BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046825
(1208 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86H36|RPA1_DICDI DNA-directed RNA polymerase I subunit rpa1 OS=Dictyostelium
discoideum GN=polr1a PE=3 SV=1
Length = 1615
Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/1269 (38%), Positives = 674/1269 (53%), Gaps = 210/1269 (16%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
C TC CPGHFGHI+L +P YNP+ F ++ LLK CF CHHFK + + + + +
Sbjct: 65 CATCSLDFIECPGHFGHIELAIPCYNPVSFQTIFKLLKNKCFHCHHFKHGKPIINQFIEE 124
Query: 61 LELIIKGDIIAAKSLDL---------DLPSESSNPEDSDV--SNKSSCSMVTPRGNYDNV 109
L L+ KGD++ A++L + SN E +V S++S + N N
Sbjct: 125 LTLLFKGDVVKARNLRERNVLLRGYEEKKKGKSNEEGEEVMESDESDSDKMDTDENKTNG 184
Query: 110 RNLKPQEWTSLQFAEAKLALLQFLKIETTK------------CGNCKAKNPRISKPTFGW 157
+ + + + + K ++ K E K CGNC A +PR+
Sbjct: 185 KIICDGVFNAKEIYSGKATHIEDFKREVFKEFFGSFSGYAIPCGNCGAYSPRLRNGDASK 244
Query: 158 IHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAA 217
+ MP D A L FS +E+ + +GT+
Sbjct: 245 SKLFIMPLHDKYATKNSAIKLPTNFSSVKEQTE---------------HGTW-------- 281
Query: 218 RRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFE-----LCSFISDMQQQG 272
P +V D ++KL+ENE E L + + +G
Sbjct: 282 ------------------------FAPWEVLDNMKKLFENEKEILDMLLGHLVPIVTNKG 317
Query: 273 ---------FGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYL 323
F K++ F+ V V P ++R P+ EHPQ ++++N +
Sbjct: 318 GAKKNVGRQFTKESNVDSLFMRVFPVTPARYRPPNFVNGRRSEHPQNSHYKGMVKSNKMI 377
Query: 324 ANAYVNQPDNAKVIVARWMNLQQSVNVLFD-GKNAAGQRDMASGICQLLEKKEGLFRQKL 382
+ AK +V +LQ VN ++D K+ + ++A+GI Q+LEKKEGLFR+ +
Sbjct: 378 RQSIDAGEGKAKFLVNSVCDLQMHVNNMYDNSKSNSNTNEVANGIKQILEKKEGLFRKHM 437
Query: 383 MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
MGKRVNYA R+VISPD L NE+G+P YFA LT+P+ VT +N +L ++ING E +P
Sbjct: 438 MGKRVNYAARTVISPDISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQAVINGPEQYP 497
Query: 443 GATHYLDK---LSTMRLPPNKKMRISIGRKLDTS-----RGAIVQPGKDSDNEFEGKMVY 494
GA D+ L + +K RI++ + L TS RG K VY
Sbjct: 498 GANFIEDENGHLINLSKESQEK-RIALSKTLLTSHPHAPRGV-------------NKKVY 543
Query: 495 RHLQDGDVVLVNRQPTLHKPSIMAHVVRVL-KGEKTLRMHYANCSTYNADFDGDEMNVHF 553
RHL GD VL NRQPTLHKP IM H V+VL K EKTLRMHY+NCSTYNADFDGDEMN+HF
Sbjct: 544 RHLLSGDYVLANRQPTLHKPGIMGHRVKVLGKNEKTLRMHYSNCSTYNADFDGDEMNIHF 603
Query: 554 PQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLY 613
PQ ++ AE I N QY+ P NG PLR LIQDHI++ LLTK+DT + +F +LY
Sbjct: 604 PQSLLASAEIREICANNYQYLVPRNGAPLRGLIQDHILTGVLLTKRDTLFTKADFQAILY 663
Query: 614 SSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGR 673
+S S + P P I KP PLW+GKQ+I+A LN +T GR
Sbjct: 664 ASCWSVNTKHPIVTPP-----------------PCILKPVPLWSGKQLISAALNQLTIGR 706
Query: 674 PPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGE 733
P +E K+P + T+ L T H
Sbjct: 707 APLNLEAPSKIPTKMWGTK---------------GLEITRDSH----------------- 734
Query: 734 EKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLL 791
++I +N++V G++DK F + YGLVHT ELY + AG+LL
Sbjct: 735 ------------------VIIRQNEMVAGILDKGHFGASSYGLVHTCYELYDPDVAGSLL 776
Query: 792 SALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEI 851
+ L R+FT +LQ GFTCGVDDLL+ +E+ R L + E G V A + D ++
Sbjct: 777 TLLGRMFTNYLQSRGFTCGVDDLLMKNKEEKFRVETLKKANEEGYTV---AAKFADLSKY 833
Query: 852 DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
D K + KA++ + VA D + LN++T S VI+ L+ G KP KN SL
Sbjct: 834 DEQKARDFFSKALQ--SEREVARLDGLLKKGLNQYT-SKVIDTLIPGGQQKPFPKNNFSL 890
Query: 912 MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
MT SGAKGS VNF Q+S LGQQELEGKRVPRMVSGKTLPSF +D + RAGGF++DRFL
Sbjct: 891 MTVSGAKGSVVNFSQVSCLLGQQELEGKRVPRMVSGKTLPSFQAYDASARAGGFVMDRFL 950
Query: 972 TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
TG+RPQ+Y+FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE L + YD +VR++DGS++Q
Sbjct: 951 TGVRPQDYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVQYDNTVRESDGSVIQ 1010
Query: 1032 FCYGEDGVDVHQTSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQEMI-YK---K 1087
F YGED +++ +T +++KF +A +++F +NQE++ Y K
Sbjct: 1011 FNYGEDSLEIGKTPYLTKFPIIAENYE---LFKSQF--PMEQLIEQLKNQEVVEYNRSIK 1065
Query: 1088 CSGQLD--------------ASNAYIMELPDALKDNAEKFADKFLSN---EMAKQDFLKL 1130
+LD S +++ +L ++ N +K K SN ++ ++DF L
Sbjct: 1066 TQPELDPVMSKFNPSSDLGCVSESFMNQLNHYIESNPQKLI-KTTSNRDGKINEKDFRNL 1124
Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
+ + S+ PGE VGLL +QS+GEPSTQMTLNTFHLAGRGE NVTLGIPRL+E++ A
Sbjct: 1125 MYLYYSRSMVSPGESVGLLCAQSIGEPSTQMTLNTFHLAGRGEANVTLGIPRLRELIMTA 1184
Query: 1191 SKDIKTPVI 1199
+ TP++
Sbjct: 1185 TTKPITPLM 1193
>sp|P10964|RPA1_YEAST DNA-directed RNA polymerase I subunit RPA190 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA190 PE=1
SV=2
Length = 1664
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/1281 (37%), Positives = 684/1281 (53%), Gaps = 178/1281 (13%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
C TCG + CPGH GHI+L VP YNPL FN LY L+ C FCHHF+ EV + K
Sbjct: 62 CSTCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACK 121
Query: 61 LELIIKG--------DIIAAKSLDLDLPSESSNPEDS-------------DVSNKSSCSM 99
L L+ G D I SL+ + ++ ED+ D+S+ +
Sbjct: 122 LRLLQYGLIDESYKLDEITLGSLNSSMYTDDEAIEDNEDEMDGEGSKQSKDISSTLLNEL 181
Query: 100 VTPRGNYDNV---------RNLKPQEWTSLQFAEAKLALLQFLK--IETTKCGNCKAKNP 148
+ R Y ++ R + +T+ E K + +F K + KC NC +P
Sbjct: 182 KSKRSEYVDMAIAKALSDGRTTERGSFTATVNDERKKLVHEFHKKLLSRGKCDNCGMFSP 241
Query: 149 RISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSFN-G 207
+ K F I + I N ++G + ++ K L S++ A + SF+ G
Sbjct: 242 KFRKDGFTKIFETALNEKQITNNRVKGFIRQDMIKKQKQAKKLDGSNEASANDEESFDVG 301
Query: 208 TFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISD 267
P T R + GS + L ++VK+I++ ++ E + ++
Sbjct: 302 RNPTT------RPKTGSTYI---------------LSTEVKNILDTVFRKEQCVLQYVFH 340
Query: 268 MQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAY 327
+ K FF+ V++VPP +FRLPSK G+ V E+ Q LLSKVL ++ + +
Sbjct: 341 SRPNLSRKLVKADSFFMDVLVVPPTRFRLPSKLGEEVHENSQNQLLSKVLTTSLLIRDLN 400
Query: 328 VN----QPD-----NAKVIVARWMN----LQQSVNVLFDGKNAAGQ---RDMASGICQLL 371
+ Q D + +VI +R MN +Q VN D A G+ + G+ Q L
Sbjct: 401 DDLSKLQKDKVSLEDRRVIFSRLMNAFVTIQNDVNAFIDSTKAQGRTSGKVPIPGVKQAL 460
Query: 372 EKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLR 431
EKKEGLFR+ +MGKRVNYA RSVISPDP + NEIG+PP FA++LTYPE VT +N+ +LR
Sbjct: 461 EKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELR 520
Query: 432 DSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRG---AIVQPGKDSDNEF 488
++ING + PGAT ++ + + IG ++ + ++ P +
Sbjct: 521 QAVINGPDKWPGATQIQNE--------DGSLVSLIGMSVEQRKALANQLLTPSSNVSTHT 572
Query: 489 EGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 548
K VYRH+++ DVVL+NRQPTLHK S+M H VRVL EKTLR+HYAN YNADFDGDE
Sbjct: 573 LNKKVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDE 632
Query: 549 MNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEF 608
MN+HFPQ+E +RAEA N+ N ++QY+ P++G P+R LIQDHI + LT KD+F R+++
Sbjct: 633 MNMHFPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQY 692
Query: 609 CQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNH 668
Q +Y G + G +RS+ LP P I+KP PLWTGKQ+IT VL +
Sbjct: 693 QQYIY---------GCIRPEDGH---TTRSKIVTLP--PTIFKPYPLWTGKQIITTVLLN 738
Query: 669 ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
+T PP + N + K+K K
Sbjct: 739 VT---PP--------------------------------DMPGINLISKNKI---KNEYW 760
Query: 729 GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNT 786
GK E E +L L+ G++DK+Q+ + YG+VH++ E+YG
Sbjct: 761 GKGSLENE---------------VLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEV 805
Query: 787 AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE 846
A +LS L RLFT ++ FTCG+DDL + + + R + L S + G+ E L+
Sbjct: 806 AAKVLSVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLD 865
Query: 847 DGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
D +L +++ +R + + D +S++N T S V+++ + +G +K
Sbjct: 866 KDTPADDPELLKRLQEILRDNNKSGI--LDAVTSSKVNAIT-SQVVSKCVPDGTMKKFPC 922
Query: 907 NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
N + M SGAKGS VN QI LGQQ LEG+RVP MVSGKTLPSF P++ AGG++
Sbjct: 923 NSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYV 982
Query: 967 IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
RF +G++PQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + +SYD S+RDAD
Sbjct: 983 KGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDAD 1042
Query: 1027 GSIVQFCYGEDGVDVHQTSFISKFD-------ALAAR------------ERGRGRGRNKF 1067
G++VQF YG D +D+ + S +++F+ AL + E +
Sbjct: 1043 GTLVQFMYGGDAIDITKESHMTQFEFCLDNYYALLKKYNPSALIEHLDVESALKYSKKTL 1102
Query: 1068 CDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADK----FLSNE-M 1122
+ H+ Q + Y + + + Y+ + + +D E F DK F S++ +
Sbjct: 1103 KYRKKHSKEPHYKQSVKYDPVLAKYNPAK-YLGSVSENFQDKLESFLDKNSKLFKSSDGV 1161
Query: 1123 AKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPR 1182
++ F L++ K++ SL PGE VG++ASQSVGEPSTQMTLNTFH AG G NVTLGIPR
Sbjct: 1162 NEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPR 1221
Query: 1183 LQEILTIASKDIKTPVITCPL 1203
L+EI+ AS IKTP +T P+
Sbjct: 1222 LREIVMTASAAIKTPQMTLPI 1242
>sp|O35134|RPA1_MOUSE DNA-directed RNA polymerase I subunit RPA1 OS=Mus musculus GN=Polr1a
PE=1 SV=2
Length = 1717
Score = 628 bits (1620), Expect = e-179, Method: Compositional matrix adjust.
Identities = 397/1094 (36%), Positives = 571/1094 (52%), Gaps = 165/1094 (15%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
C TC Q C GH GHIDL + VYNP LF+ LY LL+ C CH R + + +
Sbjct: 64 CATCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQ 123
Query: 61 LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
L ++ G + A L+ L E+ +P ++ + +E+
Sbjct: 124 LRVLEVGALQAVYELERILSRFLEETGDPSAFEIQEEL-------------------EEY 164
Query: 118 TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
TS K+ L + T N C++++ +++ F HM PH
Sbjct: 165 TS------KILQNNLLGSQGTHVKNVCESRSKLVAQ--FWKTHMAAKQCPH--------- 207
Query: 175 GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQ 234
C G + E L ++ T D +G P G K
Sbjct: 208 -CKTGRSVVRKEHNSKL----------IITYPATVHKKSDQEGTELPEGVPEAP-GIDKA 255
Query: 235 KDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIK 293
+ G L PS ++ + +W+NE F L S + G S+FFL ++VPP +
Sbjct: 256 QMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSR 315
Query: 294 FRLPSKGGDSVMEHPQTVLLSKVLQANIY-----------------LANAYVNQPDNAKV 336
+R ++ GD + + QTV L V++ + + +++ +++ V
Sbjct: 316 YRPVNRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDSSV 375
Query: 337 IVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLF 378
+ R W+ LQ VN++FD + + GI Q+LEKKEGLF
Sbjct: 376 AIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMDKLMLEKYPGIRQILEKKEGLF 435
Query: 379 RQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGA 438
R+ +MGKRV+YA RSVI PD Y+ NEIGIP FA +LTYP+ VTPWNV +LR ++ING
Sbjct: 436 RKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGP 495
Query: 439 EIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRH 496
+HPGA+ + D T + R ++ ++L T P + K+V RH
Sbjct: 496 NVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLT-------PATGAPKPQGTKVVCRH 548
Query: 497 LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQD 556
+++GD++L+NRQPTLH+PSI AH R+L EK LR+HYANC YNADFDGDEMN HFPQ
Sbjct: 549 VKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS 608
Query: 557 EVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSG 616
E+ RAEAY + + QY+ P +G PL LIQDH+VS A +T + F R+++ +L+Y
Sbjct: 609 ELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRG- 667
Query: 617 VSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPF 676
T K G+ L PAI KP PLWTGKQV++ +L +I
Sbjct: 668 --------LTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI------- 702
Query: 677 VVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKE 736
+P+D+ + N K K G K V E KP +
Sbjct: 703 -------IPEDY---------------------APLNLSGKAKIGSKAWVKE-KPRPIPD 733
Query: 737 AEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSAL 794
+ + + E +++I + +L+ GV+DKA + YGLVH E+YG T+G +L+ L
Sbjct: 734 FDPDS-----MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCL 788
Query: 795 SRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDP 853
+RLFT +LQ++ GFT GV+D+L+ + + R+ + S + G + AL L + A D
Sbjct: 789 ARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQCGPQAVKAALSLPETASCDE 848
Query: 854 IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMT 913
I+ K + + D + DMK ++N H S+ + + GL + +N + +M
Sbjct: 849 IQGKWQDAHLSKDQRDFNM--IDMKFKEEVN-HYSNEINKACMPLGLHRQFPENNLQMMV 905
Query: 914 TSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTG 973
SGAKGS VN QIS LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+ RFLTG
Sbjct: 906 QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG 965
Query: 974 LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFC 1033
+RP E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L I YD +VRD+DGS+VQF
Sbjct: 966 IRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFL 1025
Query: 1034 YGEDGVDVHQTSFI 1047
YGEDG+D+ +T F+
Sbjct: 1026 YGEDGLDIPKTQFL 1039
Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 78/111 (70%)
Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
S + ++ D ++ A + + +E++ L++ K+ SL PGE VGLLA+QS
Sbjct: 1166 VSETFEKKIDDFSQEWAAQAERSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQS 1225
Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+
Sbjct: 1226 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVF 1276
>sp|O95602|RPA1_HUMAN DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens GN=POLR1A
PE=1 SV=2
Length = 1720
Score = 620 bits (1599), Expect = e-176, Method: Compositional matrix adjust.
Identities = 403/1103 (36%), Positives = 573/1103 (51%), Gaps = 172/1103 (15%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
C TC Q C GH GHI+L + VYNPLLF+ LY LL+ C CH R + + +
Sbjct: 64 CSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQ 123
Query: 61 LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
L ++ G + A L+ L E+ +P S++ + E
Sbjct: 124 LRVLEVGALQAVYELERILNRFLEENPDPSASEIREE--------------------LEQ 163
Query: 118 TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNG--MPHADIRANLIRG 175
+ + + L Q ++ C++K+ I+ F HMN PH
Sbjct: 164 YTTEIVQNNLLGSQGAHVKNV----CESKSKLIA--LFWKAHMNAKRCPH---------- 207
Query: 176 CNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQK 235
C G + E L TFP A QK S P G ++ +
Sbjct: 208 CKTGRSVVRKEHNSKLTI--------------TFPAMVHRTA--GQKDSE--PLGIEEAQ 249
Query: 236 DLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKF 294
G L P+ ++ + LW+NE F L S M G + S+FFL ++VPP ++
Sbjct: 250 IGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRY 309
Query: 295 RLPSKGGDSVMEHPQTVLLSKVLQANIYL-----------------ANAYVNQPDNAKVI 337
R S+ GD + + QTV L V++ + + A ++ ++ +
Sbjct: 310 RPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVATPTTDEEKDSLIA 369
Query: 338 VAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFR 379
+ R W+ LQ VN++FD + D GI Q+LEKKEGLFR
Sbjct: 370 IDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFR 429
Query: 380 QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 439
+ +MGKRV+YA RSVI PD Y+ NEIGIP FA +LTYP+ VTPWNV +LR ++ING
Sbjct: 430 KHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPN 489
Query: 440 IHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHL 497
+HPGA+ + D T + R ++ ++L T P + K+V RH+
Sbjct: 490 VHPGASMVINEDGSRTALSAVDMTQREAVAKQLLT-------PATGAPKPQGTKIVCRHV 542
Query: 498 QDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDE 557
++GD++L+NRQPTLH+PSI AH R+L EK LR+HYANC YNADFDGDEMN HFPQ E
Sbjct: 543 KNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSE 602
Query: 558 VSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGV 617
+ RAEAY + + QY+ P +G PL LIQDH+VS A +T + F R+ + +L+Y
Sbjct: 603 LGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYR--- 659
Query: 618 SSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFV 677
T K G+ L+S P+I KP PLWTGKQV++ +L +I
Sbjct: 660 ------GLTDKVGRVKLLS----------PSILKPFPLWTGKQVVSTLLINI-------- 695
Query: 678 VERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEA 737
+P+D N GK T K KE PG ++
Sbjct: 696 ------IPEDHIPL------------NLSGKAKITGK------AWVKETPRSVPGFNPDS 731
Query: 738 EKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLLSALS 795
+ E +++I + +L+ GV+DKA + YGLVH E+YG T+G +L+ L+
Sbjct: 732 ---------MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLA 782
Query: 796 RLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI 854
RLFT +LQ++ GFT GV+D+L+ + +R+ + S G + AL L + A D +
Sbjct: 783 RLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEV 842
Query: 855 KLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
+ K + A G D+K ++N H S+ + + GL + +N + +M
Sbjct: 843 RGK--WQDAHLGKDQRDFNMIDLKFKEEVN-HYSNEINKACMPFGLHRQFPENSLQMMVQ 899
Query: 915 SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
SGAKGS VN QIS LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+ RFLTG+
Sbjct: 900 SGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGI 959
Query: 975 RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
+P E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L + YD +VRD+DGS+VQF Y
Sbjct: 960 KPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLY 1019
Query: 1035 GEDGVDVHQTSFIS--KFDALAA 1055
GEDG+D+ +T F+ +F LA+
Sbjct: 1020 GEDGLDIPKTQFLQPKQFPFLAS 1042
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 81/114 (71%)
Query: 1094 ASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQS 1153
S + ++ D ++ A + + +E++ L++ K+ SL +PGE VGLLA+QS
Sbjct: 1159 VSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQS 1218
Query: 1154 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGK 1207
+GEPSTQMTLNTFH AGRGEMNVTLGIPRL+EIL +AS +IKTP+++ P+L K
Sbjct: 1219 IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTK 1272
>sp|O54889|RPA1_RAT DNA-directed RNA polymerase I subunit RPA1 OS=Rattus norvegicus
GN=Polr1a PE=1 SV=1
Length = 1716
Score = 613 bits (1581), Expect = e-174, Method: Compositional matrix adjust.
Identities = 403/1107 (36%), Positives = 579/1107 (52%), Gaps = 173/1107 (15%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
C TC Q C GH GHIDL + VYNPLLF+ LY LL+ C CH R + V +
Sbjct: 64 CSTCVQDFNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAIHLLVCQ 123
Query: 61 LELIIKGDIIAAKSLDLDLP---SESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 117
L+++ G + A L+ L E+S+P ++ + +E+
Sbjct: 124 LKVLDVGALQAVYELERILSRFLEETSDPSAFEIQEEL-------------------EEY 164
Query: 118 TSLQFAEAKLALLQFLKIETTKCGN-CKAKNPRISKPTFGWIHMNG--MPHADIRANLIR 174
TS K+ L + N C++++ ++ F HM PH +++R
Sbjct: 165 TS------KILQNNLLGSQGAHVKNVCESRSKLVAH--FWKTHMAAKRCPHCKTGRSVVR 216
Query: 175 ---GCNLGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGF 231
L T+ +K D + PE G+ A P G
Sbjct: 217 KEHNSKLTITYPAMVHKK--SGQKDAELPE---------------------GAPAAP-GI 252
Query: 232 KKQKDLFSGPLLPSDVKDIIEKLWENE-FELCSFISDMQQQGFGKKAGHSIFFLGVVLVP 290
+ + G L PS ++ + +W+NE F L S + G S+FFL ++VP
Sbjct: 253 DEAQMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVP 312
Query: 291 PIKFRLPSKGGDSVMEHPQTVLLSKVLQANIY-----------------LANAYVNQPDN 333
P ++R ++ GD + + QTV L V++ + + +++ ++
Sbjct: 313 PSRYRPINRLGDQMFTNGQTVNLQAVMKDAVLIRKLLAVMAQEQKLPCEMTEITIDKEND 372
Query: 334 AKVIVAR------------------WMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKE 375
+ + R W+ LQ VN++FD + GI Q+LEKKE
Sbjct: 373 SSGAIDRSFLSLLPGQSLTDKLYNIWIRLQSHVNIVFDSDMDKLMLEKYPGIRQILEKKE 432
Query: 376 GLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSII 435
GLFR+ +MGKRV+YA RSVI PD Y+ NEIGIP FA +LTYP+ VTPWNV +LR ++I
Sbjct: 433 GLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVI 492
Query: 436 NGAEIHPGATHYL--DKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMV 493
NG +HPGA+ + D T + R ++ ++L T I +P K+V
Sbjct: 493 NGPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTPSTGIPKPQG-------AKVV 545
Query: 494 YRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHF 553
RH+++GD++L+NRQPTLH+PSI AH +L EK LR+HYANC YNADFDGDEMN HF
Sbjct: 546 CRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMNAHF 605
Query: 554 PQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLY 613
PQ E+ RAEAY + + QY+ P +G PL LIQDH+VS A +T + F R+++ +L+Y
Sbjct: 606 PQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVY 665
Query: 614 SSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGR 673
T K G+ L PAI KP PLWTGKQV++ +L +I
Sbjct: 666 RG---------LTDKVGRVKLFP----------PAILKPFPLWTGKQVVSTLLINI---- 702
Query: 674 PPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGE 733
+P+D+ + N K K G K V E KP
Sbjct: 703 ----------IPEDY---------------------TPLNLTGKAKIGSKAWVKE-KPRP 730
Query: 734 EKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFAD--YGLVHTVQELYGSNTAGTLL 791
+ + + + E +++I + +L+ GV+DKA + YGLVH E+YG T+G +L
Sbjct: 731 VPDFDPDS-----MCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVL 785
Query: 792 SALSRLFTVFLQMH-GFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAE 850
+ L+RLFT +LQ++ GFT GV+D+L+ + + R+ + S + G R AL L + A
Sbjct: 786 TCLARLFTAYLQLYRGFTLGVEDILVKPNADVMRQRIIEESTQCGPRAVRAALNLPEAAS 845
Query: 851 IDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS 910
D I+ K + A+ DMK ++N H S+ + + GL + +N +
Sbjct: 846 CDEIQGK--WQDAIWRKDQRDFNMIDMKFKEEVN-HYSNEINKACMPFGLHRQFPENNLQ 902
Query: 911 LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRF 970
+M SGAKGS VN QIS LGQ ELEG+R P M SGK+LP F P+++ PRAGGF+ RF
Sbjct: 903 MMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRF 962
Query: 971 LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIV 1030
LTG+RP E++FHCMAGREGLVDTAVKTSRSGYLQRC+IK+LE L I YD +VRD+DGS+V
Sbjct: 963 LTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVV 1022
Query: 1031 QFCYGEDGVDVHQTSFIS--KFDALAA 1055
QF YGEDG+D+ +T F+ +F LA+
Sbjct: 1023 QFLYGEDGLDIPKTQFLQPKQFPFLAS 1049
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 69/88 (78%)
Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
+E++ L++ K+ SL PGE VGLLA+QS+GEPSTQMTLNTFH AGRGEMNVTLG
Sbjct: 1192 SELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLG 1251
Query: 1180 IPRLQEILTIASKDIKTPVITCPLLVGK 1207
IPRL+EIL +AS +IKTP+++ P+ K
Sbjct: 1252 IPRLREILMVASANIKTPMMSVPVFNTK 1279
>sp|P91875|RPA1_DROME DNA-directed RNA polymerase I subunit RPA1 OS=Drosophila melanogaster
GN=RpI1 PE=1 SV=2
Length = 1642
Score = 548 bits (1411), Expect = e-154, Method: Compositional matrix adjust.
