQVNRILNDARDKTGASAQKSLSEF-------NNFKAMVVSGAKGSKINISQV 784

Query: 928  SSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGR 987
             + +GQQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL P E++FH M GR
Sbjct: 785  IACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 844

Query: 988  EGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            EGL+DTAVKT+ +GY+QR LIK +E + I+YD +VR+++  ++Q  YGEDG+D
Sbjct: 845  EGLIDTAVKTAETGYIQRRLIKAMESVMIAYDGTVRNSNSQVIQLRYGEDGLD 897



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 64/92 (69%), Gaps = 1/92 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            +++ A++F  +  + +  L  ++ +F  S  QPGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SKRVAEEFRLSTESFEWLLGEIETRFHQSQGQPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITC 1201
            G    NVTLG+PRL+EI+ I SK  KTP +T 
Sbjct: 1111 GVSAKNVTLGVPRLKEIINI-SKKPKTPSLTV 1141



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
           C+TC      CPGHFGHI+L  PV++         +L+ +CF+C     S
Sbjct: 72  CQTCAGSMTECPGHFGHIELAKPVFHCGFLTKTIKILRCVCFYCSKLLVS 121


>gi|385805645|ref|YP_005842043.1| DNA-directed RNA polymerase subunit alpha [Fervidicoccus fontis
            Kam940]
 gi|383795508|gb|AFH42591.1| DNA-directed RNA polymerase subunit alpha [Fervidicoccus fontis
            Kam940]
          Length = 882

 Score =  327 bits (837), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 246/778 (31%), Positives = 368/778 (47%), Gaps = 147/778 (18%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
            F L V+ VPP++ R PS   ++ +  E   T  L  +++ N  L  + +       VI  
Sbjct: 209  FILTVLPVPPVQVR-PSIMLETGIRAEDDLTHKLVDIVRTNQRLKES-MEAAAPPIVIDD 266

Query: 340  RWMNLQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRS 393
             W  LQ  V   FD    G   A  R       + Q L+ KEG FR  L GKRV+++ R+
Sbjct: 267  IWELLQYHVTTYFDNEVPGIPPAKHRTGRALKTLAQRLKGKEGRFRGYLSGKRVDFSSRT 326

Query: 394  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLST 453
            VISPDP + +NE+G+P   A  LT P +VT WN+ ++R  ++NG    PGA + +     
Sbjct: 327  VISPDPNIGINEVGVPEDAAKILTVPVKVTQWNLEEMRSYVLNGPYKWPGANYIIR---- 382

Query: 454  MRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHK 513
               P  K++ +   +     R A+      + +   G ++ RHL DGD+VL NRQP+LH+
Sbjct: 383  ---PDGKRVDLRYFK----DRKAL------ASSLTPGYIIERHLIDGDIVLFNRQPSLHR 429

Query: 514  PSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQY 573
             SIMAH V+VL G +T R++   C  YNADFDGDEMN+H PQ E +RAEA  ++      
Sbjct: 430  MSIMAHQVKVLPG-RTFRLNLLVCPPYNADFDGDEMNLHVPQTEEARAEAKELMLVQRHI 488

Query: 574  VRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRV 633
            + P  G P+   +QD+I    LLT K T L +++  ++L  +G                 
Sbjct: 489  LSPRYGGPIIGGLQDYISGGYLLTSKATLLEKEDVIEVLSVTGY---------------- 532

Query: 634  LISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDF-FKTR 692
                  +E LP  PAI+ P+  WTGKQ+++                    LP+DF  KT+
Sbjct: 533  ------KEELP-EPAIYSPKEFWTGKQLVSLF------------------LPKDFTLKTK 567

Query: 693  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL 752
             +          + GKL   +                              E  L++  +
Sbjct: 568  ASI---------NAGKLKCED------------------------------EDCLNDSYI 588

Query: 753  LIYKNDLVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTC 809
            +I K  +  GVIDK            H + + YGS+ A  +   + ++F  +++ HGFT 
Sbjct: 589  VIKKGKMHTGVIDKKSIGAQQPESFYHWITKEYGSDYARYISDVMFKMFIRYIEKHGFTM 648

Query: 810  GVDDLLILKDKERERKNHLHGSEE-------IGKRVHLEALELEDGAEIDPIKLKSEIEK 862
             +DD+ I ++   E +  L  +E+       + +   LE L      E    K+   + K
Sbjct: 649  SLDDVEISEEAREEIRKILKKAEDDVNELIRMMEEGRLEPLPGRTIEETLETKIMERLSK 708

Query: 863  AMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV 922
            A    G+ A    D+                             N   +M  +GA+G+ +
Sbjct: 709  ARDDAGEYAANNLDI----------------------------FNNAFIMARTGARGNIL 740

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  Q+S+ LGQQ + G+R+ R    + LP F   D +P + GF+ + F TGL P E ++H
Sbjct: 741  NLTQMSATLGQQSIRGERINRGYRNRPLPHFKENDKSPASRGFVYNSFRTGLNPVELFYH 800

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
               GREGLVDTAV+TS+SGY+QR LI  L  ++I YD S R  DG++VQF YG D VD
Sbjct: 801  AAGGREGLVDTAVRTSQSGYMQRRLINALLDVRIEYDGSARLPDGTVVQFKYGYDQVD 858



 Score = 47.8 bits (112), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEK---C 57
           C  CG     CPGHFGHI+L  PV +      +Y LL+  C+ C        E+++    
Sbjct: 60  CPVCGNTMQSCPGHFGHIELAKPVIHIGYVKEIYDLLRGTCWKCGRILLPEEEIKQYLDL 119

Query: 58  VRKLE 62
           +R++E
Sbjct: 120 MRRVE 124


>gi|71746952|ref|XP_822531.1| DNA-directed RNA polymerase III largest subunit [Trypanosoma brucei]
 gi|70832199|gb|EAN77703.1| DNA-directed RNA polymerase III largest subunit [Trypanosoma brucei
            brucei strain 927/4 GUTat10.1]
          Length = 1530

 Score =  326 bits (836), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 241/779 (30%), Positives = 367/779 (47%), Gaps = 146/779 (18%)

Query: 282  FFLGVVLVPPIKFR-LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
              +  +LVPP+  R     G  +V +   T   + +L +   + +  ++    A      
Sbjct: 258  LLMTTLLVPPVPVRPRGCAGTTTVRDDDLTAQYNDILVSTDTMQDGSLD----ATRYTET 313

Query: 341  WMNLQQSVNVLFDGKNAAGQRDMASG----ICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            W  LQ     L D        ++ +       Q L+ K G FR  L GKRV+Y+ RSVIS
Sbjct: 314  WEMLQMRAARLLDSSLPGFPPNVRTSDLKSYAQRLKSKHGRFRCNLSGKRVDYSGRSVIS 373

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATH-YLDKLSTMR 455
            PDP L V+E+ +P + A  LTYP+RV   N   +R  + NG  +HPGAT  YL +  + +
Sbjct: 374  PDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRLVRNGPHVHPGATTVYLAQEGSKK 433

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
               N++ R  +  +L                   G +V RH+ +GD+VL NRQP+LH+ S
Sbjct: 434  SLKNERDRHRLAARLAV-----------------GDIVERHVMNGDLVLFNRQPSLHRVS 476

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            +MAH  RVL   +T R +   C+ YNADFDGDEMNVHF Q E +RAEA  +++     + 
Sbjct: 477  MMAHRARVLPF-RTFRFNECCCAPYNADFDGDEMNVHFVQTEKARAEALQLMSTARNIIS 535

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 635
              NG+P+ +  QD + +A L+T +D F +R EF Q++      S  LG  T         
Sbjct: 536  AKNGEPIIACTQDFLAAAYLVTSRDVFFDRGEFSQMV------SHWLGPVT--------- 580

Query: 636  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
                Q  LP +PAI KP  LWTGKQ    +   I R  P   V    + P  F+ TR   
Sbjct: 581  ----QFRLP-IPAILKPVELWTGKQ----LFELIVRPSPEVDVLLSFEAPTKFY-TR--- 627

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
                      KGK                                     + +EE  + +
Sbjct: 628  ----------KGK------------------------------------HDCAEEGYVAF 641

Query: 756  KND-LVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
             +   + G +DK      A  GL   +  + G      ++S +++  + +L  +GF+ G+
Sbjct: 642  LDSCFISGRLDKKLLGGGAKDGLFARLHTIAGGGYTARVMSRIAQFTSRYLTNYGFSLGL 701

Query: 812  DDLLILKDKERERKNHLHGSEEI----------GKRVHLEALELEDGAEIDPIKLKSEIE 861
             D+    +  +++   L  S E+          G+ + L  L ++   E    +L +E+ 
Sbjct: 702  GDVAPTPELNKQKAAVLARSVEVCDGLIKSAKTGRMIPLPGLTVKQSLE---ARLNTELS 758

Query: 862  KAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSK 921
            K     G AAV          L+ H ++ +I                   M  SG+KGS 
Sbjct: 759  KVRDECGTAAV--------QTLSIHNNTPLI-------------------MVQSGSKGSA 791

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            +N  Q+ + +GQQ + GKR+      ++LP FH ++ AP A GF+ + F +GL P E++F
Sbjct: 792  LNIAQMMACVGQQTVSGKRILDAFQDRSLPHFHRFEEAPAARGFVANSFYSGLSPTEFFF 851

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            H MAGREGLVDTAVKT+ +GY+ R L+K +E L + YD +VR+  G ++Q  +GEDG+D
Sbjct: 852  HTMAGREGLVDTAVKTAETGYIYRRLMKAMENLSVRYDGTVRNTKGDVIQLRFGEDGLD 910



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 56/79 (70%), Gaps = 1/79 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            F+     K++    +PG P G +A+QSVGEPSTQMTL TFH AG   M++T G+PRL E+
Sbjct: 1126 FIAQCASKYLRKACEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQGVPRLVEV 1185

Query: 1187 LTIASKDIKTPVITCPLLV 1205
            +  A+++I TPV+T P+L+
Sbjct: 1186 IN-ANRNIATPVVTAPVLL 1203



 Score = 48.5 bits (114), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG     C GH GHIDL  PV++   F  +  + + IC  C H      E++   R+
Sbjct: 74  CETCGLNSIECVGHPGHIDLEAPVFHLGFFTTVLRICRTICKRCSHVLLDDTEIDYYKRR 133

Query: 61  L 61
           L
Sbjct: 134 L 134


>gi|315056155|ref|XP_003177452.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum CBS
            118893]
 gi|311339298|gb|EFQ98500.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum CBS
            118893]
          Length = 1748

 Score =  326 bits (836), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 220/680 (32%), Positives = 331/680 (48%), Gaps = 138/680 (20%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  RQ LMGKRV+++ R+VI+ DP L+++E+G+P   A  LTYPE VTP+N+ +L
Sbjct: 345  LKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRL 404

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE- 489
               + NG ++HPGA + +                S G ++D         G    N  + 
Sbjct: 405  GQLVDNGPDVHPGARYVIR---------------SSGERIDLRH----HKGGGGRNFLQW 445

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G  V RHL DGD +L NRQP+LHK S+M+H VRV+    T R++ +  + YNADFDGDEM
Sbjct: 446  GWKVERHLMDGDFILFNRQPSLHKESMMSHRVRVMP-YSTFRLNLSVTTPYNADFDGDEM 504

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ E +RAE   +       V P    PL  ++QD +     + ++D FL +++  
Sbjct: 505  NLHVPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVM 564

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
             LL                     L       VLP  PAI KP P W+GKQ+I+ V    
Sbjct: 565  NLL---------------------LWVPDWDGVLPQ-PAILKPRPRWSGKQMISMV---- 598

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
                          LP      R + DK                                
Sbjct: 599  --------------LPSGLNLLRIDKDK-------------------------------- 612

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTA 787
             P  EK +         L++  +L++  +L+ G+  K      G  +VHT+   YG +TA
Sbjct: 613  SPISEKFSP--------LADGGVLVHGGELMYGMFSKKTVGATGGGVVHTIFNEYGPDTA 664

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLI-------LKDKERERKNHLHGSEEIGKRVHL 840
             +  +   R+   +L  +GF+ G+ D +        +++  R RK  +           L
Sbjct: 665  MSFFNGAQRVVNYWLLHNGFSIGIGDTIPDLATIQKIENAVRVRKEEVDSITASATENTL 724

Query: 841  EALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGL 900
            EAL   +  E      +S++ +A+    D A    +  +     K ++++V         
Sbjct: 725  EALPGMNVRET----FESKVSRALNNARDEAGTATEKSL-----KDSNNAV--------- 766

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
                       M  SG+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D++P
Sbjct: 767  ----------QMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSP 816

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
             + GF+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD 
Sbjct: 817  ESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDG 876

Query: 1021 SVRDADGSIVQFCYGEDGVD 1040
            +VR++ G IVQF YGEDG+D
Sbjct: 877  TVRNSLGDIVQFLYGEDGLD 896



 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 62/82 (75%), Gaps = 1/82 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            N++A Q  L  ++ +F  + A PGE VG+LA+QS+GEP+TQMTLNTFH AG    NVTLG
Sbjct: 1060 NKLAFQHVLGAIESRFGKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLG 1119

Query: 1180 IPRLQEILTIASKDIKTPVITC 1201
            +PRL+EIL +A+ +IKTP +T 
Sbjct: 1120 VPRLKEILNVAT-NIKTPSMTV 1140



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 53/112 (47%), Gaps = 3/112 (2%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFK--ASRREVEKCV 58
           C TC +    CPGHFGHI+L  PV++      +  LL+ +C  C   K  AS ++    +
Sbjct: 69  CATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQKYLDAL 128

Query: 59  RKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVR 110
           R  +   + D I   S D+ L  E+  PED D   K S   V   G   NV+
Sbjct: 129 RFRDPKKRFDAIWRLSKDI-LVCEADPPEDDDPFAKESSKPVQGHGGCGNVQ 179


>gi|406603917|emb|CCH44586.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
          Length = 1688

 Score =  326 bits (836), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 239/760 (31%), Positives = 370/760 (48%), Gaps = 146/760 (19%)

Query: 292  IKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVL 351
            I F    +G D +     T  LS +++ANI +    ++   + + ++  + +L Q     
Sbjct: 209  ISFNDTQRGEDDL-----TYKLSDIMKANINVQKLEMD--GSPQHVINEFESLLQFHVAT 261

Query: 352  FDGKNAAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
            +   + AGQ        R + S I   L+ KEG  R  LMGKRV+++ R+VIS DP L +
Sbjct: 262  YMDNDIAGQPQALQKSGRPIKS-IRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLEL 320

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL-DKLSTMRLPPNKKM 462
            +++G+P   A  LTYPE VTP+N+ KL + + NG   HPGA + + D    + L  NK+ 
Sbjct: 321  DQVGVPKSIARTLTYPETVTPYNIHKLTELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRA 380

Query: 463  RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
                        G IV           G  V RHL D D VL NRQP+LHK S+MAH V+
Sbjct: 381  ------------GDIVLQ--------YGWKVERHLMDNDPVLFNRQPSLHKMSMMAHRVK 420

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            V+    T R++ +  S YNADFDGDEMN+H PQ E +RAE  NI     Q V P +  P 
Sbjct: 421  VMP-YSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELMNIAAVPLQIVSPQSNKPC 479

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
              ++QD +     +T +D+F++ D+   +LY               PG   ++ +     
Sbjct: 480  MGIVQDTLAGVRKMTLRDSFIDYDQMMNILY-------------WIPGWNGVVPQ----- 521

Query: 643  LPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRK 702
                P I KP+PLWTGKQ+++                    +P+     R++ +  +   
Sbjct: 522  ----PTILKPKPLWTGKQMLSMA------------------IPKGIHMQRYD-EGTTLLS 558

Query: 703  KNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRG 762
             ND G +                VV+G+                            ++ G
Sbjct: 559  PNDNGMM----------------VVDGQ----------------------------IMFG 574

Query: 763  VIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDK 820
            V+DK      + GL+HTV    G      L  +L ++   +   +GF+ G+ D +     
Sbjct: 575  VVDKKTVGATNGGLIHTVMREKGPKVCSELFGSLQKVVNFWFLHNGFSIGIGDTIADAST 634

Query: 821  ERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMT 880
             +E  + +  ++E    V LEA + +  A+   + L+   E       D  + Y +    
Sbjct: 635  MKEITDAIALAKEKVDDVTLEAQQNKLTAK-HGMTLRESFE-------DNVIRYLN---- 682

Query: 881  SQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKR 940
               +K   S+ +N       LK    N +  M ++G+KGS +N  Q+S+ +GQQ +EGKR
Sbjct: 683  EARDKAGRSAEVN-------LKSL--NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKR 733

Query: 941  VPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRS 1000
            +    + +TLP F   D++P + GF+ + +L GL PQE+YFH M GREGL+DTAVKT+ +
Sbjct: 734  IAFGFADRTLPHFAKDDYSPESKGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAET 793

Query: 1001 GYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            GY+QR L+K LE + + YD + R++ G+I+QF YGEDG+D
Sbjct: 794  GYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFIYGEDGLD 833



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 55/73 (75%), Gaps = 1/73 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F  S+  PGE VG++A+QS+GEP+TQMTLNTFH AG     VT G+PRL+EIL +A
Sbjct: 1008 IESQFQRSVVHPGEMVGVVAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA 1067

Query: 1191 SKDIKTPVITCPL 1203
             K++KTP +T  L
Sbjct: 1068 -KNMKTPSLTVYL 1079



 Score = 47.8 bits (112), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 1  CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
          C+TCG+    CPGHFGHI+L  PV++    + +  + + +C  C
Sbjct: 26 CQTCGEGMNECPGHFGHIELAKPVFHIGFISKIKKVCECVCMHC 69


>gi|329132889|gb|AEB78335.1| Rpb1, partial [Jakoba libera]
          Length = 1040

 Score =  326 bits (836), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 216/708 (30%), Positives = 336/708 (47%), Gaps = 145/708 (20%)

Query: 344  LQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
            LQ  +    D + A     +   I Q L+ K G  R  LMGKRV+++ RSVI+ DP L +
Sbjct: 222  LQFHLFTFVDNELAGKSGKVLKSISQRLKGKSGRIRNNLMGKRVDFSARSVITADPILEI 281

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMR 463
            +++G+P   A  +T PE VTP+N+ +L++ + +G  +HPGA                   
Sbjct: 282  DQVGVPVDIAKIMTVPEVVTPFNIKRLQELVNHGPSVHPGA------------------- 322

Query: 464  ISIGRKLDTSRGAIVQPGKDSDNEFE-------GKMVYRHLQDGDVVLVNRQPTLHKPSI 516
                      R   ++ G   D EF        G  V RHL+D DVVL NRQPTLH+  +
Sbjct: 323  ----------RFVFMEDGTRQDLEFSPNFPLAYGYTVERHLEDNDVVLFNRQPTLHRMGM 372

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            M H V+ +K  KT R++ +  S YNADFDGDEMN+H PQ  +++AE   ++      + P
Sbjct: 373  MGHRVKTMKF-KTFRLNLSVTSPYNADFDGDEMNLHAPQSLLTKAELLELMMIPKNMISP 431

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
             +  P+  L+QD +++   +T +D FL RD F   L         +  F G+        
Sbjct: 432  KSNSPVMGLVQDSLLACRRITLRDVFLERDHFMNCLM-------WVDDFDGQ-------- 476

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
                  LP+ PAI KP+PLWTGKQ+ + +                               
Sbjct: 477  ------LPM-PAILKPKPLWTGKQLFSQI------------------------------- 498

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
                        L K N   + K   + E     PG+ +                ++I +
Sbjct: 499  ------------LPKVNLRLRSKDHPRSENTLVSPGDTQ----------------VIIEQ 530

Query: 757  NDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             +L+ G   K     +   LVH V    G      ++  + RL   +L   GF+ G+ D 
Sbjct: 531  GELLAGKCCKNTMGTSQGSLVHVVYTEQGPEVCARMMGQVQRLVNYWLLTVGFSIGIGDC 590

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
            +                +EI  R   EA+  +D  ++  +  +    K  +  G   +  
Sbjct: 591  V---------------PDEITMRTITEAIT-DDKKQVTGVIKELHKRKLEKKPGLTLLES 634

Query: 875  FDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
            F+  +  +LN  +  + +   E LSE       +N    M T+G+KG+++N  Q+ + +G
Sbjct: 635  FEAVVNDKLNQARDKAGNAALESLSE-------RNNFKNMVTAGSKGNELNISQVIACVG 687

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ +EG+R+P     +TLP F   ++ P + GF+ + +L+GL PQE++FH M GREG++D
Sbjct: 688  QQNVEGRRIPFGFRNRTLPHFRQENYGPESKGFVSNSYLSGLTPQEFFFHSMGGREGIID 747

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            TAVKTS +GY+QR L+K +E + + YD +VRDA G ++QF YGEDG+D
Sbjct: 748  TAVKTSETGYIQRRLVKAMEDIMVRYDGTVRDARGKVLQFVYGEDGLD 795



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 54/85 (63%)

Query: 1097 AYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGE 1156
             Y+ E+    K  +++   K+  ++ + +  +  ++ +F  +L  PGE VG++A+QSVGE
Sbjct: 955  TYLFEIYLRTKLASKRVIQKYHLDKQSFEWLISEIRTRFFQALITPGECVGVIAAQSVGE 1014

Query: 1157 PSTQMTLNTFHLAGRGEMNVTLGIP 1181
            P+TQMTLNTFH AG    NVT G+P
Sbjct: 1015 PATQMTLNTFHFAGVSAKNVTXGVP 1039


>gi|171677863|ref|XP_001903882.1| hypothetical protein [Podospora anserina S mat+]
 gi|170937000|emb|CAP61658.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1521

 Score =  326 bits (836), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 242/785 (30%), Positives = 375/785 (47%), Gaps = 118/785 (15%)

Query: 267  DMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVM-EHPQTVLLSKVLQANIYLA 324
            D +  G     G    FL   L  PP+  R PS   +S   E   T  L++++  + +L 
Sbjct: 253  DCELLGLDPAEGRPEMFLWRYLPAPPLCIR-PSVAQESASNEDDITTKLAEIVIYSAHLR 311

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVNVLFD----GKNAAGQRDMASGICQLLEKKEGLFRQ 380
             A +        ++ +W  LQ  V +  +    G    G   +  G CQ L+ K+G FR 
Sbjct: 312  EAMLKGAP-LPSLMEQWEFLQLQVGMYVNSDVPGLVQQGFGKVTRGFCQRLKGKQGRFRG 370

Query: 381  KLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEI 440
             L GKRV+++ R+VISPDP L++ ++ +P   A  LTYPERV   N+ KL+  + NG   
Sbjct: 371  NLSGKRVDFSGRTVISPDPNLSIEQVAVPERVAKNLTYPERVHANNIQKLKACVRNGPTE 430

Query: 441  HPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDG 500
            +PGA         +++  N+     +   L   +  I++  K++DN   G +V RHL+D 
Sbjct: 431  YPGA---------LQITKNQGEENEMKFLLKHMKPHILE--KNADNLRIGDVVERHLEDN 479

Query: 501  DVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSR 560
            D+VL NRQP+LHK SIM+H  ++ +  +T R++   CS YNADFDGDEMN+H PQ E +R
Sbjct: 480  DIVLFNRQPSLHKLSIMSHYAKI-RPWRTFRLNECVCSPYNADFDGDEMNLHVPQTEEAR 538

Query: 561  AEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSS 620
            AEA N++   N    P NG+P+ +  QD I +A LL+ KD F +R  F  +         
Sbjct: 539  AEAINLMGVKNNLCTPKNGEPIIAATQDFITAAYLLSGKDRFYDRSSFTYIC-------- 590

Query: 621  GLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVER 680
                       ++L+  +  E+ P  PAI KP+ LWTGKQ+   ++              
Sbjct: 591  ----------TQMLLGDTYLELPP--PAILKPKALWTGKQIFNVMMR------------- 625

Query: 681  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
                P        N D ++  K  +KG L                               
Sbjct: 626  ----PNKESPVLVNLDAKN--KVYNKGNL------------------------------- 648

Query: 741  KSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRL 797
            +  + ++ +  L++  ++++ G +DK+   +     + + +   YG++ A   ++ L++L
Sbjct: 649  QPPDMDIDDSFLVVRNSEVICGRMDKSTVGEGKKNSVFYVILRDYGADYAAATMNRLAKL 708

Query: 798  FTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEI--GKRVHLEALELEDGAEIDPIK 855
                L + GF+ GV D+   +     +   L  +  +  G     E   LE     D   
Sbjct: 709  CARSLTLRGFSIGVGDVFPSQALTEHKLMLLEKATTVCDGFISQAENGTLEKAPGCD--- 765

Query: 856  LKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTS 915
            +K  +E  + G   A              +  + S   E LS         N   +M  S
Sbjct: 766  MKETLETKLSGTLSAV-------------RQAAGSYCTENLSRN-------NAPLIMAKS 805

Query: 916  GAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLR 975
            G+KGS++N  Q+ + +GQQ + GKRV      +TLP F   D    A GF+ + F TGL 
Sbjct: 806  GSKGSEINVAQMIACVGQQIIGGKRVADGFQNRTLPHFEKGDKRAAAKGFVKNSFYTGLH 865

Query: 976  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYG 1035
            P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR ++G IVQF YG
Sbjct: 866  PTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSEGGIVQFQYG 925

Query: 1036 EDGVD 1040
             D +D
Sbjct: 926  ADRLD 930



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 1100 MELPDALKDNAEKFADKFLS-NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPS 1158
            ++L D  +   +K AD     +E + + F++L   K+  +  +PG  VG + +QS+GEP 
Sbjct: 1073 IDLDDEARAKGQKHADLTAKVSEASLRKFIELCLEKYKKAQVEPGHAVGAVGAQSIGEPG 1132

Query: 1159 TQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            TQMTL TFH AG   M++T G+PR++EI+  ASK I TPVITC L
Sbjct: 1133 TQMTLKTFHFAGVAGMSITQGVPRIKEIIN-ASKTISTPVITCVL 1176



 Score = 46.2 bits (108), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C TC Q    CPGHFGH+ L +PV++      +   L+ IC  C     +  E
Sbjct: 83  CHTCHQDLMGCPGHFGHVKLPLPVFHIGYLKYIQATLQNICKSCSRILLTNEE 135


>gi|342306129|dbj|BAK54218.1| DNA-directed RNA polymerase subunit A' [Sulfolobus tokodaii str. 7]
          Length = 880

 Score =  326 bits (836), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 262/857 (30%), Positives = 401/857 (46%), Gaps = 157/857 (18%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P  F +++      L PSD+++ +E++ ++++EL  +     +  +          L V+
Sbjct: 161  PYNFYEERKEGVIRLTPSDIRERLERIPDSDYELLGYDPKYSRPEW--------MILTVL 212

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
             VPPI  R PS   +S +  E   T  L  +++ N  L  + ++      +I   W  LQ
Sbjct: 213  PVPPITIR-PSITIESGIRAEDDLTHKLVDIIRINERLKES-IDAGAPQLIIEDLWDLLQ 270

Query: 346  QSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDP 399
              V+  FD    G   A  R       + Q L+ KEG FR  L GKRV+++ R+VISPDP
Sbjct: 271  YHVSTYFDNEIPGIPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDP 330

Query: 400  YLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPN 459
             ++++E+G+P   A  LT PERVT  N+ ++R  +ING E  PGA + +         P+
Sbjct: 331  NISIDEVGVPVAIAKTLTVPERVTKMNIERMRQYVINGPEKWPGANYVIR--------PD 382

Query: 460  KKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
                   GR++D      V+  K+  +    G +V RHL DGD+VL NRQP+LH+ S+M 
Sbjct: 383  -------GRRIDLR---YVKDRKELASSLTPGYIVERHLIDGDIVLFNRQPSLHRISMMG 432

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H V+VL G +T R++   C  YNADFDGDEMN+H PQ E + AEA  I+  +   + P  
Sbjct: 433  HKVKVLPG-RTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHRNIITPRY 491

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            G P+    QD+I  A LLT K T L R+E   +L        G+  F G+ G+       
Sbjct: 492  GGPIMGGAQDYISGAYLLTVKTTLLTREEVTTIL--------GVTDFMGEIGE------- 536

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
                    PAI  P   +TGKQ+++                    LP+D     FN   Q
Sbjct: 537  --------PAILAPREYYTGKQIVSLF------------------LPKD-----FNFHGQ 565

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND 758
            ++  K  +                                    K +    +  ++ KN 
Sbjct: 566  ANISKGFRA----------------------------------CKNEVCPHDSYIVIKNG 591

Query: 759  -LVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             L+ GV+DK    +     ++H +   YG+     ++  + +LF  F+++ GFT  +DD+
Sbjct: 592  ILLEGVLDKKAIGNQQPESILHWLVREYGTEYGRWVMDNVFKLFIRFIELRGFTMTLDDV 651

Query: 815  LI----LKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI---KLKSEIEKAMRGG 867
             I     K+ + + +      EE+ K+ +   LEL  G   +      +   +++  +  
Sbjct: 652  TIPPQAFKEIDEQIEVAYKKVEELIKQYNEGTLELIPGRTAEESLEDHILETLDQLRKVA 711

Query: 868  GDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQI 927
            GD A  Y D                              N + +M  +GA+GS++N  Q+
Sbjct: 712  GDIATKYLD----------------------------PFNNVYIMAVTGARGSELNITQM 743

Query: 928  SSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGR 987
            ++ LGQQ + G+R+ R    +TLP F P D +P A GF+ + F  GL P E +FH   GR
Sbjct: 744  TAMLGQQSVRGERIKRGYMTRTLPHFKPGDISPDARGFVHNSFTRGLTPIEMFFHAAGGR 803

Query: 988  EGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFI 1047
            EGLVDTAVKTS+SGY+QR LI  L  L++ YD +VR   G +++  YGED V    +S  
Sbjct: 804  EGLVDTAVKTSQSGYMQRRLINALSDLRVEYDGTVRSLYGEVIELAYGEDEVHPMYSSHG 863

Query: 1048 SKFDALAARERGRGRGR 1064
               D     ER  G  R
Sbjct: 864  KTVDVNRIIERVVGWKR 880



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVR 59
           C TCG     CPGHFGHI+LV PV +      +Y +L+  C  C   K    ++++  R
Sbjct: 58  CPTCGNTLNGCPGHFGHIELVRPVIHVGFVKHVYDILRATCRHCGRLKIKEEDLQRYSR 116


>gi|195175545|ref|XP_002028504.1| GL19707 [Drosophila persimilis]
 gi|194104024|gb|EDW26067.1| GL19707 [Drosophila persimilis]
          Length = 968

 Score =  326 bits (835), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 301/1068 (28%), Positives = 460/1068 (43%), Gaps = 256/1068 (23%)

Query: 1    CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
            C+TCG     C GHFG++DL +PV                 F   HF+A+       +  
Sbjct: 67   CETCGHGLNECIGHFGYLDLALPV-----------------FHIGHFRAT-------INI 102

Query: 61   LELIIK--GDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWT 118
            L++I K    ++      L    +  NP  S +  K+                L  Q   
Sbjct: 103  LQMICKSCAQVMLKFEDRLSFEKKLHNPNFSYLGKKA----------------LHAQ--- 143

Query: 119  SLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNL 178
                A+AK         + TKC +C   N  + K   G + +   P+   + + +   N+
Sbjct: 144  --MLAKAK---------KVTKCPHCGTANGGVKKGP-GLLKILHDPYKGRKVDAVFTSNM 191

Query: 179  GETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLF 238
             E     E  +DL  +                                  S +   ++L 
Sbjct: 192  DEMLRSTEFNRDLNLTL---------------------------------SNYSTAEEL- 217

Query: 239  SGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS 298
              PL+   V D+ E++ +++  L    S       G    H I  +  V VPP   R PS
Sbjct: 218  -TPLM---VLDLFEQIPQSDVALLGMCSR------GAHPKHLI--VTRVFVPPACIR-PS 264

Query: 299  -----KGG----DSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVN 349
                 K G    D  M+  + +L++ V+Q ++             ++I   W  LQ  V 
Sbjct: 265  VLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGG-------KIELIYEDWDFLQLHVA 317

Query: 350  VLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVN 404
            + F  + +    +MA      GI Q L+ K+G FR  L GKRV+++ R+VISPDP L +N
Sbjct: 318  LYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMIN 377

Query: 405  EIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRI 464
            ++G+P   A  LTYPERV   N+  ++  + NG   HPGA +   + S+       K  +
Sbjct: 378  QVGVPVRVAKILTYPERVNLANIRHMKHLVRNGPGTHPGANYVQQRGSSF------KKYL 431

Query: 465  SIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVL 524
            + G     +R  + Q  K  D      +V RHL D D+VL NRQP+LHK SIM H  +V 
Sbjct: 432  AYG-----NREKVAQELKCGD------IVERHLCDNDIVLFNRQPSLHKMSIMCHRAKV- 479

Query: 525  KGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRS 584
            + ++T R +   C+ YNADFDGDEMN+H PQ E +RAEA  ++   +  V P NG+ L +
Sbjct: 480  QPQRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIA 539

Query: 585  LIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLP 644
              QD I    LLT+K+ FL ++E  QL             F       + I       +P
Sbjct: 540  ATQDFITGGYLLTQKEVFLTKEEAMQL----------AACFLDNEDSTMNIQ------IP 583

Query: 645  LLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKN 704
              PA+ KP  LWTGKQ+ + ++      RP                   N+D        
Sbjct: 584  -APALLKPRRLWTGKQIFSLLM------RP-------------------NSDSHIRLNMV 617

Query: 705  DKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVI 764
            +KG+                                K+ +  +++  + I  ++L+ GV+
Sbjct: 618  NKGR-----------------------------NYTKNMDLCINDSWIHIRNSELMCGVM 648

Query: 765  DKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKE 821
            DKA         + + +   +G   A   +  L+R+ + F+Q  GF+ G+ D+       
Sbjct: 649  DKATMGSGTKQCIFYLLLRDFGEAHATKAMWRLARITSYFIQNLGFSFGISDV------- 701

Query: 822  RERKNHLHGSEEIGKR---------VHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
               +  LH  E + +R          HL++  L+      P   K  +E  M        
Sbjct: 702  TPSQKLLHHKEILLERGYAKCNDYIEHLKSGTLQCQPGCTP---KETLESVM-------- 750

Query: 873  AYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
                ++  S + +  + +   E      L PT  N   +M  SG+KGS +N  Q+ + +G
Sbjct: 751  ----LRELSGIREQAAKTCFAE------LHPT--NSALIMALSGSKGSNINISQMIACVG 798

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ + GKRVP     + LP F      P A GF+ + F +GL P E++FH MAGREGLVD
Sbjct: 799  QQAISGKRVPNGFENRALPHFDRHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVD 858

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            TAVKT+ +GYLQR L+K LE L + YD +VR+A   +V   YG DG+D
Sbjct: 859  TAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNAVSEMVDTIYGGDGLD 906


>gi|116874718|emb|CAJ75797.1| RNA polymerase I subunit B [Geosiphon pyriformis]
          Length = 649

 Score =  326 bits (835), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 222/679 (32%), Positives = 335/679 (49%), Gaps = 139/679 (20%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VI+ DP ++V+E+G+P   A  LTYPE VTP+N+  L
Sbjct: 100  LKGKEGRLRGNLMGKRVDFSARTVITGDPNISVDEVGVPRSIARNLTYPELVTPYNIEHL 159

Query: 431  RDSIINGAEIHPGATHYL-DKLSTMRLPPNKK---MRISIGRKLDTSRGAIVQPGKDSDN 486
            ++ + NG   HPGA + + D    + L  +K+   +R+  G K++               
Sbjct: 160  QELVRNGPTEHPGAKYVIRDTGERIDLKHHKRAGEVRLQYGWKVE--------------- 204

Query: 487  EFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDG 546
                    RHL DGDVV+ NRQP+LHK S+M H VRV+    T R++ +  S YNADFDG
Sbjct: 205  --------RHLNDGDVVIFNRQPSLHKMSMMGHKVRVMP-YSTFRLNLSVTSPYNADFDG 255

Query: 547  DEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRD 606
            DEMN+H PQ   +RAE   I     Q V P +  P+  ++QD + +    TK+D FL+RD
Sbjct: 256  DEMNMHVPQSVETRAEITEICMVPKQIVSPQSNKPVMGIVQDTLCAVRKFTKRDCFLSRD 315

Query: 607  EFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL 666
                +L         +  + G+      I R         P I KP P+WTGKQ+++   
Sbjct: 316  LVMNILM-------WVPEWDGR------IPR---------PCIIKPIPMWTGKQILS--- 350

Query: 667  NHITRGRPPFVVERGGKLPQDFFKTRFNADK-QSDRKKNDKGKLSKTNKMHKDKSGKKKE 725
                      ++ +G            N D   S   +N+K  +S               
Sbjct: 351  ---------LIIPKG-----------INCDGFHSGHPENEKSDIS--------------- 375

Query: 726  VVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYG 783
                 PG                + K+LI    ++ G+I K     +  GLVH + +  G
Sbjct: 376  -----PG----------------DTKVLIEDGQVLCGIICKKTVGTSQQGLVHVIMQELG 414

Query: 784  SNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL 843
            S  A   L+    +   +L  HGF+ G+ D +  KD                    +E +
Sbjct: 415  SEAAKKFLNGCQTVVNNWLLQHGFSIGIGDTIADKDT-------------------METI 455

Query: 844  ELEDGA---EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGL 900
                GA    +  I LK++ +      G      F+  +  +LN    S+  +   +E  
Sbjct: 456  TQTIGAAKSRVQEIILKAQQDNLKCEPGMTIRESFEHHVNRELNTARDSAGRS---AERS 512

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
            L+   +N +  M  SG+KGS +N  Q+S+ +GQQ +EGKR+P     +TLP F   D +P
Sbjct: 513  LRE--ENNVKQMVVSGSKGSFINISQMSACVGQQNVEGKRIPFGFKFRTLPHFTKDDHSP 570

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
             + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY+QR L+K LE + + YD 
Sbjct: 571  ESRGFVENSYLRGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDG 630

Query: 1021 SVRDADGSIVQFCYGEDGV 1039
            +VR++ G ++QFCYGEDG+
Sbjct: 631  TVRNSLGDVIQFCYGEDGM 649


>gi|19112465|ref|NP_595673.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe
            972h-]
 gi|548817|sp|P36594.1|RPB1_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb1; Short=RNA
            polymerase II subunit 1; Short=RNA polymerase II subunit
            B1; AltName: Full=DNA-directed RNA polymerase III largest
            subunit
 gi|256599715|pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
 gi|256599727|pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
 gi|5055|emb|CAA39916.1| RNA polymerase II large subunit [Schizosaccharomyces pombe]
 gi|6018696|emb|CAB57941.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe]
          Length = 1752

 Score =  326 bits (835), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 243/767 (31%), Positives = 368/767 (47%), Gaps = 142/767 (18%)

Query: 298  SKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV-IVARWMNLQQSVNVLFDGKN 356
            S  G S  E   T  LS +++AN   AN    + + A   IV+ +  L Q     +    
Sbjct: 257  SVDGTSRGEDDLTHKLSDIIKAN---ANVRRCEQEGAPAHIVSEYEQLLQFHVATYMDNE 313

Query: 357  AAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGI 408
             AGQ        R + S I   L+ KEG  R  LMGKRV+++ R+VI+ DP L+++E+G+
Sbjct: 314  IAGQPQALQKSGRPLKS-IRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDELGV 372

Query: 409  PPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGR 468
            P   A  LTYPE VTP+N+ +L++ + NG + HPGA + +                  G 
Sbjct: 373  PRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYIIR---------------DTGE 417

Query: 469  KLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK 528
            ++D       +   D    + G  V RH++DGDVV+ NRQP+LHK S+M H +RV+    
Sbjct: 418  RIDLRYH---KRAGDIPLRY-GWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMP-YS 472

Query: 529  TLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQD 588
            T R++ +  S YNADFDGDEMN+H PQ E +RAE   I     Q V P +  P+  ++QD
Sbjct: 473  TFRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQD 532

Query: 589  HIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPA 648
             +      + +D FL R+    ++                     L       +LP  P 
Sbjct: 533  TLAGVRKFSLRDNFLTRNAVMNIM---------------------LWVPDWDGILPP-PV 570

Query: 649  IWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
            I KP+ LWTGKQ+++             ++ +G  L +D        DKQS     D G 
Sbjct: 571  ILKPKVLWTGKQILS------------LIIPKGINLIRD-------DDKQSLSNPTDSG- 610

Query: 709  LSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQ 768
                                                       +LI   +++ GV+DK  
Sbjct: 611  -------------------------------------------MLIENGEIIYGVVDKKT 627

Query: 769  F--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKN 826
               +  GLVHT+ +  G        + + R+   +L  +GF+ G+ D +   D  +E   
Sbjct: 628  VGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMKEVTR 687

Query: 827  HLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKH 886
             +       K    +  E    A+ +  +LK E    +R   +A V+    ++ +Q   +
Sbjct: 688  TV-------KEARRQVAECIQDAQHN--RLKPEPGMTLRESFEAKVS----RILNQARDN 734

Query: 887  TSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVS 946
               S      +E  LK +  N +  M  +G+KGS +N  Q+S+ +GQQ +EGKR+P    
Sbjct: 735  AGRS------AEHSLKDS--NNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFK 786

Query: 947  GKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRC 1006
             +TLP F   D +P + GFI + +L GL PQE++FH MAGREGL+DTAVKT+ +GY+QR 
Sbjct: 787  YRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRR 846

Query: 1007 LIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDAL 1053
            L+K +E + + YD +VR+A G I+QF YGEDG+D     +   FD+L
Sbjct: 847  LVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEY-QVFDSL 892



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 63/85 (74%), Gaps = 1/85 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            N++A +  +  V+ +F  ++  PGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG
Sbjct: 1041 NKVAFEWIMGEVEARFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLG 1100

Query: 1180 IPRLQEILTIASKDIKTPVITCPLL 1204
            +PRL+EIL +A K+IKTP +T  L+
Sbjct: 1101 VPRLKEILNVA-KNIKTPSLTIYLM 1124



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFK 48
           C+TCG+    CPGHFGHI+L  PV++    + +  +L+ +C+ C   K
Sbjct: 69  CQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLK 116


>gi|15920465|ref|NP_376134.1| DNA-directed RNA polymerase subunit A' [Sulfolobus tokodaii str. 7]
          Length = 884

 Score =  326 bits (835), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 262/857 (30%), Positives = 401/857 (46%), Gaps = 157/857 (18%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
            P  F +++      L PSD+++ +E++ ++++EL  +     +  +          L V+
Sbjct: 165  PYNFYEERKEGVIRLTPSDIRERLERIPDSDYELLGYDPKYSRPEW--------MILTVL 216

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
             VPPI  R PS   +S +  E   T  L  +++ N  L  + ++      +I   W  LQ
Sbjct: 217  PVPPITIR-PSITIESGIRAEDDLTHKLVDIIRINERLKES-IDAGAPQLIIEDLWDLLQ 274

Query: 346  QSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDP 399
              V+  FD    G   A  R       + Q L+ KEG FR  L GKRV+++ R+VISPDP
Sbjct: 275  YHVSTYFDNEIPGIPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDP 334

Query: 400  YLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPN 459
             ++++E+G+P   A  LT PERVT  N+ ++R  +ING E  PGA + +         P+
Sbjct: 335  NISIDEVGVPVAIAKTLTVPERVTKMNIERMRQYVINGPEKWPGANYVIR--------PD 386

Query: 460  KKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMA 518
                   GR++D      V+  K+  +    G +V RHL DGD+VL NRQP+LH+ S+M 
Sbjct: 387  -------GRRIDLR---YVKDRKELASSLTPGYIVERHLIDGDIVLFNRQPSLHRISMMG 436

Query: 519  HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
            H V+VL G +T R++   C  YNADFDGDEMN+H PQ E + AEA  I+  +   + P  
Sbjct: 437  HKVKVLPG-RTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHRNIITPRY 495

Query: 579  GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
            G P+    QD+I  A LLT K T L R+E   +L        G+  F G+ G+       
Sbjct: 496  GGPIMGGAQDYISGAYLLTVKTTLLTREEVTTIL--------GVTDFMGEIGE------- 540

Query: 639  EQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQ 698
                    PAI  P   +TGKQ+++                    LP+D     FN   Q
Sbjct: 541  --------PAILAPREYYTGKQIVSLF------------------LPKD-----FNFHGQ 569

Query: 699  SDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKND 758
            ++  K  +                                    K +    +  ++ KN 
Sbjct: 570  ANISKGFRA----------------------------------CKNEVCPHDSYIVIKNG 595

Query: 759  -LVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             L+ GV+DK    +     ++H +   YG+     ++  + +LF  F+++ GFT  +DD+
Sbjct: 596  ILLEGVLDKKAIGNQQPESILHWLVREYGTEYGRWVMDNVFKLFIRFIELRGFTMTLDDV 655

Query: 815  LI----LKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI---KLKSEIEKAMRGG 867
             I     K+ + + +      EE+ K+ +   LEL  G   +      +   +++  +  
Sbjct: 656  TIPPQAFKEIDEQIEVAYKKVEELIKQYNEGTLELIPGRTAEESLEDHILETLDQLRKVA 715

Query: 868  GDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQI 927
            GD A  Y D                              N + +M  +GA+GS++N  Q+
Sbjct: 716  GDIATKYLD----------------------------PFNNVYIMAVTGARGSELNITQM 747

Query: 928  SSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGR 987
            ++ LGQQ + G+R+ R    +TLP F P D +P A GF+ + F  GL P E +FH   GR
Sbjct: 748  TAMLGQQSVRGERIKRGYMTRTLPHFKPGDISPDARGFVHNSFTRGLTPIEMFFHAAGGR 807

Query: 988  EGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFI 1047
            EGLVDTAVKTS+SGY+QR LI  L  L++ YD +VR   G +++  YGED V    +S  
Sbjct: 808  EGLVDTAVKTSQSGYMQRRLINALSDLRVEYDGTVRSLYGEVIELAYGEDEVHPMYSSHG 867

Query: 1048 SKFDALAARERGRGRGR 1064
               D     ER  G  R
Sbjct: 868  KTVDVNRIIERVVGWKR 884



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVR 59
           C TCG     CPGHFGHI+LV PV +      +Y +L+  C  C   K    ++++  R
Sbjct: 62  CPTCGNTLNGCPGHFGHIELVRPVIHVGFVKHVYDILRATCRHCGRLKIKEEDLQRYSR 120


>gi|397135926|gb|AFO11458.1| RNA polymerase I, partial [Sporopachydermia lactativora]
          Length = 871

 Score =  325 bits (834), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 242/743 (32%), Positives = 362/743 (48%), Gaps = 149/743 (20%)

Query: 319  ANIYLANAYVN---QPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDM-------ASGIC 368
            A+I  ANA V    Q    + + + + NL Q     +   + AGQ             I 
Sbjct: 80   ADILKANAQVQRCEQEGAPQHVTSEFENLLQFHVATYMDNDIAGQPQALHKSGRPIKAIR 139

Query: 369  QLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVV 428
              L+ KEG  R  LMGKRV+++ R+VIS DP L ++++G+P   A  LTYPE VTP+N+ 
Sbjct: 140  ARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPRSIARTLTYPETVTPYNIQ 199

Query: 429  KLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEF 488
            +L + + NG   HPGA  Y+ + S  R+      R                   D   +F
Sbjct: 200  RLSELVRNGPNEHPGA-RYVIRDSGDRIDLRYHKR-----------------AGDIALQF 241

Query: 489  EGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 548
             G  V RH+ DGD VL NRQP+LHK S+MAH V+V+    T R++ +  S YNADFDGDE
Sbjct: 242  -GWKVERHINDGDPVLFNRQPSLHKMSMMAHRVKVMP-YSTFRLNLSVTSPYNADFDGDE 299

Query: 549  MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
            MN+H PQ E +RAE   +     Q V P +  P+  ++QD +     +T +D F+  D+ 
Sbjct: 300  MNLHVPQSEEARAELSQLCLVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFIEYDKV 359

Query: 609  CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
              L Y        +  + G              V+P  PAI KP+PLWTGKQ+++     
Sbjct: 360  MNLCY-------WIPEWDG--------------VIP-QPAILKPKPLWTGKQMVS----- 392

Query: 669  ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLS-KTNKMHKDKSGKKKEVV 727
                     + +G  L                ++ +DK +L+ K N M          ++
Sbjct: 393  -------MAIPKGIHL----------------QRVDDKNRLNPKDNSML---------II 420

Query: 728  EGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSN 785
            +G+                      +IY      GV+DK        G++HT+++  G  
Sbjct: 421  DGE----------------------IIY------GVVDKKSVGATSGGIIHTIRQSKGPQ 452

Query: 786  TAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGS----EEIGKRVHLE 841
             A      + +L   +L  +GF+ G+ D +      RE    +  +    EEI  +   +
Sbjct: 453  VAAKFFGNVQKLVNYWLLHNGFSIGIGDTIADASTMREITTTIADAKKKVEEITLKAQRD 512

Query: 842  ALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLL 901
             LEL  G     + L+S                F+  +TS LN+   ++  +   SE  L
Sbjct: 513  ELELLPG-----MTLRST---------------FESLVTSVLNQARDNAGKS---SEVNL 549

Query: 902  KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 961
            K    N +  M  +G+KGS +N  Q+S+ +GQQ +EGKRVP   + +TLP F   D++P 
Sbjct: 550  K--NDNNVKQMVVAGSKGSFINISQMSACVGQQIVEGKRVPFGFADRTLPHFTKDDYSPE 607

Query: 962  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1021
            + GF+ + +L GL PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD +
Sbjct: 608  SKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGT 667

Query: 1022 VRDADGSIVQFCYGEDGVDVHQT 1044
             R++ G I+QF YGEDG+D  Q 
Sbjct: 668  TRNSLGDIIQFIYGEDGLDGAQV 690


>gi|418204396|gb|AFX61752.1| RNA polymerase I largest subunit, partial [Ascosphaera aggregata]
          Length = 1697

 Score =  325 bits (834), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 221/679 (32%), Positives = 336/679 (49%), Gaps = 135/679 (19%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  RQ LMGKRV+++ R+VI+ DP L+++E+G+P   A  LTY E VTP+N+ KL
Sbjct: 327  LKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAKTLTYTEIVTPYNINKL 386

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
               + NG +IHPGA + +        P  +K+ +   +     R A++Q          G
Sbjct: 387  AALVENGPDIHPGAKYIIR-------PTGEKINLGFNKGQAQGR-AMLQ---------YG 429

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RH+QDGDV+L NRQP+LHK S+MAH VRV+    T R++ +  + YNADFDGDEMN
Sbjct: 430  FKVERHIQDGDVILFNRQPSLHKESMMAHKVRVMP-YSTFRLNLSVTTPYNADFDGDEMN 488

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E S+AE   +       V P    PL  ++QD +     + ++DTFL +D    
Sbjct: 489  LHVPQSEESKAELRELALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKDHVMN 548

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            ++         +  + G              V+P  PAI KP P WTGKQ+I+ V     
Sbjct: 549  IMM-------WVPDWDG--------------VIPQ-PAILKPRPRWTGKQIISMV----- 581

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                         LP                        S  N +  DK        +G 
Sbjct: 582  -------------LP------------------------SGLNLLRLDK--------DGA 596

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAG 788
            P  E+ +         L +  + I+  +L+ G   K      G  ++HT+   YGS+ A 
Sbjct: 597  PLAERFSP--------LKDGGVFIHGGELMFGQFSKKTVGATGGGVIHTIFNEYGSDVAM 648

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLI-------LKDKERERKNHLHGSEEIGKRVHLE 841
            +  +   R+   +L  +GF+ G+ D +        +++  R+RK  +    +   R  L+
Sbjct: 649  SFFNGAQRVVNYWLLHNGFSIGIGDTIPDAATVAKIEEAVRDRKEEVDDITDDATRNALD 708

Query: 842  ALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLL 901
             L   +  E      +S++ +A+    D A       +T +  K  +  V          
Sbjct: 709  PLPGMNIRET----FESKVSRALNNARDDA-----GNVTEKSLKDCNHGV---------- 749

Query: 902  KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 961
                      M  SG+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F   D++P 
Sbjct: 750  ---------QMARSGSKGSTINISQMMAIVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPE 800

Query: 962  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1021
            + GF+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD +
Sbjct: 801  SRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGT 860

Query: 1022 VRDADGSIVQFCYGEDGVD 1040
            VR++ G ++QF YGEDG+D
Sbjct: 861  VRNSLGDVIQFIYGEDGLD 879



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 87/135 (64%), Gaps = 8/135 (5%)

Query: 1075 FVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHK 1134
             V+ R  ++I ++   Q +A+  ++ +L   L     +   ++  N++A Q  L  ++++
Sbjct: 1002 LVIVRGDDIISREA--QENATLLFMCQLRSRLA--FRRLVVEYSLNKLALQHVLGAIENR 1057

Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
            F  ++A PGE VG+LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EIL +A K+I
Sbjct: 1058 FARAVANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVA-KNI 1116

Query: 1195 KTPVIT---CPLLVG 1206
            KTP +T    P L G
Sbjct: 1117 KTPSMTVYQVPELAG 1131



 Score = 48.5 bits (114), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           C TC +    CPGHFGHI+L  PV++      +  LL+ +C  C   K ++ +
Sbjct: 51  CATCEEGINECPGHFGHIELASPVFHIGFLTKIKKLLETVCLNCGKIKVNQND 103


>gi|397135804|gb|AFO11397.1| RNA polymerase I, partial [Cyberlindnera americana]
          Length = 870

 Score =  325 bits (834), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 223/673 (33%), Positives = 335/673 (49%), Gaps = 130/673 (19%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VIS DP L ++++G+P   A  LTYPE VTP+N+ KL
Sbjct: 141  LKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLTYPETVTPYNIQKL 200

Query: 431  RDSIINGAEIHPGATHYL-DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE 489
             + + NG   HPGA + + D    + L  NK+             G IV           
Sbjct: 201  TELVRNGPNEHPGAKYVIRDTGDRIDLRYNKRA------------GDIVLQ--------Y 240

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G  V RHL D D VL NRQP+LHK S+M H V+V+    T R++ +  S YNADFDGDEM
Sbjct: 241  GWKVERHLMDNDPVLFNRQPSLHKMSMMCHRVKVMP-YSTFRLNLSVTSPYNADFDGDEM 299

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ E +RAE  NI     Q V P +  P   ++QD +     +T +D+F+  D+  
Sbjct: 300  NLHVPQSEETRAELMNICAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDSFIEYDQMM 359

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
             +LY        +  + G              V+P  P I KP+PLWTGKQ+++      
Sbjct: 360  NILY-------WIPEWDG--------------VIPA-PTILKPKPLWTGKQMLSMT---- 393

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
                          +P+     RF+ +  +    ND G L                V++G
Sbjct: 394  --------------IPKGIHLQRFD-EGTTLLSPNDNGML----------------VIDG 422

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTA 787
            +                            ++ GV+DK      + GL+HTV    G    
Sbjct: 423  Q----------------------------ILFGVVDKKTVGATNGGLIHTVMREKGPRAC 454

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED 847
              L   + ++   +L  +GF+ G+ D +      +E    +  ++E  + V LEA + + 
Sbjct: 455  ADLFGNIQKVVNFWLLHNGFSIGIGDTIADAGTMKEITEAIAIAKEKVEEVTLEAQQNKL 514

Query: 848  GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKN 907
             A+   + L+   E       D  + Y +       +K   S+ +N       LK  G N
Sbjct: 515  TAK-HGMTLRESFE-------DNVIRYLN----EARDKAGRSAEVN-------LK--GLN 553

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
             +  M ++G+KGS +N  Q+S+ +GQQ +EGKR+    + +TLP F   D++P + GF+ 
Sbjct: 554  NVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVE 613

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
            + +L GL PQE+YFH M GREGL+DTAVKT+ +GY+QR L+K LE + + YD + R++ G
Sbjct: 614  NSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSMG 673

Query: 1028 SIVQFCYGEDGVD 1040
            +I+QF YGEDG+D
Sbjct: 674  NIIQFIYGEDGLD 686


>gi|389626659|ref|XP_003710983.1| DNA-directed RNA polymerase III subunit RPC1 [Magnaporthe oryzae
            70-15]
 gi|351650512|gb|EHA58371.1| DNA-directed RNA polymerase III subunit RPC1 [Magnaporthe oryzae
            70-15]
 gi|440463479|gb|ELQ33059.1| DNA-directed RNA polymerase III subunit RPC1 [Magnaporthe oryzae Y34]
 gi|440481206|gb|ELQ61814.1| DNA-directed RNA polymerase III subunit RPC1 [Magnaporthe oryzae
            P131]
          Length = 1456

 Score =  325 bits (833), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 241/784 (30%), Positives = 372/784 (47%), Gaps = 117/784 (14%)

Query: 266  SDMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA 324
            +D +  G     G    FL   L  PPI  R   +   S  E   T  L++++     + 
Sbjct: 247  TDCELLGLDPSEGRPEMFLWQYLPAPPICIRPSVQQDTSSNEDDITTKLAEIVHIAGLIR 306

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVNVLFD----GKNAAGQRDMASGICQLLEKKEGLFRQ 380
             A +++    + I+ +W  LQ  + +  +    G    G   M  G CQ L+ K+G FR 
Sbjct: 307  GA-LSKGHPIQTIMEQWEFLQLQIAIYVNSEVPGLGQPGFGKMTRGFCQRLKGKQGRFRG 365

Query: 381  KLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEI 440
             L GKRV+++ R+VI PDP LA++++ IP   A  LTYPERV   N+ KLR+ + NG  +
Sbjct: 366  NLSGKRVDFSGRTVIGPDPNLAIDQVAIPILVAKNLTYPERVNHINIEKLRECVRNGPTV 425

Query: 441  HPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDG 500
             PGA   + +          KM +  G + D +                G +V RH++DG
Sbjct: 426  WPGANAVVKQDGDGEY----KMNLKFGDRNDVAY-----------RLRYGDVVERHIEDG 470

Query: 501  DVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSR 560
            D+VL NRQP+LHK SIM+H V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +R
Sbjct: 471  DIVLFNRQPSLHKLSIMSHFVKV-RPWRTFRLNECACTPYNADFDGDEMNLHVPQTEEAR 529

Query: 561  AEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSS 620
             EA  ++        P NG+P+ +  QD I +A L++ KD F +R  F  +         
Sbjct: 530  TEAMTLMGVKYNLATPKNGEPIIAATQDFITAAYLISLKDVFYDRKTFTYVC-------- 581

Query: 621  GLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVER 680
                      Q +L+   +   LP  PAI KP  LWTGKQV + +L      RP      
Sbjct: 582  ----------QHMLMDGKDYLDLP-PPAILKPRALWTGKQVFSMML------RP------ 618

Query: 681  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
                           +K+S  K N   K  +                + +PGE  +   N
Sbjct: 619  ---------------NKESPVKINLDAKCRE---------------YKPRPGECPDMCPN 648

Query: 741  KSKEKELSEEKLLIYKNDLVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSRL 797
                    +  L+I  ++++ G +DK+         + + +   +G + A  ++S L++L
Sbjct: 649  --------DGWLVIRNSEVMCGKMDKSIVGGGKKDSIFYVILRDFGPDHAVIVMSRLAKL 700

Query: 798  FTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLK 857
                L   GF+ GV D+    +   E+                E L      + D     
Sbjct: 701  CARTLGNRGFSIGVGDVFPTMELRAEK----------------EVLVANANRQCD----- 739

Query: 858  SEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL-MTTSG 916
             E+ +  + G     A  D++ T + +     S + +L     ++   +N   L M  SG
Sbjct: 740  -ELIETFKAGKLQKAAGCDLEQTLENSISGLLSKVRQLAGAKCVETLSRNNAPLVMAKSG 798

Query: 917  AKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRP 976
            +KGS++N  Q+ + +GQQ + G+RVP     ++LP FH     P + GF+ + F +GL P
Sbjct: 799  SKGSEINVAQMVALVGQQIIGGQRVPDGFQDRSLPHFHKNSRQPPSKGFVANSFYSGLLP 858

Query: 977  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE 1036
             E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR + G IVQF +G 
Sbjct: 859  TEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSGGGIVQFQFGA 918

Query: 1037 DGVD 1040
            D +D
Sbjct: 919  DKLD 922



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 55/77 (71%), Gaps = 1/77 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            FLKL + K   +  +PG  VG + +QS+GEP TQMTL TFH AG   M++T G+PR++EI
Sbjct: 1066 FLKLCQEKHERAKTEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEI 1125

Query: 1187 LTIASKDIKTPVITCPL 1203
            +  ASK I TPVITCPL
Sbjct: 1126 IN-ASKLISTPVITCPL 1141



 Score = 42.4 bits (98), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TC Q+   C GHFGH+ L +P ++      +  +L+ IC  C     +  E  K + +
Sbjct: 77  CQTCAQQLQNCNGHFGHVRLPLPAFHIGYLRFIQMILQNICKDCARVLLTEPERRKFLLE 136

Query: 61  L 61
           L
Sbjct: 137 L 137


>gi|418204404|gb|AFX61756.1| RNA polymerase I largest subunit, partial [Ascosphaera variegata]
          Length = 1683

 Score =  325 bits (833), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 229/709 (32%), Positives = 341/709 (48%), Gaps = 138/709 (19%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  RQ LMGKRV+++ R+VI+ DP L+++E+G+P   A  LTY E VTP+N+ KL
Sbjct: 323  LKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIARTLTYTEVVTPYNISKL 382

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
               + NG  IHPGA + +                  G KL+        PG+     F+ 
Sbjct: 383  VQMVNNGPNIHPGAKYIIR---------------PTGEKLNLVGNKTPNPGRLLQYGFK- 426

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RH+ DGDV+L NRQP+LHK S+MAH VRV+    T R++ +  + YNADFDGDEMN
Sbjct: 427  --VERHILDGDVILFNRQPSLHKESMMAHRVRVMP-YSTFRLNLSVTTPYNADFDGDEMN 483

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E SRAE   +       V P    PL  ++QD +     + ++DTFL ++    
Sbjct: 484  LHVPQSEESRAELKELALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKEHVMN 543

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            ++         +  + G              V+P  PAI KP P WTGKQ+I+ VL    
Sbjct: 544  IMM-------WVPDWDG--------------VIP-QPAIIKPRPRWTGKQIISMVLP--- 578

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                                                   S  N +  DK        +G 
Sbjct: 579  ---------------------------------------SGLNLLRLDK--------DGA 591

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAG 788
            P  E+ +  N S           I+  +L+ G   K        G++HT+   YG +   
Sbjct: 592  PLAERFSPINDS--------GCFIHGGELMFGQFSKKTVGATGGGVIHTIFNEYGPDVCM 643

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLI-------LKDKERERKNHLHGSEEIGKRVHLE 841
            +  +   R+   +L  +GF+ G+ D +        +++  RERK+ +   E+I      +
Sbjct: 644  SFFNGTQRVVNYWLLHNGFSIGIGDTIPDAKTVAKIEEAVRERKDEV---EDITDDATRD 700

Query: 842  ALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLL 901
            AL+   G  I     +S++ +A+    D A       +T +  K  +  V          
Sbjct: 701  ALDPLPGMNIRE-TFESKVSRALNNARDDA-----GNVTEKSLKDCNHGV---------- 744

Query: 902  KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 961
                      M  SG+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F   D++P 
Sbjct: 745  ---------QMARSGSKGSTINISQMMAIVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPE 795

Query: 962  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1021
            + GF+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD +
Sbjct: 796  SRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGT 855

Query: 1022 VRDADGSIVQFCYGEDGVDVHQTSFISKFDALA-ARERGRGRGRNKFCD 1069
            VR++ G +VQF YGEDG+D        + D +  + E+ R R R  F D
Sbjct: 856  VRNSLGDVVQFIYGEDGLDGAHIEN-QRVDVITCSDEKFRQRFRVDFMD 903



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 67/90 (74%), Gaps = 4/90 (4%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            N++A Q  L  ++++F  ++A PGE VG+LA+QS+GEP+TQMTLNTFH AG    NVTLG
Sbjct: 1038 NKLALQHVLGAIENRFARAIASPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLG 1097

Query: 1180 IPRLQEILTIASKDIKTPVIT---CPLLVG 1206
            +PRL+EIL +A K+IKTP +T    P L G
Sbjct: 1098 VPRLKEILNVA-KNIKTPSMTVYQVPELAG 1126



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 27/49 (55%)

Query: 1  CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKA 49
          C TC Q    CPGHFGHI+L  PV++      +  LL+ +C  C   KA
Sbjct: 51 CATCEQGIMDCPGHFGHIELASPVFHIGFLTKIKKLLETVCINCGKIKA 99


>gi|409051067|gb|EKM60543.1| hypothetical protein PHACADRAFT_246551 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1753

 Score =  325 bits (833), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 218/675 (32%), Positives = 330/675 (48%), Gaps = 135/675 (20%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VI+ DP L ++E+G+P   A+ LT+PERVTP+N+  L
Sbjct: 341  LKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTFPERVTPYNIHWL 400

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE- 489
            +D + NG   +PGA + +                  G ++D      ++  K +D   + 
Sbjct: 401  QDLVRNGPTTYPGARYVVK---------------DTGERID------LRYNKRADAFLQF 439

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G +V RHL+DGD VL NRQP+LHK S+M+H VR++    T R++ +    YNADFDGDEM
Sbjct: 440  GWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMP-YSTFRLNLSVTPPYNADFDGDEM 498

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ E +RAE   I     Q + P    P+  ++QD +      T +DTFL+  +  
Sbjct: 499  NMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWTQV- 557

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
                                 Q +L+   + +     P + KP+PLWTGKQ+++     I
Sbjct: 558  ---------------------QNILLWVPDWDGTVPTPVVIKPKPLWTGKQLLSMC---I 593

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
             RG                     N D +S     D G L                    
Sbjct: 594  PRG----------------INIHRNPDPKSSNPVFDDGVL-------------------- 617

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTA 787
                                    I   +L+ G++DK     +  GLVH V    G    
Sbjct: 618  ------------------------IENGELIFGIVDKKTVGASQGGLVHVVFREKGPEMT 653

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED 847
              L + L ++   +L  +GF+ G+ D +       +RK   H +E+I  R    A  ++D
Sbjct: 654  RQLFTGLQQVVNYWLFHNGFSIGIGDTIA------DRKTMAHITEQIAIRKQTVAQIIDD 707

Query: 848  GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTG 905
             A     +LK +    +R         F+ K+  +LN  +  +     + L E       
Sbjct: 708  AAH---DRLKPQPGMTIRES-------FESKVERELNLARDQNGQYAQKHLKE------- 750

Query: 906  KNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGF 965
             N +  M  +G+KGS +N  Q+S  +GQQ +EG+R+P     +TLP F   D++P A GF
Sbjct: 751  DNNVKQMVVAGSKGSFINISQMSVCVGQQIVEGRRIPFGFRHRTLPHFTKDDFSPEARGF 810

Query: 966  IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDA 1025
            + + +L GL PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD +VR++
Sbjct: 811  VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVHYDGTVRNS 870

Query: 1026 DGSIVQFCYGEDGVD 1040
             G ++QF YGEDG+D
Sbjct: 871  LGDLIQFVYGEDGMD 885



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 65/92 (70%), Gaps = 1/92 (1%)

Query: 1112 KFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGR 1171
            +  +++  N+ A +  L  ++ KF  SLA PGE  G LA+QS+GEP+TQMTLNTFH AG 
Sbjct: 1043 RVLERYHLNKEALEWVLGEIESKFNQSLAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGV 1102

Query: 1172 GEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
               NVTLG+PRL+EI+ +A+ +IKTP ++  L
Sbjct: 1103 SSKNVTLGVPRLKEIINVAT-NIKTPSLSVYL 1133



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKA 49
           C+TCG+    CPGHFGHI+L  PV++P     +  +L+ IC  C   KA
Sbjct: 69  CQTCGEGMSECPGHFGHIELARPVFHPGFVVKVKKILECICVNCGRLKA 117


>gi|3172134|gb|AAC18416.1| RNA polymerase II largest subunit [Bonnemaisonia hamifera]
          Length = 1732

 Score =  325 bits (833), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 233/728 (32%), Positives = 353/728 (48%), Gaps = 129/728 (17%)

Query: 317  LQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEG 376
            L+A   +A+A   Q D  +  VA +MN    +  +       G R + S I Q  + KEG
Sbjct: 186  LEATGAVAHAIREQIDLVQYHVATYMN--NELPGIMPATVRGGSRAIKS-IGQRFKGKEG 242

Query: 377  LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
              R  LMGKRV+++ R+VI+PDP L ++E+G+P   A  LTYPE VT +N+ +++  + N
Sbjct: 243  RVRGNLMGKRVDFSARTVITPDPNLRLHEVGVPFSIARNLTYPEIVTSYNIDEMQKLVEN 302

Query: 437  GAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYR 495
            G + +PGA  Y+++          K+ ++  R               S+ + E G  V R
Sbjct: 303  GPDEYPGA-KYIEREDGF------KVNLAYVR-------------NRSELQLELGYKVIR 342

Query: 496  HLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQ 555
            H++DGD VL NRQP+LHK SIM H +RVL    T R++ +  S YNADFDGDEMN+H PQ
Sbjct: 343  HIRDGDYVLFNRQPSLHKMSIMGHRIRVLP-YSTFRLNLSVTSPYNADFDGDEMNLHVPQ 401

Query: 556  DEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSS 615
               +RAE   ++   +  V P    P+  ++QD ++   L T++DTFL RD    LL   
Sbjct: 402  THQTRAEVQELMLVPHCIVSPQGNKPVMGIVQDTLLGCMLFTQRDTFLERDLMMNLLMH- 460

Query: 616  GVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPP 675
                  +G + G              V+P  PAI+KP PLWTGKQV + +L       PP
Sbjct: 461  ------VGDWDG--------------VIP-KPAIYKPRPLWTGKQVFSLIL-------PP 492

Query: 676  FVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEK 735
              +             RFN     D K                         +  PG   
Sbjct: 493  VNI------------IRFNITHPDDEK------------------------TDISPG--- 513

Query: 736  EAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSA 793
                         + K+ I +  L+ G++DK        GL+H   + +G     TL+S 
Sbjct: 514  -------------DTKVYISRGQLICGIVDKRTVGSSANGLIHITWKEFGPKITDTLISQ 560

Query: 794  LSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            +  L   ++     + G+ D +      R   + + G++E                E+  
Sbjct: 561  IQVLVNHYILQRRQSIGIGDTIADDATMRNVIDTIQGAKE----------------EVKL 604

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
            +  K++ ++ +   G   +  F+ ++   LN     S  +   S  LLK    N I  M 
Sbjct: 605  LVRKAQEKELVLLPGKGMMESFETEVNKVLNGARDKSGASAQRS--LLK---SNNIKRMV 659

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
            ++G+KGS +N  QI + +GQQ +EGKR+      +TLP F   D  P + GF+ + +L G
Sbjct: 660  SAGSKGSFINISQICACVGQQNVEGKRIAYGFHRRTLPHFVLDDLGPESRGFVENSYLRG 719

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            L P E++FH M GREGL+DTAVKT+ +GY+QR LIK +E + + YD +VR++   IV+F 
Sbjct: 720  LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMEDIMVRYDGTVRNSCNHIVEFL 779

Query: 1034 YGEDGVDV 1041
            YGED +D 
Sbjct: 780  YGEDSMDA 787



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
             L  V+++F++    PGE +G +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI
Sbjct: 993  LLGEVENRFMMCRVAPGENIGAIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEI 1052

Query: 1187 LTIASKDIKTPVITCPL 1203
            + + SK+ KTP +T  L
Sbjct: 1053 INV-SKNTKTPSLTVYL 1068



 Score = 46.6 bits (109), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 71/171 (41%), Gaps = 17/171 (9%)

Query: 11  CPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRKLELIIKGDII 70
           CPGHFGH++L  P++N    N+   +L+ +C +C     S   V    +          I
Sbjct: 2   CPGHFGHVELAKPMFNIGFINISLKILRCVCHYCSKLLCSSASVAILHK----------I 51

Query: 71  AAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSLQFAEAKLALL 130
              +  +      ++      + +  C  + P+ + D  R     E T+ + AE K  + 
Sbjct: 52  TKPTDRMRTAMRFTSGAKKLCTAEGGCGHMQPKYSRDGFRIRAIFEDTAEESAERKQTIT 111

Query: 131 Q------FLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRG 175
                  F +I  ++C      + R S+P +  + +  +P   +R +++RG
Sbjct: 112 AEKSYAIFKRISNSEC-EAMGLSWRWSRPEWLILTLLPVPPPQVRPSVMRG 161


>gi|325969566|ref|YP_004245758.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta moutnovskia
            768-28]
 gi|323708769|gb|ADY02256.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta moutnovskia
            768-28]
          Length = 891

 Score =  325 bits (832), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 251/797 (31%), Positives = 385/797 (48%), Gaps = 146/797 (18%)

Query: 266  SDMQQQGFGKKAGHSIF-FLGVVLVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIY 322
            SD+   G+  K     +  L V+ VPP + R PS   ++    E   T  L  +++ N  
Sbjct: 205  SDLVLLGWDPKFARPEWAILTVLPVPPPQVR-PSIQLETGQRSEDDLTHKLVDIVRVNEK 263

Query: 323  LANAYVNQPDNAKVIVARWMNLQQSVNVLFDG--------KNAAGQRDMASGICQLLEKK 374
            L  A +     + V+   W  LQ  V   F+         K+ +G R + + + Q L+ K
Sbjct: 264  LRTA-IESGAPSSVVDQLWDLLQYHVATYFNNELPNLPPVKHRSG-RPLKT-LAQRLKGK 320

Query: 375  EGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSI 434
            EG FR  L GKRV+++ R+VISPDP L++NE+G+P   A  LT P  VT WN+  +R  +
Sbjct: 321  EGRFRGSLSGKRVDFSSRTVISPDPNLSINEVGVPIDIAKTLTVPMMVTEWNLELVRQLV 380

Query: 435  INGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMV 493
            +NG E+ PGA + +         P+       GR++D       +  ++  N+   G +V
Sbjct: 381  LNGPEVWPGANYVIY--------PD-------GRRVDLR---YFRDRRELANKLAPGFVV 422

Query: 494  YRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHF 553
             RHL +GD+VL NRQP+LH+ S+M H+VRVL G +T R+H A C  YNADFDGDEMN+H 
Sbjct: 423  ERHLMNGDIVLFNRQPSLHRMSMMGHIVRVLPG-RTFRLHLAVCPPYNADFDGDEMNLHV 481

Query: 554  PQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLY 613
            PQ+E +RAEA  ++   N  + P  G P+    QD+I    LLT+KD  +N++    LL 
Sbjct: 482  PQNEEARAEARTLMIVQNHIITPRYGGPIIGARQDYITGGYLLTRKDNLINKELLTYLLA 541

Query: 614  SSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGR 673
            ++        ++ G+  +               PAI  P+ LWTGKQVI+ +L       
Sbjct: 542  AA--------NYDGEIDE---------------PAIMHPKELWTGKQVISMLLPKDLNWV 578

Query: 674  PPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGE 733
             P  ++   K P + +   +                                +V G    
Sbjct: 579  QPTAIKESCKEPYNCYTDEYII------------------------------IVNGYMAT 608

Query: 734  EKEAEKNKSKEKELSEEKLLI--YKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLL 791
                +K+   E+  S   +++  Y ND  R  +D                       ++L
Sbjct: 609  GVLDKKSIGAEQVDSLWHVVVKRYGNDYARRWVD-----------------------SIL 645

Query: 792  SALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSE----EIGKRVHLEALELED 847
             AL R    FL + GF+ G+D L + ++   E +     SE    +  ++     LE E 
Sbjct: 646  RALLR----FLDLRGFSMGIDSLEMPRESYMELEKLYEESERKVLDYIQKYKEGRLEAEP 701

Query: 848  GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKN 907
            G  ID   L+++I   +    +AA                        ++E  +   G+ 
Sbjct: 702  GLTIDE-TLENDITIELSRVREAAAR----------------------VAERYINKDGEA 738

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
            +I  M  +GA+GS VN  Q+ + LGQQ + G+R  R  +G+T   F P D  P A GF+ 
Sbjct: 739  YI--MAKTGARGSIVNITQMVAMLGQQTIRGERFKRGFAGRTTAHFEPGDLGPIAKGFVR 796

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
            + F TGL P E++FH   GR+GLVDTAV+T++SGY+QR LI  L+ + ++YD +VR+A G
Sbjct: 797  NNFKTGLTPLEFFFHAAGGRDGLVDTAVRTAQSGYMQRRLINALQDIYVTYDGTVRNASG 856

Query: 1028 SIVQFCYGEDGVDVHQT 1044
            SI+Q  Y ED +DV ++
Sbjct: 857  SIIQTKYAEDSIDVSKS 873



 Score = 50.1 bits (118), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG     CPGHFG I+L  PV +      ++ LL+  C  C     +  E+EK  ++
Sbjct: 72  CETCGNPPDKCPGHFGRIELARPVIHVEYAKYVHDLLRTTCRECGRILLTDEEIEKYSKR 131

Query: 61  LE 62
           LE
Sbjct: 132 LE 133


>gi|340056888|emb|CCC51227.1| DNA-directed RNA polymerase iii largest subunit [Trypanosoma vivax
            Y486]
          Length = 1533

 Score =  325 bits (832), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 249/826 (30%), Positives = 373/826 (45%), Gaps = 155/826 (18%)

Query: 235  KDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKF 294
            +D     L P  V+ + + +   EF L          G           +  +LVPP++ 
Sbjct: 220  RDYVHDFLDPVRVRQLFQAIPPEEFALL---------GLAPGVSPLDLLMTTLLVPPVQV 270

Query: 295  R-LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD 353
            R   S G  ++ +   T   + +L +   L +  ++    A      W  LQ     L D
Sbjct: 271  RPRGSSGTATIRDDDLTAQYNDILVSADTLQDGSLD----ATKYTETWEMLQMRAARLLD 326

Query: 354  GKNAAGQRDMASG----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIP 409
                    ++ +       Q L+ K G FR  L GKRV+Y+ RSVISPDP L V+E+ +P
Sbjct: 327  SALPGFPPNVRTSDLKSYAQRLKSKHGRFRCNLSGKRVDYSGRSVISPDPNLDVDELAVP 386

Query: 410  PYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGA-THYLDKLSTMRLPPNKKMRISIGR 468
               A  LTYP+RV   N   +R  + NG  +HPGA T YL +  + +   N++ R  +  
Sbjct: 387  LRVARVLTYPQRVYKCNHELMRRLVRNGPYVHPGAVTVYLAQEGSSKSLKNERDRERLAA 446

Query: 469  KLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK 528
            +L                   G +V RHL +GD+VL NRQP+LH+ S+MAH  RVL   +
Sbjct: 447  RLAV-----------------GDIVERHLMNGDIVLFNRQPSLHRVSMMAHRARVLPF-R 488

Query: 529  TLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQD 588
            T R +   C+ YNADFDGDEMNVHF Q E +RAEA ++++     +   NG+P+ +  QD
Sbjct: 489  TFRFNECCCAPYNADFDGDEMNVHFVQTEEARAEALHLMSTARNIISAKNGEPIIACTQD 548

Query: 589  HIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPA 648
             + +A L+T +D FL+R +  Q +      S  LGS              EQ  LP +PA
Sbjct: 549  FLAAAYLVTARDVFLDRSQLSQFV------SHWLGS-------------GEQFRLP-VPA 588

Query: 649  IWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
            I KP  LWTGKQ+   ++    R  P   V    + P  F+                   
Sbjct: 589  ILKPVELWTGKQLFELII----RPSPEVGVLLSLEAPTKFY------------------- 625

Query: 709  LSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQ 768
                      + G+   V EG                      +    +  + G +DK  
Sbjct: 626  ---------SREGRHDCVAEG---------------------YVSFIDSRYISGRMDKRL 655

Query: 769  F---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL----------- 814
                +  GL   +  L G      ++S +++  + +L  +GF+ G+ D+           
Sbjct: 656  LGGGSKDGLFARLHTLAGGQYTARVMSRIAQFTSRYLTNYGFSLGLGDVAPTTELNELKS 715

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
             +LK +  E+ N L  S + G    L  L +    E    +L +E+ K     G AAV  
Sbjct: 716  AVLK-RSFEKCNQLIESAKSGLMEPLPGLTVRQSLE---TRLNAELSKVRDECGTAAVQT 771

Query: 875  FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
              +     L                           +M  SG+KGS +N  Q+ + +GQQ
Sbjct: 772  LSVDTNIPL---------------------------IMVNSGSKGSALNIAQMMACVGQQ 804

Query: 935  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
             + GKR+      ++LP FH ++ AP A GF+   F +GL P E++FH MAGREGLVDTA
Sbjct: 805  TVNGKRILNAFQDRSLPHFHRFEEAPSARGFVASSFYSGLTPTEFFFHTMAGREGLVDTA 864

Query: 995  VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            VKT+ +GY+ R L+K +E L + YD +VR+  G +VQ  +GEDG+D
Sbjct: 865  VKTAETGYIYRRLMKAMENLSVRYDGTVRNTKGDVVQLRHGEDGLD 910



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 54/77 (70%), Gaps = 1/77 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            FL+    K+V    +P  P G +A+QSVGEPSTQMTL TFH AG   MN+T G+PRL E+
Sbjct: 1130 FLEQCAQKYVRKFCEPSTPCGAIAAQSVGEPSTQMTLRTFHFAGVSSMNITQGVPRLVEV 1189

Query: 1187 LTIASKDIKTPVITCPL 1203
            +  A+++I TPVIT P+
Sbjct: 1190 IN-ANRNIATPVITAPV 1205



 Score = 45.4 bits (106), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG     C GH GHIDL  PV++   F+ +  + + IC  C H      E++   R+
Sbjct: 74  CGTCGLGYVDCVGHPGHIDLGAPVFHLGFFSTVMRICRTICKRCSHVLLDNVEIDYYKRR 133

Query: 61  L 61
           L
Sbjct: 134 L 134


>gi|68300816|gb|AAY89349.1| RNA polymerase II largest subunit [Antirrhinum majus]
          Length = 780

 Score =  324 bits (831), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 227/680 (33%), Positives = 331/680 (48%), Gaps = 128/680 (18%)

Query: 367  ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
            IC  L+ KEG  R  LMGKRV+++ R+VI+PDP + ++E+G+P   AL LTYPE VTP+N
Sbjct: 12   ICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYN 71

Query: 427  VVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN 486
            + +L++ +  G   HP              PP K     I R  D  R  +    K SD 
Sbjct: 72   IERLKELVEYGP--HP--------------PPGKTGARYIIRD-DGQRLDLRYLKKSSDM 114

Query: 487  EFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
              E G  V RHL DGD VL NRQP+LHK SIM H ++++    T R++ +  S YNADFD
Sbjct: 115  HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNADFD 173

Query: 546  GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
            GDEMN+H PQ   +RAE   ++      V P    P+  ++QD ++    +TK+DTF+ +
Sbjct: 174  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEK 233

Query: 606  DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
            D F  +L            F GK              +P  P I KP PLWTGKQV   +
Sbjct: 234  DVFMNILM-------WWEDFDGK--------------VP-APVILKPRPLWTGKQVFNLI 271

Query: 666  LNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKE 725
                              +P+     R++A  Q    + +KG ++               
Sbjct: 272  ------------------IPKQINLLRYSAWHQ----EKEKGFIT--------------- 294

Query: 726  VVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYG 783
                 PG                + ++ I K +L+ G + K         L+H + E  G
Sbjct: 295  -----PG----------------DTQVRIEKGELLTGTLCKKTLGTGTGSLIHVIWEEVG 333

Query: 784  SNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL 843
             + A   L     L   +L  + F+ G+ D  I      E+ N      E  +    E  
Sbjct: 334  PDAARKFLGHTQWLVNYWLLQNAFSIGIGD-TIADAATMEKIN------ETIQNAKNEVK 386

Query: 844  ELEDGAEIDPIKLKSEIEKAMRGG-GDAAVAYFDMKMTSQLNK--HTSSSVINELLSEGL 900
            EL   A+          EK +    G   +  F+ ++   LNK    + S   + LSE  
Sbjct: 387  ELIRAAQ----------EKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSE-- 434

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
                  N +  M T+G+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D+ P
Sbjct: 435  -----HNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGP 489

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
             + GF+ + +L GL PQE++FH M GREGL+DTAVKTS +GY+QR L+K +E + + YD 
Sbjct: 490  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 549

Query: 1021 SVRDADGSIVQFCYGEDGVD 1040
            +VR++ G ++QF YGEDG+D
Sbjct: 550  TVRNSLGDVIQFLYGEDGMD 569



 Score = 48.5 bits (114), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 29/36 (80%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTF 1166
            ++ +F+ SL   GE +G +A+QS+GEP+TQMTLNTF
Sbjct: 745  IESRFLQSLVAAGEMIGCVAAQSIGEPATQMTLNTF 780


>gi|383320561|ref|YP_005381402.1| DNA-directed RNA polymerase, subunit A' [Methanocella conradii HZ254]
 gi|379321931|gb|AFD00884.1| DNA-directed RNA polymerase, subunit A' [Methanocella conradii HZ254]
          Length = 877

 Score =  324 bits (831), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 255/845 (30%), Positives = 392/845 (46%), Gaps = 160/845 (18%)

