Query 046828
Match_columns 627
No_of_seqs 392 out of 2221
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 04:52:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046828.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046828hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2109 WD40 repeat protein [G 100.0 3.4E-50 7.4E-55 434.4 15.1 500 25-619 1-505 (788)
2 KOG2110 Uncharacterized conser 100.0 1.2E-46 2.6E-51 385.5 33.6 324 60-616 3-341 (391)
3 KOG2111 Uncharacterized conser 100.0 1E-42 2.2E-47 351.1 33.0 323 62-617 5-334 (346)
4 KOG0271 Notchless-like WD40 re 99.9 3.2E-22 6.9E-27 206.4 25.8 331 57-494 110-454 (480)
5 KOG0263 Transcription initiati 99.9 3.7E-22 8E-27 221.3 22.7 176 179-481 472-651 (707)
6 KOG0272 U4/U6 small nuclear ri 99.9 4.1E-22 8.8E-27 207.9 19.7 268 57-503 170-442 (459)
7 KOG0272 U4/U6 small nuclear ri 99.9 1.8E-21 3.9E-26 203.1 17.8 240 59-477 214-458 (459)
8 cd00200 WD40 WD40 domain, foun 99.8 3.2E-18 7E-23 169.3 32.6 251 60-491 7-261 (289)
9 KOG0271 Notchless-like WD40 re 99.8 1.5E-19 3.3E-24 186.7 20.5 253 46-477 173-479 (480)
10 cd00200 WD40 WD40 domain, foun 99.8 1.5E-17 3.3E-22 164.4 31.8 235 62-477 51-289 (289)
11 KOG0315 G-protein beta subunit 99.8 1.1E-18 2.4E-23 172.1 23.1 267 81-482 11-291 (311)
12 KOG0273 Beta-transducin family 99.8 7.1E-18 1.5E-22 178.3 27.2 283 62-479 235-523 (524)
13 KOG0286 G-protein beta subunit 99.8 1E-17 2.2E-22 168.6 26.5 224 79-477 108-343 (343)
14 KOG0266 WD40 repeat-containing 99.8 2.5E-17 5.4E-22 182.9 31.4 237 80-490 171-420 (456)
15 PLN00181 protein SPA1-RELATED; 99.8 2.2E-17 4.8E-22 195.1 32.6 227 81-478 546-792 (793)
16 KOG0286 G-protein beta subunit 99.8 4E-17 8.7E-22 164.3 29.1 259 60-496 53-320 (343)
17 KOG1036 Mitotic spindle checkp 99.8 9.6E-19 2.1E-23 177.1 17.6 246 57-406 49-295 (323)
18 KOG0647 mRNA export protein (c 99.8 9.6E-19 2.1E-23 176.6 16.6 257 41-405 50-313 (347)
19 KOG0279 G protein beta subunit 99.8 2.6E-17 5.7E-22 164.8 24.7 218 178-482 36-265 (315)
20 KOG0281 Beta-TrCP (transducin 99.8 6.2E-19 1.3E-23 180.3 12.2 238 52-481 188-430 (499)
21 KOG0315 G-protein beta subunit 99.8 1.8E-17 3.9E-22 163.7 21.6 233 178-492 18-259 (311)
22 KOG0266 WD40 repeat-containing 99.8 3.9E-17 8.4E-22 181.4 26.3 191 178-492 179-377 (456)
23 KOG0295 WD40 repeat-containing 99.8 8E-18 1.7E-22 173.4 18.4 184 180-492 172-377 (406)
24 PLN00181 protein SPA1-RELATED; 99.8 4.4E-16 9.4E-21 184.1 35.3 179 179-479 554-738 (793)
25 KOG0291 WD40-repeat-containing 99.8 1.3E-16 2.8E-21 176.3 27.1 227 82-482 320-553 (893)
26 KOG0273 Beta-transducin family 99.8 5.6E-17 1.2E-21 171.6 23.0 196 179-483 256-486 (524)
27 KOG0295 WD40 repeat-containing 99.8 5.5E-17 1.2E-21 167.2 22.1 251 61-477 149-404 (406)
28 KOG0318 WD40 repeat stress pro 99.8 7.2E-16 1.5E-20 165.0 29.7 328 61-484 189-565 (603)
29 KOG0265 U5 snRNP-specific prot 99.8 2.5E-16 5.5E-21 159.1 24.2 262 59-496 44-313 (338)
30 KOG0319 WD40-repeat-containing 99.7 1.4E-16 2.9E-21 176.0 23.6 233 180-495 303-551 (775)
31 KOG0263 Transcription initiati 99.7 1.9E-17 4.2E-22 184.1 16.9 175 192-493 443-621 (707)
32 KOG0278 Serine/threonine kinas 99.7 2.7E-17 5.8E-22 162.5 15.9 199 59-417 97-298 (334)
33 KOG0279 G protein beta subunit 99.7 6.2E-16 1.3E-20 155.0 25.6 227 79-480 74-314 (315)
34 KOG0274 Cdc4 and related F-box 99.7 4E-16 8.6E-21 175.2 24.0 231 81-489 219-451 (537)
35 PTZ00421 coronin; Provisional 99.7 5.3E-15 1.2E-19 165.3 31.4 222 90-482 51-293 (493)
36 KOG0291 WD40-repeat-containing 99.7 5.1E-15 1.1E-19 163.8 29.9 216 179-501 286-530 (893)
37 KOG0268 Sof1-like rRNA process 99.7 8.3E-17 1.8E-21 165.8 14.8 273 59-481 63-347 (433)
38 KOG1446 Histone H3 (Lys4) meth 99.7 1.7E-14 3.8E-19 146.9 31.3 242 61-482 13-265 (311)
39 KOG0284 Polyadenylation factor 99.7 1E-16 2.3E-21 167.1 15.1 240 58-479 92-337 (464)
40 KOG0274 Cdc4 and related F-box 99.7 1.8E-15 3.9E-20 169.9 25.7 224 81-485 262-488 (537)
41 KOG0319 WD40-repeat-containing 99.7 7.4E-16 1.6E-20 170.3 21.9 114 360-495 480-593 (775)
42 KOG0285 Pleiotropic regulator 99.7 8.3E-16 1.8E-20 158.2 20.6 223 81-480 164-390 (460)
43 KOG0316 Conserved WD40 repeat- 99.7 9.3E-16 2E-20 150.6 19.7 217 179-483 38-261 (307)
44 KOG0310 Conserved WD40 repeat- 99.7 3.8E-15 8.1E-20 158.6 24.3 234 60-478 66-308 (487)
45 KOG0292 Vesicle coat complex C 99.7 1.1E-15 2.4E-20 171.0 21.2 262 81-488 21-289 (1202)
46 KOG0288 WD40 repeat protein Ti 99.7 5.2E-16 1.1E-20 162.2 17.1 224 80-477 231-459 (459)
47 KOG2055 WD40 repeat protein [G 99.7 1.2E-15 2.6E-20 161.3 19.7 255 58-481 243-514 (514)
48 KOG0276 Vesicle coat complex C 99.7 7.8E-16 1.7E-20 167.2 18.1 224 180-488 35-266 (794)
49 KOG0285 Pleiotropic regulator 99.7 9.7E-16 2.1E-20 157.7 17.5 186 178-493 171-362 (460)
50 KOG0265 U5 snRNP-specific prot 99.7 9.1E-15 2E-19 147.9 23.7 226 79-478 101-337 (338)
51 KOG0305 Anaphase promoting com 99.7 8E-15 1.7E-19 160.5 25.0 240 62-481 217-463 (484)
52 PF12490 BCAS3: Breast carcino 99.7 5.9E-17 1.3E-21 165.7 6.5 89 525-613 1-92 (251)
53 KOG0282 mRNA splicing factor [ 99.7 5E-16 1.1E-20 164.9 13.4 260 60-494 212-477 (503)
54 KOG0306 WD40-repeat-containing 99.7 8.4E-15 1.8E-19 162.1 22.3 223 81-480 424-665 (888)
55 PTZ00420 coronin; Provisional 99.7 1.1E-13 2.5E-18 156.2 31.3 222 88-480 52-294 (568)
56 KOG0310 Conserved WD40 repeat- 99.6 8E-15 1.7E-19 156.1 20.2 246 57-483 21-272 (487)
57 PTZ00421 coronin; Provisional 99.6 2.2E-13 4.7E-18 152.4 32.4 248 60-481 73-333 (493)
58 KOG0318 WD40 repeat stress pro 99.6 6.5E-14 1.4E-18 150.2 26.4 103 360-483 165-269 (603)
59 KOG0292 Vesicle coat complex C 99.6 4.7E-15 1E-19 166.1 18.3 207 180-495 31-254 (1202)
60 KOG0643 Translation initiation 99.6 1.3E-13 2.8E-18 137.7 26.2 257 61-479 9-317 (327)
61 KOG1407 WD40 repeat protein [F 99.6 1.8E-14 4E-19 143.4 19.9 244 57-480 15-262 (313)
62 KOG0645 WD40 repeat protein [G 99.6 2.3E-13 4.9E-18 136.3 27.4 261 58-479 10-311 (312)
63 KOG0276 Vesicle coat complex C 99.6 1.7E-14 3.7E-19 156.9 20.9 262 81-475 26-295 (794)
64 KOG0277 Peroxisomal targeting 99.6 1.8E-14 4E-19 142.9 18.3 193 179-496 82-283 (311)
65 PTZ00420 coronin; Provisional 99.6 4.1E-13 8.8E-18 151.7 31.4 129 60-239 72-210 (568)
66 KOG0645 WD40 repeat protein [G 99.6 2.6E-13 5.7E-18 135.9 25.7 175 179-479 36-225 (312)
67 KOG0313 Microtubule binding pr 99.6 1E-13 2.3E-18 143.9 23.4 264 80-494 115-392 (423)
68 KOG0293 WD40 repeat-containing 99.6 4.4E-14 9.5E-19 147.8 19.7 281 59-481 221-515 (519)
69 KOG1407 WD40 repeat protein [F 99.6 2.4E-13 5.2E-18 135.5 23.6 230 71-479 68-311 (313)
70 KOG0296 Angio-associated migra 99.6 1.2E-12 2.6E-17 135.6 27.4 287 58-479 102-398 (399)
71 KOG0281 Beta-TrCP (transducin 99.6 1.5E-14 3.2E-19 148.5 13.3 178 179-480 296-478 (499)
72 KOG0284 Polyadenylation factor 99.6 1.8E-14 3.9E-19 150.6 13.7 228 81-484 150-385 (464)
73 KOG0313 Microtubule binding pr 99.6 4.8E-13 1E-17 139.0 22.9 224 81-481 160-420 (423)
74 TIGR03866 PQQ_ABC_repeats PQQ- 99.5 8.9E-12 1.9E-16 127.4 30.4 177 180-484 95-284 (300)
75 KOG0277 Peroxisomal targeting 99.5 1.6E-13 3.5E-18 136.3 16.7 247 60-477 47-307 (311)
76 KOG0289 mRNA splicing factor [ 99.5 1.9E-13 4.2E-18 143.8 17.7 215 180-478 241-461 (506)
77 KOG0973 Histone transcription 99.5 1.3E-12 2.8E-17 150.3 25.2 294 79-481 24-357 (942)
78 KOG0264 Nucleosome remodeling 99.5 1E-12 2.2E-17 139.2 22.4 112 360-480 290-405 (422)
79 KOG0282 mRNA splicing factor [ 99.5 1.3E-13 2.7E-18 146.9 14.4 232 60-477 256-503 (503)
80 KOG0305 Anaphase promoting com 99.5 1.9E-12 4.1E-17 142.1 23.2 246 80-501 187-441 (484)
81 KOG0275 Conserved WD40 repeat- 99.5 1E-13 2.2E-18 141.1 12.2 182 360-604 280-466 (508)
82 KOG1539 WD repeat protein [Gen 99.5 6.4E-12 1.4E-16 141.0 26.9 98 360-480 551-649 (910)
83 KOG0643 Translation initiation 99.5 3.7E-12 8E-17 127.5 21.5 184 180-486 32-227 (327)
84 KOG1408 WD40 repeat protein [F 99.5 9.7E-13 2.1E-17 144.9 18.6 213 180-480 481-714 (1080)
85 KOG2445 Nuclear pore complex c 99.5 1.7E-11 3.8E-16 124.7 26.2 115 364-481 198-320 (361)
86 KOG0288 WD40 repeat protein Ti 99.5 3.8E-13 8.2E-18 141.0 14.6 224 81-481 188-419 (459)
87 KOG0308 Conserved WD40 repeat- 99.5 9E-13 1.9E-17 144.4 18.1 106 360-487 188-293 (735)
88 KOG0267 Microtubule severing p 99.5 8.9E-14 1.9E-18 153.6 9.6 213 81-470 41-259 (825)
89 KOG0973 Histone transcription 99.5 2.2E-13 4.8E-18 156.5 12.6 151 363-519 35-199 (942)
90 KOG2096 WD40 repeat protein [G 99.5 5.5E-12 1.2E-16 128.7 21.1 99 377-477 270-400 (420)
91 KOG0264 Nucleosome remodeling 99.5 2.6E-12 5.7E-17 136.1 19.3 106 360-486 245-354 (422)
92 KOG1274 WD40 repeat protein [G 99.4 1.4E-11 3.1E-16 139.5 25.0 239 60-480 11-263 (933)
93 KOG0641 WD40 repeat protein [G 99.4 1.1E-10 2.3E-15 114.5 27.7 252 61-479 88-349 (350)
94 KOG0278 Serine/threonine kinas 99.4 1.3E-12 2.9E-17 129.5 14.2 216 175-481 76-299 (334)
95 KOG0283 WD40 repeat-containing 99.4 1E-11 2.2E-16 139.8 22.7 184 171-482 381-579 (712)
96 KOG0306 WD40-repeat-containing 99.4 2.7E-12 5.9E-17 142.5 17.4 143 362-517 431-576 (888)
97 KOG0269 WD40 repeat-containing 99.4 2.2E-12 4.7E-17 143.8 16.5 116 361-497 195-315 (839)
98 KOG0316 Conserved WD40 repeat- 99.4 5.7E-12 1.2E-16 124.2 17.2 130 360-491 76-225 (307)
99 KOG0308 Conserved WD40 repeat- 99.4 7.2E-13 1.6E-17 145.1 12.1 190 179-494 46-258 (735)
100 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 8.1E-11 1.7E-15 120.3 25.3 175 179-481 10-189 (300)
101 KOG0647 mRNA export protein (c 99.4 1.5E-10 3.2E-15 117.8 25.9 277 60-515 25-318 (347)
102 KOG4283 Transcription-coupled 99.4 4.3E-11 9.3E-16 121.2 21.9 138 68-239 44-189 (397)
103 KOG0772 Uncharacterized conser 99.4 1.2E-11 2.5E-16 132.8 18.6 111 360-490 334-456 (641)
104 KOG0640 mRNA cleavage stimulat 99.4 5.8E-12 1.3E-16 128.1 15.4 98 365-482 238-338 (430)
105 KOG0283 WD40 repeat-containing 99.4 3.8E-11 8.2E-16 135.3 22.1 99 360-482 385-484 (712)
106 KOG0301 Phospholipase A2-activ 99.4 3.2E-11 6.9E-16 133.3 20.0 216 81-481 72-290 (745)
107 KOG0275 Conserved WD40 repeat- 99.3 8.8E-12 1.9E-16 127.2 13.0 216 176-497 231-485 (508)
108 KOG0267 Microtubule severing p 99.3 1.8E-12 3.9E-17 143.4 8.5 176 180-482 50-229 (825)
109 KOG0289 mRNA splicing factor [ 99.3 2.3E-10 5E-15 120.9 23.3 238 62-478 261-505 (506)
110 KOG1539 WD repeat protein [Gen 99.3 4.3E-11 9.3E-16 134.5 18.4 129 179-415 514-647 (910)
111 KOG1332 Vesicle coat complex C 99.3 6.6E-11 1.4E-15 117.3 17.4 263 58-482 7-289 (299)
112 KOG0302 Ribosome Assembly prot 99.3 4.2E-11 9.1E-16 124.6 16.5 101 360-480 275-379 (440)
113 KOG0296 Angio-associated migra 99.3 1.6E-10 3.5E-15 119.9 20.8 175 180-480 86-264 (399)
114 KOG0772 Uncharacterized conser 99.3 2.5E-11 5.4E-16 130.3 14.4 107 360-484 286-399 (641)
115 KOG1036 Mitotic spindle checkp 99.3 5.9E-10 1.3E-14 113.8 23.3 247 58-482 9-265 (323)
116 KOG0299 U3 snoRNP-associated p 99.3 1.1E-10 2.4E-15 124.1 18.5 219 79-471 213-447 (479)
117 KOG4283 Transcription-coupled 99.3 1.1E-10 2.3E-15 118.4 17.1 110 363-480 166-277 (397)
118 KOG0639 Transducin-like enhanc 99.3 5.6E-11 1.2E-15 127.1 15.6 224 81-483 432-666 (705)
119 KOG0294 WD40 repeat-containing 99.3 2.5E-10 5.4E-15 116.8 19.2 219 80-416 53-281 (362)
120 KOG2109 WD40 repeat protein [G 99.3 6.8E-12 1.5E-16 138.1 8.5 107 376-492 483-589 (788)
121 KOG1273 WD40 repeat protein [G 99.3 3.6E-10 7.9E-15 115.5 20.2 253 65-485 26-285 (405)
122 KOG0299 U3 snoRNP-associated p 99.3 2.4E-10 5.2E-15 121.6 19.6 177 179-480 223-411 (479)
123 KOG0307 Vesicle coat complex C 99.3 1.9E-11 4E-16 141.5 12.1 247 68-481 65-329 (1049)
124 KOG2919 Guanine nucleotide-bin 99.3 7.3E-10 1.6E-14 113.7 22.0 130 365-513 230-362 (406)
125 KOG0293 WD40 repeat-containing 99.3 8.8E-11 1.9E-15 123.3 15.6 185 80-416 324-513 (519)
126 KOG4378 Nuclear protein COP1 [ 99.3 4.8E-11 1E-15 127.5 13.6 192 179-496 100-298 (673)
127 KOG2096 WD40 repeat protein [G 99.2 2E-10 4.3E-15 117.5 16.7 106 360-480 204-309 (420)
128 KOG0294 WD40 repeat-containing 99.2 2.4E-10 5.1E-15 116.9 17.1 129 360-497 102-255 (362)
129 KOG1274 WD40 repeat protein [G 99.2 1.5E-09 3.1E-14 123.5 24.8 235 61-476 55-297 (933)
130 KOG1446 Histone H3 (Lys4) meth 99.2 3.4E-09 7.4E-14 108.6 25.1 99 362-484 77-175 (311)
131 KOG0300 WD40 repeat-containing 99.2 3.7E-10 8E-15 115.3 17.1 253 186-490 130-398 (481)
132 KOG0639 Transducin-like enhanc 99.2 1.3E-10 2.8E-15 124.4 14.1 218 79-479 476-704 (705)
133 KOG2048 WD40 repeat protein [G 99.2 1.7E-09 3.6E-14 119.7 22.7 189 179-494 46-248 (691)
134 KOG0269 WD40 repeat-containing 99.2 1.4E-10 3E-15 129.6 13.5 220 81-474 100-335 (839)
135 PRK01742 tolB translocation pr 99.2 4.1E-09 9E-14 116.4 24.2 81 389-494 336-418 (429)
136 KOG0641 WD40 repeat protein [G 99.2 2.2E-08 4.9E-13 98.4 26.2 98 360-479 199-303 (350)
137 KOG0301 Phospholipase A2-activ 99.2 5.5E-10 1.2E-14 123.7 16.7 202 179-480 34-250 (745)
138 KOG2106 Uncharacterized conser 99.2 1.3E-08 2.8E-13 109.5 26.3 268 61-476 245-518 (626)
139 COG2319 FOG: WD40 repeat [Gene 99.2 1.5E-07 3.3E-12 97.0 33.8 250 60-485 63-320 (466)
140 KOG0268 Sof1-like rRNA process 99.2 2.6E-10 5.7E-15 118.3 12.7 216 176-481 85-304 (433)
141 PRK11028 6-phosphogluconolacto 99.2 4.4E-08 9.6E-13 103.9 29.9 107 363-485 146-264 (330)
142 KOG0270 WD40 repeat-containing 99.1 3.1E-09 6.8E-14 112.8 19.8 101 361-481 348-451 (463)
143 KOG1408 WD40 repeat protein [F 99.1 1.2E-08 2.5E-13 113.4 24.6 95 386-499 597-691 (1080)
144 KOG0300 WD40 repeat-containing 99.1 6.9E-09 1.5E-13 106.2 20.5 278 50-481 136-430 (481)
145 KOG0646 WD40 repeat protein [G 99.1 6.9E-10 1.5E-14 118.3 13.7 107 362-481 100-208 (476)
146 KOG0640 mRNA cleavage stimulat 99.1 2.1E-09 4.5E-14 109.8 16.5 117 360-478 278-425 (430)
147 PRK11028 6-phosphogluconolacto 99.1 4.9E-08 1.1E-12 103.5 27.9 103 363-483 195-308 (330)
148 KOG1009 Chromatin assembly com 99.1 7.8E-10 1.7E-14 116.3 13.6 148 360-513 31-187 (434)
149 KOG0646 WD40 repeat protein [G 99.1 1.2E-09 2.6E-14 116.5 15.0 248 181-488 62-316 (476)
150 KOG1034 Transcriptional repres 99.1 6.5E-09 1.4E-13 107.0 19.7 102 81-229 106-214 (385)
151 KOG2048 WD40 repeat protein [G 99.1 2.8E-08 6E-13 110.2 26.0 249 56-480 66-320 (691)
152 KOG2055 WD40 repeat protein [G 99.1 3.9E-09 8.4E-14 112.5 18.0 95 362-480 322-418 (514)
153 KOG1188 WD40 repeat protein [G 99.1 1.4E-09 3.1E-14 112.3 14.3 183 179-483 49-246 (376)
154 KOG1272 WD40-repeat-containing 99.1 2E-10 4.3E-15 122.3 7.5 210 180-481 151-364 (545)
155 KOG2106 Uncharacterized conser 99.0 9.5E-08 2.1E-12 103.0 25.3 99 360-485 385-483 (626)
156 PRK03629 tolB translocation pr 99.0 1.9E-07 4E-12 103.4 28.6 102 367-494 313-420 (429)
157 KOG4328 WD40 protein [Function 99.0 1.9E-08 4.1E-13 107.3 19.2 238 76-479 195-450 (498)
158 KOG2110 Uncharacterized conser 99.0 3.8E-07 8.2E-12 95.5 28.4 192 181-482 107-333 (391)
159 COG2319 FOG: WD40 repeat [Gene 99.0 4.3E-07 9.4E-12 93.6 29.1 228 82-482 125-362 (466)
160 KOG0650 WD40 repeat nucleolar 99.0 2.2E-08 4.7E-13 109.7 19.7 289 80-476 412-732 (733)
161 KOG1332 Vesicle coat complex C 99.0 5.5E-09 1.2E-13 103.9 12.9 100 361-480 122-242 (299)
162 KOG1007 WD repeat protein TSSC 99.0 3.3E-08 7.2E-13 100.4 18.6 121 360-481 232-363 (370)
163 KOG4378 Nuclear protein COP1 [ 99.0 1.8E-08 3.9E-13 108.2 17.1 182 81-416 92-280 (673)
164 PRK05137 tolB translocation pr 99.0 6.3E-07 1.4E-11 99.2 29.7 94 366-483 315-414 (435)
165 KOG0307 Vesicle coat complex C 99.0 2.4E-09 5.1E-14 124.4 10.6 101 360-480 179-285 (1049)
166 KOG1445 Tumor-specific antigen 99.0 1E-08 2.2E-13 112.5 14.8 102 360-481 695-800 (1012)
167 KOG4328 WD40 protein [Function 98.9 1.8E-08 4E-13 107.4 15.8 98 364-479 300-399 (498)
168 KOG2111 Uncharacterized conser 98.9 1.5E-06 3.3E-11 89.5 29.1 119 363-485 201-328 (346)
169 KOG0302 Ribosome Assembly prot 98.9 1E-08 2.3E-13 107.1 13.5 113 360-492 229-348 (440)
170 KOG1034 Transcriptional repres 98.9 2.6E-08 5.6E-13 102.7 16.0 100 361-481 111-213 (385)
171 KOG1587 Cytoplasmic dynein int 98.9 9.3E-08 2E-12 107.8 21.5 98 363-480 418-517 (555)
172 KOG0303 Actin-binding protein 98.9 1.9E-08 4.1E-13 105.7 14.3 102 360-483 149-253 (472)
173 KOG0290 Conserved WD40 repeat- 98.9 7.2E-08 1.6E-12 98.1 18.0 175 179-470 172-357 (364)
174 KOG1445 Tumor-specific antigen 98.9 5.9E-09 1.3E-13 114.3 10.8 98 361-480 646-751 (1012)
175 KOG0650 WD40 repeat nucleolar 98.9 5.3E-08 1.1E-12 106.7 17.4 121 363-506 544-665 (733)
176 KOG0322 G-protein beta subunit 98.9 2.4E-08 5.1E-13 100.4 12.8 70 387-478 253-322 (323)
177 PRK04922 tolB translocation pr 98.8 1E-06 2.2E-11 97.5 26.2 94 366-483 317-413 (433)
178 KOG0270 WD40 repeat-containing 98.8 1.3E-07 2.7E-12 100.8 17.5 130 58-240 239-375 (463)
179 KOG1063 RNA polymerase II elon 98.8 2.2E-07 4.9E-12 103.4 19.1 103 376-483 182-301 (764)
180 KOG0321 WD40 repeat-containing 98.8 1.9E-07 4.1E-12 103.1 17.5 100 363-484 291-396 (720)
181 KOG0321 WD40 repeat-containing 98.8 1.9E-07 4.1E-12 103.1 17.2 122 361-501 236-370 (720)
182 PRK02889 tolB translocation pr 98.7 6.1E-06 1.3E-10 91.3 28.2 72 389-483 331-405 (427)
183 KOG0771 Prolactin regulatory e 98.7 1.7E-07 3.8E-12 99.3 14.9 74 386-480 282-355 (398)
184 KOG0644 Uncharacterized conser 98.7 6.9E-08 1.5E-12 109.0 12.1 98 361-480 371-469 (1113)
185 KOG1273 WD40 repeat protein [G 98.7 5.3E-08 1.2E-12 99.9 10.2 121 359-487 39-191 (405)
186 KOG2445 Nuclear pore complex c 98.7 4.4E-07 9.6E-12 93.0 16.4 40 376-416 279-318 (361)
187 KOG1963 WD40 repeat protein [G 98.7 2.5E-06 5.5E-11 97.4 24.0 99 360-481 222-324 (792)
188 PF08662 eIF2A: Eukaryotic tra 98.7 1.6E-06 3.5E-11 85.8 19.8 90 363-479 81-179 (194)
189 KOG0642 Cell-cycle nuclear pro 98.7 6.1E-08 1.3E-12 105.7 9.9 110 359-480 310-427 (577)
190 KOG1009 Chromatin assembly com 98.7 3.9E-06 8.5E-11 88.9 22.3 305 61-482 12-375 (434)
191 PRK05137 tolB translocation pr 98.6 4.7E-06 1E-10 92.3 23.8 96 365-483 270-368 (435)
192 PF10282 Lactonase: Lactonase, 98.6 3.3E-05 7.1E-10 83.1 29.0 82 387-486 246-329 (345)
193 KOG1063 RNA polymerase II elon 98.6 7.8E-08 1.7E-12 106.9 8.8 100 364-481 551-650 (764)
194 KOG0771 Prolactin regulatory e 98.6 1.3E-07 2.8E-12 100.3 9.7 141 360-502 161-335 (398)
195 PRK01742 tolB translocation pr 98.6 1.3E-06 2.8E-11 96.7 18.2 88 367-480 274-362 (429)
196 KOG1007 WD repeat protein TSSC 98.6 2.6E-06 5.7E-11 86.8 18.3 100 362-482 190-292 (370)
197 PRK00178 tolB translocation pr 98.6 7.2E-05 1.6E-09 82.5 30.3 51 180-230 223-279 (430)
198 PF08662 eIF2A: Eukaryotic tra 98.6 3.2E-06 7E-11 83.6 17.4 52 363-416 123-179 (194)
199 PRK03629 tolB translocation pr 98.6 8.3E-06 1.8E-10 90.3 22.6 93 366-479 268-363 (429)
200 KOG0290 Conserved WD40 repeat- 98.5 3.2E-06 6.9E-11 86.3 16.8 103 360-482 214-321 (364)
201 COG2706 3-carboxymuconate cycl 98.5 0.0002 4.3E-09 75.5 30.3 107 362-486 210-328 (346)
202 PRK04922 tolB translocation pr 98.5 1.1E-05 2.3E-10 89.5 22.4 93 365-479 272-368 (433)
203 KOG3881 Uncharacterized conser 98.5 3.7E-06 8E-11 88.7 17.4 101 362-483 223-324 (412)
204 KOG0649 WD40 repeat protein [G 98.5 4.2E-06 9E-11 83.7 16.2 106 362-482 133-238 (325)
205 TIGR02800 propeller_TolB tol-p 98.5 5.3E-05 1.1E-09 82.7 26.4 89 366-478 303-393 (417)
206 KOG1188 WD40 repeat protein [G 98.5 1.3E-06 2.7E-11 90.8 12.7 103 361-482 90-199 (376)
207 KOG2394 WD40 protein DMR-N9 [G 98.5 1.5E-07 3.3E-12 102.1 6.0 103 377-501 282-384 (636)
208 KOG0303 Actin-binding protein 98.5 1.1E-05 2.4E-10 85.3 19.2 127 59-237 78-214 (472)
209 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.0008 1.7E-08 72.5 32.8 98 363-482 213-333 (352)
210 PRK04792 tolB translocation pr 98.4 0.00011 2.3E-09 82.0 27.2 51 180-230 242-298 (448)
211 PF00400 WD40: WD domain, G-be 98.4 7.2E-07 1.6E-11 64.1 5.7 38 376-414 2-39 (39)
212 PRK02889 tolB translocation pr 98.4 3.2E-05 7E-10 85.6 21.5 92 367-480 266-361 (427)
213 KOG1538 Uncharacterized conser 98.4 4.6E-06 1E-10 92.6 14.3 144 201-477 14-160 (1081)
214 KOG1524 WD40 repeat-containing 98.4 1.2E-05 2.5E-10 87.8 16.8 84 360-479 203-287 (737)
215 KOG2139 WD40 repeat protein [G 98.4 1.8E-05 4E-10 82.9 17.6 97 363-482 216-312 (445)
216 KOG1963 WD40 repeat protein [G 98.4 4.1E-05 9E-10 87.7 21.6 101 364-482 180-284 (792)
217 PRK04792 tolB translocation pr 98.3 7E-05 1.5E-09 83.5 21.9 97 366-484 287-385 (448)
218 TIGR02800 propeller_TolB tol-p 98.3 0.00011 2.3E-09 80.3 22.7 93 365-480 258-355 (417)
219 PRK00178 tolB translocation pr 98.3 0.00016 3.4E-09 79.8 23.5 92 365-479 267-363 (430)
220 KOG1517 Guanine nucleotide bin 98.3 5.7E-05 1.2E-09 88.0 19.8 105 360-481 1274-1383(1387)
221 KOG1517 Guanine nucleotide bin 98.2 8.1E-05 1.8E-09 86.8 19.9 101 361-479 1227-1333(1387)
222 KOG0322 G-protein beta subunit 98.2 9.6E-06 2.1E-10 82.0 10.2 55 360-415 268-322 (323)
223 PRK01029 tolB translocation pr 98.2 0.001 2.2E-08 73.8 27.4 83 379-483 320-405 (428)
224 KOG1587 Cytoplasmic dynein int 98.2 4.6E-05 1E-09 86.3 16.9 56 360-416 459-516 (555)
225 KOG0644 Uncharacterized conser 98.1 1.7E-06 3.7E-11 98.1 4.4 52 360-416 249-300 (1113)
226 PF10282 Lactonase: Lactonase, 98.1 0.0043 9.3E-08 66.7 30.5 104 365-483 166-279 (345)
227 KOG1310 WD40 repeat protein [G 98.1 5.8E-06 1.2E-10 90.3 7.8 84 377-481 42-127 (758)
228 KOG2321 WD40 repeat protein [G 98.1 0.00031 6.6E-09 77.6 20.8 107 361-488 193-311 (703)
229 KOG2919 Guanine nucleotide-bin 98.1 5.4E-05 1.2E-09 78.5 14.2 52 360-415 314-366 (406)
230 PF02239 Cytochrom_D1: Cytochr 98.1 0.00099 2.1E-08 72.5 24.7 178 180-482 16-205 (369)
231 PF02239 Cytochrom_D1: Cytochr 98.1 4.1E-05 8.8E-10 83.3 13.4 105 362-489 13-118 (369)
232 KOG0649 WD40 repeat protein [G 98.0 0.002 4.4E-08 64.8 23.2 62 179-240 135-200 (325)
233 KOG2139 WD40 repeat protein [G 98.0 8.7E-05 1.9E-09 78.0 13.8 79 379-479 190-268 (445)
234 KOG0974 WD-repeat protein WDR6 98.0 7.8E-05 1.7E-09 86.9 14.6 98 362-483 194-292 (967)
235 KOG2321 WD40 repeat protein [G 97.9 0.00016 3.4E-09 79.8 14.7 182 81-415 146-342 (703)
236 PRK04043 tolB translocation pr 97.9 0.011 2.5E-07 65.4 29.8 50 181-230 214-269 (419)
237 KOG1240 Protein kinase contain 97.9 0.0013 2.8E-08 78.2 22.9 110 364-481 1216-1336(1431)
238 KOG0642 Cell-cycle nuclear pro 97.9 9.8E-05 2.1E-09 81.2 12.6 55 361-416 507-561 (577)
239 PRK01029 tolB translocation pr 97.9 0.0012 2.6E-08 73.2 21.5 75 387-480 282-360 (428)
240 KOG2394 WD40 protein DMR-N9 [G 97.9 2.2E-05 4.8E-10 85.7 6.9 102 359-482 306-455 (636)
241 KOG2315 Predicted translation 97.9 0.0011 2.4E-08 73.1 19.6 132 175-416 246-390 (566)
242 KOG1538 Uncharacterized conser 97.8 0.00059 1.3E-08 76.4 17.3 257 83-480 26-294 (1081)
243 KOG1409 Uncharacterized conser 97.8 0.00026 5.7E-09 74.0 13.7 220 178-481 44-272 (404)
244 KOG1310 WD40 repeat protein [G 97.8 5.1E-05 1.1E-09 83.1 8.3 169 194-479 44-231 (758)
245 KOG3881 Uncharacterized conser 97.8 0.0017 3.8E-08 69.0 19.0 54 362-416 266-320 (412)
246 KOG4547 WD40 repeat-containing 97.8 0.0021 4.5E-08 71.4 20.3 97 360-480 119-221 (541)
247 KOG0974 WD-repeat protein WDR6 97.8 0.00012 2.6E-09 85.3 11.1 97 360-479 150-246 (967)
248 KOG1275 PAB-dependent poly(A) 97.8 0.00039 8.3E-09 80.3 14.7 185 179-480 156-343 (1118)
249 PF00400 WD40: WD domain, G-be 97.7 0.00016 3.4E-09 51.8 7.2 36 440-477 4-39 (39)
250 KOG3914 WD repeat protein WDR4 97.7 0.00026 5.5E-09 75.4 11.7 99 363-484 130-228 (390)
251 KOG4227 WD40 repeat protein [G 97.6 0.0046 9.9E-08 65.8 19.3 235 180-480 127-388 (609)
252 KOG4497 Uncharacterized conser 97.6 0.00088 1.9E-08 69.8 13.7 93 362-477 111-238 (447)
253 KOG1523 Actin-related protein 97.6 0.0023 5.1E-08 66.6 16.4 91 382-479 143-236 (361)
254 COG4946 Uncharacterized protei 97.6 0.028 6.1E-07 61.4 25.1 77 181-270 383-464 (668)
255 KOG1524 WD40 repeat-containing 97.6 0.0011 2.3E-08 73.0 14.0 86 364-474 165-250 (737)
256 KOG1272 WD40-repeat-containing 97.6 8.5E-05 1.8E-09 80.1 5.6 230 80-488 181-416 (545)
257 PF04762 IKI3: IKI3 family; I 97.5 0.13 2.7E-06 62.7 32.0 98 364-481 236-335 (928)
258 PRK04043 tolB translocation pr 97.5 0.0078 1.7E-07 66.7 19.8 98 364-484 256-360 (419)
259 KOG1064 RAVE (regulator of V-A 97.5 0.00034 7.3E-09 85.5 9.3 89 363-484 2313-2403(2439)
260 COG4946 Uncharacterized protei 97.5 0.003 6.5E-08 68.7 15.4 119 361-503 377-500 (668)
261 TIGR03300 assembly_YfgL outer 97.4 0.06 1.3E-06 58.2 25.5 90 363-477 287-377 (377)
262 KOG1240 Protein kinase contain 97.4 0.00083 1.8E-08 79.8 11.5 96 370-481 1034-1130(1431)
263 KOG1334 WD40 repeat protein [G 97.4 0.0031 6.8E-08 68.7 15.0 86 386-480 337-425 (559)
264 KOG1523 Actin-related protein 97.4 0.004 8.6E-08 64.9 14.6 85 377-479 92-176 (361)
265 KOG1354 Serine/threonine prote 97.3 0.014 3E-07 61.5 18.1 78 385-480 272-360 (433)
266 KOG4547 WD40 repeat-containing 97.3 0.01 2.2E-07 66.1 18.0 53 364-416 163-220 (541)
267 PF13360 PQQ_2: PQQ-like domai 97.3 0.23 4.9E-06 49.5 27.8 93 362-480 129-231 (238)
268 TIGR02658 TTQ_MADH_Hv methylam 97.3 0.045 9.8E-07 59.2 22.0 59 180-239 27-98 (352)
269 smart00320 WD40 WD40 repeats. 97.3 0.00086 1.9E-08 44.9 5.7 38 376-414 3-40 (40)
270 KOG2315 Predicted translation 97.2 0.14 2.9E-06 57.2 24.8 89 364-479 293-390 (566)
271 KOG4497 Uncharacterized conser 97.2 0.0025 5.3E-08 66.6 10.9 88 362-471 68-155 (447)
272 PLN02919 haloacid dehalogenase 97.1 0.054 1.2E-06 66.8 22.8 73 389-482 807-891 (1057)
273 TIGR03300 assembly_YfgL outer 97.1 0.26 5.5E-06 53.3 25.8 91 363-480 249-339 (377)
274 KOG1912 WD40 repeat protein [G 97.1 0.12 2.6E-06 59.6 23.2 125 70-235 18-152 (1062)
275 PF11768 DUF3312: Protein of u 97.1 0.0041 9E-08 69.5 11.6 90 368-481 239-331 (545)
276 PF03178 CPSF_A: CPSF A subuni 96.9 0.085 1.9E-06 56.0 19.9 95 365-481 107-204 (321)
277 PF07433 DUF1513: Protein of u 96.9 0.35 7.7E-06 51.1 23.4 98 364-481 137-249 (305)
278 PF04762 IKI3: IKI3 family; I 96.8 1.3 2.8E-05 54.1 31.2 75 384-478 303-378 (928)
279 KOG4227 WD40 repeat protein [G 96.8 0.02 4.3E-07 61.1 13.3 102 360-481 73-181 (609)
280 KOG1275 PAB-dependent poly(A) 96.7 0.035 7.5E-07 64.8 15.3 102 80-231 147-259 (1118)
281 COG2706 3-carboxymuconate cycl 96.6 0.94 2E-05 48.3 23.8 33 386-418 291-323 (346)
282 KOG1912 WD40 repeat protein [G 96.4 0.052 1.1E-06 62.4 14.2 103 360-481 442-553 (1062)
283 PF03178 CPSF_A: CPSF A subuni 96.4 1.7 3.7E-05 46.0 26.3 50 180-229 62-118 (321)
284 KOG0280 Uncharacterized conser 96.0 0.049 1.1E-06 56.5 10.2 100 362-481 140-243 (339)
285 COG5354 Uncharacterized protei 95.9 1.2 2.5E-05 49.6 20.6 109 81-225 44-159 (561)
286 KOG4532 WD40-like repeat conta 95.8 0.66 1.4E-05 47.9 17.3 101 363-484 136-238 (344)
287 KOG4190 Uncharacterized conser 95.6 0.032 6.9E-07 61.7 7.6 93 363-478 849-947 (1034)
288 KOG2314 Translation initiation 95.6 0.16 3.5E-06 56.6 12.9 84 363-469 280-366 (698)
289 KOG2695 WD40 repeat protein [G 95.5 0.076 1.6E-06 56.2 9.7 60 180-239 274-345 (425)
290 COG5170 CDC55 Serine/threonine 95.4 0.32 7E-06 50.9 13.7 84 381-482 276-370 (460)
291 KOG4190 Uncharacterized conser 95.3 0.016 3.5E-07 64.0 4.2 85 377-478 727-811 (1034)
292 KOG4714 Nucleoporin [Nuclear s 95.2 0.044 9.6E-07 56.0 6.6 113 360-477 197-316 (319)
293 PRK11138 outer membrane biogen 95.2 6 0.00013 43.2 26.0 55 180-234 215-282 (394)
294 KOG2314 Translation initiation 95.0 0.11 2.3E-06 58.0 9.2 96 367-483 233-338 (698)
295 smart00320 WD40 WD40 repeats. 94.9 0.092 2E-06 34.5 5.6 28 450-477 13-40 (40)
296 COG0823 TolB Periplasmic compo 94.9 1.8 3.9E-05 48.2 18.7 60 391-470 287-346 (425)
297 KOG1334 WD40 repeat protein [G 94.8 0.057 1.2E-06 59.3 6.4 113 378-511 135-252 (559)
298 PF13360 PQQ_2: PQQ-like domai 94.7 5 0.00011 39.7 24.9 57 180-236 86-150 (238)
299 KOG4532 WD40-like repeat conta 94.6 4.7 0.0001 41.9 19.2 56 361-416 221-282 (344)
300 PF08450 SGL: SMP-30/Gluconola 94.6 5.8 0.00013 40.1 25.7 99 365-479 115-213 (246)
301 KOG1645 RING-finger-containing 94.3 0.11 2.4E-06 55.9 7.0 96 367-485 175-272 (463)
302 PF12894 Apc4_WD40: Anaphase-p 94.3 0.13 2.9E-06 39.1 5.6 31 449-479 11-41 (47)
303 KOG1064 RAVE (regulator of V-A 94.3 0.17 3.7E-06 63.1 9.4 119 360-483 2225-2370(2439)
304 KOG2041 WD40 repeat protein [G 94.2 0.12 2.7E-06 59.0 7.5 99 360-478 31-144 (1189)
305 KOG3621 WD40 repeat-containing 94.2 0.14 3.1E-06 58.5 8.1 102 361-480 51-155 (726)
306 PF15492 Nbas_N: Neuroblastoma 94.2 5.9 0.00013 41.3 19.0 115 363-481 117-261 (282)
307 PF08450 SGL: SMP-30/Gluconola 93.8 0.96 2.1E-05 45.8 12.7 98 365-483 60-168 (246)
308 COG0823 TolB Periplasmic compo 93.7 1.9 4E-05 48.1 15.6 78 180-269 218-301 (425)
309 PF15492 Nbas_N: Neuroblastoma 93.7 0.45 9.8E-06 49.3 9.9 72 391-480 3-74 (282)
310 KOG4640 Anaphase-promoting com 93.6 0.29 6.4E-06 55.5 9.1 78 386-486 21-99 (665)
311 KOG0309 Conserved WD40 repeat- 93.4 0.53 1.2E-05 54.3 10.8 101 360-482 132-235 (1081)
312 PF11768 DUF3312: Protein of u 93.2 0.17 3.7E-06 56.9 6.5 55 360-417 276-330 (545)
313 KOG4640 Anaphase-promoting com 93.2 0.29 6.3E-06 55.5 8.2 55 360-416 37-92 (665)
314 KOG0280 Uncharacterized conser 93.0 0.36 7.9E-06 50.2 7.9 56 360-416 183-241 (339)
315 KOG2695 WD40 repeat protein [G 92.8 0.24 5.2E-06 52.6 6.4 108 361-488 230-338 (425)
316 COG3386 Gluconolactonase [Carb 92.8 11 0.00024 40.2 19.1 53 363-416 141-193 (307)
317 PF12894 Apc4_WD40: Anaphase-p 92.7 0.3 6.4E-06 37.2 5.2 31 385-416 11-41 (47)
318 KOG1354 Serine/threonine prote 92.7 0.47 1E-05 50.4 8.4 84 385-484 25-121 (433)
319 KOG3914 WD repeat protein WDR4 92.6 1.9 4.1E-05 46.7 12.9 54 361-416 169-223 (390)
320 COG5354 Uncharacterized protei 92.3 0.25 5.4E-06 54.7 6.1 87 369-480 16-117 (561)
321 PF00780 CNH: CNH domain; Int 92.3 15 0.00032 37.6 23.4 40 81-122 7-46 (275)
322 PF07433 DUF1513: Protein of u 92.2 8 0.00017 41.1 17.0 42 363-404 75-117 (305)
323 PRK11138 outer membrane biogen 92.0 4.2 9.1E-05 44.4 15.4 54 179-233 265-319 (394)
324 KOG0309 Conserved WD40 repeat- 91.8 0.9 1.9E-05 52.5 9.8 57 180-236 180-244 (1081)
325 PF00780 CNH: CNH domain; Int 91.6 5.7 0.00012 40.7 15.1 48 189-236 216-265 (275)
326 PF14783 BBS2_Mid: Ciliary BBS 91.5 2 4.3E-05 38.8 9.9 65 388-478 2-70 (111)
327 cd00216 PQQ_DH Dehydrogenases 91.3 24 0.00052 39.9 21.0 57 180-236 71-138 (488)
328 PLN02919 haloacid dehalogenase 91.3 3 6.4E-05 51.8 14.6 110 362-480 702-834 (1057)
329 KOG2066 Vacuolar assembly/sort 91.1 6.7 0.00014 46.1 16.0 48 179-226 92-146 (846)
330 PRK02888 nitrous-oxide reducta 90.8 2.7 5.7E-05 48.7 12.4 118 361-482 211-354 (635)
331 PF06433 Me-amine-dh_H: Methyl 90.8 0.71 1.5E-05 49.5 7.4 57 180-236 269-330 (342)
332 KOG2066 Vacuolar assembly/sort 90.5 1 2.2E-05 52.5 8.8 93 361-485 55-152 (846)
333 PF00930 DPPIV_N: Dipeptidyl p 89.9 0.9 2E-05 49.0 7.6 105 363-483 21-135 (353)
334 PF04841 Vps16_N: Vps16, N-ter 89.6 35 0.00075 37.8 19.9 47 179-226 60-109 (410)
335 KOG1920 IkappaB kinase complex 89.5 16 0.00034 45.0 17.8 97 365-481 222-324 (1265)
336 KOG3617 WD40 and TPR repeat-co 88.5 1 2.2E-05 52.8 6.9 98 360-483 36-135 (1416)
337 PF10168 Nup88: Nuclear pore c 87.9 36 0.00078 40.6 19.4 87 387-480 86-180 (717)
338 KOG0882 Cyclophilin-related pe 87.6 2.2 4.7E-05 47.0 8.3 112 362-481 119-233 (558)
339 PRK13616 lipoprotein LpqB; Pro 87.2 4.5 9.7E-05 47.0 11.3 96 364-480 378-477 (591)
340 KOG2079 Vacuolar assembly/sort 86.8 1.8 3.8E-05 52.2 7.7 53 363-416 107-160 (1206)
341 KOG2395 Protein involved in va 86.8 32 0.0007 39.0 16.8 54 360-415 446-499 (644)
342 KOG1897 Damage-specific DNA bi 86.2 91 0.002 38.1 25.2 78 386-480 715-816 (1096)
343 PF04053 Coatomer_WDAD: Coatom 86.1 56 0.0012 36.7 18.8 57 397-479 117-173 (443)
344 KOG1897 Damage-specific DNA bi 85.9 93 0.002 38.0 24.1 98 363-480 846-943 (1096)
345 COG3490 Uncharacterized protei 83.7 12 0.00026 39.4 11.1 119 188-404 56-180 (366)
346 PF14783 BBS2_Mid: Ciliary BBS 83.3 31 0.00068 31.2 12.3 86 360-474 20-109 (111)
347 PF08553 VID27: VID27 cytoplas 82.9 21 0.00046 42.8 14.3 55 360-416 593-647 (794)
348 KOG2079 Vacuolar assembly/sort 82.8 1.8 4E-05 52.1 5.4 76 395-492 97-173 (1206)
349 PF14781 BBS2_N: Ciliary BBSom 82.7 7.4 0.00016 36.4 8.3 54 180-233 20-88 (136)
350 KOG4714 Nucleoporin [Nuclear s 82.5 1.4 3.1E-05 45.3 3.8 94 365-480 159-255 (319)
351 KOG3617 WD40 and TPR repeat-co 81.9 2.9 6.4E-05 49.2 6.5 55 361-416 77-131 (1416)
352 COG3391 Uncharacterized conser 81.3 23 0.00051 38.7 13.2 95 363-480 94-191 (381)
353 PF08596 Lgl_C: Lethal giant l 81.1 10 0.00022 41.9 10.2 85 376-481 77-175 (395)
354 KOG1832 HIV-1 Vpr-binding prot 80.9 0.86 1.9E-05 53.6 1.9 100 359-482 1117-1217(1516)
355 PF14583 Pectate_lyase22: Olig 80.9 95 0.0021 34.2 19.4 41 178-218 166-209 (386)
356 PF10313 DUF2415: Uncharacteri 79.8 4.6 9.9E-05 30.3 4.7 29 387-416 2-33 (43)
357 PF07676 PD40: WD40-like Beta 79.7 4 8.6E-05 29.0 4.5 26 451-476 10-38 (39)
358 COG3386 Gluconolactonase [Carb 79.4 14 0.00031 39.3 10.4 77 387-484 112-198 (307)
359 PRK13616 lipoprotein LpqB; Pro 79.2 11 0.00025 43.8 10.3 99 364-484 429-530 (591)
360 PF10313 DUF2415: Uncharacteri 78.9 6.2 0.00013 29.5 5.2 29 452-480 3-34 (43)
361 PF06433 Me-amine-dh_H: Methyl 78.7 1E+02 0.0022 33.4 20.1 39 439-480 281-321 (342)
362 COG5170 CDC55 Serine/threonine 78.1 4.9 0.00011 42.4 6.2 77 386-481 27-119 (460)
363 KOG1645 RING-finger-containing 77.7 26 0.00057 38.3 11.6 47 180-226 411-461 (463)
364 PF02897 Peptidase_S9_N: Proly 77.4 17 0.00038 39.7 10.8 101 361-481 146-260 (414)
365 PRK02888 nitrous-oxide reducta 77.2 24 0.00052 41.1 11.9 106 364-480 295-405 (635)
366 PF08553 VID27: VID27 cytoplas 76.8 7.8 0.00017 46.3 8.1 92 364-479 551-647 (794)
367 KOG2114 Vacuolar assembly/sort 76.6 11 0.00023 44.8 8.9 106 361-480 41-156 (933)
368 PF07676 PD40: WD40-like Beta 74.5 9.2 0.0002 27.1 5.1 31 383-413 6-38 (39)
369 KOG2444 WD40 repeat protein [G 74.0 7.5 0.00016 39.5 6.0 102 361-484 76-182 (238)
370 KOG2041 WD40 repeat protein [G 73.2 3.6 7.9E-05 47.6 4.0 96 360-479 88-186 (1189)
371 PF14655 RAB3GAP2_N: Rab3 GTPa 72.6 24 0.00052 39.3 10.1 39 377-416 299-337 (415)
372 KOG1409 Uncharacterized conser 72.6 21 0.00045 38.4 9.1 115 372-492 101-241 (404)
373 PF08596 Lgl_C: Lethal giant l 72.1 1.1E+02 0.0024 33.8 15.3 89 387-479 3-115 (395)
374 KOG2395 Protein involved in va 69.7 24 0.00052 40.0 9.2 103 360-478 351-458 (644)
375 cd00216 PQQ_DH Dehydrogenases 69.4 1.3E+02 0.0028 34.0 15.6 40 361-401 412-453 (488)
376 PF05694 SBP56: 56kDa selenium 69.4 58 0.0013 36.4 12.0 105 362-481 219-344 (461)
377 PF02897 Peptidase_S9_N: Proly 68.5 29 0.00063 37.9 9.9 63 387-471 125-191 (414)
378 COG3391 Uncharacterized conser 67.9 85 0.0018 34.3 13.2 94 363-480 138-240 (381)
379 KOG1832 HIV-1 Vpr-binding prot 67.4 7.3 0.00016 46.4 4.8 88 376-485 1092-1181(1516)
380 PF12657 TFIIIC_delta: Transcr 65.2 58 0.0013 31.4 10.1 30 451-480 87-122 (173)
381 KOG2114 Vacuolar assembly/sort 63.7 79 0.0017 38.0 12.1 99 366-482 93-204 (933)
382 PF06977 SdiA-regulated: SdiA- 63.4 91 0.002 32.2 11.6 81 380-482 16-97 (248)
383 PF08728 CRT10: CRT10; InterP 62.3 3.4E+02 0.0073 32.5 17.9 75 386-479 164-246 (717)
384 KOG1920 IkappaB kinase complex 61.4 37 0.00081 42.0 9.3 67 386-475 69-135 (1265)
385 smart00036 CNH Domain found in 60.4 1.3E+02 0.0029 31.7 12.7 43 194-236 238-280 (302)
386 PF02333 Phytase: Phytase; In 59.4 75 0.0016 35.0 10.6 31 585-615 217-247 (381)
387 PF14870 PSII_BNR: Photosynthe 59.0 61 0.0013 34.5 9.7 69 386-477 145-213 (302)
388 PF12234 Rav1p_C: RAVE protein 57.6 2.2E+02 0.0047 33.6 14.5 64 59-124 11-85 (631)
389 KOG4460 Nuclear pore complex, 57.4 1.6E+02 0.0035 33.7 12.6 88 387-481 105-200 (741)
390 PF10647 Gmad1: Lipoprotein Lp 57.3 1.3E+02 0.0029 30.8 11.7 78 387-482 67-147 (253)
391 KOG3621 WD40 repeat-containing 55.8 21 0.00045 41.7 5.7 80 384-485 32-111 (726)
392 PF05787 DUF839: Bacterial pro 55.8 26 0.00056 40.2 6.7 29 439-467 491-519 (524)
393 PF00930 DPPIV_N: Dipeptidyl p 55.7 2.9E+02 0.0062 29.6 20.2 51 179-229 22-74 (353)
394 PF05096 Glu_cyclase_2: Glutam 55.6 56 0.0012 34.1 8.4 57 180-236 110-167 (264)
395 PF03022 MRJP: Major royal jel 54.1 2.9E+02 0.0062 29.1 17.9 57 180-236 34-106 (287)
396 PF14727 PHTB1_N: PTHB1 N-term 53.8 3.6E+02 0.0078 30.2 24.9 59 178-236 95-173 (418)
397 TIGR03074 PQQ_membr_DH membran 53.4 4.9E+02 0.011 31.6 20.2 54 362-416 411-477 (764)
398 PF14781 BBS2_N: Ciliary BBSom 53.1 1.9E+02 0.0041 27.2 10.6 57 179-235 72-134 (136)
399 PF12234 Rav1p_C: RAVE protein 52.8 1.5E+02 0.0032 34.9 12.1 81 379-480 23-105 (631)
400 PF03022 MRJP: Major royal jel 52.3 3E+02 0.0066 28.9 14.2 104 364-480 33-160 (287)
401 PF04053 Coatomer_WDAD: Coatom 51.9 35 0.00077 38.3 6.8 49 363-415 124-172 (443)
402 PF04841 Vps16_N: Vps16, N-ter 51.6 1E+02 0.0022 34.1 10.4 28 450-478 81-108 (410)
403 PF01731 Arylesterase: Arylest 51.1 74 0.0016 27.4 7.2 36 443-480 49-85 (86)
404 PF01731 Arylesterase: Arylest 48.3 81 0.0018 27.2 7.0 50 364-416 35-84 (86)
405 PF07569 Hira: TUP1-like enhan 48.1 91 0.002 31.5 8.5 77 387-480 14-96 (219)
406 KOG1900 Nuclear pore complex, 47.0 1.7E+02 0.0036 37.0 11.7 35 383-418 240-274 (1311)
407 TIGR03032 conserved hypothetic 46.9 2E+02 0.0043 31.0 10.9 31 179-209 281-314 (335)
408 KOG1008 Uncharacterized conser 44.3 8.3 0.00018 44.4 0.4 93 362-478 126-224 (783)
409 PF05096 Glu_cyclase_2: Glutam 43.7 1.3E+02 0.0028 31.5 8.8 56 179-234 67-126 (264)
410 PF07569 Hira: TUP1-like enhan 43.5 41 0.00088 34.0 5.2 38 194-231 7-45 (219)
411 TIGR02276 beta_rpt_yvtn 40-res 41.8 1.2E+02 0.0026 21.2 6.5 22 395-416 1-22 (42)
412 COG5422 ROM1 RhoGEF, Guanine n 41.4 1.9E+02 0.004 35.2 10.4 30 81-111 1018-1047(1175)
413 PF05694 SBP56: 56kDa selenium 40.8 66 0.0014 36.0 6.5 46 179-224 221-275 (461)
414 PF10214 Rrn6: RNA polymerase 39.8 1.4E+02 0.0031 35.9 9.8 92 377-482 134-235 (765)
415 PF12341 DUF3639: Protein of u 39.6 59 0.0013 21.9 3.7 25 451-477 3-27 (27)
416 COG3204 Uncharacterized protei 39.5 5.1E+02 0.011 27.7 13.7 82 383-485 83-164 (316)
417 COG3211 PhoX Predicted phospha 39.3 75 0.0016 36.6 6.8 65 388-467 502-571 (616)
418 PF10647 Gmad1: Lipoprotein Lp 39.1 1.5E+02 0.0033 30.4 8.7 67 387-477 25-93 (253)
419 TIGR02171 Fb_sc_TIGR02171 Fibr 38.9 1.7E+02 0.0036 35.8 9.8 161 389-601 319-544 (912)
420 TIGR03075 PQQ_enz_alc_DH PQQ-d 36.9 99 0.0022 35.5 7.6 58 179-236 440-500 (527)
421 KOG1916 Nuclear protein, conta 36.8 11 0.00025 44.9 0.0 53 362-416 202-265 (1283)
422 PF13570 PQQ_3: PQQ-like domai 35.3 84 0.0018 22.3 4.4 22 206-227 18-40 (40)
423 PF07250 Glyoxal_oxid_N: Glyox 35.2 1.3E+02 0.0028 31.1 7.3 49 367-415 48-98 (243)
424 PF03088 Str_synth: Strictosid 35.0 1E+02 0.0022 26.8 5.6 53 360-413 32-85 (89)
425 smart00036 CNH Domain found in 34.7 3.5E+02 0.0077 28.5 10.9 39 82-122 14-53 (302)
426 PF01011 PQQ: PQQ enzyme repea 34.0 58 0.0013 23.1 3.3 25 213-237 5-29 (38)
427 smart00564 PQQ beta-propeller 33.9 95 0.0021 20.6 4.3 24 211-234 9-32 (33)
428 COG3823 Glutamine cyclotransfe 31.7 5.5E+02 0.012 26.3 10.7 55 180-234 111-166 (262)
429 PF03088 Str_synth: Strictosid 31.0 2.4E+02 0.0052 24.4 7.2 26 440-467 49-74 (89)
430 KOG2444 WD40 repeat protein [G 29.3 62 0.0013 33.1 3.7 56 361-417 120-178 (238)
431 TIGR02604 Piru_Ver_Nterm putat 29.3 6.4E+02 0.014 27.2 12.0 111 362-490 43-181 (367)
432 COG4247 Phy 3-phytase (myo-ino 28.9 7.1E+02 0.015 26.2 11.3 26 587-612 216-241 (364)
433 PF10214 Rrn6: RNA polymerase 28.8 1.1E+03 0.024 28.4 17.2 72 387-481 205-278 (765)
434 PF15390 DUF4613: Domain of un 28.7 1E+03 0.022 28.0 29.6 62 390-469 343-404 (671)
435 TIGR02608 delta_60_rpt delta-6 28.2 1.5E+02 0.0032 23.4 4.9 32 452-483 3-39 (55)
436 COG3490 Uncharacterized protei 26.9 3.1E+02 0.0066 29.3 8.3 62 380-468 114-180 (366)
437 PF01436 NHL: NHL repeat; Int 26.8 1.3E+02 0.0027 19.9 3.8 25 452-476 4-28 (28)
438 PRK10115 protease 2; Provision 26.8 3.6E+02 0.0077 32.1 10.1 100 360-479 148-255 (686)
439 PF12768 Rax2: Cortical protei 26.2 5.7E+02 0.012 26.9 10.5 53 364-416 15-72 (281)
440 PRK13684 Ycf48-like protein; P 25.7 3.2E+02 0.0069 29.3 8.8 66 386-474 173-238 (334)
441 PF14655 RAB3GAP2_N: Rab3 GTPa 25.2 7.2E+02 0.016 27.8 11.5 57 180-236 329-408 (415)
442 PF14761 HPS3_N: Hermansky-Pud 25.2 2.6E+02 0.0057 28.3 7.3 43 407-469 37-79 (215)
443 KOG1916 Nuclear protein, conta 25.2 31 0.00068 41.4 1.0 100 363-485 151-271 (1283)
444 PF10584 Proteasome_A_N: Prote 25.1 9.2 0.0002 24.8 -1.9 11 591-601 6-16 (23)
445 PF14269 Arylsulfotran_2: Aryl 24.8 5.3E+02 0.012 27.3 10.1 71 388-479 146-220 (299)
446 KOG4649 PQQ (pyrrolo-quinoline 23.6 7E+02 0.015 26.4 10.1 99 361-481 69-167 (354)
447 KOG2280 Vacuolar assembly/sort 22.9 1.4E+03 0.03 27.6 13.7 48 366-416 65-112 (829)
448 KOG1898 Splicing factor 3b, su 22.7 1E+03 0.022 29.9 12.5 50 180-229 954-1009(1205)
449 KOG1008 Uncharacterized conser 22.2 32 0.00069 39.9 0.3 104 361-480 76-185 (783)
450 KOG2377 Uncharacterized conser 21.7 2E+02 0.0043 32.5 6.1 77 385-481 66-142 (657)
451 PF06977 SdiA-regulated: SdiA- 21.4 9.1E+02 0.02 24.9 12.6 105 361-480 40-148 (248)
452 PRK13613 lipoprotein LpqB; Pro 20.8 4E+02 0.0086 31.3 8.8 80 387-482 456-540 (599)
453 COG5167 VID27 Protein involved 20.5 5.8E+02 0.013 29.4 9.4 98 359-477 484-589 (776)
454 PF11715 Nup160: Nucleoporin N 20.1 1.8E+02 0.0039 33.2 5.8 32 452-483 217-252 (547)
No 1
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.4e-50 Score=434.40 Aligned_cols=500 Identities=37% Similarity=0.463 Sum_probs=395.6
Q ss_pred cCchhHhhhccchhcchhhhhhhhhhhhhccCCCCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCce
Q 046828 25 IPNSLKFISSCIKTASSGVRSAGASVAASISGDSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVS 104 (627)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ 104 (627)
+|++||+||.|+|+.+|+++++.+|++++.+.+-++++|||+|++||+- +...++||+++|.+||||||+++..++.
T Consensus 1 ~p~s~~~vs~c~k~~ssg~~~~~~s~~~~~ss~~~e~~dqvlw~~fD~~---~~~~~~Vlll~~~~gfqv~d~~Dsp~vh 77 (788)
T KOG2109|consen 1 MPPSANSVSGCKKKNSSGHQRPQQSHQQTQSSPLPEEEDQVLWIKFDPK---PEVLEEVLLLNREEGFQVVDETDSPTVH 77 (788)
T ss_pred CCcccchhccchhhcccccccHHHHHHhhcCCCChhhhccccccccCCc---hhHHHHHHHHhhccCceEEeeccCCccc
Confidence 5899999999999999999999999999999999999999999999953 3456999999999999999999999999
Q ss_pred EEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEE
Q 046828 105 ELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRF 184 (627)
Q Consensus 105 ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~l 184 (627)
+.++.+||++.|.+|+++|..+...++|+..+|++|+|. +..+++.+. .++.|+..+. .+.-..+
T Consensus 78 ~~vs~~dd~~~f~sm~~~pl~sg~~~gf~ss~avpavv~---~t~S~p~I~-~S~~Gse~d~-----------t~an~~v 142 (788)
T KOG2109|consen 78 KEVSISDDLLDFSSMDKSPLSSGPDSGFESSDAVPAVVR---TTTSPPTIP-PSQTGSEQDS-----------TQANEMV 142 (788)
T ss_pred eeeeecCCcceecccCCCCccCCCCCccccCCceeeecc---cccCCCcCC-CCCCcceecc-----------cccccce
Confidence 999999999999999999999887788999999999875 222333222 1323332211 2344778
Q ss_pred EECCCCceEEEEecCCeEEEEEecCcEEEEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceE
Q 046828 185 YSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWL 264 (627)
Q Consensus 185 wdl~t~~~V~tL~f~s~V~sV~~s~~~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~L 264 (627)
+|+++..++|+|+|+ +|+|||+.|++..+.+++++.|.+ +++++|+++++++||+
T Consensus 143 ~dl~S~~yah~l~fR-------------------qi~CfDa~tle~d~~~~~n~~p~l------~l~VGYGplaVg~rWa 197 (788)
T KOG2109|consen 143 VDLMSLDYAHALPFR-------------------QIHCFDAPTLEIDSMNTINTKPRL------LLSVGYGPLAVGRRWA 197 (788)
T ss_pred eccccccchhccccc-------------------ccccccCcccCCchhhcccccccc------ceeeccccccceeeee
Confidence 999999999999997 899999999999999998887732 3567899999999999
Q ss_pred EEcCCCCCcCCCCccCCCCCCC-CCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCc
Q 046828 265 AYASNNPLLPNTGRLSPQSLTP-PSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPV 343 (627)
Q Consensus 265 Ay~~~~~~v~~~gr~~~q~~t~-~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~ 343 (627)
||+...+.. ++.+.+++ +.+++.+++.++..++.||++..|+++.+|.++||.||+.+++||.+..+++..+..
T Consensus 198 aya~~~a~~-----vss~~Vt~~~~VspttSs~~~~~va~~A~essk~lA~gl~nlgDkGy~~isglc~g~~~~g~gpgl 272 (788)
T KOG2109|consen 198 AYAQTLANQ-----VSSHLVTMGMSVSPTTSSQITAEVAEWAQESSKELAGGLVNLGDKGYVLISGLCRGSYQIGTGPGL 272 (788)
T ss_pred eeccCcchh-----hhhccccccccccCCCCCchhHHHHHhhhhhhHHHhhhhcccccchHHHHHHHhhcccCCCCCCCC
Confidence 999865431 22355666 778888888888899999999999999999999999999999999998888755443
Q ss_pred cCCCccccCcccccccCCCCCCe--EEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCC
Q 046828 344 SSNSSWKAGRNASHSSDTDIAGM--VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSK 421 (627)
Q Consensus 344 s~~~~~~~g~~~~~~~~~~~dG~--V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~ 421 (627)
........|+...+.+.. --|+ +.+-|+.+...+.+|++|.+||++|+|+++|.+|++++..|+.|++|+++|....
T Consensus 273 gg~~~~~vGrvg~vsaes-V~g~~~vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t 351 (788)
T KOG2109|consen 273 GGFEEVLVGRVGPVSAES-VLGNNLVIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCT 351 (788)
T ss_pred CCcCceecccccccccee-ecccceEEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEecccccc
Confidence 333322334433222222 2344 8889999999999999999999999999999999999999999999999976543
Q ss_pred CCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCC
Q 046828 422 GRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSP 501 (627)
Q Consensus 422 ~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p 501 (627)
.+.+.++..| + .||++.+.|++|+|+.+.+|++++|.+|+= |.+.+
T Consensus 352 --~~~~~qs~~~-----s----~ra~t~aviqdicfs~~s~~r~~gsc~Ge~-----------------------P~ls~ 397 (788)
T KOG2109|consen 352 --VNVSDQSLVV-----S----PRANTAAVIQDICFSEVSTIRTAGSCEGEP-----------------------PALSL 397 (788)
T ss_pred --cccccccccc-----c----hhcchHHHHHHHhhhhhcceEeecccCCCC-----------------------ccccc
Confidence 2221121211 1 589999999999999999999999966552 34556
Q ss_pred CccCCCCCCCccccccCCCCCCCCCCeeeeeeeeeecCCCCccccccccccccCCccCCCccceeeecccccccCCCccc
Q 046828 502 VLSVPWWSSPSFMINQPSFSLPPPLPVTLSVVSRIKNNNSGWLNTVSSTASSTAGKTSIPSGALAAVFHSSLHQDLQPLD 581 (627)
Q Consensus 502 ~~~~~~~~~~~~s~~q~~~~~~~p~~~~l~~~~~i~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~ 581 (627)
...+|+|..+..+...+.+ +++...+|...++++-.+. | .+++-.+++-.|.++-+.+|+++......
T Consensus 398 t~~lp~~A~~Sl~~gl~s~--g~~aa~gla~~sag~~a~s----~---~asSv~s~s~~pd~ks~gv~~gsv~k~~q--- 465 (788)
T KOG2109|consen 398 TCQLPAYADTSLDLGLQSS--GGLAAEGLATSSAGYTAHS----Y---TASSVFSRSVKPDSKSVGVGSGSVTKANQ--- 465 (788)
T ss_pred ccccchhhchhhhcccccc--Ccccceeeeeccccccccc----c---ccceeeccccccchhhccceeeeccccCc---
Confidence 6788999988888777776 4556778888888876544 1 23333445556777888888876554321
Q ss_pred ccccCcceEEEEcCCC-cEEEEEeeccCCCCcccc-ccce
Q 046828 582 SKVNDLEHVLVYTPSG-HVVQYKLLSSIGGESSEL-GKGL 619 (627)
Q Consensus 582 ~~~~~~~~l~v~~~~G-~l~~y~l~p~~~~~~~~~-~~~~ 619 (627)
+.+..+..|||+.|+| +++||.|.+..+|.--|. ..+.
T Consensus 466 ~~~~~l~~llv~~psGd~vvqh~vahs~~gv~~Ef~~~~~ 505 (788)
T KOG2109|consen 466 GVITVLNLLLVGEPSGDGVVQHYVAHSDPGVYIEFSPDQR 505 (788)
T ss_pred cchhhhhheeeecCCCCceeEEEeeccCccceeeeccccc
Confidence 4457899999999999 999999999999988776 4443
No 2
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=1.2e-46 Score=385.47 Aligned_cols=324 Identities=27% Similarity=0.467 Sum_probs=273.1
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
+.+..+.+.+|++. ..+|.+|..+|+++|.+++.+ +..+...+.+.+++||... .||
T Consensus 3 ~~~~ti~~~~~Nqd-------~~~lsvGs~~Gyk~~~~~~~~---k~~~~~~~~~~IvEmLFSS-------------SLv 59 (391)
T KOG2110|consen 3 GKKPTINFIGFNQD-------STLLSVGSKDGYKIFSCSPFE---KCFSKDTEGVSIVEMLFSS-------------SLV 59 (391)
T ss_pred CCCcceeeeeeccc-------eeEEEccCCCceeEEecCchH---HhhcccCCCeEEEEeeccc-------------cee
Confidence 45677888889873 679999999999999999866 3566666788999999764 688
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecCcEEEEEeCCe
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLAAQ 219 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~~~LaV~~~~~ 219 (627)
|+|.- . -|+++++++.|.+..|+++.|+++|.+|++|+++|+|.+.++
T Consensus 60 aiV~~-------------------------~-------qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~ 107 (391)
T KOG2110|consen 60 AIVSI-------------------------K-------QPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEES 107 (391)
T ss_pred EEEec-------------------------C-------CCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEccc
Confidence 88751 1 138899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCceeEEEEcC-CCCCCCCCCCcCcccccceeeEcC----ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCC
Q 046828 220 IYCFDALTLESKFSVLTY-PVPHFGGQGTSGVNIGYGPMAVGP----RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTS 294 (627)
Q Consensus 220 I~i~D~~t~e~~~tl~~~-p~~~~~~~g~~~~~~~~~~iAl~~----r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s 294 (627)
|||||+.+|+.+++|.+. |+| .+.+|+++ .+|||+++
T Consensus 108 IyIydI~~MklLhTI~t~~~n~-------------~gl~AlS~n~~n~ylAyp~s------------------------- 149 (391)
T KOG2110|consen 108 IYIYDIKDMKLLHTIETTPPNP-------------KGLCALSPNNANCYLAYPGS------------------------- 149 (391)
T ss_pred EEEEecccceeehhhhccCCCc-------------cceEeeccCCCCceEEecCC-------------------------
Confidence 999999999999999986 566 23344443 48888752
Q ss_pred CCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 295 PSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 295 ~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
...|.|.|||+.+
T Consensus 150 -------------------------------------------------------------------~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 150 -------------------------------------------------------------------TTSGDVVLFDTIN 162 (391)
T ss_pred -------------------------------------------------------------------CCCceEEEEEccc
Confidence 1257899999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEE
Q 046828 375 RSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQD 454 (627)
Q Consensus 375 ~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~s 454 (627)
.+++..|.+|.++|.||+|+++|++|||||++||+||||.+. +| .++|+||||...+.|++
T Consensus 163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~-------~G------------~kl~eFRRG~~~~~IyS 223 (391)
T KOG2110|consen 163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP-------EG------------QKLYEFRRGTYPVSIYS 223 (391)
T ss_pred ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcC-------Cc------------cEeeeeeCCceeeEEEE
Confidence 999999999999999999999999999999999999999994 34 38999999999888999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCCCccCCCCCCCccccccCCCCCCCCCCeeeeeee
Q 046828 455 ICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPVLSVPWWSSPSFMINQPSFSLPPPLPVTLSVVS 534 (627)
Q Consensus 455 IaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~~~~~~~~~~~~s~~q~~~~~~~p~~~~l~~~~ 534 (627)
|+|+||+++|+++|+.+|||||.++.... .|. ..|.
T Consensus 224 L~Fs~ds~~L~~sS~TeTVHiFKL~~~~~----------------~~~------------------~~p~---------- 259 (391)
T KOG2110|consen 224 LSFSPDSQFLAASSNTETVHIFKLEKVSN----------------NPP------------------ESPT---------- 259 (391)
T ss_pred EEECCCCCeEEEecCCCeEEEEEeccccc----------------CCC------------------CCCC----------
Confidence 99999999999999999999999985320 000 0011
Q ss_pred eeecCCCCccccccccccccCCccCCCccceeeecccccccC--------CCccc--ccccCcceEEEEcCCCcEEEEEe
Q 046828 535 RIKNNNSGWLNTVSSTASSTAGKTSIPSGALAAVFHSSLHQD--------LQPLD--SKVNDLEHVLVYTPSGHVVQYKL 604 (627)
Q Consensus 535 ~i~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--------~~~~~--~~~~~~~~l~v~~~~G~l~~y~l 604 (627)
...+|.+.+++++. +|+|+ +|+.++++.|.|. .++.| ..+++.++++|++.|||+|.|+|
T Consensus 260 ----~~~~~~~~~sk~~~-----sylps-~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l 329 (391)
T KOG2110|consen 260 ----AGTSWFGKVSKAAT-----SYLPS-QVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRL 329 (391)
T ss_pred ----CCCcccchhhhhhh-----hhcch-hhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEc
Confidence 23468899998875 38998 9999999999883 44666 46799999999999999999999
Q ss_pred eccCCCCccccc
Q 046828 605 LSSIGGESSELG 616 (627)
Q Consensus 605 ~p~~~~~~~~~~ 616 (627)
.|++||||..+.
T Consensus 330 ~~~~gGec~lik 341 (391)
T KOG2110|consen 330 PPKEGGECALIK 341 (391)
T ss_pred CCCCCceeEEEE
Confidence 999999999665
No 3
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=1e-42 Score=351.09 Aligned_cols=323 Identities=25% Similarity=0.333 Sum_probs=256.7
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEE
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLV 141 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlav 141 (627)
.-+.+-++|++. ..++++|.+.||+||++++.++-.+.-. +++....++|+... ++||+
T Consensus 5 ~~~~lsvs~NQD-------~ScFava~~~Gfriyn~~P~ke~~~r~~-~~~G~~~veMLfR~-------------N~laL 63 (346)
T KOG2111|consen 5 EPKTLSVSFNQD-------HSCFAVATDTGFRIYNCDPFKESASRQF-IDGGFKIVEMLFRS-------------NYLAL 63 (346)
T ss_pred cCceeEEEEccC-------CceEEEEecCceEEEecCchhhhhhhcc-ccCchhhhhHhhhh-------------ceEEE
Confidence 345566999874 5699999999999999999664222222 34448899999765 78998
Q ss_pred EEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecCcEEEEEeCCeEE
Q 046828 142 VACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLAAQIY 221 (627)
Q Consensus 142 v~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~~~LaV~~~~~I~ 221 (627)
|+ +| .+|.|.|++|.|||.....+|.++.|.++|.+|.+++++|||.++.+|+
T Consensus 64 VG------Gg---------------------~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~ 116 (346)
T KOG2111|consen 64 VG------GG---------------------SRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIY 116 (346)
T ss_pred ec------CC---------------------CCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEE
Confidence 86 22 1256889999999999999999999999999999999999999999999
Q ss_pred EEeCC-CCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC----ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCC
Q 046828 222 CFDAL-TLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP----RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPS 296 (627)
Q Consensus 222 i~D~~-t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~----r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s 296 (627)
+|... +.+.++.+++.++|. |+ +++.| ..|||++
T Consensus 117 VytF~~n~k~l~~~et~~NPk----Gl---------C~~~~~~~k~~LafPg---------------------------- 155 (346)
T KOG2111|consen 117 VYTFPDNPKLLHVIETRSNPK----GL---------CSLCPTSNKSLLAFPG---------------------------- 155 (346)
T ss_pred EEEcCCChhheeeeecccCCC----ce---------EeecCCCCceEEEcCC----------------------------
Confidence 99988 788899999988872 33 33322 3455543
Q ss_pred CCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe
Q 046828 297 NGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS 376 (627)
Q Consensus 297 ~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~ 376 (627)
-..|.|+|-|+...+
T Consensus 156 -----------------------------------------------------------------~k~GqvQi~dL~~~~ 170 (346)
T KOG2111|consen 156 -----------------------------------------------------------------FKTGQVQIVDLASTK 170 (346)
T ss_pred -----------------------------------------------------------------CccceEEEEEhhhcC
Confidence 134788998887765
Q ss_pred E--EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEE
Q 046828 377 V--ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQD 454 (627)
Q Consensus 377 ~--l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~s 454 (627)
. ...+.||.++|.|++++.+|++|||||.+||+|||||.. +|+ +++++|||...|.|++
T Consensus 171 ~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~-------~g~------------~l~E~RRG~d~A~iy~ 231 (346)
T KOG2111|consen 171 PNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE-------DGT------------LLQELRRGVDRADIYC 231 (346)
T ss_pred cCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC-------CCc------------EeeeeecCCchheEEE
Confidence 4 478999999999999999999999999999999999987 553 8999999999999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCCCccCCCCCCCccccccCCCCCCCCCCeeeeeee
Q 046828 455 ICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPVLSVPWWSSPSFMINQPSFSLPPPLPVTLSVVS 534 (627)
Q Consensus 455 IaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~~~~~~~~~~~~s~~q~~~~~~~p~~~~l~~~~ 534 (627)
|+||||+.|||++|++||+|||.+...... .+.|++.. .+...+|+|++|+||++||+++.
T Consensus 232 iaFSp~~s~LavsSdKgTlHiF~l~~~~~~--~~~~SSl~-----~~~~~lpky~~S~wS~~~f~l~~------------ 292 (346)
T KOG2111|consen 232 IAFSPNSSWLAVSSDKGTLHIFSLRDTENT--EDESSSLS-----FKRLVLPKYFSSEWSFAKFQLPQ------------ 292 (346)
T ss_pred EEeCCCccEEEEEcCCCeEEEEEeecCCCC--cccccccc-----ccccccchhcccceeEEEEEccC------------
Confidence 999999999999999999999999864321 22332211 12257899999999999999831
Q ss_pred eeecCCCCccccccccccccCCccCCCccceeeecccccccCCCcccccccCcceEEEEcCCCcEEEEEeeccCCCCccc
Q 046828 535 RIKNNNSGWLNTVSSTASSTAGKTSIPSGALAAVFHSSLHQDLQPLDSKVNDLEHVLVYTPSGHVVQYKLLSSIGGESSE 614 (627)
Q Consensus 535 ~i~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~y~l~p~~~~~~~~ 614 (627)
+ + .++++ |.+ + ...+++++.||..+.|.|+|.+||||.+
T Consensus 293 ----~---------------------~-~~~~~-fg~------~--------~nsvi~i~~Dgsy~k~~f~~~~~g~~~~ 331 (346)
T KOG2111|consen 293 ----G---------------------T-QCIIA-FGS------E--------TNTVIAICADGSYYKFKFDPKNGGESSR 331 (346)
T ss_pred ----C---------------------C-cEEEE-ecC------C--------CCeEEEEEeCCcEEEEEeccccccchhh
Confidence 1 1 25554 322 2 1489999999999999999999999997
Q ss_pred ccc
Q 046828 615 LGK 617 (627)
Q Consensus 615 ~~~ 617 (627)
..-
T Consensus 332 ~~~ 334 (346)
T KOG2111|consen 332 HEY 334 (346)
T ss_pred hhh
Confidence 543
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.2e-22 Score=206.41 Aligned_cols=331 Identities=17% Similarity=0.159 Sum_probs=219.6
Q ss_pred CCCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCC-CCC-CCCcCC
Q 046828 57 DSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAK-SDG-QEGFRN 134 (627)
Q Consensus 57 ~~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~-~~~-~D~f~~ 134 (627)
.-..|.|.|+.+.|.- .++.++..+-|.++++||+++.. ..-.+..|+--|-++.+.|.-.. ..+ +|+
T Consensus 110 S~~GH~e~Vl~~~fsp------~g~~l~tGsGD~TvR~WD~~TeT-p~~t~KgH~~WVlcvawsPDgk~iASG~~dg--- 179 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSP------TGSRLVTGSGDTTVRLWDLDTET-PLFTCKGHKNWVLCVAWSPDGKKIASGSKDG--- 179 (480)
T ss_pred ccCCCCCcEEEEEecC------CCceEEecCCCceEEeeccCCCC-cceeecCCccEEEEEEECCCcchhhccccCC---
Confidence 3456889999999952 34778888889999999999844 45667789999999999886533 111 132
Q ss_pred CCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCC-------CCCCcCCcEEEEEECCCCceEEEEecCC-eEEEEE
Q 046828 135 SHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQP-------GNVAMSPTAVRFYSLRSHNYVHVLRFRS-TVYMVR 206 (627)
Q Consensus 135 ~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~-------~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~V~sV~ 206 (627)
- +..||-.++.-.+.++..+.--+..=.|+|.. .++..-++.|+|||++.++++.++..++ +|.+|+
T Consensus 180 ---~--I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvr 254 (480)
T KOG0271|consen 180 ---S--IRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVR 254 (480)
T ss_pred ---e--EEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEE
Confidence 1 23354321111011110000000001133332 2233448999999999999999998665 999999
Q ss_pred ecC-cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceE-EEcCCCCCcCCCCccCCCC
Q 046828 207 CSP-RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWL-AYASNNPLLPNTGRLSPQS 283 (627)
Q Consensus 207 ~s~-~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~L-Ay~~~~~~v~~~gr~~~q~ 283 (627)
+-. .+|.++. +.+|++|++.++.+.+++.+|... ++.++++..+. -.+.-++ .|+..
T Consensus 255 wGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahw-------------vN~lalsTdy~LRtgaf~~----t~~~~--- 314 (480)
T KOG0271|consen 255 WGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHW-------------VNHLALSTDYVLRTGAFDH----TGRKP--- 314 (480)
T ss_pred EcCCceEEecCCCceEEEEEccchhHHHhhcccchh-------------eeeeeccchhhhhcccccc----ccccC---
Confidence 985 7888876 457999999999999999998653 56677765321 1111111 11110
Q ss_pred CCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCC
Q 046828 284 LTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDI 363 (627)
Q Consensus 284 ~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~ 363 (627)
. +++ -..+-|.+.-..+ +++.+ -++ .+++.
T Consensus 315 --------~-~~s---e~~~~Al~rY~~~------~~~~~----------------------------erl----VSgsD 344 (480)
T KOG0271|consen 315 --------K-SFS---EEQKKALERYEAV------LKDSG----------------------------ERL----VSGSD 344 (480)
T ss_pred --------C-ChH---HHHHHHHHHHHHh------hccCc----------------------------cee----EEecC
Confidence 0 000 0111111111000 00000 011 24678
Q ss_pred CCeEEEEECC-CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 364 AGMVVVKDIV-SRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 364 dG~V~IwD~~-s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
|.++.+|+-. +.+++..+.+|..-|..+.|||||+++|+||-|.. |++||-. +|. .+..
T Consensus 345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS-VkLW~g~-------tGk------------~las 404 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS-VKLWDGR-------TGK------------FLAS 404 (480)
T ss_pred CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc-eeeeeCC-------Ccc------------hhhh
Confidence 9999999965 45688999999999999999999999999999976 8999975 553 3444
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccc
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHV 494 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v 494 (627)
| |||- +.|+.|+||.|++.|+++|.|.|++||++....-...+-+|...|
T Consensus 405 f-RGHv-~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEV 454 (480)
T KOG0271|consen 405 F-RGHV-AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEV 454 (480)
T ss_pred h-hhcc-ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceE
Confidence 4 8885 459999999999999999999999999999887766676775543
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.89 E-value=3.7e-22 Score=221.34 Aligned_cols=176 Identities=20% Similarity=0.285 Sum_probs=140.2
Q ss_pred CcEEEEEECCCCceEEEEecCC-eEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
+.+||+|++.|..++-.++.+. ||++|+|+| -+.|++..+ +.++|.....+.++.+.+|-.- +
T Consensus 472 D~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsD-------------V 538 (707)
T KOG0263|consen 472 DSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSD-------------V 538 (707)
T ss_pred CcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccc-------------c
Confidence 4789999999999999999665 999999998 577777655 5889988776666666555321 2
Q ss_pred ceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccc
Q 046828 255 GPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDF 334 (627)
Q Consensus 255 ~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~ 334 (627)
.++++.| +.. |
T Consensus 539 ~cv~FHP-------Ns~----------------------------------------------------------Y---- 549 (707)
T KOG0263|consen 539 DCVSFHP-------NSN----------------------------------------------------------Y---- 549 (707)
T ss_pred ceEEECC-------ccc----------------------------------------------------------c----
Confidence 3333322 110 0
Q ss_pred cCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEe
Q 046828 335 IPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFR 414 (627)
Q Consensus 335 ~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwd 414 (627)
.+.++.|.+||+||+.++..+..|.+|..||.+|+|||+|++||+|++||. |+|||
T Consensus 550 -----------------------~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWD 605 (707)
T KOG0263|consen 550 -----------------------VATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWD 605 (707)
T ss_pred -----------------------cccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEE
Confidence 013457889999999999999999999999999999999999999999997 89999
Q ss_pred CCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 415 IMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 415 i~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
+. +| .+....+||+ +.|++|.||.||..||+++.|.+|++||+...
T Consensus 606 l~-------~~-------------~~v~~l~~Ht-~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 606 LA-------NG-------------SLVKQLKGHT-GTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cC-------CC-------------cchhhhhccc-CceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 95 33 3344447884 56999999999999999999999999998754
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=4.1e-22 Score=207.92 Aligned_cols=268 Identities=15% Similarity=0.179 Sum_probs=204.5
Q ss_pred CCCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCC
Q 046828 57 DSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSH 136 (627)
Q Consensus 57 ~~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~r 136 (627)
.+....-+|..|.|-. .+..+++.+.++..+||.+++. +....+-.|.+.|..+.+-|... .
T Consensus 170 SQ~gd~rPis~~~fS~------ds~~laT~swsG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~~------~----- 231 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSR------DSKHLATGSWSGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVDS------D----- 231 (459)
T ss_pred hhccCCCcceeeEeec------CCCeEEEeecCCceeEeecCCc-ceeEEEeccccceeeEEEccCCC------c-----
Confidence 3444456788888854 2367888888999999999987 44566667888888888877530 0
Q ss_pred CEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecC--cEEE
Q 046828 137 PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSP--RIVA 213 (627)
Q Consensus 137 pLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~--~~La 213 (627)
--||.+ ..+++|++|++.+.+++..|+.+ ..|-.|+|+| ++|+
T Consensus 232 ~~lat~----------------------------------s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~ 277 (459)
T KOG0272|consen 232 LNLATA----------------------------------SADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLG 277 (459)
T ss_pred cceeee----------------------------------ccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceee
Confidence 112322 13588999999999999999965 4999999988 8998
Q ss_pred EEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 214 VGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 214 V~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
++. +.+-++||+.|.+++.-.++|..+ +-. +||-.+.
T Consensus 278 TasfD~tWRlWD~~tk~ElL~QEGHs~~-------------v~~-------iaf~~DG---------------------- 315 (459)
T KOG0272|consen 278 TASFDSTWRLWDLETKSELLLQEGHSKG-------------VFS-------IAFQPDG---------------------- 315 (459)
T ss_pred ecccccchhhcccccchhhHhhcccccc-------------cce-------eEecCCC----------------------
Confidence 886 557899999999988888888653 112 2333221
Q ss_pred CCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI 372 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~ 372 (627)
+++ .+++.|..-+|||+
T Consensus 316 ------SL~---------------------------------------------------------~tGGlD~~~RvWDl 332 (459)
T KOG0272|consen 316 ------SLA---------------------------------------------------------ATGGLDSLGRVWDL 332 (459)
T ss_pred ------cee---------------------------------------------------------eccCccchhheeec
Confidence 110 13456777899999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcE
Q 046828 373 VSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVI 452 (627)
Q Consensus 373 ~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I 452 (627)
.+++++..|.+|..+|..|+|+|+|..|||+|.|++ ++|||+. . . ..+|.. -+|++ .|
T Consensus 333 Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR-~-------r-----------~~ly~i-pAH~n-lV 390 (459)
T KOG0272|consen 333 RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLR-M-------R-----------SELYTI-PAHSN-LV 390 (459)
T ss_pred ccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeec-c-------c-----------ccceec-ccccc-hh
Confidence 999999999999999999999999999999999998 8999996 1 1 145555 46654 59
Q ss_pred EEEEEcc-CCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCCCc
Q 046828 453 QDICFSH-YSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPVL 503 (627)
Q Consensus 453 ~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~~ 503 (627)
..+.|+| -|++|+++|.|+|++||.-........+.+|...|-.-...|..
T Consensus 391 S~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~ 442 (459)
T KOG0272|consen 391 SQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDS 442 (459)
T ss_pred hheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCC
Confidence 9999999 88999999999999999999888888899998766543334443
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=1.8e-21 Score=203.09 Aligned_cols=240 Identities=20% Similarity=0.194 Sum_probs=182.3
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
..|.++|-.+.|--.+ +...+...++|+.+++|+++....+.++.+ |...|.-|+|-|.- .+
T Consensus 214 ~gH~~~v~~~~fhP~~----~~~~lat~s~Dgtvklw~~~~e~~l~~l~g-H~~RVs~VafHPsG-------------~~ 275 (459)
T KOG0272|consen 214 RGHTSRVGAAVFHPVD----SDLNLATASADGTVKLWKLSQETPLQDLEG-HLARVSRVAFHPSG-------------KF 275 (459)
T ss_pred eccccceeeEEEccCC----CccceeeeccCCceeeeccCCCcchhhhhc-chhhheeeeecCCC-------------ce
Confidence 3466777777774321 235788899999999999998655555443 43444445554432 45
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC-eEEEEEecC--cEEEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP--RIVAVG 215 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~--~~LaV~ 215 (627)
|+.. +.+.+-++||++|++++.-.+.++ .|++|+|.+ -++++|
T Consensus 276 L~Ta----------------------------------sfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 276 LGTA----------------------------------SFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred eeec----------------------------------ccccchhhcccccchhhHhhcccccccceeEecCCCceeecc
Confidence 5432 235778999999999999888776 999999987 577776
Q ss_pred -eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCC
Q 046828 216 -LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTS 294 (627)
Q Consensus 216 -~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s 294 (627)
++.--+|||++|++++..+.+|..+ +-.+++ .++
T Consensus 322 GlD~~~RvWDlRtgr~im~L~gH~k~-------------I~~V~f-------sPN------------------------- 356 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLAGHIKE-------------ILSVAF-------SPN------------------------- 356 (459)
T ss_pred CccchhheeecccCcEEEEecccccc-------------eeeEeE-------CCC-------------------------
Confidence 4556789999999999999998654 212333 221
Q ss_pred CCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 295 PSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 295 ~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
||+ .++++.|++++|||+..
T Consensus 357 ----------------------------Gy~--------------------------------lATgs~Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 357 ----------------------------GYH--------------------------------LATGSSDNTCKVWDLRM 376 (459)
T ss_pred ----------------------------ceE--------------------------------EeecCCCCcEEEeeecc
Confidence 111 12356899999999999
Q ss_pred CeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEE
Q 046828 375 RSVISQFRAHTSPISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQ 453 (627)
Q Consensus 375 ~~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~ 453 (627)
.+.+.+|.+|.+-|+.|+|+| .|.+|+|||-|++ ++||... +++ .+..| .||+. +|.
T Consensus 377 r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~-------~~~------------~~ksL-aGHe~-kV~ 434 (459)
T KOG0272|consen 377 RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTR-------TWS------------PLKSL-AGHEG-KVI 434 (459)
T ss_pred cccceecccccchhhheEecccCCeEEEEcccCcc-eeeecCC-------Ccc------------cchhh-cCCcc-ceE
Confidence 999999999999999999999 8999999999998 7999864 221 34444 68874 799
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEE
Q 046828 454 DICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 454 sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
+++.|+|++++++++.|.|+++|.
T Consensus 435 s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 435 SLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999999995
No 8
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.85 E-value=3.2e-18 Score=169.31 Aligned_cols=251 Identities=19% Similarity=0.229 Sum_probs=181.0
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.++++|..+.|... .+.+++.+.++.+++||+.... ....+..|...+..+.+.|.. .+|
T Consensus 7 ~h~~~i~~~~~~~~------~~~l~~~~~~g~i~i~~~~~~~-~~~~~~~~~~~i~~~~~~~~~-------------~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPD------GKLLATGSGDGTIKVWDLETGE-LLRTLKGHTGPVRDVAASADG-------------TYL 66 (289)
T ss_pred ccCCCEEEEEEcCC------CCEEEEeecCcEEEEEEeeCCC-cEEEEecCCcceeEEEECCCC-------------CEE
Confidence 46788999998642 2556666668889999999754 344555666776666665432 345
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecC--cEEEEEe
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSP--RIVAVGL 216 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~--~~LaV~~ 216 (627)
+++. .++.|++||+++++.+..+..+ ..|.++.+++ ++++++.
T Consensus 67 ~~~~----------------------------------~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 112 (289)
T cd00200 67 ASGS----------------------------------SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS 112 (289)
T ss_pred EEEc----------------------------------CCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEec
Confidence 4322 1367999999998888888754 4899999987 6777777
Q ss_pred -CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCC
Q 046828 217 -AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSP 295 (627)
Q Consensus 217 -~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~ 295 (627)
++.|++||+.+++....+..|..+ .. .+++.+....
T Consensus 113 ~~~~i~~~~~~~~~~~~~~~~~~~~-------------i~-------~~~~~~~~~~----------------------- 149 (289)
T cd00200 113 RDKTIKVWDVETGKCLTTLRGHTDW-------------VN-------SVAFSPDGTF----------------------- 149 (289)
T ss_pred CCCeEEEEECCCcEEEEEeccCCCc-------------EE-------EEEEcCcCCE-----------------------
Confidence 789999999988877777654332 11 2233321100
Q ss_pred CCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC
Q 046828 296 SNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR 375 (627)
Q Consensus 296 s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~ 375 (627)
+ ..+..+|.|++||+.++
T Consensus 150 -------------------------------l-------------------------------~~~~~~~~i~i~d~~~~ 167 (289)
T cd00200 150 -------------------------------V-------------------------------ASSSQDGTIKLWDLRTG 167 (289)
T ss_pred -------------------------------E-------------------------------EEEcCCCcEEEEEcccc
Confidence 0 01235789999999999
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEE
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDI 455 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sI 455 (627)
+.+..+..|..+|.+++|+|+|+.|++++.+|. |++||+. .+. .+..+ .++. ..|.++
T Consensus 168 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~-------~~~------------~~~~~-~~~~-~~i~~~ 225 (289)
T cd00200 168 KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLS-------TGK------------CLGTL-RGHE-NGVNSV 225 (289)
T ss_pred ccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECC-------CCc------------eecch-hhcC-CceEEE
Confidence 999999999999999999999999999999997 7999985 221 23322 2333 359999
Q ss_pred EEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccc
Q 046828 456 CFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQN 491 (627)
Q Consensus 456 aFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~ 491 (627)
+|++|++++++++.+|++++|++........+..|.
T Consensus 226 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 261 (289)
T cd00200 226 AFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT 261 (289)
T ss_pred EEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC
Confidence 999999999999889999999998655444444443
No 9
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.5e-19 Score=186.73 Aligned_cols=253 Identities=16% Similarity=0.200 Sum_probs=190.5
Q ss_pred hhhhhhhhccC-C----------CCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCce
Q 046828 46 AGASVAASISG-D----------SHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPV 114 (627)
Q Consensus 46 ~~~s~~~~~~~-~----------~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V 114 (627)
|..+..++|.. + -..|+.-|.-..|+.+.+.+ ..+++...+-|+.++|||+.-.. ...+++.|-.+|
T Consensus 173 ASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p-~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~V 250 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP-PCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASV 250 (480)
T ss_pred hccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCC-CccceecccCCCCEEEEEccCce-EEEEeccCccce
Confidence 34467777763 1 12366778888998876654 34677778889999999999754 466778899999
Q ss_pred EEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEE
Q 046828 115 TFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVH 194 (627)
Q Consensus 115 ~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~ 194 (627)
+|+++=-. .||+. | +.+++|++|+...|.+.+
T Consensus 251 TCvrwGG~--------------gliyS------------------------g----------S~DrtIkvw~a~dG~~~r 282 (480)
T KOG0271|consen 251 TCVRWGGE--------------GLIYS------------------------G----------SQDRTIKVWRALDGKLCR 282 (480)
T ss_pred EEEEEcCC--------------ceEEe------------------------c----------CCCceEEEEEccchhHHH
Confidence 99887321 24431 1 125899999999999999
Q ss_pred EEecCC-eEEEEEec-------------Cc-------------------------EEEEEeCC-eEEEEeCCCCc-eeEE
Q 046828 195 VLRFRS-TVYMVRCS-------------PR-------------------------IVAVGLAA-QIYCFDALTLE-SKFS 233 (627)
Q Consensus 195 tL~f~s-~V~sV~~s-------------~~-------------------------~LaV~~~~-~I~i~D~~t~e-~~~t 233 (627)
+|+.++ +|..+++| .+ +||++.++ ++++|+....+ .+..
T Consensus 283 ~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r 362 (480)
T KOG0271|consen 283 ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR 362 (480)
T ss_pred hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhh
Confidence 999665 99999998 12 47777665 78888755433 4445
Q ss_pred EEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhh
Q 046828 234 VLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQ 311 (627)
Q Consensus 234 l~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~ 311 (627)
+.+|... ++-++++| ||+|.++
T Consensus 363 mtgHq~l-------------Vn~V~fSPd~r~IASaS------------------------------------------- 386 (480)
T KOG0271|consen 363 MTGHQAL-------------VNHVSFSPDGRYIASAS------------------------------------------- 386 (480)
T ss_pred hhchhhh-------------eeeEEECCCccEEEEee-------------------------------------------
Confidence 5566442 33445544 5665543
Q ss_pred hhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEE
Q 046828 312 LAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISAL 391 (627)
Q Consensus 312 l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~l 391 (627)
.|..|++||-.+++.++.|++|-.+|+.+
T Consensus 387 ---------------------------------------------------FDkSVkLW~g~tGk~lasfRGHv~~VYqv 415 (480)
T KOG0271|consen 387 ---------------------------------------------------FDKSVKLWDGRTGKFLASFRGHVAAVYQV 415 (480)
T ss_pred ---------------------------------------------------cccceeeeeCCCcchhhhhhhccceeEEE
Confidence 56779999999999999999999999999
Q ss_pred EECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCC
Q 046828 392 CFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRG 471 (627)
Q Consensus 392 aFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dg 471 (627)
+|+.|.++|+++|.|.| ++|||+. . .++..-.-||. ..|+++.|||||+.+|+++.|.
T Consensus 416 awsaDsRLlVS~SkDsT-LKvw~V~-t-------------------kKl~~DLpGh~-DEVf~vDwspDG~rV~sggkdk 473 (480)
T KOG0271|consen 416 AWSADSRLLVSGSKDST-LKVWDVR-T-------------------KKLKQDLPGHA-DEVFAVDWSPDGQRVASGGKDK 473 (480)
T ss_pred EeccCccEEEEcCCCce-EEEEEee-e-------------------eeecccCCCCC-ceEEEEEecCCCceeecCCCce
Confidence 99999999999999987 7999996 1 13443336775 3599999999999999999999
Q ss_pred eEEEEE
Q 046828 472 TCHIFV 477 (627)
Q Consensus 472 TvhIw~ 477 (627)
.+++|.
T Consensus 474 v~~lw~ 479 (480)
T KOG0271|consen 474 VLRLWR 479 (480)
T ss_pred EEEeec
Confidence 999995
No 10
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.83 E-value=1.5e-17 Score=164.43 Aligned_cols=235 Identities=17% Similarity=0.243 Sum_probs=170.4
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEE
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLV 141 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlav 141 (627)
...+..+.|.. ..+.+++.+.++.++|||+..... ...+..+++.+.++.+.+.. .+++.
T Consensus 51 ~~~i~~~~~~~------~~~~l~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~i~~~~~~~~~-------------~~~~~ 110 (289)
T cd00200 51 TGPVRDVAASA------DGTYLASGSSDKTIRLWDLETGEC-VRTLTGHTSYVSSVAFSPDG-------------RILSS 110 (289)
T ss_pred CcceeEEEECC------CCCEEEEEcCCCeEEEEEcCcccc-eEEEeccCCcEEEEEEcCCC-------------CEEEE
Confidence 34454555542 125677788899999999997543 33444567777777776541 44432
Q ss_pred EEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe-C
Q 046828 142 VACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL-A 217 (627)
Q Consensus 142 v~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~-~ 217 (627)
+. .++.|++||+++++.+..+. +...|.++.+++ ++|+++. +
T Consensus 111 -~~---------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 156 (289)
T cd00200 111 -SS---------------------------------RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD 156 (289)
T ss_pred -ec---------------------------------CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCC
Confidence 20 12679999999999998888 556899999998 6777777 7
Q ss_pred CeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCC
Q 046828 218 AQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSN 297 (627)
Q Consensus 218 ~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~ 297 (627)
+.|++||+.+++.+..+..+..+ ...+ ++.++...
T Consensus 157 ~~i~i~d~~~~~~~~~~~~~~~~-------------i~~~-------~~~~~~~~------------------------- 191 (289)
T cd00200 157 GTIKLWDLRTGKCVATLTGHTGE-------------VNSV-------AFSPDGEK------------------------- 191 (289)
T ss_pred CcEEEEEccccccceeEecCccc-------------cceE-------EECCCcCE-------------------------
Confidence 79999999988877776654322 1122 22221100
Q ss_pred CcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeE
Q 046828 298 GNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSV 377 (627)
Q Consensus 298 gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~ 377 (627)
+ + .+..+|.|++||+.+++.