Identities = 334/867 (38%), Positives = 488/867 (56%), Gaps = 125/867 (14%)
Query: 223 GSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI--------SDMQQQGFG 274
G+GA G + K +F+ + + + +++ N EL + +D+ Q G
Sbjct: 238 GTGAETGG--QNKVIFA-----DECRRYLRQIYANYPELLKLLVPVLGLSNTDLTQ---G 287
Query: 275 KKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQAN-------IYLANAY 327
++ +FF+ + V P + R + GD + +PQT + +++ N Y+
Sbjct: 288 DRSPVDLFFMDTLPVTPPRARPLNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQ 347
Query: 328 VNQPDNAKV-------------IVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKK 374
+ AK + W+ LQ SV+VL D N + + G+ Q++EKK
Sbjct: 348 EKLTEEAKAAYQTLKGETAHEKLYTAWLALQMSVDVLLD-VNMSREMKSGEGLKQIIEKK 406
Query: 375 EGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSI 434
GL R +MGKRVNYA R+VI+PDP + V+EIGIP FA +L+YP VT WNV +LR +
Sbjct: 407 SGLIRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMV 466
Query: 435 INGAEIHPGATHYLDK--LSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEG-K 491
+NG ++HPGA + DK +T N R S+ + L + N +G K
Sbjct: 467 MNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLS-------------NPKDGIK 513
Query: 492 MVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNV 551
+V+RH+ +GDV+L+NRQP+LHKPSIM H R+L GEKT R+HY+NC YNADFDGDEMN
Sbjct: 514 IVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNA 573
Query: 552 HFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQL 611
H+PQ EV+RAEAYN+VN + Y+ P +G PL LIQDH++S L+ + F NR+++ QL
Sbjct: 574 HYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQL 633
Query: 612 LYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITR 671
++ +S+ ++++ L P I KP LW+GKQ+++ ++ +I
Sbjct: 634 VFQG-------------------LSQLKKDIKLLPPTILKPAVLWSGKQILSTIIINII- 673
Query: 672 GRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKP 731
P+ + R N D +K +GK V +P
Sbjct: 674 -------------PEGY--ERINLD-----------SFAKI-------AGKNWNVSRPRP 700
Query: 732 ---GEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNT 786
G E +LSE ++ I +L+ GV+DK Q+ YGL+H + ELYG +
Sbjct: 701 PICGTNPEGN-------DLSESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGDV 753
Query: 787 AGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELE 846
+ LL+A +++FT FLQ+ GFT GV D+L+ +R+R+ + +G ALELE
Sbjct: 754 STLLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALELE 813
Query: 847 DGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGK 906
D D +L ++E A V D K S L+ +T + + + L GL+
Sbjct: 814 DEPPHD--ELVEKMEAAYVKDSKFRV-LLDRKYKSLLDGYT-NDINSTCLPRGLITKFPS 869
Query: 907 NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
N + LM SGAKGS VN QIS LGQ ELEGKR P M+SGK+LPSF ++ +P++GGFI
Sbjct: 870 NNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGFI 929
Query: 967 IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
RF+TG++PQ+++FHCMAGREGL+DTAVKTSRSGYLQRCLIK+LE L + YD +VRD+D
Sbjct: 930 DGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSD 989
Query: 1027 GSIVQFCYGEDGVDVHQTSFIS-KFDA 1052
S+VQF YGEDG+D+ ++ F + KF A
Sbjct: 990 NSVVQFLYGEDGLDILKSKFFNDKFCA 1016
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 68/84 (80%)
Query: 1124 KQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRL 1183
K+ +++ K + SLA PGEPVGL+A+QS+GEPSTQMTLNTFH AGRGEMNVTLGIPRL
Sbjct: 1156 KETIADIMRVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRL 1215
Query: 1184 QEILTIASKDIKTPVITCPLLVGK 1207
+EIL +AS +IKTP + P+ G+
Sbjct: 1216 REILMLASSNIKTPSMDIPIKPGQ 1239
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
C TC + Q CPGH GHI+L PVYNP + LL C C+ + E E + +
Sbjct: 66 CGTCLKLQD-CPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQ 124
Query: 61 LELIIKGDIIAAKSLDL 77
L LI G II A+ L+L
Sbjct: 125 LRLIDAGYIIEAQELEL 141
>sp|P16355|RPA1_TRYBB DNA-directed RNA polymerase I subunit RPA1 OS=Trypanosoma brucei
brucei GN=TRP11 PE=1 SV=1
Length = 1744
Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust.
Identities = 273/802 (34%), Positives = 415/802 (51%), Gaps = 131/802 (16%)
Query: 279 HSIFFLGVVLVPPIKFRLPS--KGGDS--VMEHPQTVLLSKVL------------QANIY 322
+ +FFL +LVPP+ RL S + D+ ++ QT LS +L AN
Sbjct: 333 YKLFFLDRILVPPLPLRLSSGVRVNDNGLIIPDEQTRALSDILGFVEQIECFHTLSANST 392
Query: 323 LANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKL 382
+++ A V + NLQQ V+ + + I KKEGLFR +
Sbjct: 393 NGRSFITDAQRA-VNESNLRNLQQKVDEFY------------AEIVNSFAKKEGLFRMNM 439
Query: 383 MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVT---PWNVVKLRDSIINGAE 439
MGKRVN ACRSVISPDP++ NE+ +P A L++PE+VT P + L+ ++NG
Sbjct: 440 MGKRVNQACRSVISPDPFVEPNEVLLPRPLARALSFPEQVTCFAPARMNLLKHCVVNGPR 499
Query: 440 IHPGATHYLDKLSTMRL------PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMV 493
+PGATH + + + P + R R ++ + +V
Sbjct: 500 KYPGATHIELRHANGEIRSVDLNVPEQTRRQHAARFFAMAQSGVTL------------IV 547
Query: 494 YRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHF 553
YRH+ +GD V+ NRQPTLHKPS+M + V+VL G KT+R HY N +++NADFDGDEMNVH
Sbjct: 548 YRHILNGDRVIFNRQPTLHKPSMMGYRVKVLSGSKTIRFHYVNGNSFNADFDGDEMNVHV 607
Query: 554 PQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLY 613
PQ +RAE +++AN Y+ P++G P+R LIQDH+ + L+T +D F + F QL+Y
Sbjct: 608 PQSIETRAEVETLMDANINYLVPTSGRPIRGLIQDHVAAGVLVTLRDKFFDHSTFVQLVY 667
Query: 614 SSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGR 673
+G+G + + + + E++P +PAI P P+WTGKQ+I+ ++
Sbjct: 668 ------NGVGPYIQEN-----VGITLAELIP-IPAILMPRPMWTGKQLISVMVR------ 709
Query: 674 PPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGE 733
F + +A R+ L T+++ + + P
Sbjct: 710 ---------------FSSGLSAASDCGREIEGGITLKGTSQI-------QPSAFDRIPAG 747
Query: 734 EKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLL 791
+A + KS + + ++ ++L+ G + K Q ++ H V ELYG + G L
Sbjct: 748 SCDAVRAKS--GAVVDSTVMFANSELITGFMCKKQLGASNMSAPHHVYELYGPHRTGQLF 805
Query: 792 SALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEI 851
+A R+ + L+ G + +DD+ ++ D+ER R + L ++
Sbjct: 806 AAFGRVLLLALRKEGLSLAMDDMFLV-DEER-RCDLLR--------------------KL 843
Query: 852 DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISL 911
D I L E+A AA D ++ + E + + +L P KN + L
Sbjct: 844 DDIALDVPDEEAT-----AAPMIADY----------ATKIQQEFVPQRMLVPFPKNHLLL 888
Query: 912 MTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFL 971
MT SGAKGS +N Q+S LGQQ +G RV RM S KTLPSF + R+ GF + F
Sbjct: 889 MTISGAKGSNLNATQMSLQLGQQLFDGLRVKRMNSSKTLPSFFTNEKRARSFGFAMGSFA 948
Query: 972 TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQ 1031
+G+RP EY H MAGR+GL+DTAVKTSRSG+LQRCLIK LE L + +D +VRD++GS++Q
Sbjct: 949 SGIRPAEYTIHAMAGRDGLIDTAVKTSRSGHLQRCLIKGLESLVVHWDRTVRDSNGSVIQ 1008
Query: 1032 FCYGEDGVDVHQTSFISKFDAL 1053
F YG DG+D + S ++ ++ +
Sbjct: 1009 FMYGGDGLDPCKASTLTAWEMM 1030
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 1101 ELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQ 1160
+L + L+ +K+ F ++ + + + +L +PGEPVGLLA+Q+ GEPSTQ
Sbjct: 1124 QLKERLQQRRQKWVGAF------EKTLADITARRRLWALCEPGEPVGLLAAQAAGEPSTQ 1177
Query: 1161 MTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVI 1199
MTLNTFH AG +VT GIPRL+E+L AS + V+
Sbjct: 1178 MTLNTFHTAGSTVSHVTEGIPRLRELLIYASVNKAAVVV 1216
>sp|P15398|RPA1_SCHPO DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpa1 PE=1 SV=2
Length = 1689
Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust.
Identities = 265/747 (35%), Positives = 405/747 (54%), Gaps = 92/747 (12%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
C TC + CPGHFGHI L +P Y+PL F+ +Y LL+ C +CHHFK S+ +V +
Sbjct: 63 CATCHLDERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCR 122
Query: 61 LELIIKG-----DIIAAKSLDLDLPSES--------SNPEDSDVSN----KSSCSMVTPR 103
L+L+ G +++ SL + S S+ EDS + + K + +++ R
Sbjct: 123 LKLLDYGLLNESEMVENVSLTEAIIKNSNGTPLEDGSDSEDSGLGHDDIAKDAATLMRIR 182
Query: 104 GNY------DNVRNLK-PQEWTSLQFAEAKLALLQFLKIETTK--CGNCKAKNPRISKPT 154
+ D+ +N + T+L E K + F +++ C NC++ +P K
Sbjct: 183 DEFVAKSIADSRQNAHIDAQLTTLLLHERKKVVRAFYHAISSRKQCDNCQSFSPNFRKEG 242
Query: 155 FGWI--------HMNGMPHA-DIRANLIRGCNLGETFSGGEEEKDLGASSDVDAPETHSF 205
F I ++ M IR++++R + + +D G D D+
Sbjct: 243 FAKIFEIPLSGKNLQFMEQTGKIRSDVLRD-------TSKKHHEDEGYDGDSDSSNESEV 295
Query: 206 NGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFI 265
G +D ++ K + G K + ++V++ + +L+ E +
Sbjct: 296 EGIDLFEEDPNPLKN-KSKSPIAHGAKY--------MTSTEVRNHLRRLFVKE---NVVL 343
Query: 266 SDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLAN 325
S + GK A +FFL + VPP +FR SK GD V E+ Q LL+++LQ++I +A+
Sbjct: 344 SRLYAHKRGKPASADMFFLQNIAVPPTRFRPASKMGDEVHENIQNELLTRILQSSIQIAS 403
Query: 326 AYVN-----QPDNAK----------VIVARWMNLQQSVNVLFDGK---NAAGQ-RDMASG 366
+ PD + +++ ++ LQ VN L D ++ GQ R + G
Sbjct: 404 LSKDSTVEVNPDEKEGLERRSRAFELLINAFVQLQHDVNSLIDSNRNPSSGGQSRTVPPG 463
Query: 367 ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
I Q+LEKKEGLFR+ +MGKRVNYA RSVISPDP + NEIG+PP FA +LTYPE VT +N
Sbjct: 464 IKQILEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYN 523
Query: 427 VVKLRDSIINGAEIHPGATHYLDKLSTM--RLPPNKKMRISIGRKLDTSRGAIVQ-PGKD 483
++R+++ING PGA+H ++ T+ +P + R ++ +L T + ++ P
Sbjct: 524 FNEMRNAVINGPHKWPGASHIQNEDGTLISLMPLTIEQRTALANQLLTPQSNLISSPYSY 583
Query: 484 SDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNAD 543
S K VYRH+++GD++++NRQPTLHKPS+MAH R+L GEKT+RMHYANC++YNAD
Sbjct: 584 SRLINTNKKVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNAD 643
Query: 544 FDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFL 603
FDGDEMN+HFPQ +R+EA I N ++QY+ P++GDPLR LIQDH+V LT KDTF
Sbjct: 644 FDGDEMNMHFPQSTNARSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFY 703
Query: 604 NRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVIT 663
RDE+ QLL+ + KP + + R + L PAI +P WTGKQ+I+
Sbjct: 704 TRDEYQQLLFQA-----------LKPDETGMYGR----IKTLPPAIQRPGIYWTGKQIIS 748
Query: 664 AV-LNHITRGRPPFVVERGGKLPQDFF 689
+V LN RP ++ K+P ++
Sbjct: 749 SVLLNLKPSDRPGLNLKSKAKVPGKYW 775
Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust.
Identities = 227/489 (46%), Positives = 297/489 (60%), Gaps = 49/489 (10%)
Query: 748 SEEKLLIYKN-DLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
SEE +++ + +L+ G++DK+ F + +GLVH+V ELYG + AG LLS LSRLFT + QM
Sbjct: 779 SEEGSVLFDDGELLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLLSVLSRLFTAYAQM 838
Query: 805 HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEID-PIKL-KSEIEK 862
GFTC +DDL + + + R+ L E GK LEA G D PI L + +E+
Sbjct: 839 RGFTCRMDDLRLDEQGDNWRRQLL----ENGKSFGLEAASEYVGLSTDSPIALLNANLEE 894
Query: 863 AMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKV 922
R D + D M ++N TSS +IN+ + +GLL N + MT SGAKGS V
Sbjct: 895 VYRD--DEKLQGLDAAMKGKMNGLTSS-IINKCIPDGLLTKFPYNHMQTMTVSGAKGSNV 951
Query: 923 NFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFH 982
N QIS LGQQELEG+RVP MVSGK+LPSF P++ + ++GGFI RFLTG+ PQEYYFH
Sbjct: 952 NVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIASRFLTGIAPQEYYFH 1011
Query: 983 CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV- 1041
CMAGREGL+DTAVKTSRSGYLQRCL+K+LE L + YD++VRD+DGSIVQF YGED +DV
Sbjct: 1012 CMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDSDGSIVQFHYGEDSLDVT 1071
Query: 1042 ---HQTSF-------------------ISKFDALAARERGRGRGRNKF-----CDKGSHT 1074
H T F +S D+ A + + + DK +
Sbjct: 1072 KQKHLTQFEFSAKNYKSLIQKYKVKSVLSAVDSETASSYAKKALKKPYKYDPVLDKYPPS 1131
Query: 1075 FVMGRNQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKFLSNEMAKQDFLKLVKHK 1134
+G E + A + Y + PD L A K K + + + F L++ +
Sbjct: 1132 RYLGSVSEKFQR-------AVDEYTQKNPDKLI--ASKKESKLDDSLLNESKFKALMQLR 1182
Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
+ SL PGE VG+LASQS+GEPSTQMTLNTFH AG G NVTLGIPRL+EI+ AS +I
Sbjct: 1183 YQQSLVDPGESVGVLASQSIGEPSTQMTLNTFHFAGFGAKNVTLGIPRLREIIMTASANI 1242
Query: 1195 KTPVITCPL 1203
+TP +T L
Sbjct: 1243 QTPTMTLRL 1251
>sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens
GN=POLR3A PE=1 SV=2
Length = 1390
Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust.
Identities = 309/965 (32%), Positives = 460/965 (47%), Gaps = 164/965 (16%)
Query: 280 SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
S L +LVPP+ R PS D E T+ L++++ N + ++ ++
Sbjct: 248 SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305
Query: 337 IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
I+ W LQ + + + + +MA G Q L+ K+G FR L GKRV+++
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 392 RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
R+VISPDP L ++E+ +P + A LT+PE+V N+ LR + NG E+HPGA +
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRH 425
Query: 452 STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
+ M+ R + ++L G +V RHL DGDVVL NRQP+L
Sbjct: 426 TQMKRFLKYGNREKMAQELKY-----------------GDIVERHLIDGDVVLFNRQPSL 468
Query: 512 HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
HK SIMAH+ RV K +T R + C+ YNADFDGDEMN+H PQ E ++AEA ++
Sbjct: 469 HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527
Query: 572 QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
V P NG+PL + IQD + A LLT KDTF +R + CQ++ S
Sbjct: 528 NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570
Query: 632 RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFK 690
+L+ + E+ + L P I KP LWTGKQ+ + +L P D
Sbjct: 571 -ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILR-----------------PSDDNP 612
Query: 691 TRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEE 750
R N + K GK GE+ A ++
Sbjct: 613 VRANLRTKG-----------------KQYCGK---------GEDLCA----------NDS 636
Query: 751 KLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
+ I ++L+ G +DK + + + + +G N A +S L+RL V+L GF
Sbjct: 637 YVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGF 696
Query: 808 TCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKA 863
+ G+ D+ +LK K +E ++EAL ++++
Sbjct: 697 SIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGKLQQQ 739
Query: 864 MRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVN 923
+ + +K S + H S+ + EL N M G+KGS +N
Sbjct: 740 PGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKGSFIN 791
Query: 924 FQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHC 983
Q+ + +GQQ + G RVP ++LP F P A GF+ + F +GL P E++FH
Sbjct: 792 ISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHT 851
Query: 984 MAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
MAGREGLVDTAVKT+ +GY+QR L+K+LE L YD +VR + G I+QF YG DG+D
Sbjct: 852 MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLD--P 909
Query: 1044 TSFISKFDALAARERGRGRGRNKFCDKGSHTFVMGRNQ-----EMIYKKCSGQLDASNAY 1098
+ K + L E R K + +N+ E I KK S L +++
Sbjct: 910 AAMEGKDEPL---EFKRVLDNIKAVFPCPSEPALSKNELILTTESIMKK-SEFLCCQDSF 965
Query: 1099 IMELPDALKDNAEKFA---DKFLSNEMAKQD-----------------FLKLVKHKFVLS 1138
+ E+ +K +EK DK+ N+ + FL+ + K++ +
Sbjct: 966 LQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQVEKFLETCRDKYMRA 1025
Query: 1139 LAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPV 1198
+PG VG L +QS+GEP TQMTL TFH AG MN+TLG+PR++EI+ ASK I TP+
Sbjct: 1026 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPI 1084
Query: 1199 ITCPL 1203
IT L
Sbjct: 1085 ITAQL 1089
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
C+TCG+ C GH+G+IDL +P ++ F + +L+ IC C H S+ E
Sbjct: 69 CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121
>sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc1 PE=2 SV=1
Length = 1405
Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust.
