Query 046828
Match_columns 627
No_of_seqs 392 out of 2221
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 08:02:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vu4_A KMHSV2; beta-propeller 100.0 1.4E-29 4.9E-34 267.2 37.7 269 59-521 16-301 (355)
2 3ow8_A WD repeat-containing pr 100.0 1.7E-26 5.9E-31 240.5 33.8 262 58-495 28-294 (321)
3 4gqb_B Methylosome protein 50; 100.0 1E-25 3.6E-30 238.0 33.6 240 62-480 82-331 (344)
4 1vyh_C Platelet-activating fac 99.9 6E-25 2E-29 236.3 34.5 255 60-495 106-384 (410)
5 1got_B GT-beta; complex (GTP-b 99.9 1.6E-24 5.5E-29 226.4 36.7 257 60-495 53-316 (340)
6 3ow8_A WD repeat-containing pr 99.9 4.5E-24 1.5E-28 222.3 36.8 240 59-479 77-320 (321)
7 2ynn_A Coatomer subunit beta'; 99.9 4E-24 1.4E-28 219.9 35.5 251 60-490 11-269 (304)
8 4h5i_A Guanine nucleotide-exch 99.9 3.8E-24 1.3E-28 227.0 33.5 227 87-480 101-343 (365)
9 1vyh_C Platelet-activating fac 99.9 3.6E-24 1.2E-28 230.3 33.7 258 60-478 148-409 (410)
10 4g56_B MGC81050 protein; prote 99.9 1.2E-24 4.1E-29 229.9 29.4 245 61-484 93-347 (357)
11 3frx_A Guanine nucleotide-bind 99.9 2E-23 6.8E-28 216.4 36.4 267 59-480 14-317 (319)
12 4gqb_B Methylosome protein 50; 99.9 3.4E-24 1.2E-28 226.3 29.2 260 61-502 29-310 (344)
13 2pm7_B Protein transport prote 99.9 2.4E-23 8.4E-28 213.3 34.4 263 59-482 6-287 (297)
14 2pbi_B Guanine nucleotide-bind 99.9 3.8E-23 1.3E-27 217.9 36.0 258 60-494 62-329 (354)
15 1got_B GT-beta; complex (GTP-b 99.9 6.7E-23 2.3E-27 214.1 35.7 236 61-477 96-340 (340)
16 1erj_A Transcriptional repress 99.9 1.6E-22 5.6E-27 215.6 34.8 262 61-492 63-353 (393)
17 4ery_A WD repeat-containing pr 99.9 5.6E-22 1.9E-26 202.9 37.1 255 59-493 20-281 (312)
18 2xzm_R RACK1; ribosome, transl 99.9 4.6E-22 1.6E-26 207.7 37.2 259 60-482 19-287 (343)
19 2ynn_A Coatomer subunit beta'; 99.9 9.6E-23 3.3E-27 209.6 29.9 220 103-495 5-232 (304)
20 2pbi_B Guanine nucleotide-bind 99.9 5E-22 1.7E-26 209.4 36.0 235 63-477 107-354 (354)
21 3iz6_a 40S ribosomal protein R 99.9 3.5E-22 1.2E-26 212.1 33.4 275 60-480 64-375 (380)
22 3fm0_A Protein CIAO1; WDR39,SG 99.9 5.1E-22 1.7E-26 208.1 33.7 257 61-481 14-284 (345)
23 1erj_A Transcriptional repress 99.9 8.9E-22 3E-26 209.9 35.6 243 65-481 126-390 (393)
24 4gga_A P55CDC, cell division c 99.9 9.2E-22 3.1E-26 211.2 35.4 273 81-483 116-398 (420)
25 1nr0_A Actin interacting prote 99.9 4.6E-22 1.6E-26 224.9 34.0 257 60-481 57-356 (611)
26 3bg1_A Protein SEC13 homolog; 99.9 8.5E-23 2.9E-27 211.4 25.6 267 59-482 10-295 (316)
27 3k26_A Polycomb protein EED; W 99.9 1.7E-22 5.6E-27 208.2 26.4 274 60-479 67-365 (366)
28 3f3f_A Nucleoporin SEH1; struc 99.9 2.3E-21 7.9E-26 196.4 33.4 278 59-485 8-342 (351)
29 1nr0_A Actin interacting prote 99.9 6.7E-22 2.3E-26 223.6 32.7 241 60-482 16-272 (611)
30 2ymu_A WD-40 repeat protein; u 99.9 2.1E-21 7.1E-26 214.6 35.5 230 62-477 344-577 (577)
31 3zwl_B Eukaryotic translation 99.9 5.9E-21 2E-25 196.4 36.0 264 59-496 29-320 (369)
32 2ymu_A WD-40 repeat protein; u 99.9 3.2E-21 1.1E-25 213.2 35.2 249 61-496 302-554 (577)
33 3jrp_A Fusion protein of prote 99.9 2.2E-21 7.7E-26 200.7 31.7 263 59-482 8-289 (379)
34 2hes_X YDR267CP; beta-propelle 99.9 1.5E-21 5.1E-26 203.3 30.5 245 61-480 57-328 (330)
35 1gxr_A ESG1, transducin-like e 99.9 9.9E-21 3.4E-25 192.6 33.8 240 60-482 49-298 (337)
36 4ggc_A P55CDC, cell division c 99.9 2.1E-20 7.1E-25 189.4 35.8 270 81-480 36-315 (318)
37 3mmy_A MRNA export factor; mRN 99.9 1.5E-21 5E-26 200.8 27.7 289 59-480 36-346 (368)
38 4a11_B DNA excision repair pro 99.9 1.4E-20 4.8E-25 196.7 35.5 268 60-485 41-370 (408)
39 2hes_X YDR267CP; beta-propelle 99.9 9E-21 3.1E-25 197.4 33.7 246 60-479 12-279 (330)
40 1r5m_A SIR4-interacting protei 99.9 1.4E-21 4.9E-26 205.0 27.8 295 61-479 107-424 (425)
41 3fm0_A Protein CIAO1; WDR39,SG 99.9 9.5E-21 3.2E-25 198.4 33.6 250 59-481 58-336 (345)
42 1sq9_A Antiviral protein SKI8; 99.9 4.5E-21 1.6E-25 201.1 30.5 251 59-488 13-330 (397)
43 4ery_A WD repeat-containing pr 99.9 1.9E-20 6.5E-25 191.5 33.4 185 180-490 45-233 (312)
44 3vl1_A 26S proteasome regulato 99.9 4E-21 1.4E-25 203.5 29.2 252 80-481 109-366 (420)
45 4aez_A CDC20, WD repeat-contai 99.9 1E-20 3.4E-25 201.5 32.2 271 81-482 104-382 (401)
46 3vl1_A 26S proteasome regulato 99.9 4.4E-21 1.5E-25 203.2 28.8 235 80-489 68-332 (420)
47 1gxr_A ESG1, transducin-like e 99.9 7.6E-20 2.6E-24 186.0 36.8 237 60-479 95-336 (337)
48 1p22_A F-BOX/WD-repeat protein 99.9 1.8E-20 6.3E-25 201.7 33.6 232 59-481 130-366 (435)
49 1sq9_A Antiviral protein SKI8; 99.9 9E-21 3.1E-25 198.9 30.3 249 60-480 60-395 (397)
50 4g56_B MGC81050 protein; prote 99.9 1.2E-21 4.1E-26 206.9 23.8 261 60-501 40-321 (357)
51 2pm9_A Protein WEB1, protein t 99.9 3E-21 1E-25 203.5 26.2 254 60-485 65-342 (416)
52 4aow_A Guanine nucleotide-bind 99.9 9.9E-20 3.4E-24 186.1 36.3 262 60-480 36-337 (340)
53 3odt_A Protein DOA1; ubiquitin 99.9 4.4E-20 1.5E-24 186.1 32.4 275 59-481 15-297 (313)
54 2xzm_R RACK1; ribosome, transl 99.9 3.4E-20 1.2E-24 193.5 32.0 240 60-480 74-340 (343)
55 3v7d_B Cell division control p 99.9 8.3E-20 2.8E-24 196.9 35.4 253 60-482 119-383 (464)
56 3iz6_a 40S ribosomal protein R 99.9 1.6E-21 5.3E-26 207.1 21.3 267 93-487 49-336 (380)
57 2pm9_A Protein WEB1, protein t 99.9 7.3E-22 2.5E-26 208.2 18.5 260 61-480 112-414 (416)
58 1r5m_A SIR4-interacting protei 99.9 3E-20 1E-24 194.9 30.6 265 62-494 45-333 (425)
59 3dm0_A Maltose-binding peripla 99.9 4.3E-20 1.5E-24 211.3 34.2 248 59-482 379-634 (694)
60 3i2n_A WD repeat-containing pr 99.9 1.5E-20 5.2E-25 193.2 26.6 269 60-481 63-354 (357)
61 3gre_A Serine/threonine-protei 99.9 1.1E-20 3.8E-25 202.1 26.4 254 59-490 60-369 (437)
62 3k26_A Polycomb protein EED; W 99.9 1.1E-20 3.6E-25 194.7 25.2 262 59-482 15-320 (366)
63 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1.4E-19 4.8E-24 194.8 33.8 276 58-481 155-443 (445)
64 1k8k_C P40, ARP2/3 complex 41 99.9 8.2E-20 2.8E-24 189.1 30.5 239 61-480 7-274 (372)
65 3ei3_B DNA damage-binding prot 99.9 3.7E-19 1.3E-23 186.9 35.4 260 59-480 70-382 (383)
66 3dm0_A Maltose-binding peripla 99.9 1.2E-19 4E-24 207.7 33.0 227 80-481 442-694 (694)
67 3frx_A Guanine nucleotide-bind 99.9 1.9E-19 6.4E-24 186.5 31.3 181 179-487 39-234 (319)
68 1yfq_A Cell cycle arrest prote 99.9 7.4E-20 2.5E-24 187.6 27.5 255 59-490 8-292 (342)
69 1p22_A F-BOX/WD-repeat protein 99.9 6.2E-20 2.1E-24 197.6 28.0 239 61-481 172-415 (435)
70 2j04_B YDR362CP, TAU91; beta p 99.9 5.6E-20 1.9E-24 205.7 28.3 264 62-479 207-516 (524)
71 2ovr_B FBW7, F-BOX/WD repeat p 99.9 7.7E-19 2.6E-23 189.1 36.2 226 81-489 130-357 (445)
72 3zwl_B Eukaryotic translation 99.9 5.2E-19 1.8E-23 181.8 33.2 244 60-480 72-346 (369)
73 3v7d_B Cell division control p 99.9 3.5E-19 1.2E-23 192.0 33.2 238 60-481 160-422 (464)
74 1pgu_A Actin interacting prote 99.9 1.3E-19 4.3E-24 200.6 30.1 332 64-493 208-586 (615)
75 3dw8_B Serine/threonine-protei 99.9 3.8E-20 1.3E-24 197.2 24.5 108 361-490 245-382 (447)
76 2w18_A PALB2, fancn, partner a 99.9 3E-19 1E-23 189.1 30.8 271 81-478 54-355 (356)
77 3mkq_A Coatomer beta'-subunit; 99.9 4.6E-19 1.6E-23 204.0 34.8 249 60-491 11-270 (814)
78 2aq5_A Coronin-1A; WD40 repeat 99.9 8.8E-20 3E-24 193.8 26.6 233 86-490 53-310 (402)
79 2j04_B YDR362CP, TAU91; beta p 99.9 1.9E-20 6.5E-25 209.6 21.9 233 83-480 176-428 (524)
80 1pgu_A Actin interacting prote 99.9 3.8E-19 1.3E-23 196.8 31.9 252 57-490 13-293 (615)
81 3dwl_C Actin-related protein 2 99.9 7.1E-21 2.4E-25 199.0 16.8 239 62-480 11-281 (377)
82 3sfz_A APAF-1, apoptotic pepti 99.8 3.9E-19 1.3E-23 215.1 34.3 355 60-502 613-1014(1249)
83 4e54_B DNA damage-binding prot 99.8 5.4E-20 1.8E-24 198.5 23.5 261 61-480 118-430 (435)
84 3odt_A Protein DOA1; ubiquitin 99.8 3.9E-18 1.3E-22 171.9 35.5 214 99-493 6-227 (313)
85 3i2n_A WD repeat-containing pr 99.8 5.6E-19 1.9E-23 181.5 29.6 258 60-482 16-293 (357)
86 1k8k_C P40, ARP2/3 complex 41 99.8 4.8E-19 1.7E-23 183.3 29.3 255 60-480 50-361 (372)
87 2pm7_B Protein transport prote 99.8 4.3E-19 1.5E-23 181.7 27.8 181 179-480 30-238 (297)
88 3bg1_A Protein SEC13 homolog; 99.8 1.4E-19 4.9E-24 187.1 22.4 208 104-480 6-247 (316)
89 2xyi_A Probable histone-bindin 99.8 7.2E-19 2.5E-23 189.6 28.4 240 82-480 143-410 (430)
90 2vdu_B TRNA (guanine-N(7)-)-me 99.8 1.6E-18 5.6E-23 187.5 30.9 177 179-478 124-337 (450)
91 1yfq_A Cell cycle arrest prote 99.8 1.3E-18 4.5E-23 178.3 28.3 237 60-478 54-322 (342)
92 3sfz_A APAF-1, apoptotic pepti 99.8 1E-19 3.4E-24 220.3 22.7 256 63-492 962-1219(1249)
93 3jro_A Fusion protein of prote 99.8 3.3E-19 1.1E-23 207.0 26.0 264 59-482 6-287 (753)
94 4h5i_A Guanine nucleotide-exch 99.8 9.5E-19 3.2E-23 185.4 26.7 140 365-521 197-342 (365)
95 3dwl_C Actin-related protein 2 99.8 2.7E-20 9.3E-25 194.5 14.5 202 180-494 33-254 (377)
96 3vu4_A KMHSV2; beta-propeller 99.8 7.3E-19 2.5E-23 185.2 25.0 115 361-481 213-337 (355)
97 3jrp_A Fusion protein of prote 99.8 1.5E-18 5.2E-23 179.4 26.1 212 103-482 3-242 (379)
98 3lrv_A PRE-mRNA-splicing facto 99.8 7.5E-19 2.6E-23 183.1 23.8 101 361-481 188-293 (343)
99 3gre_A Serine/threonine-protei 99.8 5.2E-19 1.8E-23 189.1 22.6 111 361-492 188-304 (437)
100 4a11_B DNA excision repair pro 99.8 7.1E-19 2.4E-23 183.7 22.8 237 87-482 20-278 (408)
101 3ei3_B DNA damage-binding prot 99.8 8.2E-18 2.8E-22 176.6 30.8 189 180-491 96-293 (383)
102 4e54_B DNA damage-binding prot 99.8 5.5E-19 1.9E-23 190.6 22.3 111 361-491 227-338 (435)
103 4gq1_A NUP37; propeller, trans 99.8 9.4E-19 3.2E-23 186.9 23.5 259 81-481 102-390 (393)
104 2aq5_A Coronin-1A; WD40 repeat 99.8 7.3E-18 2.5E-22 179.0 28.0 247 60-481 79-343 (402)
105 3mkq_A Coatomer beta'-subunit; 99.8 7.2E-18 2.5E-22 194.1 27.8 219 103-494 5-231 (814)
106 3f3f_A Nucleoporin SEH1; struc 99.8 1.4E-17 4.8E-22 168.4 26.3 101 361-481 130-250 (351)
107 2oaj_A Protein SNI1; WD40 repe 99.8 3.4E-17 1.1E-21 194.3 33.8 239 60-479 15-311 (902)
108 4aez_A CDC20, WD repeat-contai 99.8 3.7E-17 1.3E-21 173.9 30.5 177 179-484 112-297 (401)
109 1l0q_A Surface layer protein; 99.8 5E-16 1.7E-20 162.9 36.8 246 62-490 31-285 (391)
110 3bws_A Protein LP49; two-domai 99.8 3.5E-16 1.2E-20 166.3 35.6 237 62-480 169-432 (433)
111 1l0q_A Surface layer protein; 99.8 2.8E-16 9.5E-21 164.8 33.7 232 82-490 3-243 (391)
112 4aow_A Guanine nucleotide-bind 99.8 1.7E-16 5.8E-21 162.1 30.6 182 179-487 60-253 (340)
113 4ggc_A P55CDC, cell division c 99.8 4.8E-17 1.6E-21 164.5 25.7 237 179-502 44-295 (318)
114 4gga_A P55CDC, cell division c 99.8 4E-17 1.4E-21 175.0 26.1 255 179-520 124-393 (420)
115 2oaj_A Protein SNI1; WD40 repe 99.8 3.9E-17 1.3E-21 193.8 26.0 175 179-481 38-243 (902)
116 3dw8_B Serine/threonine-protei 99.8 6.2E-17 2.1E-21 172.4 24.6 111 363-491 196-327 (447)
117 3mmy_A MRNA export factor; mRN 99.8 9.7E-17 3.3E-21 164.7 24.9 275 96-502 25-326 (368)
118 3lrv_A PRE-mRNA-splicing facto 99.8 2.7E-17 9.4E-22 171.2 20.6 105 361-487 145-251 (343)
119 2xyi_A Probable histone-bindin 99.8 1.1E-16 3.8E-21 172.5 25.0 101 361-482 250-355 (430)
120 3jro_A Fusion protein of prote 99.7 2E-16 6.9E-21 183.6 25.1 210 105-482 3-240 (753)
121 2vdu_B TRNA (guanine-N(7)-)-me 99.7 2.4E-15 8.1E-20 162.7 31.0 246 61-485 101-396 (450)
122 2w18_A PALB2, fancn, partner a 99.7 4.3E-16 1.5E-20 164.9 23.8 54 361-415 301-355 (356)
123 2hqs_A Protein TOLB; TOLB, PAL 99.7 5.3E-15 1.8E-19 159.6 31.7 246 81-502 144-408 (415)
124 4gq1_A NUP37; propeller, trans 99.7 4.9E-16 1.7E-20 165.8 22.5 63 178-240 109-188 (393)
125 3bws_A Protein LP49; two-domai 99.7 1.2E-14 4E-19 154.5 27.2 228 81-480 134-390 (433)
126 2j04_A TAU60, YPL007P, hypothe 99.6 3.5E-15 1.2E-19 167.2 19.8 92 362-479 199-296 (588)
127 2j04_A TAU60, YPL007P, hypothe 99.6 3.3E-14 1.1E-18 159.3 26.5 237 62-469 85-350 (588)
128 1pby_B Quinohemoprotein amine 99.6 5.9E-13 2E-17 135.3 29.1 93 366-483 220-313 (337)
129 2hqs_A Protein TOLB; TOLB, PAL 99.6 3.1E-13 1E-17 145.7 27.8 172 180-480 159-344 (415)
130 2ojh_A Uncharacterized protein 99.6 4.3E-13 1.5E-17 132.6 24.6 217 87-481 19-259 (297)
131 3vgz_A Uncharacterized protein 99.5 2.3E-11 7.9E-16 124.7 34.8 174 180-481 111-304 (353)
132 1ri6_A Putative isomerase YBHE 99.5 9.3E-12 3.2E-16 126.7 31.2 104 363-482 149-264 (343)
133 1ri6_A Putative isomerase YBHE 99.5 4E-12 1.4E-16 129.4 28.4 103 363-484 198-312 (343)
134 1nir_A Nitrite reductase; hemo 99.5 2.3E-12 7.7E-17 144.5 28.6 282 79-486 189-520 (543)
135 1nir_A Nitrite reductase; hemo 99.5 3.8E-12 1.3E-16 142.7 30.1 234 81-480 149-402 (543)
136 3u4y_A Uncharacterized protein 99.5 8.2E-12 2.8E-16 127.6 29.4 246 67-480 44-304 (331)
137 3u4y_A Uncharacterized protein 99.5 7.6E-12 2.6E-16 127.8 28.2 228 81-480 10-252 (331)
138 2ecf_A Dipeptidyl peptidase IV 99.5 1.2E-12 3.9E-17 149.8 23.5 105 366-492 264-379 (741)
139 2ojh_A Uncharacterized protein 99.5 2.9E-12 1E-16 126.6 23.2 181 178-483 20-207 (297)
140 1jmx_B Amine dehydrogenase; ox 99.5 7E-12 2.4E-16 128.2 25.2 88 369-481 237-326 (349)
141 3hfq_A Uncharacterized protein 99.5 2.3E-11 8E-16 125.7 28.2 104 363-485 207-322 (347)
142 3scy_A Hypothetical bacterial 99.5 4E-11 1.4E-15 124.8 30.1 105 363-485 231-342 (361)
143 2z3z_A Dipeptidyl aminopeptida 99.5 2.3E-12 7.9E-17 146.7 21.8 226 180-491 101-354 (706)
144 2oit_A Nucleoporin 214KDA; NH2 99.4 1E-11 3.5E-16 135.1 24.8 102 361-483 168-281 (434)
145 1xfd_A DIP, dipeptidyl aminope 99.4 4.8E-12 1.6E-16 144.1 19.5 275 83-479 30-341 (723)
146 1k32_A Tricorn protease; prote 99.4 3.2E-11 1.1E-15 144.6 25.0 105 364-492 357-472 (1045)
147 2ecf_A Dipeptidyl peptidase IV 99.4 2.9E-11 1E-15 138.2 22.9 99 363-483 310-416 (741)
148 3vgz_A Uncharacterized protein 99.4 1.2E-10 4.1E-15 119.3 24.9 189 179-481 68-263 (353)
149 3o4h_A Acylamino-acid-releasin 99.3 2.2E-11 7.5E-16 135.8 18.0 91 365-478 175-274 (582)
150 1jof_A Carboxy-CIS,CIS-muconat 99.3 7.7E-10 2.6E-14 116.2 28.3 104 364-482 166-293 (365)
151 2z3z_A Dipeptidyl aminopeptida 99.3 3.3E-11 1.1E-15 137.1 19.1 100 364-484 283-393 (706)
152 2oit_A Nucleoporin 214KDA; NH2 99.3 1.4E-11 4.8E-16 134.0 15.3 97 361-479 114-222 (434)
153 3hfq_A Uncharacterized protein 99.3 2E-09 6.7E-14 111.1 30.1 104 363-482 160-273 (347)
154 3scy_A Hypothetical bacterial 99.3 1.5E-09 5.1E-14 112.9 29.3 104 363-483 175-294 (361)
155 1jof_A Carboxy-CIS,CIS-muconat 99.3 1E-09 3.5E-14 115.3 26.0 78 387-481 255-342 (365)
156 1pby_B Quinohemoprotein amine 99.3 8.5E-10 2.9E-14 111.8 23.8 56 180-235 11-73 (337)
157 1k32_A Tricorn protease; prote 99.2 3.1E-10 1.1E-14 136.1 22.7 95 363-479 398-501 (1045)
158 1xfd_A DIP, dipeptidyl aminope 99.2 1.2E-10 4.2E-15 132.5 17.9 52 179-230 36-103 (723)
159 1z68_A Fibroblast activation p 99.2 7.5E-11 2.6E-15 134.6 12.8 283 82-483 28-347 (719)
160 3o4h_A Acylamino-acid-releasin 99.2 4.4E-10 1.5E-14 125.3 18.1 101 367-494 134-240 (582)
161 1jmx_B Amine dehydrogenase; ox 99.1 4.7E-09 1.6E-13 107.0 23.1 57 180-236 21-83 (349)
162 1z68_A Fibroblast activation p 99.1 8.4E-10 2.9E-14 125.9 14.9 51 180-230 36-102 (719)
163 3pe7_A Oligogalacturonate lyas 99.1 2.9E-08 9.9E-13 103.5 25.0 127 79-229 91-227 (388)
164 3pe7_A Oligogalacturonate lyas 99.0 5.2E-08 1.8E-12 101.5 25.1 97 365-480 216-329 (388)
165 1q7f_A NHL, brain tumor CG1071 99.0 1.6E-06 5.3E-11 86.8 34.9 96 363-480 183-280 (286)
166 4a5s_A Dipeptidyl peptidase 4 99.0 1.3E-08 4.4E-13 117.5 20.8 110 82-231 29-145 (740)
167 2oiz_A Aromatic amine dehydrog 99.0 9.9E-08 3.4E-12 100.8 24.2 54 180-233 81-146 (361)
168 4a5s_A Dipeptidyl peptidase 4 98.9 2.1E-08 7.2E-13 115.6 20.2 52 180-231 36-105 (740)
169 3azo_A Aminopeptidase; POP fam 98.9 1.2E-07 4.2E-12 106.7 24.4 100 365-484 217-327 (662)
170 3dsm_A Uncharacterized protein 98.9 1.6E-06 5.6E-11 89.9 29.2 180 180-479 105-301 (328)
171 2gop_A Trilobed protease; beta 98.8 6.3E-07 2.2E-11 91.9 24.5 86 366-484 201-294 (347)
172 2gop_A Trilobed protease; beta 98.8 1.5E-06 5.1E-11 89.1 27.3 97 364-492 243-341 (347)
173 3c5m_A Oligogalacturonate lyas 98.8 6.4E-08 2.2E-12 100.6 17.1 102 365-489 264-391 (396)
174 3dsm_A Uncharacterized protein 98.7 1.6E-06 5.5E-11 89.9 24.4 177 180-480 64-253 (328)
175 3fvz_A Peptidyl-glycine alpha- 98.7 5.3E-06 1.8E-10 85.7 26.8 96 363-480 216-322 (329)
176 3c5m_A Oligogalacturonate lyas 98.6 9.4E-07 3.2E-11 91.7 18.5 97 363-480 166-273 (396)
177 3e5z_A Putative gluconolactona 98.6 1.6E-05 5.5E-10 80.0 25.9 90 363-481 191-285 (296)
178 1xip_A Nucleoporin NUP159; bet 98.6 1.8E-06 6.3E-11 92.8 19.5 80 362-466 143-230 (388)
179 2xdw_A Prolyl endopeptidase; a 98.6 1.8E-05 6.2E-10 90.5 28.9 96 364-480 310-414 (710)
180 3azo_A Aminopeptidase; POP fam 98.6 3.9E-06 1.3E-10 94.4 22.7 97 366-484 266-371 (662)
181 3no2_A Uncharacterized protein 98.6 6.3E-05 2.1E-09 76.4 29.5 99 363-483 144-254 (276)
182 2dg1_A DRP35, lactonase; beta 98.6 5.3E-05 1.8E-09 77.2 28.9 73 386-479 233-313 (333)
183 1qks_A Cytochrome CD1 nitrite 98.5 0.0001 3.6E-09 82.9 33.3 57 180-236 218-284 (567)
184 1q7f_A NHL, brain tumor CG1071 98.5 1.7E-05 5.7E-10 79.2 23.7 93 363-478 140-236 (286)
185 1qks_A Cytochrome CD1 nitrite 98.5 3.1E-05 1.1E-09 87.2 25.8 176 180-481 177-374 (567)
186 3no2_A Uncharacterized protein 98.4 1.1E-05 3.9E-10 81.9 19.7 169 179-479 14-194 (276)
187 2oiz_A Aromatic amine dehydrog 98.4 3.8E-05 1.3E-09 80.8 23.9 57 179-236 30-99 (361)
188 2mad_H Methylamine dehydrogena 98.4 0.00065 2.2E-08 72.1 33.0 98 363-482 232-352 (373)
189 1pjx_A Dfpase, DIISOPROPYLFLUO 98.4 0.00027 9.3E-09 70.8 28.0 96 364-481 197-300 (314)
190 2xdw_A Prolyl endopeptidase; a 98.4 5.7E-05 2E-09 86.4 25.5 99 364-480 258-366 (710)
191 1rwi_B Serine/threonine-protei 98.3 0.00011 3.7E-09 72.2 22.4 95 364-480 170-264 (270)
192 3sjl_D Methylamine dehydrogena 98.3 0.00063 2.2E-08 72.9 29.6 57 180-236 109-178 (386)
193 2dg1_A DRP35, lactonase; beta 98.3 0.00029 1E-08 71.6 25.7 100 364-478 161-261 (333)
194 1xip_A Nucleoporin NUP159; bet 98.3 9.4E-06 3.2E-10 87.2 15.1 90 363-482 104-193 (388)
195 3fvz_A Peptidyl-glycine alpha- 98.2 3.3E-05 1.1E-09 79.6 18.4 97 363-480 164-277 (329)
196 2ece_A 462AA long hypothetical 98.2 0.00087 3E-08 73.1 29.8 58 179-236 163-246 (462)
197 2bkl_A Prolyl endopeptidase; m 98.2 0.00012 4E-09 83.7 23.5 97 366-483 253-352 (695)
198 1yr2_A Prolyl oligopeptidase; 98.1 0.00029 1E-08 81.0 25.3 96 364-480 340-441 (741)
199 3e5z_A Putative gluconolactona 98.1 0.00023 7.9E-09 71.5 20.7 92 365-479 153-245 (296)
200 2bkl_A Prolyl endopeptidase; m 98.1 0.00017 6E-09 82.2 20.8 97 363-480 293-397 (695)
201 1yr2_A Prolyl oligopeptidase; 98.0 0.00077 2.6E-08 77.5 26.3 99 364-483 293-396 (741)
202 3g4e_A Regucalcin; six bladed 98.0 0.003 1E-07 63.8 27.2 85 364-470 170-262 (297)
203 2ghs_A AGR_C_1268P; regucalcin 98.0 0.0063 2.2E-07 62.5 29.7 85 364-471 200-293 (326)
204 3hrp_A Uncharacterized protein 98.0 0.004 1.4E-07 66.7 29.1 71 387-479 324-409 (409)
205 3g4e_A Regucalcin; six bladed 98.0 0.0018 6E-08 65.6 24.9 51 180-231 35-86 (297)
206 2iwa_A Glutamine cyclotransfer 97.9 0.0037 1.3E-07 63.5 25.8 175 180-481 44-238 (266)
207 3c75_H MADH, methylamine dehyd 97.8 0.00076 2.6E-08 73.2 19.9 56 180-236 99-167 (426)
208 1mda_H Methylamine dehydrogena 97.8 0.0011 3.9E-08 70.4 20.7 54 181-236 47-114 (368)
209 2z2n_A Virginiamycin B lyase; 97.8 0.032 1.1E-06 54.7 32.0 92 364-478 161-253 (299)
210 3nol_A Glutamine cyclotransfer 97.8 0.0037 1.3E-07 63.4 22.2 57 180-236 65-125 (262)
211 2hz6_A Endoplasmic reticulum t 97.8 1.1E-05 3.8E-10 85.4 3.6 91 362-480 99-192 (369)
212 1rwi_B Serine/threonine-protei 97.7 0.00076 2.6E-08 66.1 16.1 94 364-479 128-221 (270)
213 3iuj_A Prolyl endopeptidase; h 97.7 0.0076 2.6E-07 68.8 26.4 94 364-480 304-405 (693)
214 3nok_A Glutaminyl cyclase; bet 97.6 0.0036 1.2E-07 63.6 19.8 56 180-236 75-134 (268)
215 1kb0_A Quinohemoprotein alcoho 97.6 0.0031 1.1E-07 72.2 21.9 47 439-488 469-515 (677)
216 3hrp_A Uncharacterized protein 97.6 0.0068 2.3E-07 64.9 22.1 96 364-479 239-353 (409)
217 2ece_A 462AA long hypothetical 97.6 0.0039 1.3E-07 68.0 20.1 100 362-480 161-289 (462)
218 2mad_H Methylamine dehydrogena 97.5 0.015 5.3E-07 61.4 23.0 55 181-236 48-115 (373)
219 1pjx_A Dfpase, DIISOPROPYLFLUO 97.4 0.011 3.8E-07 58.8 20.5 99 364-479 152-255 (314)
220 2qe8_A Uncharacterized protein 97.4 0.0034 1.2E-07 65.0 16.7 58 180-237 93-164 (343)
221 3nok_A Glutaminyl cyclase; bet 97.4 0.01 3.6E-07 60.2 19.7 57 180-236 116-173 (268)
222 3q7m_A Lipoprotein YFGL, BAMB; 97.4 0.1 3.5E-06 53.8 28.1 91 363-480 247-337 (376)
223 2z2n_A Virginiamycin B lyase; 97.4 0.036 1.2E-06 54.3 23.4 92 364-478 119-211 (299)
224 3sjl_D Methylamine dehydrogena 97.4 0.00056 1.9E-08 73.3 10.6 98 364-483 58-172 (386)
225 3mbr_X Glutamine cyclotransfer 97.4 0.05 1.7E-06 54.5 24.0 56 180-235 43-102 (243)
226 2ghs_A AGR_C_1268P; regucalcin 97.3 0.063 2.2E-06 54.9 25.2 97 365-478 161-258 (326)
227 1kb0_A Quinohemoprotein alcoho 97.2 0.013 4.5E-07 67.0 20.3 58 180-237 87-157 (677)
228 2qc5_A Streptogramin B lactona 97.2 0.19 6.6E-06 49.0 30.6 92 364-478 166-258 (300)
229 1yiq_A Quinohemoprotein alcoho 97.2 0.042 1.4E-06 63.0 24.1 41 439-482 467-507 (689)
230 3nol_A Glutamine cyclotransfer 97.2 0.044 1.5E-06 55.4 21.4 57 180-236 107-164 (262)
231 3iuj_A Prolyl endopeptidase; h 97.2 0.0083 2.9E-07 68.5 17.9 94 364-479 258-358 (693)
232 1mda_H Methylamine dehydrogena 97.1 0.0012 4.1E-08 70.2 9.1 94 366-480 47-158 (368)
233 1yiq_A Quinohemoprotein alcoho 97.1 0.032 1.1E-06 63.9 21.5 57 180-236 80-149 (689)
234 3q7m_A Lipoprotein YFGL, BAMB; 97.0 0.4 1.4E-05 49.3 31.5 57 180-236 113-171 (376)
235 3mbr_X Glutamine cyclotransfer 96.9 0.17 5.9E-06 50.5 22.9 57 180-236 85-142 (243)
236 2qc5_A Streptogramin B lactona 96.9 0.19 6.3E-06 49.1 23.2 92 364-478 124-216 (300)
237 3hxj_A Pyrrolo-quinoline quino 96.9 0.079 2.7E-06 53.0 20.6 92 364-481 234-325 (330)
238 2iwa_A Glutamine cyclotransfer 96.9 0.084 2.9E-06 53.5 20.6 95 363-480 84-181 (266)
239 3c75_H MADH, methylamine dehyd 96.9 0.0032 1.1E-07 68.3 10.3 97 365-483 99-212 (426)
240 2hz6_A Endoplasmic reticulum t 96.8 0.00023 7.9E-09 75.1 0.9 88 362-480 56-149 (369)
241 1kv9_A Type II quinohemoprotei 96.8 0.076 2.6E-06 60.6 21.7 57 180-236 76-145 (668)
242 1kv9_A Type II quinohemoprotei 96.6 0.3 1E-05 55.6 24.5 40 439-481 450-489 (668)
243 3dr2_A Exported gluconolactona 96.5 0.16 5.6E-06 51.0 19.8 93 364-478 168-265 (305)
244 2ad6_A Methanol dehydrogenase 96.5 0.18 6E-06 56.4 21.6 27 454-480 468-494 (571)
245 1fwx_A Nitrous oxide reductase 96.5 0.1 3.6E-06 58.6 19.4 105 365-480 254-361 (595)
246 3amr_A 3-phytase; beta-propell 96.5 0.38 1.3E-05 50.7 22.4 101 363-479 151-262 (355)
247 2qe8_A Uncharacterized protein 96.3 0.043 1.5E-06 56.5 13.6 107 364-479 92-223 (343)
248 1flg_A Protein (quinoprotein e 95.3 0.59 2E-05 52.3 18.9 83 363-469 464-549 (582)
249 3ei3_A DNA damage-binding prot 95.1 8.4 0.00029 46.7 31.6 96 365-481 904-1000(1158)
250 2xzh_A Clathrin heavy chain 1; 95.1 1 3.5E-05 47.2 18.3 195 364-606 86-290 (365)
251 2xzh_A Clathrin heavy chain 1; 95.0 4.1 0.00014 42.6 25.6 48 180-227 87-135 (365)
252 3dr2_A Exported gluconolactona 94.9 0.14 4.7E-06 51.5 11.2 102 362-484 64-180 (305)
253 1w6s_A Methanol dehydrogenase 94.8 2.4 8.1E-05 47.7 22.0 23 458-480 481-503 (599)
254 3hxj_A Pyrrolo-quinoline quino 94.6 0.92 3.1E-05 45.0 16.4 87 365-477 195-281 (330)
255 1bpo_A Protein (clathrin); cla 94.5 2 6.7E-05 46.7 19.1 197 364-606 85-289 (494)
256 2xe4_A Oligopeptidase B; hydro 94.4 0.11 3.8E-06 59.9 10.0 96 364-480 200-304 (751)
257 1bpo_A Protein (clathrin); cla 94.0 8.2 0.00028 41.9 26.0 48 180-227 86-134 (494)
258 1flg_A Protein (quinoprotein e 93.7 6.4 0.00022 43.9 22.3 56 181-236 79-145 (582)
259 1fwx_A Nitrous oxide reductase 93.5 0.3 1E-05 54.9 10.9 110 362-481 172-309 (595)
260 1ijq_A LDL receptor, low-densi 92.9 8.6 0.00029 38.8 25.1 95 364-479 98-194 (316)
261 2ad6_A Methanol dehydrogenase 92.7 9.1 0.00031 42.4 21.6 57 180-236 73-143 (571)
262 1npe_A Nidogen, entactin; glyc 92.1 8.9 0.00031 37.0 24.6 95 364-479 100-197 (267)
263 1w6s_A Methanol dehydrogenase 92.1 8.7 0.0003 43.1 20.5 57 180-236 73-149 (599)
264 3v65_B Low-density lipoprotein 92.0 13 0.00045 38.7 21.4 93 366-479 182-276 (386)
265 3amr_A 3-phytase; beta-propell 91.7 5.2 0.00018 42.0 16.8 97 363-480 48-162 (355)
266 3p5b_L Low density lipoprotein 91.5 15 0.00052 38.5 23.3 94 364-479 180-276 (400)
267 1k3i_A Galactose oxidase precu 91.4 4.1 0.00014 45.7 17.0 97 365-480 369-497 (656)
268 2xe4_A Oligopeptidase B; hydro 91.4 3.6 0.00012 47.2 16.8 49 180-229 201-258 (751)
269 3pbp_A Nucleoporin NUP82; beta 90.8 2 6.7E-05 46.5 12.7 111 363-480 39-158 (452)
270 3v64_C Agrin; beta propeller, 89.7 20 0.00068 36.7 24.0 94 365-479 138-233 (349)
271 1xi4_A Clathrin heavy chain; a 89.6 10 0.00034 46.9 18.7 48 180-227 86-134 (1630)
272 1npe_A Nidogen, entactin; glyc 89.1 17 0.00057 35.0 32.6 71 386-480 167-238 (267)
273 2p4o_A Hypothetical protein; p 89.0 3.6 0.00012 41.1 12.6 80 374-478 21-100 (306)
274 3tc9_A Hypothetical hydrolase; 87.7 14 0.00049 39.2 17.0 72 388-480 228-301 (430)
275 2fp8_A Strictosidine synthase; 87.5 24 0.00082 35.0 27.0 73 388-480 231-313 (322)
276 4hw6_A Hypothetical protein, I 87.2 33 0.0011 36.3 20.3 54 363-416 248-303 (433)
277 3sre_A PON1, serum paraoxonase 86.5 4.3 0.00015 42.5 11.7 97 364-483 138-255 (355)
278 2p4o_A Hypothetical protein; p 85.5 30 0.001 34.2 20.9 70 388-478 171-240 (306)
279 4a2l_A BT_4663, two-component 85.1 57 0.0019 37.0 30.4 75 386-480 357-436 (795)
280 3tc9_A Hypothetical hydrolase; 84.4 44 0.0015 35.3 18.7 53 364-416 247-300 (430)
281 2p9w_A MAL S 1 allergenic prot 83.2 5.6 0.00019 41.4 10.5 98 363-479 98-214 (334)
282 2fp8_A Strictosidine synthase; 81.4 14 0.00049 36.7 12.8 86 363-469 163-248 (322)
283 1xi4_A Clathrin heavy chain; a 79.2 15 0.0005 45.6 13.4 107 364-491 85-198 (1630)
284 1n7d_A LDL receptor, low-densi 79.2 16 0.00054 41.6 13.4 29 388-416 542-570 (699)
285 3m0c_C LDL receptor, low-densi 79.1 99 0.0034 35.7 25.2 96 363-479 491-588 (791)
286 1n7d_A LDL receptor, low-densi 78.7 3 0.0001 47.6 7.3 94 364-479 474-570 (699)
287 4a2l_A BT_4663, two-component 78.2 97 0.0033 35.1 31.6 72 385-479 542-613 (795)
288 3kya_A Putative phosphatase; s 77.9 67 0.0023 35.0 17.4 30 386-415 310-339 (496)
289 3qqz_A Putative uncharacterize 77.8 25 0.00085 34.9 12.9 102 362-479 46-150 (255)
290 2p9w_A MAL S 1 allergenic prot 77.7 50 0.0017 34.2 15.5 29 387-416 186-214 (334)
291 3zwu_A Alkaline phosphatase PH 77.5 5.6 0.00019 44.7 8.7 61 388-467 478-548 (592)
292 3sov_A LRP-6, low-density lipo 76.1 69 0.0024 32.3 22.0 174 180-479 13-196 (318)
293 3v9f_A Two-component system se 73.9 1.2E+02 0.0042 34.1 25.4 72 385-479 494-567 (781)
294 1k3i_A Galactose oxidase precu 72.5 15 0.0005 41.1 10.7 94 366-480 220-323 (656)
295 4a9v_A PHOX; hydrolase, beta-p 68.9 12 0.00042 41.7 8.7 61 388-467 478-548 (592)
296 2vpj_A Kelch-like protein 12; 67.7 92 0.0031 30.1 17.8 50 180-229 78-139 (301)
297 3v9f_A Two-component system se 67.1 1.7E+02 0.0057 33.0 27.1 72 385-478 538-609 (781)
298 3qqz_A Putative uncharacterize 67.1 1E+02 0.0035 30.4 24.0 73 386-477 173-250 (255)
299 3v65_B Low-density lipoprotein 65.5 1.3E+02 0.0044 31.0 30.9 52 365-416 225-276 (386)
300 3ei3_A DNA damage-binding prot 65.0 49 0.0017 40.1 13.6 93 365-481 492-592 (1158)
301 3pbp_A Nucleoporin NUP82; beta 59.0 44 0.0015 36.0 10.4 85 384-484 123-214 (452)
302 3q6k_A 43.2 kDa salivary prote 58.8 1.1E+02 0.0038 32.1 13.5 106 364-480 122-253 (381)
303 4hw6_A Hypothetical protein, I 58.4 30 0.001 36.8 9.2 73 388-481 230-305 (433)
304 3a9g_A Putative uncharacterize 52.1 57 0.002 33.4 9.9 93 363-469 47-154 (354)
305 3s94_A LRP-6, low-density lipo 51.8 2.8E+02 0.0097 30.6 19.0 179 180-485 18-205 (619)
306 3ii7_A Kelch-like protein 7; p 51.1 1.8E+02 0.0061 28.1 17.5 50 180-229 70-129 (306)
307 2ism_A Putative oxidoreductase 50.0 68 0.0023 32.7 10.0 70 387-479 32-113 (352)
308 1zgk_A Kelch-like ECH-associat 49.9 1.9E+02 0.0065 28.1 13.8 50 180-229 39-101 (308)
309 1cru_A Protein (soluble quinop 48.4 90 0.0031 33.3 11.0 64 387-468 28-98 (454)
310 2ism_A Putative oxidoreductase 48.2 83 0.0028 32.0 10.4 91 363-469 49-154 (352)
311 1zgk_A Kelch-like ECH-associat 48.0 2E+02 0.0069 27.9 16.0 50 180-229 90-148 (308)
312 2vpj_A Kelch-like protein 12; 46.2 2.1E+02 0.0071 27.5 17.1 50 180-229 31-89 (301)
313 3sre_A PON1, serum paraoxonase 45.7 80 0.0027 32.8 9.7 50 364-416 202-251 (355)
314 2xn4_A Kelch-like protein 2; s 45.5 2.1E+02 0.0073 27.4 16.9 50 180-229 77-135 (302)
315 3das_A Putative oxidoreductase 44.4 2E+02 0.0068 29.6 12.5 30 385-415 31-60 (347)
316 2xbg_A YCF48-like protein; pho 43.5 1.3E+02 0.0044 30.0 10.8 72 383-477 160-231 (327)
317 3p5b_L Low density lipoprotein 42.9 3E+02 0.01 28.3 33.8 51 366-416 226-276 (400)
318 4a0p_A LRP6, LRP-6, low-densit 42.7 3.9E+02 0.013 29.6 24.0 95 364-480 101-197 (628)
319 3a9g_A Putative uncharacterize 41.6 1E+02 0.0035 31.5 9.8 27 386-414 29-55 (354)
320 3m0c_C LDL receptor, low-densi 41.2 4.6E+02 0.016 30.0 34.3 52 365-416 537-588 (791)
321 4asc_A Kelch repeat and BTB do 41.1 2.6E+02 0.0089 27.1 17.1 50 180-229 67-128 (315)
322 3kya_A Putative phosphatase; s 39.2 1.1E+02 0.0036 33.5 9.8 65 387-471 140-214 (496)
323 3v64_C Agrin; beta propeller, 38.2 3.2E+02 0.011 27.4 32.4 31 386-416 203-233 (349)
324 3s25_A Hypothetical 7-bladed b 30.2 4.2E+02 0.014 26.3 18.9 67 392-483 190-256 (302)
325 1cru_A Protein (soluble quinop 29.9 4E+02 0.014 28.1 12.5 20 451-470 145-164 (454)
326 3s25_A Hypothetical 7-bladed b 29.0 1.7E+02 0.0059 29.2 8.9 93 363-485 127-219 (302)
327 3das_A Putative oxidoreductase 28.4 3.9E+02 0.013 27.4 11.6 111 364-483 52-184 (347)
328 2xbg_A YCF48-like protein; pho 26.1 1.4E+02 0.0048 29.7 7.6 63 387-473 123-185 (327)
329 3q6k_A 43.2 kDa salivary prote 25.6 2E+02 0.007 30.0 8.9 56 179-234 122-197 (381)
330 4gq2_M Nucleoporin NUP120; bet 25.1 1.1E+02 0.0038 36.0 7.5 83 385-483 235-320 (950)
331 1tl2_A L10, protein (tachylect 23.8 58 0.002 32.0 3.9 64 387-477 42-113 (236)
332 1ijq_A LDL receptor, low-densi 23.6 5.2E+02 0.018 25.2 34.1 31 386-416 164-194 (316)
333 2wg3_C Hedgehog-interacting pr 21.4 6.2E+02 0.021 26.8 12.0 112 362-482 33-186 (463)
334 2g8s_A Glucose/sorbosone dehyd 20.8 3.8E+02 0.013 27.0 9.8 82 378-480 264-352 (353)
335 3sbq_A Nitrous-oxide reductase 20.6 1.9E+02 0.0065 32.3 7.5 105 366-480 299-408 (638)
336 3ii7_A Kelch-like protein 7; p 20.4 5.6E+02 0.019 24.4 16.5 50 180-229 24-81 (306)
337 1suu_A DNA gyrase subunit A; t 20.3 6.1E+02 0.021 25.2 11.1 82 386-481 151-232 (312)
No 1
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.98 E-value=1.4e-29 Score=267.22 Aligned_cols=269 Identities=18% Similarity=0.222 Sum_probs=203.1
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
..+++.|..+.|... .++|+.|.++|++|||+++.. ++...+.+.+..+.+.+.+ .+
T Consensus 16 ~~h~~~V~~v~fs~d-------g~~la~g~~~~~~iw~~~~~~---~~~~~~~~~~~~~~~~~~~-------------~~ 72 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQD-------QSCLILSTLKSFEIYNVHPVA---HIMSQEMRHLSKVRMLHRT-------------NY 72 (355)
T ss_dssp ---CCCCCEEEECTT-------SSEEEEECSSEEEEEEETTEE---EEEEEECSCCCEEEECTTS-------------SE
T ss_pred ccCCCceEEEEECCC-------CCEEEEEcCCEEEEEecCCcc---eeeeeecCCeEEEEEcCCC-------------CE
Confidence 456788999999742 457888999999999998643 4444444557777777543 56
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecCcEEEEEeCC
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLAA 218 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~~~LaV~~~~ 218 (627)
+++++ + .+++|+|||+++++.+.+++++++|.+|+++++.++++.++
T Consensus 73 ~~~~~------~---------------------------~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~ 119 (355)
T 3vu4_A 73 VAFVT------G---------------------------VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGD 119 (355)
T ss_dssp EEEEC------S---------------------------STTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETT
T ss_pred EEEEE------C---------------------------CccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcC
Confidence 66543 1 12689999999999999999999999999999999999999
Q ss_pred eEEEEeCCCC-ceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCC
Q 046828 219 QIYCFDALTL-ESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSN 297 (627)
Q Consensus 219 ~I~i~D~~t~-e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~ 297 (627)
+|++||+.++ +.++++.+ + .+.+++.+..||+++
T Consensus 120 ~i~i~d~~~~~~~~~~~~~---~-------------~~~~~~s~~~la~~s----------------------------- 154 (355)
T 3vu4_A 120 VISVFKFGNPWKRITDDIR---F-------------GGVCEFSNGLLVYSN----------------------------- 154 (355)
T ss_dssp EEEEEESSTTCCBSSCCEE---E-------------EEEEEEETTEEEEEE-----------------------------
T ss_pred EEEEEECCCCceeeEEecc---C-------------CceEEEEccEEEEeC-----------------------------
Confidence 9999999998 66655544 2 223455445555541
Q ss_pred CcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe-
Q 046828 298 GNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS- 376 (627)
Q Consensus 298 gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~- 376 (627)
+..+|.|+|||+.+++
T Consensus 155 ---------------------------------------------------------------g~~~g~v~iwd~~~~~~ 171 (355)
T 3vu4_A 155 ---------------------------------------------------------------EFNLGQIHITKLQSSGS 171 (355)
T ss_dssp ---------------------------------------------------------------SSCTTCEEEEECCC---
T ss_pred ---------------------------------------------------------------CCcCcEEEEEECCCCCc
Confidence 2357889999998765
Q ss_pred --------------E-EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 377 --------------V-ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 377 --------------~-l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
+ +..+.+|..+|.+|+|+|+|++|||++.||++|+|||+. ++ ..+.