Query: 219  RHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFG---K 275
            + +K +G +  G K         L+P+DV+D +E + + + E+           FG   K
Sbjct: 156  KFEKPTGYIEDGHK---------LMPTDVRDRLEMIPDEDIEV-----------FGMDPK 195

Query: 276  KAGHSIFFLGVVLVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANI-YLANAYVNQPD 332
             A      L V+ VPP+  R PS   +S    E   T  L  +++ N  +  N     P 
Sbjct: 196  NARPEWMVLTVLPVPPVTVR-PSITLESGQRSEDDLTHKLVDIIRINQRFQENRDAGAPQ 254

Query: 333  NAKVIVARWMNLQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKR 386
               +I   W  LQ  V    D    G   A  R       + Q L+ KEG FR  L GKR
Sbjct: 255  --LIIEDLWELLQYHVTTYIDNAVSGVPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKR 312

Query: 387  VNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATH 446
            VN++ R+VISPDP L++NE+G+P   A  +T P  VTP+N+   R+ +  G+E HPGA +
Sbjct: 313  VNFSARTVISPDPNLSINEVGVPLSIAKEMTVPMTVTPFNIEVAREYVRRGSENHPGA-N 371

Query: 447  YLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVN 506
            Y+ +    RL    K    +   LD                  G  V R L+DGD+VL N
Sbjct: 372  YVKRPDGRRLKVTDKNCAELAEALDV-----------------GWKVDRQLKDGDIVLFN 414

Query: 507  RQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNI 566
            RQP+LH+ SIM H V+V+   KT R++ A C+ YNADFDGDEMN+H PQ+  + AEA  +
Sbjct: 415  RQPSLHRMSIMGHFVKVMP-HKTFRLNPAVCAPYNADFDGDEMNLHVPQNMEAMAEARIL 473

Query: 567  VNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFT 626
            +      + P  G P+   + DHI    LLTK +   N  E   LL  +GV         
Sbjct: 474  MLVQQNILSPRFGGPIIGGLHDHISGIYLLTKGNQMFNEAEALDLLRKTGVRE------- 526

Query: 627  GKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQ 686
                            LP    +      WTGKQ+ + +                  LP+
Sbjct: 527  ----------------LPEPAKVEGGVQYWTGKQIFSTI------------------LPR 552

Query: 687  DFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKE 746
                                      N  +K K  +  EV                K++E
Sbjct: 553  TL------------------------NLTYKAKICENCEV---------------CKKEE 573

Query: 747  LSEEKLLIYKNDLVR-GVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQ 803
              ++  +  ++ +++ GVID+     +   +V  + + Y  +TA   +  ++RL    + 
Sbjct: 574  CDKDAYVTIRDGVLKTGVIDEKAIGAFSGKIVDRIVKTYDEDTAAKFIDDVTRLAIRAIM 633

Query: 804  MHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
              GF+ G+ D  I ++ + +  + +  SE+  K++    +E  +  E++P+  ++  E  
Sbjct: 634  KFGFSYGISDTDIPREAKVQTTDVILESEKQVKKL----IEAYEAGELEPLPGRTLKET- 688

Query: 864  MRGGGDAAVAYFDMKMTSQLNK--HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSK 921
                        ++++  +L K    + S+  + L+       G N   +M  SGA+GS 
Sbjct: 689  -----------LELRIMQELAKARDAAGSIAGKHLAS-----EGDNSAVIMARSGARGSF 732

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            +N  Q++  +GQQ + G+R+ R  S +TLP F P D    A GF+   +  GL P E++F
Sbjct: 733  LNLTQMTGCVGQQSVRGERIMRGYSDRTLPHFLPGDLGADARGFVESSYKKGLNPTEFFF 792

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV 1041
            H M GREGLVDTAV+TS+SGYLQR L+  L+ L++ YD +VR+  G IVQF YGEDGVD 
Sbjct: 793  HAMGGREGLVDTAVRTSQSGYLQRRLVNALQDLEVKYDGTVRETRGVIVQFEYGEDGVDP 852

Query: 1042 HQTSF 1046
             ++ +
Sbjct: 853  MKSDY 857



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 32/62 (51%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCG R   CPGHFGHI+L  PV +     LL  +L   C  C       +   + +R+
Sbjct: 59  CRTCGGRPGECPGHFGHIELAAPVIHVGFARLLRKILMTTCRRCGRLMLDEKAKAEYLRQ 118

Query: 61  LE 62
           ++
Sbjct: 119 IK 120


>gi|449524332|ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score =  324 bits (831), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 234/712 (32%), Positives = 340/712 (47%), Gaps = 138/712 (19%)

Query: 344  LQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
            LQ  +   FD    G   A QR       IC  L+ KEG  R  LMGKRV+++ R+VI+P
Sbjct: 306  LQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 365

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DP + ++E+G+P   AL LTYPE VTP+N+ +L++ +  G   HP              P
Sbjct: 366  DPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGP--HP--------------P 409

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSI 516
            P K     I R  D  R  +    K SD+  E G  V RHL DGD VL NRQP+LHK SI
Sbjct: 410  PGKTGAKYIIRD-DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSI 468

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            M H ++++    T R++ +  S YNADFDGDEMN+H PQ   +RAE   ++      V P
Sbjct: 469  MGHRIKIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 527

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
             +  P+  ++QD ++    +TK+DTF+ +D F   L            F GK        
Sbjct: 528  QSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTLM-------WWEDFDGK-------- 572

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
                  +P  PAI KP+PLWTGKQ    V N I              +P+          
Sbjct: 573  ------IPA-PAILKPQPLWTGKQ----VFNLI--------------IPKQI-------- 599

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
                        L++T+  H +      E     PG+                  + I K
Sbjct: 600  -----------NLTRTSAWHSES-----ETGHITPGDTF----------------VRIEK 627

Query: 757  NDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             +L+ G + K         L+H + E  G + A   L     L   +L  + F+ G+ D 
Sbjct: 628  GELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDT 687

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIK--LKSEIEKAMRG-GGDAA 871
                               I     +E +     A  + +K  +K   E+++    G   
Sbjct: 688  -------------------IADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTM 728

Query: 872  VAYFDMKMTSQLNK--HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISS 929
            +  F+ K+   LNK    + S   + LSE        N +  M T+G+KGS +N  Q+++
Sbjct: 729  MDSFENKVNQVLNKARDDAGSSAQKSLSES-------NNLKAMVTAGSKGSFINISQMTA 781

Query: 930  HLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREG 989
             +GQQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL PQE++FH M GREG
Sbjct: 782  CVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 841

Query: 990  LVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV 1041
            L+DTAVKTS +GY+QR L+K +E + + YD +VR++ G ++QF YGEDG+D 
Sbjct: 842  LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 893



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 65/94 (69%), Gaps = 1/94 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            +++  D++     A +  +  ++ +F+ SL  PGE +G +A+QS+GEP+TQMTLNTFH A
Sbjct: 1047 SKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1106

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            G    NVTLG+PRL+EI+ +A K IKTP ++  L
Sbjct: 1107 GVSAKNVTLGVPRLREIINVA-KRIKTPSLSVYL 1139



 Score = 49.7 bits (117), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGH++L  P+++      + T+++ +CF C
Sbjct: 66  CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNC 109


>gi|449456849|ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score =  324 bits (830), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 234/712 (32%), Positives = 340/712 (47%), Gaps = 138/712 (19%)

Query: 344  LQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
            LQ  +   FD    G   A QR       IC  L+ KEG  R  LMGKRV+++ R+VI+P
Sbjct: 306  LQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 365

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            DP + ++E+G+P   AL LTYPE VTP+N+ +L++ +  G   HP              P
Sbjct: 366  DPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGP--HP--------------P 409

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSI 516
            P K     I R  D  R  +    K SD+  E G  V RHL DGD VL NRQP+LHK SI
Sbjct: 410  PGKTGAKYIIRD-DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSI 468

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            M H ++++    T R++ +  S YNADFDGDEMN+H PQ   +RAE   ++      V P
Sbjct: 469  MGHRIKIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 527

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
             +  P+  ++QD ++    +TK+DTF+ +D F   L            F GK        
Sbjct: 528  QSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTLM-------WWEDFDGK-------- 572

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
                  +P  PAI KP+PLWTGKQ    V N I              +P+          
Sbjct: 573  ------IPA-PAILKPQPLWTGKQ----VFNLI--------------IPKQI-------- 599

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
                        L++T+  H +      E     PG+                  + I K
Sbjct: 600  -----------NLTRTSAWHSES-----ETGHITPGDTF----------------VRIEK 627

Query: 757  NDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             +L+ G + K         L+H + E  G + A   L     L   +L  + F+ G+ D 
Sbjct: 628  GELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDT 687

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIK--LKSEIEKAMRG-GGDAA 871
                               I     +E +     A  + +K  +K   E+++    G   
Sbjct: 688  -------------------IADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTM 728

Query: 872  VAYFDMKMTSQLNK--HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISS 929
            +  F+ K+   LNK    + S   + LSE        N +  M T+G+KGS +N  Q+++
Sbjct: 729  MDSFENKVNQVLNKARDDAGSSAQKSLSES-------NNLKAMVTAGSKGSFINISQMTA 781

Query: 930  HLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREG 989
             +GQQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL PQE++FH M GREG
Sbjct: 782  CVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 841

Query: 990  LVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV 1041
            L+DTAVKTS +GY+QR L+K +E + + YD +VR++ G ++QF YGEDG+D 
Sbjct: 842  LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 893



 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 65/94 (69%), Gaps = 1/94 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            +++  D++     A +  +  ++ +F+ SL  PGE +G +A+QS+GEP+TQMTLNTFH A
Sbjct: 1047 SKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1106

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            G    NVTLG+PRL+EI+ +A K IKTP ++  L
Sbjct: 1107 GVSAKNVTLGVPRLREIINVA-KRIKTPSLSVYL 1139



 Score = 49.7 bits (117), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGH++L  P+++      + T+++ +CF C
Sbjct: 66  CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNC 109


>gi|188532157|gb|ACD63090.1| RNA polymerase II largest subunit [Pisum sativum]
          Length = 1010

 Score =  324 bits (830), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 230/710 (32%), Positives = 346/710 (48%), Gaps = 128/710 (18%)

Query: 367  ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
            IC  L+ KEG  R  LMGKRV+++ R+VI+PDP + ++++G+P   AL LTYPE VTP+N
Sbjct: 254  ICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWTIALNLTYPETVTPYN 313

Query: 427  VVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN 486
            + +L++ +  G   HP              PP K     I R  D  R  +    K SD+
Sbjct: 314  IERLKELVEYGP--HP--------------PPGKTGAKYIIRD-DGQRLDLRYLKKSSDH 356

Query: 487  EFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
              E G  V RHL DGD VL NRQP+LHK SIM H ++++    T R++ +  S YNADFD
Sbjct: 357  HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNADFD 415

Query: 546  GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
            GDEMN+H PQ   +RAE   ++      V P    P+  ++QD ++    +TK+DTF+ +
Sbjct: 416  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDSLLGCRKITKRDTFIAK 475

Query: 606  DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
            D F  +L            F GK              +P  P I KPEPLWTGKQ    V
Sbjct: 476  DVFMNILM-------WWEDFDGK--------------VPA-PTILKPEPLWTGKQ----V 509

Query: 666  LNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKE 725
             N I              +P+     R++    S   + ++G ++  + M +        
Sbjct: 510  FNLI--------------IPKQINLIRYS----SWHNEAERGPITPGDTMVR-------- 543

Query: 726  VVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYG 783
                                        I K +L+ G + K         L+H V E  G
Sbjct: 544  ----------------------------IEKGELLTGTLCKKTLGTGTGSLIHVVWEEVG 575

Query: 784  SNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL 843
             + A   L     L   +L  + F+ G+ D +            +  +++  K++  EA 
Sbjct: 576  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISQAKDKVKQLIREAQ 635

Query: 844  ELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNK--HTSSSVINELLSEGLL 901
            E          KL++E  + M       +  F+ ++   LNK    + +   + LSE   
Sbjct: 636  EK---------KLEAEPGRTM-------MDSFENRVNQTLNKARDDAGNSAQKSLSES-- 677

Query: 902  KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 961
                 N +  M T+G+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D+ P 
Sbjct: 678  -----NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPE 732

Query: 962  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1021
            + GF+ + +L GL PQE++FH M GREGL+DTAVKTS +GY+QR L+K +E + + YD +
Sbjct: 733  SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGT 792

Query: 1022 VRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRG-RNKFCDK 1070
            VR++ G ++QF YGEDG+D        K D+L  ++    R  R +F D+
Sbjct: 793  VRNSLGDVIQFLYGEDGMDAVWIE-TQKLDSLKMKKTDFDRAFRYEFDDE 841


>gi|397135977|gb|AFO11483.1| RNA polymerase I, partial [Schizosaccharomyces pombe]
          Length = 868

 Score =  324 bits (830), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 221/685 (32%), Positives = 339/685 (49%), Gaps = 129/685 (18%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VI+ DP L+++E+G+P   A  LTYPE VTP+N+ +L
Sbjct: 142  LKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQL 201

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
            ++ + NG + HPGA + +                  G ++D       +   D    + G
Sbjct: 202  QELVRNGPDEHPGAKYIIR---------------DTGERIDLRYH---KRAGDIPLRY-G 242

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RH++DGDVV+ NRQP+LHK S+M H +RV+    T R++ +  S YNADFDGDEMN
Sbjct: 243  WRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMP-YSTFRLNLSVTSPYNADFDGDEMN 301

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E +RAE   I     Q V P +  P+  ++QD +      + +D FL R+    
Sbjct: 302  MHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMN 361

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            ++         +  + G              +LP  P I KP+ LWTGKQ+++       
Sbjct: 362  IML-------WVPDWDG--------------ILPP-PVILKPKVLWTGKQILS------- 392

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                  ++ +G  L +D        DKQS     D G                       
Sbjct: 393  -----LIIPKGINLIRD-------DDKQSLSNPTDSG----------------------- 417

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAG 788
                                 +LI   +++ GV+DK     +  GLVHT+ +  G     
Sbjct: 418  ---------------------MLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEICK 456

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
               + + R+   +L  +GF+ G+ D +   D  +E    +       K    +  E    
Sbjct: 457  GFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMKEVTRTV-------KEARRQVAECIQD 509

Query: 849  AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNW 908
            A+ +  +LK E    +R   +A V+    ++ +Q   +   S      +E  LK +  N 
Sbjct: 510  AQHN--RLKPEPGMTLRESFEAKVS----RILNQARDNAGRS------AEHSLKDS--NN 555

Query: 909  ISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIID 968
            +  M  +G+KGS +N  Q+S+ +GQQ +EGKR+P     +TLP F   D +P + GFI +
Sbjct: 556  VKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIEN 615

Query: 969  RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGS 1028
             +L GL PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K +E + + YD +VR+A G 
Sbjct: 616  SYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGD 675

Query: 1029 IVQFCYGEDGVDVHQTSFISKFDAL 1053
            I+QF YGEDG+D     +   FD+L
Sbjct: 676  IIQFAYGEDGLDATLVEY-QVFDSL 699


>gi|294654840|ref|XP_002770038.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
 gi|199429189|emb|CAR65414.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
          Length = 1749

 Score =  324 bits (830), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 236/768 (30%), Positives = 368/768 (47%), Gaps = 154/768 (20%)

Query: 292  IKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVL 351
            I F   ++G D +     T  L+ VL+ANI +    ++   + + +++ +  L Q     
Sbjct: 255  IAFNDTARGEDDL-----TFKLADVLKANINVQRLEMD--GSPQHVISEFEALLQFHVAT 307

Query: 352  FDGKNAAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
            +   + AGQ        R + S I   L+ KEG  R  LMGKRV+++ R+VIS DP L +
Sbjct: 308  YMDNDIAGQPQALQKTGRPIKS-IRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDL 366

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL-DKLSTMRLPPNKKM 462
            +++G+P   A  L+YPE VTP+N+ +L + + NG   HPGA + + D    + L  NK+ 
Sbjct: 367  DQVGVPISIARTLSYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKR- 425

Query: 463  RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
                                D   ++ G  V RHL D D VL NRQP+LHK S+MAH V+
Sbjct: 426  ------------------AGDIALQY-GWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVK 466

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            V+    T R++ +  S YNADFDGDEMN+H PQ + +RAE   I     Q V P +  P+
Sbjct: 467  VMP-YSTFRLNLSVTSPYNADFDGDEMNLHVPQSQETRAELSQICAVPLQIVSPQSNKPV 525

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
              ++QD +     +T +D F+  D+   +LY        + ++ G              V
Sbjct: 526  MGIVQDTLCGVRKMTLRDNFIEYDQVMNMLY-------WIPNWDG--------------V 564

Query: 643  LPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRK 702
            +P  PAI  P+PLWTGKQ+++                    +P+     RF+ D ++   
Sbjct: 565  IP-PPAIVSPKPLWTGKQLLSMA------------------IPKGIHLQRFD-DGKNLLS 604

Query: 703  KNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRG 762
              D G L                VV+G                            +++ G
Sbjct: 605  PKDNGML----------------VVDG----------------------------EIMFG 620

Query: 763  VIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDK 820
            V+DK        GL+HTV    GS     L S++ ++   +L  +GF+ G+ D +     
Sbjct: 621  VVDKKTVGATGGGLIHTVMREKGSQVCAQLFSSIQKVVNFWLLHNGFSIGIGDTIADSST 680

Query: 821  ERERKNHLHGSEEIGKRVHLEA----LELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFD 876
             R+    +  +++  + + L+A    LE E G  +     +  + + +    D A    +
Sbjct: 681  MRDVTTTIQDAKDKVQEIILDAQSNKLEPEPGMTLRE-SFEHNVSRVLNQARDTAGRSAE 739

Query: 877  MKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
            M +    N                        +  M  SG+KGS +N  Q+S+ +GQQ +
Sbjct: 740  MNLKDLNN------------------------VKQMVVSGSKGSFINISQMSACVGQQIV 775

Query: 937  EGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVK 996
            EGKR+P   + ++LP F   D++P + GF+ + +L GL PQE++FH MAGREGL+DTAVK
Sbjct: 776  EGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVK 835

Query: 997  TSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT 1044
            T+ +GY+QR L+K LE + + YD S R++ G I+QF YGEDG+D  Q 
Sbjct: 836  TAETGYIQRRLVKALEDIMVHYDGSTRNSLGDIIQFVYGEDGIDGTQV 883



 Score = 90.5 bits (223), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 57/73 (78%), Gaps = 1/73 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F  S+  PGE VG++A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EIL +A
Sbjct: 1055 IETQFQKSIVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVA 1114

Query: 1191 SKDIKTPVITCPL 1203
             K+IKTP +T  L
Sbjct: 1115 -KNIKTPALTVYL 1126



 Score = 47.8 bits (112), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TCG+    CPGHFGHI+L  PV++      +  + + +C  C
Sbjct: 68  CQTCGEDMAECPGHFGHIELTKPVFHIGFIAKIKKVCECVCMHC 111


>gi|67517057|ref|XP_658413.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
 gi|40746483|gb|EAA65639.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
 gi|259488909|tpe|CBF88741.1| TPA: DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
            [Source:UniProtKB/TrEMBL;Acc:Q873Q6] [Aspergillus
            nidulans FGSC A4]
          Length = 1745

 Score =  324 bits (830), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 218/675 (32%), Positives = 331/675 (49%), Gaps = 128/675 (18%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  RQ LMGKRV+++ R+VI+ DP L+++E+G+P   A  LTYPE VTP+N+ KL
Sbjct: 343  LKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIEKL 402

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
            +  ++NG   HPGA  Y+ + +  R+      R   G++L                   G
Sbjct: 403  QQLVMNGPNEHPGA-RYIVRDNGERIDLRHAKRAG-GQQL-----------------LYG 443

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RHL DGDV+L NRQP+LHK S+M H VRV+    T R++ +  S YNADFDGDEMN
Sbjct: 444  WKVERHLMDGDVILFNRQPSLHKESMMGHRVRVMP-YSTFRLNLSVTSPYNADFDGDEMN 502

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E SRAE   +       V P    PL  ++QD +     + ++D FL +++   
Sbjct: 503  LHVPQSEESRAELQQLALVPQNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMN 562

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            ++         +  + G              V+P  PAI+KP P WTGKQ+I+ V     
Sbjct: 563  IMM-------WVPDWDG--------------VIP-PPAIFKPRPRWTGKQMISMVFP--- 597

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                                                   S  N M  D  G         
Sbjct: 598  ---------------------------------------SGLNLMRTDSKG--------- 609

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK--AQFADYGLVHTVQELYGSNTAG 788
                  A  +  K   L +  +LI++  L+ G+++K     +  G++H +   YG++ A 
Sbjct: 610  ------AAPSSEKYSPLQDGNVLIHEGQLMYGMLNKKIVGASGGGVIHIIFNEYGADAAV 663

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
               +    +   +L  +GF+ G+ D +            +   EE  ++  LE  E+   
Sbjct: 664  AFFNGAQAIVNYWLLHNGFSIGIGDTI-------PNDQTIQAIEECVRKRKLEVEEITAT 716

Query: 849  A---EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTG 905
            A   +++P+             G      F+ K++  LN     +      +E  LK   
Sbjct: 717  ATQNKLEPLP------------GMNVRETFESKVSVALNTARDEA---GTATEKSLK--D 759

Query: 906  KNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGF 965
             N    M+ SG+KGS +N  Q+++ +GQQ +EGKR+      +TLP F   D++P + GF
Sbjct: 760  LNNAVQMSRSGSKGSIINISQMTAVVGQQMVEGKRIAFGFKYRTLPHFTKDDYSPESRGF 819

Query: 966  IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDA 1025
            + + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD +VR++
Sbjct: 820  VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNS 879

Query: 1026 DGSIVQFCYGEDGVD 1040
             G I+QF YGEDG+D
Sbjct: 880  LGDIIQFIYGEDGLD 894



 Score = 96.3 bits (238), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 66/91 (72%), Gaps = 1/91 (1%)

Query: 1111 EKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
            ++   ++  N++A Q  L  ++ +F  + A PGE VG+LA+QS+GEP+TQMTLNTFH AG
Sbjct: 1049 KRLVTQYSMNKLAFQHVLGAIESRFAKAAAAPGEMVGVLAAQSIGEPATQMTLNTFHFAG 1108

Query: 1171 RGEMNVTLGIPRLQEILTIASKDIKTPVITC 1201
                NVTLG+PRL+EIL +A+ +IKTP +T 
Sbjct: 1109 VSSKNVTLGVPRLKEILNVAT-NIKTPSMTV 1138



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 2/98 (2%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVE--KCV 58
           C+TC + Q  CPGHFGHI+L  PV++      +  LL+ +C  C   KA+  + +    +
Sbjct: 69  CETCEEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKANTSDPKFLDAL 128

Query: 59  RKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSS 96
           R  +   + D I   S D+ +      PED +   +SS
Sbjct: 129 RIRDPKRRFDHIWRLSKDILICEADPPPEDDEYGKESS 166


>gi|397135902|gb|AFO11446.1| RNA polymerase I, partial [Millerozyma farinosa]
          Length = 872

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 250/791 (31%), Positives = 380/791 (48%), Gaps = 153/791 (19%)

Query: 272  GFGKKAGHSIFFLGVVL-VPP------IKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA 324
            GF +      + L  VL VPP      I F   ++G D +     T  L+ +L+ANI + 
Sbjct: 36   GFNEDYARPEWMLITVLAVPPPPVRPSIAFNDTARGEDDL-----TFKLADILKANINVQ 90

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQ--------RDMASGICQLLEKKEG 376
               ++   + + +++ +  L Q     +   + AGQ        R + S I   L+ KEG
Sbjct: 91   RLEMD--GSPQHVISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKS-IRARLKGKEG 147

Query: 377  LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
              R  LMGKRV+++ R+VIS DP L ++++G+P   A  L+YPE VTP+N+ +L + + N
Sbjct: 148  RLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLSYPEIVTPYNIHRLTEYVRN 207

Query: 437  GAEIHPGATHYL-DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYR 495
            G   HPGA + + D    + L  NK+                     D   ++ G  V R
Sbjct: 208  GPNEHPGAKYVIRDTGDRIDLRYNKR-------------------AGDIALQY-GWKVER 247

Query: 496  HLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQ 555
            HL D D VL NRQP+LHK S+M+H V+V+    T R++ +  S YNADFDGDEMN+H PQ
Sbjct: 248  HLMDNDPVLFNRQPSLHKMSMMSHRVKVMP-YSTFRLNLSVTSPYNADFDGDEMNLHVPQ 306

Query: 556  DEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSS 615
               +RAE   I     Q V P +  P+  ++QD +     LT +DTF+  D+   +LY  
Sbjct: 307  SPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKLTLRDTFIEYDQVMNMLYWI 366

Query: 616  GVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPP 675
             V                        V+P  PAI KP+PLWTGKQ+++            
Sbjct: 367  PVWDG---------------------VIPP-PAIVKPKPLWTGKQLLSMA---------- 394

Query: 676  FVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEK 735
                    +P+     RF           D GK    N +    SG              
Sbjct: 395  --------IPKGIHLQRF-----------DDGK----NLLSPKDSG-------------- 417

Query: 736  EAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSA 793
                            +LI   +++ GV+DK      G  L+HTV    G      L  +
Sbjct: 418  ----------------MLIVDGEIMFGVVDKKTVGSTGGGLIHTVMREKGPQVCAQLFGS 461

Query: 794  LSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            + ++   +L  +GF+ G+ D +         KN     E+  ++V     E+ + A+ + 
Sbjct: 462  IQKVVNYWLLHNGFSIGIGDTIA---DASTMKNVTTTIEDAKRKVQ----EIINDAQQN- 513

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
             KL  E    +R         F+  ++  LN+   ++  +   +E  LK    N +  M 
Sbjct: 514  -KLDPEPGMTLRES-------FEHNVSRVLNQARDTAGRS---AEMNLKDL--NNVKQMV 560

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SG+KGS +N  Q+S+ +GQQ +EGKR+P   + +TLP F   D++P + GF+ + +L G
Sbjct: 561  VSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRG 620

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            L PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD + R++ G I+QF 
Sbjct: 621  LTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFI 680

Query: 1034 YGEDGVDVHQT 1044
            YGEDG+D  Q 
Sbjct: 681  YGEDGIDGTQV 691


>gi|297603848|ref|NP_001054670.2| Os05g0151000 [Oryza sativa Japonica Group]
 gi|222630225|gb|EEE62357.1| hypothetical protein OsJ_17146 [Oryza sativa Japonica Group]
 gi|255676030|dbj|BAF16584.2| Os05g0151000 [Oryza sativa Japonica Group]
          Length = 1834

 Score =  323 bits (829), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 233/727 (32%), Positives = 346/727 (47%), Gaps = 150/727 (20%)

Query: 334  AKVIVARWMNLQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRV 387
            A +I      LQ  +   FD    G+  A QR       IC  L+ KEG  R  LMGKRV
Sbjct: 297  AHIITEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 356

Query: 388  NYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY 447
            +++ R+VI+PDP + ++E+G+P   AL LTYPE VTP+N+ +L++ +  G   HP     
Sbjct: 357  DFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGP--HP----- 409

Query: 448  LDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVN 506
                     PP K     I R+ D  R  +    K SD   E G  V RHL DGD VL N
Sbjct: 410  ---------PPGKTGAKYIIRE-DGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFN 459

Query: 507  RQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNI 566
            RQP+LHK SIM H ++++    T R++ +  S YNADFDGDEMN+H PQ   +RAE   +
Sbjct: 460  RQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLEL 518

Query: 567  VNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFT 626
            +      V P +  P+  ++QD ++    +TK+DT + +D F  +L            F 
Sbjct: 519  MMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILM-------WWEDFD 571

Query: 627  GKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQ 686
            GK              +P  PAI KP P+WTGKQ    V N I              +P+
Sbjct: 572  GK--------------VPA-PAILKPRPIWTGKQ----VFNLI--------------IPK 598

Query: 687  DFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKE 746
                 RF+                                     G   EAE   ++   
Sbjct: 599  QINLIRFS-------------------------------------GWHSEAE---TRFIT 618

Query: 747  LSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
              +  + I K +L+ G + K         L+H + E  G + A   L     L   +L  
Sbjct: 619  PGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 678

Query: 805  HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAM 864
            +GF+ G+ D +                         +A  +E+  E    K K++++K +
Sbjct: 679  NGFSIGIGDTIA------------------------DAATMENINETIS-KAKNDVKKLI 713

Query: 865  RG---------GGDAAVAYFDMKMTSQLNK--HTSSSVINELLSEGLLKPTGKNWISLMT 913
            +           G   +  F+ ++   LNK    + S   + LSE        N +  M 
Sbjct: 714  KQFRDNQLEAEAGRTTMESFENRVNEVLNKARDVAGSSAEKSLSES-------NNLKAMA 766

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
            T+G+KG+ +N  Q+++ +GQQ +EGKR+P   + +TLP F   D+ P + GF+ + +L G
Sbjct: 767  TAGSKGTFINISQMTACVGQQNVEGKRIPFGFTNRTLPHFTKNDYGPESRGFVENSYLRG 826

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            L PQE++FH M GREGL+DTAVKTS +GY+QR L+K +E + + YD +VR++ G ++QF 
Sbjct: 827  LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL 886

Query: 1034 YGEDGVD 1040
            YGEDG+D
Sbjct: 887  YGEDGMD 893



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 57/73 (78%), Gaps = 1/73 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F+ SL  PGE +G +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ +A
Sbjct: 1069 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1128

Query: 1191 SKDIKTPVITCPL 1203
             K+IKTP ++  L
Sbjct: 1129 -KNIKTPSLSVHL 1140



 Score = 47.0 bits (110), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 31/55 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVE 55
           C+TC      CPGHFGH++L  P+++      + ++++ +CF C    A   +++
Sbjct: 67  CETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDIK 121


>gi|54291834|gb|AAV32202.1| putative RNA polymerase II [Oryza sativa Japonica Group]
          Length = 1741

 Score =  323 bits (829), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 233/728 (32%), Positives = 346/728 (47%), Gaps = 150/728 (20%)

Query: 334  AKVIVARWMNLQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRV 387
            A +I      LQ  +   FD    G+  A QR       IC  L+ KEG  R  LMGKRV
Sbjct: 244  AHIITEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 303

Query: 388  NYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY 447
            +++ R+VI+PDP + ++E+G+P   AL LTYPE VTP+N+ +L++ +  G   HP     
Sbjct: 304  DFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGP--HP----- 356

Query: 448  LDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVN 506
                     PP K     I R+ D  R  +    K SD   E G  V RHL DGD VL N
Sbjct: 357  ---------PPGKTGAKYIIRE-DGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFN 406

Query: 507  RQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNI 566
            RQP+LHK SIM H ++++    T R++ +  S YNADFDGDEMN+H PQ   +RAE   +
Sbjct: 407  RQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLEL 465

Query: 567  VNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFT 626
            +      V P +  P+  ++QD ++    +TK+DT + +D F  +L            F 
Sbjct: 466  MMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILM-------WWEDFD 518

Query: 627  GKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQ 686
            GK              +P  PAI KP P+WTGKQ    V N I              +P+
Sbjct: 519  GK--------------VPA-PAILKPRPIWTGKQ----VFNLI--------------IPK 545

Query: 687  DFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKE 746
                 RF+                                     G   EAE   ++   
Sbjct: 546  QINLIRFS-------------------------------------GWHSEAE---TRFIT 565

Query: 747  LSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
              +  + I K +L+ G + K         L+H + E  G + A   L     L   +L  
Sbjct: 566  PGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 625

Query: 805  HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAM 864
            +GF+ G+ D +                         +A  +E+  E    K K++++K +
Sbjct: 626  NGFSIGIGDTIA------------------------DAATMENINETIS-KAKNDVKKLI 660

Query: 865  RG---------GGDAAVAYFDMKMTSQLNK--HTSSSVINELLSEGLLKPTGKNWISLMT 913
            +           G   +  F+ ++   LNK    + S   + LSE        N +  M 
Sbjct: 661  KQFRDNQLEAEAGRTTMESFENRVNEVLNKARDVAGSSAEKSLSES-------NNLKAMA 713

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
            T+G+KG+ +N  Q+++ +GQQ +EGKR+P   + +TLP F   D+ P + GF+ + +L G
Sbjct: 714  TAGSKGTFINISQMTACVGQQNVEGKRIPFGFTNRTLPHFTKNDYGPESRGFVENSYLRG 773

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            L PQE++FH M GREGL+DTAVKTS +GY+QR L+K +E + + YD +VR++ G ++QF 
Sbjct: 774  LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL 833

Query: 1034 YGEDGVDV 1041
            YGEDG+D 
Sbjct: 834  YGEDGMDA 841



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 57/73 (78%), Gaps = 1/73 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F+ SL  PGE +G +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ +A
Sbjct: 1016 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1075

Query: 1191 SKDIKTPVITCPL 1203
             K+IKTP ++  L
Sbjct: 1076 -KNIKTPSLSVHL 1087



 Score = 47.0 bits (110), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 31/55 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVE 55
           C+TC      CPGHFGH++L  P+++      + ++++ +CF C    A   +++
Sbjct: 67  CETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDIK 121


>gi|418204400|gb|AFX61754.1| RNA polymerase I largest subunit, partial [Ascosphaera larvis]
          Length = 1627

 Score =  323 bits (829), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 222/679 (32%), Positives = 329/679 (48%), Gaps = 136/679 (20%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  RQ LMGKRV+++ R+VI+ DP L+++E+G+P   A  LTY E VTP+N+ KL
Sbjct: 323  LKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIARTLTYTEVVTPYNISKL 382

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
               + NG  IHPGA + +                  G KL+        PG+     F+ 
Sbjct: 383  VAMVNNGPNIHPGAKYIIR---------------PTGEKLNLVGNKTPNPGRLLQYGFK- 426

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RH+ DGDV+L NRQP+LHK S+MAH VRV+    T R++ +  + YNADFDGDEMN
Sbjct: 427  --VERHILDGDVILFNRQPSLHKESMMAHRVRVMP-YSTFRLNLSVTTPYNADFDGDEMN 483

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E SRAE   +       V P    PL  ++QD +     + ++DTFL ++    
Sbjct: 484  LHVPQSEESRAELKELALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKEHVMN 543

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            ++         +  + G              V+P  PAI KP P WTGKQ+I+ VL    
Sbjct: 544  IMM-------WVPDWDG--------------VIP-QPAIIKPRPRWTGKQIISMVLP--- 578

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                                                   S  N +  DK        +G 
Sbjct: 579  ---------------------------------------SGLNLLRLDK--------DGA 591

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAG 788
            P  E+ +  N S           I+  +L+ G   K        G++HT+   YG +   
Sbjct: 592  PLAERFSPINDS--------GCFIHGGELMFGQFSKKTVGATGGGVIHTIFNEYGPDVCM 643

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLI-------LKDKERERKNHLHGSEEIGKRVHLE 841
            +  +   R+   +L  +GF+ G+ D +        +++  RERK  +   E+I      +
Sbjct: 644  SFFNGTQRVVNYWLLHNGFSIGIGDTIPDANTVAKIEEAVRERKEEV---EDITDDATRD 700

Query: 842  ALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLL 901
            AL+   G  I     +S++ +A+    D A       +T +  K  +  V          
Sbjct: 701  ALDPLPGMNIRE-TFESKVSRALNNARDDA-----GNVTEKSLKDCNHGV---------- 744

Query: 902  KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 961
                      M  SG+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F   D++P 
Sbjct: 745  ---------QMARSGSKGSTINISQMMAIVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPE 795

Query: 962  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1021
            + GF+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD +
Sbjct: 796  SRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGT 855

Query: 1022 VRDADGSIVQFCYGEDGVD 1040
            VR++ G +VQF YGEDG+D
Sbjct: 856  VRNSLGDVVQFIYGEDGLD 874



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 67/90 (74%), Gaps = 4/90 (4%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            N++A Q  L  ++++F  ++A PGE VG+LA+QS+GEP+TQMTLNTFH AG    NVTLG
Sbjct: 1038 NKLALQHVLGAIENRFARAIASPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLG 1097

Query: 1180 IPRLQEILTIASKDIKTPVIT---CPLLVG 1206
            +PRL+EIL +A K+IKTP +T    P L G
Sbjct: 1098 VPRLKEILNVA-KNIKTPSMTVYQVPELAG 1126



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 27/49 (55%)

Query: 1  CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKA 49
          C TC Q    CPGHFGHI+L  PV++      +  LL+ +C  C   KA
Sbjct: 51 CATCEQGIMDCPGHFGHIELASPVFHIGFLTKIKKLLETVCINCGKIKA 99


>gi|418204398|gb|AFX61753.1| RNA polymerase I largest subunit, partial [Ascosphaera cf. larvis
            64254]
          Length = 1616

 Score =  323 bits (829), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 222/679 (32%), Positives = 329/679 (48%), Gaps = 136/679 (20%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  RQ LMGKRV+++ R+VI+ DP L+++E+G+P   A  LTY E VTP+N+ KL
Sbjct: 323  LKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIARTLTYTEVVTPYNISKL 382

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
               + NG  IHPGA + +                  G KL+        PG+     F+ 
Sbjct: 383  VAMVNNGPNIHPGAKYIIR---------------PTGEKLNLVGNKTPNPGRLLQYGFK- 426

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RH+ DGDV+L NRQP+LHK S+MAH VRV+    T R++ +  + YNADFDGDEMN
Sbjct: 427  --VERHILDGDVILFNRQPSLHKESMMAHRVRVMP-YSTFRLNLSVTTPYNADFDGDEMN 483

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E SRAE   +       V P    PL  ++QD +     + ++DTFL ++    
Sbjct: 484  LHVPQSEESRAELKELALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKEHVMN 543

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            ++         +  + G              V+P  PAI KP P WTGKQ+I+ VL    
Sbjct: 544  IMM-------WVPDWDG--------------VIP-QPAIIKPRPRWTGKQIISMVLP--- 578

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                                                   S  N +  DK        +G 
Sbjct: 579  ---------------------------------------SGLNLLRLDK--------DGA 591

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAG 788
            P  E+ +  N S           I+  +L+ G   K        G++HT+   YG +   
Sbjct: 592  PLAERFSPINDS--------GCFIHGGELMFGQFSKKTVGATGGGVIHTIFNEYGPDVCM 643

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLI-------LKDKERERKNHLHGSEEIGKRVHLE 841
            +  +   R+   +L  +GF+ G+ D +        +++  RERK  +   E+I      +
Sbjct: 644  SFFNGTQRVVNYWLLHNGFSIGIGDTIPDANTVAKIEEAVRERKEEV---EDITDDATRD 700

Query: 842  ALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLL 901
            AL+   G  I     +S++ +A+    D A       +T +  K  +  V          
Sbjct: 701  ALDPLPGMNIRE-TFESKVSRALNNARDDA-----GNVTEKSLKDCNHGV---------- 744

Query: 902  KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 961
                      M  SG+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F   D++P 
Sbjct: 745  ---------QMARSGSKGSTINISQMMAIVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPE 795

Query: 962  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1021
            + GF+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD +
Sbjct: 796  SRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGT 855

Query: 1022 VRDADGSIVQFCYGEDGVD 1040
            VR++ G +VQF YGEDG+D
Sbjct: 856  VRNSLGDVVQFIYGEDGLD 874



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 67/90 (74%), Gaps = 4/90 (4%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            N++A Q  L  ++++F  ++A PGE VG+LA+QS+GEP+TQMTLNTFH AG    NVTLG
Sbjct: 1038 NKLALQHVLGAIENRFARAIASPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLG 1097

Query: 1180 IPRLQEILTIASKDIKTPVIT---CPLLVG 1206
            +PRL+EIL +A K+IKTP +T    P L G
Sbjct: 1098 VPRLKEILNVA-KNIKTPSMTVYQVPELAG 1126



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 27/49 (55%)

Query: 1  CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKA 49
          C TC Q    CPGHFGHI+L  PV++      +  LL+ +C  C   KA
Sbjct: 51 CATCEQGIMDCPGHFGHIELASPVFHIGFLTKIKKLLETVCINCGKIKA 99


>gi|37726869|gb|AAO38801.1| DNA-dependent RNA polymerase II largest subunit [Gregarina
            niphandrodes]
          Length = 1020

 Score =  323 bits (828), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 221/676 (32%), Positives = 333/676 (49%), Gaps = 118/676 (17%)

Query: 367  ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
            I + L+ KEG  R  LMGKRV+++ R+VI+ DP L ++++G+P   A+ LTYPE VT  N
Sbjct: 249  IRERLKGKEGRLRGNLMGKRVDFSARTVITGDPNLQIDQVGVPRSIAMNLTYPELVTSMN 308

Query: 427  VVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN 486
            +  LR ++ NG  + PGA  Y+ +                G + D    A    G  +  
Sbjct: 309  LEMLRKAVSNGPSVWPGA-RYITRTD--------------GTRFDLRHCA----GNPAVL 349

Query: 487  EFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
            + E G  V RH++DGD VL NRQP+LHK SIM H V+VL    T R + +  + YNADFD
Sbjct: 350  QLEPGYKVERHVRDGDYVLFNRQPSLHKMSIMGHRVKVLPWS-TFRCNLSVTAPYNADFD 408

Query: 546  GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
            GDEMN+H  Q + +RAE   +     Q V P    P+  ++QD ++  A +T +DTF++R
Sbjct: 409  GDEMNLHLAQSQETRAEIKQLCLVPKQIVSPQGNKPVMGIVQDSLLGLAKMTSRDTFIDR 468

Query: 606  DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
                 L                      L  R    +LP  P I+KPE LWTGKQ+IT +
Sbjct: 469  PIMMGL---------------------CLWVRDWDGILP-APVIYKPEKLWTGKQLITMI 506

Query: 666  LNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKE 725
            L    RG     + R G +                R K D   LS               
Sbjct: 507  LKAGQRGANHVTLHRDGAI----------------RLKQDNEYLSA-------------- 536

Query: 726  VVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK--AQFADYGLVHTVQELYG 783
                                  ++ +++I  ++ V G+I K  A  +   L+H +    G
Sbjct: 537  ----------------------NDGRIIIQDSEHVAGIICKRTAGTSSGSLIHVLWHQCG 574

Query: 784  SNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL 843
                   LS+  ++   +L   GFT GV D++                 +   RV  EAL
Sbjct: 575  PEKTKDFLSSTQKVVNNWLVSIGFTVGVSDIV--------------ADSKTVSRVK-EAL 619

Query: 844  ELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKP 903
            + +   ++D +   +   K     G + +  F+ ++  +LN+   +S    + +E L   
Sbjct: 620  D-DSYVKVDELIRLARQGKLETQPGKSLLESFENRVNQELNQAREAS--GRIAAENL--- 673

Query: 904  TGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAG 963
            T KN I  M  +G+KGS +N  QI + +GQQ +EGKR+P     ++LP F   D+ P + 
Sbjct: 674  TNKNNIISMVNAGSKGSTINISQIMACVGQQNVEGKRIPFGFQDRSLPHFLRHDYGPDSR 733

Query: 964  GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
            GF+ + +L+GL P E +FH M GREG++DTA KTS +GY+QR L+K +E + ++YD +VR
Sbjct: 734  GFVYNSYLSGLLPHELFFHAMGGREGIIDTACKTSETGYIQRRLVKAMEDVLVTYDRTVR 793

Query: 1024 DADGSIVQFCYGEDGV 1039
            +++G IVQF YGEDG+
Sbjct: 794  NSNGEIVQFLYGEDGM 809



 Score = 42.7 bits (99), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 30/52 (57%)

Query: 1109 NAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQ 1160
            N+ K  +K      A     K V  +F  SLA PGE VG LA+QS+GEP+TQ
Sbjct: 967  NSRKLMEKDKLGPQALDWLFKEVGRQFQRSLAPPGEVVGALAAQSIGEPATQ 1018



 Score = 41.6 bits (96), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 12 PGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASR 51
          PGHFGHI+ V PV+N      + T+L+ +C+ C     S+
Sbjct: 1  PGHFGHIEFVKPVFNIGFLPAVITVLRCVCYSCGKLLVSQ 40


>gi|324500904|gb|ADY40409.1| DNA-directed RNA polymerase III subunit RPC1 [Ascaris suum]
          Length = 1405

 Score =  323 bits (828), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 239/766 (31%), Positives = 371/766 (48%), Gaps = 128/766 (16%)

Query: 289  VPPIKFR--LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQ 346
            VPP   R  + S+      E   T+ LS+++  N  +   +      AK I   W +LQ 
Sbjct: 254  VPPCCIRPSVVSEVKSGTTEDDITMKLSEIMLIN-DIIRKHKKDGAPAKTISETWEHLQV 312

Query: 347  SVNVLFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYL 401
               +  + + +    DM       G  Q L+ K+G FR  L GKRV+++ R+VISPDP L
Sbjct: 313  QCALYINSELSGLPPDMQPKKPIRGFTQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNL 372

Query: 402  AVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKK 461
             ++++G+P + A  LT+PE V   N+ ++R  +ING +IHPGA H ++     RL  NK+
Sbjct: 373  RIDQVGVPIHVAKILTFPEIVNESNMERMRKLVINGDDIHPGANHIVE-----RLTGNKR 427

Query: 462  MRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVV 521
              +  G +  T+    V           G +V RHL D DVVL NRQP+LHK SIM+H  
Sbjct: 428  F-LRYGNREQTAAQLKV-----------GDIVERHLDDNDVVLFNRQPSLHKISIMSHRA 475

Query: 522  RVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDP 581
            +++ G +T R +   C+ YNADFDGDEMN+H PQ   +RAEA  ++   +  + P +G+P
Sbjct: 476  KIVPG-RTFRFNECACTPYNADFDGDEMNLHVPQTYEARAEASLLMGVKSNLITPRSGEP 534

Query: 582  LRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQE 641
            L + IQD I    L+T KD+F  R E  +        +S +     K   R+ I      
Sbjct: 535  LIAAIQDFITGGYLMTHKDSFFPRSEVHRF-------ASAIIDANAKKQSRIRIPP---- 583

Query: 642  VLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDR 701
                 PAI KP  LWTGKQ++  ++      RP                           
Sbjct: 584  -----PAIRKPVELWTGKQLVELII------RPDV------------------------- 607

Query: 702  KKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVR 761
              + K  L+ T K +K  +G ++  V+                    +  ++I  + L+ 
Sbjct: 608  --DSKVSLNLTTK-NKSYTGNEEFCVK--------------------DSYVIIRNSVLIC 644

Query: 762  GVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL--- 815
            GV+DKA     +   + + +   +G + A   +  L+R+  V+L   GF+ G+ D+    
Sbjct: 645  GVLDKALLGSGSKTNIFYILLRDFGEDAAVDAMWRLARMAPVYLTNRGFSIGIGDVRPGE 704

Query: 816  -ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
             +LK+K           +E     ++ +L+ E   +  P   + E  +A+          
Sbjct: 705  GLLKEKAALLAAGYKKCDE-----YITSLK-EGHLKAQPGCTEHETLEAL---------- 748

Query: 875  FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
              +K  S +  H   + +  L        +  N    M   G+KGS +N  Q+ + +GQQ
Sbjct: 749  -ILKELSAIRDHAGQACLRNL--------SRHNAPLTMAVCGSKGSFINISQMIACVGQQ 799

Query: 935  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
             + G R P     ++LP F      P A GF+ + F +GL P E++FH MAGREGLVDTA
Sbjct: 800  AISGHRPPDGFEDRSLPHFERRQKTPAAKGFVENSFYSGLTPTEFFFHTMAGREGLVDTA 859

Query: 995  VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            VKT+ +GY+QR L+K LE L ++YD +VR + G I++F +GEDG+D
Sbjct: 860  VKTAETGYMQRRLVKCLEDLCVNYDGTVRSSVGDIIEFTFGEDGLD 905



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 52/77 (67%), Gaps = 1/77 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            F++L   K   ++ +PG  VG +A+ S+GEPSTQMTL TFH AG   MN+T G+PR++EI
Sbjct: 1030 FIELCNDKLKRAVTEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEI 1089

Query: 1187 LTIASKDIKTPVITCPL 1203
            +    K I TP+IT  L
Sbjct: 1090 IN-GVKLISTPIITAAL 1105



 Score = 47.0 bits (110), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC Q    C GHFG++DL +PV++   F L   +L+ IC  C
Sbjct: 70  CQTCKQNLTDCVGHFGYVDLALPVFHVGFFRLTIQMLQCICKHC 113


>gi|336041419|gb|AEH95287.1| RNA polymerase II largest subunit [Malawimonas jakobiformis]
          Length = 1042

 Score =  323 bits (827), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 229/713 (32%), Positives = 337/713 (47%), Gaps = 138/713 (19%)

Query: 341  WMNLQQSV-NVL------FDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRS 393
            W+ LQ  V N++      F      G   +   I   L+ K G  R  LMGKRV+++ RS
Sbjct: 228  WLMLQYHVANIIETDISGFPKPVQKGSGRVLKSIRSRLKGKHGRIRGNLMGKRVDFSARS 287

Query: 394  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----D 449
            VI+ DP L+VNE+G+P   AL LTYPE VTP+N+ ++R  + NG   HPGA + +    +
Sbjct: 288  VITADPNLSVNEVGVPRTIALNLTYPETVTPFNIQRMRQLVENGPHKHPGANYVIREDGE 347

Query: 450  KLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQP 509
            +L   R+     + +S G K++                       RH+ DGDVV+ NRQP
Sbjct: 348  RLDLRRIRDRSTVPLSYGWKVE-----------------------RHIHDGDVVVFNRQP 384

Query: 510  TLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNA 569
            TLHK S+M H VRVL    T R++ +  + YNADFDGDEMN+H PQ   +RAE   ++  
Sbjct: 385  TLHKMSMMGHRVRVLP-YSTFRLNLSVTTPYNADFDGDEMNLHVPQSHETRAELEELMMV 443

Query: 570  NNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKP 629
                V P    P+  ++QD ++   L TK+DTFL RD     L         L S+ G  
Sbjct: 444  PRNIVSPQANKPVMGIVQDSLLGTKLFTKRDTFLERDLVNNTLM-------WLPSWDGHV 496

Query: 630  GQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFF 689
             +               PAI KP+ LWTGKQV + ++       PP  V R         
Sbjct: 497  PK---------------PAILKPKQLWTGKQVFSLIV-------PPVNVLR--------- 525

Query: 690  KTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSE 749
                 +    D++ ND    S T                                     
Sbjct: 526  ----KSIGAPDKEDNDDFTASDT------------------------------------- 544

Query: 750  EKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
             K+ I + +++ G++ K     A   LVH +    G       L ++  +   +L   GF
Sbjct: 545  -KVRIEQGEVLSGIVCKNTVGNASGSLVHIIWNELGHEATRNFLDSVQTVINYWLMNRGF 603

Query: 808  TCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGG 867
            + G+ D +       +     + ++ IG+             E+  +  +    K     
Sbjct: 604  SIGIGDTIA------DPATMQNITKIIGR----------SKQEVSDLITQLHEGKLEATP 647

Query: 868  GDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQI 927
            G   +  F+MK+ + LNK    +      + G L+ T  N    M T+G+KGS +N  Q+
Sbjct: 648  GRTLMETFEMKVNTALNKARDEA---GKAAVGSLRAT--NAAKEMVTAGSKGSNINIAQM 702

Query: 928  SSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGR 987
             + +GQQ +EGKR+P     +TLP F   D  P + GF+ + +L GL PQE++FH M GR
Sbjct: 703  IACVGQQNVEGKRIPYGFRNRTLPHFVTNDMTPESRGFVENSYLRGLNPQEFFFHAMGGR 762

Query: 988  EGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            EGL+DTAVKTS +GY+QR L+K +E + + YD +VR++ G +VQF YGEDG D
Sbjct: 763  EGLIDTAVKTSETGYIQRRLMKAMEDVMVKYDGTVRNSVGEVVQFLYGEDGFD 815


>gi|397135920|gb|AFO11455.1| RNA polymerase I, partial [Nakazawaea holstii]
          Length = 870

 Score =  323 bits (827), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 235/793 (29%), Positives = 376/793 (47%), Gaps = 147/793 (18%)

Query: 267  DMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVM-EHPQTVLLSKVLQANIYLA 324
            D  + GF        + L  VL VPP   R   +  D+   E   T  L+ +++ N+ + 
Sbjct: 29   DSYKLGFNDDYARPEWMLITVLPVPPPHVRPSVQVNDTARSEDDLTFKLADIVKYNMSVQ 88

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQ--------RDMASGICQLLEKKEG 376
               ++   + + ++A +  L Q     +   + AGQ        R + S I   L+ KEG
Sbjct: 89   KLEMD--GSPQHVIAEYEALLQFHVATYMDNDIAGQPQALQKSGRPIKS-IRARLKGKEG 145

Query: 377  LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
              R  LMGKRV+++ R+VIS DP L ++++G+P   A  LTYPE VTP+N+ KL + + N
Sbjct: 146  RLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPRSIARTLTYPEMVTPYNIHKLTELVRN 205

Query: 437  GAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYR 495
            G   HPGA +                    G ++D          +  D   + G +V R
Sbjct: 206  GPNEHPGARYVFR---------------DTGERIDLKYHK-----RAGDIALQYGWIVER 245

Query: 496  HLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQ 555
            HL D D VL NRQP+LHK S+MAH V+V+    T RM+ +  S YNADFDGDEMN+H PQ
Sbjct: 246  HLMDDDPVLFNRQPSLHKMSMMAHRVKVMP-YSTFRMNLSATSPYNADFDGDEMNLHVPQ 304

Query: 556  DEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSS 615
             E +RAE   I     Q V P +  P+  ++QD +     +T +D F+  DE   +LY  
Sbjct: 305  SEETRAELSQICAVPLQIVSPQSNKPIMGIVQDTLCGVRKMTLRDVFIEYDEVMNILY-- 362

Query: 616  GVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPP 675
                  +  + G+  +               P I KP+PLWTGKQ+++            
Sbjct: 363  -----WIPDWDGRIPE---------------PTIVKPKPLWTGKQMLS------------ 390

Query: 676  FVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEK 735
             V+ +G            N +++ +          K   + KD +G              
Sbjct: 391  MVIPKG-----------INIERKDE----------KFTYLSKDDTG-------------- 415

Query: 736  EAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSA 793
                            +LI   +++ GV++K      G  L+H V    G     TL   
Sbjct: 416  ----------------MLIVDGEIMLGVVNKKTVGATGGGLIHAVFREKGPQACATLFGN 459

Query: 794  LSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            + ++   +L  +GF+ G+ D +      R   + ++ +++  + +  +A   +       
Sbjct: 460  IQKVVNYWLLHNGFSIGIGDTIADAPTVRSITDTINAAKDKVQEIITKAQNNQ------- 512

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNW--ISL 911
              L  E    +R   +  V+    +    + K T+ S+              ++W  +  
Sbjct: 513  --LPPEPGMTLRESFEQNVSQVLNQARDDVGKATADSL--------------QDWNNVKQ 556

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            M ++G+KGS +N  Q+S+ +GQQ +EGKR+P   S ++LP F   D++P + GF+ + +L
Sbjct: 557  MVSAGSKGSNINISQMSACVGQQIVEGKRIPFGFSDRSLPHFTKDDYSPESKGFVENSYL 616

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
             GL PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD + R++ G+++Q
Sbjct: 617  RGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVLQ 676

Query: 1032 FCYGEDGVDVHQT 1044
            F YGEDG+D  Q 
Sbjct: 677  FVYGEDGLDATQV 689


>gi|118425869|gb|ABK90833.1| putative DNA-directed RNA polymerase I, partial [Hortaea werneckii]
          Length = 666

 Score =  323 bits (827), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 183/449 (40%), Positives = 264/449 (58%), Gaps = 39/449 (8%)

Query: 242 LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHS--IFFLGVVLVPPIKFRLPSK 299
           L PS +   +  L+E E  + S +    +Q     A  +  +FFL  +LVPP ++R  ++
Sbjct: 235 LNPSRIHAQLTALFEREQPILSAVYGHNRQSNKAAAPLTPDMFFLKDILVPPNRYRPEAR 294

Query: 300 -GGDSVMEHPQTVLLSKVLQA----NIYLANAYVNQPDNAKVIV-------ARWMNLQQS 347
            G + + E  +  L   +L A    N         +  +++  V         W+ LQ +
Sbjct: 295 TGSNEIAEAQENTLYKNILTACDTLNTIQRELSGKESRDSRYRVRTYGDFETTWITLQDA 354

Query: 348 VNVLFDG-----KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLA 402
           VN L D      + AA +R+   GI Q LEKKEG+FR+ +MGKRVN+A R+VISPDP + 
Sbjct: 355 VNSLIDRDRNPVQGAAAKRN-PEGIKQKLEKKEGMFRKYMMGKRVNFAARTVISPDPNIE 413

Query: 403 VNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL-STMRLP-PNK 460
            NEIG+PP FA++LTYPE VT WNV +L++++ NG  + PGA     +    + L   N 
Sbjct: 414 TNEIGVPPVFAVKLTYPEPVTSWNVEELQEAVRNGPFVWPGAVAIESETGQVINLERKNA 473

Query: 461 KMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHV 520
           + R ++  +L      I   G         K V+RHL +GD+V++NRQPTLHKPS+M H 
Sbjct: 474 EERTALANQLLAPSSTI---GAAGTRGTRNKKVHRHLNNGDIVIMNRQPTLHKPSMMCHR 530

Query: 521 VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGD 580
            RVL GEKTLRMHYANC+TYNADFDGDEMN+HFPQ+E++R+EA +I + ++QY+  + G+
Sbjct: 531 ARVLPGEKTLRMHYANCNTYNADFDGDEMNLHFPQNELARSEALSIADTDHQYLSSTAGN 590

Query: 581 PLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQ 640
           PLR LIQDH+     LT +DT   R E+ QLLYS+     G                ++ 
Sbjct: 591 PLRGLIQDHVSMGVALTSRDTLFERGEYMQLLYSALRPEHGHC--------------AQG 636

Query: 641 EVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
            ++ + PAI+KP+ LWTGKQV+T+VL ++
Sbjct: 637 RIVTVPPAIFKPKMLWTGKQVVTSVLKNL 665


>gi|326480447|gb|EGE04457.1| DNA-directed RNA polymerase II largest subunit [Trichophyton equinum
            CBS 127.97]
          Length = 1712

 Score =  323 bits (827), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 218/680 (32%), Positives = 329/680 (48%), Gaps = 138/680 (20%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  RQ LMGKRV+++ R+VI+ DP L+++E+G+P   A  LTYPE VTP+N+ +L
Sbjct: 345  LKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRL 404

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE- 489
               + NG ++HPGA H +                S G ++D         G    N  + 
Sbjct: 405  GQLVDNGPDVHPGARHVIR---------------SSGERIDLRH----HKGGGGRNFLQW 445

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G  V RHL DGD +L NRQP+LHK S+M+H VRV+    T R++ +  + YNADFDGDEM
Sbjct: 446  GWKVERHLMDGDFILFNRQPSLHKESMMSHRVRVMP-YSTFRLNLSVTTPYNADFDGDEM 504

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ E +RAE   +       V P    PL  ++QD +     + ++D FL +++  
Sbjct: 505  NLHVPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVM 564

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
             +L                     L       VLP  PAI KP P W+GKQ+I+ V    
Sbjct: 565  NVL---------------------LWVPDWDGVLPQ-PAILKPRPRWSGKQMISMV---- 598

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
                          LP      R + DK                                
Sbjct: 599  --------------LPSGLNLLRIDKDK-------------------------------- 612

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTA 787
             P  EK +         L++  +L++  +L+ G+  K      G  +VHT+   YG + A
Sbjct: 613  SPISEKFSP--------LADGGVLVHGGELMYGMFSKKTVGASGGGVVHTIFNEYGPDAA 664

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLI-------LKDKERERKNHLHGSEEIGKRVHL 840
             +  +    +   +L  +GF+ G+ D +        +++  R RK  +           L
Sbjct: 665  MSFFNGAQAVVNYWLLHNGFSIGIGDTIPDLETIQKIENAVRVRKEEVDSITASATENTL 724

Query: 841  EALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGL 900
            EAL   +  E      +S++ +A+    D A    +  +     K ++++V         
Sbjct: 725  EALPGMNVRET----FESKVSRALNNARDEAGTATEKSL-----KDSNNAV--------- 766

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
                       M  SG+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D++P
Sbjct: 767  ----------QMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSP 816

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
             + GF+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD 
Sbjct: 817  ESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDG 876

Query: 1021 SVRDADGSIVQFCYGEDGVD 1040
            +VR++ G IVQF YGEDG+D
Sbjct: 877  TVRNSLGDIVQFLYGEDGLD 896



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 3/112 (2%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFK--ASRREVEKCV 58
           C TC +    CPGHFGHI+L  PV++      +  LL+ +C  C   K  AS ++    +
Sbjct: 69  CATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQKYLDAL 128

Query: 59  RKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVR 110
           R  +   + D I   S D+ L  E+  PE+ D   K S   V   G   NV+
Sbjct: 129 RFRDPKKRFDAIWRLSKDI-LICEADPPEEDDPFAKESSKPVQGHGGCGNVQ 179


>gi|344247571|gb|EGW03675.1| DNA-directed RNA polymerase I subunit RPA1 [Cricetulus griseus]
          Length = 638

 Score =  323 bits (827), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 235/672 (34%), Positives = 325/672 (48%), Gaps = 119/672 (17%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q    C GH GHI+L + VYNPLLF+ LY LL+  C  CH     R  +   V +
Sbjct: 64  CSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAIHLLVCQ 123

Query: 61  LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
           L ++  G + A   L+  L     E++NP   ++  +                    +E+
Sbjct: 124 LRVLEVGALQAVYELERILSRFLEETANPSAFEIQEEL-------------------EEY 164

Query: 118 TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
           TS      K+     L  +     N C++++  I+   F   HM     PH         
Sbjct: 165 TS------KILQNNLLGSQGAHVKNVCESRSRLIA--YFWKTHMTAKRCPH--------- 207

Query: 175 GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
            C  G +    E    L                T+P T    A +      A PSGF   
Sbjct: 208 -CKTGRSVIRKEHNSKLTI--------------TYPVT----AHKKSGQKDAEPSGFFLN 248

Query: 235 KDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKF 294
             LFSG      + DI     E+ F    F  D                   ++VPP ++
Sbjct: 249 Y-LFSG------LDDIG---MESSFNPSMFFLDF------------------IVVPPSRY 280

Query: 295 RLPSKGGDSVMEHPQTVLLSKVLQANIYLAN--AYVNQPDNAKVIVARWMNLQQSVNVLF 352
           R  ++ GD +  + QTV L  V++  + +    A + Q       V      +  VN++F
Sbjct: 281 RPVNRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPCEVTELTTDKSHVNIVF 340

Query: 353 DGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYF 412
           D +      +   GI Q+LEKKEGLFR+ +MGKRV+YA RSVI PD Y+  NEIGIP  F
Sbjct: 341 DSEMDKLMMEKYPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVF 400

Query: 413 ALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL--DKLSTMRLPPNKKMRISIGRKL 470
           A +LTYP+ VTPWNV +LR ++ING  +HPGA+  +  D   T     +   R ++ ++L
Sbjct: 401 ATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDATQREAVAKQL 460

Query: 471 DTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTL 530
            T       P   +      K+V RH+++GD++L+NRQPTLH+PSI AH   +L  EK L
Sbjct: 461 LT-------PATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVL 513

Query: 531 RMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHI 590
           R+HYANC  YNADFDGDEMN HFPQ E+ RAEAY +   + QY+ P +G PL  LIQDH+
Sbjct: 514 RLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHM 573

Query: 591 VSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIW 650
           VS A +T +  F  R+++ +L+Y            T K G+  L            PAI 
Sbjct: 574 VSGANMTIRGCFFTREQYMELVYR---------GLTDKVGRVKLFP----------PAIL 614

Query: 651 KPEPLWTGKQVI 662
           KP PLWTGKQVI
Sbjct: 615 KPFPLWTGKQVI 626


>gi|520517|gb|AAA50229.1| RNA polymerase II, largest subunit, partial [Ilyanassa obsoleta]
          Length = 1343

 Score =  322 bits (826), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 247/814 (30%), Positives = 374/814 (45%), Gaps = 148/814 (18%)

Query: 256  ENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVMEHPQT 310
            E   E+   ISD +    G   + A      L V  VPP+  R P+    G +  +   T
Sbjct: 133  ERVLEIFKRISDEESLMLGMDPRFARPDWMILTVFPVPPLPVR-PAVVMFGSARNQDDLT 191

Query: 311  VLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASG---- 366
              L+ +++AN  L     N    A +I      LQ   + L D +     R +       
Sbjct: 192  HKLADIVKANNQLRRNEQNGA-AAHIIFEDSKMLQYHCSTLVDNEMPGLPRAVQKSGRPL 250

Query: 367  --ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTP 424
              + Q L+ KEG  R  LM KRV+++ R+VI+PDP L V+++G+P   A  LT+PE VTP
Sbjct: 251  KSVKQRLKGKEGRVRGNLMDKRVDFSGRTVITPDPNLRVDQVGVPRSIAHNLTFPELVTP 310

Query: 425  WNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP 480
            +N+  +++ +  GA ++PGA + +    +++     P    + + IG K++         
Sbjct: 311  FNIDVMQERVRRGANVYPGAKYIIRDNGERIDLRFHPKASDLHLQIGYKVE--------- 361

Query: 481  GKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTY 540
                          RH+QD DVV+ NRQPTLHK S+M H V+VL    T RM+ +  + Y
Sbjct: 362  --------------RHMQDNDVVIFNRQPTLHKMSMMCHRVKVLPW-STFRMNLSVTTPY 406

Query: 541  NADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKD 600
            NADFDGDEMN+H PQ   +RAE  N+       + P    P+  ++QD + +   +TK+D
Sbjct: 407  NADFDGDEMNLHLPQSLETRAEIMNLCAVPRMIITPQANRPVMGIVQDTLTAVRKMTKRD 466

Query: 601  TFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQ 660
             FL R +   LL         L ++ G+  Q               PAI KPEPLWTGKQ
Sbjct: 467  VFLTRAQMMHLLMF-------LPTWDGRMPQ---------------PAIIKPEPLWTGKQ 504

Query: 661  VITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKD-- 718
            + + V+     GR   +                                 +T+  H D  
Sbjct: 505  IFSLVIP----GRVNVI---------------------------------RTHSTHPDGE 527

Query: 719  KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVH 776
             SG  K +  G                   + K+LI   +L+ G++ K         LVH
Sbjct: 528  DSGPYKWISPG-------------------DTKVLIEDGELISGILCKKTLGTSAGSLVH 568

Query: 777  TVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGK 836
             V    G   AG L   +  +   +L + G + G+ D +         +   H  +E  +
Sbjct: 569  IVFLEMGFEVAGELYGNIQTVVNNWLLIEGHSIGIGDTI-------ADQQTYHEIQETIR 621

Query: 837  RVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN--KHTSSSVINE 894
            +   + +E+ + A  D      E+E      G+     F+ ++   LN  +  + S   +
Sbjct: 622  KAKADVIEVIEKAHND------ELEPT---PGNTLRQTFENQVNRILNDARDKTGSKAQK 672

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
             LSE        N    M  +G+KGSK+N  Q+ + +GQQ  EGKR+P     +TLP F 
Sbjct: 673  SLSEF-------NNFKAMVVAGSKGSKINISQVIACVGQQNAEGKRIPFGFRYRTLPHFI 725

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
              D+ P + GF+ + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR LIK +E +
Sbjct: 726  KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 785

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS 1048
             + YD +VR+    +VQ  YGEDG+D     F S
Sbjct: 786  MVKYDGTVRNQVEQLVQLGYGEDGLDACHVEFQS 819



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/94 (51%), Positives = 64/94 (68%), Gaps = 1/94 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            A++ A++   +E A    L  ++ +F  + A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 965  AKRVAEEHRLSEDAFNWLLGEIETRFQQAQAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1024

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            G    NVTLG+PRL+EI+ I SK  KTP +T  L
Sbjct: 1025 GVSAKNVTLGVPRLKEIINI-SKKPKTPSLTVYL 1057


>gi|118348890|ref|XP_001007918.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena
            thermophila]
 gi|89289685|gb|EAR87673.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena thermophila
            SB210]
          Length = 1759

 Score =  322 bits (826), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 246/784 (31%), Positives = 369/784 (47%), Gaps = 153/784 (19%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQP--DNAKVI 337
              L  +LVPP + R PS    S M  +   T    +VL+ N  + +   N+   +  + +
Sbjct: 238  LILTKLLVPPPQVR-PSIEMSSNMTCQDELTKCYEEVLKLNAQIKDNSDNRKLVEQIQSV 296

Query: 338  VARWM-NLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            VAR M N +  +  L        +  +     Q L+ KEG FRQ LMGKRV+++ RSVIS
Sbjct: 297  VARMMDNDKPRLEAL------KIKSKVVKSFSQRLKGKEGRFRQNLMGKRVDFSARSVIS 350

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PD  L ++E+G+P   A  LT PE V   N+ ++R+    G            K+ ++ +
Sbjct: 351  PDANLWLDELGVPRSIADSLTVPEIVNQQNINRIRELWKQG------------KIKSI-M 397

Query: 457  PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE---------------GKMVYRHLQDGD 501
             PN++ +I      +     I    + +D+ F+               G ++ R LQ+GD
Sbjct: 398  KPNREKQI-----YEAYDAIICSGDRQADDNFDMHVNDDYSYCSQIKIGVIIERALQNGD 452

Query: 502  VVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRA 561
             VL NRQP+LHK S+M H VR+L    T R++ +  + YNADFDGDEMN+H PQ   +R 
Sbjct: 453  YVLFNRQPSLHKMSMMGHRVRILP-YSTFRLNLSVTTPYNADFDGDEMNMHVPQSYETRV 511

Query: 562  EAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSG 621
            E   I +   Q V P    P+  L+QD ++  A+ T +D FL R++   L+         
Sbjct: 512  ELGYICHVPRQIVTPKANKPVMGLVQDSLLGVAMFTLRDKFLTREQVMNLVM-------W 564

Query: 622  LGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERG 681
            + ++ G               LP +PAI KPEPLWTGKQ+++ V                
Sbjct: 565  IDNWEGD--------------LP-MPAILKPEPLWTGKQIMSLV---------------- 593

Query: 682  GKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNK 741
              +P+    TRF  DK+ D+              HK                        
Sbjct: 594  --IPEQMTMTRFKGDKEDDK------------WFHK------------------------ 615

Query: 742  SKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALSRLFT 799
                   +E + IYK +L++G ++KA   D   GLVH +    G       ++   R+  
Sbjct: 616  ------QDESIYIYKGELIQGYMNKAIVGDGPGGLVHLIWLDIGHEETKNFMTRCQRVVN 669

Query: 800  VFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIK 855
             +L M G T    D++      ++ E+ RK      ++I        L+ +D A ID   
Sbjct: 670  NWLIMFGHTISCADIVPSEKCSEEIEKIRKKAFEKYDKI-------ELDFQDAAYID--- 719

Query: 856  LKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTS 915
                 +  M   G      F++++ S LN+    S   E  +E  +K    N  + M  S
Sbjct: 720  -----QNNMHKAGKKIFDSFEVQVNSILNELRQES---EKKAEETIK-FKYNQFNKMVWS 770

Query: 916  GAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLR 975
            G+KG   N  Q+   +GQQ +EG R+    S +TLP F   D    A GF+++ F  GL+
Sbjct: 771  GSKGKATNLAQVMGLVGQQNIEGARIRNGFSRRTLPHFCKDDNGIIARGFVVNNFYIGLK 830

Query: 976  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYG 1035
            P E++FH M GREGL DTAVKTSR+GY+QR L+K LE + + YD +VRD+ G I+Q CYG
Sbjct: 831  PYEFFFHTMGGREGLSDTAVKTSRTGYIQRKLVKALEDVIVRYDGTVRDSQGMIIQTCYG 890

Query: 1036 EDGV 1039
            ED +
Sbjct: 891  EDSL 894



 Score = 93.2 bits (230), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 65/87 (74%), Gaps = 4/87 (4%)

Query: 1118 LSNEMAKQDFLKLVKH---KFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEM 1174
            L ++++ + F KL K    KF  +++ PGE +G +++QSVGEP+TQMTLNTFH AG  + 
Sbjct: 1084 LRHKLSMEVFDKLTKEIFDKFKKAISHPGETIGAISAQSVGEPTTQMTLNTFHFAGVSDR 1143

Query: 1175 NVTLGIPRLQEILTIASKDIKTPVITC 1201
            NVTLG+PRLQEIL  ASK++KTP +T 
Sbjct: 1144 NVTLGVPRLQEILD-ASKNVKTPEMTV 1169



 Score = 46.2 bits (108), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           CKTC Q+   CPGHFG+I+L  P+Y+    N +  +L  +C  C
Sbjct: 66  CKTCNQKN-ECPGHFGYINLRRPIYHINFINTVKQILLCVCHKC 108


>gi|448087303|ref|XP_004196296.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
 gi|359377718|emb|CCE86101.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
          Length = 1772

 Score =  322 bits (826), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 249/791 (31%), Positives = 381/791 (48%), Gaps = 153/791 (19%)

Query: 272  GFGKKAGHSIFFLGVVL-VPP------IKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA 324
            GF +      + L  VL VPP      I F   ++G D +     T  L+ +L+ANI + 
Sbjct: 228  GFNEDYARPEWMLITVLAVPPPPVRPSIAFNDTARGEDDL-----TFKLADILKANINVQ 282

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQ--------RDMASGICQLLEKKEG 376
               ++   + + +++ +  L Q     +   + AGQ        R + S I   L+ KEG
Sbjct: 283  RLEMD--GSPQHVISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKS-IRARLKGKEG 339

Query: 377  LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
              R  LMGKRV+++ R+VIS DP L ++++G+P   A  L+YPE VTP+N+ +L + + N
Sbjct: 340  RLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLSYPEIVTPYNIHRLTEYVRN 399

Query: 437  GAEIHPGATHYL-DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYR 495
            G   HPGA + + D    + L  NK+                     D   ++ G  V R
Sbjct: 400  GPNEHPGAKYVIRDTGDRIDLRYNKR-------------------AGDIALQY-GWKVER 439

Query: 496  HLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQ 555
            HL D D VL NRQP+LHK S+M+H V+V+    T R++ +  S YNADFDGDEMN+H PQ
Sbjct: 440  HLMDNDPVLFNRQPSLHKMSMMSHKVKVMP-YSTFRLNLSVTSPYNADFDGDEMNLHVPQ 498

Query: 556  DEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSS 615
               +RAE   I     Q V P +  P+  ++QD +     +T +DTF+  D+   +LY  
Sbjct: 499  SPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFIEYDQVMNMLYWI 558

Query: 616  GVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPP 675
             V                        V+P  PAI KP+PLWTGKQ+++            
Sbjct: 559  PVWDG---------------------VIP-PPAIVKPKPLWTGKQLLSMA---------- 586

Query: 676  FVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEK 735
                    +P+     RF+ D ++     D G L                +V+G      
Sbjct: 587  --------IPKGIHLQRFD-DGKNLLSPKDSGML----------------IVDG------ 615

Query: 736  EAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSA 793
                                  +++ GV+DK        GL+HTV    G      L  +
Sbjct: 616  ----------------------EIMFGVVDKKTVGSTGGGLIHTVMREKGPQVCAQLFGS 653

Query: 794  LSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            L ++   +L  +GF+ G+ D +         KN     E+  K+V     E+ + A+ + 
Sbjct: 654  LQKVVNYWLLHNGFSIGIGDTIA---DASTMKNVTTTIEDAKKKVQ----EIINDAQQN- 705

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
             KL  E    +R         F+  ++  LN+   ++  +   +E  LK    N +  M 
Sbjct: 706  -KLDPEPGMTLRES-------FEHNVSRVLNQARDTAGRS---AEMNLKDL--NNVKQMV 752

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SG+KGS +N  Q+S+ +GQQ +EGKR+P   + +TLP F   D++P + GF+ + +L G
Sbjct: 753  VSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRG 812

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            L PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD + R++ G I+QF 
Sbjct: 813  LTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFI 872

Query: 1034 YGEDGVDVHQT 1044
            YGEDG+D  Q 
Sbjct: 873  YGEDGIDGTQV 883



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 68/94 (72%), Gaps = 1/94 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + +  +++  N+++ +  L  ++ +F  S+  PGE VG++A+QS+GEP+TQMTLNTFH A
Sbjct: 1034 SRRVIEEYKLNKISFEWVLGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQMTLNTFHYA 1093

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            G    NVTLG+PRL+EIL +A K+IKTP +T  L
Sbjct: 1094 GVSSKNVTLGVPRLKEILNVA-KNIKTPALTVYL 1126



 Score = 45.4 bits (106), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC +    CPGHFGHI+L  PV++      +  + + IC  C
Sbjct: 68  CQTCSEDMTECPGHFGHIELAKPVFHIGFIAKIKKVCECICMHC 111


>gi|412989108|emb|CCO15699.1| DNA-directed RNA polymerase III largest subunit [Bathycoccus
            prasinos]
          Length = 1499

 Score =  322 bits (826), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 222/688 (32%), Positives = 336/688 (48%), Gaps = 133/688 (19%)

Query: 366  GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPW 425
            G  Q L+ K+G FR  L GKRV++  R+VISPDP L ++E+G+P + A++LTYPE V   
Sbjct: 361  GFVQRLKGKQGRFRGNLSGKRVDFTARTVISPDPNLRIDEVGLPQHIAMQLTYPETVNNN 420

Query: 426  NVVKLRDSIINGAEIHPGATHYLDK----LSTMRLPPNKKMRISIGRKLDTSRGAIVQPG 481
            N+ +LR  IING    PGA     K     S   L    + R++  +KL           
Sbjct: 421  NIAELRQLIINGEGKWPGANFVKSKQSGHFSAQYLKYGDRNRVA--KKLKP--------- 469

Query: 482  KDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYN 541
                    G +V RH++DGD+VL NRQP+LHK SIMAH  +V+   +TLR +   C+ YN
Sbjct: 470  --------GDIVERHVRDGDIVLFNRQPSLHKMSIMAHRAKVMPW-RTLRFNECVCAPYN 520

Query: 542  ADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDT 601
            ADFDGDEMN+H PQ E +RAEA +++        P NG+ L +  QD + ++ LLT K+ 
Sbjct: 521  ADFDGDEMNIHLPQTEEARAEAISLMGVTQNLCTPKNGEILIAATQDFLTASFLLTSKEV 580

Query: 602  FLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQV 661
            F +R +F QL   +   S  L S                  LP  PAI KP  +WTGKQ+
Sbjct: 581  FFDRSQFGQL---AAYMSDALESID----------------LP-SPAIVKPIEMWTGKQI 620

Query: 662  ITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSG 721
             + ++      RP        ++    F     ++K            +K N+      G
Sbjct: 621  FSVLI------RP--------RMRDQIFVNLEVSEK----------AYTKVNQQMCSNDG 656

Query: 722  ----KKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHT 777
                +  E++ G+ G+      NK+                              GL + 
Sbjct: 657  YVCIQNSEIISGQLGKATLGGGNKT------------------------------GLFYV 686

Query: 778  VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHL-HGSEEIGK 836
            +   YG++ A   ++ L++L   ++ + GF+ G+DD+    + ERE++N +  G  +  +
Sbjct: 687  LNSDYGADVAANAMNRLAKLAARWIGIRGFSIGIDDVKPSPELEREKQNRVDSGYAKCDE 746

Query: 837  RV---HLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVIN 893
            R+       L+L+ G   +   L++E+   +                         S + 
Sbjct: 747  RIASFEKGTLDLQPGCNAEQT-LEAEVLGVL-------------------------SAVR 780

Query: 894  ELLSEGLLKPTGK-NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPS 952
            E      L    K N   +M   G+KGS +N  Q+ + +GQQ + G R P     ++LP 
Sbjct: 781  EAAGNACLDALPKLNSPLVMALCGSKGSTINISQMMACVGQQAVGGTRPPDGFFERSLPH 840

Query: 953  FHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE 1012
            F   +  P A GF+ + F +GL P E++FH MAGREGLVDTAVKT+ +GY+ R L+K LE
Sbjct: 841  FKRGEKTPAAKGFVANSFYSGLLPTEFFFHTMAGREGLVDTAVKTAETGYMSRRLMKALE 900

Query: 1013 CLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             L + YD +VR++ G IVQ  YG+DG++
Sbjct: 901  DLSLGYDGTVRNSSGDIVQLEYGDDGME 928



 Score = 86.7 bits (213), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 55/81 (67%), Gaps = 1/81 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            FLK    K+     +PG  VG + +QS+GEP TQMTL TFH AG   MN+TLG+PR++EI
Sbjct: 1069 FLKACVQKYKSKRIEPGTAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEI 1128

Query: 1187 LTIASKDIKTPVITCPLLVGK 1207
            +  A+K+I TP+IT  L+  K
Sbjct: 1129 IN-ATKNISTPIITAKLISDK 1148



 Score = 42.0 bits (97), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TC  +   C GHFG++ L +PV++   F  +   L+ +C  C        E E+ + K
Sbjct: 90  CQTCKGKIMDCSGHFGYLKLELPVFHVGYFKAIVHCLQCVCKECSCLLMKEEEQEEMLTK 149

Query: 61  L 61
           L
Sbjct: 150 L 150


>gi|397135892|gb|AFO11441.1| RNA polymerase I, partial [Debaryomyces hansenii]
          Length = 872

 Score =  322 bits (826), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 237/768 (30%), Positives = 367/768 (47%), Gaps = 154/768 (20%)

Query: 292  IKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVL 351
            I F   ++G D +     T  L+ VL+ANI +    ++   + + +++ +  L Q     
Sbjct: 63   IAFNDTARGEDDL-----TFKLADVLKANINVQRLEMD--GSPQHVISEFEALLQFHVAT 115

Query: 352  FDGKNAAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
            +   + AGQ        R + S I   L+ KEG  R  LMGKRV+++ R+VIS DP L +
Sbjct: 116  YMDNDIAGQPQALQKTGRPIKS-IRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDL 174

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL-DKLSTMRLPPNKKM 462
            +++G+P   A  L+YPE VTP+N+ +L + + NG   HPGA + + D    + L  NK+ 
Sbjct: 175  DQVGVPISIARTLSYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKRA 234

Query: 463  RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
                        G I            G  V RHL D D VL NRQP+LHK S+MAH V+
Sbjct: 235  ------------GDIALQ--------YGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVK 274

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            V+    T R++ +  S YNADFDGDEMN+H PQ + +RAE   I     Q V P +  P+
Sbjct: 275  VMP-YSTFRLNLSVTSPYNADFDGDEMNLHVPQSQETRAELSQICAVPLQIVSPQSNKPV 333

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
              ++QD +     +T +D F+  D+   +LY        + ++ G              V
Sbjct: 334  MGIVQDTLCGVRKMTLRDNFIEYDQVMNMLY-------WIPNWDG--------------V 372

Query: 643  LPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRK 702
            +P  PAI  P+PLWTGKQ+++                    +P+     RF+ D ++   
Sbjct: 373  IP-PPAIVSPKPLWTGKQLLSMA------------------IPKGIHLQRFD-DGKNLLS 412

Query: 703  KNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRG 762
              D G L                VV+G                            +++ G
Sbjct: 413  PKDNGML----------------VVDG----------------------------EIMFG 428

Query: 763  VIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDK 820
            V+DK        GL+HTV    GS     L S++ ++   +L  +GF+ G+ D +     
Sbjct: 429  VVDKKTVGATGGGLIHTVMREKGSQVCAQLFSSIQKVVNFWLLHNGFSIGIGDTIADSST 488

Query: 821  ERERKNHLHGSEEIGKRVHLEA----LELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFD 876
             R+    +  +++  + + L+A    LE E G  +     +  + + +    D A    +
Sbjct: 489  MRDVTTTIQDAKDKVQEIILDAQSNKLEPEPGMTLRE-SFEHNVSRVLNQARDTAGRSAE 547

Query: 877  MKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
            M +    N                        +  M  SG+KGS +N  Q+S+ +GQQ +
Sbjct: 548  MNLKDLNN------------------------VKQMVVSGSKGSFINISQMSACVGQQIV 583

Query: 937  EGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVK 996
            EGKR+P   + ++LP F   D++P + GF+ + +L GL PQE++FH MAGREGL+DTAVK
Sbjct: 584  EGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVK 643

Query: 997  TSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT 1044
            T+ +GY+QR L+K LE + + YD S R++ G I+QF YGEDG+D  Q 
Sbjct: 644  TAETGYIQRRLVKALEDIMVHYDGSTRNSLGDIIQFVYGEDGIDGTQV 691


>gi|378732247|gb|EHY58706.1| DNA-directed RNA polymerase III subunit C1 [Exophiala dermatitidis
            NIH/UT8656]
          Length = 1581

 Score =  322 bits (824), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 245/779 (31%), Positives = 374/779 (48%), Gaps = 143/779 (18%)

Query: 282  FFLGVVLVPPIKFRLPSKGGD-SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
            F    +  PP+  R PS G + +  E   T  L  ++ AN  L  A + +    + +V  
Sbjct: 266  FLWLYIPAPPVCIR-PSVGQEGASTEDDITAKLGDIVAANNALREA-IEKGAPVQSVVEH 323