Identities = 299/977 (30%), Positives = 459/977 (46%), Gaps = 183/977 (18%)
Query: 287 VLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQ 346
V PP+ R + E TV +++++ + L A +++ ++ +W +Q
Sbjct: 251 VPAPPVCIRPSVAQEGATTEDDLTVKITEIIWTS-SLIRAALSKGTPISNLMEQWEFMQL 309
Query: 347 SVNVLFDGKNAAGQR--DMAS----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
S+ ++ G R DM S G CQ L+ K+G FR L GKRV+++ R+VISPDP
Sbjct: 310 SI-AMYINSEMPGLRPSDMPSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPN 368
Query: 401 LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK 460
L ++++ +P A LT+PERVT N L+D I NG ++HPGA + +D+ S
Sbjct: 369 LRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPGANYVIDRESGF------ 422
Query: 461 KMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHV 520
K + G + + +D+ G +V RHL D DVVL NRQP+LHK SIMAH+
Sbjct: 423 KRFLRFGNR-----------NRIADDLKIGDIVERHLHDNDVVLFNRQPSLHKLSIMAHL 471
Query: 521 VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGD 580
V+V + +TLR + C YNADFDGDEMN+H PQ E ++ EA ++ N V P NG+
Sbjct: 472 VKV-RPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNNLVSPRNGE 530
Query: 581 PLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQ 640
P+ + QD I +A LL+ KDTFL+R S S + + ++ S
Sbjct: 531 PIIAATQDFITAAYLLSLKDTFLDRK-----------SISNICCY--------MMDASTH 571
Query: 641 EVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSD 700
LP PAI KP LWTGKQV T ++ P F K N D
Sbjct: 572 IDLPP-PAIIKPRCLWTGKQVFTVLMK-----------------PNRFSKVLVNLD---- 609
Query: 701 RKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLV 760
+KT + KS K+ E + L+I ++++
Sbjct: 610 ---------AKTRSFSRIKS--------------------KTPEMCPKDGYLMIRNSEII 640
Query: 761 RGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLL-- 815
GV+DK+ D L + + YG+ A ++ LS++ FL GF+ G++D+
Sbjct: 641 AGVVDKSVVGDGKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGNRGFSIGIEDVQPG 700
Query: 816 --ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVA 873
+ KE S++ + LE + G + + A
Sbjct: 701 KSLSSQKEILVNKAYATSDDFIMQYAKGILECQPGMDQE--------------------A 740
Query: 874 YFDMKMTSQLNKHTSSSVINELLSEGLLKPTG-KNWISLMTTSGAKGSKVNFQQISSHLG 932
+ K++S L+K + + + E + G N +M T G+KGSK+N Q+ + +G
Sbjct: 741 TLEAKISSTLSK------VRDDVGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVG 794
Query: 933 QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
QQ + GKRVP ++LP FH P A GF+ + F +GL P E+ FH ++GREGLVD
Sbjct: 795 QQIISGKRVPDGFQDRSLPHFHKNSKHPLAKGFVSNSFYSGLTPTEFLFHAISGREGLVD 854
Query: 993 TAVKTSRSGYLQRCLIKNLECLKISY---------------------DYSVRDADGSIVQ 1031
TAVKT+ +GY+ R L+K+LE L +Y D + + DG V+
Sbjct: 855 TAVKTAETGYMSRRLMKSLEDLSSAYDGTVRSSNSDVVQFVYGDDGLDPTYMEGDGQAVE 914
Query: 1032 FCYG-----EDGVDVHQTSFISKFDALAARERGRGRGR-----NKFCDKGSHTFVMGRNQ 1081
F D H ++ + ++ + R + N+ + TFV+
Sbjct: 915 FKRTWIHSVNLNYDRHDSAMLP-YEIIDYVNRALDDPKFLTNCNRDFIETIRTFVI---- 969
Query: 1082 EMIYKKCSGQLDASN-AYIMELPDALKDNAEKFADKFLS-------------NEMAKQDF 1127
E I K + + + A ++E PD + D + D+F E + F
Sbjct: 970 ENIAKYLASVRERRDLAPMLEEPD-MDDLDDMEGDEFAPVAKRKSVENIIRVTEKQLRSF 1028
Query: 1128 LKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 1187
+ K++ + +PG VG + +QS+GEP TQMTL TFH AG TLG+PR++EI+
Sbjct: 1029 VDRCWEKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAA-QTTLGVPRIKEII 1087
Query: 1188 TIASKDIKTPVITCPLL 1204
A+K I TP+IT L+
Sbjct: 1088 N-AAKTISTPIITGQLI 1103
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
C TCG+ C GHFG++ L +PV++ F T+L+ IC C S +E + ++
Sbjct: 66 CATCGESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDCSSVLLSDQEKRQFLKD 125
Query: 61 L 61
L
Sbjct: 126 L 126
>sp|P31813|RPOA1_THECE DNA-directed RNA polymerase subunit A' OS=Thermococcus celer GN=rpoA1
PE=3 SV=1
Length = 905
Score = 354 bits (908), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 265/826 (32%), Positives = 396/826 (47%), Gaps = 155/826 (18%)
Query: 242 LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
++PS+V+D +EK+ + + L ++ KA L V+ VPP+ R PS
Sbjct: 181 MMPSEVRDRLEKIPDRDLPLIGLDAE--------KARPEWMVLTVLPVPPVTMR-PSITL 231
Query: 302 DSVM--EHPQTVLLSKVLQANIYL-ANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAA 358
+S + E T L +++ N L +N P +I W LQ V + + +
Sbjct: 232 ESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQ--LIIEDLWDLLQYHVTTYINNETSG 289
Query: 359 -------GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
R + + + Q L+ KEG FR L GKRVN++ R+VISPDP +++NE+G+P
Sbjct: 290 IPPAKHKSGRPLKT-LSQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPMA 348
Query: 412 FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRI------S 465
A+ LT PE+VT +N KLR ++NG E +PGA + +D P +++R+ +
Sbjct: 349 IAMELTVPEKVTEFNFEKLRKMVLNGPEKYPGANYVID-------PEGRRIRLMENNLET 401
Query: 466 IGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLK 525
+ KLD G V RHL DGDVVL NRQP+LH+ SIMAH VRV+
Sbjct: 402 VAEKLDI-----------------GWTVERHLLDGDVVLFNRQPSLHRMSIMAHRVRVMP 444
Query: 526 GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSL 585
+T R++ + C YNADFDGDEMN+H PQ E ++AEA ++ N + P G PL +
Sbjct: 445 -YRTFRLNLSVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAG 503
Query: 586 IQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPL 645
IQDHI LLT++ + R E Q+L +GV L
Sbjct: 504 IQDHISGGYLLTREGAYFERTEVEQMLMFAGVDVDRL----------------------- 540
Query: 646 LPAIWKPEP--------LWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADK 697
PEP LW+GK + + + LP+D T + +K
Sbjct: 541 ------PEPDKVENGVELWSGKTIFSLL------------------LPKDL--TIWYRNK 574
Query: 698 QSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKL-LIYK 756
D + G+ K+ ++K +E V + L+ + I
Sbjct: 575 LCD----EPGRCEALEKLIEEKLIPDEEEV-----------------RALAYDGFTYILN 613
Query: 757 NDLVRGVIDKAQFA--DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
L+ G IDK + D L+ + YG A L +++L + GFT +DD
Sbjct: 614 GKLLSGAIDKTAYGREDGKLLDIIVREYGVERARQFLDQVTKLAIWVITHKGFTTAIDDE 673
Query: 815 LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
+ + + + +EE R+ +E E++PI K+ +E+ + AA+A
Sbjct: 674 DLPTEALDRIREIIREAEERVNRL----IEAYRNGELEPIPGKT-LEETLESKIMAALAE 728
Query: 875 FDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQ 934
+ + V L N +M +GA+G +N Q+++ LGQQ
Sbjct: 729 ---------ARDNAGKVAERYLGMS-------NHAVIMAKTGARGKILNITQMAAMLGQQ 772
Query: 935 ELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTA 994
+ GKR+ R + L F P D RA GF+I+ + +GL PQEY+FH M GREGLVDTA
Sbjct: 773 SIRGKRLYRGYRERVLTHFKPGDLGARARGFVINSYKSGLTPQEYFFHAMGGREGLVDTA 832
Query: 995 VKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
V+T++SGY+QR LI L+ LK+ YD +VRD G IVQF YGEDG+D
Sbjct: 833 VRTAQSGYMQRRLINALQDLKVEYDGTVRDPTGIIVQFRYGEDGID 878
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
C+TCG R CPGHFGH++L PV + ++ +L+ C C K + E+E+ K
Sbjct: 60 CETCGARAGECPGHFGHVELARPVIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYFHK 119
Query: 61 LEL 63
E+
Sbjct: 120 FEV 122
>sp|P04051|RPC1_YEAST DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO31 PE=1
SV=1
Length = 1460
Score = 350 bits (898), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 238/731 (32%), Positives = 366/731 (50%), Gaps = 133/731 (18%)
Query: 325 NAYVNQPDNAKVIVARWMNLQQSVN--VLFDGKNAAGQRDMASGICQLLEKKEGLFRQKL 382
N + D ++ VA ++N SVN +L N G+ G CQ L+ K+G FR L
Sbjct: 310 NNMMEHWDYLQLTVAMYIN-SDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNL 368
Query: 383 MGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHP 442
GKRV+++ R+VISPDP L+++E+ +P A LTYPE+VT +N KL++ I+NG +HP
Sbjct: 369 SGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHP 428
Query: 443 GATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDV 502
GA + L + R R+ + + L G +V RHL+DGDV
Sbjct: 429 GANYLLKRNEDARRNLRYGDRMKLAKNLQI-----------------GDVVERHLEDGDV 471
Query: 503 VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAE 562
VL NRQP+LH+ SI++H ++ + +T R++ C+ YNADFDGDEMN+H PQ E +RAE
Sbjct: 472 VLFNRQPSLHRLSILSHYAKI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAE 530
Query: 563 AYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGL 622
A N++ N + P +G+P+ + QD I + L++ KD+F +R QLL + S G+
Sbjct: 531 AINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLL---SMMSDGI 587
Query: 623 GSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL--NHITRGRPPFVVER 680
F P PAI KP LWTGKQV + ++ NH P V+
Sbjct: 588 EHFDIPP-----------------PAIMKPYYLWTGKQVFSLLIKPNH----NSPVVI-- 624
Query: 681 GGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKN 740
N D K K V K +
Sbjct: 625 -------------NLD------------------------AKNKVFVPPK---------S 638
Query: 741 KSKEKELSEEK--LLIYKNDLVRGVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALS 795
KS E+S+ ++I + ++ GV+DK+ D + + +T+ YG A ++ ++
Sbjct: 639 KSLPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMA 698
Query: 796 RLFTVFLQMHGFTCGVDDLLILKDKERERKNHL----HGSEEIGKRVHLEALELEDGAEI 851
+L FL GF+ G++D+ D +++++ + H +E+ + LE + G
Sbjct: 699 KLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYHKCDELITLFNKGELETQPGCN- 757
Query: 852 DPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWIS- 910
+ + +A GG + S++ + INEL NW +
Sbjct: 758 -----EEQTLEAKIGG-----------LLSKVREEVGDVCINEL----------DNWNAP 791
Query: 911 -LMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDR 969
+M T G+KGS +N Q+ + +GQQ + G RVP ++LP F P++ GF+ +
Sbjct: 792 LIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNS 851
Query: 970 FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSI 1029
F +GL P E+ FH ++GREGLVDTAVKT+ +GY+ R L+K+LE L YD +VR + I
Sbjct: 852 FFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSANGI 911
Query: 1030 VQFCYGEDGVD 1040
VQF YG DG+D
Sbjct: 912 VQFTYGGDGLD 922
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 66/103 (64%), Gaps = 4/103 (3%)
Query: 1102 LPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQM 1161
+PD +K + + + +E + + FL++ K+ + +PG +G + +QS+GEP TQM
Sbjct: 1048 VPDNVKTSVSQL---YRISEKSVRKFLEIALFKYRKARLEPGTAIGAIGAQSIGEPGTQM 1104
Query: 1162 TLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
TL TFH AG MNVTLG+PR++EI+ ASK I TP+I L+
Sbjct: 1105 TLKTFHFAGVASMNVTLGVPRIKEIIN-ASKVISTPIINAVLV 1146
Score = 40.4 bits (93), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
C TC C GHFGH+ L +PV++ F +L+ IC C
Sbjct: 67 CATCHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNC 110
>sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium
discoideum GN=polr2a PE=2 SV=2
Length = 1727
Score = 341 bits (874), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 220/679 (32%), Positives = 338/679 (49%), Gaps = 130/679 (19%)
Query: 367 ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
I Q L+ KEG R LMGKRV+++ R+VI+ DP L+++++G+P AL LTYPE VTP+N
Sbjct: 330 IRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFN 389
Query: 427 VVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDN 486
+ K+R+ I NG HPGA + + + D +R + K SD
Sbjct: 390 IDKMRELIRNGPSEHPGAKYII--------------------REDGTRFDLRFVKKVSDT 429
Query: 487 EFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFD 545
E G V RH+ DGDVV+ NRQP+LHK S+M H ++V+ T R++ + S YNADFD
Sbjct: 430 HLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMP-YSTFRLNLSVTSPYNADFD 488
Query: 546 GDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNR 605
GDEMN+H PQ +RAE I+ Q V P + P+ ++QD ++ + L TK+D F+ +
Sbjct: 489 GDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEK 548
Query: 606 DEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAV 665
D +L L S+ GK V P PAI KP+ LWTGKQ+ + +
Sbjct: 549 DLVMNILM-------WLPSWDGK-------------VPP--PAILKPKQLWTGKQLFSLI 586
Query: 666 LNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKE 725
+ I L + H DK
Sbjct: 587 IPDI--------------------------------------NLIRFTSTHNDK------ 602
Query: 726 VVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYG 783
+ E + +++I + +L+ G++ K A+ ++H V +G
Sbjct: 603 ---------------EPNECSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHG 647
Query: 784 SNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEAL 843
+T + + +L GFT G+ D + +V L
Sbjct: 648 HDTCRLFIDQTQTVVNHWLINRGFTMGIGDTI--------------ADSATMAKVTLTIS 693
Query: 844 ELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNK--HTSSSVINELLSEGLL 901
++ ++ + +K++ ++ G + + F+ K+ LNK T+ S + LSE
Sbjct: 694 SAKN--QVKELIIKAQNKQFECQPGKSVIETFEQKVNQVLNKARDTAGSSAQDSLSE--- 748
Query: 902 KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 961
N + M T+G+KGS +N Q+ + +GQQ +EGKR+P +TLP F D+ P
Sbjct: 749 ----DNNLKAMVTAGSKGSFINISQMMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPE 804
Query: 962 AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1021
+ GF+ + +L GL PQE++FH M GREGL+DTAVKTS +GY+QR L+K +E + I YD +
Sbjct: 805 SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDAT 864
Query: 1022 VRDADGSIVQFCYGEDGVD 1040
VR++ G ++QF YGEDG+D
Sbjct: 865 VRNSLGDVIQFAYGEDGID 883
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 68/96 (70%), Gaps = 6/96 (6%)
Query: 1113 FADKFLSNE--MAKQDFLKL---VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFH 1167
FA K + E + ++ FL + ++ KF+ +LA PGE VG LA+QS+GEP+TQMTLNTFH
Sbjct: 1045 FASKRVLTEFRLTEKAFLWVCGEIESKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFH 1104
Query: 1168 LAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
AG NVTLG+PRL+EI+ IA K +KTP +T L
Sbjct: 1105 YAGVSSKNVTLGVPRLKEIINIA-KQVKTPSLTIYL 1139
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
C+TC CPGHFGHI+L PV++ + + +L+ +C+ C
Sbjct: 66 CQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHC 109
>sp|Q6BI69|RPC1_DEBHA DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC
2968) GN=RPC1 PE=3 SV=2
Length = 1457
Score = 337 bits (864), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 228/767 (29%), Positives = 379/767 (49%), Gaps = 125/767 (16%)
Query: 286 VVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQANI---YLANAYVNQPDNAKVIVARWM 342
V + P + S D ++ + V S +++A I N + Q D ++ VA ++
Sbjct: 265 VCIRPSVMMDAQSNEDDLTIKLTEIVWTSSLIKAGIEKGISINNLMEQWDYLQLSVAMYI 324
Query: 343 NLQQSVNVLFDGKNAAGQRDM-ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYL 401
N + L + G CQ L+ K+G FR L GKRV+++ R+VISPDP L
Sbjct: 325 NSDSANPALLPSSGGGSKSSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNL 384
Query: 402 AVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKK 461
++E+ +P A LTYPE+ T +N KL+ I++G +HPGA + L + + +
Sbjct: 385 KIDEVAVPDRVAKVLTYPEKCTRYNRKKLQKLILSGPNVHPGANYLLKQNESAKRNLRFG 444
Query: 462 MRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVV 521
R+ + + L G +V RH++DGD+VL NRQP+LH+ SI++H
Sbjct: 445 DRVKLAKNLHI-----------------GDVVERHIEDGDIVLFNRQPSLHRLSILSHYA 487
Query: 522 RVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDP 581
++ + +T R++ C+ YNADFDGDEMN+H PQ E +RAEA N++ N + P +G+P
Sbjct: 488 KI-RPWRTFRLNECVCTPYNADFDGDEMNIHVPQTEEARAEAINLMGVKNNLLTPKSGEP 546
Query: 582 LRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQE 641
+ + QD I + L++ KD+F +R QLL ++S ++ +
Sbjct: 547 IIAATQDFITGSYLVSHKDSFFDRASLVQLL--------------------CMMSDADIQ 586
Query: 642 VLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDR 701
PAI+KP LWTGKQV + ++ + ++
Sbjct: 587 FDIPPPAIFKPVMLWTGKQVFSLLI-------------------------------KPNK 615
Query: 702 KKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVR 761
K N L NK + + +G P E ++ ++I + ++
Sbjct: 616 KSNVVINLDAKNKTYTPPA-------KGFPNEMSP-----------NDGFVIIRGSQILS 657
Query: 762 GVIDKAQFAD---YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILK 818
GV+DK+ D + + +T+ YG + A ++ +++L +L GF+ G++D++
Sbjct: 658 GVMDKSTLGDGKKHSVFYTILRDYGPDEAANAMNRMAKLCARYLGNRGFSIGINDVIPGS 717
Query: 819 DKERERKNHLHGSEEIGKRVHLEALELED-----GAEIDPIKLKSEIEKAMRGGGDAAVA 873
D ++++ E + ++ +L+ EL D E P + + +A GG
Sbjct: 718 DLKQKK-------ELMVEQAYLKCDELIDLYNRGNLETQPGCNEEQTLEAKIGG------ 764
Query: 874 YFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQ 933
+ S++ + INEL S N +M T G+KGS +N Q+ + +GQ
Sbjct: 765 -----LLSKVREEVGEICINELDS--------ANAPLIMATCGSKGSTLNVSQMVAVVGQ 811
Query: 934 QELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDT 993
Q + G RVP ++LP F P++ GF+ + F +GL P E+ FH ++GREGLVDT
Sbjct: 812 QIISGNRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLTPPEFLFHSISGREGLVDT 871
Query: 994 AVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
AVKT+ +GY+ R L+K+L+ L YD++VR++ IVQF YG DG+D
Sbjct: 872 AVKTAETGYMSRRLMKSLDDLSAQYDHTVRNSSNGIVQFTYGGDGLD 918
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
FL+ +K+ + +PG VG + +QS+GEP TQMTL TFH AG MNVTLG+PR++EI
Sbjct: 1062 FLEQCIYKYSRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI 1121
Query: 1187 LTIASKDIKTPVITCPLL 1204
+ ASK I TP+I L+
Sbjct: 1122 IN-ASKVISTPIINSVLV 1138
Score = 40.8 bits (94), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
C TC C GHFGHI L +PV++ F +L+ IC C
Sbjct: 67 CATCHGNLASCHGHFGHIKLALPVFHVGYFKATIQVLQCICKNC 110
>sp|P11512|RPOA1_SULAC DNA-directed RNA polymerase subunit A' OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoA1 PE=3 SV=2
Length = 880
Score = 336 bits (862), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 267/827 (32%), Positives = 405/827 (48%), Gaps = 147/827 (17%)
Query: 228 PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
P F ++++ L PS+++D +E++ +++ EL G+ K+ + + V
Sbjct: 161 PYNFNEERNGSIVKLSPSEIRDRLERIPDSDVELL---------GYDPKSSRPEWMILTV 211
Query: 288 L-VPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNL 344
L VPPI R PS +S + E T L +++ N L + + +I W L
Sbjct: 212 LPVPPITIR-PSITIESGIRAEDDLTHKLVDIIRLNERLKES-IEAGAPQLIIEDLWDLL 269
Query: 345 QQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPD 398
Q V FD G A R + Q L+ KEG FR L GKRV+++ R+VISPD
Sbjct: 270 QYHVATYFDNEIPGLPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPD 329
Query: 399 PYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPP 458
P L+++E+GIP A LT PERVT N+ ++R IING + PGA + + P
Sbjct: 330 PNLSIDEVGIPYTIARMLTVPERVTNINIERIRQYIINGPDKWPGANYVIK--------P 381
Query: 459 NKKMRISIGRKLDTSRGAIVQPGKDSDNEF-EGKMVYRHLQDGDVVLVNRQPTLHKPSIM 517
+ GR++D V+ K+ + G +V RHL DGDVVL NRQP+LH+ S+M
Sbjct: 382 D-------GRRIDLR---YVKDRKELASSITAGYVVERHLVDGDVVLFNRQPSLHRISMM 431
Query: 518 AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
AH VRVL G +T R++ +C YNADFDGDEMN+H PQ E + AEA ++ + + P
Sbjct: 432 AHKVRVLPG-RTFRLNLLDCPPYNADFDGDEMNLHVPQSEEAIAEARELMLVHKNIITPR 490
Query: 578 NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISR 637
G P+ QD+I A LL+ K T L +E +L G+ F G+ G+
Sbjct: 491 YGGPIIGGGQDYISGAYLLSVKTTLLTVEEVATIL--------GVTDFVGELGE------ 536
Query: 638 SEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADK 697
PAI P+P +TGKQVI+ LP+DF F+
Sbjct: 537 ---------PAILAPKPYYTGKQVISLF------------------LPKDF---NFHG-- 564
Query: 698 QSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKN 757
+SK + KD+ + ++ KN
Sbjct: 565 --------PANISKGPRACKDEI--------------------------CPHDSFIVIKN 590
Query: 758 D-LVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDD 813
L+ GV DK + ++H YG+ L+ + ++F FL+M GFT ++D
Sbjct: 591 GLLLEGVFDKKAIGNQQPESMLHWSIREYGTEYGKWLMDNVFKMFIRFLEMRGFTMTLED 650
Query: 814 LLILKDKERERKNHL-HGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
+ I + + E + G ++ + + + +G +++PI ++ IE+++
Sbjct: 651 ITIPDEAQNEITTKIKEGYSQVDEYIR----KFNEG-QLEPIPGRT-IEESLES------ 698
Query: 873 AYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
+ + +L K V E+ ++ L P N + +M +GA+GS++N Q+++ LG
Sbjct: 699 --YILDTLDKLRK-----VAGEIATK-YLDPF--NNVYIMAITGARGSELNITQMTALLG 748
Query: 933 QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
QQ + G+R+ R +TL F D AP A GF+ + F+ GL P E +FH GREGLVD
Sbjct: 749 QQSVRGERIRRGYRERTLSLFKYGDIAPEARGFVKNSFMRGLSPYEMFFHAAGGREGLVD 808
Query: 993 TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
TAVKTS+SGY+QR LI L L+I YD +VR G IVQ YG+D V
Sbjct: 809 TAVKTSQSGYMQRRLINALSDLRIEYDGTVRSLYGDIVQVVYGDDAV 855
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVR 59
C CG CPGHFGHI+L+ PV + +Y L+ C+ C K +++E+ R
Sbjct: 58 CPVCGNTLAGCPGHFGHIELIKPVIHIGYVKHIYDFLRSTCWRCGRIKIKEQDLERYKR 116
>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana
GN=RPB205 PE=1 SV=3
Length = 1839
Score = 336 bits (861), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 240/709 (33%), Positives = 345/709 (48%), Gaps = 132/709 (18%)
Query: 344 LQQSVNVLFD----GKNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
LQ + FD G+ A Q+ IC L+ KEG R LMGKRV+++ R+VI+P
Sbjct: 307 LQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 366
Query: 398 DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
DP + ++E+G+P AL LTYPE VTP+N+ +L++ + G HP P
Sbjct: 367 DPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGP--HP--------------P 410
Query: 458 PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSI 516
P K I R D R + K SD E G V RHLQDGD VL NRQP+LHK SI
Sbjct: 411 PGKTGAKYIIRD-DGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSI 469
Query: 517 MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
M H +R++ T R++ + S YNADFDGDEMN+H PQ +RAE ++ V P
Sbjct: 470 MGHRIRIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 528
Query: 577 SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
P+ ++QD ++ +TK+DTF+ +D F L F GK
Sbjct: 529 QANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLM-------WWEDFDGK-------- 573
Query: 637 RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
+P PAI KP PLWTGKQ V N I +P+ R++A
Sbjct: 574 ------VPA-PAILKPRPLWTGKQ----VFNLI--------------IPKQINLLRYSA- 607
Query: 697 KQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYK 756
H D E PG+ + + I +
Sbjct: 608 ------------------WHADT-----ETGFITPGDTQ----------------VRIER 628
Query: 757 NDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDL 814
+L+ G + K ++ LVH + E G + A L L +L +GFT G+ D
Sbjct: 629 GELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTIGIGDT 688
Query: 815 LILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAY 874
I E+ N + + + + + G E+DP E + MR
Sbjct: 689 -IADSSTMEKINETISNAKTAVKDLIRQFQ---GKELDP-----EPGRTMRDT------- 732
