Query 046827
Match_columns 208
No_of_seqs 137 out of 373
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 08:00:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vxp_A Transforming growth fac 99.9 1.7E-27 5.9E-32 186.9 4.8 117 47-171 1-131 (132)
2 1w7d_A Fasciclin-like protein; 99.9 3.2E-27 1.1E-31 186.5 1.8 116 48-172 3-134 (137)
3 1nyo_A Immunogenic protein MPT 99.9 2E-25 6.9E-30 181.8 4.0 116 46-172 26-160 (163)
4 1o70_A Fasciclin I, FAS I, FCN 99.8 1.9E-20 6.6E-25 165.2 2.7 121 48-172 6-155 (324)
5 1o70_A Fasciclin I, FAS I, FCN 99.8 3.1E-20 1.1E-24 163.9 0.7 121 48-173 159-309 (324)
6 2kxc_B ESPF-like protein; IRTK 23.7 37 0.0013 22.1 1.7 15 182-196 28-42 (48)
7 2e0g_A Chromosomal replication 17.7 14 0.00048 26.7 -1.5 39 46-92 4-45 (107)
8 2p1h_A APAF-1, apoptotic prote 16.3 1E+02 0.0036 21.3 2.9 29 44-72 52-82 (94)
9 1jvr_A HTLV-II MA, MA, human T 15.3 83 0.0028 24.4 2.2 14 192-205 120-133 (137)
10 2wp0_C Chromosomal replication 14.0 21 0.0007 26.1 -1.5 41 46-92 7-53 (112)
No 1
>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A
Probab=99.94 E-value=1.7e-27 Score=186.93 Aligned_cols=117 Identities=26% Similarity=0.319 Sum_probs=102.5
Q ss_pred hhhHHHHHhcCCChHHHHHHHHHhcccccccccCCCCeEEEecCCcCCCCCC--------------cccccccccCCccC
Q 046827 47 LNNIIDALVGTGDFNSWENIITAADESTSAVVAFPFSATFFIPSNDFRFPLD--------------PFIFPYHIVPQRLS 112 (208)
Q Consensus 47 ~~~Ii~~L~~ag~F~tlv~~L~~a~~~~~~~L~~~~~~TIFAPtD~Af~~l~--------------~~lL~yHVVPg~ls 112 (208)
|.+|++.|++.++|++|+++++++++.+ .|++.+++|||||+|+||+++. .++|+|||+|+++.
T Consensus 1 ~~ti~~~l~~~~~fs~~~~~l~~agl~~--~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~~~ 78 (132)
T 2vxp_A 1 MGTVMDVLKGDNRFSMLVAAIQSAGLTE--TLNREGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEILV 78 (132)
T ss_dssp CCCHHHHHTTSTTCHHHHHHHHHHTCHH--HHHSSCCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSCCC
T ss_pred CccHHHHHHcCCCHHHHHHHHHHcCcHH--HHcCCCCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCceee
Confidence 5689999999999999999999999875 5778899999999999998863 27899999999998
Q ss_pred hhhhcccCCCCccccccCCceEEEEEcCCCceEEccEEeeCCceeecCCeEEEEeCCcc
Q 046827 113 FSDLLLLKPLSRLPTLLPKKSILVTNTSASNFTLDDSLVFYPDLYLTSTIAVHGIQNIL 171 (208)
Q Consensus 113 ~~dL~~l~~gs~l~T~l~g~~L~VT~~~~~~~~Vn~a~Vv~pDI~~~ngivIHgID~VL 171 (208)
.++|.. +..++| +.|+.|.|+.++ +.++|||++|+.+||.++|| |||+||+||
T Consensus 79 ~~~l~~---~~~~~t-l~G~~l~v~~~~-~~v~vn~a~v~~~di~a~NG-vIHvID~VL 131 (132)
T 2vxp_A 79 SGGIGA---LVRLKS-LQGDKLEVSLKN-NVVSVNKEPVAEPDIMATNG-VVHVITNVL 131 (132)
T ss_dssp STTCSS---CEEEEB-TTSSEEEEEEET-TEEEESSCBEEEEEEEETTE-EEEEESSCC
T ss_pred hhhccC---CceEec-CCCCEEEEEEeC-CEEEEeccEEEEcceecCCE-EEEEECcEe
Confidence 888753 445655 688899998876 67999999999999999999 699999998
No 2
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=99.93 E-value=3.2e-27 Score=186.46 Aligned_cols=116 Identities=22% Similarity=0.267 Sum_probs=102.3
Q ss_pred hhHHHHHhcCCChHHHHHHHHHhcccccccccCCCCeEEEecCCcCCCCCC----------------cccccccccCCcc
