BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046827
(208 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5Q0H2|FLA19_ARATH Fasciclin-like arabinogalactan protein 19 OS=Arabidopsis thaliana
GN=FLA19 PE=2 SV=2
Length = 248
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 83 SATFFIPSNDFRFPLD-----PF---IFPYHIVPQRLSFSDLLLLKPLSRLPTLLPKKSI 134
S T F P++ F LD PF H VP RLS S L L S LPTLLP +
Sbjct: 68 SLTLFAPTDSMLFDLDMTHSLPFYVSTLRLHSVPLRLSLSGLRSLPNSSSLPTLLPSHRL 127
Query: 135 LVTNTSASNFT--LDDSLVFYPDLYLTSTIAVHGIQNIL 171
L+T S+SN + LD + P L+ IAVHG+ ++L
Sbjct: 128 LLTKHSSSNDSIFLDGVQLLIPGLFDGQHIAVHGLADLL 166
>sp|P0DH64|Y4891_SELML FAS1 domain-containing protein SELMODRAFT_448915 OS=Selaginella
moellendorffii GN=SELMODRAFT_448915 PE=2 SV=1
Length = 260
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 20/148 (13%)
Query: 50 IIDALVGTGDFNSWENIITAADESTSAVVAFPFSATFFIPSNDFRFPLDPFI-------- 101
++ ++G G AA + S P +T IPSN+ +D +
Sbjct: 75 LVSNMIGQG-------FTVAAAVAQSLQTLIPIRSTLLIPSNNAIAGVDANLSQEDIINT 127
Query: 102 FPYHIVPQRLSFSDLLLLKPLSRLPTLLPKKSILVTNTSASNFTLDDSLVFYPDLYLTST 161
YH++ SF L + LPT+L + I VT+ S NFTL++ + +PD+ ++
Sbjct: 128 LQYHVLTFPTSFEALSRNDVGAELPTMLQGEMITVTSNSPGNFTLNEVNITHPDVCSSTR 187
Query: 162 -IAVHGIQNILDYS----VYGGSTPSPP 184
IA HGI +L Y+ G SPP
Sbjct: 188 FIACHGIDRVLAYNSSLVTAAGPEASPP 215
>sp|Q9FL53|FLA21_ARATH Fasciclin-like arabinogalactan protein 21 OS=Arabidopsis thaliana
GN=FLA21 PE=2 SV=1
Length = 353
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 99 PFIFP---YHIVPQRLSFSDLLLLKPLSRLPTLLPKKSILVT----NTSASNFTLDDSLV 151
PF++ +HI+ QRL++ D + + + TL P + + +T N+S +F + +
Sbjct: 269 PFLYEVVRHHILVQRLTYKDFASMSDKATVKTLDPYQDLTITRRNVNSSGGDFMISGVEI 328
Query: 152 FYPDLYLTSTIAVHGIQNILD 172
PD++ +S +HGI + L+
Sbjct: 329 VDPDMFSSSNFVIHGISHTLE 349
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 101 IFPYHIVPQRLSFSDLLLLKPLSRLPTLLPKKSILVT--NTSASNFTLDDSLVFYPDLYL 158
+ YH +P LS DLL + LPTLL KS+ ++ N + ++ + +PD++L
Sbjct: 106 LLHYHTLPLMLSMDDLLKKPQGTCLPTLLHHKSVQISTVNQESRTAEVNHVRITHPDMFL 165
Query: 159 TSTIAVHGI 167
++ +HG+
Sbjct: 166 GDSLVIHGV 174
>sp|Q9FGW0|FLA20_ARATH Putative fasciclin-like arabinogalactan protein 20 OS=Arabidopsis
thaliana GN=FLA20 PE=3 SV=1
Length = 424
Score = 37.4 bits (85), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 101 IFPYHIVPQRLSFSDLL-LLKPLSRLPTLLPKKSILVTNTSASNFTLDDSLVFYPDLYLT 159
IF H+V Q L + DL K S L T+L I ++ S L+ + YPDLY+
Sbjct: 314 IFRGHVVSQLLLWKDLQKFAKEGSILQTVLKGYEIEIS-LSGDILLLNGVPLIYPDLYVN 372
Query: 160 STIAVHGIQNIL 171
IAVHG ++
Sbjct: 373 DWIAVHGFNQMI 384
>sp|Q6FQT7|ATG9_CANGA Autophagy-related protein 9 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ATG9 PE=3
SV=1
Length = 928
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 4/109 (3%)
Query: 98 DPFIFPYHIVPQRLSFSDLLLLKPLSRLPTLLPKKSILVTNTSASNFTLDDSLVFYPDLY 157
D + YH + F +L L R+ LL + + L+T F+L +S D +
Sbjct: 670 DSWKDRYHTEGVKQEFCELYNL----RITVLLRELASLITTPFILWFSLPNSAGKMVDFF 725
Query: 158 LTSTIAVHGIQNILDYSVYGGSTPSPPSLFPPPPPPPHSRDSFVEEAEV 206
S++ V G+ + Y+VY G + F +D+ EE ++
Sbjct: 726 RESSVYVDGLGYVCKYAVYDGDADAVKKHFGTDGNETTEQDAATEEQDI 774
>sp|B6QAV0|MDM12_PENMQ Mitochondrial distribution and morphology protein 12 OS=Penicillium
marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333)
GN=mdm12 PE=3 SV=1
Length = 489
Score = 30.4 bits (67), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 140 SASNFTLDDSLVFYPDLYLTSTIAVHGIQNILDYSVYGGSTPSPPSLF---PPPPPPPHS 196
S+SN T +D V Y D ++T HG+ G +P S+ PP P PH
Sbjct: 258 SSSNNTSNDPTVIYNDHASSTTATAHGLHE-------GREKQAPTSIIDQESPPSPTPHM 310
Query: 197 RDSFVEEAEV 206
R+ E+ +V
Sbjct: 311 RERRPEDFQV 320
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,869,302
Number of Sequences: 539616
Number of extensions: 3818586
Number of successful extensions: 34004
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 30745
Number of HSP's gapped (non-prelim): 2809
length of query: 208
length of database: 191,569,459
effective HSP length: 112
effective length of query: 96
effective length of database: 131,132,467
effective search space: 12588716832
effective search space used: 12588716832
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)