T Consensus 172 ~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~-------~~------------~~~~ 232 (355)
T 3vu4_A 172 ATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE-------DG------------VLVR 232 (355)
T ss_dssp ---------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT-------TC------------CEEE
T ss_pred cccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC-------CC------------cEEE
Confidence 2 788999999999999999999999999999867999986 33 2677
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCCCccCCCCCCCccccccCCCC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPVLSVPWWSSPSFMINQPSFS 521 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~~~~~~~~~~~~s~~q~~~~ 521 (627)
.+++|.+...|.+++|+||+++||+++.|++|+||++....... . + .+... .+|.|+.+.|++++++++
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~---~---~----~~~~~-~~~~~~~~~~~~~~~~~~ 301 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNK---R---H----ALKGW-INMKYFQSEWSLCNFKLS 301 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCC---S---E----ETTTT-EECCCCCCSSCSEEEECC
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcc---c---c----cccce-eeccccccccceeEEEec
Confidence 78767344679999999999999999999999999997642211 0 0 01111 367899999999988873
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.96 E-value=1.7e-26 Score=240.53 Aligned_cols=262 Identities=16% Similarity=0.219 Sum_probs=195.8
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC-ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCC
Q 046828 58 SHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN-VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSH 136 (627)
Q Consensus 58 ~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~-~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~r 136 (627)
...|.+.|..+.|.... ......+++.+.|+.++|||+..... ....+..|.+.|.++.+.+..
T Consensus 28 ~~~H~~~V~~v~~~~~~--~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~------------- 92 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNK--KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL------------- 92 (321)
T ss_dssp TTSSSSCEEEEEEC---------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS-------------
T ss_pred cccCCCcEEEEEEecCC--CCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC-------------
Confidence 35678889889996421 11246788899999999999987441 122355688888888876542
Q ss_pred CEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecC--cEEE
Q 046828 137 PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP--RIVA 213 (627)
Q Consensus 137 pLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~--~~La 213 (627)
++++... .+++|++||+++++.+.++.. ...|+.++|++ ++|+
T Consensus 93 ~~l~s~s----------------------------------~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 138 (321)
T 3ow8_A 93 PIAASSS----------------------------------LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLA 138 (321)
T ss_dssp SEEEEEE----------------------------------TTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEE
T ss_pred CEEEEEe----------------------------------CCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEE
Confidence 5654322 247899999999999999985 45899999997 6888
Q ss_pred EEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 214 VGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 214 V~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
++. +++|++||+.+++..+++..+... +.. +++.++...
T Consensus 139 ~g~~dg~v~i~~~~~~~~~~~~~~~~~~-------------v~~-------~~~spdg~~-------------------- 178 (321)
T 3ow8_A 139 TGTHVGKVNIFGVESGKKEYSLDTRGKF-------------ILS-------IAYSPDGKY-------------------- 178 (321)
T ss_dssp EECTTSEEEEEETTTCSEEEEEECSSSC-------------EEE-------EEECTTSSE--------------------
T ss_pred EEcCCCcEEEEEcCCCceeEEecCCCce-------------EEE-------EEECCCCCE--------------------
Confidence 875 568999999999988888765432 222 333332100
Q ss_pred CCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI 372 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~ 372 (627)
+ +.+..||.|+|||+
T Consensus 179 -------------------l----------------------------------------------asg~~dg~i~iwd~ 193 (321)
T 3ow8_A 179 -------------------L----------------------------------------------ASGAIDGIINIFDI 193 (321)
T ss_dssp -------------------E----------------------------------------------EEEETTSCEEEEET
T ss_pred -------------------E----------------------------------------------EEEcCCCeEEEEEC
Confidence 0 02346899999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcE
Q 046828 373 VSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVI 452 (627)
Q Consensus 373 ~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I 452 (627)
.+++.+..+.+|..+|.+|+|+|+|++|++++.||+ |+|||+. .+ ..+..+ .|++. .|
T Consensus 194 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~-------~~------------~~~~~~-~~h~~-~v 251 (321)
T 3ow8_A 194 ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQ-------HA------------NLAGTL-SGHAS-WV 251 (321)
T ss_dssp TTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETT-------TC------------CEEEEE-CCCSS-CE
T ss_pred CCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECC-------Cc------------ceeEEE-cCCCC-ce
Confidence 999999999999999999999999999999999998 8999986 22 134444 66653 59
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccccccc
Q 046828 453 QDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVD 495 (627)
Q Consensus 453 ~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~ 495 (627)
.+++|+||+++|++++.|++|+||++........+..|...+.
T Consensus 252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~ 294 (321)
T 3ow8_A 252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVW 294 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEE
Confidence 9999999999999999999999999987665566667765443
No 3
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.95 E-value=1e-25 Score=237.99 Aligned_cols=240 Identities=14% Similarity=0.177 Sum_probs=176.9
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceE---EeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSE---LVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~e---lls~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.+.|..+.|.. + +++++.+.++.++|||++..+.... .+..|++.|.++.+.|.- .+
T Consensus 82 ~~~v~~~~~s~----d---~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-------------~~ 141 (344)
T 4gqb_B 82 EAGVADLTWVG----E---RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-------------TQ 141 (344)
T ss_dssp SSCEEEEEEET----T---TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-------------SE
T ss_pred CCCEEEEEEeC----C---CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-------------CE
Confidence 34577788852 2 5688888888999999998664332 234688999999987642 55
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC---cEEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP---RIVAV 214 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~---~~LaV 214 (627)
|+... .+++|++||++++++++++. +...|.+++|++ .+|++
T Consensus 142 l~sgs----------------------------------~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s 187 (344)
T 4gqb_B 142 AVSGS----------------------------------KDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLS 187 (344)
T ss_dssp EEEEE----------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEE
T ss_pred EEEEe----------------------------------CCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceee
Confidence 55422 13679999999999999998 456999999986 46777
Q ss_pred Ee-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPST 293 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~ 293 (627)
+. +++|+|||+.+++...++..+... ... .-+++.+.+.
T Consensus 188 ~s~D~~v~iwd~~~~~~~~~~~~~~~~-------------~~~-----~~~~~~p~~~---------------------- 227 (344)
T 4gqb_B 188 CSEDNRILLWDTRCPKPASQIGCSAPG-------------YLP-----TSLAWHPQQS---------------------- 227 (344)
T ss_dssp EETTSCEEEEETTSSSCEEECC----C-------------CCE-----EEEEECSSCT----------------------
T ss_pred eccccccccccccccceeeeeecceee-------------ccc-----eeeeecCCCC----------------------
Confidence 65 568999999999887766432110 001 1234433210
Q ss_pred CCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC
Q 046828 294 SPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV 373 (627)
Q Consensus 294 s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~ 373 (627)
.+ + +.+..||.|+|||+.
T Consensus 228 -----~~-----------------------------------------------------l----~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 228 -----EV-----------------------------------------------------F----VFGDENGTVSLVDTK 245 (344)
T ss_dssp -----TE-----------------------------------------------------E----EEEETTSEEEEEESC
T ss_pred -----cc-----------------------------------------------------e----EEeccCCcEEEEECC
Confidence 00 0 123578999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcE
Q 046828 374 SRSVISQFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVI 452 (627)
Q Consensus 374 s~~~l~~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I 452 (627)
+++++..+.+|..+|.+|+|+|+| ++|||+|.||+ |+|||+. .+ .+.++ +||+. .|
T Consensus 246 ~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~-------~~-------------~~~~~-~~H~~-~V 302 (344)
T 4gqb_B 246 STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSS-------LS-------------ELFRS-QAHRD-FV 302 (344)
T ss_dssp C--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTT-------CC-------------EEEEE-CCCSS-CE
T ss_pred CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECC-------CC-------------cEEEE-cCCCC-CE
Confidence 999999999999999999999998 58999999998 8999985 23 45555 67764 59
Q ss_pred EEEEEccCCC-EEEEEeCCCeEEEEEcCC
Q 046828 453 QDICFSHYSQ-WIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 453 ~sIaFSpDg~-~Las~S~dgTvhIw~i~~ 480 (627)
.+|+||||++ .|++++.||+|++|++..
T Consensus 303 ~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 303 RDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp EEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred EEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 9999999986 567899999999999964
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.95 E-value=6e-25 Score=236.34 Aligned_cols=255 Identities=13% Similarity=0.177 Sum_probs=197.1
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.|++.|..+.|.. ..+.+++.+.|+.++|||++... ....+..|.+.|..+.+.|.. .+|
T Consensus 106 gh~~~V~~~~~~p------~~~~l~s~s~Dg~i~vwd~~~~~-~~~~l~~h~~~V~~v~~~~~~-------------~~l 165 (410)
T 1vyh_C 106 GHRSPVTRVIFHP------VFSVMVSASEDATIKVWDYETGD-FERTLKGHTDSVQDISFDHSG-------------KLL 165 (410)
T ss_dssp CCSSCEEEEEECS------SSSEEEEEESSSCEEEEETTTCC-CCEEECCCSSCEEEEEECTTS-------------SEE
T ss_pred ccCCcEEEEEEcC------CCCEEEEEeCCCeEEEEECCCCc-EEEEEeccCCcEEEEEEcCCC-------------CEE
Confidence 3667888888863 23677888888999999999855 456677789999999987542 566
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL 216 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~ 216 (627)
+..+ .+++|+|||+++++.++++. +...|.+++|++ +.|+++.
T Consensus 166 ~sgs----------------------------------~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s 211 (410)
T 1vyh_C 166 ASCS----------------------------------ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 211 (410)
T ss_dssp EEEE----------------------------------TTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEe----------------------------------CCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 5432 13679999999999999987 455999999987 6777765
Q ss_pred -CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCC
Q 046828 217 -AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSP 295 (627)
Q Consensus 217 -~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~ 295 (627)
++.|++||+.+++++.++.+|... +.. +++.++...
T Consensus 212 ~D~~i~~wd~~~~~~~~~~~~h~~~-------------v~~-------~~~~~~g~~----------------------- 248 (410)
T 1vyh_C 212 RDKTIKMWEVQTGYCVKTFTGHREW-------------VRM-------VRPNQDGTL----------------------- 248 (410)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSC-------------EEE-------EEECTTSSE-----------------------
T ss_pred CCCeEEEEECCCCcEEEEEeCCCcc-------------EEE-------EEECCCCCE-----------------------
Confidence 568999999999999888877543 222 233321100
Q ss_pred CCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC
Q 046828 296 SNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR 375 (627)
Q Consensus 296 s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~ 375 (627)
+ ..++.||.|+|||+.++
T Consensus 249 ----------------------------------------------------------l----~s~s~D~~v~vwd~~~~ 266 (410)
T 1vyh_C 249 ----------------------------------------------------------I----ASCSNDQTVRVWVVATK 266 (410)
T ss_dssp ----------------------------------------------------------E----EEEETTSCEEEEETTTC
T ss_pred ----------------------------------------------------------E----EEEcCCCeEEEEECCCC
Confidence 0 12357899999999999
Q ss_pred eEEEEeccCCCCeEEEEECCC--------------------CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 376 SVISQFRAHTSPISALCFDRS--------------------GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspd--------------------G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
+.+..+..|..+|.+++|+|+ |.+|++++.||+ |+|||+. ++
T Consensus 267 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~-i~iwd~~-------~~---------- 328 (410)
T 1vyh_C 267 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVS-------TG---------- 328 (410)
T ss_dssp CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETT-------TT----------
T ss_pred ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe-EEEEECC-------CC----------
Confidence 999999999999999999997 779999999997 8999986 33
Q ss_pred ceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccccccc
Q 046828 436 SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVD 495 (627)
Q Consensus 436 ~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~ 495 (627)
..+..+ .||.. .|.+++|+|++++|++++.||+|+||++........+..|...+.
T Consensus 329 --~~~~~~-~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~ 384 (410)
T 1vyh_C 329 --MCLMTL-VGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT 384 (410)
T ss_dssp --EEEEEE-ECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEE
T ss_pred --ceEEEE-ECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEE
Confidence 245555 57654 599999999999999999999999999987666666777765443
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.94 E-value=1.6e-24 Score=226.39 Aligned_cols=257 Identities=13% Similarity=0.125 Sum_probs=190.5
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.|.+.|..+.|.. ..+.+++.+.|+.++|||+.+... ...+..|.+.|..+.+.|.. .+|
T Consensus 53 gH~~~v~~~~~s~------d~~~l~s~s~Dg~v~iWd~~~~~~-~~~~~~~~~~v~~~~~s~~~-------------~~l 112 (340)
T 1got_B 53 GHLAKIYAMHWGT------DSRLLLSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSG-------------NYV 112 (340)
T ss_dssp CCSSCEEEEEECT------TSSEEEEEETTTEEEEEETTTCCE-EEEEECSSSCEEEEEECTTS-------------SEE
T ss_pred CCCCceEEEEECC------CCCEEEEEeCCCcEEEEECCCCCc-ceEeecCCccEEEEEECCCC-------------CEE
Confidence 4678888899963 236788888899999999998653 44556688888888887642 555
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc----eEEEEe-cCCeEEEEEecC-cEEE
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN----YVHVLR-FRSTVYMVRCSP-RIVA 213 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~----~V~tL~-f~s~V~sV~~s~-~~La 213 (627)
+..+ .+++|++||+++++ ...++. +...|.++.+++ ..|+
T Consensus 113 ~s~~----------------------------------~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~ 158 (340)
T 1got_B 113 ACGG----------------------------------LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158 (340)
T ss_dssp EEEE----------------------------------TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEE
T ss_pred EEEe----------------------------------CCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEE
Confidence 5422 13779999998864 455565 456899999975 3455
Q ss_pred EE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 214 VG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 214 V~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
++ .++.|++||+.+++.+.++.+|..+ +..+ ++.++...
T Consensus 159 s~s~d~~i~~wd~~~~~~~~~~~~h~~~-------------v~~~-------~~~~~~~~-------------------- 198 (340)
T 1got_B 159 TSSGDTTCALWDIETGQQTTTFTGHTGD-------------VMSL-------SLAPDTRL-------------------- 198 (340)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEE-------EECTTSSE--------------------
T ss_pred EEECCCcEEEEECCCCcEEEEEcCCCCc-------------eEEE-------EECCCCCE--------------------
Confidence 44 5678999999999988888776543 2223 33332100
Q ss_pred CCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI 372 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~ 372 (627)
+ ..++.||.|+|||+
T Consensus 199 -------------------l----------------------------------------------~sg~~d~~v~~wd~ 213 (340)
T 1got_B 199 -------------------F----------------------------------------------VSGACDASAKLWDV 213 (340)
T ss_dssp -------------------E----------------------------------------------EEEETTSCEEEEET
T ss_pred -------------------E----------------------------------------------EEEeCCCcEEEEEC
Confidence 0 02357899999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcE
Q 046828 373 VSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVI 452 (627)
Q Consensus 373 ~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I 452 (627)
.+++.+..|.+|..+|.+++|+|+|.+|++++.||+ |+|||+. .+ ..+..+........|
T Consensus 214 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~-------~~------------~~~~~~~~~~~~~~v 273 (340)
T 1got_B 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLR-------AD------------QELMTYSHDNIICGI 273 (340)
T ss_dssp TTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETT-------TT------------EEEEEECCTTCCSCE
T ss_pred CCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECC-------CC------------cEEEEEccCCcccce
Confidence 999999999999999999999999999999999998 8999986 22 133333211122359
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccccccc
Q 046828 453 QDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVD 495 (627)
Q Consensus 453 ~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~ 495 (627)
.+++|+||+++|++++.||+|+||++........+..|...+.
T Consensus 274 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~ 316 (340)
T 1got_B 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316 (340)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEE
Confidence 9999999999999999999999999987665566777765443
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.94 E-value=4.5e-24 Score=222.29 Aligned_cols=240 Identities=14% Similarity=0.177 Sum_probs=182.0
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
..+...|..+.|.. ....++..+.|+.++|||+++... ...+..+...+..+.+.|.. .+
T Consensus 77 ~gh~~~v~~~~~~~------~~~~l~s~s~D~~i~lWd~~~~~~-~~~~~~~~~~~~~~~~spdg-------------~~ 136 (321)
T 3ow8_A 77 EGHQLGVVSVDISH------TLPIAASSSLDAHIRLWDLENGKQ-IKSIDAGPVDAWTLAFSPDS-------------QY 136 (321)
T ss_dssp CCCSSCEEEEEECS------SSSEEEEEETTSEEEEEETTTTEE-EEEEECCTTCCCCEEECTTS-------------SE
T ss_pred ccCCCCEEEEEECC------CCCEEEEEeCCCcEEEEECCCCCE-EEEEeCCCccEEEEEECCCC-------------CE
Confidence 34566777777753 236778888899999999998553 33344455556666665532 45
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecC--cEEEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSP--RIVAVG 215 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~--~~LaV~ 215 (627)
|+... .+++|++||+++++.+.++..+ ..|.++++++ ++|+++
T Consensus 137 l~~g~----------------------------------~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 137 LATGT----------------------------------HVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEEC----------------------------------TTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEEc----------------------------------CCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 54321 1377999999999999998854 5899999997 688887
Q ss_pred e-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCC
Q 046828 216 L-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTS 294 (627)
Q Consensus 216 ~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s 294 (627)
. ++.|++||+.+++.++++.+|..+ +..+ ++.++...
T Consensus 183 ~~dg~i~iwd~~~~~~~~~~~~h~~~-------------v~~l-------~~spd~~~---------------------- 220 (321)
T 3ow8_A 183 AIDGIINIFDIATGKLLHTLEGHAMP-------------IRSL-------TFSPDSQL---------------------- 220 (321)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSC-------------CCEE-------EECTTSCE----------------------
T ss_pred cCCCeEEEEECCCCcEEEEEcccCCc-------------eeEE-------EEcCCCCE----------------------
Confidence 6 568999999999998888776543 2223 33332100
Q ss_pred CCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 295 PSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 295 ~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
+ ..++.||.|+|||+.+
T Consensus 221 -----------------l----------------------------------------------~s~s~dg~i~iwd~~~ 237 (321)
T 3ow8_A 221 -----------------L----------------------------------------------VTASDDGYIKIYDVQH 237 (321)
T ss_dssp -----------------E----------------------------------------------EEECTTSCEEEEETTT
T ss_pred -----------------E----------------------------------------------EEEcCCCeEEEEECCC
Confidence 0 0235789999999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEE
Q 046828 375 RSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQD 454 (627)
Q Consensus 375 ~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~s 454 (627)
++.+..+.+|..+|.+++|+|+|++|++++.||+ |+|||+. ++ ..+..+ .++. ..|.+
T Consensus 238 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~-------~~------------~~~~~~-~~h~-~~v~~ 295 (321)
T 3ow8_A 238 ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVG-------TR------------TCVHTF-FDHQ-DQVWG 295 (321)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETT-------TT------------EEEEEE-CCCS-SCEEE
T ss_pred cceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCC-------CC------------EEEEEE-cCCC-CcEEE
Confidence 9999999999999999999999999999999998 8999986 23 245555 5654 45999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 455 ICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 455 IaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
++|+||+++|++++.||+|+||+..
T Consensus 296 v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 296 VKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999999963
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.94 E-value=4e-24 Score=219.91 Aligned_cols=251 Identities=14% Similarity=0.110 Sum_probs=186.9
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.+.+.|..+.|.. ..+.+++.++++.++|||+++... ...+..|.++|+.+.+.|.. .+|
T Consensus 11 ~h~~~V~~~~fsp------~~~~l~s~~~dg~v~lWd~~~~~~-~~~~~~~~~~v~~~~~~~~~-------------~~l 70 (304)
T 2ynn_A 11 NRSDRVKGIDFHP------TEPWVLTTLYSGRVELWNYETQVE-VRSIQVTETPVRAGKFIARK-------------NWI 70 (304)
T ss_dssp EECSCEEEEEECS------SSSEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEEEGGG-------------TEE
T ss_pred CCCCceEEEEECC------CCCEEEEEcCCCcEEEEECCCCce-eEEeeccCCcEEEEEEeCCC-------------CEE
Confidence 3567899999963 237788899999999999998553 44556688999999988753 455
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL 216 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~ 216 (627)
+... .+++|++||+++++.+.+++ +...|.+|++++ ++|+++.
T Consensus 71 ~s~s----------------------------------~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs 116 (304)
T 2ynn_A 71 IVGS----------------------------------DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116 (304)
T ss_dssp EEEE----------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEC----------------------------------CCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEEC
Confidence 5422 13789999999999999998 456999999997 6777776
Q ss_pred -CCeEEEEeCCCCce-eEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCC
Q 046828 217 -AAQIYCFDALTLES-KFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTS 294 (627)
Q Consensus 217 -~~~I~i~D~~t~e~-~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s 294 (627)
++.|++||+.+... ..++.+|..+ +.. +++.+.+..
T Consensus 117 ~D~~v~lWd~~~~~~~~~~~~~h~~~-------------v~~-------v~~~p~~~~---------------------- 154 (304)
T 2ynn_A 117 DDLTVKLWNWENNWALEQTFEGHEHF-------------VMC-------VAFNPKDPS---------------------- 154 (304)
T ss_dssp TTSCEEEEEGGGTTEEEEEECCCCSC-------------EEE-------EEECTTCTT----------------------
T ss_pred CCCeEEEEECCCCcchhhhhcccCCc-------------EEE-------EEECCCCCC----------------------
Confidence 55899999988744 4555555433 222 333331100
Q ss_pred CCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 295 PSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 295 ~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
. + +.++.||.|+|||+.+
T Consensus 155 -----~-----------------------------------------------------l----~sgs~D~~v~iwd~~~ 172 (304)
T 2ynn_A 155 -----T-----------------------------------------------------F----ASGCLDRTVKVWSLGQ 172 (304)
T ss_dssp -----E-----------------------------------------------------E----EEEETTSEEEEEETTC
T ss_pred -----E-----------------------------------------------------E----EEEeCCCeEEEEECCC
Confidence 0 0 1245789999999988
Q ss_pred CeEEEEec-cCCCCeEEEEECC--CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCc
Q 046828 375 RSVISQFR-AHTSPISALCFDR--SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAV 451 (627)
Q Consensus 375 ~~~l~~~~-aH~~~Is~laFsp--dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~ 451 (627)
.+....+. .|...|..++|+| ++.+|++++.||+ |+|||+. ++ ..+..+ +||.. .
T Consensus 173 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~iWd~~-------~~------------~~~~~~-~~h~~-~ 230 (304)
T 2ynn_A 173 STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQ-------TK------------SCVATL-EGHMS-N 230 (304)
T ss_dssp SSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE-EEEEETT-------TT------------EEEEEE-ECCSS-C
T ss_pred CCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe-EEEEeCC-------CC------------ccceee-CCCCC-C
Confidence 76655554 5678899999987 7889999999998 8999986 23 245555 67754 5
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccc
Q 046828 452 IQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 452 I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h 490 (627)
|.+++|+|++++|++++.||+|+||++........+..|
T Consensus 231 v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~ 269 (304)
T 2ynn_A 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (304)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence 999999999999999999999999999876555554444
No 8
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=3.8e-24 Score=227.04 Aligned_cols=227 Identities=15% Similarity=0.127 Sum_probs=165.6
Q ss_pred eccCcEEEEecCCCCCceEEeeec--------CCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeecc
Q 046828 87 GYSNGFQVLDVEDATNVSELVSRR--------DDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVG 158 (627)
Q Consensus 87 Gy~~G~qVWdv~~~~~~~ells~~--------dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~ 158 (627)
+.++.+++|+++...+..+.+... +..++++++.|.. .+|+++++
T Consensus 101 ~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-------------~~la~as~-------------- 153 (365)
T 4h5i_A 101 KGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-------------TVAAIASS-------------- 153 (365)
T ss_dssp SCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-------------SCEEEEES--------------
T ss_pred cCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-------------CEEEEEEC--------------
Confidence 346679999998866555544432 3446777776643 45665431
Q ss_pred CcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCCeEEEEeCCCCceeEEEEc
Q 046828 159 RDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~~I~i~D~~t~e~~~tl~~ 236 (627)
. .+++|+|||+++++++.++++...|++|+|++ ++|+++.++.+.+|+..+++.+.....
T Consensus 154 --------~----------~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~ 215 (365)
T 4h5i_A 154 --------K----------VPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTD 215 (365)
T ss_dssp --------C----------SSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECC
T ss_pred --------C----------CCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeec
Confidence 1 24889999999999999999999999999998 799999999999999999887654422
Q ss_pred CCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhc
Q 046828 237 YPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAA 314 (627)
Q Consensus 237 ~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~ 314 (627)
.... ..+..++++| ++|+.++.
T Consensus 216 ~~~~-----------~~v~~v~fspdg~~l~~~s~--------------------------------------------- 239 (365)
T 4h5i_A 216 FDKN-----------WSLSKINFIADDTVLIAASL--------------------------------------------- 239 (365)
T ss_dssp CCTT-----------EEEEEEEEEETTEEEEEEEE---------------------------------------------
T ss_pred CCCC-----------CCEEEEEEcCCCCEEEEEec---------------------------------------------
Confidence 1110 0022233322 22322210
Q ss_pred ceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeE----EEEeccCCCCeEE
Q 046828 315 GLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSV----ISQFRAHTSPISA 390 (627)
Q Consensus 315 gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~----l~~~~aH~~~Is~ 390 (627)
.......+++||+..... ...+..|..+|.+
T Consensus 240 ---------------------------------------------d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~ 274 (365)
T 4h5i_A 240 ---------------------------------------------KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITS 274 (365)
T ss_dssp ---------------------------------------------SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEE
T ss_pred ---------------------------------------------CCcceeEEeecccccceecceeeeeecCCCCCeEe
Confidence 011223578888876643 4568899999999
Q ss_pred EEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC
Q 046828 391 LCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR 470 (627)
Q Consensus 391 laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d 470 (627)
|+|+|||++||+|+.||+ |+|||+. ++ ..+.++.+||+. .|++|+|||||++||++|.|
T Consensus 275 ~~~Spdg~~lasgs~D~~-V~iwd~~-------~~------------~~~~~~~~gH~~-~V~~v~fSpdg~~laS~S~D 333 (365)
T 4h5i_A 275 MDVDMKGELAVLASNDNS-IALVKLK-------DL------------SMSKIFKQAHSF-AITEVTISPDSTYVASVSAA 333 (365)
T ss_dssp EEECTTSCEEEEEETTSC-EEEEETT-------TT------------EEEEEETTSSSS-CEEEEEECTTSCEEEEEETT
T ss_pred EEECCCCCceEEEcCCCE-EEEEECC-------CC------------cEEEEecCcccC-CEEEEEECCCCCEEEEEeCC
Confidence 999999999999999998 8999986 33 366677788865 59999999999999999999
Q ss_pred CeEEEEEcCC
Q 046828 471 GTCHIFVLTP 480 (627)
Q Consensus 471 gTvhIw~i~~ 480 (627)
+||+||+|..
T Consensus 334 ~tvrvw~ip~ 343 (365)
T 4h5i_A 334 NTIHIIKLPL 343 (365)
T ss_dssp SEEEEEECCT
T ss_pred CeEEEEEcCC
Confidence 9999999964
No 9
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.94 E-value=3.6e-24 Score=230.30 Aligned_cols=258 Identities=13% Similarity=0.158 Sum_probs=187.2
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.+.+.|..+.|.. ..+.+++.+.|+.++|||+.... ....+..|++.|..+.+.|.. .+|
T Consensus 148 ~h~~~V~~v~~~~------~~~~l~sgs~D~~i~iwd~~~~~-~~~~~~~h~~~V~~v~~~p~~-------------~~l 207 (410)
T 1vyh_C 148 GHTDSVQDISFDH------SGKLLASCSADMTIKLWDFQGFE-CIRTMHGHDHNVSSVSIMPNG-------------DHI 207 (410)
T ss_dssp CCSSCEEEEEECT------TSSEEEEEETTSCCCEEETTSSC-EEECCCCCSSCEEEEEECSSS-------------SEE
T ss_pred ccCCcEEEEEEcC------CCCEEEEEeCCCeEEEEeCCCCc-eeEEEcCCCCCEEEEEEeCCC-------------CEE
Confidence 3567888888863 23678888889999999998754 445566788999999988753 455
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecC--cEEEEEe
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP--RIVAVGL 216 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~--~~LaV~~ 216 (627)
+..+ .+++|++||+++++++.++.. ...|.++.+++ ++|+++.
T Consensus 208 ~s~s----------------------------------~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s 253 (410)
T 1vyh_C 208 VSAS----------------------------------RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS 253 (410)
T ss_dssp EEEE----------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEe----------------------------------CCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEc
Confidence 4322 237899999999999999984 45899999987 6777775
Q ss_pred -CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCC
Q 046828 217 -AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSP 295 (627)
Q Consensus 217 -~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~ 295 (627)
++.|++||+.+++...++.+|..+ +.. +++.+..........
T Consensus 254 ~D~~v~vwd~~~~~~~~~~~~h~~~-------------v~~-------~~~~~~~~~~~~~~~----------------- 296 (410)
T 1vyh_C 254 NDQTVRVWVVATKECKAELREHRHV-------------VEC-------ISWAPESSYSSISEA----------------- 296 (410)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSC-------------EEE-------EEECCSCGGGGGGGC-----------------
T ss_pred CCCeEEEEECCCCceeeEecCCCce-------------EEE-------EEEcCcccccchhhh-----------------
Confidence 568999999999998888776543 222 344432211000000
Q ss_pred CCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC
Q 046828 296 SNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR 375 (627)
Q Consensus 296 s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~ 375 (627)
.+.. . ...+ ..|.+ ...++.||.|+|||+.++
T Consensus 297 -~~~~-----------~----~~~~-----------------------------~~g~~---l~sgs~D~~i~iwd~~~~ 328 (410)
T 1vyh_C 297 -TGSE-----------T----KKSG-----------------------------KPGPF---LLSGSRDKTIKMWDVSTG 328 (410)
T ss_dssp -CSCC---------------------------------------------------CCE---EEEEETTSEEEEEETTTT
T ss_pred -cccc-----------c----cccC-----------------------------CCCCE---EEEEeCCCeEEEEECCCC
Confidence 0000 0 0000 00111 124568999999999999
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEE
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDI 455 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sI 455 (627)
+++..+.+|..+|.+++|+|+|++|++++.||+ |+|||+. ++. .+..+ .+|. ..|.++
T Consensus 329 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~-i~vwd~~-------~~~------------~~~~~-~~h~-~~v~~l 386 (410)
T 1vyh_C 329 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYK-------NKR------------CMKTL-NAHE-HFVTSL 386 (410)
T ss_dssp EEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCT-------TSC------------CCEEE-ECCS-SCEEEE
T ss_pred ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECC-------CCc------------eEEEE-cCCC-CcEEEE
Confidence 999999999999999999999999999999998 8999985 221 33334 5665 359999
Q ss_pred EEccCCCEEEEEeCCCeEEEEEc
Q 046828 456 CFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 456 aFSpDg~~Las~S~dgTvhIw~i 478 (627)
+|+|++++||+++.||+|+||++
T Consensus 387 ~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 387 DFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EECSSSSCEEEEETTSEEEEEC-
T ss_pred EEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999999999999999986
No 10
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.94 E-value=1.2e-24 Score=229.93 Aligned_cols=245 Identities=13% Similarity=0.106 Sum_probs=171.7
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCce---EEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVS---ELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~---ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
+.+.|..+.|.. + .++|+.+.++.++|||+...+... .....|+++|.++.+.|.. .
T Consensus 93 ~~~~V~~~~~s~----d---~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-------------~ 152 (357)
T 4g56_B 93 TEAGVTDVAWVS----E---KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-------------T 152 (357)
T ss_dssp CSSCEEEEEEET----T---TEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-------------S
T ss_pred CCCCEEEEEEcC----C---CCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-------------C
Confidence 456688888863 2 568888889999999998765321 1223578999999987643 4
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecC---cEEE
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP---RIVA 213 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~---~~La 213 (627)
+|+... .+++|++||+++++.+.+++. ...|.+|+|++ .+++
T Consensus 153 ~l~sgs----------------------------------~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~ 198 (357)
T 4g56_B 153 QAVSGG----------------------------------KDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFL 198 (357)
T ss_dssp EEEEEE----------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEE
T ss_pred EEEEEe----------------------------------CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceee
Confidence 554322 136699999999999999984 56999999986 3566
Q ss_pred EEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 214 VGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 214 V~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
++. +++|++||+.+++....+...... ..+ ..+++.++..
T Consensus 199 s~~~dg~v~~wd~~~~~~~~~~~~~~~~-------------~~v-----~~v~~sp~~~--------------------- 239 (357)
T 4g56_B 199 SCGEDGRILLWDTRKPKPATRIDFCASD-------------TIP-----TSVTWHPEKD--------------------- 239 (357)
T ss_dssp EEETTSCEEECCTTSSSCBCBCCCTTCC-------------SCE-----EEEEECTTST---------------------
T ss_pred eeccCCceEEEECCCCceeeeeeecccc-------------ccc-----cchhhhhccc---------------------
Confidence 654 668999999998766544322111 001 2234433210
Q ss_pred CCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI 372 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~ 372 (627)
.+ + +.+..|+.|+|||+
T Consensus 240 ------~~-----------------------------------------------------l----a~g~~d~~i~~wd~ 256 (357)
T 4g56_B 240 ------DT-----------------------------------------------------F----ACGDETGNVSLVNI 256 (357)
T ss_dssp ------TE-----------------------------------------------------E----EEEESSSCEEEEES
T ss_pred ------ce-----------------------------------------------------E----EEeecccceeEEEC
Confidence 00 0 12357899999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCc
Q 046828 373 VSRSVISQFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAV 451 (627)
Q Consensus 373 ~s~~~l~~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~ 451 (627)
.+++.+..+.+|..+|.+|+|+|+| ++|||++.||+ |+|||+. ++ .+.+. .+|+ ..
T Consensus 257 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~-------~~-------------~~~~~-~~H~-~~ 313 (357)
T 4g56_B 257 KNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDAD-------FS-------------EVFRD-LSHR-DF 313 (357)
T ss_dssp SCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTT-------SC-------------EEEEE-CCCS-SC
T ss_pred CCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECC-------CC-------------cEeEE-CCCC-CC
Confidence 9999999999999999999999998 58999999998 8999985 23 33444 3665 45
Q ss_pred EEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 452 IQDICFSH-YSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 452 I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
|++|+||| |+++||+++.||+|+||++...+..
T Consensus 314 V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 314 VTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp EEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 99999998 8999999999999999999765543
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.93 E-value=2e-23 Score=216.43 Aligned_cols=267 Identities=11% Similarity=0.091 Sum_probs=179.0
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC----ceEEeeecCCceEEEEEeeCCCCCCCCCCcCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN----VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRN 134 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~----~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~ 134 (627)
..|.+.|..+.|.. ...+.++..+.|+.+++||+..... ....+..|.+.|..+.+.|..
T Consensus 14 ~gH~~~V~~l~~~~-----~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg----------- 77 (319)
T 3frx_A 14 EGHNGWVTSLATSA-----GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG----------- 77 (319)
T ss_dssp CCCSSCEEEEEECS-----SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-----------
T ss_pred ccccceEEEEEccC-----CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-----------
Confidence 45778888888852 1236788889999999999975332 123456788899888887642
Q ss_pred CCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cE
Q 046828 135 SHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RI 211 (627)
Q Consensus 135 ~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~ 211 (627)
.+|+... .+++|+|||+++++.+.++. +...|.+|++++ ++
T Consensus 78 --~~l~s~s----------------------------------~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 121 (319)
T 3frx_A 78 --AYALSAS----------------------------------WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121 (319)
T ss_dssp --SEEEEEE----------------------------------TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCE
T ss_pred --CEEEEEe----------------------------------CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCE
Confidence 4554322 24789999999999999998 556999999987 67
Q ss_pred EEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCC
Q 046828 212 VAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVS 290 (627)
Q Consensus 212 LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s 290 (627)
|+++. ++.|++||+. ++++.++.+|... +.. +++.+....
T Consensus 122 l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~-------------v~~-------~~~~~~~~~------------------ 162 (319)
T 3frx_A 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDW-------------VSQ-------VRVVPNEKA------------------ 162 (319)
T ss_dssp EEEEETTSCEEEEETT-SCEEEEECCCSSC-------------EEE-------EEECCC---------------------
T ss_pred EEEEeCCCeEEEEECC-CCeEEEEeccCCc-------------EEE-------EEEccCCCC------------------
Confidence 77775 5589999996 4566677666432 222 233221100
Q ss_pred CCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEE
Q 046828 291 PSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVK 370 (627)
Q Consensus 291 ~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~Iw 370 (627)
..+ +. .+ ..++.||.|++|
T Consensus 163 -----~~~------------------------~~----------------------------~l----~s~~~d~~i~~w 181 (319)
T 3frx_A 163 -----DDD------------------------SV----------------------------TI----ISAGNDKMVKAW 181 (319)
T ss_dssp --------------------------------CC----------------------------EE----EEEETTSCEEEE
T ss_pred -----CCC------------------------cc----------------------------EE----EEEeCCCEEEEE
Confidence 000 00 00 134579999999
Q ss_pred ECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCC----C----------CCCCCccccCCCCc
Q 046828 371 DIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSK----G----------RSGSASQTYDWTSS 436 (627)
Q Consensus 371 D~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~----~----------~~g~~~~~~~~~~~ 436 (627)
|+.+.+....+.+|..+|.+++|+|+|++||+++.||+ |+|||+...... . +++....... ..
T Consensus 182 d~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~--~~ 258 (319)
T 3frx_A 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT--AT 258 (319)
T ss_dssp ETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEE--TT
T ss_pred ECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEc--CC
Confidence 99999999999999999999999999999999999998 899998621000 0 0000000000 00
Q ss_pred eeEEEE---------Eee---cC---CcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 437 HVHLYK---------LHR---GM---TSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 437 ~~~l~~---------l~r---G~---t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
..+++. ++. +. ....|.+++|||||++|++++.||+|+||++..
T Consensus 259 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 259 GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 011221 111 11 122488899999999999999999999999853
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.93 E-value=3.4e-24 Score=226.34 Aligned_cols=260 Identities=15% Similarity=0.086 Sum_probs=181.4
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecC----------CCCCceEEeeecCCceEEEEEeeCCCCCCCCC
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVE----------DATNVSELVSRRDDPVTFLQMQPLPAKSDGQE 130 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~----------~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D 130 (627)
....|..+.|.. | .++|+.|.+..+++||.. .........-.++.+|..+.+.|.
T Consensus 29 ~~~~v~~~~fs~----d---G~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-------- 93 (344)
T 4gqb_B 29 MERQLEAARYRS----D---GALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-------- 93 (344)
T ss_dssp CCSEEEEEEECT----T---SCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT--------
T ss_pred ccCCEEEEEECC----C---CCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC--------
Confidence 445688899963 1 346667778888888732 111112222345677888888764
Q ss_pred CcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-----cCCeEEEE
Q 046828 131 GFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-----FRSTVYMV 205 (627)
Q Consensus 131 ~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-----f~s~V~sV 205 (627)
..|++.. .+++|+|||+++++.+.+++ +...|.+|
T Consensus 94 ------~~l~~~s----------------------------------~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v 133 (344)
T 4gqb_B 94 ------RGILVAS----------------------------------DSGAVELWELDENETLIVSKFCKYEHDDIVSTV 133 (344)
T ss_dssp ------TEEEEEE----------------------------------TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEE
T ss_pred ------CeEEEEE----------------------------------CCCEEEEEeccCCCceeEeeccccCCCCCEEEE
Confidence 1233321 13789999999998776654 45699999
Q ss_pred EecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCC
Q 046828 206 RCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQ 282 (627)
Q Consensus 206 ~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q 282 (627)
+|++ ++|+++. ++.|++||+.+++.++++.+|..+ +. .+++.++...
T Consensus 134 ~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~-------------V~-------~~~~~~~~~~---------- 183 (344)
T 4gqb_B 134 SVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ-------------VT-------CVAASPHKDS---------- 183 (344)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EE-------EEEECSSCTT----------
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc-------------eE-------EEEecCCCCC----------
Confidence 9997 6888876 557999999999999999887653 22 2344332100
Q ss_pred CCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCC
Q 046828 283 SLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTD 362 (627)
Q Consensus 283 ~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~ 362 (627)
+ + .+++
T Consensus 184 -----------------------------~-----------------------------------------l----~s~s 189 (344)
T 4gqb_B 184 -----------------------------V-----------------------------------------F----LSCS 189 (344)
T ss_dssp -----------------------------E-----------------------------------------E----EEEE
T ss_pred -----------------------------c-----------------------------------------e----eeec
Confidence 0 0 1245
Q ss_pred CCCeEEEEECCCCeEEEEec--cCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 363 IAGMVVVKDIVSRSVISQFR--AHTSPISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~--aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
.||.|+|||+.+++.+..+. .|...+.+++|+| ++.+||+++.||+ |+|||+. ++. .
T Consensus 190 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~-v~~wd~~-------~~~------------~ 249 (344)
T 4gqb_B 190 EDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT-VSLVDTK-------STS------------C 249 (344)
T ss_dssp TTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE-EEEEESC-------C--------------C
T ss_pred cccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc-EEEEECC-------CCc------------E
Confidence 78999999999999888875 4566799999999 4678999999997 8999986 231 3
Q ss_pred EEEEeecCCcCcEEEEEEccCC-CEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYS-QWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPV 502 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg-~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~ 502 (627)
+..+ +||.. .|.+|+|+||+ ++||+++.|++|+||++.. +....+..|...+....+.|.
T Consensus 250 ~~~~-~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-~~~~~~~~H~~~V~~v~~sp~ 310 (344)
T 4gqb_B 250 VLSS-AVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-SELFRSQAHRDFVRDATWSPL 310 (344)
T ss_dssp CEEE-ECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTC-CEEEEECCCSSCEEEEEECSS
T ss_pred EEEE-cCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCC-CcEEEEcCCCCCEEEEEEeCC
Confidence 4444 57654 59999999998 5899999999999999875 344566778766655444444
No 13
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.93 E-value=2.4e-23 Score=213.31 Aligned_cols=263 Identities=11% Similarity=0.127 Sum_probs=179.7
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
..|.+.|..+.|+. .++.+++.+.|+.++|||++... .....+..|.++|..+.+.|.. + ..
T Consensus 6 ~~h~~~V~~~~~s~------~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~------~-----g~ 68 (297)
T 2pm7_B 6 NAHNEMIHDAVMDY------YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK------F-----GT 68 (297)
T ss_dssp CSCSSCEEEEEECT------TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG------G-----CS
T ss_pred cCCcCceEEEEECC------CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC------c-----CC
Confidence 35778899999973 24788889999999999998532 3445667799999999986531 0 14
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc--eEEEEe-cCCeEEEEEecC----c
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN--YVHVLR-FRSTVYMVRCSP----R 210 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~--~V~tL~-f~s~V~sV~~s~----~ 210 (627)
+|+... .+++|+|||+++++ .+.++. +...|.+|+|++ +
T Consensus 69 ~l~s~s----------------------------------~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~ 114 (297)
T 2pm7_B 69 ILASCS----------------------------------YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP 114 (297)
T ss_dssp EEEEEE----------------------------------TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS
T ss_pred EEEEEc----------------------------------CCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCc
Confidence 555432 24789999999884 566666 456999999986 4
Q ss_pred EEEEEe-CCeEEEEeCCCCce--eEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLES--KFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPP 287 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~--~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~ 287 (627)
+|+++. ++.|++||+.+.+. ...+.+|..+ +..++ +.+..... .+.
T Consensus 115 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~-------------v~~~~-------~~p~~~~~--~~~--------- 163 (297)
T 2pm7_B 115 MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------VNSAS-------WAPATIEE--DGE--------- 163 (297)
T ss_dssp EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSC-------------EEEEE-------ECCCC-----------------
T ss_pred EEEEEECCCcEEEEEecCCCceeeeeeecccCc-------------cceEe-------ecCCcccc--ccc---------
Confidence 777775 56899999987642 3455555432 22333 33211000 000
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeE
Q 046828 288 SVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMV 367 (627)
Q Consensus 288 ~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V 367 (627)
+. + .++ ++ ..+.++.||.|
T Consensus 164 --------------------------------~~-~-----------~~~--------------~~---~l~sgs~D~~v 182 (297)
T 2pm7_B 164 --------------------------------HN-G-----------TKE--------------SR---KFVTGGADNLV 182 (297)
T ss_dssp ----------------------------------------------------------------CC---EEEEEETTSCE
T ss_pred --------------------------------CC-C-----------CCC--------------cc---eEEEEcCCCcE
Confidence 00 0 000 00 01135689999
Q ss_pred EEEECCCCe----EEEEeccCCCCeEEEEECCCC---CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 368 VVKDIVSRS----VISQFRAHTSPISALCFDRSG---TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 368 ~IwD~~s~~----~l~~~~aH~~~Is~laFspdG---~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
+|||+.+++ .+..+.+|..+|.+|+|+|++ .+||+++.||+ |+|||+... .+. ...
T Consensus 183 ~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v~iWd~~~~-----~~~-----------~~~ 245 (297)
T 2pm7_B 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CIIWTQDNE-----QGP-----------WKK 245 (297)
T ss_dssp EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESST-----TSC-----------CEE
T ss_pred EEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-EEEEEeCCC-----CCc-----------cce
Confidence 999998765 667899999999999999995 89999999998 799998621 010 111
Q ss_pred EEEe-ecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 441 YKLH-RGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 441 ~~l~-rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
..+. .++ ...|.+++|+||+++||+++.||+|+||+....+
T Consensus 246 ~~~~~~~~-~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 246 TLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (297)
T ss_dssp EESSSSCC-SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred eeeecccC-CCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCC
Confidence 1221 233 3469999999999999999999999999987543
No 14
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.93 E-value=3.8e-23 Score=217.93 Aligned_cols=258 Identities=11% Similarity=0.041 Sum_probs=188.8
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.|.+.|..+.|.. ..+.+++.+.|+.++|||+.+.. ....+..+...|..+.+.|.. .+|
T Consensus 62 gH~~~V~~~~~s~------d~~~l~s~s~Dg~v~vWd~~~~~-~~~~~~~~~~~v~~~~~sp~g-------------~~l 121 (354)
T 2pbi_B 62 GHGNKVLCMDWCK------DKRRIVSSSQDGKVIVWDSFTTN-KEHAVTMPCTWVMACAYAPSG-------------CAI 121 (354)
T ss_dssp CCSSCEEEEEECT------TSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCEEEECTTS-------------SEE
T ss_pred CCCCeEEEEEECC------CCCEEEEEeCCCeEEEEECCCCC-cceEEecCCCCEEEEEECCCC-------------CEE
Confidence 5778899999963 23788999999999999998755 344556677778888877642 455
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCC------ceEEEEe-cCCeEEEEEecC--c
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSH------NYVHVLR-FRSTVYMVRCSP--R 210 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~------~~V~tL~-f~s~V~sV~~s~--~ 210 (627)
+..+ .++++++|++... +....+. +...|.++.|++ +
T Consensus 122 asg~----------------------------------~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 167 (354)
T 2pbi_B 122 ACGG----------------------------------LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM 167 (354)
T ss_dssp EEES----------------------------------TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS
T ss_pred EEee----------------------------------CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC
Confidence 4321 2378999998754 3455665 456899999987 4
Q ss_pred EEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSV 289 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~ 289 (627)
.|+++. ++.|++||+.+++.+.++.+|..+ +..+ ++.+...
T Consensus 168 ~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~-------------v~~~-------~~~~~~~------------------ 209 (354)
T 2pbi_B 168 QILTASGDGTCALWDVESGQLLQSFHGHGAD-------------VLCL-------DLAPSET------------------ 209 (354)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSC-------------EEEE-------EECCCSS------------------
T ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC-------------eEEE-------EEEeCCC------------------
Confidence 666654 668999999999999999887543 2222 3322100
Q ss_pred CCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE
Q 046828 290 SPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV 369 (627)
Q Consensus 290 s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I 369 (627)
+.. + ..++.||.|++
T Consensus 210 --------g~~-----------------------------------------------------l----~sgs~Dg~v~~ 224 (354)
T 2pbi_B 210 --------GNT-----------------------------------------------------F----VSGGCDKKAMV 224 (354)
T ss_dssp --------CCE-----------------------------------------------------E----EEEETTSCEEE
T ss_pred --------CCE-----------------------------------------------------E----EEEeCCCeEEE
Confidence 000 0 12457899999
Q ss_pred EECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCc
Q 046828 370 KDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTS 449 (627)
Q Consensus 370 wD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~ 449 (627)
||+.+++.+..+..|..+|.+++|+|+|.+||+++.||+ |+|||+. .+ ..+..+......
T Consensus 225 wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~-------~~------------~~~~~~~~~~~~ 284 (354)
T 2pbi_B 225 WDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLR-------AD------------REVAIYSKESII 284 (354)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETT-------TT------------EEEEEECCTTCC
T ss_pred EECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECC-------CC------------cEEEEEcCCCcc
Confidence 999999999999999999999999999999999999998 8999985 12 133333222222
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccc
Q 046828 450 AVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHV 494 (627)
Q Consensus 450 a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v 494 (627)
..+.+++|+||+++|++++.|++|+||++........+..|...+
T Consensus 285 ~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v 329 (354)
T 2pbi_B 285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRV 329 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCE
T ss_pred cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcE
Confidence 348999999999999999999999999997655455566675544
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.93 E-value=6.7e-23 Score=214.11 Aligned_cols=236 Identities=12% Similarity=0.121 Sum_probs=177.3
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC---ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN---VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~---~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
+...|..+.|.. ..+.+++.|.++.++|||+..... +...+..|.+.|.++.+.+..
T Consensus 96 ~~~~v~~~~~s~------~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------------- 155 (340)
T 1got_B 96 RSSWVMTCAYAP------SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-------------- 155 (340)
T ss_dssp SSSCEEEEEECT------TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--------------
T ss_pred CCccEEEEEECC------CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC--------------
Confidence 445577777753 236788888999999999987542 234456688899888887542
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEE
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAV 214 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV 214 (627)
.|+... .+++|++||+++++.+.++. +...|.++++++ ++|++
T Consensus 156 ~l~s~s----------------------------------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 156 QIVTSS----------------------------------GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EEEEEE----------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred cEEEEE----------------------------------CCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 233222 13679999999999999998 456999999987 67777
Q ss_pred Ee-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPST 293 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~ 293 (627)
+. ++.|++||+.+++.+.++.+|..+ +..+++ .++...