Query: 875 FDMKMTSQLNK--HTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLG 932
F+ ++ LNK + S + L+E N + M T+G+KGS +N Q+++ +G
Sbjct: 733 FENRVNQVLNKARDDAGSSAQKSLAE-------TNNLKAMVTAGSKGSFINISQMTACVG 785
Query: 933 QQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVD 992
QQ +EGKR+P G+TLP F D+ P + GF+ + +L GL PQE++FH M GREGL+D
Sbjct: 786 QQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 845
Query: 993 TAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDV 1041
TAVKTS +GY+QR L+K +E + + YD +VR++ G ++QF YGEDG+D
Sbjct: 846 TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 894
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Query: 1131 VKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIA 1190
++ +F+ SL PGE +G +A+QS+GEP+TQMTLNTFH AG NVTLG+PRL+EI+ +A
Sbjct: 1069 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1128
Query: 1191 SKDIKTPVITCPL 1203
K IKTP ++ L
Sbjct: 1129 -KRIKTPSLSVYL 1140
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
C+TC CPGHFG+++L P+Y+ + ++++ +CF C A E
Sbjct: 66 CETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEE 118
>sp|Q980R2|RPOA1_SULSO DNA-directed RNA polymerase subunit A' OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoA1
PE=1 SV=1
Length = 880
Score = 333 bits (854), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 268/829 (32%), Positives = 410/829 (49%), Gaps = 151/829 (18%)
Query: 228 PSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVV 287
P F +++ L PSD+++ +EK+ +++ E+ + + + L V+
Sbjct: 161 PYNFYEERKEGVAKLTPSDIRERLEKIPDSDVEILGYDPTTSRPEW--------MILTVL 212
Query: 288 LVPPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQ 345
VPPI R PS +S + E T L +++ N L + ++ +I W LQ
Sbjct: 213 PVPPITIR-PSIMIESGIRAEDDLTHKLVDIVRINERLKES-IDAGAPQLIIEDLWDLLQ 270
Query: 346 QSVNVLFD--------GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
V FD K+ +G R + + + Q L+ KEG FR L GKRV+++ R+VISP
Sbjct: 271 YHVATYFDNEIPGLPPSKHRSG-RPLRT-LAQRLKGKEGRFRGNLSGKRVDFSSRTVISP 328
Query: 398 DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
DP ++++E+G+P A LT PER+TPWN+ KLR +ING + PGA + +
Sbjct: 329 DPNISIDEVGVPEIIAKTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIR-------- 380
Query: 458 PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSI 516
P+ GR++D V+ K+ + G ++ RHL DGD+VL NRQP+LH+ S+
Sbjct: 381 PD-------GRRIDLR---YVKDRKELASTLAPGYIIERHLIDGDIVLFNRQPSLHRISM 430
Query: 517 MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
MAH VRVLKG T R++ C YNADFDGDEMN+H PQ E + AEA I+ + + P
Sbjct: 431 MAHRVRVLKG-LTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITP 489
Query: 577 SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
G P+ QD+I A LLT K T L ++E Q+L GV+ V I
Sbjct: 490 RYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQIL---GVAD-------------VKID 533
Query: 637 RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDF-FKTRFNA 695
E PAI P +TGKQVI+A LP+DF F + N
Sbjct: 534 LGE-------PAILAPREYYTGKQVISAF------------------LPKDFNFHGQANV 568
Query: 696 DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
KN+ + + ++
Sbjct: 569 SSGPRLCKNE----------------------------------------DCPHDSYVVI 588
Query: 756 KND-LVRGVIDKAQFADY---GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
KN L+ GV DK + ++H + + Y L+ L R+F F+++ GFT +
Sbjct: 589 KNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRL 648
Query: 812 DDLLILKDKERERKNHLHGSEEIGKRVHLEAL-ELEDGAEIDPIKLKSEIEKAMRGGGDA 870
+D+ + D ++E N + + +V ++ L + E++PI ++ +E+++
Sbjct: 649 EDVSLGDDVKKEIYNEIDRA-----KVEVDNLIQKYKNGELEPIPGRT-LEESLEN---- 698
Query: 871 AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
+ L+K S++ ++ S+ L P N+ +M +GA+GS +N Q+++
Sbjct: 699 -------YILDTLDKLRSTA--GDIASK-YLDPF--NFAYVMARTGARGSVLNITQMAAM 746
Query: 931 LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
LGQQ + G+R+ R +TLP F P+D +P A GFI F TGL+P E +FH GREGL
Sbjct: 747 LGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGREGL 806
Query: 991 VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
VDTAV+TS+SGY+QR LI L L+ YD +VR G +VQ YG+DGV
Sbjct: 807 VDTAVRTSQSGYMQRRLINALSDLRAEYDGTVRSLYGEVVQVAYGDDGV 855
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 38/75 (50%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
C TCG CPGHFGHI+LV PV + L +Y LK C C K S E+EK R
Sbjct: 58 CPTCGNTLGNCPGHFGHIELVRPVIHVGLVKHIYEFLKATCRRCGRVKISEDEIEKYSRI 117
Query: 61 LELIIKGDIIAAKSL 75
I K AA+ L
Sbjct: 118 YNAIKKRWPSAARRL 132
>sp|P08968|RPC1_TRYBB DNA-directed RNA polymerase III subunit RPC1 OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 1530
Score = 327 bits (838), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 241/779 (30%), Positives = 367/779 (47%), Gaps = 146/779 (18%)
Query: 282 FFLGVVLVPPIKFR-LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVAR 340
+ +LVPP+ R G +V + T + +L + + + ++ A
Sbjct: 258 LLMTTLLVPPVPVRPRGCAGTTTVRDDDLTAQYNDILVSTDTMQDGSLD----ATRYTET 313
Query: 341 WMNLQQSVNVLFDGKNAAGQRDMASG----ICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
W LQ L D ++ + Q L+ K G FR L GKRV+Y+ RSVIS
Sbjct: 314 WEMLQMRAARLLDSSLPGFPPNVRTSDLKSYAQRLKSKHGRFRCNLSGKRVDYSGRSVIS 373
Query: 397 PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATH-YLDKLSTMR 455
PDP L V+E+ +P + A LTYP+RV N +R + NG +HPGAT YL + + +
Sbjct: 374 PDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRLVRNGPHVHPGATTVYLAQEGSKK 433
Query: 456 LPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPS 515
N++ R + +L G +V RH+ +GD+VL NRQP+LH+ S
Sbjct: 434 SLKNERDRHRLAARLAV-----------------GDIVERHVMNGDLVLFNRQPSLHRVS 476
Query: 516 IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVR 575
+MAH RVL +T R + C+ YNADFDGDEMNVHF Q E +RAEA +++ +
Sbjct: 477 MMAHRARVLPF-RTFRFNECCCAPYNADFDGDEMNVHFVQTEKARAEALQLMSTARNIIS 535
Query: 576 PSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLI 635
NG+P+ + QD + +A L+T +D F +R EF Q++ S LG T
Sbjct: 536 AKNGEPIIACTQDFLAAAYLVTSRDVFFDRGEFSQMV------SHWLGPVT--------- 580
Query: 636 SRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNA 695
Q LP +PAI KP LWTGKQ + I R P V + P F+ TR
Sbjct: 581 ----QFRLP-IPAILKPVELWTGKQ----LFELIVRPSPEVDVLLSFEAPTKFY-TR--- 627
Query: 696 DKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIY 755
KGK + +EE + +
Sbjct: 628 ----------KGK------------------------------------HDCAEEGYVAF 641
Query: 756 KND-LVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGV 811
+ + G +DK A GL + + G ++S +++ + +L +GF+ G+
Sbjct: 642 LDSCFISGRLDKKLLGGGAKDGLFARLHTIAGGGYTARVMSRIAQFTSRYLTNYGFSLGL 701
Query: 812 DDLLILKDKERERKNHLHGSEEI----------GKRVHLEALELEDGAEIDPIKLKSEIE 861
D+ + +++ L S E+ G+ + L L ++ E +L +E+
Sbjct: 702 GDVAPTPELNKQKAAVLARSVEVCDGLIKSAKTGRMIPLPGLTVKQSLE---ARLNTELS 758
Query: 862 KAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSK 921
K G AAV L+ H ++ +I M SG+KGS
Sbjct: 759 KVRDECGTAAV--------QTLSIHNNTPLI-------------------MVQSGSKGSA 791
Query: 922 VNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYF 981
+N Q+ + +GQQ + GKR+ ++LP FH ++ AP A GF+ + F +GL P E++F
Sbjct: 792 LNIAQMMACVGQQTVSGKRILDAFQDRSLPHFHRFEEAPAARGFVANSFYSGLSPTEFFF 851
Query: 982 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
H MAGREGLVDTAVKT+ +GY+ R L+K +E L + YD +VR+ G ++Q +GEDG+D
Sbjct: 852 HTMAGREGLVDTAVKTAETGYIYRRLMKAMENLSVRYDGTVRNTKGDVIQLRFGEDGLD 910
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
F+ K++ +PG P G +A+QSVGEPSTQMTL TFH AG M++T G+PRL E+
Sbjct: 1126 FIAQCASKYLRKACEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQGVPRLVEV 1185
Query: 1187 LTIASKDIKTPVITCPLLV 1205
+ A+++I TPV+T P+L+
Sbjct: 1186 IN-ANRNIATPVVTAPVLL 1203
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
C+TCG C GH GHIDL PV++ F + + + IC C H E++ R+
Sbjct: 74 CETCGLNSIECVGHPGHIDLEAPVFHLGFFTTVLRICRTICKRCSHVLLDDTEIDYYKRR 133
Query: 61 L 61
L
Sbjct: 134 L 134
>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb1 PE=1 SV=1
Length = 1752
Score = 326 bits (835), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 243/767 (31%), Positives = 368/767 (47%), Gaps = 142/767 (18%)
Query: 298 SKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV-IVARWMNLQQSVNVLFDGKN 356
S G S E T LS +++AN AN + + A IV+ + L Q +
Sbjct: 257 SVDGTSRGEDDLTHKLSDIIKAN---ANVRRCEQEGAPAHIVSEYEQLLQFHVATYMDNE 313
Query: 357 AAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGI 408
AGQ R + S I L+ KEG R LMGKRV+++ R+VI+ DP L+++E+G+
Sbjct: 314 IAGQPQALQKSGRPLKS-IRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDELGV 372
Query: 409 PPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGR 468
P A LTYPE VTP+N+ +L++ + NG + HPGA + + G
Sbjct: 373 PRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYIIR---------------DTGE 417
Query: 469 KLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK 528
++D + D + G V RH++DGDVV+ NRQP+LHK S+M H +RV+
Sbjct: 418 RIDLRYH---KRAGDIPLRY-GWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMP-YS 472
Query: 529 TLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQD 588
T R++ + S YNADFDGDEMN+H PQ E +RAE I Q V P + P+ ++QD
Sbjct: 473 TFRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQD 532
Query: 589 HIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPA 648
+ + +D FL R+ ++ L +LP P
Sbjct: 533 TLAGVRKFSLRDNFLTRNAVMNIM---------------------LWVPDWDGILPP-PV 570
Query: 649 IWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
I KP+ LWTGKQ+++ ++ +G L +D DKQS D G
Sbjct: 571 ILKPKVLWTGKQILS------------LIIPKGINLIRD-------DDKQSLSNPTDSG- 610
Query: 709 LSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQ 768
+LI +++ GV+DK
Sbjct: 611 -------------------------------------------MLIENGEIIYGVVDKKT 627
Query: 769 F--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKN 826
+ GLVHT+ + G + + R+ +L +GF+ G+ D + D +E
Sbjct: 628 VGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMKEVTR 687
Query: 827 HLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKH 886
+ K + E A+ + +LK E +R +A V+ ++ +Q +
Sbjct: 688 TV-------KEARRQVAECIQDAQHN--RLKPEPGMTLRESFEAKVS----RILNQARDN 734
Query: 887 TSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVS 946
S +E LK + N + M +G+KGS +N Q+S+ +GQQ +EGKR+P
Sbjct: 735 AGRS------AEHSLKDS--NNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFK 786
Query: 947 GKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRC 1006
+TLP F D +P + GFI + +L GL PQE++FH MAGREGL+DTAVKT+ +GY+QR
Sbjct: 787 YRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRR 846
Query: 1007 LIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDAL 1053
L+K +E + + YD +VR+A G I+QF YGEDG+D + FD+L
Sbjct: 847 LVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEY-QVFDSL 892
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
N++A + + V+ +F ++ PGE VG LA+QS+GEP+TQMTLNTFH AG NVTLG
Sbjct: 1041 NKVAFEWIMGEVEARFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLG 1100
Query: 1180 IPRLQEILTIASKDIKTPVITCPLL 1204
+PRL+EIL +A K+IKTP +T L+
Sbjct: 1101 VPRLKEILNVA-KNIKTPSLTIYLM 1124
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFK 48
C+TCG+ CPGHFGHI+L PV++ + + +L+ +C+ C K
Sbjct: 69 CQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLK 116
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens GN=POLR2A
PE=1 SV=2
Length = 1970
Score = 313 bits (802), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)
Query: 242 LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
L P V +I +++ + E F+ M+ + A + V+ VPP+ R P+
Sbjct: 216 LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266
Query: 300 GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
G + + T L+ +++ N L N A VI LQ V + D +
Sbjct: 267 QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325
Query: 360 QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
R M + Q L+ KEG R LMGKRV+++ R+VI+PDP L+++++G+P A
Sbjct: 326 PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 414 LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
+T+ E VTP+N+ +L++ + G +PGA + + D++ P + + G K
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 470 LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
++ RH+ DGD+V+ NRQPTLHK S+M H VR+L T
Sbjct: 446 VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481
Query: 530 LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
R++ + + YNADFDGDEMN+H PQ +RAE + V P + P+ ++QD
Sbjct: 482 FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541
Query: 590 IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
+ + TK+D FL R E LL L ++ GK Q PAI
Sbjct: 542 LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579
Query: 650 WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
KP PLWTGKQ+ + ++ HI
Sbjct: 580 LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 601
Query: 709 LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
+T+ H D SG K + G + K+++ +L+ G++ K
Sbjct: 602 CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642
Query: 767 AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
LVH G + S + + +L + G T G+ D + ++
Sbjct: 643 KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702
Query: 825 KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
+N + + K+ +E +E E++P G+ F+ ++ LN
Sbjct: 703 QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746
Query: 885 --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
+ + S + LSE N M SGAKGSK+N Q+ + +GQQ +EGKR+P
Sbjct: 747 DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799
Query: 943 RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
+TLP F D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800 FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859
Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
+QR LIK++E + + YD +VR++ +VQ YGEDG+ F
Sbjct: 860 IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
+ + A++F + A L ++ KF ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110
Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
G NVTLG+PRL+E++ I SK KTP +T LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144
Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
C+TC CPGHFGHI+L PV++ +L+ +CFFC
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus GN=Polr2a
PE=1 SV=3
Length = 1970
Score = 313 bits (802), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 238/824 (28%), Positives = 375/824 (45%), Gaps = 155/824 (18%)
Query: 242 LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--K 299
L P V +I +++ + E F+ M+ + A + V+ VPP+ R P+
Sbjct: 216 LSPERVHEIFKRISDEE----CFVLGMEP----RYARPEWMIVTVLPVPPLSVR-PAVVM 266
Query: 300 GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAG 359
G + + T L+ +++ N L N A VI LQ V + D +
Sbjct: 267 QGSARNQDDLTHKLADIVKINNQLRRNEQNG-AAAHVIAEDVKLLQFHVATMVDNELPGL 325
Query: 360 QRDMASG------ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 413
R M + Q L+ KEG R LMGKRV+++ R+VI+PDP L+++++G+P A
Sbjct: 326 PRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIA 385
Query: 414 LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL----DKLSTMRLPPNKKMRISIGRK 469
+T+ E VTP+N+ +L++ + G +PGA + + D++ P + + G K
Sbjct: 386 ANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYK 445
Query: 470 LDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKT 529
++ RH+ DGD+V+ NRQPTLHK S+M H VR+L T
Sbjct: 446 VE-----------------------RHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW-ST 481
Query: 530 LRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDH 589
R++ + + YNADFDGDEMN+H PQ +RAE + V P + P+ ++QD
Sbjct: 482 FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT 541
Query: 590 IVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAI 649
+ + TK+D FL R E LL L ++ GK Q PAI
Sbjct: 542 LTAVRKFTKRDVFLERGEVMNLLMF-------LSTWDGKVPQ---------------PAI 579
Query: 650 WKPEPLWTGKQVITAVL-NHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGK 708
KP PLWTGKQ+ + ++ HI
Sbjct: 580 LKPRPLWTGKQIFSLIIPGHI--------------------------------------N 601
Query: 709 LSKTNKMHKD--KSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 766
+T+ H D SG K + G + K+++ +L+ G++ K
Sbjct: 602 CIRTHSTHPDDEDSGPYKHISPG-------------------DTKVVVENGELIMGILCK 642
Query: 767 AQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERER 824
LVH G + S + + +L + G T G+ D + ++
Sbjct: 643 KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDI 702
Query: 825 KNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN 884
+N + + K+ +E +E E++P G+ F+ ++ LN
Sbjct: 703 QNTIKKA----KQDVIEVIEKAHNNELEPTP------------GNTLRQTFENQVNRILN 746
Query: 885 --KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVP 942
+ + S + LSE N M SGAKGSK+N Q+ + +GQQ +EGKR+P
Sbjct: 747 DARDKTGSSAQKSLSE-------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799
Query: 943 RMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY 1002
+TLP F D+ P + GF+ + +L GL P E++FH M GREGL+DTAVKT+ +GY
Sbjct: 800 FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859
Query: 1003 LQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSF 1046
+QR LIK++E + + YD +VR++ +VQ YGEDG+ F
Sbjct: 860 IQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEF 903
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 1110 AEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLA 1169
+ + A++F + A L ++ KF ++A PGE VG LA+QS+GEP+TQMTLNTFH A
Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110
Query: 1170 GRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLL 1204
G NVTLG+PRL+E++ I SK KTP +T LL
Sbjct: 1111 GVSAKNVTLGVPRLKELINI-SKKPKTPSLTVFLL 1144
Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
C+TC CPGHFGHI+L PV++ +L+ +CFFC
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFC 114
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
briggsae GN=rpb-1 PE=3 SV=2
Length = 1853
Score = 311 bits (796), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 236/770 (30%), Positives = 361/770 (46%), Gaps = 139/770 (18%)
Query: 286 VVLVPPIKFRLPS--KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMN 343
V+ VPP+ R P+ G + + T LS +++ N L N A V+
Sbjct: 246 VLPVPPLAVR-PAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANG-AAAHVLTDDVRL 303
Query: 344 LQQSVNVLFDG-------KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
LQ V L D G R + S I Q L+ KEG R LMGKRV+++ R+VI+
Sbjct: 304 LQYHVATLVDNCIPGLPTATQKGGRPLKS-IKQRLKGKEGRIRGNLMGKRVDFSARTVIT 362
Query: 397 PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
DP L ++ +G+P A LT+PE VTP+NV KL++ + G +PGA + + +
Sbjct: 363 ADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYIIRE------ 416
Query: 457 PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
R+ + R + +QP G V RH++DGD+++ NRQPTLHK S+
Sbjct: 417 ---NGARVDL-RYHPRAADLHLQP---------GYRVERHMKDGDIIVFNRQPTLHKMSM 463
Query: 517 MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
M H V++L T RM+ + S YNADFDGDEMN+H PQ +RAE I Q + P
Sbjct: 464 MGHRVKILPW-STFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITP 522
Query: 577 SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
P+ ++QD + + ++TK+D F++ LL L ++ GK Q
Sbjct: 523 QANKPVMGIVQDTLCAVRMMTKRDIFIDWPFMMDLLMY-------LPTWDGKVPQ----- 570
Query: 637 RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
PAI KP+PLWTGKQV + + +P +
Sbjct: 571 ----------PAILKPKPLWTGKQVFSLI------------------IPGNV-------- 594
Query: 697 KQSDRKKNDKGKLSKTNKMHKDK--SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLI 754
+ +T+ H D SG K + G + K+LI
Sbjct: 595 -----------NVLRTHSTHPDSEDSGPYKWISPG-------------------DTKVLI 624
Query: 755 YKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
+L+ G++ L+H V G A S + + +L G T G+
Sbjct: 625 EHGELLSGIVCSKTVGKSAGNLLHVVALELGHEIAANFYSHIQTVINAWLLREGHTIGIG 684
Query: 813 DLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
D + + + +N + + K+ ++ +E +++P G+
Sbjct: 685 DTIADQSTYLDIQNTIRKA----KQDVVDVIEKAHNDDLEPTP------------GNTLR 728
Query: 873 AYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
F+ K+ LN + + S + LSE N M SG+KGSK+N Q+ +
Sbjct: 729 QTFENKVNQILNDARDRTGSSAQKSLSE-------FNNFKSMVVSGSKGSKINISQVIAC 781
Query: 931 LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
+GQQ +EGKR+P +TLP F D+ P + GF+ + +L GL P E++FH M GREGL
Sbjct: 782 VGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGL 841
Query: 991 VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
+DTAVKT+ +GY+QR LIK +E + ++YD +VR++ +VQ YGEDG+D
Sbjct: 842 IDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLD 891
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
L ++ +F ++AQPGE VG LA+QS+GEP+TQMTLNTFH AG NVTLG+PRL+EI
Sbjct: 1062 LLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEI 1121
Query: 1187 LTIASKDIKTPVIT 1200
+ + SK +KTP +T
Sbjct: 1122 INV-SKQLKTPSLT 1134
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
C TC CPGHFGH++L PV++ +L+ +CF+C
Sbjct: 66 CMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKSLKILRCVCFYC 109
>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1 OS=Drosophila
melanogaster GN=RpII215 PE=3 SV=4
Length = 1887
Score = 309 bits (792), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 238/805 (29%), Positives = 368/805 (45%), Gaps = 144/805 (17%)
Query: 252 EKLWENEFELCSFISDMQQQGFG---KKAGHSIFFLGVVLVPPIKFRLPS--KGGDSVME 306
E++WE + I+D + G K A + V+ VPP+ R P+ G + +
Sbjct: 211 ERVWE----ILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVR-PAVVMFGAAKNQ 265
Query: 307 HPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDMAS- 365
T LS +++AN L + A VI LQ V L D R M
Sbjct: 266 DDLTHKLSDIIKANNELRKNEASG-AAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKS 324
Query: 366 -----GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPE 420
I L+ KEG R LMGKRV+++ R+VI+PDP L ++++G+P A LT+PE
Sbjct: 325 GKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPE 384
Query: 421 RVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP 480
VTP+N+ ++++ + G +PGA + + G ++D P
Sbjct: 385 LVTPFNIDRMQELVRRGNSQYPGAKYIVR---------------DNGERIDLR----FHP 425
Query: 481 GKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCST 539
K SD + G V RHL+D D+V+ NRQPTLHK S+M H V+VL T RM+ + S
