Query 046827
Match_columns 208
No_of_seqs 137 out of 373
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 08:00:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046827.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046827hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nyoa_ b.118.1.1 (A:) Immunog 99.9 3.1E-24 2.2E-28 174.0 4.6 115 47-172 27-160 (163)
2 d1o70a1 b.118.1.1 (A:328-467) 99.8 3.6E-20 2.6E-24 142.4 3.0 116 56-172 2-137 (140)
3 d1o70a2 b.118.1.1 (A:468-624) 99.8 1.9E-20 1.4E-24 146.9 1.3 121 49-173 2-151 (157)
4 d1ok7a1 d.131.1.1 (A:1-122) DN 13.7 26 0.0019 24.0 0.8 42 106-148 69-110 (122)
5 d2raqa1 d.58.61.1 (A:3-95) Unc 9.7 59 0.0043 22.2 1.6 19 159-177 69-87 (93)
6 d1h3fa2 d.66.1.4 (A:352-432) T 8.7 98 0.0071 19.6 2.4 17 142-158 43-59 (81)
7 d1neia_ d.253.1.1 (A:) Hypothe 8.6 89 0.0065 19.5 2.0 17 131-148 5-21 (60)
8 d3ygsp_ a.77.1.3 (P:) Procaspa 8.2 1.5E+02 0.011 18.7 3.3 26 46-71 55-82 (97)
9 d3bpda1 d.58.61.1 (A:1-91) Unc 7.7 61 0.0044 22.0 0.9 29 144-172 51-82 (91)
10 d1o9ya_ b.139.1.1 (A:) Structu 7.2 2.5E+02 0.018 16.8 4.1 45 109-161 16-61 (71)
No 1
>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.88 E-value=3.1e-24 Score=174.05 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=98.0
Q ss_pred hhhHHHHHhcCCChHHHHHHHHH-----hcccccccccCCCCeEEEecCCcCCCCCC--------------ccccccccc
Q 046827 47 LNNIIDALVGTGDFNSWENIITA-----ADESTSAVVAFPFSATFFIPSNDFRFPLD--------------PFIFPYHIV 107 (208)
Q Consensus 47 ~~~Ii~~L~~ag~F~tlv~~L~~-----a~~~~~~~L~~~~~~TIFAPtD~Af~~l~--------------~~lL~yHVV 107 (208)
...|.+++....+|++|+.+|++ +++.+ +|+ .|+||||||+|+||.++. .++|+|||+
T Consensus 27 ~~~v~~~a~~~p~lstl~~Al~a~~~~~a~L~~--~L~-~gpfTvFAPtn~AF~~l~~~~~~~l~~~~~~L~~iL~yHVv 103 (163)
T d1nyoa_ 27 QDPVAVAASNNPELTTLTAALSGQLNPQVNLVD--TLN-SGQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVV 103 (163)
T ss_dssp HSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHH--HHT-SSSEEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHHTEE
T ss_pred cchHHHHHhcCCchHHHHHHHhhccccccchhH--hhc-CCCeEEEEECcHHHHhcCHHHHHhhhhhHHHHHHhhhhhhh
Confidence 45688889989999999999985 56654 465 489999999999998862 289999999
Q ss_pred CCccChhhhcccCCCCccccccCCceEEEEEcCCCceEEccEEeeCCceeecCCeEEEEeCCccC
Q 046827 108 PQRLSFSDLLLLKPLSRLPTLLPKKSILVTNTSASNFTLDDSLVFYPDLYLTSTIAVHGIQNILD 172 (208)
Q Consensus 108 Pg~ls~~dL~~l~~gs~l~T~l~g~~L~VT~~~~~~~~Vn~a~Vv~pDI~~~ngivIHgID~VL~ 172 (208)
+|+++.+++.. .+. ++.|..|.|+..+ +.++||+++|+.+||.++|| |||+||+||.