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~~h~~~-------------v~~v~~-------~p~~~~--------------------- 240 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFTGHESD-------------INAICF-------FPNGNA--------------------- 240 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSC-------------EEEEEE-------CTTSSE---------------------
T ss_pred EeCCCcEEEEECCCCeeEEEEcCCcCC-------------EEEEEE-------cCCCCE---------------------
Confidence 75 568999999999998888776543 223333 322100
Q ss_pred CCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC
Q 046828 294 SPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV 373 (627)
Q Consensus 294 s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~ 373 (627)
+ +.++.||.|+|||+.
T Consensus 241 ------------------l----------------------------------------------~s~s~d~~v~iwd~~ 256 (340)
T 1got_B 241 ------------------F----------------------------------------------ATGSDDATCRLFDLR 256 (340)
T ss_dssp ------------------E----------------------------------------------EEEETTSCEEEEETT
T ss_pred ------------------E----------------------------------------------EEEcCCCcEEEEECC
Confidence 0 023478999999999
Q ss_pred CCeEEEEecc--CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCc
Q 046828 374 SRSVISQFRA--HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAV 451 (627)
Q Consensus 374 s~~~l~~~~a--H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~ 451 (627)
+++.+..+.. +...|.+++|+|+|++|++++.||+ |+|||+. .+ ..+..+ .||+. .
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~-i~vwd~~-------~~------------~~~~~~-~~h~~-~ 314 (340)
T 1got_B 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDAL-------KA------------DRAGVL-AGHDN-R 314 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE-EEEEETT-------TC------------CEEEEE-ECCSS-C
T ss_pred CCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCe-EEEEEcc-------cC------------cEeeEe-ecCCC-c
Confidence 9988877753 3457999999999999999999997 8999985 22 144444 67764 6
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 452 IQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 452 I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
|.+|+|+||+++||+++.||+|+||+
T Consensus 315 v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 315 VSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999996
No 16
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.92 E-value=1.6e-22 Score=215.63 Aligned_cols=262 Identities=15% Similarity=0.194 Sum_probs=176.0
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecC------------------CceEEEEEeeC
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRD------------------DPVTFLQMQPL 122 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~d------------------G~V~~v~~lp~ 122 (627)
+.+.|..+.|.. + .+.|+.|.++.++|||+.+...+.++ ..+. ..|+.+.+.|.
T Consensus 63 h~~~V~~v~fsp----d---g~~la~g~~~~v~i~~~~~g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 134 (393)
T 1erj_A 63 HTSVVCCVKFSN----D---GEYLATGCNKTTQVYRVSDGSLVARL-SDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 134 (393)
T ss_dssp CSSCCCEEEECT----T---SSEEEEECBSCEEEEETTTCCEEEEE-CC-----------------CCCCBEEEEEECTT
T ss_pred CCCEEEEEEECC----C---CCEEEEEcCCcEEEEEecCCCEEEEe-cCccccccccccccccccCCCceeEEEEEECCC
Confidence 667777888853 1 34666788999999999986533332 2221 12455555432
Q ss_pred CCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCe
Q 046828 123 PAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRST 201 (627)
Q Consensus 123 p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~ 201 (627)
..+|+... .+++|+|||+++++.+.+++ +...
T Consensus 135 -------------g~~l~s~~----------------------------------~d~~i~iwd~~~~~~~~~~~~h~~~ 167 (393)
T 1erj_A 135 -------------GKFLATGA----------------------------------EDRLIRIWDIENRKIVMILQGHEQD 167 (393)
T ss_dssp -------------SSEEEEEE----------------------------------TTSCEEEEETTTTEEEEEECCCSSC
T ss_pred -------------CCEEEEEc----------------------------------CCCeEEEEECCCCcEEEEEccCCCC
Confidence 24554322 13679999999999999998 5569
Q ss_pred EEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCc
Q 046828 202 VYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGR 278 (627)
Q Consensus 202 V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr 278 (627)
|++++|++ +.|+++. +++|++||+.+++...++..+.. .. .+++.+.+
T Consensus 168 v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~--------------v~-------~~~~~~~~-------- 218 (393)
T 1erj_A 168 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG--------------VT-------TVAVSPGD-------- 218 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC--------------EE-------EEEECSTT--------
T ss_pred EEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCC--------------cE-------EEEEECCC--------
Confidence 99999987 6777765 56899999999988776643211 11 22332211
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccc
Q 046828 279 LSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHS 358 (627)
Q Consensus 279 ~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~ 358 (627)
+.+ +
T Consensus 219 -------------------~~~-----------------------------------------------------l---- 222 (393)
T 1erj_A 219 -------------------GKY-----------------------------------------------------I---- 222 (393)
T ss_dssp -------------------CCE-----------------------------------------------------E----
T ss_pred -------------------CCE-----------------------------------------------------E----
Confidence 000 0
Q ss_pred cCCCCCCeEEEEECCCCeEEEEe-------ccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcccc
Q 046828 359 SDTDIAGMVVVKDIVSRSVISQF-------RAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTY 431 (627)
Q Consensus 359 ~~~~~dG~V~IwD~~s~~~l~~~-------~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~ 431 (627)
+.++.||.|+|||+.+++.+..+ .+|..+|.+|+|+|+|++|++++.||+ |+|||+...... ...
T Consensus 223 ~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~-v~~wd~~~~~~~-------~~~ 294 (393)
T 1erj_A 223 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANNK-------SDS 294 (393)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC----------------
T ss_pred EEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEECCCCCCc-------ccc
Confidence 02347899999999999888777 679999999999999999999999998 899998621100 000
Q ss_pred CCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccc
Q 046828 432 DWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNS 492 (627)
Q Consensus 432 ~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s 492 (627)
...........+ .||+. .|.+++|+||+++|++++.||+|+||++........+..|..
T Consensus 295 ~~~~~~~~~~~~-~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~ 353 (393)
T 1erj_A 295 KTPNSGTCEVTY-IGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN 353 (393)
T ss_dssp ------CEEEEE-ECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred cCCCCCcceEEE-ecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC
Confidence 000000123333 56653 599999999999999999999999999986554445556643
No 17
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.92 E-value=5.6e-22 Score=202.88 Aligned_cols=255 Identities=13% Similarity=0.183 Sum_probs=188.4
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
..|.+.|..+.|.. ..+.+++.+.++.++|||+.+.. ....+..|.+.|..+.+.|.. .+
T Consensus 20 ~gh~~~v~~~~~s~------~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~h~~~v~~~~~~~~~-------------~~ 79 (312)
T 4ery_A 20 AGHTKAVSSVKFSP------NGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSDS-------------NL 79 (312)
T ss_dssp CCCSSCEEEEEECT------TSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTS-------------SE
T ss_pred cccCCcEEEEEECC------CCCEEEEeeCCCeEEEEeCCCcc-cchhhccCCCceEEEEEcCCC-------------CE
Confidence 35678899999963 23678888889999999998754 566677888999999887643 45
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecC--cEEEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP--RIVAVG 215 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~--~~LaV~ 215 (627)
|+... .+++|++||+++++.+.+++. ...|.++.+++ ++|+++
T Consensus 80 l~s~~----------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 125 (312)
T 4ery_A 80 LVSAS----------------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125 (312)
T ss_dssp EEEEE----------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred EEEEC----------------------------------CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 55432 136799999999999999984 56899999987 677776
Q ss_pred e-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCC
Q 046828 216 L-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTS 294 (627)
Q Consensus 216 ~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s 294 (627)
. +++|++||+.+++.+..+..|..+ +.. +++.++...
T Consensus 126 ~~d~~i~iwd~~~~~~~~~~~~~~~~-------------v~~-------~~~~~~~~~---------------------- 163 (312)
T 4ery_A 126 SFDESVRIWDVKTGKCLKTLPAHSDP-------------VSA-------VHFNRDGSL---------------------- 163 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSC-------------EEE-------EEECTTSSE----------------------
T ss_pred eCCCcEEEEECCCCEEEEEecCCCCc-------------EEE-------EEEcCCCCE----------------------
Confidence 5 568999999999988887665433 222 333322100
Q ss_pred CCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 295 PSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 295 ~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
+ ..+..||.|+|||+.+
T Consensus 164 -----------------l----------------------------------------------~~~~~d~~i~~wd~~~ 180 (312)
T 4ery_A 164 -----------------I----------------------------------------------VSSSYDGLCRIWDTAS 180 (312)
T ss_dssp -----------------E----------------------------------------------EEEETTSCEEEEETTT
T ss_pred -----------------E----------------------------------------------EEEeCCCcEEEEECCC
Confidence 0 0234689999999999
Q ss_pred CeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCc--
Q 046828 375 RSVISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAV-- 451 (627)
Q Consensus 375 ~~~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~-- 451 (627)
++.+..+. .|..+|.+++|+|+|++|++++.||+ |+|||+. ++ ..+..+ .++....
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~iwd~~-------~~------------~~~~~~-~~~~~~~~~ 239 (312)
T 4ery_A 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYS-------KG------------KCLKTY-TGHKNEKYC 239 (312)
T ss_dssp CCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTE-EEEEETT-------TT------------EEEEEE-CSSCCSSSC
T ss_pred CceeeEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECC-------CC------------cEEEEE-EecCCceEE
Confidence 98887765 56788999999999999999999997 8999986 23 133333 4554322
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccccc
Q 046828 452 IQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSH 493 (627)
Q Consensus 452 I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~ 493 (627)
+....+.+++++|++++.||+|+||++........+..|...
T Consensus 240 ~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~ 281 (312)
T 4ery_A 240 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281 (312)
T ss_dssp CCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSC
T ss_pred EEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCc
Confidence 333334478999999999999999999876666666677543
No 18
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.92 E-value=4.6e-22 Score=207.74 Aligned_cols=259 Identities=17% Similarity=0.176 Sum_probs=173.9
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC------CceEEeeecCCceEEEEEeeCCCCCCCCCCcC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT------NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFR 133 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~------~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~ 133 (627)
.|.+.|..+.|........+.+.++..+.|+.++|||+.... .....+..|.+.|..+.+.|..
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~---------- 88 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN---------- 88 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST----------
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC----------
Confidence 477889888884221111134678888889999999997632 1234566788899988887642
Q ss_pred CCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--c
Q 046828 134 NSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--R 210 (627)
Q Consensus 134 ~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~ 210 (627)
.+|+... .+++|+|||+++++.++++. +...|++|+|++ +
T Consensus 89 ---~~l~s~s----------------------------------~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~ 131 (343)
T 2xzm_R 89 ---CFAISSS----------------------------------WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131 (343)
T ss_dssp ---TEEEEEE----------------------------------TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTT
T ss_pred ---CEEEEEc----------------------------------CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCC
Confidence 4554322 24789999999999999998 556999999997 5
Q ss_pred EEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSV 289 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~ 289 (627)
.|+++. +++|++||+.. +....+...... ...+ ..++|.+...... .
T Consensus 132 ~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~-------------~~~v----~~~~~~~~~~~~~---~----------- 179 (343)
T 2xzm_R 132 QILSAGAEREIKLWNILG-ECKFSSAEKENH-------------SDWV----SCVRYSPIMKSAN---K----------- 179 (343)
T ss_dssp EEEEEETTSCEEEEESSS-CEEEECCTTTSC-------------SSCE----EEEEECCCCCSCS---C-----------
T ss_pred EEEEEcCCCEEEEEeccC-CceeeeecccCC-------------Ccee----eeeeecccccccc---c-----------
Confidence 777665 66899999973 333332211000 0001 2344443211000 0
Q ss_pred CCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE
Q 046828 290 SPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV 369 (627)
Q Consensus 290 s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I 369 (627)
+ .|. +. ....++.||.|+|
T Consensus 180 -------------------------------------~-------~~~--------------~~---~l~s~~~d~~i~i 198 (343)
T 2xzm_R 180 -------------------------------------V-------QPF--------------AP---YFASVGWDGRLKV 198 (343)
T ss_dssp -------------------------------------C-------CSS--------------CC---EEEEEETTSEEEE
T ss_pred -------------------------------------c-------CCC--------------CC---EEEEEcCCCEEEE
Confidence 0 000 00 0013467999999
Q ss_pred EECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCc
Q 046828 370 KDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTS 449 (627)
Q Consensus 370 wD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~ 449 (627)
|| ...+.+..+.+|..+|.+++|+|+|++||+++.||+ |+|||+... +. ....+..+
T Consensus 199 wd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~-v~iwd~~~~------~~------------~~~~~~~~--- 255 (343)
T 2xzm_R 199 WN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK-LLIWDILNL------TY------------PQREFDAG--- 255 (343)
T ss_dssp EE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE-EEEEESSCC------SS------------CSEEEECS---
T ss_pred Ec-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe-EEEEECCCC------cc------------cceeecCC---
Confidence 99 456778889999999999999999999999999998 899998411 10 11222222
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 450 AVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 450 a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
..|.+++|+||+++|+++ .|++|+||++....
T Consensus 256 ~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 256 STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQS 287 (343)
T ss_dssp SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCC
T ss_pred CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCC
Confidence 349999999999998765 57789999997644
No 19
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.92 E-value=9.6e-23 Score=209.59 Aligned_cols=220 Identities=14% Similarity=0.186 Sum_probs=168.3
Q ss_pred ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEE
Q 046828 103 VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAV 182 (627)
Q Consensus 103 ~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV 182 (627)
....+..|.+.|..+.+.|.. ++|+... .+++|
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~-------------~~l~s~~----------------------------------~dg~v 37 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTE-------------PWVLTTL----------------------------------YSGRV 37 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSS-------------SEEEEEE----------------------------------TTSEE
T ss_pred eEEeecCCCCceEEEEECCCC-------------CEEEEEc----------------------------------CCCcE
Confidence 456788899999999998753 6765432 13789
Q ss_pred EEEECCCCceEEEEec-CCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceee
Q 046828 183 RFYSLRSHNYVHVLRF-RSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMA 258 (627)
Q Consensus 183 ~lwdl~t~~~V~tL~f-~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iA 258 (627)
+|||+++++.++++.. ..+|.+++|++ ++|+++. +++|++||+.+++.+.++.+|..+ +..+
T Consensus 38 ~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~-------------v~~~- 103 (304)
T 2ynn_A 38 ELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY-------------IRSI- 103 (304)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC-------------EEEE-
T ss_pred EEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCc-------------EEEE-
Confidence 9999999999999985 45999999987 6787776 558999999999999999888654 2233
Q ss_pred EcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCC
Q 046828 259 VGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDG 338 (627)
Q Consensus 259 l~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g 338 (627)
++.++... +
T Consensus 104 ------~~~~~~~~---------------------------------------l-------------------------- 112 (304)
T 2ynn_A 104 ------AVHPTKPY---------------------------------------V-------------------------- 112 (304)
T ss_dssp ------EECSSSSE---------------------------------------E--------------------------
T ss_pred ------EEcCCCCE---------------------------------------E--------------------------
Confidence 33332100 0
Q ss_pred CCCCccCCCccccCcccccccCCCCCCeEEEEECCCC-eEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCC
Q 046828 339 SSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR-SVISQFRAHTSPISALCFDR-SGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 339 ~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~ 416 (627)
.+++.||+|+|||+.++ .....+.+|..+|.+++|+| ++.+||+++.||+ |+|||+.
T Consensus 113 --------------------~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~-v~iwd~~ 171 (304)
T 2ynn_A 113 --------------------LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT-VKVWSLG 171 (304)
T ss_dssp --------------------EEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE-EEEEETT
T ss_pred --------------------EEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe-EEEEECC
Confidence 02357899999999887 55678899999999999999 6899999999998 8999985
Q ss_pred CCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEcc--CCCEEEEEeCCCeEEEEEcCCCCCeeecccccccc
Q 046828 417 PSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSH--YSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHV 494 (627)
Q Consensus 417 p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSp--Dg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v 494 (627)
. +. ....+..++. ..|..++|+| |+++|++++.|++|+||++........+..|...+
T Consensus 172 -~------~~------------~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v 231 (304)
T 2ynn_A 172 -Q------ST------------PNFTLTTGQE-RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231 (304)
T ss_dssp -C------SS------------CSEEEECCCT-TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred -C------CC------------ccceeccCCc-CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCE
Confidence 1 21 2334444443 3588999987 88999999999999999998766566677776544
Q ss_pred c
Q 046828 495 D 495 (627)
Q Consensus 495 ~ 495 (627)
.
T Consensus 232 ~ 232 (304)
T 2ynn_A 232 S 232 (304)
T ss_dssp E
T ss_pred E
Confidence 3
No 20
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.92 E-value=5e-22 Score=209.37 Aligned_cols=235 Identities=12% Similarity=0.104 Sum_probs=176.0
Q ss_pred CcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-----CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 63 DQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-----NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 63 d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-----~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
..|..+.|.. .+..+++.|.++.++||++.... .....+..|.+.|..+.+.|.. .
T Consensus 107 ~~v~~~~~sp------~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------------~ 167 (354)
T 2pbi_B 107 TWVMACAYAP------SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-------------M 167 (354)
T ss_dssp SCCCEEEECT------TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-------------S
T ss_pred CCEEEEEECC------CCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-------------C
Confidence 3455556542 34778889999999999997532 2244566788999888887643 3
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecC----cEE
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP----RIV 212 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~----~~L 212 (627)
.|+..+ .+++|++||+++++.++++.. ...|.++.+++ ++|
T Consensus 168 ~l~t~s----------------------------------~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 168 QILTAS----------------------------------GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp EEEEEE----------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EEEEEe----------------------------------CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 444322 137899999999999999984 55899999865 577
Q ss_pred EEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCC
Q 046828 213 AVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSP 291 (627)
Q Consensus 213 aV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~ 291 (627)
+++. +++|++||+.+++.+.++.+|..+ +..+++ .++...
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~-------------v~~v~~-------~p~~~~------------------- 254 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESD-------------VNSVRY-------YPSGDA------------------- 254 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSC-------------EEEEEE-------CTTSSE-------------------
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCC-------------eEEEEE-------eCCCCE-------------------
Confidence 7775 568999999999998888776543 333333 321100
Q ss_pred CCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEE
Q 046828 292 STSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKD 371 (627)
Q Consensus 292 ~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD 371 (627)
+ +.++.||.|+|||
T Consensus 255 --------------------l----------------------------------------------~s~s~D~~v~lwd 268 (354)
T 2pbi_B 255 --------------------F----------------------------------------------ASGSDDATCRLYD 268 (354)
T ss_dssp --------------------E----------------------------------------------EEEETTSCEEEEE
T ss_pred --------------------E----------------------------------------------EEEeCCCeEEEEE
Confidence 0 0234789999999
Q ss_pred CCCCeEEEEeccC--CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCc
Q 046828 372 IVSRSVISQFRAH--TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTS 449 (627)
Q Consensus 372 ~~s~~~l~~~~aH--~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~ 449 (627)
+.+.+.+..+..+ ...+.+++|+|+|++|++++.||+ |+|||+. ++. .+..+ .||..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~-i~vwd~~-------~~~------------~~~~l-~~h~~ 327 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT-INVWDVL-------KGS------------RVSIL-FGHEN 327 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC-EEEEETT-------TCS------------EEEEE-CCCSS
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc-EEEEECC-------CCc------------eEEEE-ECCCC
Confidence 9999888777654 357999999999999999999998 8999985 232 44444 57754
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 450 AVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 450 a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
.|.+++||||+++||+++.||+|+||+
T Consensus 328 -~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 328 -RVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 699999999999999999999999995
No 21
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.91 E-value=3.5e-22 Score=212.09 Aligned_cols=275 Identities=11% Similarity=0.099 Sum_probs=184.0
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.|.+.|..+.|.. ..+.++..+.|+.++|||+.+.. ....+..|...|..+.+.|.. .+|
T Consensus 64 gH~~~V~~~~~sp------~~~~l~s~s~D~~v~iWd~~~~~-~~~~~~~h~~~v~~~~~s~~g-------------~~l 123 (380)
T 3iz6_a 64 GHSGKVYSLDWTP------EKNWIVSASQDGRLIVWNALTSQ-KTHAIKLHCPWVMECAFAPNG-------------QSV 123 (380)
T ss_dssp CCSSCEEEEEECT------TSSCEEEEETTSEEEEEETTTTE-EEEEEECCCTTCCCCEECTTS-------------SEE
T ss_pred ccccEEEEEEEcC------CCCEEEEEeCCCeEEEEECCCCc-cceEEecCCCCEEEEEECCCC-------------CEE
Confidence 4678899999963 23678889999999999998754 344556677788777776543 444
Q ss_pred EEEEccCccC----------Cc--ce-eeeccCcccccCCCCCC---CCCCCCcCCcEEEEEECCCCceEEEEe------
Q 046828 140 LVVACDEAKN----------SG--LV-HVHVGRDGLVRDGYDEP---QPGNVAMSPTAVRFYSLRSHNYVHVLR------ 197 (627)
Q Consensus 140 avv~~d~~~~----------~g--~~-~~~~~~~~~~~~g~~~~---~~~~~~~~~~tV~lwdl~t~~~V~tL~------ 197 (627)
+..+.|..-. .+ +. ..+....+.+..-.+.| ....+...+++|++||+++++.+..+.
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~ 203 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSG 203 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSS
T ss_pred EEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCC
Confidence 4332222100 00 00 00000000000000001 001123457899999999999998883
Q ss_pred cCCeEEEEEecC---cEEEEEe-CCeEEEEeCC-CCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCC
Q 046828 198 FRSTVYMVRCSP---RIVAVGL-AAQIYCFDAL-TLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPL 272 (627)
Q Consensus 198 f~s~V~sV~~s~---~~LaV~~-~~~I~i~D~~-t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~ 272 (627)
+...|.++.+++ ++|+++. ++.|++||+. +.+.+.++.+|..+ +..+++ .++...
T Consensus 204 h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~-------------v~~v~~-------~p~~~~ 263 (380)
T 3iz6_a 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD-------------INSVKF-------FPDGQR 263 (380)
T ss_dssp CCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC-------------CCEEEE-------CTTSSE
T ss_pred CccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCC-------------eEEEEE-------ecCCCe
Confidence 345899999964 6777775 5689999998 45666777776543 223333 321100
Q ss_pred cCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccC
Q 046828 273 LPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAG 352 (627)
Q Consensus 273 v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g 352 (627)
T Consensus 264 -------------------------------------------------------------------------------- 263 (380)
T 3iz6_a 264 -------------------------------------------------------------------------------- 263 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCeEEEEECCCCeEEEEeccCCC-------CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCC
Q 046828 353 RNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTS-------PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSG 425 (627)
Q Consensus 353 ~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~-------~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g 425 (627)
+ .+++.||+|+|||+.+++.+..+..|.. .|.+++|+|+|++|++++.||+ |+|||+. .+
T Consensus 264 -l----~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-i~vwd~~-------~~ 330 (380)
T 3iz6_a 264 -F----GTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD-CYVWDTL-------LA 330 (380)
T ss_dssp -E----EEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC-EEEEETT-------TC
T ss_pred -E----EEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC-EEEEECC-------CC
Confidence 0 1245789999999999999888876543 4899999999999999999998 8999985 22
Q ss_pred CCccccCCCCceeEEEEE---eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 426 SASQTYDWTSSHVHLYKL---HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 426 ~~~~~~~~~~~~~~l~~l---~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
. .+..+ ..+|. ..|.+++||||+++|++++.||+|+||++..
T Consensus 331 ~------------~~~~~~~~~~~h~-~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 331 E------------MVLNLGTLQNSHE-GRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp C------------EEEEECCSCSSCC-CCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred c------------eEEEEecccCCCC-CceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 1 34443 24554 4599999999999999999999999999864
No 22
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.91 E-value=5.1e-22 Score=208.11 Aligned_cols=257 Identities=15% Similarity=0.191 Sum_probs=176.2
Q ss_pred CCC-cEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCc--eEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 61 LKD-QVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNV--SELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 61 ~~d-~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~--~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
+.+ .|..+.|.. .++.+++.|.|+.++|||++..... ..+...|.+.|..+.+.|.. .
T Consensus 14 h~~~~v~~l~~sp------~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-------------~ 74 (345)
T 3fm0_A 14 HPDSRCWFLAWNP------AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG-------------N 74 (345)
T ss_dssp STTSCEEEEEECT------TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS-------------S
T ss_pred CCCCcEEEEEECC------CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC-------------C
Confidence 445 677788853 2367888899999999999875422 12335688899999987643 5
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc--eEEEEe-cCCeEEEEEecC--cEE
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN--YVHVLR-FRSTVYMVRCSP--RIV 212 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~--~V~tL~-f~s~V~sV~~s~--~~L 212 (627)
+|+... .+++|+|||+.+++ .+.+++ +...|.+|+|++ ++|
T Consensus 75 ~l~s~s----------------------------------~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l 120 (345)
T 3fm0_A 75 YLASAS----------------------------------FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL 120 (345)
T ss_dssp EEEEEE----------------------------------TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEEEEE----------------------------------CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEE
Confidence 665432 13669999998874 567777 456999999997 678
Q ss_pred EEEe-CCeEEEEeCCCCcee---EEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCC
Q 046828 213 AVGL-AAQIYCFDALTLESK---FSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPS 288 (627)
Q Consensus 213 aV~~-~~~I~i~D~~t~e~~---~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~ 288 (627)
+++. ++.|++||+.+.+.. ..+.+|..+ +. .+++.++...
T Consensus 121 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~-------------v~-------~~~~~p~~~~---------------- 164 (345)
T 3fm0_A 121 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD-------------VK-------HVVWHPSQEL---------------- 164 (345)
T ss_dssp EEEETTSCEEEEEECTTSCEEEEEEECCCCSC-------------EE-------EEEECSSSSC----------------
T ss_pred EEEECCCeEEEEECCCCCCeEEEEEecCcCCC-------------eE-------EEEECCCCCE----------------
Confidence 8776 558999999876543 333334322 11 2333332100
Q ss_pred CCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEE
Q 046828 289 VSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVV 368 (627)
Q Consensus 289 ~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~ 368 (627)
+ +.++.||.|+
T Consensus 165 -----------------------------------------------------------------l----~s~s~d~~i~ 175 (345)
T 3fm0_A 165 -----------------------------------------------------------------L----ASASYDDTVK 175 (345)
T ss_dssp -----------------------------------------------------------------E----EEEETTSCEE
T ss_pred -----------------------------------------------------------------E----EEEeCCCcEE
Confidence 0 1235789999
Q ss_pred EEECCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeec
Q 046828 369 VKDIVSRS--VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRG 446 (627)
Q Consensus 369 IwD~~s~~--~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG 446 (627)
|||+.+++ .+..+.+|..+|.+|+|+|+|++||+++.||+ |+|||+...... .+. ...........+..+ .|
T Consensus 176 ~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~~~--~~~--~~~~~~~~~~~~~~~-~~ 249 (345)
T 3fm0_A 176 LYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQYLPGNE--QGV--ACSGSDPSWKCICTL-SG 249 (345)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEECTTCT--TCC--CCC---CEEEEEEEE-CS
T ss_pred EEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccccCCCC--ccc--eeeccCCccceeEEe-cC
Confidence 99998875 45788999999999999999999999999998 899997311100 000 000000111233333 45
Q ss_pred CCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 447 MTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 447 ~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.....|++|+|+|++..||+++.|++|+||++.+.
T Consensus 250 ~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 250 FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 44556999999999999999999999999998764
No 23
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.91 E-value=8.9e-22 Score=209.93 Aligned_cols=243 Identities=13% Similarity=0.156 Sum_probs=174.8
Q ss_pred EEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEc
Q 046828 65 VLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVAC 144 (627)
Q Consensus 65 V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~ 144 (627)
|..+.|.. ..+.+++.+.++.++|||++... ....+..|.+.|..+.+.|.. .+|+...
T Consensus 126 v~~v~~s~------dg~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~-------------~~l~s~s- 184 (393)
T 1erj_A 126 IRSVCFSP------DGKFLATGAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSG-------------DKLVSGS- 184 (393)
T ss_dssp EEEEEECT------TSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTS-------------SEEEEEE-
T ss_pred EEEEEECC------CCCEEEEEcCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCC-------------CEEEEec-
Confidence 66677753 23677888889999999999744 455667789999999987642 4554322
Q ss_pred cCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC---cEEEEEe-CCeE
Q 046828 145 DEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP---RIVAVGL-AAQI 220 (627)
Q Consensus 145 d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~---~~LaV~~-~~~I 220 (627)
.+++|++||+++++.+.++.++..|..+++++ ++|+++. ++.|
T Consensus 185 ---------------------------------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v 231 (393)
T 1erj_A 185 ---------------------------------GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 231 (393)
T ss_dssp ---------------------------------TTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred ---------------------------------CCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence 13789999999999999999999999999986 6787775 5689
Q ss_pred EEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcc
Q 046828 221 YCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNL 300 (627)
Q Consensus 221 ~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~ 300 (627)
++||+.+++.+..+....... .+. ...+ .-|++.++...
T Consensus 232 ~iwd~~~~~~~~~~~~~~~~~---~~h------~~~v----~~v~~~~~g~~---------------------------- 270 (393)
T 1erj_A 232 RVWDSETGFLVERLDSENESG---TGH------KDSV----YSVVFTRDGQS---------------------------- 270 (393)
T ss_dssp EEEETTTCCEEEEEC---------CCC------SSCE----EEEEECTTSSE----------------------------
T ss_pred EEEECCCCcEEEeecccccCC---CCC------CCCE----EEEEECCCCCE----------------------------
Confidence 999999998776663211000 000 0000 12333321100
Q ss_pred cchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC-----
Q 046828 301 MARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR----- 375 (627)
Q Consensus 301 v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~----- 375 (627)
+ ..++.||.|+|||+.+.
T Consensus 271 -----------------------------------------------------l----~s~s~d~~v~~wd~~~~~~~~~ 293 (393)
T 1erj_A 271 -----------------------------------------------------V----VSGSLDRSVKLWNLQNANNKSD 293 (393)
T ss_dssp -----------------------------------------------------E----EEEETTSEEEEEEC--------
T ss_pred -----------------------------------------------------E----EEEeCCCEEEEEECCCCCCccc
Confidence 0 12457899999998753
Q ss_pred -------eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCC
Q 046828 376 -------SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMT 448 (627)
Q Consensus 376 -------~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t 448 (627)
.....+.+|...|.+++|+|+|.+|++++.||+ |+|||+. ++. .+..+ +||.
T Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-v~iwd~~-------~~~------------~~~~l-~~h~ 352 (393)
T 1erj_A 294 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKK-------SGN------------PLLML-QGHR 352 (393)
T ss_dssp -------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETT-------TCC------------EEEEE-ECCS
T ss_pred ccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe-EEEEECC-------CCe------------EEEEE-CCCC
Confidence 346678899999999999999999999999997 8999986 332 44444 6776
Q ss_pred cCcEEEEEEcc------CCCEEEEEeCCCeEEEEEcCCC
Q 046828 449 SAVIQDICFSH------YSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 449 ~a~I~sIaFSp------Dg~~Las~S~dgTvhIw~i~~~ 481 (627)
. .|.+++|++ |+++||+++.||+|+||++...
T Consensus 353 ~-~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 353 N-SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp S-CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred C-CEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 4 599999986 7899999999999999998643
No 24
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.91 E-value=9.2e-22 Score=211.16 Aligned_cols=273 Identities=14% Similarity=0.135 Sum_probs=188.5
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEee--ecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeecc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVS--RRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVG 158 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells--~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~ 158 (627)
..+|++|.++.++|||++++. +.+++. .|.+.|.+|++.|.. .+||+..
T Consensus 116 ~n~lAvgld~tV~lWd~~tg~-~~~~~~~~~~~~~V~sv~fspdg-------------~~lasgs--------------- 166 (420)
T 4gga_A 116 GNVLAVALDNSVYLWSASSGD-ILQLLQMEQPGEYISSVAWIKEG-------------NYLAVGT--------------- 166 (420)
T ss_dssp TSEEEEEETTEEEEEETTTCC-EEEEEECCSTTCCEEEEEECTTS-------------SEEEEEE---------------
T ss_pred CCEEEEEeCCEEEEEECCCCC-EEEEEEecCCCCcEEEEEECCCC-------------CEEEEEE---------------
Confidence 569999999999999999854 556554 456789999987642 5665432
Q ss_pred CcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecCcEEEEEeC-CeEEEEeCCCCc-eeEEEE
Q 046828 159 RDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSPRIVAVGLA-AQIYCFDALTLE-SKFSVL 235 (627)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~~~LaV~~~-~~I~i~D~~t~e-~~~tl~ 235 (627)
.+++|+|||+++++.++++..+ ..|.++.+++++|+++.. +.|++||..+.. .+.++.
T Consensus 167 -------------------~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~ 227 (420)
T 4gga_A 167 -------------------SSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 227 (420)
T ss_dssp -------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred -------------------CCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEec
Confidence 1367999999999999999854 599999999999998864 589999988754 445666
Q ss_pred cCCCCCCCCCCCcCcccccceeeEc--CceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhh
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVG--PRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLA 313 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~--~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~ 313 (627)
+|... ...+.+. .++|+.+..+..+.+|.....+.... ..
T Consensus 228 ~h~~~-------------~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~-------------------------~~ 269 (420)
T 4gga_A 228 GHSQE-------------VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-------------------------PL 269 (420)
T ss_dssp CCSSC-------------EEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC-------------------------CS
T ss_pred ccccc-------------eeeeeecCCCCeeeeeeccccceEEeeccccccce-------------------------ee
Confidence 66543 2234443 37888887766554432211000000 00
Q ss_pred cceeecCCcce-eEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEE
Q 046828 314 AGLINLGDMGY-KTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALC 392 (627)
Q Consensus 314 ~gl~~lg~~g~-~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~la 392 (627)
. ...++.+. ..+ .+ .|++ ...+.+ ..+..|+.|+|||+.+++.+..+..| ..+.++.
T Consensus 270 ~--~~~~~~~~V~~~-~~----~p~~------------~~~la~--~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~ 327 (420)
T 4gga_A 270 Q--TFTQHQGAVKAV-AW----CPWQ------------SNVLAT--GGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL 327 (420)
T ss_dssp E--EECCCSSCEEEE-EE----CTTC------------TTEEEE--EECTTTCEEEEEETTTTEEEEEEECS-SCEEEEE
T ss_pred e--eecccCCceeee-ee----CCCc------------ccEEEE--EeecCCCEEEEEeCCccccceeeccc-cceeeee
Confidence 0 00011110 001 00 0110 000110 13568999999999999999888876 4688999
Q ss_pred ECCCCCEEEEEe--CCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC
Q 046828 393 FDRSGTLLVTAS--IHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR 470 (627)
Q Consensus 393 FspdG~lLaTaS--~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d 470 (627)
|+|++..|++++ .||+ |+|||+. ++ ..+.++ +||+. .|.+|+|||||++||+++.|
T Consensus 328 ~~~~~~~lv~~sg~~d~~-I~iwd~~-------~~------------~~v~~l-~gH~~-~V~~l~~spdg~~l~S~s~D 385 (420)
T 4gga_A 328 WSPHYKELISGHGFAQNQ-LVIWKYP-------TM------------AKVAEL-KGHTS-RVLSLTMSPDGATVASAAAD 385 (420)
T ss_dssp EETTTTEEEEEECTTTCC-EEEEETT-------TC------------CEEEEE-CCCSS-CEEEEEECTTSSCEEEEETT
T ss_pred ecCCCCeEEEEEecCCCE-EEEEECC-------CC------------cEEEEE-cCCCC-CEEEEEEcCCCCEEEEEecC
Confidence 999999999876 6888 8999985 33 256666 68864 69999999999999999999
Q ss_pred CeEEEEEcCCCCC
Q 046828 471 GTCHIFVLTPFGG 483 (627)
Q Consensus 471 gTvhIw~i~~~gg 483 (627)
|||+||++.....
T Consensus 386 ~tvriWdv~~~~~ 398 (420)
T 4gga_A 386 ETLRLWRCFELDP 398 (420)
T ss_dssp TEEEEECCSCSSC
T ss_pred CeEEEEECCCCCc
Confidence 9999999976543
No 25
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.91 E-value=4.6e-22 Score=224.90 Aligned_cols=257 Identities=14% Similarity=0.124 Sum_probs=182.7
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC-ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN-VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~-~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.|.+.|..+.|.. +++.++..+.++.++|||+..... ....+..|.++|..+.+.|.. .+
T Consensus 57 ~h~~~v~~~~~sp------dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg-------------~~ 117 (611)
T 1nr0_A 57 EHSHQTTVAKTSP------SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES-------------KR 117 (611)
T ss_dssp CCSSCEEEEEECT------TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS-------------CE
T ss_pred CCCCceEEEEECC------CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCC-------------CE
Confidence 4677888899953 246778888899999999976442 234566788999999988643 45
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecCc---EEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSPR---IVAV 214 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~~---~LaV 214 (627)
|+.++.+.. ...+|++|| +++.++++.. ...|.+|+|++. +|++
T Consensus 118 l~~~~~~~~------------------------------~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s 165 (611)
T 1nr0_A 118 IAAVGEGRE------------------------------RFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIIS 165 (611)
T ss_dssp EEEEECCSS------------------------------CSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEE
T ss_pred EEEEECCCC------------------------------ceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEE
Confidence 665431100 125688888 5667777774 459999999982 5777
Q ss_pred Ee-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPST 293 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~ 293 (627)
+. ++.|++||..+++.+.++.+|..+ +..+ +|.++...
T Consensus 166 ~s~D~~v~lwd~~~~~~~~~l~~H~~~-------------V~~v-------~fspdg~~--------------------- 204 (611)
T 1nr0_A 166 GSDDNTVAIFEGPPFKFKSTFGEHTKF-------------VHSV-------RYNPDGSL--------------------- 204 (611)
T ss_dssp EETTSCEEEEETTTBEEEEEECCCSSC-------------EEEE-------EECTTSSE---------------------
T ss_pred EeCCCeEEEEECCCCeEeeeeccccCc-------------eEEE-------EECCCCCE---------------------
Confidence 76 557999999999888888777543 3333 33332100
Q ss_pred CCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC
Q 046828 294 SPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV 373 (627)
Q Consensus 294 s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~ 373 (627)
+ ++++.||+|+|||+.
T Consensus 205 ------------------l----------------------------------------------as~s~D~~i~lwd~~ 220 (611)
T 1nr0_A 205 ------------------F----------------------------------------------ASTGGDGTIVLYNGV 220 (611)
T ss_dssp ------------------E----------------------------------------------EEEETTSCEEEEETT
T ss_pred ------------------E----------------------------------------------EEEECCCcEEEEECC
Confidence 0 023478999999999
Q ss_pred CCeEEEEec-------cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccC--------------
Q 046828 374 SRSVISQFR-------AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYD-------------- 432 (627)
Q Consensus 374 s~~~l~~~~-------aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~-------------- 432 (627)
+++.+..+. +|..+|.+++|+|||++|||++.||+ |+|||+. . +.......
T Consensus 221 ~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~-v~lWd~~-~------~~~~~~~~~~~~~~~~~~~~~~ 292 (611)
T 1nr0_A 221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVA-T------LKVEKTIPVGTRIEDQQLGIIW 292 (611)
T ss_dssp TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETT-T------TEEEEEEECCSSGGGCEEEEEE
T ss_pred CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe-EEEEeCC-C------CceeeeecCCCCccceeEEEEE
Confidence 999998884 79999999999999999999999998 8999985 2 11000000
Q ss_pred ---------CCCc-------eeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 433 ---------WTSS-------HVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 433 ---------~~~~-------~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.... .....+...||+. .|.+++|+||+++|++++.|++|++|++...
T Consensus 293 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~-~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 293 TKQALVSISANGFINFVNPELGSIDQVRYGHNK-AITALSSSADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp CSSCEEEEETTCCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC-CEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence 0000 0012223357754 5999999999999999999999999999754
No 26
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.91 E-value=8.5e-23 Score=211.39 Aligned_cols=267 Identities=14% Similarity=0.142 Sum_probs=173.4
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC-ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN-VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~-~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
..|.+.|..+.|+. .++.+++.+.|+.++|||+...+. ....+..|.++|..+.+.|.. + ..
T Consensus 10 ~~H~~~V~~v~~s~------~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~------~-----~~ 72 (316)
T 3bg1_A 10 TSHEDMIHDAQMDY------YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM------Y-----GN 72 (316)
T ss_dssp ----CCEEEEEECG------GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG------G-----SS
T ss_pred ccccCeEEEeeEcC------CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC------C-----CC
Confidence 45788999999974 236788888899999999987542 234456789999999986521 0 13
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc--eEEEEe-cCCeEEEEEecC----c
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN--YVHVLR-FRSTVYMVRCSP----R 210 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~--~V~tL~-f~s~V~sV~~s~----~ 210 (627)
+|+.++ .+++|+|||+++++ .+.++. +...|.+|+|++ .
T Consensus 73 ~l~s~s----------------------------------~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~ 118 (316)
T 3bg1_A 73 ILASCS----------------------------------YDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGL 118 (316)
T ss_dssp CEEEEE----------------------------------TTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCS
T ss_pred EEEEEE----------------------------------CCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCc
Confidence 555432 13679999999884 566665 556999999987 3
Q ss_pred EEEEEe-CCeEEEEeCCCCcee---EEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLESK---FSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTP 286 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~~---~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~ 286 (627)
+|+++. ++.|++||+.+.+.. ..+.+|..+ +..+++ .+.... +
T Consensus 119 ~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~-------------v~~~~~-------~~~~~~----~--------- 165 (316)
T 3bg1_A 119 ILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG-------------CNAVSW-------APAVVP----G--------- 165 (316)
T ss_dssp CEEEECSSSCEEEEEECSSSCEEECCBTTSSSSC-------------BCCCEE-------CCCCCC--------------
T ss_pred EEEEEcCCCCEEEEecCCCCCcceeeeeccccCC-------------cceEEE-------ccccCC----c---------
Confidence 677775 568999999876422 111122211 222333 321100 0
Q ss_pred CCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCe
Q 046828 287 PSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGM 366 (627)
Q Consensus 287 ~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~ 366 (627)
.++ . .+.+.. ++ .+. ..+.++.||.
T Consensus 166 ------------~~~------------~--------------------~~~~~~----~~----~~~---~l~sgs~D~~ 190 (316)
T 3bg1_A 166 ------------SLI------------D--------------------HPSGQK----PN----YIK---RFASGGCDNL 190 (316)
T ss_dssp -------------------------------------------------CCSCC----CC----CCC---BEECCBTTSB
T ss_pred ------------ccc------------c--------------------cccccC----cc----ccc---eEEEecCCCe
Confidence 000 0 000000 00 000 0124678999
Q ss_pred EEEEECCCC---eEEEEeccCCCCeEEEEECCCC----CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 367 VVVKDIVSR---SVISQFRAHTSPISALCFDRSG----TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 367 V~IwD~~s~---~~l~~~~aH~~~Is~laFspdG----~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
|+|||+... +.+..|.+|..+|.+++|+|++ .+||+++.||+ |+||++.... .+. +. ..
T Consensus 191 v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~-v~iw~~~~~~----~~~------~~---~~ 256 (316)
T 3bg1_A 191 IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR-VFIWTCDDAS----SNT------WS---PK 256 (316)
T ss_dssp CCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE-EEEEECSSTT----CCC------CB---CC
T ss_pred EEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe-EEEEEccCcc----ccc------hh---hh
Confidence 999999765 4677899999999999999997 89999999998 8999985210 010 00 01
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
+ + .++. ..|.+++|+||+++||+++.||+|+||+....+
T Consensus 257 ~--~-~~~~-~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g 295 (316)
T 3bg1_A 257 L--L-HKFN-DVVWHVSWSITANILAVSGGDNKVTLWKESVDG 295 (316)
T ss_dssp E--E-EECS-SCEEEEEECTTTCCEEEEESSSCEEEEEECTTS
T ss_pred h--h-hcCC-CcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCC
Confidence 1 1 2333 469999999999999999999999999987543
No 27
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.91 E-value=1.7e-22 Score=208.20 Aligned_cols=274 Identities=12% Similarity=0.121 Sum_probs=178.3
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEee-CCCCCCCCCCcCCCCCE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQP-LPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp-~p~~~~~~D~f~~~rpL 138 (627)
.+.+.|..+.|... .....+.+++.+.++.++|||++... ....+..|.++|..+.+.| .. .+
T Consensus 67 ~~~~~v~~~~~~~~--~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~-------------~~ 130 (366)
T 3k26_A 67 DADENFYTCAWTYD--SNTSHPLLAVAGSRGIIRIINPITMQ-CIKHYVGHGNAINELKFHPRDP-------------NL 130 (366)
T ss_dssp CTTCCEEEEEEEEC--TTTCCEEEEEEETTCEEEEECTTTCC-EEEEEESCCSCEEEEEECSSCT-------------TE
T ss_pred CCCCcEEEEEeccC--CCCCCCEEEEecCCCEEEEEEchhce-EeeeecCCCCcEEEEEECCCCC-------------CE
Confidence 46677888888643 11113566667777789999999855 4455667889999999987 33 45
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEE----ecCCeEEEEEecC--cEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVL----RFRSTVYMVRCSP--RIV 212 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL----~f~s~V~sV~~s~--~~L 212 (627)
|+... .+++|++||+++++.+..+ .+...|.++++++ +.|
T Consensus 131 l~s~~----------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 176 (366)
T 3k26_A 131 LLSVS----------------------------------KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI 176 (366)
T ss_dssp EEEEE----------------------------------TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEE
T ss_pred EEEEe----------------------------------CCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEE
Confidence 54432 1266999999999999998 3667999999986 677
Q ss_pred EEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCC
Q 046828 213 AVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSP 291 (627)
Q Consensus 213 aV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~ 291 (627)
+++. ++.|++||+.+++.+..+..... +......+++............ ...+.
T Consensus 177 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~------ 231 (366)
T 3k26_A 177 MSCGMDHSLKLWRINSKRMMNAIKESYD-----------------YNPNKTNRPFISQKIHFPDFST--RDIHR------ 231 (366)
T ss_dssp EEEETTSCEEEEESCSHHHHHHHHHHHT-----------------CCGGGCSSCCCCEEECCCSEEE--CSSCS------
T ss_pred EEecCCCCEEEEECCCCccccccceeEE-----------------ecCCCCcccccceeeccCcccc--ccCCc------
Confidence 7765 56899999998876544432100 0000001111100000000000 00000
Q ss_pred CCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEE
Q 046828 292 STSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKD 371 (627)
Q Consensus 292 ~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD 371 (627)
..+..+.+.+ ..+ ..+..+|.|++||
T Consensus 232 -------------------~~v~~~~~~~-------------------------------~~l----~~~~~d~~i~~wd 257 (366)
T 3k26_A 232 -------------------NYVDCVRWLG-------------------------------DLI----LSKSCENAIVCWK 257 (366)
T ss_dssp -------------------SCCCEEEEET-------------------------------TEE----EEECSSSEEEEEE
T ss_pred -------------------ceEEEEEEcC-------------------------------CEE----EEEecCCEEEEEe
Confidence 0000000000 001 1356799999999
Q ss_pred CCCCe--------------EEEEeccCCCCeEEEEECCC--CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 372 IVSRS--------------VISQFRAHTSPISALCFDRS--GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 372 ~~s~~--------------~l~~~~aH~~~Is~laFspd--G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
+.+++ .+..+..|..+|.+++|+|+ |++|++++.||+ |+|||+. .+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~-i~vwd~~-------~~~~-------- 321 (366)
T 3k26_A 258 PGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK-LYVWDLE-------VEDP-------- 321 (366)
T ss_dssp ESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC-EEEEECC-------SSSG--------
T ss_pred CCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc-EEEEECC-------CCCC--------
Confidence 98764 48889999999999999999 999999999998 8999986 2210
Q ss_pred ceeEEEEEeecCC-cCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 436 SHVHLYKLHRGMT-SAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 436 ~~~~l~~l~rG~t-~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
....+..+ .++. ...|.+++|+||+++|++++.||+|+||++.
T Consensus 322 ~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 322 HKAKCTTL-THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GGCEEEEE-CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccceEE-cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 00133344 4542 3469999999999999999999999999985
No 28
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.90 E-value=2.3e-21 Score=196.37 Aligned_cols=278 Identities=14% Similarity=0.171 Sum_probs=179.1
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC---ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN---VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNS 135 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~---~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~ 135 (627)
..|++.|..+.|.. ..+.+++.+.++.++|||+..... ....+..|.++|..+.+.|.. |
T Consensus 8 ~gH~~~v~~~~~~~------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------d----- 70 (351)
T 3f3f_A 8 SGHDDLVHDVVYDF------YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE------Y----- 70 (351)
T ss_dssp CCCSSCEEEEEECS------SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG------G-----
T ss_pred cccccceeEEEEcC------CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC------C-----
Confidence 45788999999964 236677788888899999997553 233445688999999998631 0
Q ss_pred CCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCC---------ceEEEEe-cCCeEEEE
Q 046828 136 HPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSH---------NYVHVLR-FRSTVYMV 205 (627)
Q Consensus 136 rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~---------~~V~tL~-f~s~V~sV 205 (627)
..+|+... .+++|++||++++ +.+.++. +...|.++
T Consensus 71 ~~~l~s~~----------------------------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 116 (351)
T 3f3f_A 71 GRIIASAS----------------------------------YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSV 116 (351)
T ss_dssp CSEEEEEE----------------------------------TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEE
T ss_pred CCEEEEEc----------------------------------CCCeEEEEecCCCcccccccCcceeeeecccCCceeEE
Confidence 14555432 1366999999987 5577776 55699999
Q ss_pred EecCc----EEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeE-------cCceEEEcCCCCCc
Q 046828 206 RCSPR----IVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAV-------GPRWLAYASNNPLL 273 (627)
Q Consensus 206 ~~s~~----~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl-------~~r~LAy~~~~~~v 273 (627)
++++. +|+++. ++.|++||+.+++.+..+..... ...+.+ ....+++.+..