Query: 341  W----MNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            W    +NL   +N    G           G  Q L+ K+G FR  L GKRV+++ R+VIS
Sbjct: 324  WDYLTLNLAMYINSDVPGLAKGEFGKQIRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVIS 383

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PDP L ++E+ +P   A  +TYPE V   N+ KLR  + NG ++ PGA +Y+ K      
Sbjct: 384  PDPNLRIDEVAVPILVAKNMTYPEVVNEINIEKLRQRVRNGTKVWPGA-NYVYK------ 436

Query: 457  PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
             P+   RI +            +P   +    EG +V RHL+DGD+VL NRQP+LHK SI
Sbjct: 437  -PDGDFRIFL---------KFGKPELIAKELKEGDIVERHLEDGDIVLFNRQPSLHKLSI 486

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            ++H V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +R EA  ++   +  V P
Sbjct: 487  LSHFVKV-RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEATLLMGVKHNIVTP 545

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
             NG+P+ S IQD I ++ LL+  D F ++  F  +                     +L  
Sbjct: 546  KNGEPIISAIQDFITASFLLSSLDQFFDKKTFVTMCIG------------------MLEP 587

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
             ++ E+ P  PA+ KP+ LWTGKQV + +L      RP                     +
Sbjct: 588  DTKFELPP--PAVIKPQTLWTGKQVFSVML------RP---------------------N 618

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
            KQS    N        ++ H              PG            ++L ++  L  +
Sbjct: 619  KQSPVTVNLDAASRDHSQYH--------------PG----------LHRDLQDDSFLCIR 654

Query: 757  N-DLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
            N +++ G +DKA         + + +   +G + A   ++ LS+L   +L   GFT G+ 
Sbjct: 655  NSEVLCGRMDKATVGSGKKNSVFYILYRDFGPDAAAQGMNRLSKLCARWLGNQGFTVGIS 714

Query: 813  DLL----ILKDKE-------RERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIE 861
            D+     ++K K         E K  +  S+E GK      L+     E + I++ S + 
Sbjct: 715  DVTPPDPLVKAKHEMIAKVFEECKAFVRLSKE-GKLKRKPGLDDAGTLEAEQIRILSTVR 773

Query: 862  KAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSK 921
              + G            +T+QL+K  S  V                    M  SG+KGS 
Sbjct: 774  TNIAG-----------LLTAQLSKRNSPMV--------------------MAISGSKGSN 802

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            +N  Q+++ LGQQ++EGKRV      +TLP F   + +P + GFI + F +GL P E+ F
Sbjct: 803  INVAQMAALLGQQDIEGKRVQDGFQDRTLPHFAKHERSPPSKGFISNSFFSGLLPYEFLF 862

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            H + GR GLVDTAVKT+ +GY+ R L+K+LE L   YD +VR++  +IVQF +G+D +D
Sbjct: 863  HAVGGRVGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDRTVRNSASNIVQFRFGDDELD 921



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 56/84 (66%), Gaps = 1/84 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            +E   + F+ L   K+  +  +P   VG + +QS+GEP TQMTL TFH AG   M++T G
Sbjct: 1104 SERTLRAFINLCLEKYERARTEPAHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSLTAG 1163

Query: 1180 IPRLQEILTIASKDIKTPVITCPL 1203
            +PR++EI+  ASKDI TPVITC L
Sbjct: 1164 VPRIKEIIN-ASKDISTPVITCRL 1186



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C+TCG++   C GHFGH+ LV+PV++   F  +  +L+ IC  C      +A RR+    
Sbjct: 79  CQTCGEQLQTCNGHFGHVKLVLPVFHVGYFKKVIQILQSICKDCSAILLSEADRRKYHNA 138

Query: 58  VRKL 61
           +R++
Sbjct: 139 LRRV 142


>gi|397135932|gb|AFO11461.1| RNA polymerase I, partial [Candida blankii]
          Length = 872

 Score =  322 bits (824), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 218/677 (32%), Positives = 325/677 (48%), Gaps = 130/677 (19%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VI+ DP L ++++G+P   A  LTYPE VTP+N+ +L
Sbjct: 142  LKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQVGVPKSIARTLTYPEIVTPYNIQRL 201

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE- 489
             + + NG   HPGA + +                  G ++D     +    +  D   + 
Sbjct: 202  SELVRNGPNEHPGAKYVIR---------------DTGERID-----LRYHKRAGDIALQY 241

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G  V RH+ D D VL NRQP+LHK S+MAH V+V+    T R++ +  S YNADFDGDEM
Sbjct: 242  GWKVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVMP-YSTFRLNLSVTSPYNADFDGDEM 300

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ E +RAE   I     Q V P +  P+  ++QD +     LT++DTFL  D+  
Sbjct: 301  NLHVPQSEETRAELSQIAAVPLQIVSPQSNKPVMGIVQDTLCGIRKLTRRDTFLEYDQVM 360

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
             +L+        +  + G              ++P  PAI KP+PLWTGKQ+++      
Sbjct: 361  NILF-------WVPQWNG--------------IVP-QPAILKPKPLWTGKQMVSLT---- 394

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
                          +P   F  RF+        K D G L             K E+V G
Sbjct: 395  --------------IPSGIFLQRFDEGTTWLSPK-DNGMLI-----------AKGEIVYG 428

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTA 787
                                              +DKA       GL+HT+    G    
Sbjct: 429  ---------------------------------AVDKATVGSTGGGLIHTIMREKGPQVC 455

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED 847
                 A+ ++   +L  +GF+ G+ D +      R+  N +  +++       EA +   
Sbjct: 456  CNFFGAVQKVVNFWLLHNGFSIGIGDTIADSATMRDITNAISEAKQAVAGFIEEAHQ--- 512

Query: 848  GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKN 907
                          K  +  G      F+ K+   LN+    +  +  +S      T KN
Sbjct: 513  -------------NKLKQAAGMTLRETFEQKVMVALNEARDQAGKSSQVS-----LTEKN 554

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
             +  M  SG+KGS +N  Q+S+ +GQQ +EGKR+P   + ++LP F   D+ P + GFI 
Sbjct: 555  NVKQMVVSGSKGSFINISQMSACVGQQVVEGKRIPFGFADRSLPHFTKDDFGPESRGFIE 614

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
            + +L GL PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD + R++ G
Sbjct: 615  NSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVQYDGTTRNSLG 674

Query: 1028 SIVQFCYGEDGVDVHQT 1044
             I+QF YGEDG+D  Q 
Sbjct: 675  DIIQFLYGEDGLDGAQV 691


>gi|120561229|gb|ABM27000.1| RNA polymerase II largest subunit, partial [Blastocladiella
            emersonii]
          Length = 1005

 Score =  321 bits (823), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 214/673 (31%), Positives = 332/673 (49%), Gaps = 126/673 (18%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VI+ DP L+++++G+P   AL LTYPE VT  N+ +L
Sbjct: 250  LKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQVGVPRSIALNLTYPEMVTRHNIRRL 309

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAI-VQPGKDSDNEFE 489
            ++ +  GAE HPGA + +                    + D SR  + V   + + N   
Sbjct: 310  QEMVHRGAEEHPGAKYVI--------------------RPDGSRVDLRVSGAQGAPNLQP 349

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G +V RHL D DV++ NRQP+LHK S+M H V+V+    T R++ +  S YNADFDGDEM
Sbjct: 350  GWVVERHLSDNDVIIFNRQPSLHKMSMMGHKVKVMP-YSTFRLNLSVTSPYNADFDGDEM 408

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ   +RAE   +     Q V P +  P+  ++QD +      T++DTF+++    
Sbjct: 409  NLHVPQSVEARAEIQQLCMVPLQIVSPQSNKPVMGIVQDTLCGITKFTRRDTFMDKAMVM 468

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
             LL              G  G            +P +PAI KP+PLWTGKQ+++ +    
Sbjct: 469  NLLM----------WVPGWDGN-----------VP-VPAILKPKPLWTGKQILSLI---- 502

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
                                                   + K N +    +    E  + 
Sbjct: 503  ---------------------------------------IPKVNCITLHSTHPDGETTDI 523

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTA 787
             PG+ +                +++   +L+ G++ K        GLVH     +G   A
Sbjct: 524  SPGDTR----------------VIVEDGELLAGIVCKKTVGTSAGGLVHVSWMEHGPEAA 567

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED 847
              LL+    +   +L  +GF+ G+ D  I  D   +R N L G    G    +EA     
Sbjct: 568  KALLNGCQTIVNHWLLHNGFSIGIGD-TIADDDTMQRINELIGEARAGVNAVIEA----- 621

Query: 848  GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKN 907
             A+ D +K+++         G      F+ ++   LN   +++      S  +      N
Sbjct: 622  -AQKDTLKVET---------GLTLRETFEAQVNRLLNGAVNAAGGAAAKSFKV-----HN 666

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
             +  M  +G+KGS +N  Q+S+ +GQQ +EGKR+P     ++LP F   D++P + GF+ 
Sbjct: 667  NVKHMVVAGSKGSNINISQMSACVGQQNVEGKRIPFGFQYRSLPHFVKDDYSPESRGFVE 726

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
            + +L GL PQE++FH M GREGL+DTAVKT+ +GY+QR L+K LE + + YD +VR+A G
Sbjct: 727  NSYLRGLNPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVKYDGTVRNAQG 786

Query: 1028 SIVQFCYGEDGVD 1040
            +I+QF YGEDG+D
Sbjct: 787  NIIQFAYGEDGMD 799


>gi|322704718|gb|EFY96310.1| DNA-directed RNA polymerase III [Metarhizium anisopliae ARSEF 23]
          Length = 1447

 Score =  321 bits (823), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 228/771 (29%), Positives = 366/771 (47%), Gaps = 123/771 (15%)

Query: 281  IFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
            +F    V  PP+  R      ++  E   T  L+ ++  +  + +A + +    + I+ +
Sbjct: 260  MFIWQFVPAPPVCIRPSVAQDNASNEDDLTTKLADIVWVSGMIRSA-LQKGSPIQTIMEQ 318

Query: 341  WMNLQQS----VNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            W  LQ      VN    G    G      G CQ L+ K+G FR  L GKRV+++ R+VIS
Sbjct: 319  WEYLQTQIAMYVNSDVPGLQQPGFGKSTRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVIS 378

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PDP L ++++ +P   A  LTYPE+V   N+ KLR  + NG ++ PGA   L K      
Sbjct: 379  PDPNLGIDQVAVPQLVAKNLTYPEKVNRQNIEKLRQCVRNGCDVWPGAQGILKKEDDSYY 438

Query: 457  PPNKKMRISIG-RKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
                K  +  G R L   + +             G +V RHL+DGDVVL NRQP+LHK S
Sbjct: 439  ----KFNLRFGNRDLAAKQLSY------------GDIVERHLEDGDVVLFNRQPSLHKLS 482

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            IM+H+ ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA N++        
Sbjct: 483  IMSHLAKI-RPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAINLMGVKYNLAT 541

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF---CQLLYSSGVSSSGLGSFTGKPGQR 632
            P NG+P+ +  QD I +A LL+ KD F +R  F   C  +   G                
Sbjct: 542  PKNGEPIIAATQDFITAAFLLSSKDRFFDRKSFSYICMHMMEQG---------------- 585

Query: 633  VLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 692
                 ++ E+ P  PAI  P+ LWTGKQ+ + ++                  P      +
Sbjct: 586  -----TKIEIPP--PAIVAPKALWTGKQIFSIMMR-----------------PNKDCSVK 621

Query: 693  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL 752
             N D                          K    + +PG+  + + N        +  L
Sbjct: 622  INLD-------------------------AKCRAYKARPGQCPDMDPN--------DGWL 648

Query: 753  LIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTC 809
            ++  ++++ G +DK+         + + +   +G + A   ++ L++L    L   GF+ 
Sbjct: 649  VVRNSEVMCGRMDKSTVGSGKKDSIFYVILRDFGPDEAVIAMNRLAKLCARALTNRGFSI 708

Query: 810  GVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGD 869
            GV D+   +    E++N +  + ++   + +E  +     +     ++  +E ++ G   
Sbjct: 709  GVGDVFPTETLNVEKENLVSTAYKMCDDL-IETFKQGKLDKAPGCNMEQTLENSISG--- 764

Query: 870  AAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISS 929
                     + S++ +   S  I+ L        +  N   +M  SG+KGS +N  Q+ +
Sbjct: 765  ---------ILSKVRQQAGSYCIDTL--------SRNNAPLIMAQSGSKGSDINVAQMVA 807

Query: 930  HLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREG 989
             +GQQ + G+RVP     ++LP FH     P + GF+ + F TGL P E+ FH ++GREG
Sbjct: 808  VVGQQIIGGQRVPDGFQDRSLPHFHKNARQPPSKGFVKNSFYTGLFPTEFLFHAISGREG 867

Query: 990  LVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            LVDTAVKT+ +GY+ R L+K+LE L   YD +VR + G IVQF +G D +D
Sbjct: 868  LVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSGGGIVQFQFGADKLD 918



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 57/78 (73%), Gaps = 1/78 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            F+K+   K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   M++T G+PR++EI
Sbjct: 1052 FIKMCLEKYKKAHVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEI 1111

Query: 1187 LTIASKDIKTPVITCPLL 1204
            +  ASK+I TPVITCPL+
Sbjct: 1112 IN-ASKNISTPVITCPLM 1128


>gi|448082723|ref|XP_004195204.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
 gi|359376626|emb|CCE87208.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
          Length = 1758

 Score =  321 bits (823), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 247/791 (31%), Positives = 381/791 (48%), Gaps = 153/791 (19%)

Query: 272  GFGKKAGHSIFFLGVVL-VPP------IKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLA 324
            GF +      + L  VL VPP      I F   ++G D +     T  L+ +L+ANI + 
Sbjct: 228  GFNEDYARPEWMLITVLAVPPPPVRPSIAFNDTARGEDDL-----TFKLADILKANINVQ 282

Query: 325  NAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQ--------RDMASGICQLLEKKEG 376
               ++   + + +++ +  L Q     +   + AGQ        R + S I   L+ KEG
Sbjct: 283  RLEMD--GSPQHVISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKS-IRARLKGKEG 339

Query: 377  LFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIIN 436
              R  LMGKRV+++ R+VIS DP L ++++G+P   A  L+YPE VTP+N+ +L + + N
Sbjct: 340  RLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLSYPEIVTPYNIHRLTEYVRN 399

Query: 437  GAEIHPGATHYL-DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYR 495
            G   HPGA + + D    + L  NK+                     D   ++ G  V R
Sbjct: 400  GPNEHPGAKYVIRDTGDRIDLRYNKR-------------------AGDIALQY-GWKVER 439

Query: 496  HLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQ 555
            HL D D VL NRQP+LHK S+M+H V+V+    T R++ +  S YNADFDGDEMN+H PQ
Sbjct: 440  HLMDNDPVLFNRQPSLHKMSMMSHRVKVMP-YSTFRLNLSVTSPYNADFDGDEMNLHVPQ 498

Query: 556  DEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSS 615
               +RAE   I     Q V P +  P+  ++QD +     +T +DTF+  D+   +LY  
Sbjct: 499  SPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIEYDQVMNMLYWI 558

Query: 616  GVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPP 675
             V                        V+P  PAI KP+PLWTGKQ+++            
Sbjct: 559  PVWDG---------------------VIP-PPAIVKPKPLWTGKQLLSMA---------- 586

Query: 676  FVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEK 735
                    +P+     RF+ D ++     D G L                +V+G      
Sbjct: 587  --------IPKGIHLQRFD-DGKNLLSPKDSGML----------------IVDG------ 615

Query: 736  EAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSA 793
                                  +++ GV+DK        GL+HTV    G      L  +
Sbjct: 616  ----------------------EIMFGVVDKKTVGSTGGGLIHTVMREKGPQVCAQLFGS 653

Query: 794  LSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
            + ++   +L  +GF+ G+ D +         KN     E+  ++V     E+ + A+ + 
Sbjct: 654  IQKVVNYWLLHNGFSIGIGDTIA---DASTMKNVTTTIEDAKRKVQ----EIINDAQQN- 705

Query: 854  IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
             KL  E    +R         F+  ++  LN+   ++  +   +E  LK    N +  M 
Sbjct: 706  -KLDPEPGMTLRES-------FEHNVSRVLNQARDTAGRS---AEMNLKDL--NNVKQMV 752

Query: 914  TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
             SG+KGS +N  Q+S+ +GQQ +EGKR+P   + +TLP F   D++P + GF+ + +L G
Sbjct: 753  VSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRG 812

Query: 974  LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
            L PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD + R++ G I+QF 
Sbjct: 813  LTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFI 872

Query: 1034 YGEDGVDVHQT 1044
            YGEDG+D  Q 
Sbjct: 873  YGEDGIDGTQV 883



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 67/94 (71%), Gaps = 1/94 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + +  +++  N ++ +  L  ++ +F  S+  PGE VG++A+QS+GEP+TQMTLNTFH A
Sbjct: 1034 SRRVVEEYKLNRISFEWVLGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQMTLNTFHYA 1093

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            G    NVTLG+PRL+EIL +A K+IKTP +T  L
Sbjct: 1094 GVSSKNVTLGVPRLKEILNVA-KNIKTPALTVYL 1126



 Score = 45.4 bits (106), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC +    CPGHFGHI+L  PV++      +  + + IC  C
Sbjct: 68  CQTCSEDMTECPGHFGHIELAKPVFHIGFIAKIKKVCECICMHC 111


>gi|302503240|ref|XP_003013580.1| hypothetical protein ARB_00027 [Arthroderma benhamiae CBS 112371]
 gi|291177145|gb|EFE32940.1| hypothetical protein ARB_00027 [Arthroderma benhamiae CBS 112371]
          Length = 1635

 Score =  321 bits (823), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 217/680 (31%), Positives = 329/680 (48%), Gaps = 138/680 (20%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  RQ LMGKRV+++ R+VI+ DP L+++E+G+P   A  LTYPE VTP+N+ +L
Sbjct: 236  LKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRL 295

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE- 489
               + NG ++HPGA + +                S G ++D         G    N  + 
Sbjct: 296  GQLVDNGPDVHPGARYVIR---------------SSGERIDLRH----HKGGGGRNFLQW 336

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G  V RHL DGD +L NRQP+LHK S+M+H VRV+    T R++ +  + YNADFDGDEM
Sbjct: 337  GWKVERHLMDGDFILFNRQPSLHKESMMSHRVRVMP-YSTFRLNLSVTTPYNADFDGDEM 395

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ E +RAE   +       V P    PL  ++QD +     + ++D FL +++  
Sbjct: 396  NLHVPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVM 455

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
             +L                     L       VLP  PAI KP P W+GKQ+I+ V    
Sbjct: 456  NVL---------------------LWVPDWDGVLPQ-PAILKPRPRWSGKQMISMV---- 489

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
                          LP      R + DK                                
Sbjct: 490  --------------LPSGLNLLRIDKDK-------------------------------- 503

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTA 787
             P  EK +         L++  +L++  +L+ G+  K      G  +VHT+   YG + A
Sbjct: 504  SPISEKFSP--------LADGGVLVHGGELMYGMFSKKTVGASGGGVVHTIFNEYGPDAA 555

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLI-------LKDKERERKNHLHGSEEIGKRVHL 840
             +  +    +   +L  +GF+ G+ D +        +++  R RK  +           L
Sbjct: 556  MSFFNGAQAVVNYWLLHNGFSIGIGDTIPDLETIQKIENAVRVRKEEVDSITASATENTL 615

Query: 841  EALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGL 900
            EAL   +  E      +S++ +A+    D A    +  +     K ++++V         
Sbjct: 616  EALPGMNVRET----FESKVSRALNNARDEAGTATEKSL-----KDSNNAV--------- 657

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
                       M  SG+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D++P
Sbjct: 658  ----------QMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSP 707

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
             + GF+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD 
Sbjct: 708  ESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDG 767

Query: 1021 SVRDADGSIVQFCYGEDGVD 1040
            +VR++ G IVQF YGEDG+D
Sbjct: 768  TVRNSLGDIVQFLYGEDGLD 787



 Score = 94.4 bits (233), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 62/82 (75%), Gaps = 1/82 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            N++A Q  L  ++ +F  + A PGE VG+LA+QS+GEP+TQMTLNTFH AG    NVTLG
Sbjct: 951  NKLAFQHVLGAIESRFGKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLG 1010

Query: 1180 IPRLQEILTIASKDIKTPVITC 1201
            +PRL+EIL +A+ +IKTP +T 
Sbjct: 1011 VPRLKEILNVAT-NIKTPSMTV 1031


>gi|322702047|gb|EFY93795.1| DNA-directed RNA polymerase III [Metarhizium acridum CQMa 102]
          Length = 1447

 Score =  321 bits (823), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 228/771 (29%), Positives = 366/771 (47%), Gaps = 123/771 (15%)

Query: 281  IFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
            +F    V  PP+  R      ++  E   T  L+ ++  +  + +A + +    + I+ +
Sbjct: 260  MFIWQFVPAPPVCIRPSVAQDNASNEDDLTTKLADIVWVSGMIRSA-LQKGSPIQTIMEQ 318

Query: 341  WMNLQQS----VNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            W  LQ      VN    G    G      G CQ L+ K+G FR  L GKRV+++ R+VIS
Sbjct: 319  WEYLQTQIAMYVNSDVPGLQQPGFGKSTRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVIS 378

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PDP L ++++ +P   A  LTYPE+V   N+ KLR  + NG ++ PGA   L K      
Sbjct: 379  PDPNLGIDQVAVPQLVAKNLTYPEKVNRQNIEKLRQCVRNGCDVWPGAQGILKKEDDSYY 438

Query: 457  PPNKKMRISIG-RKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
                K  +  G R L   + +             G +V RHL+DGDVVL NRQP+LHK S
Sbjct: 439  ----KFNLRFGNRDLAAKQLSY------------GDIVERHLEDGDVVLFNRQPSLHKLS 482

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            IM+H+ ++ +  +T R++   C+ YNADFDGDEMN+H PQ E +RAEA N++        
Sbjct: 483  IMSHLAKI-RPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAINLMGVKYNLAT 541

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF---CQLLYSSGVSSSGLGSFTGKPGQR 632
            P NG+P+ +  QD I +A LL+ KD F +R  F   C  +   G                
Sbjct: 542  PKNGEPIIAATQDFITAAFLLSSKDRFFDRKSFSYICMHMMEQG---------------- 585

Query: 633  VLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 692
                 ++ E+ P  PAI  P+ LWTGKQ+ + ++                  P      +
Sbjct: 586  -----TKIEIPP--PAIVAPKALWTGKQIFSIMMR-----------------PNKDCSVK 621

Query: 693  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL 752
             N D                          K    + +PG+  + + N        +  L
Sbjct: 622  INLD-------------------------AKCRAYKARPGQCPDMDPN--------DGWL 648

Query: 753  LIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTC 809
            ++  ++++ G +DK+         + + +   +G + A   ++ L++L    L   GF+ 
Sbjct: 649  VVRNSEVMCGRMDKSTVGSGKKDSIFYVILRDFGPDEAVIAMNRLAKLCARALTNRGFSI 708

Query: 810  GVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGD 869
            GV D+   +    E++N +  + ++   + +E  +     +     ++  +E ++ G   
Sbjct: 709  GVGDVFPTETLNVEKENLVSTAYKMCDDL-IETFKQGKLDKAPGCNMEQTLENSISG--- 764

Query: 870  AAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISS 929
                     + S++ +   S  I+ L        +  N   +M  SG+KGS +N  Q+ +
Sbjct: 765  ---------ILSKVRQQAGSYCIDTL--------SRNNAPLIMAQSGSKGSDINVAQMVA 807

Query: 930  HLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREG 989
             +GQQ + G+RVP     ++LP FH     P + GF+ + F TGL P E+ FH ++GREG
Sbjct: 808  VVGQQIIGGQRVPDGFQDRSLPHFHKNARQPPSKGFVKNSFYTGLFPTEFLFHAISGREG 867

Query: 990  LVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            LVDTAVKT+ +GY+ R L+K+LE L   YD +VR + G IVQF +G D +D
Sbjct: 868  LVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSGGGIVQFQFGADKLD 918



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 57/78 (73%), Gaps = 1/78 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            F+K+   K+  +  +PG  VG + +QS+GEP TQMTL TFH AG   M++T G+PR++EI
Sbjct: 1052 FIKMCLEKYKKAHVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEI 1111

Query: 1187 LTIASKDIKTPVITCPLL 1204
            +  ASK+I TPVITCPL+
Sbjct: 1112 IN-ASKNISTPVITCPLM 1128


>gi|300122988|emb|CBK23995.2| unnamed protein product [Blastocystis hominis]
          Length = 1828

 Score =  321 bits (822), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 241/826 (29%), Positives = 385/826 (46%), Gaps = 175/826 (21%)

Query: 244  PSDVKDIIEKLWENEFELCSFISDMQQQGFG-KKAGHSIFFLGVVLVPPIKFRLPSK--G 300
            PS VKD+  K+     E C F+      GF   +       L  + VPP+  R P    G
Sbjct: 191  PSSVKDLFRKI---SPEDCRFM------GFNYPEIKPEYMILSEIPVPPLAVRPPVMLPG 241

Query: 301  GDSVMEHPQTVLLSKVLQANI--------------------YLANAYVNQPDNAKVIVAR 340
              +  E   T  LS +L+AN                      L   Y N  DN +     
Sbjct: 242  STTPSEDDITYALSNILKANKAISGDRFRGKGRNGMDDDLEMLQTYYSNYCDNER----- 296

Query: 341  WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
              N+ Q++      KN   +R + +   Q ++ K G  R  LMGKRVN++ RSVI+ DP 
Sbjct: 297  -KNVPQAIQ-----KN---KRPLKT-FRQRIKGKTGRVRGNLMGKRVNFSGRSVITADPT 346

Query: 401  LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK 460
            + ++E+G+P   A  LT+PERVT +N+ +L + ++N  +  PGA + +D           
Sbjct: 347  IDIDEVGVPKSLAAILTFPERVTRYNIKEL-EKLVNQRDKWPGAKYIIDL---------- 395

Query: 461  KMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHV 520
                  GR+ D      +   K      EG +V RH+ +GD+VL NRQP+LHK SIM H 
Sbjct: 396  -----DGRRYDLRYTNGIPQLK------EGMIVERHINNGDIVLFNRQPSLHKMSIMGHR 444

Query: 521  VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGD 580
            VRVL    T R++ +  + YNADFDGDEMN+H PQ   +RAE   ++  +   + P +  
Sbjct: 445  VRVLN-YSTFRLNLSCTTPYNADFDGDEMNIHVPQTVQARAEVTELMMVHKNIISPKSNG 503

Query: 581  PLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQ 640
            P+  ++QD ++ +  LT++DTF+ +D    ++         +  F G      + +  + 
Sbjct: 504  PVMGIVQDTLLGSQKLTQRDTFVAKDMMMNMVM-------WVDDFDGNIPIPAVTAHKDG 556

Query: 641  EVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSD 700
            +++PL          WTGKQ+ + +L                  P+D    RF+      
Sbjct: 557  KLVPL----------WTGKQMYSLIL------------------PKDLNIQRFST----- 583

Query: 701  RKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLV 760
                                                 +KNK     + + ++LI + +L+
Sbjct: 584  -----------------------------------PYDKNKKVPLNMMDCEVLIEEGELL 608

Query: 761  RGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLIL 817
             G+IDK    +    G+ H +    G + A   L    R+   +L   GF+ G+ D++  
Sbjct: 609  MGIIDKNSIGNTKSGGITHVLMNDRGPDAAKAFLGLNQRMVNYWLMNRGFSVGLGDMVPT 668

Query: 818  KDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDM 877
             +   E  + +  ++                 ++  +  + + ++  +  G     YF+ 
Sbjct: 669  PETMNEVMDLIAKAKR----------------KVTSLIQQGQHKQLEKQPGKTIEQYFEW 712

Query: 878  KMTSQLN---KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
             + S+LN     T  +++  L S+        N +  M  +G+KG+ +N QQIS  +GQQ
Sbjct: 713  SVNSELNTMANQTQKTIMKHLKSD--------NSLQAMAVAGSKGAPLNLQQISGCVGQQ 764

Query: 935  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
             ++GKR+      +TLP F   D    A GF+++ +L GL PQE+YFH M GREG++DTA
Sbjct: 765  NVDGKRIAYGFMYRTLPHFCKDDLGADAHGFVVNSYLKGLTPQEFYFHAMGGREGIIDTA 824

Query: 995  VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            VKTS++GY+QR LIK++E L + YD +VR++ G IVQF YGEDG+D
Sbjct: 825  VKTSKTGYIQRRLIKSMEDLMVYYDGTVRNSRGQIVQFLYGEDGMD 870



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 22/146 (15%)

Query: 1072 SHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKL- 1130
            S ++V+ + ++M+ + C      SN   M  P++ +DNA+     F  + +A +  +K  
Sbjct: 991  SPSYVIVQVRDMLKRICV----ISNRVGM--PES-QDNAKLLFSIFARSMLASKPLMKEH 1043

Query: 1131 -------------VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVT 1177
                         ++++F+ +    GE  G++A+QS+GEP+TQMTLNTFH AG    NVT
Sbjct: 1044 RLTIKAFDWLIAEIENRFMKAQVAAGEVCGIVAAQSIGEPATQMTLNTFHFAGVSAKNVT 1103

Query: 1178 LGIPRLQEILTIASKDIKTPVITCPL 1203
            LG+PRL+EI+    K+I TP +T  L
Sbjct: 1104 LGVPRLEEIINCV-KEISTPTMTLKL 1128



 Score = 48.5 bits (114), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC +    CPGHFGHI L   +++    +++Y +L  ICF C
Sbjct: 73  CETCNRSYEDCPGHFGHIHLNAEIFHTGFLDIIYRVLTCICFNC 116


>gi|197723718|gb|ACH72769.1| RNA polymerase II largest subunit [Kabatana sp. JI-2008]
          Length = 909

 Score =  321 bits (822), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 238/816 (29%), Positives = 372/816 (45%), Gaps = 150/816 (18%)

Query: 367  ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
            I   L+ KEG  R  LMGKRV+++ RSVI+PD  +++ E+G+P   A+  T+PE V  +N
Sbjct: 213  ISARLKGKEGRVRGNLMGKRVDFSARSVITPDSNISICELGVPKRIAMIHTFPETVNSFN 272

Query: 427  VVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN 486
            V K+   + +G   +PGA +Y+ +    R+       +SI                    
Sbjct: 273  VEKMEQLVKSGPFEYPGA-NYVVREDGQRVDLRYNRNVSIK------------------- 312

Query: 487  EFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDG 546
              EG +V RH+ DGD VL NRQP+LHK S+MAH VRV+    T R++ +  + YNADFDG
Sbjct: 313  --EGCVVERHMADGDTVLFNRQPSLHKMSMMAHRVRVMD-RLTFRLNLSATTPYNADFDG 369

Query: 547  DEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRD 606
            DEMN+H PQ   + AE   +     Q V P    P+  L+QD ++    LT +D+F N  
Sbjct: 370  DEMNLHMPQSYQTMAELKELAFLPTQIVSPQGNKPVMGLVQDTLIGVRRLTSRDSFFNEQ 429

Query: 607  EFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL 666
            E   L++                          Q V  L P I +P  L++GKQ+ +  L
Sbjct: 430  EVMALMFKC------------------------QNVKKLKPVIKRPLRLYSGKQLFSLNL 465

Query: 667  NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEV 726
              I                 +F     + D     +K D   L   +K       K++E+
Sbjct: 466  PEI-----------------NFHGVTNDPDFGDSIEKLDGWNLGSESK------SKQQEM 502

Query: 727  VEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGS 784
                           S  K + + K++I +  L+ G +DK    +   G++H ++  +G 
Sbjct: 503  Y--------------SLHKRILDSKVVIRRGQLLLGAMDKKSVGNTQGGIIHVIKNDHGC 548

Query: 785  NTAGTLLSALSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL 843
             +         RL   +L  +  F+CG+ D +      R+  + + G+++          
Sbjct: 549  ESVVNFFDGTQRLVNAYLTFYSSFSCGIGDTIADSYTMRKIVSSIEGAKK---------- 598

Query: 844  ELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKP 903
                  E+  I   +   +  R  G    + F+ K+   LN+  +  V      E L   
Sbjct: 599  ------EVGEIIESARQGRLERVAGLTMKSTFESKINLALNR--ARDVSGRSAQESL--- 647

Query: 904  TGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAG 963
               N +  M  +G+KGS +N  Q+++ +GQQ +EG+R+P     +TLP F  +D+ P + 
Sbjct: 648  AVSNNVKQMVLAGSKGSFINISQVTACVGQQNVEGQRIPFAFRDRTLPHFSKFDYGPESR 707

Query: 964  GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
            GF+ + FL+GL P+E+YFH M GREGL+DTA+KT+ +GY+QR L+K +E  ++SYD SVR
Sbjct: 708  GFVENSFLSGLTPEEFYFHTMGGREGLIDTAIKTAETGYIQRRLVKAMEDCRVSYDGSVR 767

Query: 1024 DADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEM 1083
            D  G   QF YG DG D    +F+                 + F D    T  +   + +
Sbjct: 768  DGSGRAYQFLYGGDGFD---ATFLE----------------HNFLDDRRVTLPLNF-ERI 807

Query: 1084 IYKKCSGQLDASNAY-----IMELPDALK-------DNAEKFADK---FLSNEMAK---- 1124
            I+    G   A  A      ++E  +++K             AD    F+S +  K    
Sbjct: 808  IFNAERGSSSAQRATEAREELLEFLNSIKFLSCPKFSAGSTLADAINFFISXKYLKNVSX 867

Query: 1125 ---QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEP 1157
               ++    VK K    +    E VG LASQS+GEP
Sbjct: 868  TGIREITDEVKKKISRGIVAFNEMVGTLASQSIGEP 903


>gi|403365508|gb|EJY82539.1| hypothetical protein OXYTRI_19848 [Oxytricha trifallax]
          Length = 1782

 Score =  321 bits (822), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 244/811 (30%), Positives = 376/811 (46%), Gaps = 145/811 (17%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAG--HSIFFLGVVLVPPIKFRLPSK 299
            L P +   + E++ E   E C+ +      GF  K     ++    + + PP      S 
Sbjct: 186  LQPDEAHKVFERIDE---ESCTLM------GFQPKISRPENMIIKNLAVAPPPVRPSVSM 236

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDG----- 354
            G     E   T    K+LQ NI L    + +  N   I     +LQ  V  + D      
Sbjct: 237  GNTMRSEDDLTYCYIKILQTNIALQTQ-IQKGANLTTINVLRDSLQYYVATVMDNEIQGQ 295

Query: 355  ---KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
               K+ +G+   A  I   L  KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P  
Sbjct: 296  PTQKHKSGKPLKA--IRSRLRGKEGRLRGNLMGKRVDFSARTVITPDPILRLDQLGVPQQ 353

Query: 412  FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLD 471
             AL LT PE VT  N+ ++R  + NG    PGA + +                   R++D
Sbjct: 354  IALNLTVPETVTAENIDEMRYLVQNGPTQWPGAKYIIRHDE---------------RQID 398

Query: 472  TSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTL 530
             S     Q    SD   E G  V RHL++ D V+ NRQP+LHK S+M H V+VL    T 
Sbjct: 399  LS-----QLKNRSDLHIEPGFKVERHLRNDDYVIFNRQPSLHKMSLMGHRVKVLPFS-TF 452

Query: 531  RMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHI 590
            R++ +  + YNADFDGDEMN+H PQ   + AE   I+   NQ V P +  P+  ++QD +
Sbjct: 453  RLNLSVTTPYNADFDGDEMNMHVPQSYETMAEVKEIMAVPNQIVSPQSNKPVMGIVQDSL 512

Query: 591  VSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIW 650
            +   L T KDTF+ ++   QLL                    + I+  + ++ P  PAI 
Sbjct: 513  LGVMLFTLKDTFIEKELVMQLL--------------------MWINYEDDKLPP--PAIL 550

Query: 651  KPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLS 710
            KP+PLWTGKQ+ + ++  I                        N  K  +R+        
Sbjct: 551  KPKPLWTGKQIFSLIIPDI------------------------NIQKVGERQ-------- 578

Query: 711  KTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFA 770
                    K G+ K ++    G                +  +L+ K +L+ G + K+   
Sbjct: 579  --------KKGEPKNLIWDSAG----------------DNNILMRKGELLCGNLTKSTIG 614

Query: 771  DY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHL 828
                G++H + +  G       +S    +   +L  HGFT GV D++  K          
Sbjct: 615  SSSGGMIHVIWKEKGPYVTRDFMSNTQLVINNWLHQHGFTVGVQDIIAKK---------- 664

Query: 829  HGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTS 888
                EI +++    +  +   ++  I  K+++ K     G   +  F+  +   LNK   
Sbjct: 665  ----EIVQKIRESMVIFK--KKVQQITQKAQMGKLKTQPGKGMMDSFEASVNQCLNKAR- 717

Query: 889  SSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGK 948
                ++  +  L      N +  M  +G+KGS +N  QI + +GQQ +EGKR+P     +
Sbjct: 718  ----DDCGNMALADLQSWNRLKAMVYAGSKGSNLNISQIMACVGQQNVEGKRIPFGFHRR 773

Query: 949  TLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1008
            +LP F   D+ P + GF+ + +L GL PQE++FH M GREGL+DTAVKT+ +GY+QR LI
Sbjct: 774  SLPHFSKDDYGPESKGFVENCYLNGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLI 833

Query: 1009 KNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            K LE + + YD +VR +   I+QF YGEDG+
Sbjct: 834  KALEDVMVKYDGTVRTSKEQIIQFLYGEDGM 864



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 58/79 (73%), Gaps = 4/79 (5%)

Query: 1122 MAKQDF---LKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTL 1178
            ++K+ F   L  +K +F  +L  PGE VG + +QS+GEP+TQMTLNTFH AG    NVTL
Sbjct: 1042 LSKESFDWILGEIKSRFEQALVNPGEMVGSIGAQSMGEPATQMTLNTFHFAGVSAKNVTL 1101

Query: 1179 GIPRLQEILTIASKDIKTP 1197
            G+PRL+EI+ +A K+IKTP
Sbjct: 1102 GVPRLKEIINVA-KNIKTP 1119



 Score = 60.5 bits (145), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVR 59
           C TC   Q  CPGHFGHI+L  PVY+  L   +  +L+ +CF+C    A + ++E+  R
Sbjct: 71  CFTCKGSQADCPGHFGHIELAKPVYHAGLLEFIRKVLRCVCFYCSKLLAEKEKLEELRR 129


>gi|327294163|ref|XP_003231777.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
            CBS 118892]
 gi|326465722|gb|EGD91175.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
            CBS 118892]
          Length = 1744

 Score =  320 bits (821), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 217/680 (31%), Positives = 329/680 (48%), Gaps = 138/680 (20%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  RQ LMGKRV+++ R+VI+ DP L+++E+G+P   A  LTYPE VTP+N+ +L
Sbjct: 345  LKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRL 404

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE- 489
               + NG ++HPGA + +                S G ++D         G    N  + 
Sbjct: 405  GQLVDNGPDVHPGARYVIR---------------SSGERIDLRH----HKGGGGRNFLQW 445

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G  V RHL DGD +L NRQP+LHK S+M+H VRV+    T R++ +  + YNADFDGDEM
Sbjct: 446  GWKVERHLMDGDFILFNRQPSLHKESMMSHRVRVMP-YSTFRLNLSVTTPYNADFDGDEM 504

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ E +RAE   +       V P    PL  ++QD +     + ++D FL +++  
Sbjct: 505  NLHVPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVM 564

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
             +L                     L       VLP  PAI KP P W+GKQ+I+ V    
Sbjct: 565  NVL---------------------LWVPDWDGVLPQ-PAILKPRPRWSGKQMISMV---- 598

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
                          LP      R + DK                                
Sbjct: 599  --------------LPSGLNLLRIDKDK-------------------------------- 612

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTA 787
             P  EK +         L++  +L++  +L+ G+  K      G  +VHT+   YG + A
Sbjct: 613  SPISEKFSP--------LADGGVLVHGGELMYGMFSKKTVGASGGGIVHTIFNEYGPDAA 664

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLI-------LKDKERERKNHLHGSEEIGKRVHL 840
             +  +    +   +L  +GF+ G+ D +        +++  R RK  +           L
Sbjct: 665  MSFFNGAQAVVNYWLLHNGFSIGIGDTIPDLETIQKIENAVRVRKEEVDSITASATENTL 724

Query: 841  EALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGL 900
            EAL   +  E      +S++ +A+    D A    +  +     K ++++V         
Sbjct: 725  EALPGMNVRET----FESKVSRALNNARDEAGTATEKSL-----KDSNNAV--------- 766

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
                       M  SG+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D++P
Sbjct: 767  ----------QMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSP 816

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
             + GF+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD 
Sbjct: 817  ESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDG 876

Query: 1021 SVRDADGSIVQFCYGEDGVD 1040
            +VR++ G IVQF YGEDG+D
Sbjct: 877  TVRNSLGDIVQFLYGEDGLD 896



 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 62/82 (75%), Gaps = 1/82 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            N++A Q  L  ++ +F  + A PGE VG+LA+QS+GEP+TQMTLNTFH AG    NVTLG
Sbjct: 1060 NKLAFQHVLGAIESRFGKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLG 1119

Query: 1180 IPRLQEILTIASKDIKTPVITC 1201
            +PRL+EIL +A+ +IKTP +T 
Sbjct: 1120 VPRLKEILNVAT-NIKTPSMTV 1140



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 3/112 (2%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFK--ASRREVEKCV 58
           C TC +    CPGHFGHI+L  PV++      +  LL+ +C  C   K  AS ++    +
Sbjct: 69  CATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQKYLDAL 128

Query: 59  RKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVR 110
           R  +   + D I   S D+ L  E+  PE+ D   K S   V   G   NV+
Sbjct: 129 RFRDPKKRFDAIWRLSKDI-LICEADPPEEDDPFAKESSKPVQGHGGCGNVQ 179


>gi|3169691|gb|AAC17924.1| RNA polymerase II largest subunit, partial [Pyropia yezoensis]
          Length = 1685

 Score =  320 bits (821), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 218/676 (32%), Positives = 334/676 (49%), Gaps = 124/676 (18%)

Query: 367  ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
            I Q L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  LT+PE VT +N
Sbjct: 251  ISQRLKGKEGRLRGNLMGKRVDFSARTVITPDPNLRLDQVGVPFSIAKNLTFPETVTAYN 310

Query: 427  VVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN 486
            + +++  + NG + +P A               K ++   G +++    A V+   D   
Sbjct: 311  IEEMQQLVENGPDEYPDA---------------KYIQRDDGYQVNL---AYVRNRADVQL 352

Query: 487  EFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDG 546
            E  G  V RH+ +GD ++ NRQP+LHK SIM H ++V+    T R++ +  S YNADFDG
Sbjct: 353  EI-GYKVVRHITNGDFIVFNRQPSLHKMSIMGHRIKVMP-YSTFRLNLSVTSPYNADFDG 410

Query: 547  DEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRD 606
            DEMN+H PQ   +RAE   ++      V P    P+  ++QD ++   L T +DTFL RD
Sbjct: 411  DEMNLHVPQTHATRAEVMELMMVPRCIVSPQGNKPVMGIVQDTLLGCMLFTYRDTFLRRD 470

Query: 607  EFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL 666
                      V+ S L    G  G           V+P  PAI KPEPLWTGKQ+ + +L
Sbjct: 471  ----------VTMSLLLHVEGWDG-----------VIPP-PAIIKPEPLWTGKQLFSLLL 508

Query: 667  NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEV 726
              +                                       L +    H D      E 
Sbjct: 509  PDV--------------------------------------NLVRYCNTHPD-----DES 525

Query: 727  VEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGS 784
             +  PG+ +                +LI   +L+ G++DK     A  GL+H   +  G 
Sbjct: 526  TDISPGDTR----------------VLIVGGELITGIVDKRTVGSAANGLIHVTWKEKGP 569

Query: 785  NTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALE 844
                 L+SA+  L   ++ M G + G+ D +     +   +  + G++        E  +
Sbjct: 570  ERTCVLISAIQVLVNHYVIMRGQSIGIGDTIADAHTDANVRATITGAQA-------EVTQ 622

Query: 845  LEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPT 904
            LE  A+   + L           G + +  F++++   LN    +S  +  LS  LLK  
Sbjct: 623  LERRAQEGELTLLP---------GKSMMESFEVEVNKVLNGARDTSGSSAQLS--LLK-- 669

Query: 905  GKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGG 964
              N I  M ++G+KGS +N  QI + +GQQ +EGKR+      +TLP F   D  P + G
Sbjct: 670  -SNNIKRMVSAGSKGSFINISQICACVGQQNVEGKRISYGFRRRTLPHFRMDDLGPESRG 728

Query: 965  FIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD 1024
            F+ + +L GLRP E++FH M GREGL+DTAVKT+ +GY+QR L+K +E + + YD +VR+
Sbjct: 729  FVENSYLIGLRPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAMEDVMVKYDGTVRN 788

Query: 1025 ADGSIVQFCYGEDGVD 1040
            +  S++QF YGEDG+D
Sbjct: 789  SRSSVIQFLYGEDGLD 804



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 53/73 (72%), Gaps = 1/73 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++++F  +LA  GE VG  A+QS+GEP+TQMTLNTFH AG    NVTLG+PRLQEI+ + 
Sbjct: 1011 IENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINV- 1069

Query: 1191 SKDIKTPVITCPL 1203
            SK  KTP +   L
Sbjct: 1070 SKRTKTPSLVVYL 1082



 Score = 44.3 bits (103), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 6/58 (10%)

Query: 11 CPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASR------REVEKCVRKLE 62
          CPGHFG I+L  P+++     +   LL+ +C+FC     ++      +++ K V K+E
Sbjct: 2  CPGHFGFIELAKPMFHAGFMGMTLKLLRCVCYFCSRLLITKVDDPGVQKILKAVSKME 59


>gi|302662921|ref|XP_003023110.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
 gi|291187089|gb|EFE42492.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
          Length = 1744

 Score =  320 bits (820), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 217/680 (31%), Positives = 329/680 (48%), Gaps = 138/680 (20%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  RQ LMGKRV+++ R+VI+ DP L+++E+G+P   A  LTYPE VTP+N+ +L
Sbjct: 345  LKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRL 404

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE- 489
               + NG ++HPGA + +                S G ++D         G    N  + 
Sbjct: 405  GQLVDNGPDVHPGARYVIR---------------SSGERIDLRH----HKGGGGRNFLQW 445

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G  V RHL DGD +L NRQP+LHK S+M+H VRV+    T R++ +  + YNADFDGDEM
Sbjct: 446  GWKVERHLMDGDFILFNRQPSLHKESMMSHRVRVMP-YSTFRLNLSVTTPYNADFDGDEM 504

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ E +RAE   +       V P    PL  ++QD +     + ++D FL +++  
Sbjct: 505  NLHVPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVM 564

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
             +L                     L       VLP  PAI KP P W+GKQ+I+ V    
Sbjct: 565  NVL---------------------LWVPDWDGVLPQ-PAILKPRPRWSGKQMISMV---- 598

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
                          LP      R + DK                                
Sbjct: 599  --------------LPSGLNLLRIDKDK-------------------------------- 612

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTA 787
             P  EK +         L++  +L++  +L+ G+  K      G  +VHT+   YG + A
Sbjct: 613  SPISEKFSP--------LADGGVLVHGGELMYGMFSKKTVGASGGGVVHTIFNEYGPDAA 664

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLI-------LKDKERERKNHLHGSEEIGKRVHL 840
             +  +    +   +L  +GF+ G+ D +        +++  R RK  +           L
Sbjct: 665  MSFFNGAQAVVNYWLLHNGFSIGIGDTIPDLETIQKIENAVRVRKEEVDSITASATENTL 724

Query: 841  EALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGL 900
            EAL   +  E      +S++ +A+    D A    +  +     K ++++V         
Sbjct: 725  EALPGMNVRET----FESKVSRALNNARDEAGTATEKSL-----KDSNNAV--------- 766

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
                       M  SG+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D++P
Sbjct: 767  ----------QMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSP 816

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
             + GF+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD 
Sbjct: 817  ESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDG 876

Query: 1021 SVRDADGSIVQFCYGEDGVD 1040
            +VR++ G IVQF YGEDG+D
Sbjct: 877  TVRNSLGDIVQFLYGEDGLD 896



 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 62/82 (75%), Gaps = 1/82 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            N++A Q  L  ++ +F  + A PGE VG+LA+QS+GEP+TQMTLNTFH AG    NVTLG
Sbjct: 1060 NKLAFQHVLGAIESRFGKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLG 1119

Query: 1180 IPRLQEILTIASKDIKTPVITC 1201
            +PRL+EIL +A+ +IKTP +T 
Sbjct: 1120 VPRLKEILNVAT-NIKTPSMTV 1140



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 3/112 (2%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFK--ASRREVEKCV 58
           C TC +    CPGHFGHI+L  PV++      +  LL+ +C  C   K  AS ++    +
Sbjct: 69  CATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQKYLDAL 128

Query: 59  RKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVR 110
           R  +   + D I   S D+ L  E+  PE+ D   K S   V   G   NV+
Sbjct: 129 RFRDPKKRFDAIWRLSKDI-LICEADPPEEDDPFAKESSKPVQGHGGCGNVQ 179


>gi|120561199|gb|ABM26985.1| RNA polymerase II largest subunit, partial [Trichophyton rubrum]
          Length = 1015

 Score =  320 bits (820), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 222/673 (32%), Positives = 327/673 (48%), Gaps = 124/673 (18%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  RQ LMGKRV+++ R+VI+ DP L+++E+G+P   A  LTYPE VTP+N+ +L
Sbjct: 261  LKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRL 320

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE- 489
               + NG ++HPGA + +                S G ++D         G    N  + 
Sbjct: 321  GQLVDNGPDVHPGARYVIR---------------SSGERIDLRH----HKGGGGRNFLQW 361

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G  V RHL DGD +L NRQP+LHK S+M+H VRV+    T R++ +  + YNADFDGDEM
Sbjct: 362  GWKVERHLMDGDFILFNRQPSLHKESMMSHRVRVMP-YSTFRLNLSVTTPYNADFDGDEM 420

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ E +RAE   +       V P    PL  ++QD +     + ++D FL +++  
Sbjct: 421  NLHVPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVM 480

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
             +L                     L       VLP  PAI KP P W+GKQ+I+ V    
Sbjct: 481  NVL---------------------LWVPDWDGVLPQ-PAILKPRPRWSGKQMISMV---- 514

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
                          LP      R + DK                                
Sbjct: 515  --------------LPSGLNLLRIDKDK-------------------------------- 528

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTA 787
             P  EK +         L++  +L++  +L+ G+  K      G  +VHT+   YG + A
Sbjct: 529  SPISEKFSP--------LADGGVLVHGGELMYGMFSKKTVGASGGGIVHTIFNEYGPDAA 580

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED 847
             +  +    +   +L  +GF+ G+ D   + D E  +K       E   RV  E      
Sbjct: 581  MSFFNGAQAVVNYWLLHNGFSIGIGD--TIPDLETIQKI------ENAVRVRKE------ 626

Query: 848  GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKN 907
              E+D I   +         G      F+ K++  LN     +      +E  LK +  N
Sbjct: 627  --EVDSITASATENTLEALPGMNVRETFESKVSRALNNARDEA---GTATEKSLKDS--N 679

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
                M  SG+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D++P + GF+ 
Sbjct: 680  NAVQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVE 739

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
            + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD +VR++ G
Sbjct: 740  NSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLG 799

Query: 1028 SIVQFCYGEDGVD 1040
             IVQF YGEDG+D
Sbjct: 800  DIVQFLYGEDGLD 812



 Score = 42.0 bits (97), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 29/40 (72%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPST 1159
            N++A Q  L  ++ +F  + A PGE VG+LA+QS+GEP+T
Sbjct: 976  NKLAFQHVLGAIESRFGKAAANPGEMVGVLAAQSIGEPAT 1015


>gi|296822712|ref|XP_002850330.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
            113480]
 gi|238837884|gb|EEQ27546.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
            113480]
          Length = 1748

 Score =  320 bits (820), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 219/680 (32%), Positives = 332/680 (48%), Gaps = 138/680 (20%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  RQ LMGKRV+++ R+VI+ DP L+++E+G+P   A  LTYPE VTP+N+ +L
Sbjct: 345  LKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRL 404

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE- 489
               + NG ++HPGA + +                S G ++D         G    N  + 
Sbjct: 405  GQLVDNGPDVHPGARYVIR---------------SSGERIDLRH----HKGGGGRNFLQW 445

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G  V RHL DGD +L NRQP+LHK S+M+H VRV+    T R++ +  + YNADFDGDEM
Sbjct: 446  GWKVERHLMDGDFILFNRQPSLHKESMMSHRVRVMP-YSTFRLNLSVTTPYNADFDGDEM 504

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ E +RAE   +       V P    PL  ++QD +     + ++D FL +++  
Sbjct: 505  NLHVPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVM 564

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
             +L                     L       VLP  PAI KP P W+GKQ+I+ VL   
Sbjct: 565  NIL---------------------LWVPDWDGVLP-QPAILKPRPRWSGKQMISMVL--- 599

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
                PP +                                    ++ KDKS         
Sbjct: 600  ----PPGL---------------------------------NLLRIDKDKS--------- 613

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTA 787
             P  EK +         L++  +L++  +L+ G+  K        G+VHT+   YG   A
Sbjct: 614  -PISEKFS--------PLADGGVLVHGGELMYGMFSKKTVGASGGGVVHTIFNEYGPEVA 664

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLI-------LKDKERERKNHLHGSEEIGKRVHL 840
             +  +    +   +L  +GF+ G+ D +        +++  R RK  +           L
Sbjct: 665  MSFFNGAQTVVNYWLLHNGFSIGIGDTIPDLATIQKIENAVRVRKEEVDTITASATENTL 724

Query: 841  EALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGL 900
            EAL   +  E      +S++ +A+    D A    +  +     K ++++V         
Sbjct: 725  EALPGMNVRET----FESKVSRALNNARDEAGTATEKSL-----KDSNNAV--------- 766

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
                       M  SG+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D++P
Sbjct: 767  ----------QMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSP 816

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
             + GF+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD 
Sbjct: 817  ESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDG 876

Query: 1021 SVRDADGSIVQFCYGEDGVD 1040
            +VR++ G IVQF YGEDG+D
Sbjct: 877  TVRNSLGDIVQFLYGEDGLD 896



 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 62/82 (75%), Gaps = 1/82 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            N++A Q  L  ++ +F  + A PGE VG+LA+QS+GEP+TQMTLNTFH AG    NVTLG
Sbjct: 1060 NKLAFQHVLGAIESRFGKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLG 1119

Query: 1180 IPRLQEILTIASKDIKTPVITC 1201
            +PRL+EIL +A+ +IKTP +T 
Sbjct: 1120 VPRLKEILNVAT-NIKTPSMTV 1140



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 3/112 (2%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFK--ASRREVEKCV 58
           C TC +    CPGHFGHI+L  PV++      +  LL+ +C  C   K  AS ++    +
Sbjct: 69  CATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQKYLDAL 128

Query: 59  RKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVR 110
           R  +   + D I   S D+ L  E+  PE+ D   K S   V   G   NV+
Sbjct: 129 RFRDPKKRFDAIWRLSKDI-LICEADPPEEDDPFAKESSKPVQGHGGCGNVQ 179


>gi|120561223|gb|ABM26997.1| RNA polymerase II largest subunit, partial [Gigaspora gigantea]
          Length = 1039

 Score =  320 bits (819), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 215/674 (31%), Positives = 331/674 (49%), Gaps = 125/674 (18%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VI+ DP ++V+++G+P   A  LT+PE VTP+N+  L
Sbjct: 273  LKGKEGRLRGNLMGKRVDFSARTVITGDPNISVDQVGVPKSIAQNLTFPELVTPFNIDLL 332

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
            +  + NG  +HPGA + +              RI +      S G  +Q G         
Sbjct: 333  QGLVENGPSVHPGAKYVIRDTGE---------RIDLKHTSGMSGGVRLQLGWK------- 376

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RHL DGD+++ NRQP+LHK S+M H VRV+    T R++ +  + YNADFDGDEMN
Sbjct: 377  --VERHLNDGDIIIFNRQPSLHKMSMMGHRVRVMP-YSTFRLNLSVTTPYNADFDGDEMN 433

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ   ++AE   I     Q V P +  P+  ++QD + +    TK+D FL +D    
Sbjct: 434  MHVPQSVETKAEISEICMVPKQVVSPQSNKPVMGIVQDTLCAVRKFTKRDCFLTKDLVMN 493

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            +L         +  + G+              LP +P I KP PLWTGKQ+++ +   I 
Sbjct: 494  ILM-------WVLDWDGR--------------LP-IPCILKPIPLWTGKQILSMI---IP 528

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNAD--KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
            +G                     N+D  + S   +N+   +S                  
Sbjct: 529  KG--------------------INSDNLRHSGHPENEHSDIS------------------ 550

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFA--DYGLVHTVQELYGSNT 786
              PG+ K                +LI   +L+ G++ K        GLVH +    G   
Sbjct: 551  --PGDTK----------------VLIEDGELLCGIVCKKTVGATHQGLVHVIMNEMGPEK 592

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE 846
            A   L+    +   +L  +GF+ G+ D +   +  +   N +  ++     +  EA   +
Sbjct: 593  AKDFLNGCQAVVNQWLLQNGFSIGIGDTIADDETMKNITNTISNAKSRVAEIIGEA--QQ 650

Query: 847  DGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
            D  E  P              G      F+ K+  +LN  T+     +   + L +   +
Sbjct: 651  DKLECAP--------------GMTIRETFEHKVNKELN--TARDAAGKSAEQSLKE---E 691

Query: 907  NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
            N +  M  +G+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D +P + GF+
Sbjct: 692  NNVKQMVIAGSKGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHSPESRGFV 751

Query: 967  IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
             + +L GL PQE++FH M GREGL+DTAVKT+ +GY+QR L+K LE + + YD +VR++ 
Sbjct: 752  ENCYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSL 811

Query: 1027 GSIVQFCYGEDGVD 1040
            G IVQFCYGEDG+D
Sbjct: 812  GDIVQFCYGEDGMD 825


>gi|301628367|ref|XP_002943327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like, partial
            [Xenopus (Silurana) tropicalis]
          Length = 1946

 Score =  319 bits (818), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 241/817 (29%), Positives = 376/817 (46%), Gaps = 155/817 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     FI  M      + A      + V+ VPP+  R P+   
Sbjct: 192  LSPERVHEIFKRITDEE----CFILGMDP----RFARPEWLIVTVLPVPPLSVR-PAVVM 242

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 243  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 301

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 302  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 361

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+PE VTP+N+ +L++ +  G   +PGA + +    D++     P    + + IG K
Sbjct: 362  ANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYK 421

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 422  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 457

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 458  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 517

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 518  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 555

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 556  LKPRPLWTGKQIFSLIVPGHI--------------------------------------N 577

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 578  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVIVENGELIMGILCK 618

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +T     S +  +   +L + G T G+ D +      ++ 
Sbjct: 619  KSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDI 678

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 679  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 722

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 723  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 775

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 776  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 835

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+
Sbjct: 836  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGL 872



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 64/95 (67%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + +  ++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1027 SRRMVEEFRLSGEAFDWLLGEIESKFNQAVAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1086

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1087 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1120



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1  CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
          C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 47 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 90


>gi|330833901|ref|YP_004408629.1| DNA-directed RNA polymerase subunit A' [Metallosphaera cuprina Ar-4]
 gi|329566040|gb|AEB94145.1| DNA-directed RNA polymerase subunit A' [Metallosphaera cuprina Ar-4]
          Length = 886

 Score =  319 bits (818), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 253/847 (29%), Positives = 389/847 (45%), Gaps = 165/847 (19%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
            L P D+++ +E + +++ EL  +   + +  +          L V+ VPPI  R PS   
Sbjct: 181  LTPLDIRERLENIPDSDVELLGYDPTVSRPEW--------IILTVLPVPPITIR-PSIMI 231

Query: 302  DSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD------ 353
            +S +  E   T  L  +++ N  L  + ++      ++   W  LQ  V   FD      
Sbjct: 232  ESGIRAEDDLTHKLVDIVRINERLKES-IDAGAPQLIVEDLWDLLQYHVATYFDNEIPGL 290

Query: 354  --GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
               K+ +G+      + Q L+ KEG FR  L GKRV+++ R+VISPDP ++++E+G+P  
Sbjct: 291  PTSKHRSGR--PLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNISIDEVGVPYD 348

Query: 412  FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLD 471
             A+ LT PE+VT WN+ ++R+ +ING +  PGA + +                S GR++D
Sbjct: 349  VAMILTVPEKVTKWNIERMREYVINGPDKWPGANYVVR---------------SDGRRID 393

Query: 472  TSRGAIVQPGKDSDNEFEGK-MVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTL 530
                  V+  K+         +V RHL DGD+V+ NRQP+LH+ S+M H VRVL G +T 
Sbjct: 394  LR---YVKDRKELAATLAPNFIVERHLVDGDIVIFNRQPSLHRISMMGHRVRVLPG-RTF 449

Query: 531  RMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHI 590
            R++   C  YNADFDGDEMN+H PQ E + AE   ++  +   + P  G P+    QD+I
Sbjct: 450  RLNLLVCPPYNADFDGDEMNLHVPQSEEAIAETKELMTVHRNILTPRYGGPIIGSAQDYI 509

Query: 591  VSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIW 650
              A LLT K T L+ DE   +L        G+       G+               PAI 
Sbjct: 510  SGAYLLTVKTTLLSEDEVQTIL--------GVADINKDLGE---------------PAIL 546

Query: 651  KPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLS 710
             P+ L+TGKQ    +++H               LP++F               N  G   
Sbjct: 547  APKRLYTGKQ----IVSHF--------------LPEEF---------------NFHG--- 570

Query: 711  KTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFA 770
                                P       ++   E    +  ++I +  L+ GV DK    
Sbjct: 571  --------------------PANISSGVRSCKDEDCPHDSYVVIKRGKLLEGVFDKKALG 610

Query: 771  DY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKD-------- 819
            +     ++H +   Y  +    L+  L ++F  ++++HG T  + D+ I +D        
Sbjct: 611  NQQAESILHWLVREYDEDYVLWLMDNLFKVFLRYIELHGLTMTLSDVTIPEDATKKISEK 670

Query: 820  --KERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDM 877
              + RER N L    + G+   +    LE+  E     +   ++K     G+ A  + D 
Sbjct: 671  AREARERVNDLIARYKKGELEVIPGRTLEESLES---YILDTLDKLRNEAGEIATMHLD- 726

Query: 878  KMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELE 937
                                     P    +I  M  +GA+GS +N  Q+++ LGQQ + 
Sbjct: 727  -------------------------PFNNAYI--MARTGARGSVLNITQMAAMLGQQSVR 759

Query: 938  GKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKT 997
            G+R+ R  S +TLP F P D +P A GFI   F +GL P E +FH   GREGLVDTAV+T
Sbjct: 760  GERIKRGYSTRTLPHFKPNDISPEARGFIYSSFRSGLNPIETFFHAAGGREGLVDTAVRT 819

Query: 998  SRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARE 1057
            S+SGY+QR LI  L  L+I YD +VR   G ++Q  YG DGV   +++     D     E
Sbjct: 820  SQSGYMQRRLINALSDLRIEYDGTVRTLYGEVIQTLYGGDGVHPMRSAHGKTIDVDRILE 879

Query: 1058 RGRGRGR 1064
            R  G  R
Sbjct: 880  RVIGWKR 886



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 38/75 (50%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C  CG     CPGHFGHI+LV PV +      +Y LL+  C  C   K +  +++K  + 
Sbjct: 64  CPVCGNVIGSCPGHFGHIELVRPVIHVGFVKHVYDLLRSTCKRCGRIKINEEDIQKYKKI 123

Query: 61  LELIIKGDIIAAKSL 75
            + I K    AAK L
Sbjct: 124 HDAIKKRWPSAAKRL 138


>gi|400603032|gb|EJP70630.1| RNA polymerase Rpb1 [Beauveria bassiana ARSEF 2860]
          Length = 1759

 Score =  319 bits (818), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 221/673 (32%), Positives = 327/673 (48%), Gaps = 129/673 (19%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VI+ D  L+++E+G+P   A  LTYPE VTP+N+ KL
Sbjct: 343  LKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIAKL 402

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
               + NG   HPGA + +    T         RI +      ++ ++         E+ G
Sbjct: 403  HQLVENGPNEHPGAKYVIRSDGT---------RIDLRHHRRAAQISL---------EY-G 443

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RHL DGD ++ NRQP+LHK S+M H V+V+    T R++ +  S YNADFDGDEMN
Sbjct: 444  WKVERHLIDGDYIIFNRQPSLHKESMMGHRVKVMP-YSTFRLNLSVTSPYNADFDGDEMN 502

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E +RAE   +    N  V P    PL  ++QD +     L ++DTF+++ E  Q
Sbjct: 503  LHVPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDK-ELVQ 561

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
             L                    +L   +   V+P  PAI KP P WTGKQ+I+ V+    
Sbjct: 562  NL--------------------MLWVPNWDGVIP-QPAILKPRPRWTGKQIISMVI---- 596

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
               PP +             + ++ + + D  ++D G                       
Sbjct: 597  ---PPEI-------------SLYSKEDKLDNPRHDAG----------------------- 617

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAG 788
                                 LLI   +L+ G++ K     A  G++H      G   A 
Sbjct: 618  ---------------------LLIQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAM 656

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
              L+ + ++ T +L   GF+ G+ D   + DK    K   H  E   +   L A    + 
Sbjct: 657  AFLNGVQQVVTYWLLNTGFSIGIGD--TVPDKATINKIQEHIDEHKAEVARLTAQATANE 714

Query: 849  AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNW 908
             E  P              G    A F+ K++  LN     +  + + S   LK +  N 
Sbjct: 715  LEALP--------------GMNVRATFENKVSMALNMARDQAGTSTMKS---LKDS--NN 755

Query: 909  ISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIID 968
               M  SG+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D++P A GF+ +
Sbjct: 756  AVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVEN 815

Query: 969  RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGS 1028
             +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE L   YD +VR++ G 
Sbjct: 816  SYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD 875

Query: 1029 IVQFCYGEDGVDV 1041
            ++QF YGEDG+D 
Sbjct: 876  VIQFLYGEDGLDA 888



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 61/84 (72%), Gaps = 1/84 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            N++A    +  +++++  +   PGE VG+LA+QS+GEP+TQMTLNTFH AG    NVTLG
Sbjct: 1052 NKLAFNHVIGELQNRWDRAFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLG 1111

Query: 1180 IPRLQEILTIASKDIKTPVITCPL 1203
            +PRL+EIL +A K+IKTP +   L
Sbjct: 1112 VPRLKEILNLA-KNIKTPSMAVYL 1134



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 30/55 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVE 55
           CKTC Q    CPGHFGHI+L  PVY+P     +  +L+ +C  C    A   + E
Sbjct: 69  CKTCSQPMSECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADESDPE 123


>gi|384253754|gb|EIE27228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Coccomyxa subellipsoidea C-169]
          Length = 1566

 Score =  319 bits (818), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 232/677 (34%), Positives = 328/677 (48%), Gaps = 123/677 (18%)

Query: 367  ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
            I Q L+ KEG  R  LMGKRV+++ R+VIS DP ++++E+G+P   AL LTYPE VTP N
Sbjct: 256  ISQRLKGKEGRVRGNLMGKRVDFSARTVISGDPNISIDELGVPWSIALNLTYPETVTPHN 315

Query: 427  VVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN 486
               L+  + NG                   PP  +       + D  R  +    KDSD 
Sbjct: 316  YKWLQQLVENGPH-----------------PPAGQTGAKYIIREDGQRLDLRFLRKDSDR 358

Query: 487  EFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
              E G  V RHL +GD VL NRQP+LHK S+M H VR+L    T R++ +  S YNADFD
Sbjct: 359  HLEFGYKVERHLVNGDYVLFNRQPSLHKMSMMGHKVRILP-YSTFRLNLSVTSPYNADFD 417

Query: 546  GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
            GDEMN+H PQ   +R E   I+      V P    P+  ++QD ++   L+TK+DTF+ +
Sbjct: 418  GDEMNMHVPQTPETRTETREIMMVPRNIVSPQANKPVIGIVQDTLLGCRLMTKRDTFIEK 477

Query: 606  DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
            D F  +L         L  + GK              +P +PAI KP+PLWTGKQV    
Sbjct: 478  DLFMNILM-------WLEDWDGK--------------IP-MPAILKPKPLWTGKQVY--- 512

Query: 666  LNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKE 725
                                 + F  R N  +QS   K++                   E
Sbjct: 513  ---------------------NLFMPRVNIRRQSAWYKDN-------------------E 532

Query: 726  VVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF-ADYG-LVHTVQELYG 783
             ++  P                S+ ++LI   +L+ G + K    A  G L+H +    G
Sbjct: 533  PLDFSP----------------SDSQVLIQNGELLTGTLCKKTLGASAGSLIHVIWMEEG 576

Query: 784  SNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL 843
               A   LS        +L  HGF+ G+ D +       + K     SE I         
Sbjct: 577  PEAARAFLSQSQYTTNHWLLQHGFSIGIGDTVA------DAKTMNIISETIA-------- 622

Query: 844  ELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKP 903
            E ++  ++   KL++   +A  G     +  F+ ++   LN  T+     +L    L   
Sbjct: 623  EAKEKVKLLTEKLQNRDLEARPGM--TMMESFEQQVNQVLN--TARDDAGKLAQSSL--- 675

Query: 904  TGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAG 963
               N +  M T+G+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F   D  P + 
Sbjct: 676  DDTNNVVRMVTAGSKGSFINISQMIACVGQQNVEGKRIPFGFQRRTLPHFTKDDLGPESR 735

Query: 964  GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
            GF+ + +L GL PQE +FH M GREGL+DTAVKTS +GY+QR L+K +E L I YD +VR
Sbjct: 736  GFVENSYLRGLTPQELFFHAMGGREGLIDTAVKTSSTGYIQRRLVKAMEDLMIKYDGTVR 795

Query: 1024 DADGSIVQFCYGEDGVD 1040
             A+GS+VQF YGEDG+D
Sbjct: 796  TANGSVVQFLYGEDGMD 812



 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/74 (59%), Positives = 57/74 (77%), Gaps = 1/74 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F  +LA PGE +G +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL EI+ IA
Sbjct: 990  IETRFHAALAYPGEMIGTVAAQSIGEPTTQMTLNTFHFAGVSAKNVTLGVPRLTEIINIA 1049

Query: 1191 SKDIKTPVITCPLL 1204
             K+IKTP +T  LL
Sbjct: 1050 -KNIKTPSLTVFLL 1062


>gi|391335740|ref|XP_003742247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Metaseiulus occidentalis]
          Length = 1842

 Score =  319 bits (817), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 243/803 (30%), Positives = 379/803 (47%), Gaps = 142/803 (17%)

Query: 256  ENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVMEHPQT 310
            E  +E+   IS+ +    G   + A      L V+ VPP+  R P+    G +  +   T
Sbjct: 212  ERVYEIFKHISEEECFCLGMDERYAKPDWMVLTVLAVPPLCVR-PAVVMFGSARNQDDLT 270

Query: 311  VLLSKVLQANIYLANAYVNQPDNAK--VIVARWMNLQQSVNVLFDGKNAAGQRDMASG-- 366
              LS +++AN  +     N+   A   ++      LQ  V  L+D +     R M     
Sbjct: 271  HKLSDIVKANNEIIR---NEQSGAAPHILTENVKMLQFHVATLYDNELPGLPRAMQKSGR 327

Query: 367  ----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERV 422
                + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L ++E+G+P   A  LT+PE V
Sbjct: 328  PLKSLKQRLKAKEGRIRGNLMGKRVDFSARTVITPDPNLKIDEVGVPRSIAQNLTFPEIV 387

Query: 423  TPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGK 482
            TP+N+  +++ +  G   +PGA + +                  G ++D        P K
Sbjct: 388  TPFNIEWMQELVSRGNNQYPGAKYIVR---------------DNGERIDLR----FHP-K 427

Query: 483  DSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYN 541
             SD   + G  V RH+Q+GD+++ NRQPTLHK S+M H +RVL    T RM+ +  + YN
Sbjct: 428  ASDLHLQCGYKVERHVQNGDIIVFNRQPTLHKMSMMGHKIRVLPW-STFRMNLSVTTPYN 486

Query: 542  ADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDT 601
            ADFDGDEMN+H PQ   +RAE   +     Q + P    P+  ++QD + +   +TK+D 
Sbjct: 487  ADFDGDEMNMHVPQSLETRAEIEQLAMVPRQIITPQANKPVMGIVQDTLTAVRKMTKRDV 546

Query: 602  FLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQV 661
            +L +D+   LL         L  + GK              +P +PAI KP+PLWT KQ+
Sbjct: 547  YLEKDQMMNLLMF-------LPIWNGK--------------VP-IPAILKPKPLWTAKQL 584

Query: 662  ITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSG 721
             + +                  +P +                     L +T+  H D   
Sbjct: 585  FSLI------------------IPGNV-------------------NLIRTHSTHPD--- 604

Query: 722  KKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF-ADYG-LVHTVQ 779
                          E +    K     + K++I    L+ G++ K    A  G L+H + 
Sbjct: 605  --------------EEDDGPYKWISPGDTKVIIEHGQLLSGIVCKKTVGASAGSLMHVLF 650

Query: 780  ELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVH 839
               G   AG   S L  +   +L   G + G+ D +  +    + +N +  +    K+  
Sbjct: 651  VEMGHRVAGAFYSHLQTVVNAWLLYEGHSIGIGDTIADQQTYMDIQNTIKKA----KQDV 706

Query: 840  LEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN--KHTSSSVINELLS 897
            +E +E     E++P              G+     F+ ++   LN  +  +     + LS
Sbjct: 707  IEVIEKAHNDELEPTP------------GNTLRQTFENQVNRILNDARDKTGGSAQKSLS 754

Query: 898  EGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWD 957
            E        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P     +TLP F   D
Sbjct: 755  EF-------NNFKSMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDD 807

Query: 958  WAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIS 1017
            + P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY+QR LIK +E + I 
Sbjct: 808  FGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMIC 867

Query: 1018 YDYSVRDADGSIVQFCYGEDGVD 1040
            YD +VR+++G ++QF YGEDG+D
Sbjct: 868  YDGTVRNSNGQVIQFRYGEDGLD 890



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 54/77 (70%), Gaps = 1/77 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
             L  ++ +F  S   PGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI
Sbjct: 1061 LLGEIEARFHQSQGHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEI 1120

Query: 1187 LTIASKDIKTPVITCPL 1203
            + I SK  KTP +T  L
Sbjct: 1121 INI-SKQPKTPSLTVFL 1136



 Score = 48.5 bits (114), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC      CPGHFGH++L  PV++         +L+ +C++C     S        R 
Sbjct: 69  CLTCSGNMTECPGHFGHLELAKPVFHVGFLTKTLKVLRCVCYYCSRLLVSPNH----PRM 124

Query: 61  LELIIKGDIIAAKSLD--LDLPSESSNPEDSDVSNK 94
            E++ K   +  + LD   ++       E+SD S+K
Sbjct: 125 REILTKTRTMQRQRLDKVYEVCKAKRMCEESDTSDK 160


>gi|13274097|emb|CAC33855.1| RNA polymerase II largest subunit [Cystosporogenes operophterae]
          Length = 982

 Score =  319 bits (817), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 212/689 (30%), Positives = 341/689 (49%), Gaps = 119/689 (17%)

Query: 373  KKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRD 432
            K+ G  R  LMGKRV+++ RSVISPDP ++V E+G+P   A   T+PE+V  +N+  L++
Sbjct: 225  KERGRIRGNLMGKRVDFSARSVISPDPNISVQEVGVPVGIAKVHTFPEKVNSFNIDYLQE 284

Query: 433  SIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKM 492
             +  G   HPGA +YL +    R+  N         +L   +G IV+             
Sbjct: 285  LVDRGPNEHPGA-NYLIRSDGQRIDLNFNRH-----ELKLEKGFIVE------------- 325

Query: 493  VYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVH 552
              RH+Q+ D VL NRQP+LHK S+M H  ++++G KT R++ +  S YNADFDGDEMN+H
Sbjct: 326  --RHMQNNDEVLFNRQPSLHKMSMMGHRAKIMQG-KTFRLNLSATSPYNADFDGDEMNLH 382

Query: 553  FPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLL 612
             PQ   S++E  ++ + + Q V P +  P+  ++QD +V A L T +D+F  R E   LL
Sbjct: 383  MPQSYPSKSELCSLTSVSKQIVSPQSNKPVIGIVQDTLVGAFLFTIRDSFFKRAEAMSLL 442

Query: 613  YSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLL-PAIWKPEPLWTGKQVITAVLNHITR 671
            Y+  V                   +  Q+ +  + P I +P  LWTGKQ+ +A+      
Sbjct: 443  YNLNV-----------------FGKKNQDFIDFMKPTILEPVELWTGKQIFSAI------ 479

Query: 672  GRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKP 731
                        LP+ F+  + N     D                          +  + 
Sbjct: 480  ------------LPRIFYDRQANVGIDQD--------------------------ISDRL 501

Query: 732  GEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGT 789
             E KE           ++ + +I    L+ G ID         G++  +    GSN A  
Sbjct: 502  NENKEWNT-----MNCTDSRTIIKNGVLLAGRIDVVSMGTKQGGIIQIIYNDCGSNAALN 556

Query: 790  LLSALSRLFTVF-LQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
             + ++ RL   F L +  F+ G+ D   + D           + ++ ++   +A++  D 
Sbjct: 557  FIDSIQRLINYFLLHISSFSIGIGDC--IADSR---------TLDVCRKTVKKAMDEAD- 604

Query: 849  AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSE---------G 899
             +I  I  ++E++K     G +  A F+ K+   LNK  +   I++  SE          
Sbjct: 605  -DIITITKRNELDKL---PGMSLSATFESKVNVILNKARNIPTISDETSERTGKKSFRSN 660

Query: 900  LLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWA 959
            L+ P   N +  M  SG+KGS +N  QI++ +GQQ +EGKR+P   + ++LP F+ +D+ 
Sbjct: 661  LISPN--NNMKSMVLSGSKGSYINISQITTCMGQQNVEGKRIPFGFNERSLPHFYKYDYT 718

Query: 960  PRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYD 1019
             R+ GF+ + +++G+ P E++FH M G EG++DT++KT+ +GY+QR L+K LE     +D
Sbjct: 719  ARSRGFVQNSYISGMWPDEFFFHAMGGGEGIIDTSIKTAETGYIQRRLVKALEDATAQHD 778

Query: 1020 YSVRDADGSIVQFCYGEDGVDVHQTSFIS 1048
            YSVR+  G I QF YG+D  D      IS
Sbjct: 779  YSVRNGSGDIYQFKYGDDSFDATHLENIS 807


>gi|322702468|gb|EFY94113.1| DNA-directed RNA polymerase III largest subunit [Metarhizium
            anisopliae ARSEF 23]
          Length = 1364

 Score =  319 bits (817), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 237/779 (30%), Positives = 368/779 (47%), Gaps = 140/779 (17%)

Query: 281  IFFLGVVLVPPIKFRLPSKGGDSVM-EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
            +F    +  PP+  R PS   D+   E   T  L+ ++  +  + +A + +    + I+ 
Sbjct: 177  MFIWQYLPAPPVCIR-PSIAQDNASNEDDLTTKLADIVWVSGMIRSA-LQKGSPIQTIME 234

Query: 340  RWMNLQQSVNVLFD----GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
            +W  LQ  V +  +    G    G      GICQ L+ K+G FR  L GKRV+++ R+VI
Sbjct: 235  QWEYLQTQVAIYINSDVPGLQQPGFGKPIRGICQRLKGKQGRFRGNLSGKRVDFSGRTVI 294

Query: 396  SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMR 455
            SPDP L ++E+ +P   A  LTYPER    N+ KLR  I NG  + PGA   L       
Sbjct: 295  SPDPNLGIDEVAVPQLVAKNLTYPERAQRQNIEKLRRCIRNGPNVWPGAQCVL------- 347

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEF------EGKMVYRHLQDGDVVLVNRQP 509
                 KMR           G      K +D E        G +V RH++DGD+VL NRQP
Sbjct: 348  -----KMR----------EGGYKISLKFADTELIANKLCIGDVVERHIEDGDIVLFNRQP 392

Query: 510  TLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNA 569
            +LHK SIM+H V+V +  +T R++   C+ YNADFDGDEMN+H PQ E +R EA +++  
Sbjct: 393  SLHKLSIMSHFVKV-RPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAMSLMGV 451

Query: 570  NNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKP 629
             +  + P +G+P+ +  QD I +A LL+ KD F +R  F  +                  
Sbjct: 452  KHNLITPKSGEPIIAATQDFITAAYLLSYKDRFFDRKTFTTICIH--------------- 496

Query: 630  GQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFF 689
                ++    Q  LP  PAI  P+ LWTGKQ+   ++      R P +V    +     F
Sbjct: 497  ----MLDGGTQLDLP-PPAIIVPKTLWTGKQIFNVLMR--PNNRSPVMVNLDARCKS--F 547

Query: 690  KTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSE 749
             TR                                      PG+  + + N        +
Sbjct: 548  VTR--------------------------------------PGQCPDMDPN--------D 561

Query: 750  EKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHG 806
              L++  + ++ G +DK+         + + +   YG + A + ++ L++L   +L   G
Sbjct: 562  GWLVVRNSQVMCGQMDKSTVGSGKKDSIFYVILRDYGPDEAVSAMNRLAKLCARYLTNRG 621

Query: 807  FTCGVDDLLILKDKERERKNHLHGS-----EEIGKRVHLEALELEDGAEIDPIKLKSEIE 861
            F+ GV D+       +E  +HL  +     + I       +LE   G +     ++  +E
Sbjct: 622  FSIGVGDVYPTASLRKE-IDHLVSTAYKKCDNIIATFQAGSLEKAPGCD-----MEQTLE 675

Query: 862  KAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSK 921
             ++ G            + S++ +      IN L        +  N   +M  SG+KGS 
Sbjct: 676  NSISG------------VLSKVRQQAGEHCINTL--------SRHNAPLIMAKSGSKGSD 715

Query: 922  VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
            +N  Q+ S +GQQ + G+RVP     ++LP FH     P + GF+ + F +GL P E+ F
Sbjct: 716  INVAQMVSLVGQQIIGGQRVPDGFQDRSLPHFHKNARQPPSKGFVKNSFYSGLLPTEFLF 775

Query: 982  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            H ++GREGLVDTAVKT+ +GY+ R L+K+LE L + YD +VR + G+IVQF +G D +D
Sbjct: 776  HAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSVKYDNTVRTSGGNIVQFQFGADNLD 834



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 55/78 (70%), Gaps = 1/78 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            F++L   KF  +  +PG PVG + +QS+GEP TQMTL TFH AG   M +T G+PR+ EI
Sbjct: 968  FIRLCLDKFTKAHVEPGHPVGAVGAQSIGEPGTQMTLKTFHFAGVAGMGMTQGVPRINEI 1027

Query: 1187 LTIASKDIKTPVITCPLL 1204
            +  AS+ I TPVITCPLL
Sbjct: 1028 IN-ASRAISTPVITCPLL 1044


>gi|387594502|gb|EIJ89526.1| RNA polymerase 2 [Nematocida parisii ERTm3]
          Length = 1379

 Score =  319 bits (817), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 186/451 (41%), Positives = 264/451 (58%), Gaps = 52/451 (11%)

Query: 759  LVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLI 816
            ++ G +DK+Q   + YGL H V E YG   +  LL+A+ RL    L + G +C +DDL I
Sbjct: 622  VICGSLDKSQIGTSSYGLTHAVNEKYGGAMSNNLLTAIGRLLNRALVVFGHSCTMDDLAI 681

Query: 817  LKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYF- 875
             +  E  R+  +                L +G+ +    L++  E  ++    AA+    
Sbjct: 682  FEGAEHCRRQEIEQG-------------LLEGSSVSNTFLENNPEYLLKVSRIAAIGEVP 728

Query: 876  --DMKMTSQLNKHTS--SSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHL 931
                ++ +++ K TS  SS + ++ S GL      N + +M  SGAKGS VN  QI S L
Sbjct: 729  EDKKELDAEMRKPTSECSSKVLDITSAGLCTKGKSNRMYIMVASGAKGSLVNLGQIISML 788

Query: 932  GQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLV 991
            GQQELEG RVP M +G+TLP+F+P +  PRA GFI  RFLTG+ P+E+YFHCMAGREGL+
Sbjct: 789  GQQELEGMRVPMMPTGRTLPTFNPLENTPRAHGFIAQRFLTGVHPEEFYFHCMAGREGLI 848

Query: 992  DTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFD 1051
            DTAVKTSRSGYLQRCLIK+LE L+I  D SV+DADGS++Q  YGEDG+   +++++   +
Sbjct: 849  DTAVKTSRSGYLQRCLIKHLEGLRIDVDGSVKDADGSVIQMVYGEDGIHPEKSAYLHNHE 908

Query: 1052 ALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAE 1111
                 + G   G+           V+G N   +Y                    ++    
Sbjct: 909  FFNQNQHGVSDGKIHG--------VLGINTGELYN-------------------MRTITG 941

