BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046828
(627 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 21/107 (19%)
Query: 370 KDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPXXXXXXXXXXXQ 429
K I+ + V+ +AHT+PI + +R ++ T S G I +F+
Sbjct: 182 KAILGKGVL--IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFK--------------- 224
Query: 430 TYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIF 476
T V + + RG+ A + D+ +S +A+VS + T H+F
Sbjct: 225 ----TEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVF 267
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 19/95 (20%)
Query: 382 RAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPXXXXXXXXXXXQTYDWTSSHVHLY 441
+AH +P+ + +R G ++ T S G I +F+ T + V +
Sbjct: 176 KAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQ-------------------TDNGVLVR 216
Query: 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIF 476
+ RG+ I D+ +S +A+VS + T H+F
Sbjct: 217 EFRRGLDRTSIIDMRWSPDGSKLAVVSDKWTLHVF 251
>pdb|3LNN|A Chain A, Crystal Structure Of Zneb From Cupriavidus Metallidurans
pdb|3LNN|B Chain B, Crystal Structure Of Zneb From Cupriavidus Metallidurans
Length = 359
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 147 AKNSGLVHVHVGRDGLVR-DGYDEPQPGNV 175
A+ L HV+VG+ V+ D YD+PQPG V
Sbjct: 214 AQEKDLGHVYVGQSATVKFDAYDDPQPGKV 243
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG 407
V + D+ + + AH+ P+SA+ F+R G+L+V++S G
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG 407
V + D+ + + AH+ P+SA+ F+R G+L+V++S G
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG 407
V + D+ + + AH+ P+SA+ F+R G+L+V++S G
Sbjct: 155 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG 407
V + D+ + + AH+ P+SA+ F+R G+L+V++S G
Sbjct: 148 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 188
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG 407
V + D+ + + AH+ P+SA+ F+R G+L+V++S G
Sbjct: 127 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 167
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG 407
V + D+ + + AH+ P+SA+ F+R G+L+V++S G
Sbjct: 130 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 170
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG 407
V + D+ + + AH+ P+SA+ F+R G+L+V++S G
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG 407
V + D+ + + AH+ P+SA+ F+R G+L+V++S G
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG 407
V + D+ + + AH+ P+SA+ F+R G+L+V++S G
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG 407
V + D+ + + AH+ P+SA+ F+R G+L+V++S G
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG 407
V + D+ + + AH+ P+SA+ F+R G+L+V++S G
Sbjct: 136 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 176
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG 407
V + D+ + + AH+ P+SA+ F+R G+L+V++S G
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG 407
V + D+ + + AH+ P+SA+ F+R G+L+V++S G
Sbjct: 132 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 172
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG 407
V + D+ + + AH+ P+SA+ F+R G+L+V++S G
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG 407
V + D+ + + AH+ P+SA+ F+R G+L+V++S G
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG 407
V + D+ + + AH+ P+SA+ F+R G+L+V++S G
Sbjct: 134 VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG 407
V + D+ + + AH+ P+SA+ F+R G+L+V++S G
Sbjct: 134 VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG 407
I G++ + DI + ++ H PI +L F LLVTAS G
Sbjct: 184 IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,682,782
Number of Sequences: 62578
Number of extensions: 518633
Number of successful extensions: 870
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 850
Number of HSP's gapped (non-prelim): 22
length of query: 627
length of database: 14,973,337
effective HSP length: 105
effective length of query: 522
effective length of database: 8,402,647
effective search space: 4386181734
effective search space used: 4386181734
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)