Sbjct: 426 -KSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPW-STFRMNLSCTSP 483
Query: 540 YNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKK 599
YNADFDGDEMN+H PQ +RAE NI Q + P P+ ++QD + + +TK+
Sbjct: 484 YNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKR 543
Query: 600 DTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGK 659
D F+ R++ LL L ++ K Q P I KP PLWTGK
Sbjct: 544 DVFITREQVMNLLMF-------LPTWDAKMPQ---------------PCILKPRPLWTGK 581
Query: 660 QVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDK 719
Q+ + + +P + + +T+ H D
Sbjct: 582 QIFSLI------------------IPGNV-------------------NMIRTHSTHPD- 603
Query: 720 SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHT 777
E ++ K + K+++ +L+ G++ K L+H
Sbjct: 604 ----------------EEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHI 647
Query: 778 VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKR 837
G + AG + + +L G + G+ D + + + N + + + K
Sbjct: 648 CFLELGHDIAGRFYGNIQTVINNWLLFEGHSIGIGDTI----ADPQTYNEIQQAIKKAKD 703
Query: 838 VHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLN---KHTSSSVINE 894
+ ++ E++P G+ F+ K+ LN T S
Sbjct: 704 DVINVIQKAHNMELEPTP------------GNTLRQTFENKVNRILNDARDKTGGSAKKS 751
Query: 895 LLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFH 954
L T N + M SG+KGS +N Q+ + +GQQ +EGKR+P +TLP F
Sbjct: 752 L--------TEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFI 803
Query: 955 PWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL 1014
D+ P + GF+ + +L GL P E+YFH M GREGL+DTAVKT+ +GY+QR LIK +E +
Sbjct: 804 KDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESV 863
Query: 1015 KISYDYSVRDADGSIVQFCYGEDGV 1039
++YD +VR++ G ++Q YGEDG+
Sbjct: 864 MVNYDGTVRNSVGQLIQLRYGEDGL 888
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 64/96 (66%), Gaps = 6/96 (6%)
Query: 1116 KFLSNE--MAKQDFLKLV---KHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAG 1170
K++S E ++ + F LV + +F + A PGE VG LA+QS+GEP+TQMTLNTFH AG
Sbjct: 1044 KYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAG 1103
Query: 1171 RGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVG 1206
NVTLG+PRL+EI+ I SK K P +T L G
Sbjct: 1104 VSSKNVTLGVPRLKEIINI-SKKPKAPSLTVFLTGG 1138
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC-------HHFK----- 48
C+TC CPGHFGHIDL PV++ +L+ +CF+C H+ K
Sbjct: 67 CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126
Query: 49 -ASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTP 102
SR + K + + + KG I D+DL E+ P+ + C P
Sbjct: 127 MKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQP 181
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis elegans
GN=ama-1 PE=1 SV=3
Length = 1856
Score = 309 bits (792), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 235/770 (30%), Positives = 361/770 (46%), Gaps = 139/770 (18%)
Query: 286 VVLVPPIKFRLPS--KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMN 343
V+ VPP+ R P+ G + + T LS +++ N L N A V+
Sbjct: 246 VLPVPPLAVR-PAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANG-AAAHVLTDDVRL 303
Query: 344 LQQSVNVLFDG-------KNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
LQ V L D G R + S I Q L+ KEG R LMGKRV+++ R+VI+
Sbjct: 304 LQFHVATLVDNCIPGLPTATQKGGRPLKS-IKQRLKGKEGRIRGNLMGKRVDFSARTVIT 362
Query: 397 PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
DP L ++ +G+P A LT+PE VTP+NV KL++ + G +PGA + + +
Sbjct: 363 ADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYIIRE------ 416
Query: 457 PPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSI 516
R+ + R + +QP G V RH++DGD+++ NRQPTLHK S+
Sbjct: 417 ---NGARVDL-RYHPRAADLHLQP---------GYRVERHMKDGDIIVFNRQPTLHKMSM 463
Query: 517 MAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRP 576
M H V++L T RM+ + S YNADFDGDEMN+H PQ +RAE I Q + P
Sbjct: 464 MGHRVKILPW-STFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITP 522
Query: 577 SNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLIS 636
P+ ++QD + + ++TK+D F++ LL L ++ GK Q
Sbjct: 523 QANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMY-------LPTWDGKVPQ----- 570
Query: 637 RSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNAD 696
PAI KP+PLWTGKQV + + +P +
Sbjct: 571 ----------PAILKPKPLWTGKQVFSLI------------------IPGNV-------- 594
Query: 697 KQSDRKKNDKGKLSKTNKMHKDK--SGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLI 754
+ +T+ H D SG K + G + K++I
Sbjct: 595 -----------NVLRTHSTHPDSEDSGPYKWISPG-------------------DTKVII 624
Query: 755 YKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVD 812
+L+ G++ L+H V G A S + + +L G T G+
Sbjct: 625 EHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIG 684
Query: 813 DLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAV 872
D + + + +N + + K+ ++ +E +++P G+
Sbjct: 685 DTIADQATYLDIQNTIRKA----KQDVVDVIEKAHNDDLEPTP------------GNTLR 728
Query: 873 AYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
F+ K+ LN + + S + LSE N M SG+KGSK+N Q+ +
Sbjct: 729 QTFENKVNQILNDARDRTGSSAQKSLSE-------FNNFKSMVVSGSKGSKINISQVIAC 781
Query: 931 LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
+GQQ +EGKR+P +TLP F D+ P + GF+ + +L GL P E++FH M GREGL
Sbjct: 782 VGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGL 841
Query: 991 VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
+DTAVKT+ +GY+QR LIK +E + ++YD +VR++ +VQ YGEDG+D
Sbjct: 842 IDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLD 891
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 59/81 (72%), Gaps = 1/81 (1%)
Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
N A L ++ +F ++AQPGE VG LA+QS+GEP+TQMTLNTFH AG NVTLG
Sbjct: 1055 NSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLG 1114
Query: 1180 IPRLQEILTIASKDIKTPVIT 1200
+PRL+EI+ + SK +KTP +T
Sbjct: 1115 VPRLKEIINV-SKTLKTPSLT 1134
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCV-R 59
C TC CPGHFGH++L PV++ +L+ +CF+C R ++K R
Sbjct: 66 CMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYC-----GRLLIDKSAPR 120
Query: 60 KLELIIKGDIIAAKSLDL 77
LE++ K + K L +
Sbjct: 121 VLEILKKTGTNSKKRLTM 138
>sp|P25202|RPC1_GIAIN DNA-directed RNA polymerase III subunit RPC1 OS=Giardia intestinalis
GN=RPOA3 PE=3 SV=1
Length = 1741
Score = 275 bits (703), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 234/808 (28%), Positives = 379/808 (46%), Gaps = 131/808 (16%)
Query: 444 ATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVV 503
A+ L S+ L K +S+ +K R AI + +D +VYRHL D +
Sbjct: 630 ASLQLTNASSQHLSTFKLNTVSLLQKDRRGRQAIANSLRPND------IVYRHLLPNDTL 683
Query: 504 LVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEA 563
L NRQP+LH+ SIM V+ +T + CS +NADFDGDEMN+ + Q + +RAEA
Sbjct: 684 LFNRQPSLHRMSIM-QFNAVIHENRTFSFNPVVCSPFNADFDGDEMNIFYMQGQEARAEA 742
Query: 564 YNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLG 623
++ ++ + P +G+ + L QD + LL+ K F+ R E+CQ + S G G
Sbjct: 743 GILMGSHENIISPRHGECMIGLTQDFLTGIYLLSGKGIFMTRQEYCQHV-SYGCDGFGDA 801
Query: 624 SF------TGKPGQRVLISR--SEQEVL-----PLL--PAIWKPEPLWTGKQVITAVLNH 668
++ G+ + + R +E++ + P L P I P L++GKQV++ ++
Sbjct: 802 TYGVSLYNYGREFIKSIHDRRGTEEDTVGFVKVPCLSQPCIVYPRQLYSGKQVLSVLM-- 859
Query: 669 ITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVE 728
K ND ++ N H DK+ KK
Sbjct: 860 ---------------------------------KGNDFDSVN-INLEHGDKTYKKD---- 881
Query: 729 GKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNT 786
+ + ++++ ++I ++ + G + K A + + + + YG +
Sbjct: 882 -----------SDRRALSVNDDYIIIQNSEHLVGRLTKTFLASSKNCIFYFLVQNYGPVS 930
Query: 787 AGTLLSALSRLFTVFLQMHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEA 842
A ++ +++ FL +GFT G+DD++ +L KE + ++E +
Sbjct: 931 AARIMLRFAKVAARFLMNYGFTIGIDDVMPSQRVLGKKEVIVQEGYEKAQEKIRDYESGK 990
Query: 843 LELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLK 902
LE G+ + + +E + +Q+ + S L E L
Sbjct: 991 LEAIPGSTV-----QETLEATL----------------NQILSNVRESCAQIALKE--LH 1027
Query: 903 PTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRA 962
T K I M+ G+KGS +N Q+ LGQQ G R P ++ P F+ + P A
Sbjct: 1028 FTNKPLI--MSLCGSKGSPINIAQMIIILGQQSFGGSRAPDDFYTRSTPYFYHYSKEPNA 1085
Query: 963 GGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSV 1022
GFI++ F TGL P E+ H AGR+G++D+A KT+ +GYLQR L+K LE L +SYD++V
Sbjct: 1086 KGFILNSFYTGLLPFEFLAHARAGRDGVIDSACKTADTGYLQRRLVKCLEDLSVSYDFTV 1145
Query: 1023 RDADGSIVQFCYGEDGVDVHQTSFISK--FDALAARERGRGRGRNKFCDKGSHTFVMGRN 1080
R++ S+VQF +G DG D + + FD R++ +G+ ++ R
Sbjct: 1146 RNSKKSVVQFRFGHDGFDPIKLEVGTGQCFDLDTLLRHIILLNRSQDLAEGAFPVLLDRY 1205
Query: 1081 QE------MIYKKCSGQ----LDASN--AYIME--LPDALKDN------AEKFADKFLSN 1120
+ ++ K GQ ++ SN +Y + LP + A A FL
Sbjct: 1206 KAEAELDVLLNKDFYGQEACLIERSNVTSYFQQSILPKLTTNTHIATTVAPALAASFLQT 1265
Query: 1121 EMAKQ---DFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVT 1177
+ K+ DFL+ V+ K++ +PG P G +A+QSVGEPSTQMTL +FH AG MN+T
Sbjct: 1266 TLTKKDIDDFLRQVRRKYIRLNLEPGSPCGAVAAQSVGEPSTQMTLKSFHHAGLASMNIT 1325
Query: 1178 LGIPRLQEILTIASKDIKTPVITCPLLV 1205
G+PRL+EI+ K I TP+ T L V
Sbjct: 1326 QGVPRLKEIVDGVVK-ISTPITTVELHV 1352
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 102/202 (50%), Gaps = 14/202 (6%)
Query: 289 VPPIKFR--LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQ 346
VPP R + S G E T L ++L N L A V+ + A+W L
Sbjct: 313 VPPSCLRPSVQSGSGAGTTEDNLTSHLVRILTINDKLKEAMVSGAVATSKVYAKWDQLNM 372
Query: 347 SVNVLFDGKNAAGQRDM----------ASGICQLLEKKEGLFRQKLMGKRVNYACRSVIS 396
V++L+ GK G + + +GI L+ K G FR L GKRVN++ R+VIS
Sbjct: 373 DVSLLYIGKIPGGVQPVKNKTDSGTKEGTGIIDRLKGKAGRFRSNLSGKRVNFSGRTVIS 432
Query: 397 PDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRL 456
P+PYL++ ++ IP A LT+PE VT N+ LR+ I+NG + +PGA L T+R
Sbjct: 433 PNPYLSMQQVAIPRLIAQNLTFPEIVTSRNIRFLRELILNG-KTYPGANEVLLLNDTIRY 491
Query: 457 PPN-KKMRISIGRKLDTSRGAI 477
P K++ I + + D A+
Sbjct: 492 NPALKRLGIDVKQSRDMEAKAM 513
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS 50
C TCG+ +C GHFG I L +PV++P L N T+L +C FC K S
Sbjct: 79 CATCGKDTKMCIGHFGTISLALPVFHPGLINDARTMLSIVCPFCSRVKIS 128
>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III subunit RPC1 OS=Plasmodium falciparum
PE=3 SV=1
Length = 2339
Score = 274 bits (701), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 183/577 (31%), Positives = 288/577 (49%), Gaps = 112/577 (19%)
Query: 490 GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM 549
G +V RH+ DGD+VL NRQP+LH+ SIM H +++ KT R + CS YNADFDGDEM
Sbjct: 559 GDVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIMDF-KTFRFNECVCSPYNADFDGDEM 617
Query: 550 NVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFC 609
N+ PQ E +RAEA ++N + + P NG+ + +L QD + ++ ++T KDTFL+RD FC
Sbjct: 618 NLDVPQTEEARAEALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFLDRDTFC 677
Query: 610 QLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHI 669
L S S + L + P +PAI KP+ LWTGKQ+I+ ++
Sbjct: 678 --LLCSYFSDASL--YIELP----------------IPAILKPKELWTGKQLISVLI--- 714
Query: 670 TRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEG 729
+P ++K+N + + +K G K +
Sbjct: 715 ---KP-------------------------NKKENTIINFEIQEREYSNKFGDLKHLC-- 744
Query: 730 KPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTA 787
L++ + YK++L+ G + K + YGL + + S+ A
Sbjct: 745 -----------------LNDSYVCFYKSELICGSLGKKVLGSSKYGLFYYLIHHNSSHIA 787
Query: 788 GTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHL-HGSEEIGKRVHL---EAL 843
+++ LS+L + + G T G+DD+ + ++K+ L G E++ + L + +
Sbjct: 788 LKIMNRLSKLTSRYFSNKGMTIGIDDVRPSQTLTEKKKDLLLKGYEKVNNEIILYNEKKM 847
Query: 844 ELEDGAEIDP---IKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGL 900
+++ G ++ IK+KS ++ G Y L
Sbjct: 848 QIQPGCTLEETLEIKVKSILDDLRNDAGKTCNQYL----------------------HYL 885
Query: 901 LKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAP 960
KP +M SGAKG+ +N Q+ + +GQQ + G+R+ +TLP FH
Sbjct: 886 NKPL------IMFNSGAKGALINIAQMIACVGQQNVAGQRIQNGFINRTLPHFHFHCKDS 939
Query: 961 RAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDY 1020
+ GF+ + F TGL P E++FH M+GREGLVDTAVKT+ +GY+QR L+K LE L I YDY
Sbjct: 940 ESRGFVQNSFYTGLSPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDY 999
Query: 1021 SVRDADGSIVQFCYGEDGVD----VHQTSFISKFDAL 1053
SVR D IVQF YG+D ++ + +++ +FD +
Sbjct: 1000 SVRSCDKQIVQFIYGDDALNPSYIDNNNTYLDQFDKV 1036
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 97/181 (53%), Gaps = 16/181 (8%)
Query: 282 FFLGVVLVPPIKFRLPSKGGDS--VMEHPQTVLLSKVLQ---------ANIYLANAYVNQ 330
+ +LVPP R PS D E T +LS++ Q N Y N ++
Sbjct: 246 LIITALLVPPNTIR-PSVIIDEHGTAEDDLTCILSEITQLNNTIYNQCTNGYQTNQFLGN 304
Query: 331 PDNAKVIVARWMNLQQ-SVNVLFDGKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNY 389
+ ++ + R++N +V+ L +N + GICQ L+ KEG FR L GKRV++
Sbjct: 305 VEFLQLQITRFINSDSPAVSQLLATQNISKP---GRGICQRLKGKEGRFRCNLSGKRVDF 361
Query: 390 ACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLD 449
+ R+VISPDP ++++E+ IP A+RLTYPE V +N+ KL+ I NG PGA + +
Sbjct: 362 SSRTVISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPGANYIIK 421
Query: 450 K 450
K
Sbjct: 422 K 422
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
F+ +K+ ++ PG+ VG +++QS+GEP TQMTL TFH AG MNVTLG+PR++EI
Sbjct: 1764 FIFFNIYKYFKYISTPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI 1823
Query: 1187 LTIASKDIKTPVITCPLLVG 1206
+ AS I+TP++ PL V
Sbjct: 1824 IN-ASNSIQTPILNIPLEVN 1842
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVE 55
C+TC ++ C GHFG+I+L PV++ + + +L IC +C S+ +++
Sbjct: 88 CETCNKKLINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCSSLLLSKEKID 142
>sp|Q5ZL98|RPC1_CHICK DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 142/396 (35%), Positives = 211/396 (53%), Gaps = 47/396 (11%)
Query: 280 SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
S L +LVPP+ R PS D E T+ L++++ N + ++ ++
Sbjct: 248 SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305
Query: 337 IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
I+ W LQ + + + + +MA G Q L+ K+G FR L GKRV+++
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 392 RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
R+VISPDP L ++E+ +P + A LT+PE+V N+ +R + NG ++HPGA +
Sbjct: 366 RTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQQRH 425
Query: 452 STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
+ M+ R + ++L G +V RHL DGD+VL NRQP+L
Sbjct: 426 TQMKRFLKYGNREKMAQELKF-----------------GDIVERHLIDGDIVLFNRQPSL 468
Query: 512 HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
HK SIMAH+ RV K +T R + C+ YNADFDGDEMN+H PQ E ++AEA ++
Sbjct: 469 HKLSIMAHIARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527
Query: 572 QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
V P NG+PL + IQD + A LLT KDTF +R + CQ++ S
Sbjct: 528 NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570
Query: 632 RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVL 666
+L+ + E+ + L PAI KP LWTGKQV +++L
Sbjct: 571 -ILVGKDEKIKVRLPPPAILKPVTLWTGKQVFSSIL 605
Score = 213 bits (543), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 147/478 (30%), Positives = 232/478 (48%), Gaps = 56/478 (11%)
Query: 754 IYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCG 810
I ++L+ G +DK + + + + +G A +S L+RL V+L GF+ G
Sbjct: 640 IQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYLSNRGFSIG 699
Query: 811 VDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 870
+ D+ + + + LH + ++EAL ++++ +
Sbjct: 700 IGDVTPGQGLLKAKYELLHAGYKKCDE-YIEALN------------TGKLQQQPGCTAEE 746
Query: 871 AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
+ +K S + H S+ + EL N +M G+KGS +N Q+ +
Sbjct: 747 TLEALILKELSVIRDHAGSACLREL--------DKSNSPLIMALCGSKGSFINISQMIAC 798
Query: 931 LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
+GQQ + G RVP ++LP F P A GF+ + F +GL P E++FH MAGREGL
Sbjct: 799 VGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGL 858
Query: 991 VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQT------ 1044
VDTAVKT+ +GY+QR L+K+LE L YD +VR + G I+QF YG DG+D
Sbjct: 859 VDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEP 918
Query: 1045 -SFISKFDALAARERGRGR---GRNKFCDKGSHTFVMGRNQEMIYKKCSGQLDASNAYIM 1100
F D + A R +N+ +M +N+ + + L +I
Sbjct: 919 LEFKRVLDNIRAVYPCRSEPALSKNELVLTSES--IMKKNEFLCCR--DSFLQEIKKFIK 974
Query: 1101 ELPDALKDNAEKFA---------------DKFLSNEMAKQDFLKLVKHKFVLSLAQPGEP 1145
+ + +K +K+ D+ ++ K FL+ + K++ + +PG
Sbjct: 975 GVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQLEK--FLETCRDKYMRAQMEPGSA 1032
Query: 1146 VGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
VG L +QS+GEP TQMTL TFH AG MN+TLG+PR++EI+ ASK I TP+IT L
Sbjct: 1033 VGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAISTPIITAQL 1089
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
C+TCG+ C GH+G+IDL +P ++ F + +L+ IC C S E
Sbjct: 69 CETCGKNLADCLGHYGYIDLELPCFHVGYFKAVIGILQMICKTCCRIMLSVEE 121
>sp|A4IF62|RPC1_BOVIN DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 223 bits (568), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 143/396 (36%), Positives = 209/396 (52%), Gaps = 47/396 (11%)
Query: 280 SIFFLGVVLVPPIKFRLPSKGGD---SVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKV 336
S L +LVPP+ R PS D E T+ L++++ N + ++ ++
Sbjct: 248 SDLILTRLLVPPLCIR-PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGA-KTQM 305
Query: 337 IVARWMNLQQSVNVLFDGKNAAGQRDMA-----SGICQLLEKKEGLFRQKLMGKRVNYAC 391
I+ W LQ + + + + +MA G Q L+ K+G FR L GKRV+++
Sbjct: 306 IMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSG 365
Query: 392 RSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKL 451
R+VISPDP L ++E+ +P + A LT+PE+V N+ LR + NG E+HPGA +
Sbjct: 366 RTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRH 425
Query: 452 STMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTL 511
+ M+ R + ++L G +V RHL DGDVVL NRQP+L
Sbjct: 426 TQMKRFLKYGNREKMAQELKF-----------------GDIVERHLIDGDVVLFNRQPSL 468
Query: 512 HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
HK SIMAH+ RV K +T R + C+ YNADFDGDEMN+H PQ E ++AEA ++
Sbjct: 469 HKLSIMAHLARV-KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKA 527
Query: 572 QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
V P NG+PL + IQD + A LLT KDTF +R + CQ++ S
Sbjct: 528 NLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIAS----------------- 570
Query: 632 RVLISRSEQEVLPL-LPAIWKPEPLWTGKQVITAVL 666
+L+ + E+ + L P I KP LWTGKQ+ + +L
Sbjct: 571 -ILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVIL 605
Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 152/489 (31%), Positives = 238/489 (48%), Gaps = 64/489 (13%)
Query: 747 LSEEKLLIYKNDLVRGVIDKAQF---ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQ 803
+++ + I ++L+ G +DK + + + + +G N A +S L+RL V+L
Sbjct: 633 VNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLS 692
Query: 804 MHGFTCGVDDLL----ILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSE 859
GF+ G+ D+ +LK K +E ++EAL +
Sbjct: 693 NRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDE-----YIEALN------------TGK 735
Query: 860 IEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKG 919
+++ + + +K S + H S+ + EL N M G+KG
Sbjct: 736 LQQQPGCTAEETLEALILKELSVIRDHAGSACLREL--------DKSNSPLTMALCGSKG 787
Query: 920 SKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEY 979
S +N Q+ + +GQQ + G RVP ++LP F P A GF+ + F +GL P E+
Sbjct: 788 SFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEF 847
Query: 980 YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
+FH MAGREGLVDTAVKT+ +GY+QR L+K+LE L YD +VR + G I+QF YG DG+
Sbjct: 848 FFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGL 907
Query: 1040 DVHQT-------SFISKFDALAARERGRGR---GRNKFCDKGSHTFVMGRNQEMIYKKCS 1089
D F D + A R +N+ S +M +N+ + +
Sbjct: 908 DPAAMEGKDEPLEFKRVLDNIKAVFPCRSEPALSKNELL--LSAESIMKKNEFLCCQ--D 963
Query: 1090 GQLDASNAYIMELPDALKDNAEKFA---------------DKFLSNEMAKQDFLKLVKHK 1134
L +I E+ + +K +K+ D+ ++ K FL+ + K
Sbjct: 964 SFLQEIKKFIKEVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQIEK--FLETCRDK 1021
Query: 1135 FVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDI 1194
++ + +PG VG L +QS+GEP TQMTL TFH AG MN+TLG+PR++EI+ ASK I
Sbjct: 1022 YMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN-ASKAI 1080
Query: 1195 KTPVITCPL 1203
TP+IT L
Sbjct: 1081 STPIITAQL 1089
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
C+TCG+ C GH+G+IDL +P ++ F + +L+ IC C H S+ E
Sbjct: 69 CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121
>sp|Q86AQ5|RPC1_DICDI DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium
discoideum GN=polr3a PE=3 SV=1
Length = 1450
Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 138/394 (35%), Positives = 205/394 (52%), Gaps = 52/394 (13%)
Query: 282 FFLGVVLVPPIKFR--LPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
L +LVPP+ R +P GG E T+ LS++L N ++ + V++ + + I+
Sbjct: 244 LILTYMLVPPVSIRPSVPMDGGSGTNEDDLTMKLSEILHINEHI-RSNVDRAEMS-AIME 301
Query: 340 RWMNLQQSVNVLFDGKNAAGQRDM-----ASGICQLLEKKEGLFRQKLMGKRVNYACRSV 394
W LQ S + + M G+ Q L+ K G FR L GKRV+++ R+V
Sbjct: 302 DWDYLQASCAIYINSDVPGLPLQMKPTKAVRGLSQRLKGKTGRFRGNLSGKRVDFSGRTV 361
Query: 395 ISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATH--YLDKLS 452
ISPDP L ++E+ +P AL +TYPERVT +N+ +L+ +ING + HPGA + Y D +
Sbjct: 362 ISPDPNLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYVINGPDRHPGANYIIYADGVK 421
Query: 453 TMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLH 512
L + + + K+ G +V RH+ DGD++L NRQP+LH
Sbjct: 422 KW-LKFGNREKFAAELKI-------------------GDIVERHIIDGDIMLFNRQPSLH 461
Query: 513 KPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQ 572
K SIM+H RV+ +TLR + C+ YNADFDGDEMN+H PQ E +RAEA ++ N
Sbjct: 462 KLSIMSHKARVMPW-RTLRFNECVCTPYNADFDGDEMNIHLPQTEEARAEATILMGVTNN 520
Query: 573 YVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQR 632
+ P NG+PL + QD + ++ L++++D F R F +
Sbjct: 521 LITPRNGEPLVAATQDFLTASYLISRRDAFYERYRFALMCTH------------------ 562
Query: 633 VLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVL 666
+E LP PAI KP LWTGKQ+ +L
Sbjct: 563 -FADANEHIDLP-PPAILKPVELWTGKQIFEVLL 594
Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 152/290 (52%), Gaps = 30/290 (10%)