Query: 1112 KFADKFL--SNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + ++K+L  S    ++D L     +++   A+PGE VG+LA+QSVGEPSTQMTLNTFHLA
Sbjct: 942  RVSEKYLKSSERSIRKDNLW---ERYIKCTAEPGEAVGVLAAQSVGEPSTQMTLNTFHLA 998

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
            G G  NVTLG+PRL+E++  A+K IKTP++T
Sbjct: 999  GVGGKNVTLGMPRLKELVMHATKKIKTPIMT 1029



 Score =  290 bits (742), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 183/511 (35%), Positives = 288/511 (56%), Gaps = 55/511 (10%)

Query: 192 GASSDVDAPET--HSFNGTFPGTQDTA-----ARRHQKGSGAVPSGFKKQKDLFSGP--- 241
           G +   D+ ET  H+    F G Q+ A     +   +  SG++    +K+     GP   
Sbjct: 111 GTAQKEDSVETMTHAIRNRFFGLQNKACMWCGSSERKITSGSLRILIEKEAQSKEGPSVI 170

Query: 242 ----LLPSDVKDIIEKLWENEFELC-SFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRL 296
               LLP +   +++KL +NE  L       M ++  G      +FF+ VVLV P + R 
Sbjct: 171 KEELLLPIEAVQMVQKLTQNEEGLLGELFPSMHRKVQGTNFLLPMFFIEVVLVTPNQLRP 230

Query: 297 PSK-GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGK 355
            +K   +S++ +P+TV    ++   I + N    +  +AK + A ++ LQ+ V+ L+  +
Sbjct: 231 MNKLANESIVPNPRTVAYQNIISVCIDVFNL---EDRSAKSVTANYIKLQEVVSELYSAR 287

Query: 356 N-AAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFAL 414
           + ++  +  A G+ QL+EKK+G+FR+ +MGKRVNY  RSVISPDP + V+E+G+P  FA 
Sbjct: 288 DVSSSNKAQAQGLKQLIEKKDGIFRKNIMGKRVNYIARSVISPDPAIGVDEVGLPVEFAS 347

Query: 415 RLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLD---KLSTMRLPPNKKMRISIGRKL- 470
           +LT P  ++P N+  LR ++ING E +PGA    D   +L +++     K RI +  +L 
Sbjct: 348 KLTIPVGISPVNIEGLRQAVINGPE-YPGAEFVEDSSGRLISLKYISRDK-RIHLANQLL 405

Query: 471 -DTSRGAIVQPGKDSDNEFEGKM-----------VYRHLQDGDVVLVNRQPTLHKPSIMA 518
             TS  A     KD+   F G++           V+RH++ GD VLVNRQP+LHK S+M 
Sbjct: 406 TCTSFNAHSITDKDAQEVFTGEVDRQKIEGNIRRVWRHMRSGDNVLVNRQPSLHKVSMMG 465

Query: 519 HVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSN 578
           H V+VL  E+T+R+HY NC++YNADFDGDEMNVHFPQD  S+ E   + + N+ ++  +N
Sbjct: 466 HKVKVLPRERTIRLHYVNCNSYNADFDGDEMNVHFPQDIASQVEVAEVCSTNHCFISATN 525

Query: 579 GDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRS 638
           G P+R  +QDH+V  A+L++K+ F+ +DE+ QLL ++      LG+          I + 
Sbjct: 526 GAPVRGHVQDHVVMGAILSQKNIFVEKDEYAQLLVAA------LGNIPS-------IKKY 572

Query: 639 EQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
             E     PAI +P   +TG Q IT V+ ++
Sbjct: 573 ALE----QPAILRPVRKYTGNQCITGVIRNL 599



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 11 CPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRKLELIIKG-DI 69
          C GHFGHIDL +PVYNP+ +++L  +LK+ C  C+ F+  + E E    +++L   G +I
Sbjct: 24 CLGHFGHIDLPLPVYNPMTYDVLTKVLKQACTVCYRFRMGKDESEGYTAQIKLARYGYEI 83

Query: 70 IAAKSLDL 77
           AA+  DL
Sbjct: 84 EAAQVGDL 91


>gi|397135818|gb|AFO11404.1| RNA polymerase I, partial [Kuraishia capsulata]
          Length = 870

 Score =  319 bits (817), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 223/677 (32%), Positives = 334/677 (49%), Gaps = 132/677 (19%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VIS DP L ++++G+P   A  L+YPE VTP+N+ KL
Sbjct: 142  LKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLSYPETVTPYNIQKL 201

Query: 431  RDSIINGAEIHPGATHYL-DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE 489
             + + NG   HPGA + + D    + L  NK+                     D   ++ 
Sbjct: 202  TEYVRNGPNEHPGAKYVIRDSGDRIDLRYNKR-------------------AGDIALQY- 241

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G  V RHL D D VL NRQP+LHK S+MAH V+V+    T RM+ +  S YNADFDGDEM
Sbjct: 242  GWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMP-YSTFRMNLSVTSPYNADFDGDEM 300

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ E +RAE   I     Q V P +  P+  ++QD +     +T +D F+  D+  
Sbjct: 301  NLHVPQSEETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVM 360

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
             +L+        +  + G              V+P  PAI KP+PLW+GKQ+++      
Sbjct: 361  NMLF-------WIPQWDG--------------VIP-QPAILKPKPLWSGKQLLSTC---- 394

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
                          +P+  +  RF+    S +   D G L                    
Sbjct: 395  --------------IPKGIYLQRFDGSLLSPK---DSGML-------------------- 417

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTA 787
                                    I   +++ GV++KA       GL+HTV    G    
Sbjct: 418  ------------------------IVNGEIMFGVVNKATVGATAGGLIHTVMREKGPQVC 453

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED 847
              L   + ++   +L  +GF+ G+ D   + D+E  R      +E IG     EA E   
Sbjct: 454  AQLFGNIQKVVNYWLLHNGFSIGIGD--AIADRETMRVI----TETIG-----EAKEKVQ 502

Query: 848  GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKN 907
               +D  +   E E  M          F+ K++  LN+   S+  +  LS   LK +  N
Sbjct: 503  NIILDAQRNLLEPEPGM-----TVRESFEQKVSKVLNEARDSAGKSAELS---LKDS--N 552

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
             +  M T+G+KGS +N  Q+S+ +GQQ +EGKR+    + ++LP F   D++  + GF+ 
Sbjct: 553  NVKQMVTAGSKGSYINISQMSACVGQQIVEGKRISFGFADRSLPHFTKDDYSAESKGFVE 612

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
            + +L GL PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD + R++ G
Sbjct: 613  NSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDIMVHYDGTARNSLG 672

Query: 1028 SIVQFCYGEDGVDVHQT 1044
             ++QF YGEDG+D  Q 
Sbjct: 673  DVIQFLYGEDGIDGTQV 689


>gi|440634119|gb|ELR04038.1| hypothetical protein GMDG_06549 [Geomyces destructans 20631-21]
          Length = 1478

 Score =  318 bits (816), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 247/796 (31%), Positives = 370/796 (46%), Gaps = 144/796 (18%)

Query: 266  SDMQQQGFGKKAGH-SIFFLGVVLVPPIKFRLPSKGGDSV-MEHPQTVLLSKVLQANIYL 323
            +D +  G     G   +F    V  PPI  R PS   D    E   T  L  ++  +  +
Sbjct: 254  TDCELLGINPSEGRPEMFLWQYVPAPPICIR-PSVAQDGASTEDDLTSKLGDIVHISSLI 312

Query: 324  ANAYVN-QPDNAKVIVARWMNLQ----QSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
             +A    QP   + I+ +W  LQ      VN    G    G      G CQ L+ K+G F
Sbjct: 313  RSALQKGQP--IQTIMEQWEYLQLQIAMYVNSDVPGLQQPGFGKAIRGFCQRLKGKQGRF 370

Query: 379  RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
            R  L GKRV+++ R+VISPDP L++ E+ IP   A  +TYPERV   N+ KLR+ I  G 
Sbjct: 371  RGNLSGKRVDFSGRTVISPDPNLSIEEVAIPILVATNMTYPERVHDRNIHKLRECIKRGP 430

Query: 439  EIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE------GKM 492
               PGA     K+               GRK+           K +D E+       G +
Sbjct: 431  GKWPGANIVEKKMD--------------GRKVSL---------KHADREYTANTLRVGDV 467

Query: 493  VYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVH 552
            V RHL+DGD++L NRQP+LHK SIM+H V+V +  +T R +   C  YNADFDGDEMN+H
Sbjct: 468  VERHLEDGDIILFNRQPSLHKLSIMSHYVKV-RPWRTFRFNECVCGPYNADFDGDEMNIH 526

Query: 553  FPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLL 612
             PQ E +R EA N++   N    P +G+P+ S  QD I +A LL+ K+ F +R  F  L 
Sbjct: 527  VPQTEEARTEAINLMGVKNNLCTPKSGEPIISATQDFITAAYLLSSKENFFDRKTFAHLC 586

Query: 613  YSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRG 672
                                ++  + + ++ P  PAI KPE LWTGKQV + ++      
Sbjct: 587  ------------------MYMVDGKMDIDIPP--PAIIKPEALWTGKQVFSVLM------ 620

Query: 673  RPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPG 732
            RP                     +K S  K N   K                        
Sbjct: 621  RP---------------------NKTSPVKVNLDAKC----------------------- 636

Query: 733  EEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG---LVHTVQELYGSNTAGT 789
             + +A   ++ + + ++  L++  ++++ G +DK          + +T+   +G + A  
Sbjct: 637  RDYKAVAGQAPDMDPNDGWLVVRNSEVMCGRMDKTTVGSGKKDCIFYTILRDFGPDHAVL 696

Query: 790  LLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGA 849
             ++ L++L   +L   GF+ G+ D+   K  E ++                 AL  +  A
Sbjct: 697  AMNRLAKLSARYLTNRGFSIGISDVYPSKSLEDQKL----------------ALVTKAYA 740

Query: 850  EIDP--IKLKS-EIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
            E D   ++ KS ++EKA     +  +      + S++ +      IN L           
Sbjct: 741  ECDDLIVQFKSGKLEKATGCNMEETLENKISGILSRVRQQAGEFCINTL----------S 790

Query: 907  NWIS--LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGG 964
             W S  +M  SG+KGS +N  Q+ + +GQQ + G RV      +TLP F      P + G
Sbjct: 791  KWNSPLIMAKSGSKGSNINVAQMVTLVGQQMISGARVADGFQDRTLPHFPKNARQPPSKG 850

Query: 965  FIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD 1024
            F+ + F  GL P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +VR+
Sbjct: 851  FVRNSFFGGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRN 910

Query: 1025 ADGSIVQFCYGEDGVD 1040
            + G IVQF +G D +D
Sbjct: 911  SSGGIVQFQFGADKLD 926



 Score = 86.7 bits (213), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 58/84 (69%), Gaps = 1/84 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            +E     F++L   K++ +  +PG  VG + +QS+GEP TQMTL TFH AG   M++T G
Sbjct: 1066 SEATLAKFIELCLTKYLKAHVEPGHAVGAVGAQSIGEPGTQMTLRTFHFAGVAGMSITQG 1125

Query: 1180 IPRLQEILTIASKDIKTPVITCPL 1203
            +PR++EI+  ASK I TPV+TCPL
Sbjct: 1126 VPRIKEIIN-ASKLISTPVMTCPL 1148



 Score = 45.8 bits (107), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF---KASRREVEKC 57
           C+TCG+    C GHFGH+ L +P ++     L+  +L+ IC  C      ++ RR+  K 
Sbjct: 84  CETCGEGLNNCNGHFGHVRLALPAFHIGYLKLVIAILQEICKDCARVLLTESERRQFLKE 143

Query: 58  VRK 60
           +R+
Sbjct: 144 LRR 146


>gi|68300819|gb|AAY89350.1| RNA polymerase II largest subunit [Solanum lycopersicum]
          Length = 773

 Score =  318 bits (816), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 227/696 (32%), Positives = 332/696 (47%), Gaps = 127/696 (18%)

Query: 367  ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
            IC  L+ KEG  R  LMGKRV+++ R+VI+PDP + ++++G+P   AL LTYPE VTP+N
Sbjct: 12   ICSRLKSKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYN 71

Query: 427  VVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN 486
            + +L++ +  G   HP              PP K     I R  D  R  +    K SD 
Sbjct: 72   IERLKELVEYGP--HP--------------PPGKTGAKYIIRD-DGQRLDLRYLKKSSDQ 114

Query: 487  EFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
              E G  V RHL DGD VL NRQP+LHK SIM H ++++    T R++ +  S YNADFD
Sbjct: 115  HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNADFD 173

Query: 546  GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
            GDEMN+H PQ   +RAE   ++      V P    P+  ++QD ++    +TK+DTF+ +
Sbjct: 174  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKVTKRDTFIEK 233

Query: 606  DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
            D F  +L            F GK              +P  P I KP PLWTGKQ    V
Sbjct: 234  DVFMNILM-------WWEDFDGK--------------VPA-PVILKPRPLWTGKQ----V 267

Query: 666  LNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKE 725
             N I              +P+     R++         ++KG ++               
Sbjct: 268  FNLI--------------IPKQINLLRYSVWHND----SEKGYIT--------------- 294

Query: 726  VVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYG 783
                 PG+ +                + I K +L+ G + K         L+H +    G
Sbjct: 295  -----PGDTQ----------------VRIEKGELLSGTLCKKTLGTSTGSLIHVIWXEVG 333

Query: 784  SNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL 843
             + A   L     L   +L    F+ G+ D   + D     K +   S    K   L   
Sbjct: 334  PDAARKFLGHTQWLVNYWLLQQAFSIGIGD--TIADASTMEKINETISNAKAKVKELIKA 391

Query: 844  ELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNK--HTSSSVINELLSEGLL 901
              E   E +P              G   +  F+ ++   LNK    + S   + LSE   
Sbjct: 392  AQEKLLEAEP--------------GRTMMESFENRVNQVLNKARDDAGSSAEKSLSES-- 435

Query: 902  KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 961
                 N +  M T+G+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D+ P 
Sbjct: 436  -----NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPE 490

Query: 962  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1021
            + GF+ + +L GL PQE++FH M GREGL+DTAVKTS +GY+QR L+K +E + + YD +
Sbjct: 491  SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGT 550

Query: 1022 VRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARE 1057
            VR++ G ++QF YGEDG+D        K D+L A++
Sbjct: 551  VRNSLGDVIQFLYGEDGMDSVWIE-TQKLDSLKAKK 585


>gi|391344300|ref|XP_003746439.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Metaseiulus
           occidentalis]
          Length = 1726

 Score =  318 bits (816), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 174/447 (38%), Positives = 256/447 (57%), Gaps = 58/447 (12%)

Query: 251 IEKLWENEFELCSFISDMQQQGFGKKAGH--SIFFLGVVLVPPIKFRLPSKGGDSVMEHP 308
           + +LW  E  +  ++    ++   +   H   +FF+ V+ + P KFR  +       EH 
Sbjct: 279 LRELWLKEHTVLGYLFGAMREAQARGIEHPTDLFFIEVLAISPPKFRPCNFMNGRKYEHQ 338

Query: 309 QTVLLSKV-------------LQAN-----------IYLANAYVNQPDNAKVIVA---RW 341
            T  L++V             ++AN           I   N    +P  A + +     W
Sbjct: 339 LTTCLNRVVRTAHDLQDILVVMKANESDGPKEQKMEILKMNVSTLEPAGADLTIKLHHHW 398

Query: 342 MNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYL 401
             LQ  +NVL+D       ++  +G+ Q+LEKK GL R+ +MGKRVNYA RSVISPDPY+
Sbjct: 399 KLLQVRINVLYDSDLDRNSKE-KTGVKQILEKKAGLLRKHMMGKRVNYAARSVISPDPYI 457

Query: 402 AVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKK 461
            V+EIGIP  FA +L+YP  VTP NV +LR ++ING + +PGA        ++     +K
Sbjct: 458 NVDEIGIPMVFATKLSYPTPVTPRNVDQLRRAVINGPDQYPGAL-------SVEFEDGRK 510

Query: 462 MRISIGR--KLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAH 519
           +R+ +    K +     ++ P  D   +   K+V+RHLQ GD +L+NRQPTLHKPSIMAH
Sbjct: 511 IRLDVASLTKREGIAKTLLTPNPDGSLKNATKIVHRHLQSGDALLLNRQPTLHKPSIMAH 570

Query: 520 VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNG 579
             RVL+ EKTLR+HYANC +YNADFDGDEMN H PQ E++R+EAYNI + N QY+ P +G
Sbjct: 571 RARVLRDEKTLRLHYANCKSYNADFDGDEMNAHLPQSELARSEAYNIASVNYQYLVPKDG 630

Query: 580 DPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSE 639
            PL  LIQDH++   +LT +D F NR+++ +L++ +                   ++  E
Sbjct: 631 TPLSGLIQDHVIGGTILTMRDKFFNREDYQKLVFGA-------------------LTFIE 671

Query: 640 QEVLPLLPAIWKPEPLWTGKQVITAVL 666
           +++L L PAI KP  LWTGKQ+++ ++
Sbjct: 672 RKILTLPPAIRKPVALWTGKQIVSTII 698



 Score =  278 bits (711), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 151/312 (48%), Positives = 209/312 (66%), Gaps = 7/312 (2%)

Query: 747  LSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
            L+E+ ++I   +L+ GV+DKA +  + YGLVH   ELYG  T+  +LS  +RL+T +LQM
Sbjct: 733  LAEDLVVIRDGELLCGVLDKAHYGPSQYGLVHVCYELYGGETSSLVLSGFARLYTHYLQM 792

Query: 805  -HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
             HGFT G+ D+L+  D  R+R+  +      G +V LEAL  E+  E+ P ++KS++   
Sbjct: 793  YHGFTLGIKDILVTPDANRKRRKIMRRRRLGGDKVALEALNAEND-ELSPEEVKSKLRAG 851

Query: 864  MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
                 D  +  +D  M  +L    ++ +    + +GL     +N + LM  SGAKG  VN
Sbjct: 852  HLNREDKFLKVWDASM-KKLTDSINNDINKACMPDGLQVGFPQNNLQLMVQSGAKGGMVN 910

Query: 924  FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
              QIS  LGQ ELEG+RVP   +G++LPSF P+D +PRAGGFI  RFLTG+RPQE++FHC
Sbjct: 911  CMQISCLLGQIELEGRRVPLNAAGRSLPSFKPYDTSPRAGGFIDGRFLTGIRPQEFFFHC 970

Query: 984  MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            MAGREGLVDTAVKTSRSGYLQRCLIK+LE L ++YD +VRD+DGS++QF YGEDG+D+ +
Sbjct: 971  MAGREGLVDTAVKTSRSGYLQRCLIKHLEGLMVNYDQTVRDSDGSVIQFQYGEDGLDILK 1030

Query: 1044 TSFISK--FDAL 1053
               + +  F AL
Sbjct: 1031 LQMLKRKQFPAL 1042



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/108 (56%), Positives = 71/108 (65%), Gaps = 6/108 (5%)

Query: 1098 YIMELPD--ALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVG 1155
            YI   PD   L DN  K   K L       DF  ++   +  +L   GEPVGLLA+QS+G
Sbjct: 1172 YIAVNPDRLLLTDNFNKHEVKVLE----PSDFRDMLYSIYQKALTCAGEPVGLLAAQSIG 1227

Query: 1156 EPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            EPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +ASK+I TP +   L
Sbjct: 1228 EPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASKNISTPSMNLHL 1275



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF 47
           C TC   Q  CPGH GH+ L +P +NP+ F  L+ LL+  C  CH  
Sbjct: 65  CDTCSLSQLHCPGHLGHVTLPLPAFNPIYFRDLHKLLRGSCLSCHRL 111


>gi|387596656|gb|EIJ94277.1| RNA polymerase 2 [Nematocida parisii ERTm1]
          Length = 1428

 Score =  318 bits (816), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 186/451 (41%), Positives = 264/451 (58%), Gaps = 52/451 (11%)

Query: 759  LVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLI 816
            ++ G +DK+Q   + YGL H V E YG   +  LL+A+ RL    L + G +C +DDL I
Sbjct: 671  VICGSLDKSQIGTSSYGLTHAVNEKYGGAMSNNLLTAIGRLLNRALVVFGHSCTMDDLAI 730

Query: 817  LKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYF- 875
             +  E  R+  +                L +G+ +    L++  E  ++    AA+    
Sbjct: 731  FEGAEHCRRQEIEQG-------------LLEGSSVSNTFLENNPEYLLKVSRIAAIGEVP 777

Query: 876  --DMKMTSQLNKHTS--SSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHL 931
                ++ +++ K TS  SS + ++ S GL      N + +M  SGAKGS VN  QI S L
Sbjct: 778  EDKKELDAEMRKPTSECSSKVLDITSAGLCTKGKSNRMYIMVASGAKGSLVNLGQIISML 837

Query: 932  GQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLV 991
            GQQELEG RVP M +G+TLP+F+P +  PRA GFI  RFLTG+ P+E+YFHCMAGREGL+
Sbjct: 838  GQQELEGMRVPMMPTGRTLPTFNPLENTPRAHGFIAQRFLTGVHPEEFYFHCMAGREGLI 897

Query: 992  DTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFD 1051
            DTAVKTSRSGYLQRCLIK+LE L+I  D SV+DADGS++Q  YGEDG+   +++++   +
Sbjct: 898  DTAVKTSRSGYLQRCLIKHLEGLRIDVDGSVKDADGSVIQMVYGEDGIHPEKSAYLHNHE 957

Query: 1052 ALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAE 1111
                 + G   G+           V+G N   +Y                    ++    
Sbjct: 958  FFNQNQHGVSDGKIHG--------VLGINTGELYN-------------------MRTITG 990

Query: 1112 KFADKFL--SNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + ++K+L  S    ++D L     +++   A+PGE VG+LA+QSVGEPSTQMTLNTFHLA
Sbjct: 991  RVSEKYLKSSERSIRKDNLW---ERYIKCTAEPGEAVGVLAAQSVGEPSTQMTLNTFHLA 1047

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
            G G  NVTLG+PRL+E++  A+K IKTP++T
Sbjct: 1048 GVGGKNVTLGMPRLKELVMHATKKIKTPIMT 1078



 Score =  290 bits (742), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 180/499 (36%), Positives = 283/499 (56%), Gaps = 53/499 (10%)

Query: 202 THSFNGTFPGTQDTA-----ARRHQKGSGAVPSGFKKQKDLFSGP-------LLPSDVKD 249
           TH+    F G Q+ A     +   +  SG++    +K+     GP       LLP +   
Sbjct: 172 THAIRNRFFGLQNKACMWCGSSERKITSGSLRILIEKEAQSKEGPSVIKEELLLPIEAVQ 231

Query: 250 IIEKLWENEFELC-SFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSK-GGDSVMEH 307
           +++KL +NE  L       M ++  G      +FF+ VVLV P + R  +K   +S++ +
Sbjct: 232 MVQKLTQNEEGLLGELFPSMHRKVQGTNFLLPMFFIEVVLVTPNQLRPMNKLANESIVPN 291

Query: 308 PQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKN-AAGQRDMASG 366
           P+TV    ++   I + N    +  +AK + A ++ LQ+ V+ L+  ++ ++  +  A G
Sbjct: 292 PRTVAYQNIISVCIDVFNL---EDRSAKSVTANYIKLQEVVSELYSARDVSSSNKAQAQG 348

Query: 367 ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
           + QL+EKK+G+FR+ +MGKRVNY  RSVISPDP + V+E+G+P  FA +LT P  ++P N
Sbjct: 349 LKQLIEKKDGIFRKNIMGKRVNYIARSVISPDPAIGVDEVGLPVEFASKLTIPVGISPVN 408

Query: 427 VVKLRDSIINGAEIHPGATHYLD---KLSTMRLPPNKKMRISIGRKL--DTSRGAIVQPG 481
           +  LR ++ING E +PGA    D   +L +++     K RI +  +L   TS  A     
Sbjct: 409 IEGLRQAVINGPE-YPGAEFVEDSSGRLISLKYISRDK-RIHLANQLLTCTSFNAHSITD 466

Query: 482 KDSDNEFEGKM-----------VYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTL 530
           KD+   F G++           V+RH++ GD VLVNRQP+LHK S+M H V+VL  E+T+
Sbjct: 467 KDAQEVFTGEVDRQKIEGNIRRVWRHMRSGDNVLVNRQPSLHKVSMMGHKVKVLPRERTI 526

Query: 531 RMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHI 590
           R+HY NC++YNADFDGDEMNVHFPQD  S+ E   + + N+ ++  +NG P+R  +QDH+
Sbjct: 527 RLHYVNCNSYNADFDGDEMNVHFPQDIASQVEVAEVCSTNHCFISATNGAPVRGHVQDHV 586

Query: 591 VSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIW 650
           V  A+L++K+ F+ +DE+ QLL ++      LG+          I +   E     PAI 
Sbjct: 587 VMGAILSQKNIFVEKDEYAQLLVAA------LGNIPS-------IKKYALE----QPAIL 629

Query: 651 KPEPLWTGKQVITAVLNHI 669
           +P   +TG Q IT V+ ++
Sbjct: 630 RPVRKYTGNQCITGVIRNL 648



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C +C      C GHFGHIDL +PVYNP+ +++L  +LK+ C  C+ F+  + E E    +
Sbjct: 63  CGSCNLGYNRCLGHFGHIDLPLPVYNPMTYDVLTKVLKQACTVCYRFRMGKDESEGYTAQ 122

Query: 61  LELIIKG-DIIAAKSLDL 77
           ++L   G +I AA+  DL
Sbjct: 123 IKLARYGYEIEAAQVGDL 140


>gi|397135866|gb|AFO11428.1| RNA polymerase I, partial [Aciculoconidium aculeatum]
          Length = 872

 Score =  318 bits (816), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 238/764 (31%), Positives = 371/764 (48%), Gaps = 146/764 (19%)

Query: 292  IKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVL 351
            I F   ++G D +     T  L+ VL+ANI +    ++   + + +++ +  L Q     
Sbjct: 63   IAFNDTARGEDDL-----TFKLADVLKANINVQKLEMD--GSPQHVISEFEALLQFHVAT 115

Query: 352  FDGKNAAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
            +   + AGQ        R + S I   L+ KEG  R  LMGKRV+++ R+VIS DP L +
Sbjct: 116  YMDNDIAGQPQALQKTGRPIKS-IRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDL 174

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL-DKLSTMRLPPNKKM 462
            +++G+P   A  L+YPE VTP+N+ +L + + NG   HPGA + + D    + L  NK+ 
Sbjct: 175  DQVGVPISIARTLSYPEIVTPYNIHRLTEFVRNGPNEHPGAKYVIRDTGDRIDLRYNKR- 233

Query: 463  RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
                                D   ++ G  V RHL D D VL NRQP+LHK S+MAH V+
Sbjct: 234  ------------------AGDIALQY-GWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVK 274

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            V+    T R++ +  S YNADFDGDEMN+H PQ   +R+E   I     Q V P +  P+
Sbjct: 275  VMP-YSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSPQSNKPV 333

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
              ++QD +     +T +D ++  D+   + Y        + ++ G              V
Sbjct: 334  MGIVQDTLCGVRKMTLRDIYIEYDQVMNICY-------WIPNWDG--------------V 372

Query: 643  LPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRK 702
            +P  PAI KP+PLWTGKQ+++                    +P+     RF+  K     
Sbjct: 373  IP-PPAIVKPKPLWTGKQLLSMA------------------IPKGIHLQRFDGGKDM-LS 412

Query: 703  KNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRG 762
             ND G L                +V+G                            +++ G
Sbjct: 413  PNDTGML----------------IVDG----------------------------EIMFG 428

Query: 763  VIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDK 820
            V+DK        GL+HTV    G      L S++ ++   +L  +GF+ G+ D +     
Sbjct: 429  VVDKKTVGATGGGLIHTVMREKGPQVCAKLFSSIQKVVNYWLLHNGFSIGIGDTIADAGT 488

Query: 821  ERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMT 880
             +   + +  ++E    + L+A   ++  E +P              G      F+  ++
Sbjct: 489  XKTITSTIQEAKEKVXEIILDA--QQNRXEPEP--------------GMTLRESFEHNVS 532

Query: 881  SQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKR 940
              LN+   ++  +   +E  LK    N +  M TSG+KGS +N  Q+S+ +GQQ +EGKR
Sbjct: 533  RILNQARDTAGRS---AEMNLKDL--NNVKQMVTSGSKGSFINISQMSAXVGQQIVEGKR 587

Query: 941  VPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRS 1000
            +P   S +TLP F   D++P + GF+ + +L GL PQE++FH MAGREGL+DTAVKT+ +
Sbjct: 588  IPFGFSDRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAET 647

Query: 1001 GYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT 1044
            GY+QR L+K LE + + YD + R++ G IVQF YGEDG+D  Q 
Sbjct: 648  GYIQRRLVKALEDIMVHYDGTTRNSLGDIVQFVYGEDGIDGTQV 691


>gi|302927295|ref|XP_003054466.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256735407|gb|EEU48753.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1750

 Score =  318 bits (815), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 223/671 (33%), Positives = 323/671 (48%), Gaps = 124/671 (18%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VI+ D  L+++E+G+P   A  LTYPE VTP+N+ +L
Sbjct: 341  LKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGRL 400

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
               + NG   HPGA  Y+ +    R+      R           GAI         E+ G
Sbjct: 401  HQYVENGPNEHPGA-KYVIRADGQRIDLRHHRRA----------GAISL-------EY-G 441

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RHL DGD ++ NRQP+LHK S+M H VRV+    T R++ +  S YNADFDGDEMN
Sbjct: 442  WKVERHLIDGDYIIFNRQPSLHKESMMGHRVRVMP-YSTFRLNLSVTSPYNADFDGDEMN 500

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E +RAE   +       V P    PL  ++QD +     L ++DTFL +++   
Sbjct: 501  LHVPQSEETRAEVKELCLVPLNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFLTKEQI-- 558

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
                       + S    P    +I +         PAI KP P WTGKQ+I+ V+    
Sbjct: 559  -----------MNSMLWVPNWDGVIPQ---------PAILKPRPRWTGKQLISMVI---- 594

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
               P  V    G             DK+ D    D+G L +  ++      KK  +V   
Sbjct: 595  ---PKEVTLHNG------------TDKKEDAPLKDEGILIQAGQLMYGLPTKK--IVGAA 637

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTL 790
             G                                        G+VH      G+  A   
Sbjct: 638  AG----------------------------------------GIVHISYNELGAEGAMAF 657

Query: 791  LSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAE 850
            L+ + ++ T +L  +G + G+ D   + DK    K  +H  EE  +   L A+   +  E
Sbjct: 658  LNGVQQVVTYWLLNNGHSIGIGD--TIPDKATIEKVQVHIDEEKAEVARLTAMATANELE 715

Query: 851  IDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS 910
              P              G    A F+ K++  LN+    +      ++  LK +  N   
Sbjct: 716  ALP--------------GMNVRATFENKVSMALNQARDKAGTT---TQKSLKDS--NNAV 756

Query: 911  LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRF 970
             M +SG+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D++P A GF+ + +
Sbjct: 757  TMASSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSY 816

Query: 971  LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIV 1030
            L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE L   YD +VR++ G +V
Sbjct: 817  LRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVV 876

Query: 1031 QFCYGEDGVDV 1041
            QF YGEDG+D 
Sbjct: 877  QFLYGEDGLDA 887



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 61/84 (72%), Gaps = 1/84 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            N++A    +  +++++  +   PGE VG+LA+QS+GEP+TQMTLNTFH AG    NVTLG
Sbjct: 1051 NKLAFDHVIGELQNRWDRAFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLG 1110

Query: 1180 IPRLQEILTIASKDIKTPVITCPL 1203
            +PRL+EIL +A K+IKTP +   L
Sbjct: 1111 VPRLKEILNLA-KNIKTPSMAVYL 1133



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVE 55
           CKTC Q    CPGHFGHI+L  PVY+P     +  +L+ +C  C    A  R+ E
Sbjct: 69  CKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTRDPE 123


>gi|397135946|gb|AFO11468.1| RNA polymerase I, partial [Wickerhamiella domercqiae]
          Length = 853

 Score =  318 bits (814), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 214/676 (31%), Positives = 329/676 (48%), Gaps = 128/676 (18%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRVN++ R+VI+ DP L ++++G+P   A  LTYPE VTP+N+ +L
Sbjct: 142  LKGKEGRLRGNLMGKRVNFSARTVITGDPNLDLDQVGVPKSIARTLTYPEAVTPYNIHRL 201

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
               + NG   HPGA  Y+ + +  R+      R+                  D   ++ G
Sbjct: 202  TQYVRNGPNEHPGA-KYIVRDTGERIDLRYHKRVG-----------------DIALQY-G 242

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RHL D D VL NRQP+LHK S+MAH V+V+    T R++ +  S YNADFDGDEMN
Sbjct: 243  WKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMP-YSTFRLNLSVTSPYNADFDGDEMN 301

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E +RAE   +     Q V P +  P+  ++QD +     +T +DTF++      
Sbjct: 302  LHVPQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLAGIRKMTLRDTFIDYAAVQN 361

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            +L+        +  + G              V+P  PAI KP+PLWTGKQ+ +  +    
Sbjct: 362  ILF-------WVPDWDG--------------VVPP-PAILKPKPLWTGKQMASMAI---- 395

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                          P   F  RF+                  N +H  K           
Sbjct: 396  --------------PAGIFMQRFD----------------DNNPLHSPK----------- 414

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAG 788
                              +  +L+YK  ++ GV++K        GL+HT+    G     
Sbjct: 415  ------------------DNGMLVYKGQVMYGVVNKKTVGSTAGGLIHTIFREKGPYVCA 456

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
               S++ ++   +L  +GF+ G+ D +  +   R   N +  +++  +R+        D 
Sbjct: 457  RFFSSIQKIVNFWLLHNGFSIGIGDTIADRATMRNVTNTIADAKQQVQRI-------TDD 509

Query: 849  AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNW 908
            A+ +   L  E    +R   +AAV          LN    ++       E  +     N 
Sbjct: 510  AQAN--TLSPEPGMTLRESFEAAVILV-------LNNCRDTAG-----REAEMSLQDTNN 555

Query: 909  ISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIID 968
            +  M ++G+KGS +N  Q+S+ +GQQ +EG+R+      +TLP F   D++P + GF+ +
Sbjct: 556  VKQMVSAGSKGSFINISQMSACVGQQIVEGRRIAFGFVDRTLPHFMRDDYSPESKGFVEN 615

Query: 969  RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGS 1028
             +L GL PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD S R++ G 
Sbjct: 616  SYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVQYDGSARNSLGD 675

Query: 1029 IVQFCYGEDGVDVHQT 1044
            ++QF YGEDG+D  Q 
Sbjct: 676  VIQFTYGEDGLDGAQV 691


>gi|397135876|gb|AFO11433.1| RNA polymerase I, partial [Hyphopichia heimii]
          Length = 872

 Score =  318 bits (814), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 238/768 (30%), Positives = 367/768 (47%), Gaps = 154/768 (20%)

Query: 292  IKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVL 351
            I F   ++G D +     T  L+ VL+ANI +    ++   + + +++ +  L Q     
Sbjct: 63   IAFNDTARGEDDL-----TFKLADVLKANINVQRLEMD--GSPQHVISEFEALLQFHVAT 115

Query: 352  FDGKNAAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
            +   + AGQ        R + S I   L+ KEG  R  LMGKRV+++ R+VIS DP L +
Sbjct: 116  YMDNDIAGQPQALQKTGRPIKS-IRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDL 174

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL-DKLSTMRLPPNKKM 462
            +++G+P   A  L+YPE VTP+N+ +L + + NG   HPGA + + D    + L  NK+ 
Sbjct: 175  DQVGVPISIARTLSYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKR- 233

Query: 463  RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
                                D   ++ G  V RHL D D VL NRQP+LHK S+MAH V+
Sbjct: 234  ------------------AGDIALQY-GWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVK 274

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            V+    T R++ +  S YNADFDGDEMN+H PQ   +RAE   I     Q V P +  P+
Sbjct: 275  VMP-YSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSLICAVPLQIVSPQSNKPV 333

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
              ++QD +     +T +DTF+  D+   +LY        + ++ G              V
Sbjct: 334  MGIVQDTLCGVRKMTLRDTFIEYDQVMNMLY-------WIPNWDG--------------V 372

Query: 643  LPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRK 702
            +P  PAI KP+PLW+GKQ+++                    +P+     RF         
Sbjct: 373  IP-PPAIVKPKPLWSGKQLLSMA------------------IPKGIHLQRF--------- 404

Query: 703  KNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRG 762
              D G    TN M    +G    +V+G+                            ++ G
Sbjct: 405  --DDG----TNLMSPKDNGML--IVDGE----------------------------IMFG 428

Query: 763  VIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDK 820
            V+ K      G  L+HTV    G      L SA+ ++   +L  +GF+ G+ D +   D 
Sbjct: 429  VVTKLTVGATGGGLIHTVMREKGPYVCAQLFSAIQKVVNYWLLHNGFSIGIGDTIADSDT 488

Query: 821  ERERKNHLHGSEEIGKRVHLEA----LELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFD 876
             +     +  ++   + + LEA    LE E G  +     +  + + +    D A    +
Sbjct: 489  MKTVTTTIQEAKNKVQEIILEAQQNKLEPEPGMTLRE-SFEHNVSRVLNQARDTAGRSAE 547

Query: 877  MKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
            M +                           N +  M TSG+KGS +N  Q+S+ +GQQ +
Sbjct: 548  MNLKDL------------------------NNVKQMVTSGSKGSFINISQMSACVGQQIV 583

Query: 937  EGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVK 996
            EGKR+P   + ++LP F   D++P + GF+ + +L GL PQE++FH MAGREGL+DTAVK
Sbjct: 584  EGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVK 643

Query: 997  TSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT 1044
            T+ +GY+QR L+K LE + + YD + R++ G I+QF YGEDG+D  Q 
Sbjct: 644  TAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTQV 691


>gi|189197231|ref|XP_001934953.1| DNA-directed RNA polymerase II subunit RPB1 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
 gi|187980901|gb|EDU47527.1| DNA-directed RNA polymerase II subunit RPB1 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
          Length = 1742

 Score =  318 bits (814), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 214/682 (31%), Positives = 332/682 (48%), Gaps = 145/682 (21%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VI+ DP L+++++G+P   A  LTYPE VT +N+ KL
Sbjct: 337  LKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNISKL 396

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
             + + NG   HPGA +Y+ K    RL       +   + LD  R               G
Sbjct: 397  TNLVRNGPNQHPGA-NYVIKADGARL------DLKHNKNLDDLRLQY------------G 437

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RH+ D DV++ NRQP+LHK S+M H V+V+    T R++ +  S YNADFDGDEMN
Sbjct: 438  WKVERHINDDDVIIFNRQPSLHKESMMGHRVKVMP-YSTFRLNLSVTSPYNADFDGDEMN 496

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ + +RAE  N+     Q V P    PL  ++QD ++    ++++D F+  ++   
Sbjct: 497  LHVPQSDETRAEVQNLCMVPKQIVSPQKNQPLMGIVQDTLLGVYKMSRRDNFIGIEQVMP 556

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            +L         +  + G              ++P  PAI KP PLWTGKQ+++       
Sbjct: 557  ILM-------WVPDWDG--------------IVP-EPAILKPRPLWTGKQLVSMA----- 589

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                              F    N +K+ D                              
Sbjct: 590  ------------------FPKEVNIEKKED------------------------------ 601

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK--AQFADYGLVHTVQELYGSNTAG 788
                   + + S + ++ ++ L+I    L+ G + K     +  G++H +    G + A 
Sbjct: 602  -------DSSPSPQNDIRDKSLMIKSGQLIYGQVTKKIVGASAGGVIHIIFNELGPDAAV 654

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLI-------LKDKERERKNHLHGSEEIGKRVHLE 841
               +A  R+   +L  HGF+ GV D +        + D+ R+ +  +   E+I ++  L+
Sbjct: 655  KFFNACQRICNWWLLHHGFSFGVGDTIPDPATSEKIADEVRKSREKV---EQIIEQATLD 711

Query: 842  ALELEDGAEIDPI---KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSE 898
             LE   G  I      K++  + +A  GGG AA               TS    N ++  
Sbjct: 712  ELEPMPGMTIRGTFESKVQKFLNEAREGGGTAA--------------QTSLKDFNNVVQ- 756

Query: 899  GLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDW 958
                            SG+KGS VN  Q+ + +GQQ +EG+R+P     +TLP F   D+
Sbjct: 757  -------------TVVSGSKGSTVNISQMVALVGQQAVEGQRIPYGFKYRTLPHFAKDDY 803

Query: 959  APRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISY 1018
            +P + GF+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + Y
Sbjct: 804  SPESRGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVKY 863

Query: 1019 DYSVRDADGSIVQFCYGEDGVD 1040
            D +VR++ G IV+F YGEDG+D
Sbjct: 864  DGTVRNSMGDIVEFIYGEDGLD 885



 Score = 87.4 bits (215), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 63/87 (72%), Gaps = 1/87 (1%)

Query: 1111 EKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
            +K A +   N+ A +  L  ++ +F+ +   PGE VG+LA+QS+GEP+TQMTLNTFH AG
Sbjct: 1043 KKLAVQHRLNKEALKYILGELEDRFLKAAVAPGEMVGVLAAQSIGEPATQMTLNTFHFAG 1102

Query: 1171 RGEMNVTLGIPRLQEILTIASKDIKTP 1197
                NVTLG+PRL+EIL +A+ +IKTP
Sbjct: 1103 VSSKNVTLGVPRLKEILNVAA-NIKTP 1128



 Score = 48.5 bits (114), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKA 49
           C TC +   +CPGHFGHI+L  PV++      +  LL+ +C  C   KA
Sbjct: 69  CSTCKEDIQVCPGHFGHIELHTPVFHVGFVVKIKKLLETVCHTCGLIKA 117


>gi|400602522|gb|EJP70124.1| DNA-directed RNA polymerase III subunit RPC1 [Beauveria bassiana
            ARSEF 2860]
          Length = 1443

 Score =  318 bits (814), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 238/798 (29%), Positives = 382/798 (47%), Gaps = 130/798 (16%)

Query: 257  NEFELCSFISDMQQQGFGKKAGHSIFFLGVVL-VPPIKFRLPSKGGDSVM-EHPQTVLLS 314
            N F+L +  +D +  G     G    F+   L  PP+  R PS   D+   E   T  L+
Sbjct: 237  NLFKLIT-ATDCELLGLNATEGRPEMFIWQFLPAPPVCIR-PSVAQDNASNEDDITTKLA 294

Query: 315  KVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD----GKNAAGQRDMASGICQL 370
             ++  +  + +A + +    + I+ +W  LQ  + +  +    G    G      G CQ 
Sbjct: 295  DIVWVSGMIRSA-LQKGSAIQTIMEQWEYLQTQIAMYVNSDVPGLQQPGFGKAMRGFCQR 353

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ K+G FR  L GKRV+++ R+VISPDP L ++E+ IP   A  LTYPERV   N+ KL
Sbjct: 354  LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLGIDEVAIPQLVAKNLTYPERVQRQNMAKL 413

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNK-KMRISIGRKLDTSRGAIVQPGKDSDNEFE 489
            R  + NG ++ PGA       S +++     K+ +  G +   +R   +           
Sbjct: 414  RQCVKNGPDVWPGAQ------SVIKMDEGGYKINLKFGNRNMVARDLRI----------- 456

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G +V RH++DGD+VL NRQP+LHK SIM+H+V+V +  +T R++   C+ YNADFDGDEM
Sbjct: 457  GDVVERHIEDGDIVLFNRQPSLHKLSIMSHLVKV-RPWRTFRLNECVCNPYNADFDGDEM 515

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ E +R EA  ++   +    P +G P+    QD I +A LL+ KD F +R  F 
Sbjct: 516  NLHVPQTEEARTEAITLMGVRHNLTTPKDGAPIIGATQDFITAAFLLSSKDRFFDRKTFT 575

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
             +                     +L + +  ++ P  P I  P  LWTGKQ+   ++   
Sbjct: 576  YMCM------------------HMLETNTRFDLPP--PTIIAPVALWTGKQLFNVMM--- 612

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
               RP                     +K+S  + N + K        K  SGK K + + 
Sbjct: 613  ---RP---------------------NKESKIRINFESKC-------KTFSGKSKNIPDM 641

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNT 786
             P                ++  L++  ++++ GV+DKA         + + +   +G++ 
Sbjct: 642  DP----------------NDGWLVVRNSEVMCGVMDKATVGTGKKDSVFYVMLRDFGADH 685

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEA 842
            A T ++ L+RL    L   GF+ GV D+     +  + ER         +++ +      
Sbjct: 686  AATAMNRLARLCARTLTNRGFSIGVGDVFPTGSLTAEVERLVSIAYAQCDDLIESFKAGK 745

Query: 843  LELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLK 902
            LE   G       L+  +E ++ G            + S++ +      ++ L       
Sbjct: 746  LEKSPGC-----NLEQTLENSISG------------ILSKVRQQAGDYCVDTL------- 781

Query: 903  PTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRA 962
             +  N   +M  SG+KGS +N  Q+ + +GQQ + G+RVP     ++LP F      P +
Sbjct: 782  -SRNNAPLIMAKSGSKGSDINVAQMVALVGQQIIGGQRVPDGFQDRSLPHFFKNARQPPS 840

Query: 963  GGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSV 1022
             GF+ + F TGL P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L   YD +V
Sbjct: 841  KGFVKNSFYTGLYPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTV 900

Query: 1023 RDADGSIVQFCYGEDGVD 1040
            R + G++VQF +G D +D
Sbjct: 901  RTSGGTVVQFQFGGDRLD 918



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 57/78 (73%), Gaps = 1/78 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            F+KL  HK+  +  +PG  VG + +QS+GEP TQMTL TFH AG   M++T G+PR++EI
Sbjct: 1052 FVKLCLHKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEI 1111

Query: 1187 LTIASKDIKTPVITCPLL 1204
            +  ASK I TPVITCPL+
Sbjct: 1112 IN-ASKLISTPVITCPLM 1128


>gi|308808522|ref|XP_003081571.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
 gi|116060036|emb|CAL56095.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
          Length = 1673

 Score =  318 bits (814), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 220/681 (32%), Positives = 336/681 (49%), Gaps = 131/681 (19%)

Query: 367  ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
            I + L+ K G  R  LMGKRV+++ R+VI+PDP L ++E+G+P   AL +TYPE VTP+N
Sbjct: 332  ISERLKGKAGRIRGNLMGKRVDFSARTVITPDPNLMLDELGVPWSIALNMTYPETVTPYN 391

Query: 427  VVKLRDSIINGAEIHPGAT--HYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDS 484
            + +L+  + NG    PG T   Y+ +                G++LD      ++   + 
Sbjct: 392  IERLQRLVDNGPHPPPGETGARYIIRED--------------GQRLDLR---FLKKASEK 434

Query: 485  DNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADF 544
              E+ G  V RH+ +GDVVL NRQP+LHK SIM H VR++    T R++ +    YNADF
Sbjct: 435  RLEY-GYKVERHMVNGDVVLFNRQPSLHKMSIMGHRVRIMP-YSTFRLNLSVTPPYNADF 492

Query: 545  DGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLN 604
            DGDEMN+H PQ   ++AE   ++      V P    P+ +++QD ++   L+TK+DTF+ 
Sbjct: 493  DGDEMNMHLPQSYETKAEVKELMMVPKMIVSPQANKPVMAIVQDTLLGCRLITKRDTFIP 552

Query: 605  RDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITA 664
            +D F  ++         L  + GK  +               PAI KP+PLWTGKQV + 
Sbjct: 553  KDVFMNIIM-------WLEDWDGKIPK---------------PAILKPQPLWTGKQVFSM 590

Query: 665  VLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKK 724
            +L       P   + R     +D     F+ D    R   ++G+L  T  + K   G   
Sbjct: 591  ML-------PKVNLLRTSAWARDADDVTFSVDDTGVRI--EQGEL-LTGTLCKKTMGSGG 640

Query: 725  EVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQ-FADYGLVHTVQELYG 783
              +     EE                    +     RG+I + Q   +Y L+H       
Sbjct: 641  GGLIHVTWEE--------------------WGPIAARGLISQTQTLVNYWLLH------- 673

Query: 784  SNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGS----EEIGKRVH 839
                                 HGFT G+ D +   +      N +  +    +E+ K+  
Sbjct: 674  ---------------------HGFTVGIADTIADDETMFTINNTITKAKADVKEVIKQAQ 712

Query: 840  LEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEG 899
               LEL+ G  +                       F+ K+   LNK   ++  +   ++ 
Sbjct: 713  NNELELQPGMTMQ--------------------QSFEQKVNQILNKARDNAGNS---AQN 749

Query: 900  LLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWA 959
             LK T  N + +M T+G+KGS +N  Q+ + +GQQ +EGKR+P    G+TLP F   D+ 
Sbjct: 750  SLKDT--NNVKMMVTAGSKGSFLNISQMIACVGQQNVEGKRIPYGFKGRTLPHFSKDDFG 807

Query: 960  PRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYD 1019
            P + GF+ + +L GL PQE++FH M GREGL+DTAVKTS +GY+QR L+K +E + + YD
Sbjct: 808  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVVVKYD 867

Query: 1020 YSVRDADGSIVQFCYGEDGVD 1040
             +VR++ G ++QF YGEDG+D
Sbjct: 868  GTVRNSVGDVIQFLYGEDGMD 888



 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 58/73 (79%), Gaps = 1/73 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            V+ +F ++LA PG+ +G++A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ IA
Sbjct: 1065 VESRFKMALAPPGDGIGVVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIA 1124

Query: 1191 SKDIKTPVITCPL 1203
             K IKTP +T  L
Sbjct: 1125 -KQIKTPSLTVAL 1136


>gi|145490118|ref|XP_001431060.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398162|emb|CAK63662.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1750

 Score =  317 bits (813), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 242/786 (30%), Positives = 368/786 (46%), Gaps = 148/786 (18%)

Query: 272  GFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQ-TVLLSKVLQANIYLANAYVNQ 330
            GF K +      +  +LV P + R   +   + +   Q T +   +LQ N  +AN     
Sbjct: 220  GFTKDSRPRDLIIKFLLVMPPQVRPAIEMNPARIAQDQYTQIYKSILQKNNEIANC---S 276

Query: 331  PDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS-----GICQLLEKKEGLFRQKLMGK 385
             D  +V +A    L + V  + D + A G+  M S      I   L+ KEG FRQ LMGK
Sbjct: 277  SDAERVRLAP--ELMREVAKIIDSEKA-GKIKMKSTQPLKSIRARLKGKEGRFRQNLMGK 333

Query: 386  RVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGAT 445
            RV++  RSVISPD  L ++E+G+P   A +LT PE VT +N+ ++         I    T
Sbjct: 334  RVDFCARSVISPDANLGMDELGVPQIVADQLTIPEEVTEYNLERV---------IQLAKT 384

Query: 446  HYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEF-----EGKMVYRHLQDG 500
            + +  +      P  K R       D +         D++++      +G +V R LQDG
Sbjct: 385  NKIKYVIVPITDPRSKQRKFQALYFDFT---------DTEDQIRQKINQGVIVERCLQDG 435

Query: 501  DVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSR 560
            D VL NRQPTLH+ S+M H VR+L    T R++ + C+ YNADFDGDEMN+H PQ   + 
Sbjct: 436  DFVLFNRQPTLHRMSMMGHRVRILP-YSTFRLNLSVCTPYNADFDGDEMNMHVPQSYETI 494

Query: 561  AEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSS 620
            AE   + +   Q V P +  P+  ++QD ++   L T++DTFL RD+   L+  +     
Sbjct: 495  AELKYLAHVPRQIVTPKSNQPVMGIVQDSLLGCCLFTQRDTFLTRDQVMHLMMWN----- 549

Query: 621  GLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVER 680
                FTG+              LP +PAI KP+ LWTGKQ+++ ++       P  +   
Sbjct: 550  --EQFTGE--------------LP-MPAILKPQELWTGKQIMSMII-------PQSINTE 585

Query: 681  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
             G    D  K  +NAD +S                                         
Sbjct: 586  RGIREDDLRKPNWNADDKS----------------------------------------- 604

Query: 741  KSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLF 798
                       L I +  LV G+ +K         +VH      G+      +++  R+ 
Sbjct: 605  -----------LCIQRGSLVSGIFNKELVGQGAGSVVHLCWLDLGAEKTLEFMTSCQRIV 653

Query: 799  TVFLQMHGFTCGVDDL-----LILKDKERERKNHLHGSEEIGK--RVHLEALELEDGAEI 851
              +L MH FT G  D+     L+ + ++R ++      EE  K  ++ L+A +++D    
Sbjct: 654  NNWLIMHSFTVGCQDIAPHINLVAETEKRSKEQ----DEEYIKLLQIFLDAKKIQDN--- 706

Query: 852  DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
                            G   +  F+     +LNK      IN  ++E + +   +N +  
Sbjct: 707  -----------RYHQKGKRIMDSFEYSFNMKLNKVRDD--INSKVTETIDQI--RNCMYK 751

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            M  + +KG   N  QI+S +GQQ LE KR+    + +TLP F  +D+ P A GF+   F 
Sbjct: 752  MIWAKSKGEASNLAQITSLVGQQNLESKRIQFGFAYRTLPHFSKFDYGPEARGFVASNFF 811

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
             GL+P E++FH M GR+GL+DTAVKTSR+GY+QR LIK +E + + YD S RD+ G++ Q
Sbjct: 812  KGLKPTEFFFHTMGGRDGLIDTAVKTSRTGYIQRKLIKAVEDVFVRYDSSCRDSVGAVYQ 871

Query: 1032 FCYGED 1037
            F YGED
Sbjct: 872  FHYGED 877



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 59/79 (74%), Gaps = 2/79 (2%)

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG-RGEMNVTLGIP 1181
            A Q+ +  + +K   S+A PGE VG +A+QS+GEP+TQMTLNTFH +G  G+ NVTLG+P
Sbjct: 1057 AFQELISEIIYKLKKSMAHPGEAVGAIAAQSLGEPTTQMTLNTFHKSGVTGDKNVTLGVP 1116

Query: 1182 RLQEILTIASKDIKTPVIT 1200
            RLQE+L  ASK  KTP +T
Sbjct: 1117 RLQELLD-ASKKTKTPSLT 1134



 Score = 47.4 bits (111), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           CKTCG+ ++ C GHFG I+L  PVY+     ++  +LK IC  C   +  + E
Sbjct: 71  CKTCGETKY-CQGHFGRIELNKPVYHVGFLQIVKKVLKCICHSCGKLRQPQSE 122


>gi|330931381|ref|XP_003303389.1| hypothetical protein PTT_15561 [Pyrenophora teres f. teres 0-1]
 gi|311320680|gb|EFQ88526.1| hypothetical protein PTT_15561 [Pyrenophora teres f. teres 0-1]
          Length = 1738

 Score =  317 bits (813), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 214/682 (31%), Positives = 331/682 (48%), Gaps = 145/682 (21%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VI+ DP L+++++G+P   A  LTYPE VT +N+ KL
Sbjct: 337  LKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNISKL 396

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
             + + NG   HPGA +Y+ K    RL       +   + LD  R               G
Sbjct: 397  TNLVRNGPNQHPGA-NYVIKADGARL------DLKHNKNLDDLRLQY------------G 437

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RH+ D DV++ NRQP+LHK S+M H V+V+    T R++ +  S YNADFDGDEMN
Sbjct: 438  WKVERHINDDDVIIFNRQPSLHKESMMGHRVKVMP-YSTFRLNLSVTSPYNADFDGDEMN 496

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ + +RAE  N+     Q V P    PL  ++QD ++    ++++D F+  ++   
Sbjct: 497  LHVPQSDETRAEVQNLCMVPKQIVSPQKNQPLMGIVQDTLLGVYKMSRRDNFIGIEQVMP 556

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            +L         +  + G              ++P  PAI KP PLWTGKQ+++       
Sbjct: 557  ILM-------WVPDWDG--------------IVP-EPAILKPRPLWTGKQLVSMA----- 589

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                              F    N +K+ D                              
Sbjct: 590  ------------------FPKEVNIEKKED------------------------------ 601

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAG 788
                   + + S + ++ ++ L+I    L+ G + K        G++H +    G + A 
Sbjct: 602  -------DSSPSPQNDIRDKSLMIKSGQLIYGQVTKKIVGASAGGVIHIIFNELGPDAAV 654

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLI-------LKDKERERKNHLHGSEEIGKRVHLE 841
               +A  R+   +L  HGF+ GV D +        + D+ R+ +  +   E+I ++  L+
Sbjct: 655  KFFNACQRICNWWLLHHGFSFGVGDTIPDPATSEKIADEVRKSREKV---EQIIEQATLD 711

Query: 842  ALELEDGAEIDPI---KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSE 898
             LE   G  I      K++  + +A  GGG AA               TS    N ++  
Sbjct: 712  ELEPMPGMTIRGTFESKVQKFLNEAREGGGTAA--------------QTSLKDFNNVVQ- 756

Query: 899  GLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDW 958
                            SG+KGS VN  Q+ + +GQQ +EG+R+P     +TLP F   D+
Sbjct: 757  -------------TVVSGSKGSTVNISQMVALVGQQAVEGQRIPYGFKYRTLPHFAKDDY 803

Query: 959  APRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISY 1018
            +P + GF+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + Y
Sbjct: 804  SPESRGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVKY 863

Query: 1019 DYSVRDADGSIVQFCYGEDGVD 1040
            D +VR++ G IV+F YGEDG+D
Sbjct: 864  DGTVRNSMGDIVEFIYGEDGLD 885



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 63/87 (72%), Gaps = 1/87 (1%)

Query: 1111 EKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
            +K A +   N+ A +  L  ++ +F+ +   PGE VG+LA+QS+GEP+TQMTLNTFH AG
Sbjct: 1043 KKLAVQHRLNKEALKYILGELEDRFLKAAVAPGEMVGVLAAQSIGEPATQMTLNTFHFAG 1102

Query: 1171 RGEMNVTLGIPRLQEILTIASKDIKTP 1197
                NVTLG+PRL+EIL +A+ +IKTP
Sbjct: 1103 VSSKNVTLGVPRLKEILNVAA-NIKTP 1128



 Score = 48.5 bits (114), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKA 49
           C TC +   +CPGHFGHI+L  PV++      +  LL+ +C  C   KA
Sbjct: 69  CSTCKEDIQVCPGHFGHIELHTPVFHVGFVVKIKKLLETVCHTCGLIKA 117


>gi|74830406|emb|CAI39063.1| DNA-directed RNA polymerase II largest subunit [Paramecium
            tetraurelia]
          Length = 1751

 Score =  317 bits (812), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 242/786 (30%), Positives = 368/786 (46%), Gaps = 148/786 (18%)

Query: 272  GFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQ-TVLLSKVLQANIYLANAYVNQ 330
            GF K +      +  +LV P + R   +   + +   Q T +   +LQ N  +AN     
Sbjct: 220  GFTKDSRPRDLIIKFLLVMPPQVRPAIEMNPARIAQDQYTQIYKSILQKNNEIANC---S 276

Query: 331  PDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS-----GICQLLEKKEGLFRQKLMGK 385
             D  +V +A    L + V  + D + A G+  M S      I   L+ KEG FRQ LMGK
Sbjct: 277  SDAERVRLAP--ELMREVAKIIDSEKA-GKIKMKSTQPLKSIRARLKGKEGRFRQNLMGK 333

Query: 386  RVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGAT 445
            RV++  RSVISPD  L ++E+G+P   A +LT PE VT +N+ ++         I    T
Sbjct: 334  RVDFCARSVISPDANLGMDELGVPQIVADQLTIPEEVTEYNLERV---------IQLAKT 384

Query: 446  HYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEF-----EGKMVYRHLQDG 500
            + +  +      P  K R       D +         D++++      +G +V R LQDG
Sbjct: 385  NKIKYVIVPITDPRSKQRKFQALYFDFT---------DTEDQIRQKINQGVIVERCLQDG 435

Query: 501  DVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSR 560
            D VL NRQPTLH+ S+M H VR+L    T R++ + C+ YNADFDGDEMN+H PQ   + 
Sbjct: 436  DFVLFNRQPTLHRMSMMGHRVRILP-YSTFRLNLSVCTPYNADFDGDEMNMHVPQSYETI 494

Query: 561  AEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSS 620
            AE   + +   Q V P +  P+  ++QD ++   L T++DTFL RD+   L+  +     
Sbjct: 495  AELKYLAHVPRQIVTPKSNQPVMGIVQDSLLGCCLFTQRDTFLTRDQVMHLMMWN----- 549

Query: 621  GLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVER 680
                FTG+              LP +PAI KP+ LWTGKQ+++ ++       P  +   
Sbjct: 550  --EQFTGE--------------LP-MPAILKPQELWTGKQIMSMII-------PQSINTE 585

Query: 681  GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
             G    D  K  +NAD +S                                         
Sbjct: 586  RGIREDDLRKPNWNADDKS----------------------------------------- 604

Query: 741  KSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLF 798
                       L I +  LV G+ +K         +VH      G+      +++  R+ 
Sbjct: 605  -----------LCIQRGSLVSGIFNKELVGQGAGSVVHLCWLDLGAEKTLEFMTSCQRIV 653

Query: 799  TVFLQMHGFTCGVDDL-----LILKDKERERKNHLHGSEEIGK--RVHLEALELEDGAEI 851
              +L MH FT G  D+     L+ + ++R ++      EE  K  ++ L+A +++D    
Sbjct: 654  NNWLIMHSFTVGCQDIAPHINLVAETEKRSKEQ----DEEYIKLLQIFLDAKKIQDN--- 706

Query: 852  DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
                            G   +  F+     +LNK      IN  ++E + +   +N +  
Sbjct: 707  -----------RYHQKGKRIMDSFEYSFNMKLNKVRDD--INSKVTETIDQI--RNCMYK 751

Query: 912  MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
            M  + +KG   N  QI+S +GQQ LE KR+    + +TLP F  +D+ P A GF+   F 
Sbjct: 752  MIWAKSKGEASNLAQITSLVGQQNLESKRIQFGFAYRTLPHFSKFDYGPEARGFVASNFF 811

Query: 972  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
             GL+P E++FH M GR+GL+DTAVKTSR+GY+QR LIK +E + + YD S RD+ G++ Q
Sbjct: 812  KGLKPTEFFFHTMGGRDGLIDTAVKTSRTGYIQRKLIKAVEDVFVRYDSSCRDSVGAVYQ 871

Query: 1032 FCYGED 1037
            F YGED
Sbjct: 872  FHYGED 877



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 59/79 (74%), Gaps = 2/79 (2%)

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG-RGEMNVTLGIP 1181
            A Q+ +  + +K   S+A PGE VG +A+QS+GEP+TQMTLNTFH +G  G+ NVTLG+P
Sbjct: 1057 AFQELISEIIYKLKKSMAHPGEAVGAIAAQSLGEPTTQMTLNTFHKSGVTGDKNVTLGVP 1116

Query: 1182 RLQEILTIASKDIKTPVIT 1200
            RLQE+L  ASK  KTP +T
Sbjct: 1117 RLQELLD-ASKKTKTPSLT 1134



 Score = 47.4 bits (111), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
           CKTCG+ ++ C GHFG I+L  PVY+     ++  +LK IC  C   +  + E
Sbjct: 71  CKTCGETKY-CQGHFGRIELNKPVYHVGFLQIVKKVLKCICHSCGKLRQPQSE 122


>gi|340368153|ref|XP_003382617.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Amphimedon queenslandica]
          Length = 1933

 Score =  317 bits (812), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 213/693 (30%), Positives = 341/693 (49%), Gaps = 137/693 (19%)

Query: 359  GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTY 418
            G R + S I Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A  LT+
Sbjct: 325  GGRPLKS-IKQRLKSKEGRIRGNLMGKRVDFSARAVITPDPNLSIDQVGVPRTIAQNLTF 383

Query: 419  PERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIV 478
            PE VTP+N+ ++++ +  G   +PGA + + +                G ++D       
Sbjct: 384  PEVVTPFNIDRMQELVARGHNQYPGAKYIIRE---------------NGERIDLRYHP-- 426

Query: 479  QPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 537
               K SD   + G  + RH+ D D+++ NRQPTLHK S+M H V++L    T R++ +  
Sbjct: 427  ---KPSDLHLQYGYKIERHIVDDDLIVFNRQPTLHKMSMMGHRVKILPW-STFRLNLSVT 482

Query: 538  STYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
            + YNADFDGDEMN+H PQ   ++AE   ++  +   + P +  P+  ++QD + +A   T
Sbjct: 483  TPYNADFDGDEMNLHVPQSLETKAEIQELMMVHRNILTPQSNRPVMGIVQDSLTAATKFT 542

Query: 598  KKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWT 657
            K+D FL ++    LL         L S+ GK              +P +PAI KP+PLWT
Sbjct: 543  KRDVFLEKESMMNLLM-------WLPSWDGK--------------MP-VPAILKPKPLWT 580

Query: 658  GKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHK 717
            GKQ+ + ++                        T  N              + +T+  H 
Sbjct: 581  GKQLFSLIIP----------------------GTNVN--------------VIRTHSTHP 604

Query: 718  D--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG-- 773
            D   +G  K +    PG+ K                +L+    L+ G++ K    + G  
Sbjct: 605  DDEDNGPYKWI---SPGDTK----------------VLVEHGQLLSGILSKDTLGNKGGS 645

Query: 774  LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL----LILKDKERERKNHLH 829
            L+H V    G + A      +  +   FL + G + G+ D     L   D ++  ++  +
Sbjct: 646  LMHVVAMELGPDIARNFYGNIQTVVNNFLMLEGHSIGIGDTIADNLTYNDIQKTIRSAKN 705

Query: 830  GSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN--KHT 887
               E+ K+ H          E++P              G+     F+ ++   LN  +  
Sbjct: 706  DVVEVIKKAH--------NNELEPTP------------GNTLRQTFENQVNRILNEARDK 745

Query: 888  SSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSG 947
            + S     LSE        N   +M T+G+KGSK+N  Q+ + +GQQ +EGKR+P     
Sbjct: 746  TGSSAQRSLSEF-------NNFKIMVTAGSKGSKINISQVIACVGQQNVEGKRIPFGFRH 798

Query: 948  KTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL 1007
            +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKTS +GY+QR L
Sbjct: 799  RTLPHFIKDDYGPESKGFVENSYLAGLTPNEFFFHAMGGREGLIDTAVKTSETGYIQRRL 858

Query: 1008 IKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            +K +E L   YD ++R+++  ++Q CYGEDG+D
Sbjct: 859  MKAMEGLMAHYDGTIRNSNSQMIQLCYGEDGMD 891



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 64/95 (67%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
             ++ A++    E A +  L  ++ +F  +  QPGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1045 TKRMAEEHKLTEEAFEWLLGEIETRFQRAHVQPGEMVGALAAQSLGEPATQMTLNTFHYA 1104

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+EI+ + SK  KTP +T  LL
Sbjct: 1105 GVSAKNVTLGVPRLKEIINV-SKKPKTPSLTIFLL 1138



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI L  PV++      +  +++ +CF+C
Sbjct: 68  CQTCAGNMNTCPGHFGHISLTKPVFHVCFMTKIVKIMRCVCFYC 111


>gi|428672959|gb|EKX73872.1| DNA-directed RNA polymerase I, putative [Babesia equi]
          Length = 1850

 Score =  317 bits (812), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 198/524 (37%), Positives = 275/524 (52%), Gaps = 91/524 (17%)

Query: 337 IVARWMNLQQSVNVLFD-GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVI 395
           I    +NLQ+ +++  D GK          GI Q +E K G  RQ ++GKRVNY+ R+VI
Sbjct: 438 IYNHTLNLQRRLSMYMDSGKQGTSTLAQRPGIKQSMEHKSGTVRQNMLGKRVNYSARTVI 497

Query: 396 SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMR 455
           +PD ++  N++G+P  FA+ LT PE VT +NV  LR  ++NG++I+PGA    D  S  R
Sbjct: 498 APDCFMDTNQMGMPLKFAMELTIPEHVTKYNVNFLRKLVLNGSKIYPGANFLRD--SNGR 555

Query: 456 LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
           L     +  S       ++  ++  G    N    ++VYRH+ DGDV L+NRQPTLHKP 
Sbjct: 556 LYSLSTLSYS----ERVAKAKLLLTGITEGNS--PRIVYRHVLDGDVALMNRQPTLHKPG 609

Query: 516 IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
           IM H ++VL  +K  R++Y NCSTYNADFDGDEMN+H PQD +S+AEA  I NA+ Q+V 
Sbjct: 610 IMGHFIKVLTNQKIFRLNYVNCSTYNADFDGDEMNLHLPQDPLSQAEAQLIANADCQFVV 669

Query: 576 PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSF---------- 625
           P NG P+R LIQDH    ALLT K+TFL +DE+  L+Y S      L +F          
Sbjct: 670 PKNGQPIRGLIQDHCQGGALLTSKNTFLRKDEYFNLIYVS------LDAFISCSDNIYLK 723

Query: 626 ----TGKPGQRVLISRSEQEVLPLL----------------------PAIWKPEPLWTGK 659
               T +  + + I     ++   L                      PAI  P PLWTGK
Sbjct: 724 DEEDTYRICENIKIDNELYQITKRLKVMSDPFSRKFPNHGREIYIDPPAIVYPVPLWTGK 783

Query: 660 QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
           QVIT++L  +  G    +  RGG                    K  +G     N + K K
Sbjct: 784 QVITSILKTLVDGMSTDI--RGGV------------------SKGPRG----INLVSKSK 819

Query: 720 SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHT 777
           +          PG+      + +KE    E  ++I  ++L++GV+DK+QF  + YGL H 
Sbjct: 820 T----------PGDAWGGSNDGNKE----ESTIIIQNSELLQGVLDKSQFGASSYGLTHL 865

Query: 778 VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKE 821
           + EL G    G LL++ S LFT FLQMHG TC   D ++  D E
Sbjct: 866 IFELLGPRICGMLLNSFSYLFTSFLQMHGVTCSPKDFILTSDAE 909



 Score =  256 bits (654), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 148/322 (45%), Positives = 192/322 (59%), Gaps = 52/322 (16%)

Query: 889  SSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGK 948
            SS IN ++   LLK     +  ++ T GAKGSKVNF  I S L QQ LEG+RVP M S +
Sbjct: 1114 SSDINSVVDSTLLKFPENGFFGMVAT-GAKGSKVNFAMICSALSQQTLEGRRVPVMPSIR 1172

Query: 949  TLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1008
            TLPSF   D+  RAGGFI DRFLTGLRPQEY+FHCM+GREGLVDT VKT++SGYLQRC++
Sbjct: 1173 TLPSFAFGDFGSRAGGFISDRFLTGLRPQEYFFHCMSGREGLVDTCVKTAKSGYLQRCVL 1232

Query: 1009 KNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFC 1068
            K +E + + YD +VR +DGSI+QF YGEDG+DV +++++ +   + A             
Sbjct: 1233 KAMEDVIVCYDATVRGSDGSIIQFAYGEDGIDVSKSAYLDRPRDIVA------------- 1279

Query: 1069 DKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDN---AEKFADK---FLSNEM 1122
                                       N++++   +  K N   +EKF +K   F SN  
Sbjct: 1280 ---------------------------NSHLIPQDEVAKVNVEASEKFMEKMRLFTSNYQ 1312

Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
             ++  L   KH    S    G+ VG +A QS+GEP+TQMTLNTFHLAG G  NVTLGIPR
Sbjct: 1313 DQRVLLVHYKH----SQCDAGDAVGCVAGQSIGEPATQMTLNTFHLAGHGAANVTLGIPR 1368

Query: 1183 LQEILTIASKDIKTPVITCPLL 1204
            L E+L   + D  TP  +  LL
Sbjct: 1369 LIELLR-TTGDSSTPYFSATLL 1389



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C +C +    C GH GHID  VP+++PL+   L  LLK +CF+C   K  +++V K  R 
Sbjct: 63  CSSCNEMTN-CDGHLGHIDFAVPLFHPLMLPSLVKLLKTVCFYCLKLKLRKKQVLKFQRL 121

Query: 61  LELIIKG 67
            +L   G
Sbjct: 122 FDLAKAG 128


>gi|397135878|gb|AFO11434.1| RNA polymerase I, partial [Wickerhamia fluorescens]
          Length = 872

 Score =  317 bits (812), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 233/768 (30%), Positives = 364/768 (47%), Gaps = 154/768 (20%)

Query: 292  IKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVL 351
            I F   ++G D +     T  L+ VL+ANI +    ++   + + +++ +  L Q     
Sbjct: 63   IAFNDTARGEDDL-----TFKLADVLKANINVQRLEMD--GSPQHVISEFEALLQFHVAT 115

Query: 352  FDGKNAAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
            +   + AGQ        R + S I   L+ KEG  R  LMGKRV+++ R+VIS DP L +
Sbjct: 116  YMDNDIAGQPQALQKTGRPIKS-IRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDL 174

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL-DKLSTMRLPPNKKM 462
            +++G+P   A  L+YPE VTP+N+ +L + + NG   HPGA + + D    + L  NK+ 
Sbjct: 175  DQVGVPISIARTLSYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKR- 233

Query: 463  RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
                                D   ++ G  V RHL D D VL NRQP+LHK S+MAH V+
Sbjct: 234  ------------------AGDIALQY-GWKVERHLMDNDPVLFNRQPSLHKMSMMAHRVK 274

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            V+    T R++ +  S YNADFDGDEMN+H PQ   +R+E   I     Q V P +  P+
Sbjct: 275  VMP-YSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSPQSNKPV 333

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
              ++QD +     +T +D F+  D+   +LY        +  + G              V
Sbjct: 334  MGIVQDTLCGVRKMTLRDIFIEYDQVMNMLY-------WIPDWDG--------------V 372

Query: 643  LPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRK 702
            +P  PA+ KP+P+WTGKQ+++                    +P+     RF+  K     
Sbjct: 373  IP-PPAVIKPKPMWTGKQLLSMA------------------IPKGIHLQRFDGGKDMLSP 413

Query: 703  KNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRG 762
            K D G L                +V+G                            +++ G
Sbjct: 414  K-DTGML----------------IVDG----------------------------EIMFG 428

Query: 763  VIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDK 820
            V+DK        GL+HTV    G      L S + ++   +L  +GF+ G+ D +     
Sbjct: 429  VVDKKTVGATGGGLIHTVMREKGPYVCAQLFSRIQKVVNYWLLHNGFSIGIGDTIADAST 488

Query: 821  ERERKNHLHGSEEIGKRVHLEA----LELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFD 876
             R+    +  +++  + + LEA    LE E G  +     +  + + +    D A    +
Sbjct: 489  MRDVTTTIQEAKDKVQEIILEAQQNTLEPEPGMTLRE-SFEHNVSRVLNQARDTAGRSAE 547

Query: 877  MKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQEL 936
            M +                           N +  M  SG+KGS +N  Q+S+ +GQQ +
Sbjct: 548  MNLKDL------------------------NNVKQMVVSGSKGSFINISQMSACVGQQIV 583

Query: 937  EGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVK 996
            EGKR+P   S ++LP F   D++P + GF+ + +L GL PQE++FH MAGREGL+DTAVK
Sbjct: 584  EGKRIPFGFSDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVK 643

Query: 997  TSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT 1044
            T+ +GY+QR L+K LE + + YD + R++ G ++QF YGEDG+D  Q 
Sbjct: 644  TAETGYIQRRLVKALEDIMVHYDGTTRNSLGDVIQFVYGEDGIDGTQV 691


>gi|355568192|gb|EHH24473.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca mulatta]
 gi|355753712|gb|EHH57677.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca fascicularis]
          Length = 1629

 Score =  317 bits (812), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 240/824 (29%), Positives = 377/824 (45%), Gaps = 145/824 (17%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNGA-AAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
              +    I+              V RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  APSQSAWIIG-------------VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 491

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 492  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 551

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 552  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 589

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 590  LKPRPLWTGKQIFSLIIPGHIN-------------------------------------- 611

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 612  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 652

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 653  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 712

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 713  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 756

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 757  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 809

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 810  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 869

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 870  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 913



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1061 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1120

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1121 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1154



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|156086950|ref|XP_001610882.1| DNA directed RNA polymerase [Babesia bovis T2Bo]
 gi|154798135|gb|EDO07314.1| DNA directed RNA polymerase [Babesia bovis]
          Length = 2016

 Score =  317 bits (811), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 210/553 (37%), Positives = 285/553 (51%), Gaps = 95/553 (17%)

Query: 332 DNAKVIVARWMNLQQSVNVLFD----GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRV 387
           D    ++    NLQ+ V++  D    G     +     GI Q LE KEG  R  ++GKRV
Sbjct: 483 DFNSAVLNTIQNLQRKVSLYTDSSKTGSTINSKLPQRPGIKQSLEHKEGAVRHNMLGKRV 542

Query: 388 NYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY 447
           NYA R+VI+PD +L  N++GIP  FA  LT PE VT +NV  LR  +ING  I+PGA  Y
Sbjct: 543 NYAARTVIAPDCFLDSNQMGIPLMFATELTVPENVTSYNVNMLRKLLINGPRIYPGANFY 602

Query: 448 LDKLSTM----RLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVV 503
            D+   +     L  N++   +     D S G   QP          ++VYRH+ DGDVV
Sbjct: 603 RDEYGKLYNLGTLSINERKAKAKLLLTDISDGR--QP----------RVVYRHVLDGDVV 650

Query: 504 LVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEA 563
           L+NRQPTLHKP IMAH VRVL  +K  R++Y NC+TYNADFDGDEMN+H PQD ++++EA
Sbjct: 651 LMNRQPTLHKPGIMAHFVRVLTNQKIFRLNYVNCNTYNADFDGDEMNLHLPQDPLAQSEA 710

Query: 564 YNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV------ 617
             I NA+ Q+  P +G P+R LIQDH +  A LT KDTFL  +++  L+Y +        
Sbjct: 711 QIIANADCQFTVPKDGQPIRGLIQDHCLGGAYLTSKDTFLTCEQYFNLVYVALQEFFKWH 770

Query: 618 ------SSSGLGS--------------------FTGKPGQRVLISRSEQEVLPLLPAIWK 651
                 S SGL                       +    +R     +E  V    PAI  
Sbjct: 771 KTIYIRSESGLRKMDNGIQVDVQLHQLAKRLKLLSDPYARRCAHGNTEMHVEE--PAILF 828

Query: 652 PEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQ-DFFKTRFNADKQSDRKKNDKGKLS 710
           P+ LWTGKQVIT +L  I  G     + +G  +   +F +T              KG   
Sbjct: 829 PQRLWTGKQVITTLLKTIVDG-----IAKGLHMTDVNFLRTY-------------KG--- 867

Query: 711 KTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFA 770
             N   K K+          PG+      +  KE    E  ++I  ++L++GV+DK+QF 
Sbjct: 868 -INLYSKSKT----------PGDAWGGANDGCKE----ESIIIIRNSELLQGVLDKSQFG 912

Query: 771 D--YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHL 828
              YGL H V EL G   +G+LL+A S LFT FLQMHG TC   D ++  + ER R+  L
Sbjct: 913 ATPYGLTHLVYELLGPRASGSLLNAFSYLFTSFLQMHGATCSPQDFILTSEAERHRERIL 972

Query: 829 HGSEEIGKRVHLE 841
              +  G  +HL+
Sbjct: 973 RRIKHCG--IHLQ 983



 Score =  255 bits (652), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 141/299 (47%), Positives = 181/299 (60%), Gaps = 40/299 (13%)

Query: 906  KNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGF 965
            +N  + M  +GAKGSKVNF  I S L QQ LEG+RVP M S +TLPSF   D   RAGGF
Sbjct: 1199 QNGFASMVLTGAKGSKVNFSMICSILAQQSLEGRRVPVMPSVRTLPSFAFGDLGARAGGF 1258

Query: 966  IIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDA 1025
            I DRFLTGLRPQEY+FHCM+GREGLVDT VKT++SGYLQRC++K +E +   YD +VR +
Sbjct: 1259 ITDRFLTGLRPQEYFFHCMSGREGLVDTCVKTAKSGYLQRCILKAMEDVICCYDATVRSS 1318

Query: 1026 DGSIVQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIY 1085
            DG+I+QF YGEDG+DV +++++ + + +                          N  +I 
Sbjct: 1319 DGTIIQFSYGEDGIDVQKSAYLKRPNDVI------------------------ENAALI- 1353

Query: 1086 KKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEP 1145
                GQ D        LP  L+   E F +  L N+    D    +   +  S  +PGE 
Sbjct: 1354 --SLGQSD--------LPLKLE---EGFVN-LLGNKFTTDDVKATLYRHYKRSQCEPGEA 1399

Query: 1146 VGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            VG +A QS+GEP+TQMTLNTFHLAG G  NVTLGIPRL E++   +    TP  + PLL
Sbjct: 1400 VGCIAGQSIGEPATQMTLNTFHLAGHGATNVTLGIPRLVELMQ-TTGSASTPYFSAPLL 1457



 Score = 60.5 bits (145), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC Q    C GH GH++  VP+Y+PLL   L  LLK  C +C   K +R+ + K ++ 
Sbjct: 63  CSTC-QDVAACDGHLGHVNFPVPIYHPLLMPRLVKLLKSTCLYCRKLKLTRQRIVKLIKL 121

Query: 61  LELIIKG 67
            +L+  G
Sbjct: 122 FDLLHVG 128


>gi|357472549|ref|XP_003606559.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
 gi|355507614|gb|AES88756.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
          Length = 1036

 Score =  317 bits (811), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 249/768 (32%), Positives = 360/768 (46%), Gaps = 149/768 (19%)

Query: 306  EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMA- 364
            E+  T  L K++QAN  +    V         +     + Q +N   D K       M+ 
Sbjct: 124  ENDITEKLKKIIQANAIMQQESVETQKYQDAYLMLQFEVAQYINS--DVKGGPYNLQMSK 181

Query: 365  --SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERV 422
              +G  Q ++ K+G FR  L GKRV Y  R+VISPDP L + E+ IP + A  LTYPERV
Sbjct: 182  PLTGFIQRIKGKQGRFRSNLSGKRVEYTGRTVISPDPNLKITEVAIPIHMARILTYPERV 241

Query: 423  TPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGK 482
            T  N+ KLR  + NG + +PGA               + ++ + G   +     I+   +
Sbjct: 242  THHNIEKLRQCVRNGPDKYPGA---------------RMVKEAGGNSWNLK---ILTRTR 283

Query: 483  DSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNA 542
             +D    G +V RH++DGDVVL NRQP+LH+ S+M H  RV+   +TLR + + C+ YNA
Sbjct: 284  RADELKFGDIVERHIEDGDVVLFNRQPSLHRMSMMCHRARVMPW-RTLRFNESVCNPYNA 342

Query: 543  DFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTF 602
            DFDGDEMN+H PQ E +R EA  ++   N    P NG+ L +  QD + S+ L+T+KDTF
Sbjct: 343  DFDGDEMNIHVPQTEEARTEALLLMTVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTF 402

Query: 603  LNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI 662
             +R  F           S + S+ G     V         LP  PAI KP  LW+GKQ+ 
Sbjct: 403  YDRSTF-----------SLICSYMGDGMDPV--------DLP-TPAIIKPVELWSGKQLF 442

Query: 663  TAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKS-- 720
              +L      RP   V          + T    +K    K +D+ +  KT  M  D    
Sbjct: 443  NILL------RPHANVR--------VYVTLTVMEKNYGSKLDDREREFKT--MCPDDGFV 486

Query: 721  -GKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQ 779
              +  E++ G+ G+      NK                               GL   + 
Sbjct: 487  YFRNSELISGQLGKVTLGNGNKD------------------------------GLFSVLL 516

Query: 780  ELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVH 839
              Y S  A + ++ L++L   ++  HGF+ G+DD+       + +   + G E+      
Sbjct: 517  RDYKSYAAASCMNRLAKLSARWIGNHGFSIGIDDV-------QPKDKLIKGKEKT----- 564

Query: 840  LEALELEDGAEIDPIKLKSEIEKAMRG------GGDAAVAYFDMKMTSQLN--KHTSSSV 891
                 +EDG +    K    IE   +G      G DAA    + K+ S LN  + T++ V
Sbjct: 565  -----IEDGYK----KCDGYIEDFNKGELKLAPGCDAAQT-LESKIFSTLNGLRDTTAKV 614

Query: 892  INELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLP 951
              E L         +N   +M+  G+KGS +N  Q+ + +GQQ + G R       + LP
Sbjct: 615  CMETLH-------WRNSPLIMSQCGSKGSPINICQMVACVGQQSVGGCRATNGFIDRNLP 667

Query: 952  SFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA----------------- 994
             F      P A GF+ D F TGL   E++FH M GREGLVDTA                 
Sbjct: 668  HFPKKANTPDAKGFVKDSFFTGLSATEFFFHTMGGREGLVDTAVRVSAMVTLKERLYHEL 727

Query: 995  --VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
              VKT+ +GY+ R L+K LE L + YDY+VRDA+ S+VQFCYG+DG+D
Sbjct: 728  RWVKTADTGYMSRRLMKALEDLFLHYDYTVRDANCSLVQFCYGDDGMD 775