T Consensus 117 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~p~~--- 179 (351)
T 3f3f_A 117 KFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE--------------MKVLSIPPANHLQSDFCLSWCPSR--- 179 (351)
T ss_dssp EECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE--------------EESCSCCCSSCSCCCEEEEECCCS---
T ss_pred EEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccc--------------ccccccccCCcccceeEEEeccCC---
Confidence 99863 676665 66899999998876533321000 000000 00112222110
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCc
Q 046828 274 PNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGR 353 (627)
Q Consensus 274 ~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~ 353 (627)
+....
T Consensus 180 ---------------------------------------------------------------------------~~~~~ 184 (351)
T 3f3f_A 180 ---------------------------------------------------------------------------FSPEK 184 (351)
T ss_dssp ---------------------------------------------------------------------------SSCCE
T ss_pred ---------------------------------------------------------------------------CCCcE
Confidence 00000
Q ss_pred ccccccCCCCCCeEEEEECCCCeE--EEEeccCCCCeEEEEECCCC----CEEEEEeCCCCEEEEEeCCCCCCCCC----
Q 046828 354 NASHSSDTDIAGMVVVKDIVSRSV--ISQFRAHTSPISALCFDRSG----TLLVTASIHGNNINIFRIMPSSSKGR---- 423 (627)
Q Consensus 354 ~~~~~~~~~~dG~V~IwD~~s~~~--l~~~~aH~~~Is~laFspdG----~lLaTaS~dGt~I~Vwdi~p~~~~~~---- 423 (627)
+ ..+..++.+.+|+...++. +..+.+|..+|.+++|+|+| .+|++++.||+ |+|||+........
T Consensus 185 l----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~ 259 (351)
T 3f3f_A 185 L----AVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR-IRIFKITEKLSPLASEES 259 (351)
T ss_dssp E----EEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC-EEEEEEEECC--------
T ss_pred E----EEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe-EEEEeCCCCcCccccCCc
Confidence 1 1235678888888877764 77888999999999999999 89999999998 89999862100000
Q ss_pred -----------------CCCCc-----cccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 424 -----------------SGSAS-----QTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 424 -----------------~g~~~-----~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+... ....+...........++|. ..|.+++|+||+++|++++.||+|+||+++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 260 LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN-GEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp -------------------------------CCSEEEEEEEEECTTS-SCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred ccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc-ccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 00000 00000011112333335665 35999999999999999999999999999875
Q ss_pred CCee
Q 046828 482 GGET 485 (627)
Q Consensus 482 gg~~ 485 (627)
....
T Consensus 339 ~~~~ 342 (351)
T 3f3f_A 339 NEFK 342 (351)
T ss_dssp SCEE
T ss_pred cchh
Confidence 5443
No 29
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.90 E-value=6.7e-22 Score=223.56 Aligned_cols=241 Identities=13% Similarity=0.151 Sum_probs=175.0
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.++.++.-+.|.. + .+.|+.+.++.++|||+.+.. ....+..|.+.|.++++.|.- .+|
T Consensus 16 ~~~g~~~~~~~sp------d-g~~l~~~~~~~v~l~~~~~~~-~~~~~~~h~~~v~~~~~spdg-------------~~l 74 (611)
T 1nr0_A 16 TARGTAVVLGNTP------A-GDKIQYCNGTSVYTVPVGSLT-DTEIYTEHSHQTTVAKTSPSG-------------YYC 74 (611)
T ss_dssp CCTTCCCCCEECT------T-SSEEEEEETTEEEEEETTCSS-CCEEECCCSSCEEEEEECTTS-------------SEE
T ss_pred cccCceeEEeeCC------C-CCEEEeCCCCEEEEecCCCcc-cCeEecCCCCceEEEEECCCC-------------cEE
Confidence 3455566666742 1 235555668899999998654 456677899999999998743 566
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc--eEEEEe-cCCeEEEEEecC--cEEEE
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN--YVHVLR-FRSTVYMVRCSP--RIVAV 214 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~--~V~tL~-f~s~V~sV~~s~--~~LaV 214 (627)
|... .+++|+|||+.+++ ...++. +..+|.+|+|++ ++|++
T Consensus 75 asg~----------------------------------~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~ 120 (611)
T 1nr0_A 75 ASGD----------------------------------VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAA 120 (611)
T ss_dssp EEEE----------------------------------TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEE
T ss_pred EEEe----------------------------------CCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEE
Confidence 5422 23789999998654 445666 556999999998 67776
Q ss_pred EeCC-----eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCC
Q 046828 215 GLAA-----QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSV 289 (627)
Q Consensus 215 ~~~~-----~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~ 289 (627)
+.++ .|++|| +++.+.++.+|..+ +. .+++.++.+.
T Consensus 121 ~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~-------------v~-------~v~f~p~~~~----------------- 161 (611)
T 1nr0_A 121 VGEGRERFGHVFLFD--TGTSNGNLTGQARA-------------MN-------SVDFKPSRPF----------------- 161 (611)
T ss_dssp EECCSSCSEEEEETT--TCCBCBCCCCCSSC-------------EE-------EEEECSSSSC-----------------
T ss_pred EECCCCceeEEEEee--CCCCcceecCCCCC-------------ce-------EEEECCCCCe-----------------
Confidence 6543 588887 45555555555432 22 2344332100
Q ss_pred CCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE
Q 046828 290 SPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV 369 (627)
Q Consensus 290 s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I 369 (627)
.+ ..++.|+.|+|
T Consensus 162 ---------------------------------------------------------------~l----~s~s~D~~v~l 174 (611)
T 1nr0_A 162 ---------------------------------------------------------------RI----ISGSDDNTVAI 174 (611)
T ss_dssp ---------------------------------------------------------------EE----EEEETTSCEEE
T ss_pred ---------------------------------------------------------------EE----EEEeCCCeEEE
Confidence 00 12457899999
Q ss_pred EECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee----
Q 046828 370 KDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR---- 445 (627)
Q Consensus 370 wD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r---- 445 (627)
||..+++.+..|.+|...|.+++|+|||++|||++.||+ |+|||+. +|. .+..+..
T Consensus 175 wd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~-i~lwd~~-------~g~------------~~~~~~~~~~~ 234 (611)
T 1nr0_A 175 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGV-------DGT------------KTGVFEDDSLK 234 (611)
T ss_dssp EETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETT-------TCC------------EEEECBCTTSS
T ss_pred EECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCc-EEEEECC-------CCc------------Eeeeecccccc
Confidence 999999999999999999999999999999999999998 8999985 332 4444433
Q ss_pred --cCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 446 --GMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 446 --G~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
||+ ..|.+++|+||+++||+++.|++|+||++....
T Consensus 235 ~~~h~-~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~ 272 (611)
T 1nr0_A 235 NVAHS-GSVFGLTWSPDGTKIASASADKTIKIWNVATLK 272 (611)
T ss_dssp SCSSS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred ccccC-CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 565 359999999999999999999999999997643
No 30
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.90 E-value=2.1e-21 Score=214.64 Aligned_cols=230 Identities=14% Similarity=0.215 Sum_probs=170.6
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEE
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLV 141 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlav 141 (627)
.+.|.-+.|.. ..+.+++.+.++.+++||.+ ++..+.+..|.+.|+.+.+.|.. .+|+.
T Consensus 344 ~~~v~~~~~s~------~g~~l~~~~~dg~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~dg-------------~~l~~ 402 (577)
T 2ymu_A 344 SSSVWGVAFSP------DGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDG-------------QTIAS 402 (577)
T ss_dssp SSCEEEEEECT------TSSEEEEEETTSEEEEEETT--CCEEEEEECCSSCEEEEEECTTS-------------SCEEE
T ss_pred CCCEEEEEECC------CCCEEEEEeCCCEEEEEcCC--CCEEEEecCCCCCeEEEEECCCC-------------CEEEE
Confidence 34455555532 23566666677779999965 34466677788999999887642 44554
Q ss_pred EEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe-C
Q 046828 142 VACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL-A 217 (627)
Q Consensus 142 v~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~-~ 217 (627)
.. .+++|+||| .+++.++++. +...|.+++|++ ++|+++. +
T Consensus 403 ~~----------------------------------~d~~v~~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 403 AS----------------------------------DDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp EE----------------------------------TTSEEEEEC-TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred Ee----------------------------------CCCEEEEEe-CCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence 32 136799999 4678888887 556999999997 6888776 5
Q ss_pred CeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCC
Q 046828 218 AQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSN 297 (627)
Q Consensus 218 ~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~ 297 (627)
++|++||+ +++.+.++.+|..+ +.. +++.++...
T Consensus 448 ~~v~~w~~-~~~~~~~~~~~~~~-------------v~~-------~~~spd~~~------------------------- 481 (577)
T 2ymu_A 448 KTVKLWNR-NGQLLQTLTGHSSS-------------VRG-------VAFSPDGQT------------------------- 481 (577)
T ss_dssp SEEEEEET-TSCEEEEEECCSSC-------------EEE-------EEECTTSCE-------------------------
T ss_pred CEEEEEEC-CCCEEEEEcCCCCC-------------EEE-------EEEcCCCCE-------------------------
Confidence 58999996 56777788776543 222 344332100
Q ss_pred CcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeE
Q 046828 298 GNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSV 377 (627)
Q Consensus 298 gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~ 377 (627)
+ +.+..|+.|+|||. +++.
T Consensus 482 --------------l----------------------------------------------as~~~d~~i~iw~~-~~~~ 500 (577)
T 2ymu_A 482 --------------I----------------------------------------------ASASDDKTVKLWNR-NGQL 500 (577)
T ss_dssp --------------E----------------------------------------------EEEETTSEEEEEET-TSCE
T ss_pred --------------E----------------------------------------------EEEeCCCEEEEEcC-CCCE
Confidence 0 01346899999995 6788
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEE
Q 046828 378 ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICF 457 (627)
Q Consensus 378 l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaF 457 (627)
+..+.+|..+|.+|+|+|||++||+++.||+ |+|||.. | ..+..+ +||. ..|.+|+|
T Consensus 501 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~-v~lwd~~--------~------------~~~~~~-~~h~-~~v~~~~f 557 (577)
T 2ymu_A 501 LQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNRN--------G------------QLLQTL-TGHS-SSVWGVAF 557 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSSCEEEEETTSE-EEEECTT--------S------------CEEEEE-ECCS-SCEEEEEE
T ss_pred EEEEeCCCCCEEEEEEcCCCCEEEEEECcCE-EEEEeCC--------C------------CEEEEE-cCCC-CCEEEEEE
Confidence 9999999999999999999999999999997 8999963 2 145555 6775 46999999
Q ss_pred ccCCCEEEEEeCCCeEEEEE
Q 046828 458 SHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 458 SpDg~~Las~S~dgTvhIw~ 477 (627)
+||+++|++++.|++|+||+
T Consensus 558 s~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 558 SPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CTTSSCEEEEETTSCEEEEC
T ss_pred cCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999999996
No 31
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.9e-21 Score=196.42 Aligned_cols=264 Identities=9% Similarity=0.084 Sum_probs=189.4
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
..+.+.|..+.|.. ..+.+++.+.++.++|||+.+.. ....+..|.+.|..+.+.|.. .+
T Consensus 29 ~~h~~~v~~~~~s~------~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~-------------~~ 88 (369)
T 3zwl_B 29 TGHERPLTQVKYNK------EGDLLFSCSKDSSASVWYSLNGE-RLGTLDGHTGTIWSIDVDCFT-------------KY 88 (369)
T ss_dssp ECCSSCEEEEEECT------TSCEEEEEESSSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTS-------------SE
T ss_pred EEeeceEEEEEEcC------CCCEEEEEeCCCEEEEEeCCCch-hhhhhhhcCCcEEEEEEcCCC-------------CE
Confidence 34677888899863 23567777778889999999855 455666788999999987642 45
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL 216 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~ 216 (627)
|+.+. .+++|++||+++++.+.++.+...|.++.+++ +.|+++.
T Consensus 89 l~s~~----------------------------------~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 134 (369)
T 3zwl_B 89 CVTGS----------------------------------ADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAIL 134 (369)
T ss_dssp EEEEE----------------------------------TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEe----------------------------------CCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEec
Confidence 55432 13679999999999999999999999999997 6777765
Q ss_pred C------CeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeE-----cCceEEEcCCCCCcCCCCccCCCCCC
Q 046828 217 A------AQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAV-----GPRWLAYASNNPLLPNTGRLSPQSLT 285 (627)
Q Consensus 217 ~------~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl-----~~r~LAy~~~~~~v~~~gr~~~q~~t 285 (627)
. +.|++||+.+.+....+....... ...+.. ....+++.++
T Consensus 135 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~---------------- 186 (369)
T 3zwl_B 135 DNVMKNPGSINIYEIERDSATHELTKVSEEP------------IHKIITHEGLDAATVAGWSTK---------------- 186 (369)
T ss_dssp CCBTTBCCEEEEEEEEECTTTCCEEEECSSC------------SEEEECCTTCCCEEEEEECGG----------------
T ss_pred CCccCCCCEEEEEEecCCccceeecccccce------------eeeccCCcCccceeEEEEcCC----------------
Confidence 4 689999988766443332211100 000000 0011111110
Q ss_pred CCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCC
Q 046828 286 PPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAG 365 (627)
Q Consensus 286 ~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG 365 (627)
+.. ...+..+|
T Consensus 187 ------------------------------------------------------------------~~~---l~~~~~dg 197 (369)
T 3zwl_B 187 ------------------------------------------------------------------GKY---IIAGHKDG 197 (369)
T ss_dssp ------------------------------------------------------------------GCE---EEEEETTS
T ss_pred ------------------------------------------------------------------CCE---EEEEcCCC
Confidence 000 01235789
Q ss_pred eEEEEECCC-CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q 046828 366 MVVVKDIVS-RSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH 444 (627)
Q Consensus 366 ~V~IwD~~s-~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~ 444 (627)
.|++||+.+ .+.+..+..|..+|.+++|+|+|.+|++++.||+ |+|||+. ++. .+..+.
T Consensus 198 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~v~d~~-------~~~------------~~~~~~ 257 (369)
T 3zwl_B 198 KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN-SFLVDVS-------TLQ------------VLKKYE 257 (369)
T ss_dssp EEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEETT-------TCC------------EEEEEE
T ss_pred EEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCce-EEEEECC-------CCc------------eeeeec
Confidence 999999999 7889999999999999999999999999999997 8999986 231 444443
Q ss_pred ecCCcCcEEEEEEccCCCEEEEEeCCC--------------eEEEEEcCCCCCeeecccccccccC
Q 046828 445 RGMTSAVIQDICFSHYSQWIAIVSSRG--------------TCHIFVLTPFGGETVLQIQNSHVDR 496 (627)
Q Consensus 445 rG~t~a~I~sIaFSpDg~~Las~S~dg--------------TvhIw~i~~~gg~~~~~~h~s~v~~ 496 (627)
....|..++|+|++++|++++.++ ++++|++........+..|...+..
T Consensus 258 ---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~ 320 (369)
T 3zwl_B 258 ---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNT 320 (369)
T ss_dssp ---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred ---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEE
Confidence 234599999999999999999999 8999998877666666667654433
No 32
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.90 E-value=3.2e-21 Score=213.20 Aligned_cols=249 Identities=14% Similarity=0.164 Sum_probs=180.9
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
+.+.|..+.|.. ..+.++..+.++.+++||++... .+.+..|...|..+.+.|.. .+|+
T Consensus 302 h~~~v~~~~~~~------~~~~l~t~~~d~~i~~w~~~~~~--~~~~~~~~~~v~~~~~s~~g-------------~~l~ 360 (577)
T 2ymu_A 302 HSSSVWGVAFSP------DGQTIASASDDKTVKLWNRNGQH--LQTLTGHSSSVWGVAFSPDG-------------QTIA 360 (577)
T ss_dssp CSSCEEEEEECT------TSSEEEEEETTSCEEEEETTSCE--EEEECCCSSCEEEEEECTTS-------------SEEE
T ss_pred CCCCeEEEEECC------CCCEEEEEeCCCeEEEEeCCCCe--eEEEeCCCCCEEEEEECCCC-------------CEEE
Confidence 345566666642 23677778888899999987533 45556678888888876643 4554
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe-
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL- 216 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~- 216 (627)
... .+++|++|| .+++.+.++. +...|.+|++++ ++|+++.
T Consensus 361 ~~~----------------------------------~dg~v~~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~ 405 (577)
T 2ymu_A 361 SAS----------------------------------DDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 405 (577)
T ss_dssp EEE----------------------------------TTSEEEEEE-TTCCEEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred EEe----------------------------------CCCEEEEEc-CCCCEEEEecCCCCCeEEEEECCCCCEEEEEeC
Confidence 322 136799999 4778888887 556999999997 6777775
Q ss_pred CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCC
Q 046828 217 AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPS 296 (627)
Q Consensus 217 ~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s 296 (627)
++.|++||. +++.+.++.+|..+ +.. |++.+++..
T Consensus 406 d~~v~~~~~-~~~~~~~~~~~~~~-------------v~~-------~~~s~d~~~------------------------ 440 (577)
T 2ymu_A 406 DKTVKLWNR-NGQLLQTLTGHSSS-------------VWG-------VAFSPDDQT------------------------ 440 (577)
T ss_dssp TSEEEEECT-TCCEEEEEECCSSC-------------EEE-------EEECTTSSE------------------------
T ss_pred CCEEEEEeC-CCCEEEEecCCCCC-------------eEE-------EEECCCCCE------------------------
Confidence 557999995 56777888776543 222 344332110
Q ss_pred CCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe
Q 046828 297 NGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS 376 (627)
Q Consensus 297 ~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~ 376 (627)
+ +.+..|+.|++||. +++
T Consensus 441 ---------------l----------------------------------------------~~~~~d~~v~~w~~-~~~ 458 (577)
T 2ymu_A 441 ---------------I----------------------------------------------ASASDDKTVKLWNR-NGQ 458 (577)
T ss_dssp ---------------E----------------------------------------------EEEETTSEEEEEET-TSC
T ss_pred ---------------E----------------------------------------------EEEcCCCEEEEEEC-CCC
Confidence 0 01346889999996 467
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEE
Q 046828 377 VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDIC 456 (627)
Q Consensus 377 ~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIa 456 (627)
.+..+.+|..+|.+++|+|||++||+++.||+ |+|||.. | ..+..+ .||. ..|.+|+
T Consensus 459 ~~~~~~~~~~~v~~~~~spd~~~las~~~d~~-i~iw~~~--------~------------~~~~~~-~~h~-~~v~~l~ 515 (577)
T 2ymu_A 459 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNRN--------G------------QLLQTL-TGHS-SSVRGVA 515 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEETTSE-EEEEETT--------S------------CEEEEE-ECCS-SCEEEEE
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE-EEEEcCC--------C------------CEEEEE-eCCC-CCEEEEE
Confidence 88899999999999999999999999999997 8999963 2 144444 5765 4599999
Q ss_pred EccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccccC
Q 046828 457 FSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDR 496 (627)
Q Consensus 457 FSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~ 496 (627)
||||+++||+++.||+|+||+.+ ......+..|...+..
T Consensus 516 ~s~dg~~l~s~~~dg~v~lwd~~-~~~~~~~~~h~~~v~~ 554 (577)
T 2ymu_A 516 FSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWG 554 (577)
T ss_dssp ECTTSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEE
T ss_pred EcCCCCEEEEEECcCEEEEEeCC-CCEEEEEcCCCCCEEE
Confidence 99999999999999999999963 3334456777665543
No 33
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.2e-21 Score=200.69 Aligned_cols=263 Identities=11% Similarity=0.109 Sum_probs=177.3
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
..|++.|..+.|.. ..+.+++.+.++.++|||++... .....+..|.++|.++.+.+... ..
T Consensus 8 ~~h~~~v~~~~~s~------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-----------~~ 70 (379)
T 3jrp_A 8 NAHNELIHDAVLDY------YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF-----------GT 70 (379)
T ss_dssp EECCCCEEEEEECS------SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGG-----------CS
T ss_pred cCCcccEEEEEEcC------CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCC-----------CC
Confidence 45778899999964 23567777778889999998432 23445667889999999875421 14
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc--eEEEEe-cCCeEEEEEecCc----
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN--YVHVLR-FRSTVYMVRCSPR---- 210 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~--~V~tL~-f~s~V~sV~~s~~---- 210 (627)
+|+.+. .+++|++||+++++ .+..+. +...|.++++++.
T Consensus 71 ~l~s~~----------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 116 (379)
T 3jrp_A 71 ILASCS----------------------------------YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP 116 (379)
T ss_dssp EEEEEE----------------------------------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS
T ss_pred EEEEec----------------------------------cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCC
Confidence 555432 12569999999997 666666 5569999999864
Q ss_pred EEEEEe-CCeEEEEeCCCCce--eEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLES--KFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPP 287 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~--~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~ 287 (627)
+|+++. ++.|++||+.+.+. ...+..|..+ +.. +++.+..... .+..
T Consensus 117 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-------------v~~-------~~~~~~~~~~--~~~~-------- 166 (379)
T 3jrp_A 117 LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------VNS-------ASWAPATIEE--DGEH-------- 166 (379)
T ss_dssp EEEEEETTSEEEEEECCTTSCCCEEEEECCTTC-------------EEE-------EEECCCC-----------------
T ss_pred EEEEecCCCcEEEEecCCCCceeeEEecCCCCc-------------eEE-------EEEcCccccc--cccc--------
Confidence 666665 66899999998754 3344444332 222 3333311000 0000
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeE
Q 046828 288 SVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMV 367 (627)
Q Consensus 288 ~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V 367 (627)
. + .+++ ..+ ..+..||.|
T Consensus 167 ------------------------~-------~--------------~~~~-------------~~l----~~~~~dg~i 184 (379)
T 3jrp_A 167 ------------------------N-------G--------------TKES-------------RKF----VTGGADNLV 184 (379)
T ss_dssp ------------------------------------------------CTT-------------CEE----EEEETTSCE
T ss_pred ------------------------c-------C--------------CCCC-------------CEE----EEEeCCCeE
Confidence 0 0 0000 001 134578999
Q ss_pred EEEECCCCe----EEEEeccCCCCeEEEEECCC---CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 368 VVKDIVSRS----VISQFRAHTSPISALCFDRS---GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 368 ~IwD~~s~~----~l~~~~aH~~~Is~laFspd---G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
+|||+.+++ .+..+.+|..+|.+++|+|+ |.+|++++.||+ |+|||+.. +.. ...
T Consensus 185 ~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~-i~iwd~~~-------~~~----------~~~ 246 (379)
T 3jrp_A 185 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDN-------EQG----------PWK 246 (379)
T ss_dssp EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESS-------TTS----------CCE
T ss_pred EEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE-EEEEeCCC-------CCc----------cce
Confidence 999998763 56788899999999999999 999999999998 79999862 110 011
Q ss_pred EEEeec-CCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 441 YKLHRG-MTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 441 ~~l~rG-~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
..+... .....|.+++|+||+++|++++.||+|+||++...+
T Consensus 247 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 247 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 222221 123459999999999999999999999999998543
No 34
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.5e-21 Score=203.25 Aligned_cols=245 Identities=10% Similarity=0.091 Sum_probs=164.7
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC------CceEEeeecCCceEEEEEeeCCCCCCCCCCcCC
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT------NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRN 134 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~------~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~ 134 (627)
+++.|..+.|.. ..+.+++.+.++.++|||++... +....+..|.+.|..+.+.|..
T Consensus 57 h~~~v~~v~~sp------~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g----------- 119 (330)
T 2hes_X 57 HKKAIRSVAWRP------HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG----------- 119 (330)
T ss_dssp CCSCEEEEEECT------TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-----------
T ss_pred ccCCEEEEEECC------CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-----------
Confidence 677888899963 23677788889999999996421 2344566788999999987643
Q ss_pred CCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCC----CceEEEEe-cCCeEEEEEecC
Q 046828 135 SHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRS----HNYVHVLR-FRSTVYMVRCSP 209 (627)
Q Consensus 135 ~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t----~~~V~tL~-f~s~V~sV~~s~ 209 (627)
.+|+.+. .+++|+|||++. .+.+.+++ +...|.+|+|++
T Consensus 120 --~~las~s----------------------------------~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p 163 (330)
T 2hes_X 120 --YYLATCS----------------------------------RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP 163 (330)
T ss_dssp --CEEEEEE----------------------------------TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS
T ss_pred --CEEEEEe----------------------------------CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC
Confidence 4565432 136799999953 25677776 456999999987
Q ss_pred --cEEEEEe-CCeEEEEeCCCC--ceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCC
Q 046828 210 --RIVAVGL-AAQIYCFDALTL--ESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSL 284 (627)
Q Consensus 210 --~~LaV~~-~~~I~i~D~~t~--e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~ 284 (627)
++|+++. ++.|++||..+. +++.++.+|..+ +.. +++.++...
T Consensus 164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~-------------v~~-------~~~~~~~~~------------ 211 (330)
T 2hes_X 164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGT-------------VWS-------SDFDKTEGV------------ 211 (330)
T ss_dssp SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------------EEE-------EEECCSSSS------------
T ss_pred CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCc-------------EEE-------EEecCCCCe------------
Confidence 6787776 568999998776 566667666543 222 333331100
Q ss_pred CCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCC
Q 046828 285 TPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIA 364 (627)
Q Consensus 285 t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~d 364 (627)
. . + .+++.|
T Consensus 212 --------------~-------------------------~----------------------------l----~s~s~D 220 (330)
T 2hes_X 212 --------------F-------------------------R----------------------------L----CSGSDD 220 (330)
T ss_dssp --------------C-------------------------E----------------------------E----EEEETT
T ss_pred --------------e-------------------------E----------------------------E----EEEeCC
Confidence 0 0 0 124578
Q ss_pred CeEEEEECCCC--------eEEEEecc-CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 365 GMVVVKDIVSR--------SVISQFRA-HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 365 G~V~IwD~~s~--------~~l~~~~a-H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
|+|+|||+.++ ..+..+.. |..+|.+++|++++ +||+++.||+ |+|||+. .+.
T Consensus 221 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~-------~~~--------- 282 (330)
T 2hes_X 221 STVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEV-------DGE--------- 282 (330)
T ss_dssp SCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEE-------TTE---------
T ss_pred CeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcC-------CCc---------
Confidence 99999998754 44556665 99999999999776 8999999998 7999975 221
Q ss_pred ceeEEEEEeecCCcCcEEEEEEcc--CCCEEEEEeCCCeEEEEEcCC
Q 046828 436 SHVHLYKLHRGMTSAVIQDICFSH--YSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 436 ~~~~l~~l~rG~t~a~I~sIaFSp--Dg~~Las~S~dgTvhIw~i~~ 480 (627)
...+.....+|....|.+++|+| |+++||+++.||+|+||+++.
T Consensus 283 -~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 283 -WKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -EEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred -eEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 01233333566544699999999 799999999999999999864
No 35
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.89 E-value=9.9e-21 Score=192.58 Aligned_cols=240 Identities=15% Similarity=0.168 Sum_probs=172.7
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEE--ee--ecCCceEEEEEeeCCCCCCCCCCcCCC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSEL--VS--RRDDPVTFLQMQPLPAKSDGQEGFRNS 135 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~el--ls--~~dG~V~~v~~lp~p~~~~~~D~f~~~ 135 (627)
.+.+.|..+.|.. ..+.++..+ ++.++|||++..+....+ +. .|.+.|..+.+.|..
T Consensus 49 ~h~~~v~~~~~~~------~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------ 109 (337)
T 1gxr_A 49 NHGEVVCAVTISN------PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG------------ 109 (337)
T ss_dssp CCSSCCCEEEECS------SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS------------
T ss_pred cCCCceEEEEEec------CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC------------
Confidence 4566777788753 124455555 999999999876533222 22 577888888887643
Q ss_pred CCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc--eEEEEe-cCCeEEEEEecC--c
Q 046828 136 HPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN--YVHVLR-FRSTVYMVRCSP--R 210 (627)
Q Consensus 136 rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~--~V~tL~-f~s~V~sV~~s~--~ 210 (627)
.+|++.. .+++|++||+++++ .+..+. +...|.++.+++ +
T Consensus 110 -~~l~~~~----------------------------------~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 154 (337)
T 1gxr_A 110 -CTLIVGG----------------------------------EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK 154 (337)
T ss_dssp -SEEEEEE----------------------------------SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS
T ss_pred -CEEEEEc----------------------------------CCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCC
Confidence 4555432 13679999999988 455555 345899999987 6
Q ss_pred EEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSV 289 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~ 289 (627)
+|+++. ++.|++||+.+++.+..+..|..+ ... +++.++...
T Consensus 155 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~-------------i~~-------~~~~~~~~~----------------- 197 (337)
T 1gxr_A 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-------------ASC-------IDISNDGTK----------------- 197 (337)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEE-------EEECTTSSE-----------------
T ss_pred EEEEEeCCCcEEEEeCCCCceeeeeecccCc-------------eEE-------EEECCCCCE-----------------
Confidence 777775 568999999999888887665432 222 333322100
Q ss_pred CCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE
Q 046828 290 SPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV 369 (627)
Q Consensus 290 s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I 369 (627)
+ ..+..+|.|++
T Consensus 198 ----------------------l----------------------------------------------~~~~~dg~i~~ 209 (337)
T 1gxr_A 198 ----------------------L----------------------------------------------WTGGLDNTVRS 209 (337)
T ss_dssp ----------------------E----------------------------------------------EEEETTSEEEE
T ss_pred ----------------------E----------------------------------------------EEEecCCcEEE
Confidence 0 01246899999
Q ss_pred EECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCc
Q 046828 370 KDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTS 449 (627)
Q Consensus 370 wD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~ 449 (627)
||+.+++.+..+. |..+|.+++|+|+|++|++++.+|+ |++||+. .+ ...++ .++.
T Consensus 210 ~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~-i~~~~~~-------~~-------------~~~~~-~~~~- 265 (337)
T 1gxr_A 210 WDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVN-------KP-------------DKYQL-HLHE- 265 (337)
T ss_dssp EETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSC-EEEEETT-------SS-------------CEEEE-CCCS-
T ss_pred EECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCc-EEEEECC-------CC-------------CeEEE-cCCc-
Confidence 9999998887765 7889999999999999999999998 7999986 22 22333 3443
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 450 AVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 450 a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
..|.+++|+||+++|++++.||+|++|++....
T Consensus 266 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred cceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence 459999999999999999999999999997643
No 36
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.89 E-value=2.1e-20 Score=189.35 Aligned_cols=270 Identities=13% Similarity=0.124 Sum_probs=182.7
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEee--ecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeecc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVS--RRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVG 158 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells--~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~ 158 (627)
..+|++|.|+.++|||++++. +.+++. .|.+.|.++.+.|.. .+|+..+
T Consensus 36 ~~~lAvg~D~tV~iWd~~tg~-~~~~~~~~~~~~~V~~v~~~~~~-------------~~l~sgs--------------- 86 (318)
T 4ggc_A 36 GNVLAVALDNSVYLWSASSGD-ILQLLQMEQPGEYISSVAWIKEG-------------NYLAVGT--------------- 86 (318)
T ss_dssp TSEEEEEETTEEEEEETTTCC-EEEEEECCSTTCCEEEEEECTTS-------------SEEEEEE---------------
T ss_pred CCEEEEEeCCEEEEEECCCCC-EEEEEEecCCCCeEEEEEECCCC-------------CEEEEEE---------------
Confidence 358999999999999999855 445543 466778999887653 5555322
Q ss_pred CcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecCcEEEEEeCC-eEEEEeCCCCc-eeEEEE
Q 046828 159 RDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSPRIVAVGLAA-QIYCFDALTLE-SKFSVL 235 (627)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~~~LaV~~~~-~I~i~D~~t~e-~~~tl~ 235 (627)
.+++|++||+++++.+++++.+ ..+..+...+++|+++..+ .+.+|+..+.. .+.++.
T Consensus 87 -------------------~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~ 147 (318)
T 4ggc_A 87 -------------------SSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 147 (318)
T ss_dssp -------------------TTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred -------------------CCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEc
Confidence 2478999999999999999855 4888899889999988654 78999988764 445566
Q ss_pred cCCCCCCCCCCCcCcccccceeeEc--CceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhh
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVG--PRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLA 313 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~--~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~ 313 (627)
+|... ...+++. ++.|+.+..+..+.+|.....+.... ..
T Consensus 148 ~~~~~-------------~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-------------------------~~ 189 (318)
T 4ggc_A 148 GHSQE-------------VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-------------------------PL 189 (318)
T ss_dssp CCSSC-------------EEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSC-------------------------CS
T ss_pred CccCc-------------eEEEEEcCCCCEEEEEecCcceeEEECCCCccccc-------------------------ce
Confidence 66543 2234443 37888888776665542211000000 00
Q ss_pred cceeecCCcce-eEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEE
Q 046828 314 AGLINLGDMGY-KTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALC 392 (627)
Q Consensus 314 ~gl~~lg~~g~-~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~la 392 (627)
. ....+.+. ..+. + .|++ ..+. ....+..++.|+|||.......... .|..++..++
T Consensus 190 ~--~~~~~~~~v~~~~--~---~~~~-------------~~~~-~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~ 247 (318)
T 4ggc_A 190 Q--TFTQHQGAVKAVA--W---CPWQ-------------SNVL-ATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSIL 247 (318)
T ss_dssp E--EECCCCSCEEEEE--E---CTTS-------------TTEE-EEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEE
T ss_pred e--eecccCCceEEEE--e---cCCC-------------CcEE-EEEecCCCCEEEEEecccccccccc-cceeeeeeee
Confidence 0 00000000 0000 0 0110 0000 0123567899999999988766544 4677899999
Q ss_pred ECCCCCEEEEEe--CCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC
Q 046828 393 FDRSGTLLVTAS--IHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR 470 (627)
Q Consensus 393 FspdG~lLaTaS--~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d 470 (627)
|+|++..+++++ .||+ |+|||+. ++ ..+.++ +||+. .|.+|+|+||+++||++|.|
T Consensus 248 ~~~~~~~~~~~sg~~d~~-i~iwd~~-------~~------------~~~~~l-~gH~~-~V~~l~~spdg~~l~S~s~D 305 (318)
T 4ggc_A 248 WSPHYKELISGHGFAQNQ-LVIWKYP-------TM------------AKVAEL-KGHTS-RVLSLTMSPDGATVASAAAD 305 (318)
T ss_dssp EETTTTEEEEEECTTTCC-EEEEETT-------TC------------CEEEEE-CCCSS-CEEEEEECTTSSCEEEEETT
T ss_pred ecccccceEEEEEcCCCE-EEEEECC-------CC------------cEEEEE-cCCCC-CEEEEEEcCCCCEEEEEecC
Confidence 999999998876 7888 8999985 33 256666 68764 69999999999999999999
Q ss_pred CeEEEEEcCC
Q 046828 471 GTCHIFVLTP 480 (627)
Q Consensus 471 gTvhIw~i~~ 480 (627)
|+|+||++..
T Consensus 306 ~~v~iWd~~~ 315 (318)
T 4ggc_A 306 ETLRLWRCFE 315 (318)
T ss_dssp TEEEEECCSC
T ss_pred CeEEEEECCC
Confidence 9999999864
No 37
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.89 E-value=1.5e-21 Score=200.84 Aligned_cols=289 Identities=14% Similarity=0.129 Sum_probs=191.0
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
..+.+.|..+.|..... .++.+++.+.++.++|||++..+ .+...+..|.++|..+.+.|.. .
T Consensus 36 ~~h~~~v~~~~~~~~~~---~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------------~ 99 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTL---PGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG-------------S 99 (368)
T ss_dssp SCCSSCEEEEEECCTTS---SSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS-------------S
T ss_pred cCCCCceEEEEEcCCCC---CceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC-------------C
Confidence 45678899999974211 13567777778889999999844 3347778899999999988743 4
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEe--cC--cEEE
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRC--SP--RIVA 213 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~--s~--~~La 213 (627)
+|+.+. .+++|++||+++++.+....+...|.++.+ ++ ++|+
T Consensus 100 ~l~s~~----------------------------------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 145 (368)
T 3mmy_A 100 KVFTAS----------------------------------CDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVM 145 (368)
T ss_dssp EEEEEE----------------------------------TTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEE
T ss_pred EEEEEc----------------------------------CCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEE
Confidence 565432 136799999999999998888899999999 65 5566
Q ss_pred EEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCC
Q 046828 214 VGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPS 292 (627)
Q Consensus 214 V~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~ 292 (627)
++. ++.|++||+.+++.+.++..+.. ...+...+..++.+..+..+.++...
T Consensus 146 ~~~~dg~i~vwd~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~~~~~~------------- 198 (368)
T 3mmy_A 146 TGSWDKTLKFWDTRSSNPMMVLQLPER--------------CYCADVIYPMAVVATAERGLIVYQLE------------- 198 (368)
T ss_dssp EEETTSEEEEECSSCSSCSEEEECSSC--------------EEEEEEETTEEEEEEGGGCEEEEECS-------------
T ss_pred EccCCCcEEEEECCCCcEEEEEecCCC--------------ceEEEecCCeeEEEeCCCcEEEEEec-------------
Confidence 665 66899999999998888876432 11233333444444332222211100
Q ss_pred CCCCCCcccchhhhhhhhhhhcceee-cCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEE
Q 046828 293 TSPSNGNLMARYAVESSKQLAAGLIN-LGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKD 371 (627)
Q Consensus 293 ~s~s~gs~v~~~a~~~~k~l~~gl~~-lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD 371 (627)
........+.. ..+. ...+ .++ + +..+.... ...+..+|.|+|||
T Consensus 199 ---------------~~~~~~~~~~~~~~~~-~~~~-~~~----~---------~~~~~~~~----~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 199 ---------------NQPSEFRRIESPLKHQ-HRCV-AIF----K---------DKQNKPTG----FALGSIEGRVAIHY 244 (368)
T ss_dssp ---------------SSCEEEEECCCSCSSC-EEEE-EEE----E---------CTTSCEEE----EEEEETTSEEEEEE
T ss_pred ---------------cccchhhhccccccCC-CceE-EEc----c---------cCCCCCCe----EEEecCCCcEEEEe
Confidence 00000000000 0000 0000 000 0 00000000 12456899999999
Q ss_pred CCCC---eEEEEeccCCC------------CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 372 IVSR---SVISQFRAHTS------------PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 372 ~~s~---~~l~~~~aH~~------------~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
+... +.+..+..|.. +|.+++|+|+|++|++++.||+ |+|||+. ++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~-------~~----------- 305 (368)
T 3mmy_A 245 INPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKD-------AR----------- 305 (368)
T ss_dssp SSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETT-------TT-----------
T ss_pred cCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCe-EEEEECC-------CC-----------
Confidence 9987 56778888876 7999999999999999999998 8999986 23
Q ss_pred eeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 437 HVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
..+..+ .++. ..|.+++|+||+++||+++.|+..+.|++-.
T Consensus 306 -~~~~~~-~~~~-~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 306 -TKLKTS-EQLD-QPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp -EEEEEC-CCCS-SCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred -cEEEEe-cCCC-CCceEEEECCCCCeEEEEecccccccccccC
Confidence 245554 4554 4599999999999999999999777666543
No 38
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.89 E-value=1.4e-20 Score=196.69 Aligned_cols=268 Identities=15% Similarity=0.178 Sum_probs=180.9
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEe------------eecCCceEEEEEeeCCCCCC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELV------------SRRDDPVTFLQMQPLPAKSD 127 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ell------------s~~dG~V~~v~~lp~p~~~~ 127 (627)
.+++.|..+.|... ..+.+++.+.++.++|||++.......+. ..|.+.|..+.+.|..
T Consensus 41 ~h~~~v~~~~~s~~-----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---- 111 (408)
T 4a11_B 41 IHGGGINTLDIEPV-----EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD---- 111 (408)
T ss_dssp CCSSCEEEEEECTT-----TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC----
T ss_pred ccCCcEEEEEEecC-----CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCC----
Confidence 47889999999631 23667778888889999999866433332 1378888888887631
Q ss_pred CCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEe
Q 046828 128 GQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRC 207 (627)
Q Consensus 128 ~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~ 207 (627)
..+|+.+. .+++|++||+++++.+..+.+...+..+.+
T Consensus 112 --------~~~l~s~~----------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 149 (408)
T 4a11_B 112 --------TGMFTSSS----------------------------------FDKTLKVWDTNTLQTADVFNFEETVYSHHM 149 (408)
T ss_dssp --------TTCEEEEE----------------------------------TTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred --------CcEEEEEe----------------------------------CCCeEEEeeCCCCccceeccCCCceeeeEe
Confidence 13444322 137799999999999999999999999999
Q ss_pred cC-----cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCC
Q 046828 208 SP-----RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSP 281 (627)
Q Consensus 208 s~-----~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~ 281 (627)
++ .+|+++. ++.|++||+.+++.+..+..|..+ +..+ ++.++...
T Consensus 150 ~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------------v~~~-------~~~~~~~~--------- 200 (408)
T 4a11_B 150 SPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE-------------ILAV-------SWSPRYDY--------- 200 (408)
T ss_dssp CSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSC-------------EEEE-------EECSSCTT---------
T ss_pred ecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCc-------------EEEE-------EECCCCCc---------
Confidence 76 2677665 568999999999988888766443 2223 33332100
Q ss_pred CCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCC
Q 046828 282 QSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDT 361 (627)
Q Consensus 282 q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~ 361 (627)
+ + ..+
T Consensus 201 ------------------------------l-----------------------------------------l----~~~ 205 (408)
T 4a11_B 201 ------------------------------I-----------------------------------------L----ATA 205 (408)
T ss_dssp ------------------------------E-----------------------------------------E----EEE
T ss_pred ------------------------------E-----------------------------------------E----EEE
Confidence 0 0 023
Q ss_pred CCCCeEEEEECCCCe-EEEEe---------------ccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCC-C
Q 046828 362 DIAGMVVVKDIVSRS-VISQF---------------RAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGR-S 424 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~-~l~~~---------------~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~-~ 424 (627)
..||.|+|||+.+.. .+..+ ..|..+|.+++|+|+|++|++++.||+ |+|||+........ .
T Consensus 206 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~ 284 (408)
T 4a11_B 206 SADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR-MRLWNSSNGENTLVNY 284 (408)
T ss_dssp ETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCBCCCCC
T ss_pred cCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe-EEEEECCCCccceecc
Confidence 467889999987764 44444 678999999999999999999999998 89999862110000 0
Q ss_pred CCCc----c-----------------ccC-----CC-CceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 425 GSAS----Q-----------------TYD-----WT-SSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 425 g~~~----~-----------------~~~-----~~-~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
+... . ..+ |. .....+..+ .++. ..|.+++|+||+++|++++.||+|+||+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 285 GKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML-KGHY-KTVDCCVFQSNFQELYSGSRDCNILAWV 362 (408)
T ss_dssp CCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE-CCCS-SCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee-ccCC-CeEEEEEEcCCCCEEEEECCCCeEEEEe
Confidence 0000 0 000 00 000123333 4554 4599999999999999999999999999
Q ss_pred cCCCCCee
Q 046828 478 LTPFGGET 485 (627)
Q Consensus 478 i~~~gg~~ 485 (627)
+.......
T Consensus 363 ~~~~~~~~ 370 (408)
T 4a11_B 363 PSLYEPVP 370 (408)
T ss_dssp ECC-----
T ss_pred CCCCCccC
Confidence 98765443
No 39
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.89 E-value=9e-21 Score=197.35 Aligned_cols=246 Identities=11% Similarity=0.151 Sum_probs=167.7
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-CceEEe-ee-cCCceEEEEEeeCCCCCCCCCCcCCCC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-NVSELV-SR-RDDPVTFLQMQPLPAKSDGQEGFRNSH 136 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-~~~ell-s~-~dG~V~~v~~lp~p~~~~~~D~f~~~r 136 (627)
.+.+.|..+.|.. ..+++.+.|+.++|||+.... .....+ .. |.+.|..+.+.|..
T Consensus 12 ~h~~~v~~~~~s~--------~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~------------- 70 (330)
T 2hes_X 12 LYKEKIWSFDFSQ--------GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT------------- 70 (330)
T ss_dssp CCSSCEEEEEEET--------TEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS-------------
T ss_pred cCCCceeeeccCC--------CEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC-------------
Confidence 4677888888862 267777888999999998743 223333 23 88899999987643
Q ss_pred CEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCC-------CceEEEEe-cCCeEEEEEec
Q 046828 137 PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRS-------HNYVHVLR-FRSTVYMVRCS 208 (627)
Q Consensus 137 pLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t-------~~~V~tL~-f~s~V~sV~~s 208 (627)
.+|+... .+++|+|||++. .+.+.+++ +...|.+|+|+
T Consensus 71 ~~las~s----------------------------------~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 116 (330)
T 2hes_X 71 SLLAAGS----------------------------------FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS 116 (330)
T ss_dssp SEEEEEE----------------------------------TTSCEEEEEC-------CCCEEEEEEC----CEEEEEEC
T ss_pred CEEEEEe----------------------------------CCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEEC
Confidence 5665432 136799999853 45677776 45699999999
Q ss_pred C--cEEEEEe-CCeEEEEeCCCC----ceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCC
Q 046828 209 P--RIVAVGL-AAQIYCFDALTL----ESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSP 281 (627)
Q Consensus 209 ~--~~LaV~~-~~~I~i~D~~t~----e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~ 281 (627)
+ ++|+++. ++.|+|||+.+. +.+.++.+|..+ +.. +++.++...
T Consensus 117 p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~-------------v~~-------v~~~p~~~~--------- 167 (330)
T 2hes_X 117 NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD-------------VKH-------VIWHPSEAL--------- 167 (330)
T ss_dssp TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC-------------EEE-------EEECSSSSE---------
T ss_pred CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc-------------eEE-------EEECCCCCE---------
Confidence 7 6888876 558999999432 344555555432 222 333332100
Q ss_pred CCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCC
Q 046828 282 QSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDT 361 (627)
Q Consensus 282 q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~ 361 (627)
+ +++
T Consensus 168 ------------------------------------------------------------------------l----~s~ 171 (330)
T 2hes_X 168 ------------------------------------------------------------------------L----ASS 171 (330)
T ss_dssp ------------------------------------------------------------------------E----EEE
T ss_pred ------------------------------------------------------------------------E----EEE
Confidence 0 124
Q ss_pred CCCCeEEEEECCCC--eEEEEeccCCCCeEEEEECCC--CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 362 DIAGMVVVKDIVSR--SVISQFRAHTSPISALCFDRS--GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 362 ~~dG~V~IwD~~s~--~~l~~~~aH~~~Is~laFspd--G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
+.||.|+|||+.++ +++..+.+|..+|.+++|+|+ +.+|++++.||+ |+|||+..... .+ ....
T Consensus 172 s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~~---~~--------~~~~ 239 (330)
T 2hes_X 172 SYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDDE---DD--------QQEW 239 (330)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEECT---TS--------CEEE
T ss_pred cCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCCc---cc--------ccee
Confidence 57899999998876 678899999999999999999 789999999998 89999851100 00 0000
Q ss_pred eEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 438 VHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
..+..+ .+.....|++++|++++ +||+++.||+|+||++.
T Consensus 240 ~~~~~~-~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 240 VCEAIL-PDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEV 279 (330)
T ss_dssp EEEEEC-CSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEE
T ss_pred EEeeec-ccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcC
Confidence 122223 33233469999999765 89999999999999975
No 40
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.4e-21 Score=204.96 Aligned_cols=295 Identities=11% Similarity=0.106 Sum_probs=194.2
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
+.+.|..+.|.. ..+.+++.+.++.++|||.+ ++....+..|.++|..+.+.|.. .+|+
T Consensus 107 ~~~~v~~~~~s~------~~~~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~v~~~~~~~~~-------------~~l~ 165 (425)
T 1r5m_A 107 TTNQVTCLAWSH------DGNSIVTGVENGELRLWNKT--GALLNVLNFHRAPIVSVKWNKDG-------------THII 165 (425)
T ss_dssp -CBCEEEEEECT------TSSEEEEEETTSCEEEEETT--SCEEEEECCCCSCEEEEEECTTS-------------SEEE
T ss_pred CCCceEEEEEcC------CCCEEEEEeCCCeEEEEeCC--CCeeeeccCCCccEEEEEECCCC-------------CEEE
Confidence 455888888864 23567777778889999933 34466677788999999987643 4555
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCC-e---------------EEE
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRS-T---------------VYM 204 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s-~---------------V~s 204 (627)
++. .++.|++||+++++.+..+..+. . |.+
T Consensus 166 ~~~----------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (425)
T 1r5m_A 166 SMD----------------------------------VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVD 211 (425)
T ss_dssp EEE----------------------------------TTCCEEEEETTTTEEEEEECCC---------------CCCBSC
T ss_pred EEe----------------------------------cCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeE
Confidence 432 12569999999999999998655 3 888
Q ss_pred EEecC-cEEEEE-eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccC
Q 046828 205 VRCSP-RIVAVG-LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLS 280 (627)
Q Consensus 205 V~~s~-~~LaV~-~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~ 280 (627)
+.+++ ..++++ .++.|++||+.+++.+..+..|..+ +..+++.| ++|+.+..+..+.+|....
T Consensus 212 ~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 278 (425)
T 1r5m_A 212 VEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGP-------------ISVLEFNDTNKLLLSASDDGTLRIWHGGN 278 (425)
T ss_dssp CEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSC-------------EEEEEEETTTTEEEEEETTSCEEEECSSS
T ss_pred EEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCc-------------eEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 88876 445555 5668999999999988888766543 44566654 6888887665554442110
Q ss_pred CCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcce-eEEeeeeccccCCCCCCCccCCCccccCccccccc
Q 046828 281 PQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGY-KTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSS 359 (627)
Q Consensus 281 ~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~-~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~ 359 (627)
. . ....+. ++.+. ..+. | .|+ +.+ .
T Consensus 279 ~-----------------~------------~~~~~~--~~~~~i~~~~--~---~~~--------------~~l----~ 304 (425)
T 1r5m_A 279 G-----------------N------------SQNCFY--GHSQSIVSAS--W---VGD--------------DKV----I 304 (425)
T ss_dssp B-----------------S------------CSEEEC--CCSSCEEEEE--E---ETT--------------TEE----E
T ss_pred C-----------------c------------cceEec--CCCccEEEEE--E---CCC--------------CEE----E
Confidence 0 0 000000 00000 0000 0 011 111 2
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC-cee
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS-SHV 438 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~-~~~ 438 (627)
.+..+|.|+|||+.+++.+..+..|..+|.+++|+|+|++|++++.+|+ |+|||+.........-.......+.. ...