Query: 757 NDLVRGVIDKAQFA---DYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDD 813
++L+ G IDK+ L H + + A ++ L++L FL GF+ G+ D
Sbjct: 631 SELMCGSIDKSIIGGGNKNSLFHILMRDFSPTIAANCMTRLAKLCARFLGDQGFSIGIPD 690
Query: 814 LLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVA 873
+ +D +R+++ + E K+ + + E G+ ++L S G +
Sbjct: 691 IKPAEDLDRKKREII---ETAYKKCAVFLKDYESGS----LQLSS---------GCSMEQ 734
Query: 874 YFDMKMT---SQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 930
F+ KM SQ+ +N+L N +M G+KGS +N Q+
Sbjct: 735 TFEAKMNQTLSQIRDDCGKLCVNDL--------PNYNSPLIMGLCGSKGSNINIAQMICC 786
Query: 931 LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 990
+GQQ + G R+P + +T P F + P++ GF+ + F TG+ P E++FH M GREGL
Sbjct: 787 VGQQIVNGTRIPNGFTNRTTPHFKHFAKNPKSKGFVSNSFYTGMIPTEFFFHTMGGREGL 846
Query: 991 VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
VDTAVKT+ +GY+QR L+K LE L YDY+VRD+ G IVQF YG+DG+D
Sbjct: 847 VDTAVKTAETGYMQRRLMKALEDLSTHYDYTVRDSIGGIVQFIYGDDGLD 896
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 68/104 (65%), Gaps = 7/104 (6%)
Query: 1106 LKDNAEKFADKFLSNEMAK------QDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPST 1159
LK E+FA++ + N++ + + FL + K+ + +PG VG + +QS+GEP T
Sbjct: 1057 LKLLGERFANEHVVNQIHRITKTQIELFLDICLDKYSRARIEPGTAVGAIGAQSIGEPGT 1116
Query: 1160 QMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
QMTL TFH AG MNVTLG+PR++EI+ A+K+I TP+IT L
Sbjct: 1117 QMTLKTFHFAGVASMNVTLGVPRIKEIIN-AAKNISTPIITASL 1159
Score = 40.8 bits (94), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
C TCG C GHFG+I L +PV++ + +L+ IC C + + + +RK
Sbjct: 67 CTTCGLSIVDCVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCSTILLNEEKKQYYLRK 126
Query: 61 L 61
+
Sbjct: 127 M 127
>sp|P41556|RPOA1_METVS DNA-directed RNA polymerase subunit A' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoA1 PE=3 SV=1
Length = 889
Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 156/409 (38%), Positives = 217/409 (53%), Gaps = 47/409 (11%)
Query: 232 KKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPP 291
K QK L S S+V++I+EK+ + +L S + + + L V+ VPP
Sbjct: 173 KSQKQLTS-----SEVREILEKIPNEDCKLLGINSRVARPEY--------MVLTVLPVPP 219
Query: 292 IKFRLPSKGGDS--VMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVN 349
+ R PS +S E T L +++ N L +N +I W LQ +N
Sbjct: 220 VTVR-PSITLESGERSEDDLTHKLVDIIRINQRLEEN-INGGAPNLIIEDLWDLLQYHIN 277
Query: 350 VLFD----GKNAAGQRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPY 400
FD G A R SG + Q L+ KEG FR L GKRVN++ R+VISPDP
Sbjct: 278 TYFDNEAPGIPPARHR---SGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPR 334
Query: 401 LAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNK 460
L++NE+GIP A LT PE+VTP+N+ ++R I NG++ HPG + + K+ T + +
Sbjct: 335 LSINEVGIPELIAKELTVPEKVTPYNIERIRKLIENGSDKHPGVNYVIKKVKT-KDGKEE 393
Query: 461 KMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHV 520
+ +I I DT++ V+ N +G +V RHL DGDVVL NRQP+LH+ SIMAH
Sbjct: 394 EYKIKI---TDTNKKMWVE------NIVDGMVVERHLGDGDVVLYNRQPSLHRMSIMAHK 444
Query: 521 VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGD 580
V+VL +T R + C YNADFDGDEMNVH PQ E +RAEA ++ + P G
Sbjct: 445 VKVLP-YRTFRHNLCVCPPYNADFDGDEMNVHVPQSEEARAEAETLMLVEKHIISPRYGG 503
Query: 581 PLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKP 629
P+ I D + A +LT + +DE LL SSG GS G+P
Sbjct: 504 PIIGAIHDFVSGAYVLTSSNFI--KDEALTLL-----KSSGFGSELGEP 545
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/303 (35%), Positives = 170/303 (56%), Gaps = 24/303 (7%)
Query: 741 KSKEKELSEEKLLIYKND-LVRGVIDKAQF-ADYGLV-HTVQELYGSNTAGTLLSALSRL 797
+ K +E + +I +N LV+GVIDK F A+ G+V +T+ + +GS A T L + +++
Sbjct: 583 QCKREECENDAFVIIRNGRLVQGVIDKNGFGAETGVVLNTIVKDFGSEDARTFLDSATKM 642
Query: 798 FTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLK 857
+ + GFT G+DD I + +E ++ L +E + E +E +G +DP+
Sbjct: 643 SVKSMMLRGFTTGIDDEDIPSEAIQEIQDLLDKAESDVQ----EIVERYEGGTLDPL--- 695
Query: 858 SEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGA 917
RG ++ AY M++ + T V + LS+ +N +LM +GA
Sbjct: 696 -----PGRGIEESREAYI-MQILGKARDDTGK-VAEKYLSK-------ENHAALMARTGA 741
Query: 918 KGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQ 977
+GS +N +++ +GQQ + G RV R G+TLP F ++ GF+ + GL P
Sbjct: 742 RGSLLNITMMAASVGQQSVRGGRVFRGYRGRTLPHFGEGSLDAKSHGFVRSCYKKGLAPT 801
Query: 978 EYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGED 1037
EY+FH M GREGLVD AV+T++SGY+QR L+ L+ +K YD +VRD+ G IVQF YGED
Sbjct: 802 EYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQDIKAEYDGTVRDSRGIIVQFNYGED 861
Query: 1038 GVD 1040
VD
Sbjct: 862 LVD 864
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 23/194 (11%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
CK+C R CPGHFGHI+L V + +Y LLK +C C + + ++ + K
Sbjct: 62 CKSCSGRVGTCPGHFGHIELSKSVIHIGFAKDIYKLLKAVCPHCGKVTVTEIKRDEYLEK 121
Query: 61 LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
+ L ++ D +L DL E++ S SC V YD KP + L
Sbjct: 122 M-LKLEEDGGDPWTLSDDLLKEAAKS-----SVCPSCGEVKYDIKYD-----KPTTYHQL 170
Query: 121 QFAEAKLALLQFLK--IETTKCGNCK--AKNPRISKPTFGWIHMNGMPHADIRANLIRGC 176
K ++ +E +CK N R+++P + + + +P +R ++
Sbjct: 171 DGKSQKQLTSSEVREILEKIPNEDCKLLGINSRVARPEYMVLTVLPVPPVTVRPSI---- 226
Query: 177 NLGETFSGGEEEKD 190
T GE +D
Sbjct: 227 ----TLESGERSED 236
>sp|P28363|RPA1_EUPOC DNA-directed RNA polymerase I subunit RPA1 (Fragment) OS=Euplotes
octocarinatus GN=RPA1 PE=3 SV=1
Length = 638
Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 147/444 (33%), Positives = 215/444 (48%), Gaps = 81/444 (18%)
Query: 138 TKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCNLGETFSGGEEEKDLGASSDV 197
+KC +C NPRI K + + D +A L + +GA S+
Sbjct: 243 SKCPHCDVCNPRIKKDGATKFFQMPLSNRDTKAMLSSHGRIDMRIDIS----TMGAISEY 298
Query: 198 DAPETHSFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWEN 257
D + S G V G ++Q+ L P +V + + +LW+
Sbjct: 299 DEEDDES-----------------SGESEVREGDEEQEKK-QKYLSPIEVLEHMRRLWDV 340
Query: 258 EFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG-----DSVMEHPQTVL 312
E L + + D + IFF+ +LV +FR S GG D H + +
Sbjct: 341 EDTLLNELFD----------NYKIFFMNNLLVSQNRFRPESSGGKQSGDDRDYLHAHSAM 390
Query: 313 LSKVLQANIYL--------------------ANAYVNQPD------NAKVIVARWMNLQQ 346
L+K++ ANI + Q D +K ++ W LQ+
Sbjct: 391 LTKIINANIAFRRTIELKENLTDDRNLETESEKSKTQQIDLSKTEITSKQVIKAWAELQE 450
Query: 347 SVNVLFDGKNAAG-QRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNE 405
SVN D AA + G+ QLLE+KEG+FR K+MGKRVN+A RSVISPDPY++ ++
Sbjct: 451 SVNCYLDSSLAAKLENKEKPGLRQLLERKEGIFRMKMMGKRVNFAGRSVISPDPYISTDQ 510
Query: 406 IGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRIS 465
IG+P + A +T+PE N+ KL+ +INGA HPGA + P ++ +
Sbjct: 511 IGVPEFIARTITFPEPAK--NIEKLKRCVINGAHKHPGANF-------IEYPNGERKALE 561
Query: 466 IGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLK 525
+ + +I++ + K+VYRH+Q GD +LVNRQPTLHKPSIMAH +L
Sbjct: 562 NMTLEEKKQSSIIRKWR--------KIVYRHMQTGDPLLVNRQPTLHKPSIMAHNAIILP 613
Query: 526 GEKTLRMHYANCSTYNADFDGDEM 549
E+T+RMHY+NC +YNADFDGDEM
Sbjct: 614 KEQTIRMHYSNCKSYNADFDGDEM 637
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
CKTCG CPGH GHI L YNP LL++LLK C CH + S + +E +
Sbjct: 67 CKTCGCDSVYCPGHMGHIKLTSTCYNPFTMKLLHSLLKSKCLVCHRLRISPKRIELFEIR 126
Query: 61 LELIIKGDIIAAKSL 75
L+LI G ++ A+ L
Sbjct: 127 LKLIKLGYLVEAEKL 141
>sp|Q8SSC4|RPB1_ENCCU DNA-directed RNA polymerase II subunit RPB1 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB1 PE=3 SV=1
Length = 1599
Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 146/397 (36%), Positives = 205/397 (51%), Gaps = 40/397 (10%)
Query: 282 FFLGVVLVPPIKFRLPS--KGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVA 339
L V+LVPP R PS G E T L+ ++++N YL Q IV
Sbjct: 205 MILTVLLVPPPAVR-PSIVMEGSLRGEDDLTHKLADIIKSNGYLKK--YEQEGAPGHIVR 261
Query: 340 RWMNLQQSVNVLFDGKNAAG--QRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYACR 392
+ L Q F + G Q SG + L+ KEG R LMGKRV+++ R
Sbjct: 262 DYEQLLQFHVATFIDNDIGGLPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSAR 321
Query: 393 SVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLS 452
+VI+PDP +++ E+G+P A T+PE+VT +N+ +L + G HPGA + L
Sbjct: 322 TVITPDPNISLEEVGVPLEIAKIHTFPEKVTSFNIDRLEKLVRAGPNEHPGANYVLR--- 378
Query: 453 TMRLPPNKKMRISIGRKLDTSRGAIVQPGKDSDNEFE-GKMVYRHLQDGDVVLVNRQPTL 511
S G+K+D + SD E G +V RH+Q GDVVL NRQP+L
Sbjct: 379 ------------SDGQKIDLNFNR-------SDIRLEEGYVVERHMQSGDVVLFNRQPSL 419
Query: 512 HKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANN 571
HK S+MAH RV+ G KT R++ + S YNADFDGDEMN+H PQ S+AE + +
Sbjct: 420 HKMSMMAHYARVM-GNKTFRLNLSVTSPYNADFDGDEMNLHMPQSYTSKAELEELALVSR 478
Query: 572 QYVRPSNGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQ 631
Q + P + P+ ++QD + L T +DTFLN E LLY+ + + G Q
Sbjct: 479 QIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMSLLYAVNLEFCDIP--LGDAVQ 536
Query: 632 RVLISRSEQEVLPLL--PAIWKPEPLWTGKQVITAVL 666
L + +++ +L PAI KP LWTGKQV++ VL
Sbjct: 537 TGLRKGKDYDIMKILRKPAIAKPMRLWTGKQVLSFVL 573
Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/316 (30%), Positives = 156/316 (49%), Gaps = 42/316 (13%)
Query: 737 AEKNKSKEKELSEEKLLIYKNDLVRGVIDK--AQFADYGLVHTVQELYGSNTAGTLLSAL 794
+E + ++ + + +++I + GVIDK A GLVH + +G A +
Sbjct: 583 SEHDDDDKENIGDTRVIIQDGYIHSGVIDKKAAGATQGGLVHIIFNDFGPKRAAQFFDGV 642
Query: 795 SRLFTVFLQ-MHGFTCGVDDLL-------ILKDKERERKNHLHGSEEIGKRVHLEALELE 846
R+ F+ +H F+ G+ D + +++ R+ K + E ++ LE L
Sbjct: 643 QRMINAFMTGIHTFSMGIGDTIADPKTVKVVESAIRKAKEEVSALIENARQNRLERLP-- 700
Query: 847 DGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNK--HTSSSVINELLSEGLLKPT 904
G F+ + LN+ S + LSE
Sbjct: 701 ---------------------GMTMKESFESHLNLVLNRARDVSGTSAQRSLSE------ 733
Query: 905 GKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGG 964
N + M +G+KGS +N Q+++ +GQQ +EGKR+P S +TLP F D+ ++ G
Sbjct: 734 -NNNMKTMVLAGSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKDDYTGKSRG 792
Query: 965 FIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRD 1024
F+ + +LTGL P+E++FH M GREGL+DTA+KT+ +GY+QR L+K LE + D SVR
Sbjct: 793 FVENSYLTGLDPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRS 852
Query: 1025 ADGSIVQFCYGEDGVD 1040
+G + Q YGEDG D
Sbjct: 853 GNGLVYQIKYGEDGFD 868
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 1128 LKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 1187
++++ K + + P E VG LA+QSVGEP+TQMTLNTFHLAG VT+G+PRL+EI
Sbjct: 1031 VEVIDAKILKAKITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVAS-TVTMGVPRLKEIF 1089
Query: 1188 TIASKDIKTP 1197
+ +K++KTP
Sbjct: 1090 NV-TKNLKTP 1098
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
C++CG F CPGHFGHI+L P+++ + + +L+ +CF+C K R+ ++ +
Sbjct: 61 CQSCGGDNFSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKIKIPRKGIKSTLSN 120
Query: 61 LELIIKG 67
+ + KG
Sbjct: 121 VWGMSKG 127
>sp|O27125|RPOA1_METTH DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoA1 PE=3 SV=1
Length = 870
Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 135/387 (34%), Positives = 208/387 (53%), Gaps = 43/387 (11%)
Query: 242 LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--- 298
L PS+V++ +E++ +++ + ++ + + L V+ VPP+ R PS
Sbjct: 171 LTPSEVRERLERISDDDALILGVNPEVARPEW--------MVLTVLPVPPVTVR-PSITL 221
Query: 299 KGGDSVMEHPQTVLLSKVLQANIYL-ANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNA 357
+ G+ E T L +L+ N L N P ++ W LQ V FD + +
Sbjct: 222 ETGER-SEDDLTHKLVDILRINQRLKENMEAGAPQ--LIVEDLWELLQYHVTTYFDNEAS 278
Query: 358 A-------GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPP 410
R + + + Q L+ KEG FR L GKRVN++ R+VISPDP +++NE+G+P
Sbjct: 279 GVPPARHRSGRPLKT-LAQRLKGKEGRFRSNLSGKRVNFSARTVISPDPNISINEVGVPE 337
Query: 411 YFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKL 470
A +T P VT WN+ ++R+ I NG ++HPGA + + P +K+RI
Sbjct: 338 IIAREVTVPVYVTEWNIDRMREYIENGPDVHPGANYVIR-------PDGRKIRI-----Y 385
Query: 471 DTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTL 530
+ ++ +++ N G +V RHL+DGD+VL NRQP+LH+ S+MAH VRVL KT
Sbjct: 386 NETKEVVLE------NLKPGYIVERHLKDGDIVLFNRQPSLHRMSMMAHQVRVLP-YKTF 438
Query: 531 RMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHI 590
R++ C YNADFDGDEMN+H Q E SRAEA ++ + P G P+ I DHI
Sbjct: 439 RLNLCVCPPYNADFDGDEMNMHVFQTEESRAEAKTLMRVQEHILSPRFGGPIIGGIHDHI 498
Query: 591 VSAALLTKKDTFLNRDEFCQLLYSSGV 617
A LLT+K + ++ Q+L +G+
Sbjct: 499 SGAYLLTRKSAVFSEEKVFQILKKAGL 525
Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 161/328 (49%), Gaps = 48/328 (14%)
Query: 752 LLIYKNDLVRGVIDKAQFADYG---LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFT 808
++I L+ GVID+ + + L H V+E YG++ A L + ++L + GFT
Sbjct: 575 VVIENGQLISGVIDEKAYGAFAGKILDHIVKE-YGTDAAREFLDSATKLAIAGIMHAGFT 633
Query: 809 CGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI-----------KLK 857
+D I ++ + HL +E RV + +E + E++P+ K+
Sbjct: 634 TSTNDEEIPEEARERIEAHLRNAE---ARVD-QLIEAYENGELEPLPGRSLEETLEMKIM 689
Query: 858 SEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGA 917
+ +A G+ A +YFDM +N +M +GA
Sbjct: 690 QVLGEARDKSGEIAESYFDMD---------------------------ENHAVIMALTGA 722
Query: 918 KGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQ 977
+GS +N QI++ +GQQ + G R+ R +TLP F + ++ GF+ + GL P
Sbjct: 723 RGSMLNLTQITACVGQQSVRGGRISRGYDNRTLPHFKKGELGAKSRGFVHSSYKEGLDPI 782
Query: 978 EYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGED 1037
E++FH M GREGLVDTA++T++SGY+QR L+ L+ L + + V D G I+Q +GED
Sbjct: 783 EFFFHAMGGREGLVDTAIRTAQSGYMQRRLVNALQDLTVDENGRVVDNRGVIIQNRFGED 842
Query: 1038 GVDVHQTSF--ISKFDALAARERGRGRG 1063
GVD ++ + I D L R + +G
Sbjct: 843 GVDPAKSDYGKIVDLDKLVEEIRLKSKG 870
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
C+TCG + CPGHFG I+L PV + + ++ +L+ C C + E+E+ ++
Sbjct: 60 CRTCGAKGGECPGHFGSINLARPVIHVGFADTIHKILRSTCRKCGRVLLTETEIEEYRQR 119
Query: 61 L 61
+
Sbjct: 120 I 120
>sp|P0CX02|RPOA1_HALSA DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoA1 PE=3
SV=1
Length = 971
Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 193/689 (28%), Positives = 291/689 (42%), Gaps = 145/689 (21%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
CKTCGQR C GHFGHI+L P++ L++R
Sbjct: 62 CKTCGQRSGGCNGHFGHIELAA----PVIHVGFSKLIRR--------------------- 96
Query: 61 LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
+++G SL L +E E R N D R+L+ Q+ + +
Sbjct: 97 ---LLRGTCRECASL---LLTEEEKDE--------------YRENLDRTRSLR-QDVSDV 135
Query: 121 QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCN--L 178
A + E K +C P + + H + +++ L + +
Sbjct: 136 MTAAIR---------EARKKDHC----PHCGEVQYDVKHEKPTTYYEVQQVLASDYSERI 182
Query: 179 GETFSGGEEEKDLGAS-------SDVDAPETHS-FNGTF-PGTQDTAARRHQKGSGAVPS 229
+ E+E D G S +D+D + +G F P +D A G+
Sbjct: 183 AASMQPDEDEDDAGVSPQELAEQTDIDISRINEILSGEFRPRREDREAIETAIGADLTTE 242
Query: 230 GFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLV 289
K L+PSD++D E + + E SD + + L V+ V
Sbjct: 243 DMNK--------LMPSDIRDWFEDIPGEDLEALGVNSDRSRPEW--------MILTVLPV 286
Query: 290 PPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANI-YLANAYVNQPDNAKVIVARWMNLQQ 346
PP+ R PS D+ E T L +++ N ++ N P +I W LQ
Sbjct: 287 PPVTAR-PSITLDNGQRSEDDLTHKLVDIIRINQRFMENREAGAP--QLIIEDLWELLQY 343
Query: 347 SVNVLFD----GKNAAGQRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
V D G A R SG + Q L+ KEG FR L GKRVN++ R+VISP
Sbjct: 344 HVTTFMDNEISGTPPARHR---SGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISP 400
Query: 398 DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
DP L++NE+G+P A +T V N+ + R + NG E HPGA +Y+ + P
Sbjct: 401 DPTLSLNEVGVPDRVATEMTQTMVVNEQNLERARRYVRNGPEGHPGA-NYVTR------P 453
Query: 458 PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIM 517
+++R++ K+ V+PG + V RHL DGD+++ NRQP+LH+ SIM
Sbjct: 454 DGRRVRVT--EKVCEELAERVEPGWE---------VQRHLIDGDIIIFNRQPSLHRMSIM 502
Query: 518 AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
AH V V+ KT R++ C YNADFDGDEMN+H Q+E +RAEA ++ Q + P
Sbjct: 503 AHEVVVMP-YKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAEARVLMRVQEQILSPR 561
Query: 578 NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISR 637
G+ + IQDHI LLT + N + LL + + + T + G +
Sbjct: 562 FGENIIGAIQDHISGTYLLTNDNPRFNETQASDLLRQTRIDELPAAAGTDEDGDQ----- 616
Query: 638 SEQEVLPLLPAIWKPEPLWTGKQVITAVL 666
WTG Q+ + +L
Sbjct: 617 -----------------YWTGHQIFSELL 628
Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 153/312 (49%), Gaps = 39/312 (12%)
Query: 750 EKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
+ ++I L+ G I + +YG +V T+ +++G+ A ++ ++ L + GF
Sbjct: 642 DTVVIEDGQLLEGTIADDEVGEYGSEIVDTITKVHGNTRARIFINEVASLAMRSIMHFGF 701
Query: 808 TCGVDDLLILKDKERERKNHLHGSE--------EIGKRVHLEALELEDGAEIDPIKLKSE 859
+ G+DD + + RER + S E + LE+L E +K+
Sbjct: 702 SIGIDDETVSTEA-RERIDEAIQSAYDRVQELIETYENGDLESLPGRTVDETLEMKIMQT 760
Query: 860 IEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKG 919
+ KA GD A FD N +M SGA+G
Sbjct: 761 LGKARDSAGDVAEENFDED----------------------------NPAVVMANSGARG 792
Query: 920 SKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEY 979
S +N Q++ +GQQ + G+R+ R +TL F P D + A GF+ + + +GL P+E+
Sbjct: 793 SMLNLTQMAGCVGQQAVRGERINRGYEDRTLSHFAPNDLSSEAHGFVENSYTSGLTPKEF 852
Query: 980 YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
+FH M GREGLVDTAV+TS+SGYLQR LI L L+ YD +VRD +IVQF +GEDG
Sbjct: 853 FFHAMGGREGLVDTAVRTSKSGYLQRRLINALSELETQYDGTVRDTSDTIVQFEFGEDGT 912
Query: 1040 DVHQTSFISKFD 1051
Q S + D
Sbjct: 913 SPVQVSSNEEVD 924
>sp|B0R8D4|RPOA1_HALS3 DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoA1 PE=1 SV=1
Length = 971
Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 193/689 (28%), Positives = 291/689 (42%), Gaps = 145/689 (21%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
CKTCGQR C GHFGHI+L P++ L++R
Sbjct: 62 CKTCGQRSGGCNGHFGHIELAA----PVIHVGFSKLIRR--------------------- 96
Query: 61 LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEWTSL 120
+++G SL L +E E R N D R+L+ Q+ + +
Sbjct: 97 ---LLRGTCRECASL---LLTEEEKDE--------------YRENLDRTRSLR-QDVSDV 135
Query: 121 QFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCN--L 178
A + E K +C P + + H + +++ L + +
Sbjct: 136 MTAAIR---------EARKKDHC----PHCGEVQYDVKHEKPTTYYEVQQVLASDYSERI 182
Query: 179 GETFSGGEEEKDLGAS-------SDVDAPETHS-FNGTF-PGTQDTAARRHQKGSGAVPS 229
+ E+E D G S +D+D + +G F P +D A G+
Sbjct: 183 AASMQPDEDEDDAGVSPQELAEQTDIDISRINEILSGEFRPRREDREAIETAIGADLTTE 242
Query: 230 GFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLV 289
K L+PSD++D E + + E SD + + L V+ V
Sbjct: 243 DMNK--------LMPSDIRDWFEDIPGEDLEALGVNSDRSRPEW--------MILTVLPV 286
Query: 290 PPIKFRLPSKGGDSVM--EHPQTVLLSKVLQANI-YLANAYVNQPDNAKVIVARWMNLQQ 346
PP+ R PS D+ E T L +++ N ++ N P +I W LQ
Sbjct: 287 PPVTAR-PSITLDNGQRSEDDLTHKLVDIIRINQRFMENREAGAP--QLIIEDLWELLQY 343
Query: 347 SVNVLFD----GKNAAGQRDMASG-----ICQLLEKKEGLFRQKLMGKRVNYACRSVISP 397
V D G A R SG + Q L+ KEG FR L GKRVN++ R+VISP
Sbjct: 344 HVTTFMDNEISGTPPARHR---SGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISP 400
Query: 398 DPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLP 457
DP L++NE+G+P A +T V N+ + R + NG E HPGA +Y+ + P
Sbjct: 401 DPTLSLNEVGVPDRVATEMTQTMVVNEQNLERARRYVRNGPEGHPGA-NYVTR------P 453
Query: 458 PNKKMRISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIM 517
+++R++ K+ V+PG + V RHL DGD+++ NRQP+LH+ SIM
Sbjct: 454 DGRRVRVT--EKVCEELAERVEPGWE---------VQRHLIDGDIIIFNRQPSLHRMSIM 502
Query: 518 AHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPS 577
AH V V+ KT R++ C YNADFDGDEMN+H Q+E +RAEA ++ Q + P
Sbjct: 503 AHEVVVMP-YKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAEARVLMRVQEQILSPR 561
Query: 578 NGDPLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISR 637
G+ + IQDHI LLT + N + LL + + + T + G +
Sbjct: 562 FGENIIGAIQDHISGTYLLTNDNPRFNETQASDLLRQTRIDELPAAAGTDEDGDQ----- 616
Query: 638 SEQEVLPLLPAIWKPEPLWTGKQVITAVL 666
WTG Q+ + +L
Sbjct: 617 -----------------YWTGHQIFSELL 628
Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 153/312 (49%), Gaps = 39/312 (12%)
Query: 750 EKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
+ ++I L+ G I + +YG +V T+ +++G+ A ++ ++ L + GF
Sbjct: 642 DTVVIEDGQLLEGTIADDEVGEYGSEIVDTITKVHGNTRARIFINEVASLAMRSIMHFGF 701
Query: 808 TCGVDDLLILKDKERERKNHLHGSE--------EIGKRVHLEALELEDGAEIDPIKLKSE 859
+ G+DD + + RER + S E + LE+L E +K+
Sbjct: 702 SIGIDDETVSTEA-RERIDEAIQSAYDRVQELIETYENGDLESLPGRTVDETLEMKIMQT 760
Query: 860 IEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKG 919
+ KA GD A FD N +M SGA+G
Sbjct: 761 LGKARDSAGDVAEENFDED----------------------------NPAVVMANSGARG 792
Query: 920 SKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEY 979
S +N Q++ +GQQ + G+R+ R +TL F P D + A GF+ + + +GL P+E+
Sbjct: 793 SMLNLTQMAGCVGQQAVRGERINRGYEDRTLSHFAPNDLSSEAHGFVENSYTSGLTPKEF 852
Query: 980 YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGV 1039
+FH M GREGLVDTAV+TS+SGYLQR LI L L+ YD +VRD +IVQF +GEDG
Sbjct: 853 FFHAMGGREGLVDTAVRTSKSGYLQRRLINALSELETQYDGTVRDTSDTIVQFEFGEDGT 912
Query: 1040 DVHQTSFISKFD 1051
Q S + D
Sbjct: 913 SPVQVSSNEEVD 924
>sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II subunit RPB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO21 PE=1
SV=2
Length = 1733
Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 135/382 (35%), Positives = 191/382 (50%), Gaps = 56/382 (14%)
Query: 292 IKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVL 351
I F +G D + T L+ +L+ANI L N + + A + LQ V
Sbjct: 250 ISFNESQRGEDDL-----TFKLADILKANISLETLEHNGAPHHAIEEAESL-LQFHVATY 303
Query: 352 FDGKNAAGQRDM-------ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVN 404
D + AGQ I L+ KEG R LMGKRV+++ R+VIS DP L ++
Sbjct: 304 MD-NDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELD 362
Query: 405 EIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRI 464
++G+P A LTYPE VTP+N+ +L + NG HPGA Y+ + S R+ +R
Sbjct: 363 QVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGA-KYVIRDSGDRI----DLRY 417
Query: 465 SIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVL 524
S R +Q G V RH+ D D VL NRQP+LHK S+MAH V+V+