>gi|345309516|ref|XP_003428845.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1, partial
            [Ornithorhynchus anatinus]
          Length = 988

 Score =  317 bits (811), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 240/824 (29%), Positives = 377/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 183  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 233

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 234  QGSARNQDDLTHKLADIVKINNQLRRNEQNGA-AAHVIAEDVKLLQFHVATMVDNELPGL 292

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 293  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 352

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + + IG K
Sbjct: 353  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYK 412

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 413  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 448

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 449  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 508

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 509  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 546

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 547  LKPRPLWTGKQIFSLIVPGHIN-------------------------------------- 568

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 569  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 609

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +T     S +  +   +L + G T G+ D +      ++ 
Sbjct: 610  KSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDI 669

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 670  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 713

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 714  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 766

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 767  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 826

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 827  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 870



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1  CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
          C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 38 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 81


>gi|399218278|emb|CCF75165.1| unnamed protein product [Babesia microti strain RI]
          Length = 1801

 Score =  317 bits (811), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 241/804 (29%), Positives = 373/804 (46%), Gaps = 137/804 (17%)

Query: 256  ENEFELCSFIS--DMQQQGFG-KKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVL 312
            E   E+   IS  DM+  GF   ++  S   L V+ VPP   R   + G    E   T+ 
Sbjct: 251  EEALEILKRISEEDMKALGFNPARSRPSWLILTVLPVPPPSVRPYVQFGSDRSEDDLTLK 310

Query: 313  LSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD----GKNAAGQRDM--ASG 366
            L  +L+ N  L      +   A +I      LQ  +  LFD    G   A  R       
Sbjct: 311  LMDILKTNSQLKKQE-ERGVAAHIIQEMCQLLQFHITTLFDNEIPGMPVASTRSKKPIKA 369

Query: 367  ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
            I   L+ KEG  R  LMGKRV+++ R+VI+ DP + ++ IG+P   A+ LT+PE VTP N
Sbjct: 370  IRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNIPIDTIGVPKSIAMTLTFPETVTPLN 429

Query: 427  VVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN 486
               L+  +  G    PGA + +                    + D +R  +    + S+ 
Sbjct: 430  YAILKKKVEKGPHEWPGAKYIV--------------------RDDGTRYDLRHVRRPSEL 469

Query: 487  EFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
            + E G  V RH+QDGD +L NRQP+LHK SIM H  ++L    T R++ +  S YNADFD
Sbjct: 470  QLEYGYKVERHMQDGDYILFNRQPSLHKMSIMGHKAKILP-YSTFRLNLSVTSPYNADFD 528

Query: 546  GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
            GDEMN+H  Q   +R+E  +++ +  Q V P    P+  ++QD ++  +  T KDTFL+R
Sbjct: 529  GDEMNLHLAQTHEARSEIKHLMLSPKQIVSPQGNRPVMGIVQDSLLGVSKFTMKDTFLSR 588

Query: 606  DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
            D    LL       + +  + G+              +P LP I+ P+ LWTGKQVI+ +
Sbjct: 589  DVLMNLL-------TWIPYWDGR--------------VP-LPCIFYPQRLWTGKQVISIL 626

Query: 666  LNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKE 725
            L+                  Q   + + N +            L +T+            
Sbjct: 627  LS----------------FDQAHLQNQININ------------LRRTS------------ 646

Query: 726  VVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYG 783
                  G      +   +  E+ + ++ I +N+ + G I K         L+H +    G
Sbjct: 647  ------GFSSVTGQGSVRALEMIDSEVTIRQNEHLTGTICKRTVGSSSGSLIHVLWHEAG 700

Query: 784  SNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL 843
                   ++ L ++   +L   GFT    D+                   I     L+ +
Sbjct: 701  PERTKDFITTLQKVVNNWLIETGFTVSCSDI-------------------ITADTTLDMV 741

Query: 844  ELEDGAEIDPIKLKSEIEKAMRGG-----GDAAVAYFDMKMTSQLN--KHTSSSVINELL 896
                GA  D  +++  +  A RG      G +    F+ ++  +LN  +  S  ++ E L
Sbjct: 742  AESLGAAKD--RVQQLVSLAQRGKLECQPGKSLFESFEARVNKELNEAREQSGRIVAESL 799

Query: 897  SEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPW 956
             E       +N I  M  +G+KGS +N  QI + +GQQ +EGKR+P     ++LP F   
Sbjct: 800  DE-------QNNILAMVNAGSKGSSINISQIIACVGQQNVEGKRIPFGFCDRSLPHFIKH 852

Query: 957  DWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKI 1016
            D+ P + GF+ + +L+GL PQE +FH M GREG++DTA KTS +GY+QR LIK +E + +
Sbjct: 853  DYGPESRGFVSNSYLSGLTPQEMFFHAMGGREGIIDTACKTSETGYIQRRLIKAMEDIMV 912

Query: 1017 SYDYSVRDADGSIVQFCYGEDGVD 1040
             YD +VR++ G I+QF YGEDG++
Sbjct: 913  HYDGTVRNSGGDILQFLYGEDGMN 936



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 56/77 (72%), Gaps = 1/77 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
             L  V+  F LSL   GE VG +A+QS+GEP+TQMTLNTFH AG G  NVTLG+PRL+E+
Sbjct: 1113 LLGEVERHFNLSLVHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKEL 1172

Query: 1187 LTIASKDIKTPVITCPL 1203
            + + + ++KTP +T  L
Sbjct: 1173 INVVT-NVKTPSLTVHL 1188



 Score = 45.1 bits (105), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 24/44 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC      CPGHFGHI L  P+Y+      +  +L+ +C+ C
Sbjct: 70  CSTCNMDVKHCPGHFGHITLAKPMYHYGFITTVMKVLRCVCYNC 113


>gi|397135940|gb|AFO11465.1| RNA polymerase I, partial [Spencermartinsiella europaea]
          Length = 868

 Score =  316 bits (810), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 209/677 (30%), Positives = 328/677 (48%), Gaps = 130/677 (19%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VI+ DP L ++++G+P   A  LTYPE VTP+N+ +L
Sbjct: 142  LKGKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPKSIARTLTYPEIVTPYNIQRL 201

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE- 489
             + + NG   HPGA + +                  G ++D          +  D   + 
Sbjct: 202  TELVRNGPNEHPGAKYIIR---------------DTGERIDLRYHK-----RAGDIALQY 241

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G  V RH+ D D VL NRQP+LHK S+MAH V+V+    T R++ +  S YNADFDGDEM
Sbjct: 242  GWKVERHIVDDDPVLFNRQPSLHKMSMMAHRVKVMP-YSTFRLNLSVTSPYNADFDGDEM 300

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ E +RAE   I     Q V P +  P+  ++QD +     +TK+DTF++ ++  
Sbjct: 301  NLHVPQSEETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTKRDTFIDYEQVM 360

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
             +L                PG   ++ +         PAI KP P+WTGKQ+++      
Sbjct: 361  NILLWI-------------PGWDGVVPQ---------PAILKPRPMWTGKQMVSMT---- 394

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
                          +P   F  RF+                                 +G
Sbjct: 395  --------------IPSGIFLQRFD---------------------------------DG 407

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTA 787
             P    +            +  +LI K +++ GV+DK      G  L+HT+    G    
Sbjct: 408  NPISSPK------------DNGMLIQKGEIIYGVVDKKTVGATGGGLIHTIMREKGPKVC 455

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED 847
                  + ++   +L  +GF+ G+ D +      R+  N +  +++  + + LEA     
Sbjct: 456  AGFFGNIQKVVNYWLLHNGFSIGIGDTIADGATMRDIANTISEAKQKVQEIILEA----- 510

Query: 848  GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKN 907
                   KL  E    +R         F+  ++  LN+   ++  +  +S   L     N
Sbjct: 511  ----QSNKLSPEPGMTLR-------ESFEHNVSRVLNQARDNAGRSAEMSLKEL-----N 554

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
             +  M  +G+KGS +N   +S+ +GQQ +EGKR+P     ++LP F   D++P + GF+ 
Sbjct: 555  NVKQMVVAGSKGSFINISLMSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVE 614

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
            + +L GL PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD + R++ G
Sbjct: 615  NSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVQYDGTTRNSLG 674

Query: 1028 SIVQFCYGEDGVDVHQT 1044
             ++QF YGEDG+D  Q 
Sbjct: 675  DVIQFVYGEDGLDGTQV 691


>gi|68370162|ref|XP_682682.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
            [Danio rerio]
          Length = 1972

 Score =  316 bits (810), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 219/730 (30%), Positives = 340/730 (46%), Gaps = 143/730 (19%)

Query: 334  AKVIVARWMNLQQSVNVLFDGKNAAGQRDMASG------ICQLLEKKEGLFRQKLMGKRV 387
            A VI      LQ  V  + D +     R M         I Q L+ KEG  R  LMGKRV
Sbjct: 297  AHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRV 356

Query: 388  NYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY 447
            +++ R+VI+PDP L ++++G+P   A  +T+PE VTP+N+ +L++ +  G   +PGA + 
Sbjct: 357  DFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYI 416

Query: 448  L----DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVV 503
            +    D++     P    + + IG K++                       RH+ DGD++
Sbjct: 417  IRDNGDRIDLRFHPKPSDLHLQIGYKVE-----------------------RHMCDGDII 453

Query: 504  LVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEA 563
            + NRQPTLHK S+M H VR+L    T R++ +  + YNADFDGDEMN+H PQ   +RAE 
Sbjct: 454  VFNRQPTLHKMSMMGHRVRILPW-STFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEI 512

Query: 564  YNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLG 623
              +       V P +  P+  ++QD + +    TK+D FL R E   LL         L 
Sbjct: 513  QELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF-------LS 565

Query: 624  SFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL-NHITRGRPPFVVERGG 682
            ++ GK  Q               PAI KP PLWTGKQ+ + ++  HI   R         
Sbjct: 566  TWDGKVPQ---------------PAILKPRPLWTGKQIFSLIIPGHINAIR--------- 601

Query: 683  KLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK--SGKKKEVVEGKPGEEKEAEKN 740
                                         T+  H D+  SG  K +  G           
Sbjct: 602  -----------------------------THSTHPDEEDSGPYKNISPG----------- 621

Query: 741  KSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLF 798
                    + K+++   +L+ G++ K         LVH      G +      S +  + 
Sbjct: 622  --------DTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVV 673

Query: 799  TVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKS 858
              +L + G + G+ D +  K   ++ +N +  +    K+  +E +E     E++P     
Sbjct: 674  NNWLLIEGHSIGIGDSIADKATYQDIQNTIKKA----KQDVIEVIEKAHNNELEPTP--- 726

Query: 859  EIEKAMRGGGDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSG 916
                     G+     F+ ++   LN  +  + S   + LSE        N    M  +G
Sbjct: 727  ---------GNTLRQTFENQVNRILNDARDKTGSSAQKSLSE-------YNNFKSMVVAG 770

Query: 917  AKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRP 976
            +KGSK+N  Q+ + +GQQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL P
Sbjct: 771  SKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTP 830

Query: 977  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE 1036
             E++FH M GREGL+DTAVKT+ +GY+QR LIK++E + + YD +VR++   +VQ  YGE
Sbjct: 831  TEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGE 890

Query: 1037 DGVDVHQTSF 1046
            DG+      F
Sbjct: 891  DGLAGEAVEF 900



 Score = 87.4 bits (215), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            +++  ++F  +  A    L  ++ KF  S+A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1048 SKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1107

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1108 GVSAKNVTLGVPRLKELINI-SKRPKTPSLTVFLL 1141



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++      +  +L+ +CFFC
Sbjct: 69  CQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFC 112


>gi|307196534|gb|EFN78064.1| DNA-directed RNA polymerase III subunit RPC1 [Harpegnathos saltator]
          Length = 1334

 Score =  316 bits (809), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 275/966 (28%), Positives = 422/966 (43%), Gaps = 204/966 (21%)

Query: 282  FFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIV 338
              L  + VPPI  R PS   D      E P T+ LS+++  N  +   ++      ++  
Sbjct: 225  LILTRIPVPPICIR-PSVASDLKSGTNEDPLTMKLSEIIFIN-NVIQKHMQSGVKVQMYH 282

Query: 339  ARWMNLQQSVNVLFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYACRS 393
              W  LQ    +  + + +    +M       G+ Q L+ K+G FR  L GKRV+++ R+
Sbjct: 283  EDWEFLQLHCALYINSEMSGIPLNMQPKKSGRGLVQRLKGKQGRFRGNLSGKRVDFSART 342

Query: 394  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLST 453
            VISPDP L + ++G+P Y A  LTYPERV P N+  +R  I NGA++HPGA   L + + 
Sbjct: 343  VISPDPNLKIEQVGVPLYIAKILTYPERVNPANMDLMRQLIRNGADVHPGANFVLHQKTQ 402

Query: 454  MRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHK 513
             R+      R  + R+L                   G +V RHL+D D+VL NRQP+LHK
Sbjct: 403  RRMYLPYSNRNKVIRELQY-----------------GDIVERHLRDDDIVLFNRQPSLHK 445

Query: 514  PSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQY 573
             SIMAH  ++L   +T R +   C+ YNADFDGDEMN+H PQ E +RAEA  ++   +  
Sbjct: 446  LSIMAHRAKIL-NHRTFRFNECVCNPYNADFDGDEMNLHLPQTEEARAEALVLMGNKSNL 504

Query: 574  VRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRV 633
            V P NG+ L +  QD I S+ LLT+K+TFL   +   L       +  L S T  P    
Sbjct: 505  VTPRNGELLIAATQDFITSSYLLTRKNTFLTEAQAVLLANCLMNDADNLVSVTLPP---- 560

Query: 634  LISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRF 693
                         PAI KP   WTGKQ+   ++      RP                   
Sbjct: 561  -------------PAIIKPIKAWTGKQIFGLIM------RP------------------- 582

Query: 694  NADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLL 753
            N +         KGK + TN                  GEE   E          +  +L
Sbjct: 583  NEECPVKANLRTKGK-AYTN------------------GEEMCIE----------DSYVL 613

Query: 754  IYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
            I  ++L+ G +DK          + + +   +G + A   +  L+RL + ++   GF+ G
Sbjct: 614  IRNSELLAGSMDKVTLGSGTKQSIFYILLCDWGEDVATLAMWRLARLASCYITNAGFSIG 673

Query: 811  VDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEI-DPIKLKSEIEKAMR 865
            + D+     +L+ KE   KN   G ++    +     ++E+G  +  P   K E  +   
Sbjct: 674  ISDVTPGHGLLQAKEELLKN---GYDKCTNYIR----QMEEGNLVCQPGCTKEETMEVKI 726

Query: 866  GGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQ 925
                       +K  S +  H     + EL           N   +M  SG+KGS +N  
Sbjct: 727  -----------LKELSAIRDHGGKVCLKEL--------APGNSPLIMAISGSKGSFINIS 767

Query: 926  QISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMA 985
            Q+ + +GQQ + GKRVP   + ++LP +      P A GF+ + F +G+R          
Sbjct: 768  QMITCVGQQAVSGKRVPDGFNIRSLPHYARGLKTPSAKGFVENSFYSGMRR--------- 818

Query: 986  GREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY---GEDGVDVH 1042
                                 L+K+LE L   YD +VR++ G IVQ  Y   G D   + 
Sbjct: 819  ---------------------LVKSLEDLCFQYDMTVRNSMGDIVQLKYGGDGMDPTYME 857

Query: 1043 QTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMEL 1102
               +   +  +    + +   + +    G+                + Q  A +     +
Sbjct: 858  DKDWPLDYQRVLEHVKAKSPHKEEIPLDGADI-----------TDTAFQWFADSERFSSV 906

Query: 1103 PDALKDNAEKFAD------------------------KFLSNEMAKQDFLKLVKHKFVLS 1138
             + LKD+   F +                        +F  +++  ++F+     K++ +
Sbjct: 907  EEELKDDLLVFLEWVGDRITHYRQNILCHSPVALQPGRFTISQL--EEFIHTCNEKYMRA 964

Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
              +PG  VG LA+QS+GEP TQMTL TFH AG   MN+T G+PR++EI+  AS  I TPV
Sbjct: 965  RIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN-ASLKISTPV 1023

Query: 1199 ITCPLL 1204
            IT PL+
Sbjct: 1024 ITAPLM 1029



 Score = 45.8 bits (107), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 29/50 (58%)

Query: 1  CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
          C TC  +   C GHFG+IDL +PV++   F  + ++L+ IC  C H   S
Sbjct: 42 CGTCEGKLNDCAGHFGYIDLELPVFHVGYFRAIISILQTICKKCAHVMLS 91


>gi|302785289|ref|XP_002974416.1| hypothetical protein SELMODRAFT_442419 [Selaginella moellendorffii]
 gi|300158014|gb|EFJ24638.1| hypothetical protein SELMODRAFT_442419 [Selaginella moellendorffii]
          Length = 1348

 Score =  316 bits (809), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 250/770 (32%), Positives = 377/770 (48%), Gaps = 136/770 (17%)

Query: 289  VPPIKFRLPSKGGDSVM---EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
            VPP+  R PS   D+ +   E   T+ L  +++ N  +     +    AK +   W  LQ
Sbjct: 270  VPPVAIR-PSVEMDAAVGSNEDDVTIKLMHIIEQNNQIRACLESGLSIAKCMEI-WDFLQ 327

Query: 346  QSVNVLFDGKNAAGQRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
              V +  + +      +M +G       Q L+ K+G FR  L GKRV++  R+VISPDP 
Sbjct: 328  IQVAMYINSELPGLPPNMQTGKPLRGFVQRLKGKQGRFRGNLSGKRVDFTGRTVISPDPN 387

Query: 401  LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK 460
            L V+E+ +P   A  LTYPE+V+  N+ KLR  +ING E HPGA   +        P   
Sbjct: 388  LKVSEVAVPILMAQTLTYPEKVSAHNIEKLRQRVINGKEKHPGANFVV-------FPDGV 440

Query: 461  KMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHV 520
            K  +  G   D  R A       S+ ++ G +V RHL+DGD+VL NRQP+LH+ SIM H 
Sbjct: 441  KRFLKFG---DRKRIA-------SELKY-GDVVERHLEDGDIVLFNRQPSLHRMSIMCHR 489

Query: 521  VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGD 580
             RV+   +TLR + + C+ YNADFDGDEMN+H PQ E +R EA  ++   N    P NG+
Sbjct: 490  ARVMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALTLMGVQNNLCTPKNGE 548

Query: 581  PLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQ 640
             L +  QD + S+ L+T++DTF +R +F  +            S+ G   + +       
Sbjct: 549  ILVASTQDFLTSSFLITRRDTFYDRGQFALMC-----------SYMGDAVEHI------- 590

Query: 641  EVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSD 700
              LP  PAI KP  LWTGKQ+   ++      RP   +    K+  +F     N  K ++
Sbjct: 591  -DLP-TPAILKPVELWTGKQLFGVLI------RPSARI----KVFLNFVVCEKNHKKGTE 638

Query: 701  RKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLV 760
                  G +   N           E++ G+ G  K    N SK+   +          L+
Sbjct: 639  TMCPKDGYVFFKN----------SELICGQLG--KGTLGNGSKDGLFTV---------LL 677

Query: 761  RGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRL----FTVFLQMHGFTCGVDDLLI 816
            R         DYG             A + ++ L++L    F  ++  HGF+ G+DD+  
Sbjct: 678  R---------DYG----------EQAAASCMNRLAKLRHSYFARWIGNHGFSIGIDDV-- 716

Query: 817  LKDKERERKNHLHGSEEIGKRVHLEALE-LEDG--AEIDPIKLKSEIEKAMRGGGDAAVA 873
                            + G R+ +E  + + +G  A    I L ++ +  ++ G DAA  
Sbjct: 717  ----------------QPGSRLTVEKEKRIAEGYRACDKHISLFNKGQLTLQPGCDAA-Q 759

Query: 874  YFDMKMTSQLNKHTSSS---VINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
              + ++T +LNK   ++    +NEL          +N   +M+  G+KGS +N  Q+ + 
Sbjct: 760  TLESEITGELNKIREAAGQVCVNEL--------HWRNSPLIMSQCGSKGSVINISQMIAC 811

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            +GQQ + G R P     ++LP F   D  P+A GF+ + F +GL   E+ FH M GREGL
Sbjct: 812  VGQQSVSGHRAPNGFIERSLPHFPRNDKTPQAKGFVANSFYSGLTATEFIFHTMGGREGL 871

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            VDTAVKT+ +GY+ R L+K LE L   YD +VR++ G IVQ  YG+D +D
Sbjct: 872  VDTAVKTAETGYMSRRLMKALEDLSCQYDGTVRNSSGVIVQLIYGDDSMD 921



 Score =  190 bits (482), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 156/510 (30%), Positives = 243/510 (47%), Gaps = 74/510 (14%)

Query: 737  AEKN--KSKEKELSEEKLLIYKN-DLVRGVIDKAQFADY---GLVHTVQELYGSNTAGTL 790
             EKN  K  E    ++  + +KN +L+ G + K    +    GL   +   YG   A + 
Sbjct: 629  CEKNHKKGTETMCPKDGYVFFKNSELICGQLGKGTLGNGSKDGLFTVLLRDYGEQAAASC 688

Query: 791  LSALSRL----FTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALE-L 845
            ++ L++L    F  ++  HGF+ G+DD+                  + G R+ +E  + +
Sbjct: 689  MNRLAKLRHSYFARWIGNHGFSIGIDDV------------------QPGSRLTVEKEKRI 730

Query: 846  EDG--AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSS---VINELLSEGL 900
             +G  A    I L ++ +  ++ G DAA    + ++T +LNK   ++    +NEL     
Sbjct: 731  AEGYRACDKHISLFNKGQLTLQPGCDAA-QTLESEITGELNKIREAAGQVCVNEL----- 784

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
                 +N   +M+  G+KGS +N  Q+ + +GQQ + G R P     ++LP F   D  P
Sbjct: 785  ---HWRNSPLIMSQCGSKGSVINISQMIACVGQQSVSGHRAPNGFIERSLPHFPRNDKTP 841

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
            +A GF+ + F +GL   E+ FH M GREGLVDTAVKT+ +GY+ R L+K LE L   YD 
Sbjct: 842  QAKGFVANSFYSGLTATEFIFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSCQYDG 901

Query: 1021 SVRDADGSIVQFCYGED-----------GVDVHQTSFISKFDALAARERGRGRG------ 1063
            +VR++ G IVQ  YG+D           G  ++    + K  A   R             
Sbjct: 902  TVRNSSGVIVQLIYGDDSMDPVSMEGQNGTPLNLDRVLMKAKATCPRGATPALPPSELWK 961

Query: 1064 --RNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKD-------NAEKFA 1114
               +KF   GS   +   +   + K    + D  ++    L   L+D       N     
Sbjct: 962  IVESKFSQDGSECSMAFLDS--LRKFLRKEFDTISSTRKRLSLPLEDFGNLDDENVAANV 1019

Query: 1115 DKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEM 1174
                S ++  + FL     ++      PG  VG + +QS+GEP TQMTL TFH AG   M
Sbjct: 1020 SGLTSRQL--EVFLNTCIGRYHRKKLDPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASM 1077

Query: 1175 NVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            N+TLG+PR++EI+  ASK I TP+IT  L+
Sbjct: 1078 NITLGVPRIKEIIN-ASKKISTPIITAKLV 1106



 Score = 44.3 bits (103), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRIC---FFCHHFKASRREVEKC 57
           C TC  +   CPGHFG+I L +PV++   F  +  +L+ IC   F      AS+ E +K 
Sbjct: 85  CTTCDGKLADCPGHFGYIKLELPVFHIGYFKDIIVILQCICKASFSFLEVVASQEERQKW 144

Query: 58  VRKLE 62
            R+++
Sbjct: 145 QRRMQ 149


>gi|398398966|ref|XP_003852940.1| DNA-directed RNA polymerase II subunit RPB1 [Zymoseptoria tritici
            IPO323]
 gi|339472822|gb|EGP87916.1| hypothetical protein MYCGRDRAFT_99873 [Zymoseptoria tritici IPO323]
          Length = 1773

 Score =  315 bits (808), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 217/679 (31%), Positives = 332/679 (48%), Gaps = 139/679 (20%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VI+ DP L ++++G+P   A  LT+PERVT +N+ K+
Sbjct: 342  LKSKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPRSTARVLTFPERVTVYNIHKM 401

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE- 489
            ++ + NG + HPGA H +                    + D SR  +    +  + + + 
Sbjct: 402  QELVRNGPDQHPGAKHVI--------------------REDGSRIDLRYHKRAGEIQLQL 441

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G +V RH+ DGD ++ NRQP+LHK S+M H V+V+    T RM+ +  S YNADFDGDEM
Sbjct: 442  GWIVERHIVDGDYIIFNRQPSLHKESMMGHRVKVMP-YSTFRMNLSVTSPYNADFDGDEM 500

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ   +RAE  N+    +  V P    PL  ++QD +    ++TKKD  ++  E  
Sbjct: 501  NLHVPQGHETRAEVANLCAVPHNIVSPQKNGPLMGIVQDTMAGCWMMTKKDVMIDYQELM 560

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
             +L                     L   S   V+P  PAI KP+P WTGKQV +      
Sbjct: 561  NIL---------------------LWVPSWDGVVP-PPAIIKPQPRWTGKQVASLFF--- 595

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
                PP +         ++F     A K  D                             
Sbjct: 596  ----PPGL---------NYF---MPASKNDD----------------------------- 610

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTA 787
             P EEK              +++L+   +++ G I K     +  G+VH +    G   A
Sbjct: 611  NPHEEK--------------KEILVQNGEIMWGRIWKQVVGASQSGVVHYIFNDRGPEAA 656

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED 847
                S   R+   ++  HGF+ G+ D +          +H+ G  EI   +  E L+++ 
Sbjct: 657  VEFFSGCQRIVCHWMLHHGFSVGIGDTI--------PDDHMVG--EIEGAIVEEKLQVDK 706

Query: 848  GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEG-----LLK 902
              E    +++S+  + + G          M +       T +++ N     G     L+K
Sbjct: 707  YVE----QVQSDAMETLPG----------MTIRETFESQTKAALDNARNKAGDAAFALMK 752

Query: 903  PTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRA 962
                N + +M  SG+KGS  N  Q+++ +GQQ LEGKR+P     + LP F   D++P +
Sbjct: 753  SC--NNVGVMVNSGSKGSSTNVSQMTAAVGQQSLEGKRLPFGFKYRVLPHFPKDDYSPAS 810

Query: 963  GGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSV 1022
             GF+ + +L GL PQE++FH M GREGL+DTAVKT+ +GY+QR L+K LE + I YD +V
Sbjct: 811  RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEEIMIKYDGTV 870

Query: 1023 RDADGSIVQFCYGEDGVDV 1041
            R++ G I+QF YGEDG+D 
Sbjct: 871  RNSLGDILQFTYGEDGLDA 889



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 60/78 (76%), Gaps = 1/78 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            N++A  + L  ++++F+ +L  PGE VG+LA+QS+GEP+TQMTLNTFHLAG      T G
Sbjct: 1054 NKLALDNVLGDLENRFLRALVNPGEMVGVLAAQSIGEPATQMTLNTFHLAGVTAKTTTKG 1113

Query: 1180 IPRLQEILTIASKDIKTP 1197
            +PRL+EIL +A ++IKTP
Sbjct: 1114 VPRLKEILNVA-ENIKTP 1130



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 18/117 (15%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRR-------- 52
           C TCG+ Q  CPGHFGHI+L  PV++      +  +L+ +C  C       R        
Sbjct: 67  CATCGESQQECPGHFGHIELAAPVFHVGFITKIKKILESVCNNCGKLLEDERNPQFAQAV 126

Query: 53  EVEKCVRKLELIIKGDIIAAKSLD--LDLPSESS-----NPEDSDVSNKSSCSMVTP 102
           ++    R+ E I K   +    +D  +D P++++     +P+   ++    C  V P
Sbjct: 127 KIRDPKRRFEQIAK---LCKSKMDCAMDEPADANDGFGEDPKKPKIAGHGGCGNVQP 180


>gi|409193803|gb|AFV31135.1| RNA polymerase II largest subunit [Amoeboaphelidium protococcarum]
          Length = 1767

 Score =  315 bits (808), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 227/753 (30%), Positives = 350/753 (46%), Gaps = 142/753 (18%)

Query: 301  GDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG- 359
            G S  E   T  L+ +++AN  L N   + P +   I+A +  L Q   V +   + +G 
Sbjct: 261  GASRGEDDLTYKLADIIKANQNLKNHVDDSPAH---IIAEYEALLQYHVVTYMNNDVSGI 317

Query: 360  -QRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             Q    SG     I   L+ KEG  R  LMGKRV+++ R+VI+ DP ++++E+G+P   A
Sbjct: 318  PQATQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNISLDEVGVPRTIA 377

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTS 473
              LT+PE VTP+N  +L++++ NG   HPGA + + +                G ++D S
Sbjct: 378  KTLTFPEIVTPFNFQQLQEAVDNGPNEHPGARYVIRQ---------------NGDRIDLS 422

Query: 474  RGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH 533
            R   ++   +      G  V RH++DGD+VL NRQP+LHK S+M H VRV+    T R++
Sbjct: 423  RAGAIELQLNV-----GDKVERHIRDGDIVLFNRQPSLHKMSMMGHRVRVMP-YSTFRLN 476

Query: 534  YANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSA 593
             +  S YNADFDGDEMN+H PQ   ++AE   I     Q V P    P+  ++QD +   
Sbjct: 477  LSVTSPYNADFDGDEMNLHVPQSYETKAELSEICMVPRQIVSPQANRPVMGIVQDTLCGV 536

Query: 594  ALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPE 653
               TK+D+FL ++    L                      +  R     LP  PAI KP 
Sbjct: 537  RKFTKRDSFLTKEMVMSL---------------------CMWVRDWDGQLP-QPAIIKPV 574

Query: 654  PLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTN 713
            PLWTGKQ+ + ++       PP                                    TN
Sbjct: 575  PLWTGKQIFSLII-------PP-----------------------------------GTN 592

Query: 714  KMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--AD 771
             +         E  +  PG+ K                ++IY  +LV G+I K     + 
Sbjct: 593  MIGYHSQHPDNESSDISPGDTK----------------VVIYDGELVCGIICKKTVGTSQ 636

Query: 772  YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL----ILKDKERERKNH 827
              L+H + + +G             +   +L  +GF+ G+ D +     ++       N 
Sbjct: 637  NSLIHVIWKEHGPEKTRNFFDGCQAVVNNWLFSYGFSIGIGDTIADAQTMQVVATTISNA 696

Query: 828  LHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHT 887
             +   E   + H   L+   G  I     +S + + +    D A A             +
Sbjct: 697  KNKVTEYISQAHRNVLQPSPGMTIQE-SFESRVNQELNRARDIAGA-------------S 742

Query: 888  SSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSG 947
            +   +N+            N +  M  +G+KGS +N  Q+++ +GQQ +EG+R+P     
Sbjct: 743  AQKSLND-----------ANNVKQMVVAGSKGSFINISQMTACVGQQNVEGRRIPFGFKY 791

Query: 948  KTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL 1007
            +TLP F   D +P + GF+ + +L GL P E +FH M GREGL+DTAVKT+ +GY+QR L
Sbjct: 792  RTLPHFTKDDQSPESRGFVENSYLRGLTPSELFFHAMGGREGLIDTAVKTAETGYIQRRL 851

Query: 1008 IKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            +K LE + + YD SVR+A G ++QF YGEDG+D
Sbjct: 852  VKALEDVSVGYDCSVRNALGQVLQFAYGEDGMD 884



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 5/119 (4%)

Query: 1087 KCSGQL--DASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGE 1144
            KC+ +L  +AS  + + L   L    ++   +F   + A    L  ++ KF  S+  P E
Sbjct: 1018 KCTAELKENASLLFRILLRSVLA--TKRILQEFHLTKAAFSWILGEIESKFHQSMVAPNE 1075

Query: 1145 PVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
             VG +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ +A ++ KTP  T  L
Sbjct: 1076 MVGTIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVA-RNNKTPSTTIYL 1133


>gi|443918878|gb|ELU39223.1| DNA-directed RNA polymerase II largest subunit [Rhizoctonia solani
            AG-1 IA]
          Length = 1531

 Score =  315 bits (808), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 209/673 (31%), Positives = 330/673 (49%), Gaps = 125/673 (18%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VI+ DP L ++E+G+P   A+ LTYPERVTP+N+  L
Sbjct: 219  LKGKEGRLRGNLMGKRVDFSARTVITGDPNLMLDEVGVPRSMAMNLTYPERVTPYNIEWL 278

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
            +  + NG   +PGA + +           +++ +   ++ DTS                G
Sbjct: 279  QMLVRNGPREYPGARYVVRD-------SGERIDLRYNKRADTSLQY-------------G 318

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
             +V RHL++GD VL NRQP+LHK S+M+H V+++    T R++ +    YNADFDGDEMN
Sbjct: 319  WIVERHLKNGDYVLFNRQPSLHKMSMMSHRVKIMP-YSTFRLNLSVTPPYNADFDGDEMN 377

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E +RAE   I     Q + P    P+  ++QD +     +T +D FL+ + F Q
Sbjct: 378  MHIPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKITLRDNFLDWN-FVQ 436

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVIT-AVLNHI 669
                                  +L+   E +    +P I KP+PLWTGKQ+++  + + I
Sbjct: 437  ---------------------NILLWVPEWDGQVPVPTILKPKPLWTGKQILSLCIPSGI 475

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
               R P   +R  ++P +                ND G                      
Sbjct: 476  NVFRAPDKDKRTNRVPAN--------------PANDDG---------------------- 499

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTA 787
                                  + I   +++ GV++K     +  GL+H      G    
Sbjct: 500  ----------------------ICIENGEILYGVVEKKTVGASQAGLIHITFREKGPEIT 537

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED 847
              L ++L ++   +L  +GF+ G+ D +  KD   +   H+  ++          L+L  
Sbjct: 538  RDLFTSLQKVVNFWLLHNGFSIGIGDTIADKDTMSKITIHIETAKN-------NVLQLIQ 590

Query: 848  GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKN 907
             A+ D   L++E    +R   ++ V         +  K    S+ N+            N
Sbjct: 591  KAQYD--GLRAEPGMTIRESFESHVNRELNMARDKTGKDAQDSLKND------------N 636

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
             +  M  +G+KGS +N  Q+S  +GQQ +EGKR+P     +TLP F+  D+   + GF+ 
Sbjct: 637  NVKQMVVAGSKGSFINISQMSGCVGQQSVEGKRIPFGFKHRTLPHFNKDDYCAESRGFVE 696

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
            + +L GL PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K +E + + YD +VR++ G
Sbjct: 697  NSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDIAVCYDGTVRNSLG 756

Query: 1028 SIVQFCYGEDGVD 1040
             IVQF YGEDG+D
Sbjct: 757  DIVQFAYGEDGMD 769



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 60/85 (70%), Gaps = 4/85 (4%)

Query: 1122 MAKQDF---LKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTL 1178
            + KQ F   +  V+ KF  S+  PGE  G LA+QS+GEP+TQMTLNTFH AG    NVTL
Sbjct: 934  LTKQAFDWIIGEVETKFNASIVNPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTL 993

Query: 1179 GIPRLQEILTIASKDIKTPVITCPL 1203
            G+PRL+EI+ +A+ +IKTP +T  L
Sbjct: 994  GVPRLKEIINVAT-NIKTPSLTVYL 1017


>gi|326672374|ref|XP_003199653.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Danio rerio]
          Length = 1921

 Score =  315 bits (808), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 219/730 (30%), Positives = 340/730 (46%), Gaps = 143/730 (19%)

Query: 334  AKVIVARWMNLQQSVNVLFDGKNAAGQRDMASG------ICQLLEKKEGLFRQKLMGKRV 387
            A VI      LQ  V  + D +     R M         I Q L+ KEG  R  LMGKRV
Sbjct: 297  AHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRV 356

Query: 388  NYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY 447
            +++ R+VI+PDP L ++++G+P   A  +T+PE VTP+N+ +L++ +  G   +PGA + 
Sbjct: 357  DFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYI 416

Query: 448  L----DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVV 503
            +    D++     P    + + IG K++                       RH+ DGD++
Sbjct: 417  IRDNGDRIDLRFHPKPSDLHLQIGYKVE-----------------------RHMCDGDII 453

Query: 504  LVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEA 563
            + NRQPTLHK S+M H VR+L    T R++ +  + YNADFDGDEMN+H PQ   +RAE 
Sbjct: 454  VFNRQPTLHKMSMMGHRVRILPW-STFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEI 512

Query: 564  YNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLG 623
              +       V P +  P+  ++QD + +    TK+D FL R E   LL         L 
Sbjct: 513  QELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF-------LS 565

Query: 624  SFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL-NHITRGRPPFVVERGG 682
            ++ GK  Q               PAI KP PLWTGKQ+ + ++  HI   R         
Sbjct: 566  TWDGKVPQ---------------PAILKPRPLWTGKQIFSLIIPGHINAIR--------- 601

Query: 683  KLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK--SGKKKEVVEGKPGEEKEAEKN 740
                                         T+  H D+  SG  K +  G           
Sbjct: 602  -----------------------------THSTHPDEEDSGPYKNISPG----------- 621

Query: 741  KSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLF 798
                    + K+++   +L+ G++ K         LVH      G +      S +  + 
Sbjct: 622  --------DTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVV 673

Query: 799  TVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKS 858
              +L + G + G+ D +  K   ++ +N +  +    K+  +E +E     E++P     
Sbjct: 674  NNWLLIEGHSIGIGDSIADKATYQDIQNTIKKA----KQDVIEVIEKAHNNELEPTP--- 726

Query: 859  EIEKAMRGGGDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSG 916
                     G+     F+ ++   LN  +  + S   + LSE        N    M  +G
Sbjct: 727  ---------GNTLRQTFENQVNRILNDARDKTGSSAQKSLSE-------YNNFKSMVVAG 770

Query: 917  AKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRP 976
            +KGSK+N  Q+ + +GQQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL P
Sbjct: 771  SKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTP 830

Query: 977  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGE 1036
             E++FH M GREGL+DTAVKT+ +GY+QR LIK++E + + YD +VR++   +VQ  YGE
Sbjct: 831  TEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGE 890

Query: 1037 DGVDVHQTSF 1046
            DG+      F
Sbjct: 891  DGLAGEAVEF 900



 Score = 87.4 bits (215), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            +++  ++F  +  A    L  ++ KF  S+A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1048 SKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1107

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1108 GVSAKNVTLGVPRLKELINI-SKRPKTPSLTVFLL 1141



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++      +  +L+ +CFFC
Sbjct: 69  CQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFC 112


>gi|431894008|gb|ELK03814.1| DNA-directed RNA polymerase II subunit RPB1 [Pteropus alecto]
          Length = 1975

 Score =  315 bits (807), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 240/824 (29%), Positives = 376/824 (45%), Gaps = 150/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
                                 K+V RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  ACN------------------KLVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 486

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 487  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 546

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 547  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 584

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 585  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 606

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 607  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 647

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 648  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 707

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 708  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 751

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 752  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 804

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 805  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 864

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 865  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 908



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1056 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1115

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1116 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1149



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|395836506|ref|XP_003791195.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Otolemur
            garnettii]
          Length = 1970

 Score =  315 bits (807), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 239/824 (29%), Positives = 376/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + + IG K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|428671620|gb|EKX72538.1| DNA-directed RNA polymerase II largest subunit, putative [Babesia
            equi]
          Length = 1733

 Score =  315 bits (806), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 243/796 (30%), Positives = 365/796 (45%), Gaps = 148/796 (18%)

Query: 265  ISDMQQQGFG-KKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL 323
            I DM+  GF  +++  S   L V+ VPP   R   + G    E   T+ L  +++ N  L
Sbjct: 218  IEDMRYLGFTPERSQPSWLILQVLPVPPPAVRPYVQYGSDRSEDDLTLKLLDIVKTN-NL 276

Query: 324  ANAYVNQPDNAKVIVARWMNLQQSVNVLFD----GKNAAGQRDM--ASGICQLLEKKEGL 377
               +  +     ++      LQ  +  LFD    G   A  R       I   L+ KEG 
Sbjct: 277  IKRHDKRATAPHIVQEMAQLLQFHITTLFDNDIPGMPIASTRSKKPIKSIRARLKGKEGR 336

Query: 378  FRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIING 437
             R  LMGKRV+++ R+VI+ DP L ++ IG+P   A+ LT+ E VTP N   LR  +  G
Sbjct: 337  LRGNLMGKRVDFSARTVITGDPNLPIDTIGVPKSIAMTLTFSETVTPLNFESLRRRVEVG 396

Query: 438  AEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRH 496
                PGA + +                    + D ++  +    K S+ + E G  V RH
Sbjct: 397  PHDWPGAKYII--------------------RDDGTKFDLRHVKKASELQLEYGYKVERH 436

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +QDGD +L NRQP+LHK SIM H  ++L    T R++ +  + YNADFDGDEMN+H  Q 
Sbjct: 437  MQDGDYILFNRQPSLHKMSIMGHRAKILP-YSTFRLNLSVTTPYNADFDGDEMNLHLVQT 495

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
              +RAE  +++    Q V P    P+  ++QD ++  +  TK+D FL +DE   LL    
Sbjct: 496  HETRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSLLGISKFTKRDCFLTKDELMNLLM--- 552

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                 +  + GK  Q               P I+ P+PLWTGKQVIT +L          
Sbjct: 553  ----WVPYWDGKLPQ---------------PCIFHPQPLWTGKQVITVMLTF-------- 585

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                                       +    L+  N M      +   +  GK  +   
Sbjct: 586  ---------------------------DQSQSLTNINLM------RDAGISRGK--DNPY 610

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSAL 794
              +N SK        ++I KN+ + GVI K     +   L+H +    G       L+ +
Sbjct: 611  CSENDSK--------VIIRKNEHLCGVICKRTVGCSSGSLIHVLWHEAGPERCKDFLTTV 662

Query: 795  SRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
             ++   +   +GFT    D+                SE    RV  E LE          
Sbjct: 663  QKVVNAWFVHNGFTVSCSDIT--------------ASESTLSRV-AEVLE---------- 697

Query: 855  KLKSEIEK----AMRGG-----GDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKP 903
            + K E+++    A RG      G +    F+ ++  +LN  +  S ++  + L E     
Sbjct: 698  RSKKEVQRLVGLAQRGKLKCQPGKSLFESFEARVNKELNDAREQSGTIAAQSLDE----- 752

Query: 904  TGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAG 963
              +N I  M  SG+KGS +N  QI + +GQQ +EGKR+P     ++LP F   D+ P + 
Sbjct: 753  --RNNILAMVNSGSKGSTINISQIIACVGQQNVEGKRIPFGFRDRSLPHFIKHDYGPESR 810

Query: 964  GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
            GF+ + +L+GL PQE +FH M GREG++DTA KTS +GY+QR LIK +E + + YD + R
Sbjct: 811  GFVSNSYLSGLTPQEMFFHAMGGREGIIDTACKTSETGYVQRRLIKAMEDIMVQYDKTAR 870

Query: 1024 DADGSIVQFCYGEDGV 1039
            +  G I+QF YGEDG+
Sbjct: 871  NGGGDILQFLYGEDGM 886



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 57/80 (71%), Gaps = 1/80 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
             L  ++  F  S+A PGE VG +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+E+
Sbjct: 1063 LLGEIERHFYKSIAHPGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKEL 1122

Query: 1187 LTIASKDIKTPVITCPLLVG 1206
            + +  +++KTP +T  L  G
Sbjct: 1123 INVV-RNVKTPSLTIHLEEG 1141


>gi|126309152|ref|XP_001364837.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
            [Monodelphis domestica]
          Length = 1970

 Score =  315 bits (806), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 239/824 (29%), Positives = 376/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIVPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +T     S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|126309154|ref|XP_001364909.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
            [Monodelphis domestica]
          Length = 1932

 Score =  315 bits (806), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 239/824 (29%), Positives = 376/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIVPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +T     S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|324500036|gb|ADY40031.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
          Length = 1840

 Score =  315 bits (806), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 233/766 (30%), Positives = 359/766 (46%), Gaps = 137/766 (17%)

Query: 289  VPPIKFRLPSKG--GDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQ 346
            VPP+  R P+    G +  +   T  LS ++ AN  L     N    A VI      LQ 
Sbjct: 268  VPPLAVR-PAVATFGSARNQDDLTHKLSDIVNANNQLKRNERNGA-AAHVIADDLKLLQY 325

Query: 347  SVNVLFDGK-------NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDP 399
             V    D            G R + S + Q L+ KEG  R  LMGKRV+++ R+VI+PDP
Sbjct: 326  HVATFIDNSVPGLPTATQKGGRPLKS-LKQRLKGKEGRIRGNLMGKRVDFSARTVITPDP 384

Query: 400  YLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPN 459
             L ++ +G+P   A  +T+PE VTP+N+ +L++ +  G   +PGA + +          +
Sbjct: 385  NLPIDTVGVPRTIAQNMTFPEIVTPFNIDELQELVNRGDAQYPGAKYVIR---------S 435

Query: 460  KKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAH 519
               R+ + R    +   ++QPG           V RH++DGD+++ NRQPTLHK S+M H
Sbjct: 436  NGERVDL-RYHPRASDLVIQPGYK---------VERHMRDGDIIVFNRQPTLHKMSMMGH 485

Query: 520  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNG 579
             V++L    T R++ +  + YNADFDGDEMN+H PQ   ++AE   I     Q + P   
Sbjct: 486  KVKILPW-STFRLNLSVTTPYNADFDGDEMNLHLPQSLETKAEIAEIAMVPRQLITPQAN 544

Query: 580  DPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSE 639
             P+  ++QD + +  +LTK+DTF+       LL         +  +  K  Q        
Sbjct: 545  KPVMGIVQDALTAVYMLTKRDTFIEAARLMDLLMH-------MPDWNAKIPQ-------- 589

Query: 640  QEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQS 699
                   PAI KP+ LWTGKQ+ + ++                           N +   
Sbjct: 590  -------PAILKPKRLWTGKQLFSLII-----------------------PGEVNVELNH 619

Query: 700  DRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDL 759
                +D            + +G+ K +    PG+ K                +L+ +  L
Sbjct: 620  STHPDD------------ENAGEYKWI---SPGDTK----------------VLVERGVL 648

Query: 760  VRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLIL 817
            + G+I           L+H V    G + A    S +      +L   G T G+ D +  
Sbjct: 649  LSGIICSRTVGRSAGSLLHVVTLELGFDVAAQFYSQIQTTANAWLLAEGQTIGIADAIA- 707

Query: 818  KDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDM 877
                 +R  + H  E I K+  ++ +E+ + A  D IK+           G+  +  F+ 
Sbjct: 708  -----DRATYSHIQETI-KKAKMDVVEVIERARKDSIKVTR---------GNTLLQTFES 752

Query: 878  KMTSQLNK---HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
            K+ + LN     T SS    L        +  N    M  +G+KGSK+N  Q+ + +GQQ
Sbjct: 753  KINNILNNARDRTGSSAQRSL--------SADNNFKAMVVAGSKGSKINISQVIACVGQQ 804

Query: 935  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
             +EGKR+P     +TLP F   D  P A GF+ + +L GL P E++FH M GREGL+DTA
Sbjct: 805  NVEGKRIPFGFRHRTLPHFIRDDCGPEAKGFVENSYLAGLTPSEFFFHAMGGREGLIDTA 864

Query: 995  VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            VKT+ +GY+QR L+K +E + ++YD +VR+A G +VQ  YGEDG+D
Sbjct: 865  VKTAETGYIQRRLMKAMESIMVNYDGTVRNALGEVVQLSYGEDGLD 910



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 56/80 (70%), Gaps = 1/80 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
             L  ++ +F  ++  PGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI
Sbjct: 1081 LLGEIESRFNRAIVYPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEI 1140

Query: 1187 LTIASKDIKTPVITCPLLVG 1206
            + + SK  KTP +T  L  G
Sbjct: 1141 INV-SKKPKTPSLTIFLAPG 1159



 Score = 49.3 bits (116), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 10/74 (13%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS------RREV 54
           C TC   Q  CPGHF HI L  PV++  L +    +L+ +CF+C     S      RR +
Sbjct: 95  CTTCCGGQADCPGHFAHITLAKPVFHVGLVSKTLKVLRCVCFYCSRVLVSKNNERVRRIL 154

Query: 55  EKCV----RKLELI 64
            K      R+ ELI
Sbjct: 155 SKTTGNPRRRFELI 168


>gi|83320436|gb|ABC02845.1| RNA polymerase II largest subunit, partial [Entomophthora muscae]
          Length = 1007

 Score =  315 bits (806), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 223/692 (32%), Positives = 330/692 (47%), Gaps = 138/692 (19%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VI+ DP L++NE+G+P   A  LT+PE VT +N  K+
Sbjct: 254  LKGKEGRIRGNLMGKRVDFSARTVITGDPMLSINEVGVPFSIARNLTFPEMVTSYNFEKM 313

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
            ++ + NG   HPGA + +          +  +RI +  +  T   A+            G
Sbjct: 314  QNLVRNGPTQHPGAKYVIR---------DDGVRIDLRHRRATGDMALQV----------G 354

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RH+ +GDVV+ NRQP+LHK S+M H VRVL    T R++ +  S YNADFDGDEMN
Sbjct: 355  FCVERHIDNGDVVIFNRQPSLHKMSMMGHHVRVLPF-STFRLNLSVTSPYNADFDGDEMN 413

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ   +R+E   ++  + Q V P    P+  ++QD +      TK+D FL++ EF Q
Sbjct: 414  MHVPQSHEARSEVLELMMVSKQIVSPQGNKPVMGIVQDSLCGVRKFTKRDCFLSK-EFVQ 472

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
             L                    VL        +P  P I  P PLWTGKQ+++ +     
Sbjct: 473  NL--------------------VLWIPDWNGYIP-PPCIQFPVPLWTGKQLLSLL----- 506

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                         +P     T F+A    D K             +      + E+V G 
Sbjct: 507  -------------IPTGINMTTFHAAHPDDEKS------------YISPGDTRVEIVNG- 540

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAG 788
                                       +++ G+I K     A  GL+HT+    G     
Sbjct: 541  ---------------------------EIIAGIICKRTVGAAAGGLIHTIYNELGEVPTT 573

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
              L+    L   +   + F+  + D++     +RE    ++ S    K            
Sbjct: 574  RFLNGTQTLVNYWFMQNSFSIAIGDMI----ADRETMKKVNQSIADAK------------ 617

Query: 849  AEIDPIKLKSEIEKAMRGG-----GDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKP 903
                 I++   IE+A RG      G      F+ ++   LNK    +   ++    L  P
Sbjct: 618  -----IEVARCIEEAQRGTLQPLPGLTVREAFESRVNQALNKARDDA--GKMAERSL--P 668

Query: 904  TGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAG 963
               N I  M  SG+KGS VN  Q+++ +GQQ +E  R+P     +TLP F  +D  P + 
Sbjct: 669  EYNN-IKQMVVSGSKGSFVNISQMAACVGQQNVESARIPFGFQNRTLPHFTKYDQGPVSR 727

Query: 964  GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
            GF+ + +L GL PQE++FH M GREGL+DTAVKT+ +GY+QR L+K LE + ++YD +VR
Sbjct: 728  GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVNYDGTVR 787

Query: 1024 DADGSIVQFCYGEDGVDVHQTSFISK--FDAL 1053
            ++ G IVQFCYGEDG+D    +FI K  FD L
Sbjct: 788  NSLGQIVQFCYGEDGMD---AAFIEKQRFDNL 816


>gi|12642616|gb|AAK00312.1|AF315822_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monoblepharis
            macrandra]
          Length = 1603

 Score =  314 bits (805), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 245/823 (29%), Positives = 381/823 (46%), Gaps = 157/823 (19%)

Query: 236  DLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVL-VPPIKF 294
            DL   PLLP  V+ I+ ++ +         +D    G   +     + +  VL VPP + 
Sbjct: 131  DLAPRPLLPDQVQKILLQISD---------ADCVSLGLNPEWSRPEWMIITVLPVPPPQV 181

Query: 295  RLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDN----AKVIVARWMNLQQSVNV 350
            R PS  GD      Q  L  K+  A+I  ANA + + +       V+   W  LQ  V  
Sbjct: 182  R-PSVVGDGTGLRSQDDLTYKL--ADILKANASLKRHEQDGGPTHVVNEFWDLLQYHVAT 238

Query: 351  LFDGKNAA-------GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
            + D + +        G R +  GI Q L+ KEG  R  LMGKRV+++ R+VI+ DP +++
Sbjct: 239  MMDNQISGLPVAQQKGGRPI-KGIRQRLKGKEGRLRGNLMGKRVDFSARTVITGDPNISI 297

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPN 459
            +E+G+P      LT+PE V  +N   L+  + NG   +PGA   +    D +S      +
Sbjct: 298  DEVGVPRSICRNLTFPEIVNDYNRDHLQKLVANGTNEYPGANRVIRANGDIVSLKHTAGS 357

Query: 460  KKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAH 519
             +  ++IG +++                       RHL DGD ++ NRQP+LHK S+M H
Sbjct: 358  GETLLNIGDRVE-----------------------RHLVDGDYIIFNRQPSLHKMSMMGH 394

Query: 520  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNG 579
             VRV+    T R++ +  S YNADFDGDEMN+H PQ   +RAE   I+    Q + P + 
Sbjct: 395  KVRVMPF-STFRLNLSVTSPYNADFDGDEMNLHAPQSYETRAEIMEIMRVPRQIISPKHN 453

Query: 580  DPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSE 639
             P+  ++QD +      T +D FL+RD    +L                     +     
Sbjct: 454  QPVMGIVQDTLCGIRKFTIRDNFLSRDMVMNIL---------------------MWVEDW 492

Query: 640  QEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQS 699
              V+P LPAI KP PLWTGKQ+++  +                    D     F+A    
Sbjct: 493  DGVIP-LPAIVKPVPLWTGKQMMSLAI-------------------PDINLVGFSATHPD 532

Query: 700  DRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDL 759
            D    +KG +S          G  K ++EG                             +
Sbjct: 533  D----EKGDMS---------VGDTKVIIEG---------------------------GTI 552

Query: 760  VRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLIL 817
            + G + K        G++HT+   +G + A    +   ++   +L  +GF+ G+ D +  
Sbjct: 553  LSGTMCKKTVGSSAGGVIHTIMNEHGPDAAKKFFNGTQKIVNYWLLHNGFSVGIGDTI-- 610

Query: 818  KDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDM 877
                      +    +  K+   +  E+   A+ +  KL +E    +R         F+ 
Sbjct: 611  -----ADGVTMQSITDTIKKAKADVAEIIKNAQAN--KLDAEPGMTVR-------ETFES 656

Query: 878  KMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELE 937
            K+   LNK    +      +E  LK    N +  M  +G+KGS +N  Q+++ +GQQ +E
Sbjct: 657  KVNKVLNKARDDAGKK---AEKSLKIY--NNVKQMVIAGSKGSFINISQMTACVGQQNVE 711

Query: 938  GKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKT 997
            GKR+P     +TLP F   D +P + GF+ + +L GL PQE++FH M GREGL+DTAVKT
Sbjct: 712  GKRIPYGFRYRTLPHFTKDDHSPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKT 771

Query: 998  SRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            + +GY+QR L+K LE + + YD +VR++ G +VQF YGEDG+D
Sbjct: 772  AETGYIQRRLVKALEDVMVKYDGTVRNSLGHVVQFVYGEDGMD 814



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 55/77 (71%), Gaps = 1/77 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F  +   P E VG +A+QS+GEP+TQMTLNTFH AG G  NVTLG+PRL+EI+ +A
Sbjct: 995  IESRFKAAKVNPAEMVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKEIINVA 1054

Query: 1191 SKDIKTPVITCPLLVGK 1207
            + +++TP +   L   K
Sbjct: 1055 T-NLRTPSLLVCLKANK 1070



 Score = 47.4 bits (111), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 11 CPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKA 49
          CPGHFGHI+L  PV++      +  LL+ +C FC   K+
Sbjct: 2  CPGHFGHIELAKPVFHEGFVTTIKKLLESVCLFCGKLKS 40


>gi|397135948|gb|AFO11469.1| RNA polymerase I, partial [Starmerella bombicola]
          Length = 869

 Score =  314 bits (805), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 231/743 (31%), Positives = 350/743 (47%), Gaps = 156/743 (20%)

Query: 319  ANIYLANAYVNQPDN----AKVIVARWMNLQQSVNVLFDGKNAAGQRDM-------ASGI 367
            A+I  ANA V + +     A V+    M LQ  V    D  N AGQ             I
Sbjct: 79   ADIIKANANVQRSETEGAPAHVLNEFEMLLQYHVATYMD-NNIAGQPQALQKSGRPVKSI 137

Query: 368  CQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNV 427
               L+ KEG  R  LMGKRVN++ R+VI+ DP L ++++G+P   A  L+YPE VTP+N+
Sbjct: 138  RARLKGKEGRLRGNLMGKRVNFSARTVITGDPNLELDQVGVPKSIARTLSYPETVTPYNI 197

Query: 428  VKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNE 487
             +L + + NG   HPGA  Y+ + S  R+      R+                    D +
Sbjct: 198  HRLTEYVRNGPNEHPGA-KYIIRDSGERIDLRYHKRVG-------------------DIQ 237

Query: 488  FE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDG 546
             + G  V RHL D D VL NRQP+LHK S+MAH V+V+    T R++ +  S YNADFDG
Sbjct: 238  LQYGWKVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPF-STFRLNLSVTSPYNADFDG 296

Query: 547  DEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRD 606
            DEMN+H PQ E +RAE   +     Q V P +  P+  ++QD +     +T +DTFL+  
Sbjct: 297  DEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFLDYH 356

Query: 607  EFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL 666
                +L+        + ++ G              V+P  PAI KP+PLWTGKQ+++   
Sbjct: 357  SVQNILF-------WVPNWDG--------------VVPQ-PAILKPKPLWTGKQMVSMA- 393

Query: 667  NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEV 726
                             +P   F  RF+ +   +  K D G                   
Sbjct: 394  -----------------IPPGIFMQRFDENNPINSPK-DNG------------------- 416

Query: 727  VEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGS 784
                                     +L+YK +++ GV++K        GL+HT+    G 
Sbjct: 417  -------------------------MLVYKGEVMYGVVNKKTVGATAGGLIHTIFREKGP 451

Query: 785  NTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALE 844
                  +  L ++   +L   GF+ G+ D +       +     + ++ I          
Sbjct: 452  QACSQFVGDLQKIVNYWLLHVGFSIGIGDTIA------DAATMYNVTQTIA--------- 496

Query: 845  LEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLS------- 897
                        KS++++ +    DA     + +    L +   +SVI EL S       
Sbjct: 497  ----------DAKSKVQQII---NDAQANTLNPEPGMTLRESFEASVIRELNSARDTSGR 543

Query: 898  EGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWD 957
            E        N +  M ++G+KGS +N  Q+S+ +GQQ +EGKR+      ++LP F   D
Sbjct: 544  EAETSLKDDNNVKQMVSAGSKGSFINISQMSACVGQQIVEGKRIGFGFVDRSLPHFTRDD 603

Query: 958  WAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIS 1017
            ++P + GF+ + +L GL PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + 
Sbjct: 604  YSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVQ 663

Query: 1018 YDYSVRDADGSIVQFCYGEDGVD 1040
            YD S R++ G ++QF YGEDG+D
Sbjct: 664  YDGSARNSLGDVIQFVYGEDGLD 686


>gi|520503|gb|AAC83397.1| RNA polymerase II, largest subunit, partial [Artemia salina]
          Length = 1341

 Score =  314 bits (805), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 240/813 (29%), Positives = 369/813 (45%), Gaps = 164/813 (20%)

Query: 256  ENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRL------PSKGGDSVME 306
            E   E+   ISD +    G   K A      L V+ VPP+  R        +KG D +  
Sbjct: 131  ERVHEIFKHISDEECHILGMDPKFARPDWMILTVIPVPPLNVRPTVIMFGSAKGHDDL-- 188

Query: 307  HPQTVLLSKVLQANIYLANAYVNQPDN---AKVIVARWMNLQQSVNVLFDGKNAAGQRDM 363
               T  L  +++AN    N  +   ++   A +I      LQ  V  + D      QR M
Sbjct: 189  ---TYKLGDIIKAN----NELIRNEESGAAAHIIHENIRMLQFHVATMVDNDMPGLQRAM 241

Query: 364  ------ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLT 417
                     I   L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  LT
Sbjct: 242  QKSGRPVKSIKSRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLT 301

Query: 418  YPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRKLDTS 473
            +PE VTP N  KL + +  G   +PGA + +    +++     P    + +  G K++  
Sbjct: 302  FPEMVTPLNHAKLTELVQRGNSQYPGAKYIIRENGERIDLRYHPKTTDLHLQFGYKVE-- 359

Query: 474  RGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH 533
                                 RH++DGD+V+ NRQPTLHK S+M H VRVL    T RM+
Sbjct: 360  ---------------------RHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPW-STFRMN 397

Query: 534  YANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSA 593
             +  + YNADFDGDEMN+H  Q   +RAE  NI     Q + P    P+  ++QD + + 
Sbjct: 398  LSCTTPYNADFDGDEMNLHVAQSLETRAELENIHITPRQIITPQANRPVMGIVQDTLCAV 457

Query: 594  ALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPE 653
              +TK+D FL +++   LL         L ++ GK  Q               PAI KP+
Sbjct: 458  RKMTKRDVFLEKEQMMTLLMY-------LPTWDGKLPQ---------------PAILKPK 495

Query: 654  PLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTN 713
            PLWTGKQ+ T ++               GK+                        + KT+
Sbjct: 496  PLWTGKQLFTLII--------------PGKV-----------------------NMMKTH 518

Query: 714  KMHKDKS--GKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF-A 770
              H D    G  K +  G                   + K+++   +L+ G++ K    A
Sbjct: 519  STHPDDEDDGPYKWISPG-------------------DTKVMVEHGELIMGILCKKTLGA 559

Query: 771  DYG-LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLH 829
              G ++H +    G +  G     +  +   +L   G + G+ D +     + +  N + 
Sbjct: 560  SAGSILHIIFLELGHDICGKFYGNIQTVVNNWLLYEGHSIGIGDTI----ADPQTYNSIQ 615

Query: 830  GSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN---KH 886
             + +  K   ++ +      E++P              G+     F+ ++   LN     
Sbjct: 616  TTIKKAKEDVIDVITKAHNNELEPTP------------GNTLRQTFENQVNRILNDARDK 663

Query: 887  TSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVS 946
            T  S  N L        T  N +  M  SG+KGS +N  Q+ + +GQQ +EGKR+P    
Sbjct: 664  TGGSAKNSL--------TEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 715

Query: 947  GKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRC 1006
             +TLP F   D+ P + GF+ + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR 
Sbjct: 716  KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRR 775

Query: 1007 LIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            LIK +E   ++YD +VR++ G ++Q  YGEDG+
Sbjct: 776  LIKAMEACMVAYDGTVRNSVGQVIQLRYGEDGL 808



 Score = 86.3 bits (212), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 64/94 (68%), Gaps = 1/94 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
             ++ AD++  N  A +  +  ++ +F L+ A PGE VG +A+QS+GEP+TQMTLNTFH A
Sbjct: 963  TKRLADEYRLNTEAFEWLIGEIETRFQLAQAVPGEMVGAIAAQSLGEPATQMTLNTFHFA 1022

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            G    NVTLG+PRL+EI+ + S+  K P +T  L
Sbjct: 1023 GVSSKNVTLGVPRLKEIINV-SRSPKAPSLTVFL 1055


>gi|397135812|gb|AFO11401.1| RNA polymerase I, partial [Ogataea minuta]
          Length = 870

 Score =  314 bits (805), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 233/757 (30%), Positives = 364/757 (48%), Gaps = 157/757 (20%)

Query: 306  EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQ----- 360
            E   T  L+ +L+ANI +    ++   + + +V+ +  L Q     +   + AGQ     
Sbjct: 72   EDDLTYKLADILKANINVQRCEMD--GSPQHVVSEFEALLQYHVATYMDNDIAGQPQALQ 129

Query: 361  ---RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLT 417
               R + S I   L+ KEG  R  LMGKRV+++ R+VIS DP L ++++G+P   A  LT
Sbjct: 130  KSGRPIKS-IRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKVLT 188

Query: 418  YPERVTPWNVVKLRDSIINGAEIHPGATHYL-DKLSTMRLPPNKK---MRISIGRKLDTS 473
            YPE VTP+N+ KL + ++NG   HPGA + + D    + L  NK+   +++  G K++  
Sbjct: 189  YPEIVTPYNIQKLTELVLNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIQLQYGWKVE-- 246

Query: 474  RGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH 533
                                 RHL D D VL NRQP+LHK S+MAH V+V+    T RM+
Sbjct: 247  ---------------------RHLMDNDPVLFNRQPSLHKMSMMAHRVKVMP-YSTFRMN 284

Query: 534  YANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSA 593
             +  S YNADFDGDEMN+H PQ   +RAE   I     Q V P +  P+  ++QD +   
Sbjct: 285  LSVTSPYNADFDGDEMNLHVPQSYETRAELEQICAVPLQIVSPQSNKPVMGIVQDTLCGV 344

Query: 594  ALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPE 653
              +T +D+F+  D+   + +        + ++ G              V+P  PAI KP+
Sbjct: 345  RKMTLRDSFIEYDQVMNMCF-------WIPNWDG--------------VVP-QPAILKPK 382

Query: 654  PLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTN 713
            PLW+GKQV++                    +PQ  F  R +    S +   D G L    
Sbjct: 383  PLWSGKQVLSMC------------------IPQGIFLQRLDGSLLSPK---DSGML---- 417

Query: 714  KMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY- 772
                                                    I   +++ GV++KA      
Sbjct: 418  ----------------------------------------IVNGEIMFGVVNKATVGASA 437

Query: 773  -GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGS 831
             GL+HTV    G      L   + ++   +L  +GF+ G+ D +      +     +  +
Sbjct: 438  GGLIHTVMREKGPQVCAQLFGNIQKVVNYWLLHNGFSIGIGDAIADSATMKTITETIAIA 497

Query: 832  EEIGKRVHLEA----LELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHT 887
            +E  + V ++A    LE E G  +                       F+ K++  LN+  
Sbjct: 498  KEKVQEVIMDAQNNLLEAEPGMTVR--------------------ESFEQKVSKLLNEAR 537

Query: 888  SSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSG 947
             S+  +   +E  LK +  N +  M T+G+KGS +N  Q+S+ +GQQ +EGKR+    + 
Sbjct: 538  DSAGKS---AETSLKDS--NNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFAD 592

Query: 948  KTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL 1007
            ++LP F   D++  + GF+ + +L GL PQE++FH MAGREGL+DTAVKT+ +GY+QR L
Sbjct: 593  RSLPHFTKDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRL 652

Query: 1008 IKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT 1044
            +K LE + + YD + R++ G I+QF YGEDG+D  Q 
Sbjct: 653  LKALEDIMVHYDGTTRNSLGDIIQFVYGEDGLDGTQV 689


>gi|414866669|tpg|DAA45226.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
          Length = 548

 Score =  314 bits (805), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 190/448 (42%), Positives = 251/448 (56%), Gaps = 44/448 (9%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           CK+CGQ    CPGHFGHI+L  P++NPLLF  L  LL   CF CH F+ ++ +V++ V +
Sbjct: 66  CKSCGQHSVRCPGHFGHIELAKPLFNPLLFMSLKNLLHVTCFHCHKFRLNKEQVDRYVNE 125

Query: 61  LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQE-WTS 119
           LEL++KGDI+ AK+L+  +     + ED +++  +S          DN  ++K ++ WTS
Sbjct: 126 LELLVKGDIVCAKNLEDSVEEAYLSKEDENMNKTTS---------GDNSSSVKDKKTWTS 176

Query: 120 LQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNL- 178
           +Q  E      + +K    KC  C  K+P IS P FGW+  +    A +R N I    L 
Sbjct: 177 IQLKEVLSIFSKIMKKRQKKCAKCDMKSPTISSPIFGWLVKDTKASA-VRTNAIADFKLK 235

Query: 179 --------GETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSG 230
                   GET   G EE+    SS        S N     + DT           V S 
Sbjct: 236 GDGDIHNSGETGVSGLEEE----SSSPGMVSKDSINEVRGLSDDTIKE-------LVASS 284

Query: 231 FKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVV 287
            KK        LLP++V+ I++ LW+NE   C  + D Q+       K+ G+ +FFL  +
Sbjct: 285 GKKH-------LLPTEVESILKDLWKNEARFCMLLCDFQKNMSSEPEKRRGYEMFFLSSL 337

Query: 288 LVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQS 347
           LV P +FR  +     +MEHPQ+VLLSKV ++N  LA  + N   N   ++ RWM+LQ+S
Sbjct: 338 LVAPNRFRPSTSSSLGIMEHPQSVLLSKVQESN--LALQHNNASSNHMDVLQRWMDLQRS 395

Query: 348 VNVLFDG-KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEI 406
           VNVL+D  K  A     A GI QLLEKKEG+ RQK+MGKRVNYACRSVISPDPYLAVNEI
Sbjct: 396 VNVLYDSSKGLARSEKNAHGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAVNEI 455

Query: 407 GIPPYFALRLTYPERVTPWNVVKLRDSI 434
           GIPP FA RLTYPE V       L DSI
Sbjct: 456 GIPPVFATRLTYPEVVLYALFNILYDSI 483


>gi|352682852|ref|YP_004893376.1| DNA-directed RNA polymerase subunit A' [Thermoproteus tenax Kra 1]
 gi|350275651|emb|CCC82298.1| DNA-directed RNA polymerase subunit A' [Thermoproteus tenax Kra 1]
          Length = 883

 Score =  314 bits (805), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 264/846 (31%), Positives = 401/846 (47%), Gaps = 162/846 (19%)

Query: 228  PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIF-FLGV 286
            P  F ++ +  +G L+  D + ++E+L +         SD++  G    +    +  L V
Sbjct: 169  PYNFYEETE--TGALIKLDPETVLERLVKVPN------SDLELLGIDPTSARPEWAILRV 220

Query: 287  VLVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAY-VNQPDNAKVIVARWMN 343
            + VPP   R PS   ++ +  E   T  L  +++ N  L  A     P N  VI   W  
Sbjct: 221  LPVPPPHVR-PSIQLETGIRSEDDLTHKLVDIMRMNEKLKIALETGAPTN--VIDNLWDL 277

Query: 344  LQQSVNVLFDGK-------NAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            LQ  +   FD +          G R +  GI Q L+ KEG FR  L GKRVN++ R+VIS
Sbjct: 278  LQYHIATYFDNELPGIPLAKHRGGRPL-KGIAQRLKGKEGRFRGSLSGKRVNFSARTVIS 336

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PDP L++NE+G+P   A  LT PERVT WN+  L+ +++ G E  PGA + +        
Sbjct: 337  PDPNLSINEVGVPIDIAKVLTVPERVTQWNLEDLKQAVMRGPEAWPGANYVIT------- 389

Query: 457  PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
             P        GR++D     +    + ++    G +V RH++DGD+ L NRQP+LH+ S+
Sbjct: 390  -PE-------GRRIDLR--YVKDRKQLAEKLAPGWIVERHIRDGDIALFNRQPSLHRVSM 439

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            M H+VRVL G +T R+H A C  YNADFDGDEMN+H PQ E +RAEA  ++      V P
Sbjct: 440  MGHIVRVLPG-RTFRLHLAVCPPYNADFDGDEMNLHIPQTEEARAEARTLMLVQEHIVTP 498

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
              G  +    QD+I+ A LL++K T L + E   L+ +  +                   
Sbjct: 499  RYGGAIIGARQDYIIGAYLLSRKTTLLTKKEAAFLVGAMKL------------------- 539

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
               ++ LP  PAI  P  LWTGKQ+I+                    LP+DF   +  A 
Sbjct: 540  ---EDELPE-PAILHPVELWTGKQIISMT------------------LPRDFNWVQPTAF 577

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
            K + +                               E    EK+         E ++I  
Sbjct: 578  KSTCK-------------------------------EPYTCEKD---------EWIIIIN 597

Query: 757  NDLVRGVIDK----AQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
             +L+ G +DK    A+  D  L H +   Y S+ A   L +  RLF  FL + GF+ G+D
Sbjct: 598  GNLLAGTLDKKSIGAEQVD-SLWHRIARDYSSDVARRWLDSSLRLFLRFLDLRGFSMGLD 656

Query: 813  DLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
             L +  +        LH  ++I +    +A+EL              IE    G  +AA 
Sbjct: 657  SLNLPDEA-------LHEVDKIIENGINKAMEL--------------IEIYREGRLEAAP 695

Query: 873  AY-----FDMKMTSQLNKHTS--SSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQ 925
             Y      + ++   L++  S   +V++  + +       ++   LM  +GA+GS  N  
Sbjct: 696  GYTVQETLENRLAEILSRVRSDAEAVVDRYIDK-------RSEAYLMAKTGARGSLTNIV 748

Query: 926  QISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMA 985
            Q+ + LGQQ + G+R+ R    +TLP F   D  P +GGF+   F  GL P EY+FH   
Sbjct: 749  QMVATLGQQTIRGERIKRGYRTRTLPHFPVGDIGPFSGGFVRSSFKRGLTPIEYFFHAAG 808

Query: 986  GREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTS 1045
            GR+GL+DTAV+T++SGY+QR +I  L+   ++YD +VR   G ++Q  YG+DG DV ++ 
Sbjct: 809  GRDGLIDTAVRTAQSGYMQRRIINALQDAYVAYDGTVRYGTGLLLQPLYGDDGTDVSKSD 868

Query: 1046 FISKFD 1051
                F+
Sbjct: 869  HGRPFN 874



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TCGQ   +CPGHFGHI+L  PV +      +Y +L+  C  C        E+ +   +
Sbjct: 66  CETCGQSYDVCPGHFGHIELAKPVIHVEFARFIYDVLRATCPHCGRIMLKDEEIRRYSER 125

Query: 61  LE 62
           L+
Sbjct: 126 LQ 127


>gi|397135922|gb|AFO11456.1| RNA polymerase I, partial [Pachysolen tannophilus]
          Length = 870

 Score =  314 bits (804), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 210/677 (31%), Positives = 330/677 (48%), Gaps = 130/677 (19%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VIS DP L ++++G+P   A  LTYPE VTP+N+ KL
Sbjct: 140  LKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPRSIARTLTYPEMVTPYNIHKL 199

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE- 489
               + NG   HPGA +                    G ++D          +  D   + 
Sbjct: 200  TLLVRNGPNEHPGARYVFR---------------DTGERIDLKYHK-----RAGDIALQY 239

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G +V RHL D D VL NRQP+LHK S+M H V+V+    T R++ +  S YNADFDGDEM
Sbjct: 240  GWIVERHLMDNDPVLFNRQPSLHKMSMMTHRVKVMP-YSTFRLNLSVTSPYNADFDGDEM 298

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ E +RAE   +     Q V P +  P+  ++QD +     +T +D F+  D+  
Sbjct: 299  NLHVPQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDVFIEYDQVM 358

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
             +LY        + ++ G              V+P  P I KP+PLWTGKQ+++      
Sbjct: 359  NILY-------WIPTWDG--------------VIPE-PTIIKPKPLWTGKQMLS------ 390

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
                   V+ +G            N +++ +          K   + KD +G        
Sbjct: 391  ------MVIPKG-----------INIERKDE----------KFTYLSKDDTG-------- 415

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTA 787
                                  +LI   +++ GV++K      G  L+H V    G    
Sbjct: 416  ----------------------MLIIDGEIMLGVVNKKTVGATGGGLIHAVMREKGPQVC 453

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED 847
              L   + ++   +L  +GF+ G+ D +      R+  N +  +++  + + L A   E 
Sbjct: 454  ADLFGNIQKVVNYWLLHNGFSIGIGDTIADAPTVRQITNTILKAKDKVQEIILRAQNNE- 512

Query: 848  GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKN 907
                    L  E    +R   +  V+    +    + K T+ ++ +             N
Sbjct: 513  --------LPPEPGMTLRESFEQNVSQVLNQARDDVGKATADALKD------------LN 552

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
             +  M ++G+KGS +N  Q+S+ +GQQ +EGKR+P   S ++LP F   D++P + GF+ 
Sbjct: 553  NVKQMVSAGSKGSNINISQMSACVGQQIVEGKRIPFGFSDRSLPHFTKDDYSPESRGFVE 612

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
            + +L GL PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD + R++ G
Sbjct: 613  NSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLG 672

Query: 1028 SIVQFCYGEDGVDVHQT 1044
            +++QF YGEDG+D  Q 
Sbjct: 673  NVLQFIYGEDGLDATQV 689


>gi|83320460|gb|ABC02857.1| RNA polymerase II largest subunit, partial [Paraglomus occultum]
          Length = 847

 Score =  314 bits (804), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 210/679 (30%), Positives = 329/679 (48%), Gaps = 136/679 (20%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VI+ DP ++V+E+G+P   A  LTYPE VT  N+  L
Sbjct: 94   LKGKEGRLRGNLMGKRVDFSARTVITGDPNISVDEVGVPRSIARNLTYPELVTRLNIDHL 153

Query: 431  RDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN 486
            ++ + NG   HPGA + +    +++         ++R+ IG K                 
Sbjct: 154  QELVRNGPSEHPGAKYVIRDTGERIDLKHYKRAGEVRLQIGWK----------------- 196

Query: 487  EFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDG 546
                  V RH+ DGD+V+ NRQP+LHK S+M H VRV+    T R++ +  + YNADFDG
Sbjct: 197  ------VERHIDDGDIVIFNRQPSLHKMSMMGHRVRVMP-YSTFRLNLSVTTPYNADFDG 249

Query: 547  DEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRD 606
            DEMN+H PQ   ++AE   I     Q V P +  P+  ++QD + +    TK+D FL RD
Sbjct: 250  DEMNMHIPQSVETKAEIMEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFLTRD 309

Query: 607  EFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL 666
                +L         +  + G               +P +P I KP P+WTGKQ+++ + 
Sbjct: 310  LVMNILM-------WVPDWDGH--------------IP-IPCILKPVPMWTGKQILSII- 346

Query: 667  NHITRGRPPFVVERGGKLPQDFFKTRFNAD--KQSDRKKNDKGKLSKTNKMHKDKSGKKK 724
              I +G                     N+D  + S    N+   +S              
Sbjct: 347  --IPKG--------------------VNSDNLRHSTHPDNETSDIS-------------- 370

Query: 725  EVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELY 782
                  PG+ K                +LI   +L+ G++ K     +  GL+H + +  
Sbjct: 371  ------PGDTK----------------VLIEDGELLSGIVCKKTVGTSQQGLIHVIMQEL 408

Query: 783  GSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEA 842
            G   A   L+    +   +L  +GF+ G+ D +  KD            E I + +    
Sbjct: 409  GPEAAKNFLNGCQGVVNYWLLQNGFSIGIGDTIADKDT----------IESIAQTIS--- 455

Query: 843  LELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLK 902
                  + +  I ++++ +K     G      F+ K+  +LN    ++           K
Sbjct: 456  ---NAKSRVQEIIIQAQQDKLEPQPGMTIRKTFENKVNKELNTARDAA------GRSAEK 506

Query: 903  PTGK-NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 961
              G+ N +  M  SG+KGS +N  Q+S+ +GQQ +EGKR+P     +TLP F   D +P 
Sbjct: 507  SLGEYNNVKQMVISGSKGSFINISQMSACVGQQNVEGKRIPFGFKYRTLPHFTKDDHSPE 566

Query: 962  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1021
            + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY+QR L+K LE + + YD +
Sbjct: 567  SRGFVENSYLRGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGT 626

Query: 1022 VRDADGSIVQFCYGEDGVD 1040
            VR++ G +++FCYGEDG D
Sbjct: 627  VRNSLGDVIRFCYGEDGTD 645


>gi|395533542|ref|XP_003768816.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sarcophilus
            harrisii]
          Length = 1921

 Score =  314 bits (804), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 239/824 (29%), Positives = 376/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIVPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +T     S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|260796451|ref|XP_002593218.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
 gi|229278442|gb|EEN49229.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
          Length = 1934

 Score =  314 bits (804), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 220/727 (30%), Positives = 346/727 (47%), Gaps = 137/727 (18%)

Query: 334  AKVIVARWMNLQQSVNVLFDGKNAAGQRDMASG------ICQLLEKKEGLFRQKLMGKRV 387
            A +I      LQ  V  L D +     R +         + Q L+ KEG  R  LMGKRV
Sbjct: 296  AHIIAEDTKMLQFHVTTLVDNEVPGMPRAVQKSGRPLKSVKQRLKGKEGRIRGNLMGKRV 355

Query: 388  NYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY 447
            +++ R+VI+PDP L ++++G P   A  LT+PE VTP+N+ ++++ +  GA  +PGA + 
Sbjct: 356  DFSARAVITPDPNLQIDQVGCPRTVAQNLTFPEIVTPFNIDRMQELVRRGANQYPGAKYI 415

Query: 448  LDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVN 506
            +                  G ++D          K SD   + G  V RH++D D+V+ N
Sbjct: 416  IR---------------DTGHRIDLRYHP-----KPSDLHLQCGYKVERHIRDDDIVIFN 455

Query: 507  RQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNI 566
            RQPTLHK S+M H V++L    T R++ +  + YNADFDGDEMN+H PQ   +RAE   +
Sbjct: 456  RQPTLHKMSMMGHRVKILPW-STFRLNLSVTTPYNADFDGDEMNMHVPQSVETRAEIMEL 514

Query: 567  VNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFT 626
                   + P +  P+  ++QD + +    TK+D F++R++   LL         L ++ 
Sbjct: 515  AMVPRMIITPQSNRPVMGIVQDTLTAVRKFTKRDVFIDRNDMMNLLM-------WLPTWD 567

Query: 627  GKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLP 685
            GK  Q               PAI KP+PLWTGKQ+ + ++  H+                
Sbjct: 568  GKMPQ---------------PAILKPKPLWTGKQLFSLIIPGHV---------------- 596

Query: 686  QDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK--SGKKKEVVEGKPGEEKEAEKNKSK 743
                                     + +  H D+  SG  K +    PG+ K        
Sbjct: 597  ----------------------NCIRMHSTHPDEEDSGPYKWI---SPGDTK-------- 623

Query: 744  EKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVF 801
                    +++   +L+ G++ K      G  LVH V    G  T+      +  +   +
Sbjct: 624  --------VIVENGELISGILCKKSLGPSGGSLVHIVALEMGHETSKLFYGYIQTVVNNW 675

Query: 802  LQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIE 861
            L + G T G+ D +      ++ +N +       K+  L+ +E+ + A  D      E+E
Sbjct: 676  LLLEGHTIGIGDCIADTQTYQDIQNTI-------KKAKLDVIEVIEKAHND------ELE 722

Query: 862  KAMRGGGDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKG 919
                  G+     F+ ++   LN  +  +     + LSE        N    M  +G+KG
Sbjct: 723  PT---PGNTLRQTFENQVNRILNDARDKTGGSAQKSLSEF-------NNFKSMVVAGSKG 772

Query: 920  SKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEY 979
            SK+N  Q+ + +GQQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL P E+
Sbjct: 773  SKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF 832

Query: 980  YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            +FH M GREGL+DTAVKTS +GY+QR LIK +E + I+YD +VR+++  +VQ  YGEDG+
Sbjct: 833  FFHAMGGREGLIDTAVKTSETGYIQRRLIKAMESVMIAYDGTVRNSNRHLVQLRYGEDGL 892

Query: 1040 DVHQTSF 1046
            D     F
Sbjct: 893  DAVSIEF 899



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 57/78 (73%), Gaps = 1/78 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
             L  ++ +F  ++ QPGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI
Sbjct: 1064 LLGEIESRFNQAIVQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEI 1123

Query: 1187 LTIASKDIKTPVITCPLL 1204
            + + SK  KTP +T  LL
Sbjct: 1124 INV-SKKPKTPSLTVFLL 1140



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 27/50 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
           C+TC      CPGHFGHI+L  PVY+         +++ +CFFC     S
Sbjct: 71  CQTCAGNMAECPGHFGHIELAKPVYHIGFLTKTIKIMRCVCFFCSKLLVS 120


>gi|327287678|ref|XP_003228555.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Anolis
            carolinensis]
          Length = 1969

 Score =  314 bits (804), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 210/689 (30%), Positives = 326/689 (47%), Gaps = 137/689 (19%)

Query: 369  QLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVV 428
            Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A  +T+ E VTP+N+ 
Sbjct: 340  QRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 399

Query: 429  KLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDS 484
            +L++ +  G   +PGA + +    D++     P    + + IG K++             
Sbjct: 400  RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVE------------- 446

Query: 485  DNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADF 544
                      RH+ DGD+V+ NRQPTLHK S+M H VR+L    T R++ +  + YNADF
Sbjct: 447  ----------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-STFRLNLSVTTPYNADF 495

Query: 545  DGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLN 604
            DGDEMN+H PQ   +RAE   +       V P +  P+  ++QD + +    TK+D FL 
Sbjct: 496  DGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLE 555

Query: 605  RDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITA 664
            R E   LL         L ++ GK  Q               PAI KP PLWTGKQ+ + 
Sbjct: 556  RGEVMNLLMF-------LSTWDGKVPQ---------------PAILKPRPLWTGKQIFSL 593