T Consensus 104 ~g~~~~~~l~~-----~~~-Tl~G~~l~v~~~~-~~i~v~~a~Vv~~di~a~NG-vIHvID~VLl 160 (163)
T d1nyoa_ 104 AGQTSPANVVG-----TRQ-TLQGASVTVTGQG-NSLKVGNADVVCGGVSTANA-TVYMIDSVLM 160 (163)
T ss_dssp ESCCCTTTSCE-----EEE-CTTSSEEEEEECS-SCEEETTEECSSBCCCCSSE-EEBCBSSCCC
T ss_pred hhhhhhhhhhh-----hhh-hccCcceeEEecC-CEEEEeceEEEECCeecCCc-EEEEECcccc
Confidence 99999999853 344 4789999999876 68999999999999999999 5999999996
No 2
>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.77 E-value=3.6e-20 Score=142.39 Aligned_cols=116 Identities=18% Similarity=0.253 Sum_probs=84.2
Q ss_pred cCCChHHHHHHHHHhcccccccccCCCCeEEEecCCcCCCCCC-----------cccccccccCCccChhhhcccCC--C
Q 046827 56 GTGDFNSWENIITAADESTSAVVAFPFSATFFIPSNDFRFPLD-----------PFIFPYHIVPQRLSFSDLLLLKP--L 122 (208)
Q Consensus 56 ~ag~F~tlv~~L~~a~~~~~~~L~~~~~~TIFAPtD~Af~~l~-----------~~lL~yHVVPg~ls~~dL~~l~~--g 122 (208)
++++|++|.++++..+......|++.+++|||||+|+||.++. ..+|+|||+||+++.++|..... .
T Consensus 2 ~~~~~~~f~~~i~~~g~~~~~~l~~~~~~TvFAPtn~Af~~~~~~~~~~~~~~l~~~l~yHiv~~~~~~~~l~~~~~~~~ 81 (140)
T d1o70a1 2 ENGALRKFYEVIMDNGGAVLDDINSLTEVTILAPSNEAWNSSNINNVLRDRNKMRQILNMHIIKDRLNVDKIRQKNANLI 81 (140)
T ss_dssp CHHHHHHHHHHHHHTCSHHHHHHHTCSSEEEEEECHHHHHHTCTHHHHTCHHHHHHHHHHTEESSCCCHHHHHHHTSSSC
T ss_pred CCccHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECHHHHhcCChhhhcCCHHHHHHHHHhhccCCeEEHHHHhcCcccCc
Confidence 3578999999998876332124667789999999999998652 38999999999999999976432 2
Q ss_pred CccccccCCceEEEEEcCC---CceEE----ccEEeeCCceeecCCeEEEEeCCccC
Q 046827 123 SRLPTLLPKKSILVTNTSA---SNFTL----DDSLVFYPDLYLTSTIAVHGIQNILD 172 (208)
Q Consensus 123 s~l~T~l~g~~L~VT~~~~---~~~~V----n~a~Vv~pDI~~~ngivIHgID~VL~ 172 (208)
..++|+..+....+...+. ..+.+ ++++|+.+||.+.|| |||.||+||.
T Consensus 82 ~~~~t~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~V~~~Di~~~NG-vIH~ID~VL~ 137 (140)
T d1o70a1 82 AQVPTVNNNTFLYFNVRGEGSDTVITVEGGGVNATVIQADVAQTNG-YVHIIDHVLG 137 (140)
T ss_dssp CCEEBSSTTCEEEEEEESCGGGCEEEEEETTEEEEEEEEEEECSSE-EEEEESSCTT
T ss_pred eEeeecCCCceEEEEEeccceeEEEEecCCcceEEEEeCCEecCCe-EEEEECCccC
Confidence 2456654444433332221 12333 458999999999999 6999999996
No 3
>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.77 E-value=1.9e-20 Score=146.95 Aligned_cols=121 Identities=15% Similarity=0.139 Sum_probs=87.2
Q ss_pred hHHHHHhcCCChHHHHHHHHHhccccccccc-CCCCeEEEecCCcCCCCCC-------------------cccccccccC
Q 046827 49 NIIDALVGTGDFNSWENIITAADESTSAVVA-FPFSATFFIPSNDFRFPLD-------------------PFIFPYHIVP 108 (208)
Q Consensus 49 ~Ii~~L~~ag~F~tlv~~L~~a~~~~~~~L~-~~~~~TIFAPtD~Af~~l~-------------------~~lL~yHVVP 108 (208)
.|+|.++...+|+.|..+++.+++.. .|. ..+++|||||+|+||.++. ..+|+|||+|
T Consensus 2 Ti~~~l~~~p~ls~~~~~~~~s~l~~--~L~~~~~~~TvFaPtn~Af~~l~~~~~~~~~~~~~~~~~~~l~~il~~Hiv~ 79 (157)