T Consensus 192 --------------l--------------~--------------------------------~~~~~~~i~i~d~~~~~~ 211 (289)
T cd00200 192 --------------L--------------L--------------------------------SSSSDGTIKLWDLSTGKC 211 (289)
T ss_pred --------------E--------------E--------------------------------EecCCCcEEEEECCCCce
Confidence 0 0 122478999999999999
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEE
Q 046828 378 ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICF 457 (627)
Q Consensus 378 l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaF 457 (627)
+..+..|..+|.+++|+|++.++++++.+|+ |++||+. .+ ..+..+. ++. ..|.+++|
T Consensus 212 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~-------~~------------~~~~~~~-~~~-~~i~~~~~ 269 (289)
T cd00200 212 LGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLR-------TG------------ECVQTLS-GHT-NSVTSLAW 269 (289)
T ss_pred ecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcC-------Cc------------eeEEEcc-ccC-CcEEEEEE
Confidence 9999899999999999999999999998998 7999985 22 1344443 443 35999999
Q ss_pred ccCCCEEEEEeCCCeEEEEE
Q 046828 458 SHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 458 SpDg~~Las~S~dgTvhIw~ 477 (627)
++++++|++++.||+++||+
T Consensus 270 ~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 270 SPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCCCEEEEecCCCeEEecC
Confidence 99999999999999999995
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.83 E-value=1.1e-18 Score=172.13 Aligned_cols=267 Identities=19% Similarity=0.226 Sum_probs=178.4
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
-.++..|||.+++.|...++. ....+...|+.|.-+++-|.- .+||+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~-C~rTiqh~dsqVNrLeiTpdk-------------~~LAaa~----------------- 59 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGI-CSRTIQHPDSQVNRLEITPDK-------------KDLAAAG----------------- 59 (311)
T ss_pred eEEEeccCcceeeeeehhcCe-EEEEEecCccceeeEEEcCCc-------------chhhhcc-----------------
Confidence 456668999999999999855 456666778988888876542 4455422
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCc--eEEEEecC-CeEEEEEec--CcEEEEEe-CCeEEEEeCCCCceeEEE
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN--YVHVLRFR-STVYMVRCS--PRIVAVGL-AAQIYCFDALTLESKFSV 234 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~--~V~tL~f~-s~V~sV~~s--~~~LaV~~-~~~I~i~D~~t~e~~~tl 234 (627)
| -.||+||++++. ++.+++.+ ..|.+|.|- .|.+.+|. ++.++|||++...+.+.+
T Consensus 60 -------~-----------qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~ 121 (311)
T KOG0315|consen 60 -------N-----------QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY 121 (311)
T ss_pred -------C-----------CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc
Confidence 1 349999999886 48888866 589888886 48888876 558999999997654433
Q ss_pred EcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhh
Q 046828 235 LTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQL 312 (627)
Q Consensus 235 ~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l 312 (627)
.++.| ++.+.+.| --|-.+..+.-+..|.-.. ..++..- -|+.+
T Consensus 122 -~~~sp-------------Vn~vvlhpnQteLis~dqsg~irvWDl~~-~~c~~~l-----iPe~~-------------- 167 (311)
T KOG0315|consen 122 -QHNSP-------------VNTVVLHPNQTELISGDQSGNIRVWDLGE-NSCTHEL-----IPEDD-------------- 167 (311)
T ss_pred -cCCCC-------------cceEEecCCcceEEeecCCCcEEEEEccC-Ccccccc-----CCCCC--------------
Confidence 23333 44555655 2344455444444332110 0000000 00000
Q ss_pred hcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC------eEEEEeccCCC
Q 046828 313 AAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR------SVISQFRAHTS 386 (627)
Q Consensus 313 ~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~------~~l~~~~aH~~ 386 (627)
.-.++++ ..|||+ ..+.+...|...+|++-+. +++..|++|..
T Consensus 168 ---------~~i~sl~-----v~~dgs-----------------ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~ 216 (311)
T KOG0315|consen 168 ---------TSIQSLT-----VMPDGS-----------------MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNG 216 (311)
T ss_pred ---------cceeeEE-----EcCCCc-----------------EEEEecCCccEEEEEccCCCccccceEhhheecccc
Confidence 0001111 012221 1123457899999998765 57888999999
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI 466 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las 466 (627)
-|....||||+++|||+|.|.+ ++||+++.. -++-....|+.. .+++.+||.||+||++
T Consensus 217 ~il~C~lSPd~k~lat~ssdkt-v~iwn~~~~-------------------~kle~~l~gh~r-WvWdc~FS~dg~YlvT 275 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKT-VKIWNTDDF-------------------FKLELVLTGHQR-WVWDCAFSADGEYLVT 275 (311)
T ss_pred eEEEEEECCCCcEEEeecCCce-EEEEecCCc-------------------eeeEEEeecCCc-eEEeeeeccCccEEEe
Confidence 9999999999999999999987 799998511 122222346543 5999999999999999
Q ss_pred EeCCCeEEEEEcCCCC
Q 046828 467 VSSRGTCHIFVLTPFG 482 (627)
Q Consensus 467 ~S~dgTvhIw~i~~~g 482 (627)
++.|+++|+|++....
T Consensus 276 assd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 276 ASSDHTARLWDLSAGK 291 (311)
T ss_pred cCCCCceeecccccCc
Confidence 9999999999997644
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.81 E-value=7.1e-18 Score=178.29 Aligned_cols=283 Identities=14% Similarity=0.185 Sum_probs=201.1
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEE
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLV 141 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlav 141 (627)
..+|....|+. ++..+...-|++-+++|+.+- +....++.|.|||-.+++...- .+|+.
T Consensus 235 nkdVT~L~Wn~------~G~~LatG~~~G~~riw~~~G--~l~~tl~~HkgPI~slKWnk~G-------------~yilS 293 (524)
T KOG0273|consen 235 NKDVTSLDWNN------DGTLLATGSEDGEARIWNKDG--NLISTLGQHKGPIFSLKWNKKG-------------TYILS 293 (524)
T ss_pred cCCcceEEecC------CCCeEEEeecCcEEEEEecCc--hhhhhhhccCCceEEEEEcCCC-------------CEEEe
Confidence 34455555542 224455555666699999884 4477889999999888875432 44442
Q ss_pred EEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeE-EEEEecC-cEEEE-EeCC
Q 046828 142 VACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTV-YMVRCSP-RIVAV-GLAA 218 (627)
Q Consensus 142 v~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V-~sV~~s~-~~LaV-~~~~ 218 (627)
+| .++++.+||..+|+.-..+.|++.. .+|.+-. .-+|+ +.++
T Consensus 294 --------~~--------------------------vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~ 339 (524)
T KOG0273|consen 294 --------GG--------------------------VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDG 339 (524)
T ss_pred --------cc--------------------------CCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCc
Confidence 11 2478999999999999999999855 8888854 44444 4677
Q ss_pred eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCC
Q 046828 219 QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPS 296 (627)
Q Consensus 219 ~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s 296 (627)
.|++|-+.--+...++.+|.++ ++.+-..| .+||.++++.++.+|.+....
T Consensus 340 ~i~V~kv~~~~P~~t~~GH~g~-------------V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-------------- 392 (524)
T KOG0273|consen 340 CIHVCKVGEDRPVKTFIGHHGE-------------VNALKWNPTGSLLASCSDDGTLKIWSMGQSN-------------- 392 (524)
T ss_pred eEEEEEecCCCcceeeecccCc-------------eEEEEECCCCceEEEecCCCeeEeeecCCCc--------------
Confidence 8999998877788899998876 55666775 699999999999988653100
Q ss_pred CCcccchhhhhh-hhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC
Q 046828 297 NGNLMARYAVES-SKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR 375 (627)
Q Consensus 297 ~gs~v~~~a~~~-~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~ 375 (627)
.. -.+.. .|++ |. -.| .|+|.... ..|..-+ .+.+..|++|++||+..+
T Consensus 393 ----~~-~~l~~Hskei----~t----------~~w---sp~g~v~~----n~~~~~~----l~sas~dstV~lwdv~~g 442 (524)
T KOG0273|consen 393 ----SV-HDLQAHSKEI----YT----------IKW---SPTGPVTS----NPNMNLM----LASASFDSTVKLWDVESG 442 (524)
T ss_pred ----ch-hhhhhhccce----ee----------Eee---cCCCCccC----CCcCCce----EEEeecCCeEEEEEccCC
Confidence 00 00111 1221 11 112 23331110 0011111 135678999999999999
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEE
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDI 455 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sI 455 (627)
.+++.|..|+.||++|+|+|+|++||+||.||- |+||++. .+ .+++-.+|. ..|..+
T Consensus 443 v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~-V~iws~~-------~~-------------~l~~s~~~~--~~Ifel 499 (524)
T KOG0273|consen 443 VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC-VHIWSTK-------TG-------------KLVKSYQGT--GGIFEL 499 (524)
T ss_pred ceeEeeccCCCceEEEEecCCCcEEEecCCCCe-eEecccc-------ch-------------heeEeecCC--CeEEEE
Confidence 999999999999999999999999999999997 7999985 33 466665654 359999
Q ss_pred EEccCCCEEEEEeCCCeEEEEEcC
Q 046828 456 CFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 456 aFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
+|+.+|..|+++-.||.+.+-++.
T Consensus 500 ~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 500 CWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999999999998874
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.81 E-value=1e-17 Score=168.63 Aligned_cols=224 Identities=14% Similarity=0.138 Sum_probs=176.3
Q ss_pred CCCeEEEEeccCcEEEEecCCC--C---CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcce
Q 046828 79 SFKHVLLLGYSNGFQVLDVEDA--T---NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLV 153 (627)
Q Consensus 79 ~~~~vl~~Gy~~G~qVWdv~~~--~---~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~ 153 (627)
++.-|...|.+|-.-||++... + .+...|..|.|-+.+++++... .| ++ ++|
T Consensus 108 Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--------------~i--lT-----~SG-- 164 (343)
T KOG0286|consen 108 SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--------------HI--LT-----GSG-- 164 (343)
T ss_pred CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC--------------ce--Ee-----cCC--
Confidence 4578899999999999999854 2 3445567788999999998632 22 22 122
Q ss_pred eeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC-eEEEEEecC---cEEEEEe-CCeEEEEeCCCC
Q 046828 154 HVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP---RIVAVGL-AAQIYCFDALTL 228 (627)
Q Consensus 154 ~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~---~~LaV~~-~~~I~i~D~~t~ 228 (627)
+.|.-+||+++|+.+..+..+. -|.++.++| +..++|. +...++||++.+
T Consensus 165 -------------------------D~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~ 219 (343)
T KOG0286|consen 165 -------------------------DMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG 219 (343)
T ss_pred -------------------------CceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc
Confidence 3789999999999999998554 999999987 6777764 667999999999
Q ss_pred ceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhh
Q 046828 229 ESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVES 308 (627)
Q Consensus 229 e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~ 308 (627)
.+.+++.+|..- ++.+.+.|.--|+
T Consensus 220 ~c~qtF~ghesD-------------INsv~ffP~G~af------------------------------------------ 244 (343)
T KOG0286|consen 220 QCVQTFEGHESD-------------INSVRFFPSGDAF------------------------------------------ 244 (343)
T ss_pred ceeEeecccccc-------------cceEEEccCCCee------------------------------------------
Confidence 999999988642 3444442211111
Q ss_pred hhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccC--CC
Q 046828 309 SKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAH--TS 386 (627)
Q Consensus 309 ~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH--~~ 386 (627)
+.++.|+++++||++..++++.|... ..
T Consensus 245 --------------------------------------------------atGSDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 245 --------------------------------------------------ATGSDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred --------------------------------------------------eecCCCceeEEEeecCCcEEeeeccCcccC
Confidence 13578999999999999999998833 46
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI 466 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las 466 (627)
+|++++||-+|++|..+-.|.+ ++|||.. .+ .+.-.| .||.+ +|.+|..+|||.-||+
T Consensus 275 gitSv~FS~SGRlLfagy~d~~-c~vWDtl-------k~------------e~vg~L-~GHeN-RvScl~~s~DG~av~T 332 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFT-CNVWDTL-------KG------------ERVGVL-AGHEN-RVSCLGVSPDGMAVAT 332 (343)
T ss_pred CceeEEEcccccEEEeeecCCc-eeEeecc-------cc------------ceEEEe-eccCC-eeEEEEECCCCcEEEe
Confidence 8999999999999999999988 7999987 23 244445 58875 7999999999999999
Q ss_pred EeCCCeEEEEE
Q 046828 467 VSSRGTCHIFV 477 (627)
Q Consensus 467 ~S~dgTvhIw~ 477 (627)
+|-|.+++||.
T Consensus 333 gSWDs~lriW~ 343 (343)
T KOG0286|consen 333 GSWDSTLRIWA 343 (343)
T ss_pred cchhHheeecC
Confidence 99999999994
No 14
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.81 E-value=2.5e-17 Score=182.92 Aligned_cols=237 Identities=17% Similarity=0.211 Sum_probs=177.0
Q ss_pred CCeEEEEeccCcEEEEecCCCC--CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeec
Q 046828 80 FKHVLLLGYSNGFQVLDVEDAT--NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHV 157 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~--~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~ 157 (627)
++.+.....++.+.+|+..... ..+++ ..|+-.|+-+.+.|.. -.| +++
T Consensus 171 g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~-------------~~l--~s~------------- 221 (456)
T KOG0266|consen 171 GRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDG-------------SYL--LSG------------- 221 (456)
T ss_pred CCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCCC-------------cEE--EEe-------------
Confidence 3556667788899999997655 33333 6677778888887754 222 321
Q ss_pred cCcccccCCCCCCCCCCCCcCCcEEEEEEC-CCCceEEEEe-cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeE
Q 046828 158 GRDGLVRDGYDEPQPGNVAMSPTAVRFYSL-RSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKF 232 (627)
Q Consensus 158 ~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl-~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~ 232 (627)
..+.+|+|||+ ..+..+++++ +...|+++.|++ ++|++|. ++.|+|||+.+++++.
T Consensus 222 -------------------s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~ 282 (456)
T KOG0266|consen 222 -------------------SDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR 282 (456)
T ss_pred -------------------cCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE
Confidence 12478999999 5558999998 456999999998 6777775 5589999999999999
Q ss_pred EEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhh
Q 046828 233 SVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQL 312 (627)
Q Consensus 233 tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l 312 (627)
.+.+|..+ +..+ ++..+...
T Consensus 283 ~l~~hs~~-------------is~~-------~f~~d~~~---------------------------------------- 302 (456)
T KOG0266|consen 283 KLKGHSDG-------------ISGL-------AFSPDGNL---------------------------------------- 302 (456)
T ss_pred eeeccCCc-------------eEEE-------EECCCCCE----------------------------------------
Confidence 99888654 2222 33332100
Q ss_pred hcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe--EEEEeccCCCC--e
Q 046828 313 AAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS--VISQFRAHTSP--I 388 (627)
Q Consensus 313 ~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~--~l~~~~aH~~~--I 388 (627)
+ .+++.||.|+|||+.++. ++..+..+..+ +
T Consensus 303 --------------l-------------------------------~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 337 (456)
T KOG0266|consen 303 --------------L-------------------------------VSASYDGTIRVWDLETGSKLCLKLLSGAENSAPV 337 (456)
T ss_pred --------------E-------------------------------EEcCCCccEEEEECCCCceeeeecccCCCCCCce
Confidence 0 023569999999999998 67788887665 9
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC--cEEEEEEccCCCEEEE
Q 046828 389 SALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA--VIQDICFSHYSQWIAI 466 (627)
Q Consensus 389 s~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a--~I~sIaFSpDg~~Las 466 (627)
++++|+|+|.+|+++..|++ +++||+. .+ ......+|+... .+.+..++++++|+.+
T Consensus 338 ~~~~fsp~~~~ll~~~~d~~-~~~w~l~-------~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s 396 (456)
T KOG0266|consen 338 TSVQFSPNGKYLLSASLDRT-LKLWDLR-------SG-------------KSVGTYTGHSNLVRCIFSPTLSTGGKLIYS 396 (456)
T ss_pred eEEEECCCCcEEEEecCCCe-EEEEEcc-------CC-------------cceeeecccCCcceeEecccccCCCCeEEE
Confidence 99999999999999999998 7999996 22 122233566554 4677778999999999
Q ss_pred EeCCCeEEEEEcCCCCCeeecccc
Q 046828 467 VSSRGTCHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 467 ~S~dgTvhIw~i~~~gg~~~~~~h 490 (627)
++.|++|++|++........+..|
T Consensus 397 g~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 397 GSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred EeCCceEEEEeCCccchhhhhcCC
Confidence 999999999999987777777777
No 15
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.81 E-value=2.2e-17 Score=195.06 Aligned_cols=227 Identities=15% Similarity=0.249 Sum_probs=164.0
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
..+++.++++.++|||+..... ...+..|.+.|..+.+.|.- + .+|+..+
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~-~~~~~~H~~~V~~l~~~p~~-------~-----~~L~Sgs----------------- 595 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQL-VTEMKEHEKRVWSIDYSSAD-------P-----TLLASGS----------------- 595 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeE-EEEecCCCCCEEEEEEcCCC-------C-----CEEEEEc-----------------
Confidence 5688888999999999997543 44556788999999987531 1 3444321
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC---cEEEEEe-CCeEEEEeCCCCc-eeEEEE
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP---RIVAVGL-AAQIYCFDALTLE-SKFSVL 235 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~---~~LaV~~-~~~I~i~D~~t~e-~~~tl~ 235 (627)
.+++|++||+++++.+.++..+..|.++.+++ .+|++|. ++.|++||+.+.+ .+.++.
T Consensus 596 -----------------~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~ 658 (793)
T PLN00181 596 -----------------DDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI 658 (793)
T ss_pred -----------------CCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec
Confidence 23789999999999999999888999999953 6777775 5689999998765 344555
Q ss_pred cCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcc
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAG 315 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~g 315 (627)
+|..+ + .++++.... .
T Consensus 659 ~h~~~-------------V-------~~v~f~~~~-~------------------------------------------- 674 (793)
T PLN00181 659 GHSKT-------------V-------SYVRFVDSS-T------------------------------------------- 674 (793)
T ss_pred CCCCC-------------E-------EEEEEeCCC-E-------------------------------------------
Confidence 55432 1 123332100 0
Q ss_pred eeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC------CeEEEEeccCCCCeE
Q 046828 316 LINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS------RSVISQFRAHTSPIS 389 (627)
Q Consensus 316 l~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s------~~~l~~~~aH~~~Is 389 (627)
+ .+++.|+.|+|||+.. .+.+..|.+|...+.
T Consensus 675 -----------l-------------------------------vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~ 712 (793)
T PLN00181 675 -----------L-------------------------------VSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN 712 (793)
T ss_pred -----------E-------------------------------EEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee
Confidence 0 0235789999999974 357889999999999
Q ss_pred EEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe-----ec----CCcCcEEEEEEccC
Q 046828 390 ALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH-----RG----MTSAVIQDICFSHY 460 (627)
Q Consensus 390 ~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~-----rG----~t~a~I~sIaFSpD 460 (627)
+++|+|+|.+||+++.||+ |+||+.. .. .. ...+.+. .| .....|.+++|++|
T Consensus 713 ~v~~s~~~~~lasgs~D~~-v~iw~~~-~~------~~----------~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 713 FVGLSVSDGYIATGSETNE-VFVYHKA-FP------MP----------VLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred EEEEcCCCCEEEEEeCCCE-EEEEECC-CC------Cc----------eEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 9999999999999999998 7999964 11 00 0111110 00 11234999999999
Q ss_pred CCEEEEEeCCCeEEEEEc
Q 046828 461 SQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 461 g~~Las~S~dgTvhIw~i 478 (627)
++.|++++.+|+|+||++
T Consensus 775 ~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCeEEEecCCCcEEEEec
Confidence 999999999999999986
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.80 E-value=4e-17 Score=164.32 Aligned_cols=259 Identities=13% Similarity=0.125 Sum_probs=184.0
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.|-.+|+...|-. +.++++....|+-+-|||.-+... ...+..+.-.|-.+++.|.. .++
T Consensus 53 GH~~Ki~~~~ws~------Dsr~ivSaSqDGklIvWDs~TtnK-~haipl~s~WVMtCA~sPSg-------------~~V 112 (343)
T KOG0286|consen 53 GHLNKIYAMDWST------DSRRIVSASQDGKLIVWDSFTTNK-VHAIPLPSSWVMTCAYSPSG-------------NFV 112 (343)
T ss_pred ccccceeeeEecC------CcCeEEeeccCCeEEEEEcccccc-eeEEecCceeEEEEEECCCC-------------CeE
Confidence 3556777777643 348899999999999999987553 34455455555555555543 454
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCC--c----eEEEEe-cCCeEEEEEecC--c
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSH--N----YVHVLR-FRSTVYMVRCSP--R 210 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~--~----~V~tL~-f~s~V~sV~~s~--~ 210 (627)
| + +| .++...||++++. + ..++|. +.+-+-+++|-. .
T Consensus 113 A--c------GG--------------------------LdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ 158 (343)
T KOG0286|consen 113 A--C------GG--------------------------LDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH 158 (343)
T ss_pred E--e------cC--------------------------cCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc
Confidence 3 2 23 2477889999876 2 344565 445788888876 4
Q ss_pred EEEEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCC
Q 046828 211 IVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVS 290 (627)
Q Consensus 211 ~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s 290 (627)
+|..+.+.+..+||+++++....+.+|..- +-.+++ ++.+
T Consensus 159 ilT~SGD~TCalWDie~g~~~~~f~GH~gD-------------V~slsl-------~p~~-------------------- 198 (343)
T KOG0286|consen 159 ILTGSGDMTCALWDIETGQQTQVFHGHTGD-------------VMSLSL-------SPSD-------------------- 198 (343)
T ss_pred eEecCCCceEEEEEcccceEEEEecCCccc-------------EEEEec-------CCCC--------------------
Confidence 555556678999999999999999888542 112222 2210
Q ss_pred CCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEE
Q 046828 291 PSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVK 370 (627)
Q Consensus 291 ~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~Iw 370 (627)
++ .| .+++-|+..+||
T Consensus 199 -------~n-----------------------------------------------------tF----vSg~cD~~aklW 214 (343)
T KOG0286|consen 199 -------GN-----------------------------------------------------TF----VSGGCDKSAKLW 214 (343)
T ss_pred -------CC-----------------------------------------------------eE----Eecccccceeee
Confidence 00 01 135678999999
Q ss_pred ECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC
Q 046828 371 DIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA 450 (627)
Q Consensus 371 D~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a 450 (627)
|++.+..+..|.+|.+.|++|+|.|+|.-+||+|+|++ .|+||+.-..+ ..+|+ .-....
T Consensus 215 D~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~-----------------~a~ys--~~~~~~ 274 (343)
T KOG0286|consen 215 DVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQE-----------------LAVYS--HDSIIC 274 (343)
T ss_pred eccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcE-----------------Eeeec--cCcccC
Confidence 99999999999999999999999999999999999998 89999962110 12333 111234
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccC
Q 046828 451 VIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDR 496 (627)
Q Consensus 451 ~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~ 496 (627)
.|.+++||-.|++|.++-.|.+++|||.-...-.-.+..|...+..
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvSc 320 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSC 320 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEE
Confidence 5999999999999999999999999998654444467788766544
No 17
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=9.6e-19 Score=177.11 Aligned_cols=246 Identities=17% Similarity=0.230 Sum_probs=185.6
Q ss_pred CCCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCC
Q 046828 57 DSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSH 136 (627)
Q Consensus 57 ~~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~r 136 (627)
-..+++.+++.|.|.- + .+++.+|.++.++++|++... .+.+..|+++|+++...+.-
T Consensus 49 ~~~~~~~plL~c~F~d----~---~~~~~G~~dg~vr~~Dln~~~--~~~igth~~~i~ci~~~~~~------------- 106 (323)
T KOG1036|consen 49 LKFKHGAPLLDCAFAD----E---STIVTGGLDGQVRRYDLNTGN--EDQIGTHDEGIRCIEYSYEV------------- 106 (323)
T ss_pred hheecCCceeeeeccC----C---ceEEEeccCceEEEEEecCCc--ceeeccCCCceEEEEeeccC-------------
Confidence 3567889999999952 2 679999999999999999877 78999999999999987542
Q ss_pred CEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecCcEEEEEe
Q 046828 137 PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGL 216 (627)
Q Consensus 137 pLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~~~LaV~~ 216 (627)
.. +++ |+|| ++|+|||.|....+.++.-...|+++..+..+|+||.
T Consensus 107 ~~--vIs----------------------gsWD----------~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~ 152 (323)
T KOG1036|consen 107 GC--VIS----------------------GSWD----------KTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGT 152 (323)
T ss_pred Ce--EEE----------------------cccC----------ccEEEEeccccccccccccCceEEEEeccCCEEEEee
Confidence 12 232 5676 7899999999888888887789999999999999975
Q ss_pred -CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCC
Q 046828 217 -AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSP 295 (627)
Q Consensus 217 -~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~ 295 (627)
+.+|.+||+++++..++..+.+. ++++..+++-|.-=+|.-. ++.||++.+.+.+.
T Consensus 153 ~~r~v~iyDLRn~~~~~q~reS~l-----------kyqtR~v~~~pn~eGy~~s----SieGRVavE~~d~s-------- 209 (323)
T KOG1036|consen 153 SDRKVLIYDLRNLDEPFQRRESSL-----------KYQTRCVALVPNGEGYVVS----SIEGRVAVEYFDDS-------- 209 (323)
T ss_pred cCceEEEEEcccccchhhhccccc-----------eeEEEEEEEecCCCceEEE----eecceEEEEccCCc--------
Confidence 45799999999988776655443 3567777776643333322 25688876665542
Q ss_pred CCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC
Q 046828 296 SNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR 375 (627)
Q Consensus 296 s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~ 375 (627)
....-.+||++++.+.-++..-+..++..++++++ ++|+ +++.||.|.+||+.++
T Consensus 210 -~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~--------------------~tfa----TgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 210 -EEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH--------------------GTFA----TGGSDGIVNIWDLFNR 264 (323)
T ss_pred -hHHhhhceeEEeeecccCCceEEEEeceeEecccc--------------------ceEE----ecCCCceEEEccCcch
Confidence 12334679999988765554333333333333322 3333 5789999999999999
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCC
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIH 406 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~d 406 (627)
+.+.+|..-...|..|+|+.||.+||+|+..
T Consensus 265 Krl~q~~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 265 KRLKQLAKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred hhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence 9999999888889999999999999999864
No 18
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=9.6e-19 Score=176.56 Aligned_cols=257 Identities=18% Similarity=0.245 Sum_probs=192.4
Q ss_pred hhhhhhhhhhhhhccC-CCCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEE
Q 046828 41 SGVRSAGASVAASISG-DSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQM 119 (627)
Q Consensus 41 ~~~~~~~~s~~~~~~~-~~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~ 119 (627)
.|||-=-..-++.... ....+..+|+.++|.. ++.+|++.|.|+..++||+..++ ...+..|+++|+++++
T Consensus 50 ~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd------dgskVf~g~~Dk~~k~wDL~S~Q--~~~v~~Hd~pvkt~~w 121 (347)
T KOG0647|consen 50 GTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD------DGSKVFSGGCDKQAKLWDLASGQ--VSQVAAHDAPVKTCHW 121 (347)
T ss_pred CceEEEEEecCCcccchhhhccCCCeEEEEEcc------CCceEEeeccCCceEEEEccCCC--eeeeeecccceeEEEE
Confidence 4777655554445554 3456778999999963 23789999999999999999976 6788999999999999
Q ss_pred eeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC
Q 046828 120 QPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR 199 (627)
Q Consensus 120 lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~ 199 (627)
.+.+.. ++| ++ |+|| ++|++||+|+..++.+++++
T Consensus 122 v~~~~~-----------~cl--~T----------------------GSWD----------KTlKfWD~R~~~pv~t~~LP 156 (347)
T KOG0647|consen 122 VPGMNY-----------QCL--VT----------------------GSWD----------KTLKFWDTRSSNPVATLQLP 156 (347)
T ss_pred ecCCCc-----------cee--Ee----------------------cccc----------cceeecccCCCCeeeeeecc
Confidence 877632 343 33 5676 88999999999999999999
Q ss_pred CeEEEEEecCcEEEEEeCC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCC
Q 046828 200 STVYMVRCSPRIVAVGLAA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNT 276 (627)
Q Consensus 200 s~V~sV~~s~~~LaV~~~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~ 276 (627)
.+||++++-..++||++++ .|.+|+++....++.....|. ++++..+|+-. ..-|.++ +.
T Consensus 157 eRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpL-----------k~Q~R~va~f~d~~~~alGs------iE 219 (347)
T KOG0647|consen 157 ERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPL-----------KWQTRCVACFQDKDGFALGS------IE 219 (347)
T ss_pred ceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcc-----------cceeeEEEEEecCCceEeee------ec
Confidence 9999999999999999877 599999988766655444443 24566666643 2224443 57
Q ss_pred CccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhh---hhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCc
Q 046828 277 GRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQ---LAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGR 353 (627)
Q Consensus 277 gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~---l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~ 353 (627)
||+.+|+..++.. ...+.++++++ ....+|.+.++.++.++ |.
T Consensus 220 Grv~iq~id~~~~-----------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-----------------------gt 265 (347)
T KOG0647|consen 220 GRVAIQYIDDPNP-----------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-----------------------GT 265 (347)
T ss_pred ceEEEEecCCCCc-----------cCceeEEEeccCCCCCCceEEecceEeeccc-----------------------ce
Confidence 8888888776411 12345566554 22336777766655443 22
Q ss_pred ccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC
Q 046828 354 NASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI 405 (627)
Q Consensus 354 ~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~ 405 (627)
++ ..+.||+...||-.....+...+.|..||+|-+|+.+|.++|-|..
T Consensus 266 lv----TaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 266 LV----TAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred EE----EecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence 32 4578999999999998889999999999999999999999998863
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.79 E-value=2.6e-17 Score=164.76 Aligned_cols=218 Identities=17% Similarity=0.181 Sum_probs=159.2
Q ss_pred CCcEEEEEECC-----CCceEEEEecCC-eEEEEEecC--c-EEEEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCc
Q 046828 178 SPTAVRFYSLR-----SHNYVHVLRFRS-TVYMVRCSP--R-IVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTS 248 (627)
Q Consensus 178 ~~~tV~lwdl~-----t~~~V~tL~f~s-~V~sV~~s~--~-~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~ 248 (627)
.++++.+|+|. .|..++.++.++ .|.++.+++ . .|..+-++++++||+.+++..+.+.+|..-
T Consensus 36 rDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~d-------- 107 (315)
T KOG0279|consen 36 RDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKD-------- 107 (315)
T ss_pred cceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCc--------
Confidence 35889999875 466788898765 899999987 3 444556789999999999999999998753
Q ss_pred CcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcc-ee
Q 046828 249 GVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMG-YK 325 (627)
Q Consensus 249 ~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g-~~ 325 (627)
+-.+|+++ |-|..++.+.++.+|-.+..+ .+.+++.+ ..
T Consensus 108 -----Vlsva~s~dn~qivSGSrDkTiklwnt~g~c---------------------------------k~t~~~~~~~~ 149 (315)
T KOG0279|consen 108 -----VLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC---------------------------------KYTIHEDSHRE 149 (315)
T ss_pred -----eEEEEecCCCceeecCCCcceeeeeeecccE---------------------------------EEEEecCCCcC
Confidence 33466655 888889888887776443111 11111111 00
Q ss_pred EEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC
Q 046828 326 TLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI 405 (627)
Q Consensus 326 ~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~ 405 (627)
-++-. -++|+.. ... ..+++.|++|+|||+.+.+....|.+|+.-++.++|||||.++++|..
T Consensus 150 WVscv-----------rfsP~~~--~p~----Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk 212 (315)
T KOG0279|consen 150 WVSCV-----------RFSPNES--NPI----IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK 212 (315)
T ss_pred cEEEE-----------EEcCCCC--CcE----EEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC
Confidence 01100 0111100 001 135789999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 406 HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 406 dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
||. +.+||+. .+ .++|.+.- ...|.+++|+|+--||+.+...+ |+||++++..
T Consensus 213 dg~-~~LwdL~-------~~------------k~lysl~a---~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~ 265 (315)
T KOG0279|consen 213 DGE-AMLWDLN-------EG------------KNLYSLEA---FDIVNSLCFSPNRYWLCAATATS-IKIWDLESKA 265 (315)
T ss_pred Cce-EEEEEcc-------CC------------ceeEeccC---CCeEeeEEecCCceeEeeccCCc-eEEEeccchh
Confidence 998 7999996 23 37887742 24699999999999999887665 9999998753
No 20
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.78 E-value=6.2e-19 Score=180.25 Aligned_cols=238 Identities=16% Similarity=0.226 Sum_probs=176.8
Q ss_pred hhccCCCCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCC
Q 046828 52 ASISGDSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEG 131 (627)
Q Consensus 52 ~~~~~~~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~ 131 (627)
..|+.. .+.-+.|+..-+|. .+++.+-.|++++|||.++.. ...++..|.|.|=|+++--
T Consensus 188 ~rinc~-Se~skgVYClQYDD--------~kiVSGlrDnTikiWD~n~~~-c~~~L~GHtGSVLCLqyd~---------- 247 (499)
T KOG0281|consen 188 QRINCR-SENSKGVYCLQYDD--------EKIVSGLRDNTIKIWDKNSLE-CLKILTGHTGSVLCLQYDE---------- 247 (499)
T ss_pred eeecCC-cccCCceEEEEecc--------hhhhcccccCceEEeccccHH-HHHhhhcCCCcEEeeeccc----------
Confidence 345543 23556777777762 456667779999999999855 4667788999998888741
Q ss_pred cCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC-eEEEEEecCc
Q 046828 132 FRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSPR 210 (627)
Q Consensus 132 f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~~ 210 (627)
.+ ++. | .++.||++||..||+++++|-++. .|..++|+..
T Consensus 248 -----rv--iis-------G-------------------------SSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng 288 (499)
T KOG0281|consen 248 -----RV--IVS-------G-------------------------SSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG 288 (499)
T ss_pred -----eE--EEe-------c-------------------------CCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC
Confidence 22 233 1 135889999999999999998664 9999999999
Q ss_pred EEEEEeCC-eEEEEeCCCCce---eEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCC
Q 046828 211 IVAVGLAA-QIYCFDALTLES---KFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTP 286 (627)
Q Consensus 211 ~LaV~~~~-~I~i~D~~t~e~---~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~ 286 (627)
+++++..+ .|.+||+..... .+.+.+|-.. ++.+.++.+++..
T Consensus 289 ~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa-------------VNvVdfd~kyIVs-------------------- 335 (499)
T KOG0281|consen 289 YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA-------------VNVVDFDDKYIVS-------------------- 335 (499)
T ss_pred EEEEecCCceeEEEeccCchHHHHHHHHhhhhhh-------------eeeeccccceEEE--------------------
Confidence 99888765 699999875432 2333444321 2333333333322
Q ss_pred CCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCe
Q 046828 287 PSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGM 366 (627)
Q Consensus 287 ~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~ 366 (627)
++.|-+
T Consensus 336 --------------------------------------------------------------------------ASgDRT 341 (499)
T KOG0281|consen 336 --------------------------------------------------------------------------ASGDRT 341 (499)
T ss_pred --------------------------------------------------------------------------ecCCce
Confidence 346789
Q ss_pred EEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeec
Q 046828 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRG 446 (627)
Q Consensus 367 V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG 446 (627)
|++||+.+.+.+.++.+|...|.|+.+. |+++++||.|.| ||+||+. .|. ++. ...|
T Consensus 342 ikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDnt-IRlwdi~-------~G~------------cLR-vLeG 398 (499)
T KOG0281|consen 342 IKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT-IRLWDIE-------CGA------------CLR-VLEG 398 (499)
T ss_pred EEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCce-EEEEecc-------ccH------------HHH-HHhc
Confidence 9999999999999999999999999885 999999999988 8999996 442 333 3367
Q ss_pred CCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 447 MTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 447 ~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
|.. -|.+|-| |.+.+++|..||+|+||++..-
T Consensus 399 HEe-LvRciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 399 HEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred hHH-hhhheee--cCceeeeccccceEEEEecccc
Confidence 753 4899988 5578999999999999999753
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.78 E-value=1.8e-17 Score=163.71 Aligned_cols=233 Identities=16% Similarity=0.185 Sum_probs=164.4
Q ss_pred CCcEEEEEECCCCceEEEEecCC-eEEEEEecC--cEEEEEeCCeEEEEeCCCCce--eEEEEcCCCCCCCCCCCcCccc
Q 046828 178 SPTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP--RIVAVGLAAQIYCFDALTLES--KFSVLTYPVPHFGGQGTSGVNI 252 (627)
Q Consensus 178 ~~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~--~~LaV~~~~~I~i~D~~t~e~--~~tl~~~p~~~~~~~g~~~~~~ 252 (627)
.+.|||||.+.||.+..++++.. .|..+.+++ +.||++.--.|++||+.+... +.++++|..-
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kN------------ 85 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKN------------ 85 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCc------------
Confidence 46899999999999999999865 899999987 788998888999999998764 6677776431
Q ss_pred ccceee--EcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeee
Q 046828 253 GYGPMA--VGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRY 330 (627)
Q Consensus 253 ~~~~iA--l~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y 330 (627)
+..+. ..+||+..++.+.++++|.-.+++ +.+.. + .. .+++..
T Consensus 86 -VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~-------------------------~qR~~-~----~~----spVn~v 130 (311)
T KOG0315|consen 86 -VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS-------------------------CQRNY-Q----HN----SPVNTV 130 (311)
T ss_pred -eEEEEEeecCeEEEecCCCceEEEEeccCcc-------------------------cchhc-c----CC----CCcceE
Confidence 22233 357999999999888877543211 00000 0 00 000000
Q ss_pred eccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEeCCCCE
Q 046828 331 YQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRA-HTSPISALCFDRSGTLLVTASIHGNN 409 (627)
Q Consensus 331 ~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~a-H~~~Is~laFspdG~lLaTaS~dGt~ 409 (627)
-..+++ ++...++++|.|+|||+.+....+.+.+ -..+|.+|+..|||++|+.+-.+|+
T Consensus 131 -----------vlhpnQ--------teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~- 190 (311)
T KOG0315|consen 131 -----------VLHPNQ--------TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN- 190 (311)
T ss_pred -----------EecCCc--------ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCcc-
Confidence 000111 1223578999999999998876666554 3568999999999999999999998
Q ss_pred EEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC-CCeeecc
Q 046828 410 INIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF-GGETVLQ 488 (627)
Q Consensus 410 I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~-gg~~~~~ 488 (627)
..||++.. +.. .+....+.++ +-|+ .-|..+-||||+++||++|.|.|++||+++.+ ..+..++
T Consensus 191 cyvW~l~~-------~~~------~s~l~P~~k~-~ah~-~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~ 255 (311)
T KOG0315|consen 191 CYVWRLLN-------HQT------ASELEPVHKF-QAHN-GHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT 255 (311)
T ss_pred EEEEEccC-------CCc------cccceEhhhe-eccc-ceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee
Confidence 79999962 110 1122334444 2232 23899999999999999999999999999988 5666677
Q ss_pred cccc
Q 046828 489 IQNS 492 (627)
Q Consensus 489 ~h~s 492 (627)
.|+.
T Consensus 256 gh~r 259 (311)
T KOG0315|consen 256 GHQR 259 (311)
T ss_pred cCCc
Confidence 7754
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.78 E-value=3.9e-17 Score=181.42 Aligned_cols=191 Identities=20% Similarity=0.273 Sum_probs=148.8
Q ss_pred CCcEEEEEECCCCc--eEEEEe-cCCeEEEEEecC--cEEEEEeCC-eEEEEeC-CCCceeEEEEcCCCCCCCCCCCcCc
Q 046828 178 SPTAVRFYSLRSHN--YVHVLR-FRSTVYMVRCSP--RIVAVGLAA-QIYCFDA-LTLESKFSVLTYPVPHFGGQGTSGV 250 (627)
Q Consensus 178 ~~~tV~lwdl~t~~--~V~tL~-f~s~V~sV~~s~--~~LaV~~~~-~I~i~D~-~t~e~~~tl~~~p~~~~~~~g~~~~ 250 (627)
.++++++|++.+.+ ..+++. +...|.+++|++ ++|+.+..+ +|+|||+ ..+..++++.+|+..
T Consensus 179 ~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~---------- 248 (456)
T KOG0266|consen 179 SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY---------- 248 (456)
T ss_pred CCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCc----------
Confidence 35789999998887 777774 555999999997 677777654 8999999 556888999999765
Q ss_pred ccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeee
Q 046828 251 NIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRY 330 (627)
Q Consensus 251 ~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y 330 (627)
+..+ +|.+... + +
T Consensus 249 ---v~~~-------~f~p~g~----------------------------~--------------------------i--- 261 (456)
T KOG0266|consen 249 ---VTSV-------AFSPDGN----------------------------L--------------------------L--- 261 (456)
T ss_pred ---eEEE-------EecCCCC----------------------------E--------------------------E---
Confidence 2223 3333110 0 0
Q ss_pred eccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEE
Q 046828 331 YQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNI 410 (627)
Q Consensus 331 ~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I 410 (627)
.+++.|++|+|||+.+++++..+.+|..+|++++|++||.+|+++|.||. |
T Consensus 262 ----------------------------~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~-i 312 (456)
T KOG0266|consen 262 ----------------------------VSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT-I 312 (456)
T ss_pred ----------------------------EEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc-E
Confidence 13568999999999999999999999999999999999999999999997 8
Q ss_pred EEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC-cEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccc
Q 046828 411 NIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA-VIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQI 489 (627)
Q Consensus 411 ~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a-~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~ 489 (627)
+|||+. ++. ..+.+...+.... .+..+.|+|++++|++++.|+++++|++...........
T Consensus 313 ~vwd~~-------~~~-----------~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~ 374 (456)
T KOG0266|consen 313 RVWDLE-------TGS-----------KLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG 374 (456)
T ss_pred EEEECC-------CCc-----------eeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc
Confidence 999986 331 0123333455555 699999999999999999999999999987665556666
Q ss_pred ccc
Q 046828 490 QNS 492 (627)
Q Consensus 490 h~s 492 (627)
|..
T Consensus 375 ~~~ 377 (456)
T KOG0266|consen 375 HSN 377 (456)
T ss_pred cCC
Confidence 644
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=8e-18 Score=173.37 Aligned_cols=184 Identities=15% Similarity=0.198 Sum_probs=147.0
Q ss_pred cEEEEEECCC-CceEEEEecCC-eEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 180 TAVRFYSLRS-HNYVHVLRFRS-TVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 180 ~tV~lwdl~t-~~~V~tL~f~s-~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
-.+++||..+ .++++++..++ .|-+|.|-| +.|+++. +..|+.||..|+.+++++.+|+-. +
T Consensus 172 l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ew-------------v 238 (406)
T KOG0295|consen 172 LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEW-------------V 238 (406)
T ss_pred cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHh-------------E
Confidence 3499999987 67788776554 788888876 7777776 557999999999999999776542 3
Q ss_pred ceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 255 GPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 255 ~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
..+.+.. +.+|
T Consensus 239 r~v~v~~DGti~A------------------------------------------------------------------- 251 (406)
T KOG0295|consen 239 RMVRVNQDGTIIA------------------------------------------------------------------- 251 (406)
T ss_pred EEEEecCCeeEEE-------------------------------------------------------------------
Confidence 3333311 1111
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCC---------------C
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRS---------------G 397 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspd---------------G 397 (627)
+++.|.+|++|-+.++++...++.|..||-+++|-|. |
T Consensus 252 ---------------------------s~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~ 304 (406)
T KOG0295|consen 252 ---------------------------SCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGG 304 (406)
T ss_pred ---------------------------ecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCc
Confidence 3457789999999999999999999999999999875 4
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 398 TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 398 ~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
.+|+++|.|++ |++||+. +| .+|.+| -||.+ .|.+++|+|-|+||+++.+|+|+|||+
T Consensus 305 ~~l~s~SrDkt-Ik~wdv~-------tg------------~cL~tL-~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwd 362 (406)
T KOG0295|consen 305 QVLGSGSRDKT-IKIWDVS-------TG------------MCLFTL-VGHDN-WVRGVAFSPGGKYILSCADDKTLRVWD 362 (406)
T ss_pred cEEEeecccce-EEEEecc-------CC------------eEEEEE-ecccc-eeeeeEEcCCCeEEEEEecCCcEEEEE
Confidence 69999999998 8999995 34 488888 68876 599999999999999999999999999
Q ss_pred cCCCCCeeecccccc
Q 046828 478 LTPFGGETVLQIQNS 492 (627)
Q Consensus 478 i~~~gg~~~~~~h~s 492 (627)
++......++..|.-
T Consensus 363 l~~~~cmk~~~ah~h 377 (406)
T KOG0295|consen 363 LKNLQCMKTLEAHEH 377 (406)
T ss_pred eccceeeeccCCCcc
Confidence 998777766666643
No 24
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.77 E-value=4.4e-16 Score=184.13 Aligned_cols=179 Identities=16% Similarity=0.185 Sum_probs=132.3
Q ss_pred CcEEEEEECCCCceEEEEec-CCeEEEEEecC---cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP---RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~---~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~ 253 (627)
+++|+|||+.+++.+.+++. ...|++|+|++ .+|+++. ++.|++||+.+++.+.++..+..
T Consensus 554 Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~-------------- 619 (793)
T PLN00181 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN-------------- 619 (793)
T ss_pred CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCC--------------
Confidence 47899999999999999974 45899999985 5777765 56899999999988777754311
Q ss_pred cceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecc
Q 046828 254 YGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQD 333 (627)
Q Consensus 254 ~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~ 333 (627)
+. .+++.+.+ +..
T Consensus 620 v~-------~v~~~~~~---------------------------g~~--------------------------------- 632 (793)
T PLN00181 620 IC-------CVQFPSES---------------------------GRS--------------------------------- 632 (793)
T ss_pred eE-------EEEEeCCC---------------------------CCE---------------------------------
Confidence 11 12222110 000
Q ss_pred ccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe-EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEE
Q 046828 334 FIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS-VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINI 412 (627)
Q Consensus 334 ~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~-~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~V 412 (627)
+ +.++.||.|++||+.+.+ .+..+.+|..+|.+++|. ++.+|+|++.||+ |+|
T Consensus 633 --------------------l----atgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-iki 686 (793)
T PLN00181 633 --------------------L----AFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKL 686 (793)
T ss_pred --------------------E----EEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEE
Confidence 0 124578999999998765 577889999999999997 7889999999998 899
Q ss_pred EeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 413 FRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 413 wdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
||+.... .+. ....+..+ .||+. .|..++|++++++||+++.|++|+||+..
T Consensus 687 Wd~~~~~----~~~---------~~~~l~~~-~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 687 WDLSMSI----SGI---------NETPLHSF-MGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred EeCCCCc----ccc---------CCcceEEE-cCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 9985211 000 00134444 57754 58999999999999999999999999965
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=1.3e-16 Score=176.30 Aligned_cols=227 Identities=19% Similarity=0.300 Sum_probs=162.2
Q ss_pred eEEEEeccC--cEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 82 HVLLLGYSN--GFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 82 ~vl~~Gy~~--G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
.-+++|+.+ .+-||+.....=+.+..+ |--.+.++++.|.. -+||. ++
T Consensus 320 DWiA~g~~klgQLlVweWqsEsYVlKQQg-H~~~i~~l~YSpDg-------------q~iaT-G~--------------- 369 (893)
T KOG0291|consen 320 DWIAFGCSKLGQLLVWEWQSESYVLKQQG-HSDRITSLAYSPDG-------------QLIAT-GA--------------- 369 (893)
T ss_pred CEEEEcCCccceEEEEEeeccceeeeccc-cccceeeEEECCCC-------------cEEEe-cc---------------
Confidence 356666666 688999987543333222 33445677776643 34432 11
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cE-EEEEeCCeEEEEeCCCCceeEEEE
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RI-VAVGLAAQIYCFDALTLESKFSVL 235 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~-LaV~~~~~I~i~D~~t~e~~~tl~ 235 (627)
.+++|+|||..+|-++.|+. +.+.|..|.|+. +. |..+++++|+.||+.-.++-+++.
T Consensus 370 ------------------eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft 431 (893)
T KOG0291|consen 370 ------------------EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT 431 (893)
T ss_pred ------------------CCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeec
Confidence 24789999999999999997 667999999975 44 455689999999999888776664
Q ss_pred cCCCCCCCCCCCcCcccccceeeEcCc-eEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhc
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVGPR-WLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAA 314 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~~r-~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~ 314 (627)
. |.| .+...+|+.|. -|.+++
T Consensus 432 ~-P~p-----------~QfscvavD~sGelV~AG---------------------------------------------- 453 (893)
T KOG0291|consen 432 S-PEP-----------IQFSCVAVDPSGELVCAG---------------------------------------------- 453 (893)
T ss_pred C-CCc-----------eeeeEEEEcCCCCEEEee----------------------------------------------
Confidence 3 443 22334444321 011110
Q ss_pred ceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEEC
Q 046828 315 GLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFD 394 (627)
Q Consensus 315 gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFs 394 (627)
+-..=.|.||++++|+.+-.+.+|.+||.+|+|+
T Consensus 454 ----------------------------------------------~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~ 487 (893)
T KOG0291|consen 454 ----------------------------------------------AQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS 487 (893)
T ss_pred ----------------------------------------------ccceEEEEEEEeecCeeeehhcCCCCcceeeEEc
Confidence 0112258999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEE
Q 046828 395 RSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCH 474 (627)
Q Consensus 395 pdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvh 474 (627)
|+|..||++|=|.| ||+||+... .|+ +...+. ...+..++|+|||+-||+++.||-|-
T Consensus 488 ~~~~~LaS~SWDkT-VRiW~if~s-----~~~-----------vEtl~i-----~sdvl~vsfrPdG~elaVaTldgqIt 545 (893)
T KOG0291|consen 488 PDGSLLASGSWDKT-VRIWDIFSS-----SGT-----------VETLEI-----RSDVLAVSFRPDGKELAVATLDGQIT 545 (893)
T ss_pred cccCeEEeccccce-EEEEEeecc-----Cce-----------eeeEee-----ccceeEEEEcCCCCeEEEEEecceEE
Confidence 99999999999988 899999621 121 122222 23589999999999999999999999
Q ss_pred EEEcCCCC
Q 046828 475 IFVLTPFG 482 (627)
Q Consensus 475 Iw~i~~~g 482 (627)
+|+++.-.
T Consensus 546 f~d~~~~~ 553 (893)
T KOG0291|consen 546 FFDIKEAV 553 (893)
T ss_pred EEEhhhce
Confidence 99997643
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.76 E-value=5.6e-17 Score=171.59 Aligned_cols=196 Identities=19% Similarity=0.302 Sum_probs=137.7
Q ss_pred CcEEEEEECCCCceEEEEec-CCeEEEEEecC--cEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP--RIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~--~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
++.+|||+. .|..+.+|.+ +.||.++++|+ .+|+++ -++++.+||+.+++..+.+.-|..|
T Consensus 256 ~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~-------------- 320 (524)
T KOG0273|consen 256 DGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP-------------- 320 (524)
T ss_pred CcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC--------------
Confidence 477999984 7888889975 56999999997 455555 5778999999999877666554432
Q ss_pred ceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccc
Q 046828 255 GPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDF 334 (627)
Q Consensus 255 ~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~ 334 (627)
++.-.|.-.-
T Consensus 321 ---~lDVdW~~~~------------------------------------------------------------------- 330 (524)
T KOG0273|consen 321 ---ALDVDWQSND------------------------------------------------------------------- 330 (524)
T ss_pred ---ccceEEecCc-------------------------------------------------------------------
Confidence 1111222110
Q ss_pred cCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEe
Q 046828 335 IPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFR 414 (627)
Q Consensus 335 ~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwd 414 (627)
.|+ ..+.||.|+|+-+...+++.+|.+|..+|++|.|+|.|.+|+|+|+||| ++||.
T Consensus 331 ------------------~F~----ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T-lkiWs 387 (524)
T KOG0273|consen 331 ------------------EFA----TSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT-LKIWS 387 (524)
T ss_pred ------------------eEe----ecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCe-eEeee
Confidence 011 2457899999999999999999999999999999999999999999999 79998
Q ss_pred CCCCCCC---------------CCCCCCccccCC---------CCceeEEEEEeecC-------CcCcEEEEEEccCCCE
Q 046828 415 IMPSSSK---------------GRSGSASQTYDW---------TSSHVHLYKLHRGM-------TSAVIQDICFSHYSQW 463 (627)
Q Consensus 415 i~p~~~~---------------~~~g~~~~~~~~---------~~~~~~l~~l~rG~-------t~a~I~sIaFSpDg~~ 463 (627)
....... .++|.... ..+ ....++++...+|. +...|++++|||||++
T Consensus 388 ~~~~~~~~~l~~Hskei~t~~wsp~g~v~~-n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~y 466 (524)
T KOG0273|consen 388 MGQSNSVHDLQAHSKEIYTIKWSPTGPVTS-NPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRY 466 (524)
T ss_pred cCCCcchhhhhhhccceeeEeecCCCCccC-CCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcE
Confidence 6422110 00111100 000 00123344333331 1245999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCC
Q 046828 464 IAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 464 Las~S~dgTvhIw~i~~~gg 483 (627)
||+|+.||.||||++....-
T Consensus 467 lAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 467 LASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred EEecCCCCeeEeccccchhe
Confidence 99999999999999976543
No 27
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=5.5e-17 Score=167.24 Aligned_cols=251 Identities=15% Similarity=0.197 Sum_probs=181.9
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccC-cEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSN-GFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~-G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
+.+.|..+.||.. .++|+.+... .+++||.+..-+....+..|+-.|..+.++|.. ..|
T Consensus 149 Ht~sv~di~~~a~-------Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g-------------d~i 208 (406)
T KOG0295|consen 149 HTDSVFDISFDAS-------GKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG-------------DHI 208 (406)
T ss_pred cccceeEEEEecC-------ccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC-------------Cee
Confidence 3344666666532 3555555444 499999998655667778888889999999874 234
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecC--cEEEEEe
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSP--RIVAVGL 216 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~--~~LaV~~ 216 (627)
+.+. -+++|+.|++.+|.++.++..+ .+|..|+.+. .++|++.
T Consensus 209 lS~s----------------------------------rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s 254 (406)
T KOG0295|consen 209 LSCS----------------------------------RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCS 254 (406)
T ss_pred eecc----------------------------------cccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecC
Confidence 3321 2478999999999999999855 4999999997 6777776
Q ss_pred CC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCC
Q 046828 217 AA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSP 295 (627)
Q Consensus 217 ~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~ 295 (627)
.+ ++++|-+.+++++..+++|..| +-.++ +++.... |.++-++
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~hEh~-------------vEci~-------wap~~~~--------------~~i~~at-- 298 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELREHEHP-------------VECIA-------WAPESSY--------------PSISEAT-- 298 (406)
T ss_pred CCceEEEEEeccchhhhhhhccccc-------------eEEEE-------ecccccC--------------cchhhcc--
Confidence 44 7999999999888888887655 22333 3332100 0000000
Q ss_pred CCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC
Q 046828 296 SNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR 375 (627)
Q Consensus 296 s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~ 375 (627)
|.++ .|.+ ...++.|++|++||+.++
T Consensus 299 ----------------------------------------~~~~-----------~~~~---l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 299 ----------------------------------------GSTN-----------GGQV---LGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred ----------------------------------------CCCC-----------CccE---EEeecccceEEEEeccCC
Confidence 0000 0111 124678999999999999
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEE
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDI 455 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sI 455 (627)
.++.++.+|.+.|..++|+|-|++|+++.+|++ +||||+. +++ +...+. -+ ..-|.++
T Consensus 325 ~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~-------~~~------------cmk~~~-ah-~hfvt~l 382 (406)
T KOG0295|consen 325 MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLK-------NLQ------------CMKTLE-AH-EHFVTSL 382 (406)
T ss_pred eEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEec-------cce------------eeeccC-CC-cceeEEE
Confidence 999999999999999999999999999999998 7999996 232 333332 22 2359999
Q ss_pred EEccCCCEEEEEeCCCeEEEEE
Q 046828 456 CFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 456 aFSpDg~~Las~S~dgTvhIw~ 477 (627)
+|..+.-++++|+-|.|+++|.
T Consensus 383 Dfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 383 DFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ecCCCCceEEeccccceeeeee
Confidence 9999999999999999999996
No 28
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.76 E-value=7.2e-16 Score=165.02 Aligned_cols=328 Identities=16% Similarity=0.200 Sum_probs=207.4
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEee--ecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVS--RRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells--~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
|..=|..++|.- ++.++...|.|+.+.+||=.+++.+-|+-. .|+|.+..+.+.|.. .-
T Consensus 189 HskFV~~VRysP------DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs-------------~~ 249 (603)
T KOG0318|consen 189 HSKFVNCVRYSP------DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS-------------TQ 249 (603)
T ss_pred cccceeeEEECC------CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC-------------ce
Confidence 445577888852 247899999999999999988776667663 578999999998864 23
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEe-----cCcEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRC-----SPRIVA 213 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~-----s~~~La 213 (627)
++.+. .+.+++|||..+.+++.++.+.+.|-+..+ +..+|.
T Consensus 250 ~~T~S----------------------------------aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lIt 295 (603)
T KOG0318|consen 250 FLTVS----------------------------------ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLIT 295 (603)
T ss_pred EEEec----------------------------------CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEE
Confidence 44433 247899999999999999999887655444 347888
Q ss_pred EEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccC-------CCCC
Q 046828 214 VGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLS-------PQSL 284 (627)
Q Consensus 214 V~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~-------~q~~ 284 (627)
|++.+.|-.+++.+++.++++.+|... ...+++++ ..|-.++.+..+..|...+ .+.+
T Consensus 296 VSl~G~in~ln~~d~~~~~~i~GHnK~-------------ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h 362 (603)
T KOG0318|consen 296 VSLSGTINYLNPSDPSVLKVISGHNKS-------------ITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGH 362 (603)
T ss_pred EEcCcEEEEecccCCChhheecccccc-------------eeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccc
Confidence 899999999999999999999998643 44566655 5677777766655432211 1222
Q ss_pred CCCCCCCCCCCCCC--------cccc-------hhhhhhhhhhh---cceeecCCcceeEEee-----eeccc-----cC
Q 046828 285 TPPSVSPSTSPSNG--------NLMA-------RYAVESSKQLA---AGLINLGDMGYKTLSR-----YYQDF-----IP 336 (627)
Q Consensus 285 t~~~~s~~~s~s~g--------s~v~-------~~a~~~~k~l~---~gl~~lg~~g~~~~s~-----y~~~~-----~p 336 (627)
+........+ +++ ..+. .|..+..-.+. .++..+.+-++..+.- ++++. .|
T Consensus 363 ~nqI~~~~~~-~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~ 441 (603)
T KOG0318|consen 363 TNQIKGMAAS-ESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIP 441 (603)
T ss_pred cceEEEEeec-CCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeec
Confidence 2111000000 000 0000 00000000000 0111111100000000 00000 00
Q ss_pred CC---CCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEE
Q 046828 337 DG---SSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS--VISQFRAHTSPISALCFDRSGTLLVTASIHGNNIN 411 (627)
Q Consensus 337 ~g---~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~--~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~ 411 (627)
-+ +..+++++.. ..+-+++||.|+||.+.... .......|..+|++|+|||||++||.++..+. +.
T Consensus 442 ~~y~~s~vAv~~~~~--------~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rk-vv 512 (603)
T KOG0318|consen 442 IGYESSAVAVSPDGS--------EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRK-VV 512 (603)
T ss_pred cccccceEEEcCCCC--------EEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCc-EE
Confidence 00 0011111100 11246799999999998754 44567789999999999999999999999998 68
Q ss_pred EEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 412 IFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 412 Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
+||+. + . ....-+.+.+.|+|.+|+||||.+.||++|.|-+|+||.++.....
T Consensus 513 ~yd~~-s------~-------------~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 513 LYDVA-S------R-------------EVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred EEEcc-c------C-------------ceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence 99986 1 1 1122223445689999999999999999999999999999876544
No 29
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.75 E-value=2.5e-16 Score=159.10 Aligned_cols=262 Identities=15% Similarity=0.151 Sum_probs=183.7
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
..++..|.-+.|.- ++.-++..|+|.-+-+|++..--+-.-.+..|.|.|-=+.+-.. + ..
T Consensus 44 ~gh~geI~~~~F~P------~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d--------~-----s~ 104 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHP------DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRD--------G-----SH 104 (338)
T ss_pred CCCcceEEEEEECC------CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccC--------C-----CE
Confidence 45677788899974 23567889999999999975422223455577777644443322 1 33
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC-eEEEEEec---CcEEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS-TVYMVRCS---PRIVAV 214 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s---~~~LaV 214 (627)
|+-++ .+++|+.||.++|+.+..++.+. -|.++.-+ +.+|.+
T Consensus 105 i~S~g----------------------------------tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~S 150 (338)
T KOG0265|consen 105 ILSCG----------------------------------TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCS 150 (338)
T ss_pred EEEec----------------------------------CCceEEEEecccceeeehhccccceeeecCccccCCeEEEe
Confidence 32221 35899999999999999998665 45555543 367777
Q ss_pred EeC-CeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCC
Q 046828 215 GLA-AQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPST 293 (627)
Q Consensus 215 ~~~-~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~ 293 (627)
+.+ +++++||+++-+.+++++ ++ +...|+ ++....
T Consensus 151 gsdD~t~kl~D~R~k~~~~t~~---~k-------------yqltAv-----~f~d~s----------------------- 186 (338)
T KOG0265|consen 151 GSDDGTLKLWDIRKKEAIKTFE---NK-------------YQLTAV-----GFKDTS----------------------- 186 (338)
T ss_pred cCCCceEEEEeecccchhhccc---cc-------------eeEEEE-----Eecccc-----------------------
Confidence 765 489999999777665542 22 111222 111100
Q ss_pred CCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC
Q 046828 294 SPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV 373 (627)
Q Consensus 294 s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~ 373 (627)
-+.+ ++..|+.|++||+.
T Consensus 187 ------------------------------~qv~--------------------------------sggIdn~ikvWd~r 204 (338)
T KOG0265|consen 187 ------------------------------DQVI--------------------------------SGGIDNDIKVWDLR 204 (338)
T ss_pred ------------------------------ccee--------------------------------eccccCceeeeccc
Confidence 0000 34578999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC---
Q 046828 374 SRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA--- 450 (627)
Q Consensus 374 s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a--- 450 (627)
....+.++.+|..+|..|..+|+|.+|.+-+-|.+ +++||+.|.... .+..+...|+...
T Consensus 205 ~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p~----------------~R~v~if~g~~hnfek 267 (338)
T KOG0265|consen 205 KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAPS----------------QRCVKIFQGHIHNFEK 267 (338)
T ss_pred cCcceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCCC----------------CceEEEeecchhhhhh
Confidence 99999999999999999999999999999999988 799999875421 1333344554432
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccC
Q 046828 451 VIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDR 496 (627)
Q Consensus 451 ~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~ 496 (627)
....++|||+++++..++.|..+++|+....+-.-.+-+|...+..
T Consensus 268 nlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~ 313 (338)
T KOG0265|consen 268 NLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNE 313 (338)
T ss_pred hcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEE
Confidence 1567799999999999999999999999887766667777655443
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=1.4e-16 Score=176.02 Aligned_cols=233 Identities=18% Similarity=0.146 Sum_probs=166.4
Q ss_pred cEEEEEECCCCceEEEEe-cCCeEEEEEecC---cEEEEEeC-CeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 180 TAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP---RIVAVGLA-AQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~---~~LaV~~~-~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
..+.|||.++.+.++.|- ++..|++|+|-. +.|||+.. .++++|+..++.+. .+.+|... +
T Consensus 303 Qnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~-------------v 368 (775)
T KOG0319|consen 303 QNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEA-------------V 368 (775)
T ss_pred ceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhh-------------e
Confidence 459999999999998886 778999999975 89999974 57999999999876 67787542 2
Q ss_pred ceee--EcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 255 GPMA--VGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 255 ~~iA--l~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
..++ -.+.|||.++.+..+.+| |+. .+ -+....++. +.| .-+..|....+.
T Consensus 369 lSL~~~~~g~llat~sKD~svilW-r~~-~~--------------~~~~~~~a~------~~g--H~~svgava~~~--- 421 (775)
T KOG0319|consen 369 LSLDVWSSGDLLATGSKDKSVILW-RLN-NN--------------CSKSLCVAQ------ANG--HTNSVGAVAGSK--- 421 (775)
T ss_pred eeeeecccCcEEEEecCCceEEEE-Eec-CC--------------cchhhhhhh------hcc--cccccceeeecc---
Confidence 2233 234699999999888777 220 00 000000110 000 001111111110
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe---------EEEEeccCCCCeEEEEECCCCCEEEEE
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS---------VISQFRAHTSPISALCFDRSGTLLVTA 403 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~---------~l~~~~aH~~~Is~laFspdG~lLaTa 403 (627)
.+ +....+++.|+++++|++...+ ...+-.+|...|++++.+|+.+++|||
T Consensus 422 ------------------~~--asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~ 481 (775)
T KOG0319|consen 422 ------------------LG--ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATG 481 (775)
T ss_pred ------------------cC--ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEec
Confidence 00 0112356899999999997621 122456899999999999999999999
Q ss_pred eCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 404 SIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 404 S~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
|.|.+ .+||++. . + .++..| +||+.. |+|+.|++..+.||++|.|+||+||.|..+..
T Consensus 482 SqDkt-aKiW~le-~------~------------~l~~vL-sGH~RG-vw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC 539 (775)
T KOG0319|consen 482 SQDKT-AKIWDLE-Q------L------------RLLGVL-SGHTRG-VWCVSFSKNDQLLATCSGDKTVKIWSISTFSC 539 (775)
T ss_pred ccccc-eeeeccc-C------c------------eEEEEe-eCCccc-eEEEEeccccceeEeccCCceEEEEEecccee
Confidence 99988 7999995 2 2 245555 899874 99999999999999999999999999999999
Q ss_pred eeeccccccccc
Q 046828 484 ETVLQIQNSHVD 495 (627)
Q Consensus 484 ~~~~~~h~s~v~ 495 (627)
..++++|.+.|.
T Consensus 540 lkT~eGH~~aVl 551 (775)
T KOG0319|consen 540 LKTFEGHTSAVL 551 (775)
T ss_pred eeeecCccceeE
Confidence 999999987654
No 31
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.75 E-value=1.9e-17 Score=184.12 Aligned_cols=175 Identities=15% Similarity=0.204 Sum_probs=139.4
Q ss_pred eEEEEe-cCCeEEEEEecC--cEEEEEeC-CeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEc
Q 046828 192 YVHVLR-FRSTVYMVRCSP--RIVAVGLA-AQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYA 267 (627)
Q Consensus 192 ~V~tL~-f~s~V~sV~~s~--~~LaV~~~-~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~ 267 (627)
...+|- +..+||.++|+| ++|+++.. ..|++|.+.|..++-...+|-.| ++-+.++||-.
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~P-------------VwdV~F~P~Gy--- 506 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAP-------------VWDVQFAPRGY--- 506 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcc-------------eeeEEecCCce---
Confidence 344555 445999999998 77888765 58999999999988888887655 33344433311
Q ss_pred CCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCC
Q 046828 268 SNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNS 347 (627)
Q Consensus 268 ~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~ 347 (627)
||
T Consensus 507 --------------------------------------------------------------YF---------------- 508 (707)
T KOG0263|consen 507 --------------------------------------------------------------YF---------------- 508 (707)
T ss_pred --------------------------------------------------------------EE----------------
Confidence 22
Q ss_pred ccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCC
Q 046828 348 SWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSA 427 (627)
Q Consensus 348 ~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~ 427 (627)
++++.|++.++|......++..|.+|.+.|.|++|.|+..++||+|.|.| +|+||+. +|
T Consensus 509 -----------atas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~-------~G-- 567 (707)
T KOG0263|consen 509 -----------ATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVS-------TG-- 567 (707)
T ss_pred -----------EecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCce-EEEEEcC-------CC--
Confidence 13457888999999999999999999999999999999999999999988 7999997 34
Q ss_pred ccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccccc
Q 046828 428 SQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSH 493 (627)
Q Consensus 428 ~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~ 493 (627)
...++++||+ +.|.+|+|||+|+|||+++.||.|+|||+........+.+|...
T Consensus 568 -----------~~VRiF~GH~-~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~t 621 (707)
T KOG0263|consen 568 -----------NSVRIFTGHK-GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGT 621 (707)
T ss_pred -----------cEEEEecCCC-CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCc
Confidence 2345558986 57999999999999999999999999999865555567788543
No 32
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.75 E-value=2.7e-17 Score=162.49 Aligned_cols=199 Identities=20% Similarity=0.255 Sum_probs=154.6
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.++|--|--|.|++. ...+|..|.+.-++|||++..+...+=++.|-|.||.+.+.-. |. .
T Consensus 97 f~hkhivk~~af~~d------s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e-------D~------~ 157 (334)
T KOG0278|consen 97 FEHKHIVKAVAFSQD------SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE-------DK------C 157 (334)
T ss_pred hhhhheeeeEEeccc------chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc-------Cc------e
Confidence 556667778999863 3679999999999999999877666667788899988877533 11 2
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL 216 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~ 216 (627)
|+..+ .+++||+||.+|+..|++|+|+++|.++.+++ ++|.++.
T Consensus 158 iLSSa----------------------------------dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~ 203 (334)
T KOG0278|consen 158 ILSSA----------------------------------DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY 203 (334)
T ss_pred EEeec----------------------------------cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec
Confidence 22111 24789999999999999999999999999987 8999999
Q ss_pred CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCC
Q 046828 217 AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPS 296 (627)
Q Consensus 217 ~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s 296 (627)
...|..||+.+++.+.... .|. | +..-+|.|.
T Consensus 204 gssV~Fwdaksf~~lKs~k---~P~---------n--V~SASL~P~---------------------------------- 235 (334)
T KOG0278|consen 204 GSSVKFWDAKSFGLLKSYK---MPC---------N--VESASLHPK---------------------------------- 235 (334)
T ss_pred CceeEEeccccccceeecc---Ccc---------c--cccccccCC----------------------------------
Confidence 8999999999998775543 230 0 111111110
Q ss_pred CCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe
Q 046828 297 NGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS 376 (627)
Q Consensus 297 ~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~ 376 (627)
.+.+ ..+++|+.+..||..++.
T Consensus 236 ------------------------------------------------------k~~f----VaGged~~~~kfDy~Tge 257 (334)
T KOG0278|consen 236 ------------------------------------------------------KEFF----VAGGEDFKVYKFDYNTGE 257 (334)
T ss_pred ------------------------------------------------------CceE----EecCcceEEEEEeccCCc
Confidence 0001 145789999999999999
Q ss_pred EEEEe-ccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCC
Q 046828 377 VISQF-RAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMP 417 (627)
Q Consensus 377 ~l~~~-~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p 417 (627)
.+..+ ++|-+||-||.|+|||.+-|++|+||+ ||+|++.|
T Consensus 258 Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt~~ 298 (334)
T KOG0278|consen 258 EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT-IRLWQTTP 298 (334)
T ss_pred eeeecccCCCCceEEEEECCCCceeeccCCCce-EEEEEecC
Confidence 88886 899999999999999999999999999 89999864
No 33
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.74 E-value=6.2e-16 Score=155.01 Aligned_cols=227 Identities=12% Similarity=0.176 Sum_probs=160.1
Q ss_pred CCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeecc
Q 046828 79 SFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVG 158 (627)
Q Consensus 79 ~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~ 158 (627)
++...|..++|+.+++||++.+. -...+-.|.--|-.++|.++. .-| |+
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~-~t~~f~GH~~dVlsva~s~dn-------------~qi--vS--------------- 122 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGE-STRRFVGHTKDVLSVAFSTDN-------------RQI--VS--------------- 122 (315)
T ss_pred CCceEEeccccceEEEEEecCCc-EEEEEEecCCceEEEEecCCC-------------cee--ec---------------
Confidence 45778999999999999999864 455666676667777776543 121 32
Q ss_pred CcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec--CCeEEEEEecCc----EEEEEe-CCeEEEEeCCCCcee
Q 046828 159 RDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF--RSTVYMVRCSPR----IVAVGL-AAQIYCFDALTLESK 231 (627)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f--~s~V~sV~~s~~----~LaV~~-~~~I~i~D~~t~e~~ 231 (627)
|+ -++++++|+...+......+. +.+|.+|+|+|+ +|+.+. +..|++||+.+.+..
T Consensus 123 -------GS----------rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~ 185 (315)
T KOG0279|consen 123 -------GS----------RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR 185 (315)
T ss_pred -------CC----------CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh
Confidence 11 248999999987655544443 679999999984 566665 557999999999988
Q ss_pred EEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhh
Q 046828 232 FSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQ 311 (627)
Q Consensus 232 ~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~ 311 (627)
+++.+|..- ++.+++ +++
T Consensus 186 ~~~~gh~~~-------------v~t~~v-------SpD------------------------------------------ 203 (315)
T KOG0279|consen 186 TTFIGHSGY-------------VNTVTV-------SPD------------------------------------------ 203 (315)
T ss_pred hcccccccc-------------EEEEEE-------CCC------------------------------------------
Confidence 777665321 222333 221
Q ss_pred hhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEE
Q 046828 312 LAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISAL 391 (627)
Q Consensus 312 l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~l 391 (627)
|+ ..++++.||.+.+||+..++.+..+. |..+|.++
T Consensus 204 --------------------------Gs-----------------lcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl 239 (315)
T KOG0279|consen 204 --------------------------GS-----------------LCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSL 239 (315)
T ss_pred --------------------------CC-----------------EEecCCCCceEEEEEccCCceeEecc-CCCeEeeE
Confidence 10 00145789999999999999876665 67899999
Q ss_pred EECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe---ecC--C--cCcEEEEEEccCCCEE
Q 046828 392 CFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH---RGM--T--SAVIQDICFSHYSQWI 464 (627)
Q Consensus 392 aFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~---rG~--t--~a~I~sIaFSpDg~~L 464 (627)
+|+|+--.|+.|-.. .|+|||+++.. .+.+|+ -|. . ...-.+++||+||+.|
T Consensus 240 ~fspnrywL~~at~~--sIkIwdl~~~~-------------------~v~~l~~d~~g~s~~~~~~~clslaws~dG~tL 298 (315)
T KOG0279|consen 240 CFSPNRYWLCAATAT--SIKIWDLESKA-------------------VVEELKLDGIGPSSKAGDPICLSLAWSADGQTL 298 (315)
T ss_pred EecCCceeEeeccCC--ceEEEeccchh-------------------hhhhccccccccccccCCcEEEEEEEcCCCcEE
Confidence 999999888887755 48999997321 111111 121 1 1124567999999999
Q ss_pred EEEeCCCeEEEEEcCC
Q 046828 465 AIVSSRGTCHIFVLTP 480 (627)
Q Consensus 465 as~S~dgTvhIw~i~~ 480 (627)
..+-.|+.|++|.+..
T Consensus 299 f~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 299 FAGYTDNVIRVWQVAK 314 (315)
T ss_pred EeeecCCcEEEEEeec
Confidence 9999999999999864
No 34
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.73 E-value=4e-16 Score=175.24 Aligned_cols=231 Identities=14% Similarity=0.153 Sum_probs=175.0
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
+.+....+++.+++||+.+...+..-+..|.|.|..+++.-.- ++|. . |
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~-------------~~lv--s-------g--------- 267 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGG-------------DKLV--S-------G--------- 267 (537)
T ss_pred CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCC-------------CEEE--E-------E---------
Confidence 5677777888899999998665444366799999998885211 3442 2 1
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecCcEEEEE-eCCeEEEEeCCCCceeEEEEcCC
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSPRIVAVG-LAAQIYCFDALTLESKFSVLTYP 238 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p 238 (627)
..+.++++||+.+|++++++. +.+.|+.+..-+.+++.| .+.+|++||+.++.+++++.+|.
T Consensus 268 ----------------S~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~ 331 (537)
T KOG0274|consen 268 ----------------STDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHT 331 (537)
T ss_pred ----------------ecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEecccc
Confidence 124889999999999999999 556888888888777775 56789999999999999988765
Q ss_pred CCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceee
Q 046828 239 VPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLIN 318 (627)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~ 318 (627)
.+ +..+.++...|
T Consensus 332 ~~-------------V~~v~~~~~~l------------------------------------------------------ 344 (537)
T KOG0274|consen 332 GP-------------VNCVQLDEPLL------------------------------------------------------ 344 (537)
T ss_pred cc-------------EEEEEecCCEE------------------------------------------------------
Confidence 44 22332211000
Q ss_pred cCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCC
Q 046828 319 LGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGT 398 (627)
Q Consensus 319 lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~ 398 (627)
.++..||+|+|||+.++++++.+.+|+..|.++.|++. .
T Consensus 345 ----------------------------------------vsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~ 383 (537)
T KOG0274|consen 345 ----------------------------------------VSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-N 383 (537)
T ss_pred ----------------------------------------EEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-c
Confidence 02457899999999999999999999999999999876 8
Q ss_pred EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 399 LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 399 lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
.+.+||.|++ |++||+. . .. .+++.+ .|++ +.|.++ ...+++|.+++.|++|++||.
T Consensus 384 ~~~Sgs~D~~-IkvWdl~-~------~~-----------~c~~tl-~~h~-~~v~~l--~~~~~~Lvs~~aD~~Ik~WD~ 440 (537)
T KOG0274|consen 384 RLLSGSLDTT-IKVWDLR-T------KR-----------KCIHTL-QGHT-SLVSSL--LLRDNFLVSSSADGTIKLWDA 440 (537)
T ss_pred eEEeeeeccc-eEeecCC-c------hh-----------hhhhhh-cCCc-cccccc--ccccceeEeccccccEEEeec
Confidence 9999999987 8999986 2 20 134444 4554 345444 446779999999999999999
Q ss_pred CCCCCeeeccc
Q 046828 479 TPFGGETVLQI 489 (627)
Q Consensus 479 ~~~gg~~~~~~ 489 (627)
+..+....+.+
T Consensus 441 ~~~~~~~~~~~ 451 (537)
T KOG0274|consen 441 EEGECLRTLEG 451 (537)
T ss_pred ccCceeeeecc
Confidence 99888777776
No 35
>PTZ00421 coronin; Provisional
Probab=99.72 E-value=5.3e-15 Score=165.33 Aligned_cols=222 Identities=14% Similarity=0.146 Sum_probs=151.0
Q ss_pred CcEEEEecCCCCCceE---EeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCC
Q 046828 90 NGFQVLDVEDATNVSE---LVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDG 166 (627)
Q Consensus 90 ~G~qVWdv~~~~~~~e---lls~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g 166 (627)
+|+.|+.++..+.... ++..|.++|..+.+.|.- . .+|+..+
T Consensus 51 gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d-------~-----~~LaSgS----------------------- 95 (493)
T PTZ00421 51 GSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD-------P-----QKLFTAS----------------------- 95 (493)
T ss_pred CceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCC-------C-----CEEEEEe-----------------------
Confidence 4455555554443222 567789999999987621 0 3454322
Q ss_pred CCCCCCCCCCcCCcEEEEEECCCC-------ceEEEEec-CCeEEEEEecC---cEEEEEe-CCeEEEEeCCCCceeEEE
Q 046828 167 YDEPQPGNVAMSPTAVRFYSLRSH-------NYVHVLRF-RSTVYMVRCSP---RIVAVGL-AAQIYCFDALTLESKFSV 234 (627)
Q Consensus 167 ~~~~~~~~~~~~~~tV~lwdl~t~-------~~V~tL~f-~s~V~sV~~s~---~~LaV~~-~~~I~i~D~~t~e~~~tl 234 (627)
.+++|++||+.++ +.+.+|.. ...|..|+|++ .+|+++. ++.|+|||+.+++.+.++
T Consensus 96 -----------~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l 164 (493)
T PTZ00421 96 -----------EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI 164 (493)
T ss_pred -----------CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE
Confidence 2478999999875 35677774 45999999987 4777765 668999999999988888
Q ss_pred EcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhc
Q 046828 235 LTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAA 314 (627)
Q Consensus 235 ~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~ 314 (627)
.+|..+ +.. |++.++...
T Consensus 165 ~~h~~~-------------V~s-------la~spdG~l------------------------------------------ 182 (493)
T PTZ00421 165 KCHSDQ-------------ITS-------LEWNLDGSL------------------------------------------ 182 (493)
T ss_pred cCCCCc-------------eEE-------EEEECCCCE------------------------------------------
Confidence 776543 222 333321100
Q ss_pred ceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCC-eEEEEE
Q 046828 315 GLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSP-ISALCF 393 (627)
Q Consensus 315 gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~-Is~laF 393 (627)
+ +.++.||.|+|||+.+++.+..+.+|... +..+.|
T Consensus 183 ---------------------------------------L----atgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w 219 (493)
T PTZ00421 183 ---------------------------------------L----CTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLW 219 (493)
T ss_pred ---------------------------------------E----EEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEE
Confidence 0 12457899999999999999999999875 456789
Q ss_pred CCCCCEEEEEe----CCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe-
Q 046828 394 DRSGTLLVTAS----IHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS- 468 (627)
Q Consensus 394 spdG~lLaTaS----~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S- 468 (627)
.+++.+|++++ .|++ |+|||+. . .. ..+..........+....|++|+++|++++
T Consensus 220 ~~~~~~ivt~G~s~s~Dr~-VklWDlr-~------~~------------~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk 279 (493)
T PTZ00421 220 AKRKDLIITLGCSKSQQRQ-IMLWDTR-K------MA------------SPYSTVDLDQSSALFIPFFDEDTNLLYIGSK 279 (493)
T ss_pred cCCCCeEEEEecCCCCCCe-EEEEeCC-C------CC------------CceeEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence 99988887764 4676 8999985 2 11 111111222223466778999999999987
Q ss_pred CCCeEEEEEcCCCC
Q 046828 469 SRGTCHIFVLTPFG 482 (627)
Q Consensus 469 ~dgTvhIw~i~~~g 482 (627)
.|++|++|++....
T Consensus 280 gDg~Iriwdl~~~~ 293 (493)
T PTZ00421 280 GEGNIRCFELMNER 293 (493)
T ss_pred CCCeEEEEEeeCCc
Confidence 59999999998643
No 36
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.72 E-value=5.1e-15 Score=163.82 Aligned_cols=216 Identities=19% Similarity=0.236 Sum_probs=154.2
Q ss_pred CcEEEEEECCCCceEEEEecC-CeEEEEEec--CcEEEEEeCC--eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFR-STVYMVRCS--PRIVAVGLAA--QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s--~~~LaV~~~~--~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~ 253 (627)
.+...+|.+-.-.+||.|.-. .+|..+.+| .+.||++... ++-||+.++-.-+....+|...
T Consensus 286 sG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~------------- 352 (893)
T KOG0291|consen 286 SGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDR------------- 352 (893)
T ss_pred CCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccc-------------
Confidence 366889999999999999965 699999998 5999999876 8999998875444444444321
Q ss_pred cceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecc
Q 046828 254 YGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQD 333 (627)
Q Consensus 254 ~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~ 333 (627)
+ ..+||.++...
T Consensus 353 ---i----~~l~YSpDgq~------------------------------------------------------------- 364 (893)
T KOG0291|consen 353 ---I----TSLAYSPDGQL------------------------------------------------------------- 364 (893)
T ss_pred ---e----eeEEECCCCcE-------------------------------------------------------------
Confidence 2 24677764211
Q ss_pred ccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEE
Q 046828 334 FIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIF 413 (627)
Q Consensus 334 ~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vw 413 (627)
+ +.+.+||.|+|||..++-++.+|..|++.|+++.|+.+|..|+++|-||| +|.|
T Consensus 365 --------------------i----aTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGt-VRAw 419 (893)
T KOG0291|consen 365 --------------------I----ATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGT-VRAW 419 (893)
T ss_pred --------------------E----EeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCe-EEee
Confidence 0 13568999999999999999999999999999999999999999999999 7999
Q ss_pred eCCCCCCCC----------------CCCCCccccCCCCceeEEEEEe--------ecCCcCcEEEEEEccCCCEEEEEeC
Q 046828 414 RIMPSSSKG----------------RSGSASQTYDWTSSHVHLYKLH--------RGMTSAVIQDICFSHYSQWIAIVSS 469 (627)
Q Consensus 414 di~p~~~~~----------------~~g~~~~~~~~~~~~~~l~~l~--------rG~t~a~I~sIaFSpDg~~Las~S~ 469 (627)
|+.....-. ++|.-..++....---.++.++ .||. +.|.+|+|+|++..||++|-
T Consensus 420 DlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHE-gPVs~l~f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 420 DLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHE-GPVSGLSFSPDGSLLASGSW 498 (893)
T ss_pred eecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCC-CcceeeEEccccCeEEeccc
Confidence 987321000 0011001111111112333343 4554 46999999999999999999
Q ss_pred CCeEEEEEcCCCCCeeecccccccccCCCCCC
Q 046828 470 RGTCHIFVLTPFGGETVLQIQNSHVDRPTLSP 501 (627)
Q Consensus 470 dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p 501 (627)
|.||++|++-...+.+..-.+.+.+.+..+.|
T Consensus 499 DkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP 530 (893)
T KOG0291|consen 499 DKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP 530 (893)
T ss_pred cceEEEEEeeccCceeeeEeeccceeEEEEcC
Confidence 99999999977655554444555554433333
No 37
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.71 E-value=8.3e-17 Score=165.81 Aligned_cols=273 Identities=15% Similarity=0.185 Sum_probs=182.8
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCC----cCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEG----FRN 134 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~----f~~ 134 (627)
+.|+|.|....= ++.....|+.+++|+.+++||++... ....+-.|+|+|+=+.+--+-...-+.|. +..
T Consensus 63 ~gHrdGV~~lak-----hp~~ls~~aSGs~DG~VkiWnlsqR~-~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 63 DGHRDGVSCLAK-----HPNKLSTVASGSCDGEVKIWNLSQRE-CIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKI 136 (433)
T ss_pred cccccccchhhc-----CcchhhhhhccccCceEEEEehhhhh-hhheeecccCceeeEEecccceEEecCCcceeeeec
Confidence 668888876332 33334668999999999999999854 35667789999987766432211111121 221
Q ss_pred CCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCC--cEEEEEECCCCceEEEEecCC-eEEEEEecC--
Q 046828 135 SHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSP--TAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP-- 209 (627)
Q Consensus 135 ~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~-- 209 (627)
..|.+=...|++.- .| .+-.| .+..|.. ..|.|||.....++.+++... .|.+|.||+
T Consensus 137 ~~~p~~tilg~s~~-~g------------Idh~~----~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE 199 (433)
T KOG0268|consen 137 DGPPLHTILGKSVY-LG------------IDHHR----KNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVE 199 (433)
T ss_pred cCCcceeeeccccc-cc------------ccccc----ccccccccCceeeecccccCCccceeecCCCceeEEecCCCc
Confidence 11221111111110 00 11111 0112222 349999999999999999765 899999998
Q ss_pred -cEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCC
Q 046828 210 -RIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPP 287 (627)
Q Consensus 210 -~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~ 287 (627)
.+|+++ .+..|.+||+++...++.+....- ++.|+++| =||.
T Consensus 200 TsILas~~sDrsIvLyD~R~~~Pl~KVi~~mR--------------TN~IswnP--eafn-------------------- 243 (433)
T KOG0268|consen 200 TSILASCASDRSIVLYDLRQASPLKKVILTMR--------------TNTICWNP--EAFN-------------------- 243 (433)
T ss_pred chheeeeccCCceEEEecccCCccceeeeecc--------------ccceecCc--cccc--------------------
Confidence 788888 566899999999887766543111 12233322 1110
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeE
Q 046828 288 SVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMV 367 (627)
Q Consensus 288 ~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V 367 (627)
| ..+.+|-.+
T Consensus 244 ------------------------------------------------------------------F----~~a~ED~nl 253 (433)
T KOG0268|consen 244 ------------------------------------------------------------------F----VAANEDHNL 253 (433)
T ss_pred ------------------------------------------------------------------e----eeccccccc
Confidence 0 135678888
Q ss_pred EEEECCCC-eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeec
Q 046828 368 VVKDIVSR-SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRG 446 (627)
Q Consensus 368 ~IwD~~s~-~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG 446 (627)
..+|+... +++..++.|.+.|..+.|||.|+-+++||-|.+ ||||... ..+. +.+|.-+|
T Consensus 254 Y~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks-IRIf~~~-~~~S----------------RdiYhtkR- 314 (433)
T KOG0268|consen 254 YTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS-IRIFPVN-HGHS----------------RDIYHTKR- 314 (433)
T ss_pred eehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce-EEEeecC-CCcc----------------hhhhhHhh-
Confidence 88998876 578889999999999999999999999999987 8999985 2211 23443322
Q ss_pred CCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 447 MTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 447 ~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
+ ..|.++.||.|++|+.+||+|+.|++|.-+..
T Consensus 315 M--q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 315 M--QHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred h--heeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 2 34999999999999999999999999997654
No 38
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.7e-14 Score=146.91 Aligned_cols=242 Identities=14% Similarity=0.173 Sum_probs=162.6
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
....|.-..|+. .+..+++...++.+|+||+.++..++.+-+.+-|. -.+++.-.+ --+
T Consensus 13 ~~~~i~sl~fs~------~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~-~~~~Fth~~--------------~~~ 71 (311)
T KOG1446|consen 13 TNGKINSLDFSD------DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGV-DLACFTHHS--------------NTV 71 (311)
T ss_pred CCCceeEEEecC------CCCEEEEecCCCeEEEEEcCCCceeeEeecccccc-cEEEEecCC--------------ceE
Confidence 467888888863 23556665667799999999988766666665554 444543222 112
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecC---cEEEEEe
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSP---RIVAVGL 216 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~---~~LaV~~ 216 (627)
+.+ ++ -.+.+||.-|+.+.++|+.+..+ ..|.++.++| .+|.+++
T Consensus 72 i~s--St-----------------------------k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~ 120 (311)
T KOG1446|consen 72 IHS--ST-----------------------------KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSL 120 (311)
T ss_pred EEc--cC-----------------------------CCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEeccc
Confidence 221 10 01378999999999999999855 5999999998 4666678
Q ss_pred CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCC
Q 046828 217 AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPS 296 (627)
Q Consensus 217 ~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s 296 (627)
|++|++||+++-++...+.-... +..|++|.-|-++.
T Consensus 121 D~tvrLWDlR~~~cqg~l~~~~~---------------pi~AfDp~GLifA~---------------------------- 157 (311)
T KOG1446|consen 121 DKTVRLWDLRVKKCQGLLNLSGR---------------PIAAFDPEGLIFAL---------------------------- 157 (311)
T ss_pred CCeEEeeEecCCCCceEEecCCC---------------cceeECCCCcEEEE----------------------------
Confidence 88999999998776655432211 12334332222211
Q ss_pred CCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC-
Q 046828 297 NGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR- 375 (627)
Q Consensus 297 ~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~- 375 (627)
+...+.|+|||+++-
T Consensus 158 ----------------------------------------------------------------~~~~~~IkLyD~Rs~d 173 (311)
T KOG1446|consen 158 ----------------------------------------------------------------ANGSELIKLYDLRSFD 173 (311)
T ss_pred ----------------------------------------------------------------ecCCCeEEEEEecccC
Confidence 112238899998864
Q ss_pred -eEEEEec---cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCc
Q 046828 376 -SVISQFR---AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAV 451 (627)
Q Consensus 376 -~~l~~~~---aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~ 451 (627)
.+-..|. +-....+.|.|||||+.|......+. ++|.|.. +|. .+..+ .++.++.
T Consensus 174 kgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~~lDAf-------~G~------------~~~tf-s~~~~~~ 232 (311)
T KOG1446|consen 174 KGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IYLLDAF-------DGT------------VKSTF-SGYPNAG 232 (311)
T ss_pred CCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EEEEEcc-------CCc------------EeeeE-eeccCCC
Confidence 2333443 33567999999999999999888886 7899975 442 22222 2222221
Q ss_pred --EEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 452 --IQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 452 --I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
--+-+|+|||+++.++++||+||+|+++...
T Consensus 233 ~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 233 NLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred CcceeEEECCCCcEEEEecCCCcEEEEEcCCCc
Confidence 2567899999999999999999999996543
No 39
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.71 E-value=1e-16 Score=167.10 Aligned_cols=240 Identities=15% Similarity=0.210 Sum_probs=174.9
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 58 SHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 58 ~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
..+.|-.|--++|- .++|++++..+.+-|.+|+.... +++.++..||.+||+++++++- -
T Consensus 92 ~NKvkc~V~~v~Wt------PeGRRLltgs~SGEFtLWNg~~f-nFEtilQaHDs~Vr~m~ws~~g-------------~ 151 (464)
T KOG0284|consen 92 SNKVKCPVNVVRWT------PEGRRLLTGSQSGEFTLWNGTSF-NFETILQAHDSPVRTMKWSHNG-------------T 151 (464)
T ss_pred ccccccceeeEEEc------CCCceeEeecccccEEEecCcee-eHHHHhhhhcccceeEEEccCC-------------C
Confidence 34555555555552 25689999998999999998653 4677888999999999998763 1
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cC-CeEEEEEecC--cEEE
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FR-STVYMVRCSP--RIVA 213 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~-s~V~sV~~s~--~~La 213 (627)
. + +++|. .++|++|+..-. .|+.++ ++ ..|++++|++ ...+
T Consensus 152 w-m-iSgD~--------------------------------gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~ 196 (464)
T KOG0284|consen 152 W-M-ISGDK--------------------------------GGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFL 196 (464)
T ss_pred E-E-EEcCC--------------------------------CceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeE
Confidence 2 2 33322 267999997544 445554 44 5899999998 3444
Q ss_pred E-EeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 214 V-GLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 214 V-~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
+ +.++.|+|||....+....|.+|.-- + +-+++-+.+
T Consensus 197 t~SdDg~ikiWdf~~~kee~vL~GHgwd-------------V-------ksvdWHP~k---------------------- 234 (464)
T KOG0284|consen 197 TCSDDGTIKIWDFRMPKEERVLRGHGWD-------------V-------KSVDWHPTK---------------------- 234 (464)
T ss_pred EecCCCeEEEEeccCCchhheeccCCCC-------------c-------ceeccCCcc----------------------
Confidence 4 45668999999988877777665311 1 122222211
Q ss_pred CCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI 372 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~ 372 (627)
.+ + ++++.|..|++||.
T Consensus 235 ------------------gL-----------------------------------------i----asgskDnlVKlWDp 251 (464)
T KOG0284|consen 235 ------------------GL-----------------------------------------I----ASGSKDNLVKLWDP 251 (464)
T ss_pred ------------------ce-----------------------------------------e----EEccCCceeEeecC
Confidence 00 0 13456779999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcE
Q 046828 373 VSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVI 452 (627)
Q Consensus 373 ~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I 452 (627)
+++++++++..|...|..+.|+|+|.+|+|+|.|- .++||||... ..++.+ |||+. .|
T Consensus 252 rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~-~~kv~DiR~m-------------------kEl~~~-r~Hkk-dv 309 (464)
T KOG0284|consen 252 RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ-SCKVFDIRTM-------------------KELFTY-RGHKK-DV 309 (464)
T ss_pred CCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc-eEEEEehhHh-------------------HHHHHh-hcchh-hh
Confidence 99999999999999999999999999999999996 4899999511 133333 67764 59
Q ss_pred EEEEEcc-CCCEEEEEeCCCeEEEEEcC
Q 046828 453 QDICFSH-YSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 453 ~sIaFSp-Dg~~Las~S~dgTvhIw~i~ 479 (627)
.+++|+| ....|.+++.||.|..|.+.
T Consensus 310 ~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 310 TSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred eeeccccccccceeeccCCCceEEEecc
Confidence 9999999 66788899999999999987
No 40
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.71 E-value=1.8e-15 Score=169.94 Aligned_cols=224 Identities=19% Similarity=0.266 Sum_probs=168.4
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
+.++.+.+|..++|||+.++. ....+..|...|+++.+.+ .+. ++ |
T Consensus 262 ~~lvsgS~D~t~rvWd~~sg~-C~~~l~gh~stv~~~~~~~----------------~~~-~s-------g--------- 307 (537)
T KOG0274|consen 262 DKLVSGSTDKTERVWDCSTGE-CTHSLQGHTSSVRCLTIDP----------------FLL-VS-------G--------- 307 (537)
T ss_pred CEEEEEecCCcEEeEecCCCc-EEEEecCCCceEEEEEccC----------------ceE-ee-------c---------
Confidence 566667779999999988755 4566667888888887653 222 22 1
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecCcEEEEEe-CCeEEEEeCCCCceeEEEEcCC
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSPRIVAVGL-AAQIYCFDALTLESKFSVLTYP 238 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p 238 (627)
+ .|++|++|++.++..++++. +..+|++|.++..+|++|. ++.|.+||+.++++++++.+|.
T Consensus 308 ------s----------~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~ 371 (537)
T KOG0274|consen 308 ------S----------RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT 371 (537)
T ss_pred ------c----------CCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCc
Confidence 1 25899999999999999999 7779999999998777775 6689999999999999999986
Q ss_pred CCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceee
Q 046828 239 VPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLIN 318 (627)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~ 318 (627)
.. +..+.+ .... +
T Consensus 372 ~~-------------V~sl~~-------~~~~-------~---------------------------------------- 384 (537)
T KOG0274|consen 372 GR-------------VYSLIV-------DSEN-------R---------------------------------------- 384 (537)
T ss_pred ce-------------EEEEEe-------cCcc-------e----------------------------------------
Confidence 53 222322 2100 0
Q ss_pred cCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC-eEEEEeccCCCCeEEEEECCCC
Q 046828 319 LGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR-SVISQFRAHTSPISALCFDRSG 397 (627)
Q Consensus 319 lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFspdG 397 (627)
+ .+++.|+.|++||+.++ +++.++..|.+-+..+.+ .+
T Consensus 385 -----------~----------------------------~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~ 423 (537)
T KOG0274|consen 385 -----------L----------------------------LSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RD 423 (537)
T ss_pred -----------E----------------------------EeeeeccceEeecCCchhhhhhhhcCCccccccccc--cc
Confidence 0 02457899999999999 999999999998866554 68
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 398 TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 398 ~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
++|++++.||+ |++||.. .+. .+..+. +.....|..+++. ...+++++.+|++++|+
T Consensus 424 ~~Lvs~~aD~~-Ik~WD~~-------~~~------------~~~~~~-~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 424 NFLVSSSADGT-IKLWDAE-------EGE------------CLRTLE-GRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred ceeEecccccc-EEEeecc-------cCc------------eeeeec-cCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99999999998 8999986 232 444443 3122458888887 56788999999999999
Q ss_pred cCCCCCee
Q 046828 478 LTPFGGET 485 (627)
Q Consensus 478 i~~~gg~~ 485 (627)
+.......
T Consensus 481 l~~~~~~~ 488 (537)
T KOG0274|consen 481 LRSGTLIR 488 (537)
T ss_pred cccCchhh
Confidence 98754433
No 41
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.71 E-value=7.4e-16 Score=170.25 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=102.7
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
.+++|.+.+||++...+.+.+|.+|+..|.++.|+|..++|||+|.|+| |+||.|. +. .+
T Consensus 480 T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T-vKIW~is-------~f------------SC 539 (775)
T KOG0319|consen 480 TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT-VKIWSIS-------TF------------SC 539 (775)
T ss_pred ecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce-EEEEEec-------cc------------ee
Confidence 4578999999999999999999999999999999999999999999998 8999996 22 25
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccccccc
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVD 495 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~ 495 (627)
+.+| .||+.+ |....|=.+++.|++++.||-++||+++......++..|+..+-
T Consensus 540 lkT~-eGH~~a-Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvW 593 (775)
T KOG0319|consen 540 LKTF-EGHTSA-VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVW 593 (775)
T ss_pred eeee-cCccce-eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeE
Confidence 6666 799865 99999999999999999999999999999999999999987653
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.71 E-value=8.3e-16 Score=158.16 Aligned_cols=223 Identities=16% Similarity=0.252 Sum_probs=169.4
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
.-+...+-|+.++|||++++. +.-.|..|-..|+-|++.+. +|+|.-++ +
T Consensus 164 ~wf~tgs~DrtikIwDlatg~-LkltltGhi~~vr~vavS~r-------------HpYlFs~g-e--------------- 213 (460)
T KOG0285|consen 164 EWFATGSADRTIKIWDLATGQ-LKLTLTGHIETVRGVAVSKR-------------HPYLFSAG-E--------------- 213 (460)
T ss_pred eeEEecCCCceeEEEEcccCe-EEEeecchhheeeeeeeccc-------------CceEEEec-C---------------
Confidence 334445568889999999855 34445556666677776654 48875432 1
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEc
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~ 236 (627)
++.|+-|||+..+.|+.+.. =+.||++++.| ++|+++. +..|+|||++|...++++.+
T Consensus 214 ------------------dk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 214 ------------------DKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred ------------------CCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC
Confidence 26699999999999998874 47999999987 7788775 45799999999999999999
Q ss_pred CCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcce
Q 046828 237 YPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGL 316 (627)
Q Consensus 237 ~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl 316 (627)
|.++ +..+.+ -+.++ . +
T Consensus 276 H~~~-------------V~~V~~------~~~dp-q---------------------------------------v---- 292 (460)
T KOG0285|consen 276 HTNP-------------VASVMC------QPTDP-Q---------------------------------------V---- 292 (460)
T ss_pred CCCc-------------ceeEEe------ecCCC-c---------------------------------------e----
Confidence 9776 111111 11110 0 0
Q ss_pred eecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCC
Q 046828 317 INLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRS 396 (627)
Q Consensus 317 ~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspd 396 (627)
.+++.|++|++||+..++.+.++..|...|.+++.+|.
T Consensus 293 ------------------------------------------it~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~ 330 (460)
T KOG0285|consen 293 ------------------------------------------ITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPK 330 (460)
T ss_pred ------------------------------------------EEecCCceEEEeeeccCceeEeeecccceeeEEecCCc
Confidence 03467999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEE
Q 046828 397 GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIF 476 (627)
Q Consensus 397 G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw 476 (627)
-.++|+||.| +|+-|++ |. |. .+..+ .|++ +.|.+++-..|+ ++++|+++|++..|
T Consensus 331 e~~fASas~d--nik~w~~-p~------g~------------f~~nl-sgh~-~iintl~~nsD~-v~~~G~dng~~~fw 386 (460)
T KOG0285|consen 331 ENLFASASPD--NIKQWKL-PE------GE------------FLQNL-SGHN-AIINTLSVNSDG-VLVSGGDNGSIMFW 386 (460)
T ss_pred hhhhhccCCc--cceeccC-Cc------cc------------hhhcc-cccc-ceeeeeeeccCc-eEEEcCCceEEEEE
Confidence 9999999998 4899998 54 32 34443 5664 679999999997 67799999999999
Q ss_pred EcCC
Q 046828 477 VLTP 480 (627)
Q Consensus 477 ~i~~ 480 (627)
+-..
T Consensus 387 dwks 390 (460)
T KOG0285|consen 387 DWKS 390 (460)
T ss_pred ecCc
Confidence 9864
No 43
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=9.3e-16 Score=150.61 Aligned_cols=217 Identities=15% Similarity=0.173 Sum_probs=152.6
Q ss_pred CcEEEEEECCCCceEEEEecCC-eEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
+++||+|+...|.+++++..+. +|.+++.+. ..++++. +..|++||+.|++.++.+.+|... +
T Consensus 38 drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aq-------------V 104 (307)
T KOG0316|consen 38 DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQ-------------V 104 (307)
T ss_pred CceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccce-------------e
Confidence 4899999999999999999665 999999875 4566654 557999999999999999998643 5
Q ss_pred ceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 255 GPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 255 ~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
+.+.+.. .-++.++-+..++.|...+ .+..|- . .++.++ .++..+ .+++
T Consensus 105 NtV~fNeesSVv~SgsfD~s~r~wDCRS-~s~ePi------------Q----ildea~---D~V~Si------~v~~--- 155 (307)
T KOG0316|consen 105 NTVRFNEESSVVASGSFDSSVRLWDCRS-RSFEPI------------Q----ILDEAK---DGVSSI------DVAE--- 155 (307)
T ss_pred eEEEecCcceEEEeccccceeEEEEccc-CCCCcc------------c----hhhhhc---CceeEE------Eecc---
Confidence 5666643 5677777776666654321 111110 0 000000 000000 0000
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEE
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINI 412 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~V 412 (627)
.....++.||+++.||+..++.....-+ .||++++|++||..+..++-+++ +|+
T Consensus 156 -----------------------heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~st-lrL 209 (307)
T KOG0316|consen 156 -----------------------HEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDST-LRL 209 (307)
T ss_pred -----------------------cEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccce-eee
Confidence 0012467899999999999987666655 48999999999999999999998 799
Q ss_pred EeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCc-EEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 413 FRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAV-IQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 413 wdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~-I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
-|-. +| ++.+-..||.+.. =.+.+|+.....++++|.||.|.+|++.....
