Query 046827
Match_columns 208
No_of_seqs 137 out of 373
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 04:51:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2335 Secreted and surface p 99.9 2.2E-25 4.7E-30 187.8 8.6 124 41-172 41-180 (187)
2 PF02469 Fasciclin: Fasciclin 99.8 1E-20 2.2E-25 145.6 3.1 110 58-172 1-127 (128)
3 smart00554 FAS1 Four repeated 99.8 4.2E-20 9.2E-25 137.3 4.4 83 85-172 1-97 (99)
4 KOG1437 Fasciclin and related 98.6 4.8E-08 1E-12 96.3 6.7 120 48-173 508-641 (682)
5 KOG1437 Fasciclin and related 98.6 1.1E-07 2.3E-12 93.9 7.2 120 47-173 373-507 (682)
6 KOG2675 Adenylate cyclase-asso 31.6 36 0.00079 33.0 2.4 6 89-94 154-159 (480)
7 KOG1705 Uncharacterized conser 21.5 27 0.0006 27.1 -0.3 8 1-8 1-8 (110)
8 PF13132 DUF3950: Domain of un 21.3 90 0.002 19.3 2.0 11 55-65 12-22 (30)
9 cd08326 CARD_CASP9 Caspase act 19.5 1.2E+02 0.0027 22.3 2.9 29 43-71 45-75 (84)
10 COG3603 Uncharacterized conser 19.0 2.2E+02 0.0047 23.2 4.3 73 102-177 5-78 (128)
No 1
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=2.2e-25 Score=187.84 Aligned_cols=124 Identities=18% Similarity=0.243 Sum_probs=110.0
Q ss_pred chhhhhhhhHHHHHhcCCChHHHHHHHHHhcccccccccCCCCeEEEecCCcCCCCCC----------------cccccc
Q 046827 41 QQDDRQLNNIIDALVGTGDFNSWENIITAADESTSAVVAFPFSATFFIPSNDFRFPLD----------------PFIFPY 104 (208)
Q Consensus 41 ~~~~~~~~~Ii~~L~~ag~F~tlv~~L~~a~~~~~~~L~~~~~~TIFAPtD~Af~~l~----------------~~lL~y 104 (208)
+.+...+.+|++.....++|++|+.+++++++.. +|++.|+||||||+|+||++++ .++|.|
T Consensus 41 ~~~~~~~~~iV~~a~~~~~f~tl~~a~~aa~Lv~--~L~~~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtY 118 (187)
T COG2335 41 AAVKGNRADIVESAANNPSFTTLVAALKAAGLVD--TLNETGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTY 118 (187)
T ss_pred chhccchhHHHHHHccCcchHHHHHHHHhhhhHH--HhcCCCCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEE
Confidence 3456678999999999999999999999999886 6889999999999999999973 389999
Q ss_pred cccCCccChhhhcccCCCCccccccCCceEEEEEcCCCceEEccEEeeCCceeecCCeEEEEeCCccC
Q 046827 105 HIVPQRLSFSDLLLLKPLSRLPTLLPKKSILVTNTSASNFTLDDSLVFYPDLYLTSTIAVHGIQNILD 172 (208)
Q Consensus 105 HVVPg~ls~~dL~~l~~gs~l~T~l~g~~L~VT~~~~~~~~Vn~a~Vv~pDI~~~ngivIHgID~VL~ 172 (208)
|||+|+++.+|+.+... + ++++|..+.|...+ ++++||+++|+.+||.++|| +||.||+||.
T Consensus 119 HVv~Gk~~~~~l~~~~~---v-~t~~G~~~~i~~~~-~~~~Vn~a~v~~~di~a~Ng-vIhvID~Vl~ 180 (187)
T COG2335 119 HVVEGKITAADLKSSGS---V-KTVQGADLKIKVTG-GGVYVNDATVTIADINASNG-VIHVIDKVLI 180 (187)
T ss_pred EEEcCcccHHHhhcccc---c-eeecCceEEEEEcC-CcEEEeeeEEEeccEeccCc-EEEEEeeecc
Confidence 99999999999987433 4 34799999998876 56999999999999999999 6999999996
No 2
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.81 E-value=1e-20 Score=145.60 Aligned_cols=110 Identities=23% Similarity=0.331 Sum_probs=89.0
Q ss_pred CChHHHHHHHHHhcccccccc-cCCCCeEEEecCCcCCCCCC--------------cccccccccCCccChhhhcccCCC
Q 046827 58 GDFNSWENIITAADESTSAVV-AFPFSATFFIPSNDFRFPLD--------------PFIFPYHIVPQRLSFSDLLLLKPL 122 (208)
Q Consensus 58 g~F~tlv~~L~~a~~~~~~~L-~~~~~~TIFAPtD~Af~~l~--------------~~lL~yHVVPg~ls~~dL~~l~~g 122 (208)
.+|++|.++|+.+++.. .| ...+++|||||+|+||+++. .++|+|||++|+++.++|... .