T d1o70a2 2 TVLGKLESDPMMSDTYKMGKFSHFND--QLNNTQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILERHLAI 79 (157)
T ss_dssp CHHHHHHHCGGGHHHHHHTTTTTTTG--GGGCSSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGHHHHHHHHHTTEEE
T ss_pred cHHHHHHhCccHHHHHHHHHhCCHHH--HHhCCCCceEEEecCHHHHHHhhhhccchhhhhcCcccHHHHHHHheeEEec
Confidence 58899999999999999999888764 354 3578999999999998741 2689999999
Q ss_pred CccChhhhcc--c--CCCCccccccCCc-eEEEEEcCCCceEE----ccEEeeCCceeecCCeEEEEeCCccCC
Q 046827 109 QRLSFSDLLL--L--KPLSRLPTLLPKK-SILVTNTSASNFTL----DDSLVFYPDLYLTSTIAVHGIQNILDY 173 (208)
Q Consensus 109 g~ls~~dL~~--l--~~gs~l~T~l~g~-~L~VT~~~~~~~~V----n~a~Vv~pDI~~~ngivIHgID~VL~~ 173 (208)
|+..+.+... . ..+....+++.+. .+.+...+ +.+.+ |+++|+.+|+.+.|| +||.||+||.+
T Consensus 80 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~V~~~Di~a~NG-viHvID~VLlp 151 (157)
T d1o70a2 80 SDKEYTMKDLVKFSQESGSVILPTFRDSLSIRVEEEA-GRYVIIWNYKKINVYRPDVECTNG-IIHVIDYPLLE 151 (157)
T ss_dssp ESSCCCHHHHHHHHHHSSSEEEECSSSEEEEEEEEET-TEEEEEETTEEEEEEEEEEEETTE-EEEEESSCSCC
T ss_pred ccccchhhhhhhhhccCCceeEEecCCcEEEEEEcCC-cEEEEecCCccceEEECCEecCCe-EEEEECceecC
Confidence 9876544321 1 1122222333443 33444443 44443 679999999999999 59999999963
No 4
>d1ok7a1 d.131.1.1 (A:1-122) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
Probab=13.73 E-value=26 Score=24.05 Aligned_cols=42 Identities=26% Similarity=0.282 Sum_probs=24.9
Q ss_pred ccCCccChhhhcccCCCCccccccCCceEEEEEcCCCceEEcc
Q 046827 106 IVPQRLSFSDLLLLKPLSRLPTLLPKKSILVTNTSASNFTLDD 148 (208)
Q Consensus 106 VVPg~ls~~dL~~l~~gs~l~T~l~g~~L~VT~~~~~~~~Vn~ 148 (208)
+||++...+=+++++.+..+-....+..+.|+..+ +.+.+++
T Consensus 69 ~vpak~l~divr~lp~~~~i~~~~~~~~l~i~~~~-~~f~l~~ 110 (122)
T d1ok7a1 69 TVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGR-SRFSLST 110 (122)
T ss_dssp EEEHHHHHHHHHHSCTTCEEEEEEETTEEEEEETT-EEEEEEC
T ss_pred EEeeHHHHHHHHhCCCCCcEEEEecCCEEEEEECc-eEEEEcc
Confidence 45666666666777776555444556667776543 4454444
No 5
>d2raqa1 d.58.61.1 (A:3-95) Uncharacterized protein MTH889 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=9.73 E-value=59 Score=22.21 Aligned_cols=19 Identities=5% Similarity=0.114 Sum_probs=12.7
Q ss_pred cCCeEEEEeCCccCCcCCC
Q 046827 159 TSTIAVHGIQNILDYSVYG 177 (208)
Q Consensus 159 ~ngivIHgID~VL~~~~~g 177 (208)
+-|.+||-||.|.--...-
T Consensus 69 ~~Gg~IHSIDeV~aG~~iv 87 (93)
T d2raqa1 69 SYGGSIHSVDEVVAGRTMV 87 (93)
T ss_dssp HTTCEEEEEEEEEEESSCC
T ss_pred HcCCeEEEEeeeeecceec
Confidence 3455899999997543333
No 6
>d1h3fa2 d.66.1.4 (A:352-432) Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=8.69 E-value=98 Score=19.63 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=14.1
Q ss_pred CceEEccEEeeCCceee
Q 046827 142 SNFTLDDSLVFYPDLYL 158 (208)
Q Consensus 142 ~~~~Vn~a~Vv~pDI~~ 158 (208)
++++|||.+|..++...