T Consensus 210 lDk~-------tG-------------klL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 210 LDKE-------TG-------------KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred cccc-------hh-------------HHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecccee
Confidence 8854 45 3333446776543 45778999899999999999999999976443
No 44
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=3.8e-15 Score=158.57 Aligned_cols=234 Identities=19% Similarity=0.246 Sum_probs=165.2
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCc-EEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNG-FQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G-~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.-++.|.-+.|-+. .++|+.|.+.| +||||..+ ..+...+-.|+.||.++++-|.- .+
T Consensus 66 rFk~~v~s~~fR~D-------G~LlaaGD~sG~V~vfD~k~-r~iLR~~~ah~apv~~~~f~~~d-------------~t 124 (487)
T KOG0310|consen 66 RFKDVVYSVDFRSD-------GRLLAAGDESGHVKVFDMKS-RVILRQLYAHQAPVHVTKFSPQD-------------NT 124 (487)
T ss_pred hhccceeEEEeecC-------CeEEEccCCcCcEEEecccc-HHHHHHHhhccCceeEEEecccC-------------Ce
Confidence 34778888888642 46777776665 99999443 55667778899999999987642 33
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC---cEEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP---RIVAV 214 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~---~~LaV 214 (627)
+++ .++ .+.++++||+.+...+.+|. +...|++.+|++ .++++
T Consensus 125 ~l~-s~s--------------------------------Dd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvt 171 (487)
T KOG0310|consen 125 MLV-SGS--------------------------------DDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVT 171 (487)
T ss_pred EEE-ecC--------------------------------CCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEe
Confidence 443 321 13789999999998765776 445999999987 47777
Q ss_pred Ee-CCeEEEEeCCCC-ceeEEEEcCCCCCCCCCCCcCcccccceeeEcC-ceEEEcCCCCCcCCCCccCCCCCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTL-ESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP-RWLAYASNNPLLPNTGRLSPQSLTPPSVSP 291 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~-e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~-r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~ 291 (627)
|. |++|++||+++. +.+.++ .|..|. -..+++.+ ..+|.+
T Consensus 172 GsYDg~vrl~DtR~~~~~v~el-nhg~pV------------e~vl~lpsgs~iasA------------------------ 214 (487)
T KOG0310|consen 172 GSYDGKVRLWDTRSLTSRVVEL-NHGCPV------------ESVLALPSGSLIASA------------------------ 214 (487)
T ss_pred cCCCceEEEEEeccCCceeEEe-cCCCce------------eeEEEcCCCCEEEEc------------------------
Confidence 74 779999999987 444444 333331 11223321 222221
Q ss_pred CCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEE
Q 046828 292 STSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKD 371 (627)
Q Consensus 292 ~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD 371 (627)
....|+|||
T Consensus 215 -----------------------------------------------------------------------gGn~vkVWD 223 (487)
T KOG0310|consen 215 -----------------------------------------------------------------------GGNSVKVWD 223 (487)
T ss_pred -----------------------------------------------------------------------CCCeEEEEE
Confidence 124699999
Q ss_pred CCCCeE-EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC
Q 046828 372 IVSRSV-ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA 450 (627)
Q Consensus 372 ~~s~~~-l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a 450 (627)
+.++.+ +..+..|...|+||+|..+++.|.+|+-||+ ++|||+. .. .-++.+ + -++
T Consensus 224 l~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t-~~------------------Kvv~s~--~-~~~ 280 (487)
T KOG0310|consen 224 LTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTT-NY------------------KVVHSW--K-YPG 280 (487)
T ss_pred ecCCceehhhhhcccceEEEEEeecCCceEeecccccc-eEEEEcc-ce------------------EEEEee--e-ccc
Confidence 996654 5555569999999999999999999999999 7999974 11 122222 1 135
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 451 VIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 451 ~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
.|.+|+.|||++.+++|-.+|.+-+-+.
T Consensus 281 pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 281 PVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred ceeeEEecCCCceEEEecccceeeeehh
Confidence 6999999999999999999999877643
No 45
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.1e-15 Score=170.99 Aligned_cols=262 Identities=13% Similarity=0.132 Sum_probs=178.3
Q ss_pred CeEEEEeccC-cEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 81 KHVLLLGYSN-GFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 81 ~~vl~~Gy~~-G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
+-.++.+.-+ .+|+||-.-.. ..+-+-.||||||-+.|-|.- ||. |. +|
T Consensus 21 rPwILtslHsG~IQlWDYRM~t-li~rFdeHdGpVRgv~FH~~q-------------plF--VS------GG-------- 70 (1202)
T KOG0292|consen 21 RPWILTSLHSGVIQLWDYRMGT-LIDRFDEHDGPVRGVDFHPTQ-------------PLF--VS------GG-------- 70 (1202)
T ss_pred CCEEEEeecCceeeeehhhhhh-HHhhhhccCCccceeeecCCC-------------CeE--Ee------cC--------
Confidence 4455566655 59999988644 456667899999999987653 774 43 22
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEE
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVL 235 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~ 235 (627)
.+-+|++|+.++.+++.+|..+ .-|+.+.|.+ -.|+++.++ +|+||+..+.+++-+++
T Consensus 71 ------------------DDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt 132 (1202)
T KOG0292|consen 71 ------------------DDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT 132 (1202)
T ss_pred ------------------CccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe
Confidence 1368999999999999999855 5999999987 567777766 69999999999999999
Q ss_pred cCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhh
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLA 313 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~ 313 (627)
+|..- +-+-.+.| ..++.++-+.+++.|....+.--+
T Consensus 133 GHnHY-------------VMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~---------------------------- 171 (1202)
T KOG0292|consen 133 GHNHY-------------VMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN---------------------------- 171 (1202)
T ss_pred cCceE-------------EEeeccCCccceEEEecccceEEEEeecchhccC----------------------------
Confidence 98531 11112333 577777766666655432100000
Q ss_pred cceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEE
Q 046828 314 AGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCF 393 (627)
Q Consensus 314 ~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laF 393 (627)
.++| +....-+.... ..+.-+..|-. .-..+.+|...|+..+|
T Consensus 172 ---------------------~~pg-----~~e~~~~~~~~-~~dLfg~~DaV----------VK~VLEGHDRGVNwaAf 214 (1202)
T KOG0292|consen 172 ---------------------KAPG-----SLEDQMRGQQG-NSDLFGQTDAV----------VKHVLEGHDRGVNWAAF 214 (1202)
T ss_pred ---------------------CCCC-----Cchhhhhcccc-chhhcCCcCee----------eeeeecccccccceEEe
Confidence 0000 00000000000 00000111222 23467899999999999
Q ss_pred CCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeE
Q 046828 394 DRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTC 473 (627)
Q Consensus 394 spdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTv 473 (627)
.|.--+|++|++|.. |++|+.. .. ..|.+-.+ |||.+ .|.++-|.|.-..|.+.|.|++|
T Consensus 215 hpTlpliVSG~DDRq-VKlWrmn-et----------------KaWEvDtc-rgH~n-nVssvlfhp~q~lIlSnsEDksi 274 (1202)
T KOG0292|consen 215 HPTLPLIVSGADDRQ-VKLWRMN-ET----------------KAWEVDTC-RGHYN-NVSSVLFHPHQDLILSNSEDKSI 274 (1202)
T ss_pred cCCcceEEecCCcce-eeEEEec-cc----------------cceeehhh-hcccC-CcceEEecCccceeEecCCCccE
Confidence 999999999999976 8999974 21 11344333 89876 59999999999999999999999
Q ss_pred EEEEcCCCCCeeecc
Q 046828 474 HIFVLTPFGGETVLQ 488 (627)
Q Consensus 474 hIw~i~~~gg~~~~~ 488 (627)
+|||++...+..+++
T Consensus 275 rVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 275 RVWDMTKRTSVQTFR 289 (1202)
T ss_pred EEEecccccceeeee
Confidence 999999988877664
No 46
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.69 E-value=5.2e-16 Score=162.16 Aligned_cols=224 Identities=16% Similarity=0.238 Sum_probs=167.4
Q ss_pred CCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
.+.++..++++..++|+++... +++.|+.|.+-|..+.+.-.. ..||.
T Consensus 231 ~~~~iAas~d~~~r~Wnvd~~r-~~~TLsGHtdkVt~ak~~~~~---------------~~vVs---------------- 278 (459)
T KOG0288|consen 231 NKHVIAASNDKNLRLWNVDSLR-LRHTLSGHTDKVTAAKFKLSH---------------SRVVS---------------- 278 (459)
T ss_pred CceEEeecCCCceeeeeccchh-hhhhhcccccceeeehhhccc---------------cceee----------------
Confidence 4789999999999999999865 567788899999888875322 12343
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecCcEEEEE-eCCeEEEEeCCCCceeEEEEcCC
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVG-LAAQIYCFDALTLESKFSVLTYP 238 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p 238 (627)
|. .+.+|++||+....+.+++-+.+.+.+|.++...++++ .+++|+.||+++..+.+++..+.
T Consensus 279 ------gs----------~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg 342 (459)
T KOG0288|consen 279 ------GS----------ADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG 342 (459)
T ss_pred ------cc----------ccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCc
Confidence 11 35889999999999999999999999999998777777 57789999999988877764332
Q ss_pred CCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceee
Q 046828 239 VPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLIN 318 (627)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~ 318 (627)
. +..+.++. + +
T Consensus 343 ~--------------vtSl~ls~-------~--------g---------------------------------------- 353 (459)
T KOG0288|consen 343 R--------------VTSLDLSM-------D--------G---------------------------------------- 353 (459)
T ss_pred c--------------eeeEeecc-------C--------C----------------------------------------
Confidence 1 11222211 0 0
Q ss_pred cCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccC----CCCeEEEEEC
Q 046828 319 LGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAH----TSPISALCFD 394 (627)
Q Consensus 319 lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH----~~~Is~laFs 394 (627)
.+-+ +...|.++.+.|+.+.+....|.|. .+..+.+.||
T Consensus 354 -----~~lL--------------------------------sssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 354 -----LELL--------------------------------SSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred -----eEEe--------------------------------eecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 0000 1235677888898888877777764 2458999999
Q ss_pred CCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEE
Q 046828 395 RSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCH 474 (627)
Q Consensus 395 pdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvh 474 (627)
|+|.++|+||.||. |+||++. +|. ....+..-..++.|.+++|+|-|+.|++++.++.+.
T Consensus 397 pd~~YvaAGS~dgs-v~iW~v~-------tgK------------lE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~ 456 (459)
T KOG0288|consen 397 PDGSYVAAGSADGS-VYIWSVF-------TGK------------LEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVT 456 (459)
T ss_pred CCCceeeeccCCCc-EEEEEcc-------Cce------------EEEEeccCCCCcceEEEEEcCCCchhhcccCCcceE
Confidence 99999999999998 7999986 331 333333223334599999999999999999999999
Q ss_pred EEE
Q 046828 475 IFV 477 (627)
Q Consensus 475 Iw~ 477 (627)
+|.
T Consensus 457 lW~ 459 (459)
T KOG0288|consen 457 LWT 459 (459)
T ss_pred ecC
Confidence 993
No 47
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.2e-15 Score=161.30 Aligned_cols=255 Identities=15% Similarity=0.255 Sum_probs=175.1
Q ss_pred CCCCCCcEEEEEeeccCCC-----CCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCce-EEEE-EeeCCCCCCCCC
Q 046828 58 SHELKDQVLWSSFDKLELS-----PSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPV-TFLQ-MQPLPAKSDGQE 130 (627)
Q Consensus 58 ~~~~~d~V~wa~Fd~l~~~-----~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V-~~v~-~lp~p~~~~~~D 130 (627)
+.+.+..|+-..|.++++. +.....++..|...-+.+||++.++ .+-++...|.- +.++ |...
T Consensus 243 DGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak--~~k~~~~~g~e~~~~e~FeVS-------- 312 (514)
T KOG2055|consen 243 DGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK--VTKLKPPYGVEEKSMERFEVS-------- 312 (514)
T ss_pred cCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc--cccccCCCCcccchhheeEec--------
Confidence 4445556777777665554 2222478888889999999999876 44555444432 2222 1111
Q ss_pred CcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC-
Q 046828 131 GFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP- 209 (627)
Q Consensus 131 ~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~- 209 (627)
+..+.||+.+ . .+-|.|-..+|++.+++++....|.++.|+.
T Consensus 313 ---hd~~fia~~G--------------------~--------------~G~I~lLhakT~eli~s~KieG~v~~~~fsSd 355 (514)
T KOG2055|consen 313 ---HDSNFIAIAG--------------------N--------------NGHIHLLHAKTKELITSFKIEGVVSDFTFSSD 355 (514)
T ss_pred ---CCCCeEEEcc--------------------c--------------CceEEeehhhhhhhhheeeeccEEeeEEEecC
Confidence 2236777643 0 1458999999999999999999999999975
Q ss_pred --cEEEEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCC
Q 046828 210 --RIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPP 287 (627)
Q Consensus 210 --~~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~ 287 (627)
++++++..++|++||+++..+++++..-.. .+|.. -++++.++|||.+++
T Consensus 356 sk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~-------v~gts---~~~S~ng~ylA~GS~------------------ 407 (514)
T KOG2055|consen 356 SKELLASGGTGEVYVWNLRQNSCLHRFVDDGS-------VHGTS---LCISLNGSYLATGSD------------------ 407 (514)
T ss_pred CcEEEEEcCCceEEEEecCCcceEEEEeecCc-------cceee---eeecCCCceEEeccC------------------
Confidence 677888889999999999988888764221 12211 123455677777653
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeE
Q 046828 288 SVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMV 367 (627)
Q Consensus 288 ~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V 367 (627)
.|.|
T Consensus 408 ----------------------------------------------------------------------------~GiV 411 (514)
T KOG2055|consen 408 ----------------------------------------------------------------------------SGIV 411 (514)
T ss_pred ----------------------------------------------------------------------------cceE
Confidence 3455
Q ss_pred EEEECC------CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCC-EEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 368 VVKDIV------SRSVISQFRAHTSPISALCFDRSGTLLVTASIHGN-NINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 368 ~IwD~~------s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt-~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
.|||.. +.+++..+..-+..|+.|+|+||+++||.||..-. .+|+-.+ |++.. .+ +|+..
T Consensus 412 NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv-PS~TV------Fs--NfP~~---- 478 (514)
T KOG2055|consen 412 NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV-PSCTV------FS--NFPTS---- 478 (514)
T ss_pred EEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec-cceee------ec--cCCCC----
Confidence 555543 24677788888889999999999999999997432 2566655 44311 00 12211
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
+.+-..|.|++|||.|-+||+|..+|.+|||.|..|
T Consensus 479 -----n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~hy 514 (514)
T KOG2055|consen 479 -----NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLHHY 514 (514)
T ss_pred -----CCcccceEEEEecCCCceEEeecCCCceeeEeeccC
Confidence 222235999999999999999999999999999764
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=7.8e-16 Score=167.23 Aligned_cols=224 Identities=16% Similarity=0.166 Sum_probs=163.6
Q ss_pred cEEEEEECCCCceEEEEecCC-eEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYG 255 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~ 255 (627)
+.|.||+-.|+.+|++++-.. ||++.+|=. +.|++|.++ +|+||+..|++++++++.|+.- ..
T Consensus 35 G~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~Dy-------------IR 101 (794)
T KOG0276|consen 35 GDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDY-------------IR 101 (794)
T ss_pred CeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccc-------------ee
Confidence 679999999999999999654 999888753 788888776 7999999999999999998753 44
Q ss_pred eeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecc
Q 046828 256 PMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQD 333 (627)
Q Consensus 256 ~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~ 333 (627)
.+++.| -++-.++++.++..|.- +......+ ..-||..|. +.=-|+
T Consensus 102 ~iavHPt~P~vLtsSDDm~iKlW~w----------------------------e~~wa~~q--tfeGH~HyV-Mqv~fn- 149 (794)
T KOG0276|consen 102 SIAVHPTLPYVLTSSDDMTIKLWDW----------------------------ENEWACEQ--TFEGHEHYV-MQVAFN- 149 (794)
T ss_pred eeeecCCCCeEEecCCccEEEEeec----------------------------cCceeeee--EEcCcceEE-EEEEec-
Confidence 566666 25555666666554321 10000000 112443331 000111
Q ss_pred ccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCC--CEEEEEeCCCCEEE
Q 046828 334 FIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSG--TLLVTASIHGNNIN 411 (627)
Q Consensus 334 ~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG--~lLaTaS~dGt~I~ 411 (627)
|.. +.+| ++++-|++|+||.+.+..+..+|++|...|+|+.|=+-| -+|+||++|-+ |+
T Consensus 150 --PkD------------~ntF----aS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iK 210 (794)
T KOG0276|consen 150 --PKD------------PNTF----ASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IK 210 (794)
T ss_pred --CCC------------ccce----eeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EE
Confidence 111 1223 367889999999999999999999999999999999877 48999999976 89
Q ss_pred EEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecc
Q 046828 412 IFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQ 488 (627)
Q Consensus 412 Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~ 488 (627)
|||.. + . .++..| .||++ .|..+.|.|.=-++++||.|||++||.-.+|....++.
T Consensus 211 vWDyQ-t------k------------~CV~TL-eGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn 266 (794)
T KOG0276|consen 211 VWDYQ-T------K------------SCVQTL-EGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN 266 (794)
T ss_pred Eeecc-h------H------------HHHHHh-hcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh
Confidence 99986 2 1 145555 78876 59999999999999999999999999999886655443
No 49
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.68 E-value=9.7e-16 Score=157.69 Aligned_cols=186 Identities=15% Similarity=0.168 Sum_probs=141.5
Q ss_pred CCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccc
Q 046828 178 SPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 178 ~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~ 253 (627)
.+++++|||+.||+...+|. +.+.|..|++|+ -+|.++ .+.+|+|||+...+.++..-+|-..
T Consensus 171 ~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~------------- 237 (460)
T KOG0285|consen 171 ADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSG------------- 237 (460)
T ss_pred CCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccce-------------
Confidence 46999999999999999998 667999999997 355555 5668999999998877666555221
Q ss_pred cceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeee
Q 046828 254 YGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYY 331 (627)
Q Consensus 254 ~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~ 331 (627)
+..+++.| +.|+
T Consensus 238 V~~L~lhPTldvl~------------------------------------------------------------------ 251 (460)
T KOG0285|consen 238 VYCLDLHPTLDVLV------------------------------------------------------------------ 251 (460)
T ss_pred eEEEeccccceeEE------------------------------------------------------------------
Confidence 22233322 1111
Q ss_pred ccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEE
Q 046828 332 QDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNIN 411 (627)
Q Consensus 332 ~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~ 411 (627)
.++.|.+++|||+.+...+..+.+|..+|..+.|.|-.-.++|+|.|++ |+
T Consensus 252 ----------------------------t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t-vr 302 (460)
T KOG0285|consen 252 ----------------------------TGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST-VR 302 (460)
T ss_pred ----------------------------ecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce-EE
Confidence 2457889999999999999999999999999999998888999999998 89
Q ss_pred EEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccc
Q 046828 412 IFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQN 491 (627)
Q Consensus 412 Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~ 491 (627)
+||+. .|. -...+ ..| .-.|.+++..|+...+|++|.| .|+-|++....-..++..|+
T Consensus 303 lWDl~-------agk------------t~~tl-t~h-kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~ 360 (460)
T KOG0285|consen 303 LWDLR-------AGK------------TMITL-THH-KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHN 360 (460)
T ss_pred Eeeec-------cCc------------eeEee-ecc-cceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccc
Confidence 99996 332 23333 222 2349999999999999888777 56889997765556677776
Q ss_pred cc
Q 046828 492 SH 493 (627)
Q Consensus 492 s~ 493 (627)
..
T Consensus 361 ~i 362 (460)
T KOG0285|consen 361 AI 362 (460)
T ss_pred ce
Confidence 54
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.68 E-value=9.1e-15 Score=147.93 Aligned_cols=226 Identities=16% Similarity=0.250 Sum_probs=170.5
Q ss_pred CCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeecc
Q 046828 79 SFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVG 158 (627)
Q Consensus 79 ~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~ 158 (627)
+...+|..|.|+.|++||++.+. ..-+|.+.-+|+..++ |.. |.+.+|++ |
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~----~~rk~k~h~~~vNs~~-p~r----------rg~~lv~S-------g------- 151 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGK----RIRKHKGHTSFVNSLD-PSR----------RGPQLVCS-------G------- 151 (338)
T ss_pred CCCEEEEecCCceEEEEecccce----eeehhccccceeeecC-ccc----------cCCeEEEe-------c-------
Confidence 45889999999999999999855 4456777778888776 421 12223333 1
Q ss_pred CcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC---cEEEEEeCCeEEEEeCCCCceeEEEE
Q 046828 159 RDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP---RIVAVGLAAQIYCFDALTLESKFSVL 235 (627)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~---~~LaV~~~~~I~i~D~~t~e~~~tl~ 235 (627)
..+++++|||+|+.+.+++++-+..+.+|.|+. +++..+.++.|++||++..+.++++.
T Consensus 152 ------------------sdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls 213 (338)
T KOG0265|consen 152 ------------------SDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS 213 (338)
T ss_pred ------------------CCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEee
Confidence 135899999999999999998888999999986 66666678899999999999999999
Q ss_pred cCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcc
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAG 315 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~g 315 (627)
+|..+ +.-+++++ |+..
T Consensus 214 Gh~Dt-------------It~lsls~----~gs~---------------------------------------------- 230 (338)
T KOG0265|consen 214 GHADT-------------ITGLSLSR----YGSF---------------------------------------------- 230 (338)
T ss_pred cccCc-------------eeeEEecc----CCCc----------------------------------------------
Confidence 98765 11233311 0000
Q ss_pred eeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC----CeEEEEeccCCC----C
Q 046828 316 LINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS----RSVISQFRAHTS----P 387 (627)
Q Consensus 316 l~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s----~~~l~~~~aH~~----~ 387 (627)
+. +-..|.+|++||++- .+++..|.+|.. .
T Consensus 231 --------------------------------------ll----snsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn 268 (338)
T KOG0265|consen 231 --------------------------------------LL----SNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN 268 (338)
T ss_pred --------------------------------------cc----cccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence 00 113578999999874 366889998754 3
Q ss_pred eEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEE
Q 046828 388 ISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIV 467 (627)
Q Consensus 388 Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~ 467 (627)
....+|+|+++.+..+|.|.. +.|||.. . . ..+|+| .||.. .|..++|.|...+|.++
T Consensus 269 lL~cswsp~~~~i~ags~dr~-vyvwd~~-~-------r-----------~~lykl-pGh~g-svn~~~Fhp~e~iils~ 326 (338)
T KOG0265|consen 269 LLKCSWSPNGTKITAGSADRF-VYVWDTT-S-------R-----------RILYKL-PGHYG-SVNEVDFHPTEPIILSC 326 (338)
T ss_pred cceeeccCCCCccccccccce-EEEeecc-c-------c-----------cEEEEc-CCcce-eEEEeeecCCCcEEEEe
Confidence 456789999999999999976 7999974 1 1 267877 78864 59999999999999999
Q ss_pred eCCCeEEEEEc
Q 046828 468 SSRGTCHIFVL 478 (627)
Q Consensus 468 S~dgTvhIw~i 478 (627)
++|.||.+=.|
T Consensus 327 ~sdk~i~lgei 337 (338)
T KOG0265|consen 327 SSDKTIYLGEI 337 (338)
T ss_pred ccCceeEeecc
Confidence 99999987443
No 51
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=8e-15 Score=160.50 Aligned_cols=240 Identities=19% Similarity=0.200 Sum_probs=177.2
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCc-EEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNG-FQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G-~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
.+.|.-+.|... ...|++|+.+| ++|||++....++++...|.+.|.++++.. .++
T Consensus 217 ~~~vtSv~ws~~-------G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~----------------~~l 273 (484)
T KOG0305|consen 217 EELVTSVKWSPD-------GSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS----------------SVL 273 (484)
T ss_pred CCceEEEEECCC-------CCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC----------------ceE
Confidence 677777777632 56788888776 999999998887777777888888888762 122
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEE-Ee-cCCeEEEEEecC--cEEEEEe
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHV-LR-FRSTVYMVRCSP--RIVAVGL 216 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~t-L~-f~s~V~sV~~s~--~~LaV~~ 216 (627)
.++ . -++.|.++|++..+.+.. +. +...|+.+++++ +.+|+|.
T Consensus 274 ssG------s---------------------------r~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGg 320 (484)
T KOG0305|consen 274 SSG------S---------------------------RDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGG 320 (484)
T ss_pred EEe------c---------------------------CCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCC
Confidence 221 1 126699999999887665 66 556999999997 7899985
Q ss_pred -CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCC
Q 046828 217 -AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSP 295 (627)
Q Consensus 217 -~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~ 295 (627)
|..++|||..+.+.++++.+|... + +-+|+++-..-
T Consensus 321 nDN~~~Iwd~~~~~p~~~~~~H~aA-------------V-------KA~awcP~q~~----------------------- 357 (484)
T KOG0305|consen 321 NDNVVFIWDGLSPEPKFTFTEHTAA-------------V-------KALAWCPWQSG----------------------- 357 (484)
T ss_pred CccceEeccCCCccccEEEecccee-------------e-------eEeeeCCCccC-----------------------
Confidence 668999999998999999888653 3 33455542110
Q ss_pred CCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC
Q 046828 296 SNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR 375 (627)
Q Consensus 296 s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~ 375 (627)
| +++. .+..|+.|++||..++
T Consensus 358 --------------------l-------------------------------------LAsG--GGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 358 --------------------L-------------------------------------LATG--GGSADRCIKFWNTNTG 378 (484)
T ss_pred --------------------c-------------------------------------eEEc--CCCcccEEEEEEcCCC
Confidence 0 0000 2457899999999999
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCC-CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEE
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHG-NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQD 454 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG-t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~s 454 (627)
+.+..+.. .+-|..|.|++..+-|+++-... ..|.||+. |.. .++.. +.||+. +|..
T Consensus 379 ~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~-ps~------------------~~~~~-l~gH~~-RVl~ 436 (484)
T KOG0305|consen 379 ARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKY-PSM------------------KLVAE-LLGHTS-RVLY 436 (484)
T ss_pred cEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEec-ccc------------------ceeee-ecCCcc-eeEE
Confidence 88877764 46799999999998777764432 23899997 331 13333 368764 7999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 455 ICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 455 IaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
+++||||+.|++++.|.|+++|++-+.
T Consensus 437 la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 437 LALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEECCCCCEEEEecccCcEEeccccCC
Confidence 999999999999999999999999765
No 52
>PF12490 BCAS3: Breast carcinoma amplified sequence 3 ; InterPro: IPR022175 This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length. The proteins in this family have been shown to be proto-oncogenes implicated in the development of breast cancer.
Probab=99.67 E-value=5.9e-17 Score=165.72 Aligned_cols=89 Identities=54% Similarity=0.814 Sum_probs=81.2
Q ss_pred CCCeeeeeeeeeecCC-CCccccccccccccCC-ccCCCccceeeecccccccCCCccccc-ccCcceEEEEcCCCcEEE
Q 046828 525 PLPVTLSVVSRIKNNN-SGWLNTVSSTASSTAG-KTSIPSGALAAVFHSSLHQDLQPLDSK-VNDLEHVLVYTPSGHVVQ 601 (627)
Q Consensus 525 p~~~~l~~~~~i~~~~-~~w~~~~~~~~~~~~~-~~~~~~~~v~~~f~~~~~~~~~~~~~~-~~~~~~l~v~~~~G~l~~ 601 (627)
|+|++|++|+||||++ +||+|++++++++++| +.+.++|++|+.||++......+.... .+.+++||||+|+|+|+|
T Consensus 1 P~Pv~l~~vsrIK~~~~~g~~~tv~~aassa~g~~~~~~sga~a~~f~~~~~~~~~~~~~~~~~~~~~LlV~spsG~Liq 80 (251)
T PF12490_consen 1 PPPVTLSVVSRIKQGNTLGWLNTVSNAASSATGGKPSSVSGAFASSFHNSKGSSSEPSDSSSSKAVESLLVFSPSGHLIQ 80 (251)
T ss_pred CCCEEechHHhhcCCccccccccccccccchhcCCcccceeEEccccccCCCCcccccccccccccceEEEECCCCcEEE
Confidence 6889999999999999 8999999999999998 889999999999999977766666654 799999999999999999
Q ss_pred EEeeccCCCCcc
Q 046828 602 YKLLSSIGGESS 613 (627)
Q Consensus 602 y~l~p~~~~~~~ 613 (627)
|.|+|+.++|..
T Consensus 81 y~L~p~~~~~~~ 92 (251)
T PF12490_consen 81 YELRPSPGSDPT 92 (251)
T ss_pred EEEeeccccCcc
Confidence 999999998655
No 53
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.66 E-value=5e-16 Score=164.94 Aligned_cols=260 Identities=13% Similarity=0.102 Sum_probs=185.2
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
+|.+.|..+.|= +.....+|..|.|+.++||++-+.+.+.+.+..|..+|+-+.+..... .+|
T Consensus 212 gH~kgvsai~~f-----p~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~------------~fL 274 (503)
T KOG0282|consen 212 GHTKGVSAIQWF-----PKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT------------SFL 274 (503)
T ss_pred CCccccchhhhc-----cceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC------------eee
Confidence 344445544442 223477888999999999999997778888888999998888765432 222
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC---cEEEEE-
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP---RIVAVG- 215 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~---~~LaV~- 215 (627)
.+ ..++.|++||++||+++..+.....+++|.+.+ +++++|
T Consensus 275 -S~----------------------------------sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~ 319 (503)
T KOG0282|consen 275 -SA----------------------------------SFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGG 319 (503)
T ss_pred -ee----------------------------------ecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEec
Confidence 11 135889999999999999999999999999987 455555
Q ss_pred eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCC
Q 046828 216 LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSP 295 (627)
Q Consensus 216 ~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~ 295 (627)
++++|..||+++++.++.+..|-.+ +..+.+ -+..
T Consensus 320 sd~ki~~wDiRs~kvvqeYd~hLg~-------------i~~i~F-------~~~g------------------------- 354 (503)
T KOG0282|consen 320 SDKKIRQWDIRSGKVVQEYDRHLGA-------------ILDITF-------VDEG------------------------- 354 (503)
T ss_pred CCCcEEEEeccchHHHHHHHhhhhh-------------eeeeEE-------ccCC-------------------------
Confidence 5678999999999976655433111 111111 1100
Q ss_pred CCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC
Q 046828 296 SNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR 375 (627)
Q Consensus 296 s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~ 375 (627)
+ +| .++..|+.|+||+....
T Consensus 355 ---------------------------------~-----------------------rF----issSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 355 ---------------------------------R-----------------------RF----ISSSDDKSVRIWENRIP 374 (503)
T ss_pred ---------------------------------c-----------------------eE----eeeccCccEEEEEcCCC
Confidence 0 01 13457889999999887
Q ss_pred eEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCc-EE
Q 046828 376 SVISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAV-IQ 453 (627)
Q Consensus 376 ~~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~-I~ 453 (627)
-.+..+. .+.....+|+..|+|..++.=|.+.. |-||.+.+-.. ....+.++||..+. =.
T Consensus 375 v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~-i~ifs~~~~~r-----------------~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 375 VPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY-IAIFSTVPPFR-----------------LNKKKRFEGHSVAGYSC 436 (503)
T ss_pred ccchhhcchhhccCcceecCCCCCeehhhccCce-EEEEecccccc-----------------cCHhhhhcceeccCcee
Confidence 6555443 33456778999999999999999876 79998763221 13344456776544 56
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccc
Q 046828 454 DICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHV 494 (627)
Q Consensus 454 sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v 494 (627)
.+.|||||++|++|+.||.+.+|+-++......+.+|+.-.
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~c 477 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPC 477 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcce
Confidence 78999999999999999999999999877766777775433
No 54
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.66 E-value=8.4e-15 Score=162.05 Aligned_cols=223 Identities=19% Similarity=0.272 Sum_probs=174.1
Q ss_pred CeEEEEeccCc-EEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 81 KHVLLLGYSNG-FQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 81 ~~vl~~Gy~~G-~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
.+.+++|+++| +||||+..... .|....|+|.+-.++..|.-. - .++ +
T Consensus 424 d~~Iv~G~k~Gel~vfdlaS~~l-~Eti~AHdgaIWsi~~~pD~~------------g---~vT------~--------- 472 (888)
T KOG0306|consen 424 DRYIVLGTKNGELQVFDLASASL-VETIRAHDGAIWSISLSPDNK------------G---FVT------G--------- 472 (888)
T ss_pred CceEEEeccCCceEEEEeehhhh-hhhhhccccceeeeeecCCCC------------c---eEE------e---------
Confidence 56778888887 99999998664 566668999988888776531 1 122 1
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCC-----Cc--------eEEEEecCCeEEEEEecC--cEEEEEe-CCeEEEE
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRS-----HN--------YVHVLRFRSTVYMVRCSP--RIVAVGL-AAQIYCF 223 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t-----~~--------~V~tL~f~s~V~sV~~s~--~~LaV~~-~~~I~i~ 223 (627)
..+++|+|||.+- |. .-.+|++...|.+|++|| ++|||++ +.+|+||
T Consensus 473 -----------------saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVy 535 (888)
T KOG0306|consen 473 -----------------SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVY 535 (888)
T ss_pred -----------------cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence 1358999999752 11 125788899999999997 8999995 6799999
Q ss_pred eCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCccc
Q 046828 224 DALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLM 301 (627)
Q Consensus 224 D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v 301 (627)
-+.|++...++-+|..| +..+.++| ..|+
T Consensus 536 flDtlKFflsLYGHkLP-------------V~smDIS~DSkliv------------------------------------ 566 (888)
T KOG0306|consen 536 FLDTLKFFLSLYGHKLP-------------VLSMDISPDSKLIV------------------------------------ 566 (888)
T ss_pred Eecceeeeeeecccccc-------------eeEEeccCCcCeEE------------------------------------
Confidence 99999988888888776 33333322 1111
Q ss_pred chhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEe
Q 046828 302 ARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQF 381 (627)
Q Consensus 302 ~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~ 381 (627)
.++.|..|+||=+.=|.+-..|
T Consensus 567 ----------------------------------------------------------TgSADKnVKiWGLdFGDCHKS~ 588 (888)
T KOG0306|consen 567 ----------------------------------------------------------TGSADKNVKIWGLDFGDCHKSF 588 (888)
T ss_pred ----------------------------------------------------------eccCCCceEEeccccchhhhhh
Confidence 2356788999999999999999
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCC
Q 046828 382 RAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYS 461 (627)
Q Consensus 382 ~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg 461 (627)
-||...|.++.|-|...++.|++.||. |+-||-..- .++..| +||+. .|++++-+|+|
T Consensus 589 fAHdDSvm~V~F~P~~~~FFt~gKD~k-vKqWDg~kF-------------------e~iq~L-~~H~~-ev~cLav~~~G 646 (888)
T KOG0306|consen 589 FAHDDSVMSVQFLPKTHLFFTCGKDGK-VKQWDGEKF-------------------EEIQKL-DGHHS-EVWCLAVSPNG 646 (888)
T ss_pred hcccCceeEEEEcccceeEEEecCcce-EEeechhhh-------------------hhheee-ccchh-eeeeeEEcCCC
Confidence 999999999999999999999999997 899986411 255556 67754 69999999999
Q ss_pred CEEEEEeCCCeEEEEEcCC
Q 046828 462 QWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 462 ~~Las~S~dgTvhIw~i~~ 480 (627)
.+++++|.|.+|++|....
T Consensus 647 ~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 647 SFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred CeEEeccCCceeEeeeccC
Confidence 9999999999999998765
No 55
>PTZ00420 coronin; Provisional
Probab=99.65 E-value=1.1e-13 Score=156.18 Aligned_cols=222 Identities=11% Similarity=0.172 Sum_probs=146.4
Q ss_pred ccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCC
Q 046828 88 YSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGY 167 (627)
Q Consensus 88 y~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~ 167 (627)
..+-+++|+..... ....+..|.++|..+++.|.. ..+||..+
T Consensus 52 ~~gvI~L~~~~r~~-~v~~L~gH~~~V~~lafsP~~------------~~lLASgS------------------------ 94 (568)
T PTZ00420 52 LIGAIRLENQMRKP-PVIKLKGHTSSILDLQFNPCF------------SEILASGS------------------------ 94 (568)
T ss_pred ceeEEEeeecCCCc-eEEEEcCCCCCEEEEEEcCCC------------CCEEEEEe------------------------
Confidence 34558889877643 344566788999999987642 13554321
Q ss_pred CCCCCCCCCcCCcEEEEEECCCCc--------eEEEEe-cCCeEEEEEecC---cEEEEE-eCCeEEEEeCCCCceeEEE
Q 046828 168 DEPQPGNVAMSPTAVRFYSLRSHN--------YVHVLR-FRSTVYMVRCSP---RIVAVG-LAAQIYCFDALTLESKFSV 234 (627)
Q Consensus 168 ~~~~~~~~~~~~~tV~lwdl~t~~--------~V~tL~-f~s~V~sV~~s~---~~LaV~-~~~~I~i~D~~t~e~~~tl 234 (627)
.+++|+|||+.++. .+.++. +...|.+|+|++ .+|+++ .++.|+|||+.+++..+.+
T Consensus 95 ----------~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i 164 (568)
T PTZ00420 95 ----------EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI 164 (568)
T ss_pred ----------CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 24789999998652 344565 456899999998 355665 5678999999999877666
Q ss_pred EcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhc
Q 046828 235 LTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAA 314 (627)
Q Consensus 235 ~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~ 314 (627)
. ++.. +. .+++..+...
T Consensus 165 ~-~~~~-------------V~-------SlswspdG~l------------------------------------------ 181 (568)
T PTZ00420 165 N-MPKK-------------LS-------SLKWNIKGNL------------------------------------------ 181 (568)
T ss_pred e-cCCc-------------EE-------EEEECCCCCE------------------------------------------
Confidence 4 2211 11 2333321100
Q ss_pred ceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEE----
Q 046828 315 GLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISA---- 390 (627)
Q Consensus 315 gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~---- 390 (627)
+ +.+..|+.|+|||+.+++.+..+.+|...+.+
T Consensus 182 ---------------------------------------L----at~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~ 218 (568)
T PTZ00420 182 ---------------------------------------L----SGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIW 218 (568)
T ss_pred ---------------------------------------E----EEEecCCEEEEEECCCCcEEEEEecccCCceeEEEE
Confidence 0 02346889999999999999999999876543
Q ss_pred -EEECCCCCEEEEEeCCC---CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE
Q 046828 391 -LCFDRSGTLLVTASIHG---NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI 466 (627)
Q Consensus 391 -laFspdG~lLaTaS~dG---t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las 466 (627)
..|++++.+|+|++.++ ..|+|||+... +. ......+.. ....+...-+.+++.++++
T Consensus 219 ~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~------~~----------pl~~~~ld~--~~~~L~p~~D~~tg~l~ls 280 (568)
T PTZ00420 219 IDGLGGDDNYILSTGFSKNNMREMKLWDLKNT------TS----------ALVTMSIDN--ASAPLIPHYDESTGLIYLI 280 (568)
T ss_pred eeeEcCCCCEEEEEEcCCCCccEEEEEECCCC------CC----------ceEEEEecC--CccceEEeeeCCCCCEEEE
Confidence 34678999999988765 24899998611 11 012222211 1222444455667999999
Q ss_pred EeCCCeEEEEEcCC
Q 046828 467 VSSRGTCHIFVLTP 480 (627)
Q Consensus 467 ~S~dgTvhIw~i~~ 480 (627)
|+.|++|++|++..
T Consensus 281 GkGD~tIr~~e~~~ 294 (568)
T PTZ00420 281 GKGDGNCRYYQHSL 294 (568)
T ss_pred EECCCeEEEEEccC
Confidence 99999999999964
No 56
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=8e-15 Score=156.10 Aligned_cols=246 Identities=18% Similarity=0.211 Sum_probs=173.7
Q ss_pred CCCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCC
Q 046828 57 DSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSH 136 (627)
Q Consensus 57 ~~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~r 136 (627)
...++++.|...+|..- . +.=+++...-++|+|+..... +...+++-+..|..+.+ +...
T Consensus 21 ~~~ke~~~vssl~fsp~-----~-P~d~aVt~S~rvqly~~~~~~-~~k~~srFk~~v~s~~f-------------R~DG 80 (487)
T KOG0310|consen 21 PVHKEHNSVSSLCFSPK-----H-PYDFAVTSSVRVQLYSSVTRS-VRKTFSRFKDVVYSVDF-------------RSDG 80 (487)
T ss_pred ccccccCcceeEecCCC-----C-CCceEEecccEEEEEecchhh-hhhhHHhhccceeEEEe-------------ecCC
Confidence 34556677777777532 2 334556667899999988633 55666666666665554 3333
Q ss_pred CEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC---cEE
Q 046828 137 PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP---RIV 212 (627)
Q Consensus 137 pLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~---~~L 212 (627)
.|||. ||++ +.|++||+++...+..++ +..+|..+.|++ .++
T Consensus 81 ~Llaa--GD~s--------------------------------G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l 126 (487)
T KOG0310|consen 81 RLLAA--GDES--------------------------------GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTML 126 (487)
T ss_pred eEEEc--cCCc--------------------------------CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEE
Confidence 67653 4543 569999988877788887 556999999997 567
Q ss_pred EEEeCCe-EEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCC
Q 046828 213 AVGLAAQ-IYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSP 291 (627)
Q Consensus 213 aV~~~~~-I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~ 291 (627)
+.|.|++ +.+||+.+......+.+|..- + |..++.+.
T Consensus 127 ~s~sDd~v~k~~d~s~a~v~~~l~~htDY-------------V-------R~g~~~~~---------------------- 164 (487)
T KOG0310|consen 127 VSGSDDKVVKYWDLSTAYVQAELSGHTDY-------------V-------RCGDISPA---------------------- 164 (487)
T ss_pred EecCCCceEEEEEcCCcEEEEEecCCcce-------------e-------EeeccccC----------------------
Confidence 7777775 789999998875577776542 1 22222221
Q ss_pred CCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEE
Q 046828 292 STSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKD 371 (627)
Q Consensus 292 ~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD 371 (627)
++.+ + .++++||.|++||
T Consensus 165 -----~~hi-----------------------------------------------------v----vtGsYDg~vrl~D 182 (487)
T KOG0310|consen 165 -----NDHI-----------------------------------------------------V----VTGSYDGKVRLWD 182 (487)
T ss_pred -----CCeE-----------------------------------------------------E----EecCCCceEEEEE
Confidence 0000 0 1467999999999
Q ss_pred CCCC-eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC
Q 046828 372 IVSR-SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA 450 (627)
Q Consensus 372 ~~s~-~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a 450 (627)
+.+. ..+..| .|..||..+.|=|+|.++|||+ |..|+|||+. .|. +.+..+.. |. -
T Consensus 183 tR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~-------~G~-----------qll~~~~~-H~-K 239 (487)
T KOG0310|consen 183 TRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG--GNSVKVWDLT-------TGG-----------QLLTSMFN-HN-K 239 (487)
T ss_pred eccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC--CCeEEEEEec-------CCc-----------eehhhhhc-cc-c
Confidence 9988 445444 4899999999999999999998 5579999985 232 24443322 33 3
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 451 VIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 451 ~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
.|+|+++..|++.|.+++.|+-|+||++..+.-
T Consensus 240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred eEEEEEeecCCceEeecccccceEEEEccceEE
Confidence 599999999999999999999999999877643
No 57
>PTZ00421 coronin; Provisional
Probab=99.64 E-value=2.2e-13 Score=152.41 Aligned_cols=248 Identities=13% Similarity=0.159 Sum_probs=161.4
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC------CceEEeeecCCceEEEEEeeCCCCCCCCCCcC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT------NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFR 133 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~------~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~ 133 (627)
.|.+.|..+.|... ....+++.+.|+.++|||+...+ +....+..|...|.++.+.|...
T Consensus 73 GH~~~V~~v~fsP~-----d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~--------- 138 (493)
T PTZ00421 73 GQEGPIIDVAFNPF-----DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM--------- 138 (493)
T ss_pred CCCCCEEEEEEcCC-----CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC---------
Confidence 36788999999642 12568888889999999998643 12344566888899988876421
Q ss_pred CCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--c
Q 046828 134 NSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--R 210 (627)
Q Consensus 134 ~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~ 210 (627)
.+|+..+ .+++|+|||+++++.+.++. +...|.+|+|++ +
T Consensus 139 ---~iLaSgs----------------------------------~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 139 ---NVLASAG----------------------------------ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS 181 (493)
T ss_pred ---CEEEEEe----------------------------------CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC
Confidence 3554322 24789999999999999998 456899999987 6
Q ss_pred EEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSV 289 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~ 289 (627)
+|+++. +++|+|||+++++.+.++.+|.... ... +.+......
T Consensus 182 lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~------------~~~-------~~w~~~~~~----------------- 225 (493)
T PTZ00421 182 LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK------------SQR-------CLWAKRKDL----------------- 225 (493)
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEecCCCCc------------ceE-------EEEcCCCCe-----------------
Confidence 777765 6689999999999888887764320 000 111111000
Q ss_pred CCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE
Q 046828 290 SPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV 369 (627)
Q Consensus 290 s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I 369 (627)
+... +.+...|+.|+|
T Consensus 226 --------------------------ivt~--------------------------------------G~s~s~Dr~Vkl 241 (493)
T PTZ00421 226 --------------------------IITL--------------------------------------GCSKSQQRQIML 241 (493)
T ss_pred --------------------------EEEE--------------------------------------ecCCCCCCeEEE
Confidence 0000 002346899999
Q ss_pred EECCCCe-EEEEeccC-CCCeEEEEECCCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeec
Q 046828 370 KDIVSRS-VISQFRAH-TSPISALCFDRSGTLLVTASI-HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRG 446 (627)
Q Consensus 370 wD~~s~~-~l~~~~aH-~~~Is~laFspdG~lLaTaS~-dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG 446 (627)
||+.+.. ++..+..| ...+....|+++|.+|++++. ||+ |++||+. ++. .++.. ..
T Consensus 242 WDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~-Iriwdl~-------~~~------------~~~~~-~~ 300 (493)
T PTZ00421 242 WDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN-IRCFELM-------NER------------LTFCS-SY 300 (493)
T ss_pred EeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe-EEEEEee-------CCc------------eEEEe-ec
Confidence 9998754 44444434 345677789999999999885 886 8999996 221 22222 22
Q ss_pred CCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 447 MTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 447 ~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.....+..++|.|. +.+=...-.-.++|.+...
T Consensus 301 ~s~~~~~g~~~~pk--~~~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 301 SSVEPHKGLCMMPK--WSLDTRKCEIARFYALTYH 333 (493)
T ss_pred cCCCCCcceEeccc--ccccccceeeeEEEEecCC
Confidence 22334778888883 3333333444577777644
No 58
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.64 E-value=6.5e-14 Score=150.16 Aligned_cols=103 Identities=19% Similarity=0.205 Sum_probs=86.1
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
.+++|+.|.+|+=.--+--..++.|..-|.|+.|+|||.++||++.||+ |.|||=. +|. +
T Consensus 165 T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk-i~iyDGk-------tge------------~ 224 (603)
T KOG0318|consen 165 TGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK-IYIYDGK-------TGE------------K 224 (603)
T ss_pred eccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc-EEEEcCC-------Ccc------------E
Confidence 3567888888887666777788999999999999999999999999998 7999965 452 6
Q ss_pred EEEEee--cCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 440 LYKLHR--GMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 440 l~~l~r--G~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
+.+|.. +|+ ..|+.|+||||++.++++|.|.|++||++.....
T Consensus 225 vg~l~~~~aHk-GsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 225 VGELEDSDAHK-GSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred EEEecCCCCcc-ccEEEEEECCCCceEEEecCCceEEEEEeeccce
Confidence 777742 333 3499999999999999999999999999987643
No 59
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=4.7e-15 Score=166.09 Aligned_cols=207 Identities=13% Similarity=0.172 Sum_probs=150.6
Q ss_pred cEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccc
Q 046828 180 TAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYG 255 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~ 255 (627)
++|++||-+=+.+++.+. +.++|+.|.|.+ .+.|+|.++ +|++|+-.+.++++++.+|-.- +
T Consensus 31 G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY-------------V- 96 (1202)
T KOG0292|consen 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY-------------V- 96 (1202)
T ss_pred ceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccce-------------e-
Confidence 679999999999999986 677999999987 677888777 7999999999999999987431 1
Q ss_pred eeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecccc
Q 046828 256 PMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFI 335 (627)
Q Consensus 256 ~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~ 335 (627)
|-+.|-..-
T Consensus 97 ------Rt~~FHhey----------------------------------------------------------------- 105 (1202)
T KOG0292|consen 97 ------RTVFFHHEY----------------------------------------------------------------- 105 (1202)
T ss_pred ------EEeeccCCC-----------------------------------------------------------------
Confidence 222221110
Q ss_pred CCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 336 PDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 336 p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
.|- .+++.|.+|+||+.+++++++.+.+|..-|-|-+|.|...++++||-|-| |||||+
T Consensus 106 ------------PWI--------lSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT-VRVWDi 164 (1202)
T KOG0292|consen 106 ------------PWI--------LSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT-VRVWDI 164 (1202)
T ss_pred ------------ceE--------EEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccce-EEEEee
Confidence 011 13457889999999999999999999999999999999999999999987 899998
Q ss_pred CCCCCCCCCCCCc----------cccCCCC-ceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC-
Q 046828 416 MPSSSKGRSGSAS----------QTYDWTS-SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG- 483 (627)
Q Consensus 416 ~p~~~~~~~g~~~----------~~~~~~~-~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg- 483 (627)
. .-..+ +-.++ .+.++-. .-.-+.....||+.. |+-++|.|.--.|++|++|.-|++|.++....
T Consensus 165 s-GLRkk-~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG-VNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 165 S-GLRKK-NKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG-VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 241 (1202)
T ss_pred c-chhcc-CCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc-cceEEecCCcceEEecCCcceeeEEEeccccce
Confidence 5 11000 00000 0111110 001122234788875 89999999999999999999999999987642
Q ss_pred -eeeccccccccc
Q 046828 484 -ETVLQIQNSHVD 495 (627)
Q Consensus 484 -~~~~~~h~s~v~ 495 (627)
.-+.+.|..-|.
T Consensus 242 EvDtcrgH~nnVs 254 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVS 254 (1202)
T ss_pred eehhhhcccCCcc
Confidence 223456654443
No 60
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.64 E-value=1.3e-13 Score=137.75 Aligned_cols=257 Identities=13% Similarity=0.124 Sum_probs=166.4
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
|.-++..++|++ ++..++.++-|....||=-.+ ++..-.+-.|.|.|-++.+.-.. ..
T Consensus 9 HERplTqiKyN~------eGDLlFscaKD~~~~vw~s~n-GerlGty~GHtGavW~~Did~~s-------------~~-- 66 (327)
T KOG0643|consen 9 HERPLTQIKYNR------EGDLLFSCAKDSTPTVWYSLN-GERLGTYDGHTGAVWCCDIDWDS-------------KH-- 66 (327)
T ss_pred CccccceEEecC------CCcEEEEecCCCCceEEEecC-CceeeeecCCCceEEEEEecCCc-------------ce--
Confidence 445677888876 247899999999999998876 43344445678888777764321 12
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCC
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAA 218 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~ 218 (627)
+++ | ..+.+++|||.++|+++.+++++++|..+.|+. .+++++.++
T Consensus 67 liT-------G-------------------------SAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~ 114 (327)
T KOG0643|consen 67 LIT-------G-------------------------SADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDK 114 (327)
T ss_pred eee-------c-------------------------cccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehh
Confidence 233 1 135789999999999999999999999999997 555555543
Q ss_pred ------eEEEEeCCCCce-------eEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCC
Q 046828 219 ------QIYCFDALTLES-------KFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLT 285 (627)
Q Consensus 219 ------~I~i~D~~t~e~-------~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t 285 (627)
.|.+||++.... .+.|.++ .+......||-+
T Consensus 115 ~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~------------------------------~skit~a~Wg~l------ 158 (327)
T KOG0643|consen 115 QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP------------------------------DSKITSALWGPL------ 158 (327)
T ss_pred hcCcceEEEEEEccCChhhhcccCceEEecCC------------------------------ccceeeeeeccc------
Confidence 388999874331 1122111 111111111100
Q ss_pred CCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCC
Q 046828 286 PPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAG 365 (627)
Q Consensus 286 ~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG 365 (627)
+.+. ..+.++|
T Consensus 159 ------------------------------------------------------------------~~~i---i~Ghe~G 169 (327)
T KOG0643|consen 159 ------------------------------------------------------------------GETI---IAGHEDG 169 (327)
T ss_pred ------------------------------------------------------------------CCEE---EEecCCC
Confidence 1000 1357899
Q ss_pred eEEEEECCCCe-EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCC--------CCC------------
Q 046828 366 MVVVKDIVSRS-VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSK--------GRS------------ 424 (627)
Q Consensus 366 ~V~IwD~~s~~-~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~--------~~~------------ 424 (627)
.|.+||+.+++ .+...+-|.+.|+.|+|+||.++++|+|.|-+ -++||... -.. .++
T Consensus 170 ~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~t-l~v~Kty~te~PvN~aaisP~~d~Vi 247 (327)
T KOG0643|consen 170 SISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT-AKLVDVRT-LEVLKTYTTERPVNTAAISPLLDHVI 247 (327)
T ss_pred cEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc-ceeeeccc-eeeEEEeeecccccceecccccceEE
Confidence 99999999974 45566889999999999999999999999987 69998752 100 000
Q ss_pred -CCCccccCCCCceeEEEEE---------------eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 425 -GSASQTYDWTSSHVHLYKL---------------HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 425 -g~~~~~~~~~~~~~~l~~l---------------~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
|.+.-+.+..+...+.-++ ..||= ..|++|+|+|||+-.++|+.||.|+|...+
T Consensus 248 lgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF-GPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 248 LGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF-GPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc-cCcceeEECCCCcccccCCCCceEEEEEec
Confidence 0000001111100011000 12432 459999999999999999999999886544
No 61
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.63 E-value=1.8e-14 Score=143.39 Aligned_cols=244 Identities=18% Similarity=0.219 Sum_probs=168.4
Q ss_pred CCCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeee-cCCceEEEEEeeCCCCCCCCCCcCCC
Q 046828 57 DSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSR-RDDPVTFLQMQPLPAKSDGQEGFRNS 135 (627)
Q Consensus 57 ~~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~-~dG~V~~v~~lp~p~~~~~~D~f~~~ 135 (627)
+...+..+|.-+.|+- .+.++..+..++.+.||+++...-..++..+ |.+.|--+...|..
T Consensus 15 ~~~~~~~~v~Sv~wn~------~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~------------ 76 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNC------DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH------------ 76 (313)
T ss_pred HhhhhhhcceEEEEcc------cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC------------
Confidence 4455677888888873 2378888999999999999986544455443 33454333333321
Q ss_pred CCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEE
Q 046828 136 HPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVA 213 (627)
Q Consensus 136 rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~La 213 (627)
-++++.+. .+.+|++||.+++++++.+.-+..=..+.++| ..++
T Consensus 77 ~d~~atas----------------------------------~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~ 122 (313)
T KOG1407|consen 77 PDLFATAS----------------------------------GDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIA 122 (313)
T ss_pred CcceEEec----------------------------------CCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEE
Confidence 15555443 23789999999999999998777656678887 5666
Q ss_pred EE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 214 VG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 214 V~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
++ -++.|.++|+++.+..... +.+. -++-++. . .+
T Consensus 123 ~~~kdD~it~id~r~~~~~~~~---~~~~-----------e~ne~~w-------~-~~---------------------- 158 (313)
T KOG1407|consen 123 VGNKDDRITFIDARTYKIVNEE---QFKF-----------EVNEISW-------N-NS---------------------- 158 (313)
T ss_pred EecCcccEEEEEecccceeehh---cccc-----------eeeeeee-------c-CC----------------------
Confidence 55 5778999999987654322 1110 0111111 1 00
Q ss_pred CCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI 372 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~ 372 (627)
+++ + | ....-|.|.|-..
T Consensus 159 ---------------------------nd~-------F-----------------------f-----lt~GlG~v~ILsy 176 (313)
T KOG1407|consen 159 ---------------------------NDL-------F-----------------------F-----LTNGLGCVEILSY 176 (313)
T ss_pred ---------------------------CCE-------E-----------------------E-----EecCCceEEEEec
Confidence 000 0 0 0124588999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcE
Q 046828 373 VSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVI 452 (627)
Q Consensus 373 ~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I 452 (627)
...+++..|+||.+.+-||.|+|+|++||+||.|.. +-+||+. +- .++.-+-| + ...|
T Consensus 177 psLkpv~si~AH~snCicI~f~p~GryfA~GsADAl-vSLWD~~-EL------------------iC~R~isR-l-dwpV 234 (313)
T KOG1407|consen 177 PSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL-VSLWDVD-EL------------------ICERCISR-L-DWPV 234 (313)
T ss_pred cccccccccccCCcceEEEEECCCCceEeeccccce-eeccChh-Hh------------------hhheeecc-c-cCce
Confidence 999999999999999999999999999999999975 7999985 21 12222322 2 2359
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 453 QDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 453 ~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
..|+||.||++||++|.|--|-|=.++.
T Consensus 235 RTlSFS~dg~~lASaSEDh~IDIA~vet 262 (313)
T KOG1407|consen 235 RTLSFSHDGRMLASASEDHFIDIAEVET 262 (313)
T ss_pred EEEEeccCcceeeccCccceEEeEeccc
Confidence 9999999999999999999888777654
No 62
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=2.3e-13 Score=136.28 Aligned_cols=261 Identities=14% Similarity=0.152 Sum_probs=167.6
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC--ceEEee-ecCCceEEEEEeeCCCCCCCCCCcCC
Q 046828 58 SHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN--VSELVS-RRDDPVTFLQMQPLPAKSDGQEGFRN 134 (627)
Q Consensus 58 ~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~--~~ells-~~dG~V~~v~~lp~p~~~~~~D~f~~ 134 (627)
...++++|.-+.|.. ..+..+...|.++.++||+...... .+.++. .|.-.||-+++.|..
T Consensus 10 ~~gh~~r~W~~awhp-----~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g----------- 73 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHP-----GKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG----------- 73 (312)
T ss_pred ecCCCCcEEEEEecc-----CCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC-----------
Confidence 456778887788853 2234677789999999999995332 233332 355667778877653
Q ss_pred CCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCC--ceEEEEec-CCeEEEEEecC--
Q 046828 135 SHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSH--NYVHVLRF-RSTVYMVRCSP-- 209 (627)
Q Consensus 135 ~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~--~~V~tL~f-~s~V~sV~~s~-- 209 (627)
.+||... .+.++.||.-..+ +++.+|+. .++|.+|++|.
T Consensus 74 --~~La~aS----------------------------------FD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG 117 (312)
T KOG0645|consen 74 --RYLASAS----------------------------------FDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG 117 (312)
T ss_pred --cEEEEee----------------------------------ccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC
Confidence 4655321 3578899976654 57889985 56999999986
Q ss_pred cEEEEEeCC-eEEEEeCCCCc---eeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCC
Q 046828 210 RIVAVGLAA-QIYCFDALTLE---SKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQS 283 (627)
Q Consensus 210 ~~LaV~~~~-~I~i~D~~t~e---~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~ 283 (627)
++||.+.-+ .|.||.+...+ +.-.|..|..- +--+...| ..|+
T Consensus 118 ~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD-------------VK~V~WHPt~dlL~------------------ 166 (312)
T KOG0645|consen 118 NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD-------------VKHVIWHPTEDLLF------------------ 166 (312)
T ss_pred CEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc-------------ccEEEEcCCcceeE------------------
Confidence 899999866 59999887433 23333333221 11111111 1111
Q ss_pred CCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCC
Q 046828 284 LTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDI 363 (627)
Q Consensus 284 ~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~ 363 (627)
+.++
T Consensus 167 ----------------------------------------------------------------------------S~SY 170 (312)
T KOG0645|consen 167 ----------------------------------------------------------------------------SCSY 170 (312)
T ss_pred ----------------------------------------------------------------------------Eecc
Confidence 3457
Q ss_pred CCeEEEEECCC---CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCC---CCCCCC-------CC-----
Q 046828 364 AGMVVVKDIVS---RSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMP---SSSKGR-------SG----- 425 (627)
Q Consensus 364 dG~V~IwD~~s---~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p---~~~~~~-------~g----- 425 (627)
|.+|++|+-.. -.++++|.+|...|-+++|+|.|..|+++++|++ ++||.... ..+.+. +|
T Consensus 171 DnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ 249 (312)
T KOG0645|consen 171 DNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYTDLSGMHSRALYDVPWDNGVIASG 249 (312)
T ss_pred CCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeeccCcchhcccceEeeeecccceEec
Confidence 88899887662 2679999999999999999999999999999998 79998321 111000 00
Q ss_pred CCc------c-ccCCCCce-eEEEEEeecCCcCcEEEEEEccC-CCEEEEEeCCCeEEEEEcC
Q 046828 426 SAS------Q-TYDWTSSH-VHLYKLHRGMTSAVIQDICFSHY-SQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 426 ~~~------~-~~~~~~~~-~~l~~l~rG~t~a~I~sIaFSpD-g~~Las~S~dgTvhIw~i~ 479 (627)
.+. + +..+..+. .++.+. .+.+.-.|++|.|.|. +..|+++++||+|++|.+.
T Consensus 250 ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 250 GGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 000 0 00000000 111111 1222235999999995 7899999999999999875
No 63
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.7e-14 Score=156.93 Aligned_cols=262 Identities=17% Similarity=0.174 Sum_probs=179.3
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
+-+|..=|.+.++|||.++-..|+ -+.-.+-|||..+++..- .-+ +++.|
T Consensus 26 Pw~la~LynG~V~IWnyetqtmVk-sfeV~~~PvRa~kfiaRk-------------nWi-v~GsD--------------- 75 (794)
T KOG0276|consen 26 PWILAALYNGDVQIWNYETQTMVK-SFEVSEVPVRAAKFIARK-------------NWI-VTGSD--------------- 75 (794)
T ss_pred ceEEEeeecCeeEEEecccceeee-eeeecccchhhheeeecc-------------ceE-EEecC---------------
Confidence 567777788899999999844332 233457788887777543 333 23211
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEeCC-eEEEEeCCCC-ceeEEEE
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGLAA-QIYCFDALTL-ESKFSVL 235 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~-e~~~tl~ 235 (627)
+-.||+|+..|++.|++++ +..-|++|++.| -.+.++.++ .|++||-... .+.++++
T Consensus 76 ------------------D~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe 137 (794)
T KOG0276|consen 76 ------------------DMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE 137 (794)
T ss_pred ------------------CceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc
Confidence 2559999999999999999 556999999988 466666666 7999998764 4567888
Q ss_pred cCCCCCCCCCCCcCcccccceeeEcC---ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhh
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVGP---RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQL 312 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~~---r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l 312 (627)
+|..- +-.+++.| .-.|.++-+.++..|.-.++. | .+.++.
T Consensus 138 GH~Hy-------------VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~----~---------------nfTl~g---- 181 (794)
T KOG0276|consen 138 GHEHY-------------VMQVAFNPKDPNTFASASLDRTVKVWSLGSPH----P---------------NFTLEG---- 181 (794)
T ss_pred CcceE-------------EEEEEecCCCccceeeeeccccEEEEEcCCCC----C---------------ceeeec----
Confidence 87532 23356665 577777777777666432210 0 001111
Q ss_pred hcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEE
Q 046828 313 AAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALC 392 (627)
Q Consensus 313 ~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~la 392 (627)
-+.|...+.-|-.+..| ...++..|-+|+|||.+++.++.++.+|+..|++++
T Consensus 182 -------HekGVN~Vdyy~~gdkp--------------------ylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~ 234 (794)
T KOG0276|consen 182 -------HEKGVNCVDYYTGGDKP--------------------YLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVF 234 (794)
T ss_pred -------cccCcceEEeccCCCcc--------------------eEEecCCCceEEEeecchHHHHHHhhcccccceEEE
Confidence 12333334322111000 112567899999999999999999999999999999
Q ss_pred ECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCe
Q 046828 393 FDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGT 472 (627)
Q Consensus 393 FspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgT 472 (627)
|.|.=.+++|||+||| +|||..... +....|.-|. .+|++|+--+.+..+++|.+.|.
T Consensus 235 fhp~lpiiisgsEDGT-vriWhs~Ty-------------------~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~ 292 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGT-VRIWNSKTY-------------------KLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGS 292 (794)
T ss_pred ecCCCcEEEEecCCcc-EEEecCcce-------------------ehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCc
Confidence 9999999999999999 799986411 1111222233 35899999999999999988887
Q ss_pred EEE
Q 046828 473 CHI 475 (627)
Q Consensus 473 vhI 475 (627)
|.|
T Consensus 293 i~v 295 (794)
T KOG0276|consen 293 VTV 295 (794)
T ss_pred EEE
Confidence 653
No 64
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.8e-14 Score=142.92 Aligned_cols=193 Identities=19% Similarity=0.226 Sum_probs=136.5
Q ss_pred CcEEEEEECC-CCceEEEEe-cCCeEEEEEecC---cEE-EEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccc
Q 046828 179 PTAVRFYSLR-SHNYVHVLR-FRSTVYMVRCSP---RIV-AVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNI 252 (627)
Q Consensus 179 ~~tV~lwdl~-t~~~V~tL~-f~s~V~sV~~s~---~~L-aV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~ 252 (627)
+++++|||+. ...+|+.++ +..+|++|..+. +.+ .++-+++|++||..-.+.+.|+.+|..-
T Consensus 82 DGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~------------ 149 (311)
T KOG0277|consen 82 DGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSC------------ 149 (311)
T ss_pred CceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccE------------
Confidence 3679999963 445788887 566999999985 344 4445889999999877777777665321
Q ss_pred ccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 253 GYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 253 ~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
.|... .+|...++
T Consensus 150 ------------Iy~a~-----------------------~sp~~~nl-------------------------------- 162 (311)
T KOG0277|consen 150 ------------IYQAA-----------------------FSPHIPNL-------------------------------- 162 (311)
T ss_pred ------------EEEEe-----------------------cCCCCCCe--------------------------------
Confidence 11110 00000000
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEEE
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDR-SGTLLVTASIHGNNIN 411 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~ 411 (627)
| ++++.||..+|||++.......|.+|...|.+..|+. +-.+|+|++.|+. ||
T Consensus 163 ---------------------f----as~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr 216 (311)
T KOG0277|consen 163 ---------------------F----ASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VR 216 (311)
T ss_pred ---------------------E----EEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EE
Confidence 0 1346789999999986544445999999999999998 5678999999987 89
Q ss_pred EEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCCCe-eeccc
Q 046828 412 IFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTPFGGE-TVLQI 489 (627)
Q Consensus 412 Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~gg~-~~~~~ 489 (627)
+||+. .-. .++.+| .||.-| |..|+||| -...||++|.|-|++||+.....+. .....
T Consensus 217 ~wDir-~~r-----------------~pl~eL-~gh~~A-VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~ 276 (311)
T KOG0277|consen 217 GWDIR-NLR-----------------TPLFEL-NGHGLA-VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDH 276 (311)
T ss_pred EEehh-hcc-----------------ccceee-cCCceE-EEEEecCcchhhHhhhccccceEEecccccchhhhhhhhc
Confidence 99996 211 367888 677765 99999999 4568999999999999998854433 34445
Q ss_pred ccccccC
Q 046828 490 QNSHVDR 496 (627)
Q Consensus 490 h~s~v~~ 496 (627)
|...+-|
T Consensus 277 HtEFv~g 283 (311)
T KOG0277|consen 277 HTEFVCG 283 (311)
T ss_pred cceEEec
Confidence 5444433
No 65
>PTZ00420 coronin; Provisional
Probab=99.62 E-value=4.1e-13 Score=151.72 Aligned_cols=129 Identities=7% Similarity=0.086 Sum_probs=96.8
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC-------ceEEeeecCCceEEEEEeeCCCCCCCCCCc
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN-------VSELVSRRDDPVTFLQMQPLPAKSDGQEGF 132 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~-------~~ells~~dG~V~~v~~lp~p~~~~~~D~f 132 (627)
.|.+.|..+.|... ....+++.|.|+.++|||+...+. ....+..|.+.|..+.+.|..
T Consensus 72 gH~~~V~~lafsP~-----~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g--------- 137 (568)
T PTZ00420 72 GHTSSILDLQFNPC-----FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN--------- 137 (568)
T ss_pred CCCCCEEEEEEcCC-----CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC---------
Confidence 46788999999532 125677888899999999986432 122456688889988887642
Q ss_pred CCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--c
Q 046828 133 RNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--R 210 (627)
Q Consensus 133 ~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~ 210 (627)
..+++.+ + .+++|+|||+++++.+.++.++..|.++.|++ +
T Consensus 138 ----~~iLaSg-------S--------------------------~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~ 180 (568)
T PTZ00420 138 ----YYIMCSS-------G--------------------------FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGN 180 (568)
T ss_pred ----CeEEEEE-------e--------------------------CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCC
Confidence 2232222 0 13789999999999999998888999999986 7
Q ss_pred EEEEEe-CCeEEEEeCCCCceeEEEEcCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLESKFSVLTYPV 239 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~ 239 (627)
+|+++. +++|+|||+++++.+.++.+|..
T Consensus 181 lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g 210 (568)
T PTZ00420 181 LLSGTCVGKHMHIIDPRKQEIASSFHIHDG 210 (568)
T ss_pred EEEEEecCCEEEEEECCCCcEEEEEecccC
Confidence 777765 66899999999999888887753
No 66
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=2.6e-13 Score=135.85 Aligned_cols=175 Identities=22% Similarity=0.297 Sum_probs=135.2
Q ss_pred CcEEEEEECCC---CceEEEEe--cCCeEEEEEecC--cEEEEEe-CCeEEEEeCC--CCceeEEEEcCCCCCCCCCCCc
Q 046828 179 PTAVRFYSLRS---HNYVHVLR--FRSTVYMVRCSP--RIVAVGL-AAQIYCFDAL--TLESKFSVLTYPVPHFGGQGTS 248 (627)
Q Consensus 179 ~~tV~lwdl~t---~~~V~tL~--f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~--t~e~~~tl~~~p~~~~~~~g~~ 248 (627)
+++||+|++.. -.+...|. +.-.|++|+++| ++||++. +.++.||.=. ++|++-+|++|.+.
T Consensus 36 Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE-------- 107 (312)
T KOG0645|consen 36 DKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENE-------- 107 (312)
T ss_pred CceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccc--------
Confidence 48899999984 33445554 344999999987 8999885 6689999755 56788899999875
Q ss_pred CcccccceeeEc--CceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeE
Q 046828 249 GVNIGYGPMAVG--PRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKT 326 (627)
Q Consensus 249 ~~~~~~~~iAl~--~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~ 326 (627)
+-.+|++ +++||.++.
T Consensus 108 -----VK~Vaws~sG~~LATCSR--------------------------------------------------------- 125 (312)
T KOG0645|consen 108 -----VKCVAWSASGNYLATCSR--------------------------------------------------------- 125 (312)
T ss_pred -----eeEEEEcCCCCEEEEeeC---------------------------------------------------------
Confidence 3445553 477777764
Q ss_pred EeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC---eEEEEeccCCCCeEEEEECCCCCEEEEE
Q 046828 327 LSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR---SVISQFRAHTSPISALCFDRSGTLLVTA 403 (627)
Q Consensus 327 ~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~---~~l~~~~aH~~~Is~laFspdG~lLaTa 403 (627)
|..|-||.+... +++..++.|+..|--+.|+|.-.+|+++
T Consensus 126 -------------------------------------DKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~ 168 (312)
T KOG0645|consen 126 -------------------------------------DKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSC 168 (312)
T ss_pred -------------------------------------CCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEe
Confidence 344666665532 5788999999999999999999999999
Q ss_pred eCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 404 SIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 404 S~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
|-|.+ |++|+-.+. + +| ..+..| .|+++ .|.+++|.++|..|+++++|+|++||..-
T Consensus 169 SYDnT-Ik~~~~~~d------d------dW----~c~~tl-~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 169 SYDNT-IKVYRDEDD------D------DW----ECVQTL-DGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred ccCCe-EEEEeecCC------C------Ce----eEEEEe-cCccc-eEEEEEecCCCceEEEecCCcceEeeeec
Confidence 99988 899986531 1 22 244444 67765 69999999999999999999999999964
No 67
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.61 E-value=1e-13 Score=143.88 Aligned_cols=264 Identities=14% Similarity=0.165 Sum_probs=169.5
Q ss_pred CCeEEEEeccCcEEEEecCCCCCceEEeeecCCceE-EEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeecc
Q 046828 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVT-FLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVG 158 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~-~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~ 158 (627)
.+.+|...||+..+|||.. ++...++..|.|+++ ++-+.+++.. .++ +.+
T Consensus 115 ~~~IltgsYDg~~riWd~~--Gk~~~~~~Ght~~ik~v~~v~~n~~~-----------~~f-vsa--------------- 165 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK--GKSIKTIVGHTGPIKSVAWVIKNSSS-----------CLF-VSA--------------- 165 (423)
T ss_pred CceEEEeecCCeeEEEecC--CceEEEEecCCcceeeeEEEecCCcc-----------ceE-EEe---------------
Confidence 5889999999999999987 455778888999997 4445665521 122 222
Q ss_pred CcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEE-----ecCCeEEEEEecC--cEEEEE-eCCeEEEEeCCCCce
Q 046828 159 RDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVL-----RFRSTVYMVRCSP--RIVAVG-LAAQIYCFDALTLES 230 (627)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL-----~f~s~V~sV~~s~--~~LaV~-~~~~I~i~D~~t~e~ 230 (627)
..+.++++|-.+-++.+-.. .+...|-+|+..+ .+++++ -+..|.||+. ..+.
T Consensus 166 ------------------s~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~-~~~~ 226 (423)
T KOG0313|consen 166 ------------------SMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSV-ETDE 226 (423)
T ss_pred ------------------cCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeeccc-CCCc
Confidence 13478999998887754332 2445899999865 555665 4668999993 2222
Q ss_pred eEEEEcCCCCCCC---CCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhh
Q 046828 231 KFSVLTYPVPHFG---GQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVE 307 (627)
Q Consensus 231 ~~tl~~~p~~~~~---~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~ 307 (627)
.-+++...+.... ..... ....|.+.+.| ++.|
T Consensus 227 ~~~~E~~s~~rrk~~~~~~~~------------------~~r~P~vtl~G------Ht~~-------------------- 262 (423)
T KOG0313|consen 227 EDELESSSNRRRKKQKREKEG------------------GTRTPLVTLEG------HTEP-------------------- 262 (423)
T ss_pred cccccccchhhhhhhhhhhcc------------------cccCceEEecc------cccc--------------------
Confidence 3333322211000 00000 00011111111 1111
Q ss_pred hhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCC
Q 046828 308 SSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSP 387 (627)
Q Consensus 308 ~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~ 387 (627)
++. ..|.. +++..+++.|.+|++||+.+++.+..+.. ..+
T Consensus 263 -------------------Vs~-----------------V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ks 302 (423)
T KOG0313|consen 263 -------------------VSS-----------------VVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKS 302 (423)
T ss_pred -------------------eee-----------------EEEcC---CCceEeecccceEEEEEeecccceeeeec-Ccc
Confidence 000 00110 01112467899999999999998888775 457
Q ss_pred eEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEcc-CCCEEEE
Q 046828 388 ISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSH-YSQWIAI 466 (627)
Q Consensus 388 Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSp-Dg~~Las 466 (627)
+.++..+|...+||+||.|.+ ||+||-. .+ .|. .-.+.| -||++ .|.++.|+| +-..|++
T Consensus 303 l~~i~~~~~~~Ll~~gssdr~-irl~DPR-~~----~gs-----------~v~~s~-~gH~n-wVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 303 LNCISYSPLSKLLASGSSDRH-IRLWDPR-TG----DGS-----------VVSQSL-IGHKN-WVSSVKWSPTNEFQLVS 363 (423)
T ss_pred eeEeecccccceeeecCCCCc-eeecCCC-CC----CCc-----------eeEEee-ecchh-hhhheecCCCCceEEEE
Confidence 999999999999999999987 8999954 11 221 122333 68876 799999999 5567889
Q ss_pred EeCCCeEEEEEcCCCC-Ceeecccccccc
Q 046828 467 VSSRGTCHIFVLTPFG-GETVLQIQNSHV 494 (627)
Q Consensus 467 ~S~dgTvhIw~i~~~g-g~~~~~~h~s~v 494 (627)
+|.|+|+++||+.... ....+.+|+..+
T Consensus 364 ~S~D~t~klWDvRS~k~plydI~~h~DKv 392 (423)
T KOG0313|consen 364 GSYDNTVKLWDVRSTKAPLYDIAGHNDKV 392 (423)
T ss_pred EecCCeEEEEEeccCCCcceeeccCCceE
Confidence 9999999999998765 666788886544
No 68
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=4.4e-14 Score=147.75 Aligned_cols=281 Identities=16% Similarity=0.201 Sum_probs=176.7
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC---ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN---VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNS 135 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~---~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~ 135 (627)
.++.|+|.++.|-- .++.+....-|.+.-+|++..-.. ...++ .|..+|.++.+.|.-
T Consensus 221 ~~htdEVWfl~FS~------nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv-gh~~~V~yi~wSPDd------------ 281 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSH------NGKYLASASKDSTAIIWIVVYDVHFKLKKTLV-GHSQPVSYIMWSPDD------------ 281 (519)
T ss_pred hhCCCcEEEEEEcC------CCeeEeeccCCceEEEEEEecCcceeeeeeee-cccCceEEEEECCCC------------
Confidence 46788999999952 335666666788999999988665 23333 466788999998763
Q ss_pred CCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC--CeEEEEEecC--cE
Q 046828 136 HPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR--STVYMVRCSP--RI 211 (627)
Q Consensus 136 rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~--s~V~sV~~s~--~~ 211 (627)
|-| +.|++ +..+++||..||+..+.+... ..+.++++.| ..
T Consensus 282 ryL-laCg~----------------------------------~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~ 326 (519)
T KOG0293|consen 282 RYL-LACGF----------------------------------DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR 326 (519)
T ss_pred CeE-EecCc----------------------------------hHheeeccCCcchhhhhcccCcCCCcceeEEccCCce
Confidence 233 33331 134999999999999988754 4788888887 44
Q ss_pred EEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCC
Q 046828 212 VAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPS 288 (627)
Q Consensus 212 LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~ 288 (627)
+++| .+.+|+-||+.- +.+...++-..|. +..+|+.+ .|+-....++.+.+.
T Consensus 327 ~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~------------v~dlait~Dgk~vl~v~~d~~i~l~------------ 381 (519)
T KOG0293|consen 327 FVTGSPDRTIIMWDLDG-NILGNWEGVRDPK------------VHDLAITYDGKYVLLVTVDKKIRLY------------ 381 (519)
T ss_pred eEecCCCCcEEEecCCc-chhhcccccccce------------eEEEEEcCCCcEEEEEecccceeee------------
Confidence 5555 566899999854 3343433322221 33455533 444333333322211
Q ss_pred CCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEE
Q 046828 289 VSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVV 368 (627)
Q Consensus 289 ~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~ 368 (627)
-+++.... ++... +.+ ++++. .| +.|.++. ..-.+..|+
T Consensus 382 ----------------~~e~~~dr--~lise-~~~---its~~-----------iS-----~d~k~~L---vnL~~qei~ 420 (519)
T KOG0293|consen 382 ----------------NREARVDR--GLISE-EQP---ITSFS-----------IS-----KDGKLAL---VNLQDQEIH 420 (519)
T ss_pred ----------------chhhhhhh--ccccc-cCc---eeEEE-----------Ec-----CCCcEEE---EEcccCeeE
Confidence 11111100 00000 011 11110 00 1122210 113577899
Q ss_pred EEECCCCeEEEEeccCCCC--eEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee
Q 046828 369 VKDIVSRSVISQFRAHTSP--ISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR 445 (627)
Q Consensus 369 IwD~~s~~~l~~~~aH~~~--Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r 445 (627)
+||++..+.+..+.+|... |-.=||-- +.+++|+||+|+. |+||+.. +|. .+..| .
T Consensus 421 LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~-------sgk------------ll~~L-s 479 (519)
T KOG0293|consen 421 LWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRI-------SGK------------LLAVL-S 479 (519)
T ss_pred EeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEcc-------CCc------------eeEee-c
Confidence 9999988888889999754 33346754 4589999999998 8999975 442 44444 8
Q ss_pred cCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCC
Q 046828 446 GMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 446 G~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~ 481 (627)
||.. .|.+++|+| |-.++|++|+||||+||...+.
T Consensus 480 GHs~-~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 480 GHSK-TVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCcc-eeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9875 499999999 7789999999999999998764
No 69
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.60 E-value=2.4e-13 Score=135.54 Aligned_cols=230 Identities=16% Similarity=0.208 Sum_probs=166.7
Q ss_pred eccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCC
Q 046828 71 DKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNS 150 (627)
Q Consensus 71 d~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~ 150 (627)
|++-+++....+++...-++.+++||+-.++...++..+ |.--.+.+.|.- ..+++..
T Consensus 68 dql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~--~eni~i~wsp~g-------------~~~~~~~------- 125 (313)
T KOG1407|consen 68 DQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK--GENINITWSPDG-------------EYIAVGN------- 125 (313)
T ss_pred hhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc--CcceEEEEcCCC-------------CEEEEec-------
Confidence 444445556688888888999999999987755555442 222344454432 3444421
Q ss_pred cceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cE-EEEEeCCeEEEEeCCC
Q 046828 151 GLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RI-VAVGLAAQIYCFDALT 227 (627)
Q Consensus 151 g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~-LaV~~~~~I~i~D~~t 227 (627)
-+..|.+.|.++.+.+++.+|...+..+.++- ++ ++...-+.|.|..-..
T Consensus 126 ---------------------------kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps 178 (313)
T KOG1407|consen 126 ---------------------------KDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS 178 (313)
T ss_pred ---------------------------CcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccc
Confidence 12569999999999999999998888888864 33 3444457899999999
Q ss_pred CceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhh
Q 046828 228 LESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYA 305 (627)
Q Consensus 228 ~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a 305 (627)
+|.+++|..||.. .-.|.++| |++|.++
T Consensus 179 Lkpv~si~AH~sn-------------CicI~f~p~GryfA~Gs------------------------------------- 208 (313)
T KOG1407|consen 179 LKPVQSIKAHPSN-------------CICIEFDPDGRYFATGS------------------------------------- 208 (313)
T ss_pred cccccccccCCcc-------------eEEEEECCCCceEeecc-------------------------------------
Confidence 9999999988742 22355544 5555543
Q ss_pred hhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCC
Q 046828 306 VESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHT 385 (627)
Q Consensus 306 ~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~ 385 (627)
.|-.|.+||+...-++..|..|.
T Consensus 209 ---------------------------------------------------------ADAlvSLWD~~ELiC~R~isRld 231 (313)
T KOG1407|consen 209 ---------------------------------------------------------ADALVSLWDVDELICERCISRLD 231 (313)
T ss_pred ---------------------------------------------------------ccceeeccChhHhhhheeecccc
Confidence 45568899999988999999999
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEE
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIA 465 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~La 465 (627)
-||..|+||.||++||+||+|- .|-|=+++ +|. ++++.. ..+.-..++|.|....||
T Consensus 232 wpVRTlSFS~dg~~lASaSEDh-~IDIA~ve-------tGd------------~~~eI~---~~~~t~tVAWHPk~~LLA 288 (313)
T KOG1407|consen 232 WPVRTLSFSHDGRMLASASEDH-FIDIAEVE-------TGD------------RVWEIP---CEGPTFTVAWHPKRPLLA 288 (313)
T ss_pred CceEEEEeccCcceeeccCccc-eEEeEecc-------cCC------------eEEEee---ccCCceeEEecCCCceee
Confidence 9999999999999999999994 35444443 452 667664 344578999999999999
Q ss_pred EEeCC---------CeEEEEEcC
Q 046828 466 IVSSR---------GTCHIFVLT 479 (627)
Q Consensus 466 s~S~d---------gTvhIw~i~ 479 (627)
.+.+| |+|+||-+.
T Consensus 289 yA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 289 YACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred EEecCCCCccccccceeEEecCC
Confidence 87765 566666543
No 70
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.58 E-value=1.2e-12 Score=135.57 Aligned_cols=287 Identities=15% Similarity=0.175 Sum_probs=177.3
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 58 SHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 58 ~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
-.++||.|..+.|.- ++..+...+.++-++||++....+..++. +.+.=+.++.-. ...+
T Consensus 102 ltgHKDSVt~~~Fsh------dgtlLATGdmsG~v~v~~~stg~~~~~~~----~e~~dieWl~WH----------p~a~ 161 (399)
T KOG0296|consen 102 LTGHKDSVTCCSFSH------DGTLLATGDMSGKVLVFKVSTGGEQWKLD----QEVEDIEWLKWH----------PRAH 161 (399)
T ss_pred ecCCCCceEEEEEcc------CceEEEecCCCccEEEEEcccCceEEEee----cccCceEEEEec----------cccc
Confidence 456899999999963 22556667778889999999977655555 333333333211 0013
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecC--cEEEE
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSP--RIVAV 214 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~--~~LaV 214 (627)
+|+ .++ .++.|-.|.+-.+.+.+.+..+ +++.+=.|.| +++++
T Consensus 162 ill-AG~---------------------------------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 162 ILL-AGS---------------------------------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILT 207 (399)
T ss_pred EEE-eec---------------------------------CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEE
Confidence 433 221 1366999999998888888855 4888888876 67766
Q ss_pred Ee-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC-ceEEEcCC-CCCcCC----CCccCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP-RWLAYASN-NPLLPN----TGRLSPQSLTPP 287 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~-r~LAy~~~-~~~v~~----~gr~~~q~~t~~ 287 (627)
+. ++.|++||..|++.++.+.....-. ..+++++- -|+++..+ +..+.. .|.+ -..+.+
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~------------~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKV--v~~~n~ 273 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEGLE------------LPCISLNLAGSTLTKGNSEGVACGVNNGSGKV--VNCNNG 273 (399)
T ss_pred EecCceEEEEecCCCceeEEecccccCc------------CCccccccccceeEeccCCccEEEEccccceE--EEecCC
Confidence 64 6689999999999999987321100 11122211 12222221 111100 0100 000000
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeE
Q 046828 288 SVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMV 367 (627)
Q Consensus 288 ~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V 367 (627)
. .|.-.++.+..... + .+ ..|. ..++ ..+.+.-||+|
T Consensus 274 ~-~~~l~~~~e~~~es--------v-----------------------------e~---~~~s-s~lp-L~A~G~vdG~i 310 (399)
T KOG0296|consen 274 T-VPELKPSQEELDES--------V-----------------------------ES---IPSS-SKLP-LAACGSVDGTI 310 (399)
T ss_pred C-Cccccccchhhhhh--------h-----------------------------hh---cccc-cccc-hhhcccccceE
Confidence 0 00000000000000 0 00 0000 0111 11356789999
Q ss_pred EEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecC
Q 046828 368 VVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGM 447 (627)
Q Consensus 368 ~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~ 447 (627)
.|||+.+.+. .++-.|..+|..|.|-+ -.+|+||+.+|+ ||.||.+ +|. .++.+ +||
T Consensus 311 ~iyD~a~~~~-R~~c~he~~V~~l~w~~-t~~l~t~c~~g~-v~~wDaR-------tG~------------l~~~y-~GH 367 (399)
T KOG0296|consen 311 AIYDLAASTL-RHICEHEDGVTKLKWLN-TDYLLTACANGK-VRQWDAR-------TGQ------------LKFTY-TGH 367 (399)
T ss_pred EEEecccchh-heeccCCCceEEEEEcC-cchheeeccCce-EEeeecc-------ccc------------eEEEE-ecC
Confidence 9999998654 45556999999999999 788999999997 8999986 552 55555 798
Q ss_pred CcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 448 TSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 448 t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
+. .|++++.+||.++++++|.|+|.+||.+.
T Consensus 368 ~~-~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 368 QM-GILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ch-heeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 74 59999999999999999999999999874
No 71
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.58 E-value=1.5e-14 Score=148.47 Aligned_cols=178 Identities=16% Similarity=0.182 Sum_probs=129.2
Q ss_pred CcEEEEEECCCCceE---EEEe-cCCeEEEEEecCcEEEEEeCC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccc
Q 046828 179 PTAVRFYSLRSHNYV---HVLR-FRSTVYMVRCSPRIVAVGLAA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V---~tL~-f~s~V~sV~~s~~~LaV~~~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~ 253 (627)
+.++.+||+.+...+ +.|. ++..|..|.|..++|+++..+ +|++|++.|+|.+.++.+|..
T Consensus 296 DrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkR-------------- 361 (499)
T KOG0281|consen 296 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR-------------- 361 (499)
T ss_pred CceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccc--------------
Confidence 478999999877643 3343 567999999999999988655 799999999999999987743
Q ss_pred cceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecc
Q 046828 254 YGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQD 333 (627)
Q Consensus 254 ~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~ 333 (627)
-+|..... ||
T Consensus 362 ---------GIAClQYr------~r------------------------------------------------------- 371 (499)
T KOG0281|consen 362 ---------GIACLQYR------DR------------------------------------------------------- 371 (499)
T ss_pred ---------cceehhcc------Ce-------------------------------------------------------
Confidence 22222110 11
Q ss_pred ccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEE
Q 046828 334 FIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIF 413 (627)
Q Consensus 334 ~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vw 413 (627)
+. .+++.|.+|++||+..|.++..+++|..-|.|+.|+ .+.+++|.-||+ |+||
T Consensus 372 --------------------lv---VSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGk-ikvW 425 (499)
T KOG0281|consen 372 --------------------LV---VSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGK-IKVW 425 (499)
T ss_pred --------------------EE---EecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeeccccce-EEEE
Confidence 00 134678899999999999999999999999999996 689999999998 8999
Q ss_pred eCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 414 RIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 414 di~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
|+...... + . ++...++..+-+ +..+|..+-| |...++++|.|.||-||+...
T Consensus 426 dl~aaldp--r-------a-~~~~~Cl~~lv~--hsgRVFrLQF--D~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 426 DLQAALDP--R-------A-PASTLCLRTLVE--HSGRVFRLQF--DEFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred ecccccCC--c-------c-cccchHHHhhhh--ccceeEEEee--cceEEEeccCCCeEEEEEcCC
Confidence 98521100 0 0 011113333322 2346888887 556899999999999999864
No 72
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.57 E-value=1.8e-14 Score=150.57 Aligned_cols=228 Identities=15% Similarity=0.222 Sum_probs=170.8
Q ss_pred CeEEEEeccCc-EEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 81 KHVLLLGYSNG-FQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 81 ~~vl~~Gy~~G-~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
..-++.|..+| +++|+.+- .+|+.+...|+..||.+++.|+- . .. ++|.
T Consensus 150 g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnD-------s------kF--~t~S-------------- 199 (464)
T KOG0284|consen 150 GTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPND-------S------KF--LTCS-------------- 199 (464)
T ss_pred CCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCC-------c------ee--EEec--------------
Confidence 45566666555 99999886 45666666666889999998852 2 11 2221
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC-eEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEE
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVL 235 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~ 235 (627)
.+++|+|||.+-.++-..|..+. .|.+|++.| -+||++.++ .|++||.++++++-++.
T Consensus 200 ------------------dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh 261 (464)
T KOG0284|consen 200 ------------------DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH 261 (464)
T ss_pred ------------------CCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh
Confidence 14789999999888878888665 899999988 577888766 69999999999998888
Q ss_pred cCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhh
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLA 313 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~ 313 (627)
.|.+. +-.+.+.+ .||+.
T Consensus 262 ~HKnt-------------Vl~~~f~~n~N~Llt----------------------------------------------- 281 (464)
T KOG0284|consen 262 GHKNT-------------VLAVKFNPNGNWLLT----------------------------------------------- 281 (464)
T ss_pred hccce-------------EEEEEEcCCCCeeEE-----------------------------------------------
Confidence 87653 11122221 33333
Q ss_pred cceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEE
Q 046828 314 AGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCF 393 (627)
Q Consensus 314 ~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laF 393 (627)
++.|..++++|+.+.+.+..+++|...|.+++|
T Consensus 282 -----------------------------------------------~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~W 314 (464)
T KOG0284|consen 282 -----------------------------------------------GSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTW 314 (464)
T ss_pred -----------------------------------------------ccCCceEEEEehhHhHHHHHhhcchhhheeecc
Confidence 346778999999999999999999999999999
Q ss_pred CC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCe
Q 046828 394 DR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGT 472 (627)
Q Consensus 394 sp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgT 472 (627)
+| .-.+|.++..||. |..|.+... ..+...--+|.. .|++++|.|=|..||+++.|.|
T Consensus 315 hP~~~~lftsgg~Dgs-vvh~~v~~~-------------------~p~~~i~~AHd~-~iwsl~~hPlGhil~tgsnd~t 373 (464)
T KOG0284|consen 315 HPLNESLFTSGGSDGS-VVHWVVGLE-------------------EPLGEIPPAHDG-EIWSLAYHPLGHILATGSNDRT 373 (464)
T ss_pred ccccccceeeccCCCc-eEEEecccc-------------------ccccCCCccccc-ceeeeeccccceeEeecCCCcc
Confidence 99 5678899999998 688887411 122333334443 4999999999999999999999
Q ss_pred EEEEEcCCCCCe
Q 046828 473 CHIFVLTPFGGE 484 (627)
Q Consensus 473 vhIw~i~~~gg~ 484 (627)
++.|.-...+..
T Consensus 374 ~rfw~r~rp~d~ 385 (464)
T KOG0284|consen 374 VRFWTRNRPGDK 385 (464)
T ss_pred eeeeccCCCCCc
Confidence 999998765543
No 73
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.56 E-value=4.8e-13 Score=139.01 Aligned_cols=224 Identities=15% Similarity=0.166 Sum_probs=160.2
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeee---cCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeec
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSR---RDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHV 157 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~---~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~ 157 (627)
..++..|.|..+++|-++.+.++.+.+.. |.+.|-.|.+.+.. .. ++.
T Consensus 160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-------------tr--~~S-------------- 210 (423)
T KOG0313|consen 160 CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-------------TR--FCS-------------- 210 (423)
T ss_pred ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-------------Ce--EEe--------------
Confidence 57888999999999999998877776665 55666666665432 11 121
Q ss_pred cCcccccCCCCCCCCCCCCcCCcEEEEEEC-------------------------CCCceEEEEe-cCCeEEEEEecC-c
Q 046828 158 GRDGLVRDGYDEPQPGNVAMSPTAVRFYSL-------------------------RSHNYVHVLR-FRSTVYMVRCSP-R 210 (627)
Q Consensus 158 ~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl-------------------------~t~~~V~tL~-f~s~V~sV~~s~-~ 210 (627)
|+|| ++|+||+. .++.++-+|. +..+|-+|.+.. .
T Consensus 211 --------gS~D----------~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~ 272 (423)
T KOG0313|consen 211 --------GSWD----------TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDAT 272 (423)
T ss_pred --------eccc----------ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCC
Confidence 3343 77888881 2344667777 456999999987 3
Q ss_pred -EEEEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCC
Q 046828 211 -IVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPP 287 (627)
Q Consensus 211 -~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~ 287 (627)
++.++.+-+|+.||+.++.+.-++.+.-. ...++.+| ++||.
T Consensus 273 v~yS~SwDHTIk~WDletg~~~~~~~~~ks--------------l~~i~~~~~~~Ll~~--------------------- 317 (423)
T KOG0313|consen 273 VIYSVSWDHTIKVWDLETGGLKSTLTTNKS--------------LNCISYSPLSKLLAS--------------------- 317 (423)
T ss_pred ceEeecccceEEEEEeecccceeeeecCcc--------------eeEeecccccceeee---------------------
Confidence 34455677999999999998888766311 22233322 22332
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeE
Q 046828 288 SVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMV 367 (627)
Q Consensus 288 ~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V 367 (627)
++.|-.+
T Consensus 318 -------------------------------------------------------------------------gssdr~i 324 (423)
T KOG0313|consen 318 -------------------------------------------------------------------------GSSDRHI 324 (423)
T ss_pred -------------------------------------------------------------------------cCCCCce
Confidence 3456678
Q ss_pred EEEECCCCe---EEEEeccCCCCeEEEEECCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 368 VVKDIVSRS---VISQFRAHTSPISALCFDRSGT-LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 368 ~IwD~~s~~---~l~~~~aH~~~Is~laFspdG~-lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
++||.+++. +..+|.+|..-|+++.++|... +|+++|.|++ +++||+. .. . ..+|.+
T Consensus 325 rl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-~klWDvR-S~----k-------------~plydI 385 (423)
T KOG0313|consen 325 RLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-VKLWDVR-ST----K-------------APLYDI 385 (423)
T ss_pred eecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe-EEEEEec-cC----C-------------Ccceee
Confidence 888887652 5668899999999999999765 6899999998 7999996 22 1 168888
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+ | ..+|.++.|+. +..|++|+.|.+++||.-.+.
T Consensus 386 ~~-h-~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~~~ 420 (423)
T KOG0313|consen 386 AG-H-NDKVLSVDWNE-GGLIVSGGADNKLRIFKGSPI 420 (423)
T ss_pred cc-C-CceEEEEeccC-CceEEeccCcceEEEeccccc
Confidence 54 4 45799999964 568999999999999986653
No 74
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.54 E-value=8.9e-12 Score=127.39 Aligned_cols=177 Identities=15% Similarity=0.191 Sum_probs=117.8
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCC--eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAA--QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYG 255 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~--~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~ 255 (627)
++|++||+++++.+..++....+.++.+++ ++++++..+ .+++||..+++....+.....
T Consensus 95 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------------- 158 (300)
T TIGR03866 95 NLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQR---------------- 158 (300)
T ss_pred CeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCC----------------
Confidence 679999999999998888766778899986 677776543 578899988876544321111
Q ss_pred eeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecccc
Q 046828 256 PMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFI 335 (627)
Q Consensus 256 ~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~ 335 (627)
++.+++.++... + +
T Consensus 159 -----~~~~~~s~dg~~---------------------------------------l--------------~-------- 172 (300)
T TIGR03866 159 -----PRFAEFTADGKE---------------------------------------L--------------W-------- 172 (300)
T ss_pred -----ccEEEECCCCCE---------------------------------------E--------------E--------
Confidence 123344332100 0 0
Q ss_pred CCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCC-----C--CeEEEEECCCCCEEEEEe-CCC
Q 046828 336 PDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHT-----S--PISALCFDRSGTLLVTAS-IHG 407 (627)
Q Consensus 336 p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~-----~--~Is~laFspdG~lLaTaS-~dG 407 (627)
..+..+|.|.+||+.+++.+..+..+. . ....++|+|+|++++.+. .++
T Consensus 173 -----------------------~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 173 -----------------------VSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred -----------------------EEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC
Confidence 012357889999999998777665332 1 134688999999865543 344
Q ss_pred CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCCCCe
Q 046828 408 NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPFGGE 484 (627)
Q Consensus 408 t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~gg~ 484 (627)
+ |.|||+. ++. .+..+..+ ..+.+++|+||+++|++++ .+|+|+||++......
T Consensus 230 ~-i~v~d~~-------~~~------------~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 230 R-VAVVDAK-------TYE------------VLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred e-EEEEECC-------CCc------------EEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 4 8999985 221 22223223 2488999999999999874 6899999999875433
No 75
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.6e-13 Score=136.30 Aligned_cols=247 Identities=13% Similarity=0.154 Sum_probs=165.5
Q ss_pred CCCCcEEEEEeeccCC------CCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcC
Q 046828 60 ELKDQVLWSSFDKLEL------SPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFR 133 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~------~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~ 133 (627)
+.+--.....||..|. ....-..+++..-|+.+|+||+.........+..|...|..+...+.
T Consensus 47 ~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~----------- 115 (311)
T KOG0277|consen 47 DPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV----------- 115 (311)
T ss_pred CCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc-----------
Confidence 4444445666665321 11222556666668889999988877666666777776655554332
Q ss_pred CCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC---
Q 046828 134 NSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--- 209 (627)
Q Consensus 134 ~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--- 209 (627)
|.-..++ ++|| ++|+|||...++-|+|+. +++.||...++|
T Consensus 116 --~r~~~lt-----------------------sSWD----------~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~ 160 (311)
T KOG0277|consen 116 --RRRIFLT-----------------------SSWD----------GTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIP 160 (311)
T ss_pred --cceeEEe-----------------------eccC----------CceEeecCCCCcceEeecCCccEEEEEecCCCCC
Confidence 1112221 2354 889999999999999988 456999999997
Q ss_pred cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCC
Q 046828 210 RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPS 288 (627)
Q Consensus 210 ~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~ 288 (627)
.+++++. ++...+||++..-....|+-|... ++...|--|-.+
T Consensus 161 nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~E-----------------il~cdw~ky~~~------------------- 204 (311)
T KOG0277|consen 161 NLFASASGDGTLRLWDVRSPGKFMSIEAHNSE-----------------ILCCDWSKYNHN------------------- 204 (311)
T ss_pred CeEEEccCCceEEEEEecCCCceeEEEeccce-----------------eEeecccccCCc-------------------
Confidence 6777765 567999998754333335444211 111122111110
Q ss_pred CCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEE
Q 046828 289 VSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVV 368 (627)
Q Consensus 289 ~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~ 368 (627)
.+ +.++.|+.|+
T Consensus 205 ----------------------------------------------------------------vl----~Tg~vd~~vr 216 (311)
T KOG0277|consen 205 ----------------------------------------------------------------VL----ATGGVDNLVR 216 (311)
T ss_pred ----------------------------------------------------------------EE----EecCCCceEE
Confidence 00 1356799999
Q ss_pred EEECCCCe-EEEEeccCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeec
Q 046828 369 VKDIVSRS-VISQFRAHTSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRG 446 (627)
Q Consensus 369 IwD~~s~~-~l~~~~aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG 446 (627)
+||+.+.+ ++..+.+|.-.|..|+|||. -.+||+||-|=| +||||.+... +. ...++ -
T Consensus 217 ~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~d-----s~-----------~e~~~---~ 276 (311)
T KOG0277|consen 217 GWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQD-----SA-----------IETVD---H 276 (311)
T ss_pred EEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EEecccccch-----hh-----------hhhhh---c
Confidence 99999874 68889999999999999996 568999999988 7999976211 10 11222 1
Q ss_pred CCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEE
Q 046828 447 MTSAVIQDICFSH-YSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 447 ~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~ 477 (627)
|+. =|..+.||+ +..++|+++-|+++.||+
T Consensus 277 HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 277 HTE-FVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cce-EEeccccccccCceeeecccccceeeec
Confidence 221 278899998 888999999999999997
No 76
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.54 E-value=1.9e-13 Score=143.78 Aligned_cols=215 Identities=19% Similarity=0.273 Sum_probs=147.2
Q ss_pred cEEEEEECCCCceEEEEecCC-eEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYG 255 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~ 255 (627)
.++.++|-.+++.+.+++.+. .|.+|.+++ +.++++..+ .|+||.+.+-.+...+..|..| +.
T Consensus 241 ~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~-------------V~ 307 (506)
T KOG0289|consen 241 KTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEP-------------VT 307 (506)
T ss_pred CceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccccccc-------------ce
Confidence 678999999999999999877 999999998 555566544 6999998877666556555544 22
Q ss_pred eeeEc--CceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecc
Q 046828 256 PMAVG--PRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQD 333 (627)
Q Consensus 256 ~iAl~--~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~ 333 (627)
-+.+. +.||-.++++....+... +.|+......-+ -.+..|... .