Sbjct: 418 S-------KRAGDIQLQY-------GWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVI 463
Query: 525 KGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRS 584
T R++ + S YNADFDGDEMN+H PQ E +RAE + Q V P + P
Sbjct: 464 P-YSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMG 522
Query: 585 LIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLP 644
++QD + LT +DTF+ D+ +LY + + G V+P
Sbjct: 523 IVQDTLCGIRKLTLRDTFIELDQVLNMLY-------WVPDWDG--------------VIP 561
Query: 645 LLPAIWKPEPLWTGKQVITAVL 666
PAI KP+PLW+GKQ+++ +
Sbjct: 562 -TPAIIKPKPLWSGKQILSVAI 582
Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 157/291 (53%), Gaps = 23/291 (7%)
Query: 752 LLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTC 809
+LI ++ GV++K ++ GL+H V G L + ++ +L +GF+
Sbjct: 605 MLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFST 664
Query: 810 GVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGD 869
G+ D + RE + E K+V L++ A+ + + K + +R +
Sbjct: 665 GIGDTIADGPTMREITETI---AEAKKKV----LDVTKEAQANLLTAKHGM--TLRESFE 715
Query: 870 AAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISS 929
V F + + + L+E LK N + M +G+KGS +N Q+S+
Sbjct: 716 DNVVRFLNEARDKAGR----------LAEVNLKDL--NNVKQMVMAGSKGSFINIAQMSA 763
Query: 930 HLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREG 989
+GQQ +EGKR+ +TLP F D++P + GF+ + +L GL PQE++FH M GREG
Sbjct: 764 CVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREG 823
Query: 990 LVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
L+DTAVKT+ +GY+QR L+K LE + + YD + R++ G+++QF YGEDG+D
Sbjct: 824 LIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMD 874
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 62/88 (70%), Gaps = 4/88 (4%)
Query: 1122 MAKQDF---LKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTL 1178
+ KQ F L ++ +F+ S+ PGE VG+LA+QS+GEP+TQMTLNTFH AG VT
Sbjct: 1037 LTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTS 1096
Query: 1179 GIPRLQEILTIASKDIKTPVITCPLLVG 1206
G+PRL+EIL +A K++KTP +T L G
Sbjct: 1097 GVPRLKEILNVA-KNMKTPSLTVYLEPG 1123
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
C+TC + CPGHFGHIDL PV++ + + + +C C
Sbjct: 67 CQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHC 110
>sp|P42486|RPB1_ASFB7 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (strain Badajoz 1971 Vero-adapted)
GN=Ba71V-99 PE=3 SV=1
Length = 1450
Score = 186 bits (473), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 178/693 (25%), Positives = 293/693 (42%), Gaps = 137/693 (19%)
Query: 364 ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVT 423
A I + L +KEG R+ L+G +V RS I + L ++E+G P FA L E V
Sbjct: 296 APSIMRRLPRKEGRIRKSLLGSQVWSISRSTICGNSDLHLDEVGYPISFARTLQVAETVQ 355
Query: 424 PWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKD 483
+N+ +L +NG +PG + + +++ S I G
Sbjct: 356 HYNINRLMPYFLNGKRQYPGCSR-------------------VYKQITQSVHDI--EGLK 394
Query: 484 SDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK--TLRMHYANCSTY 540
D E G ++YR + GDV NRQP+L + SI H + VL+ K T +M+ + C+ Y
Sbjct: 395 QDFRLEVGDILYRDVVTGDVAFFNRQPSLERSSIGVHRIVVLENPKISTFQMNVSACAWY 454
Query: 541 NADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKD 600
NADFDGD+MN+ P +SR EA + + N ++ + P+ +QD V + LLT+ +
Sbjct: 455 NADFDGDQMNLWVPWSVMSRVEAELLCSVRNWFISTKSSGPVNGQVQDSTVGSFLLTRTN 514
Query: 601 TFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQ 660
T + ++ +L +G F ++ Q P A + P L GK
Sbjct: 515 TPMGKNVMNKL--------HAMGLF-----------QTTQTDPPCF-ANYSPTDLLDGKS 554
Query: 661 VITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKS 720
V++ +L + P +R + + MH +K
Sbjct: 555 VVSMLLK-----QTPINYQRAPTWYSEVYAP----------------------YMHYNKQ 587
Query: 721 GKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF---ADYGLVHT 777
++ G +L+ GV+DK + G+ H
Sbjct: 588 DISTQIRNG----------------------------ELIEGVLDKKAVGAGSSGGIYHL 619
Query: 778 VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKR 837
+ YG A ++ A +L +++ GFT D+L+ + +E +EI +
Sbjct: 620 ISRRYGPQQALKMIFATQQLALNYVRNAGFTVSTADMLLTPEAHQE-------VQEIINK 672
Query: 838 VHLEALELED----GAEIDPIKLKSE--IEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSV 891
+ LE+ E+ + G + PI L + EK +K ++ K +S+
Sbjct: 673 LLLESEEINNRLLHGDIMPPIGLTTHDFYEKLQLNA---------LKFPDRILKPIMNSI 723
Query: 892 INELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRV-PRMVSGKTL 950
E + GL + M +GAKGS N I + +GQ E+ +R+ P+ G+TL
Sbjct: 724 NPE--TNGLFQ---------MVATGAKGSNPNMIHIMAGIGQIEINTQRIQPQFSFGRTL 772
Query: 951 PSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1010
+ + +A GFI + ++ GL E+ F M GR L++ A+ TS +GY R I
Sbjct: 773 VYYPRFALEAQAYGFICNSYIAGLTSPEFIFGEMNGRFDLINKALSTSSTGYANRKAIFG 832
Query: 1011 LECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
L+ + Y Y D +VQ YGEDG+D Q
Sbjct: 833 LQSCIVDY-YRRVSIDTRLVQQLYGEDGLDARQ 864
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
L L++ ++ SL GE VG+LA+QSV EP TQ L++ H + G N + GI R QEI
Sbjct: 1022 ILDLIRLQYTQSLINYGEAVGILAAQSVSEPLTQYMLDSHHRSVAGGTNKS-GIVRPQEI 1080
Query: 1187 LT 1188
+
Sbjct: 1081 FS 1082
Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 27/64 (42%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
C TC ++ C GH G + + PV PL + L+ IC C + E +R
Sbjct: 59 CITCSHQRKQCMGHPGILQMHAPVLQPLFIAEIRRWLRVICLNCGAPIVDLKRYEHLIRP 118
Query: 61 LELI 64
LI
Sbjct: 119 KRLI 122
>sp|Q65215|RPB1_ASFM2 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Tick/Malawi/Lil 20-1/1983)
GN=Mal-107 PE=3 SV=2
Length = 1450
Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 179/693 (25%), Positives = 291/693 (41%), Gaps = 137/693 (19%)
Query: 364 ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVT 423
A I + L +KEG R+ L+G +V RS I + L ++E+G P FA L E V
Sbjct: 296 APSIMRRLPRKEGRIRKSLLGSQVWSISRSTICGNSDLHLDEVGYPISFARTLQVAETVQ 355
Query: 424 PWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKD 483
+N+ +L +NG +PG + + +++ S I G
Sbjct: 356 HYNINRLMPYFLNGKRQYPGCSR-------------------VYKQITQSVHDI--EGLK 394
Query: 484 SDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK--TLRMHYANCSTY 540
D E G ++YR + GDV NRQP+L + SI H + VL+ K T +M+ + C+ Y
Sbjct: 395 QDFRLEVGDILYRDVVTGDVAFFNRQPSLERSSIGVHRIVVLENPKISTFQMNVSACAWY 454
Query: 541 NADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKD 600
NADFDGD+MN+ P +SR EA + + N ++ + P+ +QD V + LLT+ +
Sbjct: 455 NADFDGDQMNLWVPWSVMSRVEAELLCSVRNWFISTKSSGPVNGQVQDSTVGSFLLTRTN 514
Query: 601 TFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQ 660
T + ++ +L +G F ++ Q P A + P L GK
Sbjct: 515 TPMGKNVMNKL--------HAMGLF-----------QTTQTDPPCF-ANYSPTDLLDGKS 554
Query: 661 VITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKS 720
V++ +L + P +R + + MH +K
Sbjct: 555 VVSMLLK-----QTPINYQRAPTWYSEVYAP----------------------YMHYNKQ 587
Query: 721 GKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF---ADYGLVHT 777
++ G +L+ GV+DK + G+ H
Sbjct: 588 DISTQIRNG----------------------------ELIEGVLDKKAVGAGSSGGIYHL 619
Query: 778 VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLH----GSEE 833
+ YG A ++ A +L +++ GFT D+L+ + +E + ++ SEE
Sbjct: 620 ISRRYGPQQALKMIFATQQLALNYVRNAGFTVSTADMLLTPEAHQEVQEIINELLLESEE 679
Query: 834 IGKRVHLEALELEDGAEIDPIKLKSE--IEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSV 891
I R L G + PI L + EK +K ++ K +S+
Sbjct: 680 INNR-------LLHGDIMPPIGLTTHDFYEKLQLNA---------LKFPDRILKPIMNSI 723
Query: 892 INELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRV-PRMVSGKTL 950
E + GL + M +GAKGS N I + +GQ E+ +R+ P+ G+TL
Sbjct: 724 NPE--TNGLFQ---------MVATGAKGSNPNMIHIMAGIGQIEINTQRIQPQFSFGRTL 772
Query: 951 PSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1010
+ + +A GFI + ++ GL E+ F M GR L++ A+ TS +GY R I
Sbjct: 773 VYYPRFALEAQAYGFICNSYIAGLTSPEFIFGEMNGRFDLINKALSTSSTGYANRKAIFG 832
Query: 1011 LECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
L+ + Y Y D +VQ YGEDG+D Q
Sbjct: 833 LQSCIVDY-YRRVSIDTRLVQQLYGEDGLDARQ 864
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
L L++ ++ SL GE VG+LA+QSV EP TQ L++ H + G N + GI R QEI
Sbjct: 1022 ILDLIRLQYTQSLINYGEAVGILAAQSVSEPLTQYMLDSHHRSVAGGTNKS-GIVRPQEI 1080
Query: 1187 LT 1188
+
Sbjct: 1081 FS 1082
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
C TC ++ C GH G + + PV PL + L+ IC C + E +R
Sbjct: 59 CITCSHQRKQCMGHPGILQMHAPVLQPLFIAEIRRWLRVICLNCGAPIVDLKRYEHLIRP 118
Query: 61 LELI 64
L+
Sbjct: 119 KRLV 122
>sp|P0C988|RPB1_ASFWA Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Warthog/Namibia/Wart80/1980)
GN=War-109 PE=3 SV=1
Length = 1450
Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 179/693 (25%), Positives = 291/693 (41%), Gaps = 137/693 (19%)
Query: 364 ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVT 423
A I + L +KEG R+ L+G +V RS I + L ++E+G P FA L E V
Sbjct: 296 APSIMRRLPRKEGRIRKSLLGSQVWSISRSTICGNSDLHLDEVGYPISFARTLQVAETVQ 355
Query: 424 PWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKD 483
+N+ +L +NG +PG + + +++ S I G
Sbjct: 356 HYNINRLMPYFLNGKRQYPGCSR-------------------VYKQITQSVHDI--EGLK 394
Query: 484 SDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK--TLRMHYANCSTY 540
D E G ++YR + GDV NRQP+L + SI H + VL+ K T +M+ + C+ Y
Sbjct: 395 QDFRLEVGDILYRDVVTGDVAFFNRQPSLERSSIGVHRIVVLENPKISTFQMNVSACAWY 454
Query: 541 NADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKD 600
NADFDGD+MN+ P +SR EA + + N ++ + P+ +QD V + LLT+ +
Sbjct: 455 NADFDGDQMNLWVPWSVMSRVEAELLCSVRNWFISTKSSGPVNGQVQDSTVGSFLLTRTN 514
Query: 601 TFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQ 660
T + ++ +L +G F ++ Q P A + P L GK
Sbjct: 515 TPMGKNVMNKL--------HAMGLF-----------QTTQTDPPCF-ANYSPTDLLDGKS 554
Query: 661 VITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKS 720
V++ +L + P +R + + MH +K
Sbjct: 555 VVSMLLR-----QTPINYQRAPTWYSEVYAP----------------------YMHYNKQ 587
Query: 721 GKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF---ADYGLVHT 777
++ G +L+ GV+DK + G+ H
Sbjct: 588 DISTQIRNG----------------------------ELIEGVLDKKAVGAGSSGGIYHL 619
Query: 778 VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLH----GSEE 833
+ YG A ++ A +L +++ GFT D+L+ + +E + ++ SEE
Sbjct: 620 ISRRYGPQQALKMIFATQQLALNYVRNAGFTVSTADMLLTPEAHQEVQEIINELLLESEE 679
Query: 834 IGKRVHLEALELEDGAEIDPIKLKSE--IEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSV 891
I R L G + PI L + EK +K ++ K +S+
Sbjct: 680 INNR-------LLHGDIMPPIGLTTHDFYEKLQLNA---------LKFPDRILKPIMNSI 723
Query: 892 INELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRV-PRMVSGKTL 950
E + GL + M +GAKGS N I + +GQ E+ +R+ P+ G+TL
Sbjct: 724 NPE--TNGLFQ---------MVATGAKGSNPNMIHIMAGIGQIEINTQRIQPQFSFGRTL 772
Query: 951 PSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1010
+ + +A GFI + ++ GL E+ F M GR L++ A+ TS +GY R I
Sbjct: 773 VYYPRFALEAQAYGFICNSYIAGLTSPEFIFGEMNGRFDLINKALSTSSTGYANRKAIFG 832
Query: 1011 LECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
L+ + Y Y D +VQ YGEDG+D Q
Sbjct: 833 LQSCIVDY-YRRVSIDTRLVQQLYGEDGLDARQ 864
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
L L++ ++ SL GE VG+LA+QSV EP TQ L++ H + G N + GI R QEI
Sbjct: 1022 ILDLIRLQYTQSLINYGEAVGILAAQSVSEPLTQYMLDSHHRSVAGGTNKS-GIVRPQEI 1080
Query: 1187 LT 1188
+
Sbjct: 1081 FS 1082
Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 27/64 (42%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
C TC ++ C GH G + + PV PL + L+ IC C + E +R
Sbjct: 59 CITCSHQRKQCMGHPGILQMHAPVLQPLFIAEIRRWLRVICLNCGAPIVDLKRYEHLIRP 118
Query: 61 LELI 64
LI
Sbjct: 119 KRLI 122
>sp|P0C987|RPB1_ASFP4 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Tick/South Africa/Pretoriuskop
Pr4/1996) GN=Pret-111 PE=3 SV=1
Length = 1450
Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 179/693 (25%), Positives = 291/693 (41%), Gaps = 137/693 (19%)
Query: 364 ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVT 423
A I + L +KEG R+ L+G +V RS I + L ++E+G P FA L E V
Sbjct: 296 APSIMRRLPRKEGRIRKSLLGSQVWSISRSTICGNSDLHLDEVGYPISFARTLQVAETVQ 355
Query: 424 PWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKD 483
+N+ +L +NG +PG + + +++ S I G
Sbjct: 356 HYNINRLMPYFLNGKRQYPGCSR-------------------VYKQITQSVHDI--EGLK 394
Query: 484 SDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK--TLRMHYANCSTY 540
D E G ++YR + GDV NRQP+L + SI H + VL+ K T +M+ + C+ Y
Sbjct: 395 QDFRLEVGDILYRDVVTGDVAFFNRQPSLERSSIGVHRIVVLENPKISTFQMNVSACAWY 454
Query: 541 NADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKD 600
NADFDGD+MN+ P +SR EA + + N ++ + P+ +QD V + LLT+ +
Sbjct: 455 NADFDGDQMNLWVPWSVMSRVEAELLCSVRNWFISTKSSGPVNGQVQDSTVGSFLLTRTN 514
Query: 601 TFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQ 660
T + ++ +L +G F ++ Q P A + P L GK
Sbjct: 515 TPMGKNVMNKL--------HAMGLF-----------QTTQTDPPCF-ANYSPTDLLDGKS 554
Query: 661 VITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKS 720
V++ +L + P +R + + MH +K
Sbjct: 555 VVSMLLR-----QTPINYQRAPTWYSEVYAP----------------------YMHYNKQ 587
Query: 721 GKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF---ADYGLVHT 777
++ G +L+ GV+DK + G+ H
Sbjct: 588 DISTQIRNG----------------------------ELIEGVLDKKAVGAGSSGGIYHL 619
Query: 778 VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLH----GSEE 833
+ YG A ++ A +L +++ GFT D+L+ + +E + ++ SEE
Sbjct: 620 ISRRYGPQQALKMIFATQQLALNYVRNAGFTVSTADMLLTPEAHQEVQEIINELLLESEE 679
Query: 834 IGKRVHLEALELEDGAEIDPIKLKSE--IEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSV 891
I R L G + PI L + EK +K ++ K +S+
Sbjct: 680 INNR-------LLHGDIMPPIGLTTHDFYEKLQLNA---------LKFPDRILKPIMNSI 723
Query: 892 INELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRV-PRMVSGKTL 950
E + GL + M +GAKGS N I + +GQ E+ +R+ P+ G+TL
Sbjct: 724 NPE--TNGLFQ---------MVATGAKGSNPNMIHIMAGIGQIEINTQRIQPQFSFGRTL 772
Query: 951 PSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1010
+ + +A GFI + ++ GL E+ F M GR L++ A+ TS +GY R I
Sbjct: 773 VYYPRFALEAQAYGFICNSYIAGLTSPEFIFGEMNGRFDLINKALSTSSTGYANRKAIFG 832
Query: 1011 LECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
L+ + Y Y D +VQ YGEDG+D Q
Sbjct: 833 LQSCIVDY-YRRVSIDTRLVQQLYGEDGLDARQ 864
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
L L++ ++ SL GE VG+LA+QSV EP TQ L++ H + G N + GI R QEI
Sbjct: 1022 ILDLIRLQYTQSLINYGEAVGILAAQSVSEPLTQYMLDSHHRSVAGGTNKS-GIVRPQEI 1080
Query: 1187 LT 1188
+
Sbjct: 1081 FS 1082
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 27/64 (42%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
C TC ++ C GH G + + PV PL + L+ IC C + E +R
Sbjct: 59 CITCSHQRKQCMGHPGILQMHAPVLQPLFIAEIRRWLRVICLNCGAPIVDLKRYEHLIRP 118
Query: 61 LELI 64
LI
Sbjct: 119 KRLI 122
>sp|P0C989|RPB1_ASFK5 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Pig/Kenya/KEN-50/1950)
GN=Ken-111 PE=3 SV=1
Length = 1450
Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 178/693 (25%), Positives = 290/693 (41%), Gaps = 137/693 (19%)
Query: 364 ASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVT 423
A I + L +KEG R+ L+G +V RS I + L ++E+G P FA L E V
Sbjct: 296 APSIMRRLPRKEGRIRKSLLGSQVWSISRSTICGNSDLHLDEVGYPISFARTLQVAETVQ 355
Query: 424 PWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGKD 483
+N+ +L +NG +PG + + +++ S I G
Sbjct: 356 HYNINRLMPYFLNGKRQYPGCSR-------------------VYKQITQSVHDI--EGLK 394
Query: 484 SDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK--TLRMHYANCSTY 540
D E G ++YR + GDV NRQP+L + SI H + VL+ K T +M+ + C+ Y
Sbjct: 395 QDFRLEVGDILYRDVVTGDVAFFNRQPSLERSSIGVHRIVVLENPKISTFQMNVSACAWY 454
Query: 541 NADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKD 600
NADFDGD+MN+ P +SR EA + + N ++ + P+ +QD V + LLT+ +
Sbjct: 455 NADFDGDQMNLWVPWSVMSRVEAELLCSVRNWFISTKSSGPVNGQVQDSTVGSFLLTRTN 514
Query: 601 TFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQ 660
T + ++ +L +G F ++ Q P A + P L GK
Sbjct: 515 TPMGKNVMNKL--------HAMGLF-----------QTTQTDPPCF-ANYSPTDLLDGKL 554
Query: 661 VITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKS 720
V++ +L + P +R + + + +KQ + G+L
Sbjct: 555 VVSMLLK-----QTPINYQRAPTWYSEVYAPYMHYNKQDISTQIRNGEL----------- 598
Query: 721 GKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQF---ADYGLVHT 777
+ GV+DK + G+ H
Sbjct: 599 ---------------------------------------IEGVLDKKAVGAGSSGGIYHL 619
Query: 778 VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLH----GSEE 833
+ YG A ++ A +L +++ GFT D+L+ + +E + ++ SEE
Sbjct: 620 ISRRYGPQQALKMIFATQQLALNYVRNAGFTVSTADMLLTPEAHQEVQEIINELLLESEE 679
Query: 834 IGKRVHLEALELEDGAEIDPIKLKSE--IEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSV 891
I R L G + PI L + EK +K ++ K +S+
Sbjct: 680 INNR-------LLHGDIMPPIGLTTHDFYEKLQLNA---------LKFPDRILKPIMNSI 723
Query: 892 INELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRV-PRMVSGKTL 950
E + GL + M +GAKGS N I + +GQ E+ +R+ P+ G+TL
Sbjct: 724 NPE--TNGLFQ---------MVATGAKGSNPNMIHIMAGIGQIEINTQRIQPQFSFGRTL 772
Query: 951 PSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1010
+ + +A GFI + ++ GL E+ F M GR L++ A+ TS +GY R I
Sbjct: 773 VYYPRFALEAQAYGFICNSYIAGLTSPEFIFGEMNGRFDLINKALSTSSTGYANRKAIFG 832
Query: 1011 LECLKISYDYSVRDADGSIVQFCYGEDGVDVHQ 1043
L+ + Y Y D +VQ YGEDG+D Q
Sbjct: 833 LQSCIVDY-YRRVSIDTRLVQQLYGEDGLDARQ 864
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
L L++ ++ SL GE VG+LA+QSV EP TQ L++ H + G N + GI R QEI
Sbjct: 1022 ILDLIRLQYTQSLINYGEAVGILAAQSVSEPLTQYMLDSHHRSVAGGTNKS-GIVRPQEI 1080
Query: 1187 LT 1188
+
Sbjct: 1081 FS 1082
>sp|P09846|RPOA1_METTW DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoA1 PE=3 SV=2
Length = 865
Score = 183 bits (464), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 144/442 (32%), Positives = 217/442 (49%), Gaps = 85/442 (19%)
Query: 242 LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPS--- 298
L PS+V++ +E++ +N+ L ++ + + L V+ VPP+ R PS
Sbjct: 171 LTPSEVRERLERITDNDSLLLGVNPEVARPEW--------MVLTVLPVPPVTVR-PSITL 221
Query: 299 KGGDSVMEHPQTVLLSKVLQANIYL-ANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNA 357
+ G+ E T L +L+ N L N P ++ W LQ V FD + +
Sbjct: 222 ETGER-SEDDLTHKLVDILRINQRLKENMEAGAPQ--LIVEDLWELLQYHVTTYFDNEAS 278
Query: 358 A-------GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPP 410
R + + + Q L+ KEG FR L GKRVN++ R+V+SPDP ++VNE+G+P
Sbjct: 279 GVPPARHRSGRPLKT-LAQRLKGKEGRFRSNLSGKRVNFSARTVVSPDPNVSVNEVGVPE 337
Query: 411 YFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKL 470
A +T P VT WN+ ++++ I NG ++HPGA + + P +K+ R
Sbjct: 338 LIAKEVTVPVYVTEWNIDRMKEHIENGPDVHPGANYVIR-------PDGRKI-----RAY 385
Query: 471 DTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTL 530
+ ++ +++ N G +V RHL+DGD+VL NRQP+LH+ S+MAH VRVL KT
Sbjct: 386 NETKDVVLE------NLKPGYIVERHLKDGDIVLFNRQPSLHRMSMMAHEVRVLP-YKTF 438
Query: 531 RMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHI 590
R++ C YNADFDGDEMN+H Q E SRAEA ++ +QDHI
Sbjct: 439 RLNLCVCPPYNADFDGDEMNMHVFQTEESRAEAKTLMR-----------------VQDHI 481
Query: 591 VSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIW 650
+S RD SSGV ++ T G+R+ RS P P
Sbjct: 482 LSPRF---------RD------LSSGVYTTISQEHTSSQGKRLFSVRSR----PPDPQEG 522
Query: 651 KPEP------LWTGKQVITAVL 666
+ P WT K++ + VL
Sbjct: 523 RAPPPDREGREWTVKEIFSMVL 544
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 151/322 (46%), Gaps = 50/322 (15%)
Query: 752 LLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTC 809
++I L+ GVID+ + + ++ + + YGS+ A L + ++L + GFT
Sbjct: 574 VVIENGQLITGVIDEKAYGAFAGKILDQIVKEYGSDAAKEFLDSATKLAIAGIMHAGFTT 633
Query: 810 GVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPI-----------KLKS 858
+D I ++ + + HL +E RV + +E + E++P+ K+
Sbjct: 634 STNDEEIPEEAKERIEAHLRNAE---ARVD-QLIEAYENGELEPLPGRSLEETLEMKIMQ 689
Query: 859 EIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAK 918
+ +A G+ A +YFDM +N +M +GA+
Sbjct: 690 VLGEAKDKSGEIAESYFDMD---------------------------ENHAVIMALTGAR 722
Query: 919 GSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQE 978
G+ +N QI++ +GQQ + G R+ R +TLP F + ++ GF+ + +
Sbjct: 723 GAMLNLTQITACVGQQSVHGGRITRGYDNRTLPHFKKGELGAKSRGFVHSSY----KEDS 778
Query: 979 YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDG 1038
M GREGLVDTA++T++SGY+QR L+ L+ L + + V D G I+Q +GEDG
Sbjct: 779 ILLEFMGGREGLVDTAIRTAQSGYMQRRLVNALQDLTVDENGRVVDNRGVIIQTRFGEDG 838
Query: 1039 VDVHQTSF--ISKFDALAARER 1058
VD ++ + I D L R
Sbjct: 839 VDPAKSDYGKIVDLDKLVQEIR 860
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVE 55
C++CG + CPGHFG I+L PV + + ++ +L IC C + E++
Sbjct: 60 CRSCGAKGGECPGHFGSINLARPVIHVGFADTIHKILSSICRKCSRILLTETEIQ 114
>sp|Q75A34|RPB1_ASHGO DNA-directed RNA polymerase II subunit RPB1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB1 PE=3 SV=2
Length = 1745
Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 131/386 (33%), Positives = 188/386 (48%), Gaps = 64/386 (16%)
Query: 292 IKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVN-QPDNAKVIVARWMNLQQSVNV 350
I F +G D + T L +L+ANI + +N P + VI LQ V
Sbjct: 250 ISFNESQRGEDDL-----TYKLGDILKANINVQRLEINGSPQH--VIQESESLLQFHVAT 302
Query: 351 LFDGKNAAGQRDMAS-------GICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
D + AGQ I L+ KEG R LMGKRV+++ R+VIS DP L +
Sbjct: 303 YMD-NDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDL 361
Query: 404 NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMR 463
+++G+P A LTYPE VTP+N+ +L + NG HPGA + +
Sbjct: 362 DQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIR-------------- 407
Query: 464 ISIGRKLD---TSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHV 520
G ++D + R +Q G V RH+ D D VL NRQP+LHK S+MAH
Sbjct: 408 -DNGDRIDLRYSKRAGDIQLQY-------GWKVERHIMDDDPVLFNRQPSLHKMSMMAHR 459
Query: 521 VRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGD 580
V+V+ T R++ + S YNADFDGDEMN+H PQ E +RAE + Q V P +
Sbjct: 460 VKVMP-YSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNK 518
Query: 581 PLRSLIQDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQ 640
P ++QD + +T +DTF+ D+ +LY + + G
Sbjct: 519 PCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLY-------WIPDWDG------------- 558
Query: 641 EVLPLLPAIWKPEPLWTGKQVITAVL 666