Query: 665  VL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKD--KSG 721
            ++  HI                                         +T+  H D   SG
Sbjct: 594  IIPGHI--------------------------------------NCIRTHSTHPDDEDSG 615

Query: 722  KKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQ 779
              K +  G                   + K+++   +L+ G++ K         LVH   
Sbjct: 616  PYKHISPG-------------------DTKVIVENGELIMGILCKKSLGTSAGSLVHISY 656

Query: 780  ELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVH 839
               G +      S +  +   +L + G T G+ D +      ++ +N +  +    K+  
Sbjct: 657  LEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKA----KQDV 712

Query: 840  LEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN--KHTSSSVINELLS 897
            +E +E     E++P              G+     F+ ++   LN  +  + S   + LS
Sbjct: 713  IEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILNDARDKTGSSAQKSLS 760

Query: 898  EGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWD 957
            E        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P     +TLP F   D
Sbjct: 761  E-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDD 813

Query: 958  WAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIS 1017
            + P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY+QR LIK++E + + 
Sbjct: 814  YGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVK 873

Query: 1018 YDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            YD +VR++   +VQ  YGEDG+      F
Sbjct: 874  YDATVRNSINQVVQLRYGEDGLAGESVEF 902



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 57/78 (73%), Gaps = 1/78 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
             L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+E+
Sbjct: 1067 LLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEL 1126

Query: 1187 LTIASKDIKTPVITCPLL 1204
            + I SK  KTP +T  LL
Sbjct: 1127 INI-SKKPKTPSLTVFLL 1143



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 70  CQTCAGNMTECPGHFGHIELAKPVFHVGFLGKTMKVLRCVCFFC 113


>gi|451994492|gb|EMD86962.1| hypothetical protein COCHEDRAFT_1217961 [Cochliobolus heterostrophus
            C5]
          Length = 1737

 Score =  314 bits (804), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 213/678 (31%), Positives = 336/678 (49%), Gaps = 137/678 (20%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VI+ DP L+++++G+P   A  LTYPE VT +N+ KL
Sbjct: 338  LKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNISKL 397

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
             + + NG   HPGA +Y+ K   +RL       +   + LD  R               G
Sbjct: 398  TNLVRNGPNQHPGA-NYVIKADGVRL------DLKHNKNLDDLRLQY------------G 438

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RH+ D DV++ NRQP+LHK S+M H V+V+    T R++ +  S YNADFDGDEMN
Sbjct: 439  WKVERHIDDDDVIIFNRQPSLHKESMMGHRVKVMP-YSTFRLNLSVTSPYNADFDGDEMN 497

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ + +RAE  N+     Q V P    PL  ++QD ++    +T++D F+  ++   
Sbjct: 498  LHVPQSDETRAEIQNLCMVPKQIVSPQKNQPLMGIVQDTLLGVYKMTRRDNFIPIEQVMP 557

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            ++         +  + G              +LP  PAI KP PLWTGKQ+++       
Sbjct: 558  IMM-------WVPDWDG--------------ILP-EPAILKPRPLWTGKQIVSMA----- 590

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                              F    N +K+ D                              
Sbjct: 591  ------------------FPREVNIEKKED------------------------------ 602

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK--AQFADYGLVHTVQELYGSNTAG 788
                   +   SK+ ++ ++ L+I    L+ G + K     +  G++H V    GS+ A 
Sbjct: 603  -------DSTPSKDNDIKDKSLMIKGGQLIYGQVTKKIVGASAGGVIHIVFNELGSDAAV 655

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
               ++  R+   +L  +GF+ GV D +               SE+I   +    +++ED 
Sbjct: 656  KFFNSCQRICNWWLLHYGFSFGVGDTI----------PDPGTSEKIASEISKSKVKVED- 704

Query: 849  AEIDPIKLKSEIEK----AMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPT 904
              I     K ++E      +RG  ++ V     K  ++  +   ++  N L         
Sbjct: 705  --IIATATKDQLEPLPGMTIRGTFESKV----QKFLNEGREGGGTAAQNSL--------- 749

Query: 905  GKNWISLMTT--SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRA 962
             K++ +++ T  SG+KGS VN  Q+ + +GQQ +EG+R+P     +TLP F   D++P +
Sbjct: 750  -KDFNNVVQTVVSGSKGSTVNISQMVALVGQQAVEGQRIPYGFKYRTLPHFSKDDYSPES 808

Query: 963  GGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSV 1022
             GF+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD +V
Sbjct: 809  RGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTV 868

Query: 1023 RDADGSIVQFCYGEDGVD 1040
            R++ G IV+F YGEDG+D
Sbjct: 869  RNSMGDIVEFIYGEDGLD 886



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 62/87 (71%), Gaps = 1/87 (1%)

Query: 1111 EKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
            +K A +   N+ A    L  ++ +F+ +   PGE VG+LA+QS+GEP+TQMTLNTFH AG
Sbjct: 1044 KKLAVEHRLNKEALSYVLGELEDRFLKAAVAPGEMVGVLAAQSIGEPATQMTLNTFHFAG 1103

Query: 1171 RGEMNVTLGIPRLQEILTIASKDIKTP 1197
                NVTLG+PRL+EIL IA+ +IKTP
Sbjct: 1104 VSSKNVTLGVPRLKEILNIAA-NIKTP 1129



 Score = 48.9 bits (115), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKA 49
           C TC +   +CPGHFGHI+L  PV++      +  LL+ +C  C   KA
Sbjct: 69  CATCKEDIQVCPGHFGHIELHTPVFHVGFVVKIKKLLETVCHTCGMIKA 117


>gi|341888769|gb|EGT44704.1| hypothetical protein CAEBREN_28388 [Caenorhabditis brenneri]
          Length = 1024

 Score =  314 bits (804), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 232/738 (31%), Positives = 357/738 (48%), Gaps = 128/738 (17%)

Query: 289  VPPIKFR--LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNA--KVIVARWMNL 344
            VPP+  R  + S+      E   T+ L +++  N  L     ++ D A  K +   W +L
Sbjct: 253  VPPVCIRPSVVSEVKSGTTEDDVTMKLMEIMLTNDVLKK---HKRDGAPSKTLFETWEHL 309

Query: 345  QQSVNVLFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDP 399
            Q    +  + + +    DM          Q L+ K+G FR  L GKRV+++ R+VISPDP
Sbjct: 310  QIQCALYINSEMSGLPADMQPKKAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDP 369

Query: 400  YLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPN 459
             L ++++G+P + A+ LT+PE V   N+ K+R  +ING++IHPGA + +DK +      N
Sbjct: 370  NLRIDQVGVPIHVAMTLTFPEIVNKSNIEKMRQLVINGSDIHPGANYLVDKKTG-----N 424

Query: 460  KKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAH 519
            KK+ +  G++ + ++           N   G  V RHL D DVVL NRQP+LHK SIM+H
Sbjct: 425  KKL-LKYGKREELAK-----------NLRYGDTVERHLDDNDVVLFNRQPSLHKISIMSH 472

Query: 520  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNG 579
              +V+ G +T R +   C+ YNADFDGDEMN+H PQ   ++AEA  ++N  N  + P +G
Sbjct: 473  RAKVMPG-RTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSG 531

Query: 580  DPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSE 639
            +PL + IQD I    LLT KDTFL R E  +        ++ L   + K   ++ I    
Sbjct: 532  EPLVAAIQDFITGGYLLTHKDTFLPRAEVYRF-------AAALIDASAKKQTKIRIPP-- 582

Query: 640  QEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQS 699
                   PAI +P  LWTGKQ+I  ++      RP    ++G ++  +           +
Sbjct: 583  -------PAILRPVELWTGKQLIELII------RP----DKGSQVSLNL----------T 615

Query: 700  DRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDL 759
             + K+  G L   NK                                  +  ++I  + L
Sbjct: 616  TKNKSYSGNLEFCNK----------------------------------DSYVIIRNSVL 641

Query: 760  VRGVIDKAQFADYGLVHTVQEL---YGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLI 816
            + G +DK+       V+    L   YG + A   +  L+R+  VFL   GF+ G+ D+  
Sbjct: 642  LAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRP 701

Query: 817  LKDKERERKNHL--HGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
              +K  + K  L   G E+  + +     ELE+G      KLK++         +A +  
Sbjct: 702  -SEKLLQEKGQLVDKGYEQCAQFIK----ELEEG------KLKAQPGCTEEETLEAII-- 748

Query: 875  FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
              ++  S +  H     +  L        +  N    M   G+KGS +N  Q+ + +GQQ
Sbjct: 749  --LRELSTIRDHAGQVCLRNL--------SKYNAPLTMAVCGSKGSFINISQMIACVGQQ 798

Query: 935  ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
             + G R P     ++LP F      P A GF+ + F +GL P E++FH M GREGLVDTA
Sbjct: 799  AISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTA 858

Query: 995  VKTSRSGYLQRCLIKNLE 1012
            VKT+ +GY+QR L+K LE
Sbjct: 859  VKTAETGYMQRRLVKCLE 876



 Score = 44.3 bits (103), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TCG     C GHFG+ DL VPV++   F L   LL+ IC  C
Sbjct: 70  CATCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNC 113


>gi|451846374|gb|EMD59684.1| hypothetical protein COCSADRAFT_164565 [Cochliobolus sativus ND90Pr]
          Length = 1737

 Score =  313 bits (803), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 213/678 (31%), Positives = 335/678 (49%), Gaps = 137/678 (20%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VI+ DP L+++++G+P   A  LTYPE VT +N+ KL
Sbjct: 338  LKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNISKL 397

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
             + + NG   HPGA +Y+ K   +RL       +   + LD  R               G
Sbjct: 398  TNLVRNGPNQHPGA-NYVIKADGVRL------DLKHNKNLDDLRLQY------------G 438

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RH+ D DV++ NRQP+LHK S+M H V+V+    T R++ +  S YNADFDGDEMN
Sbjct: 439  WKVERHIDDDDVIIFNRQPSLHKESMMGHRVKVMP-YSTFRLNLSVTSPYNADFDGDEMN 497

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ + +RAE  N+     Q V P    PL  ++QD ++    +T++D F+  ++   
Sbjct: 498  LHVPQSDETRAEIQNLCMVPKQIVSPQKNQPLMGIVQDTLLGVYKMTRRDNFIPIEQVMP 557

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            ++         +  + G              +LP  PAI KP PLWTGKQ+++       
Sbjct: 558  IMM-------WVPDWDG--------------ILP-EPAILKPRPLWTGKQIVSMA----- 590

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                              F    N +K+ D                              
Sbjct: 591  ------------------FPREVNIEKKED------------------------------ 602

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAG 788
                   +   SK+ ++ ++ L+I    L+ G + K        G++H V    GS+ A 
Sbjct: 603  -------DSTPSKDNDIKDKSLMIKGGQLIYGQVTKKIVGASAGGVIHIVFNELGSDAAV 655

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
               ++  R+   +L  +GF+ GV D +               SE+I   +    +++ED 
Sbjct: 656  KFFNSCQRICNWWLLHYGFSFGVGDTI----------PDPGTSEKIASEISKSKVKVED- 704

Query: 849  AEIDPIKLKSEIEK----AMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPT 904
              I     K ++E      +RG  ++ V     K  ++  +   ++  N L         
Sbjct: 705  --IIATATKDQLEPLPGMTIRGTFESKV----QKFLNEGREGGGTAAQNSL--------- 749

Query: 905  GKNWISLMTT--SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRA 962
             K++ +++ T  SG+KGS VN  Q+ + +GQQ +EG+R+P     +TLP F   D++P +
Sbjct: 750  -KDFNNVVQTVVSGSKGSTVNISQMVALVGQQAVEGQRIPYGFKYRTLPHFSKDDYSPES 808

Query: 963  GGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSV 1022
             GF+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD +V
Sbjct: 809  RGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTV 868

Query: 1023 RDADGSIVQFCYGEDGVD 1040
            R++ G IV+F YGEDG+D
Sbjct: 869  RNSMGDIVEFIYGEDGLD 886



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 62/87 (71%), Gaps = 1/87 (1%)

Query: 1111 EKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
            +K A +   N+ A    L  ++ +F+ +   PGE VG+LA+QS+GEP+TQMTLNTFH AG
Sbjct: 1044 KKLAVEHRLNKEALSYVLGELEDRFLKAAVAPGEMVGVLAAQSIGEPATQMTLNTFHFAG 1103

Query: 1171 RGEMNVTLGIPRLQEILTIASKDIKTP 1197
                NVTLG+PRL+EIL IA+ +IKTP
Sbjct: 1104 VSSKNVTLGVPRLKEILNIAA-NIKTP 1129



 Score = 48.9 bits (115), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKA 49
           C TC +   +CPGHFGHI+L  PV++      +  LL+ +C  C   KA
Sbjct: 69  CATCKEDIQVCPGHFGHIELHTPVFHVGFVVKIKKLLETVCHTCGMIKA 117


>gi|346321728|gb|EGX91327.1| DNA-directed RNA polymerase II largest subunit [Cordyceps militaris
            CM01]
          Length = 1757

 Score =  313 bits (803), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 218/673 (32%), Positives = 326/673 (48%), Gaps = 129/673 (19%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VI+ D  L+++E+G+P   A  LTYPE VTP+N+ KL
Sbjct: 343  LKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIAKL 402

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
               + NG   HPGA + +    T         RI +      ++ ++         E+ G
Sbjct: 403  HQLVENGPNEHPGAKYVIRSDGT---------RIDLRHHRRAAQISL---------EY-G 443

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RHL DGD ++ NRQP+LHK S+M H V+V+    T R++ +  S YNADFDGDEMN
Sbjct: 444  WKVERHLIDGDYIIFNRQPSLHKESMMGHRVKVMP-YSTFRLNLSVTSPYNADFDGDEMN 502

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E +RAE   +    N  V P    PL  ++QD +     L ++DTF+++ E  Q
Sbjct: 503  LHVPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGCYKLCRRDTFIDK-ELVQ 561

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
             +                    +L   +   V+P  PAI KP P WTGKQ+I+ V     
Sbjct: 562  NI--------------------MLWVPNWDGVIP-QPAILKPRPRWTGKQIISMV----- 595

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                         +P +   + ++ + + D  K+D G L                     
Sbjct: 596  -------------IPAEI--SLYSKEDKLDNPKHDAGML--------------------- 619

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAG 788
                                   I    L+ G++ K     A  G++H      G + A 
Sbjct: 620  -----------------------IQSGQLIYGLLKKKYVGAAAGGIIHLCYNELGPDGAM 656

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
              L+ + ++ T +L   G + G+ D   + DKE   K   H  E   +   L A    + 
Sbjct: 657  AFLNGVQQVVTYWLLNTGHSIGIGD--TIPDKETIDKIQAHIDEHKAEVARLTAQATANE 714

Query: 849  AEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNW 908
             E  P              G    A F+ K++  LN     +  +   ++  LK +  N 
Sbjct: 715  LEALP--------------GMNVRATFESKVSLALNMARDQAGTS---TQKSLKDS--NN 755

Query: 909  ISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIID 968
               M+ SG+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D++P A GF+ +
Sbjct: 756  AVTMSESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVEN 815

Query: 969  RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGS 1028
             +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE L   YD +VR++ G 
Sbjct: 816  SYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD 875

Query: 1029 IVQFCYGEDGVDV 1041
            ++QF YGEDG+D 
Sbjct: 876  VIQFLYGEDGLDA 888



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 61/84 (72%), Gaps = 1/84 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            N++A    L  +++++  +   PGE VG+LA+QS+GEP+TQMTLNTFH AG    NVTLG
Sbjct: 1052 NKLAFDHVLGELQNRWDRAFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLG 1111

Query: 1180 IPRLQEILTIASKDIKTPVITCPL 1203
            +PRL+EIL +A K+IKTP +   L
Sbjct: 1112 VPRLKEILNLA-KNIKTPSMAVYL 1134



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 30/55 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVE 55
           CKTC Q    CPGHFGHI+L  PVY+P     +  +L+ +C  C    A   + E
Sbjct: 69  CKTCAQPMSECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADESDPE 123


>gi|432920271|ref|XP_004079921.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Oryzias
            latipes]
          Length = 1599

 Score =  313 bits (803), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 220/732 (30%), Positives = 338/732 (46%), Gaps = 147/732 (20%)

Query: 334  AKVIVARWMNLQQSVNVLFDGKNAAGQRDMASG------ICQLLEKKEGLFRQKLMGKRV 387
            A VI      LQ  V  + D +     R M         I Q L+ KEG  R  LMGKRV
Sbjct: 298  AHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRV 357

Query: 388  NYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY 447
            +++ R+VI+PDP L ++++G+P   A  +T+PE VTP+N+ +L++ +  G   +PGA + 
Sbjct: 358  DFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYI 417

Query: 448  L----DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVV 503
            +    D++     P    + + IG K++                       RH+ DGD+V
Sbjct: 418  IRDNGDRIDLRFHPKPSDLHLQIGYKVE-----------------------RHMCDGDIV 454

Query: 504  LVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEA 563
            + NRQPTLHK S+M H VR+L    T R++ +  + YNADFDGDEMN+H PQ   +RAE 
Sbjct: 455  IFNRQPTLHKMSMMGHRVRILPW-STFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEI 513

Query: 564  YNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLG 623
              +       V P +  P+  ++QD + +    TK+D FL R E   LL         L 
Sbjct: 514  QELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF-------LS 566

Query: 624  SFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL-NHITRGRPPFVVERGG 682
            ++ GK  Q               PAI KP PLWTGKQ+ + ++  HI             
Sbjct: 567  TWDGKMPQ---------------PAILKPRPLWTGKQIFSLIIPGHIN------------ 599

Query: 683  KLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKN 740
                                      + +T+  H D   SG  K +  G           
Sbjct: 600  --------------------------VIRTHSTHPDDEDSGPYKHISPG----------- 622

Query: 741  KSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLF 798
                    + K+++   +L+ G++ K         LVH      G +      S +  + 
Sbjct: 623  --------DTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVV 674

Query: 799  TVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEI--GKRVHLEALELEDGAEIDPIKL 856
              +L + G + G+ D +       + K +L     I   K+  +E +E     E++P   
Sbjct: 675  NNWLLIEGHSIGIGDSIA------DAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTP- 727

Query: 857  KSEIEKAMRGGGDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTT 914
                       G+     F+ ++   LN  +  + S   + LSE        N    M  
Sbjct: 728  -----------GNTLRQTFENQVNRILNDARDKTGSSAQKSLSE-------YNNFKSMVV 769

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            +G+KGSK+N  Q+ + +GQQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL
Sbjct: 770  AGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGL 829

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
             P E++FH M GREGL+DTAVKT+ +GY+QR LIK++E + + YD +VR++   +VQ  Y
Sbjct: 830  TPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRY 889

Query: 1035 GEDGVDVHQTSF 1046
            GEDG+      F
Sbjct: 890  GEDGLAGENVEF 901



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            +++  ++F  +  A    L  ++ KF  S+A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1049 SKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1108

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1109 GVSAKNVTLGVPRLKELINI-SKRPKTPSLTVFLL 1142



 Score = 53.1 bits (126), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++    + +  +L+ +CFFC
Sbjct: 69  CQTCAGNMTECPGHFGHIELAKPVFHVGFISKIMKVLRCVCFFC 112


>gi|345800197|ref|XP_857844.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1 isoform 3 [Canis lupus familiaris]
          Length = 1970

 Score =  313 bits (803), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|312076520|ref|XP_003140898.1| DNA-directed RNA polymerase II largest subunit [Loa loa]
          Length = 1875

 Score =  313 bits (803), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 237/768 (30%), Positives = 364/768 (47%), Gaps = 135/768 (17%)

Query: 286  VVLVPPIKFRLPS--KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMN 343
            V+ VPP+  R P+    G +  +   T  LS +++ N  L     N    A V+      
Sbjct: 244  VIPVPPLTVR-PAVVTFGSARNQDDLTHKLSDIVKTNNQLKRNEANGA-AAHVLAEDVKL 301

Query: 344  LQQSVNVLFD----GKNAA---GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            LQ  V  L D    G  AA   G R + S I Q L+ KEG  R  LMGKRV+++ R+VI+
Sbjct: 302  LQYHVATLIDNSIPGLPAATQKGGRPLKS-IKQRLKGKEGRIRGNLMGKRVDFSARTVIT 360

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PDP L ++ +G+P   A  +T+PE VTP+N+ KL++ +  G   +PGA + + +      
Sbjct: 361  PDPNLPIDTVGVPRTIAQNMTFPEIVTPFNIDKLQELVNRGDSQYPGAKYIIRE------ 414

Query: 457  PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
                  R+ + R    +    +QP         G  V RH++DGD+++ NRQPTLHK S+
Sbjct: 415  ---NGARVDL-RYHPRAADLHLQP---------GYRVERHMKDGDIIVFNRQPTLHKMSM 461

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            M H V++L    T R++ +  + YNADFDGDEMN+H PQ   ++AE   I     Q + P
Sbjct: 462  MGHKVKILPW-STFRLNLSVTTPYNADFDGDEMNLHLPQSLETKAEVSEIAMVPRQLITP 520

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
                P+  ++QD + +  ++TK+D F+       LL         + ++ GK  Q     
Sbjct: 521  QANKPVMGIVQDTLTAVRMMTKRDVFIELPRMMDLLMQ-------MPNWDGKVPQ----- 568

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
                      PAI KP+PLWTGKQV T +                  +P +    R ++ 
Sbjct: 569  ----------PAILKPKPLWTGKQVFTLI------------------IPGNVNVLRTHST 600

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
               D                 + +G  K +    PG+ K                ++I  
Sbjct: 601  HPDD-----------------EDNGPYKWI---SPGDTK----------------VIIEH 624

Query: 757  NDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             +L+ G+I           L+H V    G   A    S +  +   +L   G T G+ D 
Sbjct: 625  GELLSGIICSRTIGRSAGNLLHVVTLELGWEVAAHFYSHIQTVVNAWLVAEGHTIGIGDT 684

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
            +  +   R+        +E  ++  L+ +E+ + A  D      E+E      G+     
Sbjct: 685  IADQATYRD-------IQETIRKAKLDVVEVIEKAHND------ELEPT---PGNTLRQT 728

Query: 875  FDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
            F+  +   LN  +  +       LSE        N    M  +G+KGSK+N  Q+ + +G
Sbjct: 729  FENMVNRILNDARDRTGGSAQRSLSE-------YNNFKAMVVAGSKGSKINISQVIACVG 781

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+D
Sbjct: 782  QQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLID 841

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            TAVKT+ +GY+QR LIK +E + +SYD +VR++ G +VQ  YGEDG+D
Sbjct: 842  TAVKTAETGYIQRRLIKAMESVMVSYDGTVRNSLGQLVQLRYGEDGLD 889



 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 63/92 (68%), Gaps = 1/92 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            A++ A+K   N    +  +  ++ +F  ++ QPGE VG +A+QS+GEP+TQMTLNTFH A
Sbjct: 1048 AKRMAEKHRLNSEGFEWLIGEIESRFKQAIVQPGEMVGAIAAQSLGEPATQMTLNTFHYA 1107

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITC 1201
            G    NVTLG+PRL+EI+ + SK  KTP +T 
Sbjct: 1108 GVSAKNVTLGVPRLKEIINV-SKKPKTPSLTV 1138



 Score = 48.9 bits (115), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC      CPGHF HI+L  PV++    +    LL+ +CF+C     SR  V+K   +
Sbjct: 66  CMTCAGSLADCPGHFAHIELAKPVFHIGFLSKTLKLLRCVCFYC-----SRLMVDKDSPR 120

Query: 61  LELIIK 66
           ++ ++K
Sbjct: 121 VKELLK 126


>gi|452844541|gb|EME46475.1| hypothetical protein DOTSEDRAFT_70470 [Dothistroma septosporum NZE10]
          Length = 1773

 Score =  313 bits (802), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 218/682 (31%), Positives = 329/682 (48%), Gaps = 145/682 (21%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VI+ DP L ++++G+P   A  LT+PERVTP+N  KL
Sbjct: 342  LKSKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPRSIARVLTFPERVTPYNKHKL 401

Query: 431  RDSIINGAEIHPGATHYL-DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE 489
             + + NG   HPGA   + D  S + L  +K+             G I        N   
Sbjct: 402  TELVRNGPLEHPGAKFIIRDDGSRIDLRYHKRA------------GEI--------NLMV 441

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G +V RH+ D D ++ NRQP+LHK S+M H V+V+    T R++ +  S YNADFDGDEM
Sbjct: 442  GWIVERHVVDNDYIIFNRQPSLHKESMMGHRVKVMP-YSTFRLNLSVTSPYNADFDGDEM 500

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ   +RAE  N+    +  V P    PL  ++QD +    ++T++D FL+ ++  
Sbjct: 501  NLHVPQSHETRAEVANLCAVPHNIVSPQKNGPLMGIVQDTMAGIYMMTRRDVFLDYEQVM 560

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
             +L                    + +   +  V P  PAI KP P WTGKQ+ +      
Sbjct: 561  NIL--------------------LWVPGWDGVVPP--PAIIKPLPRWTGKQIASLA---- 594

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
                          LP      R   D    R++ D G + +             E++ G
Sbjct: 595  --------------LPAGLNILRPKKDHMPLREEKDDGLVIQNG-----------EIIWG 629

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGT 789
            +                            +V+G++     +  G+VH +    G + A  
Sbjct: 630  R----------------------------MVKGIVGA---SGGGVVHCIFNDRGPDAAVE 658

Query: 790  LLSALSRLFTVFLQMHGFTCGV-----DDLLI--LKDKERERKNHLHGSEEIGKRVHLEA 842
              +A  R+   +L  +GF+ G+     DD ++  ++D+   +K  + G E     V    
Sbjct: 659  FFNAAQRIVCYWLLHNGFSVGIGDTIPDDFMVGKIEDEIISQKEAVQGFE---TEVQANE 715

Query: 843  LELEDGAEIDPI---KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEG 899
            LE   G  I      K K+ ++ A    GD  VAY          KH ++          
Sbjct: 716  LEPAPGMTIRETFESKTKAALDNARNKSGD--VAY----------KHMNAC--------- 754

Query: 900  LLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWA 959
                   N + +M  SG+KGS  N  Q+++ +GQQ LEGKR+P     + LP F   D++
Sbjct: 755  -------NNVGIMVKSGSKGSTTNVSQMTAAVGQQSLEGKRLPFGFKYRVLPHFPKDDYS 807

Query: 960  PRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYD 1019
            P + GF+ + +L GL PQE++FH M GREGL+DTAVKT+ +GY+QR L+K LE + I YD
Sbjct: 808  PASRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEEVMIKYD 867

Query: 1020 YSVRDADGSIVQFCYGEDGVDV 1041
             +VR++ G I+QF YGEDG+D 
Sbjct: 868  STVRNSLGDILQFAYGEDGLDA 889



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 60/78 (76%), Gaps = 1/78 (1%)

Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
            +++A  + L  ++++F+ +L  PGE VG+LA+QS+GEP+TQMTLNTFHLAG      T G
Sbjct: 1055 SKLALDNILGDIENRFLRALVSPGEMVGVLAAQSIGEPATQMTLNTFHLAGVTAKTTTKG 1114

Query: 1180 IPRLQEILTIASKDIKTP 1197
            +PRL+EIL +A ++IKTP
Sbjct: 1115 VPRLKEILNVA-ENIKTP 1131



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TCG+ Q  CPGHFGHI+L +PV++      +  +L+ +C  C
Sbjct: 67  CGTCGEEQLECPGHFGHIELAIPVFHVGFITKIKKILESVCHNC 110


>gi|324120556|dbj|BAJ78669.1| RNA polymerase II largest subunit [Thrips palmi]
          Length = 1708

 Score =  313 bits (802), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 241/806 (29%), Positives = 373/806 (46%), Gaps = 146/806 (18%)

Query: 252  EKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVME 306
            E++WE    +   I+D +    G   K A      +  + VPP+  R P+    G +  +
Sbjct: 193  ERVWE----ILKHITDEECFILGMDPKFARPDWMIVTCLPVPPLCVR-PAVVMYGSARNQ 247

Query: 307  HPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMN-LQQSVNVLFDGKNAAGQRDMAS 365
               T  LS +L+AN  L      Q   A  ++A  +  LQ  V  L D       R M  
Sbjct: 248  DDLTHKLSDILKANNELLRN--EQAGAATHVLAENIKMLQFHVATLVDNDMPGLPRAMQK 305

Query: 366  ------GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYP 419
                   I   L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  LT+P
Sbjct: 306  SGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFP 365

Query: 420  ERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQ 479
            E VTP+N+ K+++ +  G   +PGA + +                  G ++D        
Sbjct: 366  EIVTPFNIDKMQELVRRGNSQYPGAKYIVR---------------DNGERIDLR----FH 406

Query: 480  PGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS 538
            P K SD   + G  V RH++DGD+V+ NRQPTLHK S+M H V+VL    T RM+ +  S
Sbjct: 407  P-KTSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPW-STFRMNLSCTS 464

Query: 539  TYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTK 598
             YNADFDGDEMN+H PQ   +RAE  NI     Q + P    P+  ++QD + +   +TK
Sbjct: 465  PYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANQPVMGIVQDTLTAVRKMTK 524

Query: 599  KDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTG 658
            +D FL +++   LL         L  + GK  Q               P I KP+PLWTG
Sbjct: 525  RDVFLEKEQMMTLLMF-------LPIWDGKMPQ---------------PCILKPKPLWTG 562

Query: 659  KQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKD 718
            KQ+ + +                  +P +                     L +T+  H D
Sbjct: 563  KQLFSLI------------------IPGNV-------------------NLIRTHSTHPD 585

Query: 719  KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVH 776
                             E +    K     + K+++   +LV+G++ K         L+H
Sbjct: 586  -----------------EEDDGPYKWISPGDTKVMVEHGELVKGILCKKTLGTSPGSLLH 628

Query: 777  TVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGK 836
             +    G    G     +  +   +L + G + G+ D +     +R+  + +  + +  K
Sbjct: 629  VIFLELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTI----ADRQTYSEIQNAIKKAK 684

Query: 837  RVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN---KHTSSSVIN 893
               +E ++     E++P              G+     F+ ++   LN     T  S   
Sbjct: 685  ADVIEVIQKAHNMELEPTP------------GNTLRQTFENQVNRILNDARDKTGGSAKK 732

Query: 894  ELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSF 953
             L        T  N +  M  SG+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F
Sbjct: 733  SL--------TEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 784

Query: 954  HPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLEC 1013
               D+ P + GF+ + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR LIK +E 
Sbjct: 785  IKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMES 844

Query: 1014 LKISYDYSVRDADGSIVQFCYGEDGV 1039
            + ++YD +VR++ G ++Q  YGEDG+
Sbjct: 845  VMVNYDGTVRNSVGQLIQLRYGEDGL 870



 Score = 80.1 bits (196), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 51/70 (72%), Gaps = 1/70 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F  +   PGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ I 
Sbjct: 1046 IETRFQQAQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI- 1104

Query: 1191 SKDIKTPVIT 1200
            SK  K P +T
Sbjct: 1105 SKKPKAPSLT 1114



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 27/50 (54%)

Query: 1  CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
          C+TC      CPGHFGHIDL  PV++         +L+ +CF+C     S
Sbjct: 46 CQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVS 95


>gi|340503712|gb|EGR30247.1| hypothetical protein IMG5_137010 [Ichthyophthirius multifiliis]
          Length = 1464

 Score =  313 bits (802), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 247/790 (31%), Positives = 376/790 (47%), Gaps = 131/790 (16%)

Query: 273  FGKKAGHSI-FFLGVVLVPPIKFRLPSKGGDSVMEHPQ-TVLLSKVLQANIYLANAYVNQ 330
            F     H I   L  ++VPP   R   K G+S + H   TV +   L+ N  +A   +N 
Sbjct: 228  FNIDQNHPIDLILTHIIVPPSCIRPTIKEGESNVRHDDLTVKIRDFLERNKRIAQM-IND 286

Query: 331  PDNAKVIVARWMNLQ---------QSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQK 381
             ++   I   W  LQ         ++ N+ F      G++D+ + + Q L+ K+G FR  
Sbjct: 287  GEDPSKINQEWFLLQCSHAHYLNAETPNLPFKMDKDFGKKDIRA-LAQRLKGKKGRFRGN 345

Query: 382  LMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIH 441
            L GKR N+  R+VISPDP + ++ + IP Y A  LT+PE V  +N+ KL+  +ING + +
Sbjct: 346  LSGKRSNFTGRTVISPDPNIPIDNVVIPEYMAKILTFPETVASYNIDKLKKLVINGPDKY 405

Query: 442  PGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGD 501
            PGA HY+    T       K  +SI    D  R       K +D    G +V RH+Q+G+
Sbjct: 406  PGA-HYIISKDT-----QDKFNLSI----DNRR-------KKADELKIGDVVERHIQNGE 448

Query: 502  VVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRA 561
            +VL NRQP+LH+ SIMA    + K   TLR +   C+ +NADFDGDEMN+H PQ   +RA
Sbjct: 449  IVLFNRQPSLHRISIMAFKANIQKWN-TLRFNECCCAPFNADFDGDEMNIHVPQTIEARA 507

Query: 562  EAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL--LYSSGVSS 619
            EA  +++     + P NG+ + +L+QD + ++ L+T KD F +R  F QL   +S G   
Sbjct: 508  EAQYLLDVKQNLISPKNGETIIALVQDFLTASYLITHKDMFFDRAAFSQLCTYFSDG--- 564

Query: 620  SGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVE 679
                              +EQ  LP  PA+  P  +WTGKQ I A+L             
Sbjct: 565  ------------------NEQIQLP-PPAVILPVEMWTGKQAIDAML------------- 592

Query: 680  RGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEK 739
                +P                                    +K +++     +EK    
Sbjct: 593  ----IP-----------------------------------NRKNKIIVNLTLKEKCYNT 613

Query: 740  NKSKEKELSEEKLLIYKN-DLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALS 795
             K +E    ++  ++++N +L+ G + K         GL + +        A  +++  +
Sbjct: 614  KKDREIMCPKDGYVVFQNSELLCGNLGKTTLGSGNKNGLFYRLSRDNSQQIAAAVMTRFA 673

Query: 796  RLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVH-LEALELEDGAE--ID 852
            +L   +L  +G T G+ D  +    +   +N     E I K  +  +  E E  A+  + 
Sbjct: 674  KLSARWLSNYGMTIGISD--VTPSPQLNEQNEKQKDEAIQKCTYESKKFEREINAQQKLH 731

Query: 853  PIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLM 912
                 SEI    +   +A ++    K  +Q+ +   S+   E      L PT  N   +M
Sbjct: 732  TTSNTSEIAADKKKQVEAFIS----KTLNQVREDIGSNCNKE------LPPT--NGPLIM 779

Query: 913  TTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDW--APRAGGFIIDRF 970
             T G+KGS  N  Q+   +GQQ + GKRVP   +G+TLP F   +    P A GF+ + F
Sbjct: 780  ATCGSKGSATNLSQMIGCVGQQIIGGKRVPNGFTGRTLPHFAKDEIFPHPEAMGFVRNSF 839

Query: 971  LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD-GSI 1029
             TGL   E++FH MAGRE LVDTAVKT+ +GY+ R L+K LE L I+YD +VR  D   +
Sbjct: 840  FTGLSAPEFFFHTMAGRESLVDTAVKTADTGYMSRRLVKMLEDLSINYDLTVRTCDKKEL 899

Query: 1030 VQFCYGEDGV 1039
            +QF YG DG+
Sbjct: 900  IQFRYGGDGI 909



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 54/78 (69%), Gaps = 1/78 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            F KL+  ++   L +PGE VG + + S+ EP+TQMTL +FH AG   MN+T G+PR++EI
Sbjct: 1073 FFKLIWERYPQMLVEPGEAVGAIGATSISEPATQMTLKSFHFAGIASMNITQGVPRMKEI 1132

Query: 1187 LTIASKDIKTPVITCPLL 1204
            +  A+K+I TPVI   LL
Sbjct: 1133 ID-AAKNISTPVIDVKLL 1149



 Score = 48.5 bits (114), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C+TC      CPGHFG+I LV+P+++   F  +  +L+ IC  C     +  E   C ++
Sbjct: 55  CQTCQMDMIDCPGHFGYIKLVLPIFHVGFFTEIINILQCICKNCGEILLNIDEKLACKKR 114

Query: 61  LELII 65
           ++  I
Sbjct: 115 MQRAI 119


>gi|348523738|ref|XP_003449380.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Oreochromis niloticus]
          Length = 1966

 Score =  313 bits (802), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 220/732 (30%), Positives = 338/732 (46%), Gaps = 147/732 (20%)

Query: 334  AKVIVARWMNLQQSVNVLFDGKNAAGQRDMASG------ICQLLEKKEGLFRQKLMGKRV 387
            A VI      LQ  V  + D +     R M         I Q L+ KEG  R  LMGKRV
Sbjct: 298  AHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRV 357

Query: 388  NYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY 447
            +++ R+VI+PDP L ++++G+P   A  +T+PE VTP+N+ +L++ +  G   +PGA + 
Sbjct: 358  DFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYI 417

Query: 448  L----DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVV 503
            +    D++     P    + + IG K++                       RH+ DGD+V
Sbjct: 418  IRDNGDRIDLRFHPKPSDLHLQIGYKVE-----------------------RHMCDGDIV 454

Query: 504  LVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEA 563
            + NRQPTLHK S+M H VR+L    T R++ +  + YNADFDGDEMN+H PQ   +RAE 
Sbjct: 455  IFNRQPTLHKMSMMGHRVRILPW-STFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEI 513

Query: 564  YNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLG 623
              +       V P +  P+  ++QD + +    TK+D FL R E   LL         L 
Sbjct: 514  QELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF-------LS 566

Query: 624  SFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL-NHITRGRPPFVVERGG 682
            ++ GK  Q               PAI KP PLWTGKQ+ + ++  HI             
Sbjct: 567  TWDGKMPQ---------------PAILKPRPLWTGKQIFSLIIPGHI------------- 598

Query: 683  KLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKN 740
                                      + +T+  H D   SG  K +  G           
Sbjct: 599  -------------------------NVIRTHSTHPDDEDSGPYKHISPG----------- 622

Query: 741  KSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLF 798
                    + K+++   +L+ G++ K         LVH      G +      S +  + 
Sbjct: 623  --------DTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVV 674

Query: 799  TVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEI--GKRVHLEALELEDGAEIDPIKL 856
              +L + G + G+ D +       + K +L     I   K+  +E +E     E++P   
Sbjct: 675  NNWLLIEGHSIGIGDSIA------DAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTP- 727

Query: 857  KSEIEKAMRGGGDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTT 914
                       G+     F+ ++   LN  +  + S   + LSE        N    M  
Sbjct: 728  -----------GNTLRQTFENQVNRILNDARDKTGSSAQKSLSE-------YNNFKSMVV 769

Query: 915  SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
            +G+KGSK+N  Q+ + +GQQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL
Sbjct: 770  AGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGL 829

Query: 975  RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
             P E++FH M GREGL+DTAVKT+ +GY+QR LIK++E + + YD +VR++   +VQ  Y
Sbjct: 830  TPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRY 889

Query: 1035 GEDGVDVHQTSF 1046
            GEDG+      F
Sbjct: 890  GEDGLAGENVEF 901



 Score = 87.4 bits (215), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            +++  ++F  +  A    L  ++ KF  S+A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1049 SKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1108

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1109 GVSAKNVTLGVPRLKELINI-SKRPKTPSLTVFLL 1142



 Score = 53.5 bits (127), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++    + +  +L+ +CFFC
Sbjct: 69  CQTCAGNMTECPGHFGHIELAKPVFHVGFISKIMKVLRCVCFFC 112


>gi|194217622|ref|XP_001918406.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Equus caballus]
          Length = 1834

 Score =  313 bits (802), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNGA-AAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHIN-------------------------------------- 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|397135900|gb|AFO11445.1| RNA polymerase I, partial [Scheffersomyces spartinae]
          Length = 872

 Score =  313 bits (802), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 236/764 (30%), Positives = 370/764 (48%), Gaps = 146/764 (19%)

Query: 292  IKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVL 351
            I F   ++G D +     T  L+ VL+ANI +    ++   + + +++ +  L Q     
Sbjct: 63   IAFNDTARGEDDL-----TFKLADVLKANINVQRLEMD--GSPQHVISEFEALLQFHVAT 115

Query: 352  FDGKNAAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
            +   + AGQ        R + S I   L+ K+G  R  LMGKRV+++ R+VIS DP L +
Sbjct: 116  YMDNDIAGQPQALQKTGRPIKS-IRARLKGKDGRIRGNLMGKRVDFSARTVISGDPNLDL 174

Query: 404  NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL-DKLSTMRLPPNKKM 462
            +++G+P   A  L+YPE VTP+N+ +L + + NG   HPGA + + D    + L  NK+ 
Sbjct: 175  DQVGVPISIARTLSYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKR- 233

Query: 463  RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
                                D   ++ G  V RHL D D VL NRQP+LHK S+MAH V+
Sbjct: 234  ------------------AGDIALQY-GWRVERHLMDDDPVLFNRQPSLHKMSMMAHRVK 274

Query: 523  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
            V+    T R++ +  S YNADFDGDEMN+H PQ   +R+E   I     Q + P +  P+
Sbjct: 275  VMP-YSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIISPQSNKPV 333

Query: 583  RSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEV 642
              ++QD +     +T +D F+  D+   +LY        + ++ G              V
Sbjct: 334  MGIVQDTLCGIRKMTLRDIFIEYDQVMNMLY-------WIPNWDG--------------V 372

Query: 643  LPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRK 702
            +P  PA+ KP+ LWTGKQ+++                    +P+     RF+  +     
Sbjct: 373  IP-PPAVMKPKQLWTGKQLLSMA------------------IPKGIHLQRFDDGRDLSCP 413

Query: 703  KNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRG 762
            K DKG L                +V+G                            +++ G
Sbjct: 414  K-DKGML----------------IVDG----------------------------EIMFG 428

Query: 763  VIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDK 820
            V+DK        GL+HTV    G      + SA+ ++   +L  +GF+ G+ D +     
Sbjct: 429  VVDKKTVGATGGGLIHTVFREKGPQVCAQMFSAIQKVVNFWLLHNGFSIGIGDTI----- 483

Query: 821  ERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMT 880
                        E  K +     E +D  ++  I L +++ K     G      F+  ++
Sbjct: 484  ---------ADAETMKTITSTIREAKD--KVQEIILDAQLNKLEPEPGMTLRESFEHNVS 532

Query: 881  SQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKR 940
              LN+   ++  +   +E  LK    N +  M TSG+KGS +N  Q+S+ +GQQ +EGKR
Sbjct: 533  RVLNQARDTAGRS---AEMNLKDL--NNVKQMVTSGSKGSFINISQMSACVGQQIVEGKR 587

Query: 941  VPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRS 1000
            +P     +TLP F   D++P + GF+ + +L GL PQE++FH MAGREGL+DTAVKT+ +
Sbjct: 588  IPFGFGDRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAET 647

Query: 1001 GYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT 1044
            GY+QR +IK LE + + YD + R++ G I+QF YGEDG+D  Q 
Sbjct: 648  GYIQRRIIKALEDIMVHYDGTTRNSLGDIIQFVYGEDGMDGTQV 691


>gi|393905343|gb|EFO23174.2| DNA-directed RNA polymerase II largest subunit [Loa loa]
          Length = 1870

 Score =  313 bits (802), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 237/768 (30%), Positives = 364/768 (47%), Gaps = 135/768 (17%)

Query: 286  VVLVPPIKFRLPS--KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMN 343
            V+ VPP+  R P+    G +  +   T  LS +++ N  L     N    A V+      
Sbjct: 244  VIPVPPLTVR-PAVVTFGSARNQDDLTHKLSDIVKTNNQLKRNEANGA-AAHVLAEDVKL 301

Query: 344  LQQSVNVLFD----GKNAA---GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            LQ  V  L D    G  AA   G R + S I Q L+ KEG  R  LMGKRV+++ R+VI+
Sbjct: 302  LQYHVATLIDNSIPGLPAATQKGGRPLKS-IKQRLKGKEGRIRGNLMGKRVDFSARTVIT 360

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PDP L ++ +G+P   A  +T+PE VTP+N+ KL++ +  G   +PGA + + +      
Sbjct: 361  PDPNLPIDTVGVPRTIAQNMTFPEIVTPFNIDKLQELVNRGDSQYPGAKYIIRE------ 414

Query: 457  PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
                  R+ + R    +    +QP         G  V RH++DGD+++ NRQPTLHK S+
Sbjct: 415  ---NGARVDL-RYHPRAADLHLQP---------GYRVERHMKDGDIIVFNRQPTLHKMSM 461

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            M H V++L    T R++ +  + YNADFDGDEMN+H PQ   ++AE   I     Q + P
Sbjct: 462  MGHKVKILPW-STFRLNLSVTTPYNADFDGDEMNLHLPQSLETKAEVSEIAMVPRQLITP 520

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
                P+  ++QD + +  ++TK+D F+       LL         + ++ GK  Q     
Sbjct: 521  QANKPVMGIVQDTLTAVRMMTKRDVFIELPRMMDLLMQ-------MPNWDGKVPQ----- 568

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
                      PAI KP+PLWTGKQV T +                  +P +    R ++ 
Sbjct: 569  ----------PAILKPKPLWTGKQVFTLI------------------IPGNVNVLRTHST 600

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
               D                 + +G  K +    PG+ K                ++I  
Sbjct: 601  HPDD-----------------EDNGPYKWI---SPGDTK----------------VIIEH 624

Query: 757  NDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             +L+ G+I           L+H V    G   A    S +  +   +L   G T G+ D 
Sbjct: 625  GELLSGIICSRTIGRSAGNLLHVVTLELGWEVAAHFYSHIQTVVNAWLVAEGHTIGIGDT 684

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
            +  +   R+        +E  ++  L+ +E+ + A  D      E+E      G+     
Sbjct: 685  IADQATYRD-------IQETIRKAKLDVVEVIEKAHND------ELEPT---PGNTLRQT 728

Query: 875  FDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
            F+  +   LN  +  +       LSE        N    M  +G+KGSK+N  Q+ + +G
Sbjct: 729  FENMVNRILNDARDRTGGSAQRSLSE-------YNNFKAMVVAGSKGSKINISQVIACVG 781

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+D
Sbjct: 782  QQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLID 841

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            TAVKT+ +GY+QR LIK +E + +SYD +VR++ G +VQ  YGEDG+D
Sbjct: 842  TAVKTAETGYIQRRLIKAMESVMVSYDGTVRNSLGQLVQLRYGEDGLD 889



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 63/92 (68%), Gaps = 1/92 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            A++ A+K   N    +  +  ++ +F  ++ QPGE VG +A+QS+GEP+TQMTLNTFH A
Sbjct: 1043 AKRMAEKHRLNSEGFEWLIGEIESRFKQAIVQPGEMVGAIAAQSLGEPATQMTLNTFHYA 1102

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITC 1201
            G    NVTLG+PRL+EI+ + SK  KTP +T 
Sbjct: 1103 GVSAKNVTLGVPRLKEIINV-SKKPKTPSLTV 1133



 Score = 48.5 bits (114), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC      CPGHF HI+L  PV++    +    LL+ +CF+C     SR  V+K   +
Sbjct: 66  CMTCAGSLADCPGHFAHIELAKPVFHIGFLSKTLKLLRCVCFYC-----SRLMVDKDSPR 120

Query: 61  LELIIK 66
           ++ ++K
Sbjct: 121 VKELLK 126


>gi|410979885|ref|XP_003996311.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Felis catus]
          Length = 1817

 Score =  313 bits (802), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RFARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSAXXQDDLTHKLADIVKINNQLRRNEQNGA-AAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHIN-------------------------------------- 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.4 bits (215), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|402898581|ref|XP_003912299.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Papio anubis]
          Length = 1970

 Score =  313 bits (802), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|332847192|ref|XP_511300.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Pan
            troglodytes]
          Length = 1907

 Score =  313 bits (802), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|109488292|ref|XP_343923.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
            [Rattus norvegicus]
 gi|109491096|ref|XP_001079162.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
            [Rattus norvegicus]
          Length = 1970

 Score =  313 bits (802), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|281185484|sp|P24928.2|RPB1_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
            polymerase II subunit B1; AltName: Full=DNA-directed RNA
            polymerase II subunit A; AltName: Full=DNA-directed RNA
            polymerase III largest subunit; AltName:
            Full=RNA-directed RNA polymerase II subunit RPB1
          Length = 1970

 Score =  313 bits (802), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|4505939|ref|NP_000928.1| DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]
 gi|345842509|ref|NP_001230931.1| polymerase (RNA) II (DNA directed) polypeptide A [Cricetulus griseus]
 gi|332251063|ref|XP_003274666.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Nomascus
            leucogenys]
 gi|403274932|ref|XP_003929214.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Saimiri
            boliviensis boliviensis]
 gi|36124|emb|CAA45125.1| RNA polymerase II largest subunit [Homo sapiens]
 gi|2443336|dbj|BAA22377.1| RNA polymerase II largest subunit [Cricetulus griseus]
 gi|14328881|dbj|BAB60684.1| RNA polymerase II largest subunit [Cricetulus griseus]
 gi|119610587|gb|EAW90181.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
            CRA_a [Homo sapiens]
 gi|223460954|gb|AAI37232.1| Polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Homo
            sapiens]
          Length = 1970

 Score =  313 bits (802), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|31127034|gb|AAF26651.2|AF139001_1 RNA polymerase II largest subunit [Polyxenus fasciculatus]
          Length = 751

 Score =  313 bits (802), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 210/670 (31%), Positives = 327/670 (48%), Gaps = 129/670 (19%)

Query: 378  FRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIING 437
             R  LMGKRV+++ R+VI+PDP L ++++G+P   A  LT+PE VTP+N+ K+++ +  G
Sbjct: 1    IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRG 60

Query: 438  AEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRH 496
               +PGA + +                  G ++D        P K SD   + G  V RH
Sbjct: 61   NSQYPGAKYIIR---------------DNGERIDLR----FHP-KPSDLHLQCGYRVERH 100

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            ++DGDVV+ NRQPTLHK S+M H +RV     T RM+ +  + YNADFDGDEMN+H PQ 
Sbjct: 101  VRDGDVVIFNRQPTLHKMSMMGHHIRVFPW-STFRMNLSVTTPYNADFDGDEMNLHVPQS 159

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
              +RAE   +     Q + P +  P+  ++QD + +   +TK+D FL++D+   +L    
Sbjct: 160  METRAEIEELAIVPRQIITPQSNRPVMGIVQDTLTAVRKMTKRDVFLDKDQMMNILMF-- 217

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                 L  + GK  Q               PAI KP+P+WTGKQV + +           
Sbjct: 218  -----LPIWDGKMPQ---------------PAILKPKPVWTGKQVFSLI----------- 246

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKS--GKKKEVVEGKPGEE 734
                   +P +                     + +T+  H D    G  K +    PG+ 
Sbjct: 247  -------IPGNV-------------------NMIRTHSTHPDDEDDGPYKWI---SPGDT 277

Query: 735  KEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLS 792
            K                +L+   +L+ G++ K         L+H V    G  TAG   S
Sbjct: 278  K----------------VLVEHGELMCGILCKKSLGTSAGSLLHIVMLELGWETAGLFYS 321

Query: 793  ALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID 852
             +  +   +L + G T G+ D +     +++  + +  +    K+  +E +E     E++
Sbjct: 322  HIQTVVNNWLLLEGHTIGIGDTI----ADQQTYHEIQETIRKAKQDVIEVIEKAHNDELE 377

Query: 853  PIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWIS 910
            P              G+     F+ ++   LN  +  +       LSE        N   
Sbjct: 378  PTP------------GNTLRQTFENQVNRILNDARDKTGGSAQRSLSEF-------NNFK 418

Query: 911  LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRF 970
             M  SGAKGSK+N  Q+ + +GQQ +EGKR+P     +TLP F   D+ P + GF+ + +
Sbjct: 419  AMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSY 478

Query: 971  LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIV 1030
            L GL P E++FH M GREGL+DTAVKT+ +GY+QR LIK +E + ++YD +VR++ G ++
Sbjct: 479  LAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVTYDGTVRNSVGQLI 538

Query: 1031 QFCYGEDGVD 1040
            Q  YGEDG+D
Sbjct: 539  QLRYGEDGLD 548


>gi|293340189|ref|XP_002724554.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
            [Rattus norvegicus]
 gi|293351610|ref|XP_002727769.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
            [Rattus norvegicus]
          Length = 1932

 Score =  313 bits (802), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|133327|sp|P08775.3|RPB1_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
            polymerase II subunit B1; AltName: Full=DNA-directed RNA
            polymerase II subunit A; AltName: Full=DNA-directed RNA
            polymerase III largest subunit
          Length = 1970

 Score =  313 bits (802), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|219127092|ref|XP_002183777.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405014|gb|EEC44959.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1706

 Score =  313 bits (802), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 239/793 (30%), Positives = 375/793 (47%), Gaps = 150/793 (18%)

Query: 282  FFLGVVLVPPIKFRLPS---KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIV 338
              + V+ VPP+  R PS    GG    E   T  L  V+++N+ L  A  N     +++V
Sbjct: 169  LLVQVLPVPPLHVR-PSVTVGGGTQSSEDDLTHQLVNVIKSNLSLQQAVSN--GEPQIVV 225

Query: 339  ARW-MNLQQSVNVLFDGK-NAAGQRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYAC 391
             ++ + LQ +V    D +     Q    SG     I Q L+ KEG  R  LMGKRV+++ 
Sbjct: 226  EQFELALQHNVAAFMDNELRGMPQVTQRSGRPLKTITQRLKGKEGRIRGNLMGKRVDFSA 285

Query: 392  RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
            R+VI+ DP L ++++G+P   A+ LT P RVT +N  +L   + NG  +HPGA H +   
Sbjct: 286  RTVITADPNLGIHQVGVPRSVAMNLTVPIRVTAFNQAELSALVANGPTMHPGAKHIIRSD 345

Query: 452  STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
             T         RI +    + S   +            G +V RHL+D D+VL NRQP+L
Sbjct: 346  GT---------RIDLRYVKNKSELLLAH----------GWIVERHLRDDDIVLFNRQPSL 386

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK SIM H  +VL    T R++ +  S YNADFDGDEMN+H PQ   +RAEA  ++ ++ 
Sbjct: 387  HKMSIMGHKAKVLDW-STFRLNLSCTSPYNADFDGDEMNLHVPQGLAARAEAELMMLSSR 445

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V   +  P+ S++QD +++   +TK+  F+ +D    +L         +  + G+   
Sbjct: 446  VIVSGQSNRPVMSIVQDSLLATQKMTKRSVFIEKDLCYNMLM-------WVPQWNGQ--- 495

Query: 632  RVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKT 691
                       +P +PA+ KP+ LWTGKQ+++ +                  LP+   K+
Sbjct: 496  -----------IP-IPAVIKPKELWTGKQLLSTI------------------LPKVNLKS 525

Query: 692  RFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEK 751
            + N                  N   KD  G                 KN      + +  
Sbjct: 526  KAN------------------NGPGKDARG-----------------KNMPNTFNMYDHL 550

Query: 752  LLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTC 809
            + I   +L+ G +DK        GL+HT     G       ++ + +L   ++  + F+ 
Sbjct: 551  VTIQDGELLEGTVDKKTIGSSMGGLIHTAWLDVGFEETARFMNQIQQLVNHWILQYSFSI 610

Query: 810  GVDDLLILKDKERERKNHLHGS----EEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMR 865
            G  D +   D  R+ ++ +  +    +++ ++  L  LE++ G        ++ IE    
Sbjct: 611  GAIDAVADADTMRQIESTIDKAKRQVQDLVRQGQLGELEIQPG--------RTMIES--- 659

Query: 866  GGGDAAVAYFDMKMTSQLNK---HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV 922
                     F+  +   LN    H   S  + L           N +  M T+G+KGS +
Sbjct: 660  ---------FEQLVNKVLNTARDHAGKSAQSSL--------DETNSVKAMVTAGSKGSFI 702

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  QI + +GQQ +EGKR+P     +TLP F   D    + GF+ + +L GL PQE++FH
Sbjct: 703  NISQIIACVGQQNVEGKRIPYGFKKRTLPHFSKDDIGSESRGFVENSYLRGLSPQEFFFH 762

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVH 1042
             M GREGL+DTA KT+ +GY+QR L+K +E +   YD ++R + G IVQF YGEDG+D  
Sbjct: 763  AMGGREGLIDTACKTAETGYIQRRLVKAMETVMARYDGTLRTSSGQIVQFLYGEDGMDA- 821

Query: 1043 QTSFISK--FDAL 1053
               +I K  FD+L
Sbjct: 822  --VWIEKQNFDSL 832



 Score = 84.0 bits (206), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 55/73 (75%), Gaps = 1/73 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F +++  PGE  G+LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ +A
Sbjct: 1006 IETRFNIAMVNPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVA 1065

Query: 1191 SKDIKTPVITCPL 1203
             K  KTP +T  L
Sbjct: 1066 -KTPKTPGLTIYL 1077



 Score = 43.5 bits (101), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 22/37 (59%)

Query: 12 PGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFK 48
          PG+FGH+DL  PVY+   FN     L+ +CF C   +
Sbjct: 27 PGYFGHLDLAKPVYHQGFFNTTLRALRCVCFHCSRLR 63


>gi|432105605|gb|ELK31799.1| DNA-directed RNA polymerase II subunit RPB1 [Myotis davidii]
          Length = 1970

 Score =  313 bits (802), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|329663165|ref|NP_001193242.1| DNA-directed RNA polymerase II subunit RPB1 [Bos taurus]
          Length = 1970

 Score =  313 bits (802), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|426383941|ref|XP_004058535.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
            [Gorilla gorilla gorilla]
          Length = 1883

 Score =  313 bits (802), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNGA-AAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHIN-------------------------------------- 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|324499938|gb|ADY39985.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
          Length = 1867

 Score =  313 bits (802), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 232/778 (29%), Positives = 357/778 (45%), Gaps = 155/778 (19%)

Query: 286  VVLVPPIKFRLPS--KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMN 343
            V+ VPP+  R P+    G +  +   T  LS +++ N  L     N    A VI      
Sbjct: 244  VLPVPPLAVR-PAVVTFGSARNQDDLTHKLSDIVKTNNQLRRNEANGA-AAHVIAEDVKL 301

Query: 344  LQQSVNVLFDG-------KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            LQ  V  L D            G R + S I Q L+ KEG  R  LMGKRV+++ R+VI+
Sbjct: 302  LQYHVATLVDNCIPGLPTATQKGGRPLKS-IKQRLKGKEGRIRGNLMGKRVDFSARTVIT 360

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PDP L ++ +G+P   A  +T+PE VTP+NV KL++ +  G   +PGA + +        
Sbjct: 361  PDPNLPIDTVGVPRTIAQNMTFPEIVTPFNVDKLQELVNRGDSQYPGAKYIIR------- 413

Query: 457  PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
              +   R+ + R    +   ++QP         G  V RH++DGD+++ NRQPTLHK S+
Sbjct: 414  --DNGARVDL-RYHPRAADLLLQP---------GYRVERHMKDGDIIVFNRQPTLHKMSM 461

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            M H V++L    T RM+ +  + YNADFDGDEMN+H PQ   ++AE   I     Q + P
Sbjct: 462  MGHRVKILPW-STFRMNLSVTTPYNADFDGDEMNLHLPQSLETKAEISEIAMVPRQLITP 520

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
                P+  ++QD + +  ++TK+D F+       LL         + ++ GK  Q     
Sbjct: 521  QANKPVMGIVQDTLTAVRMMTKRDVFIELPRMMDLLMQ-------MPNWDGKIPQ----- 568

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
                      PAI KP+PLWTGKQV T +                  +P +    R ++ 
Sbjct: 569  ----------PAILKPKPLWTGKQVFTLI------------------IPGNVNVLRTHST 600

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
               D                 + SG  K +  G                   + K++I  
Sbjct: 601  HPDD-----------------EDSGPYKWISPG-------------------DTKVIIEH 624

Query: 757  NDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             +L+ G+I           L+H V    G   A    S +      +L   G T G+ D 
Sbjct: 625  GELLAGIICSKTIGRSAGNLLHVVTLELGWEVAAHFYSHIQTTVNAWLLAEGHTIGIGDT 684

Query: 815  L----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
            +      KD +   +   +   E+ ++ H + LE   G  +                   
Sbjct: 685  IADQATYKDIQETIRKAKYDVVEVIEKAHNDELEPTPGNTL------------------- 725

Query: 871  AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL--------MTTSGAKGSKV 922
                          + T  +++N +L++   +  G    SL        M  +G+KGSK+
Sbjct: 726  --------------RQTFENMVNRILNDARDRTGGSAQRSLSEFNNFKAMVVAGSKGSKI 771

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  Q+ + +GQQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL P E++FH
Sbjct: 772  NISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFH 831

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             M GREGL+DTAVKT+ +GY+QR LIK +E + ++YD +VR++   +VQ  YGEDG+D
Sbjct: 832  AMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSIAQMVQLRYGEDGLD 889



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 64/92 (69%), Gaps = 1/92 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            +++ A+K   N  A +  +  ++ +F  ++ QPGE VG +A+QS+GEP+TQMTLNTFH A
Sbjct: 1043 SKRMAEKHKLNMEAFEWLIGEIESRFKQAIVQPGEMVGAIAAQSLGEPATQMTLNTFHYA 1102

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITC 1201
            G    NVTLG+PRL+EI+ + SK  KTP +T 
Sbjct: 1103 GVSAKNVTLGVPRLKEIINV-SKKPKTPSLTV 1133



 Score = 47.8 bits (112), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC      CPGHF H++L  PV++         +L+ +CF+C     SR  ++K   +
Sbjct: 66  CMTCAGNLADCPGHFAHLELAKPVFHIGFITKTLKILRCVCFYC-----SRLLIDKDAPR 120

Query: 61  LELIIK 66
           ++ I+K
Sbjct: 121 VKEILK 126


>gi|195168657|ref|XP_002025147.1| GL26742 [Drosophila persimilis]
 gi|194108592|gb|EDW30635.1| GL26742 [Drosophila persimilis]
          Length = 1804

 Score =  313 bits (801), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 240/805 (29%), Positives = 368/805 (45%), Gaps = 144/805 (17%)

Query: 252  EKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVME 306
            E++WE    +   I+D +    G   K A      + V+ VPP+  R P+    G +  +
Sbjct: 211  ERVWE----ILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVR-PAVVMFGAAKNQ 265

Query: 307  HPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS- 365
               T  LS +++AN  L     +    A VI      LQ  V  L D       R M   
Sbjct: 266  DDLTHKLSDIIKANNELRKNEASG-AAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324

Query: 366  -----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE 420
                  I   L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  LT+PE
Sbjct: 325  GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384

Query: 421  RVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP 480
             VTP+N+ ++++ +  G   +PGA + +                  G ++D        P
Sbjct: 385  LVTPFNIDRMQELVRRGNSQYPGAKYIVR---------------DNGERIDLR----FHP 425

Query: 481  GKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 539
             K SD   + G  V RHL+D D+V+ NRQPTLHK S+M H V+VL    T RM+ +  S 
Sbjct: 426  -KSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWS-TFRMNLSCTSP 483

Query: 540  YNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
            YNADFDGDEMN+H PQ   +RAE  NI     Q + P    P+  ++QD + +   +TK+
Sbjct: 484  YNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKR 543

Query: 600  DTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
            D F+ R++   LL         L ++ GK  Q               P I KP PLWTGK
Sbjct: 544  DVFITREQVMNLLMF-------LPTWDGKMPQ---------------PCILKPRPLWTGK 581

Query: 660  QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
            Q+ + +                  +P +                     + +T+  H D 
Sbjct: 582  QIFSLI------------------IPGNV-------------------NMIRTHSTHPD- 603

Query: 720  SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHT 777
                            E +    K     + K+++   DL+ G++ K         L+H 
Sbjct: 604  ----------------EEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHI 647

Query: 778  VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKR 837
                 G   AG     +  +   +L + G + G+ D +     + +  N +  + +  K 
Sbjct: 648  CFLELGHEIAGRFYGNIQTVINNWLLLEGHSIGIGDTI----ADPQTYNEIQMAIKKAKD 703

Query: 838  VHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN---KHTSSSVINE 894
              +  ++     E++P              G+     F+ K+   LN     T  S    
Sbjct: 704  DVINVIQKAHNMELEPTP------------GNTLRQTFENKVNRILNDARDKTGGSAKKS 751

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
            L        T  N +  M  SG+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F 
Sbjct: 752  L--------TEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFI 803

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
              D+ P + GF+ + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR LIK +E +
Sbjct: 804  KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 863

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGV 1039
             ++YD +VR++ G ++Q  YGEDG+
Sbjct: 864  MVNYDGTVRNSVGQLIQLRYGEDGL 888



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F  + A PGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ I 
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI- 1122

Query: 1191 SKDIKTPVITCPLLVG 1206
            SK  K P +T  L  G
Sbjct: 1123 SKKPKAPSLTVFLTGG 1138



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 13/115 (11%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC-------HHFK----- 48
           C+TC      CPGHFGHIDL  PV++         +L+ +CF+C       H+ K     
Sbjct: 67  CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 49  -ASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTP 102
             S+ +  K +  +  + KG  I     D+DL  ++  P+ +       C    P
Sbjct: 127 VKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQPDPNKKPGHGGCGHYQP 181


>gi|2443334|dbj|BAA22376.1| RNA polymerase II largest subunit [Cricetulus griseus]
          Length = 1970

 Score =  313 bits (801), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|6677795|ref|NP_033115.1| DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]
 gi|200794|gb|AAA40071.1| RNA polymerase II [Mus musculus]
          Length = 1932

 Score =  313 bits (801), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|297271809|ref|XP_001118060.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Macaca
            mulatta]
          Length = 1097

 Score =  313 bits (801), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNGA-AAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS-T 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHIN-------------------------------------- 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|351701567|gb|EHB04486.1| DNA-directed RNA polymerase II subunit RPB1 [Heterocephalus glaber]
 gi|417406836|gb|JAA50059.1| Putative rna polymerase i large subunit [Desmodus rotundus]
          Length = 1970

 Score =  313 bits (801), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|120561213|gb|ABM26992.1| RNA polymerase II largest subunit, partial [Capniomyces stellatus]
          Length = 1024

 Score =  313 bits (801), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 215/673 (31%), Positives = 326/673 (48%), Gaps = 125/673 (18%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VI+ DP + ++++G+P   A  LTYPE VTP+N+ KL
Sbjct: 268  LKGKEGRLRGNLMGKRVDFSARTVIAGDPNIEIDQVGVPRSIAKNLTYPEVVTPYNIDKL 327

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
            ++ + NG   HPGA  Y+ + S  R+     +R S             + G D   +  G
Sbjct: 328  QEMVQNGPNEHPGA-KYVIRDSGERI----DLRYS-------------KRGGDIPLQI-G 368

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V R+L D DVV+ NRQP+LHK S+M H V+V+    T R++ +  S YNADFDGDEMN
Sbjct: 369  YRVERNLMDDDVVIFNRQPSLHKMSMMGHRVKVMP-YSTFRLNLSVTSPYNADFDGDEMN 427

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E +RAE   +     Q V P    P+  ++QD + +  + TK+DT +  D    
Sbjct: 428  LHLPQSEETRAEIRELCMVPKQIVSPQANKPVMGIVQDTLCALLMFTKRDTLMRLDMVMS 487

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            LL                PG   LI           P I KP+PLW+GKQ+ + +   I 
Sbjct: 488  LLLKV-------------PGWDGLIP---------TPCILKPQPLWSGKQIFSLI---IP 522

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
            +G   +           FFK                         H D      E     
Sbjct: 523  KGINCYT----------FFKD------------------------HPD-----NETAWCS 543

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAG 788
            PG+ +                ++I   +L+ G+I K        G+VH +    GS  A 
Sbjct: 544  PGDSR----------------VVIENGELLSGIICKQTVGAVRGGIVHVIFNELGSEAAK 587

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG 848
                   R+  +++  +GF+ G+ D  I  D   E   ++  +E   +   +    +ED 
Sbjct: 588  IFFGGTQRVVNLWMLSNGFSIGIGD-TIADDSAMESVGNII-TESYMRVDEMIKDTIEDR 645

Query: 849  AEIDP-IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKN 907
             +  P + LK   E              ++     L   +  + + E            N
Sbjct: 646  LDCLPGMTLKETFESGTN---------LELNRARDLAGKSVQTRLKEC-----------N 685

Query: 908  WISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFII 967
             +  M  SG+KGS +N  Q+++ +GQQ +EG+R+P     +TLP F   D++P++ GF+ 
Sbjct: 686  NVRKMVVSGSKGSYINVSQMTAAVGQQNVEGRRIPFGFRNRTLPHFTKDDYSPQSRGFVE 745

Query: 968  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADG 1027
            + +L GL PQE+YFH M GREGL+DTAVKT+ +GY+QR L+K LE + + YD +VR++ G
Sbjct: 746  NSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTVRNSLG 805

Query: 1028 SIVQFCYGEDGVD 1040
            SI++F YG DG+D
Sbjct: 806  SIIEFAYGHDGMD 818


>gi|426383939|ref|XP_004058534.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
            [Gorilla gorilla gorilla]
          Length = 1921

 Score =  313 bits (801), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNGA-AAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|344290440|ref|XP_003416946.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Loxodonta
            africana]
          Length = 1970

 Score =  313 bits (801), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|426238812|ref|XP_004013338.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Ovis aries]
          Length = 1897

 Score =  313 bits (801), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNGA-AAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHIN-------------------------------------- 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|2145091|gb|AAB58418.1| RNA polymerase II largest subunit [Mus musculus]
          Length = 1966

 Score =  313 bits (801), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|397135806|gb|AFO11398.1| RNA polymerase I, partial [Ogataea angusta]
          Length = 866

 Score =  313 bits (801), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 216/684 (31%), Positives = 334/684 (48%), Gaps = 146/684 (21%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VIS DP L ++++G+P   A  L+YPE VTP+N+ KL
Sbjct: 142  LKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKVLSYPEIVTPYNIQKL 201

Query: 431  RDSIINGAEIHPGATHYL-DKLSTMRLPPNKK---MRISIGRKLDTSRGAIVQPGKDSDN 486
             + + NG   HPGA + + D    + L  NK+   +++  G K++               
Sbjct: 202  TELVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIQLQYGWKVE--------------- 246

Query: 487  EFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDG 546
                    RHL D D VL NRQP+LHK S+MAH V+V+    T RM+ +  S YNADFDG
Sbjct: 247  --------RHLMDDDPVLFNRQPSLHKMSMMAHRVKVMP-YSTFRMNLSVTSPYNADFDG 297

Query: 547  DEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRD 606
            DEMN+H PQ   +RAE   I     Q V P +  P+  ++QD +     +T +DTF+  D
Sbjct: 298  DEMNLHVPQSYETRAELEQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFIEYD 357

Query: 607  EFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL 666
            +   + +        + ++ G              V+P  PAI KP+PLW+GKQV++   
Sbjct: 358  QVMNMCF-------WIPNWDG--------------VVP-QPAILKPKPLWSGKQVLSMC- 394

Query: 667  NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEV 726
                             +PQ  F  R +    S +   D G L                 
Sbjct: 395  -----------------IPQGIFLQRLDGSLLSPK---DSGML----------------- 417

Query: 727  VEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGS 784
                                       I   +++ GV++KA       GL+HTV    G 
Sbjct: 418  ---------------------------IVNGEIMFGVVNKATVGSSAGGLIHTVMREKGP 450

Query: 785  NTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEA-- 842
                 L   + ++   +L  +GF+ G+ D +   +  +     +  ++E  + V ++A  
Sbjct: 451  KVCAQLFGNIQKVVNYWLLHNGFSIGIGDAIADSETMKTITETIAIAKEKVQEVIMDAQK 510

Query: 843  --LELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGL 900
              LE E G  +                       F+ K++  LN+   S+  +   +E  
Sbjct: 511  NLLEAEPGMTVR--------------------ESFEQKVSKLLNEARDSAGKS---AETS 547

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
            LK +  N +  M T+G+KGS +N  Q+S+ +GQQ +EGKR+    + ++LP F   D++ 
Sbjct: 548  LKDS--NNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFADRSLPHFTKDDYSA 605

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
             + GF+ + +L GL PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD 
Sbjct: 606  ESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDIMVHYDG 665

Query: 1021 SVRDADGSIVQFCYGEDGVDVHQT 1044
            + R++ G ++QF YGEDG+D  Q 
Sbjct: 666  TTRNSLGDVIQFIYGEDGLDGTQV 689


>gi|380793277|gb|AFE68514.1| DNA-directed RNA polymerase II subunit RPB1, partial [Macaca mulatta]
          Length = 1658

 Score =  313 bits (801), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNGA-AAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHIN-------------------------------------- 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|170587086|ref|XP_001898310.1| DNA-directed RNA polymerase II largest subunit [Brugia malayi]
 gi|158594705|gb|EDP33289.1| DNA-directed RNA polymerase II largest subunit, putative [Brugia
            malayi]
          Length = 1943

 Score =  313 bits (801), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 237/768 (30%), Positives = 364/768 (47%), Gaps = 135/768 (17%)

Query: 286  VVLVPPIKFRLPS--KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMN 343
            V+ VPP+  R P+    G +  +   T  LS V++ N  L     N    A V+      
Sbjct: 317  VIPVPPLAVR-PAVVTFGSARNQDDLTHKLSDVVKTNNQLKRNEANGA-AAHVLAEDVKL 374

Query: 344  LQQSVNVLFD----GKNAAGQ---RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            LQ  V  L D    G  AA Q   R + S I Q L+ KEG  R  LMGKRV+++ R+VI+
Sbjct: 375  LQYHVATLIDNSIPGLPAATQKGGRPLKS-IKQRLKGKEGRIRGNLMGKRVDFSARTVIT 433

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
            PDP L ++ +G+P   A  +T+PE VTP+N+ KL++ +  G   +PGA + + +      
Sbjct: 434  PDPNLPIDTVGVPRTIAQNMTFPEIVTPFNIDKLQELVNRGDSQYPGAKYIIRE------ 487

Query: 457  PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
                  R+ + R    +    +QP         G  V RH++DGD+++ NRQPTLHK S+
Sbjct: 488  ---NGARVDL-RYHPRAADLHLQP---------GYRVERHMKDGDIIVFNRQPTLHKMSM 534

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            M H V++L    T R++ +  + YNADFDGDEMN+H PQ   ++AE   I     Q + P
Sbjct: 535  MGHKVKILPW-STFRLNLSVTTPYNADFDGDEMNLHLPQSLETKAEVSEIAMVPRQLITP 593

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
                P+  ++QD + +  ++TK+D F+       LL         + ++ GK  Q     
Sbjct: 594  QANKPVMGIVQDTLTAVRMMTKRDVFIELPRMMDLLMQ-------MPNWDGKVPQ----- 641

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
                      PAI KP+PLWTGKQV T +                  +P +    R ++ 
Sbjct: 642  ----------PAILKPKPLWTGKQVFTLI------------------IPGNVNVLRTHST 673

Query: 697  KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
               D                 + +G  K +    PG+ K                ++I  
Sbjct: 674  HPDD-----------------EDNGPYKWI---SPGDTK----------------VIIEH 697

Query: 757  NDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
             +L+ G+I           L+H V    G   A    S +  +   +L   G T G+ D 
Sbjct: 698  GELLSGIICSRTIGRSAGNLLHVVTLELGWEVAAHFYSHIQTVVNAWLLAEGHTIGIGDT 757

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
            +  +   R+        +E  ++  L+ +E+ + A  D      E+E      G+     
Sbjct: 758  IADQATYRD-------IQETIRKAKLDVVEVIEKAHND------ELEPT---PGNTLRQT 801

Query: 875  FDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
            F+  +   LN  +  +       LSE        N    M  +G+KGSK+N  Q+ + +G
Sbjct: 802  FENMVNRILNDARDRTGGSAQRSLSE-------YNNFKAMVVAGSKGSKINISQVIACVG 854

Query: 933  QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
            QQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+D
Sbjct: 855  QQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLID 914

Query: 993  TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            TAVKT+ +GY+QR LIK +E + ++YD +VR++ G +VQ  YGEDG+D
Sbjct: 915  TAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLGQLVQLRYGEDGLD 962



 Score = 87.0 bits (214), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 63/92 (68%), Gaps = 1/92 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            A++ A+K   N    +  +  ++ +F  ++ QPGE VG +A+QS+GEP+TQMTLNTFH A
Sbjct: 1116 AKRMAEKHRLNSEGFEWLIGEIESRFKQAIVQPGEMVGAIAAQSLGEPATQMTLNTFHYA 1175

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITC 1201
            G    NVTLG+PRL+EI+ + SK  KTP +T 
Sbjct: 1176 GVSAKNVTLGVPRLKEIINV-SKKPKTPSLTV 1206



 Score = 48.5 bits (114), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRR--EVEKCV 58
           C TC      CPGHF HI+L  PV++    +    LL+ +CF+C      +    V++ +
Sbjct: 139 CMTCAGSLADCPGHFAHIELAKPVFHIGFLSKTLKLLRCVCFYCSRLMVDKDSPRVKELL 198

Query: 59  RK 60
           RK
Sbjct: 199 RK 200


>gi|4808164|emb|CAB42795.1| largest subunit of the RNA polymerase II complex [Drosophila guanche]
 gi|40217263|emb|CAD68001.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217265|emb|CAD70679.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217267|emb|CAD70680.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217269|emb|CAD70681.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217271|emb|CAD70682.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217273|emb|CAD70683.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217275|emb|CAD70684.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217277|emb|CAD70685.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217279|emb|CAD70686.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217281|emb|CAD70687.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217283|emb|CAD70688.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217285|emb|CAD70689.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217287|emb|CAD70690.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217289|emb|CAD70691.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217291|emb|CAD70692.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217293|emb|CAD70693.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217295|emb|CAD70694.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217297|emb|CAD70695.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217299|emb|CAD70696.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217301|emb|CAD70697.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217303|emb|CAD70698.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217305|emb|CAD70699.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217307|emb|CAD70700.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217309|emb|CAD70701.1| RNA polymerase II large subunit [Drosophila guanche]
          Length = 1889

 Score =  313 bits (801), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 240/805 (29%), Positives = 368/805 (45%), Gaps = 144/805 (17%)

Query: 252  EKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVME 306
            E++WE    +   I+D +    G   K A      + V+ VPP+  R P+    G +  +
Sbjct: 211  ERVWE----ILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVR-PAVVMFGAAKNQ 265

Query: 307  HPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS- 365
               T  LS +++AN  L     +    A VI      LQ  V  L D       R M   
Sbjct: 266  DDLTHKLSDIIKANNELRKNEASG-AAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324

Query: 366  -----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE 420
                  I   L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  LT+PE
Sbjct: 325  GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384

Query: 421  RVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP 480
             VTP+N+ ++++ +  G   +PGA + +                  G ++D        P
Sbjct: 385  LVTPFNIDRMQELVRRGNSQYPGAKYIVR---------------DNGERIDLR----FHP 425

Query: 481  GKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 539
             K SD   + G  V RHL+D D+V+ NRQPTLHK S+M H V+VL    T RM+ +  S 
Sbjct: 426  -KSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPW-STFRMNLSCTSP 483

Query: 540  YNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
            YNADFDGDEMN+H PQ   +RAE  NI     Q + P    P+  ++QD + +   +TK+
Sbjct: 484  YNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKR 543

Query: 600  DTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
            D F+ R++   LL         L ++ GK  Q               P I KP PLWTGK
Sbjct: 544  DVFITREQVMNLLMF-------LPTWDGKMPQ---------------PCILKPRPLWTGK 581

Query: 660  QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
            Q+ + +                  +P +                     + +T+  H D 
Sbjct: 582  QIFSLI------------------IPGNV-------------------NMIRTHSTHPD- 603

Query: 720  SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHT 777
                            E +    K     + K+++   DL+ G++ K         L+H 
Sbjct: 604  ----------------EEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHI 647

Query: 778  VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKR 837
                 G   AG     +  +   +L + G + G+ D +     + +  N +  + +  K 
Sbjct: 648  CFLELGHEIAGRFYGNIQTVINNWLLLEGHSIGIGDTI----ADPQTYNEIQMAIKKAKD 703

Query: 838  VHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN---KHTSSSVINE 894
              +  ++     E++P              G+     F+ K+   LN     T  S    
Sbjct: 704  DVINVIQKAHNMELEPTP------------GNTLRQTFENKVNRILNDARDKTGGSAKKS 751

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
            L        T  N +  M  SG+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F 
Sbjct: 752  L--------TEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFI 803

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
              D+ P + GF+ + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR LIK +E +
Sbjct: 804  KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 863

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGV 1039
             ++YD +VR++ G ++Q  YGEDG+
Sbjct: 864  MVNYDGTVRNSVGQLIQLRYGEDGL 888



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F  + A PGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ I 
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI- 1122

Query: 1191 SKDIKTPVITCPLLVG 1206
            SK  K P +T  L  G
Sbjct: 1123 SKKPKAPSLTVFLTGG 1138



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 13/115 (11%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC-------HHFK----- 48
           C+TC      CPGHFGHIDL  PV++         +L+ +CF+C       H+ K     
Sbjct: 67  CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 49  -ASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTP 102
             S+ +  K +  +  + KG  I     D+DL  ++  P+ +       C    P
Sbjct: 127 VKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQPDPNKKPGHGGCGHYQP 181


>gi|825713|emb|CAA52862.1| RNA polymerase II largest subunit [Homo sapiens]
          Length = 1970

 Score =  313 bits (801), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDLLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|296476824|tpg|DAA18939.1| TPA: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Bos
            taurus]
          Length = 1323

 Score =  313 bits (801), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNGA-AAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHIN-------------------------------------- 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|320580596|gb|EFW94818.1| RNA polymerase II largest subunit [Ogataea parapolymorpha DL-1]
          Length = 1730

 Score =  313 bits (801), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 230/752 (30%), Positives = 363/752 (48%), Gaps = 157/752 (20%)

Query: 310  TVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQ--------R 361
            T  L+ +L+ANI +    ++   + + +++ +  L Q     +   + AGQ        R
Sbjct: 265  TYKLADILKANINVQRFEMD--GSPQHVISEFEALLQYHVATYMDNDIAGQPQALQKSGR 322

Query: 362  DMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPER 421
             + S I   L+ KEG  R  LMGKRV+++ R+VIS DP L ++++G+P   A  L+YPE 
Sbjct: 323  PIKS-IRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKVLSYPEI 381

Query: 422  VTPWNVVKLRDSIINGAEIHPGATHYL-DKLSTMRLPPNKK---MRISIGRKLDTSRGAI 477
            VTP+N+ KL + + NG   HPGA + + D    + L  NK+   +++  G K++      
Sbjct: 382  VTPYNIQKLTELVRNGPNEHPGAKYVIRDSGDRIDLRYNKRAGDIQLQYGWKVE------ 435

Query: 478  VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 537
                             RHL D D VL NRQP+LHK S+MAH V+V+    T RM+ +  
Sbjct: 436  -----------------RHLMDDDPVLFNRQPSLHKMSMMAHRVKVMP-YSTFRMNLSVT 477

Query: 538  STYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
            S YNADFDGDEMN+H PQ   +RAE   I     Q V P +  P+  ++QD +     +T
Sbjct: 478  SPYNADFDGDEMNLHVPQSYETRAELEQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMT 537

Query: 598  KKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWT 657
             +DTF+  D+   + +        + ++ G              V+P  PAI KP+PLW+
Sbjct: 538  LRDTFIEYDQVMNMCF-------WIPNWDG--------------VVP-QPAILKPKPLWS 575

Query: 658  GKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHK 717
            GKQV++                    +PQ  F  R +    S +   D G L        
Sbjct: 576  GKQVLSMC------------------IPQGIFLQRLDGSLLSPK---DSGML-------- 606

Query: 718  DKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLV 775
                                                I   +++ GV++KA       GL+
Sbjct: 607  ------------------------------------IVNGEIMFGVVNKATVGSSAGGLI 630

Query: 776  HTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIG 835
            HTV    G      L   + ++   +L  +GF+ G+ D +   +  +     +  ++E  
Sbjct: 631  HTVMREKGPKVCAQLFGNIQKVVNYWLLHNGFSIGIGDAIADSETMKTITETIAIAKEKV 690

Query: 836  KRVHLEA----LELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSV 891
            + V ++A    LE E G  +                       F+ K++  LN+   S+ 
Sbjct: 691  QEVIMDAQKNLLEAEPGMTVR--------------------ESFEQKVSKLLNEARDSAG 730

Query: 892  INELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLP 951
             +   +E  LK +  N +  M T+G+KGS +N  Q+S+ +GQQ +EGKR+    + ++LP
Sbjct: 731  KS---AETSLKDS--NNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFADRSLP 785

Query: 952  SFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 1011
             F   D++  + GF+ + +L GL PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K L
Sbjct: 786  HFTKDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKAL 845

Query: 1012 ECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
            E + + YD + R++ G ++QF YGEDG+D  Q
Sbjct: 846  EDIMVHYDGTTRNSLGDVIQFIYGEDGLDGTQ 877



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 67/92 (72%), Gaps = 1/92 (1%)