Q 046827 48 NNIIDALVGTGDFNSWENIITAADESTSAVVAFPFSATFFIPSNDFRFPLD----------------PFIFPYHIVPQRL 111 (208)
Q Consensus 48 ~~Ii~~L~~ag~F~tlv~~L~~a~~~~~~~L~~~~~~TIFAPtD~Af~~l~----------------~~lL~yHVVPg~l 111 (208)
++|+++|++.++|++|+++|+.+++.. .|++.+++|||||+|+||+++. .++|+||||||++
T Consensus 3 ~~i~~~l~~~~~~s~f~~~l~~agl~~--~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv~~~~ 80 (137)
T 1w7d_A 3 GDIVETATGAGSFTTLLTAAEAAGLVD--TLKGDGPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVVPGEV 80 (137)
T ss_dssp STTGGGGGSCSSSTTTTHHHHHTTTHH--HHTSSSCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEEESCC
T ss_pred CCHHHHHHhCCCHHHHHHHHHHcCCHH--HHcCCCCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEeCcEE
Confidence 578999999999999999999999875 5778899999999999999862 2689999999999
Q ss_pred ChhhhcccCCCCccccccCCceEEEEEcCCCceEEccEEeeCCceeecCCeEEEEeCCccC
Q 046827 112 SFSDLLLLKPLSRLPTLLPKKSILVTNTSASNFTLDDSLVFYPDLYLTSTIAVHGIQNILD 172 (208)
Q Consensus 112 s~~dL~~l~~gs~l~T~l~g~~L~VT~~~~~~~~Vn~a~Vv~pDI~~~ngivIHgID~VL~ 172 (208)
..+||.. +..+.| +.|+.|.|+..+ + ++|||++|+.+||.++|| |||+||+||.
T Consensus 81 ~~~~l~~---~~~~~t-l~G~~l~v~~~~-g-v~vn~a~v~~~di~~~NG-vIHvID~VL~ 134 (137)
T 1w7d_A 81 MSSDLTE---GMTAET-VEGGALTVTLEG-G-PKVNGVSISQPDVDASNG-VIHVIDGVLM 134 (137)
T ss_dssp CTTTSCS---SEEEEC-TTSCEEEEECTT-S-CEETTEECSBCCCBCSSS-EEEBCSSCCS
T ss_pred cHHHhcC---CCeeec-cCCceEEEEecC-C-EEEeCcEEEECCeecCCe-EEEEECeeeC
Confidence 9999865 445655 688999999875 5 999999999999999999 5999999996
No 3
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1
Probab=99.91 E-value=2e-25 Score=181.81 Aligned_cols=116 Identities=17% Similarity=0.194 Sum_probs=102.2
Q ss_pred hhhhHHHHHhcCCChHHHHHHHH-----HhcccccccccCCCCeEEEecCCcCCCCCC--------------cccccccc
Q 046827 46 QLNNIIDALVGTGDFNSWENIIT-----AADESTSAVVAFPFSATFFIPSNDFRFPLD--------------PFIFPYHI 106 (208)
Q Consensus 46 ~~~~Ii~~L~~ag~F~tlv~~L~-----~a~~~~~~~L~~~~~~TIFAPtD~Af~~l~--------------~~lL~yHV 106 (208)
...+|+++|.+.++|++|+++|+ .+++.+ .|++.+ +|||||+|+||+++. .++|+|||
T Consensus 26 ~~~~i~~~l~~~~~~s~f~~~l~~~~~~~agl~~--~L~~~g-~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~yHv 102 (163)
T 1nyo_A 26 SQDPVAVAASNNPELTTLTAALSGQLNPQVNLVD--TLNSGQ-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHV 102 (163)
T ss_dssp HHSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHH--HHTSSS-EEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHHTE
T ss_pred CCcCHHHHHHhCCCHHHHHHHHHhccccccCHHH--HhCCCC-cEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHHhce
Confidence 56899999999999999999999 888765 577777 999999999998762 26999999
Q ss_pred cCCccChhhhcccCCCCccccccCCceEEEEEcCCCceEEccEEeeCCceeecCCeEEEEeCCccC
Q 046827 107 VPQRLSFSDLLLLKPLSRLPTLLPKKSILVTNTSASNFTLDDSLVFYPDLYLTSTIAVHGIQNILD 172 (208)
Q Consensus 107 VPg~ls~~dL~~l~~gs~l~T~l~g~~L~VT~~~~~~~~Vn~a~Vv~pDI~~~ngivIHgID~VL~ 172 (208)
|||+++.+||. | .++| +.|+.|.|+..+ +.++||+++|+.+||.++|| |||+||+||.