V+P P I KP+PLW+GKQ+++ +
Sbjct: 559 -VIP-TPTILKPKPLWSGKQLLSMAI 582
Score = 163 bits (412), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 157/295 (53%), Gaps = 31/295 (10%)
Query: 752 LLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTC 809
+LI ++ GV+DK GL+H V G L + ++ +L +GF+
Sbjct: 605 MLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPEVCAKLFGNIQKVVNYWLLHNGFSI 664
Query: 810 GVDDLLILKDKERERKNHLHGS----EEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMR 865
G+ D + + RE + + + EE+ K L + G + L+ E
Sbjct: 665 GIGDTIADEKTMREITDAIALAKKKVEEVTKEAQANLLTAKHG-----MTLRESFE---- 715
Query: 866 GGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQ 925
D V Y + +K S+ +N LK N + M ++G+KGS +N
Sbjct: 716 ---DNVVRY----LNEARDKAGRSAEVN-------LKDL--NNVKQMVSAGSKGSFINIA 759
Query: 926 QISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMA 985
Q+S+ +GQQ +EGKR+ + +TLP F D++P + GF+ + +L GL PQE++FH M
Sbjct: 760 QMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMG 819
Query: 986 GREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
GREGL+DTAVKT+ +GY+QR L+K LE + + YD + R++ G+I+QF YGEDG+D
Sbjct: 820 GREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFVYGEDGMD 874
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 61/85 (71%), Gaps = 4/85 (4%)
Query: 1122 MAKQDF---LKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTL 1178
+ KQ F L ++ +F+ S+ PGE VG+LA+QS+GEP+TQMTLNTFH AG VT
Sbjct: 1037 LTKQTFEWVLNNIEAQFLRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTS 1096
Query: 1179 GIPRLQEILTIASKDIKTPVITCPL 1203
G+PRL+EIL +A K++KTP +T L
Sbjct: 1097 GVPRLKEILNVA-KNMKTPSLTVYL 1120
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
C+TCG+ CPGHFGHI+L PV++ + + + + +C C
Sbjct: 67 CQTCGEGMNDCPGHFGHIELAKPVFHIGFISKIKKVCECVCMHC 110
>sp|Q03585|RPOA1_THEAC DNA-directed RNA polymerase subunit A' OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoA1 PE=3 SV=1
Length = 885
Score = 176 bits (447), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 192/380 (50%), Gaps = 32/380 (8%)
Query: 242 LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGG 301
+ P ++++ +E++ +++ F K A L V+ VPPI R PS
Sbjct: 177 ITPKEIRERLERIPDDDLIFFGFNP--------KTARPEWMVLTVLPVPPINVR-PSITL 227
Query: 302 DSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAK---VIVARWMNLQQSVNVLFD----G 354
++ E + L K++ I ++ DN +I W LQ V FD G
Sbjct: 228 ET-GERSEDDLTHKLVDI-IRISQRLRESRDNGSPQLIIEDLWDLLQFHVTTYFDNQTPG 285
Query: 355 KNAAGQRD--MASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYF 412
A R + Q L+ KEG FR L GKRV+++ R+VISP+PYL+VNE+G+P
Sbjct: 286 IPPARHRSGRALKTLVQRLKGKEGRFRSNLSGKRVSFSSRTVISPEPYLSVNEVGVPERA 345
Query: 413 ALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDT 472
A LT P V +N+ ++R+ I G Y+ ++ + P ++++I T
Sbjct: 346 ARELTVPVIVNQFNIDEMRELIKRGRNPRDQFGRYVTGVNYVIRPDGRRIKI-------T 398
Query: 473 SRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 532
+ A +++D G V R L +GD+VL NRQP+LH+ S+M H VR+L G+ T R
Sbjct: 399 DQNA----AENADRIDIGWTVERQLMEGDIVLFNRQPSLHRMSMMGHTVRILPGQ-TFRF 453
Query: 533 HYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVS 592
+ A C+ YNADFDGDEMN+H Q E +RAEA I+ Q + P G P+ I DH+ +
Sbjct: 454 NLAVCTPYNADFDGDEMNLHVIQKEEARAEARIIMKVQEQIMSPRFGGPIIGGIHDHVTA 513
Query: 593 AALLTKKDTFLNRDEFCQLL 612
LLT + +E ++
Sbjct: 514 LFLLTHNNPRYTHEEMVHIM 533
Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 150/306 (49%), Gaps = 37/306 (12%)
Query: 744 EKELSEEKLLIYKNDLVRGVIDKAQFADY--GLVHTVQELYGSNTAGTLLSALSRLFTVF 801
E + S+ + I ++ G ID+A + + ++ + +GS A + ++RL F
Sbjct: 586 EDDPSDTYVEIVDGKMIHGTIDEAAVSPFSGAIIDKIFRKFGSQEAARFIDRMTRLAVGF 645
Query: 802 LQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIE 861
+ GF+ G+ D I E R+ + ED ++ IE
Sbjct: 646 ITYRGFSTGISDYDI--------------PESAVARIEELVAQAED-------RINKLIE 684
Query: 862 KAMRGG-----GDAAVAYFDMKMTSQ--LNKHTSSSVINELLSEGLLKPTGKNWISLMTT 914
RG G + +M++ S+ + + S + + L GL P+ +M
Sbjct: 685 TFRRGELQPAPGRSVEDTLEMEILSEAGVVRDESGKIASSYL--GLKVPS-----VIMAR 737
Query: 915 SGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGL 974
SGA+ + +N +++ +GQQ + G R+ R +TLP F D A GF+ ++TGL
Sbjct: 738 SGARATMLNISEVAGIVGQQSVRGGRLNRGYYNRTLPHFKRGDIGADARGFVRSSYMTGL 797
Query: 975 RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCY 1034
P EY+FH + GREGLVDTAV+TSRSGY+QR LI E LK+ V+D GS++Q Y
Sbjct: 798 SPTEYFFHSIGGREGLVDTAVRTSRSGYMQRRLINAFEDLKVDDSREVKDTVGSLIQIRY 857
Query: 1035 GEDGVD 1040
GEDG+D
Sbjct: 858 GEDGID 863
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKCVRK 60
C TCG + CPGHFGHI+L +PV + + L C C K + E+ + +
Sbjct: 60 CATCGGKVDECPGHFGHIELAMPVVHVGFVKEIKMFLDATCRSCGRIKLTDDEIRTYLPE 119
Query: 61 LELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPR 103
++ +D E+ +PED ++ K + + R
Sbjct: 120 IQ-----------KMDF----ETGDPEDIEILTKKYVDLASQR 147
>sp|P17545|RPB1B_TRYBB DNA-directed RNA polymerase II subunit RPB1-B OS=Trypanosoma brucei
brucei GN=TRP5.9 PE=1 SV=1
Length = 1766
Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/321 (36%), Positives = 169/321 (52%), Gaps = 63/321 (19%)
Query: 367 ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
+ + L+ K G R LMGKRV+++ R+VI+ DP + V+E+G+P A+ LT+PERV N
Sbjct: 333 LTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTIN 392
Query: 427 VVKL----RDSIINGAEI--HPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP 480
+L R ++ A HP T + KL+ +R K+ ++IG
Sbjct: 393 KKRLTEFARRTVYPSANYIHHPNGT--ITKLALLR--DRSKVTLNIG------------- 435
Query: 481 GKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTY 540
+V RH+ +GDVVL NRQPTLH+ S+M H VRVL T R++ + + Y
Sbjct: 436 ----------DVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLN-YNTFRLNLSCTTPY 484
Query: 541 NADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKD 600
NADFDGDEMN+H PQ +++AE ++ +V P+ P ++QD ++ + LT KD
Sbjct: 485 NADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKD 544
Query: 601 TFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQ 660
TFL++ F Q S L + LP +PAI KP PLWTGKQ
Sbjct: 545 TFLDK-YFVQ--------SVALWLDLWQ--------------LP-IPAILKPRPLWTGKQ 580
Query: 661 VITAVL---NH--ITRGRPPF 676
V + +L NH + RPPF
Sbjct: 581 VFSLILPEVNHPATPQDRPPF 601
Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 152/291 (52%), Gaps = 23/291 (7%)
Query: 752 LLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTC 809
++I + L+ G I K+ A L+H + +GS+ ++ + R+ T FL GF+
Sbjct: 608 VMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSV 667
Query: 810 GVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGD 869
GV D + D R+ + L + R ++E + GA + L R G
Sbjct: 668 GVQDTVADSDTLRQMNDVL-----VKTRRNVEKI----GAAANNRTLN-------RKAGM 711
Query: 870 AAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISS 929
+ F+ + S LNK E + L N +M +G+KG+ +N QI+
Sbjct: 712 TLLQSFEADVNSALNK-----CREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNICQIAV 766
Query: 930 HLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREG 989
+GQQ + G R+P +TLP F D+ + G ++ GL+P E++FH MAGREG
Sbjct: 767 FVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREG 826
Query: 990 LVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
L+DTAVKTS +GYLQR LIK LE + +YD +VR+A+ ++QF YGEDG+D
Sbjct: 827 LIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANDELIQFMYGEDGLD 877
Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
N+ A + LK ++ K+ SL PGE +G +A+QS GEP+TQMTLNTFH AG NVTLG
Sbjct: 1059 NDRAFEYLLKEIRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLG 1118
Query: 1180 IPRLQEILTIASKDIKTPVITCPLL 1204
+PRL E+L + S++ K +T L
Sbjct: 1119 VPRLLELLNV-SRNQKHASMTVSLF 1142
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
C+TC ++ CPGHFG+I+L PV+N +F+L+ +LK +C C + RE
Sbjct: 69 CETCHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLLNTRE 121
>sp|P17546|RPB1A_TRYBB DNA-directed RNA polymerase II subunit RPB1-A OS=Trypanosoma brucei
brucei GN=TRP4.8 PE=1 SV=1
Length = 1766
Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/321 (36%), Positives = 169/321 (52%), Gaps = 63/321 (19%)
Query: 367 ICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 426
+ + L+ K G R LMGKRV+++ R+VI+ DP + V+E+G+P A+ LT+PERV N
Sbjct: 333 LTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVN 392
Query: 427 VVKL----RDSIINGAEI--HPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQP 480
+L R ++ A HP T + KL+ +R K+ ++IG
Sbjct: 393 KKRLTEFARRTVYPSANYIHHPNGT--ITKLALLR--DRSKVTLNIG------------- 435
Query: 481 GKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTY 540
+V RH+ +GDVVL NRQPTLH+ S+M H VRVL T R++ + + Y
Sbjct: 436 ----------DVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLN-YSTFRLNLSCTTPY 484
Query: 541 NADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKD 600
NADFDGDEMN+H PQ +++AE ++ +V P+ P ++QD ++ + LT KD
Sbjct: 485 NADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKD 544
Query: 601 TFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQ 660
TFL++ F Q S L + LP +PAI KP PLWTGKQ
Sbjct: 545 TFLDK-YFVQ--------SVALWLDLWQ--------------LP-IPAILKPRPLWTGKQ 580
Query: 661 VITAVL---NH--ITRGRPPF 676
V + +L NH + RPPF
Sbjct: 581 VFSLILPEVNHPATPQDRPPF 601
Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 152/291 (52%), Gaps = 23/291 (7%)
Query: 752 LLIYKNDLVRGVIDKAQF--ADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTC 809
++I + L+ G I K+ A L+H + +GS+ ++ + R+ T FL GF+
Sbjct: 608 VMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSV 667
Query: 810 GVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGD 869
GV D + D R+ + L + R ++E + GA + L R G
Sbjct: 668 GVQDTVADSDTLRQMNDVL-----VKTRRNVEKI----GAAANNRTLN-------RKAGM 711
Query: 870 AAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISS 929
+ F+ + S LNK E + L N +M +G+KG+ +N QI+
Sbjct: 712 TLLQSFEADVNSALNK-----CREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNICQIAV 766
Query: 930 HLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREG 989
+GQQ + G R+P +TLP F D+ + G ++ GL+P E++FH MAGREG
Sbjct: 767 FVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREG 826
Query: 990 LVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
L+DTAVKTS +GYLQR LIK LE + +YD +VR+A+ ++QF YGEDG+D
Sbjct: 827 LIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANDELIQFMYGEDGLD 877
Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 1120 NEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLG 1179
N+ A + LK ++ K+ SL PGE +G +A+QS GEP+TQMTLNTFH AG NVTLG
Sbjct: 1059 NDRAFEYLLKEIRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLG 1118
Query: 1180 IPRLQEILTIASKDIKTPVITCPLL 1204
+PRL E+L + S++ K +T L
Sbjct: 1119 VPRLLELLNV-SRNQKHASMTVSLF 1142
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRRE 53
C+TC ++ CPGHFG+I+L PV+N +F+L+ +LK +C C + RE
Sbjct: 69 CETCHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLLNTRE 121
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1 OS=Plasmodium
falciparum (isolate CDC / Honduras) GN=RPII PE=3 SV=1
Length = 2452
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 131/425 (30%), Positives = 200/425 (47%), Gaps = 59/425 (13%)
Query: 249 DIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHP 308
+I++K+ + E + F SD + + L + +PP R + G+ E
Sbjct: 243 EILKKIRKEEMSILGFNSD--------RCVPASLILTCIPIPPPCARPYVQYGNQRSEDD 294
Query: 309 QTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD----GKNAAGQRDMA 364
T+ L +++ NI L ++ + V+ LQ + LFD G A R
Sbjct: 295 LTLKLLDIVKTNIQLKRQ-TDRGAKSHVLQDLCSLLQFHITTLFDNDIPGMPIATTRSKK 353
Query: 365 --SGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERV 422
I L+ KEG R LMGKRV+++ R+VI+ DP L ++ IG+P A+ LT+ E V
Sbjct: 354 PIKAIRTRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNIDYIGVPKSVAMTLTFCETV 413
Query: 423 TPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAIVQPGK 482
TP N L+ + G PGA + + G K D + +
Sbjct: 414 TPLNYDNLKKLVERGPYEWPGAKYIIR---------------DNGTKYD-----LRHVRR 453
Query: 483 DSDNEFE-GKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYN 541
+S+ E E G V RH+ D D +L NRQP+LHK SIM H ++L T R++ + S YN
Sbjct: 454 NSEKELEYGYKVERHMTDEDYILFNRQPSLHKMSIMGHKAKILP-YSTFRLNLSVTSPYN 512
Query: 542 ADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLTKKDT 601
ADFDGDEMN+H Q +R+E +++ Q V P P+ ++QD +++ T++D
Sbjct: 513 ADFDGDEMNLHLAQSHETRSEIKHLMIVQRQIVSPQGNKPVMGIVQDSLLAIRKFTRRDN 572
Query: 602 FLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQV 661
FL ++E LL + I V+P PAI KP LWTGKQ+
Sbjct: 573 FLTKEEVMSLL--------------------IWIPYWNH-VIP-TPAIIKPRALWTGKQI 610
Query: 662 ITAVL 666
+ +L
Sbjct: 611 FSMLL 615
Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 168/302 (55%), Gaps = 37/302 (12%)
Query: 747 LSEEKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQM 804
+++ K++I N+L+ G+I K L+H + G + LSAL ++ +L+
Sbjct: 760 INDGKVIIKNNELLSGIICKRTVGSSSGSLIHVLWHEMGPDKTKDFLSALQKVTNNWLEY 819
Query: 805 HGFTCGVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAM 864
GFT D++ S ++ +V E+ D ++ + KL +EKA
Sbjct: 820 VGFTVSCSDII--------------ASNKVLGKVR----EILDKSKSEVSKL---VEKAQ 858
Query: 865 RGG-----GDAAVAYFDMKMTSQLN--KHTSSSVINELLSEGLLKPTGKNWISLMTTSGA 917
+G G + F+ ++ ++LN + + V +E L E +N I M SG+
Sbjct: 859 KGELECQPGKSLYESFETRVNNELNCAREMAGKVASESLDE-------RNNIFSMVASGS 911
Query: 918 KGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQ 977
KGS +N QI S +GQQ +EGKR+P + ++LP F +D+ P + GF+ + +L+GL PQ
Sbjct: 912 KGSIINISQIISCVGQQNVEGKRIPFGFNHRSLPHFIKFDYGPESRGFVSNSYLSGLTPQ 971
Query: 978 EYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGED 1037
E +FH M GREG++DTA KTS +GY+QR LIK +E + + YD +VR++ G I+QF YGED
Sbjct: 972 EVFFHAMGGREGIIDTACKTSETGYIQRRLIKAMEDVMVQYDRTVRNSYGDIIQFLYGED 1031
Query: 1038 GV 1039
G+
Sbjct: 1032 GM 1033
Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 1127 FLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1186
L+ ++ F SL PGE VG LA+QS+GEP+TQMTLNTFH AG G NVTLG+PRL+E+
Sbjct: 1386 LLQEIEKIFYKSLCHPGECVGALAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKEL 1445
Query: 1187 LTIASKDIKTPVITCPL 1203
+ I K++KTP T L
Sbjct: 1446 INIV-KNVKTPSTTIYL 1461
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
C TC CPGHFGHI+L P+Y+ N++ +L+ +C+ C
Sbjct: 68 CGTCNMNVKYCPGHFGHIELAKPMYHYGFMNVVLNVLRCVCYHC 111
>sp|A5DCV3|RPB1_PICGU DNA-directed RNA polymerase II subunit RPB1 (Fragments)
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB1
PE=3 SV=2
Length = 1579
Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 172/331 (51%), Gaps = 38/331 (11%)
Query: 292 IKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVL 351
I F ++G D + T L+ V++ANI + ++ + + +++ + L Q
Sbjct: 254 IAFNDTARGEDDL-----TFKLADVIKANINVQRLELD--GSPQHVISEFEALLQFHVAT 306
Query: 352 FDGKNAAGQ--------RDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAV 403
+ + AGQ R + S I L+ KEG R LMGKRV+++ R+VIS DP L +
Sbjct: 307 YMDNDIAGQPQALQKTGRPIKS-IRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDL 365
Query: 404 NEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYL-DKLSTMRLPPNKKM 462
+++G+P A LTYPE VTP+N+ +L + + NG HPGA + + D + L NK+
Sbjct: 366 DQVGVPISIARTLTYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKR- 424
Query: 463 RISIGRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 522
D ++ G V RHL D D VL NRQP+LHK S+M H V+
Sbjct: 425 ------------------AGDIALQY-GWKVERHLMDDDPVLFNRQPSLHKMSMMCHRVK 465
Query: 523 VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPL 582
V+ T R++ + S YNADFDGDEMN+H PQ +RAE I Q V P + P+
Sbjct: 466 VMP-YSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVSPQSNKPV 524
Query: 583 RSLIQDHIVSAALLTKKDTFLNRDEFCQLLY 613
++QD + +T +D F+ D+ +LY
Sbjct: 525 MGIVQDTLCGVRKMTLRDIFIEYDQVMNMLY 555
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 99/138 (71%)
Query: 907 NWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFI 966
N + M SG+KGS +N Q+S+ +GQQ +EGKR+P + ++LP F D++P + GF+
Sbjct: 573 NNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFV 632
Query: 967 IDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDAD 1026
+ +L GL PQE++FH MAGREGL+DTAVKT+ +GY+QR L+K LE + + YD + R++
Sbjct: 633 ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 692
Query: 1027 GSIVQFCYGEDGVDVHQT 1044
G I+QF YGEDGVD Q
Sbjct: 693 GDIIQFVYGEDGVDGTQV 710
Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 66/92 (71%), Gaps = 1/92 (1%)
Query: 1112 KFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGR 1171
+ ++F N M+ + + ++ +F SL PGE VG++A+QS+GEP+TQMTLNTFH AG
Sbjct: 863 RVIEEFRLNRMSFEWAMGEIETQFQKSLVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGV 922
Query: 1172 GEMNVTLGIPRLQEILTIASKDIKTPVITCPL 1203
NVTLG+PRL+EIL +A K+IKTP +T L
Sbjct: 923 SSKNVTLGVPRLKEILNVA-KNIKTPALTVYL 953
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFC 44
C+TCG+ CPGHFGHI+L PV++ + + + +C C
Sbjct: 68 CQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCECVCMHC 111
>sp|Q58445|RPOA1_METJA DNA-directed RNA polymerase subunit A' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoA1 PE=3 SV=2
Length = 1341
Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 161/300 (53%), Gaps = 41/300 (13%)
Query: 752 LLIYKNDLVRGVIDKAQF-ADYGLV-HTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTC 809
++I +L++GVIDK + A+ GL+ HT+ + +G L + +++ + + GFT
Sbjct: 1047 VVIKDGELIKGVIDKNGYGAEAGLILHTIVKEFGPEAGRKFLDSATKMAIRAVMLRGFTT 1106
Query: 810 GVDDLLILKDKERERKNHLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGD 869
G+DD + ++ +E + L +EE K+K IEK RG
Sbjct: 1107 GIDDEDLPEEALKEIEKVLDEAEE---------------------KVKEIIEKYERG--- 1142
Query: 870 AAVAYFDMKMTSQLN-KHTSSSVINELLSEGLLKPTG--------KNWISLMTTSGAKGS 920
++++ LN + + + I+ +L E K N +M +GA+G+
Sbjct: 1143 ------ELELLPGLNLEESREAYISNVLREARDKAGAIAERYLGLDNHAVIMAVTGARGN 1196
Query: 921 KVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYY 980
+N Q+++ LGQQ + GKR+ R G+ LP F D R+ GF+ + GL P E++
Sbjct: 1197 ILNLTQMAACLGQQSVRGKRIFRGYRGRVLPHFEKGDLGARSHGFVRSSYKKGLSPTEFF 1256
Query: 981 FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVD 1040
FH M GREGLVD AV+T++SGY+QR LI L+ LK +D +VRD+ G ++QF YGEDG+D
Sbjct: 1257 FHAMGGREGLVDQAVRTAQSGYMQRRLINALQDLKTEFDGTVRDSRGIMIQFKYGEDGID 1316
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 113/320 (35%), Positives = 165/320 (51%), Gaps = 47/320 (14%)
Query: 242 LLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFR--LPSK 299
L PSDV++I+EK+ + + L ++ + + L V+ VPP+ R + +
Sbjct: 178 LTPSDVREILEKIPDEDCILLGLNPEVARPEW--------MVLTVLPVPPVTVRPSITLE 229
Query: 300 GGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFD------ 353
G+ E T L +++ N L N +I W LQ VN FD
Sbjct: 230 TGER-SEDDLTHKLVDIIRINNRLEENIEGGAPNL-IIEDLWNLLQYHVNTYFDNEAPGI 287
Query: 354 --GKNAAGQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPY 411
K+ +G R + + + Q L+ KEG FR L GKRVN++ R+VISPDP L++NE+G+P
Sbjct: 288 PPAKHRSG-RPLKT-LAQRLKGKEGRFRYNLAGKRVNFSSRTVISPDPCLSINEVGVPEV 345
Query: 412 FALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGR--K 469
A LT PE+VT +N+ ++R + NG+E HPG + + K+ IGR
Sbjct: 346 VAKELTVPEKVTKYNIERIRQLLRNGSEKHPGVNYVIRKM--------------IGRDGT 391
Query: 470 LDTSRGAIVQPGKD--SDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 527
+ I + KD ++N EG +V RHL DGD+VL NRQP+LH+ SIMAH VRVL
Sbjct: 392 EQEYKVKITESNKDFWAENIREGDIVERHLMDGDIVLYNRQPSLHRMSIMAHRVRVLP-Y 450
Query: 528 KTLRMHYANCSTYNADFDGD 547
+T R + C DGD
Sbjct: 451 RTFRHNLCVC------VDGD 464
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 61/138 (44%), Gaps = 36/138 (26%)
Query: 535 ANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAA 594
NC YNADFDGDEMN+H PQ E +RAEA ++ + P G P+ I D I A
Sbjct: 910 GNCPPYNADFDGDEMNLHVPQSEEARAEAEALMLVEKHILSPRFGGPIIGAIHDFISGAY 969
Query: 595 LLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPE- 653
LLT + +DE +L S G+ +W+P+
Sbjct: 970 LLT--SNYFTKDEATLILRSGGIKDE----------------------------LWEPDK 999
Query: 654 -----PLWTGKQVITAVL 666
PL++GK++ + L
Sbjct: 1000 VENGVPLYSGKKIFSKAL 1017
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 1 CKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKAS---RREVEKC 57
CKTCG R CPGHFGHI+L PV + +Y +LK +C C S R+E+ +
Sbjct: 62 CKTCGGRIGECPGHFGHIELAKPVIHIGFAKTIYKILKAVCPHCGRVAISETKRKEILEK 121
Query: 58 VRKLE 62
+ KLE
Sbjct: 122 MEKLE 126
>sp|P15349|RPOA1_HALMO DNA-directed RNA polymerase subunit A' (Fragment) OS=Halococcus
morrhuae GN=rpoA1 PE=3 SV=1
Length = 349
Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats.
Identities = 100/297 (33%), Positives = 149/297 (50%), Gaps = 37/297 (12%)
Query: 750 EKLLIYKNDLVRGVIDKAQFADYG--LVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGF 807
+ ++I + LV G ID+ +G +V T+ + YG A ++ ++ L + GF
Sbjct: 8 DTVMIDEGALVEGTIDEDAVGAFGGEIVDTIVKQYGETRARVFINEVASLAMRAIMHFGF 67
Query: 808 TCGVDDLLILKDKERE----RKNHLHGSEEIGKRVHLEALELEDGAEIDP---IKLKSEI 860
+ G+DD I E + N +E+ + LE G +D +K+ +
Sbjct: 68 SIGIDDESISDAAEAQIDESMDNAYERVQELIDTYENDDLESLPGRTVDETLEMKIMQTL 127
Query: 861 EKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGS 920
KA GD A +FD N +M SGA+GS
Sbjct: 128 GKARDSAGDIADEHFD----------------------------DDNPAVIMAESGARGS 159
Query: 921 KVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYY 980
+N Q+++ +GQQ + G+R+ R G+TL F P D + A GF+ D + +GL P+E++
Sbjct: 160 MLNLTQMAACVGQQAVRGERINRGYEGRTLSHFKPGDLSAEAHGFVEDSYRSGLTPREFF 219
Query: 981 FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGED 1037
FH M GREGLVDTAV+TS+SGYLQR LI L L+ YD +VRD +IVQF +GED
Sbjct: 220 FHAMGGREGLVDTAVRTSKSGYLQRRLINALSELETQYDGTVRDTSDNIVQFEFGED 276
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,500,566
Number of Sequences: 539616
Number of extensions: 21048436
Number of successful extensions: 76385
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 66251
Number of HSP's gapped (non-prelim): 7305
length of query: 1208
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1079
effective length of database: 121,958,995
effective search space: 131593755605
effective search space used: 131593755605
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)