T Consensus 305 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (425)
T 1r5m_A 305 SCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ-VNVYDLKKLNSKSRSLYGNRDGILNPLPIP 383 (425)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC-EEEEECHHHHC--------------CEECC
T ss_pred EEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe-EEEEECCCCccceeeeecccccccCcccch
Confidence 3567999999999999999999999999999999999999999999998 89999852100000000000000000 001
Q ss_pred EEEEEeecCCcC-cEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 439 HLYKLHRGMTSA-VIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 439 ~l~~l~rG~t~a-~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
.+..+ +++... .|.+++|+||+++|++++.||+|+||+++
T Consensus 384 ~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 384 LYASY-QSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEE-CCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred hhhhh-cCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 33333 566543 69999999999999999999999999985
No 41
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.89 E-value=9.5e-21 Score=198.40 Aligned_cols=250 Identities=14% Similarity=0.126 Sum_probs=173.8
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
..+.+.|..+.|.. ..+.+++.+.|+.++|||++... +....+..|.+.|..+.+.|.. .
T Consensus 58 ~~h~~~v~~~~~sp------~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-------------~ 118 (345)
T 3fm0_A 58 EGHQRTVRKVAWSP------CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-------------N 118 (345)
T ss_dssp SSCSSCEEEEEECT------TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-------------S
T ss_pred cccCCcEEEEEECC------CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-------------C
Confidence 45677888899963 23678888899999999998754 2344566788999999987643 5
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCce---EEEEe-cCCeEEEEEecC--cE
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNY---VHVLR-FRSTVYMVRCSP--RI 211 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~---V~tL~-f~s~V~sV~~s~--~~ 211 (627)
+|+... .+++|++||+++++. +..+. +...|.++.+++ ++
T Consensus 119 ~l~s~s----------------------------------~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 164 (345)
T 3fm0_A 119 LLATCS----------------------------------RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164 (345)
T ss_dssp EEEEEE----------------------------------TTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred EEEEEE----------------------------------CCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence 665432 136799999988753 45555 456899999987 67
Q ss_pred EEEEe-CCeEEEEeCCCCc--eeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCC
Q 046828 212 VAVGL-AAQIYCFDALTLE--SKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTP 286 (627)
Q Consensus 212 LaV~~-~~~I~i~D~~t~e--~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~ 286 (627)
|+++. ++.|++||+.+.+ ...++.+|..+ +..++++| ++||.++
T Consensus 165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~-------------v~~l~~sp~g~~l~s~s------------------ 213 (345)
T 3fm0_A 165 LASASYDDTVKLYREEEDDWVCCATLEGHEST-------------VWSLAFDPSGQRLASCS------------------ 213 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------------EEEEEECTTSSEEEEEE------------------
T ss_pred EEEEeCCCcEEEEEecCCCEEEEEEecCCCCc-------------eEEEEECCCCCEEEEEe------------------
Confidence 77776 5589999998875 34566666443 33445543 3444444
Q ss_pred CCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCe
Q 046828 287 PSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGM 366 (627)
Q Consensus 287 ~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~ 366 (627)
.||+
T Consensus 214 ----------------------------------------------------------------------------~D~~ 217 (345)
T 3fm0_A 214 ----------------------------------------------------------------------------DDRT 217 (345)
T ss_dssp ----------------------------------------------------------------------------TTSC
T ss_pred ----------------------------------------------------------------------------CCCe
Confidence 4455
Q ss_pred EEEEECCC---------------CeEEEEecc-CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccc
Q 046828 367 VVVKDIVS---------------RSVISQFRA-HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQT 430 (627)
Q Consensus 367 V~IwD~~s---------------~~~l~~~~a-H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~ 430 (627)
|+|||... .+++..+.. |...|.+++|+|++.+||+++.|++ |+||+..+....
T Consensus 218 v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-i~vw~~~~~~~~--------- 287 (345)
T 3fm0_A 218 VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA-IRVFQEDPNSDP--------- 287 (345)
T ss_dssp EEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC-EEEEEECTTSCT---------
T ss_pred EEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe-EEEEEeCCCCCc---------
Confidence 55555311 134556665 8899999999999999999999998 899998632100
Q ss_pred cCCCCceeEEEEEeecCCcCcEEEEEEccCC-CEEEEEeCCCeEEEEEcCCC
Q 046828 431 YDWTSSHVHLYKLHRGMTSAVIQDICFSHYS-QWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 431 ~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg-~~Las~S~dgTvhIw~i~~~ 481 (627)
..........+.++|.. .|.+|+|+|++ .+||+++.||+|+||++...
T Consensus 288 --~~~~~~~~~~~~~~h~~-~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 288 --QQPTFSLTAHLHQAHSQ-DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp --TSCCEEEEEEETTSSSS-CEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred --ceeeEEEEeeecccccC-cEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 00011122333456653 59999999998 59999999999999999754
No 42
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.89 E-value=4.5e-21 Score=201.15 Aligned_cols=251 Identities=11% Similarity=0.094 Sum_probs=181.2
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-----CceEEeeecCCceEEEEEeeCCCCCCCCCCcC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-----NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFR 133 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-----~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~ 133 (627)
..+++.|..+.|+. +.+++.+.++.++|||++... .....+..|.++|.++.+.|...
T Consensus 13 ~~h~~~i~~~~~~~--------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--------- 75 (397)
T 1sq9_A 13 KAHDADIFSVSACN--------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIE--------- 75 (397)
T ss_dssp SCSSSCEEEEEECS--------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEE---------
T ss_pred hhhhcCeEEEEecC--------CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccc---------
Confidence 45788999999952 577778888899999999865 13455557889999999987510
Q ss_pred CCC---CEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCce-----EEEEecC------
Q 046828 134 NSH---PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNY-----VHVLRFR------ 199 (627)
Q Consensus 134 ~~r---pLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~-----V~tL~f~------ 199 (627)
... .+|+... .+++|++||+.+++. +..+..+
T Consensus 76 ~~g~~~~~l~s~~----------------------------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (397)
T 1sq9_A 76 RDAFELCLVATTS----------------------------------FSGDLLFYRITREDETKKVIFEKLDLLDSDMKK 121 (397)
T ss_dssp TTTEEEEEEEEEE----------------------------------TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGG
T ss_pred cCCccccEEEEEc----------------------------------CCCCEEEEEccCCcccccccceeecccccccCC
Confidence 001 2444322 126699999999997 8888755
Q ss_pred CeEEEEEec----C--cE-EEEEe-CCeEEEEeCCC------CceeE-----EEEc-------CCCCCCCCCCCcCcccc
Q 046828 200 STVYMVRCS----P--RI-VAVGL-AAQIYCFDALT------LESKF-----SVLT-------YPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 200 s~V~sV~~s----~--~~-LaV~~-~~~I~i~D~~t------~e~~~-----tl~~-------~p~~~~~~~g~~~~~~~ 253 (627)
..|.+++++ + ++ |+++. ++.|++||+.+ ++.+. ++.+ +..+
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 188 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF------------- 188 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCC-------------
T ss_pred CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCC-------------
Confidence 799999999 5 66 77765 56899999988 55443 3322 1100
Q ss_pred cceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecc
Q 046828 254 YGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQD 333 (627)
Q Consensus 254 ~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~ 333 (627)
+ ..+++.++. .
T Consensus 189 i-------~~~~~~~~~-~------------------------------------------------------------- 199 (397)
T 1sq9_A 189 A-------TSVDISERG-L------------------------------------------------------------- 199 (397)
T ss_dssp C-------CEEEECTTS-E-------------------------------------------------------------
T ss_pred c-------eEEEECCCc-e-------------------------------------------------------------
Confidence 1 112222110 0
Q ss_pred ccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEecc---C---CCCeEEEEECCCCCEEEEEeCC-
Q 046828 334 FIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRA---H---TSPISALCFDRSGTLLVTASIH- 406 (627)
Q Consensus 334 ~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~a---H---~~~Is~laFspdG~lLaTaS~d- 406 (627)
+ ..+..+|.|+|||+.+++.+..+.. | ..+|.+++|+|+|++|++++.+
T Consensus 200 --------------------l----~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~ 255 (397)
T 1sq9_A 200 --------------------I----ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN 255 (397)
T ss_dssp --------------------E----EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET
T ss_pred --------------------E----EEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC
Confidence 0 1245789999999999999999999 9 9999999999999999999999
Q ss_pred --CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeec-------------CCcCcEEEEEEccCCCEEEEEeCCC
Q 046828 407 --GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRG-------------MTSAVIQDICFSHYSQWIAIVSSRG 471 (627)
Q Consensus 407 --Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG-------------~t~a~I~sIaFSpDg~~Las~S~dg 471 (627)
|+ |+|||+. ++. .+..+ .+ +. ..|.+++|+||+++|++++.||
T Consensus 256 ~~g~-i~i~d~~-------~~~------------~~~~~-~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg 313 (397)
T 1sq9_A 256 SFGC-ITLYETE-------FGE------------RIGSL-SVPTHSSQASLGEFAHS-SWVMSLSFNDSGETLCSAGWDG 313 (397)
T ss_dssp TEEE-EEEEETT-------TCC------------EEEEE-CBC--------CCBSBS-SCEEEEEECSSSSEEEEEETTS
T ss_pred CCce-EEEEECC-------CCc------------cccee-ccCcccccccccccccC-CcEEEEEECCCCCEEEEEeCCC
Confidence 87 8999986 221 44444 34 33 4599999999999999999999
Q ss_pred eEEEEEcCCCCCeeecc
Q 046828 472 TCHIFVLTPFGGETVLQ 488 (627)
Q Consensus 472 TvhIw~i~~~gg~~~~~ 488 (627)
+|+||++........+.
T Consensus 314 ~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 314 KLRFWDVKTKERITTLN 330 (397)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred eEEEEEcCCCceeEEEe
Confidence 99999998754444444
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.89 E-value=1.9e-20 Score=191.48 Aligned_cols=185 Identities=15% Similarity=0.187 Sum_probs=144.6
Q ss_pred cEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccc
Q 046828 180 TAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYG 255 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~ 255 (627)
++|++||+.+++.+.++. +...|.++++++ ++|+++. ++.|++||+.+++.+.++.+|..+ +.
T Consensus 45 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-------------v~ 111 (312)
T 4ery_A 45 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-------------VF 111 (312)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC-------------EE
T ss_pred CeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCC-------------EE
Confidence 669999999999999997 455999999997 6777775 568999999999999888877543 22
Q ss_pred eeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecccc
Q 046828 256 PMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFI 335 (627)
Q Consensus 256 ~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~ 335 (627)
. +++.++... +
T Consensus 112 ~-------~~~~~~~~~---------------------------------------l----------------------- 122 (312)
T 4ery_A 112 C-------CNFNPQSNL---------------------------------------I----------------------- 122 (312)
T ss_dssp E-------EEECSSSSE---------------------------------------E-----------------------
T ss_pred E-------EEEcCCCCE---------------------------------------E-----------------------
Confidence 2 333321100 0
Q ss_pred CCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 336 PDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 336 p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
..++.||.|+|||+.+++.+..+..|..+|.+++|+|+|++|++++.||+ |+|||+
T Consensus 123 -----------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~wd~ 178 (312)
T 4ery_A 123 -----------------------VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDT 178 (312)
T ss_dssp -----------------------EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEET
T ss_pred -----------------------EEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCc-EEEEEC
Confidence 02347899999999999999999999999999999999999999999998 899998
Q ss_pred CCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccc
Q 046828 416 MPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 416 ~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h 490 (627)
. ++ ..+..+...+ ...|..++|+||+++|++++.||+|+||++........+..|
T Consensus 179 ~-------~~------------~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 233 (312)
T 4ery_A 179 A-------SG------------QCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233 (312)
T ss_dssp T-------TC------------CEEEEECCSS-CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSS
T ss_pred C-------CC------------ceeeEEeccC-CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEec
Confidence 6 23 1444443333 345999999999999999999999999999765433344444
No 44
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.89 E-value=4e-21 Score=203.49 Aligned_cols=252 Identities=14% Similarity=0.143 Sum_probs=173.7
Q ss_pred CCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
.+.+++.+.++.++|||++. +.....+..|.+.|..+.+.|.. .+|+...
T Consensus 109 ~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~-------------~~l~s~s---------------- 158 (420)
T 3vl1_A 109 MRRFILGTTEGDIKVLDSNF-NLQREIDQAHVSEITKLKFFPSG-------------EALISSS---------------- 158 (420)
T ss_dssp SCEEEEEETTSCEEEECTTS-CEEEEETTSSSSCEEEEEECTTS-------------SEEEEEE----------------
T ss_pred CCEEEEEECCCCEEEEeCCC-cceeeecccccCccEEEEECCCC-------------CEEEEEe----------------
Confidence 36677778888999999986 44556667789999999987643 4555432
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEE
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVL 235 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~ 235 (627)
.+++|++||+++++.+.+++ +...|.++++++ ++|+++. ++.|++||+.+++.+.++.
T Consensus 159 ------------------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 220 (420)
T 3vl1_A 159 ------------------QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 220 (420)
T ss_dssp ------------------TTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ------------------CCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEee
Confidence 13779999999999999998 566999999987 6777765 5679999999999988887
Q ss_pred cCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcc
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAG 315 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~g 315 (627)
.+..+. ..+.. +++.+........ ....+..+
T Consensus 221 ~~~~~~----------~~v~~-------~~~~~~~~~~~~~------~~~~~v~~------------------------- 252 (420)
T 3vl1_A 221 RKENPH----------DGVNS-------IALFVGTDRQLHE------ISTSKKNN------------------------- 252 (420)
T ss_dssp BTTBTT----------CCEEE-------EEEEECCCSSCGG------GCCCCCCT-------------------------
T ss_pred cCCCCC----------CCccE-------EEEecCCcceeee------cccCcccc-------------------------
Confidence 654321 00222 2222211100000 00000000
Q ss_pred eeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEec-cCCCCeEEEEEC
Q 046828 316 LINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFR-AHTSPISALCFD 394 (627)
Q Consensus 316 l~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~-aH~~~Is~laFs 394 (627)
..++++ |.. ...+..+|.|+|||+.+++.+..+. .|..+|.+++|+
T Consensus 253 -------------------------~~~s~~-----~~~---l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 299 (420)
T 3vl1_A 253 -------------------------LEFGTY-----GKY---VIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVD 299 (420)
T ss_dssp -------------------------TCSSCT-----TEE---EEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEEC
T ss_pred -------------------------eEEcCC-----CCE---EEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEe
Confidence 000111 110 0135679999999999998877775 588999999999
Q ss_pred CCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeE
Q 046828 395 RSGT-LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTC 473 (627)
Q Consensus 395 pdG~-lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTv 473 (627)
|+|. +|++++.||+ |+|||+. ++. ..+..+ .++....|.++.| +|+++|++++.||+|
T Consensus 300 ~~~~~~l~~g~~dg~-i~vwd~~-------~~~-----------~~~~~~-~~~~~~~v~~~~~-~~~~~l~s~~~d~~v 358 (420)
T 3vl1_A 300 GNNANYIYAGYENGM-LAQWDLR-------SPE-----------CPVGEF-LINEGTPINNVYF-AAGALFVSSGFDTSI 358 (420)
T ss_dssp SSCTTEEEEEETTSE-EEEEETT-------CTT-----------SCSEEE-EESTTSCEEEEEE-ETTEEEEEETTTEEE
T ss_pred CCCCCEEEEEeCCCe-EEEEEcC-------CCc-----------Cchhhh-hccCCCCceEEEe-CCCCEEEEecCCccE
Confidence 9999 9999999997 8999986 221 123333 3434456888855 688999999999999
Q ss_pred EEEEcCCC
Q 046828 474 HIFVLTPF 481 (627)
Q Consensus 474 hIw~i~~~ 481 (627)
+||++...
T Consensus 359 ~iw~~~~~ 366 (420)
T 3vl1_A 359 KLDIISDP 366 (420)
T ss_dssp EEEEECCT
T ss_pred EEEeccCC
Confidence 99999864
No 45
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.89 E-value=1e-20 Score=201.55 Aligned_cols=271 Identities=10% Similarity=0.065 Sum_probs=186.9
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
..+++++.++.++|||++.......+...|.+.|..+.+.|.. .+|++..
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~-------------~~l~~~~----------------- 153 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDG-------------SFLSVGL----------------- 153 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTS-------------SEEEEEE-----------------
T ss_pred CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCC-------------CEEEEEC-----------------
Confidence 5689999999999999998654333333478899999987642 5665432
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecCcEEEEEe-CCeEEEEeCCC-CceeEEEEcC
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSPRIVAVGL-AAQIYCFDALT-LESKFSVLTY 237 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~~~LaV~~-~~~I~i~D~~t-~e~~~tl~~~ 237 (627)
.++.|++||+.+++.+.++. +...|.++.+++++|+++. ++.|++||+.+ .+....+.+|
T Consensus 154 -----------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 216 (401)
T 4aez_A 154 -----------------GNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH 216 (401)
T ss_dssp -----------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred -----------------CCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence 12569999999999999997 5569999999998888876 55899999994 5556677776
Q ss_pred CCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcc
Q 046828 238 PVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAG 315 (627)
Q Consensus 238 p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~g 315 (627)
..+ +..+++.| ++||.++.+..+.+|..... +.+ ..
T Consensus 217 ~~~-------------v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~----------------------------~~~-~~ 254 (401)
T 4aez_A 217 SSE-------------VCGLAWRSDGLQLASGGNDNVVQIWDARSS----------------------------IPK-FT 254 (401)
T ss_dssp SSC-------------EEEEEECTTSSEEEEEETTSCEEEEETTCS----------------------------SEE-EE
T ss_pred CCC-------------eeEEEEcCCCCEEEEEeCCCeEEEccCCCC----------------------------Ccc-EE
Confidence 543 44566654 68999887766554422100 000 00
Q ss_pred eeecCCcce-eEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEEC
Q 046828 316 LINLGDMGY-KTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFD 394 (627)
Q Consensus 316 l~~lg~~g~-~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFs 394 (627)
+ .++.+. ..+. | .|++ ..+.. ...+..||.|++||+.+++.+..+. |..+|.+++|+
T Consensus 255 ~--~~~~~~v~~~~--~---~p~~-------------~~ll~-~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s 312 (401)
T 4aez_A 255 K--TNHNAAVKAVA--W---CPWQ-------------SNLLA-TGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWS 312 (401)
T ss_dssp E--CCCSSCCCEEE--E---CTTS-------------TTEEE-EECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEC
T ss_pred e--cCCcceEEEEE--E---CCCC-------------CCEEE-EecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEEC
Confidence 0 000000 0000 0 0111 01110 0013479999999999999988886 66789999999
Q ss_pred CCCCEEEEEe--CCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCe
Q 046828 395 RSGTLLVTAS--IHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGT 472 (627)
Q Consensus 395 pdG~lLaTaS--~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgT 472 (627)
|+|.+|++++ .+|+ |+|||+. ++. ...+.++ .++. ..|.+++|+||+++|++++.||+
T Consensus 313 ~~~~~l~~~~g~~dg~-i~v~~~~-------~~~----------~~~~~~~-~~h~-~~v~~~~~s~dg~~l~s~~~dg~ 372 (401)
T 4aez_A 313 PHSKEIMSTHGFPDNN-LSIWSYS-------SSG----------LTKQVDI-PAHD-TRVLYSALSPDGRILSTAASDEN 372 (401)
T ss_dssp SSSSEEEEEECTTTCE-EEEEEEE-------TTE----------EEEEEEE-ECCS-SCCCEEEECTTSSEEEEECTTSE
T ss_pred CCCCeEEEEeecCCCc-EEEEecC-------Ccc----------ceeEEEe-cCCC-CCEEEEEECCCCCEEEEEeCCCc
Confidence 9999999965 8887 8999985 221 1233334 4554 45999999999999999999999
Q ss_pred EEEEEcCCCC
Q 046828 473 CHIFVLTPFG 482 (627)
Q Consensus 473 vhIw~i~~~g 482 (627)
|+||++....
T Consensus 373 i~iw~~~~~~ 382 (401)
T 4aez_A 373 LKFWRVYDGD 382 (401)
T ss_dssp EEEEECCC--
T ss_pred EEEEECCCCc
Confidence 9999997643
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.89 E-value=4.4e-21 Score=203.17 Aligned_cols=235 Identities=10% Similarity=0.083 Sum_probs=166.2
Q ss_pred CCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
.+.++..++++.+++||+...... ..+..+ ..+.+..+.|.. .+|++..
T Consensus 68 g~~l~~~~~d~~v~i~d~~~~~~~-~~~~~~-~~~~~~~~~~~~-------------~~l~~~~---------------- 116 (420)
T 3vl1_A 68 GSHLYKARLDGHDFLFNTIIRDGS-KMLKRA-DYTAVDTAKLQM-------------RRFILGT---------------- 116 (420)
T ss_dssp ETTEEEEEETTEEEEEECCSEETT-TTSCSC-CEEEEEEECSSS-------------CEEEEEE----------------
T ss_pred CCeEEEEEcCCcEEEEEeccccee-eEEecC-CceEEEEEecCC-------------CEEEEEE----------------
Confidence 367888999999999999874422 222222 222333333321 4555432
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEE
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVL 235 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~ 235 (627)
.+++|++||+++++.+..+. +...|.++++++ ++|+++. ++.|++||+.+++.+.++.
T Consensus 117 ------------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 178 (420)
T 3vl1_A 117 ------------------TEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI 178 (420)
T ss_dssp ------------------TTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE
T ss_pred ------------------CCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc
Confidence 12569999999999988875 667999999987 6777776 5689999999999998888
Q ss_pred cCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcc
Q 046828 236 TYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAG 315 (627)
Q Consensus 236 ~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~g 315 (627)
+|..+ +..++ +.++... +
T Consensus 179 ~h~~~-------------v~~~~-------~~~~~~~---------------------------------------l--- 196 (420)
T 3vl1_A 179 GHRAT-------------VTDIA-------IIDRGRN---------------------------------------V--- 196 (420)
T ss_dssp CCSSC-------------EEEEE-------EETTTTE---------------------------------------E---
T ss_pred CCCCc-------------EEEEE-------EcCCCCE---------------------------------------E---
Confidence 77543 22233 3322100 0
Q ss_pred eeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccC---C-------
Q 046828 316 LINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAH---T------- 385 (627)
Q Consensus 316 l~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH---~------- 385 (627)
..++.||.|+|||+.+++.+..+..| .
T Consensus 197 -------------------------------------------~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 233 (420)
T 3vl1_A 197 -------------------------------------------LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIA 233 (420)
T ss_dssp -------------------------------------------EEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEE
T ss_pred -------------------------------------------EEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEE
Confidence 02346889999999999998888753 3
Q ss_pred --------------CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCc
Q 046828 386 --------------SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAV 451 (627)
Q Consensus 386 --------------~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~ 451 (627)
.+|.+++|+|+|++|++++.||+ |+|||+. ++ ..+.++..++. ..
T Consensus 234 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~i~d~~-------~~------------~~~~~~~~~~~-~~ 292 (420)
T 3vl1_A 234 LFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV-ITVHNVF-------SK------------EQTIQLPSKFT-CS 292 (420)
T ss_dssp EEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSC-EEEEETT-------TC------------CEEEEECCTTS-SC
T ss_pred EecCCcceeeecccCcccceEEcCCCCEEEEEcCCCe-EEEEECC-------CC------------ceeEEcccccC-CC
Confidence 44555556899999999999998 8999986 23 25566655554 46
Q ss_pred EEEEEEccCCC-EEEEEeCCCeEEEEEcCCCCC-eeeccc
Q 046828 452 IQDICFSHYSQ-WIAIVSSRGTCHIFVLTPFGG-ETVLQI 489 (627)
Q Consensus 452 I~sIaFSpDg~-~Las~S~dgTvhIw~i~~~gg-~~~~~~ 489 (627)
|.+++|+||++ +|++++.||+|+||++..... ...+..
T Consensus 293 v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 332 (420)
T 3vl1_A 293 CNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI 332 (420)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE
T ss_pred ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc
Confidence 99999999999 999999999999999986543 333444
No 47
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.89 E-value=7.6e-20 Score=186.04 Aligned_cols=237 Identities=13% Similarity=0.129 Sum_probs=173.4
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC-ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN-VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~-~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.+.+.|..+.|.. ..+.+++.+.++.+++||++.... ....+..|.+.|..+.+.|.. .+
T Consensus 95 ~~~~~v~~~~~~~------~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------~~ 155 (337)
T 1gxr_A 95 NRDNYIRSCKLLP------DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-------------KV 155 (337)
T ss_dssp CTTSBEEEEEECT------TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-------------SE
T ss_pred CCCCcEEEEEEcC------CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCC-------------CE
Confidence 4567788888864 235677777788899999998552 234455677888888887642 45
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVG 215 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~ 215 (627)
|++.. .++.|++||+++++.+.+++ +...|.++.+++ ++|+++
T Consensus 156 l~~~~----------------------------------~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 201 (337)
T 1gxr_A 156 CFSCC----------------------------------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG 201 (337)
T ss_dssp EEEEE----------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEe----------------------------------CCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEE
Confidence 55432 12569999999999999998 566999999987 577776
Q ss_pred e-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCC
Q 046828 216 L-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTS 294 (627)
Q Consensus 216 ~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s 294 (627)
. ++.|++||+.+++.+..+. ++.+ .. -+++.++...
T Consensus 202 ~~dg~i~~~d~~~~~~~~~~~-~~~~-------------v~-------~~~~s~~~~~---------------------- 238 (337)
T 1gxr_A 202 GLDNTVRSWDLREGRQLQQHD-FTSQ-------------IF-------SLGYCPTGEW---------------------- 238 (337)
T ss_dssp ETTSEEEEEETTTTEEEEEEE-CSSC-------------EE-------EEEECTTSSE----------------------
T ss_pred ecCCcEEEEECCCCceEeeec-CCCc-------------eE-------EEEECCCCCE----------------------
Confidence 5 6689999999998776653 2221 11 2333322100
Q ss_pred CCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 295 PSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 295 ~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
+ ..+..+|.|++||+.+
T Consensus 239 -----------------l----------------------------------------------~~~~~~~~i~~~~~~~ 255 (337)
T 1gxr_A 239 -----------------L----------------------------------------------AVGMESSNVEVLHVNK 255 (337)
T ss_dssp -----------------E----------------------------------------------EEEETTSCEEEEETTS
T ss_pred -----------------E----------------------------------------------EEEcCCCcEEEEECCC
Confidence 0 0123578999999998
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEE
Q 046828 375 RSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQD 454 (627)
Q Consensus 375 ~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~s 454 (627)
.+. ..+..|..+|.+++|+|+|++|++++.+|+ |+|||+. ++. .+... .+ ...|.+
T Consensus 256 ~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~~~~~-------~~~------------~~~~~--~~-~~~v~~ 311 (337)
T 1gxr_A 256 PDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTP-------YGA------------SIFQS--KE-SSSVLS 311 (337)
T ss_dssp SCE-EEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETT-------TCC------------EEEEE--EC-SSCEEE
T ss_pred CCe-EEEcCCccceeEEEECCCCCEEEEecCCCc-EEEEECC-------CCe------------EEEEe--cC-CCcEEE
Confidence 865 478899999999999999999999999997 8999986 231 33322 22 346999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 455 ICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 455 IaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
++|+||+++|++++.||+|+||++-
T Consensus 312 ~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 312 CDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEECTTSCEEEEEETTSCEEEEEEE
T ss_pred EEECCCCCEEEEecCCCeEEEEEEe
Confidence 9999999999999999999999973
No 48
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.89 E-value=1.8e-20 Score=201.71 Aligned_cols=232 Identities=15% Similarity=0.214 Sum_probs=176.0
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.++.+.|..+.||. +.+++++.++.++|||+.+.. ....+..|.+.|.++.+ .. .+
T Consensus 130 ~~~~~~v~~~~~d~--------~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~--~~-------------~~ 185 (435)
T 1p22_A 130 SETSKGVYCLQYDD--------QKIVSGLRDNTIKIWDKNTLE-CKRILTGHTGSVLCLQY--DE-------------RV 185 (435)
T ss_dssp CSSCCCEEEEECCS--------SEEEEEESSSCEEEEESSSCC-EEEEECCCSSCEEEEEC--CS-------------SE
T ss_pred cCCCCcEEEEEECC--------CEEEEEeCCCeEEEEeCCCCe-EEEEEcCCCCcEEEEEE--CC-------------CE
Confidence 34556788888852 678888889999999998755 45566678899888776 21 35
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecCcEEEEEe-
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSPRIVAVGL- 216 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~~~LaV~~- 216 (627)
|++.. .+++|++||+++++.+.++.. ...|.++.+++..|+++.
T Consensus 186 l~sg~----------------------------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~ 231 (435)
T 1p22_A 186 IITGS----------------------------------SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK 231 (435)
T ss_dssp EEEEE----------------------------------TTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEET
T ss_pred EEEEc----------------------------------CCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeC
Confidence 54322 136799999999999999984 559999999998888876
Q ss_pred CCeEEEEeCCCCcee---EEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCC
Q 046828 217 AAQIYCFDALTLESK---FSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPST 293 (627)
Q Consensus 217 ~~~I~i~D~~t~e~~---~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~ 293 (627)
++.|++||+.+++.. ..+.+|..+ +..+++.+++|+.
T Consensus 232 dg~i~vwd~~~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~s--------------------------- 271 (435)
T 1p22_A 232 DRSIAVWDMASPTDITLRRVLVGHRAA-------------VNVVDFDDKYIVS--------------------------- 271 (435)
T ss_dssp TSCEEEEECSSSSCCEEEEEECCCSSC-------------EEEEEEETTEEEE---------------------------
T ss_pred CCcEEEEeCCCCCCceeeeEecCCCCc-------------EEEEEeCCCEEEE---------------------------
Confidence 558999999988765 333344322 2223322222222
Q ss_pred CCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC
Q 046828 294 SPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV 373 (627)
Q Consensus 294 s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~ 373 (627)
++.||.|+|||+.
T Consensus 272 -------------------------------------------------------------------~~~dg~i~vwd~~ 284 (435)
T 1p22_A 272 -------------------------------------------------------------------ASGDRTIKVWNTS 284 (435)
T ss_dssp -------------------------------------------------------------------EETTSEEEEEETT
T ss_pred -------------------------------------------------------------------EeCCCeEEEEECC
Confidence 3468999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEE
Q 046828 374 SRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQ 453 (627)
Q Consensus 374 s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~ 453 (627)
+++.+..+.+|..+|.+++| ++.+|++++.||+ |+|||+. ++. .+..+ +++. ..|.
T Consensus 285 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~-------~~~------------~~~~~-~~h~-~~v~ 340 (435)
T 1p22_A 285 TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIE-------CGA------------CLRVL-EGHE-ELVR 340 (435)
T ss_dssp TCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSC-EEEEETT-------TCC------------EEEEE-CCCS-SCEE
T ss_pred cCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECC-------CCC------------EEEEE-eCCc-CcEE
Confidence 99999999999999999999 5789999999998 8999986 332 45555 5654 3599
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 454 DICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 454 sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
+++| |+++|++++.||+|+||++...
T Consensus 341 ~~~~--~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 341 CIRF--DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp EEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred EEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence 9999 8999999999999999998653
No 49
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.89 E-value=9e-21 Score=198.90 Aligned_cols=249 Identities=13% Similarity=0.140 Sum_probs=179.2
Q ss_pred CCCCcEEEEEeeccCCCCCCC---CeEEEEeccCcEEEEecCCCCCc----eEEeeec-----CCceEEEEEeeCCCCCC
Q 046828 60 ELKDQVLWSSFDKLELSPSSF---KHVLLLGYSNGFQVLDVEDATNV----SELVSRR-----DDPVTFLQMQPLPAKSD 127 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~---~~vl~~Gy~~G~qVWdv~~~~~~----~ells~~-----dG~V~~v~~lp~p~~~~ 127 (627)
.+.+.|..+.|.... .... +.+++.+.++.++|||++..... ...+..| ++.|..+.+.+.+..
T Consensus 60 ~h~~~v~~~~~~~~~--~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-- 135 (397)
T 1sq9_A 60 VHKSGLHHVDVLQAI--ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-- 135 (397)
T ss_dssp CCTTCEEEEEEEEEE--ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----
T ss_pred cCCCcEEEEEEeccc--ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC--
Confidence 466778888886420 0113 56777788889999999986530 3444455 588999999843210
Q ss_pred CCCCcCCCCCE-EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCC------CceEE-----E
Q 046828 128 GQEGFRNSHPL-LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRS------HNYVH-----V 195 (627)
Q Consensus 128 ~~D~f~~~rpL-lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t------~~~V~-----t 195 (627)
| ..+ |++.. .++.|++||+++ ++.+. +
T Consensus 136 --~-----~~~~l~~~~----------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 174 (397)
T 1sq9_A 136 --L-----LSHRLVATD----------------------------------VKGTTYIWKFHPFADESNSLTLNWSPTLE 174 (397)
T ss_dssp ---------CEEEEEEE----------------------------------TTSCEEEEEEESSSSHHHHTTTCCCCEEE
T ss_pred --C-----CceEEEEEe----------------------------------CCCcEEEEeCCccccccccceeeccCcce
Confidence 1 155 54432 125699999999 77776 7
Q ss_pred Ee--------cCCeEEEEEecCc-EEEEEe-CCeEEEEeCCCCceeEEEEc---C---CCCCCCCCCCcCcccccceeeE
Q 046828 196 LR--------FRSTVYMVRCSPR-IVAVGL-AAQIYCFDALTLESKFSVLT---Y---PVPHFGGQGTSGVNIGYGPMAV 259 (627)
Q Consensus 196 L~--------f~s~V~sV~~s~~-~LaV~~-~~~I~i~D~~t~e~~~tl~~---~---p~~~~~~~g~~~~~~~~~~iAl 259 (627)
+. +...|.++++++. +|+++. ++.|++||+.+++.+..+.. | ..+ +..+++
T Consensus 175 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~-------------i~~i~~ 241 (397)
T 1sq9_A 175 LQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS-------------IRSVKF 241 (397)
T ss_dssp EEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC-------------EEEEEE
T ss_pred eeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCc-------------cceEEE
Confidence 75 3568999999874 777775 56899999999998888877 5 322 222333
Q ss_pred cC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCC
Q 046828 260 GP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPD 337 (627)
Q Consensus 260 ~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~ 337 (627)
+| ++|+.
T Consensus 242 ~~~~~~l~~----------------------------------------------------------------------- 250 (397)
T 1sq9_A 242 SPQGSLLAI----------------------------------------------------------------------- 250 (397)
T ss_dssp CSSTTEEEE-----------------------------------------------------------------------
T ss_pred CCCCCEEEE-----------------------------------------------------------------------
Confidence 22 11211
Q ss_pred CCCCCccCCCccccCcccccccCCCCC---CeEEEEECCCCeEEEEecc-------------CCCCeEEEEECCCCCEEE
Q 046828 338 GSSSPVSSNSSWKAGRNASHSSDTDIA---GMVVVKDIVSRSVISQFRA-------------HTSPISALCFDRSGTLLV 401 (627)
Q Consensus 338 g~~~~~s~~~~~~~g~~~~~~~~~~~d---G~V~IwD~~s~~~l~~~~a-------------H~~~Is~laFspdG~lLa 401 (627)
+..+ |.|+|||+.+++.+..+.. |..+|.+++|+|+|.+|+
T Consensus 251 -----------------------~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 307 (397)
T 1sq9_A 251 -----------------------AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 307 (397)
T ss_dssp -----------------------EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred -----------------------EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEE
Confidence 2245 8999999999999999999 999999999999999999
Q ss_pred EEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee-----cC--------------CcCcEEEEEEccCC-
Q 046828 402 TASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR-----GM--------------TSAVIQDICFSHYS- 461 (627)
Q Consensus 402 TaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r-----G~--------------t~a~I~sIaFSpDg- 461 (627)
+++.||+ |+|||+. ++ ..+..+.. ++ ....|.+++|+||+
T Consensus 308 ~~~~dg~-i~iwd~~-------~~------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~ 367 (397)
T 1sq9_A 308 SAGWDGK-LRFWDVK-------TK------------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 367 (397)
T ss_dssp EEETTSE-EEEEETT-------TT------------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred EEeCCCe-EEEEEcC-------CC------------ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence 9999997 8999986 23 24444431 33 03469999999999
Q ss_pred ---------CEEEEEeCCCeEEEEEcCC
Q 046828 462 ---------QWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 462 ---------~~Las~S~dgTvhIw~i~~ 480 (627)
++|++++.||+|+||++..
T Consensus 368 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 368 RSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp SBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred cccccccccceEEEecCCCcEEEEEcCC
Confidence 7999999999999999864
No 50
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.89 E-value=1.2e-21 Score=206.89 Aligned_cols=261 Identities=11% Similarity=0.059 Sum_probs=172.0
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEec------cCcEEEEecCCCCCce---EEeeecCCceEEEEEeeCCCCCCCCC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGY------SNGFQVLDVEDATNVS---ELVSRRDDPVTFLQMQPLPAKSDGQE 130 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy------~~G~qVWdv~~~~~~~---ells~~dG~V~~v~~lp~p~~~~~~D 130 (627)
.+...|..+.|.. +++.++..+. ++.+++|+........ .....|++.|..+.+.|.-
T Consensus 40 ~H~~~V~~v~fSp------DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~------- 106 (357)
T 4g56_B 40 CMEVQIGAVRYRR------DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK------- 106 (357)
T ss_dssp CCCSEEEEEEECS------SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-------
T ss_pred cccCCEEEEEECC------CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-------
Confidence 3667888999953 2356666664 4568888887644222 2233577889999988642
Q ss_pred CcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-----cCCeEEEE
Q 046828 131 GFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-----FRSTVYMV 205 (627)
Q Consensus 131 ~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-----f~s~V~sV 205 (627)
.+| +.+ .+++|+|||+++++.+...+ +...|.+|
T Consensus 107 ------~~l-~~s----------------------------------~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v 145 (357)
T 4g56_B 107 ------GIL-VAS----------------------------------DSGAVELWEILEKESLLVNKFAKYEHDDIVKTL 145 (357)
T ss_dssp ------EEE-EEE----------------------------------TTSCEEEC--------CCCCEEECCCSSCEEEE
T ss_pred ------CEE-EEE----------------------------------CCCEEEEeeccccceeEEEeeccCCCCCCEEEE
Confidence 233 322 12569999999988654332 45699999
Q ss_pred EecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCC
Q 046828 206 RCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQ 282 (627)
Q Consensus 206 ~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q 282 (627)
+|++ ++|+++. ++.|++||+.+++.+..+.+|..+ +. -+++..+...
T Consensus 146 ~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~-------------v~-------~v~~s~~~~~---------- 195 (357)
T 4g56_B 146 SVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE-------------VN-------CVAACPGKDT---------- 195 (357)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EE-------EEEECTTCSS----------
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC-------------EE-------EEEEccCCCc----------
Confidence 9997 6788775 558999999999998888776543 22 2444432100
Q ss_pred CCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCC
Q 046828 283 SLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTD 362 (627)
Q Consensus 283 ~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~ 362 (627)
+ + ..+.
T Consensus 196 -----------------~-----------------------------------------------------~----~s~~ 201 (357)
T 4g56_B 196 -----------------I-----------------------------------------------------F----LSCG 201 (357)
T ss_dssp -----------------C-----------------------------------------------------E----EEEE
T ss_pred -----------------e-----------------------------------------------------e----eeec
Confidence 0 0 0234
Q ss_pred CCCeEEEEECCCCeEEEEec--cCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 363 IAGMVVVKDIVSRSVISQFR--AHTSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~--aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
.||.|+|||+.+++.+..+. .|...|.+|+|+|+ +.+||+++.||+ |+|||+. ++. .
T Consensus 202 ~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~-i~~wd~~-------~~~------------~ 261 (357)
T 4g56_B 202 EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN-VSLVNIK-------NPD------------S 261 (357)
T ss_dssp TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSC-EEEEESS-------CGG------------G
T ss_pred cCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccc-eeEEECC-------CCc------------E
Confidence 78999999999988766554 56788999999997 578999999998 8999986 221 2
Q ss_pred EEEEeecCCcCcEEEEEEccCC-CEEEEEeCCCeEEEEEcCCCCCeeecccccccccCCCCCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYS-QWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSP 501 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg-~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p 501 (627)
+..+ +++.. .|.+|+|+||+ ++||+++.||+|+||+++.. .......|...+....+.|
T Consensus 262 ~~~~-~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~-~~~~~~~H~~~V~~vafsP 321 (357)
T 4g56_B 262 AQTS-AVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFS-EVFRDLSHRDFVTGVAWSP 321 (357)
T ss_dssp CEEE-CCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSC-EEEEECCCSSCEEEEEECS
T ss_pred eEEE-eccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC-cEeEECCCCCCEEEEEEeC
Confidence 3333 56543 59999999987 68999999999999999753 3334456765554433333
No 51
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3e-21 Score=203.46 Aligned_cols=254 Identities=9% Similarity=0.070 Sum_probs=179.4
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCC---CCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVED---ATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSH 136 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~---~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~r 136 (627)
.+.+.|..+.|.. ..+.+++.+.++.++|||+.. .......+..|.+.|..+.+.|.. .
T Consensus 65 ~~~~~v~~~~~s~------~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------~ 126 (416)
T 2pm9_A 65 QVDSKFNDLDWSH------NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ------------D 126 (416)
T ss_dssp CCSSCEEEEEECS------SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS------------T
T ss_pred ecCCceEEEEECC------CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCC------------C
Confidence 4567888899853 235677777888999999997 233456666788999999987651 1
Q ss_pred CEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc------eEEEE----ecCCeEEEEE
Q 046828 137 PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN------YVHVL----RFRSTVYMVR 206 (627)
Q Consensus 137 pLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~------~V~tL----~f~s~V~sV~ 206 (627)
.+|+... .+++|++||+++++ ....+ .+...|.+++
T Consensus 127 ~~l~s~~----------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 127 NVLASGG----------------------------------NNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp TBEEEEC----------------------------------SSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred CEEEEEc----------------------------------CCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence 4554321 12669999999987 44333 2556999999
Q ss_pred ecC---cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCC
Q 046828 207 CSP---RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQ 282 (627)
Q Consensus 207 ~s~---~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q 282 (627)
+++ ++|+++. ++.|++||+.+++.+..+..+.... +. ...+ ..+++.++...
T Consensus 173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~---~~~v-------~~~~~~~~~~~---------- 228 (416)
T 2pm9_A 173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNS----GI---KQQL-------SVVEWHPKNST---------- 228 (416)
T ss_dssp ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSS----CC---CCCE-------EEEEECSSCTT----------
T ss_pred eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccc----cc---CCce-------EEEEECCCCCC----------
Confidence 986 4777765 5689999999998887776542110 00 0001 22333332100
Q ss_pred CCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCC
Q 046828 283 SLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTD 362 (627)
Q Consensus 283 ~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~ 362 (627)
+ + ..+.
T Consensus 229 -----------------~-----------l----------------------------------------------~~~~ 234 (416)
T 2pm9_A 229 -----------------R-----------V----------------------------------------------ATAT 234 (416)
T ss_dssp -----------------E-----------E----------------------------------------------EEEE
T ss_pred -----------------E-----------E----------------------------------------------EEEE
Confidence 0 0 0112
Q ss_pred CCC---eEEEEECCCC-eEEEEec-cCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 363 IAG---MVVVKDIVSR-SVISQFR-AHTSPISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 363 ~dG---~V~IwD~~s~-~~l~~~~-aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
.+| .|++||+.++ +.+..+. +|..+|.+++|+| +|.+|++++.||+ |+|||+. ++
T Consensus 235 ~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~-------~~----------- 295 (416)
T 2pm9_A 235 GSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPE-------SA----------- 295 (416)
T ss_dssp CCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSS-------SC-----------
T ss_pred CCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCC-------CC-----------
Confidence 344 9999999986 6777888 9999999999999 9999999999998 8999986 23
Q ss_pred eeEEEEEeecCCcCcEEEEEEccCC-CEEEEEeCCCeEEEEEcCCCCCee
Q 046828 437 HVHLYKLHRGMTSAVIQDICFSHYS-QWIAIVSSRGTCHIFVLTPFGGET 485 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFSpDg-~~Las~S~dgTvhIw~i~~~gg~~ 485 (627)
..+..+ .++. ..|.+++|+||+ ++|++++.||+|+||++.......
T Consensus 296 -~~~~~~-~~~~-~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 296 -EQLSQF-PARG-NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp -CEEEEE-ECSS-SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred -ccceee-cCCC-CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 245555 4554 359999999999 899999999999999998765433
No 52
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.88 E-value=9.9e-20 Score=186.14 Aligned_cols=262 Identities=10% Similarity=0.062 Sum_probs=174.6
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCc----eEEeeecCCceEEEEEeeCCCCCCCCCCcCCC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNV----SELVSRRDDPVTFLQMQPLPAKSDGQEGFRNS 135 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~----~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~ 135 (627)
.|.+.|..+.|.. ...+.++..|.|+.++|||+...... ...+..|.+.|..+.+.|..
T Consensus 36 GH~~~V~~v~~sp-----~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg------------ 98 (340)
T 4aow_A 36 GHNGWVTQIATTP-----QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG------------ 98 (340)
T ss_dssp CCSSCEEEEEECT-----TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS------------
T ss_pred CccCCEEEEEEeC-----CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC------------
Confidence 5788899999952 12356778899999999999875421 23455678899999887642
Q ss_pred CCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecC--cEE
Q 046828 136 HPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSP--RIV 212 (627)
Q Consensus 136 rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~--~~L 212 (627)
.+|+... .++.|++|+............. ..+..+.+++ +.|
T Consensus 99 -~~l~s~~----------------------------------~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 143 (340)
T 4aow_A 99 -QFALSGS----------------------------------WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 143 (340)
T ss_dssp -SEEEEEE----------------------------------TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCE
T ss_pred -CEEEEEc----------------------------------ccccceEEeecccceeeeecCCCCceeEEEEeecCccc
Confidence 4555422 1367999999999988887754 4777777765 666
Q ss_pred EEEe-CCeEEEEeCCCCceeEEE-EcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCC
Q 046828 213 AVGL-AAQIYCFDALTLESKFSV-LTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVS 290 (627)
Q Consensus 213 aV~~-~~~I~i~D~~t~e~~~tl-~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s 290 (627)
+++. ++.+++||+......... ..|... . ..+++......
T Consensus 144 ~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~-------------v-------~~~~~~~~~~~------------------ 185 (340)
T 4aow_A 144 VSGSRDKTIKLWNTLGVCKYTVQDESHSEW-------------V-------SCVRFSPNSSN------------------ 185 (340)
T ss_dssp EEEETTSCEEEECTTSCEEEEECSSSCSSC-------------E-------EEEEECSCSSS------------------
T ss_pred eeecCCCeEEEEEeCCCceEEEEeccccCc-------------c-------cceEEccCCCC------------------
Confidence 6665 568999998765432211 111111 1 12333321100
Q ss_pred CCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEE
Q 046828 291 PSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVK 370 (627)
Q Consensus 291 ~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~Iw 370 (627)
. + ...++.|+.|++|
T Consensus 186 --------~------------------------------------------------------~---~~s~~~d~~i~i~ 200 (340)
T 4aow_A 186 --------P------------------------------------------------------I---IVSCGWDKLVKVW 200 (340)
T ss_dssp --------C------------------------------------------------------E---EEEEETTSCEEEE
T ss_pred --------c------------------------------------------------------E---EEEEcCCCEEEEE
Confidence 0 0 0123578999999
Q ss_pred ECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCC----C----------CCCCCccccCCCCc
Q 046828 371 DIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSK----G----------RSGSASQTYDWTSS 436 (627)
Q Consensus 371 D~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~----~----------~~g~~~~~~~~~~~ 436 (627)
|+.+++.+..+.+|..+|.+|+|+|+|++|++++.||+ |+|||+...... . +.+...... .. .
T Consensus 201 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d-~ 277 (340)
T 4aow_A 201 NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAA-TG-P 277 (340)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEE-ET-T
T ss_pred ECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEeccCceeeeecCCceEEeeecCCCCceeecc-CC-C
Confidence 99999999999999999999999999999999999998 899998621100 0 000000000 00 0
Q ss_pred eeEEEEEe-----------------ecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 437 HVHLYKLH-----------------RGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 437 ~~~l~~l~-----------------rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
..+++.++ .++ ...|.+|+|+||+++|++++.||+|+||++..
T Consensus 278 ~i~iwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 278 SIKIWDLEGKIIVDELKQEVISTSSKAE-PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp EEEEEETTTTEEEEEECCC-------CC-CCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred EEEEEECCCCeEEEeccccceeeeccCC-CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 11222221 123 23599999999999999999999999999874
No 53
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.4e-20 Score=186.15 Aligned_cols=275 Identities=13% Similarity=0.079 Sum_probs=189.4
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
..+.+.|..+.| . + .+.+++.+.++.++|||++.. .....+..|++.|..+.+.|.. .+
T Consensus 15 ~~h~~~v~~~~~-~---~---~~~l~s~~~dg~v~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~-------------~~ 73 (313)
T 3odt_A 15 KGHDQDVRDVVA-V---D---DSKVASVSRDGTVRLWSKDDQ-WLGTVVYTGQGFLNSVCYDSEK-------------EL 73 (313)
T ss_dssp CCCSSCEEEEEE-E---E---TTEEEEEETTSEEEEEEESSS-EEEEEEEECSSCEEEEEEETTT-------------TE
T ss_pred hCCCCCcEEEEe-c---C---CCEEEEEEcCCcEEEEECCCC-EEEEEeecCCccEEEEEECCCC-------------CE
Confidence 356788888888 2 1 256777888888999999764 4566777789999999998753 45
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCC---ceEEEEe-cCCeEEEEEecCcEEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSH---NYVHVLR-FRSTVYMVRCSPRIVAV 214 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~---~~V~tL~-f~s~V~sV~~s~~~LaV 214 (627)
|++.. .++.|++|++... +.+.++. +...|.++.++.+.|++
T Consensus 74 l~~~~----------------------------------~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 119 (313)
T 3odt_A 74 LLFGG----------------------------------KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVIS 119 (313)
T ss_dssp EEEEE----------------------------------TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEE
T ss_pred EEEec----------------------------------CCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEE
Confidence 55432 1256999998754 5677776 55699999999888888
Q ss_pred Ee-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeE---cCceEEEcCCCCCcCCCCccCCCCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAV---GPRWLAYASNNPLLPNTGRLSPQSLTPPSVS 290 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl---~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s 290 (627)
+. ++.|++|| +.+.+..+..|..+ ...+++ .+++|+.++.+..+.+|...