T Consensus 103 v~g~~~~~~l~----g-~~~T-l~G~~l~v~~~~-~~v~vn~a~V~~~di~a~NG-vIHvID~VL~ 160 (163)
T 1nyo_A 103 VAGQTSPANVV----G-TRQT-LQGASVTVTGQG-NSLKVGNADVVCGGVSTANA-TVYMIDSVLM 160 (163)
T ss_dssp EESCCCTTTSC----E-EEEC-TTSSEEEEEECS-SCEEETTEECSSBCCCCSSE-EEBCBSSCCC
T ss_pred ECCEEcHHHhC----C-cccc-CCCCEEEEEEEC-CEEEEeccEEEECceEcCCE-EEEEECcEeC
Confidence 99999999986 3 5666 578999999876 67999999999999999999 6999999996
No 4
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=99.79 E-value=1.9e-20 Score=165.22 Aligned_cols=121 Identities=19% Similarity=0.264 Sum_probs=90.0
Q ss_pred hhHHHHHh------cCCChHHHHHHHHHhc--ccccccccCCCCeEEEecCCcCCCCC-------C----cccccccccC
Q 046827 48 NNIIDALV------GTGDFNSWENIITAAD--ESTSAVVAFPFSATFFIPSNDFRFPL-------D----PFIFPYHIVP 108 (208)
Q Consensus 48 ~~Ii~~L~------~ag~F~tlv~~L~~a~--~~~~~~L~~~~~~TIFAPtD~Af~~l-------~----~~lL~yHVVP 108 (208)
.+|.+.|. +.++|++|+++|+.++ +.+ .|++.+++|||||+|+||.++ + .++|+||||+
T Consensus 6 ~~i~~~L~~~~~~~~~~~~s~~~~~l~~ag~~l~~--~L~~~~~~TvFAPtn~Af~~~~~~~l~~~~~~l~~iL~yHvv~ 83 (324)
T 1o70_A 6 TTVTQFLQSFKENAENGALRKFYEVIMDNGGAVLD--DINSLTEVTILAPSNEAWNSSNINNVLRDRNKMRQILNMHIIK 83 (324)
T ss_dssp -------------CCHHHHHHHHHHHHHTCSHHHH--HHHTCSSEEEEEECHHHHHHTCTHHHHTCHHHHHHHHHHTEES
T ss_pred hhHHHHHHHHHhhhcCCcHHHHHHHHHHHhHHHHH--HHcCCCCeEEEEEChHhhhcccHhhhhCCHHHHHHHHHhcEeC
Confidence 44555555 7899999999999998 554 577889999999999999754 2 3899999999
Q ss_pred CccChhhhcccCCC-C-ccccccCCce-EEEEEcC---CCceEEcc----EEeeCCceeecCCeEEEEeCCccC
Q 046827 109 QRLSFSDLLLLKPL-S-RLPTLLPKKS-ILVTNTS---ASNFTLDD----SLVFYPDLYLTSTIAVHGIQNILD 172 (208)
Q Consensus 109 g~ls~~dL~~l~~g-s-~l~T~l~g~~-L~VT~~~---~~~~~Vn~----a~Vv~pDI~~~ngivIHgID~VL~ 172 (208)
|+++.++|.....+ . .++|+ .|.. +.++..+ ...+++|| ++|+.+|+.++|| +||+||+||.