Query: 1112 KFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGR 1171
            +  ++F  N+ A +  L  ++ +F+ SL  PGE VG++A+QS+GEP+TQMTLNTFH AG 
Sbjct: 1031 RVLEEFRLNKDAFEWVLGTIEQQFLKSLVNPGEMVGVIAAQSIGEPATQMTLNTFHYAGV 1090

Query: 1172 GEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
               NVTLG+PRL+EIL +A K++KTP +T  L
Sbjct: 1091 SSKNVTLGVPRLKEILNVA-KNVKTPALTVYL 1121



 Score = 44.3 bits (103), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC +    CPGHFGHI+L  PV++    + +  + + +C  C
Sbjct: 67  CQTCSEDMQECPGHFGHIELAKPVFHIGFVSRIKKVCECVCMNC 110


>gi|390462987|ref|XP_003732945.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
            [Callithrix jacchus]
          Length = 1899

 Score =  313 bits (801), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 183  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 233

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 234  QGSARNQDDLTHKLADIVKINNQLRRNEQNGA-AAHVIAEDVKLLQFHVATMVDNELPGL 292

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 293  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 352

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 353  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 412

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 413  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 448

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 449  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 508

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 509  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 546

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 547  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 568

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 569  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 609

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 610  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 669

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 670  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 713

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 714  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 766

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 767  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 826

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 827  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 870



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1018 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1077

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1078 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1111



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1  CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
          C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 38 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 81


>gi|125983594|ref|XP_001355562.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
 gi|54643878|gb|EAL32621.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
          Length = 1889

 Score =  313 bits (801), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 240/805 (29%), Positives = 368/805 (45%), Gaps = 144/805 (17%)

Query: 252  EKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVME 306
            E++WE    +   I+D +    G   K A      + V+ VPP+  R P+    G +  +
Sbjct: 211  ERVWE----ILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVR-PAVVMFGAAKNQ 265

Query: 307  HPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS- 365
               T  LS +++AN  L     +    A VI      LQ  V  L D       R M   
Sbjct: 266  DDLTHKLSDIIKANNELRKNEASG-AAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324

Query: 366  -----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE 420
                  I   L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  LT+PE
Sbjct: 325  GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384

Query: 421  RVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP 480
             VTP+N+ ++++ +  G   +PGA + +                  G ++D        P
Sbjct: 385  LVTPFNIDRMQELVRRGNSQYPGAKYIVR---------------DNGERIDLR----FHP 425

Query: 481  GKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 539
             K SD   + G  V RHL+D D+V+ NRQPTLHK S+M H V+VL    T RM+ +  S 
Sbjct: 426  -KSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPW-STFRMNLSCTSP 483

Query: 540  YNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
            YNADFDGDEMN+H PQ   +RAE  NI     Q + P    P+  ++QD + +   +TK+
Sbjct: 484  YNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKR 543

Query: 600  DTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
            D F+ R++   LL         L ++ GK  Q               P I KP PLWTGK
Sbjct: 544  DVFITREQVMNLLMF-------LPTWDGKMPQ---------------PCILKPRPLWTGK 581

Query: 660  QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
            Q+ + +                  +P +                     + +T+  H D 
Sbjct: 582  QIFSLI------------------IPGNV-------------------NMIRTHSTHPD- 603

Query: 720  SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHT 777
                            E +    K     + K+++   DL+ G++ K         L+H 
Sbjct: 604  ----------------EEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHI 647

Query: 778  VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKR 837
                 G   AG     +  +   +L + G + G+ D +     + +  N +  + +  K 
Sbjct: 648  CFLELGHEIAGRFYGNIQTVINNWLLLEGHSIGIGDTI----ADPQTYNEIQMAIKKAKD 703

Query: 838  VHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN---KHTSSSVINE 894
              +  ++     E++P              G+     F+ K+   LN     T  S    
Sbjct: 704  DVINVIQKAHNMELEPTP------------GNTLRQTFENKVNRILNDARDKTGGSAKKS 751

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
            L        T  N +  M  SG+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F 
Sbjct: 752  L--------TEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFI 803

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
              D+ P + GF+ + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR LIK +E +
Sbjct: 804  KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 863

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGV 1039
             ++YD +VR++ G ++Q  YGEDG+
Sbjct: 864  MVNYDGTVRNSVGQLIQLRYGEDGL 888



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F  + A PGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ I 
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI- 1122

Query: 1191 SKDIKTPVITCPLLVG 1206
            SK  K P +T  L  G
Sbjct: 1123 SKKPKAPSLTVFLTGG 1138



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 13/115 (11%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC-------HHFK----- 48
           C+TC      CPGHFGHIDL  PV++         +L+ +CF+C       H+ K     
Sbjct: 67  CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 49  -ASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTP 102
             S+ +  K +  +  + KG  I     D+DL  ++  P+ +       C    P
Sbjct: 127 VKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQPDPNKKPGHGGCGHYQP 181


>gi|407849768|gb|EKG04383.1| DNA-directed RNA polymerase III largest subunit, putative
            [Trypanosoma cruzi]
          Length = 1553

 Score =  313 bits (801), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 235/778 (30%), Positives = 356/778 (45%), Gaps = 144/778 (18%)

Query: 282  FFLGVVLVPPIKFR-LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
              +  +LVPP+  R   S G  ++ +   T   + +L ++  L +  ++    A      
Sbjct: 258  LLVTTLLVPPVSVRPRGSSGTANIRDDDLTGQYNDILISSDTLQDGSID----ASKYTET 313

Query: 341  WMNLQQSVNVLFDGKNAAGQRDMASG----ICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            W  LQ     L D         M +       Q L+ K G FR  L GKRV+++ RSVIS
Sbjct: 314  WEMLQMRAARLLDSALPGFPPHMRTADVKSYAQRLKGKHGRFRGNLSGKRVDFSGRSVIS 373

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATH-YLDKLSTMR 455
            PDP L V+E+ +P   A  LTYP+RV   N+  +R  + NG  +HPGA   YL +  + +
Sbjct: 374  PDPNLDVDELAVPLRVARVLTYPQRVFKSNLELMRRLVRNGPNVHPGAVAVYLAQEGSKK 433

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
               +++ R S+  +L                   G +V RH+ +GDVVL NRQP+LH+ S
Sbjct: 434  SLNHERDRESLSARLSI-----------------GDVVERHVMNGDVVLFNRQPSLHRIS 476

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            +MAH  RVL   +T R +   C+ YNADFDGDEMNVH  Q E +RAEA+ +++     + 
Sbjct: 477  MMAHRARVLPF-RTFRFNECCCAPYNADFDGDEMNVHLVQTEEARAEAFELMSTAKNIIN 535

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 635
              NG+P+ +  QD +V+A L+T +D F +R +       S + S  LG  T         
Sbjct: 536  AKNGEPIIACTQDFLVAAYLVTSRDVFFDRSQM------SWMVSHWLGPVT--------- 580

Query: 636  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
                Q  LP+ P I KP  LWTGKQ    V   I R  P   V    +    F+      
Sbjct: 581  ----QFRLPI-PTILKPTELWTGKQ----VFELILRPSPEVNVLLNLEAATKFYT----- 626

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
                                   K G+     EG                      +   
Sbjct: 627  -----------------------KKGRHDCAAEGY---------------------VAFL 642

Query: 756  KNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
             +  + G +DK      A  GL   +  L G      ++S +++  + +L  +GF+ G+ 
Sbjct: 643  DSRFISGRLDKKLLGGGAKDGLFARLHTLSGGGYTARIMSRIAQFTSRYLTNYGFSLGLG 702

Query: 813  DLL---ILKDKERE-------RKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEK 862
            D+    +L +++           + L  S + G+   L  L +    E    +L +E+ K
Sbjct: 703  DVAPTPLLNEQKAAVLARSFATCDSLIESAKTGRMEPLPGLTVRQSLEA---RLNAELSK 759

Query: 863  AMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV 922
                 G AAV    +   + L                           +M  SG+KGS +
Sbjct: 760  VRDECGTAAVETLSVDTNTPL---------------------------MMVQSGSKGSAL 792

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  Q+ + +GQQ + GKR+      ++LP F+ ++ AP A GF+ + F +GL P E++FH
Sbjct: 793  NIAQMMACVGQQTVSGKRILNAFQDRSLPHFYRFEEAPSARGFVANSFYSGLTPTEFFFH 852

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             MAGREGLVDTAVKT+ +GY+ R L+K +E L + YD + R+  G +VQF +GEDG+D
Sbjct: 853  TMAGREGLVDTAVKTAETGYIYRRLMKAMENLSVRYDGTARNTRGDVVQFRFGEDGLD 910



 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 55/77 (71%), Gaps = 1/77 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            FL     K++L   +PG P G +A+QSVGEPSTQMTL TFH AG   M++T G+PRL EI
Sbjct: 1132 FLAQCASKYILKACEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQGVPRLVEI 1191

Query: 1187 LTIASKDIKTPVITCPL 1203
            +  A+++I TPV+T P+
Sbjct: 1192 IN-ANRNIATPVVTAPV 1207



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 31/61 (50%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG R   C GH GHIDL  PV++   F  +  + + IC  C H      E+E   R+
Sbjct: 74  CATCGLRSIDCIGHPGHIDLETPVFHLGFFTTILRICRTICKRCSHLLLDDAEIEYYKRR 133

Query: 61  L 61
           L
Sbjct: 134 L 134


>gi|4808162|emb|CAB42796.1| largest subunit of the RNA polymerase II complex [Drosophila
            madeirensis]
          Length = 1889

 Score =  313 bits (801), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 240/805 (29%), Positives = 368/805 (45%), Gaps = 144/805 (17%)

Query: 252  EKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVME 306
            E++WE    +   I+D +    G   K A      + V+ VPP+  R P+    G +  +
Sbjct: 211  ERVWE----ILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVR-PAVVMFGAAKNQ 265

Query: 307  HPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS- 365
               T  LS +++AN  L     +    A VI      LQ  V  L D       R M   
Sbjct: 266  DDLTHKLSDIIKANNELRKNEASG-AAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324

Query: 366  -----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE 420
                  I   L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  LT+PE
Sbjct: 325  GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384

Query: 421  RVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP 480
             VTP+N+ ++++ +  G   +PGA + +                  G ++D        P
Sbjct: 385  LVTPFNIDRMQELVRRGNSQYPGAKYIVR---------------DNGERIDLR----FHP 425

Query: 481  GKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 539
             K SD   + G  V RHL+D D+V+ NRQPTLHK S+M H V+VL    T RM+ +  S 
Sbjct: 426  -KSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWS-TFRMNLSCTSP 483

Query: 540  YNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
            YNADFDGDEMN+H PQ   +RAE  NI     Q + P    P+  ++QD + +   +TK+
Sbjct: 484  YNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKR 543

Query: 600  DTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
            D F+ R++   LL         L ++ GK  Q               P I KP PLWTGK
Sbjct: 544  DVFITREQVMNLLMF-------LPTWDGKMPQ---------------PCILKPRPLWTGK 581

Query: 660  QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
            Q+ + +                  +P +                     + +T+  H D 
Sbjct: 582  QIFSLI------------------IPGNV-------------------NMIRTHSTHPD- 603

Query: 720  SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHT 777
                            E +    K     + K+++   DL+ G++ K         L+H 
Sbjct: 604  ----------------EEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHI 647

Query: 778  VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKR 837
                 G   AG     +  +   +L + G + G+ D +     + +  N +  + +  K 
Sbjct: 648  CFLELGHEIAGRFYGNIQTVINNWLLLEGHSIGIGDTI----ADPQTYNEIQMAIKKAKD 703

Query: 838  VHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN---KHTSSSVINE 894
              +  ++     E++P              G+     F+ K+   LN     T  S    
Sbjct: 704  DVINVIQKAHNMELEPTP------------GNTLRQTFENKVNRILNDARDKTGGSAKKS 751

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
            L        T  N +  M  SG+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F 
Sbjct: 752  L--------TEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFI 803

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
              D+ P + GF+ + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR LIK +E +
Sbjct: 804  KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 863

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGV 1039
             ++YD +VR++ G ++Q  YGEDG+
Sbjct: 864  MVNYDGTVRNSVGQLIQLRYGEDGL 888



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F  + A PGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ I 
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI- 1122

Query: 1191 SKDIKTPVITCPLLVG 1206
            SK  K P +T  L  G
Sbjct: 1123 SKKPKAPSLTVFLTGG 1138



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 13/115 (11%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC-------HHFK----- 48
           C+TC      CPGHFGHIDL  PV++         +L+ +CF+C       H+ K     
Sbjct: 67  CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 49  -ASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTP 102
             S+ +  K +  +  + KG  I     D+DL  ++  P+ +       C    P
Sbjct: 127 VKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQPDPNKKPGHGGCGHYQP 181


>gi|397477903|ref|XP_003846225.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1 [Pan paniscus]
          Length = 1719

 Score =  313 bits (801), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNGA-AAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|294495210|ref|YP_003541703.1| DNA-directed RNA polymerase, subunit A' [Methanohalophilus mahii DSM
            5219]
 gi|292666209|gb|ADE36058.1| DNA-directed RNA polymerase, subunit A' [Methanohalophilus mahii DSM
            5219]
          Length = 886

 Score =  313 bits (801), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 252/838 (30%), Positives = 385/838 (45%), Gaps = 154/838 (18%)

Query: 231  FKKQKDLFSG--PLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVL 288
            F+K  D       L P++++D +E++ +++ ++     +         A      L V+ 
Sbjct: 168  FEKPSDYIENDYKLTPTEIRDRLERIPDDDLKVMGMDPE--------SARPEWMVLTVLA 219

Query: 289  VPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANI-YLANAYVNQPDNAKVIVARWMNLQ 345
            VPP+  R PS   +S    E   T  L  +++ N  +  N     P    +I   W  LQ
Sbjct: 220  VPPVTVR-PSITLESGQRSEDDLTHKLVDIIRINQRFQENRDAGAPQ--LIIEDLWELLQ 276

Query: 346  QSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDP 399
              +   FD    G   A  R       + Q L+ KEG FR  L GKRVN++ R+V+SPDP
Sbjct: 277  YHLTTFFDNEVSGVPPARHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVNFSARTVVSPDP 336

Query: 400  YLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPN 459
             L++NE+G+P   A  +T P RV   N+  +R  +  G E HPGA +Y+ +    RL   
Sbjct: 337  NLSINEVGVPYQIAKHMTIPVRVISRNLEMMRAYVARGGETHPGA-NYVFREDGRRLKIT 395

Query: 460  KKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAH 519
            +  +  +  KL+                  G  V R +QDGD+VL NRQP+LHK SIMAH
Sbjct: 396  EANKEELSEKLEP-----------------GWTVERQMQDGDIVLFNRQPSLHKMSIMAH 438

Query: 520  VVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNG 579
             V+VL   KT +++ A C  YNADFDGDEMN+H  Q E SRAEA  ++      + P  G
Sbjct: 439  KVKVLPN-KTFKLNPAVCPPYNADFDGDEMNMHVLQTEESRAEANILMQVQENILSPRFG 497

Query: 580  DPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSE 639
             P+   I DHI    LLT+ +  +++++  +LL                        +SE
Sbjct: 498  GPIIGGIHDHISGMFLLTRNENMISKNDALELL-----------------------RKSE 534

Query: 640  QEVLPLLPAIWKP--EPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADK 697
               LP  PA +    +P WTGKQ+ + +                  LP+D          
Sbjct: 535  VRELPE-PAGYTDVGDPFWTGKQIFSQI------------------LPKDL--------- 566

Query: 698  QSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE---AEKNKSKEKELSEEKLLI 754
                           N   K     K +V +G+  E       E  +     + E+ +  
Sbjct: 567  ---------------NLEFKANVCFKCDVCKGRDCEYDAYVVVENGELVTGTIDEKAIGA 611

Query: 755  YKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
            +K  ++  ++ +     YG     Q           +  ++RL    +   G + G+ D 
Sbjct: 612  FKGKILDSIVKR-----YGTTEAAQ----------FVDDMTRLAIRGVMRTGLSFGISD- 655

Query: 815  LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
               +D  RE K ++    E  +    E ++  +  E++P+             G      
Sbjct: 656  ---EDIPREAKLNIDEELERAENEVAELIQAYEAKELEPLP------------GRTLAET 700

Query: 875  FDMKMTSQLNK---HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHL 931
             ++K+   L K   HT +   N L   GL     +N   +M  SGA+GS +N  Q+++ +
Sbjct: 701  IELKIMQSLGKARDHTGTIAGNHL---GL-----ENSAVIMAKSGARGSMLNLTQMAACV 752

Query: 932  GQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLV 991
            GQQ + G+R+ R   G+TLP F   D    A GF+   + +GL P EY+FH + GREGLV
Sbjct: 753  GQQAVRGERIRRGYEGRTLPHFDRGDLGADAHGFVKSSYKSGLNPTEYFFHSVGGREGLV 812

Query: 992  DTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISK 1049
            DTAV+TS+SGYLQR L+  L+ L++ YD SVR+  G IVQF YGEDG+D  ++ + S+
Sbjct: 813  DTAVRTSQSGYLQRRLVNALQDLEVQYDRSVRETRGVIVQFKYGEDGIDSTKSDYSSE 870



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 28/47 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHF 47
           CKTCG R   CPGHFGHI+LV PV +     ++  +L+  C  C H 
Sbjct: 69  CKTCGGRAGECPGHFGHIELVAPVLHVGFNKIIRKILRSTCRNCSHL 115


>gi|9587179|gb|AAF89193.1|AF272643_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587181|gb|AAF89194.1|AF272644_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587183|gb|AAF89195.1|AF272645_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587185|gb|AAF89196.1|AF272646_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587187|gb|AAF89197.1|AF272647_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587189|gb|AAF89198.1|AF272648_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587191|gb|AAF89199.1|AF272649_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587193|gb|AAF89200.1|AF272650_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587195|gb|AAF89201.1|AF272651_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587197|gb|AAF89202.1|AF272652_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587199|gb|AAF89203.1|AF272653_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|4808177|emb|CAB42800.1| largest subunit of the RNA polymerase II complex [Drosophila
            subobscura]
          Length = 1889

 Score =  313 bits (801), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 240/805 (29%), Positives = 368/805 (45%), Gaps = 144/805 (17%)

Query: 252  EKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVME 306
            E++WE    +   I+D +    G   K A      + V+ VPP+  R P+    G +  +
Sbjct: 211  ERVWE----ILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVR-PAVVMFGAAKNQ 265

Query: 307  HPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS- 365
               T  LS +++AN  L     +    A VI      LQ  V  L D       R M   
Sbjct: 266  DDLTHKLSDIIKANNELRKNEASG-AAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324

Query: 366  -----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE 420
                  I   L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  LT+PE
Sbjct: 325  GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384

Query: 421  RVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP 480
             VTP+N+ ++++ +  G   +PGA + +                  G ++D        P
Sbjct: 385  LVTPFNIDRMQELVRRGNSQYPGAKYIVR---------------DNGERIDLR----FHP 425

Query: 481  GKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 539
             K SD   + G  V RHL+D D+V+ NRQPTLHK S+M H V+VL    T RM+ +  S 
Sbjct: 426  -KSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWS-TFRMNLSCTSP 483

Query: 540  YNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
            YNADFDGDEMN+H PQ   +RAE  NI     Q + P    P+  ++QD + +   +TK+
Sbjct: 484  YNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKR 543

Query: 600  DTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
            D F+ R++   LL         L ++ GK  Q               P I KP PLWTGK
Sbjct: 544  DVFITREQVMNLLMF-------LPTWDGKMPQ---------------PCILKPRPLWTGK 581

Query: 660  QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
            Q+ + +                  +P +                     + +T+  H D 
Sbjct: 582  QIFSLI------------------IPGNV-------------------NMIRTHSTHPD- 603

Query: 720  SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHT 777
                            E +    K     + K+++   DL+ G++ K         L+H 
Sbjct: 604  ----------------EEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHI 647

Query: 778  VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKR 837
                 G   AG     +  +   +L + G + G+ D +     + +  N +  + +  K 
Sbjct: 648  CFLELGHEIAGRFYGNIQTVINNWLLLEGHSIGIGDTI----ADPQTYNEIQMAIKKAKD 703

Query: 838  VHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN---KHTSSSVINE 894
              +  ++     E++P              G+     F+ K+   LN     T  S    
Sbjct: 704  DVINVIQKAHNMELEPTP------------GNTLRQTFENKVNRILNDARDKTGGSAKKS 751

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
            L        T  N +  M  SG+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F 
Sbjct: 752  L--------TEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFI 803

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
              D+ P + GF+ + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR LIK +E +
Sbjct: 804  KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 863

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGV 1039
             ++YD +VR++ G ++Q  YGEDG+
Sbjct: 864  MVNYDGTVRNSVGQLIQLRYGEDGL 888



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F  + A PGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ I 
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI- 1122

Query: 1191 SKDIKTPVITCPLLVG 1206
            SK  K P +T  L  G
Sbjct: 1123 SKKPKAPSLTVFLTGG 1138



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 13/115 (11%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC-------HHFK----- 48
           C+TC      CPGHFGHIDL  PV++         +L+ +CF+C       H+ K     
Sbjct: 67  CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 49  -ASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTP 102
             S+ +  K +  +  + KG  I     D+DL  ++  P+ +       C    P
Sbjct: 127 VKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQPDPNKKPGHGGCGHYQP 181


>gi|395748505|ref|XP_002827010.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1 [Pongo abelii]
          Length = 1967

 Score =  312 bits (800), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 239/824 (29%), Positives = 376/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E   C F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE---C-FVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|120561237|gb|ABM27004.1| RNA polymerase II largest subunit, partial [Chytriomyces hyalinus]
          Length = 960

 Score =  312 bits (800), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 240/815 (29%), Positives = 379/815 (46%), Gaps = 137/815 (16%)

Query: 241  PLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKG 300
            PL     K I+EK+ +    L     D  +  +            V+ VPP   R PS  
Sbjct: 97   PLYADQAKSILEKITDETCRLLGLNPDSSRPEW--------MIFTVIPVPPPCMR-PSVH 147

Query: 301  GDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD----GKN 356
             D          L+ +L  NI   N  + + +++K  +     LQ  +    D    G  
Sbjct: 148  IDVANGGKGEDDLTHML-TNIIRYNNLLGKNESSKTAIEYKEQLQIHITTYIDNEVSGVP 206

Query: 357  AAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFAL 414
             A Q+   M   +   L+ KEG  R  LMGKRV+++ R+VI+ DP++++ E+G+P   A 
Sbjct: 207  PALQKGGRMIKSLSARLKGKEGRIRGHLMGKRVDFSARTVITGDPHISIEEVGVPLSVAK 266

Query: 415  RLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSR 474
             LT+PERVT +N+ +++ +++N A+ +PGA + +++                GR++D   
Sbjct: 267  TLTFPERVTSYNLDRMQ-ALVNNAKNYPGARYVINER---------------GRRID--- 307

Query: 475  GAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY 534
               ++  K +     G +V RH+  GD VL NRQP+LHK S+MAH+VRV+    + R++ 
Sbjct: 308  ---LEVAKTTPLIEIGDIVERHMVTGDTVLFNRQPSLHKMSMMAHIVRVMP-YSSFRLNV 363

Query: 535  ANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAA 594
              C+ YNADFDGDEMN+H PQ   + AE   +   ++  V P +  P+  L+QD +    
Sbjct: 364  NVCAPYNADFDGDEMNLHMPQSYETVAELQTLSMVSSLLVSPQSNKPVNGLVQDALCGIR 423

Query: 595  LLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEP 654
             LT +DTF+N ++   L                      ++   E  V+P  PAI+KP P
Sbjct: 424  KLTMRDTFVNFEDMMDL----------------------VMCLKEFPVIP-PPAIFKPIP 460

Query: 655  LWTGKQVITAVLNHITRGRPPFVVERGGKLP----QDFFKTRFNADKQSDRKKNDKGKLS 710
            LWTGKQ+I+  L        P +   G  L     +D F++      ++  +K +    S
Sbjct: 461  LWTGKQIISLCL--------PDIDLTGNTLTHADHEDIFRSTTKDLNETCTRKAESEFYS 512

Query: 711  KTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF- 769
             T                                   ++ ++LI    +V G + K    
Sbjct: 513  ATP----------------------------------TDSRVLIQSGIIVHGYLCKKTVG 538

Query: 770  -ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHL 828
             +  G+VH +   +G   A   +   SR+   +L   GF+ G+ D L+          H 
Sbjct: 539  ASSGGIVHIIYNDHGPRAACDFIDNSSRIVNAWLTNSGFSVGIGDALV------SEITHA 592

Query: 829  HGSEEIGKRVH--LEALELEDGAEIDPI-KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNK 885
              S  I  ++H   + +E     E+ P      E  K  +  G  A A      T+ ++ 
Sbjct: 593  VFSSTIDTQLHKVQKTIESYHANELKPEGNFDCEQTKENQIVGLLAKARDSAGKTTLISG 652

Query: 886  HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMV 945
            H                    N +  M  +G+KGS +N  Q+S+ +GQQ +EGKR+P   
Sbjct: 653  HPD------------------NNLKQMVEAGSKGSVLNICQVSACVGQQMVEGKRIPFGF 694

Query: 946  SGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQR 1005
              +TLP F  +D +P A GF+ + F+ GL P E +FH M GREGL+DTA+KT+ +GY+QR
Sbjct: 695  KDRTLPHFTKYDHSPAARGFVRNSFVKGLTPSELFFHAMGGREGLIDTAIKTAETGYIQR 754

Query: 1006 CLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             L+K LE + +  D +VR++   I+QF YGEDG D
Sbjct: 755  RLVKALEDITVKSDGTVRNSRDDIIQFYYGEDGFD 789


>gi|4808166|emb|CAB42797.1| largest subunit of the RNA polymerase II complex [Drosophila
            pseudoobscura]
          Length = 1811

 Score =  312 bits (800), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 240/805 (29%), Positives = 368/805 (45%), Gaps = 144/805 (17%)

Query: 252  EKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVME 306
            E++WE    +   I+D +    G   K A      + V+ VPP+  R P+    G +  +
Sbjct: 133  ERVWE----ILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVR-PAVVMFGAAKNQ 187

Query: 307  HPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS- 365
               T  LS +++AN  L     +    A VI      LQ  V  L D       R M   
Sbjct: 188  DDLTHKLSDIIKANNELRKNEASG-AAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 246

Query: 366  -----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE 420
                  I   L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  LT+PE
Sbjct: 247  GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 306

Query: 421  RVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP 480
             VTP+N+ ++++ +  G   +PGA + +                  G ++D        P
Sbjct: 307  LVTPFNIDRMQELVRRGNSQYPGAKYIVR---------------DNGERIDLR----FHP 347

Query: 481  GKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 539
             K SD   + G  V RHL+D D+V+ NRQPTLHK S+M H V+VL    T RM+ +  S 
Sbjct: 348  -KSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWS-TFRMNLSCTSP 405

Query: 540  YNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
            YNADFDGDEMN+H PQ   +RAE  NI     Q + P    P+  ++QD + +   +TK+
Sbjct: 406  YNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKR 465

Query: 600  DTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
            D F+ R++   LL         L ++ GK  Q               P I KP PLWTGK
Sbjct: 466  DVFITREQVMNLLMF-------LPTWDGKMPQ---------------PCILKPRPLWTGK 503

Query: 660  QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
            Q+ + +                  +P +                     + +T+  H D 
Sbjct: 504  QIFSLI------------------IPGNV-------------------NMIRTHSTHPD- 525

Query: 720  SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHT 777
                            E +    K     + K+++   DL+ G++ K         L+H 
Sbjct: 526  ----------------EEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHI 569

Query: 778  VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKR 837
                 G   AG     +  +   +L + G + G+ D +     + +  N +  + +  K 
Sbjct: 570  CFLELGHEIAGRFYGNIQTVINNWLLLEGHSIGIGDTI----ADPQTYNEIQMAIKKAKD 625

Query: 838  VHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN---KHTSSSVINE 894
              +  ++     E++P              G+     F+ K+   LN     T  S    
Sbjct: 626  DVINVIQKAHNMELEPTP------------GNTLRQTFENKVNRILNDARDKTGGSAKKS 673

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
            L        T  N +  M  SG+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F 
Sbjct: 674  L--------TEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFI 725

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
              D+ P + GF+ + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR LIK +E +
Sbjct: 726  KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 785

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGV 1039
             ++YD +VR++ G ++Q  YGEDG+
Sbjct: 786  MVNYDGTVRNSVGQLIQLRYGEDGL 810



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F  + A PGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ I 
Sbjct: 986  IETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI- 1044

Query: 1191 SKDIKTPVITCPLLVG 1206
            SK  K P +T  L  G
Sbjct: 1045 SKKPKAPSLTVFLTGG 1060



 Score = 42.4 bits (98), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 13/103 (12%)

Query: 13  GHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC-------HHFK------ASRREVEKCVR 59
           GHFGHIDL  PV++         +L+ +CF+C       H+ K       S+ +  K + 
Sbjct: 1   GHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVVKSKGQPRKRLA 60

Query: 60  KLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTP 102
            +  + KG  I     D+DL  ++  P+ +       C    P
Sbjct: 61  YVYDLCKGKTICEGGEDMDLTKDNQQPDPNKKPGHGGCGHYQP 103


>gi|296201388|ref|XP_002748007.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
            [Callithrix jacchus]
          Length = 1937

 Score =  312 bits (800), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 239/824 (29%), Positives = 376/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E   C F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 183  LSPERVHEIFKRISDEE---C-FVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 233

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 234  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 292

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 293  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 352

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 353  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 412

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 413  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 448

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 449  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 508

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PAI
Sbjct: 509  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 546

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 547  LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 568

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 569  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 609

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 610  KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 669

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 670  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 713

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 714  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 766

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 767  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 826

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 827  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 870



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1018 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1077

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1078 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1111



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1  CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
          C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 38 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 81


>gi|195059969|ref|XP_001995730.1| GH17604 [Drosophila grimshawi]
 gi|193896516|gb|EDV95382.1| GH17604 [Drosophila grimshawi]
          Length = 1889

 Score =  312 bits (800), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 242/812 (29%), Positives = 374/812 (46%), Gaps = 158/812 (19%)

Query: 252  EKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVME 306
            E++WE    +   I+D +    G   K A      + V+ VPP+  R P+    G +  +
Sbjct: 211  ERVWE----ILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVR-PAVVMFGAAKNQ 265

Query: 307  HPQTVLLSKVLQANIYL-------ANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
               T  L+ +++AN  L       A A+V Q +N K+       LQ  V  L D      
Sbjct: 266  DDLTHKLADIIKANNELRKNEGSGAAAHVIQ-ENIKM-------LQFHVATLVDNDMPGM 317

Query: 360  QRDMAS------GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         I   L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A
Sbjct: 318  PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIA 377

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTS 473
              LT+PE VTP+N+ ++++ +  G   +PGA + +                  G ++D  
Sbjct: 378  QNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVR---------------DNGERIDLR 422

Query: 474  RGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 532
                  P K SD   + G  V RHL+D D+V+ NRQPTLHK S+M H V+VL    T RM
Sbjct: 423  ----FHP-KSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWS-TFRM 476

Query: 533  HYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVS 592
            + +  S YNADFDGDEMN+H PQ   +RAE  NI     Q + P    P+  ++QD + +
Sbjct: 477  NLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTA 536

Query: 593  AALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKP 652
               +TK+D F+ R++   LL         L ++ GK  Q               P I KP
Sbjct: 537  VRKMTKRDVFITREQVMNLLMF-------LPTWDGKMPQ---------------PCILKP 574

Query: 653  EPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKT 712
             PLWTGKQ+ + +                  +P +                     + +T
Sbjct: 575  RPLWTGKQIFSLI------------------IPGNV-------------------NMIRT 597

Query: 713  NKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY 772
            +  H D                 E +    K     + K+++   DL+ G++ K      
Sbjct: 598  HSTHPD-----------------EEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTS 640

Query: 773  G--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHG 830
               L+H      G + AG     +  +   +L + G + G+ D +     + +  N +  
Sbjct: 641  AGSLLHICFLELGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTI----ADPQTYNEIQM 696

Query: 831  SEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN---KHT 887
            + +  K   +  ++     E++P              G+     F+ K+   LN     T
Sbjct: 697  AIKKAKDDVINVIQKAHNMELEPTP------------GNTLRQTFENKVNRILNDARDKT 744

Query: 888  SSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSG 947
              S    L        T  N +  M  SG+KGS +N  Q+ + +GQQ +EGKR+P     
Sbjct: 745  GGSAKKSL--------TEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRK 796

Query: 948  KTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL 1007
            +TLP F   D+ P + GF+ + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR L
Sbjct: 797  RTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRL 856

Query: 1008 IKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            IK +E + ++YD +VR++ G ++Q  YGEDG+
Sbjct: 857  IKAMESVMVNYDGTVRNSVGQLIQLRYGEDGL 888



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F  + A PGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ I 
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI- 1122

Query: 1191 SKDIKTPVITCPLLVG 1206
            SK  K P +T  L  G
Sbjct: 1123 SKKPKAPSLTVFLTGG 1138



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 27/50 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
           C+TC      CPGHFGHIDL  PV++         +L+ +CF+C     S
Sbjct: 67  CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS 116


>gi|301778185|ref|XP_002924473.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Ailuropoda melanoleuca]
          Length = 1970

 Score =  312 bits (800), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 237/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
            ++                       RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 482  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PA+
Sbjct: 542  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAV 579

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 580  LKPRPLWTGKQIFSLIVPGHI--------------------------------------N 601

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 602  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 643  KSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 703  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 747  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 860  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|111278801|gb|ABH09098.1| RNA polymerase II largest subunit [Pyrenula pseudobufonia]
          Length = 1007

 Score =  312 bits (800), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 215/679 (31%), Positives = 329/679 (48%), Gaps = 137/679 (20%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ K+G  RQ LMGKRV+++ R+VI+ DP L+++E+G+P   A  LTYPE VTP+NV KL
Sbjct: 261  LKGKDGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARNLTYPEVVTPFNVDKL 320

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
            +  + NG   HPGA   +    T         RI +     TS   +         +F G
Sbjct: 321  KRLVANGPTEHPGARFVVRDDGT---------RIDLRHHKRTSELTL---------QF-G 361

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RH+  GD++L NRQP+L         VRV+    T R++ +  + YNADFDGDEMN
Sbjct: 362  WKVERHISHGDIILFNRQPSLXXXXXXXXRVRVMP-YSTFRLNLSVTTPYNADFDGDEMN 420

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E +RAE  N+       V P    PL  ++QD +     + ++D FL+R++   
Sbjct: 421  LHVPQSEEARAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREQVMN 480

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
             +         +  + G              V+P  PA+ KP P WTGKQVI+ VL    
Sbjct: 481  TML-------WVPDWDG--------------VIPQ-PAVLKPRPRWTGKQVISMVL---- 514

Query: 671  RGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGK 730
                          P +    R + D                                  
Sbjct: 515  --------------PPNLNLVRIDKDS--------------------------------- 527

Query: 731  PGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAG 788
             GEE E      +   L++  L + + +L+ G+ +K        G++HTV   +G  TA 
Sbjct: 528  -GEEYE------RFSPLADGGLFVDRGELMFGLFNKKSVGTSAGGIIHTVFNEFGPETAM 580

Query: 789  TLLSALSRLFTVFLQMHGFTCGVDDLL-------ILKDKERERKNHLHGSEEIGKRVHLE 841
               +    +   +L  +GF+ G+ D +        +K++  +RK+ +   E I ++   +
Sbjct: 581  AFFNGAQTVVNYWLLHYGFSIGIGDTVPDNATVESIKEQVNQRKSEV---ESITQKAQNQ 637

Query: 842  ALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLL 901
             LE + G  +     +S++ KA+    D A                + S + +L      
Sbjct: 638  ELEAQPGMNVRET-FESKVAKALNDARDGAGG-------------ATESSLKDL------ 677

Query: 902  KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 961
                 N I  M  +G+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D++ +
Sbjct: 678  ----NNAIQ-MARAGSKGSTINIAQMTAIVGQQSVEGKRIPFGFKYRTLPHFAKDDYSAQ 732

Query: 962  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1021
            + GF+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE   + YD +
Sbjct: 733  SRGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEETTVRYDNT 792

Query: 1022 VRDADGSIVQFCYGEDGVD 1040
            VRDA G++VQF YGEDG+D
Sbjct: 793  VRDARGNVVQFIYGEDGLD 811


>gi|71027119|ref|XP_763203.1| DNA-directed RNA polymerase II largest subunit [Theileria parva
            strain Muguga]
 gi|68350156|gb|EAN30920.1| DNA-directed RNA polymerase II largest subunit, putative [Theileria
            parva]
          Length = 1681

 Score =  312 bits (800), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 241/787 (30%), Positives = 363/787 (46%), Gaps = 130/787 (16%)

Query: 265  ISDMQQQGF-GKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL 323
            + DM+  GF  +++      L V+ VPP   R   + G    E   T+ L  VL+ N  L
Sbjct: 218  LEDMKCLGFVPERSQPCWLILQVLPVPPPAVRPYVQYGSDRSEDDLTLKLLDVLKTN-NL 276

Query: 324  ANAYVNQPDNAKVIVARWMNLQQSVNVLFD----GKNAAGQRDM--ASGICQLLEKKEGL 377
               +  +     +I      LQ  +  LFD    G   A  R       I   L+ KEG 
Sbjct: 277  IKRHDKRATAPHIIQEMCQLLQFHITTLFDNDIPGMPIASTRSKKPIKSIRARLKGKEGR 336

Query: 378  FRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIING 437
             R  LMGKRV+++ R+VI+ DP + ++ IG+P   A+ LT+ E V   N   LR  +  G
Sbjct: 337  LRGNLMGKRVDFSARTVITGDPNIPIDTIGVPKSIAMTLTFCETVNSLNYESLRKKVETG 396

Query: 438  AEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRH 496
                PGA + +                    + D +R  +    K S+ + E G  V RH
Sbjct: 397  PHDWPGAKYII--------------------RDDGTRFDLRHVKKSSELQLEYGYKVERH 436

Query: 497  LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
            +QDGD +L NRQP+LHK SIM H  ++L    T R++ +  + YNADFDGDEMN+H  Q 
Sbjct: 437  MQDGDYILFNRQPSLHKMSIMGHRAKILP-YSTFRLNLSVTTPYNADFDGDEMNLHLVQT 495

Query: 557  EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
              +RAE  +++    Q V P    P+  ++QD +++ +  TK+DTFL RDE   LL    
Sbjct: 496  HETRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSLLAVSKFTKRDTFLTRDELMSLLI--- 552

Query: 617  VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
                 +  + GK  Q               PAI+ P+ LWTGKQVI+ +L          
Sbjct: 553  ----WIPYWDGKLPQ---------------PAIFFPKNLWTGKQVISVLLT--------- 584

Query: 677  VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
                            FN   QS    N       T K+ KD                  
Sbjct: 585  ----------------FN---QSQGITNINLIRDGTIKLDKD------------------ 607

Query: 737  AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSAL 794
                 +    +++ +++I KN+ + G+I K     +   L+H +    G       L+ L
Sbjct: 608  -----NLNCSINDSRVIIRKNEHISGIICKKTVGCSSGSLIHILWHEAGPEKCRDFLTTL 662

Query: 795  SRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
             ++   +    GFT    D+   +    +    L  S+   K V    L+ + G      
Sbjct: 663  QKVVNNWFLQIGFTVSCSDICCSESTLNKVSRILDKSK---KEVQKLVLQAQKG------ 713

Query: 855  KLKSEIEKAMRGGGDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLM 912
            KLK +        G +    F+ ++  +LN  +  S S++   L+         N I  M
Sbjct: 714  KLKCQ-------PGKSLFESFEARVNKELNDAREQSGSIVASSLNLS-------NNILSM 759

Query: 913  TTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLT 972
              SG+KGS +N  QI + +GQQ +EGKR+P     ++LP F   D+ P + GF+ + +L+
Sbjct: 760  VNSGSKGSTINISQIIACVGQQNVEGKRIPFGFRDRSLPHFIKHDYGPESRGFVSNSYLS 819

Query: 973  GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQF 1032
            GL PQE +FH M GREG++DTA KTS +GY+QR LIK +E + + YD + R+ +G I+QF
Sbjct: 820  GLTPQEMFFHAMGGREGIIDTACKTSETGYVQRRLIKAMEDVMVQYDRTARNGNGEILQF 879

Query: 1033 CYGEDGV 1039
             YGEDG+
Sbjct: 880  LYGEDGM 886



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 54/70 (77%), Gaps = 1/70 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            V+  F  ++A PGE VG +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+E++ + 
Sbjct: 1064 VERCFFKAIANPGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVV 1123

Query: 1191 SKDIKTPVIT 1200
            + +++TP +T
Sbjct: 1124 T-NVRTPSLT 1132



 Score = 45.1 bits (105), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC      CPGHFGHI L  P+Y+      +  +L+ +CF C     S+  + K   +
Sbjct: 70  CLTCSMDLKYCPGHFGHIVLAKPMYHYGFMMTVLKILRCVCFNC-----SKLLLNKNDPR 124

Query: 61  LELIIKG 67
           ++LI+K 
Sbjct: 125 VQLILKS 131


>gi|358057836|dbj|GAA96338.1| hypothetical protein E5Q_03004 [Mixia osmundae IAM 14324]
          Length = 2471

 Score =  312 bits (799), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 215/679 (31%), Positives = 325/679 (47%), Gaps = 142/679 (20%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VI+ DP L ++E+G+P   A  LTYPERVTP+N+  L
Sbjct: 365  LKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPESIAKNLTYPERVTPYNITAL 424

Query: 431  RDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN 486
            +  +  G +  PGA + +    D++    LP         G  +D + G IV+       
Sbjct: 425  QALVAKGPDELPGARYVVKDSGDRIDLRYLPS--------GTSIDLAYGWIVE------- 469

Query: 487  EFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDG 546
                    RHL++GD VL NRQP+LHK S+MAH V++L    T R++ +    YNADFDG
Sbjct: 470  --------RHLRNGDYVLFNRQPSLHKMSMMAHRVKLLP-YSTFRLNLSVTPPYNADFDG 520

Query: 547  DEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRD 606
            DEMN+H PQ E +RAE   I     Q V P    P+  ++QD +      T +D F++RD
Sbjct: 521  DEMNMHVPQSEETRAELQQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDCFMDRD 580

Query: 607  EFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL 666
                                    Q +++   E + L   PAI KP+P+WTGKQ+++   
Sbjct: 581  FV----------------------QNIMLWVPEWDGLLPPPAIVKPKPMWTGKQILSMC- 617

Query: 667  NHITRGRPPFV-VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKE 725
              I RG   F+  E    LP D                 D G L    +++     KK  
Sbjct: 618  --IPRGVNLFIDNEAHSSLPDD-----------------DSGVLVDDGEIYYGVINKKTV 658

Query: 726  VVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSN 785
                  G ++E+                                    LV  +    G  
Sbjct: 659  ------GAQRES------------------------------------LVDLIFREKGPE 676

Query: 786  TAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGS-EEIG---KRVHLE 841
                  + + ++   +L  +GF+ G+ D +  +D  R   +++  + +E+     +   +
Sbjct: 677  ICRLFFTGVQKVVNFWLLHNGFSIGIGDTVADRDTMRTITDYIQTAKDEVAVFISKAQQD 736

Query: 842  ALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLL 901
             +E E G  I                       F+ K+T  LN+   ++   +     L 
Sbjct: 737  LIEPEPGMTIR--------------------ETFESKVTGSLNRARDTA--GQSAERSL- 773

Query: 902  KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 961
                 N +  M  +G+KGS +N  Q+S+ +GQQ +EGKR+P     ++LP F   D  P 
Sbjct: 774  --AASNNVKQMVVAGSKGSFINISQMSACVGQQIVEGKRIPFGFRYRSLPHFTKDDHTPE 831

Query: 962  AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1021
            A GF+ + +L GL PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + ++YD +
Sbjct: 832  ARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVNYDGT 891

Query: 1022 VRDADGSIVQFCYGEDGVD 1040
            VR++ G IVQF YGEDG+D
Sbjct: 892  VRNSLGDIVQFVYGEDGMD 910



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 55/76 (72%), Gaps = 1/76 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F  S+  PGE  G LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ IA
Sbjct: 1085 IEARFNASVVHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIA 1144

Query: 1191 SKDIKTPVITCPLLVG 1206
              +IKTP +T  L  G
Sbjct: 1145 -DNIKTPSLTVYLQPG 1159



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREV 54
           C+TCG+    CPGHFGHI+L  PVY+      +  +L+ +C  C   K+   E+
Sbjct: 76  CQTCGEGMAECPGHFGHIELGRPVYHVGFMTKVKKILECVCVQCGTLKSDLSEL 129


>gi|194889556|ref|XP_001977109.1| RNA polymerase II 215kD subunit [Drosophila erecta]
 gi|190648758|gb|EDV46036.1| RNA polymerase II 215kD subunit [Drosophila erecta]
          Length = 1889

 Score =  312 bits (799), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 239/805 (29%), Positives = 369/805 (45%), Gaps = 144/805 (17%)

Query: 252  EKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVME 306
            E++WE    +   I+D +    G   K A      + V+ VPP+  R P+    G +  +
Sbjct: 211  ERVWE----ILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVR-PAVVMFGAAKNQ 265

Query: 307  HPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS- 365
               T  LS +++AN  L     +    A VI      LQ  V  L D       R M   
Sbjct: 266  DDLTHKLSDIIKANNELRKNEASG-AAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324

Query: 366  -----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE 420
                  I   L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  LT+PE
Sbjct: 325  GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384

Query: 421  RVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP 480
             VTP+N+ ++++ +  G   +PGA + +                  G ++D        P
Sbjct: 385  LVTPFNIDRMQELVRRGNSQYPGAKYIVR---------------DNGERIDLR----FHP 425

Query: 481  GKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 539
             K SD   + G  V RHL+D D+V+ NRQPTLHK S+M H V+VL    T RM+ +  S 
Sbjct: 426  -KSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWS-TFRMNLSCTSP 483

Query: 540  YNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
            YNADFDGDEMN+H PQ   +RAE  NI     Q + P    P+  ++QD + +   +TK+
Sbjct: 484  YNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKR 543

Query: 600  DTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
            D F+ R++   LL         L ++ GK  Q               P I KP PLWTGK
Sbjct: 544  DVFITREQVMNLLMF-------LPTWDGKMPQ---------------PCILKPRPLWTGK 581

Query: 660  QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
            Q+ + +                  +P +                     + +T+  H D 
Sbjct: 582  QIFSLI------------------IPGNV-------------------NMIRTHSTHPD- 603

Query: 720  SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHT 777
                            E +    K     + K+++   +L+ G++ K         L+H 
Sbjct: 604  ----------------EEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHI 647

Query: 778  VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKR 837
                 G + AG     +  +   +L + G + G+ D +     + +  N +  + +  K 
Sbjct: 648  CFLELGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTI----ADPQTYNEIQQAIKKAKD 703

Query: 838  VHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN---KHTSSSVINE 894
              +  ++     E++P              G+     F+ K+   LN     T  S    
Sbjct: 704  DVINVIQKAHNMELEPTP------------GNTLRQTFENKVNRILNDARDKTGGSAKKS 751

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
            L        T  N +  M  SG+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F 
Sbjct: 752  L--------TEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFI 803

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
              D+ P + GF+ + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR LIK +E +
Sbjct: 804  KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 863

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGV 1039
             ++YD +VR++ G ++Q  YGEDG+
Sbjct: 864  MVNYDGTVRNSVGQLIQLRYGEDGL 888



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F  + A PGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ I 
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI- 1122

Query: 1191 SKDIKTPVITCPLLVG 1206
            SK  K P +T  L  G
Sbjct: 1123 SKKPKAPSLTVFLTGG 1138



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 13/115 (11%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC-------HHFK----- 48
           C+TC      CPGHFGHIDL  PV++         +L+ +CF+C       H+ K     
Sbjct: 67  CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 49  -ASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTP 102
             S+ +  K +  +  + KG  I     D+D+   +  P+ +       C    P
Sbjct: 127 MKSKGQPRKRLAYVYDLCKGKTICEGGEDMDITKGNQQPDPNKKPGHGGCGHYQP 181


>gi|405965007|gb|EKC30438.1| DNA-directed RNA polymerase II subunit RPB1 [Crassostrea gigas]
          Length = 3055

 Score =  312 bits (799), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 239/818 (29%), Positives = 369/818 (45%), Gaps = 168/818 (20%)

Query: 260  ELCSFISDMQQQGFGKKAGHS---IFFLGVVLVPPIKFRLPS--KGGDSVMEHPQTVLLS 314
            E+   ISD + Q  G    +S      + V+ VPP+  R P+    G +  +   T  L+
Sbjct: 216  EIFKRISDDECQVLGMDHRYSRPDWMIVTVMPVPPLAVR-PAVVMFGSARNQDDLTHKLA 274

Query: 315  KVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG--------QRDMASG 366
             +++AN  L     N    A  I++  M + Q     F      G         R + S 
Sbjct: 275  DIIKANNQLRRNEQN--GAASHIISEDMKMLQYHVATFTDNELPGLPKAVQKSGRPLKS- 331

Query: 367  ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
            + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  +T+PE VTP+N
Sbjct: 332  VKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPELVTPFN 391

Query: 427  VVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGK 482
            + ++++ +  GA  +PGA + +    +++     P    + + IG K             
Sbjct: 392  IDRMQELVRRGANQYPGAKYIIRDNGERIDLRFHPKASDLHLQIGYK------------- 438

Query: 483  DSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNA 542
                      V RH+QD D ++ NRQPTLHK S+M H V+VL    T R++ +  + YNA
Sbjct: 439  ----------VERHMQDNDYIVFNRQPTLHKMSMMCHKVKVLPW-STFRLNLSVTTPYNA 487

Query: 543  DFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTF 602
            DFDGDEMN+H PQ   ++AE  N+       + P    P+  ++QD + +   +TK+D F
Sbjct: 488  DFDGDEMNLHLPQSLETKAEISNLALVPRMIITPQANRPVMGIVQDTLTAVRKMTKRDVF 547

Query: 603  LNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI 662
            L+R +   LL         L  + G   Q               PAI KP+PLWTGKQ+ 
Sbjct: 548  LDRGQVMNLLMF-------LPRWDGHVPQ---------------PAILKPKPLWTGKQLF 585

Query: 663  TAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGK 722
            + V+     GR   +                                 +T+  H D    
Sbjct: 586  SLVIP----GRTNCI---------------------------------RTHSTHPD---- 604

Query: 723  KKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQE 780
                         E +K   K     + K+LI    L+ G++ K     +   L H V  
Sbjct: 605  -------------EEDKGPYKWISPGDTKVLIEDGMLISGILCKKTLGTSSGSLAHVVFM 651

Query: 781  LYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGK 836
             YG   AG +   +  L   +L + G + G+ D +       D +   K   H   E+ +
Sbjct: 652  EYGWVIAGEMYGHIQTLVNNWLLLEGHSIGIGDTIADPQTYIDIQDTIKKAKHDVIEVIE 711

Query: 837  RVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELL 896
            + H + LE   G  +                                 + T  +++N +L
Sbjct: 712  KAHNDDLEPTPGNTL---------------------------------RQTFENMVNRIL 738

Query: 897  SEGLLKPTGKNWISL--------MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGK 948
            ++   K   K   SL        M  +G+KGSK+N  Q+ + +GQQ +EGKR+P     +
Sbjct: 739  NDARDKTGSKAQKSLSDYNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHR 798

Query: 949  TLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1008
            TLP F   D+ P + GF+ + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR LI
Sbjct: 799  TLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLI 858

Query: 1009 KNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            K +E + + YD +VR+    +VQ  YGEDG+D     F
Sbjct: 859  KAMESVMVKYDGTVRNQVEQLVQLRYGEDGLDATHVEF 896



 Score = 87.4 bits (215), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            A++  ++F  +  A +  +  V+ +F  + A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1044 AKRVTEEFRLSSEAFEWLIGEVESRFQQAQAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1103

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+EI+ I SK  KTP +T  L+
Sbjct: 1104 GVSAKNVTLGVPRLKEIINI-SKKPKTPSLTVYLI 1137



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 67  CQTCAGNISECPGHFGHIELAKPVFHIGFLVKTIKILRCVCFFC 110


>gi|397135808|gb|AFO11399.1| RNA polymerase I, partial [Ogataea methanolica]
          Length = 870

 Score =  312 bits (799), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 217/684 (31%), Positives = 335/684 (48%), Gaps = 146/684 (21%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VIS DP L ++++G+P   A  L+YPE VTP+N+ KL
Sbjct: 142  LKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIARTLSYPEIVTPYNIQKL 201

Query: 431  RDSIINGAEIHPGATHYL-DKLSTMRLPPNKK---MRISIGRKLDTSRGAIVQPGKDSDN 486
             + + NG   HPGA + + D    + L  NK+   +++  G K++               
Sbjct: 202  TEYVRNGPNEHPGAKYVIRDSGDRIDLRFNKRAGDIQLQYGWKVE--------------- 246

Query: 487  EFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDG 546
                    RHL D D VL NRQP+LHK S+MAH V+V+    T RM+ +  S YNADFDG
Sbjct: 247  --------RHLMDDDPVLFNRQPSLHKMSMMAHRVKVMP-YSTFRMNLSVTSPYNADFDG 297

Query: 547  DEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRD 606
            DEMN+H PQ   +RAE   I     Q V P +  P+  ++QD +     +T +DTF+  D
Sbjct: 298  DEMNLHVPQSYETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFVEYD 357

Query: 607  EFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL 666
            +   + +        +  + G              V+P  PAI KP+PLWTGKQ+++   
Sbjct: 358  QVMNMCF-------WIPQWDG--------------VVP-QPAILKPKPLWTGKQMMSLC- 394

Query: 667  NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEV 726
                             +P+  F  R +    S +   D G L                +
Sbjct: 395  -----------------IPKGIFLQRLDGSLLSPK---DSGML----------------I 418

Query: 727  VEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGS 784
            V+G                            +++ GV++KA       GL+HTV    G 
Sbjct: 419  VDG----------------------------EIMFGVVNKATVGATAGGLIHTVMREKGP 450

Query: 785  NTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEA-- 842
                 +   + ++   +L  +GF+ G+ D +   +  +     +  ++E  + V L+A  
Sbjct: 451  QVCAQMFGNIQKVVNYWLLHNGFSIGIGDAIADTETMKTITETIGVAKEKVQEVILDAQN 510

Query: 843  --LELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGL 900
              LE E G  +                       F+ K++  LN+   ++  +   +E  
Sbjct: 511  NILEPEPGMTVR--------------------ESFEQKVSKILNEARDTAGKS---AESS 547

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
            LK    N +  M T+G+KGS +N  Q+S+ +GQQ +EGKR+    S ++LP F   D++ 
Sbjct: 548  LKEA--NNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFSDRSLPHFTKDDYSA 605

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
             + GF+ + +L GL PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD 
Sbjct: 606  ESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDIMVHYDG 665

Query: 1021 SVRDADGSIVQFCYGEDGVDVHQT 1044
            + R++ G I+QF YGEDG+D  Q 
Sbjct: 666  TTRNSLGDIIQFIYGEDGIDGTQV 689


>gi|407410320|gb|EKF32797.1| DNA-directed RNA polymerase III largest subunit, putative
            [Trypanosoma cruzi marinkellei]
          Length = 1629

 Score =  312 bits (799), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 235/778 (30%), Positives = 356/778 (45%), Gaps = 144/778 (18%)

Query: 282  FFLGVVLVPPIKFR-LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
              +  +LVPP+  R   S G  ++ +   T   + +L ++  L +  ++    A      
Sbjct: 333  LLVTTLLVPPVSVRPRGSSGTANIRDDDLTGQYNDILISSDTLQDGSID----ASKYTET 388

Query: 341  WMNLQQSVNVLFDGKNAAGQRDMASG----ICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            W  LQ     L D         M +       Q L+ K G FR  L GKRV+++ RSVIS
Sbjct: 389  WEMLQMRAARLLDSALPGFPPHMRTADVKSYAQRLKGKHGRFRGNLSGKRVDFSGRSVIS 448

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATH-YLDKLSTMR 455
            PDP L V+E+ +P   A  LTYP+RV   N+  +R  + NG  +HPGA   YL +  + +
Sbjct: 449  PDPNLDVDELAVPLRVARVLTYPQRVFKSNLELMRRLVRNGPNVHPGAVAVYLAQEGSKK 508

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
               +++ R S+  +L                   G +V RH+ +GDVVL NRQP+LH+ S
Sbjct: 509  SLNHERDRESLSARLSV-----------------GDVVERHVMNGDVVLFNRQPSLHRIS 551

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            +MAH  RVL   +T R +   C+ YNADFDGDEMNVH  Q E +RAEA+ +++     + 
Sbjct: 552  MMAHRARVLPF-RTFRFNECCCAPYNADFDGDEMNVHLVQTEEARAEAFELMSTAKNIIN 610

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 635
              NG+P+ +  QD +V+A L+T +D F +R +       S + S  LG  T         
Sbjct: 611  AKNGEPIIACTQDFLVAAYLVTSRDVFFDRSQM------SWMVSHWLGPVT--------- 655

Query: 636  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
                Q  LP+ P I KP  LWTGKQ    V   I R  P   V    +    F+      
Sbjct: 656  ----QFRLPI-PTILKPTELWTGKQ----VFELILRPSPEVNVLLNLEAATKFYT----- 701

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
                                   K G+     EG                      +   
Sbjct: 702  -----------------------KKGRHDCAAEGY---------------------VAFL 717

Query: 756  KNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
             +  + G +DK      A  GL   +  L G      ++S +++  + +L  +GF+ G+ 
Sbjct: 718  DSHFISGRLDKKLLGGGAKDGLFARLHTLAGGGYTARIMSRIAQFTSRYLTNYGFSLGLG 777

Query: 813  DLL---ILKDKERE-------RKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEK 862
            D+    +L +++           + L  S + G+   L  L +    E    +L +E+ K
Sbjct: 778  DVAPTPLLNEQKAAVLARSFATCDGLIESAKTGRMEPLPGLTVRQSLEA---RLNAELSK 834

Query: 863  AMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV 922
                 G AAV    +   + L                           +M  SG+KGS +
Sbjct: 835  VRDECGTAAVEALSVDTNTPL---------------------------MMVQSGSKGSAL 867

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  Q+ + +GQQ + GKR+      ++LP F+ ++ AP A GF+ + F +GL P E++FH
Sbjct: 868  NIAQMMACVGQQTVSGKRILNAFQDRSLPHFYRFEEAPSARGFVANSFYSGLTPTEFFFH 927

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             MAGREGLVDTAVKT+ +GY+ R L+K +E L + YD + R+  G +VQF +GEDG+D
Sbjct: 928  TMAGREGLVDTAVKTAETGYIYRRLMKAMENLSVRYDGTARNTRGDVVQFRFGEDGLD 985



 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 55/77 (71%), Gaps = 1/77 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            FL     K++L   +PG P G +A+QSVGEPSTQMTL TFH AG   M++T G+PRL EI
Sbjct: 1208 FLAQCASKYILKACEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQGVPRLVEI 1267

Query: 1187 LTIASKDIKTPVITCPL 1203
            +  A+++I TPV+T P+
Sbjct: 1268 IN-ANRNIATPVVTAPV 1283



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 32/61 (52%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG R   C GH GHIDL  PV++   F+ +  + + IC  C H      E+E   R+
Sbjct: 149 CATCGLRSIDCVGHPGHIDLETPVFHLGFFSTILRICRTICKRCSHLLLDDAEIEYYKRR 208

Query: 61  L 61
           L
Sbjct: 209 L 209


>gi|341894670|gb|EGT50605.1| hypothetical protein CAEBREN_32550 [Caenorhabditis brenneri]
          Length = 1713

 Score =  311 bits (798), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 236/770 (30%), Positives = 364/770 (47%), Gaps = 139/770 (18%)

Query: 286  VVLVPPIKFRLPS--KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMN 343
            V+ VPP+  R P+    G +  +   T  LS +++ N  L     N    A V+      
Sbjct: 246  VLPVPPLAVR-PAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGA-AAHVLTDDVRL 303

Query: 344  LQQSVNVLFDG-------KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            LQ  V  L D            G R + S I Q L+ KEG  R  LMGKRV+++ R+VI+
Sbjct: 304  LQYHVATLVDNCIPGLPTATQKGGRPLKS-IKQRLKGKEGRIRGNLMGKRVDFSARTVIT 362

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
             DP L ++ +G+P   A  LT+PE VTP+NV KL++ +  G   +PGA + + +      
Sbjct: 363  ADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYIIRE------ 416

Query: 457  PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
                  R+ + R    +    +QP         G  V RH++DGD+++ NRQPTLHK S+
Sbjct: 417  ---NGARVDL-RYHPRAADLHLQP---------GYRVERHMKDGDIIVFNRQPTLHKMSM 463

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            M H V++L    T RM+ +  S YNADFDGDEMN+H PQ   +RAE   I     Q + P
Sbjct: 464  MGHRVKILPW-STFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITP 522

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
                P+  ++QD + +  ++TK+D F++      LL         L ++ GK  Q     
Sbjct: 523  QANKPVMGIVQDTLCAVRMMTKRDIFIDWSFMMDLLMY-------LPTWDGKVPQ----- 570

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
                      PAI KP+PLWTGKQV + +                  +P +         
Sbjct: 571  ----------PAILKPKPLWTGKQVFSLI------------------IPGNV-------- 594

Query: 697  KQSDRKKNDKGKLSKTNKMHKDK--SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLI 754
                        + +T+  H D   +G  K +    PG+ K                +LI
Sbjct: 595  -----------NVLRTHSTHPDSEDAGPYKWI---SPGDTK----------------VLI 624

Query: 755  YKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
               +L+ G++           L+H V    G   A    S +  +   +L   G T G+ 
Sbjct: 625  EHGELLTGIVCSKTVGKSAGNLLHVVALELGHEIAANFYSHIQTVINAWLLREGHTIGIG 684

Query: 813  DLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
            D +  ++  R+ ++ +  +    K+  ++ +E     +++P              G+   
Sbjct: 685  DTIADQETYRDIQDTIRKA----KQDVVDIIEKAHNDDLEPTP------------GNTLR 728

Query: 873  AYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
              F+ K+   LN  +  + S   + LSE        N    M  SG+KGSK+N  Q+ + 
Sbjct: 729  QTFENKVNQILNDARDRTGSSAQKSLSEF-------NNFKSMVVSGSKGSKINISQVIAC 781

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            +GQQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL
Sbjct: 782  VGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGL 841

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            +DTAVKT+ +GY+QR LIK +E + ++YD +VR++   +VQ  YGEDG+D
Sbjct: 842  IDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLD 891



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/74 (58%), Positives = 57/74 (77%), Gaps = 1/74 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
             L  ++ +F  ++AQPGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI
Sbjct: 1081 LLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEI 1140

Query: 1187 LTIASKDIKTPVIT 1200
            + + SK +KTP +T
Sbjct: 1141 INV-SKQLKTPSLT 1153



 Score = 47.4 bits (111), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC      CPGHFGH++L  PV++         +L+ +CF+C
Sbjct: 66  CMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKSLKILRCVCFYC 109


>gi|444722932|gb|ELW63604.1| DNA-directed RNA polymerase II subunit RPB1 [Tupaia chinensis]
          Length = 1801

 Score =  311 bits (798), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 247/842 (29%), Positives = 383/842 (45%), Gaps = 150/842 (17%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL------------DKLSTMRLPPNKK 461
              +T+ E VTP+N+ +L++ +  G   +PGA + +             K S + L    K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 462  MRISIGRKLDTSR-----GAIVQP-GKDSD----NEFEGKMVYRHLQDGDVVLVNRQPTL 511
             R   G +L         G + +P  KD D     +     V RH+ DGD+V+ NRQPTL
Sbjct: 446  ARNRPGSQLREQEAGKRVGTLSRPVHKDPDLLAVLKTAALWVERHMCDGDIVIFNRQPTL 505

Query: 512  HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
            HK S+M H VR+L    T R++ +  + YNADFDGDEMN+H PQ   +RAE   +     
Sbjct: 506  HKMSMMGHRVRILPW-STFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPR 564

Query: 572  QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
              V P +  P+  ++QD + +    TK+D FL R E   LL         L ++ GK  Q
Sbjct: 565  MIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ 617

Query: 632  RVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFK 690
                           PAI KP PLWTGKQ+ + ++  HI                     
Sbjct: 618  ---------------PAILKPRPLWTGKQIFSLIIPGHI--------------------- 641

Query: 691  TRFNADKQSDRKKNDKGKLSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELS 748
                                +T+  H D   SG  K +  G                   
Sbjct: 642  -----------------NCIRTHSTHPDDEDSGPYKHISPG------------------- 665

Query: 749  EEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHG 806
            + K+++   +L+ G++ K         LVH      G +      S +  +   +L + G
Sbjct: 666  DTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEG 725

Query: 807  FTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRG 866
             T G+ D +      ++ +N +  +    K+  +E +E     E++P             
Sbjct: 726  HTIGIGDSIADSKTYQDIQNTIKKA----KQDVIEVIEKAHNNELEPTP----------- 770

Query: 867  GGDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNF 924
             G+     F+ ++   LN  +  + S   + LSE        N    M  SGAKGSK+N 
Sbjct: 771  -GNTLRQTFENQVNRILNDARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINI 822

Query: 925  QQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCM 984
             Q+ + +GQQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL P E++FH M
Sbjct: 823  SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM 882

Query: 985  AGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT 1044
             GREGL+DTAVKT+ +GY+QR LIK++E + + YD +VR++   +VQ  YGEDG+     
Sbjct: 883  GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV 942

Query: 1045 SF 1046
             F
Sbjct: 943  EF 944



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1092 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1151

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1152 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1185



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|324120570|dbj|BAJ78676.1| RNA polymerase II largest subunit [Neocolochelyna itoi]
          Length = 1815

 Score =  311 bits (798), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 237/802 (29%), Positives = 368/802 (45%), Gaps = 142/802 (17%)

Query: 256  ENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVMEHPQT 310
            E  +E+   I+D +    G   K A      + V+ VPP+  R P+    G +  +   T
Sbjct: 212  ERAWEILKHITDEESFILGMDPKFARPDWMIVTVLPVPPLSVR-PAVVMYGSAKNQDDLT 270

Query: 311  VLLSKVLQANI-YLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS---- 365
              L+ ++++N   L N        A VI      LQ  V  L D       R M      
Sbjct: 271  HKLADIIKSNNELLRNEQAGAA--AHVISENIKMLQFHVATLVDNDMPGMPRAMQKSGKP 328

Query: 366  --GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVT 423
               I   L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  LT+PE VT
Sbjct: 329  LKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVT 388

Query: 424  PWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKD 483
            P+N+ K+++ +  G   +PGA + +                  G ++D        P K 
Sbjct: 389  PFNIDKMQELVRRGNSQYPGAKYIVR---------------DNGERIDLR----FHP-KP 428

Query: 484  SDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNA 542
            SD   + G  V RH++DGD+V+ NRQPTLHK S+M H V+VL    T RM+ +  S YNA
Sbjct: 429  SDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPW-STFRMNLSCTSPYNA 487

Query: 543  DFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTF 602
            DFDGDEMN+H PQ   +RAE  NI     Q + P    P+  ++QD + +   +TK+D F
Sbjct: 488  DFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVF 547

Query: 603  LNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI 662
            + +++   +L         L S+ GK  Q               P I KP+PLWTGKQ+ 
Sbjct: 548  IEKEQMMNILMH-------LPSWDGKMPQ---------------PCILKPKPLWTGKQIF 585

Query: 663  TAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGK 722
            + +                  +P +                     + +T+  H D    
Sbjct: 586  SLI------------------IPGNV-------------------NMIRTHSTHPD---- 604

Query: 723  KKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQE 780
                         E +  + K     + K+++   +LV G++ K         L+H    
Sbjct: 605  -------------EEDDGQYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICML 651

Query: 781  LYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHL 840
              G +  G     +  +   +L + G + G+ D +       E +  +  ++E      +
Sbjct: 652  ELGHDVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKED----VI 707

Query: 841  EALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN---KHTSSSVINELLS 897
            E ++     E++P              G+     F+ ++   LN     T  S    L  
Sbjct: 708  EVIQKAHNMELEPTP------------GNTLRQTFENQVNRILNDARDKTGGSAKKSL-- 753

Query: 898  EGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWD 957
                  T  N +  M  SG+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F   D
Sbjct: 754  ------TEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDD 807

Query: 958  WAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIS 1017
            + P + GF+ + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR LIK +E + + 
Sbjct: 808  YGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVH 867

Query: 1018 YDYSVRDADGSIVQFCYGEDGV 1039
            YD +VR++ G ++Q  YGEDG+
Sbjct: 868  YDGTVRNSVGQLIQLRYGEDGL 889



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 51/70 (72%), Gaps = 1/70 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F  +   PGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ I 
Sbjct: 1065 IETRFQQAQVFPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI- 1123

Query: 1191 SKDIKTPVIT 1200
            SK  K P +T
Sbjct: 1124 SKKPKAPSLT 1133



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 27/50 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
           C+TC      CPGHFGHIDL  PV++         +L+ +CF+C     S
Sbjct: 66  CQTCAGNMTECPGHFGHIDLAKPVFHVGFITKSIKILRCVCFYCSKLLVS 115


>gi|195133818|ref|XP_002011336.1| GI16472 [Drosophila mojavensis]
 gi|193907311|gb|EDW06178.1| GI16472 [Drosophila mojavensis]
          Length = 1889

 Score =  311 bits (798), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 239/805 (29%), Positives = 369/805 (45%), Gaps = 144/805 (17%)

Query: 252  EKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVME 306
            E++WE    +   I+D +    G   K A      + V+ VPP+  R P+    G +  +
Sbjct: 211  ERVWE----ILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVR-PAVVMFGAAKNQ 265

Query: 307  HPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS- 365
               T  L+ +++AN  L     +    A VI      LQ  V  L D       R M   
Sbjct: 266  DDLTHKLADIIKANNELRKNEASG-AAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324

Query: 366  -----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE 420
                  I   L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  LT+PE
Sbjct: 325  GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384

Query: 421  RVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP 480
             VTP+N+ ++++ +  G   +PGA + +                  G ++D        P
Sbjct: 385  LVTPFNIDRMQELVRRGNSQYPGAKYIVR---------------DNGERIDLR----FHP 425

Query: 481  GKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 539
             K SD   + G  V RHL+D D+V+ NRQPTLHK S+M H V+VL    T RM+ +  S 
Sbjct: 426  -KSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWS-TFRMNLSCTSP 483

Query: 540  YNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
            YNADFDGDEMN+H PQ   +RAE  NI     Q + P    P+  ++QD + +   +TK+
Sbjct: 484  YNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKR 543

Query: 600  DTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
            D F+ R++   LL         L ++ GK  Q               P I KP PLWTGK
Sbjct: 544  DVFITREQVMNLLMF-------LPTWDGKMPQ---------------PCILKPRPLWTGK 581

Query: 660  QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
            Q+ + +                  +P +                     + +T+  H D 
Sbjct: 582  QIFSLI------------------IPGNV-------------------NMIRTHSTHPD- 603

Query: 720  SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHT 777
                            E +    K     + K+++   DL+ G++ K         L+H 
Sbjct: 604  ----------------EEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHI 647

Query: 778  VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKR 837
                 G + AG     +  +   +L + G + G+ D +     + +  N +  + +  K 
Sbjct: 648  CFLELGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTI----ADPQTYNEIQMAIKKAKD 703

Query: 838  VHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN---KHTSSSVINE 894
              +  ++     E++P              G+     F+ K+   LN     T  S    
Sbjct: 704  DVINVIQKAHNMELEPTP------------GNTLRQTFENKVNRILNDARDKTGGSAKKS 751

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
            L        T  N +  M  SG+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F 
Sbjct: 752  L--------TEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFI 803

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
              D+ P + GF+ + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR LIK +E +
Sbjct: 804  KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 863

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGV 1039
             ++YD +VR++ G ++Q  YGEDG+
Sbjct: 864  MVNYDGTVRNSVGQLIQLRYGEDGL 888



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F  + A PGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ I 
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI- 1122

Query: 1191 SKDIKTPVITCPLLVG 1206
            SK  K P +T  L  G
Sbjct: 1123 SKKPKAPSLTVFLTGG 1138



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 27/50 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
           C+TC      CPGHFGHIDL  PV++         +L+ +CF+C     S
Sbjct: 67  CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS 116


>gi|194762514|ref|XP_001963379.1| GF20366 [Drosophila ananassae]
 gi|190629038|gb|EDV44455.1| GF20366 [Drosophila ananassae]
          Length = 1889

 Score =  311 bits (798), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 239/805 (29%), Positives = 369/805 (45%), Gaps = 144/805 (17%)

Query: 252  EKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVME 306
            E++WE    +   I+D +    G   K A      + V+ VPP+  R P+    G +  +
Sbjct: 211  ERVWE----ILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVR-PAVVMFGAAKNQ 265

Query: 307  HPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS- 365
               T  LS +++AN  L     +    A VI      LQ  V  L D       R M   
Sbjct: 266  DDLTHKLSDIIKANNELRKNEASG-AAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324

Query: 366  -----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE 420
                  I   L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  LT+PE
Sbjct: 325  GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384

Query: 421  RVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP 480
             VTP+N+ ++++ +  G   +PGA + +                  G ++D        P
Sbjct: 385  LVTPFNIDRMQELVRRGNSQYPGAKYIVR---------------DNGERIDLR----FHP 425

Query: 481  GKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 539
             K SD   + G  V RHL+D D+V+ NRQPTLHK S+M H V+VL    T RM+ +  S 
Sbjct: 426  -KSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWS-TFRMNLSCTSP 483

Query: 540  YNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
            YNADFDGDEMN+H PQ   +RAE  NI     Q + P    P+  ++QD + +   +TK+
Sbjct: 484  YNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKR 543

Query: 600  DTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
            D F+ R++   LL         L ++ GK  Q               P I KP PLWTGK
Sbjct: 544  DVFITREQMMNLLMF-------LPTWDGKMPQ---------------PCILKPRPLWTGK 581

Query: 660  QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
            Q+ + +                  +P +                     + +T+  H D 
Sbjct: 582  QIFSLI------------------IPGNV-------------------NMIRTHSTHPD- 603

Query: 720  SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHT 777
                            E +    K     + K+++   +L+ G++ K         L+H 
Sbjct: 604  ----------------EEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHI 647

Query: 778  VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKR 837
                 G + AG     +  +   +L + G + G+ D +     + +  N +  + +  K 
Sbjct: 648  CFLELGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTI----ADPQTYNEIQCAIKKAKD 703

Query: 838  VHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN---KHTSSSVINE 894
              +  ++     E++P              G+     F+ K+   LN     T  S    
Sbjct: 704  DVINVIQKAHNMELEPTP------------GNTLRQTFENKVNRILNDARDKTGGSAKKS 751

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
            L        T  N +  M  SG+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F 
Sbjct: 752  L--------TEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFI 803

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
              D+ P + GF+ + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR LIK +E +
Sbjct: 804  KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 863

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGV 1039
             ++YD +VR++ G ++Q  YGEDG+
Sbjct: 864  MVNYDGTVRNSVGQLIQLRYGEDGL 888



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F  + A PGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ I 
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI- 1122

Query: 1191 SKDIKTPVITCPLLVG 1206
            SK  K P +T  L  G
Sbjct: 1123 SKKPKAPSLTVFLTGG 1138



 Score = 57.4 bits (137), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 13/115 (11%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC-------HHFK----- 48
           C+TC      CPGHFGHIDL  PV++         +L+ +CF+C       H+ K     
Sbjct: 67  CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 49  -ASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTP 102
             S+ +  K +  +  + KG  I     D+DL  E+  P+ +       C    P
Sbjct: 127 MKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQP 181


>gi|119112579|ref|XP_317690.3| AGAP007810-PA [Anopheles gambiae str. PEST]
 gi|116123421|gb|EAA12308.3| AGAP007810-PA [Anopheles gambiae str. PEST]
          Length = 1878

 Score =  311 bits (798), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 241/803 (30%), Positives = 366/803 (45%), Gaps = 144/803 (17%)

Query: 256  ENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVMEHPQT 310
            E  +E+   I+D +    G   K A      + V+ VPP+  R P+    G +  +   T
Sbjct: 209  ERVYEILKHITDEECFVLGMDPKFARPDWMIITVLPVPPLAVR-PAVVMFGATKNQDDLT 267

Query: 311  VLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS----- 365
              LS +++AN  L          A VI      LQ  V  L D       + M       
Sbjct: 268  HKLSDIIKANNELKKNEATGA-AAHVIAENIKMLQFHVATLVDNDMPGMPKAMQKSGKPL 326

Query: 366  -GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTP 424
              I   L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  +T+PE VTP
Sbjct: 327  KAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSVAQNMTFPELVTP 386

Query: 425  WNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDS 484
            +N+ ++++ +  G   +PGA + +                  G ++D        P K S
Sbjct: 387  FNIDRMQELVRRGNSQYPGAKYIVR---------------DNGERIDLR----FHP-KSS 426

Query: 485  DNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNAD 543
            D   + G  V RHL+D D+V+ NRQPTLHK S+M H V+VL    T RM+ +  S YNAD
Sbjct: 427  DLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPW-STFRMNLSCTSPYNAD 485

Query: 544  FDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFL 603
            FDGDEMN+H PQ   +RAE  NI     Q + P    P+  ++QD + +   +TK+D F+
Sbjct: 486  FDGDEMNLHVPQSMETRAEIENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 545

Query: 604  NRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVIT 663
             +++   LL         L ++ GK  Q               PAI KP+PLWTGKQ+ T
Sbjct: 546  EKEQMMNLLMF-------LPTWDGKMPQ---------------PAILKPKPLWTGKQIFT 583

Query: 664  AVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKK 723
             +                  +P +                     + +T+  H D     
Sbjct: 584  LI------------------IPGNV-------------------NMIRTHSTHPD----- 601

Query: 724  KEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQEL 781
                        E +    K     + K+++   DL+ G++ K         L+H V   
Sbjct: 602  ------------EEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHIVFLE 649

Query: 782  YGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEE--IGKRVH 839
             G   AG     +  +   +L + G + G+ D +       E +  +  ++E  IG    
Sbjct: 650  LGHEIAGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYAEIQRAIKKAKEDVIGVIQK 709

Query: 840  LEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN---KHTSSSVINELL 896
               +ELE                     G+     F+ ++   LN     T  S    L 
Sbjct: 710  AHNMELEPTP------------------GNTLRQTFENQVNRILNDARDKTGGSAKKSL- 750

Query: 897  SEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPW 956
                   T  N +  M  SG+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F   
Sbjct: 751  -------TEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKD 803

Query: 957  DWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKI 1016
            D+ P + GF+ + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR LIK +E + +
Sbjct: 804  DYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 863

Query: 1017 SYDYSVRDADGSIVQFCYGEDGV 1039
            +YD +VR++ G ++Q  YGEDG+
Sbjct: 864  NYDGTVRNSVGQLIQLRYGEDGL 886



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 61/93 (65%), Gaps = 1/93 (1%)

Query: 1114 ADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGE 1173
            A++F  N  A +  +  ++ +F  +   PGE VG LA+QS+GEP+TQMTLNTFH AG   
Sbjct: 1045 AEEFRLNNEAFEWLIGEIETRFQQAQCNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSS 1104

Query: 1174 MNVTLGIPRLQEILTIASKDIKTPVITCPLLVG 1206
             NVTLG+PRL+EI+ I SK  K P +T  L  G
Sbjct: 1105 KNVTLGVPRLKEIINI-SKRPKAPSLTVFLTGG 1136



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 27/50 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
           C+TC      CPGHFGHIDL  PV++         +L+ +CF+C     S
Sbjct: 66  CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS 115


>gi|324120506|dbj|BAJ78644.1| RNA polymerase II largest subunit [Metriocampa sp. 44]
          Length = 1738

 Score =  311 bits (798), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 243/818 (29%), Positives = 375/818 (45%), Gaps = 152/818 (18%)

Query: 252  EKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVME 306
            E++WE    +   ISD +    G   K A      + V+ VPP+  R P+    G +  +
Sbjct: 192  ERVWE----IFRHISDEECYIMGMDPKYARPDWMIVTVLPVPPLAVR-PAVVMFGSARNQ 246

Query: 307  HPQTVLLSKVLQANIYLANAYVNQPDNAK--VIVARWMNLQQSVNVLFDGKNAAGQRDMA 364
               T  LS +++AN  L     N+   A   +++     LQ  V  L D       + M 
Sbjct: 247  DDLTHKLSDIIKANNELQR---NEQSGAATHILLENVKMLQFHVATLVDNDMPGLPKAMQ 303

Query: 365  S------GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTY 418
                    I   L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  LT+
Sbjct: 304  KSGRPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTF 363

Query: 419  PERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIV 478
            PE VTP+N+ K+++ +  G   +PGA + +                  G ++D       
Sbjct: 364  PEIVTPFNIDKMQELVRRGNSQYPGAKYIIR---------------DNGERIDLR----F 404

Query: 479  QPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 537
             P K SD   + G  V RH++DGD+++ NRQPTLHK S+M H V+VL    T RM+ +  
Sbjct: 405  HP-KSSDLHLQCGYKVERHIRDGDLIIFNRQPTLHKMSMMGHRVKVLPW-STFRMNLSVT 462

Query: 538  STYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT 597
            S YNADFDGDEMN+H PQ   +RAE  NI     Q + P    P+  ++QD + +   +T
Sbjct: 463  SPYNADFDGDEMNMHIPQSMETRAEVENIHITTRQIITPQANKPVMGIVQDTLTAVRKMT 522

Query: 598  KKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWT 657
            K+D FL +++   +L         L  + GK  Q               PAI KP+PLWT
Sbjct: 523  KRDVFLEKEQMLNILMH-------LPIWDGKMPQ---------------PAILKPKPLWT 560

Query: 658  GKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHK 717
            GKQV + +                  +P +                     + +T+  H 
Sbjct: 561  GKQVFSLI------------------IPGNV-------------------NMIRTHSAHP 583

Query: 718  DKS--GKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG-- 773
            D+   G  K +    PG+ K                +++   DLV G++ K         
Sbjct: 584  DEEDDGPYKWI---SPGDTK----------------VMVEHGDLVMGILCKKTLGTSAGS 624

Query: 774  LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEE 833
            L+H      G    G     +  +   +L + G + G+ D +       E +  +  ++E
Sbjct: 625  LLHICFVELGHEVCGQFYGNIQTVINNWLLLEGHSIGIGDSIADPQTYLEIQKTIKKAKE 684

Query: 834  IGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN---KHTSSS 890
                  +E ++     E++P              G+     F+ ++   LN     T  S
Sbjct: 685  ----DVIEVIQKAHNMELEPTP------------GNTLRQTFENQVNRILNDARDKTGGS 728

Query: 891  VINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTL 950
                L        T  N +  M  SGAKGS +N  Q+ + +GQQ +EGKR+P     +TL
Sbjct: 729  AKKSL--------TEYNNLKAMVVSGAKGSNINISQVIACVGQQNVEGKRIPFGFRKRTL 780

Query: 951  PSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1010
            P F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY+QR LIK 
Sbjct: 781  PHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKA 840

Query: 1011 LECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFIS 1048
            +E + + YD ++R++ G ++Q  YGEDG+      F S
Sbjct: 841  MESVMVHYDGTIRNSVGQLIQLRYGEDGLAGEHVEFQS 878



 Score = 84.0 bits (206), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 62/91 (68%), Gaps = 1/91 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
             ++ A++F  +  A +  +  ++ +F  +  QPGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1024 TKQVAEEFRLSSEAFEWLIGEIETRFQQAQVQPGEMVGALAAQSLGEPATQMTLNTFHFA 1083

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVIT 1200
            G    NVTLG+PRL+EI+ I SK  K P +T
Sbjct: 1084 GVSSKNVTLGVPRLKEIINI-SKKPKAPSLT 1113



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1  CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
          C+TC      CPGHFGHIDL  PV++         +L+ +CF+C
Sbjct: 46 CQTCAGNMTECPGHFGHIDLAKPVFHSGFLVKSIKILRCVCFYC 89


>gi|281352199|gb|EFB27783.1| hypothetical protein PANDA_013866 [Ailuropoda melanoleuca]
          Length = 1989

 Score =  311 bits (798), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 150/824 (18%)

Query: 242  LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
            L P  V +I +++ + E     F+  M+     + A      + V+ VPP+  R P+   
Sbjct: 216  LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266

Query: 300  GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
             G +  +   T  L+ +++ N  L     N    A VI      LQ  V  + D +    
Sbjct: 267  QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325

Query: 360  QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
             R M         + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L+++++G+P   A
Sbjct: 326  PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385

Query: 414  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
              +T+ E VTP+N+ +L++ +  G   +PGA + +    D++     P    + +  G K
Sbjct: 386  ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445

Query: 470  LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
                +                  V RH+ DGD+V+ NRQPTLHK S+M H VR+L    T
Sbjct: 446  AFPPQ------------------VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 486

Query: 530  LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
             R++ +  + YNADFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD 
Sbjct: 487  FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 546

Query: 590  IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
            + +    TK+D FL R E   LL         L ++ GK  Q               PA+
Sbjct: 547  LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAV 584

Query: 650  WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
             KP PLWTGKQ+ + ++  HI                                       
Sbjct: 585  LKPRPLWTGKQIFSLIVPGHI--------------------------------------N 606