T Consensus 308 ~ls~h~tgeYllsAs~d~~w~Fsd~-----------------~~g~~lt~vs~~-----------~s~v~~ts~-----~ 354 (506)
T KOG0289|consen 308 GLSLHPTGEYLLSASNDGTWAFSDI-----------------SSGSQLTVVSDE-----------TSDVEYTSA-----A 354 (506)
T ss_pred eeeeccCCcEEEEecCCceEEEEEc-----------------cCCcEEEEEeec-----------cccceeEEe-----e
Confidence 23333 367777776654221100 011111000000 011222221 1
Q ss_pred ccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEE
Q 046828 334 FIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIF 413 (627)
Q Consensus 334 ~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vw 413 (627)
.+|||. .| ..+..||.|+|||+.+...++.|.+|++||.+|+|+.+|-+|||+.+||. |++|
T Consensus 355 fHpDgL-------------if----gtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lw 416 (506)
T KOG0289|consen 355 FHPDGL-------------IF----GTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLW 416 (506)
T ss_pred EcCCce-------------EE----eccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEE
Confidence 234441 12 24678999999999999999999999999999999999999999999997 8999
Q ss_pred eCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 414 RIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 414 di~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
|++... ..+.+.+..+ -.|.+++|.+.|++|++++.|=+|++++-
T Consensus 417 DLRKl~-----------------n~kt~~l~~~---~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 417 DLRKLK-----------------NFKTIQLDEK---KEVNSLSFDQSGTYLGIAGSDLQVYICKK 461 (506)
T ss_pred Eehhhc-----------------ccceeecccc---ccceeEEEcCCCCeEEeecceeEEEEEec
Confidence 996221 0133444322 24899999999999999988888888874
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.53 E-value=1.3e-12 Score=150.27 Aligned_cols=294 Identities=16% Similarity=0.213 Sum_probs=178.4
Q ss_pred CCCeEEEEe--ccCcEEEEecCCCC----CceE----E---eeecCCceEEEEEeeCCCC-CCCCCCcCCCCCEEEEEEc
Q 046828 79 SFKHVLLLG--YSNGFQVLDVEDAT----NVSE----L---VSRRDDPVTFLQMQPLPAK-SDGQEGFRNSHPLLLVVAC 144 (627)
Q Consensus 79 ~~~~vl~~G--y~~G~qVWdv~~~~----~~~e----l---ls~~dG~V~~v~~lp~p~~-~~~~D~f~~~rpLlavv~~ 144 (627)
++.++..+| +|+|..||+.+.-. +..| . +..|+|.|.|+++.|+-.. +.+.|. -++ ..|
T Consensus 24 dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD-----~~v--~iW 96 (942)
T KOG0973|consen 24 DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD-----RLV--MIW 96 (942)
T ss_pred CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc-----ceE--EEe
Confidence 457888899 99999999987532 1122 1 2457899999999876532 111111 111 113
Q ss_pred cCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEE-eCCeE
Q 046828 145 DEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVG-LAAQI 220 (627)
Q Consensus 145 d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~-~~~~I 220 (627)
+... .|. ...+|.... -.-| +.=+.+..|. +.+.|.+|.+++ .+||++ .+++|
T Consensus 97 ~~~~-~~~---------~~~fgs~g~--------~~~v-----E~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsV 153 (942)
T KOG0973|consen 97 ERAE-IGS---------GTVFGSTGG--------AKNV-----ESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSV 153 (942)
T ss_pred eecc-cCC---------ccccccccc--------cccc-----ceeeEEEEEecCCCccceeccCCCccEEEEecccceE
Confidence 3321 010 001111000 0111 1223566776 556999999997 677765 67799
Q ss_pred EEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCC
Q 046828 221 YCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNG 298 (627)
Q Consensus 221 ~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~g 298 (627)
.|||+.|++++.++.+|... +.-++++| +++|.-+++.++.+|-....+
T Consensus 154 iiwn~~tF~~~~vl~~H~s~-------------VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~---------------- 204 (942)
T KOG0973|consen 154 IIWNAKTFELLKVLRGHQSL-------------VKGVSWDPIGKYFASQSDDRTLKVWRTSDWG---------------- 204 (942)
T ss_pred EEEccccceeeeeeeccccc-------------ccceEECCccCeeeeecCCceEEEEEcccce----------------
Confidence 99999999999999998643 22366766 999999998887765322100
Q ss_pred cccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCcccc-Ccc-c-ccccCCCCCCeEEEEECCCC
Q 046828 299 NLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKA-GRN-A-SHSSDTDIAGMVVVKDIVSR 375 (627)
Q Consensus 299 s~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~-g~~-~-~~~~~~~~dG~V~IwD~~s~ 375 (627)
..|.+.+- +.+.. .+-|| ...+|.+ |.+ + .|. --+..-.+.|.+-.+-
T Consensus 205 ---------i~k~It~p---f~~~~---~~T~f-------------~RlSWSPDG~~las~nA-~n~~~~~~~IieR~tW 255 (942)
T KOG0973|consen 205 ---------IEKSITKP---FEESP---LTTFF-------------LRLSWSPDGHHLASPNA-VNGGKSTIAIIERGTW 255 (942)
T ss_pred ---------eeEeeccc---hhhCC---Cccee-------------eecccCCCcCeecchhh-ccCCcceeEEEecCCc
Confidence 00111000 00000 00111 1122322 211 1 111 0122346788888888
Q ss_pred eEEEEeccCCCCeEEEEECCC-------------CC----EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 376 SVISQFRAHTSPISALCFDRS-------------GT----LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspd-------------G~----lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
+.-..|-+|..|+.+++|+|. +. .+|+||.|++ |-||... . - +
T Consensus 256 k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrS-lSVW~T~-~------~------------R 315 (942)
T KOG0973|consen 256 KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRS-LSVWNTA-L------P------------R 315 (942)
T ss_pred eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCcc-EEEEecC-C------C------------C
Confidence 888899999999999999985 22 6899999998 7999864 1 1 1
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+.-.+. .....|.|++|||||.-|.++|.||||.++..++.
T Consensus 316 Pl~vi~~-lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 316 PLFVIHN-LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred chhhhhh-hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 2221111 12345999999999999999999999999998764
No 78
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.53 E-value=1e-12 Score=139.16 Aligned_cols=112 Identities=16% Similarity=0.302 Sum_probs=84.9
Q ss_pred CCCCCCeEEEEECCCC-eEEEEeccCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCC-CCc
Q 046828 360 DTDIAGMVVVKDIVSR-SVISQFRAHTSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDW-TSS 436 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~-~~~ 436 (627)
.++.|++|.+||+++. +++..|..|...|..|.|||. -+.||+++.||+ ++|||+...+.. ....+. .+.
T Consensus 290 T~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~ig~e------q~~eda~dgp 362 (422)
T KOG0264|consen 290 TGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRIGEE------QSPEDAEDGP 362 (422)
T ss_pred eccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEeccccccc------cChhhhccCC
Confidence 3467899999999987 468999999999999999996 678999999998 699999633211 000111 122
Q ss_pred eeEEEEEeecCCcCcEEEEEEccCCCEE-EEEeCCCeEEEEEcCC
Q 046828 437 HVHLYKLHRGMTSAVIQDICFSHYSQWI-AIVSSRGTCHIFVLTP 480 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFSpDg~~L-as~S~dgTvhIw~i~~ 480 (627)
...++ .+.||+ ++|.+++|+|..-|+ |++++|+.+|||....
T Consensus 363 pEllF-~HgGH~-~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 363 PELLF-IHGGHT-AKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cceeE-EecCcc-cccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 22333 458987 579999999987765 5788999999999863
No 79
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.52 E-value=1.3e-13 Score=146.89 Aligned_cols=232 Identities=15% Similarity=0.231 Sum_probs=154.0
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCce-EEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPV-TFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V-~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.|...|-.++|.++ +.++|..|||..+++||++++. .+...+.+-+ .|+++.|.. +-
T Consensus 256 gH~k~Vrd~~~s~~------g~~fLS~sfD~~lKlwDtETG~---~~~~f~~~~~~~cvkf~pd~-------------~n 313 (503)
T KOG0282|consen 256 GHRKPVRDASFNNC------GTSFLSASFDRFLKLWDTETGQ---VLSRFHLDKVPTCVKFHPDN-------------QN 313 (503)
T ss_pred cchhhhhhhhcccc------CCeeeeeecceeeeeeccccce---EEEEEecCCCceeeecCCCC-------------Cc
Confidence 35666777777664 3789999999999999999855 4555555544 888887764 22
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecC---cEEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSP---RIVAV 214 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~---~~LaV 214 (627)
+.+|+ | ++.+|+.||+|+++.|+++..+ ..|.+|.|-+ ++|.+
T Consensus 314 ~fl~G-------~--------------------------sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 314 IFLVG-------G--------------------------SDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred EEEEe-------c--------------------------CCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 34443 1 2478999999999999998754 5888888854 55555
Q ss_pred EeCCeEEEEeCCCCceeEEEEc---CCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCC
Q 046828 215 GLAAQIYCFDALTLESKFSVLT---YPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSV 289 (627)
Q Consensus 215 ~~~~~I~i~D~~t~e~~~tl~~---~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~ 289 (627)
+.+..+.||+....-.+.-+.. |..| .+++.| .|+|--
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP---------------~~~~~P~~~~~~aQ---------------------- 403 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMP---------------CLTLHPNGKWFAAQ---------------------- 403 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCc---------------ceecCCCCCeehhh----------------------
Confidence 5666899999877544322221 2222 233322 222211
Q ss_pred CCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE
Q 046828 290 SPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV 369 (627)
Q Consensus 290 s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I 369 (627)
+.+..|.|
T Consensus 404 ------------------------------------------------------------------------s~dN~i~i 411 (503)
T KOG0282|consen 404 ------------------------------------------------------------------------SMDNYIAI 411 (503)
T ss_pred ------------------------------------------------------------------------ccCceEEE
Confidence 12223333
Q ss_pred EECCCC---eEEEEeccCCCC--eEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q 046828 370 KDIVSR---SVISQFRAHTSP--ISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH 444 (627)
Q Consensus 370 wD~~s~---~~l~~~~aH~~~--Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~ 444 (627)
+.+... ..-..|++|..+ -..+.|||||.+|++|+.+|. +.+||..+. +++...
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~-v~~wdwkt~--------------------kl~~~l 470 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK-VNFWDWKTT--------------------KLVSKL 470 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc-EEEeechhh--------------------hhhhcc
Confidence 332221 123467777533 345799999999999999998 799998632 333333
Q ss_pred ecCCcCcEEEEEEccC-CCEEEEEeCCCeEEEEE
Q 046828 445 RGMTSAVIQDICFSHY-SQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 445 rG~t~a~I~sIaFSpD-g~~Las~S~dgTvhIw~ 477 (627)
..++ ..+..+.|.|- ...||+++-+|-|+||+
T Consensus 471 kah~-~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 471 KAHD-QPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ccCC-cceEEEEecCCCcceeEecccCceeEecC
Confidence 4453 35899999994 45788999999999995
No 80
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.9e-12 Score=142.06 Aligned_cols=246 Identities=19% Similarity=0.198 Sum_probs=186.0
Q ss_pred CCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
...+|.+|....+.+|+-.. +.+.+|....+..|+.+.+.+.- ..|||-.
T Consensus 187 s~n~laValg~~vylW~~~s-~~v~~l~~~~~~~vtSv~ws~~G-------------~~LavG~---------------- 236 (484)
T KOG0305|consen 187 SANVLAVALGQSVYLWSASS-GSVTELCSFGEELVTSVKWSPDG-------------SHLAVGT---------------- 236 (484)
T ss_pred cCCeEEEEecceEEEEecCC-CceEEeEecCCCceEEEEECCCC-------------CEEEEee----------------
Confidence 47799999999999999987 45788888777888888877643 4566522
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec--CCeEEEEEecCcEEEEEe-CCeEEEEeCCCCceeEE-EE
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF--RSTVYMVRCSPRIVAVGL-AAQIYCFDALTLESKFS-VL 235 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f--~s~V~sV~~s~~~LaV~~-~~~I~i~D~~t~e~~~t-l~ 235 (627)
..++|.|||.++.+.+.++.. ...|-+++++..+|.+|. ++.|..||++..+.... +.
T Consensus 237 ------------------~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~ 298 (484)
T KOG0305|consen 237 ------------------SDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQ 298 (484)
T ss_pred ------------------cCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhh
Confidence 236799999999999999987 459999999998888875 56899999998775544 33
Q ss_pred cCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcc
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAG 315 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~g 315 (627)
+|... .|| |+++.+..
T Consensus 299 ~H~qe------VCg--------------Lkws~d~~-------------------------------------------- 314 (484)
T KOG0305|consen 299 GHRQE------VCG--------------LKWSPDGN-------------------------------------------- 314 (484)
T ss_pred cccce------eee--------------eEECCCCC--------------------------------------------
Confidence 44321 111 33333210
Q ss_pred eeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECC
Q 046828 316 LINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDR 395 (627)
Q Consensus 316 l~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFsp 395 (627)
..++++.|..|.|||....+++..|..|...|-+++|+|
T Consensus 315 -----------------------------------------~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP 353 (484)
T KOG0305|consen 315 -----------------------------------------QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCP 353 (484)
T ss_pred -----------------------------------------eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCC
Confidence 012467899999999988899999999999999999999
Q ss_pred -CCCEEEEE--eCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE--EeCC
Q 046828 396 -SGTLLVTA--SIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI--VSSR 470 (627)
Q Consensus 396 -dG~lLaTa--S~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las--~S~d 470 (627)
...+||+| +.|++ |++||+. +|. ++..+. +...|.+|.||+..+-|++ |-.+
T Consensus 354 ~q~~lLAsGGGs~D~~-i~fwn~~-------~g~------------~i~~vd---tgsQVcsL~Wsk~~kEi~sthG~s~ 410 (484)
T KOG0305|consen 354 WQSGLLATGGGSADRC-IKFWNTN-------TGA------------RIDSVD---TGSQVCSLIWSKKYKELLSTHGYSE 410 (484)
T ss_pred CccCceEEcCCCcccE-EEEEEcC-------CCc------------Eecccc---cCCceeeEEEcCCCCEEEEecCCCC
Confidence 67799996 45776 8999986 342 444443 4567999999999977776 4456
Q ss_pred CeEEEEEcCCCCCeeecccccccccCCCCCC
Q 046828 471 GTCHIFVLTPFGGETVLQIQNSHVDRPTLSP 501 (627)
Q Consensus 471 gTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p 501 (627)
+-|.||+.........+..|+..|.--.+.|
T Consensus 411 n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP 441 (484)
T KOG0305|consen 411 NQITLWKYPSMKLVAELLGHTSRVLYLALSP 441 (484)
T ss_pred CcEEEEeccccceeeeecCCcceeEEEEECC
Confidence 7899999999888888999988765433344
No 81
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.51 E-value=1e-13 Score=141.14 Aligned_cols=182 Identities=21% Similarity=0.284 Sum_probs=129.3
Q ss_pred CCCCCCeEEEEECCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
++..||.|+||.+.++.++..|. +|+..|.||.|+.|+..+.++|.|-+ +||--++ +|.
T Consensus 280 sGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~t-vRiHGlK-------SGK------------ 339 (508)
T KOG0275|consen 280 SGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQT-VRIHGLK-------SGK------------ 339 (508)
T ss_pred ccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccce-EEEeccc-------cch------------
Confidence 46789999999999999999998 99999999999999999999999976 7998776 452
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCCC---ccCCCCCCCcccc
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPV---LSVPWWSSPSFMI 515 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~---~~~~~~~~~~~s~ 515 (627)
.+.++ |||+. -|+...|++||..++++|.||||+||+........+++... +-.|+ ..+|+
T Consensus 340 ~LKEf-rGHsS-yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~------~d~~vnsv~~~PK-------- 403 (508)
T KOG0275|consen 340 CLKEF-RGHSS-YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG------TDYPVNSVILLPK-------- 403 (508)
T ss_pred hHHHh-cCccc-cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC------CcccceeEEEcCC--------
Confidence 45555 89875 49999999999999999999999999998765544332211 11111 12221
Q ss_pred ccCCCCCCCCCCeeeeeeeeeecCCCCccccccccccccCCccCCCccceeeecccccccCCCcccc-cccCcceEEEEc
Q 046828 516 NQPSFSLPPPLPVTLSVVSRIKNNNSGWLNTVSSTASSTAGKTSIPSGALAAVFHSSLHQDLQPLDS-KVNDLEHVLVYT 594 (627)
Q Consensus 516 ~q~~~~~~~p~~~~l~~~~~i~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~-~~~~~~~l~v~~ 594 (627)
.|++-+. .|- .++|--+ -.+|||.-.|..++..+...++. -.++-|-.|-+.
T Consensus 404 -------npeh~iV---------CNr--sntv~im---------n~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig 456 (508)
T KOG0275|consen 404 -------NPEHFIV---------CNR--SNTVYIM---------NMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG 456 (508)
T ss_pred -------CCceEEE---------EcC--CCeEEEE---------eccceEEeeeccCCccCCceEEEEecCCCcEEEEEc
Confidence 1111110 010 0111111 12378888888877665555543 347778889999
Q ss_pred CCCcEEEEEe
Q 046828 595 PSGHVVQYKL 604 (627)
Q Consensus 595 ~~G~l~~y~l 604 (627)
.||-||.+..
T Consensus 457 ED~vlYCF~~ 466 (508)
T KOG0275|consen 457 EDGVLYCFSV 466 (508)
T ss_pred cCcEEEEEEe
Confidence 9999998875
No 82
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.50 E-value=6.4e-12 Score=140.98 Aligned_cols=98 Identities=21% Similarity=0.335 Sum_probs=82.2
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
.+..+-.|+|+|..+.+.+..|.+|...|++++|||||+.|++|+.|++ ||+||+ |. | +
T Consensus 551 ~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir~wDl-pt------~-------------~ 609 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IRTWDL-PT------G-------------T 609 (910)
T ss_pred hhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EEEEec-cC------c-------------c
Confidence 3456788999999999999999999999999999999999999999998 899999 43 3 3
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCC-CeEEEEEcCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSR-GTCHIFVLTP 480 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d-gTvhIw~i~~ 480 (627)
+..... ......++.|||+|.+||++..| .-|.+|.-..
T Consensus 610 lID~~~--vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 610 LIDGLL--VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred eeeeEe--cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 333322 23457999999999999999988 6799997543
No 83
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.49 E-value=3.7e-12 Score=127.48 Aligned_cols=184 Identities=15% Similarity=0.141 Sum_probs=137.8
Q ss_pred cEEEEEECCCCceEEEEecC-CeEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEEcCC-CCCCCCCCCcCccccc
Q 046828 180 TAVRFYSLRSHNYVHVLRFR-STVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVLTYP-VPHFGGQGTSGVNIGY 254 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~~~p-~~~~~~~g~~~~~~~~ 254 (627)
.++.+|-...|+.+.++..+ ..|+++++.. +.|+.+.++ .+++||..+++.+.++.... .. .
T Consensus 32 ~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk-------------~ 98 (327)
T KOG0643|consen 32 STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVK-------------R 98 (327)
T ss_pred CCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeE-------------E
Confidence 44778988899999999955 5999988875 778887766 69999999999999987631 11 1
Q ss_pred ceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccc
Q 046828 255 GPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDF 334 (627)
Q Consensus 255 ~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~ 334 (627)
--|.++...+.+..++
T Consensus 99 ~~F~~~gn~~l~~tD~---------------------------------------------------------------- 114 (327)
T KOG0643|consen 99 VDFSFGGNLILASTDK---------------------------------------------------------------- 114 (327)
T ss_pred EeeccCCcEEEEEehh----------------------------------------------------------------
Confidence 1244444444444321
Q ss_pred cCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC-------CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 046828 335 IPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV-------SRSVISQFRAHTSPISALCFDRSGTLLVTASIHG 407 (627)
Q Consensus 335 ~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~-------s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG 407 (627)
..++.+.|.++|+. +.+++..+..+.+.|...-|+|-|+.|+++.++|
T Consensus 115 -------------------------~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G 169 (327)
T KOG0643|consen 115 -------------------------QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDG 169 (327)
T ss_pred -------------------------hcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCC
Confidence 01244566777766 4567888888899999999999999999999999
Q ss_pred CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeee
Q 046828 408 NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETV 486 (627)
Q Consensus 408 t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~ 486 (627)
. |++||+. +|. .+.+-.+-|. ..|.+|.||+|..+++++|.|.|.++||+....-+.+
T Consensus 170 ~-is~~da~-------~g~------------~~v~s~~~h~-~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt 227 (327)
T KOG0643|consen 170 S-ISIYDAR-------TGK------------ELVDSDEEHS-SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT 227 (327)
T ss_pred c-EEEEEcc-------cCc------------eeeechhhhc-cccccccccCCcceEEecccCccceeeeccceeeEEE
Confidence 8 8999996 342 3333333343 4699999999999999999999999999987655443
No 84
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.49 E-value=9.7e-13 Score=144.89 Aligned_cols=213 Identities=18% Similarity=0.268 Sum_probs=146.1
Q ss_pred cEEEEEECCCCceEEEEe-cCCeEEEEEecC-----cEEEEEeCCe-EEEEeCC-CCceeEEEEcCCCCCCCCCCCcCcc
Q 046828 180 TAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP-----RIVAVGLAAQ-IYCFDAL-TLESKFSVLTYPVPHFGGQGTSGVN 251 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~-----~~LaV~~~~~-I~i~D~~-t~e~~~tl~~~p~~~~~~~g~~~~~ 251 (627)
+++++|||..-++...++ +.++|.++.++. ++||++..++ |||||+. ....++++.+|.... .
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI------T--- 551 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI------T--- 551 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce------e---
Confidence 679999999999998888 678999999984 7889988775 9999975 455677888875430 0
Q ss_pred cccceeeEcC---ceEEEcCCCCCcCC---C----CccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCC
Q 046828 252 IGYGPMAVGP---RWLAYASNNPLLPN---T----GRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGD 321 (627)
Q Consensus 252 ~~~~~iAl~~---r~LAy~~~~~~v~~---~----gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~ 321 (627)
.--|+..+ +.|..+.+. .+-+ + |++.+ ..+..+.+ ..+.|
T Consensus 552 --svKFa~~gln~~MiscGADk-simFr~~qk~~~g~~f~-------------------------r~t~t~~k--tTlYD 601 (1080)
T KOG1408|consen 552 --SVKFACNGLNRKMISCGADK-SIMFRVNQKASSGRLFP-------------------------RHTQTLSK--TTLYD 601 (1080)
T ss_pred --EEEEeecCCceEEEeccCch-hhheehhccccCceecc-------------------------cccccccc--ceEEE
Confidence 11133332 445544433 2111 0 11100 00111111 11222
Q ss_pred cceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEecc---CCCCeEEEEECCCCC
Q 046828 322 MGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRA---HTSPISALCFDRSGT 398 (627)
Q Consensus 322 ~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~a---H~~~Is~laFspdG~ 398 (627)
|.. ++.|+. ...+.+|..|+|||+++++++..|++ |.+..-.|..+|+|-
T Consensus 602 m~V---------------------dp~~k~------v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi 654 (1080)
T KOG1408|consen 602 MAV---------------------DPTSKL------VVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI 654 (1080)
T ss_pred eee---------------------CCCcce------EEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCcc
Confidence 221 112221 12457899999999999999999985 556688899999999
Q ss_pred EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 399 LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 399 lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
+|||...|.+ +-+||.- +|. ++.+. .||..+ |+.+.|++|.+.|++++.||.|.||.+
T Consensus 655 Y~atScsdkt-l~~~Df~-------sgE------------cvA~m-~GHsE~-VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 655 YLATSCSDKT-LCFVDFV-------SGE------------CVAQM-TGHSEA-VTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred EEEEeecCCc-eEEEEec-------cch------------hhhhh-cCcchh-eeeeeecccchhheeecCCceEEEEEC
Confidence 9999999987 7999985 342 33333 577654 999999999999999999999999998
Q ss_pred CC
Q 046828 479 TP 480 (627)
Q Consensus 479 ~~ 480 (627)
..
T Consensus 713 p~ 714 (1080)
T KOG1408|consen 713 PL 714 (1080)
T ss_pred ch
Confidence 65
No 85
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.7e-11 Score=124.73 Aligned_cols=115 Identities=13% Similarity=0.146 Sum_probs=77.6
Q ss_pred CCeEEEEECCCC----eEEEEeccCCCCeEEEEECCC----CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 364 AGMVVVKDIVSR----SVISQFRAHTSPISALCFDRS----GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 364 dG~V~IwD~~s~----~~l~~~~aH~~~Is~laFspd----G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
-+.+.||..... ..+..+..|+.||..|+|.|+ -.+||+|+.|| |+||.+.+....-.......+.....
T Consensus 198 ~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~ 275 (361)
T KOG2445|consen 198 LNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTD 275 (361)
T ss_pred ccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc--EEEEEEeeccchhhhhcccCCCCccc
Confidence 346677765433 357778899999999999997 35899999999 79999974210000000000111111
Q ss_pred ceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 436 SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 436 ~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
...++.....+| +..|+.+.|+--|..|+++++||+|++|..+-.
T Consensus 276 l~v~~vs~~~~H-~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 276 LPVEKVSELDDH-NGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred cceEEeeeccCC-CCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 223334333454 457999999999999999999999999987643
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.48 E-value=3.8e-13 Score=140.96 Aligned_cols=224 Identities=17% Similarity=0.187 Sum_probs=155.9
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeec---CCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeec
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRR---DDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHV 157 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~---dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~ 157 (627)
..+...|.|.-+++|++...+ .|+.+.. .|++.-+.+.+.- +-.|| .
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k--~~~~~tLaGs~g~it~~d~d~~~------------~~~iA--a-------------- 237 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEK--SELISTLAGSLGNITSIDFDSDN------------KHVIA--A-------------- 237 (459)
T ss_pred chhhhcchhhhhhhhhcccch--hhhhhhhhccCCCcceeeecCCC------------ceEEe--e--------------
Confidence 578889999999999999766 5555544 3445444443211 11222 1
Q ss_pred cCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC-eEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEE
Q 046828 158 GRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFS 233 (627)
Q Consensus 158 ~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~t 233 (627)
..++.+++|++...+..++|..++ .|.++.|.. ..++.+..+ +|++||+....+..+
T Consensus 238 -------------------s~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 238 -------------------SNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred -------------------cCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecc
Confidence 124679999999999999999655 999999975 225555544 799999998666544
Q ss_pred EEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhh
Q 046828 234 VLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLA 313 (627)
Q Consensus 234 l~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~ 313 (627)
+. | +.+ .+.|.++ ..
T Consensus 299 ~l----~--------~S~--cnDI~~~-------~~-------------------------------------------- 313 (459)
T KOG0288|consen 299 VL----P--------GSQ--CNDIVCS-------IS-------------------------------------------- 313 (459)
T ss_pred cc----c--------ccc--ccceEec-------ce--------------------------------------------
Confidence 32 1 000 1112211 00
Q ss_pred cceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEE
Q 046828 314 AGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCF 393 (627)
Q Consensus 314 ~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laF 393 (627)
.+ .++..|+.|+.||+.+...+.....|. .|++|..
T Consensus 314 ------------~~-------------------------------~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~l 349 (459)
T KOG0288|consen 314 ------------DV-------------------------------ISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDL 349 (459)
T ss_pred ------------ee-------------------------------eecccccceEEEeccCCceeeEeecCc-ceeeEee
Confidence 00 124578899999999999998888876 8999999
Q ss_pred CCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecC-CcCcEEEEEEccCCCEEEEEeCCCe
Q 046828 394 DRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGM-TSAVIQDICFSHYSQWIAIVSSRGT 472 (627)
Q Consensus 394 spdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~-t~a~I~sIaFSpDg~~Las~S~dgT 472 (627)
+++|..|.+.+.|-+ +.++|+.... ..+.+.- .|. +...+..+.||||+.|+|+||.||.
T Consensus 350 s~~g~~lLsssRDdt-l~viDlRt~e-----------------I~~~~sA-~g~k~asDwtrvvfSpd~~YvaAGS~dgs 410 (459)
T KOG0288|consen 350 SMDGLELLSSSRDDT-LKVIDLRTKE-----------------IRQTFSA-EGFKCASDWTRVVFSPDGSYVAAGSADGS 410 (459)
T ss_pred ccCCeEEeeecCCCc-eeeeeccccc-----------------EEEEeec-cccccccccceeEECCCCceeeeccCCCc
Confidence 999999999999987 7999985110 1233322 122 2234889999999999999999999
Q ss_pred EEEEEcCCC
Q 046828 473 CHIFVLTPF 481 (627)
Q Consensus 473 vhIw~i~~~ 481 (627)
|+||++...
T Consensus 411 v~iW~v~tg 419 (459)
T KOG0288|consen 411 VYIWSVFTG 419 (459)
T ss_pred EEEEEccCc
Confidence 999998753
No 87
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.48 E-value=9e-13 Score=144.41 Aligned_cols=106 Identities=17% Similarity=0.115 Sum_probs=89.4
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
+++..+.+++||.++.+.+..+++|+..|.+|-.++||+.+++||.||+ ||+||+... ++
T Consensus 188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQ-------------------rC 247 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQ-------------------RC 247 (735)
T ss_pred ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeecccc-------------------ce
Confidence 4677899999999999999999999999999999999999999999998 899998511 25
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeec
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVL 487 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~ 487 (627)
+..+ .-|+.. |+++.-+|+=+.+.+|+.||.|..=++..+.....+
T Consensus 248 l~T~-~vH~e~-VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli 293 (735)
T KOG0308|consen 248 LATY-IVHKEG-VWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI 293 (735)
T ss_pred eeeE-EeccCc-eEEEeeCCCcceEEecCCCCcEEecccCCchhheEe
Confidence 5554 334443 999999999999999999999999898876544433
No 88
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=8.9e-14 Score=153.58 Aligned_cols=213 Identities=13% Similarity=0.230 Sum_probs=157.7
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
+.++.+|.+.-+-+|.+....... -+-.|++++.++.+.+.- -||+. |
T Consensus 41 r~~~~Gg~~~k~~L~~i~kp~~i~-S~~~hespIeSl~f~~~E-------------~Llaa---------g--------- 88 (825)
T KOG0267|consen 41 RSLVTGGEDEKVNLWAIGKPNAIT-SLTGHESPIESLTFDTSE-------------RLLAA---------G--------- 88 (825)
T ss_pred eeeccCCCceeeccccccCCchhh-eeeccCCcceeeecCcch-------------hhhcc---------c---------
Confidence 556667777778899988765322 255799999999986532 24331 1
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEc
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~ 236 (627)
. ..++|+||||+.++.+++|. +...+.+|.|+| .+.|.+. +.-+.+||.+..-+.++..+
T Consensus 89 ------s----------asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s 152 (825)
T KOG0267|consen 89 ------S----------ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS 152 (825)
T ss_pred ------c----------cCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC
Confidence 0 23789999999999999998 456999999998 5667664 55699999998778888877
Q ss_pred CCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhc
Q 046828 237 YPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAA 314 (627)
Q Consensus 237 ~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~ 314 (627)
|+-. +..+.|.| ||+|.
T Consensus 153 ~~~v-------------v~~l~lsP~Gr~v~~------------------------------------------------ 171 (825)
T KOG0267|consen 153 HTRV-------------VDVLRLSPDGRWVAS------------------------------------------------ 171 (825)
T ss_pred Ccce-------------eEEEeecCCCceeec------------------------------------------------
Confidence 6432 33333332 34332
Q ss_pred ceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEEC
Q 046828 315 GLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFD 394 (627)
Q Consensus 315 gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFs 394 (627)
+.+|.+|+|||+..++.+..|+.|...|.++.|+
T Consensus 172 ----------------------------------------------g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~h 205 (825)
T KOG0267|consen 172 ----------------------------------------------GGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFH 205 (825)
T ss_pred ----------------------------------------------cCCcceeeeecccccccccccccccccccccccC
Confidence 2357899999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC
Q 046828 395 RSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR 470 (627)
Q Consensus 395 pdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d 470 (627)
|..-+|+++|.|++ +++||++.. ..+-.. +.....|++++|+||++.++++-..
T Consensus 206 p~e~Lla~Gs~d~t-v~f~dletf-------------------e~I~s~--~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 206 PLEVLLAPGSSDRT-VRFWDLETF-------------------EVISSG--KPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred chhhhhccCCCCce-eeeecccee-------------------EEeecc--CCccCCceeeeecCCceeeecCchh
Confidence 99999999999998 799998611 111111 1123459999999999998887543
No 89
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.47 E-value=2.2e-13 Score=156.49 Aligned_cols=151 Identities=17% Similarity=0.144 Sum_probs=123.3
Q ss_pred CCCeEEEEECCC------------CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccc
Q 046828 363 IAGMVVVKDIVS------------RSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQT 430 (627)
Q Consensus 363 ~dG~V~IwD~~s------------~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~ 430 (627)
.||.++||.... .+.+++...|.+.|+|+.|+|||++||+||+|+. |-||+-.+ .. .+..+.+
T Consensus 35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~-v~iW~~~~-~~---~~~~fgs 109 (942)
T KOG0973|consen 35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL-VMIWERAE-IG---SGTVFGS 109 (942)
T ss_pred ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce-EEEeeecc-cC---Ccccccc
Confidence 688888998643 3568889999999999999999999999999975 89999753 11 1111111
Q ss_pred --cCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCCCccCCCC
Q 046828 431 --YDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPVLSVPWW 508 (627)
Q Consensus 431 --~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~~~~~~~ 508 (627)
+....+.++.+...|||+. .|.+++||||+.+||++|.|++|+||+...|+....++.|.+.|+|..++|..++.+.
T Consensus 110 ~g~~~~vE~wk~~~~l~~H~~-DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~AS 188 (942)
T KOG0973|consen 110 TGGAKNVESWKVVSILRGHDS-DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFAS 188 (942)
T ss_pred cccccccceeeEEEEEecCCC-ccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeee
Confidence 2334556777778899874 6999999999999999999999999999999888899999999999999999888777
Q ss_pred CCCccccccCC
Q 046828 509 SSPSFMINQPS 519 (627)
Q Consensus 509 ~~~~~s~~q~~ 519 (627)
.++++++..||
T Consensus 189 qsdDrtikvwr 199 (942)
T KOG0973|consen 189 QSDDRTLKVWR 199 (942)
T ss_pred ecCCceEEEEE
Confidence 77777777666
No 90
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=5.5e-12 Score=128.71 Aligned_cols=99 Identities=24% Similarity=0.338 Sum_probs=63.4
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCC------CCCC---------Cc----c-ccCC---
Q 046828 377 VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKG------RSGS---------AS----Q-TYDW--- 433 (627)
Q Consensus 377 ~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~------~~g~---------~~----~-~~~~--- 433 (627)
.+..+++|.+.|.++||||+.+.++|+|.||+ +||||+.-..+.+ ..|. +. + +++.
T Consensus 270 rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~ 348 (420)
T KOG2096|consen 270 RVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV 348 (420)
T ss_pred hhheeccchhheeeeeeCCCcceeEEEecCCc-EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe
Confidence 35678899999999999999999999999998 8999986322211 0010 00 0 0000
Q ss_pred -CCceeEEEEEeecCC--------cCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 434 -TSSHVHLYKLHRGMT--------SAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 434 -~~~~~~l~~l~rG~t--------~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
..+..+++.-++|.. ...|.+|+|++||+++|+++++ -++|+.
T Consensus 349 s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr-~vrv~~ 400 (420)
T KOG2096|consen 349 SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR-YVRVIR 400 (420)
T ss_pred ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce-eeeeec
Confidence 001123444444432 2348889999999998888654 556665
No 91
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.46 E-value=2.6e-12 Score=136.11 Aligned_cols=106 Identities=14% Similarity=0.252 Sum_probs=88.4
Q ss_pred CCCCCCeEEEEECC--CCeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 360 DTDIAGMVVVKDIV--SRSVISQFRAHTSPISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 360 ~~~~dG~V~IwD~~--s~~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
+.+.|+.+.|||++ +.++....++|..+|.|++|+| ++.+|||||.|++ |++||++ .-.
T Consensus 245 sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-V~LwDlR-nL~---------------- 306 (422)
T KOG0264|consen 245 SVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-VALWDLR-NLN---------------- 306 (422)
T ss_pred eecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc-EEEeech-hcc----------------
Confidence 45689999999999 5677788899999999999999 6788999999999 7999996 210
Q ss_pred eeEEEEEeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCCCeee
Q 046828 437 HVHLYKLHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTPFGGETV 486 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~gg~~~ 486 (627)
..++.+ .||.. .|..|.||| ....||+++.|+.++|||+..-++...
T Consensus 307 -~~lh~~-e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 307 -KPLHTF-EGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS 354 (422)
T ss_pred -cCceec-cCCCc-ceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence 256666 56654 599999999 567899999999999999998877654
No 92
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=1.4e-11 Score=139.51 Aligned_cols=239 Identities=13% Similarity=0.192 Sum_probs=162.9
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.|.+.-.-++||. .+.-+++.|.++-+++|+.....+--|.+-.+.-.|..+.... ..+
T Consensus 11 aht~G~t~i~~d~------~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s---------------~~f 69 (933)
T KOG1274|consen 11 AHTGGLTLICYDP------DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS---------------NHF 69 (933)
T ss_pred hccCceEEEEEcC------CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc---------------cce
Confidence 3444445566652 2357888999999999999875332333333333444433321 222
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEE-ecCCeEEEEEec--CcEEEEEe
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVL-RFRSTVYMVRCS--PRIVAVGL 216 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL-~f~s~V~sV~~s--~~~LaV~~ 216 (627)
++.+ .+++|.+|-.-.++.=.-| +|.-++..++++ +..+|.|.
T Consensus 70 ~~~s----------------------------------~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaags 115 (933)
T KOG1274|consen 70 LTGS----------------------------------EQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGS 115 (933)
T ss_pred EEee----------------------------------ccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeec
Confidence 2211 2478999988877653333 255556666665 57888887
Q ss_pred CC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCC
Q 046828 217 AA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPST 293 (627)
Q Consensus 217 ~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~ 293 (627)
++ .|+|-+..+....+.+++|..| +-.+.+.| .+||..
T Consensus 116 dD~~vK~~~~~D~s~~~~lrgh~ap-------------Vl~l~~~p~~~fLAvs-------------------------- 156 (933)
T KOG1274|consen 116 DDTAVKLLNLDDSSQEKVLRGHDAP-------------VLQLSYDPKGNFLAVS-------------------------- 156 (933)
T ss_pred CceeEEEEeccccchheeecccCCc-------------eeeeeEcCCCCEEEEE--------------------------
Confidence 76 6999999998888889888665 22244433 233332
Q ss_pred CCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC
Q 046828 294 SPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV 373 (627)
Q Consensus 294 s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~ 373 (627)
..||.|+|||++
T Consensus 157 --------------------------------------------------------------------s~dG~v~iw~~~ 168 (933)
T KOG1274|consen 157 --------------------------------------------------------------------SCDGKVQIWDLQ 168 (933)
T ss_pred --------------------------------------------------------------------ecCceEEEEEcc
Confidence 368999999999
Q ss_pred CCeEEEEeccC--------CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee
Q 046828 374 SRSVISQFRAH--------TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR 445 (627)
Q Consensus 374 s~~~l~~~~aH--------~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r 445 (627)
++....++..- ...+..++|+|+|..||....|+. |.+|+.. .+ .++++|+.
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~-------~w------------e~~f~Lr~ 228 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRK-------GW------------ELQFKLRD 228 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccC-------Cc------------eeheeecc
Confidence 88665554431 456788999999777777777877 7999975 23 37788865
Q ss_pred cCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 446 GMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 446 G~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
-+....+.++.|||.|+|||+++.||-|-||+++.
T Consensus 229 ~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 229 KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 55555699999999999999999999999999983
No 93
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=1.1e-10 Score=114.53 Aligned_cols=252 Identities=15% Similarity=0.167 Sum_probs=169.6
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEe-ccCcEEEEecCCCC----CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCC
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLG-YSNGFQVLDVEDAT----NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNS 135 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~G-y~~G~qVWdv~~~~----~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~ 135 (627)
+|..|+...|..+ ..++..| -++.+++.-.+... .-.--++.|||.||-+.++-.|.. .
T Consensus 88 hkgsiyc~~ws~~-------geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s---------~ 151 (350)
T KOG0641|consen 88 HKGSIYCTAWSPC-------GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPES---------G 151 (350)
T ss_pred cCccEEEEEecCc-------cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCc---------C
Confidence 4667777888654 3345544 46778887655321 111235789999999999866632 2
Q ss_pred CCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEE-EecCcEEE
Q 046828 136 HPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMV-RCSPRIVA 213 (627)
Q Consensus 136 rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV-~~s~~~La 213 (627)
..+|+. .| . -++.|-+-|..+|+..+.+..+ ..|.++ .+|.-+++
T Consensus 152 ~~il~s--------~g---------------a----------gdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~ 198 (350)
T KOG0641|consen 152 GAILAS--------AG---------------A----------GDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFA 198 (350)
T ss_pred ceEEEe--------cC---------------C----------CcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEE
Confidence 234432 11 0 1488889999999999999855 477774 56778888
Q ss_pred EEeCC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCC
Q 046828 214 VGLAA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVS 290 (627)
Q Consensus 214 V~~~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s 290 (627)
++..+ +|+.||++-..++.++.+.-. +-|+.... +..+++.| |+||
T Consensus 199 sgsqdktirfwdlrv~~~v~~l~~~~~----~~glessa--vaav~vdpsgrll~------------------------- 247 (350)
T KOG0641|consen 199 SGSQDKTIRFWDLRVNSCVNTLDNDFH----DGGLESSA--VAAVAVDPSGRLLA------------------------- 247 (350)
T ss_pred ccCCCceEEEEeeeccceeeeccCccc----CCCcccce--eEEEEECCCcceee-------------------------
Confidence 88655 699999987777766643111 01111100 22233322 2222
Q ss_pred CCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEE
Q 046828 291 PSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVK 370 (627)
Q Consensus 291 ~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~Iw 370 (627)
++..|....+|
T Consensus 248 ---------------------------------------------------------------------sg~~dssc~ly 258 (350)
T KOG0641|consen 248 ---------------------------------------------------------------------SGHADSSCMLY 258 (350)
T ss_pred ---------------------------------------------------------------------eccCCCceEEE
Confidence 23456778999
Q ss_pred ECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC
Q 046828 371 DIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA 450 (627)
Q Consensus 371 D~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a 450 (627)
|+..++.+..|.+|+..|.|+.|+|...+|.|+|-|-. |++=|+. |. +.. .+-..--+.+..
T Consensus 259 dirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlq--------gd------la~---el~~~vv~ehkd 320 (350)
T KOG0641|consen 259 DIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQ--------GD------LAH---ELPIMVVAEHKD 320 (350)
T ss_pred EeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeecc--------cc------hhh---cCceEEEEeccC
Confidence 99999999999999999999999999999999999976 8999885 21 111 111111122334
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 451 VIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 451 ~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
++..+.|.|..--++++|.|.|+.+|.++
T Consensus 321 k~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 321 KAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEecCccceeeeccCcceEEEeccC
Confidence 56778999999899999999999999886
No 94
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.44 E-value=1.3e-12 Score=129.47 Aligned_cols=216 Identities=16% Similarity=0.124 Sum_probs=142.4
Q ss_pred CCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCCe-EEEEeCCCCce-eEEEEcCCCCCCCCCCCcCc
Q 046828 175 VAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAAQ-IYCFDALTLES-KFSVLTYPVPHFGGQGTSGV 250 (627)
Q Consensus 175 ~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~~-I~i~D~~t~e~-~~tl~~~p~~~~~~~g~~~~ 250 (627)
++..+-+-++||.-||.++|+++++.-|.+++|++ +.|+.|..++ ++|||++..+- ...+.+|+... -
T Consensus 76 saaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~I------r-- 147 (334)
T KOG0278|consen 76 SAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGI------R-- 147 (334)
T ss_pred hhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcc------e--
Confidence 34557889999999999999999999999999997 5666665554 78999887553 23344444210 0
Q ss_pred ccccceeeEc-CceEEEcCCCCCcCCCCccC---CCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeE
Q 046828 251 NIGYGPMAVG-PRWLAYASNNPLLPNTGRLS---PQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKT 326 (627)
Q Consensus 251 ~~~~~~iAl~-~r~LAy~~~~~~v~~~gr~~---~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~ 326 (627)
.-.+..+ ...|..+. +..+++|.+.. .|++.-+
T Consensus 148 ---~v~wc~eD~~iLSSad-d~tVRLWD~rTgt~v~sL~~~--------------------------------------- 184 (334)
T KOG0278|consen 148 ---TVLWCHEDKCILSSAD-DKTVRLWDHRTGTEVQSLEFN--------------------------------------- 184 (334)
T ss_pred ---eEEEeccCceEEeecc-CCceEEEEeccCcEEEEEecC---------------------------------------
Confidence 0011111 13444453 34555554431 1111000
Q ss_pred EeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC
Q 046828 327 LSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH 406 (627)
Q Consensus 327 ~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d 406 (627)
+++.+-.-...|++. .....+.|..||..+...++.++.. ..|.+.+++|+-..++.+.+|
T Consensus 185 --------------s~VtSlEvs~dG~il----Tia~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged 245 (334)
T KOG0278|consen 185 --------------SPVTSLEVSQDGRIL----TIAYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGED 245 (334)
T ss_pred --------------CCCcceeeccCCCEE----EEecCceeEEeccccccceeeccCc-cccccccccCCCceEEecCcc
Confidence 000000000012222 1235678999999999999888863 468899999999999999999
Q ss_pred CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 407 GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 407 Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
+. ++.||.. +|. .+-....||.. .|.++.|||||...|++|.||||+||...+.
T Consensus 246 ~~-~~kfDy~-------Tge------------Ei~~~nkgh~g-pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 246 FK-VYKFDYN-------TGE------------EIGSYNKGHFG-PVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred eE-EEEEecc-------CCc------------eeeecccCCCC-ceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 97 6889976 331 23223467654 5999999999999999999999999999764
No 95
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.44 E-value=1e-11 Score=139.83 Aligned_cols=184 Identities=18% Similarity=0.193 Sum_probs=126.4
Q ss_pred CCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC---cEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCC
Q 046828 171 QPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP---RIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQG 246 (627)
Q Consensus 171 ~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~---~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g 246 (627)
+..-+..+++|||||++.+.++++++.+..-|.+|+|+| +++++| +|++|+||++..-+..+-- ....
T Consensus 381 ~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~---Dl~~----- 452 (712)
T KOG0283|consen 381 NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN---DLRD----- 452 (712)
T ss_pred CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeeh---hhhh-----
Confidence 334457789999999999999999999999999999998 677766 7899999999875533211 1110
Q ss_pred CcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeE
Q 046828 247 TSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKT 326 (627)
Q Consensus 247 ~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~ 326 (627)
+ +. -+.|.++
T Consensus 453 l------IT-------Avcy~Pd--------------------------------------------------------- 462 (712)
T KOG0283|consen 453 L------IT-------AVCYSPD--------------------------------------------------------- 462 (712)
T ss_pred h------he-------eEEeccC---------------------------------------------------------
Confidence 0 11 1233332
Q ss_pred EeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEec--cC------CCCeEEEEECCCCC
Q 046828 327 LSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFR--AH------TSPISALCFDRSGT 398 (627)
Q Consensus 327 ~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~--aH------~~~Is~laFspdG~ 398 (627)
|. +.+ .|..+|.+++|++...+.+..+. -| ...|+.+.|.|.-.
T Consensus 463 -----------Gk------------~av-----IGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~ 514 (712)
T KOG0283|consen 463 -----------GK------------GAV-----IGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDP 514 (712)
T ss_pred -----------Cc------------eEE-----EEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCC
Confidence 11 000 24567899999998876655443 22 12699999997544
Q ss_pred --EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCc-EEEEEEccCCCEEEEEeCCCeEEE
Q 046828 399 --LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAV-IQDICFSHYSQWIAIVSSRGTCHI 475 (627)
Q Consensus 399 --lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~-I~sIaFSpDg~~Las~S~dgTvhI 475 (627)
+|+| |.|-. |||||.... ..+.+| .|..+.. -..-.|+.||++|+++++|.-|+|
T Consensus 515 ~~vLVT-SnDSr-IRI~d~~~~-------------------~lv~Kf-KG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 515 DEVLVT-SNDSR-IRIYDGRDK-------------------DLVHKF-KGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred CeEEEe-cCCCc-eEEEeccch-------------------hhhhhh-cccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 5555 66666 899998411 123333 4544433 455689999999999999999999
Q ss_pred EEcCCCC
Q 046828 476 FVLTPFG 482 (627)
Q Consensus 476 w~i~~~g 482 (627)
|++..+.
T Consensus 573 W~~~~~~ 579 (712)
T KOG0283|consen 573 WKNDSFN 579 (712)
T ss_pred EeCCCCc
Confidence 9987654
No 96
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.43 E-value=2.7e-12 Score=142.50 Aligned_cols=143 Identities=17% Similarity=0.147 Sum_probs=102.7
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
...|.+.|+|+.+...+-+++||...|..|+.+||++.++|||.|.+ |++||..-.... .|+ ..+..
T Consensus 431 ~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt-VkfWdf~l~~~~--~gt----------~~k~l 497 (888)
T KOG0306|consen 431 TKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKT-VKFWDFKLVVSV--PGT----------QKKVL 497 (888)
T ss_pred ccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcE-EEEEeEEEEecc--Ccc----------cceee
Confidence 46789999999999999999999999999999999999999999977 899997522111 111 11212
Q ss_pred EEeec---CCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCCCccCCCCCCCcccccc
Q 046828 442 KLHRG---MTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPVLSVPWWSSPSFMINQ 517 (627)
Q Consensus 442 ~l~rG---~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~~~~~~~~~~~~s~~q 517 (627)
.+..- .-...|.++++|||+++||++=.|.|||||-++...-..++.+|.-.|.....+|-+++--+-+-+.+++.
T Consensus 498 sl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKi 576 (888)
T KOG0306|consen 498 SLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKI 576 (888)
T ss_pred eeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEE
Confidence 22110 01235999999999999999999999999999998888888888654443333443333333333334433
No 97
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.43 E-value=2.2e-12 Score=143.76 Aligned_cols=116 Identities=15% Similarity=0.205 Sum_probs=88.6
Q ss_pred CCCCCeEEEEECCCC-eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 361 TDIAGMVVVKDIVSR-SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
+.+.|.+++||++.. +....|.||.+||.|+.|+|++.+||||+.|+. |+|||.. . +.. ..
T Consensus 195 ~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t-~------~~~----------~~ 256 (839)
T KOG0269|consen 195 IHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMT-D------SRA----------KP 256 (839)
T ss_pred ecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEecc-C------CCc----------cc
Confidence 457899999999864 567789999999999999999999999999998 8999985 1 110 13
Q ss_pred EEEEeecCCcCcEEEEEEccCCCE-EEEEeC--CCeEEEEEcC-CCCCeeecccccccccCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQW-IAIVSS--RGTCHIFVLT-PFGGETVLQIQNSHVDRP 497 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~-Las~S~--dgTvhIw~i~-~~gg~~~~~~h~s~v~~~ 497 (627)
+... +|.+.|..+.|-|+-++ ||+++. |-.||||++. ||=....+..|...+.+.
T Consensus 257 ~~tI---nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i 315 (839)
T KOG0269|consen 257 KHTI---NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI 315 (839)
T ss_pred eeEE---eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccce
Confidence 3333 35578999999997765 444443 6689999996 555666778887666554
No 98
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.42 E-value=5.7e-12 Score=124.22 Aligned_cols=130 Identities=16% Similarity=0.195 Sum_probs=96.3
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCC-------CCCCCc----
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKG-------RSGSAS---- 428 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~-------~~g~~~---- 428 (627)
+++.|..|.+||+.+++++..|++|...|++++|+.+...+++||.|.+ +|+||-....... ..|-..
T Consensus 76 s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s-~r~wDCRS~s~ePiQildea~D~V~Si~v~ 154 (307)
T KOG0316|consen 76 SCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSS-VRLWDCRSRSFEPIQILDEAKDGVSSIDVA 154 (307)
T ss_pred cCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccce-eEEEEcccCCCCccchhhhhcCceeEEEec
Confidence 4567899999999999999999999999999999999999999999987 8999975211000 000000
Q ss_pred ----cccCCCCceeEEEEEeecCCc-----CcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccc
Q 046828 429 ----QTYDWTSSHVHLYKLHRGMTS-----AVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQN 491 (627)
Q Consensus 429 ----~~~~~~~~~~~l~~l~rG~t~-----a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~ 491 (627)
-.+.... ..+.|.+|.|.-. ..|++++||+|++.+.+++.++|+|+.|-++-.-.....+|.
T Consensus 155 ~heIvaGS~DG-tvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk 225 (307)
T KOG0316|consen 155 EHEIVAGSVDG-TVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK 225 (307)
T ss_pred ccEEEeeccCC-cEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc
Confidence 0111112 2578888877532 359999999999999999999999999976544444444553
No 99
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.42 E-value=7.2e-13 Score=145.13 Aligned_cols=190 Identities=16% Similarity=0.234 Sum_probs=140.9
Q ss_pred CcEEEEEECCCCc------eEEEEecCC-eEEEEEec--CcEEEEEe-CCeEEEEeCCCC--ceeEEEEcCCCCCCCCCC
Q 046828 179 PTAVRFYSLRSHN------YVHVLRFRS-TVYMVRCS--PRIVAVGL-AAQIYCFDALTL--ESKFSVLTYPVPHFGGQG 246 (627)
Q Consensus 179 ~~tV~lwdl~t~~------~V~tL~f~s-~V~sV~~s--~~~LaV~~-~~~I~i~D~~t~--e~~~tl~~~p~~~~~~~g 246 (627)
++.|++|+..... ++.+++.++ +|.++... .+.|+++. +.+|++|++... -++.+|.+|..-
T Consensus 46 Dg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DY------ 119 (735)
T KOG0308|consen 46 DGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDY------ 119 (735)
T ss_pred CceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccch------
Confidence 4789999986543 477888665 89887764 35666664 568999999876 355666666431
Q ss_pred CcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeE
Q 046828 247 TSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKT 326 (627)
Q Consensus 247 ~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~ 326 (627)
+ ..|||+..... +
T Consensus 120 ----------V----kcla~~ak~~~---------------------------------------l-------------- 132 (735)
T KOG0308|consen 120 ----------V----KCLAYIAKNNE---------------------------------------L-------------- 132 (735)
T ss_pred ----------h----eeeeecccCce---------------------------------------e--------------
Confidence 1 34677432100 0
Q ss_pred EeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe--E--------EEEec-cCCCCeEEEEECC
Q 046828 327 LSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS--V--------ISQFR-AHTSPISALCFDR 395 (627)
Q Consensus 327 ~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~--~--------l~~~~-aH~~~Is~laFsp 395 (627)
+ ++++-|+.|.|||+.++. . ...+. +|..+|++|+.++
T Consensus 133 ---------------------------v----aSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 133 ---------------------------V----ASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ 181 (735)
T ss_pred ---------------------------E----EecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence 0 145689999999999772 2 23333 7888999999999
Q ss_pred CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEE
Q 046828 396 SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHI 475 (627)
Q Consensus 396 dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhI 475 (627)
.|++|+.|+.++- +|+||-. ++ .++.+| ||||. .|..|-.++||+.++++|+||||+|
T Consensus 182 t~t~ivsGgtek~-lr~wDpr-------t~------------~kimkL-rGHTd-NVr~ll~~dDGt~~ls~sSDgtIrl 239 (735)
T KOG0308|consen 182 TGTIIVSGGTEKD-LRLWDPR-------TC------------KKIMKL-RGHTD-NVRVLLVNDDGTRLLSASSDGTIRL 239 (735)
T ss_pred cceEEEecCcccc-eEEeccc-------cc------------cceeee-ecccc-ceEEEEEcCCCCeEeecCCCceEEe
Confidence 9999999999986 8999964 22 377888 49985 5999999999999999999999999
Q ss_pred EEcCCCCCeeecccccccc
Q 046828 476 FVLTPFGGETVLQIQNSHV 494 (627)
Q Consensus 476 w~i~~~gg~~~~~~h~s~v 494 (627)
|++.......++..|...|
T Consensus 240 WdLgqQrCl~T~~vH~e~V 258 (735)
T KOG0308|consen 240 WDLGQQRCLATYIVHKEGV 258 (735)
T ss_pred eeccccceeeeEEeccCce
Confidence 9998887777777775543
No 100
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.41 E-value=8.1e-11 Score=120.33 Aligned_cols=175 Identities=14% Similarity=0.138 Sum_probs=122.4
Q ss_pred CcEEEEEECCCCceEEEEecCCeEEEEEecC--cEE-EEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIV-AVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~L-aV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
+++|++||+.+++.++++.....+..+.+++ +.| +++. ++.|++||+.+++....+..+..
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--------------- 74 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD--------------- 74 (300)
T ss_pred CCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC---------------
Confidence 4789999999999999998776678889986 455 4443 56899999999887655533211
Q ss_pred ceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccc
Q 046828 255 GPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDF 334 (627)
Q Consensus 255 ~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~ 334 (627)
++.+++.++... + |
T Consensus 75 ------~~~~~~~~~g~~------------------------------------------------------l--~---- 88 (300)
T TIGR03866 75 ------PELFALHPNGKI------------------------------------------------------L--Y---- 88 (300)
T ss_pred ------ccEEEECCCCCE------------------------------------------------------E--E----
Confidence 123343332100 0 0
Q ss_pred cCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEe
Q 046828 335 IPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFR 414 (627)
Q Consensus 335 ~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwd 414 (627)
.....++.|++||+.+.+.+..+..+ ..+..++|+|+|.+|++++.++..+.+||
T Consensus 89 ------------------------~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d 143 (300)
T TIGR03866 89 ------------------------IANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFID 143 (300)
T ss_pred ------------------------EEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEe
Confidence 01235679999999998888888643 34688999999999999998877678888
Q ss_pred CCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCC
Q 046828 415 IMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPF 481 (627)
Q Consensus 415 i~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~ 481 (627)
.. ++. .+..+..+ ..+..++|++|+++|++++ .+++|++|++...
T Consensus 144 ~~-------~~~------------~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 144 TK-------TYE------------IVDNVLVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred CC-------CCe------------EEEEEEcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 74 221 22222222 2357899999999997655 5999999999754
No 101
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.40 E-value=1.5e-10 Score=117.78 Aligned_cols=277 Identities=14% Similarity=0.172 Sum_probs=170.9
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEE-EEeccCcEEEEecCCCCC-ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVL-LLGYSNGFQVLDVEDATN-VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl-~~Gy~~G~qVWdv~~~~~-~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
...|.|.-..|-.. ...++ ....|+.+++|++++.+. +-...-.|+|||=.+.+.-. ..
T Consensus 25 pP~DsIS~l~FSP~------~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd-------------gs 85 (347)
T KOG0647|consen 25 PPEDSISALAFSPQ------ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD-------------GS 85 (347)
T ss_pred CcccchheeEeccc------cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC-------------Cc
Confidence 35677888888541 13344 566799999999998641 12223345565544444321 12
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC----cEEE
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP----RIVA 213 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~----~~La 213 (627)
.+++.+ .++.+++|||.+++....-.+..+|..++|=+ ..|+
T Consensus 86 kVf~g~----------------------------------~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~ 131 (347)
T KOG0647|consen 86 KVFSGG----------------------------------CDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLV 131 (347)
T ss_pred eEEeec----------------------------------cCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeE
Confidence 332211 24679999999997766666788999999854 5678
Q ss_pred EEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 214 VGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 214 V~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
.|. +.+|+.||.+.-..+.++.- |+ | .|+
T Consensus 132 TGSWDKTlKfWD~R~~~pv~t~~L---Pe--------------------R--vYa------------------------- 161 (347)
T KOG0647|consen 132 TGSWDKTLKFWDTRSSNPVATLQL---PE--------------------R--VYA------------------------- 161 (347)
T ss_pred ecccccceeecccCCCCeeeeeec---cc--------------------e--eee-------------------------
Confidence 886 55799999997776666532 21 0 111
Q ss_pred CCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI 372 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~ 372 (627)
++.-..++. -+..+..|.+|++
T Consensus 162 -------------~Dv~~pm~v---------------------------------------------Vata~r~i~vynL 183 (347)
T KOG0647|consen 162 -------------ADVLYPMAV---------------------------------------------VATAERHIAVYNL 183 (347)
T ss_pred -------------hhccCceeE---------------------------------------------EEecCCcEEEEEc
Confidence 111000100 0123456778888
Q ss_pred CCCeEEEEeccCCCC----eEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCC
Q 046828 373 VSRSVISQFRAHTSP----ISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMT 448 (627)
Q Consensus 373 ~s~~~l~~~~aH~~~----Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t 448 (627)
++.. ..|+.+.+| +.||+.-+|....|.||.+|. +-|..+.+... ...-.++.+|...
T Consensus 184 ~n~~--te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~~~---------------~~nFtFkCHR~~~ 245 (347)
T KOG0647|consen 184 ENPP--TEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDPNP---------------KDNFTFKCHRSTN 245 (347)
T ss_pred CCCc--chhhhhcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCCCc---------------cCceeEEEeccCC
Confidence 7653 456666665 788998888888899999998 67887763100 1125667777311
Q ss_pred --cC---cEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCCCccCCCCCCC-cccc
Q 046828 449 --SA---VIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPVLSVPWWSSP-SFMI 515 (627)
Q Consensus 449 --~a---~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~~~~~~~~~~-~~s~ 515 (627)
.. .|.+|+|.|.-..|+++++|||+-.||-+....+.....|......-.+.....+..|... +||-
T Consensus 246 ~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYDWSk 318 (347)
T KOG0647|consen 246 SVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYDWSK 318 (347)
T ss_pred CCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeeccccc
Confidence 12 2788999999999999999999999998776555444455432222122222344445433 5653
No 102
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.40 E-value=4.3e-11 Score=121.21 Aligned_cols=138 Identities=14% Similarity=0.181 Sum_probs=90.9
Q ss_pred EEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC--CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEcc
Q 046828 68 SSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT--NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACD 145 (627)
Q Consensus 68 a~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~--~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d 145 (627)
=+.+.|+++..+++.+|..|.++.+-|||+++.. +..-++..| +.+.-.+.. +..+|+.. -+.|-
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~------~c~v~~~h~--~~Hky~is-----s~~Wy 110 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH------KCIVAKQHE--NGHKYAIS-----SAIWY 110 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehe------eeeccccCC--ccceeeee-----eeEEe
Confidence 4556677777788999999999999999999876 333333322 111111110 00111110 01110
Q ss_pred CccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC-----cEEEEEeCC-e
Q 046828 146 EAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP-----RIVAVGLAA-Q 219 (627)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~-----~~LaV~~~~-~ 219 (627)
|. |. |-.. +...+.+|++||..|-+.+-+++++..||+-++++ -+||+|..+ +
T Consensus 111 ------P~----Dt-GmFt----------ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~ 169 (397)
T KOG4283|consen 111 ------PI----DT-GMFT----------SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQ 169 (397)
T ss_pred ------ee----cC-ceee----------cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCc
Confidence 00 00 0001 12246899999999999999999999999988876 477888766 8
Q ss_pred EEEEeCCCCceeEEEEcCCC
Q 046828 220 IYCFDALTLESKFSVLTYPV 239 (627)
Q Consensus 220 I~i~D~~t~e~~~tl~~~p~ 239 (627)
|++-|+.+|..-+++.+|..
T Consensus 170 VrLCDi~SGs~sH~LsGHr~ 189 (397)
T KOG4283|consen 170 VRLCDIASGSFSHTLSGHRD 189 (397)
T ss_pred EEEEeccCCcceeeeccccC
Confidence 99999999999999998854
No 103
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.39 E-value=1.2e-11 Score=132.77 Aligned_cols=111 Identities=21% Similarity=0.287 Sum_probs=81.3
Q ss_pred CCCCCCeEEEEECCCCe---EEEEeccCCC--CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCC
Q 046828 360 DTDIAGMVVVKDIVSRS---VISQFRAHTS--PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWT 434 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~---~l~~~~aH~~--~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~ 434 (627)
.+..||.|.+||..+.. ..+.-+||.. .|+||+||+||++|++-+.|++ ++|||+....
T Consensus 334 agc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWDLrq~k--------------- 397 (641)
T KOG0772|consen 334 AGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWDLRQFK--------------- 397 (641)
T ss_pred hcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeeeccccc---------------
Confidence 35679999999986542 2444569987 8999999999999999999998 7999996211
Q ss_pred CceeEEEEEeecCCc-CcEEEEEEccCCCEEEEEeC------CCeEEEEEcCCCCCeeecccc
Q 046828 435 SSHVHLYKLHRGMTS-AVIQDICFSHYSQWIAIVSS------RGTCHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 435 ~~~~~l~~l~rG~t~-a~I~sIaFSpDg~~Las~S~------dgTvhIw~i~~~gg~~~~~~h 490 (627)
..|... .|..+ -.-.+++||||.+.|++|++ -|++.+|+-..+.....+...
T Consensus 398 ---kpL~~~-tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~ 456 (641)
T KOG0772|consen 398 ---KPLNVR-TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS 456 (641)
T ss_pred ---cchhhh-cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence 122221 33322 23578999999999999876 568888888777655544433
No 104
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.39 E-value=5.8e-12 Score=128.10 Aligned_cols=98 Identities=16% Similarity=0.259 Sum_probs=80.8
Q ss_pred CeEEEEECCCCeEEEEe---ccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 365 GMVVVKDIVSRSVISQF---RAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~---~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
-++++||+.+.++...- ..|+..|.++.+|+.|++-+|||.||. |+|||=- ++ +++.
T Consensus 238 p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGV-------S~------------rCv~ 297 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA-IKLWDGV-------SN------------RCVR 297 (430)
T ss_pred CceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCc-EEeeccc-------cH------------HHHH
Confidence 35788888877653322 258899999999999999999999998 8999953 22 3566
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
.+.+.|..+.|.+..|+.|++||.+++.|.+|++|.|....
T Consensus 298 t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 298 TIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred HHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 66677777889999999999999999999999999998653
No 105
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.38 E-value=3.8e-11 Score=135.32 Aligned_cols=99 Identities=15% Similarity=0.348 Sum_probs=84.4
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
+++.|.+|++|++...++++.|. |..-|+||+|+| |.+++++||.||. +|||+|. ... +.
T Consensus 385 SSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~K-vRiWsI~-d~~----------------Vv 445 (712)
T KOG0283|consen 385 SSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGK-VRLWSIS-DKK----------------VV 445 (712)
T ss_pred eccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccc-eEEeecC-cCe----------------eE
Confidence 56889999999999999999997 999999999999 8899999999998 7999994 321 12
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
.-++++ .-|+.++|+|||++.++|+.+|.+++|+.....
T Consensus 446 ~W~Dl~-----~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 446 DWNDLR-----DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred eehhhh-----hhheeEEeccCCceEEEEEeccEEEEEEccCCe
Confidence 233332 249999999999999999999999999987544
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.36 E-value=3.2e-11 Score=133.26 Aligned_cols=216 Identities=16% Similarity=0.182 Sum_probs=159.3
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
.+++..|-|..+-||.+.... ..-.|-.|+..|.++...-.+ . +++
T Consensus 72 ~~l~~g~~D~~i~v~~~~~~~-P~~~LkgH~snVC~ls~~~~~--------------~--~iS----------------- 117 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQAE-PLYTLKGHKSNVCSLSIGEDG--------------T--LIS----------------- 117 (745)
T ss_pred cceEeecccceEEEEecCCCC-chhhhhccccceeeeecCCcC--------------c--eEe-----------------
Confidence 457788888889999998754 456677888988887754221 1 222
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC-cEEEEEeCC-eEEEEeCCCCceeEEEEcC
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP-RIVAVGLAA-QIYCFDALTLESKFSVLTY 237 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~-~~LaV~~~~-~I~i~D~~t~e~~~tl~~~ 237 (627)
|+|| +|+++|- -++++.+++ |.+.|++|..-+ ..+++|.++ .|++|.. ++.+.++.+|
T Consensus 118 -----gSWD----------~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gH 178 (745)
T KOG0301|consen 118 -----GSWD----------STAKVWR--IGELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGH 178 (745)
T ss_pred -----cccc----------cceEEec--chhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhhhhccc
Confidence 5676 8899994 567777787 556999988765 666777655 6999987 5567788887
Q ss_pred CCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccee
Q 046828 238 PVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLI 317 (627)
Q Consensus 238 p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~ 317 (627)
..- + |-||.-+..
T Consensus 179 tD~-------------V-------RgL~vl~~~----------------------------------------------- 191 (745)
T KOG0301|consen 179 TDC-------------V-------RGLAVLDDS----------------------------------------------- 191 (745)
T ss_pred hhh-------------e-------eeeEEecCC-----------------------------------------------
Confidence 542 1 445544321
Q ss_pred ecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCC
Q 046828 318 NLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSG 397 (627)
Q Consensus 318 ~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG 397 (627)
+..+++.||.|+.||+ +++.+....+|++-|.+++..+++
T Consensus 192 ---------------------------------------~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~ 231 (745)
T KOG0301|consen 192 ---------------------------------------HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSD 231 (745)
T ss_pred ---------------------------------------CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCC
Confidence 1124578999999999 788999999999999999999999
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 398 TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 398 ~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
.+++|+++|+| +|||+.. .. ....++ ....|+++.+=++|. |+++++||-|+||.
T Consensus 232 ~~Ivs~gEDrt-lriW~~~-e~------------------~q~I~l----PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 232 GLIVSTGEDRT-LRIWKKD-EC------------------VQVITL----PTTSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred CeEEEecCCce-EEEeecC-ce------------------EEEEec----CccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 99999999998 7999974 11 123333 112489998888876 56888999999999
Q ss_pred cCCC
Q 046828 478 LTPF 481 (627)
Q Consensus 478 i~~~ 481 (627)
..+.
T Consensus 287 ~~k~ 290 (745)
T KOG0301|consen 287 VDKD 290 (745)
T ss_pred eccc
Confidence 8754
No 107
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.34 E-value=8.8e-12 Score=127.20 Aligned_cols=216 Identities=14% Similarity=0.211 Sum_probs=149.3
Q ss_pred CcCCcEEEEEECCCCceEEEEec---------CCeEEEEEecC--cEEEEE-eCCeEEEEeCCCCceeEEEEc-CCCCCC
Q 046828 176 AMSPTAVRFYSLRSHNYVHVLRF---------RSTVYMVRCSP--RIVAVG-LAAQIYCFDALTLESKFSVLT-YPVPHF 242 (627)
Q Consensus 176 ~~~~~tV~lwdl~t~~~V~tL~f---------~s~V~sV~~s~--~~LaV~-~~~~I~i~D~~t~e~~~tl~~-~p~~~~ 242 (627)
...++-|.+|+.-+|+.-+.|++ ..+|.+|.|++ .+||+| .+++|++|.+.|+++++.+.. |..
T Consensus 231 gSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtk--- 307 (508)
T KOG0275|consen 231 GSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTK--- 307 (508)
T ss_pred ccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhcc---
Confidence 34568899999999998887764 35899999998 688988 477999999999999887753 322
Q ss_pred CCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCc
Q 046828 243 GGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDM 322 (627)
Q Consensus 243 ~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~ 322 (627)
| +..+. |+-+..
T Consensus 308 ---G-------vt~l~-------FSrD~S--------------------------------------------------- 319 (508)
T KOG0275|consen 308 ---G-------VTCLS-------FSRDNS--------------------------------------------------- 319 (508)
T ss_pred ---C-------eeEEE-------EccCcc---------------------------------------------------
Confidence 1 12222 222110
Q ss_pred ceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEE
Q 046828 323 GYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVT 402 (627)
Q Consensus 323 g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaT 402 (627)
+..+++.|-+|+|.-+++++.+..|++|.+-|+...|.+||..+++
T Consensus 320 ----------------------------------qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 320 ----------------------------------QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred ----------------------------------hhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEE
Confidence 0013467889999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeCCCCCCCC---CCCCC--ccc-cCCCCceeEEEEE-------------------eecCCc-CcEEEEE
Q 046828 403 ASIHGNNINIFRIMPSSSKG---RSGSA--SQT-YDWTSSHVHLYKL-------------------HRGMTS-AVIQDIC 456 (627)
Q Consensus 403 aS~dGt~I~Vwdi~p~~~~~---~~g~~--~~~-~~~~~~~~~l~~l-------------------~rG~t~-a~I~sIa 456 (627)
||.||+ |+||+.+...... +-|+- .-+ ...+....|..-. ..|... ....+.+
T Consensus 366 aSsDgt-vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 366 ASSDGT-VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred ecCCcc-EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEE
Confidence 999999 7999986321110 00000 000 0000001111111 112111 2255678
Q ss_pred EccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCC
Q 046828 457 FSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRP 497 (627)
Q Consensus 457 FSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~ 497 (627)
.||.|.|+.+.+.|+....|.+...+-...+.-|...+.|.
T Consensus 445 lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl 485 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGL 485 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccccccc
Confidence 99999999999999999999998777666777776655554
No 108
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=1.8e-12 Score=143.42 Aligned_cols=176 Identities=15% Similarity=0.243 Sum_probs=134.7
Q ss_pred cEEEEEECCCCceEEEEec-CCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccc
Q 046828 180 TAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYG 255 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~ 255 (627)
.++-||..-.-..+..|.. .++|.+|.|+. ++|+.|. ++.|++||+...+.+++|.+|-.+
T Consensus 50 ~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~--------------- 114 (825)
T KOG0267|consen 50 EKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN--------------- 114 (825)
T ss_pred eeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccC---------------
Confidence 6677887776666777774 56999999986 6666665 558999999999989998887543
Q ss_pred eeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecccc
Q 046828 256 PMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFI 335 (627)
Q Consensus 256 ~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~ 335 (627)
++.+ +|-+. ..|+
T Consensus 115 ~~sv-----~f~P~----------------------------------------------------------~~~~---- 127 (825)
T KOG0267|consen 115 ITSV-----DFHPY----------------------------------------------------------GEFF---- 127 (825)
T ss_pred ccee-----eeccc----------------------------------------------------------eEEe----
Confidence 1111 11110 0111
Q ss_pred CCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 336 PDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 336 p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
+.++.|+...+||++...+...++.|..-|..++|+|+|++++.+.+|-+ ++|||.
T Consensus 128 -----------------------a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t-vki~d~ 183 (825)
T KOG0267|consen 128 -----------------------ASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT-VKIWDL 183 (825)
T ss_pred -----------------------ccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce-eeeecc
Confidence 12457888999999998999999999999999999999999999999876 899998
Q ss_pred CCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 416 MPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 416 ~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
. .|. .+.+| .+|. ..|+.+.|.|-.-.|+.||.|+|+++|+++.+.
T Consensus 184 ~-------agk------------~~~ef-~~~e-~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 184 T-------AGK------------LSKEF-KSHE-GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred c-------ccc------------ccccc-cccc-ccccccccCchhhhhccCCCCceeeeeccceeE
Confidence 4 332 23333 3443 469999999999999999999999999999664
No 109
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.33 E-value=2.3e-10 Score=120.95 Aligned_cols=238 Identities=18% Similarity=0.262 Sum_probs=161.5
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEE
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLV 141 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlav 141 (627)
.-.|.|+.|.+. .+.++...-+.-|+||.+....+ ..++-.|+++|+.+..-|+. .+++-
T Consensus 261 ~kki~~v~~~~~------~~~v~~aSad~~i~vws~~~~s~-~~~~~~h~~~V~~ls~h~tg-------------eYlls 320 (506)
T KOG0289|consen 261 TKKITSVKFHKD------LDTVITASADEIIRVWSVPLSSE-PTSSRPHEEPVTGLSLHPTG-------------EYLLS 320 (506)
T ss_pred ceEEEEEEeccc------hhheeecCCcceEEeeccccccC-ccccccccccceeeeeccCC-------------cEEEE
Confidence 345667776542 24567777788899999998764 45666789999999988765 33322
Q ss_pred EEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-C--eEEEEEecCc--EEEEEe
Q 046828 142 VACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-S--TVYMVRCSPR--IVAVGL 216 (627)
Q Consensus 142 v~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s--~V~sV~~s~~--~LaV~~ 216 (627)
.. .+++.-|.|.+++..+...... + .+.+.+|.|+ +++.+.
T Consensus 321 As----------------------------------~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt 366 (506)
T KOG0289|consen 321 AS----------------------------------NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT 366 (506)
T ss_pred ec----------------------------------CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC
Confidence 11 2367899999999998777764 3 5788999984 455554
Q ss_pred -CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCC
Q 046828 217 -AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSP 295 (627)
Q Consensus 217 -~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~ 295 (627)
++.|+|||+......-.+.+|..| +. -|+|+.
T Consensus 367 ~d~~vkiwdlks~~~~a~Fpght~~-------------vk-------~i~FsE--------------------------- 399 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQTNVAKFPGHTGP-------------VK-------AISFSE--------------------------- 399 (506)
T ss_pred CCceEEEEEcCCccccccCCCCCCc-------------ee-------EEEecc---------------------------
Confidence 568999999987766555555443 22 233332
Q ss_pred CCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC
Q 046828 296 SNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR 375 (627)
Q Consensus 296 s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~ 375 (627)
.|| | + +.+.+|+.|++||++..
T Consensus 400 --------------------------NGY------~----------------------L----at~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 400 --------------------------NGY------W----------------------L----ATAADDGSVKLWDLRKL 421 (506)
T ss_pred --------------------------Cce------E----------------------E----EEEecCCeEEEEEehhh
Confidence 122 1 0 02346778999999998
Q ss_pred eEEEEeccC-CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEE
Q 046828 376 SVISQFRAH-TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQD 454 (627)
Q Consensus 376 ~~l~~~~aH-~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~s 454 (627)
+...+|.-. ..+|.++.|+++|++|+.++.+ ++||-.... +. .|. .+.++ .-+ .+....
T Consensus 422 ~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~---l~Vy~~~k~-----~k------~W~----~~~~~-~~~-sg~st~ 481 (506)
T KOG0289|consen 422 KNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD---LQVYICKKK-----TK------SWT----EIKEL-ADH-SGLSTG 481 (506)
T ss_pred cccceeeccccccceeEEEcCCCCeEEeecce---eEEEEEecc-----cc------cce----eeehh-hhc-ccccce
Confidence 877777633 3479999999999999999665 566654311 11 111 12222 111 234688
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEc
Q 046828 455 ICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 455 IaFSpDg~~Las~S~dgTvhIw~i 478 (627)
+.|..+.++|+++|.|...+|+.+
T Consensus 482 v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 482 VRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeecccceEEeeccchhheEEeec
Confidence 999999999999999999999876
No 110
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.32 E-value=4.3e-11 Score=134.46 Aligned_cols=129 Identities=21% Similarity=0.347 Sum_probs=109.8
Q ss_pred CcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYG 255 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~ 255 (627)
++.++|||.++...+++++..+.+..+...+ .++|+++++ .|.++|+.|.+..+.+.+|.+. .+
T Consensus 514 ~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nr-------------it 580 (910)
T KOG1539|consen 514 DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNR-------------IT 580 (910)
T ss_pred cceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccc-------------ee
Confidence 4779999999999999999988888777766 677777766 7999999999988899999875 56
Q ss_pred eeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecc
Q 046828 256 PMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQD 333 (627)
Q Consensus 256 ~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~ 333 (627)
.++++| |||+.++
T Consensus 581 d~~FS~DgrWlisas----------------------------------------------------------------- 595 (910)
T KOG1539|consen 581 DMTFSPDGRWLISAS----------------------------------------------------------------- 595 (910)
T ss_pred eeEeCCCCcEEEEee-----------------------------------------------------------------
Confidence 677765 8888764
Q ss_pred ccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEE
Q 046828 334 FIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIF 413 (627)
Q Consensus 334 ~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vw 413 (627)
.|++|++||+.++.++-.|.- ..|+.+|.|||+|.+|||+..|+.-|.+|
T Consensus 596 -----------------------------mD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 596 -----------------------------MDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred -----------------------------cCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 468899999999988877763 57899999999999999999998889999
Q ss_pred eC
Q 046828 414 RI 415 (627)
Q Consensus 414 di 415 (627)
--
T Consensus 646 sN 647 (910)
T KOG1539|consen 646 SN 647 (910)
T ss_pred Ec
Confidence 64
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=6.6e-11 Score=117.34 Aligned_cols=263 Identities=13% Similarity=0.183 Sum_probs=170.2
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC--CceEEeeecCCceEEEEEe-eCCCCCCCCCCcCC
Q 046828 58 SHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT--NVSELVSRRDDPVTFLQMQ-PLPAKSDGQEGFRN 134 (627)
Q Consensus 58 ~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~--~~~ells~~dG~V~~v~~l-p~p~~~~~~D~f~~ 134 (627)
+..|+|.|..+-.|. .++++...+.|+.++|+.+.+++ ....-|-.|.|||--+.+. |. |
T Consensus 7 dt~H~D~IHda~lDy------ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk---------~-- 69 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDY------YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPK---------F-- 69 (299)
T ss_pred hhhhhhhhhHhhhhh------hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccc---------c--
Confidence 345677777776654 24889999999999999999877 3445556789999777664 32 1
Q ss_pred CCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe---cCCeEEEEEecC--
Q 046828 135 SHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR---FRSTVYMVRCSP-- 209 (627)
Q Consensus 135 ~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~---f~s~V~sV~~s~-- 209 (627)
..+||.+. .+++|.||--..|+.-+..+ +.+.|.+|++-|
T Consensus 70 -G~iLAScs----------------------------------YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waphe 114 (299)
T KOG1332|consen 70 -GTILASCS----------------------------------YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHE 114 (299)
T ss_pred -CcEeeEee----------------------------------cCceEEEEecCCCchhhhhhhhhhcccceeecccccc
Confidence 25666432 45889999988886544333 456999999987
Q ss_pred --cEEEEE-eCCeEEEEeCCCC-cee--EEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCC
Q 046828 210 --RIVAVG-LAAQIYCFDALTL-ESK--FSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQS 283 (627)
Q Consensus 210 --~~LaV~-~~~~I~i~D~~t~-e~~--~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~ 283 (627)
-+|+.+ .++.|.|++..+- .-. .....|+. +++.++. ++...
T Consensus 115 ygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-------------GvnsVsw-------apa~~------------ 162 (299)
T KOG1332|consen 115 YGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-------------GVNSVSW-------APASA------------ 162 (299)
T ss_pred cceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-------------ccceeee-------cCcCC------------
Confidence 467776 4668888876543 111 11112321 1333332 22100
Q ss_pred CCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCC
Q 046828 284 LTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDI 363 (627)
Q Consensus 284 ~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~ 363 (627)
| |.++ ++...+.+ -+| .+++.
T Consensus 163 ---~----------g~~~------------------~~~~~~~~------------------------krl----vSgGc 183 (299)
T KOG1332|consen 163 ---P----------GSLV------------------DQGPAAKV------------------------KRL----VSGGC 183 (299)
T ss_pred ---C----------cccc------------------ccCccccc------------------------cee----eccCC
Confidence 0 0000 00000000 012 24678
Q ss_pred CCeEEEEECCCCe--EEEEeccCCCCeEEEEECCCC----CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 364 AGMVVVKDIVSRS--VISQFRAHTSPISALCFDRSG----TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 364 dG~V~IwD~~s~~--~l~~~~aH~~~Is~laFspdG----~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
|..|+||+..+++ .-.+|.+|+.-|..+|+.|.- ..||++|.||+ +.||... .. .+ .|...
T Consensus 184 Dn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-viIwt~~-~e----~e------~wk~t- 250 (299)
T KOG1332|consen 184 DNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-VIIWTKD-EE----YE------PWKKT- 250 (299)
T ss_pred ccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-EEEEEec-Cc----cC------ccccc-
Confidence 9999999998863 344599999999999999984 57999999999 5799764 21 11 12111
Q ss_pred eEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 438 VHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
.+.+ . +..++.++||..|..||++..|+.|.+|.-+-.|
T Consensus 251 -ll~~----f-~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 251 -LLEE----F-PDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDG 289 (299)
T ss_pred -cccc----C-CcceEEEEEeccccEEEEecCCcEEEEEEeCCCC
Confidence 1222 2 2359999999999999999999999999876554
No 112
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.32 E-value=4.2e-11 Score=124.64 Aligned_cols=101 Identities=22% Similarity=0.310 Sum_probs=80.9
Q ss_pred CCCCCCeEEEEECCCC---eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 360 DTDIAGMVVVKDIVSR---SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~---~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
+++.||.|+|||++++ .++. .++|.+.|+.|.|+..-.+||+|+++|+ ++|||++... .++
T Consensus 275 ScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt-~~iwDLR~~~----~~~---------- 338 (440)
T KOG0302|consen 275 SCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLASGGDDGT-LSIWDLRQFK----SGQ---------- 338 (440)
T ss_pred eeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcceeeecCCCce-EEEEEhhhcc----CCC----------
Confidence 5678999999999988 3344 3899999999999999999999999998 8999997321 121
Q ss_pred eeEEEEEeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCC
Q 046828 437 HVHLYKLHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~ 480 (627)
.+..+.+ | .+.|++|.|+| +...||+++.|..|-|||+.-
T Consensus 339 --pVA~fk~-H-k~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 339 --PVATFKY-H-KAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred --cceeEEe-c-cCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 2333322 2 35699999998 667899999999999999964
No 113
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.32 E-value=1.6e-10 Score=119.91 Aligned_cols=175 Identities=16% Similarity=0.224 Sum_probs=137.0
Q ss_pred cEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccc
Q 046828 180 TAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYG 255 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~ 255 (627)
..-.||++.+|+...++. ++..|.++.||. .+||+| ++++|.||+..++.....+.. +..
T Consensus 86 D~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~--------------- 149 (399)
T KOG0296|consen 86 DLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVE--------------- 149 (399)
T ss_pred ceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec-ccC---------------
Confidence 568899999999999997 667999999997 788888 688999999999988777641 111
Q ss_pred eeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecccc
Q 046828 256 PMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFI 335 (627)
Q Consensus 256 ~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~ 335 (627)
-| .||-+-+...+
T Consensus 150 di----eWl~WHp~a~i--------------------------------------------------------------- 162 (399)
T KOG0296|consen 150 DI----EWLKWHPRAHI--------------------------------------------------------------- 162 (399)
T ss_pred ce----EEEEecccccE---------------------------------------------------------------
Confidence 01 36655431100
Q ss_pred CCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 336 PDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 336 p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
+ ..+..||.|.+|.+.++...+.|.+|..++++=.|.|||++++|+..||+ |++|+.
T Consensus 163 ------------------l----lAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt-i~~Wn~ 219 (399)
T KOG0296|consen 163 ------------------L----LAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT-IIVWNP 219 (399)
T ss_pred ------------------E----EeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce-EEEEec
Confidence 0 13578999999999998889999999999999999999999999999998 799998
Q ss_pred CCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 416 MPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 416 ~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
+ +|+ .++++. +...-.-.+++++.++..+..++.++.+++-+...
T Consensus 220 k-------tg~------------p~~~~~-~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s 264 (399)
T KOG0296|consen 220 K-------TGQ------------PLHKIT-QAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS 264 (399)
T ss_pred C-------CCc------------eeEEec-ccccCcCCccccccccceeEeccCCccEEEEcccc
Confidence 6 442 455442 22222367899999999999999999998877654
No 114
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.30 E-value=2.5e-11 Score=130.28 Aligned_cols=107 Identities=18% Similarity=0.311 Sum_probs=82.6
Q ss_pred CCCCCCeEEEEECCCC-eEEEEeccC-----CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCC
Q 046828 360 DTDIAGMVVVKDIVSR-SVISQFRAH-----TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDW 433 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~-~~l~~~~aH-----~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~ 433 (627)
.+++||+++|||+.+- +++..|+.- .-+++..+|+|||+++|+|..||. |.+|+.. ...
T Consensus 286 T~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~-~~~------------- 350 (641)
T KOG0772|consen 286 TCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKG-SRT------------- 350 (641)
T ss_pred EecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc-eeeeecC-Ccc-------------
Confidence 4679999999999764 445555532 346889999999999999999998 8999973 211
Q ss_pred CCceeEEEEEeecCCcC-cEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 434 TSSHVHLYKLHRGMTSA-VIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 434 ~~~~~~l~~l~rG~t~a-~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
+...+..+..|+.. .|.+|+||+||++|++=+.|+|++||+|..+...
T Consensus 351 ---v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 351 ---VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred ---cccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 01334444555543 4999999999999999999999999999876543
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=5.9e-10 Score=113.77 Aligned_cols=247 Identities=17% Similarity=0.117 Sum_probs=159.5
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 58 SHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 58 ~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
+...+|.|--+.|+. ....+|+...|+.+++||++... ..+.=.|++|+-.+.+.+.-
T Consensus 9 ~npP~d~IS~v~f~~------~~~~LLvssWDgslrlYdv~~~~--l~~~~~~~~plL~c~F~d~~-------------- 66 (323)
T KOG1036|consen 9 ENPPEDGISSVKFSP------SSSDLLVSSWDGSLRLYDVPANS--LKLKFKHGAPLLDCAFADES-------------- 66 (323)
T ss_pred CCCChhceeeEEEcC------cCCcEEEEeccCcEEEEeccchh--hhhheecCCceeeeeccCCc--------------
Confidence 345689999999973 22567778889999999999864 33334566776555544310
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC---cEEEE
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP---RIVAV 214 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~---~~LaV 214 (627)
- ++++ + .++.|+.||+.+++.-.-..+...|.+|..++ .+|+.
T Consensus 67 ~-~~~G-------~--------------------------~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsg 112 (323)
T KOG1036|consen 67 T-IVTG-------G--------------------------LDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISG 112 (323)
T ss_pred e-EEEe-------c--------------------------cCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEc
Confidence 1 2221 1 24789999999999887778888999999985 45555
Q ss_pred EeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCC
Q 046828 215 GLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTS 294 (627)
Q Consensus 215 ~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s 294 (627)
+-+.+|++||.+.-....++.. +.+ +..+.++..-|.
T Consensus 113 sWD~~ik~wD~R~~~~~~~~d~-~kk-------------Vy~~~v~g~~Lv----------------------------- 149 (323)
T KOG1036|consen 113 SWDKTIKFWDPRNKVVVGTFDQ-GKK-------------VYCMDVSGNRLV----------------------------- 149 (323)
T ss_pred ccCccEEEEecccccccccccc-Cce-------------EEEEeccCCEEE-----------------------------
Confidence 5688999999986222211110 000 112222111111
Q ss_pred CCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 295 PSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 295 ~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
-+..+-.|.+||+.+
T Consensus 150 -----------------------------------------------------------------Vg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 150 -----------------------------------------------------------------VGTSDRKVLIYDLRN 164 (323)
T ss_pred -----------------------------------------------------------------EeecCceEEEEEccc
Confidence 123566899999998
Q ss_pred CeEEEEecc--CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCc---
Q 046828 375 RSVISQFRA--HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTS--- 449 (627)
Q Consensus 375 ~~~l~~~~a--H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~--- 449 (627)
.....+.+. -.-.+.||++-|++.=.|.+|.+|++ -|=.+.+.... .+..-.++.+|-...
T Consensus 165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRV-avE~~d~s~~~-------------~skkyaFkCHr~~~~~~~ 230 (323)
T KOG1036|consen 165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRV-AVEYFDDSEEA-------------QSKKYAFKCHRLSEKDTE 230 (323)
T ss_pred ccchhhhccccceeEEEEEEEecCCCceEEEeecceE-EEEccCCchHH-------------hhhceeEEeeecccCCce
Confidence 765444332 23468999999999999999999984 44333322110 001123333332211
Q ss_pred --CcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 450 --AVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 450 --a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
..|.+|+|+|--+.||+++.||-|-+|++....
T Consensus 231 ~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 231 IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred EEEEeceeEeccccceEEecCCCceEEEccCcchh
Confidence 138999999999999999999999999987643
No 116
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.29 E-value=1.1e-10 Score=124.14 Aligned_cols=219 Identities=16% Similarity=0.202 Sum_probs=152.4
Q ss_pred CCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeecc
Q 046828 79 SFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVG 158 (627)
Q Consensus 79 ~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~ 158 (627)
+++-+++.|.++-|||||+++.. ....+..|.|.|..+.|--.+. -| ...
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~e-hv~~~~ghr~~V~~L~fr~gt~------------~l-ys~---------------- 262 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLE-HVKVFKGHRGAVSSLAFRKGTS------------EL-YSA---------------- 262 (479)
T ss_pred CCcEEEecCCCceEEEecCcccc-hhhcccccccceeeeeeecCcc------------ce-eee----------------
Confidence 34777888889999999999855 4556778888888777754432 22 221
Q ss_pred CcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEE-eCCeEEEEeCCCCceeEEE
Q 046828 159 RDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVG-LAAQIYCFDALTLESKFSV 234 (627)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~-~~~~I~i~D~~t~e~~~tl 234 (627)
..+++|++|++..-.+|.++. +.+.|.+|.... |.+.|+ -|.++.+|++..-. ...+
T Consensus 263 ------------------s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlif 323 (479)
T KOG0299|consen 263 ------------------SADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIF 323 (479)
T ss_pred ------------------ecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-eeee
Confidence 134789999999999999986 667999999864 677777 56689999984311 1122
Q ss_pred EcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhc
Q 046828 235 LTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAA 314 (627)
Q Consensus 235 ~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~ 314 (627)
.++.. +...+||-.+
T Consensus 324 rg~~~--------------------sidcv~~In~--------------------------------------------- 338 (479)
T KOG0299|consen 324 RGGEG--------------------SIDCVAFIND--------------------------------------------- 338 (479)
T ss_pred eCCCC--------------------CeeeEEEecc---------------------------------------------
Confidence 22100 0122333221
Q ss_pred ceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEec-cCC---C----
Q 046828 315 GLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFR-AHT---S---- 386 (627)
Q Consensus 315 gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~-aH~---~---- 386 (627)
.|..+++.+|.|.+|++.+++++.+.+ ||. .
T Consensus 339 -----------------------------------------~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~ 377 (479)
T KOG0299|consen 339 -----------------------------------------EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPV 377 (479)
T ss_pred -----------------------------------------cceeeccCCceEEEeeecccCceeEeeccccccCCcccc
Confidence 112246789999999999999988876 662 2
Q ss_pred ----CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCC
Q 046828 387 ----PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQ 462 (627)
Q Consensus 387 ----~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~ 462 (627)
.|++|+..|...++|++|-+|- ||+|.+.+.. .....++.+. -..-|++|+|+++|+
T Consensus 378 ~~~~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g~---------------r~i~~l~~ls---~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 378 NGNFWITSLAVIPGSDLLASGSWSGC-VRLWKIEDGL---------------RAINLLYSLS---LVGFVNSLAFSNSGK 438 (479)
T ss_pred ccccceeeeEecccCceEEecCCCCc-eEEEEecCCc---------------cccceeeecc---cccEEEEEEEccCCC
Confidence 6899999999999999999998 7999997321 0112455552 123499999999999
Q ss_pred EEEEEeCCC
Q 046828 463 WIAIVSSRG 471 (627)
Q Consensus 463 ~Las~S~dg 471 (627)
+|.++-.+.
T Consensus 439 ~ivagiGkE 447 (479)
T KOG0299|consen 439 RIVAGIGKE 447 (479)
T ss_pred EEEEecccc
Confidence 888874443
No 117
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.29 E-value=1.1e-10 Score=118.41 Aligned_cols=110 Identities=17% Similarity=0.250 Sum_probs=81.6
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCE-EEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC-ceeEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTL-LVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS-SHVHL 440 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~l-LaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~-~~~~l 440 (627)
.+-.|++.|++++..-+.+.+|...|-++.|+|...+ |||||.||+ ||+|||... +|. +.--|... .....
T Consensus 166 r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~-irlWDiRra-----sgc-f~~lD~hn~k~~p~ 238 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA-IRLWDIRRA-----SGC-FRVLDQHNTKRPPI 238 (397)
T ss_pred CCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce-EEEEEeecc-----cce-eEEeecccCccCcc
Confidence 3457999999999999999999999999999998765 899999998 899999732 121 11001111 10011
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.+- +-....+|..+||+.|+++|++.+.|..+++|+...
T Consensus 239 ~~~-n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 239 LKT-NTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred ccc-cccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 111 112235699999999999999999999999999764
No 118
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.28 E-value=5.6e-11 Score=127.12 Aligned_cols=224 Identities=17% Similarity=0.259 Sum_probs=153.7
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeee-----cCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceee
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSR-----RDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHV 155 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~-----~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~ 155 (627)
++|++.| .++++|||+...++ +--++. +|.-+|.+.++|+. |.|| |+ |.
T Consensus 432 rhVyTgG-kgcVKVWdis~pg~-k~PvsqLdcl~rdnyiRSckL~pdg------------rtLi--vG-------Ge--- 485 (705)
T KOG0639|consen 432 RHVYTGG-KGCVKVWDISQPGN-KSPVSQLDCLNRDNYIRSCKLLPDG------------RTLI--VG-------GE--- 485 (705)
T ss_pred ceeEecC-CCeEEEeeccCCCC-CCccccccccCcccceeeeEecCCC------------ceEE--ec-------cc---
Confidence 7788777 78999999987653 333332 34556666666543 3443 33 21
Q ss_pred eccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC---eEEEEEecC--cEEEEE-eCCeEEEEeCCCCc
Q 046828 156 HVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS---TVYMVRCSP--RIVAVG-LAAQIYCFDALTLE 229 (627)
Q Consensus 156 ~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s---~V~sV~~s~--~~LaV~-~~~~I~i~D~~t~e 229 (627)
-.+|.||||.+.+.--..+..+ ..|++++|+ ++...+ .++.|.|||+.+-.
T Consensus 486 -----------------------astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 486 -----------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred -----------------------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce
Confidence 1569999999877654445544 568889998 444444 57789999999988
Q ss_pred eeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhh
Q 046828 230 SKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESS 309 (627)
Q Consensus 230 ~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~ 309 (627)
.++.+.+|+.- ...|.+ .
T Consensus 543 ~VrqfqGhtDG-------------ascIdi-------s------------------------------------------ 560 (705)
T KOG0639|consen 543 LVRQFQGHTDG-------------ASCIDI-------S------------------------------------------ 560 (705)
T ss_pred eeecccCCCCC-------------ceeEEe-------c------------------------------------------
Confidence 88888888752 112322 1
Q ss_pred hhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeE
Q 046828 310 KQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPIS 389 (627)
Q Consensus 310 k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is 389 (627)
+.|++-| .++-|.+||.||+..++++.+.. ..+.|.
T Consensus 561 -----------~dGtklW--------------------------------TGGlDntvRcWDlregrqlqqhd-F~SQIf 596 (705)
T KOG0639|consen 561 -----------KDGTKLW--------------------------------TGGLDNTVRCWDLREGRQLQQHD-FSSQIF 596 (705)
T ss_pred -----------CCCceee--------------------------------cCCCccceeehhhhhhhhhhhhh-hhhhhe
Confidence 1122222 24678999999999887543322 257799
Q ss_pred EEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeC
Q 046828 390 ALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSS 469 (627)
Q Consensus 390 ~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~ 469 (627)
+|...|+|..||.+-+.+. +-|-.+. +. ..|+|.. +...|.++.|++.|+|+++.+.
T Consensus 597 SLg~cP~~dWlavGMens~-vevlh~s--------kp------------~kyqlhl--heScVLSlKFa~cGkwfvStGk 653 (705)
T KOG0639|consen 597 SLGYCPTGDWLAVGMENSN-VEVLHTS--------KP------------EKYQLHL--HESCVLSLKFAYCGKWFVSTGK 653 (705)
T ss_pred ecccCCCccceeeecccCc-EEEEecC--------Cc------------cceeecc--cccEEEEEEecccCceeeecCc
Confidence 9999999999999999986 3444331 21 4455532 3345999999999999999999
Q ss_pred CCeEEEEEcCCCCC
Q 046828 470 RGTCHIFVLTPFGG 483 (627)
Q Consensus 470 dgTvhIw~i~~~gg 483 (627)
|.-+-.|.. |||.
T Consensus 654 DnlLnawrt-PyGa 666 (705)
T KOG0639|consen 654 DNLLNAWRT-PYGA 666 (705)
T ss_pred hhhhhhccC-cccc
Confidence 999999986 4553
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.28 E-value=2.5e-10 Score=116.76 Aligned_cols=219 Identities=16% Similarity=0.171 Sum_probs=142.3
Q ss_pred CCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
++-+...|.|..++|||+....+...|++ |.|.+.++++.+.-. +.-||. +.
T Consensus 53 ~~~~aSGssDetI~IYDm~k~~qlg~ll~-HagsitaL~F~~~~S----------~shLlS-~s---------------- 104 (362)
T KOG0294|consen 53 GPYVASGSSDETIHIYDMRKRKQLGILLS-HAGSITALKFYPPLS----------KSHLLS-GS---------------- 104 (362)
T ss_pred ceeEeccCCCCcEEEEeccchhhhcceec-cccceEEEEecCCcc----------hhheee-ec----------------
Confidence 46777888899999999999777555554 799999999875421 113432 11
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC-cE--EEEEeCCeEEEEeCCCCceeEEEE
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP-RI--VAVGLAAQIYCFDALTLESKFSVL 235 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~-~~--LaV~~~~~I~i~D~~t~e~~~tl~ 235 (627)
.++.|.+|+...=+++++++ +...|..|++.| .. |.|+.+..++.||+-+|+.-+.+.
T Consensus 105 ------------------dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~ 166 (362)
T KOG0294|consen 105 ------------------DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN 166 (362)
T ss_pred ------------------CCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec
Confidence 13669999999999999999 455899999987 33 456778889999999998877764
Q ss_pred cCCCCCCCCCCCcCcccccce-eeE--cCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhh
Q 046828 236 TYPVPHFGGQGTSGVNIGYGP-MAV--GPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQL 312 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~-iAl--~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l 312 (627)
-...++... .++ -+. |.+ ..+..+|-.... ++..+...+.
T Consensus 167 L~~~at~v~-w~~-----~Gd~F~v~~~~~i~i~q~d~A-------------------------------~v~~~i~~~~ 209 (362)
T KOG0294|consen 167 LKNKATLVS-WSP-----QGDHFVVSGRNKIDIYQLDNA-------------------------------SVFREIENPK 209 (362)
T ss_pred cCCcceeeE-EcC-----CCCEEEEEeccEEEEEecccH-------------------------------hHhhhhhccc
Confidence 322221000 000 000 111 112333322111 1111111110
Q ss_pred hcceeecCCcceeEEeeeeccccCCCCCCCccCCCcccc-CcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEE
Q 046828 313 AAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKA-GRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISAL 391 (627)
Q Consensus 313 ~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~-g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~l 391 (627)
+.+.-.| -. +.+ ..+..++.|++||..+..++..|.||...|-.+
T Consensus 210 ------------r~l~~~~------------------l~~~~L----~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i 255 (362)
T KOG0294|consen 210 ------------RILCATF------------------LDGSEL----LVGGDNEWISLKDTDSDTPLTEFLAHENRVKDI 255 (362)
T ss_pred ------------cceeeee------------------cCCceE----EEecCCceEEEeccCCCccceeeecchhheeee
Confidence 0000000 00 111 135678999999999999999999999999998
Q ss_pred EE--CCCCCEEEEEeCCCCEEEEEeCC
Q 046828 392 CF--DRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 392 aF--spdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
.| +|++.+|+|+|.||. |+|||+.
T Consensus 256 ~~~~~~~~~~lvTaSSDG~-I~vWd~~ 281 (362)
T KOG0294|consen 256 ASYTNPEHEYLVTASSDGF-IKVWDID 281 (362)
T ss_pred EEEecCCceEEEEeccCce-EEEEEcc
Confidence 83 788999999999997 8999996
No 120
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=6.8e-12 Score=138.05 Aligned_cols=107 Identities=34% Similarity=0.602 Sum_probs=94.3
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEE
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDI 455 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sI 455 (627)
-.++++-+|..++..+.|+|+++++.+++..++.+++|.++|... +. .-....|+|++.||.|.++|..+
T Consensus 483 ~vvqh~vahs~~gv~~Ef~~~~~l~lSad~~e~ef~~f~V~Ph~~----ws------slaav~hly~l~rG~TsaKv~~~ 552 (788)
T KOG2109|consen 483 GVVQHYVAHSDPGVYIEFSPDQRLVLSADANENEFNIFLVMPHAT----WS------SLAAVQHLYKLNRGSTSAKVVST 552 (788)
T ss_pred ceeEEEeeccCccceeeecccccceecccccccccceEEeecccc----cH------HHhhhhhhhhccCCCccceeeee
Confidence 467788899999999999999999999999999889999998752 21 12233589999999999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccc
Q 046828 456 CFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNS 492 (627)
Q Consensus 456 aFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s 492 (627)
+|+-|++|+|.....+|.|||.+.+|++....++|..
T Consensus 553 afs~dsrw~A~~t~~~TthVfk~hpYgg~aeqrth~~ 589 (788)
T KOG2109|consen 553 AFSEDSRWLAITTNHATTHVFKVHPYGGKAEQRTHGD 589 (788)
T ss_pred EeecchhhhhhhhcCCceeeeeeccccccccceecCC
Confidence 9999999999999999999999999999998888854
No 121
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=3.6e-10 Score=115.48 Aligned_cols=253 Identities=21% Similarity=0.319 Sum_probs=162.7
Q ss_pred EEEEEeeccCCCCCCCCeEEEEeccCc-EEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEE
Q 046828 65 VLWSSFDKLELSPSSFKHVLLLGYSNG-FQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVA 143 (627)
Q Consensus 65 V~wa~Fd~l~~~~~~~~~vl~~Gy~~G-~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~ 143 (627)
-..+.|..+ ...|.+|+.+| +-|||..+.. +..+++.|--||.++.+.+.- |-| +. .