T Consensus 1 ~~~s~f~~~l~~~~l~~--~l~~~~~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~~--~ 76 (128)
T PF02469_consen 1 PDLSTFSRLLEQAGLAD--LLNDSDGNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLRNG--K 76 (128)
T ss_dssp -TTHHHHHHHHHTTCHH--HHGCSSSSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHHCH--H
T ss_pred CCHHHHHHHHHHcCCHH--HHhcCCCCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhccc--c
Confidence 37899999999998765 46 67799999999999997651 489999999999999998764 1
Q ss_pred CccccccCCceEEEEEc-CCCceEEcc-EEeeCCceeecCCeEEEEeCCccC
Q 046827 123 SRLPTLLPKKSILVTNT-SASNFTLDD-SLVFYPDLYLTSTIAVHGIQNILD 172 (208)
Q Consensus 123 s~l~T~l~g~~L~VT~~-~~~~~~Vn~-a~Vv~pDI~~~ngivIHgID~VL~ 172 (208)
..+.|++.|..+.|+.. +.+.++||+ ++|+..|+.++|| +||.||+||.
T Consensus 77 ~~~~t~~~g~~~~v~~~~~~~~~~v~~~a~i~~~~~~~~nG-~ih~id~vL~ 127 (128)
T PF02469_consen 77 QTLETLLNGQPLRVSSSPSNGTIYVNGKARIVKSDIEASNG-VIHIIDDVLI 127 (128)
T ss_dssp EEEEBSSTTCEEEEEEEGGTTEEEECCEEEESEEEEEESSE-EEEEESS-TS
T ss_pred ccceeccCCCEEEEEEEecCCceEecCceEEEeCCEEeCCE-EEEEECceEC
Confidence 35777789999999876 447899999 9999999999999 5999999986
No 3
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.79 E-value=4.2e-20 Score=137.34 Aligned_cols=83 Identities=33% Similarity=0.450 Sum_probs=72.5
Q ss_pred EEEecCCcCCCCCC-------------cccccccccCCccChhhhcccCCCCccccccCCceEEEEEcCC-CceEEccEE
Q 046827 85 TFFIPSNDFRFPLD-------------PFIFPYHIVPQRLSFSDLLLLKPLSRLPTLLPKKSILVTNTSA-SNFTLDDSL 150 (208)
Q Consensus 85 TIFAPtD~Af~~l~-------------~~lL~yHVVPg~ls~~dL~~l~~gs~l~T~l~g~~L~VT~~~~-~~~~Vn~a~ 150 (208)
|||||+|+||+++. .++|+|||+|++++.++|.. +..++| +.|..|.|+..+. +.+++|+++
T Consensus 1 TvfaP~d~Af~~~~~~~~~~l~~~~~l~~ll~~Hiv~~~~~~~~l~~---~~~~~T-l~g~~l~v~~~~~~~~i~in~~~ 76 (99)
T smart00554 1 TVFAPTDEAFQKLPPGTLNSLLADPKLKNLLLYHVVPGRLSSADLLN---GGTLPT-LAGSKLRVTRSGDSGTVTVNGAR 76 (99)
T ss_pred CEeCcCHHHHHhcCHHHHHHHhCCHHHHHHHHhcEeCceEcHHHhcc---CCcccc-CCCCEEEEEEeCCCCeEEEcceE
Confidence 89999999999862 38999999999999999975 456766 4688999988764 679999999
Q ss_pred eeCCceeecCCeEEEEeCCccC
Q 046827 151 VFYPDLYLTSTIAVHGIQNILD 172 (208)
Q Consensus 151 Vv~pDI~~~ngivIHgID~VL~ 172 (208)
|+.+|+.++|| +||+||+||.