T Consensus 120 ~~~d~~i~~~d--~~~~~~~~~~~~~~-------------v~~~~~~~~~~~~l~~~~~d~~i~i~d~~----------- 173 (313)
T 3odt_A 120 GSWDKTAKVWK--EGSLVYNLQAHNAS-------------VWDAKVVSFSENKFLTASADKTIKLWQND----------- 173 (313)
T ss_dssp EETTSEEEEEE--TTEEEEEEECCSSC-------------EEEEEEEETTTTEEEEEETTSCEEEEETT-----------
T ss_pred EeCCCCEEEEc--CCcEEEecccCCCc-------------eeEEEEccCCCCEEEEEECCCCEEEEecC-----------
Confidence 76 55899999 66777777776543 223333 45788887766554433200
Q ss_pred CCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEE
Q 046828 291 PSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVK 370 (627)
Q Consensus 291 ~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~Iw 370 (627)
+....+..........+. | .|+ +.+ ..+..+|.|++|
T Consensus 174 --------------------~~~~~~~~~~~~~i~~~~--~---~~~--------------~~~----~~~~~dg~i~i~ 210 (313)
T 3odt_A 174 --------------------KVIKTFSGIHNDVVRHLA--V---VDD--------------GHF----ISCSNDGLIKLV 210 (313)
T ss_dssp --------------------EEEEEECSSCSSCEEEEE--E---EET--------------TEE----EEEETTSEEEEE
T ss_pred --------------------ceEEEEeccCcccEEEEE--E---cCC--------------CeE----EEccCCCeEEEE
Confidence 000000000000000000 0 011 112 245689999999
Q ss_pred ECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC
Q 046828 371 DIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA 450 (627)
Q Consensus 371 D~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a 450 (627)
|+.+++.+..+..|..+|.+++|+|+| .|++++.||+ |+|||+. ++. .+..+ .++. .
T Consensus 211 d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~-v~iwd~~-------~~~------------~~~~~-~~~~-~ 267 (313)
T 3odt_A 211 DMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRT-VRIWSKE-------NGS------------LKQVI-TLPA-I 267 (313)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSE-EEEECTT-------TCC------------EEEEE-ECSS-S
T ss_pred ECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCE-EEEEECC-------CCc------------eeEEE-eccC-c
Confidence 999999999999999999999999999 5889999997 8999986 231 44444 4443 3
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 451 VIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 451 ~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.|.+++|+||++ +++++.||+|+||+++..
T Consensus 268 ~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 268 SIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp CEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred eEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 599999999999 557999999999999753
No 54
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.88 E-value=3.4e-20 Score=193.49 Aligned_cols=240 Identities=11% Similarity=0.175 Sum_probs=163.0
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.+.+.|..+.|.. ....++..+.|+.++|||+.+... ...+..|.+.|..+.+.|.. .+|
T Consensus 74 ~h~~~V~~~~~~~------~~~~l~s~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~v~~sp~~-------------~~l 133 (343)
T 2xzm_R 74 GHNHFVSDLALSQ------ENCFAISSSWDKTLRLWDLRTGTT-YKRFVGHQSEVYSVAFSPDN-------------RQI 133 (343)
T ss_dssp CCSSCEEEEEECS------STTEEEEEETTSEEEEEETTSSCE-EEEEECCCSCEEEEEECSST-------------TEE
T ss_pred cCCCceEEEEECC------CCCEEEEEcCCCcEEEEECCCCcE-EEEEcCCCCcEEEEEECCCC-------------CEE
Confidence 4566777788853 236778888899999999998653 44556788999999987753 455
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEE---ecCCeEEEEEecC-------
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVL---RFRSTVYMVRCSP------- 209 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL---~f~s~V~sV~~s~------- 209 (627)
+..+ .+++|++||++........ .+...|.++++++
T Consensus 134 ~s~~----------------------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 179 (343)
T 2xzm_R 134 LSAG----------------------------------AEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANK 179 (343)
T ss_dssp EEEE----------------------------------TTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSC
T ss_pred EEEc----------------------------------CCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccc
Confidence 5432 1367999999844333222 2445899999986
Q ss_pred -----cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCC
Q 046828 210 -----RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQS 283 (627)
Q Consensus 210 -----~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~ 283 (627)
.+|+++. ++.|++|| .+.+..+++..|..+ +..+ ++.++...
T Consensus 180 ~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~-------------v~~~-------~~s~~g~~----------- 227 (343)
T 2xzm_R 180 VQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESN-------------VNHL-------SISPNGKY----------- 227 (343)
T ss_dssp CCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSC-------------EEEE-------EECTTSSE-----------
T ss_pred cCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCcccc-------------ceEE-------EECCCCCE-----------
Confidence 3566665 66899999 456667777776543 2233 33332100
Q ss_pred CCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCC
Q 046828 284 LTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDI 363 (627)
Q Consensus 284 ~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~ 363 (627)
+ +.++.
T Consensus 228 ----------------------------l----------------------------------------------~sgs~ 233 (343)
T 2xzm_R 228 ----------------------------I----------------------------------------------ATGGK 233 (343)
T ss_dssp ----------------------------E----------------------------------------------EEEET
T ss_pred ----------------------------E----------------------------------------------EEEcC
Confidence 0 02347
Q ss_pred CCeEEEEECCCC-eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 364 AGMVVVKDIVSR-SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 364 dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
||.|+|||+.+. .....+ .|..+|.+++|+|++.+|++++ |+. |+|||+... .. ..+..
T Consensus 234 dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~~-d~~-v~iw~~~~~-------~~----------~~~~~ 293 (343)
T 2xzm_R 234 DKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVGT-DQG-VKIFNLMTQ-------SK----------APVCT 293 (343)
T ss_dssp TCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEEE-SSC-EEEEESSSC-------CS----------CSEEE
T ss_pred CCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEEC-CCC-EEEEEeCCC-------CC----------CceEE
Confidence 899999999543 334444 3556799999999999998766 455 799998621 10 01112
Q ss_pred Ee----------ecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 443 LH----------RGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 443 l~----------rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
+. +|+. ..|.+++|+||+++|++++.||+|+||+++.
T Consensus 294 ~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 294 IEAEPITKAEGQKGKN-PQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CCCCSGGGBTTBCCSC-CCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred eecCcchhhhhhcCCC-CceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 21 2443 3599999999999999999999999999863
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.88 E-value=8.3e-20 Score=196.86 Aligned_cols=253 Identities=17% Similarity=0.218 Sum_probs=173.8
Q ss_pred CCCCcE-EEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 60 ELKDQV-LWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 60 ~~~d~V-~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.+.+.| .++.|+. +.+++.+.++.++|||+.+.. ....+..|.++|..+.+.|. .+
T Consensus 119 ~h~~~v~~~~~~~~--------~~l~sgs~dg~i~vwd~~~~~-~~~~~~~h~~~V~~l~~~~~--------------~~ 175 (464)
T 3v7d_B 119 GHMTSVITCLQFED--------NYVITGADDKMIRVYDSINKK-FLLQLSGHDGGVWALKYAHG--------------GI 175 (464)
T ss_dssp CCSSSCEEEEEEET--------TEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECST--------------TE
T ss_pred CCCCCcEEEEEECC--------CEEEEEcCCCcEEEEECCCCc-EEEEEeCCCcCEEEEEEcCC--------------CE
Confidence 345554 4667752 577888889999999998855 44555678999999998643 24
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC----cEEE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP----RIVA 213 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~----~~La 213 (627)
|+... .+++|++||+++++.++++. +...|.++++++ ++|+
T Consensus 176 l~s~s----------------------------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~ 221 (464)
T 3v7d_B 176 LVSGS----------------------------------TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV 221 (464)
T ss_dssp EEEEE----------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEE
T ss_pred EEEEe----------------------------------CCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEE
Confidence 44322 13679999999999999998 567999999973 5677
Q ss_pred EEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC----ceEEEcCCCCCcCCCCccCCCCCCCCC
Q 046828 214 VGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP----RWLAYASNNPLLPNTGRLSPQSLTPPS 288 (627)
Q Consensus 214 V~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~----r~LAy~~~~~~v~~~gr~~~q~~t~~~ 288 (627)
++. ++.|++||+.+.+.......... ...+...+ ..+..-.
T Consensus 222 s~s~d~~i~vwd~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~-------------------- 267 (464)
T 3v7d_B 222 TGSRDNTLHVWKLPKESSVPDHGEEHD--------------YPLVFHTPEENPYFVGVLR-------------------- 267 (464)
T ss_dssp EEETTSCEEEEECCCCCCC------CC--------------SSEEESCGGGCTTEEEEEC--------------------
T ss_pred EEcCCCcEEEeeCCCCcccccccccCC--------------cceEeeccCCCeEEEEEcc--------------------
Confidence 665 56899999998775543321110 00000000 0000000
Q ss_pred CCCCCCCCCCcccchhhhhhhhhhhcceeecCCcce-eEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeE
Q 046828 289 VSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGY-KTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMV 367 (627)
Q Consensus 289 ~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~-~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V 367 (627)
++.+. ..++ +++ ..+ ..+..||.|
T Consensus 268 -------------------------------~~~~~v~~~~-------~~~-------------~~l----~~~~~d~~i 292 (464)
T 3v7d_B 268 -------------------------------GHMASVRTVS-------GHG-------------NIV----VSGSYDNTL 292 (464)
T ss_dssp -------------------------------CCSSCEEEEE-------EET-------------TEE----EEEETTSCE
T ss_pred -------------------------------CccceEEEEc-------CCC-------------CEE----EEEeCCCeE
Confidence 00000 0010 000 001 235689999
Q ss_pred EEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecC
Q 046828 368 VVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGM 447 (627)
Q Consensus 368 ~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~ 447 (627)
++||+.+++.+..+.+|..+|.+++|+|+|.+|++++.||+ |+|||+. ++ ..+..+ +++
T Consensus 293 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~vwd~~-------~~------------~~~~~~-~~h 351 (464)
T 3v7d_B 293 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLE-------NG------------ELMYTL-QGH 351 (464)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETT-------TT------------EEEEEE-CCC
T ss_pred EEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECC-------CC------------cEEEEE-eCC
Confidence 99999999999999999999999999999999999999998 8999986 33 245555 566
Q ss_pred CcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 448 TSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 448 t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
. ..|.+++|+ +++|++++.||+|++|++....
T Consensus 352 ~-~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~ 383 (464)
T 3v7d_B 352 T-ALVGLLRLS--DKFLVSAAADGSIRGWDANDYS 383 (464)
T ss_dssp S-SCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred C-CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc
Confidence 4 459999997 5899999999999999998643
No 56
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.88 E-value=1.6e-21 Score=207.10 Aligned_cols=267 Identities=13% Similarity=0.130 Sum_probs=171.4
Q ss_pred EEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCC
Q 046828 93 QVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQP 172 (627)
Q Consensus 93 qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~ 172 (627)
.+|+..+.. ....+..|.++|.++.+.|.. .+|+...
T Consensus 49 ~~~~~~~~~-~~~~l~gH~~~V~~~~~sp~~-------------~~l~s~s----------------------------- 85 (380)
T 3iz6_a 49 VSFNPTDLV-CCRTLQGHSGKVYSLDWTPEK-------------NWIVSAS----------------------------- 85 (380)
T ss_dssp CCCCCCCCE-EEEEECCCSSCEEEEEECTTS-------------SCEEEEE-----------------------------
T ss_pred cccccceeE-EeecccccccEEEEEEEcCCC-------------CEEEEEe-----------------------------
Confidence 345554432 345667799999999998743 4555322
Q ss_pred CCCCcCCcEEEEEECCCCceEEEEecC-CeEEEEEecC--cEEEEEe-CCeEEEEeCCCCce-------eEEEEcCCCCC
Q 046828 173 GNVAMSPTAVRFYSLRSHNYVHVLRFR-STVYMVRCSP--RIVAVGL-AAQIYCFDALTLES-------KFSVLTYPVPH 241 (627)
Q Consensus 173 ~~~~~~~~tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~-------~~tl~~~p~~~ 241 (627)
.+++|+|||+.+++.+++++.+ ..|.+++|++ ++|+++. ++.|+|||+.+... ...+.+|...
T Consensus 86 -----~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~- 159 (380)
T 3iz6_a 86 -----QDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY- 159 (380)
T ss_dssp -----TTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSC-
T ss_pred -----CCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcc-
Confidence 2478999999999999999855 4899999987 6777775 56899999976431 2233344321
Q ss_pred CCCCCCcCcccccceeeEcC---ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceee
Q 046828 242 FGGQGTSGVNIGYGPMAVGP---RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLIN 318 (627)
Q Consensus 242 ~~~~g~~~~~~~~~~iAl~~---r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~ 318 (627)
...+++.| ..|+.++.+..+.+|..... ..+..+.. + ..
T Consensus 160 ------------v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~-----------------~~~~~~~~----~-----~~ 201 (380)
T 3iz6_a 160 ------------ASSCQYVPDQETRLITGSGDQTCVLWDVTTG-----------------QRISIFGS----E-----FP 201 (380)
T ss_dssp ------------CCCCBCCSSSSSCEEEECTTSCEEEECTTTC-----------------CEEEEECC----C-----SS
T ss_pred ------------eEEEEEecCCCCEEEEECCCCcEEEEEcCCC-----------------cEEEEeec----c-----cC
Confidence 12233333 46888887777665532100 00000000 0 00
Q ss_pred cCCcce-eEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC-CCeEEEEeccCCCCeEEEEECCC
Q 046828 319 LGDMGY-KTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV-SRSVISQFRAHTSPISALCFDRS 396 (627)
Q Consensus 319 lg~~g~-~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~-s~~~l~~~~aH~~~Is~laFspd 396 (627)
.++... ..+. +. | . .+. ...+++.||.|+|||+. ..+.+..+.+|..+|.+|+|+|+
T Consensus 202 ~~h~~~v~~~~--~~---~--------~-----~~~---~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~ 260 (380)
T 3iz6_a 202 SGHTADVLSLS--IN---S--------L-----NAN---MFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD 260 (380)
T ss_dssp SSCCSCEEEEE--EC---S--------S-----SCC---EEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTT
T ss_pred CCCccCeEEEE--ee---c--------C-----CCC---EEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecC
Confidence 011000 0000 00 0 0 011 11246789999999997 45778899999999999999999
Q ss_pred CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCC-----cCcEEEEEEccCCCEEEEEeCCC
Q 046828 397 GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMT-----SAVIQDICFSHYSQWIAIVSSRG 471 (627)
Q Consensus 397 G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t-----~a~I~sIaFSpDg~~Las~S~dg 471 (627)
|.+|+|++.||+ |+|||+. ++ ..+..+..... ...|.+++|+|||++|++++.||
T Consensus 261 ~~~l~s~s~D~~-i~lwd~~-------~~------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg 320 (380)
T 3iz6_a 261 GQRFGTGSDDGT-CRLFDMR-------TG------------HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG 320 (380)
T ss_dssp SSEEEEECSSSC-EEEEETT-------TT------------EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS
T ss_pred CCeEEEEcCCCe-EEEEECC-------CC------------cEEEEecccccccccccCceEEEEECCCCCEEEEEECCC
Confidence 999999999998 8999986 23 13333322111 12389999999999999999999
Q ss_pred eEEEEEcCCCCCeeec
Q 046828 472 TCHIFVLTPFGGETVL 487 (627)
Q Consensus 472 TvhIw~i~~~gg~~~~ 487 (627)
+|+||++........+
T Consensus 321 ~i~vwd~~~~~~~~~~ 336 (380)
T 3iz6_a 321 DCYVWDTLLAEMVLNL 336 (380)
T ss_dssp CEEEEETTTCCEEEEE
T ss_pred CEEEEECCCCceEEEE
Confidence 9999998754433333
No 57
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.88 E-value=7.3e-22 Score=208.18 Aligned_cols=260 Identities=13% Similarity=0.086 Sum_probs=173.8
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC------CceEE--eeecCCceEEEEEeeCCCCCCCCCCc
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT------NVSEL--VSRRDDPVTFLQMQPLPAKSDGQEGF 132 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~------~~~el--ls~~dG~V~~v~~lp~p~~~~~~D~f 132 (627)
+.+.|..+.|... ..+.+++.+.++.++|||+.... ....+ +..|.+.|..+.+.|..
T Consensus 112 h~~~v~~~~~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------- 177 (416)
T 2pm9_A 112 HSSSVKTVKFNAK-----QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL--------- 177 (416)
T ss_dssp SSSCCCEEEECSS-----STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC---------
T ss_pred CccceEEEEEcCC-----CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC---------
Confidence 5566777777431 23667778888899999999865 22222 34577888888887651
Q ss_pred CCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-------CCeEEEE
Q 046828 133 RNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-------RSTVYMV 205 (627)
Q Consensus 133 ~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-------~s~V~sV 205 (627)
..+|+... .+++|++||+++++.+.++.. ...|.++
T Consensus 178 ---~~~l~~~~----------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 220 (416)
T 2pm9_A 178 ---AHVFASAG----------------------------------SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVV 220 (416)
T ss_dssp ---TTEEEEES----------------------------------SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEE
T ss_pred ---CcEEEEEc----------------------------------CCCCEEEEECCCCCcceEEeccccccccCCceEEE
Confidence 14554321 126699999999999999986 4689999
Q ss_pred EecC---cEEEEEeCC----eEEEEeCCCCc-eeEEEE-cCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCC
Q 046828 206 RCSP---RIVAVGLAA----QIYCFDALTLE-SKFSVL-TYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNT 276 (627)
Q Consensus 206 ~~s~---~~LaV~~~~----~I~i~D~~t~e-~~~tl~-~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~ 276 (627)
++++ .+|+++..+ .|++||+.+++ .+..+. +|..+ + .-+++.+.+.
T Consensus 221 ~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~-------------v-------~~~~~s~~~~----- 275 (416)
T 2pm9_A 221 EWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG-------------I-------LSLDWCHQDE----- 275 (416)
T ss_dssp EECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC-------------E-------EEEEECSSCS-----
T ss_pred EECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc-------------e-------eEEEeCCCCC-----
Confidence 9997 477777655 89999999873 444443 33221 1 1233332110
Q ss_pred CccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccc
Q 046828 277 GRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNAS 356 (627)
Q Consensus 277 gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~ 356 (627)
.+ +
T Consensus 276 ----------------------~~-----------------------------------------------------l-- 278 (416)
T 2pm9_A 276 ----------------------HL-----------------------------------------------------L-- 278 (416)
T ss_dssp ----------------------SC-----------------------------------------------------E--
T ss_pred ----------------------Ce-----------------------------------------------------E--
Confidence 00 0
Q ss_pred cccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCC-ccccCCC
Q 046828 357 HSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSA-SQTYDWT 434 (627)
Q Consensus 357 ~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~-~~~~~~~ 434 (627)
..+..||.|+|||+.+++.+..+..|..+|.+++|+|+| .+|++++.||+ |+|||+....... .-.. ....+
T Consensus 279 --~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~-i~iw~~~~~~~~~-~~~~~~~~~~-- 352 (416)
T 2pm9_A 279 --LSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK-IEVQTLQNLTNTL-DEQETETKQQ-- 352 (416)
T ss_dssp --EEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE-EEEEESCCCCCSS-CC----------
T ss_pred --EEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc-EEEEEccCCCCCc-cccccccccc--
Confidence 123468999999999999999999999999999999999 89999999997 8999986221100 0000 00000
Q ss_pred CceeEEE-----------------EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 435 SSHVHLY-----------------KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 435 ~~~~~l~-----------------~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.....++ +..+.+ ...|.+++|||||++||+++.||+|+||++..
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 353 ESETDFWNNVSREESKEKPSVFHLQAPTWY-GEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp --------------CCSCCCSSCCCCCSTT-CCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred CCcccccccccccccccccccccccCCccc-cCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 0000000 000112 23477999999999999999999999999875
No 58
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3e-20 Score=194.90 Aligned_cols=265 Identities=12% Similarity=0.137 Sum_probs=174.8
Q ss_pred CCcEEEEEeeccCCCCCCCC-eEEEEeccCcEEEEec----CCCCC-----ceEEeee----------cCCceEEEEEee
Q 046828 62 KDQVLWSSFDKLELSPSSFK-HVLLLGYSNGFQVLDV----EDATN-----VSELVSR----------RDDPVTFLQMQP 121 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~-~vl~~Gy~~G~qVWdv----~~~~~-----~~ells~----------~dG~V~~v~~lp 121 (627)
.+.|..+.|.. ..+ .+++.+.++.++|||+ ..... ....+.. |.+.|.++.+.|
T Consensus 45 ~~~v~~~~~s~------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 118 (425)
T 1r5m_A 45 LDNIVSSTWNP------LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH 118 (425)
T ss_dssp CSCCSEEEECS------SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT
T ss_pred cCceEEEEECC------CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC
Confidence 35666777753 224 6777777888999999 76541 1222333 566888888876
Q ss_pred CCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCC
Q 046828 122 LPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRS 200 (627)
Q Consensus 122 ~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s 200 (627)
.. .+|++.. .+++|++|| .+++.+..+. +..
T Consensus 119 ~~-------------~~l~~~~----------------------------------~dg~i~i~~-~~~~~~~~~~~~~~ 150 (425)
T 1r5m_A 119 DG-------------NSIVTGV----------------------------------ENGELRLWN-KTGALLNVLNFHRA 150 (425)
T ss_dssp TS-------------SEEEEEE----------------------------------TTSCEEEEE-TTSCEEEEECCCCS
T ss_pred CC-------------CEEEEEe----------------------------------CCCeEEEEe-CCCCeeeeccCCCc
Confidence 42 5665432 125699999 7888899888 556
Q ss_pred eEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCC
Q 046828 201 TVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTG 277 (627)
Q Consensus 201 ~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~g 277 (627)
.|.++.+++ +.|+++. ++.|++||+.+++.+..+..+..+. ..+. ..........
T Consensus 151 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------------~~~~----~~~~~~~~~~----- 208 (425)
T 1r5m_A 151 PIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG-------------SSIN----AENHSGDGSL----- 208 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------------------------CCC-----
T ss_pred cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc-------------ccee----eccccCCcce-----
Confidence 999999987 5666665 5689999999999887775543210 0000 0000000000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCccccc
Q 046828 278 RLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASH 357 (627)
Q Consensus 278 r~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~ 357 (627)
+ ..+. ++ |+ +.+
T Consensus 209 -----------------------~------------~~~~---------~~-------~~--------------~~~--- 220 (425)
T 1r5m_A 209 -----------------------G------------VDVE---------WV-------DD--------------DKF--- 220 (425)
T ss_dssp -----------------------B------------SCCE---------EE-------ET--------------TEE---
T ss_pred -----------------------e------------eEEE---------Ec-------CC--------------CEE---
Confidence 0 0000 00 00 011
Q ss_pred ccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 358 SSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 358 ~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
..+..+|.|++||+.+++.+..+..|..+|.+++|+|+|++|++++.+|+ |+|||+. .+.
T Consensus 221 -~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~i~d~~-------~~~----------- 280 (425)
T 1r5m_A 221 -VIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGT-LRIWHGG-------NGN----------- 280 (425)
T ss_dssp -EEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEECSS-------SBS-----------
T ss_pred -EEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCE-EEEEECC-------CCc-----------
Confidence 12457899999999999999999999999999999999999999999998 7999986 221
Q ss_pred eEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccccc
Q 046828 438 VHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHV 494 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v 494 (627)
.+..+ .++. ..|.+++|+||+ +|++++.||+|+||++........+..|...+
T Consensus 281 -~~~~~-~~~~-~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i 333 (425)
T 1r5m_A 281 -SQNCF-YGHS-QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPI 333 (425)
T ss_dssp -CSEEE-CCCS-SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCE
T ss_pred -cceEe-cCCC-ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccE
Confidence 22333 3443 459999999999 99999999999999998755444555554433
No 59
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.88 E-value=4.3e-20 Score=211.34 Aligned_cols=248 Identities=14% Similarity=0.176 Sum_probs=177.7
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC----ceEEeeecCCceEEEEEeeCCCCCCCCCCcCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN----VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRN 134 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~----~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~ 134 (627)
..|.+.|..+.|.. ...+.+++.+.|+.++|||+...+. ....+..|.+.|..+.+.|..
T Consensus 379 ~~H~~~V~~v~~~~-----~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g----------- 442 (694)
T 3dm0_A 379 RAHTDMVTAIATPI-----DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG----------- 442 (694)
T ss_dssp ECCSSCEEEEECCT-----TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-----------
T ss_pred ccCCceeEEEEecC-----CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-----------
Confidence 46888999998853 1235677788899999999986432 234567789999999887642
Q ss_pred CCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cE
Q 046828 135 SHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RI 211 (627)
Q Consensus 135 ~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~ 211 (627)
.+|+..+ .+++|+|||+++++.++++. +...|.+|++++ +.
T Consensus 443 --~~l~sgs----------------------------------~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 486 (694)
T 3dm0_A 443 --QFALSGS----------------------------------WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQ 486 (694)
T ss_dssp --SEEEEEE----------------------------------TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSC
T ss_pred --CEEEEEe----------------------------------CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCE
Confidence 4554322 13789999999999999987 556999999987 56
Q ss_pred EEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCC
Q 046828 212 VAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVS 290 (627)
Q Consensus 212 LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s 290 (627)
|+++. ++.|+|||.... +...+...... . ...+ ..+++.++...
T Consensus 487 l~s~s~D~~i~iwd~~~~-~~~~~~~~~~~------h------~~~v----~~~~~~~~~~~------------------ 531 (694)
T 3dm0_A 487 IVSASRDRTIKLWNTLGE-CKYTISEGGEG------H------RDWV----SCVRFSPNTLQ------------------ 531 (694)
T ss_dssp EEEEETTSCEEEECTTSC-EEEEECSSTTS------C------SSCE----EEEEECSCSSS------------------
T ss_pred EEEEeCCCEEEEEECCCC-cceeeccCCCC------C------CCcE----EEEEEeCCCCc------------------
Confidence 76665 568999998643 33333211100 0 0001 12333321100
Q ss_pred CCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEE
Q 046828 291 PSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVK 370 (627)
Q Consensus 291 ~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~Iw 370 (627)
. .+ .+++.||.|+||
T Consensus 532 --------~-----------------------------------------------------~l----~s~s~d~~v~vw 546 (694)
T 3dm0_A 532 --------P-----------------------------------------------------TI----VSASWDKTVKVW 546 (694)
T ss_dssp --------C-----------------------------------------------------EE----EEEETTSCEEEE
T ss_pred --------c-----------------------------------------------------eE----EEEeCCCeEEEE
Confidence 0 00 134578999999
Q ss_pred ECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC
Q 046828 371 DIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA 450 (627)
Q Consensus 371 D~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a 450 (627)
|+.+.+.+..+.+|..+|.+|+|+|+|++|++++.||+ |+|||+. ++ ..++.+. . ..
T Consensus 547 d~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~-------~~------------~~~~~~~-~--~~ 603 (694)
T 3dm0_A 547 NLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLA-------EG------------KKLYSLE-A--NS 603 (694)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETT-------TT------------EEEECCB-C--SS
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECC-------CC------------ceEEEec-C--CC
Confidence 99999999999999999999999999999999999998 7999986 33 2555543 2 24
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 451 VIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 451 ~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
.|.+++|+||+.+|++++ ++.|+||++....
T Consensus 604 ~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 604 VIHALCFSPNRYWLCAAT-EHGIKIWDLESKS 634 (694)
T ss_dssp CEEEEEECSSSSEEEEEE-TTEEEEEETTTTE
T ss_pred cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCC
Confidence 599999999999998876 4569999997643
No 60
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.87 E-value=1.5e-20 Score=193.17 Aligned_cols=269 Identities=14% Similarity=0.178 Sum_probs=176.6
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.+.+.|..+.|.... .....+++.+.++.+++||+.........+..|.+.|..+.+.+.- .|.....+|
T Consensus 63 ~~~~~v~~~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~s~~~~~l 132 (357)
T 3i2n_A 63 EKAKPIKCGTFGATS---LQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGL-------GIGEGAPEI 132 (357)
T ss_dssp EESSCEEEEECTTCC---TTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGG-------GCC-CCCEE
T ss_pred cccCcEEEEEEcCCC---CCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeecccc-------ccCCCccEE
Confidence 345677777775321 0136777888889999999998764556677889999999887531 123333666
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc-eEEEEec-C----CeEEEEE----ecC
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN-YVHVLRF-R----STVYMVR----CSP 209 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~-~V~tL~f-~----s~V~sV~----~s~ 209 (627)
+... .+++|++||+++++ .+.+++. . ..|+++. +++
T Consensus 133 ~~~~----------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (357)
T 3i2n_A 133 VTGS----------------------------------RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ 178 (357)
T ss_dssp EEEE----------------------------------TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-
T ss_pred EEEe----------------------------------CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC
Confidence 5432 12569999999987 7888863 2 2788988 443
Q ss_pred --cEEEEEeC-CeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCC
Q 046828 210 --RIVAVGLA-AQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTP 286 (627)
Q Consensus 210 --~~LaV~~~-~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~ 286 (627)
++|+++.. +.|++||+.+++.... ..+..+ +.. +++.+...
T Consensus 179 ~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~-------------v~~-------~~~~~~~~--------------- 222 (357)
T 3i2n_A 179 EERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNG-------------VCS-------LEFDRKDI--------------- 222 (357)
T ss_dssp CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSC-------------EEE-------EEESCSSS---------------
T ss_pred CCCEEEEEccCCeEEEEECccCceeee-cCCCCc-------------eEE-------EEcCCCCC---------------
Confidence 77887765 6899999999886443 333222 222 33332100
Q ss_pred CCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCe
Q 046828 287 PSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGM 366 (627)
Q Consensus 287 ~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~ 366 (627)
.+.. + ..+..+|.
T Consensus 223 ----------~~~~-----------------------------------------------------l----~~~~~dg~ 235 (357)
T 3i2n_A 223 ----------SMNK-----------------------------------------------------L----VATSLEGK 235 (357)
T ss_dssp ----------SCCE-----------------------------------------------------E----EEEESTTE
T ss_pred ----------CCCE-----------------------------------------------------E----EEECCCCe
Confidence 0000 0 02346899
Q ss_pred EEEEECCCCeEEEEe-----ccCCCCeEEEEECCCCC-EEEEEeCCCCEEEEEeCCCCCCCC---CCCCCccccCCCCce
Q 046828 367 VVVKDIVSRSVISQF-----RAHTSPISALCFDRSGT-LLVTASIHGNNINIFRIMPSSSKG---RSGSASQTYDWTSSH 437 (627)
Q Consensus 367 V~IwD~~s~~~l~~~-----~aH~~~Is~laFspdG~-lLaTaS~dGt~I~Vwdi~p~~~~~---~~g~~~~~~~~~~~~ 437 (627)
|+|||+.+++.+..+ .+|..+|.+++|+|+|. +|++++.||+ |+|||+....... ..|. ........
T Consensus 236 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~g~---~~~~~~~~ 311 (357)
T 3i2n_A 236 FHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG-LHLWKYEYPIQRSKKDSEGI---EMGVAGSV 311 (357)
T ss_dssp EEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEEEECCSCC--CCTTSC---CCCCCCEE
T ss_pred EEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc-EEEeecCCCcccccccCCCC---cccccccc
Confidence 999999877654444 49999999999999999 8999999997 8999986211000 0000 00000111
Q ss_pred eEEEEEeecCCcCcEEEEEEccCCCEEE-EEeCCCeEEEEEcCCC
Q 046828 438 VHLYKLHRGMTSAVIQDICFSHYSQWIA-IVSSRGTCHIFVLTPF 481 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sIaFSpDg~~La-s~S~dgTvhIw~i~~~ 481 (627)
..+..+ .++. ..|.+++|+||+++|+ +++.||+|+||++...
T Consensus 312 ~~~~~~-~~~~-~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 312 SLLQNV-TLST-QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEEE-ECCS-SCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ceeecc-ccCC-CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 234444 5664 4699999999999999 7999999999999753
No 61
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.1e-20 Score=202.07 Aligned_cols=254 Identities=13% Similarity=0.159 Sum_probs=174.4
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCC---CCCce-EEeeecCCceEEEEEeeCCCCCCCCCCcCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVED---ATNVS-ELVSRRDDPVTFLQMQPLPAKSDGQEGFRN 134 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~---~~~~~-ells~~dG~V~~v~~lp~p~~~~~~D~f~~ 134 (627)
+.+.+.|..+.|... ..+.+++.+.|+.++|||+.. ..... .+.-.|.++|..+.+.|..
T Consensus 60 ~~h~~~V~~~~~s~~-----~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------- 123 (437)
T 3gre_A 60 ENEPNSITSSAVSPG-----ETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF----------- 123 (437)
T ss_dssp TTTTSCEEEEEEECS-----SSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS-----------
T ss_pred cCCCCceEEEEECCC-----CCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC-----------
Confidence 345688999999631 236778888889999999986 32122 2222588999999988643
Q ss_pred CCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECC---CCceEEEEecC------------
Q 046828 135 SHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLR---SHNYVHVLRFR------------ 199 (627)
Q Consensus 135 ~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~---t~~~V~tL~f~------------ 199 (627)
.+|+... .+++|++||+. +++.+..+..+
T Consensus 124 --~~l~s~s----------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 167 (437)
T 3gre_A 124 --DAFAVSS----------------------------------KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGK 167 (437)
T ss_dssp --SEEEEEE----------------------------------TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSS
T ss_pred --CEEEEEe----------------------------------CCCEEEEEEeccccCCceeeccccceeEEEEccCccc
Confidence 4555432 13789999994 67666655433
Q ss_pred -CeEEEEEe--c--CcEEEEEe-CCeEEEEeCCCCceeEEEEc--CCCCCCCCCCCcCcccccceeeEcCceEEEcCCCC
Q 046828 200 -STVYMVRC--S--PRIVAVGL-AAQIYCFDALTLESKFSVLT--YPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNP 271 (627)
Q Consensus 200 -s~V~sV~~--s--~~~LaV~~-~~~I~i~D~~t~e~~~tl~~--~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~ 271 (627)
..+.++.+ + .++|+++. ++.|++||+.+++.+.++.. |..+ +..+ ++.++..
T Consensus 168 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~-------------v~~~-------~~s~~~~ 227 (437)
T 3gre_A 168 NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGA-------------VSSI-------CIDEECC 227 (437)
T ss_dssp CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCC-------------EEEE-------EECTTSC
T ss_pred ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCc-------------eEEE-------EECCCCC
Confidence 23444442 2 35777775 56899999999999999877 3222 2223 3332110
Q ss_pred CcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCcccc
Q 046828 272 LLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKA 351 (627)
Q Consensus 272 ~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~ 351 (627)
. +
T Consensus 228 ~---------------------------------------l--------------------------------------- 229 (437)
T 3gre_A 228 V---------------------------------------L--------------------------------------- 229 (437)
T ss_dssp E---------------------------------------E---------------------------------------
T ss_pred E---------------------------------------E---------------------------------------
Confidence 0 0
Q ss_pred CcccccccCCCCCCeEEEEECCCCeEEEEec-cCCCCeEEEE----ECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCC
Q 046828 352 GRNASHSSDTDIAGMVVVKDIVSRSVISQFR-AHTSPISALC----FDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGS 426 (627)
Q Consensus 352 g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~-aH~~~Is~la----FspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~ 426 (627)
..+..||.|+|||+.+++.+..+. .|..+|.+++ |+|+|.+|++++.||+ |+|||+. ++.
T Consensus 230 -------~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i~iwd~~-------~~~ 294 (437)
T 3gre_A 230 -------ILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-LTIWNFV-------KGH 294 (437)
T ss_dssp -------EEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-EEEEETT-------TTE
T ss_pred -------EEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc-EEEEEcC-------CCc
Confidence 023468999999999999999987 8888999994 5567999999999997 8999986 221
Q ss_pred CccccCCCCceeEEEEEe-----------------------ec-CCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 427 ASQTYDWTSSHVHLYKLH-----------------------RG-MTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 427 ~~~~~~~~~~~~~l~~l~-----------------------rG-~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
.+..+. .| .....|.+++|+ ++++|++++.||+|+||++....
T Consensus 295 ------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 295 ------------CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp ------------EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred ------------EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc
Confidence 222222 12 022348999999 88999999999999999998765
Q ss_pred Ceeecccc
Q 046828 483 GETVLQIQ 490 (627)
Q Consensus 483 g~~~~~~h 490 (627)
....+..|
T Consensus 362 ~~~~~~~~ 369 (437)
T 3gre_A 362 SSKAVISP 369 (437)
T ss_dssp GCEEEECC
T ss_pred cceEEecc
Confidence 55555554
No 62
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.87 E-value=1.1e-20 Score=194.65 Aligned_cols=262 Identities=13% Similarity=0.052 Sum_probs=177.3
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeee----cCCceEEEEEeeCCCCCCCCCCcCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSR----RDDPVTFLQMQPLPAKSDGQEGFRN 134 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~----~dG~V~~v~~lp~p~~~~~~D~f~~ 134 (627)
+.+.+.|..+.|... .......+++.+.++.++|||+...+.+.++-.. +++.|..+.+.|....
T Consensus 15 ~~h~~~v~~i~~~p~--~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------- 83 (366)
T 3k26_A 15 EDHNQPLFGVQFNWH--SKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNT--------- 83 (366)
T ss_dssp CTTCSCEEEEEECTT--CCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTT---------
T ss_pred cCCCCceEEEEEecc--cCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCC---------
Confidence 357789999999742 1112356778888889999999976654444322 4477889999886421
Q ss_pred CCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC---c
Q 046828 135 SHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP---R 210 (627)
Q Consensus 135 ~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~---~ 210 (627)
...+|++.. .+++|++||+++++.+.++. +...|.+++|++ +
T Consensus 84 ~~~~l~~~~----------------------------------~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 129 (366)
T 3k26_A 84 SHPLLAVAG----------------------------------SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN 129 (366)
T ss_dssp CCEEEEEEE----------------------------------TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT
T ss_pred CCCEEEEec----------------------------------CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCC
Confidence 124655432 13679999999999999998 667999999986 6
Q ss_pred EEEEEe-CCeEEEEeCCCCceeEEEE---cCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLESKFSVL---TYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSL 284 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~~~tl~---~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~ 284 (627)
+|+++. ++.|++||+.+++.+..+. .|..+ +..+++.| ++|+.++.+
T Consensus 130 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~~~l~~~~~d-------------- 182 (366)
T 3k26_A 130 LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE-------------VLSADYDLLGEKIMSCGMD-------------- 182 (366)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC-------------EEEEEECTTSSEEEEEETT--------------
T ss_pred EEEEEeCCCeEEEEEeecCeEEEEecccccccCc-------------eeEEEECCCCCEEEEecCC--------------
Confidence 777776 5689999999998887773 33322 33345443 455555433
Q ss_pred CCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCC
Q 046828 285 TPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIA 364 (627)
Q Consensus 285 t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~d 364 (627)
T Consensus 183 -------------------------------------------------------------------------------- 182 (366)
T 3k26_A 183 -------------------------------------------------------------------------------- 182 (366)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEECCCCe----------------------------EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 365 GMVVVKDIVSRS----------------------------VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 365 G~V~IwD~~s~~----------------------------~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
|.|++||+.+++ ....+..|..+|.+++|+ |.+|++++.||+ |+|||+.
T Consensus 183 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~-i~~wd~~ 259 (366)
T 3k26_A 183 HSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENA-IVCWKPG 259 (366)
T ss_dssp SCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSE-EEEEEES
T ss_pred CCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCE-EEEEeCC
Confidence 344444443332 234455699999999999 889999999997 8999986
Q ss_pred CCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccC--CCEEEEEeCCCeEEEEEcCCCC
Q 046828 417 PSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHY--SQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 417 p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpD--g~~Las~S~dgTvhIw~i~~~g 482 (627)
..... ............+.....++. ..|.+++|+|| +++|++++.||+|+||++....
T Consensus 260 ~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 260 KMEDD------IDKIKPSESNVTILGRFDYSQ-CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp STTCC------GGGCCTTCCCEEEEEEEECSS-CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred Ccccc------ccccccCCcchheeccccccC-CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 21100 000001111112233335554 35999999999 9999999999999999998643
No 63
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.87 E-value=1.4e-19 Score=194.82 Aligned_cols=276 Identities=15% Similarity=0.169 Sum_probs=209.6
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 58 SHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 58 ~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
-..+.+.|..+.|+. ..+++.+.++.++|||+++.. ....+..|.+.|.++.+.+ .
T Consensus 155 ~~~h~~~v~~~~~~~--------~~l~s~~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~---------------~ 210 (445)
T 2ovr_B 155 LVGHTGGVWSSQMRD--------NIIISGSTDRTLKVWNAETGE-CIHTLYGHTSTVRCMHLHE---------------K 210 (445)
T ss_dssp CCCCSSCEEEEEEET--------TEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEEET---------------T
T ss_pred EcCCCCCEEEEEecC--------CEEEEEeCCCeEEEEECCcCc-EEEEECCCCCcEEEEEecC---------------C
Confidence 357788999999998 479999999999999999965 4566678999999999964 3
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecCcEEEEEe
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSPRIVAVGL 216 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~~~LaV~~ 216 (627)
+|++.+. +++|++||+++++.+.++. +...|.++.+..++|+++.
T Consensus 211 ~l~s~s~----------------------------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 256 (445)
T 2ovr_B 211 RVVSGSR----------------------------------DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA 256 (445)
T ss_dssp EEEEEET----------------------------------TSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEE
T ss_pred EEEEEeC----------------------------------CCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEc
Confidence 5778883 2679999999999999986 9999999999998888876
Q ss_pred -CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCC
Q 046828 217 -AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSP 295 (627)
Q Consensus 217 -~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~ 295 (627)
++.|++||+.+++.+.++.+|..+ +..+++.+++|+.++.+..+.+|....
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~~~~~d~~i~i~d~~~--------------- 308 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQGHTNR-------------VYSLQFDGIHVVSGSLDTSIRVWDVET--------------- 308 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEECCCSSC-------------EEEEEECSSEEEEEETTSCEEEEETTT---------------
T ss_pred CCCEEEEEECCCCcEeEEecCCCCc-------------eEEEEECCCEEEEEeCCCeEEEEECCC---------------
Confidence 557999999999999999888777 456778999999998776655442110
Q ss_pred CCCcccchhhhhhhhhhhcceeecCCcce-eEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 296 SNGNLMARYAVESSKQLAAGLINLGDMGY-KTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 296 s~gs~v~~~a~~~~k~l~~gl~~lg~~g~-~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
+. ....+ .++... ..+. +....+ ..+..||.|+|||+.+
T Consensus 309 --~~------------~~~~~--~~~~~~v~~~~--------------------~~~~~l----~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 309 --GN------------CIHTL--TGHQSLTSGME--------------------LKDNIL----VSGNADSTVKIWDIKT 348 (445)
T ss_dssp --CC------------EEEEE--CCCCSCEEEEE--------------------EETTEE----EEEETTSCEEEEETTT
T ss_pred --CC------------EEEEE--cCCcccEEEEE--------------------EeCCEE----EEEeCCCeEEEEECCC
Confidence 00 00000 011100 0000 000111 2456899999999999
Q ss_pred CeEEEEecc---CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe---ecCC
Q 046828 375 RSVISQFRA---HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH---RGMT 448 (627)
Q Consensus 375 ~~~l~~~~a---H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~---rG~t 448 (627)
++.+..+.. |..+|.+++|+ +.+|++++.||+ |+|||+. ++. .+..+. .+..
T Consensus 349 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~-v~iwd~~-------~~~------------~~~~~~~~~~~~~ 406 (445)
T 2ovr_B 349 GQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGT-VKLWDLK-------TGE------------FIRNLVTLESGGS 406 (445)
T ss_dssp CCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSE-EEEEETT-------TCC------------EEEEEEECTTGGG
T ss_pred CcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCe-EEEEECC-------CCc------------eeeeeeccccCCC
Confidence 999999986 88999999996 689999999997 8999986 332 344442 1223
Q ss_pred cCcEEEEEEccCCCEEEEEeCCCe----EEEEEcCCC
Q 046828 449 SAVIQDICFSHYSQWIAIVSSRGT----CHIFVLTPF 481 (627)
Q Consensus 449 ~a~I~sIaFSpDg~~Las~S~dgT----vhIw~i~~~ 481 (627)
...|.+++|+||+.+||+++.||+ ++||+++..
T Consensus 407 ~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 407 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp TCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 456999999999999999999998 999998753
No 64
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.87 E-value=8.2e-20 Score=189.13 Aligned_cols=239 Identities=11% Similarity=0.105 Sum_probs=172.5
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
+.+.|..+.|.. +.+.+++.+.++.++|||++... +....+..|.+.|..+.+.|.. .+|
T Consensus 7 ~~~~i~~~~~s~------~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------------~~l 67 (372)
T 1k8k_C 7 LVEPISCHAWNK------DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-------------NRI 67 (372)
T ss_dssp CSSCCCEEEECT------TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-------------TEE
T ss_pred cCCCeEEEEECC------CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC-------------CEE
Confidence 567788888863 22556666688899999999753 1345556788999999998743 455
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe---cCCeEEEEEecC--cEEEE
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR---FRSTVYMVRCSP--RIVAV 214 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~---f~s~V~sV~~s~--~~LaV 214 (627)
+... .+++|++||+++++....+. +...|.++++++ ++|++
T Consensus 68 ~~~~----------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 113 (372)
T 1k8k_C 68 VTCG----------------------------------TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAV 113 (372)
T ss_dssp EEEE----------------------------------TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEE
T ss_pred EEEc----------------------------------CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEE
Confidence 5432 12569999999998776654 556999999986 67877
Q ss_pred Ee-CCeEEEEeCCCCceeEEEEc----CCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTLESKFSVLT----YPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSV 289 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~~~tl~~----~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~ 289 (627)
+. ++.|++||+.+.+....+.. |..+ +.. +++.++...
T Consensus 114 ~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~-------------i~~-------~~~~~~~~~----------------- 156 (372)
T 1k8k_C 114 GSGSRVISICYFEQENDWWVCKHIKKPIRST-------------VLS-------LDWHPNSVL----------------- 156 (372)
T ss_dssp EETTSSEEEEEEETTTTEEEEEEECTTCCSC-------------EEE-------EEECTTSSE-----------------
T ss_pred EeCCCEEEEEEecCCCcceeeeeeecccCCC-------------eeE-------EEEcCCCCE-----------------
Confidence 76 56899999988774322221 1111 222 233321100
Q ss_pred CCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE
Q 046828 290 SPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV 369 (627)
Q Consensus 290 s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I 369 (627)
+ ..+..+|.|++
T Consensus 157 ----------------------------------------------------------------l----~~~~~dg~i~~ 168 (372)
T 1k8k_C 157 ----------------------------------------------------------------L----AAGSCDFKCRI 168 (372)
T ss_dssp ----------------------------------------------------------------E----EEEETTSCEEE
T ss_pred ----------------------------------------------------------------E----EEEcCCCCEEE
Confidence 0 01245788888
Q ss_pred EEC------------------CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcccc
Q 046828 370 KDI------------------VSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTY 431 (627)
Q Consensus 370 wD~------------------~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~ 431 (627)
||+ ..++.+..+..|..+|.+++|+|+|.+|++++.||+ |+|||+. ++.
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~-------~~~----- 235 (372)
T 1k8k_C 169 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADAD-------KKM----- 235 (372)
T ss_dssp EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGG-------GTT-----
T ss_pred EEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECC-------CCc-----
Confidence 884 467889999999999999999999999999999997 8999986 232
Q ss_pred CCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 432 DWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 432 ~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.+..+ .++. ..|.+++|+||+++|+++ .|++|+||++..
T Consensus 236 -------~~~~~-~~~~-~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 236 -------AVATL-ASET-LPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp -------EEEEE-ECSS-CCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred -------eeEEE-ccCC-CCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 45555 3443 359999999999999888 999999999976
No 65
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.87 E-value=3.7e-19 Score=186.89 Aligned_cols=260 Identities=13% Similarity=0.116 Sum_probs=166.3
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEee--ecCCceEEEEEeeCCCCCCCCCCcCCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVS--RRDDPVTFLQMQPLPAKSDGQEGFRNSH 136 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells--~~dG~V~~v~~lp~p~~~~~~D~f~~~r 136 (627)
..+.+.|..+.|... ..+.+++.+.++.++|||+..... ...+. .|.+.|..+.+.|.- .
T Consensus 70 ~~h~~~v~~~~~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~~~~~~------------~ 131 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPT-----HPTTVAVGSKGGDIILWDYDVQNK-TSFIQGMGPGDAITGMKFNQFN------------T 131 (383)
T ss_dssp CCCSSCEEEEEECSS-----CTTEEEEEEBTSCEEEEETTSTTC-EEEECCCSTTCBEEEEEEETTE------------E
T ss_pred cCCCCCEEEEEECCC-----CCCEEEEEcCCCeEEEEeCCCccc-ceeeecCCcCCceeEEEeCCCC------------C
Confidence 456788999999642 125677777788899999997653 33333 488999999987621 1
Q ss_pred CEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cC---CeEEEEEecC--c
Q 046828 137 PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FR---STVYMVRCSP--R 210 (627)
Q Consensus 137 pLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~---s~V~sV~~s~--~ 210 (627)
.+|+... .+++|++||+++ +.+..+. .. ..|.++++++ +
T Consensus 132 ~~l~s~~----------------------------------~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~ 176 (383)
T 3ei3_B 132 NQLFVSS----------------------------------IRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ 176 (383)
T ss_dssp EEEEEEE----------------------------------TTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT
T ss_pred CEEEEEe----------------------------------CCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC
Confidence 3454322 137799999996 5566665 22 5799999987 6
Q ss_pred EEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSV 289 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~ 289 (627)
+|+++. ++.|++||+ +++.+.++..|..+ +..+++ .++...