T Consensus 26 a~~~~Fs~~-------G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dg------------r~L-lt-s 83 (405)
T KOG1273|consen 26 AECCQFSRW-------GDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDG------------RKL-LT-S 83 (405)
T ss_pred cceEEeccC-------cceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCC------------CEe-ee-e
Confidence 346888764 34788888776 9999999866 678899999999999987643 233 21 1
Q ss_pred ccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--c-EEEEE-eCCe
Q 046828 144 CDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--R-IVAVG-LAAQ 219 (627)
Q Consensus 144 ~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~-~LaV~-~~~~ 219 (627)
+.+..|.+||+..|.+++.+.|.++|+.+.+.+ + ..++. ....
T Consensus 84 ---------------------------------S~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~s 130 (405)
T KOG1273|consen 84 ---------------------------------SRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEES 130 (405)
T ss_pred ---------------------------------cCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCC
Confidence 124779999999999999999999999999987 2 22332 3333
Q ss_pred EEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCc
Q 046828 220 IYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGN 299 (627)
Q Consensus 220 I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs 299 (627)
-++-++.+ ..++++. -.++. .+. .+++.+
T Consensus 131 p~vi~~s~--~~h~~Lp-----------------------------~d~d~-------dln------------~sas~~- 159 (405)
T KOG1273|consen 131 PVVIDFSD--PKHSVLP-----------------------------KDDDG-------DLN------------SSASHG- 159 (405)
T ss_pred cEEEEecC--Cceeecc-----------------------------CCCcc-------ccc------------cccccc-
Confidence 34444333 2222221 11100 000 000000
Q ss_pred ccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEE
Q 046828 300 LMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVIS 379 (627)
Q Consensus 300 ~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~ 379 (627)
.|. +.|. +...+...|.+.|+|..+.++++
T Consensus 160 ------------------------------~fd-----------------r~g~---yIitGtsKGkllv~~a~t~e~va 189 (405)
T KOG1273|consen 160 ------------------------------VFD-----------------RRGK---YIITGTSKGKLLVYDAETLECVA 189 (405)
T ss_pred ------------------------------ccc-----------------CCCC---EEEEecCcceEEEEecchheeee
Confidence 000 0010 00134567999999999999999
Q ss_pred EeccCC-CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEc
Q 046828 380 QFRAHT-SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFS 458 (627)
Q Consensus 380 ~~~aH~-~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFS 458 (627)
.|+-.+ ..|..|-|+..|+.|++-+.|. +||+|++..--..|+.| .....++++.=.+.....+++||
T Consensus 190 s~rits~~~IK~I~~s~~g~~liiNtsDR-vIR~ye~~di~~~~r~~----------e~e~~~K~qDvVNk~~Wk~ccfs 258 (405)
T KOG1273|consen 190 SFRITSVQAIKQIIVSRKGRFLIINTSDR-VIRTYEISDIDDEGRDG----------EVEPEHKLQDVVNKLQWKKCCFS 258 (405)
T ss_pred eeeechheeeeEEEEeccCcEEEEecCCc-eEEEEehhhhcccCccC----------CcChhHHHHHHHhhhhhhheeec
Confidence 999766 8899999999999999999996 59999985211111111 11223344333333446889999
Q ss_pred cCCCEEEEEeCCC-eEEEEEcCCCCCee
Q 046828 459 HYSQWIAIVSSRG-TCHIFVLTPFGGET 485 (627)
Q Consensus 459 pDg~~Las~S~dg-TvhIw~i~~~gg~~ 485 (627)
.||.|++.+|.+. .+.||.-.. |..+
T Consensus 259 ~dgeYv~a~s~~aHaLYIWE~~~-GsLV 285 (405)
T KOG1273|consen 259 GDGEYVCAGSARAHALYIWEKSI-GSLV 285 (405)
T ss_pred CCccEEEeccccceeEEEEecCC-ccee
Confidence 9999999888654 588998654 4444
No 122
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.27 E-value=2.4e-10 Score=121.59 Aligned_cols=177 Identities=14% Similarity=0.180 Sum_probs=130.7
Q ss_pred CcEEEEEECCCCceEEEEe-cCCeEEEEEecC---cEEEEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 179 PTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP---RIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~---~~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
++.|.|||.+|.+.+++++ ++..|.++.|.. ++++.+.+..|++|++..+..+-++-+|+..
T Consensus 223 d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~-------------- 288 (479)
T KOG0299|consen 223 DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG-------------- 288 (479)
T ss_pred CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc--------------
Confidence 3779999999999999988 566999999965 6777777889999999998888788777542
Q ss_pred ceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccc
Q 046828 255 GPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDF 334 (627)
Q Consensus 255 ~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~ 334 (627)
.++++- | + .+|+ +
T Consensus 289 -v~~Ida--L--~--------reR~-----------------------------------------------v------- 301 (479)
T KOG0299|consen 289 -VLGIDA--L--S--------RERC-----------------------------------------------V------- 301 (479)
T ss_pred -eeeech--h--c--------ccce-----------------------------------------------E-------
Confidence 122210 0 0 0000 0
Q ss_pred cCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEe
Q 046828 335 IPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFR 414 (627)
Q Consensus 335 ~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwd 414 (627)
+.++.|.++++|++.. .....|.+|...|-|++|-.+ ..++|||++|. |-+|+
T Consensus 302 ------------------------tVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs 354 (479)
T KOG0299|consen 302 ------------------------TVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWS 354 (479)
T ss_pred ------------------------EeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEee
Confidence 0235789999999954 445578999999999999865 47889999998 89999
Q ss_pred CCCCCCCCCCCCCccccCCCCceeEEEEEeecCCc--------CcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 415 IMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTS--------AVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 415 i~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~--------a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
+.... + ..++++--|..+ -+|++|+-.|.+..+|+||.+|.|+||.+++
T Consensus 355 ~~KKk-------p----------lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 355 LLKKK-------P----------LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred ecccC-------c----------eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 85211 0 122222222222 2699999999999999999999999999986
No 123
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1.9e-11 Score=141.47 Aligned_cols=247 Identities=19% Similarity=0.221 Sum_probs=168.8
Q ss_pred EEeeccCCCCC--CCCeEEEEeccCc-EEEEecCCC--CCceEEe---eecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 68 SSFDKLELSPS--SFKHVLLLGYSNG-FQVLDVEDA--TNVSELV---SRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 68 a~Fd~l~~~~~--~~~~vl~~Gy~~G-~qVWdv~~~--~~~~ell---s~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
-+|.+|.|+.. ...-|+++|.++| +-+||.... ++..+++ +.|.|+|+.+.|.+.- +.+|
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q------------~nlL 132 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQ------------GNLL 132 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccC------------Ccee
Confidence 56777766532 2234788787665 999999872 4344555 4688999888876532 2476
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEE---ecCCeEEEEEecC---cEEE
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVL---RFRSTVYMVRCSP---RIVA 213 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL---~f~s~V~sV~~s~---~~La 213 (627)
|- | + .++.|.||||..-+.-.++ .+.+.|..+++|+ ++||
T Consensus 133 AS--G------a--------------------------~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILA 178 (1049)
T KOG0307|consen 133 AS--G------A--------------------------DDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILA 178 (1049)
T ss_pred ec--c------C--------------------------CCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhh
Confidence 53 1 1 1256999999875554444 3677999999998 7899
Q ss_pred EEeCC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 214 VGLAA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 214 V~~~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
++... ++.|||++.-+.+..+..++.- +.+ .-|++-++..+
T Consensus 179 S~s~sg~~~iWDlr~~~pii~ls~~~~~----------------~~~--S~l~WhP~~aT-------------------- 220 (1049)
T KOG0307|consen 179 SGSPSGRAVIWDLRKKKPIIKLSDTPGR----------------MHC--SVLAWHPDHAT-------------------- 220 (1049)
T ss_pred ccCCCCCceeccccCCCcccccccCCCc----------------cce--eeeeeCCCCce--------------------
Confidence 88755 8999999876655444433221 000 12333332110
Q ss_pred CCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI 372 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~ 372 (627)
+++ + ....+..-.|.+||+
T Consensus 221 ------------------ql~-------------~------------------------------As~dd~~PviqlWDl 239 (1049)
T KOG0307|consen 221 ------------------QLL-------------V------------------------------ASGDDSAPVIQLWDL 239 (1049)
T ss_pred ------------------eee-------------e------------------------------ecCCCCCceeEeecc
Confidence 000 0 001234457999998
Q ss_pred CCC-eEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC
Q 046828 373 VSR-SVISQFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA 450 (627)
Q Consensus 373 ~s~-~~l~~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a 450 (627)
+.- .++..++.|...|.+|.|.+.+ ++|+|+..|++ |.+|+.. +| .-++++-++ ..
T Consensus 240 R~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~-------tg------------Evl~~~p~~--~n 297 (1049)
T KOG0307|consen 240 RFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPN-------TG------------EVLGELPAQ--GN 297 (1049)
T ss_pred cccCCchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCC-------Cc------------eEeeecCCC--Cc
Confidence 764 4678889999999999999987 99999999999 6899975 44 267777552 23
Q ss_pred cEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCC
Q 046828 451 VIQDICFSH-YSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 451 ~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+.++.|.| +-..+|+++-||+|-||.+...
T Consensus 298 W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 298 WCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 699999999 4458999999999999999754
No 124
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.27 E-value=7.3e-10 Score=113.66 Aligned_cols=130 Identities=19% Similarity=0.232 Sum_probs=95.0
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH 444 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~ 444 (627)
..+-||.-..++++..+-+|...|+.|+|.+||..|.+++.+-..|-+|||... + ..+|+|.
T Consensus 230 q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~------~------------~pv~~L~ 291 (406)
T KOG2919|consen 230 QRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS------R------------DPVYALE 291 (406)
T ss_pred ceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc------c------------chhhhhh
Confidence 344555555677888888999999999999999999999998778999999622 1 2577776
Q ss_pred e--cCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeec-ccccccccCCCCCCCccCCCCCCCcc
Q 046828 445 R--GMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVL-QIQNSHVDRPTLSPVLSVPWWSSPSF 513 (627)
Q Consensus 445 r--G~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~-~~h~s~v~~~~~~p~~~~~~~~~~~~ 513 (627)
| +.|+.+|+ ...-|+++|||+|+.||.|++|+++.++..+.. ..|..-+.+..+-|..++.+..+-.+
T Consensus 292 rhv~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 292 RHVGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred hhccCccceEE-EecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence 5 33333332 344689999999999999999999998875533 33444455556677777666655544
No 125
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.27 E-value=8.8e-11 Score=123.34 Aligned_cols=185 Identities=11% Similarity=0.125 Sum_probs=129.3
Q ss_pred CCeEEEEeccCcEEEEecCCCCCceEEeeecCCce-EEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeecc
Q 046828 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPV-TFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVG 158 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V-~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~ 158 (627)
+.++++++-|+++-.||++- .++-.+..-.+ ++..+..++ |+ ..+++|+
T Consensus 324 g~~~V~Gs~dr~i~~wdlDg----n~~~~W~gvr~~~v~dlait~------Dg-----k~vl~v~--------------- 373 (519)
T KOG0293|consen 324 GFRFVTGSPDRTIIMWDLDG----NILGNWEGVRDPKVHDLAITY------DG-----KYVLLVT--------------- 373 (519)
T ss_pred CceeEecCCCCcEEEecCCc----chhhcccccccceeEEEEEcC------CC-----cEEEEEe---------------
Confidence 46788888899999999985 23444433221 233333333 22 3344443
Q ss_pred CcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEE
Q 046828 159 RDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVL 235 (627)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~ 235 (627)
.+..+++|+.++...+..+.-+.+|.++.+|. +++.|.+.. +|++||+...+.+....
T Consensus 374 -------------------~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~ 434 (519)
T KOG0293|consen 374 -------------------VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF 434 (519)
T ss_pred -------------------cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh
Confidence 12569999999998888888888999999986 677777655 79999999766655555
Q ss_pred cCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcc
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAG 315 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~g 315 (627)
+|... -+-+. -.|++.+ +.
T Consensus 435 Ghkq~---------------~fiIr---SCFgg~~---------------------------~~---------------- 453 (519)
T KOG0293|consen 435 GHKQG---------------HFIIR---SCFGGGN---------------------------DK---------------- 453 (519)
T ss_pred ccccc---------------ceEEE---eccCCCC---------------------------cc----------------
Confidence 55321 01110 0111100 00
Q ss_pred eeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECC
Q 046828 316 LINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDR 395 (627)
Q Consensus 316 l~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFsp 395 (627)
| .+++++|+.|+||+..+++++..+.+|...|+|++++|
T Consensus 454 --------------------------------------f---iaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP 492 (519)
T KOG0293|consen 454 --------------------------------------F---IASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP 492 (519)
T ss_pred --------------------------------------e---EEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC
Confidence 0 02568999999999999999999999999999999999
Q ss_pred C-CCEEEEEeCCCCEEEEEeCC
Q 046828 396 S-GTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 396 d-G~lLaTaS~dGt~I~Vwdi~ 416 (627)
. -.++|+||+||| ||||-..
T Consensus 493 ~~p~m~ASasDDgt-IRIWg~~ 513 (519)
T KOG0293|consen 493 ADPEMFASASDDGT-IRIWGPS 513 (519)
T ss_pred CCHHHhhccCCCCe-EEEecCC
Confidence 5 578999999999 8999864
No 126
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.26 E-value=4.8e-11 Score=127.52 Aligned_cols=192 Identities=24% Similarity=0.331 Sum_probs=138.5
Q ss_pred CcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 179 PTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
.++|+|||++...+.+.|+ +.+.|..|..|- .+||++. .+.|.|..+.|...-.++ ++++-+
T Consensus 100 ~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f-~~~sgq------------- 165 (673)
T KOG4378|consen 100 SGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF-TIDSGQ------------- 165 (673)
T ss_pred CceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce-ecCCCC-------------
Confidence 3789999999777777777 557999999875 6787664 568999999887654333 222210
Q ss_pred ceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccc
Q 046828 255 GPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDF 334 (627)
Q Consensus 255 ~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~ 334 (627)
++ |.|-|...... +
T Consensus 166 ---sv--Rll~ys~skr~---------------------------------------l---------------------- 179 (673)
T KOG4378|consen 166 ---SV--RLLRYSPSKRF---------------------------------------L---------------------- 179 (673)
T ss_pred ---eE--EEeecccccce---------------------------------------e----------------------
Confidence 11 77888764311 0
Q ss_pred cCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEe-ccCCCCeEEEEECCCC-CEEEEEeCCCCEEEE
Q 046828 335 IPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQF-RAHTSPISALCFDRSG-TLLVTASIHGNNINI 412 (627)
Q Consensus 335 ~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~-~aH~~~Is~laFspdG-~lLaTaS~dGt~I~V 412 (627)
...++.+|.|.+||+....++.++ .+|..|...|||+|.. .+|++.+-|.. |++
T Consensus 180 -----------------------L~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~ 235 (673)
T KOG4378|consen 180 -----------------------LSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INI 235 (673)
T ss_pred -----------------------eEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEE
Confidence 013468999999999998877765 4999999999999975 56788888876 899
Q ss_pred EeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCee-eccccc
Q 046828 413 FRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGET-VLQIQN 491 (627)
Q Consensus 413 wdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~-~~~~h~ 491 (627)
||+. ... ..-.+- ..+....++|+++|.+|++|+.+|.+..||+.....++ .+..|.
T Consensus 236 yD~~-s~~------------------s~~~l~---y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~ 293 (673)
T KOG4378|consen 236 YDIR-SQA------------------STDRLT---YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHD 293 (673)
T ss_pred eecc-ccc------------------ccceee---ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecc
Confidence 9985 210 111111 12457899999999999999999999999998776655 345676
Q ss_pred ccccC
Q 046828 492 SHVDR 496 (627)
Q Consensus 492 s~v~~ 496 (627)
..|..
T Consensus 294 ~sVt~ 298 (673)
T KOG4378|consen 294 ASVTR 298 (673)
T ss_pred cceeE
Confidence 65544
No 127
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=2e-10 Score=117.47 Aligned_cols=106 Identities=15% Similarity=0.277 Sum_probs=86.7
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
+++.|..|.|||++ ++.+.++......-...+.||+|++||.+.-.-. ++||.+--. . .|+. .+..+
T Consensus 204 sas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpD-VkVwE~~f~--k--dG~f-------qev~r 270 (420)
T KOG2096|consen 204 SASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPD-VKVWEPIFT--K--DGTF-------QEVKR 270 (420)
T ss_pred EecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCC-ceEEEEEec--c--Ccch-------hhhhh
Confidence 35678899999999 8999999988888888899999999999998876 799986411 1 3431 12246
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.++| .||..| |...+||++++.+++.|.||+.+||+++-
T Consensus 271 vf~L-kGH~sa-V~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 271 VFSL-KGHQSA-VLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred hhee-ccchhh-eeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 7777 688765 99999999999999999999999999873
No 128
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.24 E-value=2.4e-10 Score=116.91 Aligned_cols=129 Identities=12% Similarity=0.178 Sum_probs=91.1
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcc---------c
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQ---------T 430 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~---------~ 430 (627)
++..||.|.|||...-..+..|++|...|+.|+..|+|++-.+.+.|+. +|.|++. +|.... .
T Consensus 102 S~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~-lr~WNLV-------~Gr~a~v~~L~~~at~ 173 (362)
T KOG0294|consen 102 SGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQV-LRTWNLV-------RGRVAFVLNLKNKATL 173 (362)
T ss_pred eecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCce-eeeehhh-------cCccceeeccCCccee
Confidence 4678999999999999999999999999999999999999999999986 8999997 232110 0
Q ss_pred cCC--CCc--------eeEEEEEee------cCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccc
Q 046828 431 YDW--TSS--------HVHLYKLHR------GMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHV 494 (627)
Q Consensus 431 ~~~--~~~--------~~~l~~l~r------G~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v 494 (627)
-.| .+. ...+|++.. -..+.+|.++.|- ++..|++|.++++|.+||-+.......+.+|..++
T Consensus 174 v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RV 252 (362)
T KOG0294|consen 174 VSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRV 252 (362)
T ss_pred eEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhhe
Confidence 001 111 012222210 0112234555553 55678888999999999988766666778888777
Q ss_pred cCC
Q 046828 495 DRP 497 (627)
Q Consensus 495 ~~~ 497 (627)
+..
T Consensus 253 K~i 255 (362)
T KOG0294|consen 253 KDI 255 (362)
T ss_pred eee
Confidence 654
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=1.5e-09 Score=123.54 Aligned_cols=235 Identities=15% Similarity=0.177 Sum_probs=161.5
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
..+.|.|+.-+. .++++...++.+++|...... ...++.+-.-|.+.+.+.- .+.++|
T Consensus 55 ~g~~v~~ia~~s--------~~f~~~s~~~tv~~y~fps~~-~~~iL~Rftlp~r~~~v~g-------------~g~~ia 112 (933)
T KOG1274|consen 55 SGELVSSIACYS--------NHFLTGSEQNTVLRYKFPSGE-EDTILARFTLPIRDLAVSG-------------SGKMIA 112 (933)
T ss_pred cCceeEEEeecc--------cceEEeeccceEEEeeCCCCC-ccceeeeeeccceEEEEec-------------CCcEEE
Confidence 456677766442 357777778889999999855 3557777667777766542 235554
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEE-e
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVG-L 216 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~-~ 216 (627)
. + ..+..|++-++.+...+..++ +..+|..|.+++ .+|||+ .
T Consensus 113 a-g---------------------------------sdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~ 158 (933)
T KOG1274|consen 113 A-G---------------------------------SDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC 158 (933)
T ss_pred e-e---------------------------------cCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec
Confidence 3 1 124779999999999888887 567999999998 688877 5
Q ss_pred CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEc-C-ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCC
Q 046828 217 AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVG-P-RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTS 294 (627)
Q Consensus 217 ~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~-~-r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s 294 (627)
+++|+|||+.++.+.+++.+-.--. -+-.. . .-+|+.++.
T Consensus 159 dG~v~iw~~~~~~~~~tl~~v~k~n--------------~~~~s~i~~~~aW~Pk~------------------------ 200 (933)
T KOG1274|consen 159 DGKVQIWDLQDGILSKTLTGVDKDN--------------EFILSRICTRLAWHPKG------------------------ 200 (933)
T ss_pred CceEEEEEcccchhhhhcccCCccc--------------cccccceeeeeeecCCC------------------------
Confidence 7899999999999988886532100 00000 0 012222210
Q ss_pred CCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 295 PSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 295 ~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
|.++ ....++.|++|+..+
T Consensus 201 ---------------------------------------------------------g~la----~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 201 ---------------------------------------------------------GTLA----VPPVDNTVKVYSRKG 219 (933)
T ss_pred ---------------------------------------------------------CeEE----eeccCCeEEEEccCC
Confidence 1111 224678999999998
Q ss_pred CeEEEEecc--CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcE
Q 046828 375 RSVISQFRA--HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVI 452 (627)
Q Consensus 375 ~~~l~~~~a--H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I 452 (627)
......++. |.+.++.++|+|.|++||+++.+|. |-|||++.+ ..++++ ..|
T Consensus 220 we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~-I~vWnv~t~--------------------~~~~~~-----~~V 273 (933)
T KOG1274|consen 220 WELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQ-ILVWNVDTH--------------------ERHEFK-----RAV 273 (933)
T ss_pred ceeheeecccccccceEEEEEcCCCcEEeeeccCCc-EEEEecccc--------------------hhcccc-----cee
Confidence 887777763 4455999999999999999999998 799998621 112221 249
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEE
Q 046828 453 QDICFSHYSQWIAIVSSRGTCHIF 476 (627)
Q Consensus 453 ~sIaFSpDg~~Las~S~dgTvhIw 476 (627)
.+++|-|++.-|-.....|+.-+|
T Consensus 274 c~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 274 CCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EEEecCCCCCeeEEEeeccccccC
Confidence 999999998887776666665544
No 130
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.4e-09 Score=108.59 Aligned_cols=99 Identities=11% Similarity=0.205 Sum_probs=82.2
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
..|.+|+.-++.+.+.+..|.+|...|..|+.+|-+..+.++|.|.+ ||+||++ ...+ ..+.
T Consensus 77 k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~t-vrLWDlR-~~~c----------------qg~l 138 (311)
T KOG1446|consen 77 KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKT-VRLWDLR-VKKC----------------QGLL 138 (311)
T ss_pred CCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCe-EEeeEec-CCCC----------------ceEE
Confidence 46788999999999999999999999999999999999999999998 8999997 2211 1222
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
.+. + -..+||.|+|-++|++...+.|+|||+..++..
T Consensus 139 ~~~-~-----~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkg 175 (311)
T KOG1446|consen 139 NLS-G-----RPIAAFDPEGLIFALANGSELIKLYDLRSFDKG 175 (311)
T ss_pred ecC-C-----CcceeECCCCcEEEEecCCCeEEEEEecccCCC
Confidence 221 1 134799999999999999999999999998654
No 131
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.22 E-value=3.7e-10 Score=115.30 Aligned_cols=253 Identities=15% Similarity=0.157 Sum_probs=155.6
Q ss_pred ECCCCce----EEEEe-cCCeEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccccee
Q 046828 186 SLRSHNY----VHVLR-FRSTVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPM 257 (627)
Q Consensus 186 dl~t~~~----V~tL~-f~s~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~i 257 (627)
+.+++.. ++++. ++.-|+.|+.-. .++..+.++ +..||.+++++++.+..+|... ++.+
T Consensus 130 sFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GS-------------VNsi 196 (481)
T KOG0300|consen 130 SFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGS-------------VNSI 196 (481)
T ss_pred eecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccc-------------eeeE
Confidence 3455553 34444 456899988753 677777666 6899999999999998887542 6677
Q ss_pred eEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhh---hhcc-eeecCCcceeEEeeee
Q 046828 258 AVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQ---LAAG-LINLGDMGYKTLSRYY 331 (627)
Q Consensus 258 Al~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~---l~~g-l~~lg~~g~~~~s~y~ 331 (627)
.+.+ .+++.++.+.+.++|.- ..+.-.|..+.+.+-.+.+. .+.+.+ ...+ ...-|+.=...+.++.
T Consensus 197 kfh~s~~L~lTaSGD~taHIW~~-av~~~vP~~~a~~~hSsEeE------~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt 269 (481)
T KOG0300|consen 197 KFHNSGLLLLTASGDETAHIWKA-AVNWEVPSNNAPSDHSSEEE------EEHSDEHNRDTDSSEKSDGHTIRVPLMRLT 269 (481)
T ss_pred EeccccceEEEccCCcchHHHHH-hhcCcCCCCCCCCCCCchhh------hhcccccccccccccccCCceeeeeeeeee
Confidence 7765 56777777777766632 12222221111111111110 000000 0000 0000111011111110
Q ss_pred ccccCCCCCCCccCCCccccC-cccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEE
Q 046828 332 QDFIPDGSSSPVSSNSSWKAG-RNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNI 410 (627)
Q Consensus 332 ~~~~p~g~~~~~s~~~~~~~g-~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I 410 (627)
|....+ .-..|-.| .-. ..++-|.+..+||+++++++..+.+|.+.++..+-.|.-++++|+|.|-| +
T Consensus 270 ------gH~~vV-~a~dWL~gg~Q~---vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtT-F 338 (481)
T KOG0300|consen 270 ------GHRAVV-SACDWLAGGQQM---VTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTT-F 338 (481)
T ss_pred ------ccccce-EehhhhcCccee---eeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCce-e
Confidence 111111 11345432 111 24678899999999999999999999999999999999999999999976 8
Q ss_pred EEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC-CCeeeccc
Q 046828 411 NIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF-GGETVLQI 489 (627)
Q Consensus 411 ~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~-gg~~~~~~ 489 (627)
|+||..+.. +-...+.||+. .|.+..|.-|.+ ++++|+|.||+||++..- ....++++
T Consensus 339 RLWDFReaI-------------------~sV~VFQGHtd-tVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRt 397 (481)
T KOG0300|consen 339 RLWDFREAI-------------------QSVAVFQGHTD-TVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRT 397 (481)
T ss_pred Eeccchhhc-------------------ceeeeeccccc-ceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeec
Confidence 999987332 23345579875 599999999864 679999999999999643 33344444
Q ss_pred c
Q 046828 490 Q 490 (627)
Q Consensus 490 h 490 (627)
.
T Consensus 398 d 398 (481)
T KOG0300|consen 398 D 398 (481)
T ss_pred C
Confidence 3
No 132
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.22 E-value=1.3e-10 Score=124.43 Aligned_cols=218 Identities=17% Similarity=0.267 Sum_probs=149.4
Q ss_pred CCCeEEEEeccCcEEEEecCCCCCceEEeeec--CCce-EEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceee
Q 046828 79 SFKHVLLLGYSNGFQVLDVEDATNVSELVSRR--DDPV-TFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHV 155 (627)
Q Consensus 79 ~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~--dG~V-~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~ 155 (627)
+++.+++.|+...+-|||+.... ..+-... .++. ..+.+.|.- .+ ++.+|
T Consensus 476 dgrtLivGGeastlsiWDLAapT--prikaeltssapaCyALa~spDa-------------kv-cFscc----------- 528 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPT--PRIKAELTSSAPACYALAISPDA-------------KV-CFSCC----------- 528 (705)
T ss_pred CCceEEeccccceeeeeeccCCC--cchhhhcCCcchhhhhhhcCCcc-------------ce-eeeec-----------
Confidence 46899999999999999998765 2222111 1232 223333321 22 33332
Q ss_pred eccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecC---cEEEEEeCCeEEEEeCCCCcee
Q 046828 156 HVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP---RIVAVGLAAQIYCFDALTLESK 231 (627)
Q Consensus 156 ~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~---~~LaV~~~~~I~i~D~~t~e~~ 231 (627)
+++.|.||||+....|+.|+. ..-+.+|.+++ ++-.-|++..|++||+++++.+
T Consensus 529 ----------------------sdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql 586 (705)
T KOG0639|consen 529 ----------------------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL 586 (705)
T ss_pred ----------------------cCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh
Confidence 335699999999999999995 45889999995 5556678999999999988754
Q ss_pred EEEEcCCCCCCCCCCCcCcccccceeeEc----CceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhh
Q 046828 232 FSVLTYPVPHFGGQGTSGVNIGYGPMAVG----PRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVE 307 (627)
Q Consensus 232 ~tl~~~p~~~~~~~g~~~~~~~~~~iAl~----~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~ 307 (627)
.. |.-. ..+|+|+ ..|||.+=
T Consensus 587 qq---hdF~-------------SQIfSLg~cP~~dWlavGM--------------------------------------- 611 (705)
T KOG0639|consen 587 QQ---HDFS-------------SQIFSLGYCPTGDWLAVGM--------------------------------------- 611 (705)
T ss_pred hh---hhhh-------------hhheecccCCCccceeeec---------------------------------------
Confidence 32 2111 1234443 25666652
Q ss_pred hhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCC
Q 046828 308 SSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSP 387 (627)
Q Consensus 308 ~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~ 387 (627)
+.+.|.|-.. ++....++.-|.+-
T Consensus 612 -------------------------------------------------------ens~vevlh~-skp~kyqlhlheSc 635 (705)
T KOG0639|consen 612 -------------------------------------------------------ENSNVEVLHT-SKPEKYQLHLHESC 635 (705)
T ss_pred -------------------------------------------------------ccCcEEEEec-CCccceeecccccE
Confidence 1222222222 22344567778999
Q ss_pred eEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEE
Q 046828 388 ISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIV 467 (627)
Q Consensus 388 Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~ 467 (627)
|.+|.|.+-|+++++...|.- ++.|++ |. |. .+++... ...|.++..|-|.++|++|
T Consensus 636 VLSlKFa~cGkwfvStGkDnl-Lnawrt-Py------Ga------------siFqskE---~SsVlsCDIS~ddkyIVTG 692 (705)
T KOG0639|consen 636 VLSLKFAYCGKWFVSTGKDNL-LNAWRT-PY------GA------------SIFQSKE---SSSVLSCDISFDDKYIVTG 692 (705)
T ss_pred EEEEEecccCceeeecCchhh-hhhccC-cc------cc------------ceeeccc---cCcceeeeeccCceEEEec
Confidence 999999999999999999964 799997 54 32 4665542 3459999999999999999
Q ss_pred eCCCeEEEEEcC
Q 046828 468 SSRGTCHIFVLT 479 (627)
Q Consensus 468 S~dgTvhIw~i~ 479 (627)
|.|...-||.+.
T Consensus 693 SGdkkATVYeV~ 704 (705)
T KOG0639|consen 693 SGDKKATVYEVI 704 (705)
T ss_pred CCCcceEEEEEe
Confidence 999999998863
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=1.7e-09 Score=119.69 Aligned_cols=189 Identities=20% Similarity=0.258 Sum_probs=128.1
Q ss_pred CcEEEEEECCCCceE-EEEecC--CeEEEEEecC--cEEEEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccc
Q 046828 179 PTAVRFYSLRSHNYV-HVLRFR--STVYMVRCSP--RIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V-~tL~f~--s~V~sV~~s~--~~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~ 253 (627)
++.|.||+++.+=+. .+|..+ ..|-++++.+ |++.+++++.|.-||+.+++.++.+.....+
T Consensus 46 ~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~------------- 112 (691)
T KOG2048|consen 46 DGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGA------------- 112 (691)
T ss_pred CCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcc-------------
Confidence 467999999986443 233332 4899999984 7778889999999999999988877543222
Q ss_pred cceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeee
Q 046828 254 YGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYY 331 (627)
Q Consensus 254 ~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~ 331 (627)
...+|+.| .-||
T Consensus 113 IWsiai~p~~~~l~------------------------------------------------------------------ 126 (691)
T KOG2048|consen 113 IWSIAINPENTILA------------------------------------------------------------------ 126 (691)
T ss_pred eeEEEeCCccceEE------------------------------------------------------------------
Confidence 22333322 0111
Q ss_pred ccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEE--EEeccCCCCeEEEEECCCCCEEEEEeCCCCE
Q 046828 332 QDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVI--SQFRAHTSPISALCFDRSGTLLVTASIHGNN 409 (627)
Q Consensus 332 ~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l--~~~~aH~~~Is~laFspdG~lLaTaS~dGt~ 409 (627)
-+.+||.+..++...++.. ..|..-++.|-+|+|+|+|+.||+|+.||.
T Consensus 127 ----------------------------IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~- 177 (691)
T KOG2048|consen 127 ----------------------------IGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV- 177 (691)
T ss_pred ----------------------------eecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce-
Confidence 1235665555565555432 223344688999999999999999999995
Q ss_pred EEEEeCCCCCCCCCCCCCccccCCCCceeE-----EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 410 INIFRIMPSSSKGRSGSASQTYDWTSSHVH-----LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 410 I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~-----l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
|+|||.. . +.. .+ +-++.++ ...-|+++.|=.|+ .||+|.+.|||.+||-......
T Consensus 178 Iriwd~~-~------~~t----------~~~~~~~~d~l~k~-~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLi 238 (691)
T KOG2048|consen 178 IRIWDVK-S------GQT----------LHIITMQLDRLSKR-EPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLI 238 (691)
T ss_pred EEEEEcC-C------Cce----------EEEeeecccccccC-CceEEEEEEEeecC-cEEEecCCceEEEEcccCcchh
Confidence 8999986 2 220 13 1222222 23348999998776 6789999999999998877666
Q ss_pred eecccccccc
Q 046828 485 TVLQIQNSHV 494 (627)
Q Consensus 485 ~~~~~h~s~v 494 (627)
....-|+++|
T Consensus 239 qS~~~h~adV 248 (691)
T KOG2048|consen 239 QSHSCHDADV 248 (691)
T ss_pred hhhhhhhcce
Confidence 6666676654
No 134
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.19 E-value=1.4e-10 Score=129.56 Aligned_cols=220 Identities=17% Similarity=0.228 Sum_probs=143.4
Q ss_pred CeEEEEeccC-cEEEEecCCCC--CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeec
Q 046828 81 KHVLLLGYSN-GFQVLDVEDAT--NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHV 157 (627)
Q Consensus 81 ~~vl~~Gy~~-G~qVWdv~~~~--~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~ 157 (627)
.+++..+..+ -+-|||+.... ....++..|.-.|..+.+.+. .|-|++ . |
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~t-------------ep~ili-S-------G------ 152 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHST-------------EPNILI-S-------G------ 152 (839)
T ss_pred hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccC-------------CccEEE-e-------c------
Confidence 3455555555 59999999733 223466778777777776543 266554 2 1
Q ss_pred cCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC-eEEEEEecC---cEEEEEeC-CeEEEEeCCCCce-e
Q 046828 158 GRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP---RIVAVGLA-AQIYCFDALTLES-K 231 (627)
Q Consensus 158 ~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~---~~LaV~~~-~~I~i~D~~t~e~-~ 231 (627)
+ | +++|++||+|..+-+.++...+ .|++|+|++ ...+++.+ +.+.+||++..++ .
T Consensus 153 ---------S---Q-------Dg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~ 213 (839)
T KOG0269|consen 153 ---------S---Q-------DGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE 213 (839)
T ss_pred ---------C---C-------CceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH
Confidence 1 1 4899999999998888877665 899999997 56666654 4799999986543 3
Q ss_pred EEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhh
Q 046828 232 FSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESS 309 (627)
Q Consensus 232 ~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~ 309 (627)
+.+..|..| +-.+.+.| .|||.
T Consensus 214 ~k~~AH~Gp-------------V~c~nwhPnr~~lAT------------------------------------------- 237 (839)
T KOG0269|consen 214 KKLTAHNGP-------------VLCLNWHPNREWLAT------------------------------------------- 237 (839)
T ss_pred HHhhcccCc-------------eEEEeecCCCceeee-------------------------------------------
Confidence 344444333 11122222 24443
Q ss_pred hhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeE--EEEeccCCCC
Q 046828 310 KQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSV--ISQFRAHTSP 387 (627)
Q Consensus 310 k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~--l~~~~aH~~~ 387 (627)
++.|++|+|||..+.+. +.++. ...|
T Consensus 238 ---------------------------------------------------GGRDK~vkiWd~t~~~~~~~~tIn-Tiap 265 (839)
T KOG0269|consen 238 ---------------------------------------------------GGRDKMVKIWDMTDSRAKPKHTIN-TIAP 265 (839)
T ss_pred ---------------------------------------------------cCCCccEEEEeccCCCccceeEEe-ecce
Confidence 34789999999986543 33333 2579
Q ss_pred eEEEEECCCCC-EEEEEeC-CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEcc-CCCEE
Q 046828 388 ISALCFDRSGT-LLVTASI-HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSH-YSQWI 464 (627)
Q Consensus 388 Is~laFspdG~-lLaTaS~-dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSp-Dg~~L 464 (627)
|.+|+|-|.-+ .|||+|. .-+.|+|||+.. +. ..|....-|+. .+..|+|-. |-..|
T Consensus 266 v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR-PY------------------IP~~t~~eH~~-~vt~i~W~~~d~~~l 325 (839)
T KOG0269|consen 266 VGRVKWRPARSYHLATCSMVVDTSVHVWDVRR-PY------------------IPYATFLEHTD-SVTGIAWDSGDRINL 325 (839)
T ss_pred eeeeeeccCccchhhhhhccccceEEEEeecc-cc------------------ccceeeeccCc-cccceeccCCCceee
Confidence 99999999865 5777664 336799999961 10 11222223333 488999955 77888
Q ss_pred EEEeCCCeEE
Q 046828 465 AIVSSRGTCH 474 (627)
Q Consensus 465 as~S~dgTvh 474 (627)
.+++.||||-
T Consensus 326 ~s~sKD~tv~ 335 (839)
T KOG0269|consen 326 WSCSKDGTVL 335 (839)
T ss_pred EeecCccHHH
Confidence 9999999974
No 135
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=4.1e-09 Score=116.41 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=54.1
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe
Q 046828 389 SALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS 468 (627)
Q Consensus 389 s~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S 468 (627)
...+|+|||+.|+.++.++ +.+||+. +|. ...+..+. ...+++|+|||++|+.++
T Consensus 336 ~~~~~SpDG~~ia~~~~~~--i~~~Dl~-------~g~-------------~~~lt~~~---~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 336 YSAQISADGKTLVMINGDN--VVKQDLT-------SGS-------------TEVLSSTF---LDESPSISPNGIMIIYSS 390 (429)
T ss_pred CCccCCCCCCEEEEEcCCC--EEEEECC-------CCC-------------eEEecCCC---CCCCceECCCCCEEEEEE
Confidence 4578999999999988764 4568875 231 11222221 235688999999999999
Q ss_pred CCCeEEEEEcCCCCC--eeecccccccc
Q 046828 469 SRGTCHIFVLTPFGG--ETVLQIQNSHV 494 (627)
Q Consensus 469 ~dgTvhIw~i~~~gg--~~~~~~h~s~v 494 (627)
.+|.+.+|.+....| ...+..|...+
T Consensus 391 ~~g~~~~l~~~~~~G~~~~~l~~~~g~~ 418 (429)
T PRK01742 391 TQGLGKVLQLVSADGRFKARLPGSDGQV 418 (429)
T ss_pred cCCCceEEEEEECCCCceEEccCCCCCC
Confidence 999999888754322 23454554433
No 136
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=2.2e-08 Score=98.43 Aligned_cols=98 Identities=20% Similarity=0.285 Sum_probs=80.1
Q ss_pred CCCCCCeEEEEECCCCeEEEEecc--C-----CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRA--H-----TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYD 432 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~a--H-----~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~ 432 (627)
++++|.+|+.||+.-..++.++.. | .+.|.+++.+|+|++||++-.|.. ..+|||. .|
T Consensus 199 sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-c~lydir-------g~------- 263 (350)
T KOG0641|consen 199 SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-CMLYDIR-------GG------- 263 (350)
T ss_pred ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-eEEEEee-------CC-------
Confidence 467899999999988777776652 2 367999999999999999999976 7899996 22
Q ss_pred CCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 433 WTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 433 ~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
+.+.++.. +.+.|.++.|||...|+.++|.|..|++=++.
T Consensus 264 -----r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 264 -----RMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred -----ceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 24554432 34679999999999999999999999998875
No 137
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.17 E-value=5.5e-10 Score=123.66 Aligned_cols=202 Identities=15% Similarity=0.206 Sum_probs=135.9
Q ss_pred CcEEEEEECCCCceEEEEecCC---eEEE-EEec--C-cEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRS---TVYM-VRCS--P-RIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGV 250 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s---~V~s-V~~s--~-~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~ 250 (627)
+++++||+-+..+++.+..|.. .|.. +.+- . -+|+++ .|..|.+|...+.+.++++.+|..-
T Consensus 34 d~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn---------- 103 (745)
T KOG0301|consen 34 DGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN---------- 103 (745)
T ss_pred CCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccc----------
Confidence 4789999998888877655443 2222 3332 2 345555 5668999999999999999999642
Q ss_pred ccccceeeEc--CceEEEcCCCCCcCCCCccC----CCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcce
Q 046828 251 NIGYGPMAVG--PRWLAYASNNPLLPNTGRLS----PQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGY 324 (627)
Q Consensus 251 ~~~~~~iAl~--~r~LAy~~~~~~v~~~gr~~----~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~ 324 (627)
+..++.+ ++ |-.++-+.++..|-... .|.|+.
T Consensus 104 ---VC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~a-------------------------------------- 141 (745)
T KOG0301|consen 104 ---VCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGHTA-------------------------------------- 141 (745)
T ss_pred ---eeeeecCCcCc-eEecccccceEEecchhhhcccCCcch--------------------------------------
Confidence 2223322 12 34444444443332110 111111
Q ss_pred eEEeeeeccccCCCCCCCccCCCccccCccc-ccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEE
Q 046828 325 KTLSRYYQDFIPDGSSSPVSSNSSWKAGRNA-SHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTA 403 (627)
Q Consensus 325 ~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~-~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTa 403 (627)
+-|..-.++ ....+++.|.+|++|.- ++.+.+|.+|+.-|..|++=+++. ++++
T Consensus 142 ----------------------sVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flSc 196 (745)
T KOG0301|consen 142 ----------------------SVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSC 196 (745)
T ss_pred ----------------------heeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEee
Confidence 112111111 00124678999999976 678899999999999999998875 5689
Q ss_pred eCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 404 SIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 404 S~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
+.||. |+.|++. |. .+++. -||++ -|++|+..++++.+++++.|+|++||+...
T Consensus 197 sNDg~-Ir~w~~~--------ge------------~l~~~-~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~e 250 (745)
T KOG0301|consen 197 SNDGS-IRLWDLD--------GE------------VLLEM-HGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKDE 250 (745)
T ss_pred cCCce-EEEEecc--------Cc------------eeeee-eccce-EEEEEEecCCCCeEEEecCCceEEEeecCc
Confidence 99997 8999984 32 56665 57775 499999999999999999999999999874
No 138
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.17 E-value=1.3e-08 Score=109.49 Aligned_cols=268 Identities=16% Similarity=0.138 Sum_probs=162.3
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
+|.-|+.+.|.+ .+ .|+..-.++.+-||+.....-.+... .|+|.|.++.|+-+- .||
T Consensus 245 ekk~Vl~v~F~e--ng-----dviTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~G-------------tll- 302 (626)
T KOG2106|consen 245 EKKFVLCVTFLE--NG-----DVITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDG-------------TLL- 302 (626)
T ss_pred cceEEEEEEEcC--CC-----CEEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCc-------------cEe-
Confidence 457899999964 23 47777777779999998766556666 899999998887542 232
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC---CeEEEEEecCcEEEEEeC
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR---STVYMVRCSPRIVAVGLA 217 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~---s~V~sV~~s~~~LaV~~~ 217 (627)
+ +| -+++|..|| ..-+.++.++.+ .+|+.|+=.+--|.||..
T Consensus 303 --S------Gg--------------------------KDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTt 347 (626)
T KOG2106|consen 303 --S------GG--------------------------KDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTT 347 (626)
T ss_pred --e------cC--------------------------ccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeec
Confidence 1 12 248899999 333444555544 477777766522555543
Q ss_pred CeEEEE-eCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCC
Q 046828 218 AQIYCF-DALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTS 294 (627)
Q Consensus 218 ~~I~i~-D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s 294 (627)
..-.++ .++++-. .+..+|... ..-+|+.| ..++.++.++.+.+|..-.+
T Consensus 348 rN~iL~Gt~~~~f~-~~v~gh~de-------------lwgla~hps~~q~~T~gqdk~v~lW~~~k~------------- 400 (626)
T KOG2106|consen 348 RNFILQGTLENGFT-LTVQGHGDE-------------LWGLATHPSKNQLLTCGQDKHVRLWNDHKL------------- 400 (626)
T ss_pred cceEEEeeecCCce-EEEEecccc-------------eeeEEcCCChhheeeccCcceEEEccCCce-------------
Confidence 322222 2222211 122233221 12244443 46777777776666521000
Q ss_pred CCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 295 PSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 295 ~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
+-++.+ ++.. -|.+..|. |.+ +.+...|.--|.|.++
T Consensus 401 ------------~wt~~~-------~d~~------~~~~fhps--------------g~v----a~Gt~~G~w~V~d~e~ 437 (626)
T KOG2106|consen 401 ------------EWTKII-------EDPA------ECADFHPS--------------GVV----AVGTATGRWFVLDTET 437 (626)
T ss_pred ------------eEEEEe-------cCce------eEeeccCc--------------ceE----EEeeccceEEEEeccc
Confidence 000000 0000 01111111 111 2345678888999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEE
Q 046828 375 RSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQD 454 (627)
Q Consensus 375 ~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~s 454 (627)
.. +.+++...+++++++|+|||.+||.||.|+. |.||.+.. +| +.|...+-.+.+.|..
T Consensus 438 ~~-lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~-iyiy~Vs~------~g-------------~~y~r~~k~~gs~ith 496 (626)
T KOG2106|consen 438 QD-LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNH-IYIYRVSA------NG-------------RKYSRVGKCSGSPITH 496 (626)
T ss_pred ce-eEEEEecCCceEEEEEcCCCCEEEEecCCCe-EEEEEECC------CC-------------cEEEEeeeecCceeEE
Confidence 54 4455544899999999999999999999998 89999862 23 2222222222256999
Q ss_pred EEEccCCCEEEEEeCCCeEEEE
Q 046828 455 ICFSHYSQWIAIVSSRGTCHIF 476 (627)
Q Consensus 455 IaFSpDg~~Las~S~dgTvhIw 476 (627)
+.||+|+++|.+-|-|--+-.|
T Consensus 497 LDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 497 LDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred eeecCCCceEEeccCceEEEEE
Confidence 9999999999999999999999
No 139
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.16 E-value=1.5e-07 Score=96.99 Aligned_cols=250 Identities=20% Similarity=0.284 Sum_probs=162.7
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.+.+.|.-..|+. ....++..+.++.+.+||..... .+..+...+...+..+... .+.. ..
T Consensus 63 ~~~~~i~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~~ 124 (466)
T COG2319 63 GHEDSITSIAFSP------DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDG-----------NS 124 (466)
T ss_pred eccceEEEEEECC------CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCc-----------ce
Confidence 3445555566653 22556667779999999999865 3333333232233333332 3211 21
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCC-CceEEEEec-CCeEEEEEecC--cEEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRS-HNYVHVLRF-RSTVYMVRCSP--RIVAV 214 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t-~~~V~tL~f-~s~V~sV~~s~--~~LaV 214 (627)
+++.. ...++.+++||..+ ...+..+.. ...|..+.+++ +.+++
T Consensus 125 ~~~~~--------------------------------~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 172 (466)
T COG2319 125 ILLAS--------------------------------SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLAS 172 (466)
T ss_pred EEecc--------------------------------CCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEe
Confidence 12111 01246799999998 777777774 46899999987 45666
Q ss_pred Ee--CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 215 GL--AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 215 ~~--~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
+. ++.+++||+.+.+.+..+.+|..+ + ..+++.+....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------v-------~~~~~~~~~~~-------------------- 212 (466)
T COG2319 173 GSSLDGTIKLWDLRTGKPLSTLAGHTDP-------------V-------SSLAFSPDGGL-------------------- 212 (466)
T ss_pred cCCCCCceEEEEcCCCceEEeeccCCCc-------------e-------EEEEEcCCcce--------------------
Confidence 64 678999999987777666654322 1 12333321100
Q ss_pred CCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI 372 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~ 372 (627)
.+ .....++.|++||.
T Consensus 213 ---------------------------------~~-------------------------------~~~~~d~~i~~wd~ 228 (466)
T COG2319 213 ---------------------------------LI-------------------------------ASGSSDGTIRLWDL 228 (466)
T ss_pred ---------------------------------EE-------------------------------EEecCCCcEEEEEC
Confidence 00 01247889999999
Q ss_pred CCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCc
Q 046828 373 VSRSVIS-QFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAV 451 (627)
Q Consensus 373 ~s~~~l~-~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~ 451 (627)
..+..+. .+..|...+ ...|+|++.++++++.++. +++|++... . ..+..+ .++ ...
T Consensus 229 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~-------~-----------~~~~~~-~~~-~~~ 286 (466)
T COG2319 229 STGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSS-------S-----------SLLRTL-SGH-SSS 286 (466)
T ss_pred CCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCC-------C-----------cEEEEE-ecC-Ccc
Confidence 9888877 699998885 4489999999999999998 899998511 1 123333 444 345
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCee
Q 046828 452 IQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGET 485 (627)
Q Consensus 452 I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~ 485 (627)
|.++.|+|++..+++++.|+++++|++.......
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence 9999999999999999999999999877654333
No 140
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.16 E-value=2.6e-10 Score=118.27 Aligned_cols=216 Identities=17% Similarity=0.207 Sum_probs=135.7
Q ss_pred CcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC-cEEEEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccc
Q 046828 176 AMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP-RIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 176 ~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~-~~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~ 253 (627)
...++.|+||||.+.+++.+++ +.+.|..|.+.. .++.+|.+.+|+.|-+.- ..++++.+...- -|
T Consensus 85 Gs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~-------~g---- 152 (433)
T KOG0268|consen 85 GSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILGKSVY-------LG---- 152 (433)
T ss_pred cccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC-Ccceeeeccccc-------cc----
Confidence 3457889999999999999999 455999999987 666677777899997654 456666653211 01
Q ss_pred cceeeEc--CceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeee
Q 046828 254 YGPMAVG--PRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYY 331 (627)
Q Consensus 254 ~~~iAl~--~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~ 331 (627)
+.-. ....|.++.+ +.+|.- +..+| . +.+ ..|+.+++..
T Consensus 153 ---Idh~~~~~~FaTcGe~--i~IWD~---~R~~P-v-------------------------~sm----swG~Dti~sv- 193 (433)
T KOG0268|consen 153 ---IDHHRKNSVFATCGEQ--IDIWDE---QRDNP-V-------------------------SSM----SWGADSISSV- 193 (433)
T ss_pred ---cccccccccccccCce--eeeccc---ccCCc-c-------------------------cee----ecCCCceeEE-
Confidence 1110 1123333322 222211 11111 0 000 0111111100
Q ss_pred ccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEE
Q 046828 332 QDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNIN 411 (627)
Q Consensus 332 ~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~ 411 (627)
...| . -+...+.+..|+.|.|||+....++..+.- +..-+.|+|+|.+--+++|++|-. +.
T Consensus 194 -kfNp------v----------ETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~n-lY 254 (433)
T KOG0268|consen 194 -KFNP------V----------ETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHN-LY 254 (433)
T ss_pred -ecCC------C----------cchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecccccc-ce
Confidence 0000 0 001123566899999999998876554332 233477999999888999999954 89
Q ss_pred EEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 412 IFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 412 Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.||+. .-+ +....++||.+| |.+++|||.|+-++++|-|.||+||.++..
T Consensus 255 ~~DmR-~l~------------------~p~~v~~dhvsA-V~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 255 TYDMR-NLS------------------RPLNVHKDHVSA-VMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred ehhhh-hhc------------------ccchhhccccee-EEEeccCCCcchhccccccceEEEeecCCC
Confidence 99985 211 223345788776 999999999999999999999999998753
No 141
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.15 E-value=4.4e-08 Score=103.87 Aligned_cols=107 Identities=7% Similarity=0.080 Sum_probs=69.0
Q ss_pred CCCeEEEEECCCCeEEE-------EeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 363 IAGMVVVKDIVSRSVIS-------QFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~-------~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
.++.|.|||+.+...+. .+.. ......++|+|||++|+++.+....|.+|++.+. ++.
T Consensus 146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-----~~~--------- 210 (330)
T PRK11028 146 KEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-----HGE--------- 210 (330)
T ss_pred CCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-----CCC---------
Confidence 56789999997643221 1222 2335679999999999999884445899999621 111
Q ss_pred ceeEEEEEeec---CC-cCcEEEEEEccCCCEEEEEeC-CCeEEEEEcCCCCCee
Q 046828 436 SHVHLYKLHRG---MT-SAVIQDICFSHYSQWIAIVSS-RGTCHIFVLTPFGGET 485 (627)
Q Consensus 436 ~~~~l~~l~rG---~t-~a~I~sIaFSpDg~~Las~S~-dgTvhIw~i~~~gg~~ 485 (627)
...+.++... .. ......|.|+||+++|+++.. +++|.+|+++..++..
T Consensus 211 -~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~ 264 (330)
T PRK11028 211 -IECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL 264 (330)
T ss_pred -EEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE
Confidence 0122222110 00 011346999999999999854 7899999998765543
No 142
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.14 E-value=3.1e-09 Score=112.80 Aligned_cols=101 Identities=20% Similarity=0.215 Sum_probs=76.1
Q ss_pred CCCCCeEEEEECCCC-eEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 361 TDIAGMVVVKDIVSR-SVISQFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
+..||.|+-+|+++. +++.++++|..+|++|++++.- .+|+|+|.++. +++|++.-. ++ ...+.
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~-----~~--------~~v~~ 413 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVD-----SP--------KSVKE 413 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCC-----CC--------ccccc
Confidence 357999999999876 8999999999999999999864 47999999987 799998521 11 11112
Q ss_pred EEEEEeecCCcCcEEEEEEccCC-CEEEEEeCCCeEEEEEcCCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYS-QWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg-~~Las~S~dgTvhIw~i~~~ 481 (627)
|-.++ .+..|.++.|+- -+||.++.++-++||++...
T Consensus 414 ~~~~~------~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 414 HSFKL------GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ccccc------cceeecccCCCcceEEEecCccceEEEeecccC
Confidence 33333 225777777754 57888999999999999764
No 143
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.13 E-value=1.2e-08 Score=113.36 Aligned_cols=95 Identities=19% Similarity=0.213 Sum_probs=74.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEE
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIA 465 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~La 465 (627)
..+..++.+|+-++++|+..|.. ||||+|. +|. ..+.++-.|++. .....+...|.|-|||
T Consensus 597 tTlYDm~Vdp~~k~v~t~cQDrn-irif~i~-------sgK----------q~k~FKgs~~~e-G~lIKv~lDPSgiY~a 657 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVCQDRN-IRIFDIE-------SGK----------QVKSFKGSRDHE-GDLIKVILDPSGIYLA 657 (1080)
T ss_pred ceEEEeeeCCCcceEEEEecccc-eEEEecc-------ccc----------eeeeecccccCC-CceEEEEECCCccEEE
Confidence 45899999999999999999976 8999997 342 123444334443 3477888999999999
Q ss_pred EEeCCCeEEEEEcCCCCCeeecccccccccCCCC
Q 046828 466 IVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTL 499 (627)
Q Consensus 466 s~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~ 499 (627)
++..|.|+-+||.-..+.-....+|...|.|..+
T Consensus 658 tScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF 691 (1080)
T KOG1408|consen 658 TSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKF 691 (1080)
T ss_pred EeecCCceEEEEeccchhhhhhcCcchheeeeee
Confidence 9999999999999877766778888877766543
No 144
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.12 E-value=6.9e-09 Score=106.15 Aligned_cols=278 Identities=12% Similarity=0.093 Sum_probs=167.5
Q ss_pred hhhhccCCCCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCC
Q 046828 50 VAASISGDSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQ 129 (627)
Q Consensus 50 ~~~~~~~~~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~ 129 (627)
|+..++..-+.+||.|.-+.-|.- .+.+-....|.+-.||.++.+. ..--+..|-|.|.+++|.+.
T Consensus 136 ~~~~lvre~~GHkDGiW~Vaa~~t------qpi~gtASADhTA~iWs~Esg~-CL~~Y~GH~GSVNsikfh~s------- 201 (481)
T KOG0300|consen 136 VKFRLVRELEGHKDGIWHVAADST------QPICGTASADHTARIWSLESGA-CLATYTGHTGSVNSIKFHNS------- 201 (481)
T ss_pred eeEeehhhhcccccceeeehhhcC------CcceeecccccceeEEeecccc-ceeeecccccceeeEEeccc-------
Confidence 444455556778888877776531 2344456668899999999866 45566779999999988653
Q ss_pred CCcCCCCCEEEEEEccCccC----------Ccceeee--ccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe
Q 046828 130 EGFRNSHPLLLVVACDEAKN----------SGLVHVH--VGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR 197 (627)
Q Consensus 130 D~f~~~rpLlavv~~d~~~~----------~g~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~ 197 (627)
+-|++...+|++.- ..++.+. ++.+-.... | +.-...+..++.=...-..++..|+
T Consensus 202 ------~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~s---D---e~~~d~d~~~~sD~~tiRvPl~~lt 269 (481)
T KOG0300|consen 202 ------GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHS---D---EHNRDTDSSEKSDGHTIRVPLMRLT 269 (481)
T ss_pred ------cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcc---c---ccccccccccccCCceeeeeeeeee
Confidence 24444444443210 0000000 000000000 0 0000011111100000112455565
Q ss_pred -cCCeEEEEEec--CcEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCc
Q 046828 198 -FRSTVYMVRCS--PRIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLL 273 (627)
Q Consensus 198 -f~s~V~sV~~s--~~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v 273 (627)
+.+.|.+..+- .+-++.+ -+.+..+||++|++.++.+.+|... +.-++-.| .
T Consensus 270 gH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~E-------------LtHcstHp----------t- 325 (481)
T KOG0300|consen 270 GHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSE-------------LTHCSTHP----------T- 325 (481)
T ss_pred ccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchh-------------ccccccCC----------c-
Confidence 44566555542 3445554 4667899999999999999887542 00010000 0
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCc
Q 046828 274 PNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGR 353 (627)
Q Consensus 274 ~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~ 353 (627)
+.++ +
T Consensus 326 ------------------------------------QrLV-------------v-------------------------- 330 (481)
T KOG0300|consen 326 ------------------------------------QRLV-------------V-------------------------- 330 (481)
T ss_pred ------------------------------------ceEE-------------E--------------------------
Confidence 0000 0
Q ss_pred ccccccCCCCCCeEEEEECCC-CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccC
Q 046828 354 NASHSSDTDIAGMVVVKDIVS-RSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYD 432 (627)
Q Consensus 354 ~~~~~~~~~~dG~V~IwD~~s-~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~ 432 (627)
..+.|-+.++||+.. ...+..|++|+..|+++.|+-|. .++++|+|.| |+|||+....
T Consensus 331 ------TsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrT-vKvWdLrNMR------------- 389 (481)
T KOG0300|consen 331 ------TSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRT-VKVWDLRNMR------------- 389 (481)
T ss_pred ------EeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCce-EEEeeecccc-------------
Confidence 134678899999974 35689999999999999999876 5789999987 8999996221
Q ss_pred CCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 433 WTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 433 ~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
..+..+| +...++.|+.|.-+..||+--+..-|+|||++-.
T Consensus 390 -----splATIR---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 390 -----SPLATIR---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred -----Ccceeee---cCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 1344443 2345899999999999999999999999999754
No 145
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=6.9e-10 Score=118.34 Aligned_cols=107 Identities=21% Similarity=0.242 Sum_probs=83.1
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
...|.+.+|.+.+|+.+..+.+|-.+|+||.|+-||.+|+|||.||. |+||++..-... +.......++
T Consensus 100 ~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~-V~vW~l~~lv~a----------~~~~~~~p~~ 168 (476)
T KOG0646|consen 100 TISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGA-VLVWLLTDLVSA----------DNDHSVKPLH 168 (476)
T ss_pred cccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCcc-EEEEEEEeeccc----------ccCCCcccee
Confidence 36789999999999999999999999999999999999999999998 799987521110 1111222344
Q ss_pred EEeecCCcCcEEEEEEcc--CCCEEEEEeCCCeEEEEEcCCC
Q 046828 442 KLHRGMTSAVIQDICFSH--YSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSp--Dg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+ .+|+- .|.|+-..+ -.-+|+++|.|.|+++|++..-
T Consensus 169 ~f-~~Htl-sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 169 IF-SDHTL-SITDLQIGSGGTNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred ee-ccCcc-eeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence 44 45654 388886655 4568999999999999999764
No 146
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.11 E-value=2.1e-09 Score=109.79 Aligned_cols=117 Identities=16% Similarity=0.255 Sum_probs=77.3
Q ss_pred CCCCCCeEEEEECCCCeEEEEec-cCC-CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCC-CCCCC--c-c----
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFR-AHT-SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKG-RSGSA--S-Q---- 429 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~-aH~-~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~-~~g~~--~-~---- 429 (627)
.++.||.|+|||-.+.+++.+|. +|. +.|.+..|..+|++|.+.+.|.+ +++|.+....... -+|.+ + +
T Consensus 278 TaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-vkLWEi~t~R~l~~YtGAg~tgrq~~rt 356 (430)
T KOG0640|consen 278 TASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-VKLWEISTGRMLKEYTGAGTTGRQKHRT 356 (430)
T ss_pred EeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-eeeeeecCCceEEEEecCCcccchhhhh
Confidence 35789999999999999999997 885 56999999999999999999976 8999986211000 00110 0 0
Q ss_pred -----------------cc---CCCCce-eEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 430 -----------------TY---DWTSSH-VHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 430 -----------------~~---~~~~~~-~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
+. .|.+.. .++..+--||+.+ +..|.-||.+--+.++|+|-.++.|--
T Consensus 357 qAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a-~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 357 QAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGA-VRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCC-ceEEEeCCCCCceeeecccceeeeeee
Confidence 00 111110 1111222355543 677777888777888888888887754
No 147
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.11 E-value=4.9e-08 Score=103.52 Aligned_cols=103 Identities=8% Similarity=0.090 Sum_probs=67.3
Q ss_pred CCCeEEEEECCC--C--eEEEEeccCC------CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccC
Q 046828 363 IAGMVVVKDIVS--R--SVISQFRAHT------SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYD 432 (627)
Q Consensus 363 ~dG~V~IwD~~s--~--~~l~~~~aH~------~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~ 432 (627)
.++.|.+||+.. + +.+..+..+. .....+.|+|||++|+++......|.||++.+.. +.
T Consensus 195 ~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~-----~~------ 263 (330)
T PRK11028 195 LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG-----SV------ 263 (330)
T ss_pred CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC-----Ce------
Confidence 468899999863 2 2333333221 1234689999999999987655569999986321 10
Q ss_pred CCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeC-CCeEEEEEcCCCCC
Q 046828 433 WTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSS-RGTCHIFVLTPFGG 483 (627)
Q Consensus 433 ~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~-dgTvhIw~i~~~gg 483 (627)
...+.....|. ....++|+|||++|+++.. +++|.||+++...+
T Consensus 264 ----~~~~~~~~~~~---~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g 308 (330)
T PRK11028 264 ----LSFEGHQPTET---QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETG 308 (330)
T ss_pred ----EEEeEEEeccc---cCCceEECCCCCEEEEEEccCCcEEEEEEcCCCC
Confidence 01122222231 2457899999999999886 89999999975443
No 148
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.11 E-value=7.8e-10 Score=116.26 Aligned_cols=148 Identities=14% Similarity=0.135 Sum_probs=110.4
Q ss_pred CCCCCCeEEEEECCCC---------eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccc
Q 046828 360 DTDIAGMVVVKDIVSR---------SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQT 430 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~---------~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~ 430 (627)
+++.|..|+||-+... +-+..+..|+..|+++.|+|+|.+||+|+++|. |.+|......-. ... .+
T Consensus 31 T~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~-v~lWk~~~~~~~--~~d--~e 105 (434)
T KOG1009|consen 31 TAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGE-VFLWKQGDVRIF--DAD--TE 105 (434)
T ss_pred cccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCce-EEEEEecCcCCc--ccc--ch
Confidence 5678999999987543 346778899999999999999999999999998 789975411000 000 01
Q ss_pred cCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCCCccCCCCCC
Q 046828 431 YDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPVLSVPWWSS 510 (627)
Q Consensus 431 ~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~~~~~~~~~ 510 (627)
.+...+.+.+.+..|||. ..|++++|+||+.++++++.|.++++|++..-.-...+..|..-+.+..++|...+....+
T Consensus 106 ~~~~ke~w~v~k~lr~h~-~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s 184 (434)
T KOG1009|consen 106 ADLNKEKWVVKKVLRGHR-DDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKS 184 (434)
T ss_pred hhhCccceEEEEEecccc-cchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhc
Confidence 122334467777778864 4699999999999999999999999999987666667778887788888887755444333
Q ss_pred Ccc
Q 046828 511 PSF 513 (627)
Q Consensus 511 ~~~ 513 (627)
.++
T Consensus 185 ~dr 187 (434)
T KOG1009|consen 185 SDR 187 (434)
T ss_pred cCc
Confidence 433
No 149
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=1.2e-09 Score=116.47 Aligned_cols=248 Identities=10% Similarity=0.068 Sum_probs=150.6
Q ss_pred EEEEEECCCCceEE-EEecCCeEEEEEecC--cEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccce
Q 046828 181 AVRFYSLRSHNYVH-VLRFRSTVYMVRCSP--RIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGP 256 (627)
Q Consensus 181 tV~lwdl~t~~~V~-tL~f~s~V~sV~~s~--~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~ 256 (627)
.|.+|.+.....++ .+-.+.+|.++..++ .+|+.+ ..+.||||.+.||+.+..+..|-.+ +..
T Consensus 62 ~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~-------------ITc 128 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQS-------------ITC 128 (476)
T ss_pred cccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccc-------------eeE
Confidence 58899987666555 445788999999987 566666 6889999999999999888776543 222
Q ss_pred --eeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccc
Q 046828 257 --MAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDF 334 (627)
Q Consensus 257 --iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~ 334 (627)
|+-.+..|-.++++..|..|-...+-+- .... ..+-+..+.+-. -.++.+..
T Consensus 129 L~fs~dgs~iiTgskDg~V~vW~l~~lv~a-----------~~~~------------~~~p~~~f~~Ht-lsITDl~i-- 182 (476)
T KOG0646|consen 129 LKFSDDGSHIITGSKDGAVLVWLLTDLVSA-----------DNDH------------SVKPLHIFSDHT-LSITDLQI-- 182 (476)
T ss_pred EEEeCCCcEEEecCCCccEEEEEEEeeccc-----------ccCC------------CccceeeeccCc-ceeEEEEe--
Confidence 3334467777777666554432210000 0000 000000000000 00111100
Q ss_pred cCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEe
Q 046828 335 IPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFR 414 (627)
Q Consensus 335 ~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwd 414 (627)
..|...+...+++.|.+|++||+..+..+..+.- ..+|.+++.+|-++.+..|.++|. |-+++
T Consensus 183 ---------------g~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~-I~~~~ 245 (476)
T KOG0646|consen 183 ---------------GSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGK-IFQNL 245 (476)
T ss_pred ---------------cCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcce-EEeee
Confidence 0011111112567999999999999988877763 578999999999999999999997 66666
Q ss_pred CCCCCCCCCCCCCccccCCCCceeEEEEEeecCCc-CcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecc
Q 046828 415 IMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTS-AVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQ 488 (627)
Q Consensus 415 i~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~-a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~ 488 (627)
+...... +.|--.+..+.... . ....-|+.. ..|.+++.|-||..|++|+.||+|.||++.......++.
T Consensus 246 ~~~~~~~-~~~v~~k~~~~~~t--~-~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 246 LFKLSGQ-SAGVNQKGRHEENT--Q-INVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred hhcCCcc-cccccccccccccc--e-eeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 6421100 00000011111111 1 222346665 349999999999999999999999999998765444433
No 150
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.10 E-value=6.5e-09 Score=107.01 Aligned_cols=102 Identities=19% Similarity=0.268 Sum_probs=73.8
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
.-+.+.||.+-++|.|+....-...+. .|.+.+.-+++.| .+|-|++.+
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~-ghG~sINeik~~p-------------~~~qlvls~----------------- 154 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYR-GHGGSINEIKFHP-------------DRPQLVLSA----------------- 154 (385)
T ss_pred eeEEeecceeEEEEEecchhhhcccee-ccCccchhhhcCC-------------CCCcEEEEe-----------------
Confidence 567778889999999999855333333 3566665555544 345554432
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe----cCCeEEEEEecC--cEEEEE-eCCeEEEEeCCCCc
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR----FRSTVYMVRCSP--RIVAVG-LAAQIYCFDALTLE 229 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~----f~s~V~sV~~s~--~~LaV~-~~~~I~i~D~~t~e 229 (627)
+.+.+||+|+++++.+|..+. ++..|.+|+++. ++|+++ .+-+|.+|++.+-+
T Consensus 155 ----------------SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 155 ----------------SKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred ----------------cCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence 124789999999999999885 577999999996 566665 67799999998543
No 151
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=2.8e-08 Score=110.20 Aligned_cols=249 Identities=12% Similarity=0.138 Sum_probs=161.0
Q ss_pred CCCCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCC
Q 046828 56 GDSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNS 135 (627)
Q Consensus 56 ~~~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~ 135 (627)
++++.+-|.+.|| +..+++..|.++.+.-||+.+.....+ +..-.|++=.+.+.|..
T Consensus 66 g~~drsIE~L~W~----------e~~RLFS~g~sg~i~EwDl~~lk~~~~-~d~~gg~IWsiai~p~~------------ 122 (691)
T KOG2048|consen 66 GPEDRSIESLAWA----------EGGRLFSSGLSGSITEWDLHTLKQKYN-IDSNGGAIWSIAINPEN------------ 122 (691)
T ss_pred cCCCCceeeEEEc----------cCCeEEeecCCceEEEEecccCceeEE-ecCCCcceeEEEeCCcc------------
Confidence 4555567888888 237899999999999999998662222 22223555445544432
Q ss_pred CCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec---CCeEEEEEecC--c
Q 046828 136 HPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF---RSTVYMVRCSP--R 210 (627)
Q Consensus 136 rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f---~s~V~sV~~s~--~ 210 (627)
..++ ++||+ +.+.+.+...++......| .++|.++.+++ .
T Consensus 123 -~~l~-Igcdd---------------------------------Gvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~ 167 (691)
T KOG2048|consen 123 -TILA-IGCDD---------------------------------GVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT 167 (691)
T ss_pred -ceEE-eecCC---------------------------------ceEEEEecCCceEEEEeecccccceEEEEEecCCcc
Confidence 2344 45554 3355555555554444333 57999999998 4
Q ss_pred EEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSV 289 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~ 289 (627)
.|+.|. ++.|+|||+.++..++.++-.-. +.+-+-..+..+ +.|-.+
T Consensus 168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d---------~l~k~~~~iVWS---v~~Lrd-------------------- 215 (691)
T KOG2048|consen 168 KIAGGSIDGVIRIWDVKSGQTLHIITMQLD---------RLSKREPTIVWS---VLFLRD-------------------- 215 (691)
T ss_pred EEEecccCceEEEEEcCCCceEEEeeeccc---------ccccCCceEEEE---EEEeec--------------------
Confidence 467775 45699999999988874321100 000000011110 111110
Q ss_pred CCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE
Q 046828 290 SPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV 369 (627)
Q Consensus 290 s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I 369 (627)
+.+ ++++..|.|++
T Consensus 216 --------------------------------------------------------------~tI----~sgDS~G~V~F 229 (691)
T KOG2048|consen 216 --------------------------------------------------------------STI----ASGDSAGTVTF 229 (691)
T ss_pred --------------------------------------------------------------CcE----EEecCCceEEE
Confidence 111 14567899999
Q ss_pred EECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCc
Q 046828 370 KDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTS 449 (627)
Q Consensus 370 wD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~ 449 (627)
||...+..+..+..|...|.||+-++++.++.+|+.|+++|++.... . +. .+-....|++| .
T Consensus 230 Wd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~-~------~~----------~wv~~~~r~~h-~ 291 (691)
T KOG2048|consen 230 WDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTT-N------KS----------EWVINSRRDLH-A 291 (691)
T ss_pred EcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecC-C------cc----------ceeeeccccCC-c
Confidence 99999999999999999999999999999999999999977666532 1 11 02233333444 3
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 450 AVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 450 a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
..|.+++..++ .|.+++.|.++.+=....
T Consensus 292 hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 292 HDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred ccceeeeeecc--eEEecceeeEEEEccccc
Confidence 46999999988 888999999988766554
No 152
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=3.9e-09 Score=112.54 Aligned_cols=95 Identities=15% Similarity=0.310 Sum_probs=72.8
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
+..|.|.|....+++.+..|+- .+.|+.++|+.||+.|...+.+|. |.|||+... ..++
T Consensus 322 G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~Ge-V~v~nl~~~-------------------~~~~ 380 (514)
T KOG2055|consen 322 GNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGE-VYVWNLRQN-------------------SCLH 380 (514)
T ss_pred ccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCce-EEEEecCCc-------------------ceEE
Confidence 3556777777777777777774 467999999999999999999997 799999621 1333
Q ss_pred EEeecCCcCc--EEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 442 KLHRGMTSAV--IQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 442 ~l~rG~t~a~--I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
++ .+... =.++|.|++++|||+||+.|-|-||+.+.
T Consensus 381 rf---~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 381 RF---VDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred EE---eecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 33 22222 36788899999999999999999999764
No 153
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=1.4e-09 Score=112.28 Aligned_cols=183 Identities=19% Similarity=0.211 Sum_probs=126.5
Q ss_pred CcEEEEEECCCCceEEEEecC-CeEEEEEec----CcEEEEE-eCCeEEEEeCCCCceeEEEEc--CC-CCCCCCCCCcC
Q 046828 179 PTAVRFYSLRSHNYVHVLRFR-STVYMVRCS----PRIVAVG-LAAQIYCFDALTLESKFSVLT--YP-VPHFGGQGTSG 249 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s----~~~LaV~-~~~~I~i~D~~t~e~~~tl~~--~p-~~~~~~~g~~~ 249 (627)
.+.|++||..|++.+..++.. ..+..|+|. +..|.++ .++.|++||+++....-.+.. +| .|
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~--------- 119 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP--------- 119 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc---------
Confidence 377999999999999999854 467777774 4566555 577999999999876544433 32 11
Q ss_pred cccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEE
Q 046828 250 VNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTL 327 (627)
Q Consensus 250 ~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~ 327 (627)
...|+.+. +.+|.+..
T Consensus 120 ----f~~ld~nck~~ii~~GtE---------------------------------------------------------- 137 (376)
T KOG1188|consen 120 ----FICLDLNCKKNIIACGTE---------------------------------------------------------- 137 (376)
T ss_pred ----ceEeeccCcCCeEEeccc----------------------------------------------------------
Confidence 22233321 23333210
Q ss_pred eeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeE-EEE-eccCCCCeEEEEECCC-CCEEEEEe
Q 046828 328 SRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSV-ISQ-FRAHTSPISALCFDRS-GTLLVTAS 404 (627)
Q Consensus 328 s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~-l~~-~~aH~~~Is~laFspd-G~lLaTaS 404 (627)
-...+-.|.+||.++.++ +.. +..|...|++|+|.|+ -.+|+|||
T Consensus 138 --------------------------------~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS 185 (376)
T KOG1188|consen 138 --------------------------------LTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS 185 (376)
T ss_pred --------------------------------cccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec
Confidence 012456799999998766 444 4589999999999995 58999999
Q ss_pred CCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCC-CEEEEEeCCCeEEEEEcCCCCC
Q 046828 405 IHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYS-QWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 405 ~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg-~~Las~S~dgTvhIw~i~~~gg 483 (627)
.||- |+|||++-... .+ ..+..+. +.+.|..|.|..++ +.|.+-+-.+|..+|+++....
T Consensus 186 vDGL-vnlfD~~~d~E----------eD-----aL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 186 VDGL-VNLFDTKKDNE----------ED-----ALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred ccce-EEeeecCCCcc----------hh-----hHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 9996 89999962210 00 0122221 22349999999998 4588889999999999987653
No 154
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.07 E-value=2e-10 Score=122.32 Aligned_cols=210 Identities=17% Similarity=0.199 Sum_probs=135.4
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEec--CcEEEEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccccee
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCS--PRIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPM 257 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s--~~~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~i 257 (627)
+-|-.+|.+|++...++.....|++|.|- ..++||+...-+||||= .|..+++|..+... .-+
T Consensus 151 GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHClk~~~~v--------------~rL 215 (545)
T KOG1272|consen 151 GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDN-NGTELHCLKRHIRV--------------ARL 215 (545)
T ss_pred cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecC-CCcEEeehhhcCch--------------hhh
Confidence 44788999999999999999999999994 58999999999999995 46678888775311 111
Q ss_pred eEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecccc
Q 046828 258 AVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFI 335 (627)
Q Consensus 258 Al~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~ 335 (627)
.+=| -+||.++....++. |-. +-|.+|+.+.... |+...-..
T Consensus 216 eFLPyHfLL~~~~~~G~L~Y------~DV-----------S~GklVa~~~t~~-----------G~~~vm~q-------- 259 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAGFLKY------QDV-----------STGKLVASIRTGA-----------GRTDVMKQ-------- 259 (545)
T ss_pred cccchhheeeecccCCceEE------Eee-----------chhhhhHHHHccC-----------Cccchhhc--------
Confidence 1111 24444443322111 100 1122222211111 11100000
Q ss_pred CCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 336 PDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 336 p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
| .|. . + .| .+...|+|.+|...+.+++..+..|.++|++|+++++|+++||++.|.. ++|||+
T Consensus 260 ----------N-P~N-a-V-ih--~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDl 322 (545)
T KOG1272|consen 260 ----------N-PYN-A-V-IH--LGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDL 322 (545)
T ss_pred ----------C-Ccc-c-e-EE--EcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeee
Confidence 0 010 0 0 11 3567899999999999999999999999999999999999999999976 899999
Q ss_pred CCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 416 MPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 416 ~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.-. .++...+ ++.....++||..|- ++.+.-.-|+||.=.-.
T Consensus 323 R~~-------------------~ql~t~~---tp~~a~~ls~Sqkgl--LA~~~G~~v~iw~d~~~ 364 (545)
T KOG1272|consen 323 RNF-------------------YQLHTYR---TPHPASNLSLSQKGL--LALSYGDHVQIWKDALK 364 (545)
T ss_pred ccc-------------------cccceee---cCCCccccccccccc--eeeecCCeeeeehhhhc
Confidence 611 1333333 233468899998873 33444557899975433
No 155
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.02 E-value=9.5e-08 Score=103.01 Aligned_cols=99 Identities=13% Similarity=0.163 Sum_probs=77.6
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
..+.|+.|++|+ ..+++-... -..|+.|+.|+|.| .||.+...|+ --|.|++. ..
T Consensus 385 T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~-w~V~d~e~--------------------~~ 439 (626)
T KOG2106|consen 385 TCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGR-WFVLDTET--------------------QD 439 (626)
T ss_pred eccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccce-EEEEeccc--------------------ce
Confidence 467899999999 333333222 25789999999999 9999999998 56888761 13
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCee
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGET 485 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~ 485 (627)
+..++.- ++.+..++|||||.+||++|.|+.|.||.+...|-..
T Consensus 440 lv~~~~d--~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y 483 (626)
T KOG2106|consen 440 LVTIHTD--NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKY 483 (626)
T ss_pred eEEEEec--CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEE
Confidence 4444432 5679999999999999999999999999999877554
No 156
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=1.9e-07 Score=103.39 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=60.1
Q ss_pred EEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC--CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q 046828 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG--NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH 444 (627)
Q Consensus 367 V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG--t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~ 444 (627)
|.++|+.+++. ..+..+.......+|+|||++|+..+.++ ..|.+||+. ++ ....+.
T Consensus 313 Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~-------~g-------------~~~~Lt 371 (429)
T PRK03629 313 VYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA-------TG-------------GVQVLT 371 (429)
T ss_pred EEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECC-------CC-------------CeEEeC
Confidence 44456655533 23333344566789999999998876543 236777874 22 122232
Q ss_pred ecCCcCcEEEEEEccCCCEEEEEeCCCeE---EEEEcCCCCC-eeecccccccc
Q 046828 445 RGMTSAVIQDICFSHYSQWIAIVSSRGTC---HIFVLTPFGG-ETVLQIQNSHV 494 (627)
Q Consensus 445 rG~t~a~I~sIaFSpDg~~Las~S~dgTv---hIw~i~~~gg-~~~~~~h~s~v 494 (627)
... ...+.+|||||++|+.++.++.. .++++ .|+ ...+..|...+
T Consensus 372 ~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~--~G~~~~~l~~~~~~~ 420 (429)
T PRK03629 372 DTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVST--DGRFKARLPATDGQV 420 (429)
T ss_pred CCC---CCCCceECCCCCEEEEEEcCCCceEEEEEEC--CCCCeEECccCCCCc
Confidence 221 23568899999999999988763 34444 333 33454554433
No 157
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.01 E-value=1.9e-08 Score=107.33 Aligned_cols=238 Identities=13% Similarity=0.136 Sum_probs=148.6
Q ss_pred CCCCCCeEEEEeccCc-EEEEecCCCC---CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCc
Q 046828 76 SPSSFKHVLLLGYSNG-FQVLDVEDAT---NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSG 151 (627)
Q Consensus 76 ~~~~~~~vl~~Gy~~G-~qVWdv~~~~---~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g 151 (627)
++.+-++++++|...| +-+||+...+ .-.-++..|.++|..+.+.|.-.. .+..
T Consensus 195 HPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s------------~i~s---------- 252 (498)
T KOG4328|consen 195 HPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS------------QIYS---------- 252 (498)
T ss_pred cccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh------------heee----------
Confidence 4445578888888776 9999994211 113456678899999999876421 1211
Q ss_pred ceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc--eEEEEe-cCCeEEEEEecC---cEEEEEeCCeEEEEeC
Q 046828 152 LVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN--YVHVLR-FRSTVYMVRCSP---RIVAVGLAAQIYCFDA 225 (627)
Q Consensus 152 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~--~V~tL~-f~s~V~sV~~s~---~~LaV~~~~~I~i~D~ 225 (627)
.++++++|+-|++++. +|.+++ -....++++++. .+|++..-+...+||+
T Consensus 253 ------------------------sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~ 308 (498)
T KOG4328|consen 253 ------------------------SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDL 308 (498)
T ss_pred ------------------------eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEe
Confidence 1246889999988764 344443 123567777764 4455555567889999
Q ss_pred CCCceeEE-EEcCCCCCCCCCCCcCcccccceeeEcC---ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCccc
Q 046828 226 LTLESKFS-VLTYPVPHFGGQGTSGVNIGYGPMAVGP---RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLM 301 (627)
Q Consensus 226 ~t~e~~~t-l~~~p~~~~~~~g~~~~~~~~~~iAl~~---r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v 301 (627)
++....+. ++-|... ++.+++.| -+||
T Consensus 309 R~~~s~~~~~~lh~kK-------------I~sv~~NP~~p~~la------------------------------------ 339 (498)
T KOG4328|consen 309 RTDGSEYENLRLHKKK-------------ITSVALNPVCPWFLA------------------------------------ 339 (498)
T ss_pred ecCCccchhhhhhhcc-------------cceeecCCCCchhee------------------------------------
Confidence 88664322 2223222 22233322 1111
Q ss_pred chhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe----E
Q 046828 302 ARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS----V 377 (627)
Q Consensus 302 ~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~----~ 377 (627)
.++.|++++|||+.... +
T Consensus 340 ----------------------------------------------------------T~s~D~T~kIWD~R~l~~K~sp 361 (498)
T KOG4328|consen 340 ----------------------------------------------------------TASLDQTAKIWDLRQLRGKASP 361 (498)
T ss_pred ----------------------------------------------------------ecccCcceeeeehhhhcCCCCc
Confidence 34578899999997642 3
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEE
Q 046828 378 ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICF 457 (627)
Q Consensus 378 l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaF 457 (627)
+....+|..+|.+..|||+|-.|+|.+.|.+ |||||.. .- + +-..+.....|-.+..|-. .+..-+|
T Consensus 362 ~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss-~~-----s---a~~~p~~~I~Hn~~t~Rwl---T~fKA~W 428 (498)
T KOG4328|consen 362 FLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSS-CI-----S---AKDEPLGTIPHNNRTGRWL---TPFKAAW 428 (498)
T ss_pred ceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecc-cc-----c---ccCCccceeeccCcccccc---cchhhee
Confidence 4455689999999999999888999999987 8999973 00 0 0001111111111111111 1455689
Q ss_pred ccCCCEEEEEeCCCeEEEEEcC
Q 046828 458 SHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 458 SpDg~~Las~S~dgTvhIw~i~ 479 (627)
-||..+++++-....|-||+-+
T Consensus 429 ~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 429 DPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred CCCccEEEEeccCcceeEEcCC
Confidence 9999999999999999998853
No 158
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.01 E-value=3.8e-07 Score=95.47 Aligned_cols=192 Identities=18% Similarity=0.260 Sum_probs=126.3
Q ss_pred EEEEEECCCCceEEEEecC--C--eEEEEEecCc--EEEEE---eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcc
Q 046828 181 AVRFYSLRSHNYVHVLRFR--S--TVYMVRCSPR--IVAVG---LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVN 251 (627)
Q Consensus 181 tV~lwdl~t~~~V~tL~f~--s--~V~sV~~s~~--~LaV~---~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~ 251 (627)
.|-|||+++-+++|+|.-. . .+.++.+|.. +||.= ..+.|++||+.+.+..-+|..|..+
T Consensus 107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~----------- 175 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP----------- 175 (391)
T ss_pred cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc-----------
Confidence 3999999999999999743 2 4666666653 77753 3467999999999988888877544
Q ss_pred cccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEee
Q 046828 252 IGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSR 329 (627)
Q Consensus 252 ~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~ 329 (627)
+.++|+++ .+||.++
T Consensus 176 --lAalafs~~G~llATAS------------------------------------------------------------- 192 (391)
T KOG2110|consen 176 --LAALAFSPDGTLLATAS------------------------------------------------------------- 192 (391)
T ss_pred --eeEEEECCCCCEEEEec-------------------------------------------------------------
Confidence 33344433 3444443
Q ss_pred eeccccCCCCCCCccCCCccccCcccccccCCCCCC-eEEEEECCCCeEEEEeccCC--CCeEEEEECCCCCEEEEEeCC
Q 046828 330 YYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAG-MVVVKDIVSRSVISQFRAHT--SPISALCFDRSGTLLVTASIH 406 (627)
Q Consensus 330 y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG-~V~IwD~~s~~~l~~~~aH~--~~Is~laFspdG~lLaTaS~d 406 (627)
+.| .|||+++.+++.+..|+.-. ..|.+|+|+||+++|+..|..
T Consensus 193 ---------------------------------eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T 239 (391)
T KOG2110|consen 193 ---------------------------------EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT 239 (391)
T ss_pred ---------------------------------cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC
Confidence 233 47999999999999998654 358999999999999999999
Q ss_pred CCEEEEEeCCCCCCCCCCCCCc-------------cccCCCCceeEEEEEeecCCc-----CcE-EEEEEc--cCCCEEE
Q 046828 407 GNNINIFRIMPSSSKGRSGSAS-------------QTYDWTSSHVHLYKLHRGMTS-----AVI-QDICFS--HYSQWIA 465 (627)
Q Consensus 407 Gt~I~Vwdi~p~~~~~~~g~~~-------------~~~~~~~~~~~l~~l~rG~t~-----a~I-~sIaFS--pDg~~La 465 (627)
+| |+||.+....... ...+. .++.+ ..+...+...|-... +.. ..++|+ ++...+.
T Consensus 240 eT-VHiFKL~~~~~~~-~~~p~~~~~~~~~~sk~~~sylp-s~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~ 316 (391)
T KOG2110|consen 240 ET-VHIFKLEKVSNNP-PESPTAGTSWFGKVSKAATSYLP-SQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVL 316 (391)
T ss_pred Ce-EEEEEecccccCC-CCCCCCCCcccchhhhhhhhhcc-hhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEE
Confidence 98 8999986332110 01000 00000 000011111111111 111 334555 4788999
Q ss_pred EEeCCCeEEEEEcCCCC
Q 046828 466 IVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 466 s~S~dgTvhIw~i~~~g 482 (627)
+++.||.+..|.+++..
T Consensus 317 vas~dG~~y~y~l~~~~ 333 (391)
T KOG2110|consen 317 VASYDGHLYSYRLPPKE 333 (391)
T ss_pred EEEcCCeEEEEEcCCCC
Confidence 99999999999999863
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.01 E-value=4.3e-07 Score=93.57 Aligned_cols=228 Identities=18% Similarity=0.260 Sum_probs=150.6
Q ss_pred eEEEEec-cCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 82 HVLLLGY-SNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 82 ~vl~~Gy-~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
.++..+. ++.+++||+.........+..|...|+.+.+.|.. ..++... .
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~~~~--~-------------- 175 (466)
T COG2319 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-------------KLLASGS--S-------------- 175 (466)
T ss_pred EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC-------------CEEEecC--C--------------
Confidence 3444455 77899999997233356666777777877776543 2332210 0
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecC--c-EEEE-EeCCeEEEEeCCCCceeE-EE
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP--R-IVAV-GLAAQIYCFDALTLESKF-SV 234 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~--~-~LaV-~~~~~I~i~D~~t~e~~~-tl 234 (627)
.++.+++|+++++..+..+.. ...|..+++++ + +++. +.++.|.+||..+++.+. .+
T Consensus 176 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~ 238 (466)
T COG2319 176 -----------------LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL 238 (466)
T ss_pred -----------------CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeec
Confidence 136799999999999999985 56899999987 3 4444 356689999988777665 34
Q ss_pred EcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhc
Q 046828 235 LTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAA 314 (627)
Q Consensus 235 ~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~ 314 (627)
..|... . +. .+.....
T Consensus 239 ~~~~~~--------------~-~~------~~~~~~~------------------------------------------- 254 (466)
T COG2319 239 SGHSDS--------------V-VS------SFSPDGS------------------------------------------- 254 (466)
T ss_pred CCCCcc--------------e-eE------eECCCCC-------------------------------------------
Confidence 443321 0 10 1111100
Q ss_pred ceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeE-EEEeccCCCCeEEEEE
Q 046828 315 GLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSV-ISQFRAHTSPISALCF 393 (627)
Q Consensus 315 gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~-l~~~~aH~~~Is~laF 393 (627)
.+ ..+..++.+++||+..... +..+..|..+|.++.|
T Consensus 255 -----------~~-------------------------------~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 292 (466)
T COG2319 255 -----------LL-------------------------------ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292 (466)
T ss_pred -----------EE-------------------------------EEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEE
Confidence 00 0235789999999987664 5555788999999999
Q ss_pred CCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE-eecCCcCcEEEEEEccCCCEEEEE-eCCC
Q 046828 394 DRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL-HRGMTSAVIQDICFSHYSQWIAIV-SSRG 471 (627)
Q Consensus 394 spdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l-~rG~t~a~I~sIaFSpDg~~Las~-S~dg 471 (627)
+|++..+++++.++. +++||+. . .. ..... ..++.. .|..+.|++++..++.+ ..|+
T Consensus 293 ~~~~~~~~~~~~d~~-~~~~~~~-~------~~------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~ 351 (466)
T COG2319 293 SPDGKLLASGSSDGT-VRLWDLE-T------GK------------LLSSLTLKGHEG-PVSSLSFSPDGSLLVSGGSDDG 351 (466)
T ss_pred CCCCCEEEEeeCCCc-EEEEEcC-C------Cc------------eEEEeeecccCC-ceEEEEECCCCCEEEEeecCCC
Confidence 999999999999966 8999875 1 11 12222 134433 58999994343566666 6889
Q ss_pred eEEEEEcCCCC
Q 046828 472 TCHIFVLTPFG 482 (627)
Q Consensus 472 TvhIw~i~~~g 482 (627)
.+.+|++....
T Consensus 352 ~~~~~~~~~~~ 362 (466)
T COG2319 352 TIRLWDLRTGK 362 (466)
T ss_pred cEEeeecCCCc
Confidence 99999987654
No 160
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=2.2e-08 Score=109.66 Aligned_cols=289 Identities=18% Similarity=0.177 Sum_probs=171.7
Q ss_pred CCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeee-cc
Q 046828 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVH-VG 158 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~-~~ 158 (627)
+.-+..++.++.++||-+.++-.++.+. -|+.|++|.+.|.+.. ++|||..++. .-.+.+. ++
T Consensus 412 G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~-----------~vLAvA~~~~---~~ivnp~~G~ 475 (733)
T KOG0650|consen 412 GEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDL-----------CVLAVAVGEC---VLIVNPIFGD 475 (733)
T ss_pred cceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCc-----------eeEEEEecCc---eEEeCccccc
Confidence 3556666667779999999977555443 4789999999988743 7888765322 0000000 00
Q ss_pred C--ccc--ccCCCCCCCCCCCCcCCcEEEEEECCC---Cc-eE-EEEecCCeEEEEEecC--cEEEEE--e--CCeEEEE
Q 046828 159 R--DGL--VRDGYDEPQPGNVAMSPTAVRFYSLRS---HN-YV-HVLRFRSTVYMVRCSP--RIVAVG--L--AAQIYCF 223 (627)
Q Consensus 159 ~--~~~--~~~g~~~~~~~~~~~~~~tV~lwdl~t---~~-~V-~tL~f~s~V~sV~~s~--~~LaV~--~--~~~I~i~ 223 (627)
. .+. ...+.- | +..+.+..|-.|.-.. ++ -| -++++..+|..|.+.+ ++|++. . ...|.|+
T Consensus 476 ~~e~~~t~ell~~~-~---~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 476 RLEVGPTKELLASA-P---NESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred hhhhcchhhhhhcC-C---CccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 0 000 000000 0 1233456788897542 11 13 3567888999999986 677654 3 4469999
Q ss_pred eCCCCcee--E-EEEc-------CCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCC
Q 046828 224 DALTLESK--F-SVLT-------YPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPST 293 (627)
Q Consensus 224 D~~t~e~~--~-tl~~-------~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~ 293 (627)
++...... | ...| ||.. .-+ ++|..-+- .+.
T Consensus 552 QLSK~~sQ~PF~kskG~vq~v~FHPs~--------------p~l-----fVaTq~~v---RiY----------------- 592 (733)
T KOG0650|consen 552 QLSKRKSQSPFRKSKGLVQRVKFHPSK--------------PYL-----FVATQRSV---RIY----------------- 592 (733)
T ss_pred ecccccccCchhhcCCceeEEEecCCC--------------ceE-----EEEeccce---EEE-----------------
Confidence 98754322 2 1122 3321 001 22333210 000
Q ss_pred CCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC
Q 046828 294 SPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV 373 (627)
Q Consensus 294 s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~ 373 (627)
.++ -.+..|++..|.+++..+..+ |.|. +...++.|+.+..+|+.
T Consensus 593 -----dL~---kqelvKkL~tg~kwiS~msih----------p~GD-----------------nli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 593 -----DLS---KQELVKKLLTGSKWISSMSIH----------PNGD-----------------NLILGSYDKKMCWFDLD 637 (733)
T ss_pred -----ehh---HHHHHHHHhcCCeeeeeeeec----------CCCC-----------------eEEEecCCCeeEEEEcc
Confidence 000 123345566665555433211 1110 11235789999999987
Q ss_pred CC-eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCC--CCceeEEEEEeecCCcC
Q 046828 374 SR-SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDW--TSSHVHLYKLHRGMTSA 450 (627)
Q Consensus 374 s~-~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~--~~~~~~l~~l~rG~t~a 450 (627)
-. ++..+++-|...|..++|++.=-++|+||+||+ +.||--+-.. |+ ....+.+.+| |||..-
T Consensus 638 lsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt-v~Vfhg~VY~------------Dl~qnpliVPlK~L-~gH~~~ 703 (733)
T KOG0650|consen 638 LSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT-VIVFHGMVYN------------DLLQNPLIVPLKRL-RGHEKT 703 (733)
T ss_pred cCcchhHHhhhhhhhhhhhhhccccceeeeecCCCc-EEEEeeeeeh------------hhhcCCceEeeeec-cCceee
Confidence 54 678889999999999999999999999999999 5777433110 11 1112344444 676532
Q ss_pred ---cEEEEEEccCCCEEEEEeCCCeEEEE
Q 046828 451 ---VIQDICFSHYSQWIAIVSSRGTCHIF 476 (627)
Q Consensus 451 ---~I~sIaFSpDg~~Las~S~dgTvhIw 476 (627)
.|.+..|.|.--||.+++.||||++|
T Consensus 704 ~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 704 NDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cccceEeecccCCCceEEecCCCceEEee
Confidence 28899999999999999999999998
No 161
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=5.5e-09 Score=103.90 Aligned_cols=100 Identities=21% Similarity=0.254 Sum_probs=76.4
Q ss_pred CCCCCeEEEEECCCC---eEEEEeccCCCCeEEEEECCC---C-----------CEEEEEeCCCCEEEEEeCCCCCCCCC
Q 046828 361 TDIAGMVVVKDIVSR---SVISQFRAHTSPISALCFDRS---G-----------TLLVTASIHGNNINIFRIMPSSSKGR 423 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~---~~l~~~~aH~~~Is~laFspd---G-----------~lLaTaS~dGt~I~Vwdi~p~~~~~~ 423 (627)
++.||.|.|.+..+. ..-..+.+|+-.|+++++.|. | +.||+|.-|.. |+||+..
T Consensus 122 asSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~-VkiW~~~------- 193 (299)
T KOG1332|consen 122 ASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNL-VKIWKFD------- 193 (299)
T ss_pred eeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccc-eeeeecC-------
Confidence 456777777766543 223456799999999999998 7 77999999976 8999975
Q ss_pred CCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCC----CEEEEEeCCCeEEEEEcCC
Q 046828 424 SGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYS----QWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 424 ~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg----~~Las~S~dgTvhIw~i~~ 480 (627)
+++ +.+-+..+||+. .|.++||.|.- ..||++|.||+|.||....
T Consensus 194 ~~~-----------w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 194 SDS-----------WKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred Ccc-----------hhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 222 334443578764 59999999954 5899999999999999873
No 162
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.98 E-value=3.3e-08 Score=100.37 Aligned_cols=121 Identities=17% Similarity=0.212 Sum_probs=75.2
Q ss_pred CCCCCCeEEEEECCCC-eEEEEeccCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCC--CCCCCCccccCCCC
Q 046828 360 DTDIAGMVVVKDIVSR-SVISQFRAHTSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSK--GRSGSASQTYDWTS 435 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~--~~~g~~~~~~~~~~ 435 (627)
+++.||.|+|||+++- .++..+.+|...|.++.|+|. .++|.|++.|-. +.+|........ -..+.-.++.....
T Consensus 232 t~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~Lsca~svSSE~qi~~~~dese~e~~d 310 (370)
T KOG1007|consen 232 TCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNLSCASSVSSEQQIEFEDDESESEDED 310 (370)
T ss_pred EcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce-eEEEeccccccccccccccccccCcchh
Confidence 3568999999999764 578999999999999999996 678899999987 678864311000 00000000000000
Q ss_pred ceeEEEEEeecC------CcCcEEEEEEccCCCEE-EEEeCCCeEEEEEcCCC
Q 046828 436 SHVHLYKLHRGM------TSAVIQDICFSHYSQWI-AIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 436 ~~~~l~~l~rG~------t~a~I~sIaFSpDg~~L-as~S~dgTvhIw~i~~~ 481 (627)
...+...|..|. ....|++++||.-.-|+ |+-|.||.+.|=.+.++
T Consensus 311 seer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 311 SEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred hHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 001111122211 12349999999866665 67788999988777543
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.97 E-value=1.8e-08 Score=108.22 Aligned_cols=182 Identities=16% Similarity=0.321 Sum_probs=128.5
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
..++.+|..+.++|||+. .+-+.+.+..|...|.+|.+.-+ | -+||.|. + +
T Consensus 92 ~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~-------D------eyiAsvs-~----g---------- 142 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNT-------D------EYIASVS-D----G---------- 142 (673)
T ss_pred eeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCC-------c------ceeEEec-c----C----------
Confidence 556778888889999999 46677777778888877776532 2 3566553 1 1
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC--eEEEEEecC--cE-EEEEe-CCeEEEEeCCCCceeEEE
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS--TVYMVRCSP--RI-VAVGL-AAQIYCFDALTLESKFSV 234 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s--~V~sV~~s~--~~-LaV~~-~~~I~i~D~~t~e~~~tl 234 (627)
+-|.|-.++|+..-.++..++ .|+-+++++ |. |.++. ++.|++||+..+...+..
T Consensus 143 -------------------Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~ 203 (673)
T KOG4378|consen 143 -------------------GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA 203 (673)
T ss_pred -------------------CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch
Confidence 238888899988888888764 677788876 44 44444 557999999988877665
Q ss_pred E-cCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhh
Q 046828 235 L-TYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLA 313 (627)
Q Consensus 235 ~-~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~ 313 (627)
. -|..|. +-+.+++.. +-++
T Consensus 204 ~~~HsAP~--------------------~gicfspsn---------------------------e~l~------------ 224 (673)
T KOG4378|consen 204 SEAHSAPC--------------------RGICFSPSN---------------------------EALL------------ 224 (673)
T ss_pred hhhccCCc--------------------CcceecCCc---------------------------cceE------------
Confidence 4 355541 112223211 1000
Q ss_pred cceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEE
Q 046828 314 AGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCF 393 (627)
Q Consensus 314 ~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laF 393 (627)
.+.+.|..|.+||+.+.+....+.. ..|.++|+|
T Consensus 225 ---------------------------------------------vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf 258 (673)
T KOG4378|consen 225 ---------------------------------------------VSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAF 258 (673)
T ss_pred ---------------------------------------------EEecccceEEEeecccccccceeee-cCCcceeee
Confidence 0235788999999998877666653 569999999
Q ss_pred CCCCCEEEEEeCCCCEEEEEeCC
Q 046828 394 DRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 394 spdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
.++|.+|+.|+.+|. |.-||+.
T Consensus 259 ~~~G~~L~aG~s~G~-~i~YD~R 280 (673)
T KOG4378|consen 259 SECGTYLCAGNSKGE-LIAYDMR 280 (673)
T ss_pred cCCceEEEeecCCce-EEEEecc
Confidence 999999999999998 6789986
No 164
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=6.3e-07 Score=99.20 Aligned_cols=94 Identities=11% Similarity=0.136 Sum_probs=57.4
Q ss_pred eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC--CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG--NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG--t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
.|.++|+.+++. ..+..+...+...+|+|||+.|+..+.++ ..|.+||+. .+ ....+
T Consensus 315 ~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~-------~~-------------~~~~l 373 (435)
T PRK05137 315 QLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD-------GS-------------GERIL 373 (435)
T ss_pred eEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECC-------CC-------------ceEec
Confidence 577778766543 33333445566788999999999887643 235666653 11 11222
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCe----EEEEEcCCCCC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGT----CHIFVLTPFGG 483 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgT----vhIw~i~~~gg 483 (627)
..+. .+.+++|||||++|+..+.++. ..||.++..++
T Consensus 374 t~~~---~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 374 TSGF---LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred cCCC---CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 2222 3678999999999998776431 34555544443
No 165
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=2.4e-09 Score=124.35 Aligned_cols=101 Identities=16% Similarity=0.173 Sum_probs=78.9
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCC--CeEEEEECCCC-CEEEEEeCCC--CEEEEEeCCCCCCCCCCCCCccccCCC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTS--PISALCFDRSG-TLLVTASIHG--NNINIFRIMPSSSKGRSGSASQTYDWT 434 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~--~Is~laFspdG-~lLaTaS~dG--t~I~Vwdi~p~~~~~~~g~~~~~~~~~ 434 (627)
++..+|.+.|||++..+++..|.-|.. .++.|+|+|++ +.|++|++|- -+|.+||++ ...