T Consensus 77 v~~~di~~~nG-vih~Id~vL~ 97 (99)
T smart00554 77 IVEADIAATNG-VVHVIDRVLL 97 (99)
T ss_pred EEECCEecCCe-EEEEECceeC
Confidence 99999999999 6999999985
No 4
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.64 E-value=4.8e-08 Score=96.32 Aligned_cols=120 Identities=15% Similarity=0.110 Sum_probs=87.9
Q ss_pred hhHHHHHhcCCChHHHHHHHHHhcccccccccCCCCeEEEecCCcCCCCCC------------cccccccccCCccChhh
Q 046827 48 NNIIDALVGTGDFNSWENIITAADESTSAVVAFPFSATFFIPSNDFRFPLD------------PFIFPYHIVPQRLSFSD 115 (208)
Q Consensus 48 ~~Ii~~L~~ag~F~tlv~~L~~a~~~~~~~L~~~~~~TIFAPtD~Af~~l~------------~~lL~yHVVPg~ls~~d 115 (208)
.++.+.|++.+.++.+.++++.++..+ ++..++++|+|+|+|+||.+.. ..++.||++++.+. =+
T Consensus 508 ~~l~~~l~~d~r~s~~~~~le~~~l~e--~l~~~~~~t~fvPt~ka~~~~~~~~~~~~~~~~l~~~l~yH~v~~~~~-ls 584 (682)
T KOG1437|consen 508 VSLMEDLKTDGRISGTVQGLEGVLLPE--ELTPEGNYTLFVPTNKAWQKSTKDEKSLFHKKALQDFLKYHLVPGQSR-LS 584 (682)
T ss_pred ccHHHHHhhccchhhhHHhhhhcCChh--hhccCCceEEEeecccccccCCcchhhcchHHHHHHHHHhccccceee-ee
Confidence 567788999999999999999998876 4567799999999999998641 27899999999875 11
Q ss_pred hcccCCCCc--cccccCCceEEEEEcCCCceEEccEEeeCCceeecCCeEEEEeCCccCC
Q 046827 116 LLLLKPLSR--LPTLLPKKSILVTNTSASNFTLDDSLVFYPDLYLTSTIAVHGIQNILDY 173 (208)
Q Consensus 116 L~~l~~gs~--l~T~l~g~~L~VT~~~~~~~~Vn~a~Vv~pDI~~~ngivIHgID~VL~~ 173 (208)
+...+- .. +.-.+.|..+.+..-. ....+|-.+++..||+..|| ++|.||.|+.+
T Consensus 585 ~~~~~~-v~~~~k~s~~~~~~~~~~~~-~~~~vn~e~~~~~~i~~~n~-~~h~i~~vl~p 641 (682)
T KOG1437|consen 585 LGSSPY-VMIQVKLSLRGDHLFFSLVN-PRGDVNKERLVGIDIMGTNG-VVHVIDLVLKP 641 (682)
T ss_pred cccccc-eeeeeeEEEecccEEeeeec-cccceeeeeeeccceeeecc-eeEEEEEEccc
Confidence 111110 00 1222344444444333 34678999999999999999 69999999964
No 5
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.58 E-value=1.1e-07 Score=93.91 Aligned_cols=120 Identities=22% Similarity=0.299 Sum_probs=88.2
Q ss_pred hhhHHHHHhcCCChHHHHHHHHHhcccccccccCCCCeEEEecCCcCCCCCC--------cccccccccCCccChhhhcc
Q 046827 47 LNNIIDALVGTGDFNSWENIITAADESTSAVVAFPFSATFFIPSNDFRFPLD--------PFIFPYHIVPQRLSFSDLLL 118 (208)
Q Consensus 47 ~~~Ii~~L~~ag~F~tlv~~L~~a~~~~~~~L~~~~~~TIFAPtD~Af~~l~--------~~lL~yHVVPg~ls~~dL~~ 118 (208)
.+++.+.+++. +=+++++++...++.. .|..++..|+|+|+|++|.++. ..+|.||++|-++..+++..