T Consensus 177 ~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~-------------v~~~~~-------~~~~~~----------------- 218 (383)
T 3ei3_B 177 MLATGDSTGRLLLLGL-DGHEIFKEKLHKAK-------------VTHAEF-------NPRCDW----------------- 218 (383)
T ss_dssp EEEEEETTSEEEEEET-TSCEEEEEECSSSC-------------EEEEEE-------CSSCTT-----------------
T ss_pred EEEEECCCCCEEEEEC-CCCEEEEeccCCCc-------------EEEEEE-------CCCCCC-----------------
Confidence 777776 568999999 57778888776543 223333 332100
Q ss_pred CCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEE
Q 046828 290 SPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVV 369 (627)
Q Consensus 290 s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~I 369 (627)
+ + ..++.||.|+|
T Consensus 219 ----------~-----------l----------------------------------------------~s~~~d~~i~i 231 (383)
T 3ei3_B 219 ----------L-----------M----------------------------------------------ATSSVDATVKL 231 (383)
T ss_dssp ----------E-----------E----------------------------------------------EEEETTSEEEE
T ss_pred ----------E-----------E----------------------------------------------EEEeCCCEEEE
Confidence 0 0 01345778888
Q ss_pred EECCC----CeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCC-CCCCC---------c------
Q 046828 370 KDIVS----RSVISQFRAHTSPISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKG-RSGSA---------S------ 428 (627)
Q Consensus 370 wD~~s----~~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~-~~g~~---------~------ 428 (627)
||+.+ ++.+..+ .|..+|.+++|+| +|++|++++.||+ |+|||+....... ..+.. .
T Consensus 232 wd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 309 (383)
T 3ei3_B 232 WDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNE-IRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHP 309 (383)
T ss_dssp EEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSE-EEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECS
T ss_pred EeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCc-EEEEECCCCccccccccccccccccccceEEeccC
Confidence 88876 5555555 6888888888888 8888888888886 7888875211000 00000 0
Q ss_pred ---------c-----ccCCCCc--------eeEEEEEeecC-CcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 429 ---------Q-----TYDWTSS--------HVHLYKLHRGM-TSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 429 ---------~-----~~~~~~~--------~~~l~~l~rG~-t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
. ....... ...+..+ .++ ....|..++|+||+++|++++ ||+|+||+++.
T Consensus 310 ~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l-~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 310 MYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQL-RDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEE-CBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCCceEEEecCCcccccCCCCeEEEEecCCCceeeee-cCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 0 0000000 0123333 232 234477789999999999997 89999999864
No 66
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.86 E-value=1.2e-19 Score=207.72 Aligned_cols=227 Identities=15% Similarity=0.195 Sum_probs=159.6
Q ss_pred CCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 80 FKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 80 ~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
.+.+++.+.++.++|||+..... ...+..|.+.|..+.+.|.. .+|+..+
T Consensus 442 g~~l~sgs~Dg~v~vwd~~~~~~-~~~~~~h~~~v~~~~~s~~~-------------~~l~s~s---------------- 491 (694)
T 3dm0_A 442 GQFALSGSWDGELRLWDLAAGVS-TRRFVGHTKDVLSVAFSLDN-------------RQIVSAS---------------- 491 (694)
T ss_dssp SSEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECTTS-------------SCEEEEE----------------
T ss_pred CCEEEEEeCCCcEEEEECCCCcc-eeEEeCCCCCEEEEEEeCCC-------------CEEEEEe----------------
Confidence 46778888899999999998553 44556788999999987643 4454322
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe----cCCeEEEEEecC----cEEEEEe-CCeEEEEeCCCCce
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR----FRSTVYMVRCSP----RIVAVGL-AAQIYCFDALTLES 230 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~----f~s~V~sV~~s~----~~LaV~~-~~~I~i~D~~t~e~ 230 (627)
.+++|+|||+.......... +...|.++++++ ..|+++. ++.|++||+.+.+.
T Consensus 492 ------------------~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~ 553 (694)
T 3dm0_A 492 ------------------RDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL 553 (694)
T ss_dssp ------------------TTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred ------------------CCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE
Confidence 13679999987654433322 345799999987 3566665 66899999999998
Q ss_pred eEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhh
Q 046828 231 KFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSK 310 (627)
Q Consensus 231 ~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k 310 (627)
..++.+|..+ +..+++ .++...
T Consensus 554 ~~~~~~h~~~-------------v~~v~~-------spdg~~-------------------------------------- 575 (694)
T 3dm0_A 554 RSTLAGHTGY-------------VSTVAV-------SPDGSL-------------------------------------- 575 (694)
T ss_dssp EEEECCCSSC-------------EEEEEE-------CTTSSE--------------------------------------
T ss_pred EEEEcCCCCC-------------EEEEEE-------eCCCCE--------------------------------------
Confidence 8888777543 223333 322100
Q ss_pred hhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEE
Q 046828 311 QLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISA 390 (627)
Q Consensus 311 ~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~ 390 (627)
+ .+++.||.|+|||+.+++.+..+..| ..|.+
T Consensus 576 -l----------------------------------------------~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~ 607 (694)
T 3dm0_A 576 -C----------------------------------------------ASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHA 607 (694)
T ss_dssp -E----------------------------------------------EEEETTSBCEEEETTTTEEEECCBCS-SCEEE
T ss_pred -E----------------------------------------------EEEeCCCeEEEEECCCCceEEEecCC-CcEEE
Confidence 0 02347899999999999988887754 68999
Q ss_pred EEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee------------cC-----CcCcEE
Q 046828 391 LCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR------------GM-----TSAVIQ 453 (627)
Q Consensus 391 laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r------------G~-----t~a~I~ 453 (627)
++|+|++.+|++++.++ |+|||+. ++. .+.++.. |. ....|.
T Consensus 608 ~~~sp~~~~l~~~~~~~--i~iwd~~-------~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (694)
T 3dm0_A 608 LCFSPNRYWLCAATEHG--IKIWDLE-------SKS------------IVEDLKVDLKAEAEKADNSGPAATKRKVIYCT 666 (694)
T ss_dssp EEECSSSSEEEEEETTE--EEEEETT-------TTE------------EEEEECCCCC----------------CCCCEE
T ss_pred EEEcCCCcEEEEEcCCC--EEEEECC-------CCC------------ChhhhccccccccccccccccccCCceeEEee
Confidence 99999999999988664 8999986 221 2222210 00 011278
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 454 DICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 454 sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
+++|||||++|++++.||+|+||++..|
T Consensus 667 ~l~~spdg~~l~sgs~Dg~i~iW~i~~~ 694 (694)
T 3dm0_A 667 SLNWSADGSTLFSGYTDGVIRVWGIGRY 694 (694)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred eEEEcCCCCEEEEEcCCCeEEEEeccCC
Confidence 9999999999999999999999999753
No 67
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.86 E-value=1.9e-19 Score=186.48 Aligned_cols=181 Identities=10% Similarity=0.041 Sum_probs=137.5
Q ss_pred CcEEEEEECCC-----CceEEEEec-CCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcC
Q 046828 179 PTAVRFYSLRS-----HNYVHVLRF-RSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSG 249 (627)
Q Consensus 179 ~~tV~lwdl~t-----~~~V~tL~f-~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~ 249 (627)
+++|++||+.+ +.++++++. ...|.++++++ ++|+++. ++.|++||+.+++.+.++.+|..+
T Consensus 39 D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~--------- 109 (319)
T 3frx_A 39 DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD--------- 109 (319)
T ss_dssp TSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC---------
T ss_pred CccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc---------
Confidence 47899999864 345777874 45999999987 6777775 668999999999999999887653
Q ss_pred cccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEee
Q 046828 250 VNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSR 329 (627)
Q Consensus 250 ~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~ 329 (627)
+..+ ++.++... +
T Consensus 110 ----v~~~-------~~~~~~~~---------------------------------------l----------------- 122 (319)
T 3frx_A 110 ----VMSV-------DIDKKASM---------------------------------------I----------------- 122 (319)
T ss_dssp ----EEEE-------EECTTSCE---------------------------------------E-----------------
T ss_pred ----EEEE-------EEcCCCCE---------------------------------------E-----------------
Confidence 2223 33321100 0
Q ss_pred eeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCC------CCEEEEE
Q 046828 330 YYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRS------GTLLVTA 403 (627)
Q Consensus 330 y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspd------G~lLaTa 403 (627)
..++.||.|+|||+. ++.+..+.+|...|.+++|+|. +.+|+++
T Consensus 123 -----------------------------~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~ 172 (319)
T 3frx_A 123 -----------------------------ISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172 (319)
T ss_dssp -----------------------------EEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEE
T ss_pred -----------------------------EEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEE
Confidence 124578999999997 4678889999999999999995 5599999
Q ss_pred eCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 404 SIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 404 S~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
+.||+ |++||+. .+ .....+ .||. ..|.+++|+||+++|++++.||+|+||++.....
T Consensus 173 ~~d~~-i~~wd~~-------~~------------~~~~~~-~~h~-~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~ 230 (319)
T 3frx_A 173 GNDKM-VKAWNLN-------QF------------QIEADF-IGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA 230 (319)
T ss_dssp ETTSC-EEEEETT-------TT------------EEEEEE-CCCC-SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred eCCCE-EEEEECC-------cc------------hhheee-cCCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 99998 8999985 22 133333 5765 3599999999999999999999999999986543
Q ss_pred eeec
Q 046828 484 ETVL 487 (627)
Q Consensus 484 ~~~~ 487 (627)
...+
T Consensus 231 ~~~~ 234 (319)
T 3frx_A 231 MYTL 234 (319)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 3333
No 68
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.86 E-value=7.4e-20 Score=187.58 Aligned_cols=255 Identities=11% Similarity=-0.005 Sum_probs=173.4
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCC--ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATN--VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSH 136 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~--~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~r 136 (627)
..+.+.|..+.|... .+.+++.+.++.++|||+..... ....+..|.+.|.++.+.|..
T Consensus 8 ~~h~~~v~~~~~s~~------~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------- 68 (342)
T 1yfq_A 8 QAPKDYISDIKIIPS------KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT------------- 68 (342)
T ss_dssp SCCSSCEEEEEEEGG------GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-------------
T ss_pred cCCCCcEEEEEEcCC------CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC-------------
Confidence 367788999999752 36677888889999999997551 123334688999999998753
Q ss_pred C-EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEEC-CCCceEEEEe---cCCeEEEEEecC-c
Q 046828 137 P-LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSL-RSHNYVHVLR---FRSTVYMVRCSP-R 210 (627)
Q Consensus 137 p-Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl-~t~~~V~tL~---f~s~V~sV~~s~-~ 210 (627)
. +|++.. .+++|++||+ ++++. ..+. +...|.++++++ +
T Consensus 69 ~~~l~~~~----------------------------------~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~ 113 (342)
T 1yfq_A 69 DLQIYVGT----------------------------------VQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDD 113 (342)
T ss_dssp SEEEEEEE----------------------------------TTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTT
T ss_pred CcEEEEEc----------------------------------CCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCC
Confidence 5 555432 1256999999 88876 4444 566999999985 6
Q ss_pred EEEEEe-CCeEEEEeCCC---------CceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccC
Q 046828 211 IVAVGL-AAQIYCFDALT---------LESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLS 280 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t---------~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~ 280 (627)
+|+++. ++.|++||+.+ ++.+.++. ++.. +..+++.+..|+
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~-------------v~~~~~~~~~l~--------------- 164 (342)
T 1yfq_A 114 KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNK-------------IFTMDTNSSRLI--------------- 164 (342)
T ss_dssp EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCC-------------EEEEEECSSEEE---------------
T ss_pred EEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCc-------------eEEEEecCCcEE---------------
Confidence 777665 56899999886 33322221 1110 111222111111
Q ss_pred CCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccC
Q 046828 281 PQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSD 360 (627)
Q Consensus 281 ~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~ 360 (627)
.
T Consensus 165 -------------------------------------------------------------------------------~ 165 (342)
T 1yfq_A 165 -------------------------------------------------------------------------------V 165 (342)
T ss_dssp -------------------------------------------------------------------------------E
T ss_pred -------------------------------------------------------------------------------E
Confidence 1
Q ss_pred CCCCCeEEEEECCC-Ce--EEEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 361 TDIAGMVVVKDIVS-RS--VISQFRAHTSPISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 361 ~~~dG~V~IwD~~s-~~--~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
+..+|.|++||+.+ +. .......|..+|.+++|+| +|.+|++++.+|+ |+||++...... ....
T Consensus 166 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i~~~~~~~~~-~~~~---------- 233 (342)
T 1yfq_A 166 GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDD-YNSS---------- 233 (342)
T ss_dssp EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCS-TTCT----------
T ss_pred EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc-EEEEEEcCCCcc-cccc----------
Confidence 34678999999998 43 3445567899999999999 9999999999997 899998632000 0001
Q ss_pred eeEEEEEeecCC--------cCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccc
Q 046828 437 HVHLYKLHRGMT--------SAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 437 ~~~l~~l~rG~t--------~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h 490 (627)
.+..+ +++. ...|.+++|+||+++|++++.||+|+||++........+..|
T Consensus 234 --~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 292 (342)
T 1yfq_A 234 --KRFAF-RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292 (342)
T ss_dssp --TCEEE-ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred --cceee-ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence 12222 2332 236999999999999999999999999999765444444444
No 69
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.86 E-value=6.2e-20 Score=197.58 Aligned_cols=239 Identities=13% Similarity=0.164 Sum_probs=171.9
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
+.+.|..+.|| .+.+++.+.++.++|||+++... ...+..|.+.|..+.+. + .+|+
T Consensus 172 h~~~v~~l~~~--------~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~--~-------------~~l~ 227 (435)
T 1p22_A 172 HTGSVLCLQYD--------ERVIITGSSDSTVRVWDVNTGEM-LNTLIHHCEAVLHLRFN--N-------------GMMV 227 (435)
T ss_dssp CSSCEEEEECC--------SSEEEEEETTSCEEEEESSSCCE-EEEECCCCSCEEEEECC--T-------------TEEE
T ss_pred CCCcEEEEEEC--------CCEEEEEcCCCeEEEEECCCCcE-EEEEcCCCCcEEEEEEc--C-------------CEEE
Confidence 55667777773 25677788888899999998653 44555678888777763 1 3444
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceE---EEEe-cCCeEEEEEecCcEEEEEe
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYV---HVLR-FRSTVYMVRCSPRIVAVGL 216 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V---~tL~-f~s~V~sV~~s~~~LaV~~ 216 (627)
..+ .+++|++||+++++.+ ..+. +...|.++.+..+.|+++.
T Consensus 228 s~s----------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~ 273 (435)
T 1p22_A 228 TCS----------------------------------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSAS 273 (435)
T ss_dssp EEE----------------------------------TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred Eee----------------------------------CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEe
Confidence 322 1366999999998876 4444 4569999999988888886
Q ss_pred -CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCC
Q 046828 217 -AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSP 295 (627)
Q Consensus 217 -~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~ 295 (627)
++.|++||+.+++.+.++.+|..+ +..+++.+++|+.
T Consensus 274 ~dg~i~vwd~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~~----------------------------- 311 (435)
T 1p22_A 274 GDRTIKVWNTSTCEFVRTLNGHKRG-------------IACLQYRDRLVVS----------------------------- 311 (435)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEEETTEEEE-----------------------------
T ss_pred CCCeEEEEECCcCcEEEEEcCCCCc-------------EEEEEeCCCEEEE-----------------------------
Confidence 568999999999999998876543 2223332222222
Q ss_pred CCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC
Q 046828 296 SNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR 375 (627)
Q Consensus 296 s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~ 375 (627)
++.||.|+|||+.++
T Consensus 312 -----------------------------------------------------------------g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 312 -----------------------------------------------------------------GSSDNTIRLWDIECG 326 (435)
T ss_dssp -----------------------------------------------------------------EETTSCEEEEETTTC
T ss_pred -----------------------------------------------------------------EeCCCeEEEEECCCC
Confidence 246889999999999
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEE
Q 046828 376 SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDI 455 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sI 455 (627)
+.+..+.+|..+|.+++| +|.+|++++.||+ |+|||+...... . .......+..+ .++. ..|.++
T Consensus 327 ~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~-i~vwd~~~~~~~---~-------~~~~~~~~~~~-~~h~-~~v~~l 391 (435)
T 1p22_A 327 ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLVAALDP---R-------APAGTLCLRTL-VEHS-GRVFRL 391 (435)
T ss_dssp CEEEEECCCSSCEEEEEC--CSSEEEEEETTSC-EEEEEHHHHTST---T-------SCTTTTEEEEE-CCCS-SCCCCE
T ss_pred CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc-EEEEECCCCCCc---c-------ccccchheeec-cCCC-CCeEEE
Confidence 999999999999999999 7999999999998 899998511100 0 00000134444 5655 359999
Q ss_pred EEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 456 CFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 456 aFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
+| |+++|++++.||+|+||++...
T Consensus 392 ~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 392 QF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EE--CSSCEEECCSSSEEEEEC----
T ss_pred Ee--CCCEEEEEeCCCEEEEEECCCC
Confidence 99 8899999999999999999764
No 70
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.6e-20 Score=205.75 Aligned_cols=264 Identities=14% Similarity=0.092 Sum_probs=170.3
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCc----------eEEeeecCCceEEEEEeeCCCCCCCCCC
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNV----------SELVSRRDDPVTFLQMQPLPAKSDGQEG 131 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~----------~ells~~dG~V~~v~~lp~p~~~~~~D~ 131 (627)
...|..+.|............++.++.|+.++|||+...... ...+..|+++|.++.+.+.
T Consensus 207 ~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--------- 277 (524)
T 2j04_B 207 FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--------- 277 (524)
T ss_dssp CCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---------
T ss_pred CCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---------
Confidence 355777787532000012356777888999999999865321 1245567888888888641
Q ss_pred cCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc-eEEEEec-CCeEEEE--Ee
Q 046828 132 FRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN-YVHVLRF-RSTVYMV--RC 207 (627)
Q Consensus 132 f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~-~V~tL~f-~s~V~sV--~~ 207 (627)
.+|+... .+++|++||+++++ ++.++.. ...|.+| .+
T Consensus 278 -----~~lasgs----------------------------------~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~ 318 (524)
T 2j04_B 278 -----TTVVCGF----------------------------------KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAY 318 (524)
T ss_dssp -----SEEEEEE----------------------------------TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEEC
T ss_pred -----CeEEEEe----------------------------------CCCEEEEEECCCCCCceEEeecccccEEEEEEEc
Confidence 2444321 24789999999874 4566774 5699999 45
Q ss_pred cC---cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCC
Q 046828 208 SP---RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQS 283 (627)
Q Consensus 208 s~---~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~ 283 (627)
++ ++||++. +++|+|||+++++.+.++.+|... .+ + .-++|.++...
T Consensus 319 s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~---------~~--v-------~~v~fsp~~~~----------- 369 (524)
T 2j04_B 319 SDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG---------SN--L-------VPVVYCPQIYS----------- 369 (524)
T ss_dssp CTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC---------CS--C-------CCEEEETTTTE-----------
T ss_pred CCCCCeEEEEeccCCeEEEEECCCCCccccccccccc---------Cc--c-------cceEeCCCcCe-----------
Confidence 64 5778776 568999999998887777665321 00 1 12344432100
Q ss_pred CCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCC
Q 046828 284 LTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDI 363 (627)
Q Consensus 284 ~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~ 363 (627)
+ +.++.
T Consensus 370 ----------------------------l----------------------------------------------~s~~~ 375 (524)
T 2j04_B 370 ----------------------------Y----------------------------------------------IYSDG 375 (524)
T ss_dssp ----------------------------E----------------------------------------------EEECS
T ss_pred ----------------------------E----------------------------------------------EEeCC
Confidence 0 02346
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCC-C-C-------ccccCCC
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSG-S-A-------SQTYDWT 434 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g-~-~-------~~~~~~~ 434 (627)
|++|+|||+.++..+..+.+|..+|.+|+|+|+|++||+|+.||+ |+|||+....-.+-.+ . . .-+..+.
T Consensus 376 d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt-v~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 454 (524)
T 2j04_B 376 ASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS-LIITNAARRLLHGIKNSSATQKSLRLWKWDYSIK 454 (524)
T ss_dssp SSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE-EECCBSCSSTTTCC------CCCCEEEECBCCSS
T ss_pred CCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE-EEEEechHhhccccccCccceeeeEEEEeccCCC
Confidence 789999999999888889999999999999999999999999998 7999964211000000 0 0 0000000
Q ss_pred Cc----------------eeEEEEEeecCCcCcEEEEEEccCC---CEEEEEeCCCeEEEEEcC
Q 046828 435 SS----------------HVHLYKLHRGMTSAVIQDICFSHYS---QWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 435 ~~----------------~~~l~~l~rG~t~a~I~sIaFSpDg---~~Las~S~dgTvhIw~i~ 479 (627)
.. -..+..+ +|+. ..|.+|+|+||+ .+||+++.+|+|+||++.
T Consensus 455 g~~~~~~~~~~~~~~~~~g~~~~~l-~gh~-~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 455 DDKYRIDSSYEVYPLTVNDVSKAKI-DAHG-INITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp SCEEEECCCCCCCC--------------CC-CSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred CCeEEccCCceecccccCCcceeee-cCCC-ceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 00 1122333 4554 359999999995 499999999999999986
No 71
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.86 E-value=7.7e-19 Score=189.06 Aligned_cols=226 Identities=15% Similarity=0.185 Sum_probs=173.3
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
+.+++.+.++.++|||+.+.. ....+..|.+.|.++.+.+ .+|+...
T Consensus 130 ~~l~sg~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~---------------~~l~s~~----------------- 176 (445)
T 2ovr_B 130 NRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTGGVWSSQMRD---------------NIIISGS----------------- 176 (445)
T ss_dssp TEEEEEETTSCEEEEETTTCC-EEEECCCCSSCEEEEEEET---------------TEEEEEE-----------------
T ss_pred CEEEEEECCCcEEEEECCCCc-EEEEEcCCCCCEEEEEecC---------------CEEEEEe-----------------
Confidence 678888889999999999755 4455667889998888752 3444322
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecCcEEEEEe-CCeEEEEeCCCCceeEEEEcCC
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSPRIVAVGL-AAQIYCFDALTLESKFSVLTYP 238 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p 238 (627)
.+++|++||+++++.++++. +...|.++.++++.|+++. ++.|++||+.+++.+.++.+|.
T Consensus 177 -----------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 239 (445)
T 2ovr_B 177 -----------------TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 239 (445)
T ss_dssp -----------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCS
T ss_pred -----------------CCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCc
Confidence 13679999999999999998 5569999999998888876 5689999999999998888765
Q ss_pred CCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceee
Q 046828 239 VPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLIN 318 (627)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~ 318 (627)
.+ +..+++.+++|+
T Consensus 240 ~~-------------v~~~~~~~~~l~----------------------------------------------------- 253 (445)
T 2ovr_B 240 AA-------------VRCVQYDGRRVV----------------------------------------------------- 253 (445)
T ss_dssp SC-------------EEEEEECSSCEE-----------------------------------------------------
T ss_pred cc-------------EEEEEECCCEEE-----------------------------------------------------
Confidence 43 222332222222
Q ss_pred cCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCC
Q 046828 319 LGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGT 398 (627)
Q Consensus 319 lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~ 398 (627)
.+..||.|++||+.+++.+..+.+|..+|.+++| +|.
T Consensus 254 -----------------------------------------~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~ 290 (445)
T 2ovr_B 254 -----------------------------------------SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI 290 (445)
T ss_dssp -----------------------------------------EEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSS
T ss_pred -----------------------------------------EEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCC
Confidence 1346889999999999999999999999999999 899
Q ss_pred EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 399 LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 399 lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
+|++++.||+ |++||+. ++. .+..+ .++. ..|.+++| ++++|++++.||+|+||++
T Consensus 291 ~l~~~~~d~~-i~i~d~~-------~~~------------~~~~~-~~~~-~~v~~~~~--~~~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 291 HVVSGSLDTS-IRVWDVE-------TGN------------CIHTL-TGHQ-SLTSGMEL--KDNILVSGNADSTVKIWDI 346 (445)
T ss_dssp EEEEEETTSC-EEEEETT-------TCC------------EEEEE-CCCC-SCEEEEEE--ETTEEEEEETTSCEEEEET
T ss_pred EEEEEeCCCe-EEEEECC-------CCC------------EEEEE-cCCc-ccEEEEEE--eCCEEEEEeCCCeEEEEEC
Confidence 9999999998 8999986 231 44444 4554 34777766 5779999999999999999
Q ss_pred CCCCCeeeccc
Q 046828 479 TPFGGETVLQI 489 (627)
Q Consensus 479 ~~~gg~~~~~~ 489 (627)
........+..
T Consensus 347 ~~~~~~~~~~~ 357 (445)
T 2ovr_B 347 KTGQCLQTLQG 357 (445)
T ss_dssp TTCCEEEEECS
T ss_pred CCCcEEEEEcc
Confidence 76544444444
No 72
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.2e-19 Score=181.84 Aligned_cols=244 Identities=11% Similarity=0.162 Sum_probs=173.8
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.+.+.|..+.|.. ..+.+++.+.++.++|||+.....+ ..+. +.++|..+.+.|.. .+|
T Consensus 72 ~h~~~v~~~~~~~------~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~-~~~~v~~~~~~~~~-------------~~l 130 (369)
T 3zwl_B 72 GHTGTIWSIDVDC------FTKYCVTGSADYSIKLWDVSNGQCV-ATWK-SPVPVKRVEFSPCG-------------NYF 130 (369)
T ss_dssp CCSSCEEEEEECT------TSSEEEEEETTTEEEEEETTTCCEE-EEEE-CSSCEEEEEECTTS-------------SEE
T ss_pred hcCCcEEEEEEcC------CCCEEEEEeCCCeEEEEECCCCcEE-EEee-cCCCeEEEEEccCC-------------CEE
Confidence 3566787888853 2367888888889999999986533 3333 77888888887642 566
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCce-----------EEEEe-cCC--eEEEE
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNY-----------VHVLR-FRS--TVYMV 205 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~-----------V~tL~-f~s--~V~sV 205 (627)
++.. +.. ...++.|++||+++++. +..+. +.. .|.++
T Consensus 131 ~~~~-~~~----------------------------~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 131 LAIL-DNV----------------------------MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp EEEE-CCB----------------------------TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred EEec-CCc----------------------------cCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 5443 110 01237799999987753 33333 222 89999
Q ss_pred EecC--cEEEEEe-CCeEEEEeCCC-CceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCC
Q 046828 206 RCSP--RIVAVGL-AAQIYCFDALT-LESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSP 281 (627)
Q Consensus 206 ~~s~--~~LaV~~-~~~I~i~D~~t-~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~ 281 (627)
++++ ++|+++. ++.|++||+.+ .+.+..+..|..+ +..+ ++.++...
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------------v~~~-------~~~~~~~~--------- 232 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS-------------ISDM-------QFSPDLTY--------- 232 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSC-------------EEEE-------EECTTSSE---------
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc-------------eeEE-------EECCCCCE---------
Confidence 9987 6777775 56899999999 6777777665432 2223 33321100
Q ss_pred CCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCC
Q 046828 282 QSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDT 361 (627)
Q Consensus 282 q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~ 361 (627)
+ ..+
T Consensus 233 ------------------------------l----------------------------------------------~~~ 236 (369)
T 3zwl_B 233 ------------------------------F----------------------------------------------ITS 236 (369)
T ss_dssp ------------------------------E----------------------------------------------EEE
T ss_pred ------------------------------E----------------------------------------------EEe
Confidence 0 012
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCC-------------EEEEEeCCCCCCCCCCCCCc
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGN-------------NINIFRIMPSSSKGRSGSAS 428 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt-------------~I~Vwdi~p~~~~~~~g~~~ 428 (627)
..+|.|+|||+.+++.+..+. |..++.+++|+|+|++|++++.++. .|++||+. .+
T Consensus 237 ~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-------~~--- 305 (369)
T 3zwl_B 237 SRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI-------FE--- 305 (369)
T ss_dssp ETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT-------TC---
T ss_pred cCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC-------CC---
Confidence 468899999999999988888 7889999999999999999999883 37999975 22
Q ss_pred cccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 429 QTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 429 ~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
..+..+ .++. ..|.+++|+||+++|++++.||+|+||+++.
T Consensus 306 ---------~~~~~~-~~~~-~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 306 ---------EEIGRV-QGHF-GPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp ---------CEEEEE-ECCS-SCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred ---------cchhhe-eccc-CcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 144444 5664 3599999999999999999999999999975
No 73
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.86 E-value=3.5e-19 Score=191.95 Aligned_cols=238 Identities=13% Similarity=0.162 Sum_probs=176.7
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.+.+.|..+.|.. + ..+++.+.++.++|||+++.. ....+..|.+.|.++.+.+.+. ..+|
T Consensus 160 ~h~~~V~~l~~~~----~---~~l~s~s~dg~i~vwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~-----------~~~l 220 (464)
T 3v7d_B 160 GHDGGVWALKYAH----G---GILVSGSTDRTVRVWDIKKGC-CTHVFEGHNSTVRCLDIVEYKN-----------IKYI 220 (464)
T ss_dssp CCSSCEEEEEECS----T---TEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEEEESSS-----------CEEE
T ss_pred CCCcCEEEEEEcC----C---CEEEEEeCCCCEEEEECCCCc-EEEEECCCCCccEEEEEecCCC-----------CCEE
Confidence 4667777777742 1 378888889999999999754 4556667899999999987652 1455
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCce-----------------------EEEE
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNY-----------------------VHVL 196 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~-----------------------V~tL 196 (627)
+... .+++|++||+++++. +..+
T Consensus 221 ~s~s----------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 221 VTGS----------------------------------RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp EEEE----------------------------------TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred EEEc----------------------------------CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence 4322 136699999998764 3444
Q ss_pred e-cCCeEEEEEecCcEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcC
Q 046828 197 R-FRSTVYMVRCSPRIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLP 274 (627)
Q Consensus 197 ~-f~s~V~sV~~s~~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~ 274 (627)
. +...|.++....++|+++. ++.|++||+.+++.+.++.+|..+ +.. +++.++...
T Consensus 267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------------v~~-------~~~~~~~~~-- 324 (464)
T 3v7d_B 267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR-------------IYS-------TIYDHERKR-- 324 (464)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEE-------EEEETTTTE--
T ss_pred cCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC-------------EEE-------EEEcCCCCE--
Confidence 4 3458888888888888876 558999999999998888766443 222 333322100
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcc
Q 046828 275 NTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRN 354 (627)
Q Consensus 275 ~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~ 354 (627)
+
T Consensus 325 -------------------------------------l------------------------------------------ 325 (464)
T 3v7d_B 325 -------------------------------------C------------------------------------------ 325 (464)
T ss_dssp -------------------------------------E------------------------------------------
T ss_pred -------------------------------------E------------------------------------------
Confidence 0
Q ss_pred cccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCC
Q 046828 355 ASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWT 434 (627)
Q Consensus 355 ~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~ 434 (627)
..++.||.|+|||+.+++.+..+.+|..+|.+++|+ +.+|++++.||+ |+|||+. ++
T Consensus 326 ----~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd~~-------~~--------- 382 (464)
T 3v7d_B 326 ----ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDAN-------DY--------- 382 (464)
T ss_dssp ----EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEETT-------TC---------
T ss_pred ----EEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEECC-------CC---------
Confidence 023468999999999999999999999999999998 689999999998 8999986 22
Q ss_pred CceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 435 SSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 435 ~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
....... ....+..++|++|+++|++++ ||+|+||++...
T Consensus 383 ---~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 383 ---SRKFSYH---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp ---CEEEEEE---CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred ---ceeeeec---CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 1344443 233578899999999999998 899999999763
No 74
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.86 E-value=1.3e-19 Score=200.61 Aligned_cols=332 Identities=11% Similarity=0.031 Sum_probs=200.7
Q ss_pred cEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEee---ecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 64 QVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVS---RRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 64 ~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells---~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
.|..+.|... ..+.+++.+.++.++|||+.....+.++.. .|.++|..+.+. .. .+|+
T Consensus 208 ~v~~~~~~~~-----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~-------------~~l~ 268 (615)
T 1pgu_A 208 FVRDVEFSPD-----SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DS-------------QKFA 268 (615)
T ss_dssp CEEEEEECST-----TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SS-------------SEEE
T ss_pred eEEEEEECCC-----CCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CC-------------CEEE
Confidence 6878888531 136777788899999999998664444435 788888888876 32 4554
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-----CeEEEEEec-CcEEEE
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-----STVYMVRCS-PRIVAV 214 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-----s~V~sV~~s-~~~LaV 214 (627)
... .+++|++||+++++.+.++..+ ..+.++.++ .+.|++
T Consensus 269 ~~~----------------------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 314 (615)
T 1pgu_A 269 TVG----------------------------------ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 314 (615)
T ss_dssp EEE----------------------------------TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred EEc----------------------------------CCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEE
Confidence 432 1367999999999999999876 577888774 466766
Q ss_pred Ee-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCC-CCCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQ-SLTPPSVSPS 292 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q-~~t~~~~s~~ 292 (627)
+. ++.|++||+.+++.+..+.+|..+ +..+++ |. |+.++.+..+.+|.....+ .+..+..+..
T Consensus 315 ~~~~g~i~~~d~~~~~~~~~~~~~~~~-------------v~~~~~-~~-l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~ 379 (615)
T 1pgu_A 315 LSLDGTLNFYELGHDEVLKTISGHNKG-------------ITALTV-NP-LISGSYDGRIMEWSSSSMHQDHSNLIVSLD 379 (615)
T ss_dssp EETTSCEEEEETTEEEEEEEECCCSSC-------------EEEEET-TT-TEEEETTSCEEETTTTEEECCCCSCEEEEE
T ss_pred EECCCCEEEEECCCCcEEEEEeCCCCC-------------EEEEEe-cC-cEEECCCCeEEEEEchhhcCcccCceEEEE
Confidence 65 668999999998888888776554 445666 66 7777666655554321000 0000000000
Q ss_pred CCCCCC--------cccchhhhhhhhhh--hcceeecCCcce-------eEEeeeeccccCCCCCC-----CccC-CCcc
Q 046828 293 TSPSNG--------NLMARYAVESSKQL--AAGLINLGDMGY-------KTLSRYYQDFIPDGSSS-----PVSS-NSSW 349 (627)
Q Consensus 293 ~s~s~g--------s~v~~~a~~~~k~l--~~gl~~lg~~g~-------~~~s~y~~~~~p~g~~~-----~~s~-~~~~ 349 (627)
. +... ..+..|..+..+.. ...+ .+...+. ..+. .|. .+++... .... ...+
T Consensus 380 ~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~ 454 (615)
T 1pgu_A 380 N-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVA-SANNDGFTAVLTNDDDLL-ILQ--SFTGDIIKSVRLNSPGSAVSL 454 (615)
T ss_dssp C-CSTTCCEEEETTTEEEETTEEEEECSSCEEEE-EECSSSEEEEEETTSEEE-EEE--TTTCCEEEEEECSSCEEEEEE
T ss_pred E-CCCcEEEEEeCCCCEEEEEcccCcccCCceEE-EEcCCCCEEEEeCCCceE-EEe--ccCCceeeecccCCCceEEEE
Confidence 0 0000 00100100000000 0000 0000000 0000 000 0000000 0000 0000
Q ss_pred ccCcccccccCCCC-CCeEEEEECCCCeEE-EEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCC
Q 046828 350 KAGRNASHSSDTDI-AGMVVVKDIVSRSVI-SQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSA 427 (627)
Q Consensus 350 ~~g~~~~~~~~~~~-dG~V~IwD~~s~~~l-~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~ 427 (627)
. +.. ...+.. +|.|++||+.+++.. ..+..|..+|.+++|+|+|++|++++.||+ |+|||+. ++
T Consensus 455 ~-~~~---l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-i~iw~~~-------~~-- 520 (615)
T 1pgu_A 455 S-QNY---VAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQ-------SR-- 520 (615)
T ss_dssp C-SSE---EEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETT-------TT--
T ss_pred c-CCE---EEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe-EEEeeCC-------CC--
Confidence 0 111 123456 999999999987765 778899999999999999999999999998 8999986 23
Q ss_pred ccccCCCCceeEEEEEeecCCcCcEEEEEEcc----------CCCEEEEEeCCCeEEEEEcCCC-CCeeeccccccc
Q 046828 428 SQTYDWTSSHVHLYKLHRGMTSAVIQDICFSH----------YSQWIAIVSSRGTCHIFVLTPF-GGETVLQIQNSH 493 (627)
Q Consensus 428 ~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSp----------Dg~~Las~S~dgTvhIw~i~~~-gg~~~~~~h~s~ 493 (627)
..+..+ .+.+...|.+++|+| |+++||+++.||+|+||++... .....+..|...
T Consensus 521 ----------~~~~~~-~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~ 586 (615)
T 1pgu_A 521 ----------EVKTSR-WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG 586 (615)
T ss_dssp ----------EEEECC-SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTC
T ss_pred ----------cceeEe-ecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccc
Confidence 234443 452235699999999 9999999999999999999875 334445556443
No 75
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.86 E-value=3.8e-20 Score=197.25 Aligned_cols=108 Identities=12% Similarity=0.170 Sum_probs=80.4
Q ss_pred CCCCCeEEEEECCCCeE----EEEeccCCC------------CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCC
Q 046828 361 TDIAGMVVVKDIVSRSV----ISQFRAHTS------------PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRS 424 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~----l~~~~aH~~------------~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~ 424 (627)
+..||.|+|||+.+++. +..+..|.. +|.+++|+|+|++|++++. |+ |+|||+...
T Consensus 245 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-v~iwd~~~~------ 316 (447)
T 3dw8_B 245 SSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS-VKVWDLNME------ 316 (447)
T ss_dssp EETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE-EEEEETTCC------
T ss_pred EeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce-EEEEeCCCC------
Confidence 45789999999999886 788999886 8999999999999999999 86 899998621
Q ss_pred CCCccccCCCCceeEEEEEeecCCc-----------C---cEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccc
Q 046828 425 GSASQTYDWTSSHVHLYKLHRGMTS-----------A---VIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 425 g~~~~~~~~~~~~~~l~~l~rG~t~-----------a---~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h 490 (627)
+. .+..+ +++.. . .+..++|+||+++|++++.||+|+||++... ....+..|
T Consensus 317 ~~------------~~~~~-~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~ 382 (447)
T 3dw8_B 317 NR------------PVETY-QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK-RDITLEAS 382 (447)
T ss_dssp SS------------CSCCE-ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC-CEEEEECC
T ss_pred cc------------cccee-eccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC-cceeeeec
Confidence 11 11112 33321 0 1345999999999999999999999999863 33344444
No 76
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.85 E-value=3e-19 Score=189.11 Aligned_cols=271 Identities=10% Similarity=0.023 Sum_probs=167.7
Q ss_pred CeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeee---c
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVH---V 157 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~---~ 157 (627)
+.|++.+.+..+.+|+..++...+.+..++-..+.++++.|.|... .|+.|..+.-. .+.+..+ .
T Consensus 54 ~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~~~~~~~~~~~--~~~v~sla~sp 121 (356)
T 2w18_A 54 EPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVY----------NLVCVALGNLE--IREIRALFCSS 121 (356)
T ss_dssp EEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCC----------SCEEEEECSSS--EEEEEEECC--
T ss_pred ccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCccc----------ceeeeeecccc--ccceEEEEECC
Confidence 5689999999999999999755556666665556678888888332 33333221100 0000000 0
Q ss_pred c----CcccccCCC-------CCCCCCC--CCcCCcEEEEEEC-CCCceEEEEecCC-eEEEEEecC-----cEEEEEe-
Q 046828 158 G----RDGLVRDGY-------DEPQPGN--VAMSPTAVRFYSL-RSHNYVHVLRFRS-TVYMVRCSP-----RIVAVGL- 216 (627)
Q Consensus 158 ~----~~~~~~~g~-------~~~~~~~--~~~~~~tV~lwdl-~t~~~V~tL~f~s-~V~sV~~s~-----~~LaV~~- 216 (627)
+ +.-....|. .+.+... ....+.+|++|++ .+|+.+.++..++ .|..++|++ .+||++.
T Consensus 122 d~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~ 201 (356)
T 2w18_A 122 DDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTI 201 (356)
T ss_dssp ----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEET
T ss_pred CccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecC
Confidence 0 000000000 0000000 0113688999999 5588888887554 677777765 7888865
Q ss_pred CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCC
Q 046828 217 AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTS 294 (627)
Q Consensus 217 ~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s 294 (627)
|++|+|||+.|+++++++.++.... ..+..++++| +.++....+..
T Consensus 202 D~TIkIWDl~TGk~l~tL~g~~~~v----------~~v~~vafSpdG~~lvs~s~~~~---------------------- 249 (356)
T 2w18_A 202 MNNIVIWNLKTGQLLKKMHIDDSYQ----------ASVCHKAYSEMGLLFIVLSHPCA---------------------- 249 (356)
T ss_dssp TSEEEEEETTTCCEEEEEECCC-------------CCCEEEEEEETTEEEEEEC--------------------------
T ss_pred CCcEEEEECCCCcEEEEEcCCCcce----------eeeEEEEECCCCCEEEEeccCCC----------------------
Confidence 5689999999999999998754320 0022223332 33333221000
Q ss_pred CCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 295 PSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 295 ~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
.| ..++++.|++|++||..+
T Consensus 250 -----------------------------------------------------~w-------~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 250 -----------------------------------------------------KE-------SESLRSPVFQLIVINPKT 269 (356)
T ss_dssp --------------------------------------------------------------------CCEEEEEEETTT
T ss_pred -----------------------------------------------------cc-------eeeccCCCcEEEEEECCC
Confidence 00 001456899999999999
Q ss_pred CeEEEEe-----ccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCc
Q 046828 375 RSVISQF-----RAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTS 449 (627)
Q Consensus 375 ~~~l~~~-----~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~ 449 (627)
++.+..+ .+|...+.+..+ +|.++|+++.||+ |+|||+. +|. .+..| +||+.
T Consensus 270 gk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgT-IkIWDl~-------tGk------------~l~tL-~gH~~ 326 (356)
T 2w18_A 270 TLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGT-IAIWDLL-------LGQ------------CTALL-PPVSD 326 (356)
T ss_dssp TEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSC-EEEEETT-------TCS------------EEEEE-CCC--
T ss_pred CEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCc-EEEEECC-------CCc------------EEEEe-cCCCC
Confidence 9987765 377666544444 4999999999998 8999996 442 56666 57765
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 450 AVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 450 a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
..+..++|||||++||+++.|+||+||++
T Consensus 327 ~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 327 QHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 55667999999999999999999999986
No 77
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.85 E-value=4.6e-19 Score=204.03 Aligned_cols=249 Identities=14% Similarity=0.099 Sum_probs=187.4
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.+.+.|..+.|.. ..+.+++.+.++.++|||+.+.. ....+..|+++|+++.+.|.. .+|
T Consensus 11 ~h~~~v~~i~~sp------~~~~la~~~~~g~v~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~-------------~~l 70 (814)
T 3mkq_A 11 NRSDRVKGIDFHP------TEPWVLTTLYSGRVEIWNYETQV-EVRSIQVTETPVRAGKFIARK-------------NWI 70 (814)
T ss_dssp EECSCEEEEEECS------SSSEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEEEGGG-------------TEE
T ss_pred cCCCceEEEEECC------CCCEEEEEeCCCEEEEEECCCCc-eEEEEecCCCcEEEEEEeCCC-------------CEE
Confidence 3567888898864 23667777777789999998854 455666789999999998753 566
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL 216 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~ 216 (627)
++.. .+++|++||+++++.+.++. +...|.+++|++ +.|+++.
T Consensus 71 ~~~~----------------------------------~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 116 (814)
T 3mkq_A 71 IVGS----------------------------------DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116 (814)
T ss_dssp EEEE----------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEe----------------------------------CCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEc
Confidence 5432 13679999999999999998 566999999997 5777776
Q ss_pred -CCeEEEEeCCCC-ceeEEEEcCCCCCCCCCCCcCcccccceeeEcC---ceEEEcCCCCCcCCCCccCCCCCCCCCCCC
Q 046828 217 -AAQIYCFDALTL-ESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP---RWLAYASNNPLLPNTGRLSPQSLTPPSVSP 291 (627)
Q Consensus 217 -~~~I~i~D~~t~-e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~---r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~ 291 (627)
++.|++||+.+. +....+.+|..+ +..++++| ++|+
T Consensus 117 ~dg~i~vw~~~~~~~~~~~~~~~~~~-------------v~~~~~~p~~~~~l~-------------------------- 157 (814)
T 3mkq_A 117 DDLTVKLWNWENNWALEQTFEGHEHF-------------VMCVAFNPKDPSTFA-------------------------- 157 (814)
T ss_dssp TTSEEEEEEGGGTSEEEEEEECCSSC-------------EEEEEEETTEEEEEE--------------------------
T ss_pred CCCEEEEEECCCCceEEEEEcCCCCc-------------EEEEEEEcCCCCEEE--------------------------
Confidence 458999999987 455566665443 22233322 1111
Q ss_pred CCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEE
Q 046828 292 STSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKD 371 (627)
Q Consensus 292 ~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD 371 (627)
.+..+|.|++||
T Consensus 158 --------------------------------------------------------------------~~~~dg~v~vwd 169 (814)
T 3mkq_A 158 --------------------------------------------------------------------SGCLDRTVKVWS 169 (814)
T ss_dssp --------------------------------------------------------------------EEETTSEEEEEE
T ss_pred --------------------------------------------------------------------EEeCCCeEEEEE
Confidence 134689999999
Q ss_pred CCCCeEEEEeccCC-CCeEEEEECC--CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCC
Q 046828 372 IVSRSVISQFRAHT-SPISALCFDR--SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMT 448 (627)
Q Consensus 372 ~~s~~~l~~~~aH~-~~Is~laFsp--dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t 448 (627)
+.+++....+..|. .+|.+++|+| +|.+|++++.+|+ |++||+. ++ ..+..+ +++.
T Consensus 170 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~~~d~~-------~~------------~~~~~~-~~~~ 228 (814)
T 3mkq_A 170 LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQ-------TK------------SCVATL-EGHM 228 (814)
T ss_dssp TTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE-EEEEETT-------TT------------EEEEEE-ECCS
T ss_pred CCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE-EEEEECC-------CC------------cEEEEE-cCCC
Confidence 99888777777655 8999999999 9999999999997 8999985 23 234444 5554
Q ss_pred cCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccc
Q 046828 449 SAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQN 491 (627)
Q Consensus 449 ~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~ 491 (627)
..|.+++|+||+++|++++.||+|++|++........+..|.
T Consensus 229 -~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~ 270 (814)
T 3mkq_A 229 -SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270 (814)
T ss_dssp -SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS
T ss_pred -CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC
Confidence 359999999999999999999999999998765555555553
No 78
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.85 E-value=8.8e-20 Score=193.80 Aligned_cols=233 Identities=15% Similarity=0.149 Sum_probs=166.9
Q ss_pred EeccCcEEEEecCCCCCc---eEEeeecCCceEEEEEee-CCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcc
Q 046828 86 LGYSNGFQVLDVEDATNV---SELVSRRDDPVTFLQMQP-LPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDG 161 (627)
Q Consensus 86 ~Gy~~G~qVWdv~~~~~~---~ells~~dG~V~~v~~lp-~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~ 161 (627)
.+.++.++|||++..+.. ...+..|.++|..+.+.| .. .+|+...
T Consensus 53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~-------------~~l~s~s------------------ 101 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND-------------NVIASGS------------------ 101 (402)
T ss_dssp CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT-------------TEEEEEE------------------
T ss_pred EcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC-------------CEEEEEe------------------
Confidence 355778999999775422 234567899999999876 32 4665432
Q ss_pred cccCCCCCCCCCCCCcCCcEEEEEECCCC-------ceEEEEe-cCCeEEEEEecC---cEEEEEe-CCeEEEEeCCCCc
Q 046828 162 LVRDGYDEPQPGNVAMSPTAVRFYSLRSH-------NYVHVLR-FRSTVYMVRCSP---RIVAVGL-AAQIYCFDALTLE 229 (627)
Q Consensus 162 ~~~~g~~~~~~~~~~~~~~tV~lwdl~t~-------~~V~tL~-f~s~V~sV~~s~---~~LaV~~-~~~I~i~D~~t~e 229 (627)
.+++|+|||+.++ +.+.++. +...|.+|++++ ++|+++. ++.|++||+.+++
T Consensus 102 ----------------~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 165 (402)
T 2aq5_A 102 ----------------EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA 165 (402)
T ss_dssp ----------------TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE
T ss_pred ----------------CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC
Confidence 1378999999998 6788887 556999999996 4777775 5689999999999
Q ss_pred eeEEE--EcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhh
Q 046828 230 SKFSV--LTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVE 307 (627)
Q Consensus 230 ~~~tl--~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~ 307 (627)
.+.++ ..|..+ +. .+++.++...
T Consensus 166 ~~~~~~~~~~~~~-------------v~-------~~~~~~~~~~----------------------------------- 190 (402)
T 2aq5_A 166 AVLTLGPDVHPDT-------------IY-------SVDWSRDGAL----------------------------------- 190 (402)
T ss_dssp EEEEECTTTCCSC-------------EE-------EEEECTTSSC-----------------------------------
T ss_pred ccEEEecCCCCCc-------------eE-------EEEECCCCCE-----------------------------------
Confidence 88887 444432 22 2333332100
Q ss_pred hhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEe-ccCCC
Q 046828 308 SSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQF-RAHTS 386 (627)
Q Consensus 308 ~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~-~aH~~ 386 (627)
+ ..+..||.|+|||+.+++.+..+ ..|..