T Consensus 179 S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR-~as-------------- 243 (1049)
T KOG0307|consen 179 SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR-FAS-------------- 243 (1049)
T ss_pred ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc-ccC--------------
Confidence 456788999999999998888887754 48899999986 5677777764 369999986 221
Q ss_pred CceeEEEEEeecCCcCcEEEEEEccC-CCEEEEEeCCCeEEEEEcCC
Q 046828 435 SSHVHLYKLHRGMTSAVIQDICFSHY-SQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 435 ~~~~~l~~l~rG~t~a~I~sIaFSpD-g~~Las~S~dgTvhIw~i~~ 480 (627)
..+..+ +||..+ |.+++|++. .++|++++.|+.|.+|+.+.
T Consensus 244 ---sP~k~~-~~H~~G-ilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 244 ---SPLKIL-EGHQRG-ILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred ---Cchhhh-cccccc-eeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 123333 677654 999999995 49999999999999999886
No 166
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.95 E-value=1e-08 Score=112.52 Aligned_cols=102 Identities=13% Similarity=0.234 Sum_probs=76.4
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
.+.+|-+|+|||+.+.+....|.+|+..|..++|||||+++||...||+ ||||+-. ++. ..
T Consensus 695 ~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Pr-------s~e-----------~p 755 (1012)
T KOG1445|consen 695 VASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPR-------SRE-----------QP 755 (1012)
T ss_pred hhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCC-------CCC-----------Cc
Confidence 3468899999999999999999999999999999999999999999998 7999853 111 13
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCC----eEEEEEcCCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRG----TCHIFVLTPF 481 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dg----TvhIw~i~~~ 481 (627)
+|+- .|....+=-.|.|--||++|++.+.|. -|.+|+-...
T Consensus 756 v~Eg-~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 756 VYEG-KGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred cccC-CCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 3332 121111224577999999999988765 3556665443
No 167
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.94 E-value=1.8e-08 Score=107.40 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=75.2
Q ss_pred CCeEEEEECCCCeE-EEEeccCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 364 AGMVVVKDIVSRSV-ISQFRAHTSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 364 dG~V~IwD~~s~~~-l~~~~aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
=|...+||+.++.. ...++-|...|..|+|+|- -.+|||||.|+| .+|||+..- .+. .+. .++
T Consensus 300 ~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T-~kIWD~R~l-----~~K--------~sp-~ls 364 (498)
T KOG4328|consen 300 VGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT-AKIWDLRQL-----RGK--------ASP-FLS 364 (498)
T ss_pred ccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc-eeeeehhhh-----cCC--------CCc-cee
Confidence 35788999988654 7778889999999999995 568999999998 699998622 111 000 233
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
.+. |+ -.|.+..|||++--|++.+.|.+|+||+..
T Consensus 365 t~~--Hr-rsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 365 TLP--HR-RSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ccc--cc-ceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 331 22 249999999988889999999999999985
No 168
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.94 E-value=1.5e-06 Score=89.53 Aligned_cols=119 Identities=17% Similarity=0.258 Sum_probs=78.7
Q ss_pred CCCe-EEEEECCCCeEEEEeccC--CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCC-CCccccC-C-C--
Q 046828 363 IAGM-VVVKDIVSRSVISQFRAH--TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSG-SASQTYD-W-T-- 434 (627)
Q Consensus 363 ~dG~-V~IwD~~s~~~l~~~~aH--~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g-~~~~~~~-~-~-- 434 (627)
..|+ |||||..+++.+..|+.- ...|.+|+|||++.+||.+|++|| ++||.++..... ... +....-. + +
T Consensus 201 tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~-~~~~SSl~~~~~~lpky 278 (346)
T KOG2111|consen 201 TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENT-EDESSSLSFKRLVLPKY 278 (346)
T ss_pred cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCC-ccccccccccccccchh
Confidence 4444 799999999999999843 356999999999999999999999 799998743211 010 0000000 0 0
Q ss_pred -CceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCee
Q 046828 435 -SSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGET 485 (627)
Q Consensus 435 -~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~ 485 (627)
.+.|-+.+++- ......-++|-.+..-+++...||+-+-+.+.+..+..
T Consensus 279 ~~S~wS~~~f~l--~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~~~g~ 328 (346)
T KOG2111|consen 279 FSSEWSFAKFQL--PQGTQCIIAFGSETNTVIAICADGSYYKFKFDPKNGGE 328 (346)
T ss_pred cccceeEEEEEc--cCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccccccc
Confidence 01122222221 12235678999997778888889999988888764443
No 169
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.93 E-value=1e-08 Score=107.06 Aligned_cols=113 Identities=17% Similarity=0.262 Sum_probs=83.7
Q ss_pred CCCCCCeEEEEECCCCeE---EEEeccCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 360 DTDIAGMVVVKDIVSRSV---ISQFRAHTSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~---l~~~~aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
+++..+.|++|...++.- ..-|.+|+..|-.|+|||. ..+||++|-||+ |||||+...+..
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~~~-------------- 293 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGPKK-------------- 293 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCCcc--------------
Confidence 456677899998887642 2346779999999999996 468999999998 899999722110
Q ss_pred ceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCee---ecccccc
Q 046828 436 SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGET---VLQIQNS 492 (627)
Q Consensus 436 ~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~---~~~~h~s 492 (627)
..+.. ..| ++.|+-|+|+.+-.+||+|++|||++||+|..+.... .+..|..
T Consensus 294 --~~~~~--kAh-~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~ 348 (440)
T KOG0302|consen 294 --AAVST--KAH-NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA 348 (440)
T ss_pred --ceeEe--ecc-CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence 02222 223 3479999999999999999999999999998775431 3445543
No 170
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.93 E-value=2.6e-08 Score=102.65 Aligned_cols=100 Identities=20% Similarity=0.291 Sum_probs=83.9
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
++.-|.|+|.|+.+++....+.+|...|+.|.|.|+- ++|++||.|-. ||+|+|.. . .+
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~s-vRlwnI~~-------~------------~C 170 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHS-VRLWNIQT-------D------------VC 170 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCce-EEEEeccC-------C------------eE
Confidence 4577999999999999999999999999999999975 79999999965 89999972 2 13
Q ss_pred EEEE--eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 440 LYKL--HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 440 l~~l--~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
+.-+ ..||. ..|.++.|++||.+||+++.|-++.+|+++..
T Consensus 171 v~VfGG~egHr-deVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 171 VAVFGGVEGHR-DEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred EEEeccccccc-CcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 3333 23442 35999999999999999999999999999854
No 171
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.92 E-value=9.3e-08 Score=107.80 Aligned_cols=98 Identities=14% Similarity=0.223 Sum_probs=78.0
Q ss_pred CCCeEEEEECC-CCeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 363 IAGMVVVKDIV-SRSVISQFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 363 ~dG~V~IwD~~-s~~~l~~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
.|.+|+||... ...++..+..+...|.+++|||.- ..+|++..+|+ |.|||+..... + .+
T Consensus 418 gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~iWDLl~~~~----~-------------Pv 479 (555)
T KOG1587|consen 418 GDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDIWDLLQDDE----E-------------PV 479 (555)
T ss_pred ccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eehhhhhcccc----C-------------Cc
Confidence 39999999988 778888999999999999999964 78999999998 89999963221 1 11
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.....+ ......+.|+++|+.||+|...|++|+|++.+
T Consensus 480 ~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 480 LSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 111122 23467888999999999999999999999964
No 172
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.91 E-value=1.9e-08 Score=105.67 Aligned_cols=102 Identities=12% Similarity=0.147 Sum_probs=79.3
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
+++.|.+|.|||+.+++.+.++. |..-|.+++|+.||.+|+|++.|.. |||||.. +|. .
T Consensus 149 sag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKk-vRv~dpr-------~~~------------~ 207 (472)
T KOG0303|consen 149 SAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKK-VRVIDPR-------RGT------------V 207 (472)
T ss_pred hccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccce-eEEEcCC-------CCc------------E
Confidence 35678999999999999999988 9999999999999999999999987 8999975 342 3
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeC---CCeEEEEEcCCCCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSS---RGTCHIFVLTPFGG 483 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~---dgTvhIw~i~~~gg 483 (627)
+.+. .+|..++-+..-|-.+|+.+-+|-+ +..+-||+-+....
T Consensus 208 v~e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~e 253 (472)
T KOG0303|consen 208 VSEG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEE 253 (472)
T ss_pred eeec-ccccCCCcceeEEeccCceeeeccccccccceeccCcccccC
Confidence 3433 5666667777889999994444433 45678887654433
No 173
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.91 E-value=7.2e-08 Score=98.05 Aligned_cols=175 Identities=19% Similarity=0.324 Sum_probs=115.0
Q ss_pred CcEEEEEECCCCce--EEE--EecCCeEEEEEecC---cEEEE-EeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCc
Q 046828 179 PTAVRFYSLRSHNY--VHV--LRFRSTVYMVRCSP---RIVAV-GLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGV 250 (627)
Q Consensus 179 ~~tV~lwdl~t~~~--V~t--L~f~s~V~sV~~s~---~~LaV-~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~ 250 (627)
++|..|||++++.. |+| +-+..+|++|+|.+ +++|+ |.++.|++||++.++.-..+-..|.|.
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~--------- 242 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPS--------- 242 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCC---------
Confidence 58899999999843 554 34778999999986 56664 567799999999987544443333320
Q ss_pred ccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeee
Q 046828 251 NIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRY 330 (627)
Q Consensus 251 ~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y 330 (627)
...+ -|+....++- .++
T Consensus 243 ---~pLl-----RLswnkqDpn---------------------------ymA---------------------------- 259 (364)
T KOG0290|consen 243 ---TPLL-----RLSWNKQDPN---------------------------YMA---------------------------- 259 (364)
T ss_pred ---Ccce-----eeccCcCCch---------------------------HHh----------------------------
Confidence 1111 1222221110 000
Q ss_pred eccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC-eEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCC
Q 046828 331 YQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR-SVISQFRAHTSPISALCFDR-SGTLLVTASIHGN 408 (627)
Q Consensus 331 ~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt 408 (627)
+-+.....|.|.|++.. .+++.++.|...|+.|+|.| +...|+||++|-.
T Consensus 260 ----------------------------Tf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q 311 (364)
T KOG0290|consen 260 ----------------------------TFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ 311 (364)
T ss_pred ----------------------------hhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce
Confidence 01124457889998864 67999999999999999999 5678999999976
Q ss_pred EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEcc-CCCEEEEEeCC
Q 046828 409 NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSH-YSQWIAIVSSR 470 (627)
Q Consensus 409 ~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~d 470 (627)
.-|||+...+.. .+ ......|.. .+.|..|.|++ ...||+++..+
T Consensus 312 -aliWDl~q~~~~--~~---------~dPilay~a-----~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 312 -ALIWDLQQMPRE--NG---------EDPILAYTA-----GGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred -EEEEeccccccc--CC---------CCchhhhhc-----cceeeeeeecccCCCEEEEEecC
Confidence 789999632210 01 001122321 24699999995 78899998755
No 174
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.90 E-value=5.9e-09 Score=114.31 Aligned_cols=98 Identities=21% Similarity=0.300 Sum_probs=81.7
Q ss_pred CCCCCeEEEEECCCC-------eEEEEeccCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccC
Q 046828 361 TDIAGMVVVKDIVSR-------SVISQFRAHTSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYD 432 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~-------~~l~~~~aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~ 432 (627)
+..||.|+||.+..+ ++-..+.+|...|.+|.|+|= ...||++|.|-| |++||+. ++
T Consensus 646 a~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T-i~lWDl~-------~~------- 710 (1012)
T KOG1445|consen 646 ATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST-IELWDLA-------NA------- 710 (1012)
T ss_pred cccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce-eeeeehh-------hh-------
Confidence 468999999998754 456788999999999999994 578999999988 8999996 22
Q ss_pred CCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 433 WTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 433 ~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.+|-...||+. .|.+|+|||||+.+|+...||+++||+-..
T Consensus 711 ------~~~~~l~gHtd-qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 711 ------KLYSRLVGHTD-QIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred ------hhhheeccCcC-ceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 33433468875 599999999999999999999999998654
No 175
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=5.3e-08 Score=106.70 Aligned_cols=121 Identities=16% Similarity=0.172 Sum_probs=88.9
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
....|.|+++...+...-|+--.+-|.++.|.|.--+|..|+.. .|||||+. . . ..+.+
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~--~vRiYdL~-k------q------------elvKk 602 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR--SVRIYDLS-K------Q------------ELVKK 602 (733)
T ss_pred CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc--ceEEEehh-H------H------------HHHHH
Confidence 44579999999888778887777789999999999999999876 38999985 1 1 13344
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe-eecccccccccCCCCCCCccCC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE-TVLQIQNSHVDRPTLSPVLSVP 506 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~-~~~~~h~s~v~~~~~~p~~~~~ 506 (627)
|..|.. .|..++.+|.|.-|++++.|+.+-.||+.-...+ .+++.|...+....+-+..+|+
T Consensus 603 L~tg~k--wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLf 665 (733)
T KOG0650|consen 603 LLTGSK--WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLF 665 (733)
T ss_pred HhcCCe--eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccccee
Confidence 444432 4999999999999999999999999999865433 3566776554443333333443
No 176
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.87 E-value=2.4e-08 Score=100.39 Aligned_cols=70 Identities=21% Similarity=0.260 Sum_probs=55.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI 466 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las 466 (627)
.|+-+..-||++.||||+=||+ ||||.-. +.. .+.-|. -| .+.|++++|+||...+|.
T Consensus 253 Gv~gvrIRpD~KIlATAGWD~R-iRVyswr-------tl~------------pLAVLk-yH-sagvn~vAfspd~~lmAa 310 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGWDHR-IRVYSWR-------TLN------------PLAVLK-YH-SAGVNAVAFSPDCELMAA 310 (323)
T ss_pred CccceEEccCCcEEeecccCCc-EEEEEec-------cCC------------chhhhh-hh-hcceeEEEeCCCCchhhh
Confidence 3667778899999999999998 8999875 221 222221 12 367999999999999999
Q ss_pred EeCCCeEEEEEc
Q 046828 467 VSSRGTCHIFVL 478 (627)
Q Consensus 467 ~S~dgTvhIw~i 478 (627)
+|.|++|-+|++
T Consensus 311 askD~rISLWkL 322 (323)
T KOG0322|consen 311 ASKDARISLWKL 322 (323)
T ss_pred ccCCceEEeeec
Confidence 999999999986
No 177
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.84 E-value=1e-06 Score=97.55 Aligned_cols=94 Identities=12% Similarity=0.140 Sum_probs=56.4
Q ss_pred eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC--CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG--NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG--t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
.|.++|+.+++.. .+..+......++|+|||+.|+..+.++ ..|.+||+. ++. ...+
T Consensus 317 ~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~-------~g~-------------~~~L 375 (433)
T PRK04922 317 QIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS-------TGS-------------VRTL 375 (433)
T ss_pred eEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECC-------CCC-------------eEEC
Confidence 3555666555432 2222223345689999999999876543 247888875 221 2233
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCC-CeEEEEEcCCCCC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSR-GTCHIFVLTPFGG 483 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~d-gTvhIw~i~~~gg 483 (627)
..+. .....+|+|||++|+..+.+ |.-+||.+...++
T Consensus 376 t~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 376 TPGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 3332 24567999999999887764 4555665555444
No 178
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.83 E-value=1.3e-07 Score=100.82 Aligned_cols=130 Identities=19% Similarity=0.257 Sum_probs=96.6
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCeEEE-EeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCC
Q 046828 58 SHELKDQVLWSSFDKLELSPSSFKHVLL-LGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSH 136 (627)
Q Consensus 58 ~~~~~d~V~wa~Fd~l~~~~~~~~~vl~-~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~r 136 (627)
...|.|.|+...|+++ .+.||. .+.|+++.+||++.++ ....+..|.+.|.++++-|.-
T Consensus 239 ~~gHTdavl~Ls~n~~------~~nVLaSgsaD~TV~lWD~~~g~-p~~s~~~~~k~Vq~l~wh~~~------------- 298 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRN------FRNVLASGSADKTVKLWDVDTGK-PKSSITHHGKKVQTLEWHPYE------------- 298 (463)
T ss_pred cccchHHHHHHHhccc------cceeEEecCCCceEEEEEcCCCC-cceehhhcCCceeEEEecCCC-------------
Confidence 3467888888888764 366766 5558899999999855 567777889999999987653
Q ss_pred CEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCC-CceEEEEecCCeEEEEEecC---cEE
Q 046828 137 PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRS-HNYVHVLRFRSTVYMVRCSP---RIV 212 (627)
Q Consensus 137 pLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t-~~~V~tL~f~s~V~sV~~s~---~~L 212 (627)
|.+++.+ ..+++|.++|+|. .+.=...+|.+.|-.|.+++ ...
T Consensus 299 p~~LLsG---------------------------------s~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f 345 (463)
T KOG0270|consen 299 PSVLLSG---------------------------------SYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSF 345 (463)
T ss_pred ceEEEec---------------------------------cccceEEeeeccCccccCceEEeccceEEEEecCCCceeE
Confidence 5544321 1358899999995 33445678999999999976 455
Q ss_pred EEEe-CCeEEEEeCCCC-ceeEEEEcCCCC
Q 046828 213 AVGL-AAQIYCFDALTL-ESKFSVLTYPVP 240 (627)
Q Consensus 213 aV~~-~~~I~i~D~~t~-e~~~tl~~~p~~ 240 (627)
.+++ ++.+|-||++.. +.++++..|..+
T Consensus 346 ~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ 375 (463)
T KOG0270|consen 346 FVSTDDGTVYYFDIRNPGKPVWTLKAHDDE 375 (463)
T ss_pred EEecCCceEEeeecCCCCCceeEEEeccCC
Confidence 5554 568999999986 788888887553
No 179
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.81 E-value=2.2e-07 Score=103.35 Aligned_cols=103 Identities=20% Similarity=0.238 Sum_probs=72.7
Q ss_pred eEEEEeccCCCCeEEEEECCCCC---EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccC---C--CCceeEEE------
Q 046828 376 SVISQFRAHTSPISALCFDRSGT---LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYD---W--TSSHVHLY------ 441 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~---lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~---~--~~~~~~l~------ 441 (627)
+.++.+.+|+..|..|+|...|. +||++|.|.. ||||.+.+.... ++-..+.. . ......+.
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~y-IRiW~i~~~~~~---~~~~~e~~~t~~~~~~~f~~l~~i~~~i 257 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRY-IRIWRIVLGDDE---DSNEREDSLTTLSNLPVFMILEEIQYRI 257 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceE-EEEEEEEecCCc---cccccccccccccCCceeeeeeeEEEEE
Confidence 56889999999999999998766 8999999965 899998643311 00000000 0 00111121
Q ss_pred ---EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 442 ---KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 442 ---~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
.+.-||+. .|+++-|.|++..|.++|.|.|+.||.-....|
T Consensus 258 s~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tG 301 (764)
T KOG1063|consen 258 SFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTG 301 (764)
T ss_pred ehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccc
Confidence 22348865 599999999999999999999999999776643
No 180
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.78 E-value=1.9e-07 Score=103.12 Aligned_cols=100 Identities=15% Similarity=0.112 Sum_probs=68.8
Q ss_pred CCCeEEEEECCCC--eEEEEeccCCCC--eEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 363 IAGMVVVKDIVSR--SVISQFRAHTSP--ISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 363 ~dG~V~IwD~~s~--~~l~~~~aH~~~--Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
.|+.|..||+.+. .++..|.+|... -..=..+|||.+|++|+.|++ ..||.+. ++..
T Consensus 291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~-ayiw~vs-~~e~----------------- 351 (720)
T KOG0321|consen 291 TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQ-AYIWVVS-SPEA----------------- 351 (720)
T ss_pred cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcc-eeeeeec-CccC-----------------
Confidence 4888999998765 345555555321 112247999999999999998 6999985 3221
Q ss_pred EEEEEeecCCcCcEEEEEEcc--CCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 439 HLYKLHRGMTSAVIQDICFSH--YSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSp--Dg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
--.+.-||+. .|.+++|.| ++. +|++++|-+++||++..+...
T Consensus 352 -~~~~l~Ght~-eVt~V~w~pS~~t~-v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 352 -PPALLLGHTR-EVTTVRWLPSATTP-VATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred -ChhhhhCcce-EEEEEeeccccCCC-ceeeccCcceEEEeccCchhh
Confidence 1112357765 489999977 555 455599999999999765433
No 181
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.78 E-value=1.9e-07 Score=103.09 Aligned_cols=122 Identities=17% Similarity=0.144 Sum_probs=79.7
Q ss_pred CCCCCeEEEEECCCCeE------EEE--eccC---CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcc
Q 046828 361 TDIAGMVVVKDIVSRSV------ISQ--FRAH---TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQ 429 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~------l~~--~~aH---~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~ 429 (627)
+..|+.|+|||+..... +.. +.-| .-.+.+|..+..|++|.....|++ |..|++. .... +
T Consensus 236 ga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s-Iy~ynm~-s~s~---s---- 306 (720)
T KOG0321|consen 236 GAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS-IYFYNMR-SLSI---S---- 306 (720)
T ss_pred cCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc-EEEEecc-ccCc---C----
Confidence 44699999999987532 111 2223 224888999999998877777887 8999985 2111 0
Q ss_pred ccCCCCceeEEEEEeecCCcCcE-EEEEEccCCCEEEEEeCCCeEEEEEcCCCCCee-ecccccccccCCCCCC
Q 046828 430 TYDWTSSHVHLYKLHRGMTSAVI-QDICFSHYSQWIAIVSSRGTCHIFVLTPFGGET-VLQIQNSHVDRPTLSP 501 (627)
Q Consensus 430 ~~~~~~~~~~l~~l~rG~t~a~I-~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~-~~~~h~s~v~~~~~~p 501 (627)
.+. ++.|+-...+ ..-..|||+++|++++.|+-..||.++.....+ .+..|..+|....+.|
T Consensus 307 ---------P~~-~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 307 ---------PVA-EFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred ---------chh-hccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence 111 1123222221 223579999999999999999999998876555 4556766665544433
No 182
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=6.1e-06 Score=91.29 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=47.3
Q ss_pred EEEEECCCCCEEEEEeCCCC--EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE
Q 046828 389 SALCFDRSGTLLVTASIHGN--NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI 466 (627)
Q Consensus 389 s~laFspdG~lLaTaS~dGt--~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las 466 (627)
...+|+|||++||..+.++. .|.+||+. ++. ...+..+ ......+|+|||++|+.
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~-------~g~-------------~~~lt~~---~~~~~p~~spdg~~l~~ 387 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGGAFKLYVQDLA-------TGQ-------------VTALTDT---TRDESPSFAPNGRYILY 387 (427)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEECC-------CCC-------------eEEccCC---CCccCceECCCCCEEEE
Confidence 45689999999998876652 47888875 221 2222222 12467899999999998
Q ss_pred EeCCC-eEEEEEcCCCCC
Q 046828 467 VSSRG-TCHIFVLTPFGG 483 (627)
Q Consensus 467 ~S~dg-TvhIw~i~~~gg 483 (627)
.+.++ .-+|+-+...+.
T Consensus 388 ~~~~~g~~~l~~~~~~g~ 405 (427)
T PRK02889 388 ATQQGGRSVLAAVSSDGR 405 (427)
T ss_pred EEecCCCEEEEEEECCCC
Confidence 88655 445666554443
No 183
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=1.7e-07 Score=99.30 Aligned_cols=74 Identities=23% Similarity=0.355 Sum_probs=61.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEE
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIA 465 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~La 465 (627)
..|++|+.++||+++|-|+.+|. |-|++.. .. ++++-.++-|- ..|++|.|+||.++++
T Consensus 282 ~siSsl~VS~dGkf~AlGT~dGs-Vai~~~~-~l------------------q~~~~vk~aH~-~~VT~ltF~Pdsr~~~ 340 (398)
T KOG0771|consen 282 KSISSLAVSDDGKFLALGTMDGS-VAIYDAK-SL------------------QRLQYVKEAHL-GFVTGLTFSPDSRYLA 340 (398)
T ss_pred CcceeEEEcCCCcEEEEeccCCc-EEEEEec-ee------------------eeeEeehhhhe-eeeeeEEEcCCcCccc
Confidence 46999999999999999999998 6899875 21 24555555443 3599999999999999
Q ss_pred EEeCCCeEEEEEcCC
Q 046828 466 IVSSRGTCHIFVLTP 480 (627)
Q Consensus 466 s~S~dgTvhIw~i~~ 480 (627)
..|.+.+++|..|.-
T Consensus 341 svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 341 SVSSDNEAAVTKLAV 355 (398)
T ss_pred ccccCCceeEEEEee
Confidence 999999999999864
No 184
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.73 E-value=6.9e-08 Score=109.02 Aligned_cols=98 Identities=17% Similarity=0.212 Sum_probs=78.1
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEE-EEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLL-VTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lL-aTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
+..+-.+.+|++.++..++.+.+|..++..|.|+|=...+ .+|..||. +.|||+- .|. ..+
T Consensus 371 ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs-t~iwdi~-------eg~----------pik 432 (1113)
T KOG0644|consen 371 ARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS-TIIWDIW-------EGI----------PIK 432 (1113)
T ss_pred eeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCc-eEeeecc-------cCC----------cce
Confidence 3456678899999999999999999999999999966555 46889998 6899995 232 124
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.|. .|+ .++.+-+||+||+.++...+.|-+.|+....
T Consensus 433 ~y~--~gh--~kl~d~kFSqdgts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 433 HYF--IGH--GKLVDGKFSQDGTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred eee--ccc--ceeeccccCCCCceEecCCCCCceEEeccCC
Confidence 443 453 4689999999999999999999999887644
No 185
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=5.3e-08 Score=99.90 Aligned_cols=121 Identities=20% Similarity=0.336 Sum_probs=83.3
Q ss_pred cCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc--
Q 046828 359 SDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS-- 436 (627)
Q Consensus 359 ~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~-- 436 (627)
+.+..+|.|.|||+.+...-..|.+|..||.+|+||+||++|+|+|.|-. |.+||+. .|+..+..-.++.
T Consensus 39 AvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s-i~lwDl~-------~gs~l~rirf~spv~ 110 (405)
T KOG1273|consen 39 AVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWS-IKLWDLL-------KGSPLKRIRFDSPVW 110 (405)
T ss_pred eeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCce-eEEEecc-------CCCceeEEEccCccc
Confidence 35678999999999999988899999999999999999999999999975 8999996 2332210000000
Q ss_pred ---------eeE----------EEEEee-----------cCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeee
Q 046828 437 ---------HVH----------LYKLHR-----------GMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETV 486 (627)
Q Consensus 437 ---------~~~----------l~~l~r-----------G~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~ 486 (627)
... +..+-. |.-+..-....|.+-|+++.+|+.+|.++|++.++......
T Consensus 111 ~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas 190 (405)
T KOG1273|consen 111 GAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVAS 190 (405)
T ss_pred eeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeee
Confidence 000 011100 00000011224778899999999999999999988755443
Q ss_pred c
Q 046828 487 L 487 (627)
Q Consensus 487 ~ 487 (627)
+
T Consensus 191 ~ 191 (405)
T KOG1273|consen 191 F 191 (405)
T ss_pred e
Confidence 3
No 186
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=4.4e-07 Score=93.04 Aligned_cols=40 Identities=15% Similarity=0.385 Sum_probs=36.2
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
+.+..|..|..+|-.++|+-.|+.|++.++||. +|+|...
T Consensus 279 ~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~-VRLWkan 318 (361)
T KOG2445|consen 279 EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC-VRLWKAN 318 (361)
T ss_pred EEeeeccCCCCceEEEEEeeeeeEEeecCCCce-eeehhhh
Confidence 457788999999999999999999999999998 7999753
No 187
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=2.5e-06 Score=97.40 Aligned_cols=99 Identities=19% Similarity=0.316 Sum_probs=77.2
Q ss_pred CCCCCCeEEEEE-CC-CC--eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 360 DTDIAGMVVVKD-IV-SR--SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 360 ~~~~dG~V~IwD-~~-s~--~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
++..||.|.||. +. ++ .....|.-|..+|.+|+|++||.+|.+|+..|- +-+|++. ++.
T Consensus 222 a~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~V-Lv~Wq~~-------T~~--------- 284 (792)
T KOG1963|consen 222 AGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGV-LVLWQLE-------TGK--------- 284 (792)
T ss_pred EeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceE-EEEEeec-------CCC---------
Confidence 466789999995 33 12 345678889999999999999999999999995 7899986 221
Q ss_pred ceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 436 SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 436 ~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+.|-++ .+.|..|.+|||+...+..-.|..||+-....-
T Consensus 285 -kqfLPRL-----gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 285 -KQFLPRL-----GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred -ccccccc-----CCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence 0122221 357999999999999999999999999987543
No 188
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.70 E-value=1.6e-06 Score=85.78 Aligned_cols=90 Identities=17% Similarity=0.347 Sum_probs=69.3
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC---CCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH---GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d---Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
.+..|.|||++ .+.+..|. ..++..|.|||+|++||+|+.+ |. |.+||+. . . ..
T Consensus 81 ~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~-~------~------------~~ 137 (194)
T PF08662_consen 81 MPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVR-K------K------------KK 137 (194)
T ss_pred CCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE-EEEEECC-C------C------------EE
Confidence 45689999997 66677775 5678999999999999999754 55 8999986 1 1 24
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeC------CCeEEEEEcC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSS------RGTCHIFVLT 479 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~------dgTvhIw~i~ 479 (627)
+.+.. ...+..++|||||++|++++. |..++||+..
T Consensus 138 i~~~~----~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 138 ISTFE----HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred eeccc----cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 44432 223789999999999999875 7889999974
No 189
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=6.1e-08 Score=105.74 Aligned_cols=110 Identities=22% Similarity=0.307 Sum_probs=87.2
Q ss_pred cCCCCCCeEEEEECCC--------CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccc
Q 046828 359 SDTDIAGMVVVKDIVS--------RSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQT 430 (627)
Q Consensus 359 ~~~~~dG~V~IwD~~s--------~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~ 430 (627)
..++++|++.+|.++. -+++.+|++|..||-|++..+.|..+.+|+.||+ ||.|.+-++ .....+
T Consensus 310 it~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~-I~~w~~p~n------~dp~ds 382 (577)
T KOG0642|consen 310 ITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT-IRCWNLPPN------QDPDDS 382 (577)
T ss_pred EEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce-eeeeccCCC------CCcccc
Confidence 3578999999999932 2689999999999999999999999999999998 899988322 211111
Q ss_pred cCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 431 YDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 431 ~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
+++. -+....-||+.+ |+.+++|.....|+++|.|||+++|....
T Consensus 383 ~dp~----vl~~~l~Ghtda-vw~l~~s~~~~~Llscs~DgTvr~w~~~~ 427 (577)
T KOG0642|consen 383 YDPS----VLSGTLLGHTDA-VWLLALSSTKDRLLSCSSDGTVRLWEPTE 427 (577)
T ss_pred cCcc----hhccceeccccc-eeeeeecccccceeeecCCceEEeeccCC
Confidence 2211 233334699875 99999999999999999999999998754
No 190
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.67 E-value=3.9e-06 Score=88.85 Aligned_cols=305 Identities=15% Similarity=0.177 Sum_probs=164.8
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC--------ceEEeeecCCceEEEEEeeCCCCCCCCCCc
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN--------VSELVSRRDDPVTFLQMQPLPAKSDGQEGF 132 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~--------~~ells~~dG~V~~v~~lp~p~~~~~~D~f 132 (627)
.+++|+-+-|-+.. ..++...|-|.-+++|-++.... ..-.|++|++.|.++++.|+-
T Consensus 12 ~~~pv~s~dfq~n~-----~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g--------- 77 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNS-----LNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG--------- 77 (434)
T ss_pred CCCceEEEEeccCc-----ccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc---------
Confidence 56778888886532 13788899999999999975321 134567899999999998764
Q ss_pred CCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECC--------C-----Cc---eEEEE
Q 046828 133 RNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLR--------S-----HN---YVHVL 196 (627)
Q Consensus 133 ~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~--------t-----~~---~V~tL 196 (627)
.|||.. .|+ +.|.+|-.. + .+ ..+.+
T Consensus 78 ----elLASg-~D~---------------------------------g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~l 119 (434)
T KOG1009|consen 78 ----ELLASG-GDG---------------------------------GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVL 119 (434)
T ss_pred ----Ceeeec-CCC---------------------------------ceEEEEEecCcCCccccchhhhCccceEEEEEe
Confidence 455532 121 234444332 3 11 12344
Q ss_pred e-cCCeEEEEEecC--cEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCC
Q 046828 197 R-FRSTVYMVRCSP--RIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNN 270 (627)
Q Consensus 197 ~-f~s~V~sV~~s~--~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~ 270 (627)
. ++..||++++++ ..|+++ .+..+++||+..+..+..+.+|..- +.-+|+.| .++|.-+.+
T Consensus 120 r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y-------------vqgvawDpl~qyv~s~s~d 186 (434)
T KOG1009|consen 120 RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY-------------VQGVAWDPLNQYVASKSSD 186 (434)
T ss_pred cccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc-------------cceeecchhhhhhhhhccC
Confidence 4 456999999987 566655 5778999999999988887776432 11244444 445443322
Q ss_pred CCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCC---cceeEEeeeeccccCCCCCCCccCCC
Q 046828 271 PLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGD---MGYKTLSRYYQDFIPDGSSSPVSSNS 347 (627)
Q Consensus 271 ~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~---~g~~~~s~y~~~~~p~g~~~~~s~~~ 347 (627)
.-. +. ++. .-..++.... ...+.+. .+.-...++|.+ .+-..+....
T Consensus 187 r~~----~~--~~~-----------~~~~~~~~~~---------~~~m~~~~~~~~e~~s~rLfhD----eTlksFFrRl 236 (434)
T KOG1009|consen 187 RHP----EG--FSA-----------KLKQVIKRHG---------LDIMPAKAFNEREGKSTRLFHD----ETLKSFFRRL 236 (434)
T ss_pred ccc----ce--eee-----------eeeeeeeeee---------eeEeeecccCCCCcceeeeeec----Cchhhhhhhc
Confidence 200 00 000 0000000000 0000000 000111222221 1111111111
Q ss_pred cccc-Cccc-ccccCCCC-----CCeEEEEECCC-CeEEEEeccCCCCeEEEEEC------------------CCCCEEE
Q 046828 348 SWKA-GRNA-SHSSDTDI-----AGMVVVKDIVS-RSVISQFRAHTSPISALCFD------------------RSGTLLV 401 (627)
Q Consensus 348 ~~~~-g~~~-~~~~~~~~-----dG~V~IwD~~s-~~~l~~~~aH~~~Is~laFs------------------pdG~lLa 401 (627)
.|.+ |.+. +-+..... -....+++-.. .++++++..-..+..+++|+ |-+..+|
T Consensus 237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 1110 1110 00000011 22334554432 35677777766677777665 3466788
Q ss_pred EEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 402 TASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 402 TaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.|..+. +.|||... - ..++.+ .+.+-+.|++|+||+||..|+++|.||-+-+--+++.
T Consensus 317 iAt~~s--vyvydtq~-------~------------~P~~~v-~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 317 IATKNS--VYVYDTQT-------L------------EPLAVV-DNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred Eeecce--EEEecccc-------c------------cceEEE-eeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 888873 78999751 1 133333 3445567999999999999999999999888777654
Q ss_pred C
Q 046828 482 G 482 (627)
Q Consensus 482 g 482 (627)
+
T Consensus 375 e 375 (434)
T KOG1009|consen 375 E 375 (434)
T ss_pred h
Confidence 3
No 191
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.65 E-value=4.7e-06 Score=92.26 Aligned_cols=96 Identities=16% Similarity=0.221 Sum_probs=60.3
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC-CC-EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH-GN-NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d-Gt-~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
..|.+||+.+++. ..+..|.......+|+|||+.|+.++.. |. .|.++|+. .+ ...+
T Consensus 270 ~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~-------g~-------------~~~~ 328 (435)
T PRK05137 270 TDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD-------GS-------------NPRR 328 (435)
T ss_pred ceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC-------CC-------------CeEE
Confidence 4577888887754 4566666667778999999999988753 42 25555653 12 1222
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCC-eEEEEEcCCCCC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRG-TCHIFVLTPFGG 483 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dg-TvhIw~i~~~gg 483 (627)
+..+ ...+...+|||||++|+..+.++ ..+||-++..++
T Consensus 329 lt~~--~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 329 ISFG--GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred eecC--CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 2222 12356789999999999887643 344444443343
No 192
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.63 E-value=3.3e-05 Score=83.07 Aligned_cols=82 Identities=17% Similarity=0.372 Sum_probs=59.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee-cCCcCcEEEEEEccCCCEEE
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR-GMTSAVIQDICFSHYSQWIA 465 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r-G~t~a~I~sIaFSpDg~~La 465 (627)
....|+++|||++|..+......|-+|++.+. +|. ...+..... |. .-..++|+|||+||+
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-----~g~----------l~~~~~~~~~G~---~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPA-----TGT----------LTLVQTVPTGGK---FPRHFAFSPDGRYLY 307 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-----TTT----------EEEEEEEEESSS---SEEEEEE-TTSSEEE
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecC-----CCc----------eEEEEEEeCCCC---CccEEEEeCCCCEEE
Confidence 57899999999999998877777999999532 232 112333322 32 268999999999999
Q ss_pred EEe-CCCeEEEEEcCCCCCeee
Q 046828 466 IVS-SRGTCHIFVLTPFGGETV 486 (627)
Q Consensus 466 s~S-~dgTvhIw~i~~~gg~~~ 486 (627)
++. .+++|.+|+++...|.-.
T Consensus 308 Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 308 VANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEETTTTEEEEEEEETTTTEEE
T ss_pred EEecCCCeEEEEEEeCCCCcEE
Confidence 988 567999999987766543
No 193
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.63 E-value=7.8e-08 Score=106.89 Aligned_cols=100 Identities=12% Similarity=0.269 Sum_probs=79.9
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
--.|+||+..+-.++..+..|.-.|+.|+|||||++|+++|.|.+ +.+|..+... ... .-+..
T Consensus 551 hAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt-~sl~~~~~~~----~~e------------~~fa~ 613 (764)
T KOG1063|consen 551 HAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT-VSLYEVQEDI----KDE------------FRFAC 613 (764)
T ss_pred ceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce-EEeeeeeccc----chh------------hhhcc
Confidence 456899999998888899999999999999999999999999987 7999875211 010 11111
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
..-|++ .|++.+|+||++++|++|.|.+|.||.+...
T Consensus 614 ~k~HtR-IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 614 LKAHTR-IIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ccccce-EEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 122322 3999999999999999999999999998754
No 194
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=1.3e-07 Score=100.28 Aligned_cols=141 Identities=18% Similarity=0.233 Sum_probs=93.2
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCC-----------CCc
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSG-----------SAS 428 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g-----------~~~ 428 (627)
.++.||++||||..+...+..+.+|...|.+|.|+|||++||+-+.+ . .+||++.......... .+.
T Consensus 161 tgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~-~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~ 238 (398)
T KOG0771|consen 161 TGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-S-ARVWSVNTGAALARKTPFSKDEMFSSCRFS 238 (398)
T ss_pred eccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-c-eEEEEeccCchhhhcCCcccchhhhhceec
Confidence 56799999999998888888999999999999999999999999999 3 7999986210000000 000
Q ss_pred cccC----------CCCceeEEE--EEeec---------CC-cCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe-e
Q 046828 429 QTYD----------WTSSHVHLY--KLHRG---------MT-SAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE-T 485 (627)
Q Consensus 429 ~~~~----------~~~~~~~l~--~l~rG---------~t-~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~-~ 485 (627)
...+ -+.....++ .+.+| .. .-.|.+++-|+||+++|.++.||.|-|++...-.-. .
T Consensus 239 ~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~ 318 (398)
T KOG0771|consen 239 VDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQY 318 (398)
T ss_pred ccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEe
Confidence 0000 000001111 11111 00 114899999999999999999999999998764322 2
Q ss_pred ecccccccccCCCCCCC
Q 046828 486 VLQIQNSHVDRPTLSPV 502 (627)
Q Consensus 486 ~~~~h~s~v~~~~~~p~ 502 (627)
-.+.|...+.+..+.|.
T Consensus 319 vk~aH~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 319 VKEAHLGFVTGLTFSPD 335 (398)
T ss_pred ehhhheeeeeeEEEcCC
Confidence 34566665665555554
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.62 E-value=1.3e-06 Score=96.67 Aligned_cols=88 Identities=16% Similarity=0.196 Sum_probs=58.9
Q ss_pred EEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee
Q 046828 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI-HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR 445 (627)
Q Consensus 367 V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~-dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r 445 (627)
|.+||+.+++ +..+..|...+...+|+|||+.|+.++. +|. .+||++.... +. ..+ +
T Consensus 274 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~-~~I~~~~~~~-----~~-----------~~~--l-- 331 (429)
T PRK01742 274 IYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGS-PQVYRMSASG-----GG-----------ASL--V-- 331 (429)
T ss_pred EEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCC-ceEEEEECCC-----CC-----------eEE--e--
Confidence 5556776654 4456667777889999999998887664 566 7999875221 10 111 1
Q ss_pred cCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 446 GMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 446 G~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
+.. . ..++|||||++|+..+.++. .+|++..
T Consensus 332 ~~~-~--~~~~~SpDG~~ia~~~~~~i-~~~Dl~~ 362 (429)
T PRK01742 332 GGR-G--YSAQISADGKTLVMINGDNV-VKQDLTS 362 (429)
T ss_pred cCC-C--CCccCCCCCCEEEEEcCCCE-EEEECCC
Confidence 221 1 45789999999999887654 4588754
No 196
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.61 E-value=2.6e-06 Score=86.84 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=80.6
Q ss_pred CCCCeEEEEECCCCeEEEEec-cCCCCeEEEEECCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 362 DIAGMVVVKDIVSRSVISQFR-AHTSPISALCFDRSGT-LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~-aH~~~Is~laFspdG~-lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
..+++++.||+++.++...|. ||...|..|.|+|+-+ +|||+++||. |||||+. .. . ..
T Consensus 190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R-~t-----k------------~p 250 (370)
T KOG1007|consen 190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTR-KT-----K------------FP 250 (370)
T ss_pred eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEecc-CC-----C------------cc
Confidence 468899999999987766665 9999999999999865 6899999998 7999986 21 1 14
Q ss_pred EEEEeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCC
Q 046828 440 LYKLHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~g 482 (627)
+.++ .+|+ ..|+++.|.| -.+.|.+++.|..|-+|....-.
T Consensus 251 v~el-~~Hs-HWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 251 VQEL-PGHS-HWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred cccc-CCCc-eEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence 5555 5665 4699999999 45788899999999999876554
No 197
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.57 E-value=7.2e-05 Score=82.51 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=37.0
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe--CC--eEEEEeCCCCce
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL--AA--QIYCFDALTLES 230 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~--~~--~I~i~D~~t~e~ 230 (627)
..|.+||+.+++......++..+...++++ +.|+... ++ .|++||+.+++.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~ 279 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL 279 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 359999999998755445666666788887 6676543 22 699999998764
No 198
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.56 E-value=3.2e-06 Score=83.62 Aligned_cols=52 Identities=21% Similarity=0.348 Sum_probs=41.5
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC-----CCEEEEEeCC
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH-----GNNINIFRIM 416 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d-----Gt~I~Vwdi~ 416 (627)
..|.|.+||..+.+.+..+... .++.++|||||++|+|+... ..-++||+..
T Consensus 123 ~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 123 LNGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CCcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 4588999999999888877633 47899999999999999863 1237899873
No 199
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.56 E-value=8.3e-06 Score=90.32 Aligned_cols=93 Identities=17% Similarity=0.150 Sum_probs=59.6
Q ss_pred eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee
Q 046828 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR 445 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r 445 (627)
.|.+||+.+++.. .+..+...+...+|+|||+.|+..+.++...+||.+... .+ ...++..
T Consensus 268 ~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-----~g-------------~~~~lt~ 328 (429)
T PRK03629 268 NLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-----GG-------------APQRITW 328 (429)
T ss_pred EEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC-----CC-------------CeEEeec
Confidence 4888999887643 444455567889999999999888876433577755322 12 1122211
Q ss_pred cCCcCcEEEEEEccCCCEEEEEeCC-Ce--EEEEEcC
Q 046828 446 GMTSAVIQDICFSHYSQWIAIVSSR-GT--CHIFVLT 479 (627)
Q Consensus 446 G~t~a~I~sIaFSpDg~~Las~S~d-gT--vhIw~i~ 479 (627)
. ...+...+|||||++|+..+.+ +. +.+|++.
T Consensus 329 ~--~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~ 363 (429)
T PRK03629 329 E--GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 363 (429)
T ss_pred C--CCCccCEEECCCCCEEEEEEccCCCceEEEEECC
Confidence 1 1225678999999999987654 33 4555554
No 200
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.54 E-value=3.2e-06 Score=86.33 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=78.1
Q ss_pred CCCCCCeEEEEECCCCeEEEEec---cCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFR---AHTSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~---aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
+.+.||.||++|++..+--..+. ....|+..|+++++ -.++||--.|...|.|-|+. .+.
T Consensus 214 SvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR-~P~--------------- 277 (364)
T KOG0290|consen 214 SVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR-VPC--------------- 277 (364)
T ss_pred EecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec-CCC---------------
Confidence 45689999999999876433333 22467889999984 57889988887778999996 321
Q ss_pred ceeEEEEEeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCC
Q 046828 436 SHVHLYKLHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 436 ~~~~l~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~g 482 (627)
..+.+| |||. +.|..|+|.| .+..|+++++|.-+-||++..-.
T Consensus 278 --tpva~L-~~H~-a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 278 --TPVARL-RNHQ-ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred --cceehh-hcCc-ccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 145556 5664 6799999999 55689999999999999998643
No 201
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=0.0002 Score=75.49 Aligned_cols=107 Identities=14% Similarity=0.214 Sum_probs=71.7
Q ss_pred CCCCeEEEEECCCC-eEEEEeccC---------CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcccc
Q 046828 362 DIAGMVVVKDIVSR-SVISQFRAH---------TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTY 431 (627)
Q Consensus 362 ~~dG~V~IwD~~s~-~~l~~~~aH---------~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~ 431 (627)
+-+++|.+|+.... ..+..++.+ .....+|..+|||++|..+..--..|-+|.+.+.. |
T Consensus 210 EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~-----g------ 278 (346)
T COG2706 210 ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG-----G------ 278 (346)
T ss_pred ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC-----C------
Confidence 34567777776653 222222222 34588999999999998766555568899987542 2
Q ss_pred CCCCceeEEEEEeecCCcCc-EEEEEEccCCCEEEEEeCCC-eEEEEEcCCCCCeee
Q 046828 432 DWTSSHVHLYKLHRGMTSAV-IQDICFSHYSQWIAIVSSRG-TCHIFVLTPFGGETV 486 (627)
Q Consensus 432 ~~~~~~~~l~~l~rG~t~a~-I~sIaFSpDg~~Las~S~dg-TvhIw~i~~~gg~~~ 486 (627)
+|.-+.+-.+.+. -.+..|++++++|+++..++ +++||.+++..|.-.
T Consensus 279 -------~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 279 -------KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred -------EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 2222222222232 57899999999999988765 799999998877643
No 202
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.53 E-value=1.1e-05 Score=89.51 Aligned_cols=93 Identities=22% Similarity=0.274 Sum_probs=60.1
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC-CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH-GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d-Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
..|.+||+.+++. ..+..|.......+|+|||+.|+..+.. |. ..||.+... .+. .....+
T Consensus 272 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~-~~iy~~dl~-----~g~-----------~~~lt~ 333 (433)
T PRK04922 272 PEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGR-PQIYRVAAS-----GGS-----------AERLTF 333 (433)
T ss_pred ceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCC-ceEEEEECC-----CCC-----------eEEeec
Confidence 4688999988764 4566666556778999999999888754 44 455544211 121 111222
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCC---eEEEEEcC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRG---TCHIFVLT 479 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dg---TvhIw~i~ 479 (627)
.|. ....++|||||++|+..+.++ .|.+|++.
T Consensus 334 -~g~---~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~ 368 (433)
T PRK04922 334 -QGN---YNARASVSPDGKKIAMVHGSGGQYRIAVMDLS 368 (433)
T ss_pred -CCC---CccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence 221 245689999999999876543 47777764
No 203
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=3.7e-06 Score=88.74 Aligned_cols=101 Identities=20% Similarity=0.183 Sum_probs=85.1
Q ss_pred CCCCeEEEEECCCC-eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 362 DIAGMVVVKDIVSR-SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 362 ~~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
..-+.|++||+..+ +++..|.--..+|+++...|+|.++.+|...|. +-.||+. .+ .++
T Consensus 223 T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r-------~~------------kl~ 282 (412)
T KOG3881|consen 223 TRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLR-------GG------------KLL 282 (412)
T ss_pred ecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheeccc-------Cc------------eee
Confidence 34578999999876 589999988999999999999999999999998 7999986 22 244
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
-..+.|.+. .|.+|.-.|..++||+++.|.-++|||+....-
T Consensus 283 g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 283 GCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred ccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 443567664 499999999999999999999999999987543
No 204
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.50 E-value=4.2e-06 Score=83.66 Aligned_cols=106 Identities=10% Similarity=0.180 Sum_probs=70.5
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
+.|+.+.-||+++++....+++|+.-|-++.--...-.+.|+++||+ +||||++. +...+-.. .+.+--
T Consensus 133 gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGt-vRvWd~kt-------~k~v~~ie---~yk~~~ 201 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGT-VRVWDTKT-------QKHVSMIE---PYKNPN 201 (325)
T ss_pred cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCcc-EEEEeccc-------cceeEEec---cccChh
Confidence 47999999999999999999999999999999444445679999999 79999972 21100000 000111
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
+.|-+-...|-+++- |..||+++... ..-||.+....
T Consensus 202 -~lRp~~g~wigala~--~edWlvCGgGp-~lslwhLrsse 238 (325)
T KOG0649|consen 202 -LLRPDWGKWIGALAV--NEDWLVCGGGP-KLSLWHLRSSE 238 (325)
T ss_pred -hcCcccCceeEEEec--cCceEEecCCC-ceeEEeccCCC
Confidence 112222223665554 55599887544 57889987654
No 205
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.49 E-value=5.3e-05 Score=82.73 Aligned_cols=89 Identities=16% Similarity=0.210 Sum_probs=56.2
Q ss_pred eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCC--EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGN--NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt--~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
.|.++|+.+++. ..+..+...+..++|+|+|++|+.++.++. .|.+||+. ++ ....+
T Consensus 303 ~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~-------~~-------------~~~~l 361 (417)
T TIGR02800 303 QIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD-------GG-------------GERVL 361 (417)
T ss_pred eEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC-------CC-------------CeEEc
Confidence 566777776653 234444556778899999999999887752 25666764 12 11222
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
..+ ......+|+||+++|+..+.++....+.+
T Consensus 362 ~~~---~~~~~p~~spdg~~l~~~~~~~~~~~l~~ 393 (417)
T TIGR02800 362 TDT---GLDESPSFAPNGRMILYATTRGGRGVLGL 393 (417)
T ss_pred cCC---CCCCCceECCCCCEEEEEEeCCCcEEEEE
Confidence 111 12356789999999999888765443333
No 206
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.49 E-value=1.3e-06 Score=90.84 Aligned_cols=103 Identities=13% Similarity=0.183 Sum_probs=77.3
Q ss_pred CCCCCeEEEEECCCCeEEEEec--cCC-CCeEEEEECCCCCEEEEEeCCCC---EEEEEeCCCCCCCCCCCCCccccCCC
Q 046828 361 TDIAGMVVVKDIVSRSVISQFR--AHT-SPISALCFDRSGTLLVTASIHGN---NINIFRIMPSSSKGRSGSASQTYDWT 434 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~--aH~-~~Is~laFspdG~lLaTaS~dGt---~I~Vwdi~p~~~~~~~g~~~~~~~~~ 434 (627)
+..||+|++||+++....+++. +|. .|..+++.+..+.+++++.+.-. .+.+||+....
T Consensus 90 ~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q--------------- 154 (376)
T KOG1188|consen 90 CSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ--------------- 154 (376)
T ss_pred eccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc---------------
Confidence 4679999999999887666554 555 57788888889999999976432 36899996211
Q ss_pred CceeEEEEEeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCC
Q 046828 435 SSHVHLYKLHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 435 ~~~~~l~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~g 482 (627)
+.+..+..-| ...|++|.|.| |-..|++||-||-|-||+++...
T Consensus 155 ---q~l~~~~eSH-~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 155 ---QLLRQLNESH-NDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred ---chhhhhhhhc-cCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 1233333333 34699999999 77899999999999999998653
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.48 E-value=1.5e-07 Score=102.14 Aligned_cols=103 Identities=17% Similarity=0.246 Sum_probs=74.1
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEE
Q 046828 377 VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDIC 456 (627)
Q Consensus 377 ~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIa 456 (627)
++....--...|...+|+|||++||+.|.||. +||||.. . ++|.-+.+-. -+-..|++
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fd-t-------------------~eLlg~mkSY-FGGLLCvc 339 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFD-T-------------------QELLGVMKSY-FGGLLCVC 339 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCce-EEEeecc-H-------------------HHHHHHHHhh-ccceEEEE
Confidence 34444434568999999999999999999998 7999985 1 1222221111 12479999
Q ss_pred EccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCC
Q 046828 457 FSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSP 501 (627)
Q Consensus 457 FSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p 501 (627)
||||||||++|+.|.-|.||.+....-...-++|++=|....++|
T Consensus 340 WSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 340 WSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999987655445567776554444443
No 208
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.47 E-value=1.1e-05 Score=85.29 Aligned_cols=127 Identities=13% Similarity=0.123 Sum_probs=85.9
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEE-EeccCcEEEEecCCCCCceEEe------eecCCceEEEEEeeCCCCCCCCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLL-LGYSNGFQVLDVEDATNVSELV------SRRDDPVTFLQMQPLPAKSDGQEG 131 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~-~Gy~~G~qVWdv~~~~~~~ell------s~~dG~V~~v~~lp~p~~~~~~D~ 131 (627)
..|+.+|+.+.|+-. + ..++. ++.|..+.||++...+-.+++. -.|.-.|..|++-|.-.
T Consensus 78 ~GHt~~vLDi~w~Pf--n----D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~------- 144 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPF--N----DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP------- 144 (472)
T ss_pred cCccccccccccCcc--C----CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-------
Confidence 347788886555422 2 23444 4556689999998766433222 23444555566555421
Q ss_pred cCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--
Q 046828 132 FRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP-- 209 (627)
Q Consensus 132 f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~-- 209 (627)
+.|+. +..+++|.+|+..||+.+-+|+++.-|++|.||.
T Consensus 145 -----NVLls----------------------------------ag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 145 -----NVLLS----------------------------------AGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDG 185 (472)
T ss_pred -----hhHhh----------------------------------ccCCceEEEEeccCCceeeecCCCCeEEEEEeccCC
Confidence 22221 1235889999999999999999999999999997
Q ss_pred cEEEEEe-CCeEEEEeCCCCceeEEEEcC
Q 046828 210 RIVAVGL-AAQIYCFDALTLESKFSVLTY 237 (627)
Q Consensus 210 ~~LaV~~-~~~I~i~D~~t~e~~~tl~~~ 237 (627)
..|+.+. +.+|+|||.++++.+..-..|
T Consensus 186 s~l~TtckDKkvRv~dpr~~~~v~e~~~h 214 (472)
T KOG0303|consen 186 SLLCTTCKDKKVRVIDPRRGTVVSEGVAH 214 (472)
T ss_pred ceeeeecccceeEEEcCCCCcEeeecccc
Confidence 5666554 568999999999987665444
No 209
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.43 E-value=0.0008 Score=72.54 Aligned_cols=98 Identities=17% Similarity=0.191 Sum_probs=66.3
Q ss_pred CCCeEEEEECCC-----CeEEEEecc-------CCCCeEEEEECCCCCEEEEEeCC---------CCEEEEEeCCCCCCC
Q 046828 363 IAGMVVVKDIVS-----RSVISQFRA-------HTSPISALCFDRSGTLLVTASIH---------GNNINIFRIMPSSSK 421 (627)
Q Consensus 363 ~dG~V~IwD~~s-----~~~l~~~~a-------H~~~Is~laFspdG~lLaTaS~d---------Gt~I~Vwdi~p~~~~ 421 (627)
..|.|.+.|+.. .+.+..+.. ....+.-++|+|+|+.|..+... |+.|-|+|..
T Consensus 213 ~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~----- 287 (352)
T TIGR02658 213 YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK----- 287 (352)
T ss_pred cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC-----
Confidence 349999999543 333433322 12334459999999999885422 2347888875
Q ss_pred CCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCC-EEEEEe-CCCeEEEEEcCCCC
Q 046828 422 GRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQ-WIAIVS-SRGTCHIFVLTPFG 482 (627)
Q Consensus 422 ~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~-~Las~S-~dgTvhIw~i~~~g 482 (627)
++ ..+.++.-|. .+..|+||||++ +|.+.+ .+++|+|+|+....
T Consensus 288 --t~------------kvi~~i~vG~---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 288 --TG------------KRLRKIELGH---EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred --CC------------eEEEEEeCCC---ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 23 2555555453 589999999999 887777 58899999987643
No 210
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.43 E-value=0.00011 Score=82.00 Aligned_cols=51 Identities=22% Similarity=0.215 Sum_probs=35.2
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe--CC--eEEEEeCCCCce
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL--AA--QIYCFDALTLES 230 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~--~~--~I~i~D~~t~e~ 230 (627)
..|.+||+.+++....-.++.......+++ +.|+... ++ +|+++|+.+++.
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL 298 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence 459999999987644334555556788887 5665543 23 499999988764
No 211
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.39 E-value=7.2e-07 Score=64.15 Aligned_cols=38 Identities=26% Similarity=0.633 Sum_probs=36.1
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEe
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFR 414 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwd 414 (627)
+++..|++|.++|.+|+|+|++.+|+|++.||+ |+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence 578899999999999999999999999999997 89997
No 212
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.38 E-value=3.2e-05 Score=85.58 Aligned_cols=92 Identities=15% Similarity=0.178 Sum_probs=58.3
Q ss_pred EEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC-CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee
Q 046828 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH-GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR 445 (627)
Q Consensus 367 V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d-Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r 445 (627)
|.++|+.++. +..+..|...+...+|+|||+.|+..+.. |. ..||.+... .+. .....+ .
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~-~~Iy~~~~~-----~g~-----------~~~lt~-~ 326 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA-PQIYRMPAS-----GGA-----------AQRVTF-T 326 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCC-cEEEEEECC-----CCc-----------eEEEec-C
Confidence 4455555443 44555565556678899999999887765 44 678876311 111 112222 2
Q ss_pred cCCcCcEEEEEEccCCCEEEEEeCCC---eEEEEEcCC
Q 046828 446 GMTSAVIQDICFSHYSQWIAIVSSRG---TCHIFVLTP 480 (627)
Q Consensus 446 G~t~a~I~sIaFSpDg~~Las~S~dg---TvhIw~i~~ 480 (627)
|. .....+|||||++|+..+.++ .|.+|++..
T Consensus 327 g~---~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~ 361 (427)
T PRK02889 327 GS---YNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT 361 (427)
T ss_pred CC---CcCceEECCCCCEEEEEEccCCcEEEEEEECCC
Confidence 21 234678999999999888765 588888764
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.38 E-value=4.6e-06 Score=92.55 Aligned_cols=144 Identities=14% Similarity=0.176 Sum_probs=109.3
Q ss_pred eEEEEEecC--cEEEEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCc
Q 046828 201 TVYMVRCSP--RIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGR 278 (627)
Q Consensus 201 ~V~sV~~s~--~~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr 278 (627)
.|++|+|-| .-|+++.++++++||..+|..++++.+|... + ..+||+-+..
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDt-------------V-------ycVAys~dGk------- 66 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDT-------------V-------YCVAYAKDGK------- 66 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccce-------------E-------EEEEEccCCc-------
Confidence 788999987 5788888899999999999999999998653 2 2356765321
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccc
Q 046828 279 LSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHS 358 (627)
Q Consensus 279 ~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~ 358 (627)
+|
T Consensus 67 --------------------------------------------------------------------------rF---- 68 (1081)
T KOG1538|consen 67 --------------------------------------------------------------------------RF---- 68 (1081)
T ss_pred --------------------------------------------------------------------------ee----
Confidence 01
Q ss_pred cCCCCCCeEEEEECCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 359 SDTDIAGMVVVKDIVSRSVISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 359 ~~~~~dG~V~IwD~~s~~~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
++++.|..|.||.-+-. ..++ .|...|.|+.|+|=...|||+|-.- +-+|.....
T Consensus 69 ASG~aDK~VI~W~~klE---G~LkYSH~D~IQCMsFNP~~h~LasCsLsd--FglWS~~qK------------------- 124 (1081)
T KOG1538|consen 69 ASGSADKSVIIWTSKLE---GILKYSHNDAIQCMSFNPITHQLASCSLSD--FGLWSPEQK------------------- 124 (1081)
T ss_pred ccCCCceeEEEeccccc---ceeeeccCCeeeEeecCchHHHhhhcchhh--ccccChhhh-------------------
Confidence 14567899999976533 2333 7999999999999999999999863 678975410
Q ss_pred eEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 438 VHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
.+.+. + ..++|.+++|..||++||.|=.+|||-|-+
T Consensus 125 -~V~K~-k--ss~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 125 -SVSKH-K--SSSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred -hHHhh-h--hheeEEEeeecCCCcEEEEeccCceEEeec
Confidence 11111 1 245799999999999999999999999874
No 214
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.37 E-value=1.2e-05 Score=87.77 Aligned_cols=84 Identities=12% Similarity=0.049 Sum_probs=64.0
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
++++|-..+|||-. ++.+..-.+|..||++++|+|+ ++++.+|-+ + .| +. .
T Consensus 203 sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t-~R---~~-~--------------------- 253 (737)
T KOG1524|consen 203 SGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-T-AR---FS-S--------------------- 253 (737)
T ss_pred ecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee-e-ee---ec-C---------------------
Confidence 46789999999976 5667777899999999999999 888888754 2 34 21 1
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEE-EEEcC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCH-IFVLT 479 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvh-Iw~i~ 479 (627)
. ....|..|+||+||..+++++..|-+. -+.++
T Consensus 254 ---p----~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ie 287 (737)
T KOG1524|consen 254 ---P----RVGSIFNLSWSADGTQATCGTSTGQLIVAYAIE 287 (737)
T ss_pred ---C----CccceEEEEEcCCCceeeccccCceEEEeeeeh
Confidence 0 112489999999999999999999753 34444
No 215
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.37 E-value=1.8e-05 Score=82.91 Aligned_cols=97 Identities=20% Similarity=0.311 Sum_probs=71.0
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.+..|+|||..++..+-...--...++-|.|||||..|..|.-|+. ++||+.... |.. ..+.
T Consensus 216 gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~dav-frlw~e~q~--------------wt~---erw~ 277 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAV-FRLWQENQS--------------WTK---ERWI 277 (445)
T ss_pred CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccce-eeeehhccc--------------cee---ccee
Confidence 4678999999998766555444567999999999999999999986 899975311 111 1222
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
+-.| .|+.-+|+|+|++|..+....+ .||.+.-.+
T Consensus 278 lgsg----rvqtacWspcGsfLLf~~sgsp-~lysl~f~~ 312 (445)
T KOG2139|consen 278 LGSG----RVQTACWSPCGSFLLFACSGSP-RLYSLTFDG 312 (445)
T ss_pred ccCC----ceeeeeecCCCCEEEEEEcCCc-eEEEEeecC
Confidence 2223 6999999999999998876554 577776443
No 216
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.35 E-value=4.1e-05 Score=87.73 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=72.2
Q ss_pred CCeEEEEECCCCeE-EEEe---ccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 364 AGMVVVKDIVSRSV-ISQF---RAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 364 dG~V~IwD~~s~~~-l~~~---~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
+..+.+|+..++.. .... .-|+-++.+.+|+|.++++|+|..||+ |.||.-.-. .+ ... .
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGr-I~vw~d~~~-----~~--------~~~--t 243 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGR-ILVWRDFGS-----SD--------DSE--T 243 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCc-EEEEecccc-----cc--------ccc--c
Confidence 44577788776541 1111 246777999999999999999999999 899974310 00 000 1
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
...++. +.+.|.+++||+||.+|.+|+..|-.-+|.+...+
T Consensus 244 ~t~lHW--H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 244 CTLLHW--HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred ceEEEe--cccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 122223 23469999999999999999999999999998765
No 217
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.30 E-value=7e-05 Score=83.49 Aligned_cols=97 Identities=19% Similarity=0.262 Sum_probs=61.2
Q ss_pred eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE-e
Q 046828 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL-H 444 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l-~ 444 (627)
.|.++|+.+++. ..+..|.......+|+|||+.|+..+..+....||.+... +|. ..++ .
T Consensus 287 ~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-----~g~-------------~~~Lt~ 347 (448)
T PRK04792 287 EIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-----SGK-------------VSRLTF 347 (448)
T ss_pred EEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-----CCC-------------EEEEec
Confidence 577788887653 4555565566778999999998877764322456644311 221 1222 1
Q ss_pred ecCCcCcEEEEEEccCCCEEEEEeC-CCeEEEEEcCCCCCe
Q 046828 445 RGMTSAVIQDICFSHYSQWIAIVSS-RGTCHIFVLTPFGGE 484 (627)
Q Consensus 445 rG~t~a~I~sIaFSpDg~~Las~S~-dgTvhIw~i~~~gg~ 484 (627)
.+.. ....+|||||++|+..+. ++..+||.++..++.
T Consensus 348 ~g~~---~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 348 EGEQ---NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA 385 (448)
T ss_pred CCCC---CcCeeECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence 2222 345799999999988766 456788777655544
No 218
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.29 E-value=0.00011 Score=80.28 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=59.7
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC-C-EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG-N-NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG-t-~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
..|.+||+.+++. ..+..|.......+|+|||+.|+..+.++ . .|.++|+. .+ ...+
T Consensus 258 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~-------~~-------------~~~~ 316 (417)
T TIGR02800 258 PDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD-------GG-------------EVRR 316 (417)
T ss_pred ccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC-------CC-------------CEEE
Confidence 4578888887653 44555555556779999999988777654 3 24444543 12 1222
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCC---eEEEEEcCC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRG---TCHIFVLTP 480 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dg---TvhIw~i~~ 480 (627)
+..+ ...+..++|||||++|+.++.++ .|.+|++..
T Consensus 317 l~~~--~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 317 LTFR--GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred eecC--CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 2211 12367889999999999998876 566666654
No 219
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.27 E-value=0.00016 Score=79.83 Aligned_cols=92 Identities=18% Similarity=0.197 Sum_probs=55.8
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC-CC-EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH-GN-NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d-Gt-~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
..|.+||+.+++. ..+..+........|+|||+.|+..+.. |. .|.++++. .|. .....
T Consensus 267 ~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~-------~g~-----------~~~lt 327 (430)
T PRK00178 267 PEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN-------GGR-----------AERVT 327 (430)
T ss_pred ceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC-------CCC-----------EEEee
Confidence 3578888887754 3455555556678999999988877754 33 24444543 221 11111
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCC-Ce--EEEEEcC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSR-GT--CHIFVLT 479 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~d-gT--vhIw~i~ 479 (627)
. .+. .....+|||||++|+..+.+ +. +.+|++.
T Consensus 328 ~-~~~---~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~ 363 (430)
T PRK00178 328 F-VGN---YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQ 363 (430)
T ss_pred c-CCC---CccceEECCCCCEEEEEEccCCceEEEEEECC
Confidence 1 221 13457899999999988764 43 4455554
No 220
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=5.7e-05 Score=87.99 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=74.8
Q ss_pred CCCCCCeEEEEECCCC--eEEEEeccCC---CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCC
Q 046828 360 DTDIAGMVVVKDIVSR--SVISQFRAHT---SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWT 434 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~--~~l~~~~aH~---~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~ 434 (627)
+++.+|.|++||+... +...++..|- +.+++|..++...++|+|+. + .|+||++. |.-.
T Consensus 1274 Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q-~ikIy~~~--------G~~l------ 1337 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q-LIKIYSLS--------GEQL------ 1337 (1387)
T ss_pred eeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c-eEEEEecC--------hhhh------
Confidence 4678999999999873 2233444553 35999999999999999998 4 48999985 2100
Q ss_pred CceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 435 SSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 435 ~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.. .+-+..+-|.....+.+++|.|---.||+|+.|.+|-||.-+..
T Consensus 1338 ~~-~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1338 NI-IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cc-cccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 00 01112222333344899999999999999999999999987653
No 221
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=8.1e-05 Score=86.78 Aligned_cols=101 Identities=24% Similarity=0.269 Sum_probs=75.5
Q ss_pred CCCCCeEEEEECCCC---eEEEEeccCCCC--eEEEEECCCCCE-EEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCC
Q 046828 361 TDIAGMVVVKDIVSR---SVISQFRAHTSP--ISALCFDRSGTL-LVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWT 434 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~---~~l~~~~aH~~~--Is~laFspdG~l-LaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~ 434 (627)
|-.||.|++||.... ..+...+.|... |..+.|.+.|-- |++||.+|. |++||+.-... -.
T Consensus 1227 GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~----e~-------- 1293 (1387)
T KOG1517|consen 1227 GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSK----ET-------- 1293 (1387)
T ss_pred eecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcc----cc--------
Confidence 346999999998764 358888999887 999999998876 999999998 89999962110 00
Q ss_pred CceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 435 SSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 435 ~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
...-.+.-..|- ..+++...++...+|+|+. +.|.||++.
T Consensus 1294 -~~~iv~~~~yGs---~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1294 -FLTIVAHWEYGS---ALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred -cceeeeccccCc---cceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 000111111132 3688889999999999999 999999985
No 222
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.17 E-value=9.6e-06 Score=81.96 Aligned_cols=55 Identities=15% Similarity=0.284 Sum_probs=51.9
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
+++-||.||||.-+++++++.++-|...|.+|+|+||-.++|.||.|++ |-+|++
T Consensus 268 TAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r-ISLWkL 322 (323)
T KOG0322|consen 268 TAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR-ISLWKL 322 (323)
T ss_pred ecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce-EEeeec
Confidence 4678999999999999999999999999999999999999999999998 899985
No 223
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.17 E-value=0.001 Score=73.79 Aligned_cols=83 Identities=11% Similarity=0.225 Sum_probs=51.7
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEeCC-C-CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEE
Q 046828 379 SQFRAHTSPISALCFDRSGTLLVTASIH-G-NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDIC 456 (627)
Q Consensus 379 ~~~~aH~~~Is~laFspdG~lLaTaS~d-G-t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIa 456 (627)
..+..+...+...+|+|||+.|+..+.+ | ..|.+||+. +| ...++..+ ...+.+..
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~-------~g-------------~~~~Lt~~--~~~~~~p~ 377 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLA-------TG-------------RDYQLTTS--PENKESPS 377 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECC-------CC-------------CeEEccCC--CCCccceE
Confidence 3344444567788999999999877654 2 347888875 23 12233222 12367899
Q ss_pred EccCCCEEEEEeC-CCeEEEEEcCCCCC
Q 046828 457 FSHYSQWIAIVSS-RGTCHIFVLTPFGG 483 (627)
Q Consensus 457 FSpDg~~Las~S~-dgTvhIw~i~~~gg 483 (627)
|+|||++|+..+. ++.-.||.++..++
T Consensus 378 wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 378 WAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 9999999986544 44445555544444
No 224
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.17 E-value=4.6e-05 Score=86.29 Aligned_cols=56 Identities=14% Similarity=0.324 Sum_probs=47.2
Q ss_pred CCCCCCeEEEEECCCC--eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 360 DTDIAGMVVVKDIVSR--SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~--~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
.++.+|.+.|||+... +++...+.+......+.|+++|++|+.|+..|+ +++|++.
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~-~~~~~l~ 516 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGT-THILKLS 516 (555)
T ss_pred EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCc-EEEEEcC
Confidence 3467999999999654 567777767777888999999999999999999 7999985
No 225
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.14 E-value=1.7e-06 Score=98.09 Aligned_cols=52 Identities=19% Similarity=0.313 Sum_probs=47.0
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
+++.|..|++|-+..+.++..+++|++.|++|+|+|-- +.+.||+ +++||..
T Consensus 249 aaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt-~~~wd~r 300 (1113)
T KOG0644|consen 249 AASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGT-CRIWDAR 300 (1113)
T ss_pred hcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCc-eEecccc
Confidence 45689999999999999999999999999999999965 7788998 7999975
No 226
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.13 E-value=0.0043 Score=66.71 Aligned_cols=104 Identities=21% Similarity=0.351 Sum_probs=64.9
Q ss_pred CeEEEEECCCCe--E--EEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 365 GMVVVKDIVSRS--V--ISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 365 G~V~IwD~~s~~--~--l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
..|.+|++.... . ...+. .....-..|+|+|||+++....+....|.+|++.+. .|. ...
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~-----~g~----------~~~ 230 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS-----DGS----------LTE 230 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT-----TTE----------EEE
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc-----CCc----------eeE
Confidence 357777775543 1 23333 223456889999999999999888777999998522 221 011
Q ss_pred EEEEe---ecCCcC-cEEEEEEccCCCEEEEEeC-CCeEEEEEcCCCCC
Q 046828 440 LYKLH---RGMTSA-VIQDICFSHYSQWIAIVSS-RGTCHIFVLTPFGG 483 (627)
Q Consensus 440 l~~l~---rG~t~a-~I~sIaFSpDg~~Las~S~-dgTvhIw~i~~~gg 483 (627)
+.... .+.+.. .-..|++||||++|.++.. .++|.+|++++..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g 279 (345)
T PF10282_consen 231 IQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG 279 (345)
T ss_dssp EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT
T ss_pred EEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC
Confidence 22111 122221 3789999999999988774 66899999976544
No 227
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.12 E-value=5.8e-06 Score=90.28 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=71.9
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEE
Q 046828 377 VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDIC 456 (627)
Q Consensus 377 ~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIa 456 (627)
+-+.+.+|++=|+||.|+.+|.+||+||+|-+ +.|||.. + +..++....||+ +.|.++.
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r-~ivWd~~-~------------------~KllhsI~TgHt-aNIFsvK 100 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTR-LIVWDPF-E------------------YKLLHSISTGHT-ANIFSVK 100 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcce-EEeecch-h------------------cceeeeeecccc-cceeEEe
Confidence 34678999999999999999999999999976 7999964 1 136777788987 5799999
Q ss_pred Ecc--CCCEEEEEeCCCeEEEEEcCCC
Q 046828 457 FSH--YSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 457 FSp--Dg~~Las~S~dgTvhIw~i~~~ 481 (627)
|-| ..+.|+++..|..||||+++..
T Consensus 101 FvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 101 FVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred eeccCCCeEEEeccCcceEEEEecccc
Confidence 999 6689999999999999999863
No 228
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.11 E-value=0.00031 Score=77.61 Aligned_cols=107 Identities=16% Similarity=0.204 Sum_probs=72.2
Q ss_pred CCCCCeEEEEECCCCeEEEEecc------CCC-----CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcc
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRA------HTS-----PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQ 429 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~a------H~~-----~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~ 429 (627)
+..+|.|..||......+..+.+ |.. .|++|+|+.||-.++.|...|. +.|||+.. ..
T Consensus 193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-v~iyDLRa-------~~--- 261 (703)
T KOG2321|consen 193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-VLIYDLRA-------SK--- 261 (703)
T ss_pred cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-EEEEEccc-------CC---
Confidence 34688899999887765555543 322 3999999999999999999998 69999962 11
Q ss_pred ccCCCCceeEEEEEeecCCcCcEEEEEEccC-CCEEEEEeCCCeEEEEEcCCCCCeeecc
Q 046828 430 TYDWTSSHVHLYKLHRGMTSAVIQDICFSHY-SQWIAIVSSRGTCHIFVLTPFGGETVLQ 488 (627)
Q Consensus 430 ~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpD-g~~Las~S~dgTvhIw~i~~~gg~~~~~ 488 (627)
.+..-..+. .-.|..|.|-+. .+--+++.+...++||+-........++
T Consensus 262 ---------pl~~kdh~~-e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 262 ---------PLLVKDHGY-ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE 311 (703)
T ss_pred ---------ceeecccCC-ccceeeecccccCCCceEEecchHHhhhcccccCCceeecc
Confidence 122111121 235999999664 4444555677789999976544444333
No 229
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.11 E-value=5.4e-05 Score=78.48 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=45.0
Q ss_pred CCCCCCeEEEEECCC-CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 360 DTDIAGMVVVKDIVS-RSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s-~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
+++.+|.|++||++. +..+..+..|...++.++|+|-=.+|||+| |+ |+|..
T Consensus 314 sG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss--Gq--r~f~~ 366 (406)
T KOG2919|consen 314 SGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS--GQ--RIFKY 366 (406)
T ss_pred ccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc--Cc--eeecC
Confidence 356789999999998 677899999999999999999999999998 54 67765
No 230
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.09 E-value=0.00099 Score=72.55 Aligned_cols=178 Identities=12% Similarity=0.091 Sum_probs=108.6
Q ss_pred cEEEEEECCCCceEEEEecCCeE-EEEEecC--cEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTV-YMVRCSP--RIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYG 255 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V-~sV~~s~--~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~ 255 (627)
+.|.|.|..+.+.++++.....+ ..+.+++ +++.|+ .++.|.++|+.+++.+.++..-..|
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~--------------- 80 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP--------------- 80 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE---------------
T ss_pred CEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc---------------
Confidence 67999999999999999865544 4466776 666555 4679999999999988888642221
Q ss_pred eeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecccc
Q 046828 256 PMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFI 335 (627)
Q Consensus 256 ~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~ 335 (627)
+-+|++.+... -.+..
T Consensus 81 ------~~i~~s~DG~~----------------------------------------------------~~v~n------ 96 (369)
T PF02239_consen 81 ------RGIAVSPDGKY----------------------------------------------------VYVAN------ 96 (369)
T ss_dssp ------EEEEE--TTTE----------------------------------------------------EEEEE------
T ss_pred ------ceEEEcCCCCE----------------------------------------------------EEEEe------
Confidence 23343332110 00111
Q ss_pred CCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccC-------CCCeEEEEECCCCCEEEEEeCCCC
Q 046828 336 PDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAH-------TSPISALCFDRSGTLLVTASIHGN 408 (627)
Q Consensus 336 p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH-------~~~Is~laFspdG~lLaTaS~dGt 408 (627)
..++.|.|+|.++.+++.++... .+.+.+|-.+|....++.+-.+.-
T Consensus 97 --------------------------~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~ 150 (369)
T PF02239_consen 97 --------------------------YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTG 150 (369)
T ss_dssp --------------------------EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTT
T ss_pred --------------------------cCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCC
Confidence 14678999999999999988754 346889999999997777766643
Q ss_pred EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEE-eCCCeEEEEEcCCCC
Q 046828 409 NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIV-SSRGTCHIFVLTPFG 482 (627)
Q Consensus 409 ~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~-S~dgTvhIw~i~~~g 482 (627)
.|-+-|.... . ......+..|. ...+..|+||+++++++ ..+..+-+++.....
T Consensus 151 ~I~vVdy~d~-------~----------~~~~~~i~~g~---~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 151 EIWVVDYSDP-------K----------NLKVTTIKVGR---FPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp EEEEEETTTS-------S----------CEEEEEEE--T---TEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred eEEEEEeccc-------c----------ccceeeecccc---cccccccCcccceeeecccccceeEEEeeccce
Confidence 3444454311 0 01223333332 26899999999987664 557788888877643
No 231
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.07 E-value=4.1e-05 Score=83.30 Aligned_cols=105 Identities=17% Similarity=0.287 Sum_probs=76.7
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
..+|.|.|.|..+.+.+..|.....+-..++|+|||++|..++.||. |.++|+. ++ ..+.
T Consensus 13 ~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~-vsviD~~-------~~------------~~v~ 72 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGT-VSVIDLA-------TG------------KVVA 72 (369)
T ss_dssp GGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSE-EEEEETT-------SS------------SEEE
T ss_pred cCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCe-EEEEECC-------cc------------cEEE
Confidence 36789999999999999999976555556889999999999999997 7999986 23 2566
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCCCCeeeccc
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPFGGETVLQI 489 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~gg~~~~~~ 489 (627)
+++-|.. -.++++|+||++|+++. ..+++.|+|.........+..
T Consensus 73 ~i~~G~~---~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 73 TIKVGGN---PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp EEE-SSE---EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred EEecCCC---cceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence 6766653 58899999999999876 689999999887655544433
No 232
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.03 E-value=0.002 Score=64.83 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=52.8
Q ss_pred CcEEEEEECCCCceEEEEecCC-eEEEEEe---cCcEEEEEeCCeEEEEeCCCCceeEEEEcCCCC
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRS-TVYMVRC---SPRIVAVGLAAQIYCFDALTLESKFSVLTYPVP 240 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~---s~~~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~ 240 (627)
++.+.-||+++|+.-++++.++ -|.+|.. ++++|.-+-++.++|||..|.++...|.-+.+|
T Consensus 135 D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~ 200 (325)
T KOG0649|consen 135 DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP 200 (325)
T ss_pred CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccCh
Confidence 4779999999999999999665 7888776 347888888899999999999999999877655
No 233
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.01 E-value=8.7e-05 Score=77.96 Aligned_cols=79 Identities=20% Similarity=0.330 Sum_probs=61.8
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEc
Q 046828 379 SQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFS 458 (627)
Q Consensus 379 ~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFS 458 (627)
..-++| .+|++|++++||+.|+|||.+-..|+|||.. +|.. ..+. .+|. ..+.-+.||
T Consensus 190 l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpd-------tg~~----------~pL~--~~gl--gg~slLkwS 247 (445)
T KOG2139|consen 190 LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPD-------TGQK----------IPLI--PKGL--GGFSLLKWS 247 (445)
T ss_pred eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCC-------CCCc----------cccc--ccCC--CceeeEEEc
Confidence 344456 7899999999999999999988889999975 2321 1232 2332 348889999
Q ss_pred cCCCEEEEEeCCCeEEEEEcC
Q 046828 459 HYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 459 pDg~~Las~S~dgTvhIw~i~ 479 (627)
||+.+|.+++-|++.+||+.+
T Consensus 248 Pdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 248 PDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred CCCCEEEEecccceeeeehhc
Confidence 999999999999999999544
No 234
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.00 E-value=7.8e-05 Score=86.86 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=78.8
Q ss_pred CCCCeEEEEECCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 362 DIAGMVVVKDIVSRSVIS-QFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~-~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
+.|-.+++|++.+.+.+. +--+|+..|..++|.|+ +|+|+++|=| .|+|+.. +. .
T Consensus 194 SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct-crvW~~~--------~~-------------~ 249 (967)
T KOG0974|consen 194 SDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT-CRVWGVN--------GT-------------Q 249 (967)
T ss_pred ecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE-EEEEecc--------cc-------------e
Confidence 467789999999988765 66689999999999999 9999999987 7999763 21 1
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
.+..++|-...|+.++..++.-++.++..||++++|++...+.
T Consensus 250 l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 250 LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence 1122344333499999999999999999999999999976543
No 235
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.94 E-value=0.00016 Score=79.83 Aligned_cols=182 Identities=15% Similarity=0.196 Sum_probs=124.9
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
..++++|...-+.-++++. +.+..-+....+.+.++.+.+.. -|||+ + +
T Consensus 146 cDly~~gsg~evYRlNLEq-GrfL~P~~~~~~~lN~v~in~~h-------------gLla~-G-------t--------- 194 (703)
T KOG2321|consen 146 CDLYLVGSGSEVYRLNLEQ-GRFLNPFETDSGELNVVSINEEH-------------GLLAC-G-------T--------- 194 (703)
T ss_pred ccEEEeecCcceEEEEccc-cccccccccccccceeeeecCcc-------------ceEEe-c-------c---------
Confidence 6688888888888888886 44555555555778888887654 45542 1 1
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCe------------EEEEEecC--cEEEEEe-CCeEEEEeC
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRST------------VYMVRCSP--RIVAVGL-AAQIYCFDA 225 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~------------V~sV~~s~--~~LaV~~-~~~I~i~D~ 225 (627)
.+++|.+||.++.+.+.+|...+. |.++.|+. -.++||. .+.|+|||+
T Consensus 195 -----------------~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 195 -----------------EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL 257 (703)
T ss_pred -----------------cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEc
Confidence 137899999999999999987666 89999976 5678886 568999999
Q ss_pred CCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhh
Q 046828 226 LTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYA 305 (627)
Q Consensus 226 ~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a 305 (627)
++-+.+.. ..|... .++. .|.+-..+.
T Consensus 258 Ra~~pl~~-kdh~~e-------------~pi~-----~l~~~~~~~---------------------------------- 284 (703)
T KOG2321|consen 258 RASKPLLV-KDHGYE-------------LPIK-----KLDWQDTDQ---------------------------------- 284 (703)
T ss_pred ccCCceee-cccCCc-------------ccee-----eecccccCC----------------------------------
Confidence 99876543 333221 1111 122211000
Q ss_pred hhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCC
Q 046828 306 VESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHT 385 (627)
Q Consensus 306 ~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~ 385 (627)
. .++ ......+++|||-.+++..+.+.. +
T Consensus 285 -----------------q-~~v--------------------------------~S~Dk~~~kiWd~~~Gk~~asiEp-t 313 (703)
T KOG2321|consen 285 -----------------Q-NKV--------------------------------VSMDKRILKIWDECTGKPMASIEP-T 313 (703)
T ss_pred -----------------C-ceE--------------------------------EecchHHhhhcccccCCceeeccc-c
Confidence 0 000 012345789999999999888886 4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
..|..+||-|++-++.+|-+.+. |..|=|
T Consensus 314 ~~lND~C~~p~sGm~f~Ane~~~-m~~yyi 342 (703)
T KOG2321|consen 314 SDLNDFCFVPGSGMFFTANESSK-MHTYYI 342 (703)
T ss_pred CCcCceeeecCCceEEEecCCCc-ceeEEc
Confidence 56999999999999999999887 555544
No 236
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.94 E-value=0.011 Score=65.38 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=37.2
Q ss_pred EEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeC----CeEEEEeCCCCce
Q 046828 181 AVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLA----AQIYCFDALTLES 230 (627)
Q Consensus 181 tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~----~~I~i~D~~t~e~ 230 (627)
.|-++|+.+++...-..++..+...++++ +.|+.... .+|+++|+.+++.
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~ 269 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL 269 (419)
T ss_pred EEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE
Confidence 48999999998766556777677778887 56665543 3699999988763
No 237
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.94 E-value=0.0013 Score=78.20 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=61.7
Q ss_pred CCeEEEEECCCCeEEEEec-cCCCCeEEEEECCCC---CEEEEEeC--CCCEEEEEeCCCCCCCCCCCCCcccc-CCCCc
Q 046828 364 AGMVVVKDIVSRSVISQFR-AHTSPISALCFDRSG---TLLVTASI--HGNNINIFRIMPSSSKGRSGSASQTY-DWTSS 436 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~-aH~~~Is~laFspdG---~lLaTaS~--dGt~I~Vwdi~p~~~~~~~g~~~~~~-~~~~~ 436 (627)
.|.+.+||++=+.++.... +|..+|..|+.+|-- ...++++. .+. +-+|++. .+.+ ......+ +.+.
T Consensus 1216 ~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne-vs~wn~~-~g~~---~~vl~~s~~~p~- 1289 (1431)
T KOG1240|consen 1216 RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE-VSTWNME-TGLR---QTVLWASDGAPI- 1289 (1431)
T ss_pred CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc-eeeeecc-cCcc---eEEEEcCCCCcc-
Confidence 4678999999887777655 556788888877643 45555554 333 7899986 2111 0000000 0000
Q ss_pred eeEEEEEe--ecCCcCc--EEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 437 HVHLYKLH--RGMTSAV--IQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 437 ~~~l~~l~--rG~t~a~--I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.-+.+- +...+.. ....++..-+.++.+++.|..|+.||....
T Consensus 1290 --ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1290 --LSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred --hhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 000000 0000111 233455556678999999999999998654
No 238
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=9.8e-05 Score=81.22 Aligned_cols=55 Identities=16% Similarity=0.363 Sum_probs=51.9
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
+.++++|+++|..+++.++...+|...++++++.|+|-+|++++.||. +++|.+.
T Consensus 507 ~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld 561 (577)
T KOG0642|consen 507 AHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLD 561 (577)
T ss_pred cccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhcc
Confidence 458999999999999999999999999999999999999999999998 7999885
No 239
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.91 E-value=0.0012 Score=73.22 Aligned_cols=75 Identities=20% Similarity=0.151 Sum_probs=45.8
Q ss_pred CeEEEEECCCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEE
Q 046828 387 PISALCFDRSGTLLVTASI-HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIA 465 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~-dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~La 465 (627)
.....+|+|||+.|+..+. +|. .+||.+.... .+. ....+..+ . ..+...+|||||++|+
T Consensus 282 ~~~~p~wSPDG~~Laf~s~~~g~-~~ly~~~~~~----~g~------------~~~~lt~~-~-~~~~~p~wSPDG~~La 342 (428)
T PRK01029 282 TQGNPSFSPDGTRLVFVSNKDGR-PRIYIMQIDP----EGQ------------SPRLLTKK-Y-RNSSCPAWSPDGKKIA 342 (428)
T ss_pred CcCCeEECCCCCEEEEEECCCCC-ceEEEEECcc----ccc------------ceEEeccC-C-CCccceeECCCCCEEE
Confidence 3456799999998887774 565 4677542110 010 12222111 1 2367889999999999
Q ss_pred EEeCCC---eEEEEEcCC
Q 046828 466 IVSSRG---TCHIFVLTP 480 (627)
Q Consensus 466 s~S~dg---TvhIw~i~~ 480 (627)
..+.++ .|++|++..
T Consensus 343 f~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 343 FCSVIKGVRQICVYDLAT 360 (428)
T ss_pred EEEcCCCCcEEEEEECCC
Confidence 876642 467777653
No 240
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.88 E-value=2.2e-05 Score=85.75 Aligned_cols=102 Identities=12% Similarity=0.216 Sum_probs=80.3
Q ss_pred cCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 359 SDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 359 ~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
+..++||.+||+|..+.+.+..++..=..+.|++|||||++|+|+.+|- ++.||... . .
T Consensus 306 A~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD-LVtVwSf~-e-------------------r 364 (636)
T KOG2394|consen 306 ATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD-LVTVWSFE-E-------------------R 364 (636)
T ss_pred EEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc-eEEEEEec-c-------------------c
Confidence 4568999999999999998888888888899999999999999999995 68999985 2 1
Q ss_pred EEEEEeecCCcCcEEEEEEcc------------------------------------------------CCCEEEEEeCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSH------------------------------------------------YSQWIAIVSSR 470 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSp------------------------------------------------Dg~~Las~S~d 470 (627)
++...-.||.. +|..++|.| .--.+.+++.|
T Consensus 365 RVVARGqGHkS-WVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqD 443 (636)
T KOG2394|consen 365 RVVARGQGHKS-WVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQD 443 (636)
T ss_pred eEEEecccccc-ceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeeccccc
Confidence 44443346543 588888872 11356778888
Q ss_pred CeEEEEEcCCCC
Q 046828 471 GTCHIFVLTPFG 482 (627)
Q Consensus 471 gTvhIw~i~~~g 482 (627)
-.+-|||+....
T Consensus 444 TqlcLWDlteD~ 455 (636)
T KOG2394|consen 444 TQLCLWDLTEDV 455 (636)
T ss_pred ceEEEEecchhh
Confidence 889999997654
No 241
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=0.0011 Score=73.13 Aligned_cols=132 Identities=19% Similarity=0.239 Sum_probs=91.7
Q ss_pred CCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe---CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcC
Q 046828 175 VAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL---AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSG 249 (627)
Q Consensus 175 ~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~---~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~ 249 (627)
+.|...++.+++....+.+-.|.-.++|++|.+|+ +-.+|+- -.+|.|||+.. ..++.+-.-|
T Consensus 246 SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~egp----------- 313 (566)
T KOG2315|consen 246 SYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFPEGP----------- 313 (566)
T ss_pred cccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCCCCC-----------
Confidence 45667899999999777888888889999999997 4455543 45799999863 3444442211
Q ss_pred cccccceeeEc--CceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEE
Q 046828 250 VNIGYGPMAVG--PRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTL 327 (627)
Q Consensus 250 ~~~~~~~iAl~--~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~ 327 (627)
.+.+-++ ++.|..++
T Consensus 314 ----RN~~~fnp~g~ii~lAG----------------------------------------------------------- 330 (566)
T KOG2315|consen 314 ----RNTAFFNPHGNIILLAG----------------------------------------------------------- 330 (566)
T ss_pred ----ccceEECCCCCEEEEee-----------------------------------------------------------
Confidence 1112121 23444332
Q ss_pred eeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC-
Q 046828 328 SRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH- 406 (627)
Q Consensus 328 s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d- 406 (627)
-+.-.|.|-|||..+.+.+..+.+-.. +...|+|||.++.||..-
T Consensus 331 --------------------------------FGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 331 --------------------------------FGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred --------------------------------cCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccc
Confidence 123568899999999999999997654 557899999999999763
Q ss_pred -----CCEEEEEeCC
Q 046828 407 -----GNNINIFRIM 416 (627)
Q Consensus 407 -----Gt~I~Vwdi~ 416 (627)
.- |+||+..
T Consensus 377 RlrvdNg-~Kiwhyt 390 (566)
T KOG2315|consen 377 RLRVDNG-IKIWHYT 390 (566)
T ss_pred cEEecCC-eEEEEec
Confidence 22 7999973
No 242
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.85 E-value=0.00059 Score=76.38 Aligned_cols=257 Identities=16% Similarity=0.171 Sum_probs=148.5
Q ss_pred EEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCccc
Q 046828 83 VLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGL 162 (627)
Q Consensus 83 vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~ 162 (627)
=|+++-++.+-|||+++++ ....+..|...|.+|++..+. .+.|. |
T Consensus 26 qL~lAAg~rlliyD~ndG~-llqtLKgHKDtVycVAys~dG-------------krFAS---------G----------- 71 (1081)
T KOG1538|consen 26 QLILAAGSRLLVYDTSDGT-LLQPLKGHKDTVYCVAYAKDG-------------KRFAS---------G----------- 71 (1081)
T ss_pred eEEEecCCEEEEEeCCCcc-cccccccccceEEEEEEccCC-------------ceecc---------C-----------
Confidence 3555667889999999966 456677788899999886432 23221 1
Q ss_pred ccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCCeEEEEeCCCCceeEEEEcCCCC
Q 046828 163 VRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAAQIYCFDALTLESKFSVLTYPVP 240 (627)
Q Consensus 163 ~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~ 240 (627)
.++..|.+|+.+ .+-+-.+.+...|.++.||| ..|+++.-...-+|.+..-... -|-..
T Consensus 72 --------------~aDK~VI~W~~k-lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~----K~kss 132 (1081)
T KOG1538|consen 72 --------------SADKSVIIWTSK-LEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS----KHKSS 132 (1081)
T ss_pred --------------CCceeEEEeccc-ccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH----hhhhh
Confidence 135889999854 33344455777999999999 7888887777778876542110 00000
Q ss_pred CCCCCCCcCcccccceeeE--cCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceee
Q 046828 241 HFGGQGTSGVNIGYGPMAV--GPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLIN 318 (627)
Q Consensus 241 ~~~~~g~~~~~~~~~~iAl--~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~ 318 (627)
......+. .+.+||.+-.+.++++...
T Consensus 133 -----------~R~~~CsWtnDGqylalG~~nGTIsiRNk---------------------------------------- 161 (1081)
T KOG1538|consen 133 -----------SRIICCSWTNDGQYLALGMFNGTISIRNK---------------------------------------- 161 (1081)
T ss_pred -----------eeEEEeeecCCCcEEEEeccCceEEeecC----------------------------------------
Confidence 00111222 3467777655444332110
Q ss_pred cCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC--------CCeEEEEeccCCCCeEE
Q 046828 319 LGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV--------SRSVISQFRAHTSPISA 390 (627)
Q Consensus 319 lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~--------s~~~l~~~~aH~~~Is~ 390 (627)
.||...+ + ..|.|+.++.-. ..|.+.. ..+.+.++-|.|-. +++.+..-++-.-.-.|
T Consensus 162 ~gEek~~-I------~Rpgg~Nspiws-i~~~p~s------g~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~C 227 (1081)
T KOG1538|consen 162 NGEEKVK-I------ERPGGSNSPIWS-ICWNPSS------GEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCC 227 (1081)
T ss_pred CCCcceE-E------eCCCCCCCCceE-EEecCCC------CCCccceEEEEeccceeEEEEecceeecccccCCCCchh
Confidence 0111000 0 012222221100 0011100 01123334444432 23333322223334468
Q ss_pred EEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC
Q 046828 391 LCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR 470 (627)
Q Consensus 391 laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d 470 (627)
|.+-++|.++..|+.|+. +++|--+ | .++-.+-. -...|+.++..|+++++++|.-|
T Consensus 228 isYf~NGEy~LiGGsdk~-L~~fTR~--------G------------vrLGTvg~--~D~WIWtV~~~PNsQ~v~~GCqD 284 (1081)
T KOG1538|consen 228 ISYFTNGEYILLGGSDKQ-LSLFTRD--------G------------VRLGTVGE--QDSWIWTVQAKPNSQYVVVGCQD 284 (1081)
T ss_pred heeccCCcEEEEccCCCc-eEEEeec--------C------------eEEeeccc--cceeEEEEEEccCCceEEEEEcc
Confidence 899999999999999987 6888532 3 35555532 33469999999999999999999
Q ss_pred CeEEEEEcCC
Q 046828 471 GTCHIFVLTP 480 (627)
Q Consensus 471 gTvhIw~i~~ 480 (627)
||+--|++-.
T Consensus 285 GTiACyNl~f 294 (1081)
T KOG1538|consen 285 GTIACYNLIF 294 (1081)
T ss_pred CeeehhhhHH
Confidence 9999998854
No 243
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.84 E-value=0.00026 Score=74.04 Aligned_cols=220 Identities=15% Similarity=0.241 Sum_probs=135.1
Q ss_pred CCcEEEEEE-CCCCceEEEEe--cCCeEEEEEecC--cEEEEEeCC-eEEEEeCC-CCceeEEEEcCCCCCCCCCCCcCc
Q 046828 178 SPTAVRFYS-LRSHNYVHVLR--FRSTVYMVRCSP--RIVAVGLAA-QIYCFDAL-TLESKFSVLTYPVPHFGGQGTSGV 250 (627)
Q Consensus 178 ~~~tV~lwd-l~t~~~V~tL~--f~s~V~sV~~s~--~~LaV~~~~-~I~i~D~~-t~e~~~tl~~~p~~~~~~~g~~~~ 250 (627)
.+.+||||= ...+++-..+. .++++.++.... ++|.++++. .+.-|.+. +++..-.++.+..-+ +.
T Consensus 44 ~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~-------~~ 116 (404)
T KOG1409|consen 44 EDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQ-------AR 116 (404)
T ss_pred ccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhh-------cc
Confidence 468999994 55788887776 467888888876 889999864 67777543 333333333332110 00
Q ss_pred ccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeee
Q 046828 251 NIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRY 330 (627)
Q Consensus 251 ~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y 330 (627)
+.--.+++.+.|+-..+.++-+.- + ...+|..+.+|.+++--.-.+ -+..|
T Consensus 117 -v~~~if~~~~e~V~s~~~dk~~~~--------h---------c~e~~~~lg~Y~~~~~~t~~~-----~d~~~------ 167 (404)
T KOG1409|consen 117 -VSAIVFSLTHEWVLSTGKDKQFAW--------H---------CTESGNRLGGYNFETPASALQ-----FDALY------ 167 (404)
T ss_pred -eeeEEecCCceeEEEeccccceEE--------E---------eeccCCcccceEeeccCCCCc-----eeeEE------
Confidence 012235667788888775543210 0 001122222222221100000 00000
Q ss_pred eccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE--EECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCC
Q 046828 331 YQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV--KDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGN 408 (627)
Q Consensus 331 ~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I--wD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt 408 (627)
.-.+...|.|.+ .+......+.++.+|..+|.+++|+|...+|.+++.|-.
T Consensus 168 ---------------------------~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~ 220 (404)
T KOG1409|consen 168 ---------------------------AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS 220 (404)
T ss_pred ---------------------------EEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc
Confidence 012334455544 334455789999999999999999999999999999965
Q ss_pred EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 409 NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 409 ~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
+.+|||- -. .| ..++++ |+. ..|+.+..-+--+.|.+.+.||.|-+|+++-.
T Consensus 221 -vi~wdig-g~----~g-------------~~~el~-gh~-~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 221 -VIMWDIG-GR----KG-------------TAYELQ-GHN-DKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred -eEEEecc-CC----cc-------------eeeeec-cch-hhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 7899994 21 23 456664 443 35888888888889999999999999999753
No 244
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=5.1e-05 Score=83.13 Aligned_cols=169 Identities=14% Similarity=0.163 Sum_probs=116.4
Q ss_pred EEEecC-CeEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEEc-CCCCCCCCCCCcCcccccceeeEcCceEEEcC
Q 046828 194 HVLRFR-STVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVLT-YPVPHFGGQGTSGVNIGYGPMAVGPRWLAYAS 268 (627)
Q Consensus 194 ~tL~f~-s~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~~-~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~ 268 (627)
++|..+ +-|.+++++. .+|++|.++ +|.|||.-.-+.++.|.+ |. -++|++ ++|-|..
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHt---------------aNIFsv--KFvP~tn 106 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHT---------------ANIFSV--KFVPYTN 106 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccc---------------cceeEE--eeeccCC
Confidence 456644 5899999986 899999887 699999998888888875 32 134444 4554443
Q ss_pred CCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCc
Q 046828 269 NNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSS 348 (627)
Q Consensus 269 ~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~ 348 (627)
+..+
T Consensus 107 nriv---------------------------------------------------------------------------- 110 (758)
T KOG1310|consen 107 NRIV---------------------------------------------------------------------------- 110 (758)
T ss_pred CeEE----------------------------------------------------------------------------
Confidence 2100
Q ss_pred cccCcccccccCCCCCCeEEEEECCC----------CeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCC
Q 046828 349 WKAGRNASHSSDTDIAGMVVVKDIVS----------RSVISQFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMP 417 (627)
Q Consensus 349 ~~~g~~~~~~~~~~~dG~V~IwD~~s----------~~~l~~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p 417 (627)
.++..|..|+++|+.. .+....+..|+..|-.|+--|+| ..+-+||+||+ ||-+|+.
T Consensus 111 ----------~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt-irQyDiR- 178 (758)
T KOG1310|consen 111 ----------LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT-IRQYDIR- 178 (758)
T ss_pred ----------EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc-eeeeccc-
Confidence 0234677888888874 24566778899999999999999 88999999999 8999996
Q ss_pred CCCC-CCCCCCccccCCCCceeEEEEEeecC-CcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcC
Q 046828 418 SSSK-GRSGSASQTYDWTSSHVHLYKLHRGM-TSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 418 ~~~~-~~~g~~~~~~~~~~~~~~l~~l~rG~-t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~ 479 (627)
+++. ...+. ...++..-. .--...++..|| +-.+||+|+.|--.++||+.
T Consensus 179 Eph~c~p~~~------------~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 179 EPHVCNPDED------------CPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred CCccCCcccc------------ccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 4321 00110 011110000 001268899999 66799999999999999953
No 245
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.0017 Score=68.99 Aligned_cols=54 Identities=13% Similarity=0.258 Sum_probs=48.3
Q ss_pred CCCCeEEEEECCCCeEEEE-eccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 362 DIAGMVVVKDIVSRSVISQ-FRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~-~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
..-|.+..+|+..++.+.. |++-++.|+.|--+|++.+||+++-|.. +||||+.
T Consensus 266 n~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~k 320 (412)
T KOG3881|consen 266 NTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIK 320 (412)
T ss_pred cccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee-EEEeecc
Confidence 4567888999999988776 8888999999999999999999999975 8999997
No 246
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.0021 Score=71.40 Aligned_cols=97 Identities=16% Similarity=0.310 Sum_probs=78.0
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
+.+.|++|..|+...++.++.+++-+..+..++.+|||.+|++||.. |++||++ ++ .