T Consensus 373 ~~~l~~La~e~-~~st~~rlv~elgll~--~L~~n~e~t~~lp~n~~fd~~~~~~~r~l~~qIL~~HII~~~~~~~~~y~ 449 (682)
T KOG1437|consen 373 LKNLMSLARED-EISTSMRLVAELGLLT--ALAPNDEATLLLPTNNLFDDLTPLESRRLAEQILYNHIIPEYLTSSSMYN 449 (682)
T ss_pred HHHHHHHHhcc-cccHHHHHHHhccceE--EEcCCCceEEeeehhhhccCCChhhhHHHHHHHHHHhCcchhhhhhhhhc
Confidence 46677777754 5588899999988875 3655566999999999999874 37999999999999998765
Q ss_pred cCCCCccccccCCceEEEE--EcC----CCceEEcc-EEeeCCceeecCCeEEEEeCCccCC
Q 046827 119 LKPLSRLPTLLPKKSILVT--NTS----ASNFTLDD-SLVFYPDLYLTSTIAVHGIQNILDY 173 (208)
Q Consensus 119 l~~gs~l~T~l~g~~L~VT--~~~----~~~~~Vn~-a~Vv~pDI~~~ngivIHgID~VL~~ 173 (208)
.. +.++| +.|..+.+- ... ...+.++| +.|+..|+...|| +||.||+||.+
T Consensus 450 ~~--~~v~t-~g~~~l~~fv~r~~~s~~~t~i~~~~~~~Ii~aDi~~~nG-vvH~id~vl~p 507 (682)
T KOG1437|consen 450 GQ--TTVRT-LGKNKLLYFVYRHSVSANVTDILIGNEACIIEADISVKNG-VVHIIDRVLDP 507 (682)
T ss_pred cc--ceeec-cCCeEEEEEEecccccccceeeeccceeeEEecccceecC-ceEEeeEEcCc
Confidence 32 24555 455544331 111 12345555 4799999999999 69999999976
No 6
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=31.57 E-value=36 Score=33.04 Aligned_cols=6 Identities=17% Similarity=0.130 Sum_probs=2.3
Q ss_pred cCCcCC
Q 046827 89 PSNDFR 94 (208)
Q Consensus 89 PtD~Af 94 (208)
|+-..|
T Consensus 154 ~tP~p~ 159 (480)
T KOG2675|consen 154 PTPAPY 159 (480)
T ss_pred CCCchH
Confidence 443333
No 7
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=21.49 E-value=27 Score=27.08 Aligned_cols=8 Identities=75% Similarity=1.402 Sum_probs=3.3
Q ss_pred CCCCCCch
Q 046827 1 MAKHHPNF 8 (208)
Q Consensus 1 ~~~~~~~~ 8 (208)
|+||||-+
T Consensus 1 MskHhpDL 8 (110)
T KOG1705|consen 1 MAKHHPDL 8 (110)
T ss_pred CCCcCCcE
Confidence 34444443
No 8
>PF13132 DUF3950: Domain of unknown function (DUF3950)
Probab=21.29 E-value=90 Score=19.28 Aligned_cols=11 Identities=36% Similarity=1.123 Sum_probs=9.2
Q ss_pred hcCCChHHHHH
Q 046827 55 VGTGDFNSWEN 65 (208)
Q Consensus 55 ~~ag~F~tlv~ 65 (208)
.+.|+|+.|+.
T Consensus 12 ~~~~NFSaWV~ 22 (30)
T PF13132_consen 12 EGSGNFSAWVK 22 (30)
T ss_pred ccCcChHHHHH
Confidence 55789999987
No 9
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=19.53 E-value=1.2e+02 Score=22.32 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHhcCCC--hHHHHHHHHHhc
Q 046827 43 DDRQLNNIIDALVGTGD--FNSWENIITAAD 71 (208)
Q Consensus 43 ~~~~~~~Ii~~L~~ag~--F~tlv~~L~~a~ 71 (208)
+.++...++++|...|. |..|..+|+.++
T Consensus 45 r~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 45 RRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
No 10
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=19.05 E-value=2.2e+02 Score=23.15 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=0.0
Q ss_pred ccccccCCccChhhhcccCCCCccccccCC-ceEEEEEcCCCceEEccEEeeCCceeecCCeEEEEeCCccCCcCCC
Q 046827 102 FPYHIVPQRLSFSDLLLLKPLSRLPTLLPK-KSILVTNTSASNFTLDDSLVFYPDLYLTSTIAVHGIQNILDYSVYG 177 (208)
Q Consensus 102 L~yHVVPg~ls~~dL~~l~~gs~l~T~l~g-~~L~VT~~~~~~~~Vn~a~Vv~pDI~~~ngivIHgID~VL~~~~~g 177 (208)
|+.-+++|+|-..-|.. |+-+|+.+.| ..++||.+...-..|.-+.-+-.++..+.|-.|--++++|++..-|
T Consensus 5 l~l~~l~g~y~I~Rl~~---~~~ip~wa~~~~F~sIt~t~eelsivc~~~~vp~~V~~~~GW~~lk~~gpf~FgltG 78 (128)
T COG3603 5 LKLSILNGEYAICRLDA---GSAIPAWADGPGFWSITRTPEELSIVCLADRVPDVVQIEKGWSCLKFEGPFDFGLTG 78 (128)
T ss_pred eeEEEeCceEEEEEccc---CCcCccccCCCceEEEEcCCceEEEEeecccCCcceEecCCeEEEEEeccccCCcch
Done!