Query: 709  LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
              +T+  H D   SG  K +  G                   + K+++   +L+ G++ K
Sbjct: 607  CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 647

Query: 767  AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
                     LVH      G +      S +  +   +L + G T G+ D +      ++ 
Sbjct: 648  KSLGTSAGSLVHISYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 707

Query: 825  KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
            +N +  +    K+  +E +E     E++P              G+     F+ ++   LN
Sbjct: 708  QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 751

Query: 885  --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
              +  + S   + LSE        N    M  SGAKGSK+N  Q+ + +GQQ +EGKR+P
Sbjct: 752  DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 804

Query: 943  RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
                 +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 805  FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 864

Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            +QR LIK++E + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 865  IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 908



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            + + A++F  +  A    L  ++ KF  ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1056 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1115

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1116 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1149



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++         +L+ +CFFC
Sbjct: 71  CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114


>gi|120561168|gb|ABM26979.1| RNA polymerase II largest subunit [Nosema empoascae]
          Length = 764

 Score =  311 bits (798), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 239/803 (29%), Positives = 386/803 (48%), Gaps = 137/803 (17%)

Query: 230  GFKKQKDLFSGPLLPSD--VKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
             F K +D   G ++ +   V  I +K+ + + E   F S   +  +          L V+
Sbjct: 76   AFMKGEDNSEGKVILTGERVYSIFKKISDEDIEYLGFDSQYSRPEW--------LILTVL 127

Query: 288  LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
            LVPP   R PS   + ++  E   T  L+ ++++N YL   Y  +     +I      LQ
Sbjct: 128  LVPPPAVR-PSIVMEGMLRAEDDLTHKLADIIKSNTYLKK-YELEGAPGHIIRDYEQLLQ 185

Query: 346  QSVNVLFDGKNAAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
              +  L D  + +GQ        R + S I   L+ KEG  R  LMGKRV+++ RSVI+ 
Sbjct: 186  FHIATLID-NDLSGQPQALQKSGRPLKS-ISARLKGKEGRVRGNLMGKRVDFSARSVITA 243

Query: 398  DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
            D  +++ E+G+P   A   T+PE++TP+NV +L   + NG  ++PGA + +         
Sbjct: 244  DANISLEEVGVPIEVAKIHTFPEKITPFNVQRLEKLVENGPNVYPGANYVIR-------- 295

Query: 458  PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIM 517
             N   RI     L  +RG I           EG +V RH+QDGD+VL NRQP+LHK S+M
Sbjct: 296  -NDGQRID----LKFNRGDIKLE--------EGYVVERHMQDGDIVLFNRQPSLHKMSMM 342

Query: 518  AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
            AH VRV+ G KT R++ +  S YNADFDGDEMN+H PQ   + +E   I   + Q + P 
Sbjct: 343  AHKVRVMGG-KTFRLNSSVTSPYNADFDGDEMNLHMPQSFNTISELQEICMVSKQVLGPQ 401

Query: 578  NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSG---LGSFTGKPGQRVL 634
            +  P+  ++QD +    L T +D F +++E  Q++YS  +       L S   + G++  
Sbjct: 402  SNKPVMGIVQDTLTGLRLFTLRDAFFDKNEMMQIVYSIDLERYNDICLDS-ESREGKKNN 460

Query: 635  ISRSEQEVLPLL--PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 692
            +      +L L+  PAI KP+ LWTGKQ+++ +                  LP   ++  
Sbjct: 461  LQSKGYNLLKLIESPAINKPKQLWTGKQILSFI------------------LPNILYENN 502

Query: 693  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL 752
             N  ++ D++                                             S+  +
Sbjct: 503  SNEQREGDKEN-------------------------------------------YSDTSV 519

Query: 753  LIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFL-QMHGFTC 809
            +I   ++V G+IDK        GL+H +   +GSN        + ++ T FL  +  FT 
Sbjct: 520  VIVNGEIVSGIIDKRAVGATQGGLIHIITNDFGSNRVTLFFDDIEKIITKFLMNISVFTM 579

Query: 810  GVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGD 869
            G+ D +     + E   ++ G+ +  K              +D I  K++  K  R  G 
Sbjct: 580  GIGDTV----ADAETLKYVRGAIDNAK------------VSVDEIIYKAQNNKLERLPGM 623

Query: 870  AAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISS 929
                 F+ ++   LNK    S  +   ++G L     N +  M  +G+KGS +N  Q+++
Sbjct: 624  TMKESFESQVNYVLNKARDVSGTS---TQGSLNRC--NNMGTMVLAGSKGSFINILQVTA 678

Query: 930  HLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREG 989
             +GQQ +EGKR+P   + +TLP F   D++ ++ GF+ + +L+GL P+E++FH M GREG
Sbjct: 679  CVGQQNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFHAMGGREG 738

Query: 990  LVDTAVKTSRSGYLQRCLIKNLE 1012
            L+DTA+KT+ +GY+QR L+K  E
Sbjct: 739  LIDTAIKTAETGYIQRRLVKAKE 761


>gi|195479340|ref|XP_002100852.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
 gi|194188376|gb|EDX01960.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
          Length = 1889

 Score =  311 bits (798), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 239/805 (29%), Positives = 369/805 (45%), Gaps = 144/805 (17%)

Query: 252  EKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVME 306
            E++WE    +   I+D +    G   K A      + V+ VPP+  R P+    G +  +
Sbjct: 211  ERVWE----ILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVR-PAVVMFGAAKNQ 265

Query: 307  HPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS- 365
               T  LS +++AN  L     +    A VI      LQ  V  L D       R M   
Sbjct: 266  DDLTHKLSDIIKANNELRKNEASG-AAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324

Query: 366  -----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE 420
                  I   L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  LT+PE
Sbjct: 325  GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384

Query: 421  RVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP 480
             VTP+N+ ++++ +  G   +PGA + +                  G ++D        P
Sbjct: 385  LVTPFNIDRMQELVRRGNSQYPGAKYIVR---------------DNGERIDLR----FHP 425

Query: 481  GKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 539
             K SD   + G  V RHL+D D+V+ NRQPTLHK S+M H V+VL    T RM+ +  S 
Sbjct: 426  -KSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPW-STFRMNLSCTSP 483

Query: 540  YNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
            YNADFDGDEMN+H PQ   +RAE  NI     Q + P    P+  ++QD + +   +TK+
Sbjct: 484  YNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKR 543

Query: 600  DTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
            D F+ R++   LL         L ++ GK  Q               P I KP PLWTGK
Sbjct: 544  DVFITREQVMNLLMF-------LPTWDGKMPQ---------------PCILKPRPLWTGK 581

Query: 660  QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
            Q+ + +                  +P +                     + +T+  H D 
Sbjct: 582  QIFSLI------------------IPGNV-------------------NMIRTHSTHPD- 603

Query: 720  SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHT 777
                            E +    K     + K+++   +L+ G++ K         L+H 
Sbjct: 604  ----------------EEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHI 647

Query: 778  VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKR 837
                 G + AG     +  +   +L + G + G+ D +     + +  N +  + +  K 
Sbjct: 648  CFLELGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTI----ADPQTYNEIQQAIKKAKD 703

Query: 838  VHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN---KHTSSSVINE 894
              +  ++     E++P              G+     F+ K+   LN     T  S    
Sbjct: 704  DVINVIQKAHNMELEPTP------------GNTLRQTFENKVNRILNDARDKTGGSAKKS 751

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
            L        T  N +  M  SG+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F 
Sbjct: 752  L--------TEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFI 803

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
              D+ P + GF+ + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR LIK +E +
Sbjct: 804  KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 863

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGV 1039
             ++YD +VR++ G ++Q  YGEDG+
Sbjct: 864  MVNYDGTVRNSVGQLIQLRYGEDGL 888



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F  + A PGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ I 
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI- 1122

Query: 1191 SKDIKTPVITCPLLVG 1206
            SK  K P +T  L  G
Sbjct: 1123 SKKPKAPSLTVFLTGG 1138



 Score = 57.4 bits (137), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 13/115 (11%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC-------HHFK----- 48
           C+TC      CPGHFGHIDL  PV++         +L+ +CF+C       H+ K     
Sbjct: 67  CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 49  -ASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTP 102
             S+ +  K +  +  + KG  I     D+DL  E+  P+ +       C    P
Sbjct: 127 MKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQP 181


>gi|195446609|ref|XP_002070845.1| GK25468 [Drosophila willistoni]
 gi|194166930|gb|EDW81831.1| GK25468 [Drosophila willistoni]
          Length = 1890

 Score =  311 bits (798), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 238/805 (29%), Positives = 369/805 (45%), Gaps = 144/805 (17%)

Query: 252  EKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVME 306
            E++WE    +   I+D +    G   K A      + V+ VPP+  R P+    G +  +
Sbjct: 211  ERVWE----ILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVR-PAVVMFGAAKNQ 265

Query: 307  HPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS- 365
               T  L+ +++AN  L     +    A VI      LQ  V  L D       R M   
Sbjct: 266  DDLTHKLADIIKANNELRKNEASG-AAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324

Query: 366  -----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE 420
                  I   L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  LT+PE
Sbjct: 325  GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384

Query: 421  RVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP 480
             VTP+N+ ++++ +  G   +PGA + +                  G ++D        P
Sbjct: 385  LVTPFNIDRMQELVRRGNSQYPGAKYIVR---------------DNGERIDLR----FHP 425

Query: 481  GKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 539
             K SD   + G  V RHL+D D+V+ NRQPTLHK S+M H V+VL    T RM+ +  S 
Sbjct: 426  -KSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWS-TFRMNLSCTSP 483

Query: 540  YNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
            YNADFDGDEMN+H PQ   +RAE  NI     Q + P    P+  ++QD + +   +TK+
Sbjct: 484  YNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKR 543

Query: 600  DTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
            D F+ R++   LL         L ++ GK  Q               P I KP P+WTGK
Sbjct: 544  DVFITREQMMNLLMF-------LPTWDGKMPQ---------------PCILKPRPMWTGK 581

Query: 660  QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
            Q+ + +                  +P +                     + +T+  H D 
Sbjct: 582  QIFSLI------------------IPGNV-------------------NMIRTHSTHPD- 603

Query: 720  SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHT 777
                            E +    K     + K+++   +L+ G++ K         L+H 
Sbjct: 604  ----------------EEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHI 647

Query: 778  VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKR 837
                 G + AG     +  +   +L + G + G+ D +     + +  N +  + +  K 
Sbjct: 648  CFLELGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTI----ADPQTYNEIQMAIKKAKD 703

Query: 838  VHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN---KHTSSSVINE 894
              +  ++     E+DP              G+     F+ K+   LN     T  S    
Sbjct: 704  DVINVIQKAHNMELDPTP------------GNTLRQTFENKVNRILNDARDKTGGSAKKS 751

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
            L        T  N +  M  SG+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F 
Sbjct: 752  L--------TEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFI 803

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
              D+ P + GF+ + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR LIK +E +
Sbjct: 804  KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 863

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGV 1039
             ++YD +VR++ G ++Q  YGEDG+
Sbjct: 864  MVNYDGTVRNSVGQLIQLRYGEDGL 888



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F  + A PGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ I 
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI- 1122

Query: 1191 SKDIKTPVITCPLLVG 1206
            SK  K P +T  L  G
Sbjct: 1123 SKKPKAPSLTVFLTGG 1138



 Score = 57.4 bits (137), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 13/115 (11%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC-------HHFK----- 48
           C+TC      CPGHFGHIDL  PV++         +L+ +CF+C       H+ K     
Sbjct: 67  CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 49  -ASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTP 102
             S+ +  K +  +  + KG  I     D+DL  E+  P+ +       C    P
Sbjct: 127 MKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHFQP 181


>gi|157741630|gb|ABV69520.1| RNA polymerase II largest subunit, partial [Verrucula inconnexaria]
          Length = 999

 Score =  311 bits (798), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 218/677 (32%), Positives = 323/677 (47%), Gaps = 139/677 (20%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  RQ LMGKRV+++ R+VI+ DP L+++E+G+P   A  LTYPE VT +N+ +L
Sbjct: 255  LKGKEGRLRQNLMGKRVDFSARTVITSDPNLSLDEVGVPRSIARTLTYPETVTRFNISRL 314

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
            +  + NG E HPGA + + +            RI +    DTS+ A+            G
Sbjct: 315  KAFVTNGPEAHPGARYVIRETGE---------RIDLRYHKDTSQIALKT----------G 355

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RHL DGDV+L NRQP   +  +M +         T R++ +  + YNADFDGDEMN
Sbjct: 356  WKVERHLMDGDVILFNRQPXXXRVRVMPY--------STFRLNLSVTTPYNADFDGDEMN 407

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E SRAE   +       V P    PL  ++QD +     + ++D FL+R+E   
Sbjct: 408  LHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLSREEVMN 467

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            ++                     L       V+P  PAI KP P WTGKQVI+ VL    
Sbjct: 468  IM---------------------LWVPDWDGVIP-QPAIVKPRPRWTGKQVISMVL---- 501

Query: 671  RGRPPF--VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
               PP   +V   GK PQ                                          
Sbjct: 502  ---PPALNLVRIDGKEPQ------------------------------------------ 516

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNT 786
              PGE         +     +  L +    L+ G+ +K        G++HT+   +G  T
Sbjct: 517  -PPGE---------RSAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHET 566

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE 846
            A    +    +   +L  +GF+ G+ D +                 ++G    +E ++LE
Sbjct: 567  AMAFFNGAQTVVNYWLLHNGFSIGIGDTV----------------PDVGT---VEKIKLE 607

Query: 847  ---DGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKP 903
                 AE++ I   +  E      G      F+ K+++ LN     +      +E  LK 
Sbjct: 608  VDRKKAEVERITQMAVAEDLEALPGMNVRETFESKVSAALNGARDEA---GTATENSLKD 664

Query: 904  TGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAG 963
               N I  M  +G+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D++  + 
Sbjct: 665  I-NNAIQ-MARAGSKGSTINISQMTAIVGQQSVEGKRIPFGFKYRTLPHFAKDDYSAASK 722

Query: 964  GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
            GF+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD +VR
Sbjct: 723  GFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVR 782

Query: 1024 DADGSIVQFCYGEDGVD 1040
            D+ G+IVQF YGEDG+D
Sbjct: 783  DSRGNIVQFIYGEDGLD 799


>gi|328772047|gb|EGF82086.1| hypothetical protein BATDEDRAFT_86817 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1797

 Score =  311 bits (798), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 248/806 (30%), Positives = 376/806 (46%), Gaps = 143/806 (17%)

Query: 251  IEKLWENEFELCSFISDMQQQGFGKKAGHS---IFFLGVVLVPPIKFRLPSKGGDSVM-- 305
            IE   E    L   ISD      G  A  +      +  + VPP+  R PS   D     
Sbjct: 211  IEMTPEKTLTLLRSISDQDATDMGLSADWARPEWMIITTLPVPPMPVR-PSISMDGAGRG 269

Query: 306  EHPQTVLLSKVLQANIYL-------ANAY-VNQPDNA-KVIVARWMNLQQSVNVLFDGKN 356
            E   T  L  +++ANI L       A A+ VN+ +N  +  VA +MN    +  L     
Sbjct: 270  EDDLTHKLMDIIKANISLKRHETEGAPAHIVNEFENLLQFHVATYMN--NDIANLPQAMQ 327

Query: 357  AAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRL 416
             +G R + S I   L+ KEG  R  LMGKRV+++ R+VI+ DP L+++++G+P   A  L
Sbjct: 328  KSG-RPLKS-IAARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQVGVPRSIARNL 385

Query: 417  TYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGA 476
            T+PE VTP+N+  L+  + NG   HPGA + +                  G ++D     
Sbjct: 386  TFPETVTPYNIDILQQMVQNGPNEHPGAKYVIR---------------DNGERVDLRYS- 429

Query: 477  IVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYAN 536
              + G D   ++ G  V RHL D D ++ NRQP+LHK S+M H V+++    T R++ + 
Sbjct: 430  --KRGGDIHLQY-GYKVERHLLDNDYIIFNRQPSLHKMSMMGHRVKIMP-YSTFRLNLSV 485

Query: 537  CSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALL 596
             S YNADFDGDEMN+H PQ   +RAE   +     Q V P    P+  ++QD +      
Sbjct: 486  TSPYNADFDGDEMNMHVPQSHETRAEIQGLCMVPLQIVSPQKNAPVMGIVQDTLCGIRKF 545

Query: 597  TKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLW 656
            +K+DTFL RD    LL         +  + G              ++P  PAI KP PLW
Sbjct: 546  SKRDTFLKRDLMMNLLM-------WVPDWDG--------------IIP-TPAILKPIPLW 583

Query: 657  TGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMH 716
            T KQ+I+ +L  I                                       L   +  H
Sbjct: 584  TAKQIISLILPKI--------------------------------------NLVGFHAAH 605

Query: 717  KDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GL 774
             D      E  +  PG+ K                +LI   +L+ G++ K        G+
Sbjct: 606  PD-----NEKTDISPGDTK----------------VLIEDGELLMGILCKRTVGSSANGI 644

Query: 775  VHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEI 834
            +HT     G +      +   R+   +L  +GF+ G+ D +     +R+    ++ +   
Sbjct: 645  IHTSMNELGPDVTMGFFNGTQRVINYWLLQNGFSIGIGDTI----ADRQTMETINDTIAH 700

Query: 835  GKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINE 894
             KR            E++ I  K++ +      G      F+  +  +LN+   ++  + 
Sbjct: 701  AKR------------EVNKIIQKAQTDTLEVLPGMTIRQSFESLVNQELNRARDNAGKS- 747

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
              +E  LK    N +  M  SG+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F 
Sbjct: 748  --AEKSLKEY--NNVKQMVVSGSKGSFINISQMTACVGQQNVEGKRIPFGFKDRTLPHFT 803

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
              D +P + GF+ + +L GL PQE++FH M GREGL+DTAVKT+ +GY+QR L+K LE +
Sbjct: 804  RDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDV 863

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGVD 1040
               YD +VR+A G IVQF YGEDG++
Sbjct: 864  MAKYDGTVRNALGDIVQFTYGEDGME 889



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/71 (56%), Positives = 53/71 (74%), Gaps = 1/71 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
             L  +  +F  ++  PGE VG +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI
Sbjct: 1064 LLGEIDARFNQAIVHPGEMVGTIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEI 1123

Query: 1187 LTIASKDIKTP 1197
            + +A K+IKTP
Sbjct: 1124 INVA-KNIKTP 1133



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKA 49
           C+TCG+    CPGHFGHI+L  PV++     ++  +L+ +C +C   K 
Sbjct: 71  CQTCGENMTDCPGHFGHIELAKPVFHQGFLKIIKKVLECVCHYCGKLKV 119


>gi|520509|gb|AAA50225.1| RNA polymerase II, largest subunit, partial [Crassostrea gigas]
          Length = 1340

 Score =  311 bits (798), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 238/818 (29%), Positives = 370/818 (45%), Gaps = 168/818 (20%)

Query: 260  ELCSFISDMQQQGFGKKAGHS---IFFLGVVLVPPIKFRLPS--KGGDSVMEHPQTVLLS 314
            E+   ISD + Q  G    +S      + V+ VPP+  R P+    G +  +   T  L+
Sbjct: 134  EIFKRISDDECQVLGMDHRYSRPDWMIVTVMPVPPLAVR-PAVVMFGSARNQDDLTHKLA 192

Query: 315  KVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQ--------RDMASG 366
             +++AN  L      Q   A  I++  M + Q     F      G         R + S 
Sbjct: 193  DIIKANNQLRRN--EQNGAASHIISEDMKMLQYHVATFTDNELPGLPKAVQKSGRPLKS- 249

Query: 367  ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
            + Q L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  +T+PE VTP+N
Sbjct: 250  VKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPELVTPFN 309

Query: 427  VVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGK 482
            + ++++ +  GA  +PGA + +    +++     P    + + IG K++           
Sbjct: 310  IDRMQELVRRGANQYPGAKYIIRDNGERIDLRFHPKASDLHLQIGYKVE----------- 358

Query: 483  DSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNA 542
                        RH+QD D ++ NRQPTLHK S+M H V+VL    T R++ +  + YNA
Sbjct: 359  ------------RHMQDNDYIVFNRQPTLHKMSMMCHKVKVLPWS-TFRLNLSVTTPYNA 405

Query: 543  DFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTF 602
            DFDGDEMN+H PQ   ++AE  N+       + P    P+  ++QD + +   +TK+D F
Sbjct: 406  DFDGDEMNLHLPQSLETKAEISNLALVPRMIITPQANRPVMGIVQDTLTAVRKMTKRDVF 465

Query: 603  LNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI 662
            L+R +   LL         L  + G   Q               PAI KP+PLWTGKQ+ 
Sbjct: 466  LDRGQVMNLLMF-------LPRWDGHVPQ---------------PAILKPKPLWTGKQLF 503

Query: 663  TAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGK 722
            + V+     GR   +                                 +T+  H D    
Sbjct: 504  SLVIP----GRTNCI---------------------------------RTHSTHPD---- 522

Query: 723  KKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQE 780
                         E +K   K     + K+LI    L+ G++ K     +   L H V  
Sbjct: 523  -------------EEDKGPYKWISPGDTKVLIEDGMLISGILCKKTLGTSSGSLAHVVFM 569

Query: 781  LYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGK 836
             YG   AG +   +  L   +L + G + G+ D +       D +   K   H   E+ +
Sbjct: 570  EYGWVIAGEMYGHIQTLVNNWLLLEGHSIGIGDTIADPQTYIDIQDTIKKAKHDVIEVIE 629

Query: 837  RVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELL 896
            + H + LE   G  +                                 + T  +++N +L
Sbjct: 630  KAHNDDLEPTPGNTL---------------------------------RQTFENMVNRIL 656

Query: 897  SEGLLKPTGKNWISL--------MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGK 948
            ++   K   K   SL        M  +G+KGSK+N  Q+ + +GQQ +EGKR+P     +
Sbjct: 657  NDARDKTGSKAQKSLSDYNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHR 716

Query: 949  TLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1008
            TLP F   D+ P + GF+ + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR LI
Sbjct: 717  TLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLI 776

Query: 1009 KNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            K +E + + YD +VR+    +VQ  YGEDG+D     F
Sbjct: 777  KAMESVMVKYDGTVRNQVEQLVQLRYGEDGLDATHVEF 814



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            A++  ++F  +  A +  +  V+ +F  + A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 962  AKRVTEEFRLSSEAFEWLIGEVESRFQQAQAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1021

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+EI+ I SK  KTP +T  L+
Sbjct: 1022 GVSAKNVTLGVPRLKEIINI-SKKPKTPSLTVYLI 1055


>gi|83320422|gb|ABC02838.1| RNA polymerase II largest subunit, partial [Batrachochytrium
            dendrobatidis]
          Length = 985

 Score =  311 bits (797), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 248/806 (30%), Positives = 376/806 (46%), Gaps = 143/806 (17%)

Query: 251  IEKLWENEFELCSFISDMQQQGFGKKAGHS---IFFLGVVLVPPIKFRLPSKGGDSVM-- 305
            IE   E    L   ISD      G  A  +      +  + VPP+  R PS   D     
Sbjct: 114  IEMTPEKTLTLLRSISDQDATDMGLSADWARPEWMIITTLPVPPMPVR-PSISMDGAGRG 172

Query: 306  EHPQTVLLSKVLQANIYL-------ANAY-VNQPDNA-KVIVARWMNLQQSVNVLFDGKN 356
            E   T  L  +++ANI L       A A+ VN+ +N  +  VA +MN    +  L     
Sbjct: 173  EDDLTHKLMDIIKANISLKRHETEGAPAHIVNEFENLLQFHVATYMN--NDIANLPQAMQ 230

Query: 357  AAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRL 416
             +G R + S I   L+ KEG  R  LMGKRV+++ R+VI+ DP L+++++G+P   A  L
Sbjct: 231  KSG-RPLKS-IAARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQVGVPRSIARNL 288

Query: 417  TYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGA 476
            T+PE VTP+N+  L+  + NG   HPGA + +                  G ++D     
Sbjct: 289  TFPETVTPYNIDILQQMVQNGPNEHPGAKYVIR---------------DNGERVDLRYS- 332

Query: 477  IVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYAN 536
              + G D   ++ G  V RHL D D ++ NRQP+LHK S+M H V+++    T R++ + 
Sbjct: 333  --KRGGDIHLQY-GYKVERHLLDNDYIIFNRQPSLHKMSMMGHRVKIMP-YSTFRLNLSV 388

Query: 537  CSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALL 596
             S YNADFDGDEMN+H PQ   +RAE   +     Q V P    P+  ++QD +      
Sbjct: 389  TSPYNADFDGDEMNMHVPQSHETRAEIQGLCMVPLQIVSPQKNAPVMGIVQDTLCGIRKF 448

Query: 597  TKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLW 656
            +K+DTFL RD    LL         +  + G              ++P  PAI KP PLW
Sbjct: 449  SKRDTFLKRDLMMNLLM-------WVPDWDG--------------IIP-TPAILKPIPLW 486

Query: 657  TGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMH 716
            T KQ+I+ +L  I                                       L   +  H
Sbjct: 487  TAKQIISLILPKIN--------------------------------------LVGFHAAH 508

Query: 717  KDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GL 774
             D      E  +  PG+ K                +LI   +L+ G++ K        G+
Sbjct: 509  PD-----NEKTDISPGDTK----------------VLIEDGELLMGILCKRTVGSSANGI 547

Query: 775  VHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEI 834
            +HT     G +      +   R+   +L  +GF+ G+ D +     +R+    ++ +   
Sbjct: 548  IHTSMNELGPDVTMGFFNGTQRVINYWLLQNGFSIGIGDTI----ADRQTMETINDTIAH 603

Query: 835  GKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINE 894
             KR            E++ I  K++ +      G      F+  +  +LN+   ++  + 
Sbjct: 604  AKR------------EVNKIIQKAQTDTLEVLPGMTIRQSFESLVNQELNRARDNAGKS- 650

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
              +E  LK    N +  M  SG+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F 
Sbjct: 651  --AEKSLKEY--NNVKQMVVSGSKGSFINISQMTACVGQQNVEGKRIPFGFKDRTLPHFT 706

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
              D +P + GF+ + +L GL PQE++FH M GREGL+DTAVKT+ +GY+QR L+K LE +
Sbjct: 707  RDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDV 766

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGVD 1040
               YD +VR+A G IVQF YGEDG++
Sbjct: 767  MAKYDGTVRNALGDIVQFTYGEDGME 792


>gi|19074219|ref|NP_584825.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
 gi|19068861|emb|CAD25329.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
          Length = 1395

 Score =  311 bits (797), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 196/480 (40%), Positives = 276/480 (57%), Gaps = 69/480 (14%)

Query: 734  EKEAEKNKSKEKELSEEKLL-IYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTL 790
            E E    K+  +E SEE++L I + ++V G++DK         L+H   E+ G  T+  L
Sbjct: 602  EIETNVPKNAWREHSEERILRIREGNIVTGILDKNSLGPTFKSLIHACGEIKGFATSNDL 661

Query: 791  LSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG-A 849
            L+ +  +   +L M+GFT G+DDLL+ K+ +++R+       E+ +    EA EL+    
Sbjct: 662  LTYIGWVGNRYLLMYGFTIGIDDLLLDKEADKKRR-------EVVRVKDQEAKELQRRYV 714

Query: 850  EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWI 909
            E +P       +KA          Y D  M +++N  TS  ++   +  GL K   +N +
Sbjct: 715  EANPDFYLYADKKA----------YLDSVMRTEMNSVTSE-IVKVSVPSGLQKSFPENNM 763

Query: 910  SLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDR 969
             L+  +G+KGS VN  QIS  LGQQELEG+RVP M SGKTLP F   D +P +GG+I  R
Sbjct: 764  ELIIATGSKGSIVNLSQISGALGQQELEGQRVPIMASGKTLPCFAALDPSPSSGGYIYHR 823

Query: 970  FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSI 1029
            FLTG+   +Y+FHCMAGREGL+DTA+KT+ SGYLQRCLIK++E  K+ YD SVR     +
Sbjct: 824  FLTGIDLPQYFFHCMAGREGLIDTAIKTANSGYLQRCLIKHMEEAKVEYDMSVR-IGKRV 882

Query: 1030 VQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCS 1089
            +QF YGEDG+D  ++S++   +            RN          + G++  ++ K   
Sbjct: 883  IQFMYGEDGLDCTKSSYLDDAEFFK---------RN--------VLLFGKSASIVSK--- 922

Query: 1090 GQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQ-DFL-----KLVKHKFVLSLAQPG 1143
                        L D  KD        FLS +  KQ D L     + +  +++ SLA PG
Sbjct: 923  ------------LEDRYKD--------FLSLKFRKQIDLLDDELRRFLADRYICSLADPG 962

Query: 1144 EPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            E VG++A+QSVGEPSTQMTLNTFHLAG G  NVTLG+PRL+EIL  ASK I+TP+IT P+
Sbjct: 963  ESVGVIAAQSVGEPSTQMTLNTFHLAGVGAKNVTLGVPRLREILITASKSIRTPLITVPI 1022



 Score =  288 bits (737), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 170/434 (39%), Positives = 255/434 (58%), Gaps = 65/434 (14%)

Query: 242 LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
           L P  V+++++ L+ NE +L   I   +  G        +FF+  + V P +FR      
Sbjct: 221 LSPDAVRELMDDLFSNEADLIESIFFRRDPG--------MFFISNLPVIPNRFRPMIVLD 272

Query: 302 DSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG-- 359
               E+ QT+ L+ +L+ ++ +              ++ W  LQ ++   FD KN +   
Sbjct: 273 GKKAENFQTLYLNDILRVSVLVTKD-----------LSYWPELQAAILSSFDNKNISKWS 321

Query: 360 -QRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTY 418
             R +  G  Q+LE+K+GLFR+ +MGKRVN+A R+VISPDP L   EIGIP  FA  LT+
Sbjct: 322 RTRMVPPGHKQILERKDGLFRRNIMGKRVNFAARTVISPDPNLETREIGIPLVFAEALTF 381

Query: 419 PERVTPWNVVKLRDSIINGAEIHPGATHYLD---KLSTMRLPPNKKMRISIGRKLDTSRG 475
           PER   +NV +L+ +++NG   +PG+ +  D    LS   +P  K+  ++  + LD    
Sbjct: 382 PERAASFNVDRLKKAVVNGP-TYPGSLYLQDGDVMLSLAHMPDEKRYALA-NQLLD---- 435

Query: 476 AIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYA 535
                GK        K+V+RHL DGDVVL+NRQPTLH+PSIMAH  RVL+ E+TLRMHYA
Sbjct: 436 -----GK--------KVVWRHLVDGDVVLMNRQPTLHRPSIMAHKCRVLRKERTLRMHYA 482

Query: 536 NCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAAL 595
           NC +YNADFDGDEMNVHFPQ+  S AE+ +IV  ++ Y+ P+NG P+R L+QDHIV   +
Sbjct: 483 NCKSYNADFDGDEMNVHFPQNYASEAESRHIVMNDSNYLVPTNGKPIRGLVQDHIVIVTV 542

Query: 596 LTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPL 655
           LT KD+F + +++  L+ ++G+S            +R+++ R         P I KP  L
Sbjct: 543 LTMKDSFFSEEDYFTLV-NAGLSD-----------RRIVLDR---------PCIVKPARL 581

Query: 656 WTGKQVITAVLNHI 669
           ++G+QVI+ +L ++
Sbjct: 582 YSGRQVISTILKNL 595



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           CKTC      CPGHFGHI L   V NP+ F+ L+++++  CF C HF+ +  +      K
Sbjct: 59  CKTCNLSFLNCPGHFGHIKLSRIVLNPMFFDSLFSIVRCYCFQCKHFRITNYDRLILFCK 118

Query: 61  LELIIKGDIIAAKSLD 76
             L++ G+   A+ LD
Sbjct: 119 FSLLLNGE--EAEDLD 132


>gi|449328924|gb|AGE95199.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi]
          Length = 1395

 Score =  311 bits (796), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 196/480 (40%), Positives = 276/480 (57%), Gaps = 69/480 (14%)

Query: 734  EKEAEKNKSKEKELSEEKLL-IYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTL 790
            E E    K+  +E SEE++L I + ++V G++DK         L+H   E+ G  T+  L
Sbjct: 602  EIETNVPKNAWREHSEERILRIREGNIVTGILDKNSLGPTFKSLIHACGEIKGFATSNDL 661

Query: 791  LSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDG-A 849
            L+ +  +   +L M+GFT G+DDLL+ K+ +++R+       E+ +    EA EL+    
Sbjct: 662  LTYIGWVGNRYLLMYGFTIGIDDLLLDKEADKKRR-------EVVRVKDQEAKELQRRYV 714

Query: 850  EIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWI 909
            E +P       +KA          Y D  M +++N  TS  ++   +  GL K   +N +
Sbjct: 715  EANPDFYLYADKKA----------YLDSVMRTEMNSVTSE-IVKVSVPSGLQKSFPENNM 763

Query: 910  SLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDR 969
             L+  +G+KGS VN  QIS  LGQQELEG+RVP M SGKTLP F   D +P +GG+I  R
Sbjct: 764  ELIIATGSKGSIVNLSQISGALGQQELEGQRVPIMASGKTLPCFAALDPSPSSGGYIYHR 823

Query: 970  FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSI 1029
            FLTG+   +Y+FHCMAGREGL+DTA+KT+ SGYLQRCLIK++E  K+ YD SVR     +
Sbjct: 824  FLTGIDLPQYFFHCMAGREGLIDTAIKTANSGYLQRCLIKHMEEAKVEYDMSVR-IGKRV 882

Query: 1030 VQFCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMIYKKCS 1089
            +QF YGEDG+D  ++S++   +            RN          + G++  ++ K   
Sbjct: 883  IQFMYGEDGLDCTKSSYLDDAEFFK---------RN--------VLLFGKSASIVSK--- 922

Query: 1090 GQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQ-DFL-----KLVKHKFVLSLAQPG 1143
                        L D  KD        FLS +  KQ D L     + +  +++ SLA PG
Sbjct: 923  ------------LEDRYKD--------FLSLKFRKQIDLLDDELRRFLADRYICSLADPG 962

Query: 1144 EPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
            E VG++A+QSVGEPSTQMTLNTFHLAG G  NVTLG+PRL+EIL  ASK I+TP+IT P+
Sbjct: 963  ESVGVIAAQSVGEPSTQMTLNTFHLAGVGAKNVTLGVPRLREILITASKSIRTPLITVPI 1022



 Score =  289 bits (739), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 171/434 (39%), Positives = 255/434 (58%), Gaps = 65/434 (14%)

Query: 242 LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
           L P  V+++++ L+ NE +L   I   +  G        +FF+  + V P +FR      
Sbjct: 221 LSPDAVRELMDDLFSNEADLIESIFFRRDPG--------MFFISNLPVIPNRFRPMIVLD 272

Query: 302 DSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG-- 359
               E+ QT+ L+ +L+ ++ +              ++ W  LQ ++   FD KN +   
Sbjct: 273 GKKAENFQTLYLNDILRVSVLVTKD-----------LSYWPELQAAILSSFDNKNISKWS 321

Query: 360 -QRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTY 418
             R +  G  Q+LE+K+GLFR+ +MGKRVN+A R+VISPDP L   EIGIP  FA  LT+
Sbjct: 322 RTRMVPPGHKQILERKDGLFRRNIMGKRVNFAARTVISPDPNLETREIGIPLVFAEALTF 381

Query: 419 PERVTPWNVVKLRDSIINGAEIHPGATHYLD---KLSTMRLPPNKKMRISIGRKLDTSRG 475
           PER   +NV +L+ +++NG   +PG+ +  D    LS   +P  K+  ++  + LD    
Sbjct: 382 PERAASFNVDRLKKAVVNGP-TYPGSLYLQDGDVMLSLAHMPDEKRYALA-NQLLD---- 435

Query: 476 AIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYA 535
                GK        K+V+RHL DGDVVL+NRQPTLH+PSIMAH  RVL+ E+TLRMHYA
Sbjct: 436 -----GK--------KVVWRHLVDGDVVLMNRQPTLHRPSIMAHKCRVLRKERTLRMHYA 482

Query: 536 NCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAAL 595
           NC +YNADFDGDEMNVHFPQ+  S AE+ +IV  ++ Y+ P+NG P+R L+QDHIV   +
Sbjct: 483 NCKSYNADFDGDEMNVHFPQNYASEAESRHIVMNDSNYLVPTNGKPIRGLVQDHIVIVTV 542

Query: 596 LTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPL 655
           LT KD+F + +++  L+ ++G+S            +R+++ R         P I KP  L
Sbjct: 543 LTMKDSFFSEEDYFTLV-NAGLSD-----------RRIVLDR---------PCIVKPARL 581

Query: 656 WTGKQVITAVLNHI 669
           ++GKQVI+ +L ++
Sbjct: 582 YSGKQVISTILKNL 595



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           CKTC      CPGHFGHI L   V NP+ F+ L+++++  CF C HF+ +  +      K
Sbjct: 59  CKTCNLSFLNCPGHFGHIKLSRIVLNPMFFDSLFSIVRCYCFQCKHFRITNYDRLILFCK 118

Query: 61  LELIIKGDIIAAKSLD 76
             L++ G+   A+ LD
Sbjct: 119 FSLLLNGE--EAEDLD 132


>gi|308229950|gb|ADO24382.1| RNA polymerase II large subunit, partial [Drosophila falleni]
          Length = 1847

 Score =  311 bits (796), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 238/805 (29%), Positives = 369/805 (45%), Gaps = 144/805 (17%)

Query: 252  EKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVME 306
            E++WE    +   I+D +    G   K A      + V+ VPP+  R P+    G +  +
Sbjct: 192  ERVWE----ILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVR-PAVVMFGAAKNQ 246

Query: 307  HPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS- 365
               T  L+ +++AN  L     +    A VI      LQ  V  L D       R M   
Sbjct: 247  DDLTHKLADIIKANNELRKNEASG-AAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 305

Query: 366  -----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE 420
                  I   L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  LT+PE
Sbjct: 306  GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 365

Query: 421  RVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP 480
             VTP+N+ ++++ +  G   +PGA + +                  G ++D        P
Sbjct: 366  LVTPFNIDRMQELVRRGNSQYPGAKYIVR---------------DNGERIDLR----FHP 406

Query: 481  GKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 539
             K SD   + G  V RHL+D D+V+ NRQPTLHK S+M H V+VL    T RM+ +  S 
Sbjct: 407  -KSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWS-TFRMNLSCTSP 464

Query: 540  YNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
            YNADFDGDEMN+H PQ   +RAE  NI     Q + P    P+  ++QD + +   +TK+
Sbjct: 465  YNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKR 524

Query: 600  DTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
            D F+ R++   LL         L ++ GK  Q               P I KP PLWTGK
Sbjct: 525  DVFITREQVMNLLMF-------LPTWDGKMPQ---------------PCILKPRPLWTGK 562

Query: 660  QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
            Q+ + +                  +P +                     + +T+  H D 
Sbjct: 563  QIFSLI------------------IPGNV-------------------NMIRTHSTHPD- 584

Query: 720  SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHT 777
                            E +    K     + K+++   +L+ G++ K         L+H 
Sbjct: 585  ----------------EEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHI 628

Query: 778  VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKR 837
                 G + AG     +  +   +L + G + G+ D +     + +    +  + +  K 
Sbjct: 629  CFLELGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTI----ADPQTYTEIQTAIKKAKD 684

Query: 838  VHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN---KHTSSSVINE 894
              +  ++     E++P              G+     F+ K+   LN     T  S    
Sbjct: 685  DVINVIQKAHNMELEPTP------------GNTLRQTFENKVNRILNDARDKTGGSAKKS 732

Query: 895  LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
            L        T  N +  M  SG+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F 
Sbjct: 733  L--------TEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFI 784

Query: 955  PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
              D+ P + GF+ + +LTGL P E+YFH M GREGL+DTAVKT+ +GY+QR LIK +E +
Sbjct: 785  KDDYGPESRGFVENSYLTGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 844

Query: 1015 KISYDYSVRDADGSIVQFCYGEDGV 1039
             ++YD +VR++ G ++Q  YGEDG+
Sbjct: 845  MVNYDGTVRNSVGQLIQLRYGEDGL 869



 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 62/93 (66%), Gaps = 1/93 (1%)

Query: 1114 ADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGE 1173
            A++F  +  A +  +  ++ +F  + A PGE VG LA+QS+GEP+TQMTLNTFH AG   
Sbjct: 1028 AEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSS 1087

Query: 1174 MNVTLGIPRLQEILTIASKDIKTPVITCPLLVG 1206
             NVTLG+PRL+EI+ I SK  K P +T  L  G
Sbjct: 1088 KNVTLGVPRLKEIINI-SKKPKAPSLTVFLTGG 1119



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 27/50 (54%)

Query: 1  CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
          C+TC      CPGHFGHIDL  PV++         +L+ +CF+C     S
Sbjct: 48 CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS 97


>gi|157741622|gb|ABV69516.1| RNA polymerase II largest subunit, partial [Verrucula granulosaria]
          Length = 999

 Score =  311 bits (796), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 217/677 (32%), Positives = 324/677 (47%), Gaps = 139/677 (20%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  RQ LMGKRV+++ R+VI+ DP L+++E+G+P   A  LTYPE VT +N+ +L
Sbjct: 255  LKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRL 314

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
            +  + NG E HPGA + + +            RI +    DTS+ A+            G
Sbjct: 315  KAFVTNGPEAHPGARYVIRETGE---------RIDLRYHKDTSQIALKT----------G 355

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RHL DGD++L NRQP   +  +M +         T R++ +  + YNADFDGDEMN
Sbjct: 356  WKVERHLMDGDIILFNRQPXXXRVRVMPY--------STFRLNLSVTTPYNADFDGDEMN 407

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E SRAE   +       V P    PL+ ++QD +     + ++D FL+R+E   
Sbjct: 408  LHVPQSEESRAELAQLCMVPLNIVSPQRNGPLKGIVQDTLCGIYKICRRDIFLSREEVMN 467

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            ++                     L       V+P  PAI KP P WTGKQVI+ VL    
Sbjct: 468  IM---------------------LWVPDWDGVIP-QPAIVKPRPRWTGKQVISMVL---- 501

Query: 671  RGRPPF--VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
               PP   +V   GK PQ                                          
Sbjct: 502  ---PPALNLVRIDGKEPQ------------------------------------------ 516

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNT 786
              PGE         +     +  L +    L+ G+ +K        G++HT+   +G  T
Sbjct: 517  -PPGE---------RFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHET 566

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE 846
            A    +    +   +L  +GF+ G+ D +                 ++G    +E ++LE
Sbjct: 567  AMAFFNGAQTVVNYWLLHNGFSIGIGDTV----------------PDVGT---VEKIKLE 607

Query: 847  ---DGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKP 903
                 AE++ I   +  E      G      F+ K+++ LN     +      +E  LK 
Sbjct: 608  VDRKKAEVERITQMAVAEDLEALPGMNVRETFESKVSAALNGARDEA---GTATENSLKD 664

Query: 904  TGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAG 963
               N I  M  +G+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D++  + 
Sbjct: 665  I-NNAIQ-MARAGSKGSTINISQMTAIVGQQSVEGKRIPFGFKYRTLPHFAKDDYSAASK 722

Query: 964  GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
            GF+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD +VR
Sbjct: 723  GFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVR 782

Query: 1024 DADGSIVQFCYGEDGVD 1040
            D+ G+IVQF YGEDG+D
Sbjct: 783  DSRGNIVQFIYGEDGLD 799


>gi|157741620|gb|ABV69515.1| RNA polymerase II largest subunit, partial [Verrucula arnoldaria]
          Length = 999

 Score =  311 bits (796), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 216/680 (31%), Positives = 320/680 (47%), Gaps = 145/680 (21%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  RQ LMGKRV+++ R+VI+ DP L+++E+G+P   A  LTYPE VT +N+ +L
Sbjct: 255  LKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRL 314

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
            +  + NG E HPGA + + +            RI +    DTS+ A+            G
Sbjct: 315  KAFVTNGPEAHPGARYVIRETGE---------RIDLRYHKDTSQIALKT----------G 355

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RHL DGDV+L NRQP   +  +M +         T R++ +  + YNADFDGDEMN
Sbjct: 356  WKVERHLMDGDVILFNRQPXXXRVRVMPY--------STFRLNLSVTTPYNADFDGDEMN 407

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E SRAE   +       V P    PL  ++QD +     + ++D FL+R+E   
Sbjct: 408  LHVPQSEESRAELAQLCMVPLNIVSPQRNAPLMGIVQDTLCGIYKICRRDIFLSREEVMN 467

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            ++                     L       V+P  PAI KP P WTGKQVI+ VL    
Sbjct: 468  IM---------------------LWVPDWDGVIP-QPAIVKPRPRWTGKQVISMVL---- 501

Query: 671  RGRPPF--VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
               PP   +V   GK PQ                                          
Sbjct: 502  ---PPALNLVRIDGKEPQ------------------------------------------ 516

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNT 786
              PGE         +     +  L +    L+ G+ +K        G++HT+   +G  T
Sbjct: 517  -PPGE---------RFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHET 566

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEA 842
            A    +    +   +L  +GF+ G+ D +     ++  +RE        E I +    E 
Sbjct: 567  AMAFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTVEKIKREVDRKKAEVERITQMAVAED 626

Query: 843  LELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSV--INELLSEGL 900
            LE   G  +     +S++  A+ G  D A               T +S+  IN  +    
Sbjct: 627  LEALPGMNVRET-FESKVSAALNGARDEA------------GTATENSLKDINNAIQ--- 670

Query: 901  LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
                       M  +G+KG+ +N  Q+++ +GQQ +EGKR+P     +TLP F   D++ 
Sbjct: 671  -----------MARAGSKGTTINISQMTAIVGQQSVEGKRIPFGFKYRTLPHFAKDDYSA 719

Query: 961  RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
             + GF+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD 
Sbjct: 720  ASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDG 779

Query: 1021 SVRDADGSIVQFCYGEDGVD 1040
            +VRD+ G+IVQF YGEDG+D
Sbjct: 780  TVRDSRGNIVQFIYGEDGLD 799


>gi|268553547|ref|XP_002634760.1| C. briggsae CBR-RPB-1 protein [Caenorhabditis briggsae]
 gi|60393735|sp|P35074.2|RPB1_CAEBR RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
            polymerase II subunit B1; AltName: Full=DNA-directed RNA
            polymerase III largest subunit
          Length = 1853

 Score =  311 bits (796), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 236/770 (30%), Positives = 361/770 (46%), Gaps = 139/770 (18%)

Query: 286  VVLVPPIKFRLPS--KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMN 343
            V+ VPP+  R P+    G +  +   T  LS +++ N  L     N    A V+      
Sbjct: 246  VLPVPPLAVR-PAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANG-AAAHVLTDDVRL 303

Query: 344  LQQSVNVLFDG-------KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            LQ  V  L D            G R + S I Q L+ KEG  R  LMGKRV+++ R+VI+
Sbjct: 304  LQYHVATLVDNCIPGLPTATQKGGRPLKS-IKQRLKGKEGRIRGNLMGKRVDFSARTVIT 362

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
             DP L ++ +G+P   A  LT+PE VTP+NV KL++ +  G   +PGA + + +      
Sbjct: 363  ADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYIIRE------ 416

Query: 457  PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
                  R+ + R    +    +QP         G  V RH++DGD+++ NRQPTLHK S+
Sbjct: 417  ---NGARVDL-RYHPRAADLHLQP---------GYRVERHMKDGDIIVFNRQPTLHKMSM 463

Query: 517  MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
            M H V++L    T RM+ +  S YNADFDGDEMN+H PQ   +RAE   I     Q + P
Sbjct: 464  MGHRVKILPW-STFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITP 522

Query: 577  SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
                P+  ++QD + +  ++TK+D F++      LL         L ++ GK  Q     
Sbjct: 523  QANKPVMGIVQDTLCAVRMMTKRDIFIDWPFMMDLLMY-------LPTWDGKVPQ----- 570

Query: 637  RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
                      PAI KP+PLWTGKQV + +                  +P +         
Sbjct: 571  ----------PAILKPKPLWTGKQVFSLI------------------IPGNV-------- 594

Query: 697  KQSDRKKNDKGKLSKTNKMHKDK--SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLI 754
                        + +T+  H D   SG  K +  G                   + K+LI
Sbjct: 595  -----------NVLRTHSTHPDSEDSGPYKWISPG-------------------DTKVLI 624

Query: 755  YKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
               +L+ G++           L+H V    G   A    S +  +   +L   G T G+ 
Sbjct: 625  EHGELLSGIVCSKTVGKSAGNLLHVVALELGHEIAANFYSHIQTVINAWLLREGHTIGIG 684

Query: 813  DLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
            D +  +    + +N +  +    K+  ++ +E     +++P              G+   
Sbjct: 685  DTIADQSTYLDIQNTIRKA----KQDVVDVIEKAHNDDLEPTP------------GNTLR 728

Query: 873  AYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
              F+ K+   LN  +  + S   + LSE        N    M  SG+KGSK+N  Q+ + 
Sbjct: 729  QTFENKVNQILNDARDRTGSSAQKSLSE-------FNNFKSMVVSGSKGSKINISQVIAC 781

Query: 931  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
            +GQQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL P E++FH M GREGL
Sbjct: 782  VGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGL 841

Query: 991  VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            +DTAVKT+ +GY+QR LIK +E + ++YD +VR++   +VQ  YGEDG+D
Sbjct: 842  IDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLD 891



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/74 (58%), Positives = 57/74 (77%), Gaps = 1/74 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
             L  ++ +F  ++AQPGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI
Sbjct: 1062 LLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEI 1121

Query: 1187 LTIASKDIKTPVIT 1200
            + + SK +KTP +T
Sbjct: 1122 INV-SKQLKTPSLT 1134



 Score = 47.4 bits (111), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 25/44 (56%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C TC      CPGHFGH++L  PV++         +L+ +CF+C
Sbjct: 66  CMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKSLKILRCVCFYC 109


>gi|340722779|ref|XP_003399779.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
            terrestris]
 gi|350424170|ref|XP_003493710.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
            impatiens]
          Length = 1902

 Score =  311 bits (796), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 237/801 (29%), Positives = 365/801 (45%), Gaps = 140/801 (17%)

Query: 256  ENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVMEHPQT 310
            E  +E+   I+D +    G   K A      + V+ VPP+  R P+    G +  +   T
Sbjct: 211  ERAWEILKHITDEESFILGMDPKFARPDWMVVTVLPVPPLSVR-PAVIMYGSAKNQDDLT 269

Query: 311  VLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS----- 365
              L+ +++AN  L          A VI      LQ  V  L D       R M       
Sbjct: 270  HKLADIIKANNELIRNE-QAGAAAHVISENIKMLQFHVATLVDNDMPGMPRAMQKSGKPL 328

Query: 366  -GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTP 424
              I   L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  LT+PE VTP
Sbjct: 329  KAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTP 388

Query: 425  WNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDS 484
            +N+ K+++ +  G   +PGA + +                  G ++D        P K S
Sbjct: 389  FNIDKMQELVRRGNSQYPGAKYIVR---------------DNGERIDLR----FHP-KPS 428

Query: 485  DNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNAD 543
            D   + G  V RH++DGD+V+ NRQPTLHK S+M H V+VL    T RM+ +  S YNAD
Sbjct: 429  DLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPW-STFRMNLSCTSPYNAD 487

Query: 544  FDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFL 603
            FDGDEMN+H PQ   +RAE  NI     Q + P    P+  ++QD + +   +TK+D F+
Sbjct: 488  FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 547

Query: 604  NRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVIT 663
             +++   +L         L S+ GK  Q               P I KP+PLWTGKQ+ +
Sbjct: 548  EKEQMMNILMF-------LPSWNGKMPQ---------------PCILKPKPLWTGKQIFS 585

Query: 664  AVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKK 723
             +                  +P +                     + +T+  H D     
Sbjct: 586  LI------------------IPGNV-------------------NMIRTHSTHPD----- 603

Query: 724  KEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQEL 781
                        E +    K     + K+++   +LV G++ K         L+H     
Sbjct: 604  ------------EEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLE 651

Query: 782  YGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLE 841
             G    G     +  +   +L + G + G+ D +       E +  +  ++E      +E
Sbjct: 652  LGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKED----VIE 707

Query: 842  ALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN---KHTSSSVINELLSE 898
             ++     E++P              G+     F+ ++   LN     T  S    L   
Sbjct: 708  VIQKAHNMELEPTP------------GNTLRQTFENQVNRILNDARDKTGGSAKKSL--- 752

Query: 899  GLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDW 958
                 T  N +  M  SG+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F   D+
Sbjct: 753  -----TEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDY 807

Query: 959  APRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISY 1018
             P + GF+ + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR LIK +E + + Y
Sbjct: 808  GPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHY 867

Query: 1019 DYSVRDADGSIVQFCYGEDGV 1039
            D +VR++ G ++Q  YGEDG+
Sbjct: 868  DGTVRNSVGQLIQLRYGEDGL 888



 Score = 80.1 bits (196), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 1/87 (1%)

Query: 1114 ADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGE 1173
            +++F  +  A +  +  ++ +F  +   PGE VG LA+QS+GEP+TQMTLNTFH AG   
Sbjct: 1047 SEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSS 1106

Query: 1174 MNVTLGIPRLQEILTIASKDIKTPVIT 1200
             NVTLG+PRL+EI+ I SK  K P +T
Sbjct: 1107 KNVTLGVPRLKEIINI-SKKPKAPSLT 1132



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 27/50 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
           C+TC      CPGHFGHIDL  PV++         +L+ +CF+C     S
Sbjct: 66  CQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVS 115


>gi|85000327|ref|XP_954882.1| DNA-directed RNA polymerase II largest subunit [Theileria annulata
            strain Ankara]
 gi|65303028|emb|CAI75406.1| DNA-directed RNA polymerase II largest subunit, putative [Theileria
            annulata]
          Length = 1678

 Score =  310 bits (795), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 243/810 (30%), Positives = 368/810 (45%), Gaps = 137/810 (16%)

Query: 241  PLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKG 300
            PL P +   ++  +   + +   F+ +  Q  +          L V+ VPP   R   + 
Sbjct: 203  PLTPEEAFKVLRGITLEDMKCLGFVPERSQPCW--------LILQVLPVPPPAVRPYVQY 254

Query: 301  GDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD----GKN 356
            G    E   T+ L  VL+ N  L   +  +     +I      LQ  +  LFD    G  
Sbjct: 255  GSDRSEDDLTLKLLDVLKTN-NLIKRHDKRATAPHIIQEMCQLLQFHITTLFDNDIPGMP 313

Query: 357  AAGQRDM--ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFAL 414
             A  R       I   L+ KEG  R  LMGKRV+++ R+VI+ DP + ++ IG+P   A+
Sbjct: 314  IASTRSKKPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNIPIDTIGVPKSIAM 373

Query: 415  RLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSR 474
             LT+ E V   N   LR  +  G    PGA + +                    + D +R
Sbjct: 374  TLTFCETVNSLNYESLRKKVETGPHDWPGAKYII--------------------RDDGTR 413

Query: 475  GAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH 533
              +    K S+ + E G  V RH+QDGD +L NRQP+LHK SIM H  ++L    T R++
Sbjct: 414  FDLRHVKKSSELQLEYGYKVERHMQDGDYILFNRQPSLHKMSIMGHRAKILP-YSTFRLN 472

Query: 534  YANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSA 593
             +  + YNADFDGDEMN+H  Q   +RAE  +++    Q V P    P+  ++QD +++ 
Sbjct: 473  LSVTTPYNADFDGDEMNLHLVQTHETRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSLLAV 532

Query: 594  ALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPE 653
            +  TK+DTFL RDE   LL         +  + GK  Q               PAI+ P+
Sbjct: 533  SKFTKRDTFLTRDELMSLLI-------WIPYWDGKLPQ---------------PAIFFPK 570

Query: 654  PLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTN 713
             LWTGKQVI+ +L                          FN   QS    N       T 
Sbjct: 571  NLWTGKQVISVLLT-------------------------FN---QSQGITNINLIRDGTI 602

Query: 714  KMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--AD 771
            K+ KD                       +    +++ +++I KN+ + G+I K     + 
Sbjct: 603  KLDKD-----------------------NLNCSINDSRVIIRKNEHLSGIICKKTVGCSS 639

Query: 772  YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGS 831
              L+H +    G       L+ L ++   +    GFT    D+   +    +    L  S
Sbjct: 640  GSLIHILWHEAGPEKCRDFLTTLQKVVNNWFLQIGFTVSCSDIYCSESTLNKVYRILDKS 699

Query: 832  EEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN--KHTSS 889
            +   K V    L+ + G      KLK +        G +    F+ ++  +LN  +  S 
Sbjct: 700  K---KEVQKLVLQAQKG------KLKCQ-------PGKSLFESFEARVNKELNDAREQSG 743

Query: 890  SVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKT 949
            SV+   L+         N I  M  SG+KGS +N  QI + +GQQ +EGKR+P     ++
Sbjct: 744  SVVASSLNL-------TNNILSMVNSGSKGSTINISQIIACVGQQNVEGKRIPFGFRDRS 796

Query: 950  LPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK 1009
            LP F   D+ P + GF+ + +L+GL PQE +FH M GREG++DTA KTS +GY+QR LIK
Sbjct: 797  LPHFIKHDYGPESRGFVSNSYLSGLTPQEMFFHAMGGREGIIDTACKTSETGYVQRRLIK 856

Query: 1010 NLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
             +E + + YD + R+ +G I+QF YGEDG+
Sbjct: 857  AMEDVMVQYDRTARNGNGEILQFLYGEDGM 886



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 54/70 (77%), Gaps = 1/70 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            V+  F  ++A PGE VG +A+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+E++ + 
Sbjct: 1064 VERCFFRAIANPGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVV 1123

Query: 1191 SKDIKTPVIT 1200
            + +++TP +T
Sbjct: 1124 T-NVRTPSLT 1132



 Score = 47.4 bits (111), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TC      CPGHFGHI L  P+Y+      +  +L+ +CF C  F  ++ +      +
Sbjct: 70  CLTCSMDLKYCPGHFGHIVLAKPMYHYGFMMTVLKILRCVCFNCSKFLLNKED-----PR 124

Query: 61  LELIIK 66
           ++LI+K
Sbjct: 125 VQLILK 130


>gi|324120516|dbj|BAJ78649.1| RNA polymerase II largest subunit [Thermobia domestica]
          Length = 1699

 Score =  310 bits (795), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 210/684 (30%), Positives = 326/684 (47%), Gaps = 127/684 (18%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  LT+PE VTP+N+ K+
Sbjct: 337  LKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSVAQNLTFPEIVTPFNIDKM 396

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE- 489
            +D +  G   +PGA + +                  G ++D        P K SD   + 
Sbjct: 397  QDLVRRGNSQYPGAKYIVR---------------DNGERIDLR----FHP-KPSDLHLQC 436

Query: 490  GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
            G  V RH++DGD+V+ NRQPTLHK S+M H V+VL    T RM+ +  S YNADFDGDEM
Sbjct: 437  GYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPW-STFRMNLSVTSPYNADFDGDEM 495

Query: 550  NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
            N+H PQ   +RAE  NI     Q + P +  P+  ++QD + +   +TK+D FL +++  
Sbjct: 496  NLHVPQSMETRAEVENIHVTPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLEKEQMM 555

Query: 610  QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
             LL         L  + GK  Q               P+I KP+PLWTGKQV + +    
Sbjct: 556  NLLMH-------LPIWDGKMPQ---------------PSILKPKPLWTGKQVFSLI---- 589

Query: 670  TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
                          +P +   TR ++    D                 +  G  K +  G
Sbjct: 590  --------------IPGNVNVTRTHSTHPDD-----------------EDDGPYKWISPG 618

Query: 730  KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTA 787
                               + K+++   +L+ G++ K         L+H      G    
Sbjct: 619  -------------------DTKVMVEHGELIMGILCKKTLGSSAGSLLHICMLELGHEVC 659

Query: 788  GTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELED 847
            G     +  +   +L + G + G+ D +     + +    +  + +  K   +E ++   
Sbjct: 660  GRFYGNIQTVVNNWLLLEGHSIGIGDTI----ADPQTYTEIQRAIKKAKEDVIEVIQKAH 715

Query: 848  GAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN---KHTSSSVINELLSEGLLKPT 904
              E++P              G+     F+ ++   LN     T  S    L        T
Sbjct: 716  NMELEPTP------------GNTLRQTFENQVNRILNDARDKTGGSAKKSL--------T 755

Query: 905  GKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGG 964
              N +  M  SG+KGS +N  Q+ + +GQQ +EGKR+P     +TLP F   D+ P + G
Sbjct: 756  EYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRG 815

Query: 965  FIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD 1024
            F+ + +L GL P E++FH M GREGL+DTAVKT+ +GY+QR LIK +E + ++YD +VR+
Sbjct: 816  FVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRN 875

Query: 1025 ADGSIVQFCYGEDGVDVHQTSFIS 1048
            + G ++Q  YGEDG+      F S
Sbjct: 876  SVGQLIQLRYGEDGLCGETVEFQS 899



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 1/70 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F  +  QPGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ I 
Sbjct: 1066 IESRFQQAQCQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI- 1124

Query: 1191 SKDIKTPVIT 1200
            SK  K P +T
Sbjct: 1125 SKRPKAPSLT 1134



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 27/50 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
           C+TC      CPGHFGHIDL  PVY+         +L+ +CF+C     S
Sbjct: 67  CQTCAGNMTECPGHFGHIDLAKPVYHIGFITKTIKILRCVCFYCSKLLVS 116


>gi|71665443|ref|XP_819691.1| DNA-directed RNA polymerase III largest subunit [Trypanosoma cruzi
            strain CL Brener]
 gi|70885004|gb|EAN97840.1| DNA-directed RNA polymerase III largest subunit, putative
            [Trypanosoma cruzi]
          Length = 1553

 Score =  310 bits (795), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 235/778 (30%), Positives = 355/778 (45%), Gaps = 144/778 (18%)

Query: 282  FFLGVVLVPPIKFR-LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
              +  +LVPP+  R   S G  ++ +   T   + +L ++  L +  ++    A      
Sbjct: 258  LLVTTLLVPPVSVRPRGSSGTANIRDDDLTGQYNDILISSDTLQDGSID----ASKYTET 313

Query: 341  WMNLQQSVNVLFDGKNAAGQRDMASG----ICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
            W  LQ     L D         M +       Q L+ K G FR  L GKRV+++ RSVIS
Sbjct: 314  WEMLQMRAARLIDSALPGFPPHMRTADVKSYAQRLKGKHGRFRGNLSGKRVDFSGRSVIS 373

Query: 397  PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATH-YLDKLSTMR 455
            PDP L V+E+ +P   A  LTYP+RV   N+  +R  + NG  +HPGA   YL +  + +
Sbjct: 374  PDPNLDVDELAVPLRVARVLTYPQRVFKSNLELMRRLVRNGPNVHPGAVAVYLAQEGSKK 433

Query: 456  LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
               +++ R S+  +L                   G +V RH+ +GDVVL NRQP+LH+ S
Sbjct: 434  SLNHERDRESLSARLSI-----------------GDVVERHVMNGDVVLFNRQPSLHRIS 476

Query: 516  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
            +MAH  RVL   +T R +   C+ YNADFDGDEMNVH  Q E +RAEA+ ++      + 
Sbjct: 477  MMAHRARVLPF-RTFRFNECCCAPYNADFDGDEMNVHLVQTEEARAEAFELMLTAKNIIN 535

Query: 576  PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 635
              NG+P+ +  QD +V+A L+T +D F +R +       S + S  LG  T         
Sbjct: 536  AKNGEPIIACTQDFLVAAYLVTSRDVFFDRSQM------SWMVSHWLGPVT--------- 580

Query: 636  SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
                Q  LP+ P I KP  LWTGKQ    V   I R  P   V    +    F+      
Sbjct: 581  ----QFRLPI-PTILKPTELWTGKQ----VFELILRPSPEVNVLLNLEAATKFYT----- 626

Query: 696  DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
                                   K G+     EG                      +   
Sbjct: 627  -----------------------KKGRHDCAAEGY---------------------VAFL 642

Query: 756  KNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
             +  + G +DK      A  GL   +  L G      ++S +++  + +L  +GF+ G+ 
Sbjct: 643  DSRFISGRLDKKLLGGGAKDGLFARLHTLSGGGYTARIMSRIAQFTSRYLTNYGFSLGLG 702

Query: 813  DLL---ILKDKERE-------RKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEK 862
            D+    +L +++           + L  S + G+   L  L +    E    +L +E+ K
Sbjct: 703  DVAPTPLLNEQKAAVLARSFATCDSLIESAKTGRMEPLPGLTVRQSLEA---RLNAELSK 759

Query: 863  AMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV 922
                 G AAV    +   + L                           +M  SG+KGS +
Sbjct: 760  VRDECGTAAVETLSVDTNTPL---------------------------MMVQSGSKGSAL 792

Query: 923  NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
            N  Q+ + +GQQ + GKR+      ++LP F+ ++ AP A GF+ + F +GL P E++FH
Sbjct: 793  NIAQMMACVGQQTVSGKRILNAFQDRSLPHFYRFEEAPSARGFVANSFYSGLTPTEFFFH 852

Query: 983  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
             MAGREGLVDTAVKT+ +GY+ R L+K +E L + YD + R+  G +VQF +GEDG+D
Sbjct: 853  TMAGREGLVDTAVKTAETGYIYRRLMKAMENLSVRYDGTARNTRGDVVQFRFGEDGLD 910



 Score = 89.7 bits (221), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 55/77 (71%), Gaps = 1/77 (1%)

Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
            FL     K++L   +PG P G +A+QSVGEPSTQMTL TFH AG   M++T G+PRL EI
Sbjct: 1132 FLAQCASKYILKACEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQGVPRLVEI 1191

Query: 1187 LTIASKDIKTPVITCPL 1203
            +  A+++I TPV+T P+
Sbjct: 1192 IN-ANRNIATPVVTAPV 1207



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 31/61 (50%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
           C TCG R   C GH GHIDL  PV++   F  +  + + IC  C H      E+E   R+
Sbjct: 74  CATCGLRSIDCVGHPGHIDLETPVFHLGFFTTILRICRTICKRCSHLLLDDAEIEYYKRR 133

Query: 61  L 61
           L
Sbjct: 134 L 134


>gi|410906965|ref|XP_003966962.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like, partial
            [Takifugu rubripes]
          Length = 1628

 Score =  310 bits (795), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 210/693 (30%), Positives = 327/693 (47%), Gaps = 141/693 (20%)

Query: 367  ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
            I Q L+ KEG  R  LMGKRV+++ R+VI+PDP L ++++G+P   A  +T+PE VTP+N
Sbjct: 337  IKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFN 396

Query: 427  VVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGK 482
            + +L++ +  G   +PGA + +    D++     P    + + IG K++           
Sbjct: 397  IDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVE----------- 445

Query: 483  DSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNA 542
                        RH+ DGD+V+ NRQPTLHK S+M H VR+L    T R++ +  + YNA
Sbjct: 446  ------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-STFRLNLSVTTPYNA 492

Query: 543  DFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTF 602
            DFDGDEMN+H PQ   +RAE   +       V P +  P+  ++QD + +    TK+D F
Sbjct: 493  DFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVF 552

Query: 603  LNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVI 662
            L+R E   LL         L ++ GK  Q               PAI KP  LWTGKQ+ 
Sbjct: 553  LDRGEVMNLLMF-------LSTWDGKMPQ---------------PAILKPRALWTGKQIF 590

Query: 663  TAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKD--K 719
            + ++  HI                                       + +T+  H D   
Sbjct: 591  SLIIPGHI--------------------------------------NVIRTHSTHPDDED 612

Query: 720  SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHT 777
            SG  K +  G                   + K+++   +L+ G++ K         LVH 
Sbjct: 613  SGPYKHISPG-------------------DTKVIVENGELIMGILCKKSLGTSAGSLVHI 653

Query: 778  VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEI--G 835
                 G +      S +  +   +L + G + G+ D +       + K +L     I   
Sbjct: 654  SYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGDSIA------DAKTYLDIQNTIKKA 707

Query: 836  KRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN--KHTSSSVIN 893
            K+  +E +E     E++P              G+     F+ ++   LN  +  + S   
Sbjct: 708  KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILNDARDKTGSSAQ 755

Query: 894  ELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSF 953
            + LSE        N    M  +G+KGSK+N  Q+ + +GQQ +EGKR+P     +TLP F
Sbjct: 756  KSLSE-------YNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHF 808

Query: 954  HPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLEC 1013
               D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY+QR LIK++E 
Sbjct: 809  IKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMES 868

Query: 1014 LKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
            + + YD +VR++   +VQ  YGEDG+      F
Sbjct: 869  VMVKYDGTVRNSINQVVQLRYGEDGLAGENVEF 901



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
            +++  ++F  +  A    L  ++ KF  S+A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1049 SKRMTEEFRLSTEAFDWLLGEIETKFNHSIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1108

Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
            G    NVTLG+PRL+E++ I SK  KTP +T  LL
Sbjct: 1109 GVSAKNVTLGVPRLKELINI-SKRPKTPSLTVFLL 1142



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
           C+TC      CPGHFGHI+L  PV++      +  +L+ +CFFC
Sbjct: 69  CQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFC 112


>gi|83320426|gb|ABC02840.1| RNA polymerase II largest subunit, partial [Hyaloraphidium curvatum]
          Length = 1002

 Score =  310 bits (794), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 241/813 (29%), Positives = 372/813 (45%), Gaps = 171/813 (21%)

Query: 260  ELCSFISDM--QQQGFGKKAGHSIFFLGVVL-VPPIKFR----LPSKGGDSVMEHPQTVL 312
            E+   ISD   +  G   +     + L  VL VPP + R    +    G    +   T  
Sbjct: 129  EVFRVISDQDCRDMGLSPEFARPEWMLVTVLPVPPPQVRPSVSMDGASGGMRSQDDLTFK 188

Query: 313  LSKVLQANIYLANAYVNQPDNAKVIVARWMN--LQQSVNVLFDGKNAAG--QRDMASG-- 366
            L  +L+ANI L     +  +N+   + R     LQ  V  + D  N +G  Q    SG  
Sbjct: 189  LGDILKANIALKR---HDAENSPAHITREFEEILQYHVATMVD-NNISGMPQAMQKSGRP 244

Query: 367  ---ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVT 423
               I Q L+ KEG  R  LMGKRV+++ R+VI+ DP ++++E+G+P   A  LT+PE VT
Sbjct: 245  IKSIRQRLKGKEGRIRGNLMGKRVDFSSRTVITGDPNISIDEVGVPRSIARTLTFPEIVT 304

Query: 424  PWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQ 479
            P NV +L++ + NGA  HPGA + +    D++S   +P      + IG   DT       
Sbjct: 305  PHNVARLQELVRNGALEHPGANYIVRQSGDRISLKFVPQAGDQPLQIG---DT------- 354

Query: 480  PGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 539
                         V RHLQDGD V+ NRQP+LHK S+M H V+++    T R++ +  + 
Sbjct: 355  -------------VERHLQDGDYVIFNRQPSLHKMSMMGHRVKIMPFS-TFRLNLSVTTP 400

Query: 540  YNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
            YNADFDGDEMN+H PQ   +RAE   I+    Q + P    P+  ++QD        T +
Sbjct: 401  YNADFDGDEMNLHAPQSYETRAEIKEIMMVPRQIISPQANKPVMGIVQDTFCGIRKFTLR 460

Query: 600  DTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
            D  + RD    +          +  + G+P                 PAI KP+PLWT  
Sbjct: 461  DNMMTRDMVMNICM-------WIPDWDGQPPP---------------PAILKPQPLWT-- 496

Query: 660  QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD-KQSDRKKNDKGKLSKTNKMHKD 718
                                 G +L      +R N   K S    +++  +S        
Sbjct: 497  ---------------------GKQLMSMVIPSRINVTGKHSTHPDDERDNIS-------- 527

Query: 719  KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVH 776
                        PG+ +                ++I    ++ G++ K    +   G++H
Sbjct: 528  ------------PGDTQ----------------VVIEDGVVLAGILSKRTVGNSAGGIIH 559

Query: 777  TVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGK 836
             +   YG   A    +   R+   +L  +GF+ G+ D +         K  +H   +I K
Sbjct: 560  VIMNEYGPEMAKKFFNGTQRVVNYWLLQNGFSIGIGDTV-------ADKATMHQINQILK 612

Query: 837  RVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELL 896
            R        ED  E      ++++E                       + T  SV+N++L
Sbjct: 613  RAK------EDVGETIARAQQNQLEP----------------QPGMTIRETFESVVNKIL 650

Query: 897  SEGLLKPTGK---------NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSG 947
            ++   +  GK         N    M  +G+KGS++N  Q+++ +GQQ +EGKR+P     
Sbjct: 651  NKAR-EDAGKAATKSLAPFNNAKQMVDAGSKGSEINISQMAACVGQQNVEGKRIPFGFRL 709

Query: 948  KTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL 1007
            +TLP F   D +P + GF+ + +L GL PQE++FH M GREGL+DTAVKT+ +GY+QR L
Sbjct: 710  RTLPHFTKDDQSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRL 769

Query: 1008 IKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
            +K LE + + YD +VR++ G ++QF YGEDG+D
Sbjct: 770  VKALEDVMVKYDGTVRNSLGHVIQFAYGEDGMD 802


>gi|209881813|ref|XP_002142344.1| DNA-directed RNA polymerase III largest subunit [Cryptosporidium
            muris RN66]
 gi|209557950|gb|EEA07995.1| DNA-directed RNA polymerase III largest subunit, putative
            [Cryptosporidium muris RN66]
          Length = 1803

 Score =  310 bits (794), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 243/781 (31%), Positives = 376/781 (48%), Gaps = 143/781 (18%)

Query: 282  FFLGVVLVPPIKFRLPSKGGDS-VMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
              L  + VPP   R     G++   E   TV+LS++   N  +  + +        ++  
Sbjct: 245  LLLSRLPVPPNCIRPSVTMGEAGSNEDDLTVILSEITDLN-NMIKSQMKSGFQTLQLLGN 303

Query: 341  WMNLQQSVNVLFDGKNAAGQRDMAS--------GICQLLEKKEGLFRQKLMGKRVNYACR 392
            W  LQ     L + +     + +AS        GICQ L+ KEG FR  L GKRV+++ R
Sbjct: 304  WEFLQLQCTRLINAEAPGVNQLLASKNIPKAGRGICQRLKGKEGRFRGNLSGKRVDFSGR 363

Query: 393  SVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLS 452
            +VISPDP +AV+E+ +P   A  +TYPERV   N+ +LRD+++NG  I PGA  Y+ K +
Sbjct: 364  TVISPDPNVAVDEVVVPVVIARIMTYPERVNSHNIERLRDAVLNGHNIWPGAC-YVYKTN 422

Query: 453  TMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLH 512
              +      +R +  R++ + R  I            G +V RH+  GD VL NRQP+LH
Sbjct: 423  GSK----SSLRYA-NRRIVSERLEI------------GDVVERHMITGDSVLFNRQPSLH 465

Query: 513  KPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQ 572
            + SIM+H V V+   +T R +   C+ YNADFDGDEMN+H PQ+E++RAEA  ++   + 
Sbjct: 466  RLSIMSHRVVVMPW-RTFRFNECACAPYNADFDGDEMNLHMPQNELARAEAKYLMGLVHN 524

Query: 573  YVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQR 632
             V P NG+PL +  QD ++   LLT +D FL RD+F Q  Y    +   +          
Sbjct: 525  LVTPRNGEPLVAATQDFLLGIYLLTSRDVFLTRDQFSQ--YCCYFTDGCIPV-------- 574

Query: 633  VLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTR 692
                    E+ P  P+I KP  LWTGKQV   ++      RP                  
Sbjct: 575  --------ELPP--PSILKPIELWTGKQVFNVLI------RP------------------ 600

Query: 693  FNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL 752
                                     + S ++  +V  +  E     K   K+   +E  +
Sbjct: 601  -------------------------NPSERQHIIVNFELKERDYDTKLDLKDLCPNEGFV 635

Query: 753  LIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
            ++  ++L+ G + K     +  GL   +     +  +  ++  ++R  + +L   G T G
Sbjct: 636  IVRHSELLAGAVGKKVLGGSKEGLFFHILRENSNEKSAEVMGRVARFVSRYLAQKGMTIG 695

Query: 811  VDDLL-----------ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSE 859
            +DD+            +L+D  R+ +  +  + E+GK +      LED  E+   K+  E
Sbjct: 696  IDDVTPNEGLLSAKSKLLEDGYRKIQEEI-TTFELGKMIPHPGCTLEDTLEVKVKKILDE 754

Query: 860  IEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKG 919
            I        DA  A            ++S    N+ L              LM  SGAKG
Sbjct: 755  IR------NDAGKA-----------SYSSLPFSNKPL--------------LMYLSGAKG 783

Query: 920  SKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEY 979
              +N  Q+ + +GQQ + G+R+    + +TLP F       R+ GF+ + F +GL+P E+
Sbjct: 784  QLINIAQMVACVGQQNVAGQRIQNGFTQRTLPHFKINCVDGRSRGFVANSFFSGLQPDEF 843

Query: 980  YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            +FH M+GREGLVDTAVKT+ +GY+QR LIK LE L + YD +VR +DG I++F YG+DG+
Sbjct: 844  FFHTMSGREGLVDTAVKTAETGYMQRRLIKALEDLCVKYDQTVRSSDGQIIEFIYGDDGL 903

Query: 1040 D 1040
            +
Sbjct: 904  N 904



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 58/78 (74%), Gaps = 1/78 (1%)

Query: 1126 DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1185
            +F+ L   K++ ++ QPG+ VG +A+QS+GEP TQMTL TFH AG   MNVTLG+PR++E
Sbjct: 1393 EFISLCWLKYMKAIVQPGDAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKE 1452

Query: 1186 ILTIASKDIKTPVITCPL 1203
            I+  A+K I TP+I  PL
Sbjct: 1453 IINAATK-ILTPIIQAPL 1469


>gi|324120518|dbj|BAJ78650.1| RNA polymerase II largest subunit [Isolepisma japonica]
          Length = 1775

 Score =  310 bits (794), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 222/729 (30%), Positives = 340/729 (46%), Gaps = 137/729 (18%)

Query: 334  AKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS------GICQLLEKKEGLFRQKLMGKRV 387
            A VI      LQ  V  L D       + M         I   L+ KEG  R  LMGKRV
Sbjct: 294  AHVIAENIKMLQFHVATLVDNDMPGMPKAMQKSGKPIKAIKNRLKGKEGRIRGNLMGKRV 353

Query: 388  NYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHY 447
            +++ R+VI+PDP L ++++G+P   A  LT+PE VTP+N+ K++D +  G   +PGA + 
Sbjct: 354  DFSARTVITPDPNLRIDQVGVPRSVAQNLTFPEIVTPFNIDKMQDLVRRGNSQYPGAKYI 413

Query: 448  LDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVN 506
            +                  G ++D        P K SD   + G  V RH++DGD+V+ N
Sbjct: 414  VR---------------DNGERIDLR----FHP-KPSDLHLQCGYKVERHIRDGDLVIFN 453

Query: 507  RQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNI 566
            RQPTLHK S+M H V+VL    T RM+ +  S YNADFDGDEMN+H PQ   +RAE  NI
Sbjct: 454  RQPTLHKMSMMGHRVKVLPW-STFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENI 512

Query: 567  VNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFT 626
                 Q + P +  P+  ++QD + +   +TK+D FL +++   +L         L  + 
Sbjct: 513  HVTPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNILMH-------LPIWD 565

Query: 627  GKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQ 686
            GK  Q               P+I KP+PLWTGKQV + +                  +P 
Sbjct: 566  GKMPQ---------------PSILKPKPLWTGKQVFSLI------------------IPG 592

Query: 687  DFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKS--GKKKEVVEGKPGEEKEAEKNKSKE 744
            +                     + +T+  H D+   G  K +    PG+ K         
Sbjct: 593  NV-------------------NVIRTHSTHPDEEDDGPYKWI---SPGDTK--------- 621

Query: 745  KELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFL 802
                   +++   +L+ G++ K      G  L+H      G    G     +  +   +L
Sbjct: 622  -------VMVEHGELIMGILCKKTLGSSGGSLLHICMLELGHEVCGRFYGNIQTVINNWL 674

Query: 803  QMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEK 862
             + G + G+ D +       E +  +  ++E      +E ++     E++P         
Sbjct: 675  LLEGHSIGIGDTIADPQTYLEIQKAIKKAKE----DVIEVIQKAHNMELEPTP------- 723

Query: 863  AMRGGGDAAVAYFDMKMTSQLN---KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKG 919
                 G+     F+ ++   LN     T  S    L        T  N +  M  SG+KG
Sbjct: 724  -----GNTLRQTFENQVNRILNDARDKTGGSAKKSL--------TEYNNLKAMVVSGSKG 770

Query: 920  SKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEY 979
            S +N  Q+ + +GQQ +EGKR+P     +TLP F   D+ P + GF+ + +L GL P E+
Sbjct: 771  SNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF 830

Query: 980  YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
            +FH M GREGL+DTAVKT+ +GY+QR LIK +E + ++YD +VR++ G ++Q  YGEDG+
Sbjct: 831  FFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGL 890

Query: 1040 DVHQTSFIS 1048
                  F S
Sbjct: 891  CGETVEFQS 899



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 1/70 (1%)

Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
            ++ +F  +  QPGE VG LA+QS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+ I 
Sbjct: 1066 IEARFQQAQVQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI- 1124

Query: 1191 SKDIKTPVIT 1200
            SK  K P +T
Sbjct: 1125 SKRPKAPSLT 1134



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 27/50 (54%)

Query: 1   CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
           C+TC      CPGHFGHIDL  PVY+         +L+ +CF+C     S
Sbjct: 67  CQTCAGNMTECPGHFGHIDLAKPVYHIGFITKTIKILRCVCFYCSKLLVS 116


>gi|157741628|gb|ABV69519.1| RNA polymerase II largest subunit, partial [Verrucula inconnexaria]
          Length = 999

 Score =  310 bits (794), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 218/677 (32%), Positives = 323/677 (47%), Gaps = 139/677 (20%)

Query: 371  LEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKL 430
            L+ KEG  RQ LMGKRV+++ R+VI+ DP L+++E+G+P   A  LTYPE VT +N+ +L
Sbjct: 255  LKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRL 314

Query: 431  RDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG 490
            +  + NG E HPGA + + +            RI +    DTS+ A+            G
Sbjct: 315  KAFVTNGPEAHPGARYVIRETGE---------RIDLRYHKDTSQIALKT----------G 355

Query: 491  KMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMN 550
              V RHL DGDV+L NRQP   +  +M +         T R++ +  + YNADFDGDEMN
Sbjct: 356  WKVERHLMDGDVILFNRQPXXXRVRVMPY--------STFRLNLSVTTPYNADFDGDEMN 407

Query: 551  VHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQ 610
            +H PQ E SRAE   +       V P    PL  ++QD +     + ++D FL+R+E   
Sbjct: 408  LHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLSREEVMN 467

Query: 611  LLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHIT 670
            ++                     L       V+P  PAI KP P WTGKQVI+ VL    
Sbjct: 468  IM---------------------LWVPDWDGVIP-QPAIVKPRPRWTGKQVISMVL---- 501

Query: 671  RGRPPF--VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
               PP   +V   GK PQ                                          
Sbjct: 502  ---PPALNLVRIDGKEPQ------------------------------------------ 516

Query: 729  GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNT 786
              PGE         +     +  L +    L+ G+ +K        G++HT+   +G  T
Sbjct: 517  -PPGE---------RFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHET 566

Query: 787  AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE 846
            A    +    +   +L  +GF+ G+ D +                 ++G    +E ++LE
Sbjct: 567  AMAFFNGAQTVVNYWLLHNGFSIGIGDTV----------------PDVGT---VEKIKLE 607

Query: 847  ---DGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKP 903
                 AE++ I   +  E      G      F+ K+++ LN     +      +E  LK 
Sbjct: 608  VDRKKAEVERITQMAVAEDLEALPGMNVREAFESKVSAALNGARDEA---GTATENSLKD 664

Query: 904  TGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAG 963
               N I  M  +G+KGS +N  Q+++ +GQQ +EGKR+P     +TLP F   D++  + 
Sbjct: 665  I-NNAIQ-MARAGSKGSTINISQMTAIVGQQSVEGKRIPFGFKYRTLPHFAKDDYSAASK 722

Query: 964  GFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVR 1023
            GF+ + +L GL P E++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD +VR
Sbjct: 723  GFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVR 782

Query: 1024 DADGSIVQFCYGEDGVD 1040
            D+ G+IVQF YGEDG+D
Sbjct: 783  DSRGNIVQFIYGEDGLD 799


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.318    0.135    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,490,452,963
Number of Sequences: 23463169
Number of extensions: 862112272
Number of successful extensions: 2810192
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 13327
Number of HSP's successfully gapped in prelim test: 859
Number of HSP's that attempted gapping in prelim test: 2722950
Number of HSP's gapped (non-prelim): 62546
length of query: 1208
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 1054
effective length of database: 8,745,867,341
effective search space: 9218144177414
effective search space used: 9218144177414
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 83 (36.6 bits)