T Consensus 119 S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~~---ik~~~~~-------~k-------------e 175 (541)
T KOG4547|consen 119 SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASRQ---IKVLDIE-------TK-------------E 175 (541)
T ss_pred ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccce---EEEEEcc-------Cc-------------e
Confidence 35678999999999999999999999999999999999999999954 8999997 22 5
Q ss_pred EEEEeecCCcCcEEEEEEccC-----CCEEEEEeC-CCeEEEEEcCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHY-----SQWIAIVSS-RGTCHIFVLTP 480 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpD-----g~~Las~S~-dgTvhIw~i~~ 480 (627)
+++-+.||- ..|.+++|--+ |+++.++-. ..-+-+|.+..
T Consensus 176 vv~~ftgh~-s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 176 VVITFTGHG-SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEecCCC-cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 666668875 46999999988 777766544 33356677654
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.78 E-value=0.00012 Score=85.34 Aligned_cols=97 Identities=19% Similarity=0.249 Sum_probs=76.3
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
.+..-|.|.+|+..-.+.-..+.+|...|-++.|+-||++++|.|+|.+ +|+|+++....
T Consensus 150 ~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs-iRlW~i~s~~~------------------- 209 (967)
T KOG0974|consen 150 SGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRS-IRLWPIDSREV------------------- 209 (967)
T ss_pred eccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcc-eeeeecccccc-------------------
Confidence 3456688999998744333368999999999999999999999999987 89999972211
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
+.-.--|| .|+|+.++|.|. .|++++.|-|+++|..+
T Consensus 210 ~~~~~fgH-saRvw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 210 LGCTGFGH-SARVWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred cCcccccc-cceeEEEEeccc--eeEEeccceEEEEEecc
Confidence 10011355 478999999999 99999999999999543
No 248
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.77 E-value=0.00039 Score=80.33 Aligned_cols=185 Identities=15% Similarity=0.142 Sum_probs=135.9
Q ss_pred CcEEEEEECCCCceEEEEecCC-eEEEEEecCcEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccce
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSPRIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGP 256 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~ 256 (627)
+..+..+|+++.++.+.....+ .|.=|+-|.|.+..| ..++|.+-|..+++.++++..|... +..
T Consensus 156 Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s-------------iSD 222 (1118)
T KOG1275|consen 156 QEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS-------------ISD 222 (1118)
T ss_pred hhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccc-------------eee
Confidence 4678889999999999888765 688888888888887 5679999999999999999998753 445
Q ss_pred eeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccC
Q 046828 257 MAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIP 336 (627)
Q Consensus 257 iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p 336 (627)
|.+.+..|+.++... |.
T Consensus 223 fDv~GNlLitCG~S~------R~--------------------------------------------------------- 239 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSM------RR--------------------------------------------------------- 239 (1118)
T ss_pred eeccCCeEEEeeccc------cc---------------------------------------------------------
Confidence 778778888776321 10
Q ss_pred CCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeC
Q 046828 337 DGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRS-GTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 337 ~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi 415 (627)
+ .-..|--|+|||++..+.+.-+.-|..| ..+.|.|. -+.+|.+|..|. +.+-|.
T Consensus 240 ---------------~-------~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq-~q~vd~ 295 (1118)
T KOG1275|consen 240 ---------------Y-------NLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ-FQFVDT 295 (1118)
T ss_pred ---------------c-------cccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc-eeeccc
Confidence 0 0124667999999999888877777776 77889997 467888999998 577673
Q ss_pred CCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 416 MPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 416 ~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
. .- + ++.. ..+.+. ....-|..+++|+.++.+|.+..+|-||+|.=.+
T Consensus 296 ~-~l-----s------NP~~---~~~~v~--p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 296 A-TL-----S------NPPA---GVKMVN--PNGSGISAFDISSNGDALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred c-cc-----C------CCcc---ceeEEc--cCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence 2 00 0 0111 112111 1112389999999999999999999999999433
No 249
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.73 E-value=0.00016 Score=51.79 Aligned_cols=36 Identities=31% Similarity=0.443 Sum_probs=31.0
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
+..+ +||.. .|.+|+|+|++++|++++.|++|+||+
T Consensus 4 ~~~~-~~h~~-~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTF-RGHSS-SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEE-ESSSS-SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEE-cCCCC-cEEEEEEecccccceeeCCCCEEEEEC
Confidence 3444 67754 599999999999999999999999997
No 250
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.73 E-value=0.00026 Score=75.37 Aligned_cols=99 Identities=13% Similarity=0.090 Sum_probs=73.0
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
....+.+|....+. ...+.+|-+-+..|+|+||+++|.||+.|++ |||-.. |.+. -+..
T Consensus 130 D~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~y-pa~f------------------~Ies 188 (390)
T KOG3914|consen 130 DVYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRY-PATF------------------VIES 188 (390)
T ss_pred CceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCce-EEEEec-Cccc------------------chhh
Confidence 44455666655432 3456789999999999999999999999997 788765 3321 2333
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
+--||+. =|..|+.-++ +.|+++|.|+|+++|++.....+
T Consensus 189 fclGH~e-FVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 189 FCLGHKE-FVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred hccccHh-heeeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence 4457764 3888887665 56999999999999999876554
No 251
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.65 E-value=0.0046 Score=65.75 Aligned_cols=235 Identities=15% Similarity=0.137 Sum_probs=130.2
Q ss_pred cEEEEEECCCCceEEEEecCC---eEEEEEecC--cEEEEEe-CCeEEEEeCCCCce---eEEEEcCCCCCCCCCCCcCc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS---TVYMVRCSP--RIVAVGL-AAQIYCFDALTLES---KFSVLTYPVPHFGGQGTSGV 250 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s---~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~---~~tl~~~p~~~~~~~g~~~~ 250 (627)
.+|.+-|+++.+-+-...... .||.+..+| .+++|.. ++.|-+||.+..+. ++.+..++..
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~---------- 196 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKN---------- 196 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcc----------
Confidence 679999999999888877554 899999998 6777665 55799999987653 2222223221
Q ss_pred ccccceeeE---cCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhc-ceeecCCcceeE
Q 046828 251 NIGYGPMAV---GPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAA-GLINLGDMGYKT 326 (627)
Q Consensus 251 ~~~~~~iAl---~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~-gl~~lg~~g~~~ 326 (627)
...+-+ -|++||.+....-+.+|.+..+|. -+..|.+. +.|-+ ...|+
T Consensus 197 ---F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~----------------~~~~~~~~--~~L~~~~~~~M------- 248 (609)
T KOG4227|consen 197 ---FYTAEFHPETPALILVNSETGGPNVFDRRMQAR----------------PVYQRSMF--KGLPQENTEWM------- 248 (609)
T ss_pred ---ceeeeecCCCceeEEeccccCCCCceeeccccc----------------hHHhhhcc--ccCcccchhhh-------
Confidence 111222 358899887654444444332210 00000000 00000 00000
Q ss_pred EeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeE-EEEeccCC-------CCeEEEEECCCCC
Q 046828 327 LSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSV-ISQFRAHT-------SPISALCFDRSGT 398 (627)
Q Consensus 327 ~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~-l~~~~aH~-------~~Is~laFspdG~ 398 (627)
...|+ |.|+ +|.+ -..----.+||+.+.++ +..+ .|. ..|-+++|--|-+
T Consensus 249 -~~~~~---~~G~-------------Q~ms----iRR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~~D~~ 306 (609)
T KOG4227|consen 249 -GSLWS---PSGN-------------QFMS----IRRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIKTIKSMTFIDDYT 306 (609)
T ss_pred -heeeC---CCCC-------------eehh----hhccCCCEEeeeecccceeEec-cCCCCcceeeeeeeeeeeeccee
Confidence 00110 1110 1110 01111234688877543 2223 232 2477889987766
Q ss_pred EEEEEeCCCCEEEEEeCCCCCCCCCCCCCcc----ccCCCCc--eeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCe
Q 046828 399 LLVTASIHGNNINIFRIMPSSSKGRSGSASQ----TYDWTSS--HVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGT 472 (627)
Q Consensus 399 lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~----~~~~~~~--~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgT 472 (627)
++|+|++=. |++|.+ |.... .+...+ +...+.. ...-+...|||. ..+..+.|+|-...|++++-...
T Consensus 307 -v~tGSD~~~-i~~Wkl-P~~~d--s~G~~~IG~~~~~~~~~~~i~~~~~VLrGHR-Sv~NQVRF~~H~~~l~SSGVE~~ 380 (609)
T KOG4227|consen 307 -VATGSDHWG-IHIWKL-PRAND--SYGFTQIGHDEEEMPSEIFIEKELTVLRGHR-SVPNQVRFSQHNNLLVSSGVENS 380 (609)
T ss_pred -eeccCcccc-eEEEec-CCCcc--ccCccccCcchhhCchhheecceeEEEeccc-ccccceeecCCcceEeccchhhh
Confidence 899999865 899999 43321 121111 1122222 123344568885 46899999999999999999999
Q ss_pred EEEEEcCC
Q 046828 473 CHIFVLTP 480 (627)
Q Consensus 473 vhIw~i~~ 480 (627)
++||.-..
T Consensus 381 ~KlWS~~r 388 (609)
T KOG4227|consen 381 FKLWSDHR 388 (609)
T ss_pred eecccccc
Confidence 99997543
No 252
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.64 E-value=0.00088 Score=69.85 Aligned_cols=93 Identities=14% Similarity=0.233 Sum_probs=64.3
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC-----------------------------------C
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI-----------------------------------H 406 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~-----------------------------------d 406 (627)
+.+-.|.||.+.+.+.. .++-....+.-++|+|||++.|.++. |
T Consensus 111 eF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd 189 (447)
T KOG4497|consen 111 EFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD 189 (447)
T ss_pred cceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC
Confidence 35667889998876543 23322345688899999999888865 3
Q ss_pred CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 407 GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 407 Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
|..+-|||.--+ -+++...||. .|..++|||.+++||+|+.|+.++|.+
T Consensus 190 g~~laVwd~~Le-------------------ykv~aYe~~l---G~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 190 GNWLAVWDNVLE-------------------YKVYAYERGL---GLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred CcEEEEecchhh-------------------heeeeeeecc---ceeEEEeccccceEEeeccchhhhhhc
Confidence 444445553211 1344455654 389999999999999999999999844
No 253
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.62 E-value=0.0023 Score=66.58 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=61.6
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce---eEEEEEeecCCcCcEEEEEEc
Q 046828 382 RAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH---VHLYKLHRGMTSAVIQDICFS 458 (627)
Q Consensus 382 ~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~---~~l~~l~rG~t~a~I~sIaFS 458 (627)
+.+.+.|.+|.|.|++-+||++|.||. .|||...- ... .... +...|.+.. +...++. .....|..+.||
T Consensus 143 kPirStv~sldWhpnnVLlaaGs~D~k-~rVfSayI-K~V--dekp-ap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs 215 (361)
T KOG1523|consen 143 KPIRSTVTSLDWHPNNVLLAAGSTDGK-CRVFSAYI-KGV--DEKP-APTPWGSKMPFGQLMSEAS--SSGGWVHGVLFS 215 (361)
T ss_pred CccccceeeeeccCCcceecccccCcc-eeEEEEee-ecc--ccCC-CCCCCccCCcHHHHHHhhc--cCCCceeeeEeC
Confidence 367889999999999999999999998 79995320 000 0000 011222221 1223332 233569999999
Q ss_pred cCCCEEEEEeCCCeEEEEEcC
Q 046828 459 HYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 459 pDg~~Las~S~dgTvhIw~i~ 479 (627)
|+|..||-.+.|+++-+=+-.
T Consensus 216 ~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 216 PSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred CCCCEeeEecCCCceEEeecC
Confidence 999999999999999876654
No 254
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.62 E-value=0.028 Score=61.39 Aligned_cols=77 Identities=18% Similarity=0.265 Sum_probs=52.9
Q ss_pred EEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccccee
Q 046828 181 AVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPM 257 (627)
Q Consensus 181 tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~i 257 (627)
.|-|||.++++.-.-.+--+.|.+|.+++ +.++++.+. +|.++|+.++... .+.-. - .|+ ..-|
T Consensus 383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~-~idkS-~-----~~l------Itdf 449 (668)
T COG4946 383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR-LIDKS-E-----YGL------ITDF 449 (668)
T ss_pred eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee-Eeccc-c-----cce------eEEE
Confidence 58999999988655555557899999987 678887665 8999999998642 22111 0 011 2235
Q ss_pred eEcC--ceEEEcCCC
Q 046828 258 AVGP--RWLAYASNN 270 (627)
Q Consensus 258 Al~~--r~LAy~~~~ 270 (627)
+++| ||+||+-..
T Consensus 450 ~~~~nsr~iAYafP~ 464 (668)
T COG4946 450 DWHPNSRWIAYAFPE 464 (668)
T ss_pred EEcCCceeEEEecCc
Confidence 6655 999999643
No 255
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.58 E-value=0.0011 Score=72.96 Aligned_cols=86 Identities=17% Similarity=0.308 Sum_probs=62.3
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
.|.+.|--+.....+...++|.+-|.++.|++...++++|++|-. ++|||-. |. .++.-
T Consensus 165 g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD~~--------G~------------~Lf~S 223 (737)
T KOG1524|consen 165 GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWDAQ--------GA------------NLFTS 223 (737)
T ss_pred CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee-EEeeccc--------Cc------------ccccC
Confidence 345666666655566778999999999999999999999999987 8999964 32 33322
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCeEE
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGTCH 474 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgTvh 474 (627)
. -+ ...|++|+|.|| +.++.+|. .|.+
T Consensus 224 ~-~~-ey~ITSva~npd-~~~~v~S~-nt~R 250 (737)
T KOG1524|consen 224 A-AE-EYAITSVAFNPE-KDYLLWSY-NTAR 250 (737)
T ss_pred C-hh-ccceeeeeeccc-cceeeeee-eeee
Confidence 1 11 234999999999 66666653 3444
No 256
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.58 E-value=8.5e-05 Score=80.10 Aligned_cols=230 Identities=20% Similarity=0.326 Sum_probs=150.0
Q ss_pred CCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
..++++++..+-+.|||=.-.. ...+- +...|.-++|+|-. +|++.+ .+
T Consensus 181 neq~~AVAQK~y~yvYD~~GtE--lHClk-~~~~v~rLeFLPyH--------------fLL~~~-~~------------- 229 (545)
T KOG1272|consen 181 NEQFFAVAQKKYVYVYDNNGTE--LHCLK-RHIRVARLEFLPYH--------------FLLVAA-SE------------- 229 (545)
T ss_pred chHHHHhhhhceEEEecCCCcE--Eeehh-hcCchhhhcccchh--------------heeeec-cc-------------
Confidence 3678899999999999955321 23333 34567778888764 233222 11
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecCc--EEEEE-eCCeEEEEeCCCCceeEEEE
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSPR--IVAVG-LAAQIYCFDALTLESKFSVL 235 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~~--~LaV~-~~~~I~i~D~~t~e~~~tl~ 235 (627)
.+-++.-|..+|+.|..+.-+ ..+..+.-||. +|-+| ..++|-+|....-|.+-.++
T Consensus 230 -------------------~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL 290 (545)
T KOG1272|consen 230 -------------------AGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL 290 (545)
T ss_pred -------------------CCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH
Confidence 144888899999999998754 47888888884 44455 35689999999999888888
Q ss_pred cCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhh
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLA 313 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~ 313 (627)
+|..| +..+|+.+ +++|.
T Consensus 291 cH~g~-------------V~siAv~~~G~YMaT----------------------------------------------- 310 (545)
T KOG1272|consen 291 CHRGP-------------VSSIAVDRGGRYMAT----------------------------------------------- 310 (545)
T ss_pred hcCCC-------------cceEEECCCCcEEee-----------------------------------------------
Confidence 88765 44455532 33332
Q ss_pred cceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEE
Q 046828 314 AGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCF 393 (627)
Q Consensus 314 ~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laF 393 (627)
++.|..|+|||+.+-..+.++.. ..+.+.++|
T Consensus 311 -----------------------------------------------tG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~ 342 (545)
T KOG1272|consen 311 -----------------------------------------------TGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSL 342 (545)
T ss_pred -----------------------------------------------cccccceeEeeeccccccceeec-CCCcccccc
Confidence 24577899999998877766665 567899999
Q ss_pred CCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeE
Q 046828 394 DRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTC 473 (627)
Q Consensus 394 spdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTv 473 (627)
|.-|.+ |.+- |..+.||.=.-.. ++.. ...|--++ ....|.++-|.|-...|.+|-..|-.
T Consensus 343 SqkglL-A~~~--G~~v~iw~d~~~~----s~~~----------~~pYm~H~--~~~~V~~l~FcP~EDvLGIGH~~G~t 403 (545)
T KOG1272|consen 343 SQKGLL-ALSY--GDHVQIWKDALKG----SGHG----------ETPYMNHR--CGGPVEDLRFCPYEDVLGIGHAGGIT 403 (545)
T ss_pred ccccce-eeec--CCeeeeehhhhcC----CCCC----------Ccchhhhc--cCcccccceeccHHHeeeccccCCce
Confidence 988854 3332 4568999532111 1100 11221111 22369999999999999999887765
Q ss_pred EEEEcCCCCCeeecc
Q 046828 474 HIFVLTPFGGETVLQ 488 (627)
Q Consensus 474 hIw~i~~~gg~~~~~ 488 (627)
-|. -|-.|.+++.
T Consensus 404 sil--VPGsGePN~D 416 (545)
T KOG1272|consen 404 SIL--VPGSGEPNYD 416 (545)
T ss_pred eEe--ccCCCCCCcc
Confidence 543 2444554443
No 257
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.52 E-value=0.13 Score=62.66 Aligned_cols=98 Identities=12% Similarity=0.177 Sum_probs=64.9
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC--CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH--GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d--Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
--.++|||-+ |....+-..-.+--.+|+|-|+|.+||+.... .+.|.+|.- + |- ...-+
T Consensus 236 ~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr--N------GL----------rhgeF 296 (928)
T PF04762_consen 236 RRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER--N------GL----------RHGEF 296 (928)
T ss_pred eeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec--C------Cc----------EeeeE
Confidence 3579999987 44333333222234578999999999998862 244566652 2 21 01234
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.++.......|..|+|++||..||+.-.|. |.+|-..-|
T Consensus 297 ~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 297 TLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred ecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 454323345699999999999999987555 999988765
No 258
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.49 E-value=0.0078 Score=66.70 Aligned_cols=98 Identities=17% Similarity=0.173 Sum_probs=55.9
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
+..|.++|+.+++ ...+..+........|+|||+.|+-.|..+..-+||-+... .|. ..++.
T Consensus 256 ~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~-----~g~----------~~rlt-- 317 (419)
T PRK04043 256 QPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN-----SGS----------VEQVV-- 317 (419)
T ss_pred CcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC-----CCC----------eEeCc--
Confidence 3567788887765 33444343323345799999988887764332455544211 221 01211
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCC-------CeEEEEEcCCCCCe
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSR-------GTCHIFVLTPFGGE 484 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~d-------gTvhIw~i~~~gg~ 484 (627)
..|. ...+|||||++|+..+.. +..+||-++..++.
T Consensus 318 ~~g~-----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 318 FHGK-----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred cCCC-----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 1132 124899999999988865 33566666554443
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.48 E-value=0.00034 Score=85.51 Aligned_cols=89 Identities=21% Similarity=0.331 Sum_probs=66.6
Q ss_pred CCCeEEEEECCCC--eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 363 IAGMVVVKDIVSR--SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 363 ~dG~V~IwD~~s~--~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
.++.|.+||.--. ..+.+ .+|.+.+++++|-|.-++|.+|+.+|. |.|||+. .
T Consensus 2313 d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~-v~l~D~r-q---------------------- 2367 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGE-VCLFDIR-Q---------------------- 2367 (2439)
T ss_pred CCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCc-EEEeehH-H----------------------
Confidence 5678999996432 22333 899999999999999999999999999 7999996 1
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
.+| | | .++. +. .-.++..++.+|+++||+++.++-.
T Consensus 2368 rql-~-h---~~~~--~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2368 RQL-R-H---TFQA--LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred HHH-H-H---Hhhh--hh-hhheeeccCcccceEEEEccccchh
Confidence 111 1 1 1222 22 4468999999999999999987543
No 260
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.47 E-value=0.003 Score=68.65 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=84.8
Q ss_pred CCCCC-eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 361 TDIAG-MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 361 ~~~dG-~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
+..|| .+-|+|..+++ +..+...-+.|.+|+.+|||+.++.|-..+. |-+.|+. +|. .+
T Consensus 377 gt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~e-l~vidid-------ngn-----------v~ 436 (668)
T COG4946 377 GTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFE-LWVIDID-------NGN-----------VR 436 (668)
T ss_pred eccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceE-EEEEEec-------CCC-----------ee
Confidence 45677 79999999876 4567777789999999999999999988876 6777886 443 23
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCC----eEEEEEcCCCCCeeecccccccccCCCCCCCc
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRG----TCHIFVLTPFGGETVLQIQNSHVDRPTLSPVL 503 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dg----TvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~~ 503 (627)
+.+..| .+-|.+++|+|+++|||-+=-+| .||||++.. +....+.+-+++.-.|.+.|-.
T Consensus 437 ~idkS~---~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy~vTT~ta~DfsPaFD~d~ 500 (668)
T COG4946 437 LIDKSE---YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIYDVTTPTAYDFSPAFDPDG 500 (668)
T ss_pred Eecccc---cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEEEecCCcccccCcccCCCC
Confidence 433222 23599999999999999876665 689999863 3333444444444444555543
No 261
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.43 E-value=0.06 Score=58.20 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=53.3
Q ss_pred CCCeEEEEECCCCeEEEEeccCC-CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHT-SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~-~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
.+|.|..+|..+++.+..+.... ........ .|.+|.+++.+|. +++||.. +|+ .++
T Consensus 287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~-l~~~d~~-------tG~------------~~~ 344 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY-LHWLSRE-------DGS------------FVA 344 (377)
T ss_pred CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE-EEEEECC-------CCC------------EEE
Confidence 56778888888887665553211 11122122 3678889999997 7899975 342 555
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
++.-+.. ....+.++. |+ .|.+++.||+++.|.
T Consensus 345 ~~~~~~~-~~~~sp~~~-~~-~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 345 RLKTDGS-GIASPPVVV-GD-GLLVQTRDGDLYAFR 377 (377)
T ss_pred EEEcCCC-ccccCCEEE-CC-EEEEEeCCceEEEeC
Confidence 5532221 111222333 33 488999999998873
No 262
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.43 E-value=0.00083 Score=79.75 Aligned_cols=96 Identities=11% Similarity=0.290 Sum_probs=71.6
Q ss_pred EECCCCeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCC
Q 046828 370 KDIVSRSVISQFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMT 448 (627)
Q Consensus 370 wD~~s~~~l~~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t 448 (627)
|..+ |..++++..|...|..++.++.- .+++|||+||+ |+||++.... + .+. .......|.. .
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGt-VKvW~~~k~~-~--~~~-------s~rS~ltys~----~ 1097 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGT-VKVWNLRKLE-G--EGG-------SARSELTYSP----E 1097 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCce-EEEeeehhhh-c--Ccc-------eeeeeEEEec----c
Confidence 4433 56789999999998888887765 99999999998 7999986321 1 111 0011123332 2
Q ss_pred cCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 449 SAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 449 ~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
..++..+.+-+.+..+|+++.||.|++++++.+
T Consensus 1098 ~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred CCceEEEEeccCCCeEEEEcCCCeEEEEEcccc
Confidence 346899999999999999999999999999986
No 263
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.43 E-value=0.0031 Score=68.72 Aligned_cols=86 Identities=20% Similarity=0.310 Sum_probs=53.9
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce-eEEEEEeecCCcCc-EEEEEE-ccCCC
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH-VHLYKLHRGMTSAV-IQDICF-SHYSQ 462 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~-~~l~~l~rG~t~a~-I~sIaF-SpDg~ 462 (627)
--|++++|+.+|.-|..+-.|-. |.+|. +... .|. +.+..+.. ..+.+...||.+.. |..+-| -|.+.
T Consensus 337 v~ITgl~Ysh~~sElLaSYnDe~-IYLF~--~~~~---~G~---~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE 407 (559)
T KOG1334|consen 337 VNITGLVYSHDGSELLASYNDED-IYLFN--KSMG---DGS---EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE 407 (559)
T ss_pred ccceeEEecCCccceeeeecccc-eEEec--cccc---cCC---CCCCCcchhhccchhhcccccccccceeeeccCccc
Confidence 35999999987766555555543 78884 2321 121 11111100 11222245666654 888865 78999
Q ss_pred EEEEEeCCCeEEEEEcCC
Q 046828 463 WIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 463 ~Las~S~dgTvhIw~i~~ 480 (627)
|+++||+=|-|.||+-+.
T Consensus 408 yVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 408 YVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred eEEecCccceEEEEecch
Confidence 999999999999999654
No 264
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.38 E-value=0.004 Score=64.91 Aligned_cols=85 Identities=14% Similarity=0.175 Sum_probs=62.9
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEE
Q 046828 377 VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDIC 456 (627)
Q Consensus 377 ~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIa 456 (627)
+.-.|..|.....++.|+|.+.++|++|.- ++|-||=.+.+ .+|=-+ .|+.+-. ...|.+++
T Consensus 92 ptlvLlRiNrAAt~V~WsP~enkFAVgSga-r~isVcy~E~E------------NdWWVs-KhikkPi----rStv~sld 153 (361)
T KOG1523|consen 92 PTLVLLRINRAATCVKWSPKENKFAVGSGA-RLISVCYYEQE------------NDWWVS-KHIKKPI----RSTVTSLD 153 (361)
T ss_pred cceeEEEeccceeeEeecCcCceEEeccCc-cEEEEEEEecc------------cceehh-hhhCCcc----ccceeeee
Confidence 445566678889999999999999999975 56888876511 233111 1232222 24599999
Q ss_pred EccCCCEEEEEeCCCeEEEEEcC
Q 046828 457 FSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 457 FSpDg~~Las~S~dgTvhIw~i~ 479 (627)
|.|+.=.||+||.|+.++||..-
T Consensus 154 WhpnnVLlaaGs~D~k~rVfSay 176 (361)
T KOG1523|consen 154 WHPNNVLLAAGSTDGKCRVFSAY 176 (361)
T ss_pred ccCCcceecccccCcceeEEEEe
Confidence 99999999999999999999864
No 265
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.35 E-value=0.014 Score=61.50 Aligned_cols=78 Identities=18% Similarity=0.328 Sum_probs=54.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecC--------CcCcE---E
Q 046828 385 TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGM--------TSAVI---Q 453 (627)
Q Consensus 385 ~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~--------t~a~I---~ 453 (627)
.+.|+.+.|+++|++++|-+-- + ++|||+.-.. .+ ...|.++.-. .+.-| .
T Consensus 272 IsSISDvKFs~sGryilsRDyl-t-vk~wD~nme~------~p----------v~t~~vh~~lr~kLc~lYEnD~IfdKF 333 (433)
T KOG1354|consen 272 ISSISDVKFSHSGRYILSRDYL-T-VKLWDLNMEA------KP----------VETYPVHEYLRSKLCSLYENDAIFDKF 333 (433)
T ss_pred hhhhhceEEccCCcEEEEeccc-e-eEEEeccccC------Cc----------ceEEeehHhHHHHHHHHhhccchhhee
Confidence 4579999999999999997765 4 8999994121 10 1223222100 01112 4
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 454 DICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 454 sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.++||-|+.++++||-..-+|+|++..
T Consensus 334 ec~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 334 ECSWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred EEEEcCCcceEecccccceEEEecCCC
Confidence 589999999999999999999999654
No 266
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.34 E-value=0.01 Score=66.12 Aligned_cols=53 Identities=23% Similarity=0.470 Sum_probs=47.2
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCC-----CCEEEEEeCCCCEEEEEeCC
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRS-----GTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspd-----G~lLaTaS~dGt~I~Vwdi~ 416 (627)
.+.|.+||+++++.+.+|.+|.+||++++|--+ |.++.+...-.+.|.+|-+.
T Consensus 163 s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 163 SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 468999999999999999999999999999888 88888877767778999875
No 267
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.29 E-value=0.23 Score=49.46 Aligned_cols=93 Identities=16% Similarity=0.158 Sum_probs=61.2
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCC----------eEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcccc
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSP----------ISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTY 431 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~----------Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~ 431 (627)
..+|.|..+|+.+++.+.....+..+ +..-.+..+| .+..++.+|.++.+ |+. +|
T Consensus 129 ~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~-------tg------ 193 (238)
T PF13360_consen 129 TSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLA-------TG------ 193 (238)
T ss_dssp ETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETT-------TT------
T ss_pred eccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECC-------CC------
Confidence 34899999999999998888765433 1222233355 66667777776666 875 34
Q ss_pred CCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 432 DWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 432 ~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
..+++.. .. .+.. ....++..|++.+.+++++.|++..
T Consensus 194 ------~~~w~~~--~~--~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 194 ------EKLWSKP--IS--GIYS-LPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp ------EEEEEEC--SS---ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred ------CEEEEec--CC--CccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence 2345332 11 1222 2567888999998999999999875
No 268
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.28 E-value=0.045 Score=59.16 Aligned_cols=59 Identities=10% Similarity=-0.137 Sum_probs=43.7
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeC-----------CeEEEEeCCCCceeEEEEcCCC
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLA-----------AQIYCFDALTLESKFSVLTYPV 239 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~-----------~~I~i~D~~t~e~~~tl~~~p~ 239 (627)
++|.+.|..+++.+.++.-...-..+ +++ +.|.++.. +.|.+||+.|++.+..|.--+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG 98 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence 78999999999999999843322234 776 55655544 6899999999999888854333
No 269
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.26 E-value=0.00086 Score=44.86 Aligned_cols=38 Identities=26% Similarity=0.642 Sum_probs=34.3
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEe
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFR 414 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwd 414 (627)
+.+..+.+|...|.+++|++++.++++++.+|+ +++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence 456778899999999999999999999999998 79996
No 270
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.14 Score=57.23 Aligned_cols=89 Identities=13% Similarity=0.287 Sum_probs=64.4
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC---CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI---HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~---dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
+-.|.|+|++- .++..|. .+|=+++-|||.|.+|+.|+- .|. |-|||+. .. .++
T Consensus 293 PAkvtifnlr~-~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~-n~------------------K~i 349 (566)
T KOG2315|consen 293 PAKVTIFNLRG-KPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVP-NR------------------KLI 349 (566)
T ss_pred cceEEEEcCCC-CEeEeCC--CCCccceEECCCCCEEEEeecCCCCCc-eEEEecc-ch------------------hhc
Confidence 45688888864 4555554 567789999999999999876 466 7999985 21 133
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeC------CCeEEEEEcC
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSS------RGTCHIFVLT 479 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~------dgTvhIw~i~ 479 (627)
.++. .+.-.-+.|+|||+|+++++. |+.++||+..
T Consensus 350 ~~~~----a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 350 AKFK----AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred cccc----cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 3332 122345789999999998876 7889999864
No 271
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.22 E-value=0.0025 Score=66.62 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=67.0
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
..+++|.+|++...+-.+.|..-..++++++|||||+.|.+-|+=---|.||.+... ..+
T Consensus 68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~--------------------~~~ 127 (447)
T KOG4497|consen 68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ--------------------KGY 127 (447)
T ss_pred eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc--------------------eeE
Confidence 468899999999998889999889999999999999766555543334899998621 122
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRG 471 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dg 471 (627)
-+. +..+.+..++|.|||++.|+.+.+.
T Consensus 128 ~~~--~pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 128 LLP--HPKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred Eec--ccccCceeEEECCCCceeeeeeccc
Confidence 222 2233479999999999999988753
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.10 E-value=0.054 Score=66.77 Aligned_cols=73 Identities=10% Similarity=0.105 Sum_probs=52.0
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe-ecC--------Cc---CcEEEEE
Q 046828 389 SALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH-RGM--------TS---AVIQDIC 456 (627)
Q Consensus 389 s~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~-rG~--------t~---a~I~sIa 456 (627)
..|+|+++|.++++-+.+++ |++||.. ++ .+..+. .|. .. .....|+
T Consensus 807 ~Gvavd~dG~LYVADs~N~r-IrviD~~-------tg-------------~v~tiaG~G~~G~~dG~~~~a~l~~P~GIa 865 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHK-IKKLDPA-------TK-------------RVTTLAGTGKAGFKDGKALKAQLSEPAGLA 865 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCE-EEEEECC-------CC-------------eEEEEeccCCcCCCCCcccccccCCceEEE
Confidence 57899999998777777765 8999974 11 111110 010 00 1368899
Q ss_pred EccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 457 FSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 457 FSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
+++||+.+++-+.+++|++|+++...
T Consensus 866 vd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 866 LGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EeCCCCEEEEECCCCEEEEEECCCCc
Confidence 99999999999999999999997643
No 273
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.09 E-value=0.26 Score=53.31 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=55.9
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.+|.+..+|.++++.+-.... .. ..... .++..|..++.+|. +..+|.. +|. .+++
T Consensus 249 ~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~~~G~-l~~~d~~-------tG~------------~~W~ 304 (377)
T TIGR03300 249 YQGRVAALDLRSGRVLWKRDA-SS-YQGPA--VDDNRLYVTDADGV-VVALDRR-------SGS------------ELWK 304 (377)
T ss_pred cCCEEEEEECCCCcEEEeecc-CC-ccCce--EeCCEEEEECCCCe-EEEEECC-------CCc------------EEEc
Confidence 567899999999887766552 11 11222 24667777888887 7889975 342 4444
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
... .....+.+... .+..|.+++.+|.+++|+...
T Consensus 305 ~~~-~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 305 NDE-LKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred ccc-ccCCccccCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 321 11111111122 467899999999999998654
No 274
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.08 E-value=0.12 Score=59.57 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=88.7
Q ss_pred eeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcC--CCCCEEEEEEccCc
Q 046828 70 FDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFR--NSHPLLLVVACDEA 147 (627)
Q Consensus 70 Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~--~~rpLlavv~~d~~ 147 (627)
|...|+++ .-++.-|..+-+-|-|.-..+- .+.+..|...|..+++.|.|... |-++ ...++||+ .|-
T Consensus 18 ~~A~Dw~~---~GLiAygshslV~VVDs~s~q~-iqsie~h~s~V~~VrWap~~~p~---~llS~~~~~lliAs--aD~- 87 (1062)
T KOG1912|consen 18 RNAADWSP---SGLIAYGSHSLVSVVDSRSLQL-IQSIELHQSAVTSVRWAPAPSPR---DLLSPSSSQLLIAS--ADI- 87 (1062)
T ss_pred ccccccCc---cceEEEecCceEEEEehhhhhh-hhccccCccceeEEEeccCCCch---hccCccccceeEEe--ccc-
Confidence 33345554 4588888888899999887663 45666788889999999888543 3344 24566654 232
Q ss_pred cCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC-eEEEEEe------cCcEEE-EEeCCe
Q 046828 148 KNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS-TVYMVRC------SPRIVA-VGLAAQ 219 (627)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~------s~~~La-V~~~~~ 219 (627)
.+.|.+||...+..+..|+.+. +|.++.+ ++++|+ .-....
T Consensus 88 -------------------------------~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~ 136 (1062)
T KOG1912|consen 88 -------------------------------SGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSST 136 (1062)
T ss_pred -------------------------------cCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcE
Confidence 1569999999999999998664 7877776 344444 445668
Q ss_pred EEEEeCCCCceeEEEE
Q 046828 220 IYCFDALTLESKFSVL 235 (627)
Q Consensus 220 I~i~D~~t~e~~~tl~ 235 (627)
|.+|++.||++.+...
T Consensus 137 lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 137 LVLWNTDTGEKFWKYD 152 (1062)
T ss_pred EEEEEccCCceeeccc
Confidence 9999999999876653
No 275
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.07 E-value=0.0041 Score=69.49 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=67.5
Q ss_pred EEEECCCCe--EEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q 046828 368 VVKDIVSRS--VISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH 444 (627)
Q Consensus 368 ~IwD~~s~~--~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~ 444 (627)
.+|+....+ .+.... ++.+.|.+.+++|+.+.|+.|.+||. |++||.. ++. .+..+.
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~-------~~~-----------t~~~ka- 298 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS-IILYDTT-------RGV-----------TLLAKA- 298 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe-EEEEEcC-------CCe-----------eeeeee-
Confidence 457765443 333333 67889999999999999999999998 7999975 121 011111
Q ss_pred ecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 445 RGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 445 rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.-....++|.|||-.+++++++|-+.+||+.-.
T Consensus 299 ----~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 299 ----EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ----cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 123788999999999999999999999998643
No 276
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.92 E-value=0.085 Score=55.96 Aligned_cols=95 Identities=12% Similarity=0.140 Sum_probs=57.9
Q ss_pred CeEEEEECCCCe-E--EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 365 GMVVVKDIVSRS-V--ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 365 G~V~IwD~~s~~-~--l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
..|.+|++...+ . .+.+..+ ..|.+|.- -+.+|+.++...- +.++..... + ..+.
T Consensus 107 ~~l~v~~l~~~~~l~~~~~~~~~-~~i~sl~~--~~~~I~vgD~~~s-v~~~~~~~~------~------------~~l~ 164 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAFYDSP-FYITSLSV--FKNYILVGDAMKS-VSLLRYDEE------N------------NKLI 164 (321)
T ss_dssp TEEEEEEEETTSSEEEEEEE-BS-SSEEEEEE--ETTEEEEEESSSS-EEEEEEETT------T------------E-EE
T ss_pred CEEEEEEccCcccchhhheecce-EEEEEEec--cccEEEEEEcccC-EEEEEEEcc------C------------CEEE
Confidence 456777766655 2 2222222 24444443 3668888887654 566654321 1 2355
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+-|-...-.+.++.|-.|++.++++..+|.+++|..++.
T Consensus 165 ~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 165 LVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp EEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred EEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 5555444445999999877789999999999999999754
No 277
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.88 E-value=0.35 Score=51.11 Aligned_cols=98 Identities=23% Similarity=0.336 Sum_probs=63.4
Q ss_pred CCeEEEEECCCCeEEEE--e--ccCCCCeEEEEECCCCCEEEEEeCCCCE------EEEEeCCCCCCCCCCCCCccccCC
Q 046828 364 AGMVVVKDIVSRSVISQ--F--RAHTSPISALCFDRSGTLLVTASIHGNN------INIFRIMPSSSKGRSGSASQTYDW 433 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~--~--~aH~~~Is~laFspdG~lLaTaS~dGt~------I~Vwdi~p~~~~~~~g~~~~~~~~ 433 (627)
+-.+...|..+++.+.+ + .-|.-.|.-|+++++|+.+.-.-.+|.. +-+++- |..
T Consensus 137 ~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~---------g~~------ 201 (305)
T PF07433_consen 137 QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR---------GGA------ 201 (305)
T ss_pred CCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC---------CCc------
Confidence 34566678888887776 5 2377889999999999988777666641 111111 110
Q ss_pred CCceeEEEEE----eecCCcCcEEEEEEccCCCEEEEEeCCC-eEEEEEcCCC
Q 046828 434 TSSHVHLYKL----HRGMTSAVIQDICFSHYSQWIAIVSSRG-TCHIFVLTPF 481 (627)
Q Consensus 434 ~~~~~~l~~l----~rG~t~a~I~sIaFSpDg~~Las~S~dg-TvhIw~i~~~ 481 (627)
..+... .+++. .-|-+|+|+.|+.++|++|-+| .+.+|+..+-
T Consensus 202 ----~~~~~~p~~~~~~l~-~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 202 ----LRLLPAPEEQWRRLN-GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred ----ceeccCChHHHHhhC-CceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 011111 01111 1389999999999998888776 6899987653
No 278
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.85 E-value=1.3 Score=54.08 Aligned_cols=75 Identities=12% Similarity=0.175 Sum_probs=51.6
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEcc-CCC
Q 046828 384 HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSH-YSQ 462 (627)
Q Consensus 384 H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSp-Dg~ 462 (627)
....|..|+||+|+++||.--.+. |.+|-+. + .+|-+.+..+-.....+..+.|+| +..
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~--vqLWt~~-N-----------------YHWYLKqei~~~~~~~~~~~~Wdpe~p~ 362 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR--VQLWTRS-N-----------------YHWYLKQEIRFSSSESVNFVKWDPEKPL 362 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC--ceEEEee-C-----------------CEEEEEEEEEccCCCCCCceEECCCCCC
Confidence 456789999999999999987664 8999764 1 123333333322222355699999 667
Q ss_pred EEEEEeCCCeEEEEEc
Q 046828 463 WIAIVSSRGTCHIFVL 478 (627)
Q Consensus 463 ~Las~S~dgTvhIw~i 478 (627)
.|.+.+..|.+.+++.
T Consensus 363 ~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 363 RLHVLTSNGQYEIYDF 378 (928)
T ss_pred EEEEEecCCcEEEEEE
Confidence 7888888888876554
No 279
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=96.81 E-value=0.02 Score=61.12 Aligned_cols=102 Identities=13% Similarity=0.037 Sum_probs=79.7
Q ss_pred CCCCCCeEEEEECCC------CeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccC
Q 046828 360 DTDIAGMVVVKDIVS------RSVISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYD 432 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s------~~~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~ 432 (627)
+++.|-.++||.+.. .+++.... .|.+.|.||+|+-..++|.++..+|++ ..-|++. .
T Consensus 73 SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V-I~HDiEt-------~------- 137 (609)
T KOG4227|consen 73 SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV-IKHDIET-------K------- 137 (609)
T ss_pred ecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee-Eeeeccc-------c-------
Confidence 567888999999753 35555444 456899999999999999999999995 5678862 1
Q ss_pred CCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 433 WTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 433 ~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
..++-+........|+.+.-+|-...|++++.++.|-+|++...
T Consensus 138 -----qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 138 -----QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR 181 (609)
T ss_pred -----eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCC
Confidence 24555543333445999999999999999999999999999754
No 280
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.70 E-value=0.035 Score=64.85 Aligned_cols=102 Identities=10% Similarity=0.133 Sum_probs=69.4
Q ss_pred CCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
...++.+|..+-+-.+|+....+ ..+..-..+.|.+++-.- | + ..+ +|.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e-~r~~~v~a~~v~imR~Nn--------------r-~-lf~-G~t------------- 195 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKE-TRTTNVSASGVTIMRYNN--------------R-N-LFC-GDT------------- 195 (1118)
T ss_pred Ccceeecchhhheeeeeccccee-eeeeeccCCceEEEEecC--------------c-E-EEe-ecc-------------
Confidence 46677777888899999887553 233333344465555321 1 2 222 222
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecCcEEEEEe-CC---------eEEEEeCCCC
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSPRIVAVGL-AA---------QIYCFDALTL 228 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~~~LaV~~-~~---------~I~i~D~~t~ 228 (627)
.++|.+-|+++-+.+|++. |...|.++.+....|+++. .. =|++||++++
T Consensus 196 -------------------~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm 256 (1118)
T KOG1275|consen 196 -------------------RGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM 256 (1118)
T ss_pred -------------------cceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhh
Confidence 2679999999999999999 5559999999998777653 22 1789999988
Q ss_pred cee
Q 046828 229 ESK 231 (627)
Q Consensus 229 e~~ 231 (627)
+.+
T Consensus 257 ral 259 (1118)
T KOG1275|consen 257 RAL 259 (1118)
T ss_pred hcc
Confidence 754
No 281
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.58 E-value=0.94 Score=48.33 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=28.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCC
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPS 418 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~ 418 (627)
..-....|+|+|++|+.+.+++..|.||.+.+.
T Consensus 291 ~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 291 QFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred cCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 334678899999999999999999999999754
No 282
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.42 E-value=0.052 Score=62.45 Aligned_cols=103 Identities=21% Similarity=0.287 Sum_probs=75.0
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC------CCE---EEEEeCCCCCCCCCCCCCccc
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH------GNN---INIFRIMPSSSKGRSGSASQT 430 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d------Gt~---I~Vwdi~p~~~~~~~g~~~~~ 430 (627)
-|.+.|+|.|+|+.++..-+.|..|++.|.+|.|--...++ +.+.. |-+ +.|=|+. +|-
T Consensus 442 vGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslv-Sfsys~~n~~sg~vrN~l~vtdLr-------tGl---- 509 (1062)
T KOG1912|consen 442 VGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLV-SFSYSHVNSASGGVRNDLVVTDLR-------TGL---- 509 (1062)
T ss_pred eecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEE-EeeeccccccccceeeeEEEEEcc-------ccc----
Confidence 45688999999999999999999999999999997665544 44321 111 2344553 331
Q ss_pred cCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 431 YDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 431 ~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+-++-.++.+.+.|..|.-|.-++|||+.=.|.-+.||++...
T Consensus 510 -------sk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 510 -------SKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred -------ccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence 12222225666667999999999999999999999999998653
No 283
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.38 E-value=1.7 Score=46.00 Aligned_cols=50 Identities=10% Similarity=0.250 Sum_probs=42.0
Q ss_pred cEEEEEECCCC-------ceEEEEecCCeEEEEEecCcEEEEEeCCeEEEEeCCCCc
Q 046828 180 TAVRFYSLRSH-------NYVHVLRFRSTVYMVRCSPRIVAVGLAAQIYCFDALTLE 229 (627)
Q Consensus 180 ~tV~lwdl~t~-------~~V~tL~f~s~V~sV~~s~~~LaV~~~~~I~i~D~~t~e 229 (627)
+.|.+|++... +.+++.+++.+|++|..-...|+++...+|++|++...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcc
Confidence 88999999985 456677789999999887777999999999999998777
No 284
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=95.96 E-value=0.049 Score=56.46 Aligned_cols=100 Identities=14% Similarity=0.122 Sum_probs=72.8
Q ss_pred CCCCeEEEEECCCC--eEEEEeccCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 362 DIAGMVVVKDIVSR--SVISQFRAHTSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 362 ~~dG~V~IwD~~s~--~~l~~~~aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
...|.+.+.+.... +.+...++|.-++....|+-. -.++.||++||. +.-||+. .+ + .
T Consensus 140 ~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R-~p-----~------------~ 200 (339)
T KOG0280|consen 140 DSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIR-IP-----K------------T 200 (339)
T ss_pred cCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEec-CC-----c------------c
Confidence 34566665554444 334588999999999999864 468999999998 7999996 21 1 1
Q ss_pred EEEEEeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~ 481 (627)
.++.-.+-|+ +.|.+|.-|| +..+|++|+.|.+||+||...-
T Consensus 201 ~i~~n~kvH~-~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 201 FIWHNSKVHT-SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred eeeecceeee-cceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence 4554333344 3488887776 7899999999999999998743
No 285
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=95.86 E-value=1.2 Score=49.63 Aligned_cols=109 Identities=18% Similarity=0.197 Sum_probs=65.7
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
...|..-...|+++|+-+..+ .++-.+.--|+.+.+.|+ +.+| ++|...+.--
T Consensus 44 G~~l~~~~~~~V~~~~g~~~~---~l~~~~~~~V~~~~fSP~-------------~kYL--~tw~~~pi~~--------- 96 (561)
T COG5354 44 GTYLFSEHAAGVECWGGPSKA---KLVRFRHPDVKYLDFSPN-------------EKYL--VTWSREPIIE--------- 96 (561)
T ss_pred chheehhhccceEEccccchh---heeeeecCCceecccCcc-------------ccee--eeeccCCccC---------
Confidence 456677778899999988755 333334455666666654 3454 5665432100
Q ss_pred ccccCCCCCCCCCC-CCcCCcEEEEEECCCCceEEEEecCC-e--EE-EEEec--CcEEEEEeCCeEEEEeC
Q 046828 161 GLVRDGYDEPQPGN-VAMSPTAVRFYSLRSHNYVHVLRFRS-T--VY-MVRCS--PRIVAVGLAAQIYCFDA 225 (627)
Q Consensus 161 ~~~~~g~~~~~~~~-~~~~~~tV~lwdl~t~~~V~tL~f~s-~--V~-sV~~s--~~~LaV~~~~~I~i~D~ 225 (627)
|..+. +.-..+.+.+||..+|..|.++.... + .+ -++++ ..++|=.....++|+++
T Consensus 97 ---------pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~ 159 (561)
T COG5354 97 ---------PEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI 159 (561)
T ss_pred ---------hhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec
Confidence 00001 11123569999999999999987654 3 33 34444 45555445668999997
No 286
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=95.81 E-value=0.66 Score=47.89 Aligned_cols=101 Identities=13% Similarity=0.041 Sum_probs=66.3
Q ss_pred CCCeEEEEEC--CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 363 IAGMVVVKDI--VSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 363 ~dG~V~IwD~--~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
.|.++++.++ ...+...+++. -.+..++.++|++++++..+... |-.|.|..+ + ..+
T Consensus 136 ndht~k~~~~~~~s~~~~~h~~~--~~~ns~~~snd~~~~~~Vgds~~-Vf~y~id~~------s------------ey~ 194 (344)
T KOG4532|consen 136 NDHTGKTMVVSGDSNKFAVHNQN--LTQNSLHYSNDPSWGSSVGDSRR-VFRYAIDDE------S------------EYI 194 (344)
T ss_pred CCcceeEEEEecCcccceeeccc--cceeeeEEcCCCceEEEecCCCc-ceEEEeCCc------c------------cee
Confidence 4444444444 44343333332 12788999999999999988766 567777521 1 122
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
.+.+...|...=.+.+||.....+|+++.||++-|||+..-+-+
T Consensus 195 ~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 195 ENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence 22222223333578899999999999999999999999865544
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.032 Score=61.75 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=58.5
Q ss_pred CCCeEEEEECCCCeEEEEecc-----CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 363 IAGMVVVKDIVSRSVISQFRA-----HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~a-----H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
...+|+++|....+-++.++- ....+.+++..|.|..||.|=..|. |-+.|.. +|
T Consensus 849 aeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGc-i~~LDaR-------~G------------ 908 (1034)
T KOG4190|consen 849 AESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGC-IAILDAR-------NG------------ 908 (1034)
T ss_pred chhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCc-EEEEecC-------CC------------
Confidence 345677777777765555542 2345899999999999999999998 6777875 33
Q ss_pred eEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEE-EEc
Q 046828 438 VHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHI-FVL 478 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhI-w~i 478 (627)
++..-.|-+. +....++ .|..+.|+.+..|.++-| |.-
T Consensus 909 -~vINswrpme-cdllqla-apsdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 909 -KVINSWRPME-CDLLQLA-APSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred -ceeccCCccc-chhhhhc-CchhHHHHhhcccceeEeeehh
Confidence 1111112111 1112222 355678888888888877 753
No 288
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.60 E-value=0.16 Score=56.65 Aligned_cols=84 Identities=17% Similarity=0.231 Sum_probs=60.7
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCC---eEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSP---ISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~---Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
+...+.|||+.+|.....|..-.++ -.-..||.|++++|--..++ |.||+.. .- .
T Consensus 280 e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s--isIyEtp-sf-------------------~ 337 (698)
T KOG2314|consen 280 EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS--ISIYETP-SF-------------------M 337 (698)
T ss_pred CCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccce--EEEEecC-ce-------------------e
Confidence 4457999999999888888763332 35578999999999877664 8999873 21 3
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSS 469 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~ 469 (627)
+++. +-..-..|.+..|||.+..||.-+-
T Consensus 338 lld~-Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 338 LLDK-KSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred eecc-cccCCccccCcccCCCcceEEEEcc
Confidence 3433 2223344899999999999997554
No 289
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=95.52 E-value=0.076 Score=56.20 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=47.0
Q ss_pred cEEEEEECCCC-----ceEEEEecCCeEEEEEe---cC-cEEEEEeCCeEEEEeCCCCce---eEEEEcCCC
Q 046828 180 TAVRFYSLRSH-----NYVHVLRFRSTVYMVRC---SP-RIVAVGLAAQIYCFDALTLES---KFSVLTYPV 239 (627)
Q Consensus 180 ~tV~lwdl~t~-----~~V~tL~f~s~V~sV~~---s~-~~LaV~~~~~I~i~D~~t~e~---~~tl~~~p~ 239 (627)
+.|..+|||.+ .+.+.|.+++.|.++.. +. .++|+.++++|.+||.+-.++ +.+.++|-|
T Consensus 274 geI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN 345 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN 345 (425)
T ss_pred CcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccc
Confidence 56899999865 67888999999888765 44 566777899999999998777 566666644
No 290
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=95.42 E-value=0.32 Score=50.92 Aligned_cols=84 Identities=17% Similarity=0.252 Sum_probs=55.3
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE----ee----cCCcCcE
Q 046828 381 FRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL----HR----GMTSAVI 452 (627)
Q Consensus 381 ~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l----~r----G~t~a~I 452 (627)
|..-.+.|+.+.|+++|+++++-+-- + ++|||+.-.. .+ .....+ +. -..+..|
T Consensus 276 f~eivsSISD~kFs~ngryIlsRdyl-t-vkiwDvnm~k------~p----------ikTi~~h~~l~~~l~d~YEnDai 337 (460)
T COG5170 276 FEEIVSSISDFKFSDNGRYILSRDYL-T-VKIWDVNMAK------NP----------IKTIPMHCDLMDELNDVYENDAI 337 (460)
T ss_pred HHHHhhhhcceEEcCCCcEEEEeccc-e-EEEEeccccc------CC----------ceeechHHHHHHHHHhhhhccce
Confidence 44445789999999999999887765 4 8999985211 00 011100 00 0001113
Q ss_pred ---EEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 453 ---QDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 453 ---~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
..|.||-|.+.+.+||.....-||.....|
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg 370 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSG 370 (460)
T ss_pred eeeEEEEecCCcccccccccccceeeeccccCC
Confidence 458999999999999999999999865543
No 291
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.32 E-value=0.016 Score=63.95 Aligned_cols=85 Identities=20% Similarity=0.322 Sum_probs=63.9
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEE
Q 046828 377 VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDIC 456 (627)
Q Consensus 377 ~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIa 456 (627)
.++.|.+|+..|.+++--.+..-+++||.|.| +++|.++|+... .|+. .+.+.. ..|+. .|.+|.
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKT-VKLWSik~EgD~--~~ts----------aCQfTY-~aHkk-~i~~ig 791 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKT-VKLWSIKPEGDE--IGTS----------ACQFTY-QAHKK-PIHDIG 791 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCce-EEEEEeccccCc--cccc----------eeeeEh-hhccC-ccccee
Confidence 47789999999998876667778899999988 799999877532 2221 234443 22332 499999
Q ss_pred EccCCCEEEEEeCCCeEEEEEc
Q 046828 457 FSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 457 FSpDg~~Las~S~dgTvhIw~i 478 (627)
|=.|-++++++ ||-+|+||-
T Consensus 792 fL~~lr~i~Sc--D~giHlWDP 811 (1034)
T KOG4190|consen 792 FLADLRSIASC--DGGIHLWDP 811 (1034)
T ss_pred eeeccceeeec--cCcceeecc
Confidence 99999998765 999999983
No 292
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=95.22 E-value=0.044 Score=55.98 Aligned_cols=113 Identities=16% Similarity=0.074 Sum_probs=70.7
Q ss_pred CCCCCCeEEEEECCCCe-EEEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCC-CC--CCCCCc-cccCC
Q 046828 360 DTDIAGMVVVKDIVSRS-VISQFRAHTSPISALCFDR-SGTLLVTASIHGNNINIFRIMPSSS-KG--RSGSAS-QTYDW 433 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~-~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~-~~--~~g~~~-~~~~~ 433 (627)
.+.++|.|.|||..+.. ++..+++|..+|.-+-|.| ++..|.|+|+||.+ --||.....- .+ .++... -++|+
T Consensus 197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGsl-w~wdas~~~l~i~~~~s~~s~WLsgD~ 275 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSL-WHWDASTTFLSISNQASVISSWLSGDP 275 (319)
T ss_pred EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcE-EEEcCCCceEEecCccccccccccCCc
Confidence 45789999999998874 4556789999999999999 68999999999984 5577531100 00 000000 01121
Q ss_pred CCceeEEEEEeecCCcCcEEEE-EEccCCCEEEEEeCCCeEEEEE
Q 046828 434 TSSHVHLYKLHRGMTSAVIQDI-CFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 434 ~~~~~~l~~l~rG~t~a~I~sI-aFSpDg~~Las~S~dgTvhIw~ 477 (627)
... +.++ .+.-+.+..+| .|.--|..|+++++-+-|.+++
T Consensus 276 v~s---~i~i-~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 276 VKS---RIEI-TSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ccc---eEee-eccccccceeeeeeeccCceEEeccccceEEEec
Confidence 111 1222 12223333444 4556677899999988888765
No 293
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.19 E-value=6 Score=43.16 Aligned_cols=55 Identities=9% Similarity=0.068 Sum_probs=34.4
Q ss_pred cEEEEEECCCCceEEEEecCCe--------EEEEEe-----cCcEEEEEeCCeEEEEeCCCCceeEEE
Q 046828 180 TAVRFYSLRSHNYVHVLRFRST--------VYMVRC-----SPRIVAVGLAAQIYCFDALTLESKFSV 234 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~--------V~sV~~-----s~~~LaV~~~~~I~i~D~~t~e~~~tl 234 (627)
+.|.-+|.++|+.+.+.++..+ ...+.. ...+++++.++.++++|+.+++.+.+.
T Consensus 215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 5677788888887766543211 111111 234455566778999999999876553
No 294
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.97 E-value=0.11 Score=57.98 Aligned_cols=96 Identities=19% Similarity=0.217 Sum_probs=63.9
Q ss_pred EEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC----------CCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI----------HGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 367 V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~----------dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
|.+|--.+-..++.|. |+ .|..+.|||.-++|+|=|. +|+.++||||. +|.-
T Consensus 233 I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~-------tG~l--------- 294 (698)
T KOG2314|consen 233 IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA-------TGLL--------- 294 (698)
T ss_pred eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc-------ccch---------
Confidence 6677555544444443 54 4899999999999999764 56779999997 4421
Q ss_pred eeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 437 HVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
.+-+...++.. ....=..||.|++|+|--.. .+|+||+...+..
T Consensus 295 -krsF~~~~~~~-~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~l 338 (698)
T KOG2314|consen 295 -KRSFPVIKSPY-LKWPIFRWSHDDKYFARMTG-NSISIYETPSFML 338 (698)
T ss_pred -hcceeccCCCc-cccceEEeccCCceeEEecc-ceEEEEecCceee
Confidence 01111112211 22334589999999998877 6899999877643
No 295
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=94.88 E-value=0.092 Score=34.46 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=25.9
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 450 AVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 450 a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
..|.++.|.++++++++++.|+++.+|+
T Consensus 13 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3599999999999999999999999995
No 296
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.86 E-value=1.8 Score=48.21 Aligned_cols=60 Identities=20% Similarity=0.184 Sum_probs=38.3
Q ss_pred EEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC
Q 046828 391 LCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR 470 (627)
Q Consensus 391 laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d 470 (627)
=.|+|||+.|+-+|+.+-.-+||-..+.+. . ...+.+.-|.. ..-.|||||++|+..+..
T Consensus 287 Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~-----~-----------~~riT~~~~~~----~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 287 PSWSPDGSKIVFTSDRGGRPQIYLYDLEGS-----Q-----------VTRLTFSGGGN----SNPVWSPDGDKIVFESSS 346 (425)
T ss_pred ccCCCCCCEEEEEeCCCCCcceEEECCCCC-----c-----------eeEeeccCCCC----cCccCCCCCCEEEEEecc
Confidence 369999999998887654457776643321 0 12233322211 156799999999998854
No 297
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=94.80 E-value=0.057 Score=59.28 Aligned_cols=113 Identities=17% Similarity=0.233 Sum_probs=80.9
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEE
Q 046828 378 ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICF 457 (627)
Q Consensus 378 l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaF 457 (627)
...+..|.+-|..|-|+..|+.|+++|+|-+ |.+||.. ++. ....+..||..- |..-.|
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~-vv~WdW~-------~~~------------~~l~f~SGH~~N-vfQaKF 193 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQ-VVVWDWV-------SGS------------PKLSFESGHCNN-VFQAKF 193 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccce-EEeehhh-------ccC------------cccccccccccc-hhhhhc
Confidence 4567889999999999999999999999987 7899985 221 445566787754 333346
Q ss_pred cc--CCCEEEEEeCCCeEEEEEcCCCCCee---ecccccccccCCCCCCCccCCCCCCC
Q 046828 458 SH--YSQWIAIVSSRGTCHIFVLTPFGGET---VLQIQNSHVDRPTLSPVLSVPWWSSP 511 (627)
Q Consensus 458 Sp--Dg~~Las~S~dgTvhIw~i~~~gg~~---~~~~h~s~v~~~~~~p~~~~~~~~~~ 511 (627)
=| +.+-|++++.||-|++=.+...+... .+..|..++..-.+.|-.+.+-|...
T Consensus 194 iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~g 252 (559)
T KOG1334|consen 194 IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCG 252 (559)
T ss_pred cCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccc
Confidence 55 55789999999999998887765443 45566665554445555555555444
No 298
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.66 E-value=5 Score=39.67 Aligned_cols=57 Identities=9% Similarity=0.030 Sum_probs=42.2
Q ss_pred cEEEEEECCCCceEEEE-ecCC------eEEEEEecCcEEEEEe-CCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVL-RFRS------TVYMVRCSPRIVAVGL-AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL-~f~s------~V~sV~~s~~~LaV~~-~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.|..+|+++|+.+.+. .... ......+....++++. .+.|+++|+.|++.+.....
T Consensus 86 ~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 86 GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 56999999999999984 4331 2234445566777776 78999999999999888765
No 299
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=94.64 E-value=4.7 Score=41.87 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=38.9
Q ss_pred CCCCCeEEEEECCCCeEEE-----EeccCCCCeEEEEECCCCCE-EEEEeCCCCEEEEEeCC
Q 046828 361 TDIAGMVVVKDIVSRSVIS-----QFRAHTSPISALCFDRSGTL-LVTASIHGNNINIFRIM 416 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~-----~~~aH~~~Is~laFspdG~l-LaTaS~dGt~I~Vwdi~ 416 (627)
+.+||.+.|||+....... +-..|.+.|....|++-|.+ |.--|+.-.-++|-|+.
T Consensus 221 ~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 221 VFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred EecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 4589999999998764322 22357889999999987754 33344443346888875
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.60 E-value=5.8 Score=40.06 Aligned_cols=99 Identities=15% Similarity=0.098 Sum_probs=60.3
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH 444 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~ 444 (627)
|.|..+|.. ++....+. .-...+.|+|+|||+.|..+......|..|++.... +. + .....+..+.
T Consensus 115 g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~-----~~------~-~~~~~~~~~~ 180 (246)
T PF08450_consen 115 GSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADG-----GE------L-SNRRVFIDFP 180 (246)
T ss_dssp EEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTT-----CC------E-EEEEEEEE-S
T ss_pred cceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccc-----cc------e-eeeeeEEEcC
Confidence 667777777 44333222 234568999999999887666555557777764211 10 0 0011223332
Q ss_pred ecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 445 RGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 445 rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
.+. .....+++..+|+..++.-..+.|++|+-+
T Consensus 181 ~~~--g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 181 GGP--GYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp SSS--CEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred CCC--cCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 221 237889999999988888889999888754
No 301
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.11 Score=55.94 Aligned_cols=96 Identities=20% Similarity=0.153 Sum_probs=72.4
Q ss_pred EEEEECCCCeEEEEeccCCCCeEEEEECCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee
Q 046828 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGT-LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR 445 (627)
Q Consensus 367 V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~-lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r 445 (627)
|++.+..+.+....+..|..-|..|+|||... +|..+|.+.+ |+|+|+.... .+..|...
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nk-iki~dlet~~-----------------~vssy~a~- 235 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNK-IKIMDLETSC-----------------VVSSYIAY- 235 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCce-EEEEecccce-----------------eeeheecc-
Confidence 78888777777777888999999999999988 7778888765 8999996221 01233321
Q ss_pred cCCcCcEEEEEEccCCC-EEEEEeCCCeEEEEEcCCCCCee
Q 046828 446 GMTSAVIQDICFSHYSQ-WIAIVSSRGTCHIFVLTPFGGET 485 (627)
Q Consensus 446 G~t~a~I~sIaFSpDg~-~Las~S~dgTvhIw~i~~~gg~~ 485 (627)
..|++++|.-|.. +|..|-.+|.|.|||+....+..
T Consensus 236 ----~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~ 272 (463)
T KOG1645|consen 236 ----NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPL 272 (463)
T ss_pred ----CCceeeeeccCCcceeEEeccCceEEEEEccCCCchH
Confidence 3499999998665 66677789999999998766543
No 302
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.26 E-value=0.13 Score=39.09 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=28.6
Q ss_pred cCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 449 SAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 449 ~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
.+.|..++|+|....||+++.||.|.||+++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999984
No 303
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=94.25 E-value=0.17 Score=63.14 Aligned_cols=119 Identities=13% Similarity=0.176 Sum_probs=86.3
Q ss_pred CCCCCCeEEEEECCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCC--------------CC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKG--------------RS 424 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~--------------~~ 424 (627)
+++.||.|++|.-..++.+..++ +-.+.|+.+.|+.+|.....+.-||. +-+|++.|.+-.+ .+
T Consensus 2225 tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~-l~l~q~~pk~~~s~qchnk~~~Df~Fi~s 2303 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGD-LSLWQASPKPYTSWQCHNKALSDFRFIGS 2303 (2439)
T ss_pred ecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCc-eeecccCCcceeccccCCccccceeeeeh
Confidence 56799999999999999888887 44588999999999999999999998 7999987643110 00
Q ss_pred C--CCccc------cCCCC----ceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 425 G--SASQT------YDWTS----SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 425 g--~~~~~------~~~~~----~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
+ +.+++ ..|.+ ..+.+.+. |. ..++++++-|.-+.|.+|+.+|-|.|||+....-
T Consensus 2304 ~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~---H~-~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2304 LLATAGRSSDNRNVCLWDTLLPPMNSLVHTC---HD-GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred hhhccccCCCCCcccchhcccCcccceeeee---cC-CCceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence 0 00011 12222 11223322 22 2379999999999999999999999999986543
No 304
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.21 E-value=0.12 Score=59.00 Aligned_cols=99 Identities=16% Similarity=0.294 Sum_probs=72.1
Q ss_pred CCCCCCeEEEEECCCC---------------eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCC
Q 046828 360 DTDIAGMVVVKDIVSR---------------SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRS 424 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~---------------~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~ 424 (627)
.++.||.++|..+.+. ..-.++.+|...|.-+.|+...+.|-|.+.+|- |.||-+- .
T Consensus 31 cgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl-IiVWmly-------k 102 (1189)
T KOG2041|consen 31 CGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL-IIVWMLY-------K 102 (1189)
T ss_pred eccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce-EEEEeee-------c
Confidence 4567888887765432 123467899999999999999999999999995 8999875 3
Q ss_pred CCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 425 GSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 425 g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
|+ | .-+.-......+|.+++|..||+.|++.-.||-|.|=.+
T Consensus 103 gs------W------~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 103 GS------W------CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred cc------H------HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 32 1 111111112356999999999999999999998865444
No 305
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.17 E-value=0.14 Score=58.48 Aligned_cols=102 Identities=12% Similarity=0.088 Sum_probs=75.8
Q ss_pred CCCCCeEEEEECCCCeEEEE-eccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 361 TDIAGMVVVKDIVSRSVISQ-FRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~-~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
+...|.|.+|.-..++.+.. ..+-...+..++.|++..+.|.|+..|. |-||.+.. .. . ..
T Consensus 51 GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~-V~v~ql~~-~~-----p-----------~~ 112 (726)
T KOG3621|consen 51 GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR-VSVFQLNK-EL-----P-----------RD 112 (726)
T ss_pred ecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce-EEeehhhc-cC-----C-----------Cc
Confidence 45678999999877654322 2223456778899999999999999997 78998862 11 0 12
Q ss_pred EEEEeecCC--cCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 440 LYKLHRGMT--SAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 440 l~~l~rG~t--~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
+..+.+++. ..+|++++||+|++.|.+|.+.|+|+.-.++.
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 333445554 45699999999999999999999999998876
No 306
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=94.15 E-value=5.9 Score=41.34 Aligned_cols=115 Identities=15% Similarity=0.250 Sum_probs=65.8
Q ss_pred CCCeEEEEECC-----CCeEEEEec--cC-CCCeEEEEECCCCCEEEEEeCC-CC---------EEEEEeCCCCCCCCCC
Q 046828 363 IAGMVVVKDIV-----SRSVISQFR--AH-TSPISALCFDRSGTLLVTASIH-GN---------NINIFRIMPSSSKGRS 424 (627)
Q Consensus 363 ~dG~V~IwD~~-----s~~~l~~~~--aH-~~~Is~laFspdG~lLaTaS~d-Gt---------~I~Vwdi~p~~~~~~~ 424 (627)
..|.++-|-+. ..+....|. .| ...|.++.|+|.-++|..|+.. .. -+..|++..... -
T Consensus 117 Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P---y 193 (282)
T PF15492_consen 117 YRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP---Y 193 (282)
T ss_pred ccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCC---c
Confidence 55555544432 223334433 33 6789999999998887776542 11 145676642100 0
Q ss_pred CCC-ccc-cCCCCc----------eeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 425 GSA-SQT-YDWTSS----------HVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 425 g~~-~~~-~~~~~~----------~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
... .+. .+.... ..+++- +++.....|..|+.||||+.||+...+|++-||++...
T Consensus 194 yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs-~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 194 YKQVTSSEDDITASSKRRGLLRIPSFKFFS-RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EEEccccCccccccccccceeeccceeeee-ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 000 000 111100 011111 23434456999999999999999999999999999654
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.76 E-value=0.96 Score=45.78 Aligned_cols=98 Identities=26% Similarity=0.275 Sum_probs=60.9
Q ss_pred CeEEEEECCCCeEEEEecc-----CCCCeEEEEECCCCCEEEEEeCCCCE-----EEEEeCCCCCCCCCCCCCccccCCC
Q 046828 365 GMVVVKDIVSRSVISQFRA-----HTSPISALCFDRSGTLLVTASIHGNN-----INIFRIMPSSSKGRSGSASQTYDWT 434 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~a-----H~~~Is~laFspdG~lLaTaS~dGt~-----I~Vwdi~p~~~~~~~g~~~~~~~~~ 434 (627)
+.+.++|+.+++....+.. .....+.++++|+|.+.+|-+..... =+||.+.+. +
T Consensus 60 ~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~------~--------- 124 (246)
T PF08450_consen 60 GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD------G--------- 124 (246)
T ss_dssp TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT------S---------
T ss_pred CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC------C---------
Confidence 3456669988854333332 23457889999999998887765320 135555432 1
Q ss_pred CceeEEEEEeecCCcCcEEEEEEccCCCEEE-EEeCCCeEEEEEcCCCCC
Q 046828 435 SSHVHLYKLHRGMTSAVIQDICFSHYSQWIA-IVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 435 ~~~~~l~~l~rG~t~a~I~sIaFSpDg~~La-s~S~dgTvhIw~i~~~gg 483 (627)
.+..+..+.. .-+.|+|+||++.|. +-+..+.|..|+++..++
T Consensus 125 ----~~~~~~~~~~--~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 125 ----KVTVVADGLG--FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp ----EEEEEEEEES--SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred ----eEEEEecCcc--cccceEECCcchheeecccccceeEEEecccccc
Confidence 2222333332 368999999999776 567788899999876554
No 308
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.68 E-value=1.9 Score=48.11 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=53.5
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCC----eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAA----QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~----~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~ 253 (627)
..+.++|+.+++.-..+.|...-..-+|++ +.|+.+... .||++|+.+.+.. .+..... .+ .
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~g----------i~-~ 285 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFG----------IN-T 285 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCc----------cc-c
Confidence 458899999999888888888777888888 777766532 4999999887733 3433211 11 0
Q ss_pred cceeeEcCceEEEcCC
Q 046828 254 YGPMAVGPRWLAYASN 269 (627)
Q Consensus 254 ~~~iAl~~r~LAy~~~ 269 (627)
.+.++-.+++|+|.++
T Consensus 286 ~Ps~spdG~~ivf~Sd 301 (425)
T COG0823 286 SPSWSPDGSKIVFTSD 301 (425)
T ss_pred CccCCCCCCEEEEEeC
Confidence 1225556689998864
No 309
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=93.65 E-value=0.45 Score=49.35 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=45.9
Q ss_pred EEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC
Q 046828 391 LCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR 470 (627)
Q Consensus 391 laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d 470 (627)
++.+.+|++||.--+. .|-|=..+.+. .+.. ...+..+ .....-..++||||+..||.+.+.
T Consensus 3 ~~~~~~Gk~lAi~qd~--~iEiRsa~Ddf--------------~si~-~kcqVpk-D~~PQWRkl~WSpD~tlLa~a~S~ 64 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQ--CIEIRSAKDDF--------------SSII-GKCQVPK-DPNPQWRKLAWSPDCTLLAYAEST 64 (282)
T ss_pred eeecCCCcEEEEEecc--EEEEEeccCCc--------------hhee-EEEecCC-CCCchheEEEECCCCcEEEEEcCC
Confidence 5778999999886544 34433322111 1111 1112211 112247889999999999999999
Q ss_pred CeEEEEEcCC
Q 046828 471 GTCHIFVLTP 480 (627)
Q Consensus 471 gTvhIw~i~~ 480 (627)
|||++||+.-
T Consensus 65 G~i~vfdl~g 74 (282)
T PF15492_consen 65 GTIRVFDLMG 74 (282)
T ss_pred CeEEEEeccc
Confidence 9999999864
No 310
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.29 Score=55.46 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=61.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe-ecCCcCcEEEEEEccCCCEE
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH-RGMTSAVIQDICFSHYSQWI 464 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~-rG~t~a~I~sIaFSpDg~~L 464 (627)
..|-.+-|+|.=.++|++..+|+ +-+.++. . ++++.+- +|.. . ..+++|.|||+.|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~ge-lli~R~n-~-------------------qRlwtip~p~~~-v-~~sL~W~~DGkll 77 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGE-LLIHRLN-W-------------------QRLWTIPIPGEN-V-TASLCWRPDGKLL 77 (665)
T ss_pred cceEEEEEcCccchhheeccCCc-EEEEEec-c-------------------ceeEeccCCCCc-c-ceeeeecCCCCEE
Confidence 45777889999999999999998 4566653 1 3666665 4543 1 2599999999999
Q ss_pred EEEeCCCeEEEEEcCCCCCeee
Q 046828 465 AIVSSRGTCHIFVLTPFGGETV 486 (627)
Q Consensus 465 as~S~dgTvhIw~i~~~gg~~~ 486 (627)
|++=.||||.|-|++..++...
T Consensus 78 aVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 78 AVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred EEEecCCeEEEEEccCCCceec
Confidence 9999999999999998776553
No 311
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.44 E-value=0.53 Score=54.28 Aligned_cols=101 Identities=21% Similarity=0.234 Sum_probs=71.7
Q ss_pred CCCCCCeEEEEECCCC-eEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 360 DTDIAGMVVVKDIVSR-SVISQFRAHTSPISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
....|-.|..||+.+. .++..+..-.+.-+.++|+- ++..|| |.+|..|+|||+. . |+
T Consensus 132 tcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla--sshg~~i~vwd~r-~------gs----------- 191 (1081)
T KOG0309|consen 132 TCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA--SSHGNDIFVWDLR-K------GS----------- 191 (1081)
T ss_pred eccccccceeeeccCCCcceeeeecccccCceeeecccCcchhh--hccCCceEEEecc-C------CC-----------
Confidence 4567888999999886 45666655555667788886 566664 4567789999986 2 22
Q ss_pred eEEEEEeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCC
Q 046828 438 VHLYKLHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~g 482 (627)
..+..+.+ + .+.|+.|+|.. --..+.+.+.||||+.|+-+...
T Consensus 192 ~pl~s~K~-~-vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 192 TPLCSLKG-H-VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred cceEEecc-c-ceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 14555544 3 35699999976 33467789999999999987543
No 312
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=93.20 E-value=0.17 Score=56.90 Aligned_cols=55 Identities=13% Similarity=0.206 Sum_probs=44.8
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMP 417 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p 417 (627)
-+..||.|.+||...+. ..+..+.-..+.++|+|+|.+++.|+..|. +.+||+.-
T Consensus 276 lGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~AL 330 (545)
T PF11768_consen 276 LGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMAL 330 (545)
T ss_pred EEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCce-EEEEEeec
Confidence 46789999999998763 333334456788999999999999999998 79999864
No 313
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=0.29 Score=55.49 Aligned_cols=55 Identities=15% Similarity=0.312 Sum_probs=47.8
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeE-EEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPIS-ALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is-~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
....+|.|.+.-+. -+.+.+|.-|..++. +++|.|||++||.|=.||+ |++-|+.
T Consensus 37 ~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve 92 (665)
T KOG4640|consen 37 TRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVE 92 (665)
T ss_pred eeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEcc
Confidence 34578989998887 567888887887877 9999999999999999998 8999987
No 314
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=92.96 E-value=0.36 Score=50.25 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=46.2
Q ss_pred CCCCCCeEEEEECC-CCeEEEE-eccCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCC
Q 046828 360 DTDIAGMVVVKDIV-SRSVISQ-FRAHTSPISALCFDR-SGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 360 ~~~~dG~V~IwD~~-s~~~l~~-~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~ 416 (627)
.++.||.+.-||++ .++.+-+ .+-|+..|.+|.=+| .+.+|+|||-|-+ |++||+.
T Consensus 183 tGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtR 241 (339)
T KOG0280|consen 183 TGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTR 241 (339)
T ss_pred ecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehh
Confidence 46799999999998 3444444 678999999988876 5999999999976 8999986
No 315
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=92.76 E-value=0.24 Score=52.56 Aligned_cols=108 Identities=15% Similarity=0.202 Sum_probs=75.1
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
.+.+-.|-+-|++++-.. .|. ..+.|-++.|.-.+.++..|...|. |-+.|+.... .|. .++.
T Consensus 230 ~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~rn----qG~----------~~~a 292 (425)
T KOG2695|consen 230 VGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCRN----QGN----------GWCA 292 (425)
T ss_pred ccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeecc----cCC----------Ccce
Confidence 345667888898887432 344 5678999999999999999999998 6888986221 121 1344
Q ss_pred EEEeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCCCeeecc
Q 046828 441 YKLHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTPFGGETVLQ 488 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~gg~~~~~ 488 (627)
..+. |.. .|+++-.=. ++++|.+++.+|+|.+||+........+.
T Consensus 293 ~rly--h~S-svtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~ 338 (425)
T KOG2695|consen 293 QRLY--HDS-SVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVM 338 (425)
T ss_pred EEEE--cCc-chhhhhhhccccceEeeccCcCceeEeeehhhhccccee
Confidence 5453 232 356654444 67899999999999999987665533333
No 316
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.75 E-value=11 Score=40.22 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=37.0
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
.-|.|.-+|. .+..+..+..|-.--+.|+|||||+.|..+......|+-|++.
T Consensus 141 ~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 141 PTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred CcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 3455555554 4555666666555557899999999999998876657777765
No 317
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.70 E-value=0.3 Score=37.20 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=28.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 385 TSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 385 ~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
..+|.+++|+|...+||.++.+|. |.||++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCe-EEEEECC
Confidence 457999999999999999999998 7899873
No 318
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=92.67 E-value=0.47 Score=50.39 Aligned_cols=84 Identities=18% Similarity=0.226 Sum_probs=57.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCC-----------cCcEE
Q 046828 385 TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMT-----------SAVIQ 453 (627)
Q Consensus 385 ~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t-----------~a~I~ 453 (627)
..-|++|.|+.+|.+||||...|+ +-+|.-.... .| + -..+.....|. .-+|.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGR-Vv~f~r~~~~----~~----------e-y~~~t~fqshepEFDYLkSleieEKin 88 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGR-VVLFEREKLY----KG----------E-YNFQTEFQSHEPEFDYLKSLEIEEKIN 88 (433)
T ss_pred hcceeeEEeecccceEeecCCCCe-EEEeeccccc----cc----------c-eeeeeeeeccCcccchhhhhhhhhhhh
Confidence 346899999999999999999999 5778643221 11 0 01222211121 12488
Q ss_pred EEEEccCCC--EEEEEeCCCeEEEEEcCCCCCe
Q 046828 454 DICFSHYSQ--WIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 454 sIaFSpDg~--~Las~S~dgTvhIw~i~~~gg~ 484 (627)
.|.|-+++. .+..++.|.||++|.+...+..
T Consensus 89 kIrw~~~~n~a~FLlstNdktiKlWKi~er~~k 121 (433)
T KOG1354|consen 89 KIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSK 121 (433)
T ss_pred hceecCCCCccEEEEecCCcceeeeeeeccccc
Confidence 999998765 5667889999999999876543
No 319
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=92.61 E-value=1.9 Score=46.67 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=40.8
Q ss_pred CCCCCeEEEEECCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 361 TDIAGMVVVKDIVSRSVISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
++.|+.|+|-....--.+..|- +|+.-|+.|+.-++ .+|+++|-|+| +++||+.
T Consensus 169 aDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t-lr~Wd~~ 223 (390)
T KOG3914|consen 169 ADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT-LRLWDIT 223 (390)
T ss_pred ecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc-EEEEecc
Confidence 4567777776555444455554 79999999999765 45899999998 7999997
No 320
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=92.34 E-value=0.25 Score=54.68 Aligned_cols=87 Identities=14% Similarity=0.227 Sum_probs=63.3
Q ss_pred EEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCC
Q 046828 369 VKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMT 448 (627)
Q Consensus 369 IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t 448 (627)
+|.-.+...-..+.+-.-|+..++|||-|++|+.....| |.+|.-. . + -++.+++
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~--V~~~~g~-~------~------------~~l~~~~---- 70 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG--VECWGGP-S------K------------AKLVRFR---- 70 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhccc--eEEcccc-c------h------------hheeeee----
Confidence 355555544455555677899999999999999988776 7899753 1 1 1343332
Q ss_pred cCcEEEEEEccCCCEEEEEeCCCe---------------EEEEEcCC
Q 046828 449 SAVIQDICFSHYSQWIAIVSSRGT---------------CHIFVLTP 480 (627)
Q Consensus 449 ~a~I~sIaFSpDg~~Las~S~dgT---------------vhIw~i~~ 480 (627)
...|+.+.|||.++||.+-+..+. +.|||+..
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s 117 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS 117 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccC
Confidence 346999999999999999877665 77888764
No 321
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=92.34 E-value=15 Score=37.65 Aligned_cols=40 Identities=25% Similarity=0.446 Sum_probs=27.3
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeC
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPL 122 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~ 122 (627)
++-|++|.+.|+-++++.......+++.... |.-+.+++.
T Consensus 7 ~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~--I~ql~vl~~ 46 (275)
T PF00780_consen 7 GDRLLVGTEDGLYVYDLSDPSKPTRILKLSS--ITQLSVLPE 46 (275)
T ss_pred CCEEEEEECCCEEEEEecCCccceeEeecce--EEEEEEecc
Confidence 5677888999999999955454556665433 666666654
No 322
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.23 E-value=8 Score=41.08 Aligned_cols=42 Identities=26% Similarity=0.268 Sum_probs=34.1
Q ss_pred CCCeEEEEECC-CCeEEEEeccCCCCeEEEEECCCCCEEEEEe
Q 046828 363 IAGMVVVKDIV-SRSVISQFRAHTSPISALCFDRSGTLLVTAS 404 (627)
Q Consensus 363 ~dG~V~IwD~~-s~~~l~~~~aH~~~Is~laFspdG~lLaTaS 404 (627)
..|.|-|||.. +.+.+..|..|-----.|.+.|||+.|+.|-
T Consensus 75 g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 75 GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence 46899999999 7788899988765555678999998888873
No 323
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=91.97 E-value=4.2 Score=44.39 Aligned_cols=54 Identities=20% Similarity=0.162 Sum_probs=36.3
Q ss_pred CcEEEEEECCCCceEEEEecCCeEEEEEe-cCcEEEEEeCCeEEEEeCCCCceeEE
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRSTVYMVRC-SPRIVAVGLAAQIYCFDALTLESKFS 233 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s~V~sV~~-s~~~LaV~~~~~I~i~D~~t~e~~~t 233 (627)
++.+.-+|+++|+.+-+.++.+.. .+.. ..+++++..+++++++|+.+++.+..
T Consensus 265 ~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 265 NGNLVALDLRSGQIVWKREYGSVN-DFAVDGGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred CCeEEEEECCCCCEEEeecCCCcc-CcEEECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 456777788888887776655422 2223 33555666678999999999986544
No 324
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.76 E-value=0.9 Score=52.53 Aligned_cols=57 Identities=23% Similarity=0.227 Sum_probs=42.8
Q ss_pred cEEEEEECCCC-ceEEEEecC-CeEEEEEecC----cEEEEEeCCeEEEEeCC--CCceeEEEEc
Q 046828 180 TAVRFYSLRSH-NYVHVLRFR-STVYMVRCSP----RIVAVGLAAQIYCFDAL--TLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~-~~V~tL~f~-s~V~sV~~s~----~~LaV~~~~~I~i~D~~--t~e~~~tl~~ 236 (627)
+-|++||++.| .++++++.+ +.|+.++|++ +++..+.++.|+.||-. |-|..+++++
T Consensus 180 ~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt 244 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT 244 (1081)
T ss_pred CceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc
Confidence 55999999876 568889854 5899999997 56777788899999865 3344555544
No 325
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=91.61 E-value=5.7 Score=40.69 Aligned_cols=48 Identities=13% Similarity=-0.062 Sum_probs=39.3
Q ss_pred CCceE--EEEecCCeEEEEEecCcEEEEEeCCeEEEEeCCCCceeEEEEc
Q 046828 189 SHNYV--HVLRFRSTVYMVRCSPRIVAVGLAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 189 t~~~V--~tL~f~s~V~sV~~s~~~LaV~~~~~I~i~D~~t~e~~~tl~~ 236 (627)
.|+.. .++++.+...++.+...+|++..++.|.||++.+++.++++..
T Consensus 216 ~G~~~r~~~i~W~~~p~~~~~~~pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 216 NGEPSRKSTIQWSSAPQSVAYSSPYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred CCCcCcccEEEcCCchhEEEEECCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 45444 3788888888899888788777778899999999999999865
No 326
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=91.50 E-value=2 Score=38.82 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=46.5
Q ss_pred eEEEEE---CCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCE
Q 046828 388 ISALCF---DRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQW 463 (627)
Q Consensus 388 Is~laF---spdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~ 463 (627)
|++|+| +-|| ..|+.||+|.. ||||+=. ..++++.. ...|.+++-... ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~~~---------------------e~~~Ei~e---~~~v~~L~~~~~-~~ 55 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFE-IRVFKGD---------------------EIVAEITE---TDKVTSLCSLGG-GR 55 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcE-EEEEeCC---------------------cEEEEEec---ccceEEEEEcCC-CE
Confidence 455554 4444 46889999986 8999843 25666643 345888877777 55
Q ss_pred EEEEeCCCeEEEEEc
Q 046828 464 IAIVSSRGTCHIFVL 478 (627)
Q Consensus 464 Las~S~dgTvhIw~i 478 (627)
++.+...|||-||+-
T Consensus 56 F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 56 FAYALANGTVGVYDR 70 (111)
T ss_pred EEEEecCCEEEEEeC
Confidence 888999999998864
No 327
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=91.29 E-value=24 Score=39.90 Aligned_cols=57 Identities=16% Similarity=0.067 Sum_probs=38.2
Q ss_pred cEEEEEECCCCceEEEEecCCe-------E--EEEEecC-cEEEEE-eCCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRST-------V--YMVRCSP-RIVAVG-LAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~-------V--~sV~~s~-~~LaV~-~~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.|.-.|+++|+.+-+.+.... + ..+.+.. ..|.++ .++.|+.+|+.|++.+.....
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 5677889999998877654322 1 1123323 445444 577899999999999877643
No 328
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=91.28 E-value=3 Score=51.81 Aligned_cols=110 Identities=13% Similarity=0.031 Sum_probs=63.9
Q ss_pred CCCCeEEEEECCCCeEEEEeccC---------------CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCC
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAH---------------TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGS 426 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH---------------~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~ 426 (627)
..++.|++||..++... .+.+. -.....|+|+|+|..|..+......|++||+. . +.
T Consensus 702 ~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~-t------g~ 773 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLK-T------GG 773 (1057)
T ss_pred CCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECC-C------Cc
Confidence 35678999998776432 22211 12245699999999776666665569999975 1 11
Q ss_pred Cc--cccCCCCceeEEEEEe--ecC----CcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 427 AS--QTYDWTSSHVHLYKLH--RGM----TSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 427 ~~--~~~~~~~~~~~l~~l~--rG~----t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.. ..++.. ....++.+- .|. .-..-..|+|++||+.+++-+.+++|++|+...
T Consensus 774 ~~~~~gg~~~-~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t 834 (1057)
T PLN02919 774 SRLLAGGDPT-FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT 834 (1057)
T ss_pred EEEEEecccc-cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC
Confidence 00 000000 000011110 000 001146899999999988899999999999864
No 329
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.13 E-value=6.7 Score=46.09 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=36.7
Q ss_pred CcEEEEEECCCCceEEEEecCCeEEEEEecC-------cEEEEEeCCeEEEEeCC
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP-------RIVAVGLAAQIYCFDAL 226 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~-------~~LaV~~~~~I~i~D~~ 226 (627)
+++|.|-++-+.+..+++.|+-++.+|++.| +..++|....+.++.-.
T Consensus 92 DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~ 146 (846)
T KOG2066|consen 92 DGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERN 146 (846)
T ss_pred CCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcceEEEehhh
Confidence 4779999999999999999999999999976 34444433337777543
No 330
>PRK02888 nitrous-oxide reductase; Validated
Probab=90.78 E-value=2.7 Score=48.68 Aligned_cols=118 Identities=10% Similarity=0.063 Sum_probs=68.8
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe---CCCCE-----------EEEEeCCCCCCCCCCCC
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTAS---IHGNN-----------INIFRIMPSSSKGRSGS 426 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS---~dGt~-----------I~Vwdi~p~~~~~~~g~ 426 (627)
....+++.+.|..+.+.+.++.--. ...-++|+|||+++.+.+ +.|.. +.+|++.-....-..|.
T Consensus 211 ~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK 289 (635)
T PRK02888 211 KKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGK 289 (635)
T ss_pred cceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCC
Confidence 3567889999999998888877543 336679999999998886 43332 23343320000000110
Q ss_pred C-------ccccCCCC----ceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeC-CCeEEEEEcCCCC
Q 046828 427 A-------SQTYDWTS----SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSS-RGTCHIFVLTPFG 482 (627)
Q Consensus 427 ~-------~~~~~~~~----~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~-dgTvhIw~i~~~g 482 (627)
. ..-.|... ....+..+.-|. ....|++||||+++.+++. +.||.|+++....
T Consensus 290 ~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGK---sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 290 FKTIGGSKVPVVDGRKAANAGSALTRYVPVPK---NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred EEEECCCEEEEEECCccccCCcceEEEEECCC---CccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 0 00000000 001222222222 2578999999999988776 8899999998744
No 331
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=90.76 E-value=0.71 Score=49.51 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=45.1
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC----cEEEEEe-CCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP----RIVAVGL-AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~----~~LaV~~-~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.|=+||+++++.|..+....++.+|.++. .++++.. ++.+++||+.|++.++++..
T Consensus 269 teVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 269 TEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred eEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 668889999999999999988999999985 4445544 45799999999999999865
No 332
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.53 E-value=1 Score=52.55 Aligned_cols=93 Identities=16% Similarity=0.162 Sum_probs=65.7
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
+.-.|.|.+.+..-. . .+...|... +.+|.++||+|.||+ |.|..+.... - .+.
T Consensus 55 GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~~-----~------------~~~ 108 (846)
T KOG2066|consen 55 GTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTDD-----E------------ITQ 108 (846)
T ss_pred ccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCc-EEEeeccCCc-----c------------cee
Confidence 456788999887643 2 344455443 789999999999998 5777765111 0 255
Q ss_pred EEEeecCCcCcEEEEEEccC-----CCEEEEEeCCCeEEEEEcCCCCCee
Q 046828 441 YKLHRGMTSAVIQDICFSHY-----SQWIAIVSSRGTCHIFVLTPFGGET 485 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpD-----g~~Las~S~dgTvhIw~i~~~gg~~ 485 (627)
+.+.| .|.+|+++|| ++.+++|+..| +-++.-+-++-..
T Consensus 109 ~df~r-----piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~ 152 (846)
T KOG2066|consen 109 YDFKR-----PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD 152 (846)
T ss_pred EecCC-----cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc
Confidence 66644 4899999998 78889999999 8888765554443
No 333
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=89.86 E-value=0.9 Score=48.99 Aligned_cols=105 Identities=13% Similarity=0.189 Sum_probs=59.7
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcc-ccCCCCceeEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQ-TYDWTSSHVHLY 441 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~-~~~~~~~~~~l~ 441 (627)
..+.+.|+|+.+++....... ...+....|||+|+.||-.... .|.++++. . +...+ ..+... .+
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~~--nly~~~~~-~------~~~~~lT~dg~~---~i- 86 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRDN--NLYLRDLA-T------GQETQLTTDGEP---GI- 86 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEETT--EEEEESST-T------SEEEESES--TT---TE-
T ss_pred cceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEecC--ceEEEECC-C------CCeEEeccccce---eE-
Confidence 346799999999765433333 6789999999999999998754 57888763 1 10000 000000 00
Q ss_pred EEeecCC--------cCcEEEEEEccCCCEEEEEeCC-CeEEEEEcCCCCC
Q 046828 442 KLHRGMT--------SAVIQDICFSHYSQWIAIVSSR-GTCHIFVLTPFGG 483 (627)
Q Consensus 442 ~l~rG~t--------~a~I~sIaFSpDg~~Las~S~d-gTvhIw~i~~~gg 483 (627)
.-|.. -..-..+-|||||++||....| ..|+.+.+..+..
T Consensus 87 --~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 87 --YNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp --EESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESS
T ss_pred --EcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCC
Confidence 00110 0012457899999999976554 4467666655543
No 334
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=89.64 E-value=35 Score=37.83 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=38.5
Q ss_pred CcEEEEEECCCCceEEEEecCC-eEEEEEecC--cEEEEEeCCeEEEEeCC
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRS-TVYMVRCSP--RIVAVGLAAQIYCFDAL 226 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s-~V~sV~~s~--~~LaV~~~~~I~i~D~~ 226 (627)
|..|+||+. .|+.+.++.+.+ .|..+.|+. ++|+|..++.+++||+.
T Consensus 60 p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 60 PNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 347999986 677889998764 899999986 66777778899999986
No 335
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.52 E-value=16 Score=44.98 Aligned_cols=97 Identities=13% Similarity=0.234 Sum_probs=58.2
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC---CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH---GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d---Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
..|+|||.+ +..-..=..-..-=.+|+|-|+|.++|+--.+ ++ |.+|.- ++-. .|. +
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffEr--NGL~--hg~--------------f 281 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFER--NGLR--HGE--------------F 281 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEec--CCcc--ccc--------------c
Confidence 689999987 32111111112223579999999999986443 34 677763 3211 121 2
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEE---EeCCCeEEEEEcCCC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAI---VSSRGTCHIFVLTPF 481 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las---~S~dgTvhIw~i~~~ 481 (627)
.++.-.+.-.|..|+|+.++..||+ ......|.+|-+.-|
T Consensus 282 ~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 282 VLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 2222222222899999999999999 444445889977654
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=88.55 E-value=1 Score=52.77 Aligned_cols=98 Identities=15% Similarity=0.260 Sum_probs=70.2
Q ss_pred CCCCCCeEEEEECCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 360 DTDIAGMVVVKDIVSRSVISQ--FRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~--~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
+....|.|.||- .+|++... .+-| +.+|||+|.--.||.+=+.|. +.||.....
T Consensus 36 S~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~-~~v~~~~~~------------------- 91 (1416)
T KOG3617|consen 36 SPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGV-SDVQKTNTT------------------- 91 (1416)
T ss_pred cCCCCceEEEEe-cCCCCCccccccee---hhhhccChHHHHHhhccccce-eEEEecCCc-------------------
Confidence 455678888873 33433221 1222 456999999999999999996 799986411
Q ss_pred eEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 438 VHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
..+..-. .+++.|+-+.||+||..|.++..-|.+|+|.....|.
T Consensus 92 -e~htv~~-th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~ 135 (1416)
T KOG3617|consen 92 -ETHTVVE-THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGE 135 (1416)
T ss_pred -eeeeecc-CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccc
Confidence 2222222 2356799999999999999999999999999886543
No 337
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.90 E-value=36 Score=40.60 Aligned_cols=87 Identities=14% Similarity=0.342 Sum_probs=54.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC-ceeEEEE----EeecCCcCcEEEEEEccC-
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS-SHVHLYK----LHRGMTSAVIQDICFSHY- 460 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~-~~~~l~~----l~rG~t~a~I~sIaFSpD- 460 (627)
.|..|.+||+|++||-++..| |.|-.+ |..- |..|.. .+... ...+.+. +++......|..+.|.|.
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~--v~V~~L-P~r~-g~~~~~---~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG--VVVLEL-PRRW-GKNGEF---EDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS 158 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc--EEEEEe-cccc-Cccccc---cCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC
Confidence 488999999999999999988 345555 4310 001100 00000 0111111 122233456999999996
Q ss_pred --CCEEEEEeCCCeEEEEEcCC
Q 046828 461 --SQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 461 --g~~Las~S~dgTvhIw~i~~ 480 (627)
+..|++-++|+++++|++..
T Consensus 159 ~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 159 ESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCCCeEEEEecCCEEEEEecCC
Confidence 58999999999999999963
No 338
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.58 E-value=2.2 Score=46.98 Aligned_cols=112 Identities=17% Similarity=0.221 Sum_probs=76.8
Q ss_pred CCCCeEEEEECCCCe-EEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce-e
Q 046828 362 DIAGMVVVKDIVSRS-VISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH-V 438 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~-~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~-~ 438 (627)
-.+|.|.|+|-...- +...|+ -|.+||.++.+++.|....+....|- |.-|...+..+.. .+ .-+|.-.+ .
T Consensus 119 ~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm-VEyWs~e~~~qfP-r~----~l~~~~K~eT 192 (558)
T KOG0882|consen 119 FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM-VEYWSAEGPFQFP-RT----NLNFELKHET 192 (558)
T ss_pred ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce-eEeecCCCcccCc-cc----cccccccccc
Confidence 367889999976553 455555 69999999999999999999999885 8999875211100 00 01111110 1
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
-+|.+..- .....++.||||+..++.-+.|-+|++|.....
T Consensus 193 dLy~f~K~--Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 193 DLYGFPKA--KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred hhhccccc--ccCccceEEccccCcccccCcccEEEEEEeccc
Confidence 23332221 123889999999999999999999999998653
No 339
>PRK13616 lipoprotein LpqB; Provisional
Probab=87.24 E-value=4.5 Score=47.04 Aligned_cols=96 Identities=10% Similarity=0.136 Sum_probs=56.5
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
...+.+++.... ....+.+. ..+.-.|+|||+.|++.+....+.++.+-.. .+. ..+..+
T Consensus 378 ~s~Lwv~~~gg~-~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~------~gq-----------l~~~~v 437 (591)
T PRK13616 378 ASSLWVGPLGGV-AVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPA------TGQ-----------LARTPV 437 (591)
T ss_pred ceEEEEEeCCCc-ceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCC------Cce-----------EEEEec
Confidence 345666675332 22222332 3777899999999999986545555544210 111 111122
Q ss_pred eecCC----cCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 444 HRGMT----SAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 444 ~rG~t----~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.-|.. ...|.++.|||||++||... +|.|+|=.+.+
T Consensus 438 d~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr 477 (591)
T PRK13616 438 DASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQ 477 (591)
T ss_pred cCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEe
Confidence 11111 12499999999999999987 57777755554
No 340
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.82 E-value=1.8 Score=52.20 Aligned_cols=53 Identities=19% Similarity=0.474 Sum_probs=37.5
Q ss_pred CCCeEEEEECCCC-eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 363 IAGMVVVKDIVSR-SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 363 ~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
..|.|-..|.... .+...=..-..||++++|+.||++|+.|=.+|. |.|||+.
T Consensus 107 s~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~ 160 (1206)
T KOG2079|consen 107 SHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMH 160 (1206)
T ss_pred CchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEcc
Confidence 4455655555432 221111122579999999999999999999998 7999986
No 341
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.81 E-value=32 Score=39.03 Aligned_cols=54 Identities=9% Similarity=0.156 Sum_probs=41.9
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
.++.+|.|++||-...+.-..|++...+|..|.-+.||+.|+..... + +-+-++
T Consensus 446 vgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t-y-LlLi~t 499 (644)
T KOG2395|consen 446 VGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT-Y-LLLIDT 499 (644)
T ss_pred EeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc-E-EEEEEE
Confidence 35789999999986556667788999999999999999987654432 3 556665
No 342
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=86.18 E-value=91 Score=38.06 Aligned_cols=78 Identities=12% Similarity=0.167 Sum_probs=48.9
Q ss_pred CCeEEEEECCCCCEEEEEeCCCC-------------EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcE
Q 046828 386 SPISALCFDRSGTLLVTASIHGN-------------NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVI 452 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt-------------~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I 452 (627)
.+...++|.+...++++.+..+. .++|+|-. + ...-+.+++.+-.+.-.|
T Consensus 715 ~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~n-T----------------f~vl~~hef~~~E~~~Si 777 (1096)
T KOG1897|consen 715 ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQN-T----------------FEVLSSHEFERNETALSI 777 (1096)
T ss_pred CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCC-c----------------eeEEeeccccccceeeee
Confidence 34577888886666666655432 24444422 0 112345556554433347
Q ss_pred EEEEEccC-CCEEEEEeC----------CCeEEEEEcCC
Q 046828 453 QDICFSHY-SQWIAIVSS----------RGTCHIFVLTP 480 (627)
Q Consensus 453 ~sIaFSpD-g~~Las~S~----------dgTvhIw~i~~ 480 (627)
.++.|..| +.++++|+. .|.++||....
T Consensus 778 ~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e 816 (1096)
T KOG1897|consen 778 ISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE 816 (1096)
T ss_pred eeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec
Confidence 77779999 889999875 67888888877
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.12 E-value=56 Score=36.71 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=36.1
Q ss_pred CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEE
Q 046828 397 GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIF 476 (627)
Q Consensus 397 G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw 476 (627)
|.+|+..+.+ .|.+||+. ++ ..+.+. +-..|..|.||+|++++|..+.+ ++.|+
T Consensus 117 G~LL~~~~~~--~i~~yDw~-------~~------------~~i~~i----~v~~vk~V~Ws~~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 117 GNLLGVKSSD--FICFYDWE-------TG------------KLIRRI----DVSAVKYVIWSDDGELVALVTKD-SIYIL 170 (443)
T ss_dssp SSSEEEEETT--EEEEE-TT-------T--------------EEEEE----SS-E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred CcEEEEECCC--CEEEEEhh-------Hc------------ceeeEE----ecCCCcEEEEECCCCEEEEEeCC-eEEEE
Confidence 9999988876 38999986 23 133333 22348999999999999999865 67776
Q ss_pred EcC
Q 046828 477 VLT 479 (627)
Q Consensus 477 ~i~ 479 (627)
+.+
T Consensus 171 ~~~ 173 (443)
T PF04053_consen 171 KYN 173 (443)
T ss_dssp EE-
T ss_pred Eec
Confidence 654
No 344
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=85.93 E-value=93 Score=37.97 Aligned_cols=98 Identities=11% Similarity=0.153 Sum_probs=71.0
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
-.-.|++|+..+.+.+..-..|..++.+|...-.|..+|.|+..+. |.+-.-... .| .+++
T Consensus 846 In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~~-----eg-------------~f~e 906 (1096)
T KOG1897|consen 846 INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKGD-----EG-------------NFEE 906 (1096)
T ss_pred cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEecc-----CC-------------ceEE
Confidence 3457999999998877777788899999999999999999999876 565544311 12 3666
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
+.|-..+-++..+.+=.|..++ .+...|.+.+-..+.