T Consensus 43 g~V~iN~~ki~d~~~~l 59 (81)
T d1h3fa2 43 RGLRLDGEVLTDPMLQV 59 (81)
T ss_dssp TCEEETTEECCCTTCEE
T ss_pred CCEEECCEEecCcccee
Confidence 67999999998887654
No 7
>d1neia_ d.253.1.1 (A:) Hypothetical protein YoaG {Escherichia coli [TaxId: 562]}
Probab=8.60 E-value=89 Score=19.45 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=12.8
Q ss_pred CceEEEEEcCCCceEEcc
Q 046827 131 KKSILVTNTSASNFTLDD 148 (208)
Q Consensus 131 g~~L~VT~~~~~~~~Vn~ 148 (208)
+..++||+++ .+++|+.
T Consensus 5 ~~~lTvTNnn-NGVSVD~ 21 (60)
T d1neia_ 5 TYTVTVTNNS-NGVSVDY 21 (60)
T ss_dssp CEEEEEEETT-TCCEEEE
T ss_pred eEEEEEEeCC-CceEecc
Confidence 5678899987 5677765
No 8
>d3ygsp_ a.77.1.3 (P:) Procaspase 9 prodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.21 E-value=1.5e+02 Score=18.65 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=19.6
Q ss_pred hhhhHHHHHhcCCC--hHHHHHHHHHhc
Q 046827 46 QLNNIIDALVGTGD--FNSWENIITAAD 71 (208)
Q Consensus 46 ~~~~Ii~~L~~ag~--F~tlv~~L~~a~ 71 (208)
....+++.|...|. |..|+.+|+..+
T Consensus 55 ~~~~LL~~L~~rg~~af~~F~~aL~~~~ 82 (97)
T d3ygsp_ 55 QARQLIIDLETRGSQALPLFISCLEDTG 82 (97)
T ss_dssp HHHHHHHHHTTSCTTHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCChhHHHHHHHHHHccC
Confidence 35678999976544 899999887765
No 9
>d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.65 E-value=61 Score=22.04 Aligned_cols=29 Identities=10% Similarity=0.184 Sum_probs=17.3
Q ss_pred eEEccEEeeCCcee---ecCCeEEEEeCCccC
Q 046827 144 FTLDDSLVFYPDLY---LTSTIAVHGIQNILD 172 (208)
Q Consensus 144 ~~Vn~a~Vv~pDI~---~~ngivIHgID~VL~ 172 (208)
++|-|..+-.-+|. -+-|.+||-||.|--
T Consensus 51 ItiEG~~idyd~i~~~IE~~Gg~IHSIDeV~a 82 (91)
T d3bpda1 51 ITILGNNLDYEQIKGVIEDMGGVIHSVDEVVA 82 (91)
T ss_dssp EEEEEEEECHHHHHHHHHTTTCEEEEEEEEEE
T ss_pred EEEEecCCCHHHHHHHHHHcCCeEEEEhheee
Confidence 45555544433332 244558999999864
No 10
>d1o9ya_ b.139.1.1 (A:) Structural protein HrcQ2, C-terminal domain {Pseudomonas syringae [TaxId: 317]}
Probab=7.24 E-value=2.5e+02 Score=16.76 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=25.6
Q ss_pred CccChhhhcccCCCCcccccc-CCceEEEEEcCCCceEEccEEeeCCceeecCC
Q 046827 109 QRLSFSDLLLLKPLSRLPTLL-PKKSILVTNTSASNFTLDDSLVFYPDLYLTST 161 (208)
Q Consensus 109 g~ls~~dL~~l~~gs~l~T~l-~g~~L~VT~~~~~~~~Vn~a~Vv~pDI~~~ng 161 (208)
.+++..||.++..|+.++--. ....+ .+++||..+-...+-.-+|
T Consensus 16 ~~~~l~el~~L~~G~vl~l~~~~~~~V--------~l~v~g~~i~~G~l~~~~~ 61 (71)
T d1o9ya_ 16 LRLTLAELRRLDAGTILEVTGISPGHA--------TLCHGEQVVAEGELVDVEG 61 (71)
T ss_dssp EEEEHHHHHTCCTTCEEEECSSCTTEE--------EEEETTEEEEEEEEEEETT
T ss_pred cEeEHHHHhccCCCCEEEeCCCCCCCE--------EEEECCEEEEEEEEEEECC
Confidence 467889998887776553210 11222 3556666666666655444
Done!