T Consensus 84 g~~~~~~l~~~~~~~~~~~~Tl-~g~~~l~~~v~~~~~~~~v~v~~g~~~a~v~~~di~~~NG-vIhvID~VL~ 155 (324)
T 1o70_A 84 DRLNVDKIRQKNANLIAQVPTV-NNNTFLYFNVRGEGSDTVITVEGGGVNATVIQADVAQTNG-YVHIIDHVLG 155 (324)
T ss_dssp SCCCHHHHHHHTSSSCCCEEBS-STTCEEEEEEESCGGGCEEEEEETTEEEEEEEEEEECSSE-EEEEESSCTT
T ss_pred CeecHHHHhhccCCCceEEEcC-CCCceEEEEEeecCCceEEEEcCCceeEEEEeccccccCc-EEEEEchhhh
Confidence 99999999876421 1 46665 4543 4444322 23588885 9999999999999 6999999996
No 5
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=99.77 E-value=3.1e-20 Score=163.86 Aligned_cols=121 Identities=18% Similarity=0.195 Sum_probs=96.9
Q ss_pred hhHHHHHhcCCChHHHHHHHHHhccccccccc-CCCCeEEEecCCcCCCCC--------------C-----ccccccccc
Q 046827 48 NNIIDALVGTGDFNSWENIITAADESTSAVVA-FPFSATFFIPSNDFRFPL--------------D-----PFIFPYHIV 107 (208)
Q Consensus 48 ~~Ii~~L~~ag~F~tlv~~L~~a~~~~~~~L~-~~~~~TIFAPtD~Af~~l--------------~-----~~lL~yHVV 107 (208)
.++.+.+++.+.|++|..+++.+++.. +|+ ..+++|||||+|+||+++ + .++|+||||
T Consensus 159 ~ti~~~l~~~~~fs~~~~~l~~~gl~~--~L~~~~~~~TvFAPtd~Af~~l~~~~~~~~~~~l~~~~~~~l~~iL~yHvv 236 (324)
T 1o70_A 159 TTVLGKLESDPMMSDTYKMGKFSHFND--QLNNTQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILERHLA 236 (324)
T ss_dssp SCHHHHHHHCGGGHHHHHHTTTTTTTG--GGGCSSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGHHHHHHHHHTTEE
T ss_pred hhHHHHhhcCchHHHHHHHHHhhCHHH--HhCCCCCCeEEEEeChHHHHhhhhhchhHHHHHhccCcHHHHHHHHHhcEe
Confidence 468899999999999999999988764 465 578999999999999864 0 278999999
Q ss_pred CC--ccChhhhcccCC--CC-ccccccCCceEEEEEc-CCCceEEc----cEEeeCCceeecCCeEEEEeCCccCC
Q 046827 108 PQ--RLSFSDLLLLKP--LS-RLPTLLPKKSILVTNT-SASNFTLD----DSLVFYPDLYLTSTIAVHGIQNILDY 173 (208)
Q Consensus 108 Pg--~ls~~dL~~l~~--gs-~l~T~l~g~~L~VT~~-~~~~~~Vn----~a~Vv~pDI~~~ngivIHgID~VL~~ 173 (208)
|+ .|+.++|..... +. .++|+ . ..|.|+.. .++.++|| +++|+.+||.++|| |||+||+||.+
T Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~Tl-~-~~l~v~~~~~~~~v~v~~~~~~a~v~~~di~~~NG-vIHvID~VL~P 309 (324)
T 1o70_A 237 ISDKEYTMKDLVKFSQESGSVILPTF-R-DSLSIRVEEEAGRYVIIWNYKKINVYRPDVECTNG-IIHVIDYPLLE 309 (324)
T ss_dssp EESSCCCHHHHHHHHHHSSSEEEECS-S-SEEEEEEEEETTEEEEEETTEEEEEEEEEEEETTE-EEEEESSCSCC
T ss_pred CCcceEcHHHHhhhccCCCeeeeecc-C-CcEEEEEEecCCEEEEEecCceeEEEEcccccCCC-eEEEeceeecC
Confidence 99 899999976431 11 36665 4 56777542 23568887 89999999999999 69999999963
No 6
>2kxc_B ESPF-like protein; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Escherichia coli}
Probab=23.75 E-value=37 Score=22.15 Aligned_cols=15 Identities=40% Similarity=0.735 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCCCC
Q 046827 182 SPPSLFPPPPPPPHS 196 (208)
Q Consensus 182 ~p~~~~p~~~~~~~~ 196 (208)
+|..++||+|++|+.