T Consensus 907 vArD~~p~Wmtaveil~~d~yl-gae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 907 VARDYNPNWMTAVEILDDDTYL-GAENSGNLFTVRKDS 943 (1096)
T ss_pred eehhhCccceeeEEEecCceEE-eecccccEEEEEecC
Confidence 6665555567778776665554 566777777766653
No 345
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.66 E-value=12 Score=39.37 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=81.3
Q ss_pred CCCceEEEEecCCeEEEEEecC---cEEEEEe-CC-eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCc
Q 046828 188 RSHNYVHVLRFRSTVYMVRCSP---RIVAVGL-AA-QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPR 262 (627)
Q Consensus 188 ~t~~~V~tL~f~s~V~sV~~s~---~~LaV~~-~~-~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r 262 (627)
..|+.+..+..+..-..|.++| +-|+.+- -+ ..++||..+.+.+.++.....-. .++.+.++-+++
T Consensus 56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RH---------fyGHGvfs~dG~ 126 (366)
T COG3490 56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRH---------FYGHGVFSPDGR 126 (366)
T ss_pred cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCce---------eecccccCCCCc
Confidence 4688888888888888899986 5556553 23 47899999998887775422210 134555666666
Q ss_pred eEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCC
Q 046828 263 WLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSP 342 (627)
Q Consensus 263 ~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~ 342 (627)
||--..++
T Consensus 127 ~LYATEnd------------------------------------------------------------------------ 134 (366)
T COG3490 127 LLYATEND------------------------------------------------------------------------ 134 (366)
T ss_pred EEEeecCC------------------------------------------------------------------------
Confidence 66333221
Q ss_pred ccCCCccccCcccccccCCCCCCeEEEEECCCC-eEEEEeccCCCCeEEEEECCCCCEEEEEe
Q 046828 343 VSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR-SVISQFRAHTSPISALCFDRSGTLLVTAS 404 (627)
Q Consensus 343 ~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFspdG~lLaTaS 404 (627)
....-|+|-|||...+ +.+..|..|.----.+.+.+||++|+.+.
T Consensus 135 -----------------fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 135 -----------------FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred -----------------CCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 0124588999998865 45777888866666788999999999875
No 346
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=83.33 E-value=31 Score=31.22 Aligned_cols=86 Identities=10% Similarity=0.147 Sum_probs=57.1
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
.+++|..|+||+-. +.+..+.-+ +.|..|+-... ..++.|-.+|| |-||+-. .+
T Consensus 20 vGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGT-VGvY~~~---------------------~R 73 (111)
T PF14783_consen 20 VGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGT-VGVYDRS---------------------QR 73 (111)
T ss_pred EecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCE-EEEEeCc---------------------ce
Confidence 35789999999855 567777654 45666665555 56999999999 7999853 26
Q ss_pred EEEEeecCCcCcEEEEEEcc---CCC-EEEEEeCCCeEE
Q 046828 440 LYKLHRGMTSAVIQDICFSH---YSQ-WIAIVSSRGTCH 474 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSp---Dg~-~Las~S~dgTvh 474 (627)
+++.... ..+.++++-. ||. -|+++=++|.|-
T Consensus 74 lWRiKSK---~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKSK---NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeccC---CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 6766432 2356665544 332 566776677654
No 347
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=82.94 E-value=21 Score=42.81 Aligned_cols=55 Identities=9% Similarity=0.163 Sum_probs=43.3
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
-++.+|.||+||-...+.-..|++-..||..|..+.||++|+..... .+-++++.
T Consensus 593 vgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t--yLlLi~t~ 647 (794)
T PF08553_consen 593 VGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT--YLLLIDTL 647 (794)
T ss_pred EEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc--eEEEEEEe
Confidence 35789999999976666667788888999999999999987655543 36777764
No 348
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.82 E-value=1.8 Score=52.06 Aligned_cols=76 Identities=13% Similarity=0.195 Sum_probs=55.0
Q ss_pred CCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCC-cCcEEEEEEccCCCEEEEEeCCCeE
Q 046828 395 RSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMT-SAVIQDICFSHYSQWIAIVSSRGTC 473 (627)
Q Consensus 395 pdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t-~a~I~sIaFSpDg~~Las~S~dgTv 473 (627)
--+..+|.++..|+ +-.+|.. | -+..+.+|.. ...|.+++|+.||+.++.|=.+|-|
T Consensus 97 ~~~~~ivi~Ts~gh-vl~~d~~--------~-------------nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V 154 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGH-VLLSDMT--------G-------------NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHV 154 (1206)
T ss_pred eeeeeEEEEcCchh-hhhhhhh--------c-------------ccchhhcCCccCCcceeeEecCCCceeccccCCCcE
Confidence 34678999999998 5677763 2 1222333322 2459999999999999999999999
Q ss_pred EEEEcCCCCCeeecccccc
Q 046828 474 HIFVLTPFGGETVLQIQNS 492 (627)
Q Consensus 474 hIw~i~~~gg~~~~~~h~s 492 (627)
.+||+........+..|..
T Consensus 155 ~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 155 TVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred EEEEccCCcceeeeeecCC
Confidence 9999988665555555543
No 349
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=82.67 E-value=7.4 Score=36.40 Aligned_cols=54 Identities=9% Similarity=0.160 Sum_probs=41.7
Q ss_pred cEEEEEECC--------CCceEEEEecCCeEEEEEec-------CcEEEEEeCCeEEEEeCCCCceeEE
Q 046828 180 TAVRFYSLR--------SHNYVHVLRFRSTVYMVRCS-------PRIVAVGLAAQIYCFDALTLESKFS 233 (627)
Q Consensus 180 ~tV~lwdl~--------t~~~V~tL~f~s~V~sV~~s-------~~~LaV~~~~~I~i~D~~t~e~~~t 233 (627)
++|.|++.. ....+..|.+...|.+++.- ++.|++|....+-+||+.....+|-
T Consensus 20 gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fy 88 (136)
T PF14781_consen 20 GKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFY 88 (136)
T ss_pred CEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhh
Confidence 456666654 45678999999999888764 3799999999999999987665543
No 350
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=82.46 E-value=1.4 Score=45.35 Aligned_cols=94 Identities=14% Similarity=0.208 Sum_probs=61.0
Q ss_pred CeEEEEECCCCeEEE-EeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 365 GMVVVKDIVSRSVIS-QFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 365 G~V~IwD~~s~~~l~-~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
+..++|++...+.+. ..++ ...|.+++-+|-- .++++|+++|. +-+||.. +.+. + .-++
T Consensus 159 d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~r-------n~~~------p---~S~l- 219 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGI-VGLWDAR-------NVAM------P---VSLL- 219 (319)
T ss_pred cceeeecccccccccccccc-cccchhhhCCcccccEEEEecCCCe-EEEEEcc-------cccc------h---HHHH-
Confidence 445567665443211 1112 2349999999954 56677777875 8999986 1210 0 1112
Q ss_pred EeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCC
Q 046828 443 LHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~ 480 (627)
.-| .+.|+.|-|.| ++..|.+++.||.+--|+-+.
T Consensus 220 --~ah-k~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 220 --KAH-KAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred --HHh-hhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 222 34699999999 889999999999998888763
No 351
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=81.87 E-value=2.9 Score=49.19 Aligned_cols=55 Identities=22% Similarity=0.345 Sum_probs=48.5
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
+-+-|.+.+|...+.+.-..-..|+.+|.-|.|||+|+.|.|+..-|. +.+|..+
T Consensus 77 gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~-v~lwr~d 131 (1416)
T KOG3617|consen 77 GWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGS-VHLWRYD 131 (1416)
T ss_pred ccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCce-eEEEEee
Confidence 446788999999988877777799999999999999999999999996 7999875
No 352
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=81.32 E-value=23 Score=38.66 Aligned_cols=95 Identities=13% Similarity=0.155 Sum_probs=67.0
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC--CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH--GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d--Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
....|.+.|+.+.+.+..+.--. --..++|+|+|+.+..+... ...+.++|.. ++ ..+
T Consensus 94 ~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~-------t~------------~~~ 153 (381)
T COG3391 94 DSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA-------TN------------KVT 153 (381)
T ss_pred CCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCC-------CC------------eEE
Confidence 36789999988877766665322 44678999999888887773 2336666643 12 134
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCC
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTP 480 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~ 480 (627)
.....|..+ ..++++|||+.+.+.. .++++.+++.+.
T Consensus 154 ~~~~vG~~P---~~~a~~p~g~~vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 154 ATIPVGNTP---TGVAVDPDGNKVYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred EEEecCCCc---ceEEECCCCCeEEEEecCCCeEEEEeCCC
Confidence 445566644 8899999999777665 789999999554
No 353
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=81.08 E-value=10 Score=41.94 Aligned_cols=85 Identities=19% Similarity=0.318 Sum_probs=55.8
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe-e-----cCCc
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH-R-----GMTS 449 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~-r-----G~t~ 449 (627)
.++..+.....+|++++.|.=| ++|.|.++|+ +-|.|++ |. .-+|.-. + ....
T Consensus 77 ~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~-l~viD~R--------GP-----------avI~~~~i~~~~~~~~~~ 135 (395)
T PF08596_consen 77 LPLTLLDAKQGPVTALKNSDIG-FVAIGYESGS-LVVIDLR--------GP-----------AVIYNENIRESFLSKSSS 135 (395)
T ss_dssp EEEEEE---S-SEEEEEE-BTS-EEEEEETTSE-EEEEETT--------TT-----------EEEEEEEGGG--T-SS--
T ss_pred CchhheeccCCcEeEEecCCCc-EEEEEecCCc-EEEEECC--------CC-----------eEEeeccccccccccccc
Confidence 3556666678999999998666 9999999998 6899984 32 1333311 1 1122
Q ss_pred CcEEEEEEcc-----CC---CEEEEEeCCCeEEEEEcCCC
Q 046828 450 AVIQDICFSH-----YS---QWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 450 a~I~sIaFSp-----Dg---~~Las~S~dgTvhIw~i~~~ 481 (627)
..|.+|.|+- |+ -.|.+|++.|++.+|.|-+.
T Consensus 136 ~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~ 175 (395)
T PF08596_consen 136 SYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPS 175 (395)
T ss_dssp --EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-
T ss_pred cCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecC
Confidence 3488899983 43 47889999999999999863
No 354
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=80.95 E-value=0.86 Score=53.63 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=78.6
Q ss_pred cCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCC-EEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 359 SDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGN-NINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 359 ~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt-~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
.-+...|.|++++..+|.......+|.++|+-|.=+.||.++.|.|.-.. ..-+|+.. + .+.
T Consensus 1117 ~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~-s-----~~~----------- 1179 (1516)
T KOG1832|consen 1117 AVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS-S-----TGG----------- 1179 (1516)
T ss_pred EeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc-c-----ccC-----------
Confidence 34677899999999999999999999999999999999999888776554 45789875 2 111
Q ss_pred eEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 438 VHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
..+.+ ++ =.++.||...+.-++|+....+||||+.+..
T Consensus 1180 -~~Hsf-~e-----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1180 -PRHSF-DE-----DKAVKFSNSLQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred -ccccc-cc-----cceeehhhhHHHHHhcccccceEEEecccCc
Confidence 22222 22 2568899988888999999999999998654
No 355
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=80.89 E-value=95 Score=34.24 Aligned_cols=41 Identities=12% Similarity=0.068 Sum_probs=27.4
Q ss_pred CCcEEEEEECCCCceEEEEecCCeEEEEEecC---cEEEEEeCC
Q 046828 178 SPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP---RIVAVGLAA 218 (627)
Q Consensus 178 ~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~---~~LaV~~~~ 218 (627)
.++.|.-.|++||+.-..+.-..++--+.+|| .+|+-+-.+
T Consensus 166 p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEG 209 (386)
T PF14583_consen 166 PHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEG 209 (386)
T ss_dssp --EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S
T ss_pred CCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccC
Confidence 35888889999999766666677888899987 677776543
No 356
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=79.77 E-value=4.6 Score=30.26 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=24.4
Q ss_pred CeEEEEECCCC---CEEEEEeCCCCEEEEEeCC
Q 046828 387 PISALCFDRSG---TLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 387 ~Is~laFspdG---~lLaTaS~dGt~I~Vwdi~ 416 (627)
.|.+++|+|+. .+||.+=..|. |+|+|+.
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R 33 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTR 33 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCe-EEEEEcc
Confidence 58899999854 49999888887 8999986
No 357
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=79.74 E-value=4 Score=29.01 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=20.1
Q ss_pred cEEEEEEccCCCEEEEEeCC---CeEEEE
Q 046828 451 VIQDICFSHYSQWIAIVSSR---GTCHIF 476 (627)
Q Consensus 451 ~I~sIaFSpDg~~Las~S~d---gTvhIw 476 (627)
.....+|||||++|+-++.+ |..+||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 46788999999999987776 567776
No 358
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=79.40 E-value=14 Score=39.35 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=47.8
Q ss_pred CeEEEEECCCCCEEEEEeC---CCC-----EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeec-CCcCcEEEEEE
Q 046828 387 PISALCFDRSGTLLVTASI---HGN-----NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRG-MTSAVIQDICF 457 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~---dGt-----~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG-~t~a~I~sIaF 457 (627)
..+.+...|+|.+-++... .+. .-.||.+.|.. +..++..+ ... =+.|+|
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g-------------------~~~~l~~~~~~~--~NGla~ 170 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG-------------------GVVRLLDDDLTI--PNGLAF 170 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC-------------------CEEEeecCcEEe--cCceEE
Confidence 4567889999998887665 111 12455554321 22333333 222 368999
Q ss_pred ccCCCEEEEEeC-CCeEEEEEcCCCCCe
Q 046828 458 SHYSQWIAIVSS-RGTCHIFVLTPFGGE 484 (627)
Q Consensus 458 SpDg~~Las~S~-dgTvhIw~i~~~gg~ 484 (627)
|||++.|..+-. .+.||-|++.+..+.
T Consensus 171 SpDg~tly~aDT~~~~i~r~~~d~~~g~ 198 (307)
T COG3386 171 SPDGKTLYVADTPANRIHRYDLDPATGP 198 (307)
T ss_pred CCCCCEEEEEeCCCCeEEEEecCcccCc
Confidence 999987776655 489999998864443
No 359
>PRK13616 lipoprotein LpqB; Provisional
Probab=79.24 E-value=11 Score=43.76 Aligned_cols=99 Identities=15% Similarity=0.214 Sum_probs=61.0
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE---
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL--- 440 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l--- 440 (627)
.+.+.+.++..++... .....|..++|||||+.||... +|+ |.|=-+.+.. .|. ..+
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~-v~Va~Vvr~~----~G~-----------~~l~~~ 488 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGK-VYLAVVEQTE----DGQ-----------YALTNP 488 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCE-EEEEEEEeCC----CCc-----------eeeccc
Confidence 4566666666554332 3346799999999999999877 465 5553333211 121 122
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
.++..+... .+.+++|..|++. +++..++...+|.++-.|..
T Consensus 489 ~~l~~~l~~-~~~~l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 489 REVGPGLGD-TAVSLDWRTGDSL-VVGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred EEeecccCC-ccccceEecCCEE-EEEecCCCCceEEEecCCcc
Confidence 233333322 2588999999995 46677777788888765543
No 360
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=78.91 E-value=6.2 Score=29.55 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=25.2
Q ss_pred EEEEEEccCC---CEEEEEeCCCeEEEEEcCC
Q 046828 452 IQDICFSHYS---QWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 452 I~sIaFSpDg---~~Las~S~dgTvhIw~i~~ 480 (627)
|.++.|||+. ..|+.+=..|-|||+|+..
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 7899999854 4999999999999999983
No 361
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=78.66 E-value=1e+02 Score=33.37 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=27.0
Q ss_pred EEEEEeecCCcCcEEEEEEccCCC-EEEEEe-CCCeEEEEEcCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQ-WIAIVS-SRGTCHIFVLTP 480 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~-~Las~S-~dgTvhIw~i~~ 480 (627)
++.++.-. ..|.+|+.|.|.+ .|...+ .++++.|||...
T Consensus 281 rv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 281 RVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred EEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 55555322 2477999999998 443444 578999999875
No 362
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=78.11 E-value=4.9 Score=42.41 Aligned_cols=77 Identities=21% Similarity=0.292 Sum_probs=53.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE---eecCC-----------cCc
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL---HRGMT-----------SAV 451 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l---~rG~t-----------~a~ 451 (627)
.-|+++-|+..|.+||||...|+ +.+|.-.... | +-|++ +.+|. ..+
T Consensus 27 d~ItaVefd~tg~YlatGDkgGR-Vvlfer~~s~-----~-------------ceykf~teFQshe~EFDYLkSleieEK 87 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGR-VVLFEREKSY-----G-------------CEYKFFTEFQSHELEFDYLKSLEIEEK 87 (460)
T ss_pred ceeeEEEeccccceEeecCCCce-EEEeeccccc-----c-------------cchhhhhhhcccccchhhhhhccHHHH
Confidence 46899999999999999999998 5777643221 1 11111 12222 124
Q ss_pred EEEEEEccCCC--EEEEEeCCCeEEEEEcCCC
Q 046828 452 IQDICFSHYSQ--WIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 452 I~sIaFSpDg~--~Las~S~dgTvhIw~i~~~ 481 (627)
|..|.|-.++. .+..++.|.||+||.+-..
T Consensus 88 in~I~w~~~t~r~hFLlstNdktiKlWKiyek 119 (460)
T COG5170 88 INAIEWFDDTGRNHFLLSTNDKTIKLWKIYEK 119 (460)
T ss_pred hhheeeecCCCcceEEEecCCceeeeeeeecc
Confidence 88888877654 5667789999999999765
No 363
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.68 E-value=26 Score=38.34 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=41.2
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC----cEEEEEeCCeEEEEeCC
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP----RIVAVGLAAQIYCFDAL 226 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~----~~LaV~~~~~I~i~D~~ 226 (627)
+.+++||..+.+.+.++.+..+|++|.-.. .+|++=.+++++||.-+
T Consensus 411 n~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 411 NELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred ceeEEeccchhheeeecccCcceeecceeecCCcchhhheecceEEEEecC
Confidence 679999999999999999999999988754 58888889999998654
No 364
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=77.38 E-value=17 Score=39.67 Aligned_cols=101 Identities=12% Similarity=0.173 Sum_probs=58.9
Q ss_pred CCCCCeEEEEECCCCeEEEE-eccCCCCeEEEEECCCCCEEEEEeCCC----------CEEEEEeCCCCCCCCCCCCCcc
Q 046828 361 TDIAGMVVVKDIVSRSVISQ-FRAHTSPISALCFDRSGTLLVTASIHG----------NNINIFRIMPSSSKGRSGSASQ 429 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~-~~aH~~~Is~laFspdG~lLaTaS~dG----------t~I~Vwdi~p~~~~~~~g~~~~ 429 (627)
|++.-.|+|+|+.+++.+.. |.. . .-..++|.+||+.|.-...+. ..|..|++. +..
T Consensus 146 G~e~~~l~v~Dl~tg~~l~d~i~~-~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~g---------t~~- 213 (414)
T PF02897_consen 146 GSEWYTLRVFDLETGKFLPDGIEN-P-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLG---------TPQ- 213 (414)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEEE-E-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETT---------S-G-
T ss_pred CCceEEEEEEECCCCcCcCCcccc-c-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECC---------CCh-
Confidence 45667899999999977653 232 1 123399999998876665433 224455543 110
Q ss_pred ccCCCCceeEEEEEeecCCcCc-EEEEEEccCCCEEEEEeCCCe--EEEEEcCCC
Q 046828 430 TYDWTSSHVHLYKLHRGMTSAV-IQDICFSHYSQWIAIVSSRGT--CHIFVLTPF 481 (627)
Q Consensus 430 ~~~~~~~~~~l~~l~rG~t~a~-I~sIaFSpDg~~Las~S~dgT--vhIw~i~~~ 481 (627)
..-..++ ++..... ..++..|+|++||++.+.+++ -.+|-+...
T Consensus 214 -----~~d~lvf---e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 214 -----SEDELVF---EEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp -----GG-EEEE---C-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred -----HhCeeEE---eecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 0102344 3333334 778999999999998665554 355554443
No 365
>PRK02888 nitrous-oxide reductase; Validated
Probab=77.21 E-value=24 Score=41.08 Aligned_cols=106 Identities=7% Similarity=0.029 Sum_probs=68.5
Q ss_pred CCeEEEEECCC-----CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 364 AGMVVVKDIVS-----RSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 364 dG~V~IwD~~s-----~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
++.|.|.|..+ .+.+..+.- ......++++|||++++.+..-...+-|+|+...... -.+. .++...
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~-~~~~----~~~~~~-- 366 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL-FDGK----IKPRDA-- 366 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh-hhcc----CCccce--
Confidence 46799999998 455555553 2345678999999999998875555899998621100 0000 011111
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
...+..-|..+ ...+|.++|....+--.|..|-.|++..
T Consensus 367 vvaevevGlGP---LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 367 VVAEPELGLGP---LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEeeccCCCc---ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 12222224432 4578999999888888899999999876
No 366
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=76.81 E-value=7.8 Score=46.34 Aligned_cols=92 Identities=13% Similarity=0.181 Sum_probs=58.7
Q ss_pred CCeEEEEECCCC-eEEEEec----cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 364 AGMVVVKDIVSR-SVISQFR----AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 364 dG~V~IwD~~s~-~~l~~~~----aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
+..+-.||.+-. ..+..-. ......+|++-+.+| .||.||.+|. ||+||-. |.
T Consensus 551 ~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~-IRLyd~~--------g~------------ 608 (794)
T PF08553_consen 551 DNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGD-IRLYDRL--------GK------------ 608 (794)
T ss_pred CCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCc-EEeeccc--------ch------------
Confidence 344556776542 1121111 234568999999999 6889999998 8999842 11
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
+-..+..|.- ..|..|.-+.||+||++.+. .-+.|++..
T Consensus 609 ~AKT~lp~lG-~pI~~iDvt~DGkwilaTc~-tyLlLi~t~ 647 (794)
T PF08553_consen 609 RAKTALPGLG-DPIIGIDVTADGKWILATCK-TYLLLIDTL 647 (794)
T ss_pred hhhhcCCCCC-CCeeEEEecCCCcEEEEeec-ceEEEEEEe
Confidence 1111223332 35999999999999987754 455666654
No 367
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.65 E-value=11 Score=44.77 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=74.0
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCC-eEEEEECCCCCEEEEEeCCCC----EEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSP-ISALCFDRSGTLLVTASIHGN----NINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~-Is~laFspdG~lLaTaS~dGt----~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
+..+|.|.+.+-. .+.+..|++|... |..|-...+-.+|++-.+|++ .++||++.+.. +. .
T Consensus 41 gt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~-----~n--------~ 106 (933)
T KOG2114|consen 41 GTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD-----KN--------N 106 (933)
T ss_pred eeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC-----CC--------C
Confidence 4567777777643 2445889999888 666665555579999999887 79999987432 10 1
Q ss_pred ceeEEEEE-----eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 436 SHVHLYKL-----HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 436 ~~~~l~~l-----~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
++..+++. .-+.....+.+|+.|.|-+.+|+|=.+|+|..+.-+.
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi 156 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDI 156 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcc
Confidence 11233332 2232234488999999999999999999999987654
No 368
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=74.45 E-value=9.2 Score=27.07 Aligned_cols=31 Identities=10% Similarity=0.214 Sum_probs=20.4
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCC--CEEEEE
Q 046828 383 AHTSPISALCFDRSGTLLVTASIHG--NNINIF 413 (627)
Q Consensus 383 aH~~~Is~laFspdG~lLaTaS~dG--t~I~Vw 413 (627)
........-+|+|||+.|+-++... ....||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445667889999999998877664 224555
No 369
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=73.99 E-value=7.5 Score=39.48 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=62.4
Q ss_pred CCCCCeEEEEECCCCeEEEEecc-CCCCeEE-EEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRA-HTSPISA-LCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~a-H~~~Is~-laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
+..+|.|.+|...-...+..+.. -..+|.+ |.--.++.+..++..+|. ||-|.+.|...
T Consensus 76 G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~k~------------------ 136 (238)
T KOG2444|consen 76 GTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPNKV------------------ 136 (238)
T ss_pred ecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccCce------------------
Confidence 46789999987762211111111 1123332 333345668889999987 89999986532
Q ss_pred EEEEEeecCCc-CcEEEEEEccCCCEEEEE--eCCCeEEEEEcCCCCCe
Q 046828 439 HLYKLHRGMTS-AVIQDICFSHYSQWIAIV--SSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 439 ~l~~l~rG~t~-a~I~sIaFSpDg~~Las~--S~dgTvhIw~i~~~gg~ 484 (627)
+ .. +|+.. ..+....-+..+++|+++ |.+.+++.|++.+....
T Consensus 137 -~-g~-~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~ 182 (238)
T KOG2444|consen 137 -L-GY-VGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDE 182 (238)
T ss_pred -e-ee-eccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhcc
Confidence 1 11 33333 456666667777888888 88888888888776433
No 370
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=73.22 E-value=3.6 Score=47.61 Aligned_cols=96 Identities=15% Similarity=0.266 Sum_probs=66.9
Q ss_pred CCCCCCeEEEEECCCCeEEEEe--ccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 360 DTDIAGMVVVKDIVSRSVISQF--RAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~--~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
+.+.+|.|.||=+-++.-...+ ....+.|.+++|+.||+.++.+-+||.+ .|=.+. |.
T Consensus 88 tSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav-IVGsvd--------GN----------- 147 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV-IVGSVD--------GN----------- 147 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE-EEEeec--------cc-----------
Confidence 4578999999988766321111 1235679999999999999999999985 343332 21
Q ss_pred eEEE-EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 438 VHLY-KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 438 ~~l~-~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
+++ +-..|.. ...+-||+|.+.+..+-..|.+|||+..
T Consensus 148 -RIwgKeLkg~~---l~hv~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 148 -RIWGKELKGQL---LAHVLWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred -eecchhcchhe---ccceeecccHHHHHhhhcCCcEEEeccc
Confidence 222 1112322 3467899999999999999999999864
No 371
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=72.59 E-value=24 Score=39.27 Aligned_cols=39 Identities=13% Similarity=0.257 Sum_probs=32.6
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 377 VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 377 ~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
....|....-.+.+|+.+|+|++.|+.+.-|+ |-++|+.
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGR-V~LiD~~ 337 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGR-VLLIDVA 337 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCc-EEEEECC
Confidence 44556666667899999999999999998998 7899986
No 372
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=72.58 E-value=21 Score=38.44 Aligned_cols=115 Identities=14% Similarity=0.154 Sum_probs=71.5
Q ss_pred CCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCC--------cc-----c--cC--C-
Q 046828 372 IVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSA--------SQ-----T--YD--W- 433 (627)
Q Consensus 372 ~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~--------~~-----~--~~--~- 433 (627)
.+....+....+|..+|.++-|+-.-+.+++.+.|.. -.|-....... -|.- .+ . ++ +
T Consensus 101 fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~--~~~hc~e~~~~--lg~Y~~~~~~t~~~~d~~~~fvGd~~gq 176 (404)
T KOG1409|consen 101 FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQ--FAWHCTESGNR--LGGYNFETPASALQFDALYAFVGDHSGQ 176 (404)
T ss_pred hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccc--eEEEeeccCCc--ccceEeeccCCCCceeeEEEEecccccc
Confidence 3444556667788999999999988888888888754 24543211100 0000 00 0 00 0
Q ss_pred -------CCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCee-ecccccc
Q 046828 434 -------TSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGET-VLQIQNS 492 (627)
Q Consensus 434 -------~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~-~~~~h~s 492 (627)
......++++ .|++. .|.+++|.+..+.|.++..|..+.+|+|--..+.. .+..|+.
T Consensus 177 vt~lr~~~~~~~~i~~~-~~h~~-~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~ 241 (404)
T KOG1409|consen 177 ITMLKLEQNGCQLITTF-NGHTG-EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND 241 (404)
T ss_pred eEEEEEeecCCceEEEE-cCccc-ceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchh
Confidence 0001123333 56654 49999999999999999999999999997665554 4555643
No 373
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=72.09 E-value=1.1e+02 Score=33.76 Aligned_cols=89 Identities=13% Similarity=0.176 Sum_probs=50.3
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCC----------------c--------cccCCCCceeEEEE
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSA----------------S--------QTYDWTSSHVHLYK 442 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~----------------~--------~~~~~~~~~~~l~~ 442 (627)
.|..+.|.++-.-||.+-..|. +-||....+...+..... . .+.........++-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~Ge-Vv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGE-VVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS--EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCc-EEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 4889999999999999999999 568866433211000000 0 00000011111221
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
++ - ..+.|..++.| |=-++|++..+|++-|.|+.
T Consensus 82 ~~-~-~~g~vtal~~S-~iGFvaigy~~G~l~viD~R 115 (395)
T PF08596_consen 82 LD-A-KQGPVTALKNS-DIGFVAIGYESGSLVVIDLR 115 (395)
T ss_dssp E-----S-SEEEEEE--BTSEEEEEETTSEEEEEETT
T ss_pred ee-c-cCCcEeEEecC-CCcEEEEEecCCcEEEEECC
Confidence 11 1 13469999998 55599999999999999993
No 374
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.73 E-value=24 Score=39.99 Aligned_cols=103 Identities=14% Similarity=0.178 Sum_probs=61.5
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEE-----EEEeCCCCCCCCCCCCCccccCCC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNI-----NIFRIMPSSSKGRSGSASQTYDWT 434 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I-----~Vwdi~p~~~~~~~g~~~~~~~~~ 434 (627)
++.....+.=-|++.|+.+...+-|.. |+-+.|.|+++.-=--+ .+|.| +||++.|.. .|.. .
T Consensus 351 ~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~-e~TlvGLs~n~vfriDpRv----~~~~------k 418 (644)
T KOG2395|consen 351 DGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTS-EQTLVGLSDNSVFRIDPRV----QGKN------K 418 (644)
T ss_pred CCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccc-cccEEeecCCceEEecccc----cCcc------e
Confidence 344556677789999999998888776 88888888854311111 11221 456665543 2210 0
Q ss_pred CceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 435 SSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 435 ~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
-....-.++.++. ..+|++=..+| +||++|.+|.|++|+-
T Consensus 419 l~~~q~kqy~~k~---nFsc~aTT~sG-~IvvgS~~GdIRLYdr 458 (644)
T KOG2395|consen 419 LAVVQSKQYSTKN---NFSCFATTESG-YIVVGSLKGDIRLYDR 458 (644)
T ss_pred eeeeecccccccc---ccceeeecCCc-eEEEeecCCcEEeehh
Confidence 0000111122221 36777777776 8899999999999985
No 375
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=69.42 E-value=1.3e+02 Score=34.00 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=26.3
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCeE--EEEECCCCCEEE
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPIS--ALCFDRSGTLLV 401 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~Is--~laFspdG~lLa 401 (627)
++.+|.|..+|..+++.+-.++-. .++. -+.|..+|++.+
T Consensus 412 g~~dG~l~ald~~tG~~lW~~~~~-~~~~a~P~~~~~~g~~yv 453 (488)
T cd00216 412 GAADGYFRAFDATTGKELWKFRTP-SGIQATPMTYEVNGKQYV 453 (488)
T ss_pred ECCCCeEEEEECCCCceeeEEECC-CCceEcCEEEEeCCEEEE
Confidence 357899999999999988877642 2222 234555675443
No 376
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=69.36 E-value=58 Score=36.43 Aligned_cols=105 Identities=11% Similarity=0.213 Sum_probs=52.7
Q ss_pred CCCCeEEEEECCCCeEEEEeccCC-C-CeEEEEECCC--CCEEEEEe-CCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHT-S-PISALCFDRS--GTLLVTAS-IHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~-~-~Is~laFspd--G~lLaTaS-~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
.....+.+||+.+.+.+.+|.--. . -...|.|-++ -..=.++. -.+++.++|... .| .|...
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~-------~g------~W~a~ 285 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD-------DG------EWAAE 285 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E-------TT------EEEEE
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcC-------CC------Ceeee
Confidence 355789999999999988887332 1 2345666544 44433333 333444455432 22 23332
Q ss_pred eeEEEEEee---------------cCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCC
Q 046828 437 HVHLYKLHR---------------GMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPF 481 (627)
Q Consensus 437 ~~~l~~l~r---------------G~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~ 481 (627)
++.++-. |..++-|++|..|.|.+||.++. .+|.|+.|||...
T Consensus 286 --kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 286 --KVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp --EEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred --EEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 2222211 11134599999999999999877 4999999999864
No 377
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=68.54 E-value=29 Score=37.89 Aligned_cols=63 Identities=13% Similarity=0.189 Sum_probs=41.2
Q ss_pred CeEEEEECCCCCEEEEE-eCCCC---EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCC
Q 046828 387 PISALCFDRSGTLLVTA-SIHGN---NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQ 462 (627)
Q Consensus 387 ~Is~laFspdG~lLaTa-S~dGt---~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~ 462 (627)
.+...++||||++||-+ +..|. .++|+|+. +|. .+-....+ ..-..++|.+|++
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~-------tg~------------~l~d~i~~---~~~~~~~W~~d~~ 182 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLE-------TGK------------FLPDGIEN---PKFSSVSWSDDGK 182 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETT-------TTE------------EEEEEEEE---EESEEEEECTTSS
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECC-------CCc------------CcCCcccc---cccceEEEeCCCC
Confidence 34568999999999866 55553 48999996 342 22222121 2223499999999
Q ss_pred EEEEEeCCC
Q 046828 463 WIAIVSSRG 471 (627)
Q Consensus 463 ~Las~S~dg 471 (627)
.|.....+.
T Consensus 183 ~~~y~~~~~ 191 (414)
T PF02897_consen 183 GFFYTRFDE 191 (414)
T ss_dssp EEEEEECST
T ss_pred EEEEEEeCc
Confidence 888776554
No 378
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=67.86 E-value=85 Score=34.28 Aligned_cols=94 Identities=11% Similarity=0.158 Sum_probs=62.9
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.++.|.+.|..+.+.+..+..-..| ..++|+|+|..+..+......|-++|.. .. .+.+
T Consensus 138 ~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~-~~-------------------~v~~ 196 (381)
T COG3391 138 GNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS-GN-------------------SVVR 196 (381)
T ss_pred CCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCC-Cc-------------------ceec
Confidence 4688999999999888876654556 8899999999777666443447888864 10 1221
Q ss_pred ------EeecCCcCcEEEEEEccCCCEEEEEeCC---CeEEEEEcCC
Q 046828 443 ------LHRGMTSAVIQDICFSHYSQWIAIVSSR---GTCHIFVLTP 480 (627)
Q Consensus 443 ------l~rG~t~a~I~sIaFSpDg~~Las~S~d---gTvhIw~i~~ 480 (627)
...+. .-..+++++|++++.+.-.. +++-+.+...
T Consensus 197 ~~~~~~~~~~~---~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~ 240 (381)
T COG3391 197 GSVGSLVGVGT---GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT 240 (381)
T ss_pred cccccccccCC---CCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence 11121 14678999999977665554 3666666544
No 379
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=67.44 E-value=7.3 Score=46.38 Aligned_cols=88 Identities=22% Similarity=0.215 Sum_probs=63.9
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEE
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDI 455 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sI 455 (627)
+....|+.|+...+|++|+-+...|+.|+-.|. |++|++. +|.. -.-..+|.. .|+-|
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Ge-ik~~nv~-------sG~~-------------e~s~ncH~S-avT~v 1149 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGE-IKIFNVS-------SGSM-------------EESVNCHQS-AVTLV 1149 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccce-EEEEEcc-------Cccc-------------ccccccccc-ccccc
Confidence 467789999999999999999999999999998 8999986 3321 001123333 37777
Q ss_pred EEccCCCEEEEEeCCC--eEEEEEcCCCCCee
Q 046828 456 CFSHYSQWIAIVSSRG--TCHIFVLTPFGGET 485 (627)
Q Consensus 456 aFSpDg~~Las~S~dg--TvhIw~i~~~gg~~ 485 (627)
.=|-||..+.+++.-. -..+|++...++..
T Consensus 1150 ePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~ 1181 (1516)
T KOG1832|consen 1150 EPSVDGSTQLTSSSSSSPLSALWDASSTGGPR 1181 (1516)
T ss_pred cccCCcceeeeeccccCchHHHhccccccCcc
Confidence 7788888777655433 46789887755543
No 380
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=65.19 E-value=58 Score=31.37 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=25.5
Q ss_pred cEEEEEEccCC------CEEEEEeCCCeEEEEEcCC
Q 046828 451 VIQDICFSHYS------QWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 451 ~I~sIaFSpDg------~~Las~S~dgTvhIw~i~~ 480 (627)
.|..++|||-| -.||+-+.+|.+.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 58999999944 3899999999999998654
No 381
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.74 E-value=79 Score=37.96 Aligned_cols=99 Identities=16% Similarity=0.202 Sum_probs=64.9
Q ss_pred eEEEEECCCC------eEE--EEecc-----CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccC
Q 046828 366 MVVVKDIVSR------SVI--SQFRA-----HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYD 432 (627)
Q Consensus 366 ~V~IwD~~s~------~~l--~~~~a-----H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~ 432 (627)
.|+|||+... .++ ..+.. .+.|+++|+.+.+=+.+|.|=.+|.++ .+.=.+... +|.
T Consensus 93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~-~~~GDi~RD---rgs------ 162 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVI-CYKGDILRD---RGS------ 162 (933)
T ss_pred EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEE-EEcCcchhc---ccc------
Confidence 7999998643 222 11222 357899999999999999999999854 443221111 221
Q ss_pred CCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 433 WTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 433 ~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
+..-..+|.. .|+.++|-.|++-++-+.....|++|.+.-.+
T Consensus 163 ------r~~~~~~~~~--pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 163 ------RQDYSHRGKE--PITGLALRSDGKSVLFVATTEQVMLYSLSGRT 204 (933)
T ss_pred ------ceeeeccCCC--CceeeEEecCCceeEEEEecceeEEEEecCCC
Confidence 2222335543 49999999999985444456679999998444
No 382
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=63.41 E-value=91 Score=32.23 Aligned_cols=81 Identities=14% Similarity=0.212 Sum_probs=45.1
Q ss_pred EeccCCCCeEEEEECCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEc
Q 046828 380 QFRAHTSPISALCFDRSGT-LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFS 458 (627)
Q Consensus 380 ~~~aH~~~Is~laFspdG~-lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFS 458 (627)
.+.+-...++.|+|+|+.. ++|.....+. |...+. .|. ..+.+.+ .|. ...-+|++-
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~-i~els~--------~G~----------vlr~i~l-~g~--~D~EgI~y~ 73 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGE-IYELSL--------DGK----------VLRRIPL-DGF--GDYEGITYL 73 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTE-EEEEET--------T------------EEEEEE--SS---SSEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCE-EEEEcC--------CCC----------EEEEEeC-CCC--CCceeEEEE
Confidence 3444455699999999755 5555555554 444443 231 1122333 343 357899999
Q ss_pred cCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 459 HYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 459 pDg~~Las~S~dgTvhIw~i~~~g 482 (627)
-+++++++.-.++++.++.+...+
T Consensus 74 g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 74 GNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp STTEEEEEETTTTEEEEEEE----
T ss_pred CCCEEEEEEcCCCcEEEEEEeccc
Confidence 888777766569999999996554
No 383
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=62.31 E-value=3.4e+02 Score=32.50 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=48.1
Q ss_pred CCeEEEEEC--CCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCC--
Q 046828 386 SPISALCFD--RSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYS-- 461 (627)
Q Consensus 386 ~~Is~laFs--pdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg-- 461 (627)
..+..|++. ...++||.++.. +.|.||-....... . .+..+.. ..+.|.+|+|-++.
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs-~~VTVFaf~l~~~r---~------------~~~~s~~---~~hNIP~VSFl~~~~d 224 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNS-QEVTVFAFALVDER---F------------YHVPSHQ---HSHNIPNVSFLDDDLD 224 (717)
T ss_pred CceeEEEEEecCcceEEEEecCC-ceEEEEEEeccccc---c------------ccccccc---cccCCCeeEeecCCCC
Confidence 357788887 666777666555 55889876421110 0 0100111 22359999998755
Q ss_pred -C---EEEEEeCCCeEEEEEcC
Q 046828 462 -Q---WIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 462 -~---~Las~S~dgTvhIw~i~ 479 (627)
. +|++++-.|.+-+|++.
T Consensus 225 ~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 225 PNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred CccceEEEEEeccCcEEEEEEE
Confidence 2 99999999999999883
No 384
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=61.42 E-value=37 Score=41.97 Aligned_cols=67 Identities=15% Similarity=0.166 Sum_probs=51.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEE
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIA 465 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~La 465 (627)
..|.++.|--++.-|..+..+|.+|-+ |.. . ...+. -|.....|.+++||||.+++|
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilv-d~e--t-------------------~~~ei-vg~vd~GI~aaswS~Dee~l~ 125 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILV-DPE--T-------------------LELEI-VGNVDNGISAASWSPDEELLA 125 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEE-ccc--c-------------------cceee-eeeccCceEEEeecCCCcEEE
Confidence 468889999999999999999996544 532 1 12222 244444599999999999999
Q ss_pred EEeCCCeEEE
Q 046828 466 IVSSRGTCHI 475 (627)
Q Consensus 466 s~S~dgTvhI 475 (627)
..+.++|+-+
T Consensus 126 liT~~~tll~ 135 (1265)
T KOG1920|consen 126 LITGRQTLLF 135 (1265)
T ss_pred EEeCCcEEEE
Confidence 9999999865
No 385
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=60.39 E-value=1.3e+02 Score=31.68 Aligned_cols=43 Identities=9% Similarity=-0.143 Sum_probs=34.2
Q ss_pred EEEecCCeEEEEEecCcEEEEEeCCeEEEEeCCCCceeEEEEc
Q 046828 194 HVLRFRSTVYMVRCSPRIVAVGLAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 194 ~tL~f~s~V~sV~~s~~~LaV~~~~~I~i~D~~t~e~~~tl~~ 236 (627)
..+.+.....++++....|.+-...-|.|+++.+++.++++..
T Consensus 238 ~~l~w~~~p~~~~~~~pyll~~~~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 238 PILHWEFMPESFAYHSPYLLAFHDNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred eEEEcCCcccEEEEECCEEEEEcCCcEEEEECCCCceEEEEec
Confidence 4677888778888877666666677799999999998888854
No 386
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=59.41 E-value=75 Score=34.98 Aligned_cols=31 Identities=10% Similarity=0.133 Sum_probs=22.5
Q ss_pred cCcceEEEEcCCCcEEEEEeeccCCCCcccc
Q 046828 585 NDLEHVLVYTPSGHVVQYKLLSSIGGESSEL 615 (627)
Q Consensus 585 ~~~~~l~v~~~~G~l~~y~l~p~~~~~~~~~ 615 (627)
.....|||.-.+--+..|..+|..+-....+
T Consensus 217 De~g~LYvgEE~~GIW~y~Aep~~~~~~~~v 247 (381)
T PF02333_consen 217 DETGRLYVGEEDVGIWRYDAEPEGGNDRTLV 247 (381)
T ss_dssp TTTTEEEEEETTTEEEEEESSCCC-S--EEE
T ss_pred cccCCEEEecCccEEEEEecCCCCCCcceee
Confidence 4455899999999999999999887654433
No 387
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=59.03 E-value=61 Score=34.54 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=39.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEE
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIA 465 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~La 465 (627)
..+..+..++||+++|.+ ..|..+.-||- |. ..++.+. |. +..+|++|.|+||+...+
T Consensus 145 gs~~~~~r~~dG~~vavs-~~G~~~~s~~~---------G~---------~~w~~~~--r~-~~~riq~~gf~~~~~lw~ 202 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVS-SRGNFYSSWDP---------GQ---------TTWQPHN--RN-SSRRIQSMGFSPDGNLWM 202 (302)
T ss_dssp --EEEEEE-TTS-EEEEE-TTSSEEEEE-T---------T----------SS-EEEE-----SSS-EEEEEE-TTS-EEE
T ss_pred ceeEeEEECCCCcEEEEE-CcccEEEEecC---------CC---------ccceEEc--cC-ccceehhceecCCCCEEE
Confidence 568888999999988876 56776667762 11 0134443 22 345699999999987766
Q ss_pred EEeCCCeEEEEE
Q 046828 466 IVSSRGTCHIFV 477 (627)
Q Consensus 466 s~S~dgTvhIw~ 477 (627)
++ ..|-++.=+
T Consensus 203 ~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 203 LA-RGGQIQFSD 213 (302)
T ss_dssp EE-TTTEEEEEE
T ss_pred Ee-CCcEEEEcc
Confidence 54 666665444
No 388
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=57.59 E-value=2.2e+02 Score=33.58 Aligned_cols=64 Identities=20% Similarity=0.358 Sum_probs=38.5
Q ss_pred CCCCCcEEE---EEeeccCCC-----CCCCCeEEEEec-cCcEEEEecCCCCCceEEeee--cCCceEEEEEeeCCC
Q 046828 59 HELKDQVLW---SSFDKLELS-----PSSFKHVLLLGY-SNGFQVLDVEDATNVSELVSR--RDDPVTFLQMQPLPA 124 (627)
Q Consensus 59 ~~~~d~V~w---a~Fd~l~~~-----~~~~~~vl~~Gy-~~G~qVWdv~~~~~~~ells~--~dG~V~~v~~lp~p~ 124 (627)
+..+..|.| +.|++--.+ .+..+++.++.. ...+.|||...+. .|.-.. .+++|.-+.+..+|.
T Consensus 11 ~~~~~~~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~--lE~~~~f~~~~~I~dLDWtst~d 85 (631)
T PF12234_consen 11 DTESNKIEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV--LEYEESFSEDDPIRDLDWTSTPD 85 (631)
T ss_pred cCCCCeEEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcE--EEEeeeecCCCceeeceeeecCC
Confidence 345566777 555542111 123456655544 4469999998754 333333 378888888888774
No 389
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.44 E-value=1.6e+02 Score=33.74 Aligned_cols=88 Identities=15% Similarity=0.267 Sum_probs=52.3
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc-eeEE----EEEeecCCcCcEEEEEEccCC
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS-HVHL----YKLHRGMTSAVIQDICFSHYS 461 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~-~~~l----~~l~rG~t~a~I~sIaFSpDg 461 (627)
.|..+..|+.|..+|-++.+|- .|-.+ |..= |+.+- =.|.... ..+. -+++.-.+.-.+...+|.|++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi--~vMeL-p~rw-G~~s~---~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S 177 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGL--MVMEL-PKRW-GKNSE---FEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSS 177 (741)
T ss_pred EEEEEEecCCCceEEEecCCee--EEEEc-hhhc-Cccce---ecCCCceEEEEeecccceeeccCCceeeeeccccCCc
Confidence 3778889999999999999994 34444 2110 00000 0011000 0011 111111222347788999987
Q ss_pred ---CEEEEEeCCCeEEEEEcCCC
Q 046828 462 ---QWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 462 ---~~Las~S~dgTvhIw~i~~~ 481 (627)
..|.+-++|.+++||++...
T Consensus 178 ~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 178 ILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred cCCceEEEEecCcEEEEEecCCc
Confidence 68888999999999999764
No 390
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=57.26 E-value=1.3e+02 Score=30.84 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=49.6
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI 466 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las 466 (627)
.+..-+|+++|.+.+....+.. .+++.-.. .|.. ...++........|.++.+||||..+|.
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~-~~~~~~~~------~g~~-----------~~~~v~~~~~~~~I~~l~vSpDG~RvA~ 128 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGG-VRVVRDSA------SGTG-----------EPVEVDWPGLRGRITALRVSPDGTRVAV 128 (253)
T ss_pred ccccccccCCCCEEEEEcCCCc-eEEEEecC------CCcc-----------eeEEecccccCCceEEEEECCCCcEEEE
Confidence 6777899999988887776654 56664111 1210 1122211111116999999999999999
Q ss_pred Ee---CCCeEEEEEcCCCC
Q 046828 467 VS---SRGTCHIFVLTPFG 482 (627)
Q Consensus 467 ~S---~dgTvhIw~i~~~g 482 (627)
.. .++.+.|=.|...+
T Consensus 129 v~~~~~~~~v~va~V~r~~ 147 (253)
T PF10647_consen 129 VVEDGGGGRVYVAGVVRDG 147 (253)
T ss_pred EEecCCCCeEEEEEEEeCC
Confidence 87 35778877776543
No 391
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=55.81 E-value=21 Score=41.66 Aligned_cols=80 Identities=16% Similarity=0.259 Sum_probs=58.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCE
Q 046828 384 HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQW 463 (627)
Q Consensus 384 H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~ 463 (627)
|...|.--+|+-.+++|+.|+.-|- +.+|.-. .|. .+.++. .|. ...+..++.|++..+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~-lyl~~R~-------~~~-----------~~~~~~-~~~-~~~~~~~~vs~~e~l 90 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGS-VYLYNRH-------TGE-----------MRKLKN-EGA-TGITCVRSVSSVEYL 90 (726)
T ss_pred CcceEEEEEeecCCceEEEecccce-EEEEecC-------chh-----------hhcccc-cCc-cceEEEEEecchhHh
Confidence 3455777789999999999999997 6888743 121 122322 232 233777899999999
Q ss_pred EEEEeCCCeEEEEEcCCCCCee
Q 046828 464 IAIVSSRGTCHIFVLTPFGGET 485 (627)
Q Consensus 464 Las~S~dgTvhIw~i~~~gg~~ 485 (627)
+|.++..|-|-||.++. ++++
T Consensus 91 vAagt~~g~V~v~ql~~-~~p~ 111 (726)
T KOG3621|consen 91 VAAGTASGRVSVFQLNK-ELPR 111 (726)
T ss_pred hhhhcCCceEEeehhhc-cCCC
Confidence 99999999999999987 4443
No 392
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=55.81 E-value=26 Score=40.21 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=23.5
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEE
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIV 467 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~ 467 (627)
.+.++..+...+.|..++|+||++.|.+.
T Consensus 491 ~~~rf~~~P~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 491 ELKRFLVGPNGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred ceeeeccCCCCcccccceECCCCCEEEEE
Confidence 45666677777889999999999998764
No 393
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=55.75 E-value=2.9e+02 Score=29.62 Aligned_cols=51 Identities=14% Similarity=0.140 Sum_probs=39.2
Q ss_pred CcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCCeEEEEeCCCCc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAAQIYCFDALTLE 229 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~~I~i~D~~t~e 229 (627)
...+-+||+.+++..........+....++| +.||...+..|+++++.+++
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~ 74 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ 74 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSE
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCC
Confidence 3678999999987654333355788888987 88999999999999998874
No 394
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=55.64 E-value=56 Score=34.14 Aligned_cols=57 Identities=7% Similarity=0.139 Sum_probs=43.1
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecCcEEEEE-eCCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVG-LAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~~~LaV~-~~~~I~i~D~~t~e~~~tl~~ 236 (627)
++..+||..+-+.+.++.++..=+.+....+.|+.+ ..++|+.+|..+++...++.-
T Consensus 110 ~~~f~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 110 GTGFVYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp SEEEEEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred CeEEEEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEE
Confidence 779999999999999999998888888777656555 567999999999998877753
No 395
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=54.08 E-value=2.9e+02 Score=29.07 Aligned_cols=57 Identities=9% Similarity=0.110 Sum_probs=37.4
Q ss_pred cEEEEEECCCCceEEEEecCCeE-------EEEEec--C-----cEEEEEeC--CeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTV-------YMVRCS--P-----RIVAVGLA--AQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V-------~sV~~s--~-----~~LaV~~~--~~I~i~D~~t~e~~~tl~~ 236 (627)
-+|.+||++|++.++++.|+..+ .++++- + .++-++.. ..|.+||+.+++..+.+..
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC
Confidence 46888999999999999987544 344442 2 23434433 3699999999986555544
No 396
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=53.78 E-value=3.6e+02 Score=30.16 Aligned_cols=59 Identities=14% Similarity=0.274 Sum_probs=35.0
Q ss_pred CCcEEEEEECCC--Cc----------eEEEEecCCeEEEEEec-------CcEEEE-EeCCeEEEEeCCCCceeEEEEc
Q 046828 178 SPTAVRFYSLRS--HN----------YVHVLRFRSTVYMVRCS-------PRIVAV-GLAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 178 ~~~tV~lwdl~t--~~----------~V~tL~f~s~V~sV~~s-------~~~LaV-~~~~~I~i~D~~t~e~~~tl~~ 236 (627)
.|+++.||++.. |. .+.+..|....+++.+- +..|.| ++|+++.+|+-...-..+.+.+
T Consensus 95 hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~ 173 (418)
T PF14727_consen 95 HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD 173 (418)
T ss_pred cCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC
Confidence 368899998732 11 12233355556666652 355555 5789999999876543334433
No 397
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=53.44 E-value=4.9e+02 Score=31.55 Aligned_cols=54 Identities=20% Similarity=0.249 Sum_probs=36.8
Q ss_pred CCCCeEEEEECCCCeEEEEecc-CC--------CCeEEEEECC-CCC---EEEEEeCCCCEEEEEeCC
Q 046828 362 DIAGMVVVKDIVSRSVISQFRA-HT--------SPISALCFDR-SGT---LLVTASIHGNNINIFRIM 416 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~a-H~--------~~Is~laFsp-dG~---lLaTaS~dGt~I~Vwdi~ 416 (627)
...+.|.-.|.++++..-+|+. |. .+-.-+.+.- +|+ .|+.++.+|. +.++|-.
T Consensus 411 ~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~-~~vlDr~ 477 (764)
T TIGR03074 411 KYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQ-IYVLDRR 477 (764)
T ss_pred cccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCE-EEEEECC
Confidence 3567788899999998888875 31 1122233433 775 7888999997 7888865
No 398
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=53.08 E-value=1.9e+02 Score=27.22 Aligned_cols=57 Identities=19% Similarity=0.178 Sum_probs=44.7
Q ss_pred CcEEEEEECCCCceEEEEecCCeEEEEEec------CcEEEEEeCCeEEEEeCCCCceeEEEE
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRSTVYMVRCS------PRIVAVGLAAQIYCFDALTLESKFSVL 235 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s------~~~LaV~~~~~I~i~D~~t~e~~~tl~ 235 (627)
++.|..||......+.--+.+.-|.+|.+- ..+++||..-.|.-||..-.|..+++.
T Consensus 72 ~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 72 QTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred cceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 477999999988877666677788888773 367778887889999998777777764
No 399
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=52.76 E-value=1.5e+02 Score=34.91 Aligned_cols=81 Identities=17% Similarity=0.134 Sum_probs=53.5
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEc
Q 046828 379 SQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFS 458 (627)
Q Consensus 379 ~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFS 458 (627)
..|..-....+.+.=|.-+ .+|..+.+|+.+.|||+. .+ ...|+-.- .....|.++.|.
T Consensus 23 ~~~~T~i~~~~li~gss~~-k~a~V~~~~~~LtIWD~~-------~~------------~lE~~~~f-~~~~~I~dLDWt 81 (631)
T PF12234_consen 23 STFETGISNPSLISGSSIK-KIAVVDSSRSELTIWDTR-------SG------------VLEYEESF-SEDDPIRDLDWT 81 (631)
T ss_pred EEEecCCCCcceEeecccC-cEEEEECCCCEEEEEEcC-------Cc------------EEEEeeee-cCCCceeeceee
Confidence 3444434455556555544 456668888889999986 22 12232211 123459999885
Q ss_pred --cCCCEEEEEeCCCeEEEEEcCC
Q 046828 459 --HYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 459 --pDg~~Las~S~dgTvhIw~i~~ 480 (627)
||++.+.+.+-...|.||.--+
T Consensus 82 st~d~qsiLaVGf~~~v~l~~Q~R 105 (631)
T PF12234_consen 82 STPDGQSILAVGFPHHVLLYTQLR 105 (631)
T ss_pred ecCCCCEEEEEEcCcEEEEEEccc
Confidence 6999999999999999997544
No 400
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=52.26 E-value=3e+02 Score=28.86 Aligned_cols=104 Identities=13% Similarity=0.215 Sum_probs=56.8
Q ss_pred CCeEEEEECCCCeEEEEeccC------CCCeEEEEECCCC-----CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcc---
Q 046828 364 AGMVVVKDIVSRSVISQFRAH------TSPISALCFDRSG-----TLLVTASIHGNNINIFRIMPSSSKGRSGSASQ--- 429 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH------~~~Is~laFspdG-----~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~--- 429 (627)
.-.+.+||+.+.+.+.++.-. .+-+..|+++... .+...++..+.-|-|+|+. +|..-+
T Consensus 33 ~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~-------~~~s~Rv~~ 105 (287)
T PF03022_consen 33 PPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLA-------TGKSWRVLH 105 (287)
T ss_dssp --EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETT-------TTEEEEEET
T ss_pred CcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEcc-------CCcEEEEec
Confidence 457889999999987776532 3457888888732 4555566655568899986 221100
Q ss_pred ---ccCCCCce----eEEEEEeecCCcCcEEEEEEcc---CCCEEEEEeCCCeEEEEEcCC
Q 046828 430 ---TYDWTSSH----VHLYKLHRGMTSAVIQDICFSH---YSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 430 ---~~~~~~~~----~~l~~l~rG~t~a~I~sIaFSp---Dg~~Las~S~dgTvhIw~i~~ 480 (627)
..++.... -..+++. ..|..|+.+| |++||.-....++ ++|.+..
T Consensus 106 ~~~~~~p~~~~~~i~g~~~~~~-----dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T 160 (287)
T PF03022_consen 106 NSFSPDPDAGPFTIGGESFQWP-----DGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPT 160 (287)
T ss_dssp CGCTTS-SSEEEEETTEEEEET-----TSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEH
T ss_pred CCcceeccccceeccCceEecC-----CCccccccCCCCCCccEEEEEeCCCC-cEEEEEH
Confidence 00000000 0111111 1277888876 8888887766654 6677654
No 401
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=51.85 E-value=35 Score=38.29 Aligned_cols=49 Identities=12% Similarity=0.272 Sum_probs=34.3
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
.++.|.+||..+++.+..+... +|..+-||++|+++|-.+.+. |.|++.
T Consensus 124 ~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~--i~il~~ 172 (443)
T PF04053_consen 124 SSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDS--IYILKY 172 (443)
T ss_dssp ETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-S--EEEEEE
T ss_pred CCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCe--EEEEEe
Confidence 4557999999999999999853 489999999999999999885 566654
No 402
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=51.64 E-value=1e+02 Score=34.12 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=23.5
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 450 AVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 450 a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
..|.++.|+.+. .|++...||++++|++
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDL 108 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeC
Confidence 469999999975 5557779999999987
No 403
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=51.14 E-value=74 Score=27.40 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=27.6
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeC-CCeEEEEEcCC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSS-RGTCHIFVLTP 480 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~-dgTvhIw~i~~ 480 (627)
...|...+ ..|+++||+++|.+++. +++||+|++..
T Consensus 49 va~g~~~a--NGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 49 VASGFSFA--NGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred eeccCCCC--ceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 33565544 88999999999987665 68999998753
No 404
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=48.28 E-value=81 Score=27.17 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=35.2
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
-|.|.-||.+.-+.+ ..+ -..-+-|+++|++++|..++.-+..|+||+..
T Consensus 35 ~~~Vvyyd~~~~~~v--a~g-~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 35 WGNVVYYDGKEVKVV--ASG-FSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CceEEEEeCCEeEEe--ecc-CCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 356777886543222 222 22346789999999999999988889999864
No 405
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.09 E-value=91 Score=31.46 Aligned_cols=77 Identities=18% Similarity=0.280 Sum_probs=47.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeec------CCcCcEEEEEEccC
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRG------MTSAVIQDICFSHY 460 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG------~t~a~I~sIaFSpD 460 (627)
++.. +..+|.+|..-..+|. ++|||+. . +... .+. ..+..+... .....|..+.++.+
T Consensus 14 ~~~~--l~~~~~~Ll~iT~~G~-l~vWnl~-~------~k~~----~~~--~Si~pll~~~~~~~~~~~~~i~~~~lt~~ 77 (219)
T PF07569_consen 14 PVSF--LECNGSYLLAITSSGL-LYVWNLK-K------GKAV----LPP--VSIAPLLNSSPVSDKSSSPNITSCSLTSN 77 (219)
T ss_pred ceEE--EEeCCCEEEEEeCCCe-EEEEECC-C------Ceec----cCC--ccHHHHhcccccccCCCCCcEEEEEEcCC
Confidence 4444 4456888999999998 7999996 2 1100 000 001111110 12235999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCC
Q 046828 461 SQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 461 g~~Las~S~dgTvhIw~i~~ 480 (627)
|.-|++-+ +|....|+.+-
T Consensus 78 G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 78 GVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred CCEEEEEe-CCCEEEecccc
Confidence 98887765 47788888653
No 406
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.03 E-value=1.7e+02 Score=36.95 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=31.7
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCC
Q 046828 383 AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPS 418 (627)
Q Consensus 383 aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~ 418 (627)
.|.+||..|+.+.+-.+|.+=+++|+ |++||+.+.
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~-v~~Y~i~~~ 274 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGT-VSAYDIGGN 274 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCce-EEEEEccCC
Confidence 67889999999999999999999998 899999743
No 407
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=46.93 E-value=2e+02 Score=31.00 Aligned_cols=31 Identities=35% Similarity=0.503 Sum_probs=25.4
Q ss_pred CcEEEEEECCCCceEEEEecCC---eEEEEEecC
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRS---TVYMVRCSP 209 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s---~V~sV~~s~ 209 (627)
.+-|.+.|++||+.|+.|+|.+ ++++|++-|
T Consensus 281 ~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLP 314 (335)
T TIGR03032 281 GCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLP 314 (335)
T ss_pred cccEEEEECCCCCEEEEEEeCCceeEEEEEEEec
Confidence 3779999999999999999986 556666543
No 408
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=44.30 E-value=8.3 Score=44.40 Aligned_cols=93 Identities=17% Similarity=0.227 Sum_probs=61.9
Q ss_pred CCCCeEEEEECCCC----eEEEEecc-CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 362 DIAGMVVVKDIVSR----SVISQFRA-HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 362 ~~dG~V~IwD~~s~----~~l~~~~a-H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
..+-.+.|||+.++ +.-..|.+ -....+.+|+..+-+++.+|..... +++||+.....
T Consensus 126 rnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~-~~ifdlRqs~~---------------- 188 (783)
T KOG1008|consen 126 RNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRS-VHIFDLRQSLD---------------- 188 (783)
T ss_pred cccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccch-hhhhhhhhhhh----------------
Confidence 35667999999876 22223333 3345678899988888888887755 79999862210
Q ss_pred eeEEEEEeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEc
Q 046828 437 HVHLYKLHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i 478 (627)
....+ .|. .++.+..+| ...|+|+.+ ||-|-+||.
T Consensus 189 --~~~sv---nTk-~vqG~tVdp~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 189 --SVSSV---NTK-YVQGITVDPFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred --hhhhh---hhh-hcccceecCCCCCceeccc-cCceeeccc
Confidence 01111 111 267777788 778888776 999999994
No 409
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=43.68 E-value=1.3e+02 Score=31.53 Aligned_cols=56 Identities=9% Similarity=0.151 Sum_probs=40.5
Q ss_pred CcEEEEEECCCCceEEEEecCCeEEE--EEecC-cEEEEE-eCCeEEEEeCCCCceeEEE
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRSTVYM--VRCSP-RIVAVG-LAAQIYCFDALTLESKFSV 234 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s~V~s--V~~s~-~~LaV~-~~~~I~i~D~~t~e~~~tl 234 (627)
...|+.||+.||+......++..... |.+-. ++.... .++..++||..|++.+.++
T Consensus 67 ~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~ 126 (264)
T PF05096_consen 67 QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTF 126 (264)
T ss_dssp EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEE
Confidence 36799999999999999988876644 44434 444444 3567999999999987766
No 410
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.49 E-value=41 Score=33.99 Aligned_cols=38 Identities=13% Similarity=0.264 Sum_probs=29.0
Q ss_pred EEEecCCeEEEEEecCcE-EEEEeCCeEEEEeCCCCcee
Q 046828 194 HVLRFRSTVYMVRCSPRI-VAVGLAAQIYCFDALTLESK 231 (627)
Q Consensus 194 ~tL~f~s~V~sV~~s~~~-LaV~~~~~I~i~D~~t~e~~ 231 (627)
-.|...++|.-+.++... +|+...+.+|+||+.+++..
T Consensus 7 P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 7 PPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAV 45 (219)
T ss_pred CcEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence 456677888888888754 55667889999999988753
No 411
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=41.82 E-value=1.2e+02 Score=21.17 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=17.1
Q ss_pred CCCCEEEEEeCCCCEEEEEeCC
Q 046828 395 RSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 395 pdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
|+|+.|..+......|.++|..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~ 22 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTA 22 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECC
Confidence 6888888877766668999974
No 412
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=41.42 E-value=1.9e+02 Score=35.18 Aligned_cols=30 Identities=27% Similarity=0.581 Sum_probs=23.3
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecC
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRD 111 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~d 111 (627)
+.=|++|+.+||+|-++++.. -++||.-+|
T Consensus 1018 k~KlcIgC~kgFeIvsle~l~-~esLL~paD 1047 (1175)
T COG5422 1018 KNKLCIGCKKGFEIVSLENLR-TESLLNPAD 1047 (1175)
T ss_pred ccceEEeecCCceEeechhhh-hHhhcCccc
Confidence 446889999999999999744 356776666
No 413
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=40.84 E-value=66 Score=36.00 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=32.9
Q ss_pred CcEEEEEECCCCceEEEEecCC---eEEEEEecC------cEEEEEeCCeEEEEe
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRS---TVYMVRCSP------RIVAVGLAAQIYCFD 224 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s---~V~sV~~s~------~~LaV~~~~~I~i~D 224 (627)
-+++.|||+++++.++++.+.. -...|+|-. -++.+++..+|+.|-
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~ 275 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFY 275 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEE
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEE
Confidence 3789999999999999999863 578899853 366677888887664
No 414
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=39.75 E-value=1.4e+02 Score=35.92 Aligned_cols=92 Identities=13% Similarity=0.176 Sum_probs=56.3
Q ss_pred EEEEeccC---CCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecC-----
Q 046828 377 VISQFRAH---TSPISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGM----- 447 (627)
Q Consensus 377 ~l~~~~aH---~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~----- 447 (627)
++..|..+ ..+...++|+| +-+.||..+.+|+ .-||++. ..... ... . ..+.....|.
T Consensus 134 ~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~-Wsvw~i~-~~~~~-~~~-----~-----~~~~~~~~gsi~~d~ 200 (765)
T PF10214_consen 134 PLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGN-WSVWDIK-GRPKR-KSS-----N-----LRLSRNISGSIIFDP 200 (765)
T ss_pred eeEEechhhcCCCccceEEeccCccceEEEEeccCc-EEEEEec-ccccc-CCc-----c-----eeeccCCCccccCCC
Confidence 34444433 35788999998 5678999999997 8999992 11110 000 0 0111111121
Q ss_pred -CcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 448 -TSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 448 -t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
.......|.|.++-..|++. ++..+.+++++...
T Consensus 201 ~e~s~w~rI~W~~~~~~lLv~-~r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 201 EELSNWKRILWVSDSNRLLVC-NRSKLMLIDFESNW 235 (765)
T ss_pred cccCcceeeEecCCCCEEEEE-cCCceEEEECCCCC
Confidence 11225688999998888777 46678889987653
No 415
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=39.64 E-value=59 Score=21.94 Aligned_cols=25 Identities=32% Similarity=0.592 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 451 VIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 451 ~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
.|.+|+-++. |+|++++.+-++||.
T Consensus 3 ~i~aia~g~~--~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDS--WVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCC--EEEEEeCCCeEEecC
Confidence 3677777665 999999999999983
No 416
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.45 E-value=5.1e+02 Score=27.73 Aligned_cols=82 Identities=12% Similarity=0.184 Sum_probs=57.0
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCC
Q 046828 383 AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQ 462 (627)
Q Consensus 383 aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~ 462 (627)
+-+..|++|.|||+-+.|.+-..+... -|+ +.. .|.. .+...| .|... --.|.+.-+++
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~-iVE-lt~------~Gdl----------irtiPL-~g~~D--pE~Ieyig~n~ 141 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAA-IVE-LTK------EGDL----------IRTIPL-TGFSD--PETIEYIGGNQ 141 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCce-EEE-Eec------CCce----------EEEecc-cccCC--hhHeEEecCCE
Confidence 334559999999999999888888774 344 321 2320 122233 34432 46788999999
Q ss_pred EEEEEeCCCeEEEEEcCCCCCee
Q 046828 463 WIAIVSSRGTCHIFVLTPFGGET 485 (627)
Q Consensus 463 ~Las~S~dgTvhIw~i~~~gg~~ 485 (627)
++++-=.+.++.+|.+++.+...
T Consensus 142 fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 142 FVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred EEEEehhcceEEEEEEcCCccEE
Confidence 99998899999999998875543
No 417
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=39.32 E-value=75 Score=36.57 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=39.7
Q ss_pred eEEEEECCCCCEEEEEeCCCC-----EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCC
Q 046828 388 ISALCFDRSGTLLVTASIHGN-----NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQ 462 (627)
Q Consensus 388 Is~laFspdG~lLaTaS~dGt-----~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~ 462 (627)
.--|+|+|.|++.+.-+-.+. ..-+|.+. .. ++. .-.+.++.++-..+.+..++||||++
T Consensus 502 PDnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~-~~------------~p~--~g~~~rf~t~P~g~E~tG~~FspD~~ 566 (616)
T COG3211 502 PDNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQML-TP------------DPK--TGTIKRFLTGPIGCEFTGPCFSPDGK 566 (616)
T ss_pred CCceEECCCCCEEEEecCCCCccCcccccccccc-cC------------CCc--cceeeeeccCCCcceeecceeCCCCc
Confidence 345899999998776443321 22334321 11 000 01455666666667899999999998
Q ss_pred EEEEE
Q 046828 463 WIAIV 467 (627)
Q Consensus 463 ~Las~ 467 (627)
-|.++
T Consensus 567 TlFV~ 571 (616)
T COG3211 567 TLFVN 571 (616)
T ss_pred eEEEE
Confidence 88765
No 418
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=39.10 E-value=1.5e+02 Score=30.40 Aligned_cols=67 Identities=9% Similarity=0.101 Sum_probs=43.6
Q ss_pred CeEEEEECCCCCEEEEEe--CCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEE
Q 046828 387 PISALCFDRSGTLLVTAS--IHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWI 464 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS--~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~L 464 (627)
.+...+.++||+.+|... .++..+.++... + ....+..|. .+..-+|++++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--------~-------------~~~~~~~g~---~l~~PS~d~~g~~W 80 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--------G-------------PVRPVLTGG---SLTRPSWDPDGWVW 80 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--------C-------------cceeeccCC---ccccccccCCCCEE
Confidence 688899999999998877 777766666542 1 111111222 36777888887666
Q ss_pred EEEeCCCeEEEEE
Q 046828 465 AIVSSRGTCHIFV 477 (627)
Q Consensus 465 as~S~dgTvhIw~ 477 (627)
+....+...+++.
T Consensus 81 ~v~~~~~~~~~~~ 93 (253)
T PF10647_consen 81 TVDDGSGGVRVVR 93 (253)
T ss_pred EEEcCCCceEEEE
Confidence 6666566666664
No 419
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=38.85 E-value=1.7e+02 Score=35.80 Aligned_cols=161 Identities=14% Similarity=0.141 Sum_probs=0.0
Q ss_pred EEEEECCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE-
Q 046828 389 SALCFDRSGT-LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI- 466 (627)
Q Consensus 389 s~laFspdG~-lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las- 466 (627)
+.|+|=.+-+ .|+.++.||...++-.+. ....|.+-+|||||+.||-
T Consensus 319 tkiAfv~~~~~~L~~~D~dG~n~~~ve~~-------------------------------~~~~i~sP~~SPDG~~vAY~ 367 (912)
T TIGR02171 319 AKLAFRNDVTGNLAYIDYTKGASRAVEIE-------------------------------DTISVYHPDISPDGKKVAFC 367 (912)
T ss_pred eeEEEEEcCCCeEEEEecCCCCceEEEec-------------------------------CCCceecCcCCCCCCEEEEE
Q ss_pred EeCCC-----eEEEEEcCCCCCe-eecccccccccCCCCCCCccCCCCCCCccccccCCCCCCCCCCeeeeeeeeeecCC
Q 046828 467 VSSRG-----TCHIFVLTPFGGE-TVLQIQNSHVDRPTLSPVLSVPWWSSPSFMINQPSFSLPPPLPVTLSVVSRIKNNN 540 (627)
Q Consensus 467 ~S~dg-----TvhIw~i~~~gg~-~~~~~h~s~v~~~~~~p~~~~~~~~~~~~s~~q~~~~~~~p~~~~l~~~~~i~~~~ 540 (627)
.+-.+ .|.|-+|...+.. +.+.-.++ .+-.||+....-..|+--.=+.=....
T Consensus 368 ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~a---------------------aiprwrv~e~gdt~ivyv~~a~nn~d~ 426 (912)
T TIGR02171 368 TGIEGLPGKSSVYVRNLNASGSGLVKLPVENA---------------------AIPRWRVLENGDTVIVYVSDASNNKDD 426 (912)
T ss_pred EeecCCCCCceEEEEehhccCCCceEeecccc---------------------cccceEecCCCCeEEEEEcCCCCCcch
Q ss_pred CCccccccccccccCCccCCCccceeeeccccccc---------------------------------------------
Q 046828 541 SGWLNTVSSTASSTAGKTSIPSGALAAVFHSSLHQ--------------------------------------------- 575 (627)
Q Consensus 541 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~--------------------------------------------- 575 (627)
..|.++=+=..-.|.||---|.--.-..||.+...
T Consensus 427 ~~~~~~stw~v~f~~gkfg~p~kl~dga~hggvs~~~~lavtga~llr~~~~~~~~~~~~~~vwyn~eqacn~sl~~d~~ 506 (912)
T TIGR02171 427 ATFAAYSTWQVPFANGKFGTPKKLFDGAYHGGVSEDLNLAVSGARLLRAHVANEDVDNGKDDVWYNGEQACNASLAKDGS 506 (912)
T ss_pred hhhhhcceEEEEecCCCCCCchhhhccccccccccCCceeeehhhHhhhhhcccccccCccceeecchhccchhhhccCC
Q ss_pred ------------CCCcccccccCcceEEEEcCCCcEEE
Q 046828 576 ------------DLQPLDSKVNDLEHVLVYTPSGHVVQ 601 (627)
Q Consensus 576 ------------~~~~~~~~~~~~~~l~v~~~~G~l~~ 601 (627)
++..+..+-..-|+|||+.+.|+|+|
T Consensus 507 ~rt~fldfgg~tg~~fvg~~y~~he~~lvads~gklv~ 544 (912)
T TIGR02171 507 KRTLFLDFGGSTGQAFVGQKYGVHERLLVADSKGKLVR 544 (912)
T ss_pred cceEEEecCCccchhhccccccceeEEEEecCCCchhh
No 420
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=36.88 E-value=99 Score=35.50 Aligned_cols=58 Identities=16% Similarity=0.083 Sum_probs=42.5
Q ss_pred CcEEEEEECCCCceEEEEecCCeEE-E-EEecCcEEEEEe-CCeEEEEeCCCCceeEEEEc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRSTVY-M-VRCSPRIVAVGL-AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s~V~-s-V~~s~~~LaV~~-~~~I~i~D~~t~e~~~tl~~ 236 (627)
...|.=+|+.||+.+-..+...+.. + +.....++.++. ++.+++||+.|+|.++....
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 3678999999999998887654321 1 222335565654 77899999999999988765
No 421
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=36.84 E-value=11 Score=44.90 Aligned_cols=53 Identities=21% Similarity=0.375 Sum_probs=35.7
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEE-----------ECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALC-----------FDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~la-----------FspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
..+|.|++.....-. ...|+.|...+..++ +||||+.+|+++.||. ++.|++-
T Consensus 202 ~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiy 265 (1283)
T KOG1916|consen 202 LKGGEIRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIY 265 (1283)
T ss_pred cCCCceeEeeechHH-HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeee
Confidence 456777764443321 145666765543333 6999999999999997 6888764
No 422
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=35.29 E-value=84 Score=22.30 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=13.8
Q ss_pred EecCcEEEE-EeCCeEEEEeCCC
Q 046828 206 RCSPRIVAV-GLAAQIYCFDALT 227 (627)
Q Consensus 206 ~~s~~~LaV-~~~~~I~i~D~~t 227 (627)
.+...+|.+ +.+++++++|+.|
T Consensus 18 ~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 18 AVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp EECTSEEEEE-TTSEEEEEETT-
T ss_pred EEECCEEEEEcCCCEEEEEeCCC
Confidence 444545544 4578999999875
No 423
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=35.23 E-value=1.3e+02 Score=31.11 Aligned_cols=49 Identities=22% Similarity=0.126 Sum_probs=34.1
Q ss_pred EEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC--CEEEEEeC
Q 046828 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG--NNINIFRI 415 (627)
Q Consensus 367 V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG--t~I~Vwdi 415 (627)
-.+||+.+.+....-.....-++.=+|-|||++|.++.... +.||+|+-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p 98 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTP 98 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEec
Confidence 46899998764332223344567778999999999987632 34788884
No 424
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=35.04 E-value=1e+02 Score=26.75 Aligned_cols=53 Identities=6% Similarity=0.079 Sum_probs=33.0
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC-CCCEEEEE
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI-HGNNINIF 413 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~-dGt~I~Vw 413 (627)
++...|.+.-||..+++....+..- .--+-|++++|++.|+.+=. ..++.|.|
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred cCCCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 3567899999999998754444442 24578999999997766543 33444444
No 425
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=34.70 E-value=3.5e+02 Score=28.48 Aligned_cols=39 Identities=31% Similarity=0.496 Sum_probs=29.4
Q ss_pred eEEEEeccCcEEEEecCCC-CCceEEeeecCCceEEEEEeeC
Q 046828 82 HVLLLGYSNGFQVLDVEDA-TNVSELVSRRDDPVTFLQMQPL 122 (627)
Q Consensus 82 ~vl~~Gy~~G~qVWdv~~~-~~~~ells~~dG~V~~v~~lp~ 122 (627)
+.|++|.+.|+-+-|+... +....+++++ +|..+.+++.
T Consensus 14 ~~lL~GTe~Gly~~~~~~~~~~~~kl~~~~--~v~q~~v~~~ 53 (302)
T smart00036 14 KWLLVGTEEGLYVLNISDQPGTLEKLIGRR--SVTQIWVLEE 53 (302)
T ss_pred cEEEEEeCCceEEEEcccCCCCeEEecCcC--ceEEEEEEhh
Confidence 5799999999999998753 4566666654 6777887754
No 426
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=34.04 E-value=58 Score=23.08 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=20.0
Q ss_pred EEEeCCeEEEEeCCCCceeEEEEcC
Q 046828 213 AVGLAAQIYCFDALTLESKFSVLTY 237 (627)
Q Consensus 213 aV~~~~~I~i~D~~t~e~~~tl~~~ 237 (627)
+...++.|+.+|+.||+.+.....-
T Consensus 5 ~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 5 VGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EETTTSEEEEEETTTTSEEEEEESS
T ss_pred EeCCCCEEEEEECCCCCEEEeeeCC
Confidence 3345678999999999999888653
No 427
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=33.95 E-value=95 Score=20.62 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=18.1
Q ss_pred EEEEEeCCeEEEEeCCCCceeEEE
Q 046828 211 IVAVGLAAQIYCFDALTLESKFSV 234 (627)
Q Consensus 211 ~LaV~~~~~I~i~D~~t~e~~~tl 234 (627)
+++...++.++.+|+.+++.+.+.
T Consensus 9 v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 9 VYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEcCCCEEEEEEcccCcEEEEc
Confidence 344445779999999999987653
No 428
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=31.67 E-value=5.5e+02 Score=26.28 Aligned_cols=55 Identities=9% Similarity=0.045 Sum_probs=40.7
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecCcEEEEE-eCCeEEEEeCCCCceeEEE
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVG-LAAQIYCFDALTLESKFSV 234 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~~~LaV~-~~~~I~i~D~~t~e~~~tl 234 (627)
+.-..||..+-+++.++.++..=+.+.-..+.|..+ ....++.-|..|+....++
T Consensus 111 gvaf~~d~~t~~~lg~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v 166 (262)
T COG3823 111 GVAFKYDADTLEELGRFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTV 166 (262)
T ss_pred ceeEEEChHHhhhhcccccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceE
Confidence 556788999999999999988888887766444443 4456777788887766554
No 429
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=31.04 E-value=2.4e+02 Score=24.44 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=16.7
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEE
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIV 467 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~ 467 (627)
...+.+|..- -+.|++|+|+++|+++
T Consensus 49 ~~vl~~~L~f--pNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 49 TTVLLDGLYF--PNGVALSPDESFVLVA 74 (89)
T ss_dssp EEEEEEEESS--EEEEEE-TTSSEEEEE
T ss_pred EEEehhCCCc--cCeEEEcCCCCEEEEE
Confidence 3334455433 4899999999977664
No 430
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=29.29 E-value=62 Score=33.07 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=46.4
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCC-CCeEEEEECCCCCEEEEE--eCCCCEEEEEeCCC
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHT-SPISALCFDRSGTLLVTA--SIHGNNINIFRIMP 417 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~-~~Is~laFspdG~lLaTa--S~dGt~I~Vwdi~p 417 (627)
+..+|.|+-|.++-.+.+...-.|+ .++..+..+..+++|+.+ |.+-. ++.|++.+
T Consensus 120 ~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~-~k~W~ve~ 178 (238)
T KOG2444|consen 120 GAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRV-LKKWNVEK 178 (238)
T ss_pred eccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchh-hhhcchhh
Confidence 4578999999999999888888888 788888888888888888 77754 78888864
No 431
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=29.28 E-value=6.4e+02 Score=27.21 Aligned_cols=111 Identities=12% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCCC-eEEEEECCCC----eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 362 DIAG-MVVVKDIVSR----SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 362 ~~dG-~V~IwD~~s~----~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
...+ .|.+++-.++ .....|.........|+|.++| ++++...+ +.++-|..-.... .+
T Consensus 43 ~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~--i~~~~d~~gdg~a--d~----------- 106 (367)
T TIGR02604 43 GPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPD--ILFLRDKDGDDKA--DG----------- 106 (367)
T ss_pred CCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCe--EEEEeCCCCCCCC--CC-----------
Q ss_pred eeEEEEEeecCCcCc------EEEEEEccCCCEEEEEeCCCe-----------------EEEEEcCCCCCeeecccc
Q 046828 437 HVHLYKLHRGMTSAV------IQDICFSHYSQWIAIVSSRGT-----------------CHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~------I~sIaFSpDg~~Las~S~dgT-----------------vhIw~i~~~gg~~~~~~h 490 (627)
....+..+..... ...++|.|||++.++.+..+. =.||.+++.++...+-.+
T Consensus 107 --~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~ 181 (367)
T TIGR02604 107 --EREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH 181 (367)
T ss_pred --ccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec
No 432
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=28.94 E-value=7.1e+02 Score=26.25 Aligned_cols=26 Identities=8% Similarity=0.124 Sum_probs=19.2
Q ss_pred cceEEEEcCCCcEEEEEeeccCCCCc
Q 046828 587 LEHVLVYTPSGHVVQYKLLSSIGGES 612 (627)
Q Consensus 587 ~~~l~v~~~~G~l~~y~l~p~~~~~~ 612 (627)
---|||+-.+=.+..|+-+|..|...
T Consensus 216 tG~LYIaeEdvaiWK~~Aep~~G~~g 241 (364)
T COG4247 216 TGFLYIAEEDVAIWKYEAEPNRGNTG 241 (364)
T ss_pred cceEEEeeccceeeecccCCCCCCcc
Confidence 33688888888888888888777543
No 433
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=28.82 E-value=1.1e+03 Score=28.43 Aligned_cols=72 Identities=11% Similarity=0.022 Sum_probs=44.8
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccC--CCEE
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHY--SQWI 464 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpD--g~~L 464 (627)
....|.|.++-..|+.++.. .+.++|+..... ..+ +....+..+|.++.=+++ +..+
T Consensus 205 ~w~rI~W~~~~~~lLv~~r~--~l~~~d~~~~~~-----------------~~~--l~~~~~~~~IlDv~~~~~~~~~~F 263 (765)
T PF10214_consen 205 NWKRILWVSDSNRLLVCNRS--KLMLIDFESNWQ-----------------TEY--LVTAKTWSWILDVKRSPDNPSHVF 263 (765)
T ss_pred cceeeEecCCCCEEEEEcCC--ceEEEECCCCCc-----------------cch--hccCCChhheeeEEecCCccceEE
Confidence 34578898887777777765 378899862210 011 323334456999999887 4444
Q ss_pred EEEeCCCeEEEEEcCCC
Q 046828 465 AIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 465 as~S~dgTvhIw~i~~~ 481 (627)
+..+ ..|.++++.+.
T Consensus 264 iLTs--~eiiw~~~~~~ 278 (765)
T PF10214_consen 264 ILTS--KEIIWLDVKSS 278 (765)
T ss_pred EEec--CeEEEEEccCC
Confidence 4433 46777777663
No 434
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=28.71 E-value=1e+03 Score=27.99 Aligned_cols=62 Identities=21% Similarity=0.355 Sum_probs=44.3
Q ss_pred EEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeC
Q 046828 390 ALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSS 469 (627)
Q Consensus 390 ~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~ 469 (627)
-|||+|.+..+|.||..-.+|-||.+.|..- ......+|..+. +-..|+|=.|...|+..+.
T Consensus 343 liAfn~kaq~VAVASNTcn~ilVYSv~~s~m---------------PniQqIqLe~~E---RPKGiCFltdklLLilVGk 404 (671)
T PF15390_consen 343 LIAFNPKAQVVAVASNTCNIILVYSVTPSSM---------------PNIQQIQLESNE---RPKGICFLTDKLLLILVGK 404 (671)
T ss_pred eeeeCCcCCEEEEEecCCcEEEEEEeccccC---------------CCeeEEEcccCC---CCceeeEccCCeEEEEecc
Confidence 4899999999999999999999999874321 112445554432 3577888888777766543
No 435
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=28.25 E-value=1.5e+02 Score=23.43 Aligned_cols=32 Identities=6% Similarity=-0.020 Sum_probs=24.8
Q ss_pred EEEEEEccCCCEEEEEeC-----CCeEEEEEcCCCCC
Q 046828 452 IQDICFSHYSQWIAIVSS-----RGTCHIFVLTPFGG 483 (627)
Q Consensus 452 I~sIaFSpDg~~Las~S~-----dgTvhIw~i~~~gg 483 (627)
+++++.-||||.|+++.. +.-..|+++++.|.
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGs 39 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGS 39 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCC
Confidence 678999999999999964 44566788877654
No 436
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.92 E-value=3.1e+02 Score=29.32 Aligned_cols=62 Identities=15% Similarity=0.306 Sum_probs=37.6
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEeCC----CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee-cCCcCcEEE
Q 046828 380 QFRAHTSPISALCFDRSGTLLVTASIH----GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR-GMTSAVIQD 454 (627)
Q Consensus 380 ~~~aH~~~Is~laFspdG~lLaTaS~d----Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r-G~t~a~I~s 454 (627)
+|.+|. .|||||.+|...=.| .-+|-|||.. . + ..++-++.. |. --..
T Consensus 114 HfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r-~------~-----------fqrvgE~~t~Gi---GpHe 166 (366)
T COG3490 114 HFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAR-E------G-----------FQRVGEFSTHGI---GPHE 166 (366)
T ss_pred eeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecc-c------c-----------cceecccccCCc---Ccce
Confidence 455564 699999998654222 1147788874 1 1 013333311 22 1467
Q ss_pred EEEccCCCEEEEEe
Q 046828 455 ICFSHYSQWIAIVS 468 (627)
Q Consensus 455 IaFSpDg~~Las~S 468 (627)
+.|.+||+.|+++.
T Consensus 167 v~lm~DGrtlvvan 180 (366)
T COG3490 167 VTLMADGRTLVVAN 180 (366)
T ss_pred eEEecCCcEEEEeC
Confidence 89999999999884
No 437
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=26.80 E-value=1.3e+02 Score=19.94 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=20.5
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEE
Q 046828 452 IQDICFSHYSQWIAIVSSRGTCHIF 476 (627)
Q Consensus 452 I~sIaFSpDg~~Las~S~dgTvhIw 476 (627)
..+|+.+++|+.+++=+....|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4788999999888888888888776
No 438
>PRK10115 protease 2; Provisional
Probab=26.77 E-value=3.6e+02 Score=32.14 Aligned_cols=100 Identities=5% Similarity=0.024 Sum_probs=55.1
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC-C----CEEEEEeCCCCCCCCCCCCCccccCCC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH-G----NNINIFRIMPSSSKGRSGSASQTYDWT 434 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d-G----t~I~Vwdi~p~~~~~~~g~~~~~~~~~ 434 (627)
.+++.-.|+|.|+.+++.+...-.... ..++|.+||+.|+-...+ + ..|..+++. ++.
T Consensus 148 ~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg-------t~~-------- 210 (686)
T PRK10115 148 LSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG-------TPA-------- 210 (686)
T ss_pred CCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC-------CCh--------
Confidence 355667799999998864322222222 459999999866665543 2 234444543 110
Q ss_pred CceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCC---eEEEEEcC
Q 046828 435 SSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRG---TCHIFVLT 479 (627)
Q Consensus 435 ~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dg---TvhIw~i~ 479 (627)
..-..+++- ........+..+.|++++.+.+..+ .+.+++..
T Consensus 211 ~~d~lv~~e---~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 211 SQDELVYEE---KDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred hHCeEEEee---CCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 001245442 2221122445566999988766655 57777753
No 439
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=26.18 E-value=5.7e+02 Score=26.94 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=37.3
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe-----CCCCEEEEEeCC
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTAS-----IHGNNINIFRIM 416 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS-----~dGt~I~Vwdi~ 416 (627)
..-|.+||+.+.+=...-..-...|+.|.|..+.++|+.|. .....+..||..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~ 72 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFK 72 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecC
Confidence 45689999988653333333456899999998888888886 233457788875
No 440
>PRK13684 Ycf48-like protein; Provisional
Probab=25.72 E-value=3.2e+02 Score=29.28 Aligned_cols=66 Identities=15% Similarity=0.197 Sum_probs=40.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEE
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIA 465 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~La 465 (627)
..+..+.+.|+|.+++++. .|.+++-+|- .|. .-..+.++ +...++++++.++++.++
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~--------gg~------------tW~~~~~~-~~~~l~~i~~~~~g~~~~ 230 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEP--------GQT------------AWTPHQRN-SSRRLQSMGFQPDGNLWM 230 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-CceEEEEcCC--------CCC------------eEEEeeCC-CcccceeeeEcCCCCEEE
Confidence 4678899999998776654 5654333221 111 11122232 334699999999999877
Q ss_pred EEeCCCeEE
Q 046828 466 IVSSRGTCH 474 (627)
Q Consensus 466 s~S~dgTvh 474 (627)
++ ..|.+.
T Consensus 231 vg-~~G~~~ 238 (334)
T PRK13684 231 LA-RGGQIR 238 (334)
T ss_pred Ee-cCCEEE
Confidence 65 567653
No 441
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=25.25 E-value=7.2e+02 Score=27.77 Aligned_cols=57 Identities=5% Similarity=-0.009 Sum_probs=36.8
Q ss_pred cEEEEEECCCCceEEEEe-cCC-e---EEEEEec--------------C--cEEEEE--eCCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLR-FRS-T---VYMVRCS--------------P--RIVAVG--LAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~-f~s-~---V~sV~~s--------------~--~~LaV~--~~~~I~i~D~~t~e~~~tl~~ 236 (627)
++|.|+|+.++..|+..| +++ . |....-. + ..||+= .-+-|.||+++++.++..+..
T Consensus 329 GRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 329 GRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred CcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 569999999999998887 454 2 2111111 1 123332 244599999999998877754
No 442
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=25.21 E-value=2.6e+02 Score=28.34 Aligned_cols=43 Identities=9% Similarity=0.302 Sum_probs=30.3
Q ss_pred CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeC
Q 046828 407 GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSS 469 (627)
Q Consensus 407 Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~ 469 (627)
|..|.+|++..+. . ..+.++. |-..|..|+++.-|.||++-=.
T Consensus 37 g~~Vev~~l~~~~-----~------------~~~~~F~---Tv~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 37 GCKVEVYDLEQEE-----C------------PLLCTFS---TVGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred CCEEEEEEcccCC-----C------------ceeEEEc---chhheeEEEeccccceEEEEEe
Confidence 4559999996221 1 2555553 4456999999999999998533
No 443
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=25.16 E-value=31 Score=41.44 Aligned_cols=100 Identities=16% Similarity=0.213 Sum_probs=59.8
Q ss_pred CCCeEEEEECC--CCeE-----EEEeccCCCCeEEEE---ECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccC
Q 046828 363 IAGMVVVKDIV--SRSV-----ISQFRAHTSPISALC---FDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYD 432 (627)
Q Consensus 363 ~dG~V~IwD~~--s~~~-----l~~~~aH~~~Is~la---FspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~ 432 (627)
..|..-|||+. .|+. +..+..-.+++.-|. |-++--++..+-.+|+ |++-.+...
T Consensus 151 ~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~-i~lL~~~ra-------------- 215 (1283)
T KOG1916|consen 151 LVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE-IRLLNINRA-------------- 215 (1283)
T ss_pred HhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc-eeEeeechH--------------
Confidence 45677788864 3433 233333334443333 4456666666666776 677665411
Q ss_pred CCCceeEEEEEeecCCcCcEEEE-----------EEccCCCEEEEEeCCCeEEEEEcCCCCCee
Q 046828 433 WTSSHVHLYKLHRGMTSAVIQDI-----------CFSHYSQWIAIVSSRGTCHIFVLTPFGGET 485 (627)
Q Consensus 433 ~~~~~~~l~~l~rG~t~a~I~sI-----------aFSpDg~~Las~S~dgTvhIw~i~~~gg~~ 485 (627)
+..+.|+|.. ++.++ ..||||+.+|..+.||.++.|.+--+|..+
T Consensus 216 -------~~~l~rsHs~-~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~ 271 (1283)
T KOG1916|consen 216 -------LRSLFRSHSQ-RVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIV 271 (1283)
T ss_pred -------HHHHHHhcCC-CcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecccc
Confidence 1134455432 12222 379999999999999999999987666544
No 444
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=25.14 E-value=9.2 Score=24.77 Aligned_cols=11 Identities=27% Similarity=0.764 Sum_probs=8.8
Q ss_pred EEEcCCCcEEE
Q 046828 591 LVYTPSGHVVQ 601 (627)
Q Consensus 591 ~v~~~~G~l~~ 601 (627)
-+|||+|.|+|
T Consensus 6 t~FSp~Grl~Q 16 (23)
T PF10584_consen 6 TTFSPDGRLFQ 16 (23)
T ss_dssp TSBBTTSSBHH
T ss_pred eeECCCCeEEe
Confidence 36889999876
No 445
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=24.77 E-value=5.3e+02 Score=27.26 Aligned_cols=71 Identities=18% Similarity=0.337 Sum_probs=46.6
Q ss_pred eEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCc----EEEEEEccCCCE
Q 046828 388 ISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAV----IQDICFSHYSQW 463 (627)
Q Consensus 388 Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~----I~sIaFSpDg~~ 463 (627)
|++|...++|.+|+++-.-.+ |.+.|- . +|. -+++| .|.+... =...+|=+|-++
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~-i~~I~~--~-----tG~------------I~W~l-gG~~~~df~~~~~~f~~QHdar~ 204 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTST-IYKIDP--S-----TGK------------IIWRL-GGKRNSDFTLPATNFSWQHDARF 204 (299)
T ss_pred eeeeeecCCccEEEEecccCE-EEEEEC--C-----CCc------------EEEEe-CCCCCCcccccCCcEeeccCCEE
Confidence 788899999999988765544 444442 2 342 45555 3442111 123556678888
Q ss_pred EEEEeCCCeEEEEEcC
Q 046828 464 IAIVSSRGTCHIFVLT 479 (627)
Q Consensus 464 Las~S~dgTvhIw~i~ 479 (627)
+-.+..+++|-|||-.
T Consensus 205 ~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 205 LNESNDDGTISLFDNA 220 (299)
T ss_pred eccCCCCCEEEEEcCC
Confidence 8888899999999973
No 446
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.65 E-value=7e+02 Score=26.36 Aligned_cols=99 Identities=15% Similarity=0.092 Sum_probs=0.0
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
+-+.|.+.+.+.+++.+...|..-..-=..-..+++|.++-.+|.||+ ++.-|..... .+
T Consensus 69 GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~-~yalD~~~~~-------------------cV 128 (354)
T KOG4649|consen 69 GCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGN-FYALDPKTYG-------------------CV 128 (354)
T ss_pred EEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCc-EEEecccccc-------------------eE
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
|+.+=|-. .-.+-+..+-..-|..++..|-+---..+++
T Consensus 129 ykskcgG~--~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 129 YKSKCGGG--TFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred EecccCCc--eeccceecCCCceEEEEeccceEEEEccCCC
No 447
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.94 E-value=1.4e+03 Score=27.64 Aligned_cols=48 Identities=6% Similarity=0.295 Sum_probs=36.8
Q ss_pred eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
.|+|+++. |+.+..+..-..++-.+.|+.+-.+|+ -..+|+ ++||++.
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~-v~k~g~-v~Vy~~~ 112 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELIC-VQKDGT-VHVYGLL 112 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccCCceEEE-Eeccce-EEEeecc
Confidence 58888875 566666665445788899998887665 578998 7999986
No 448
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=22.71 E-value=1e+03 Score=29.90 Aligned_cols=50 Identities=12% Similarity=0.225 Sum_probs=35.4
Q ss_pred cEEEEEECCCCceEEE--Ee-cCCeEEEEEecCcEEEEEe-CCeE--EEEeCCCCc
Q 046828 180 TAVRFYSLRSHNYVHV--LR-FRSTVYMVRCSPRIVAVGL-AAQI--YCFDALTLE 229 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~t--L~-f~s~V~sV~~s~~~LaV~~-~~~I--~i~D~~t~e 229 (627)
+.+++||+-..++.+. ++ ++..|.+++....+|+||. .+.| +.|+-...+
T Consensus 954 ~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~ 1009 (1205)
T KOG1898|consen 954 RFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQ 1009 (1205)
T ss_pred cEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCe
Confidence 6799999977766543 44 3778999999998888885 3444 466655443
No 449
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=22.21 E-value=32 Score=39.89 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=65.9
Q ss_pred CCCCCeEEEEECCCCe--EEEEeccCCCCeEEEEECCC-CCEEEEEeCC---CCEEEEEeCCCCCCCCCCCCCccccCCC
Q 046828 361 TDIAGMVVVKDIVSRS--VISQFRAHTSPISALCFDRS-GTLLVTASIH---GNNINIFRIMPSSSKGRSGSASQTYDWT 434 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~--~l~~~~aH~~~Is~laFspd-G~lLaTaS~d---Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~ 434 (627)
|..+|.|.+-.+.... .-....+|..++++++|++- -..||.+=++ -+-+.|||+. ..-. .+
T Consensus 76 G~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~-s~lt-----------vP 143 (783)
T KOG1008|consen 76 GSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN-SLLT-----------VP 143 (783)
T ss_pred ccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc-cccC-----------CC
Confidence 4456888776665432 13355678899999999985 4456655222 1237899995 2110 00
Q ss_pred CceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 435 SSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 435 ~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
..-..+..+ +-....+++|-.|-+.|.+|.....+|+|++..
T Consensus 144 ---ke~~~fs~~-~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq 185 (783)
T KOG1008|consen 144 ---KESPLFSSS-TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ 185 (783)
T ss_pred ---ccccccccc-cccCccccccccCcchhhcccccchhhhhhhhh
Confidence 111222221 222356899999999999999999999999873
No 450
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.66 E-value=2e+02 Score=32.52 Aligned_cols=77 Identities=16% Similarity=0.314 Sum_probs=52.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEE
Q 046828 385 TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWI 464 (627)
Q Consensus 385 ~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~L 464 (627)
.++|.++.||+|.+.||.--.+.+ |.+++..|.... ....++.+.| ++.|....|+.. .-+
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~-v~f~nf~~d~~~---------------l~~~~~ck~k--~~~IlGF~W~~s-~e~ 126 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKT-VDFCNFIPDNSQ---------------LEYTQECKTK--NANILGFCWTSS-TEI 126 (657)
T ss_pred CCceeEEEeccCcceEEEEecCce-EEEEecCCCchh---------------hHHHHHhccC--cceeEEEEEecC-eeE
Confidence 458999999999999999888876 788876433110 0112222222 345999999887 677
Q ss_pred EEEeCCCeEEEEEcCCC
Q 046828 465 AIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 465 as~S~dgTvhIw~i~~~ 481 (627)
|..++.| +.+|.+.+-
T Consensus 127 A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 127 AFITDQG-IEFYQVLPE 142 (657)
T ss_pred EEEecCC-eEEEEEchh
Confidence 7776665 577887653
No 451
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=21.41 E-value=9.1e+02 Score=24.89 Aligned_cols=105 Identities=10% Similarity=0.214 Sum_probs=62.6
Q ss_pred CCCCCeEEEEECCCCeEEEEeccC-CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAH-TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH-~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
.++++.|...|+. ++.+..+.-. -.-.-.|++--+|+++++.-.+++ +.++++.... .. ... ..
T Consensus 40 ~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~-L~~~~~~~~~-----~~------~~~--~~ 104 (248)
T PF06977_consen 40 QDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQR-LYIFTIDDDT-----TS------LDR--AD 104 (248)
T ss_dssp ETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTE-EEEEEE---------TT--------E--EE
T ss_pred ECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCc-EEEEEEeccc-----cc------cch--hh
Confidence 3568889888974 6777776633 345788899888876665434665 7888884211 00 000 11
Q ss_pred EEEEeecCC---cCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 440 LYKLHRGMT---SAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 440 l~~l~rG~t---~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
..++.-|.. +..+-.|+|.+..+.|.++-.+....||.+..
T Consensus 105 ~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 105 VQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp EEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred ceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 222222322 23489999999988888898998899999875
No 452
>PRK13613 lipoprotein LpqB; Provisional
Probab=20.82 E-value=4e+02 Score=31.28 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=48.5
Q ss_pred CeEEEEECCCCCEEEEEeCC---CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee-cCCcCcEEEEEEccCCC
Q 046828 387 PISALCFDRSGTLLVTASIH---GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR-GMTSAVIQDICFSHYSQ 462 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~d---Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r-G~t~a~I~sIaFSpDg~ 462 (627)
+|..|..|+||..+|.-.+. ++ +.|=-+.... .|. ..|-.++. +.....+.+++|..++.
T Consensus 456 ~I~~lrvSrDG~RvAvv~~~~g~~~-v~va~V~R~~----~G~-----------~~l~~~~~l~~~l~~v~~~~W~~~~s 519 (599)
T PRK13613 456 RVVAVRVARDGVRVALIVEKDGRRS-LQIGRIVRDA----KAV-----------VSVEEFRSLAPELEDVTDMSWAGDSQ 519 (599)
T ss_pred EeEEEEECCCccEEEEEEecCCCcE-EEEEEEEeCC----CCc-----------EEeeccEEeccCCCccceeEEcCCCE
Confidence 79999999999998886652 33 4555554211 121 12332221 11122489999999999
Q ss_pred EEEEEe-CCCeEEEEEcCCCC
Q 046828 463 WIAIVS-SRGTCHIFVLTPFG 482 (627)
Q Consensus 463 ~Las~S-~dgTvhIw~i~~~g 482 (627)
.++.+. ..+..-+|.++-.|
T Consensus 520 L~Vlg~~~~~~~~v~~v~vdG 540 (599)
T PRK13613 520 LVVLGREEGGVQQARYVQVDG 540 (599)
T ss_pred EEEEeccCCCCcceEEEecCC
Confidence 877553 34356677776544
No 453
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=20.47 E-value=5.8e+02 Score=29.41 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred cCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCC--------CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccc
Q 046828 359 SDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRS--------GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQT 430 (627)
Q Consensus 359 ~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspd--------G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~ 430 (627)
.+++....+.=-|++-|+.+-...-|..- -+.|.|+ -+.|+--|..+ ||.|.|...+ +.
T Consensus 484 ~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~s----vFrIDPR~~g--NK----- 550 (776)
T COG5167 484 LDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYS----VFRIDPRARG--NK----- 550 (776)
T ss_pred ecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccc----eEEecccccC--Cc-----
Q ss_pred cCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 431 YDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 431 ~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
..+-+...-.+.-...++.-...| ++|++|.+|-|++|+
T Consensus 551 -------i~v~esKdY~tKn~Fss~~tTesG-yIa~as~kGDirLyD 589 (776)
T COG5167 551 -------IKVVESKDYKTKNKFSSGMTTESG-YIAAASRKGDIRLYD 589 (776)
T ss_pred -------eeeeeehhccccccccccccccCc-eEEEecCCCceeeeh
No 454
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=20.08 E-value=1.8e+02 Score=33.23 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=25.8
Q ss_pred EEEEEEcc----CCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 452 IQDICFSH----YSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 452 I~sIaFSp----Dg~~Las~S~dgTvhIw~i~~~gg 483 (627)
+.+++++. +..+|++.+.|++++||++.....
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 56666666 889999999999999999987665
Done!