T Consensus 28 ~p~rPa~P~Pt~~~~ 42 (48)
T 2kxc_B 28 IPPAPNWPAPTPPVQ 42 (48)
T ss_pred CCCCCCCCCCCCccc
Confidence 577777777766654
No 7
>2e0g_A Chromosomal replication initiator protein DNAA; domain structure, structural genomics, NPPSFA; NMR {Escherichia coli K12}
Probab=17.71 E-value=14 Score=26.67 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=25.9
Q ss_pred hhhhHHHHHhc---CCChHHHHHHHHHhcccccccccCCCCeEEEecCCc
Q 046827 46 QLNNIIDALVG---TGDFNSWENIITAADESTSAVVAFPFSATFFIPSND 92 (208)
Q Consensus 46 ~~~~Ii~~L~~---ag~F~tlv~~L~~a~~~~~~~L~~~~~~TIFAPtD~ 92 (208)
.+.++++.|++ ...|++|++-++. .. ..+.++|.+|++-
T Consensus 4 ~W~~vl~~Lk~~l~~~~f~tWi~pl~~-~~-------~~~~l~l~vPn~F 45 (107)
T 2e0g_A 4 LWQQCLARLQDELPATEFSMWIRPLQA-EL-------SDNTLALYAPNRF 45 (107)
T ss_dssp HHHHHHHHHHHHCSCCHHHHTTTTSEE-EE-------CSSEEEEEESSHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHhCcC-cc-------cCCEEEEEeCCHH
Confidence 46677777754 4569999986643 22 2356999999853
No 8
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=16.28 E-value=1e+02 Score=21.27 Aligned_cols=29 Identities=10% Similarity=0.210 Sum_probs=23.6
Q ss_pred hhhhhhHHHHHhcCC--ChHHHHHHHHHhcc
Q 046827 44 DRQLNNIIDALVGTG--DFNSWENIITAADE 72 (208)
Q Consensus 44 ~~~~~~Ii~~L~~ag--~F~tlv~~L~~a~~ 72 (208)
...+..+++.+.+.| .|..|..+|+..+-
T Consensus 52 ~~kar~Lld~l~~kG~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 52 QQRAAMLIKMILKKDNDSYVSFYNALLHEGY 82 (94)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHcCH
Confidence 446788999999887 69999999987664
No 9
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2
Probab=15.31 E-value=83 Score=24.38 Aligned_cols=14 Identities=29% Similarity=0.555 Sum_probs=10.9
Q ss_pred CCCCCCCchhhhhh
Q 046827 192 PPPHSRDSFVEEAE 205 (208)
Q Consensus 192 ~~~~~~~~~~~~~~ 205 (208)
+-+|.++|++|++.
T Consensus 120 ~~~~~PPPY~ep~a 133 (137)
T 1jvr_A 120 PEAHVPPPYVEPTT 133 (137)
T ss_dssp SCCSCCCCCCCSSC
T ss_pred ccccCCCCCCCccc
Confidence 45688999999863
No 10
>2wp0_C Chromosomal replication initiator protein DNAA; DNA binding protein, nucleotide-binding, DNA replication initiation, DIAA, HOBA; 2.67A {Helicobacter pylori}
Probab=14.01 E-value=21 Score=26.10 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=26.7
Q ss_pred hhhhHHHHHhc--C---CChHHHHHHHH-HhcccccccccCCCCeEEEecCCc
Q 046827 46 QLNNIIDALVG--T---GDFNSWENIIT-AADESTSAVVAFPFSATFFIPSND 92 (208)
Q Consensus 46 ~~~~Ii~~L~~--a---g~F~tlv~~L~-~a~~~~~~~L~~~~~~TIFAPtD~ 92 (208)
.+.++++.|++ . ..|++|++-++ ..... ..+.++|.||++-
T Consensus 7 ~W~~vl~~Lk~~~~ls~~~f~tWi~pl~~~~~~~------~~~~l~L~vPn~F 53 (112)
T 2wp0_C 7 IEKEILALVKQNPKVSLIEYENYFSQLKYNPNAS------KSDIAFFYAPNQV 53 (112)
T ss_dssp GGGGHHHHHHTCTTCCHHHHHHTGGGCEECSSSC------CSSEEEEEESSHH
T ss_pred HHHHHHHHHHccccCCHHHHHHHHHhcchhhhcc------cCCEEEEEECCHH
Confidence 57788888876 1 24899987654 22221 0256999999864
Done!