T Consensus 191 ----l----------------------------------------------~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 220 (402)
T 2aq5_A 191 ----I----------------------------------------------CTSCRDKRVRVIEPRKGTVVAEKDRPHEG 220 (402)
T ss_dssp ----E----------------------------------------------EEEETTSEEEEEETTTTEEEEEEECSSCS
T ss_pred ----E----------------------------------------------EEEecCCcEEEEeCCCCceeeeeccCCCC
Confidence 0 02346899999999999999999 78987
Q ss_pred C-eEEEEECCCCCEEEEE---eCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCC
Q 046828 387 P-ISALCFDRSGTLLVTA---SIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQ 462 (627)
Q Consensus 387 ~-Is~laFspdG~lLaTa---S~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~ 462 (627)
. +.+++|+|+|++|+++ +.+|+ |+|||+.. +. .......+ .+ ...|.+++|+||++
T Consensus 221 ~~~~~~~~~~~~~~l~~g~~~~~d~~-i~iwd~~~-------~~---------~~~~~~~~--~~-~~~v~~~~~s~~~~ 280 (402)
T 2aq5_A 221 TRPVHAVFVSEGKILTTGFSRMSERQ-VALWDTKH-------LE---------EPLSLQEL--DT-SSGVLLPFFDPDTN 280 (402)
T ss_dssp SSCCEEEECSTTEEEEEEECTTCCEE-EEEEETTB-------CS---------SCSEEEEC--CC-CSSCEEEEEETTTT
T ss_pred CcceEEEEcCCCcEEEEeccCCCCce-EEEEcCcc-------cc---------CCceEEec--cC-CCceeEEEEcCCCC
Confidence 6 9999999999999999 78887 89999861 11 00122222 22 23589999999999
Q ss_pred EEEEE-eCCCeEEEEEcCCCCC-eeecccc
Q 046828 463 WIAIV-SSRGTCHIFVLTPFGG-ETVLQIQ 490 (627)
Q Consensus 463 ~Las~-S~dgTvhIw~i~~~gg-~~~~~~h 490 (627)
+|+++ +.||+|+||++..... ...+..|
T Consensus 281 ~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~ 310 (402)
T 2aq5_A 281 IVYLCGKGDSSIRYFEITSEAPFLHYLSMF 310 (402)
T ss_dssp EEEEEETTCSCEEEEEECSSTTCEEEEEEE
T ss_pred EEEEEEcCCCeEEEEEecCCCcceEeeccc
Confidence 99755 4799999999987553 3344444
No 79
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.9e-20 Score=209.56 Aligned_cols=233 Identities=12% Similarity=0.028 Sum_probs=158.7
Q ss_pred EEEEeccCcEEEEecCCCCCce---EEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 83 VLLLGYSNGFQVLDVEDATNVS---ELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 83 vl~~Gy~~G~qVWdv~~~~~~~---ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
+...++++.++|||++...... ..+..|.+.|..+++.|... +.....+||.++
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~-------~~~~~~~LAs~s---------------- 232 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCH-------APHLVGCLSFVS---------------- 232 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCC-------CSSSSCEEEEEE----------------
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCC-------CCCCCceEEEEe----------------
Confidence 4445677889999998754221 22455678899999987631 111125666433
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCce-----------EEEEec-CCeEEEEEecC-cEEEEEe-CCeEEEEeC
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNY-----------VHVLRF-RSTVYMVRCSP-RIVAVGL-AAQIYCFDA 225 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~-----------V~tL~f-~s~V~sV~~s~-~~LaV~~-~~~I~i~D~ 225 (627)
.+++|+|||+.+++. +.++.. ...|.+|+|++ ..|++|. +++|++||+
T Consensus 233 ------------------~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~ 294 (524)
T 2j04_B 233 ------------------QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDL 294 (524)
T ss_dssp ------------------TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred ------------------cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEEC
Confidence 136799999987642 245653 45999999976 6777775 568999999
Q ss_pred CCCce-eEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchh
Q 046828 226 LTLES-KFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARY 304 (627)
Q Consensus 226 ~t~e~-~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~ 304 (627)
.+++. ..++.+|..+ +..+++ ++.++.. .+
T Consensus 295 ~~~~~~~~~~~~H~~~-------------V~sv~~-----~~s~~g~---------------------------~~---- 325 (524)
T 2j04_B 295 TDPEVPSFYDQVHDSY-------------ILSVST-----AYSDFED---------------------------TV---- 325 (524)
T ss_dssp TBCSSCSEEEECSSSC-------------EEEEEE-----ECCTTSC---------------------------CE----
T ss_pred CCCCCceEEeeccccc-------------EEEEEE-----EcCCCCC---------------------------eE----
Confidence 98754 3456666543 222210 2221100 00
Q ss_pred hhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccC
Q 046828 305 AVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAH 384 (627)
Q Consensus 305 a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH 384 (627)
+ ++++.||+|+|||+.+++.+..+.+|
T Consensus 326 -------------------------------------------------l----aS~S~D~tvklWD~~~~~~~~~~~~~ 352 (524)
T 2j04_B 326 -------------------------------------------------V----STVAVDGYFYIFNPKDIATTKTTVSR 352 (524)
T ss_dssp -------------------------------------------------E----EEEETTSEEEEECGGGHHHHCEEEEE
T ss_pred -------------------------------------------------E----EEeccCCeEEEEECCCCCcccccccc
Confidence 0 13457999999999998877777777
Q ss_pred CC--CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCC
Q 046828 385 TS--PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQ 462 (627)
Q Consensus 385 ~~--~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~ 462 (627)
.. .|.+|+|+|+|..||+++.|++ |+|||+. ++. .+..+ .||+ ..|.+|+||||++
T Consensus 353 ~~~~~v~~v~fsp~~~~l~s~~~d~t-v~lwd~~-------~~~------------~~~~l-~gH~-~~V~sva~Sp~g~ 410 (524)
T 2j04_B 353 FRGSNLVPVVYCPQIYSYIYSDGASS-LRAVPSR-------AAF------------AVHPL-VSRE-TTITAIGVSRLHP 410 (524)
T ss_dssp CSCCSCCCEEEETTTTEEEEECSSSE-EEEEETT-------CTT------------CCEEE-EECS-SCEEEEECCSSCC
T ss_pred cccCcccceEeCCCcCeEEEeCCCCc-EEEEECc-------ccc------------cceee-ecCC-CceEEEEeCCCCC
Confidence 64 5889999999999999999987 8999986 221 23334 4665 4699999999999
Q ss_pred EEEEEeCCCeEEEEEcCC
Q 046828 463 WIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 463 ~Las~S~dgTvhIw~i~~ 480 (627)
+||+++.||+|+||++..
T Consensus 411 ~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 411 MVLAGSADGSLIITNAAR 428 (524)
T ss_dssp BCEEEETTTEEECCBSCS
T ss_pred eEEEEECCCEEEEEechH
Confidence 999999999999999753
No 80
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.85 E-value=3.8e-19 Score=196.75 Aligned_cols=252 Identities=14% Similarity=0.101 Sum_probs=184.3
Q ss_pred CCCCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC---CceEEeeecCCc-eEEEEEee--CCCCCCCCC
Q 046828 57 DSHELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT---NVSELVSRRDDP-VTFLQMQP--LPAKSDGQE 130 (627)
Q Consensus 57 ~~~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~---~~~ells~~dG~-V~~v~~lp--~p~~~~~~D 130 (627)
....++..|..+.|... .+.|+.|.++.++|||+++.. +....+..|.+. |.++.+.| ..
T Consensus 13 ~~~~~~~~v~~~~~spd-------g~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~------- 78 (615)
T 1pgu_A 13 QPSTQRNFTTHLSYDPT-------TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS------- 78 (615)
T ss_dssp CCCCCTTCCCCCEEETT-------TTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTC-------
T ss_pred CCCCccCceeEEEECCC-------CCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCC-------
Confidence 34556788888888742 335555668899999999751 345566678888 99999987 43
Q ss_pred CcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCC--------ceEEEEe-cCCe
Q 046828 131 GFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSH--------NYVHVLR-FRST 201 (627)
Q Consensus 131 ~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~--------~~V~tL~-f~s~ 201 (627)
.+|++.. .+++|++||+.++ +.+.++. +...
T Consensus 79 ------~~l~s~~----------------------------------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (615)
T 1pgu_A 79 ------QYLCSGD----------------------------------ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGP 118 (615)
T ss_dssp ------CEEEEEE----------------------------------TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSC
T ss_pred ------CEEEEec----------------------------------CCCEEEEEeCCCCcccccccccccchhhccccc
Confidence 4565432 1367999999865 6677777 5669
Q ss_pred EEEEEecC--cEEEEEeCC-----eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcC
Q 046828 202 VYMVRCSP--RIVAVGLAA-----QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLP 274 (627)
Q Consensus 202 V~sV~~s~--~~LaV~~~~-----~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~ 274 (627)
|.+++|++ ++|+++..+ .|++|| +++.+..+.+|..+ +.. +++.++...
T Consensus 119 v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~-------------v~~-------~~~~~~~~~-- 174 (615)
T 1pgu_A 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQR-------------INA-------CHLKQSRPM-- 174 (615)
T ss_dssp EEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSC-------------EEE-------EEECSSSSC--
T ss_pred EEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCcc-------------EEE-------EEECCCCCc--
Confidence 99999997 677777654 688888 56666666655432 222 333332100
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcc
Q 046828 275 NTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRN 354 (627)
Q Consensus 275 ~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~ 354 (627)
. +
T Consensus 175 -------------------------~-----------------------------------------------------l 176 (615)
T 1pgu_A 175 -------------------------R-----------------------------------------------------S 176 (615)
T ss_dssp -------------------------E-----------------------------------------------------E
T ss_pred -------------------------E-----------------------------------------------------E
Confidence 0 0
Q ss_pred cccccCCCCCCeEEEEECCCCeEEEEeccCCC---CeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccc
Q 046828 355 ASHSSDTDIAGMVVVKDIVSRSVISQFRAHTS---PISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQT 430 (627)
Q Consensus 355 ~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~---~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~ 430 (627)
..+..||.|+|||+.+++.+..+..|.. +|.+++|+|+ |++|++++.+|+ |+|||+. ++
T Consensus 177 ----~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~-------~~----- 239 (615)
T 1pgu_A 177 ----MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGK-------SG----- 239 (615)
T ss_dssp ----EEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETT-------TC-----
T ss_pred ----EEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECC-------CC-----
Confidence 0234689999999999999999999999 9999999999 999999999998 7999985 33
Q ss_pred cCCCCceeEEEEEee---cCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccc
Q 046828 431 YDWTSSHVHLYKLHR---GMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 431 ~~~~~~~~~l~~l~r---G~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h 490 (627)
..+..+.. ++. ..|.+++|+ |+++|++++.||+|++|++........+..|
T Consensus 240 -------~~~~~~~~~~~~~~-~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 240 -------EFLKYIEDDQEPVQ-GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp -------CEEEECCBTTBCCC-SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred -------CEeEEecccccccC-CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 24555534 554 469999999 9999999999999999999865444444433
No 81
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.85 E-value=7.1e-21 Score=198.95 Aligned_cols=239 Identities=15% Similarity=0.108 Sum_probs=155.5
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
++.|..+.|.. +.+.+++.+.++.++|||+.... .....+..|.+.|..+.+.|.. .+|+
T Consensus 11 ~~~v~~~~~s~------~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-------------~~l~ 71 (377)
T 3dwl_C 11 PKPSYEHAFNS------QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-------------NRIV 71 (377)
T ss_dssp SSCCSCCEECS------SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-------------CCEE
T ss_pred CCcEEEEEECC------CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-------------CEEE
Confidence 45666677753 23556666688899999999753 3445566788999999987653 4555
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc---eEEEEe-cCCeEEEEEecC--cEEEE
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN---YVHVLR-FRSTVYMVRCSP--RIVAV 214 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~---~V~tL~-f~s~V~sV~~s~--~~LaV 214 (627)
... .+++|++||+++++ .+..+. +...|.++++++ ++|++
T Consensus 72 s~s----------------------------------~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 117 (377)
T 3dwl_C 72 TCS----------------------------------QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAV 117 (377)
T ss_dssp EEE----------------------------------TTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEE
T ss_pred EEe----------------------------------CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEE
Confidence 432 12569999999988 455554 567999999986 56776
Q ss_pred Ee-CCeEEEEeCCCCce---eEEEEc-CCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTLES---KFSVLT-YPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPP 287 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~---~~tl~~-~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~ 287 (627)
+. ++.|++||+.+.+. ...+.. |..+ +..+++.| ++||+
T Consensus 118 ~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~-------------v~~~~~~~~~~~l~~--------------------- 163 (377)
T 3dwl_C 118 GSGARVISVCYFEQENDWWVSKHLKRPLRST-------------ILSLDWHPNNVLLAA--------------------- 163 (377)
T ss_dssp EESSSCEEECCC-----CCCCEEECSSCCSC-------------EEEEEECTTSSEEEE---------------------
T ss_pred EecCCeEEEEEECCcccceeeeEeecccCCC-------------eEEEEEcCCCCEEEE---------------------
Confidence 65 56899999998873 555554 4332 22333322 22222
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeE
Q 046828 288 SVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMV 367 (627)
Q Consensus 288 ~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V 367 (627)
+..||.|
T Consensus 164 -------------------------------------------------------------------------~~~d~~i 170 (377)
T 3dwl_C 164 -------------------------------------------------------------------------GCADRKA 170 (377)
T ss_dssp -------------------------------------------------------------------------EESSSCE
T ss_pred -------------------------------------------------------------------------EeCCCEE
Confidence 2356778
Q ss_pred EEEECC------------------CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcc
Q 046828 368 VVKDIV------------------SRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQ 429 (627)
Q Consensus 368 ~IwD~~------------------s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~ 429 (627)
+|||+. .++.+..+ .|..+|.+++|+|+|++||+++.||+ |+|||+. ++..
T Consensus 171 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~~-------~~~~-- 239 (377)
T 3dwl_C 171 YVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYPS-------APEQ-- 239 (377)
T ss_dssp EEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CEEC-------STTS--
T ss_pred EEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEECC-------CCCC--
Confidence 888874 34567777 99999999999999999999999997 8999986 2210
Q ss_pred ccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 430 TYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 430 ~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
....+..+ .++. ..|.+++|+||+++|+++++++.+ +|+...
T Consensus 240 ------~~~~~~~~-~~~~-~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 240 ------PPRALITV-KLSQ-LPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp ------CEEECCCE-ECSS-SCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred ------cceeeEee-cCCC-CceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 00012333 4554 359999999999999999877766 777664
No 82
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.85 E-value=3.9e-19 Score=215.11 Aligned_cols=355 Identities=16% Similarity=0.150 Sum_probs=219.7
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.+.+.|..+.|.. .++.+++++.++.++|||+.+...+ ..+..|.+.|.++.+.|.. .+|
T Consensus 613 ~h~~~v~~~~~s~------~~~~l~s~~~d~~i~vw~~~~~~~~-~~~~~h~~~v~~~~~s~~~-------------~~l 672 (1249)
T 3sfz_A 613 PHTDAVYHACFSQ------DGQRIASCGADKTLQVFKAETGEKL-LDIKAHEDEVLCCAFSSDD-------------SYI 672 (1249)
T ss_dssp CCSSCEEEEEECT------TSSEEEEEETTSCEEEEETTTCCEE-EEECCCSSCEEEEEECTTS-------------SEE
T ss_pred cccccEEEEEECC------CCCEEEEEeCCCeEEEEECCCCCEE-EEeccCCCCEEEEEEecCC-------------CEE
Confidence 4667788888863 2367888888889999999986643 4455788999999987643 566
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEe-cCCeEEEEEecC----cEEEE
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP----RIVAV 214 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~----~~LaV 214 (627)
+..+ .+++|++||+++++.+.++. +...|.+++|++ .++++
T Consensus 673 ~s~~----------------------------------~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 718 (1249)
T 3sfz_A 673 ATCS----------------------------------ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLAT 718 (1249)
T ss_dssp EEEE----------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred EEEe----------------------------------CCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEE
Confidence 5432 13679999999999999998 455999999986 36777
Q ss_pred Ee-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCC--------CC
Q 046828 215 GL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSP--------QS 283 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~--------q~ 283 (627)
+. ++.|++||+.+++.+.++.+|..+ +..++++| ++|+.++.+..+.+|..... ..
T Consensus 719 g~~d~~v~vwd~~~~~~~~~~~~h~~~-------------v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 785 (1249)
T 3sfz_A 719 GSNDFFLKLWDLNQKECRNTMFGHTNS-------------VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 785 (1249)
T ss_dssp EETTSCEEEEETTSSSEEEEECCCSSC-------------EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCC
T ss_pred EeCCCeEEEEECCCcchhheecCCCCC-------------EEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccc
Confidence 65 558999999999999998887654 44566665 78999888777765532110 00
Q ss_pred C-----CC------CCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCC--CCCccCCCccc
Q 046828 284 L-----TP------PSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGS--SSPVSSNSSWK 350 (627)
Q Consensus 284 ~-----t~------~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~--~~~~s~~~~~~ 350 (627)
. .+ ...+...+|.+..++.. . ...+ .++.+.... .+..+... ..+. ...++++
T Consensus 786 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~---~~~v--~~~d~~~~~--~~~~~~~~--~~~~v~~~~~sp~---- 851 (1249)
T 3sfz_A 786 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVA-A---KNKV--LLFDIHTSG--LLAEIHTG--HHSTIQYCDFSPY---- 851 (1249)
T ss_dssp CC--------CCCCCBCCCCBCTTSSEEEEE-E---TTEE--EEEETTTCC--EEEEEECS--SSSCCCEEEECSS----
T ss_pred cccccCCccccccceEEEEEECCCCCEEEEE-c---CCcE--EEEEecCCC--ceeEEcCC--CCCceEEEEEcCC----
Confidence 0 00 00111122222211110 0 0000 000000000 00000000 0000 0011111
Q ss_pred cCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcc-
Q 046828 351 AGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQ- 429 (627)
Q Consensus 351 ~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~- 429 (627)
+.+ ...+..+|.|++||+.+++.+..+.+|..+|.+++|+|+|++|++++.||+ |++||+....... .-....
T Consensus 852 -~~~---l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~-v~vw~~~~~~~~~-~~~~~~~ 925 (1249)
T 3sfz_A 852 -DHL---AVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT-IRVWETKKVCKNS-AIVLKQE 925 (1249)
T ss_dssp -TTE---EEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEHHHHHSCC-SSSEEEE
T ss_pred -CCE---EEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCe-EEEEEccccceee-eecccce
Confidence 111 124568999999999999999999999999999999999999999999998 7999974110000 000000
Q ss_pred -------------ccCCCCceeEEEEEeec----CCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccc
Q 046828 430 -------------TYDWTSSHVHLYKLHRG----MTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNS 492 (627)
Q Consensus 430 -------------~~~~~~~~~~l~~l~rG----~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s 492 (627)
..+.... ..+.....+ .....|.+++|+||++++++++.+|+|++|++........+..|..
T Consensus 926 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~ 1004 (1249)
T 3sfz_A 926 IDVVFQENETMVLAVDNIRG-LQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK 1004 (1249)
T ss_dssp EEEEEETTEEEEEEEESSSS-EEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSS
T ss_pred eeEEEcCCCcEEEEecCCcc-eEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCC
Confidence 0000000 011111000 0124599999999999999999999999999987766666777766
Q ss_pred cccCCCCCCC
Q 046828 493 HVDRPTLSPV 502 (627)
Q Consensus 493 ~v~~~~~~p~ 502 (627)
.+....+.|.
T Consensus 1005 ~v~~l~~s~d 1014 (1249)
T 3sfz_A 1005 AVRHIQFTAD 1014 (1249)
T ss_dssp CCCCEEECSS
T ss_pred ceEEEEECCC
Confidence 5544444443
No 83
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.85 E-value=5.4e-20 Score=198.53 Aligned_cols=261 Identities=11% Similarity=0.098 Sum_probs=163.3
Q ss_pred CCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEE-eeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSEL-VSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~el-ls~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
+.+.|..+.|. +.....|++++.++.++|||++.......+ +..|.++|..|++.|.- + .+|
T Consensus 118 ~~~~V~~l~~~-----P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~-------~-----~~l 180 (435)
T 4e54_B 118 FDRRATSLAWH-----PTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLN-------T-----NQF 180 (435)
T ss_dssp CSSCEEEEEEC-----SSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSC-------T-----TEE
T ss_pred CCCCEEEEEEe-----CCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCC-------C-----CEE
Confidence 44568888884 222245666677888999999876533222 23588999999997641 1 344
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC---CeEEEEEecC--cEEEE
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR---STVYMVRCSP--RIVAV 214 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~---s~V~sV~~s~--~~LaV 214 (627)
+.++ .+++|+|||++++........+ ..+.++++++ ++|++
T Consensus 181 ~s~s----------------------------------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (435)
T 4e54_B 181 YASS----------------------------------MEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVT 226 (435)
T ss_dssp EEEC----------------------------------SSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEE
T ss_pred EEEe----------------------------------CCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEE
Confidence 4321 2367999999876554333332 3578899986 68888
Q ss_pred Ee-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCC
Q 046828 215 GL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPST 293 (627)
Q Consensus 215 ~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~ 293 (627)
+. ++.|++||+.+ +.+.++.+|..+ +.. +++.+....
T Consensus 227 g~~dg~i~~wd~~~-~~~~~~~~h~~~-------------v~~-------v~~~p~~~~--------------------- 264 (435)
T 4e54_B 227 GDNVGNVILLNMDG-KELWNLRMHKKK-------------VTH-------VALNPCCDW--------------------- 264 (435)
T ss_dssp ECSSSBEEEEESSS-CBCCCSBCCSSC-------------EEE-------EEECTTCSS---------------------
T ss_pred EeCCCcEeeeccCc-ceeEEEecccce-------------EEe-------eeecCCCce---------------------
Confidence 75 56899999864 445555555432 222 333321100
Q ss_pred CCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC
Q 046828 294 SPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV 373 (627)
Q Consensus 294 s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~ 373 (627)
+ + +.++.||.|+|||+.
T Consensus 265 ------~-----------------------------------------------------~----~s~s~d~~v~iwd~~ 281 (435)
T 4e54_B 265 ------F-----------------------------------------------------L----ATASVDQTVKIWDLR 281 (435)
T ss_dssp ------E-----------------------------------------------------E----EEEETTSBCCEEETT
T ss_pred ------E-----------------------------------------------------E----EEecCcceeeEEecc
Confidence 0 0 023478999999998
Q ss_pred CCeEEE---EeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCC-------CC--------------CCCCCc-
Q 046828 374 SRSVIS---QFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSS-------KG--------------RSGSAS- 428 (627)
Q Consensus 374 s~~~l~---~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~-------~~--------------~~g~~~- 428 (627)
+.+... ...+|..+|.+|+|+|+|++|+|++.||+ |+|||+..... .. ..+...
T Consensus 282 ~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (435)
T 4e54_B 282 QVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE-IRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIV 360 (435)
T ss_dssp TCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC-EEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEE
T ss_pred cccccceEEEeeeccccccceeECCCCCeeEEEcCCCE-EEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEE
Confidence 865433 34689999999999999999999999998 89999852100 00 000000
Q ss_pred --cccC----------------CCC-ceeEEEEEeecCCcCcEEEE-EEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 429 --QTYD----------------WTS-SHVHLYKLHRGMTSAVIQDI-CFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 429 --~~~~----------------~~~-~~~~l~~l~rG~t~a~I~sI-aFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
...+ |.. ....+..+..++. ..|.++ +|||||++||+++ |++|+||+++.
T Consensus 361 ~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~-~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 361 VGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPES-SGISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp EECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSC-CCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred EEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCC-CcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 0000 000 0012334433443 347776 7999999999876 78999999875
No 84
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.9e-18 Score=171.86 Aligned_cols=214 Identities=12% Similarity=0.084 Sum_probs=155.8
Q ss_pred CCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcC
Q 046828 99 DATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMS 178 (627)
Q Consensus 99 ~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~ 178 (627)
...+....+..|.+.|.++.+ |.. .+|+... .
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~~-------------~~l~s~~----------------------------------~ 37 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VDD-------------SKVASVS----------------------------------R 37 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EET-------------TEEEEEE----------------------------------T
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cCC-------------CEEEEEE----------------------------------c
Confidence 333455667789999999988 542 4555432 1
Q ss_pred CcEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCc---eeEEEEcCCCCCCCCCCCcCcc
Q 046828 179 PTAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLE---SKFSVLTYPVPHFGGQGTSGVN 251 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e---~~~tl~~~p~~~~~~~g~~~~~ 251 (627)
+++|++||+.+++.+..+. +...|.++++++ ++|+++. ++.|++||+.+.+ .+..+..|..+
T Consensus 38 dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~----------- 106 (313)
T 3odt_A 38 DGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGN----------- 106 (313)
T ss_dssp TSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSC-----------
T ss_pred CCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccC-----------
Confidence 3789999999999988887 466999999987 6777775 5589999987653 34444443322
Q ss_pred cccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeee
Q 046828 252 IGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYY 331 (627)
Q Consensus 252 ~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~ 331 (627)
+..+++.++.|+
T Consensus 107 --i~~~~~~~~~l~------------------------------------------------------------------ 118 (313)
T 3odt_A 107 --VCSLSFQDGVVI------------------------------------------------------------------ 118 (313)
T ss_dssp --EEEEEEETTEEE------------------------------------------------------------------
T ss_pred --EEEEEecCCEEE------------------------------------------------------------------
Confidence 122222222222
Q ss_pred ccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEE
Q 046828 332 QDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDR-SGTLLVTASIHGNNI 410 (627)
Q Consensus 332 ~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I 410 (627)
.+..+|.|++|| .++.+..+..|..+|.+++|.| ++.+|++++.+|+ |
T Consensus 119 ----------------------------~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i 167 (313)
T 3odt_A 119 ----------------------------SGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKT-I 167 (313)
T ss_dssp ----------------------------EEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSC-E
T ss_pred ----------------------------EEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCC-E
Confidence 234689999999 6788899999999999999998 9999999999998 7
Q ss_pred EEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccc
Q 046828 411 NIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 411 ~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h 490 (627)
++||.. ..+..+ .+.....|.+++|+|+++ |++++.||+|+||++........+..|
T Consensus 168 ~i~d~~---------------------~~~~~~-~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~ 224 (313)
T 3odt_A 168 KLWQND---------------------KVIKTF-SGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH 224 (313)
T ss_dssp EEEETT---------------------EEEEEE-CSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEecC---------------------ceEEEE-eccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC
Confidence 999953 133333 443445699999999999 999999999999999876555556556
Q ss_pred ccc
Q 046828 491 NSH 493 (627)
Q Consensus 491 ~s~ 493 (627)
...
T Consensus 225 ~~~ 227 (313)
T 3odt_A 225 ESF 227 (313)
T ss_dssp SSC
T ss_pred Cce
Confidence 543
No 85
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.85 E-value=5.6e-19 Score=181.46 Aligned_cols=258 Identities=11% Similarity=0.112 Sum_probs=173.1
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEec----cCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGY----SNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNS 135 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy----~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~ 135 (627)
.+.+.|..+.|.. ....+++.|. ++.++|||++...........|.++|.++.+.|... .
T Consensus 16 ~h~~~v~~~~~~p------~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~ 79 (357)
T 3i2n_A 16 GFNYTVFDCKWVP------CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSL----------Q 79 (357)
T ss_dssp ECSSCEEEEEECT------TSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCT----------T
T ss_pred CCCCceEEEEEcC------CCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCC----------C
Confidence 3677888899863 1256766664 678999999986533333446888999988876520 0
Q ss_pred CCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc-eEEEEe-cCCeEEEEEe------
Q 046828 136 HPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN-YVHVLR-FRSTVYMVRC------ 207 (627)
Q Consensus 136 rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~-~V~tL~-f~s~V~sV~~------ 207 (627)
..+|++.. .+++|++||+++++ .+.++. +...|.++.+
T Consensus 80 ~~~l~~~~----------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 125 (357)
T 3i2n_A 80 QRYLATGD----------------------------------FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGI 125 (357)
T ss_dssp TCCEEEEE----------------------------------TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGC
T ss_pred CceEEEec----------------------------------CCCeEEEEeCCCCCccEEEEEecccceEEEeecccccc
Confidence 14555432 12569999999998 888887 5568999965
Q ss_pred cC--cEEEEEe-CCeEEEEeCCCCc-eeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCC
Q 046828 208 SP--RIVAVGL-AAQIYCFDALTLE-SKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQS 283 (627)
Q Consensus 208 s~--~~LaV~~-~~~I~i~D~~t~e-~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~ 283 (627)
++ +.|+++. ++.|++||+.+.+ .+..+..+.... . ..+..+++++ ++.++.
T Consensus 126 s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-------~--~~v~~~~~~~---~~~~~~------------- 180 (357)
T 3i2n_A 126 GEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN-------K--RDCWTVAFGN---AYNQEE------------- 180 (357)
T ss_dssp C-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC-------C--CCEEEEEEEC---CCC-CC-------------
T ss_pred CCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC-------C--CceEEEEEEe---ccCCCC-------------
Confidence 43 5777775 5589999999987 556664432210 0 0011111100 011100
Q ss_pred CCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCC
Q 046828 284 LTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDI 363 (627)
Q Consensus 284 ~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~ 363 (627)
.. + ..+..
T Consensus 181 ---------------~~-----------------------------------------------------l----~~~~~ 188 (357)
T 3i2n_A 181 ---------------RV-----------------------------------------------------V----CAGYD 188 (357)
T ss_dssp ---------------CE-----------------------------------------------------E----EEEET
T ss_pred ---------------CE-----------------------------------------------------E----EEEcc
Confidence 00 0 12346
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECC---CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDR---SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFsp---dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
+|.|++||+.+++.+ ....|..+|.+++|+| +|.+|++++.+|+ |+|||+.. +.. . .....
T Consensus 189 d~~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~-------~~~------~-~~~~~ 252 (357)
T 3i2n_A 189 NGDIKLFDLRNMALR-WETNIKNGVCSLEFDRKDISMNKLVATSLEGK-FHVFDMRT-------QHP------T-KGFAS 252 (357)
T ss_dssp TSEEEEEETTTTEEE-EEEECSSCEEEEEESCSSSSCCEEEEEESTTE-EEEEEEEE-------EET------T-TEEEE
T ss_pred CCeEEEEECccCcee-eecCCCCceEEEEcCCCCCCCCEEEEECCCCe-EEEEeCcC-------CCc------c-cceee
Confidence 899999999998864 4567899999999999 9999999999997 89999851 110 0 00011
Q ss_pred EEEeecCCcCcEEEEEEccCCC-EEEEEeCCCeEEEEEcCCCC
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQ-WIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~-~Las~S~dgTvhIw~i~~~g 482 (627)
. ...++. ..|.+++|+||++ +|++++.||+|+||++....
T Consensus 253 ~-~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 253 V-SEKAHK-STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp E-EEECCS-SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred e-ccCCCc-CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 1 223554 4599999999999 89999999999999998643
No 86
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.85 E-value=4.8e-19 Score=183.34 Aligned_cols=255 Identities=16% Similarity=0.152 Sum_probs=167.4
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEE-eeecCCceEEEEEeeCCCCCCCCCCcCCCCCE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSEL-VSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPL 138 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~el-ls~~dG~V~~v~~lp~p~~~~~~D~f~~~rpL 138 (627)
.+.+.|..+.|.. ..+.+++.+.++.++|||++.......+ +..|.+.|..+.+.|.. .+
T Consensus 50 ~h~~~v~~~~~~~------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~ 110 (372)
T 1k8k_C 50 EHNGQVTGVDWAP------DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE-------------KK 110 (372)
T ss_dssp CCSSCEEEEEEET------TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS-------------SE
T ss_pred CCCCcccEEEEeC------CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCC-------------CE
Confidence 4567788888864 2367788888889999999875422222 24577888888887642 46
Q ss_pred EEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCce---EEEEe--cCCeEEEEEecC--cE
Q 046828 139 LLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNY---VHVLR--FRSTVYMVRCSP--RI 211 (627)
Q Consensus 139 lavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~---V~tL~--f~s~V~sV~~s~--~~ 211 (627)
|++.. .++.|++||+++++. ...+. +...|.++++++ ++
T Consensus 111 l~~~~----------------------------------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (372)
T 1k8k_C 111 FAVGS----------------------------------GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 156 (372)
T ss_dssp EEEEE----------------------------------TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred EEEEe----------------------------------CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence 65432 125599999998874 33443 356899999987 67
Q ss_pred EEEEe-CCeEEEEeCCCCc------------------eeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCC
Q 046828 212 VAVGL-AAQIYCFDALTLE------------------SKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPL 272 (627)
Q Consensus 212 LaV~~-~~~I~i~D~~t~e------------------~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~ 272 (627)
|+++. ++.|++||+...+ .+..+..|..+ +. -+++.+
T Consensus 157 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------v~-------~~~~~~---- 212 (372)
T 1k8k_C 157 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW-------------VH-------GVCFSA---- 212 (372)
T ss_dssp EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC-------------EE-------EEEECS----
T ss_pred EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe-------------EE-------EEEECC----
Confidence 77775 5689999976432 22222111110 00 111111
Q ss_pred cCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccC
Q 046828 273 LPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAG 352 (627)
Q Consensus 273 v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g 352 (627)
++.
T Consensus 213 ----------------------------------------------------------------~~~------------- 215 (372)
T 1k8k_C 213 ----------------------------------------------------------------NGS------------- 215 (372)
T ss_dssp ----------------------------------------------------------------SSS-------------
T ss_pred ----------------------------------------------------------------CCC-------------
Confidence 000
Q ss_pred cccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCc--cc
Q 046828 353 RNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSAS--QT 430 (627)
Q Consensus 353 ~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~--~~ 430 (627)
.+ ..+..||.|++||+.+++.+..+..|..+|.+++|+|+|++|+++ .||+ |+||++... .|... ..
T Consensus 216 ~l----~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~-i~i~~~~~~-----~~~~~~~~~ 284 (372)
T 1k8k_C 216 RV----AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCF-PVLFTYDSA-----AGKLSFGGR 284 (372)
T ss_dssp EE----EEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSS-CEEEEEETT-----TTEEEECCC
T ss_pred EE----EEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCe-EEEEEccCc-----CceEEEeec
Confidence 01 124578999999999999999999999999999999999999988 7887 799998620 01000 00
Q ss_pred cCC------------------CCceeEE------EEEeecCCcCcEEEEEEc-cCC---CEEEEEeCCCeEEEEEcCC
Q 046828 431 YDW------------------TSSHVHL------YKLHRGMTSAVIQDICFS-HYS---QWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 431 ~~~------------------~~~~~~l------~~l~rG~t~a~I~sIaFS-pDg---~~Las~S~dgTvhIw~i~~ 480 (627)
.+. ....... ..+..||.. .|.+++|. +|| ++|++++.||+|+||++..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 285 LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN-SVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CCCC--------CHHHHHHHCCCCC---------CCCSSSSSS-CEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cCccccchhhhcchhhhhhhcccccccccCccccccccccccC-CcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 000 0000011 334457654 59999966 677 9999999999999999865
No 87
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.84 E-value=4.3e-19 Score=181.69 Aligned_cols=181 Identities=15% Similarity=0.229 Sum_probs=129.3
Q ss_pred CcEEEEEECCC--CceEEEEe-cCCeEEEEEecC----cEEEEEe-CCeEEEEeCCCCc--eeEEEEcCCCCCCCCCCCc
Q 046828 179 PTAVRFYSLRS--HNYVHVLR-FRSTVYMVRCSP----RIVAVGL-AAQIYCFDALTLE--SKFSVLTYPVPHFGGQGTS 248 (627)
Q Consensus 179 ~~tV~lwdl~t--~~~V~tL~-f~s~V~sV~~s~----~~LaV~~-~~~I~i~D~~t~e--~~~tl~~~p~~~~~~~g~~ 248 (627)
+++|+|||+.+ ++.+.+|+ +..+|++|+|++ ++|+++. +++|+|||+.+++ .+.++..|..+
T Consensus 30 D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~-------- 101 (297)
T 2pm7_B 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSAS-------- 101 (297)
T ss_dssp TSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSC--------
T ss_pred CCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCc--------
Confidence 36799999974 46788888 456999999973 6788776 5689999998874 34445444332
Q ss_pred CcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEe
Q 046828 249 GVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLS 328 (627)
Q Consensus 249 ~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s 328 (627)
+.. +++.++.. +.+
T Consensus 102 -----v~~-------v~~~p~~~--------------------------g~~---------------------------- 115 (297)
T 2pm7_B 102 -----VNS-------VQWAPHEY--------------------------GPM---------------------------- 115 (297)
T ss_dssp -----EEE-------EEECCGGG--------------------------CSE----------------------------
T ss_pred -----eeE-------EEeCcCCC--------------------------CcE----------------------------
Confidence 222 33332100 000
Q ss_pred eeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe--EEEEeccCCCCeEEEEECCC----------
Q 046828 329 RYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS--VISQFRAHTSPISALCFDRS---------- 396 (627)
Q Consensus 329 ~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~--~l~~~~aH~~~Is~laFspd---------- 396 (627)
+ +.++.||.|+|||+.+.. ....+.+|...|.+++|+|+
T Consensus 116 -------------------------l----~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 166 (297)
T 2pm7_B 116 -------------------------L----LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (297)
T ss_dssp -------------------------E----EEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---------
T ss_pred -------------------------E----EEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCC
Confidence 0 123578999999998763 24678899999999999997
Q ss_pred ---CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCC---CEEEEEeCC
Q 046828 397 ---GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYS---QWIAIVSSR 470 (627)
Q Consensus 397 ---G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg---~~Las~S~d 470 (627)
+++||+|+.||+ |+|||+.. +. .....+..+ +||+. .|.+|+|+||+ ++||+++.|
T Consensus 167 ~~~~~~l~sgs~D~~-v~lwd~~~-------~~--------~~~~~~~~l-~~H~~-~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 167 TKESRKFVTGGADNL-VKIWKYNS-------DA--------QTYVLESTL-EGHSD-WVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp ---CCEEEEEETTSC-EEEEEEET-------TT--------TEEEEEEEE-CCCSS-CEEEEEECCCCSSSEEEEEEETT
T ss_pred CCCcceEEEEcCCCc-EEEEEEcC-------CC--------ceEEEEEEe-cCCCC-ceEEEEECCCCCCceEEEEEECC
Confidence 579999999998 89999851 11 000123333 67754 59999999995 899999999
Q ss_pred CeEEEEEcCC
Q 046828 471 GTCHIFVLTP 480 (627)
Q Consensus 471 gTvhIw~i~~ 480 (627)
++|+||+++.
T Consensus 229 ~~v~iWd~~~ 238 (297)
T 2pm7_B 229 RTCIIWTQDN 238 (297)
T ss_dssp SCEEEEEESS
T ss_pred CcEEEEEeCC
Confidence 9999999865
No 88
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.84 E-value=1.4e-19 Score=187.09 Aligned_cols=208 Identities=13% Similarity=0.144 Sum_probs=143.3
Q ss_pred eEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEE
Q 046828 104 SELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVR 183 (627)
Q Consensus 104 ~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~ 183 (627)
+.++..|.++|..+++.|.. .+||..+ .+++|+
T Consensus 6 ~~~~~~H~~~V~~v~~s~~g-------------~~lasgs----------------------------------~D~~v~ 38 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDYYG-------------TRLATCS----------------------------------SDRSVK 38 (316)
T ss_dssp --------CCEEEEEECGGG-------------CEEEEEE----------------------------------TTTEEE
T ss_pred eeecccccCeEEEeeEcCCC-------------CEEEEEe----------------------------------CCCeEE
Confidence 45566799999999997643 4555432 247899
Q ss_pred EEECCCCc--eEEEEe-cCCeEEEEEecC----cEEEEEe-CCeEEEEeCCCCc--eeEEEEcCCCCCCCCCCCcCcccc
Q 046828 184 FYSLRSHN--YVHVLR-FRSTVYMVRCSP----RIVAVGL-AAQIYCFDALTLE--SKFSVLTYPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 184 lwdl~t~~--~V~tL~-f~s~V~sV~~s~----~~LaV~~-~~~I~i~D~~t~e--~~~tl~~~p~~~~~~~g~~~~~~~ 253 (627)
|||+++++ .+.+++ +..+|++|+|++ ++|+++. +++|+|||+.+++ ..+++.+|..+
T Consensus 39 lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~------------- 105 (316)
T 3bg1_A 39 IFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSS------------- 105 (316)
T ss_dssp EEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSC-------------
T ss_pred EEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCc-------------
Confidence 99999875 467777 456999999963 6777775 5689999999874 45555555432
Q ss_pred cceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecc
Q 046828 254 YGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQD 333 (627)
Q Consensus 254 ~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~ 333 (627)
+. -+++.++.. +.+
T Consensus 106 V~-------~v~~~p~~~--------------------------g~~--------------------------------- 119 (316)
T 3bg1_A 106 VN-------SVCWAPHDY--------------------------GLI--------------------------------- 119 (316)
T ss_dssp CC-------EEEECCTTT--------------------------CSC---------------------------------
T ss_pred eE-------EEEECCCCC--------------------------CcE---------------------------------
Confidence 22 233433210 000
Q ss_pred ccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeE---EEEeccCCCCeEEEEECCC--------------
Q 046828 334 FIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSV---ISQFRAHTSPISALCFDRS-------------- 396 (627)
Q Consensus 334 ~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~---l~~~~aH~~~Is~laFspd-------------- 396 (627)
+ +.++.||.|+|||+..... ...+.+|..+|.+++|+|+
T Consensus 120 --------------------l----asgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~ 175 (316)
T 3bg1_A 120 --------------------L----ACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQK 175 (316)
T ss_dssp --------------------E----EEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCC
T ss_pred --------------------E----EEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccC
Confidence 0 1345789999999987632 4567799999999999998
Q ss_pred ---CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCC----CEEEEEeC
Q 046828 397 ---GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYS----QWIAIVSS 469 (627)
Q Consensus 397 ---G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg----~~Las~S~ 469 (627)
+++||+++.||+ |+|||+... +. .......+||+. .|.+++|+||+ ++||+++.
T Consensus 176 ~~~~~~l~sgs~D~~-v~lWd~~~~------~~-----------~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~ 236 (316)
T 3bg1_A 176 PNYIKRFASGGCDNL-IKLWKEEED------GQ-----------WKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQ 236 (316)
T ss_dssp CCCCCBEECCBTTSB-CCEEEECTT------SC-----------EEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEET
T ss_pred ccccceEEEecCCCe-EEEEEeCCC------Cc-----------cceeeecccCCC-ceEEEEecCCCCCCCceEEEEcC
Confidence 579999999998 799998511 10 122233367754 59999999997 89999999
Q ss_pred CCeEEEEEcCC
Q 046828 470 RGTCHIFVLTP 480 (627)
Q Consensus 470 dgTvhIw~i~~ 480 (627)
||+|+||++..
T Consensus 237 D~~v~iw~~~~ 247 (316)
T 3bg1_A 237 DGRVFIWTCDD 247 (316)
T ss_dssp TCEEEEEECSS
T ss_pred CCeEEEEEccC
Confidence 99999999976
No 89
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.84 E-value=7.2e-19 Score=189.62 Aligned_cols=240 Identities=13% Similarity=0.168 Sum_probs=160.6
Q ss_pred eEEEEeccCcEEEEecCCC---------CCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC-EEEEEEccCccCCc
Q 046828 82 HVLLLGYSNGFQVLDVEDA---------TNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP-LLLVVACDEAKNSG 151 (627)
Q Consensus 82 ~vl~~Gy~~G~qVWdv~~~---------~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp-Llavv~~d~~~~~g 151 (627)
.+++.+.++.++|||+... ......+..|.+.|..+.+.|.. + +|+...
T Consensus 143 ~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-------------~~~l~s~~-------- 201 (430)
T 2xyi_A 143 VIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNL-------------NGYLLSAS-------- 201 (430)
T ss_dssp EEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTS-------------TTEEEEEC--------
T ss_pred EEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCC-------------CCeEEEEe--------
Confidence 3444455667999999862 22344556678888888887642 3 554321
Q ss_pred ceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCce-------EEEEe-cCCeEEEEEecC---cEEEEEe-CCe
Q 046828 152 LVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNY-------VHVLR-FRSTVYMVRCSP---RIVAVGL-AAQ 219 (627)
Q Consensus 152 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~-------V~tL~-f~s~V~sV~~s~---~~LaV~~-~~~ 219 (627)
.+++|++||++++.. ...+. +...|.+|++++ .+|+++. ++.
T Consensus 202 --------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~ 255 (430)
T 2xyi_A 202 --------------------------DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255 (430)
T ss_dssp --------------------------TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred --------------------------CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe
Confidence 136799999998432 34453 456899999986 5777775 668
Q ss_pred EEEEeCCCC---ceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCC
Q 046828 220 IYCFDALTL---ESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPS 296 (627)
Q Consensus 220 I~i~D~~t~---e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s 296 (627)
|++||+.+. +.+..+..|..+ + +-|++.+....
T Consensus 256 i~i~d~~~~~~~~~~~~~~~~~~~-------------v-------~~i~~~p~~~~------------------------ 291 (430)
T 2xyi_A 256 LMIWDTRNNNTSKPSHTVDAHTAE-------------V-------NCLSFNPYSEF------------------------ 291 (430)
T ss_dssp EEEEETTCSCSSSCSEEEECCSSC-------------E-------EEEEECSSCTT------------------------
T ss_pred EEEEECCCCCCCcceeEeecCCCC-------------e-------EEEEeCCCCCC------------------------
Confidence 999999987 455566554332 2 22333332100
Q ss_pred CCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCC-C
Q 046828 297 NGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVS-R 375 (627)
Q Consensus 297 ~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s-~ 375 (627)
+ + +.++.+|.|+|||+.+ .
T Consensus 292 ---------------~-----------------------------------------l----~tg~~dg~v~vwd~~~~~ 311 (430)
T 2xyi_A 292 ---------------I-----------------------------------------L----ATGSADKTVALWDLRNLK 311 (430)
T ss_dssp ---------------E-----------------------------------------E----EEEETTSEEEEEETTCTT
T ss_pred ---------------E-----------------------------------------E----EEEeCCCeEEEEeCCCCC
Confidence 0 0 0235789999999998 5
Q ss_pred eEEEEeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEE
Q 046828 376 SVISQFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQD 454 (627)
Q Consensus 376 ~~l~~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~s 454 (627)
+.+..+..|..+|.+|+|+|+| .+|++++.||+ |+|||+...... .......+. ....+.. ..|+. ..|.+
T Consensus 312 ~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~~~~~~---~~~~~~~~~--~~~~~~~-~~~h~-~~v~~ 383 (430)
T 2xyi_A 312 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKIGEE---QSTEDAEDG--PPELLFI-HGGHT-AKISD 383 (430)
T ss_dssp SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGGGTTCC---CCHHHHHHC--CTTEEEE-CCCCS-SCEEE
T ss_pred CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCCCCccc---cCccccccC--CcceEEE-cCCCC-CCceE
Confidence 6788999999999999999999 57999999998 799999621100 000000000 0013333 35654 35999
Q ss_pred EEEccCCC-EEEEEeCCCeEEEEEcCC
Q 046828 455 ICFSHYSQ-WIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 455 IaFSpDg~-~Las~S~dgTvhIw~i~~ 480 (627)
++|+|+++ +|++++.||+|+||++..
T Consensus 384 ~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 384 FSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred EEECCCCCCEEEEEECCCCEEEeEccc
Confidence 99999999 899999999999999864
No 90
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.6e-18 Score=187.48 Aligned_cols=177 Identities=12% Similarity=0.190 Sum_probs=129.7
Q ss_pred CcEEEEEECC--CCceEEEEe---cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeE----EEEcCCCCCCCCCC
Q 046828 179 PTAVRFYSLR--SHNYVHVLR---FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKF----SVLTYPVPHFGGQG 246 (627)
Q Consensus 179 ~~tV~lwdl~--t~~~V~tL~---f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~----tl~~~p~~~~~~~g 246 (627)
+++|+|||+. +++.+..+. +...|.+|+|++ ++|+++. ++.|++||+.+++... .+.+|..+
T Consensus 124 dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~------ 197 (450)
T 2vdu_B 124 DKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSM------ 197 (450)
T ss_dssp GTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSC------
T ss_pred CCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCc------
Confidence 4789999999 899998885 557999999997 6777775 4689999998876543 33333221
Q ss_pred CcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeE
Q 046828 247 TSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKT 326 (627)
Q Consensus 247 ~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~ 326 (627)
+ ..|++.++.. .+.
T Consensus 198 -------v-------~~~~~sp~~~-------------------------~~~--------------------------- 211 (450)
T 2vdu_B 198 -------L-------TDVHLIKDSD-------------------------GHQ--------------------------- 211 (450)
T ss_dssp -------E-------EEEEEEECTT-------------------------SCE---------------------------
T ss_pred -------e-------EEEEEcCCCC-------------------------CCc---------------------------
Confidence 1 1233333200 000
Q ss_pred EeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEE-eccCCCCeEEEEECCCCCEEEEEeC
Q 046828 327 LSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQ-FRAHTSPISALCFDRSGTLLVTASI 405 (627)
Q Consensus 327 ~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~-~~aH~~~Is~laFspdG~lLaTaS~ 405 (627)
| + ..++.|+.|+|||+.+++.+.. +.+|..+|.+++|+ +|++|++++.
T Consensus 212 ---~-----------------------l----~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~ 260 (450)
T 2vdu_B 212 ---F-----------------------I----ITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGG 260 (450)
T ss_dssp ---E-----------------------E----EEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEES
T ss_pred ---E-----------------------E----EEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeC
Confidence 0 0 0234689999999999988877 56999999999999 9999999999
Q ss_pred CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeec-----------------------CCcCcEEEEEEccCCC
Q 046828 406 HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRG-----------------------MTSAVIQDICFSHYSQ 462 (627)
Q Consensus 406 dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG-----------------------~t~a~I~sIaFSpDg~ 462 (627)
||+ |+|||+. ++. .+..+..+ .....|.+|+|+||++
T Consensus 261 d~~-v~vwd~~-------~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 320 (450)
T 2vdu_B 261 DDK-IFAWDWK-------TGK------------NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 (450)
T ss_dssp SSE-EEEEETT-------TCC------------EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred CCe-EEEEECC-------CCc------------EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence 997 8999986 232 33333211 1123499999999999
Q ss_pred EEEEEe-CCCeEEEEEc
Q 046828 463 WIAIVS-SRGTCHIFVL 478 (627)
Q Consensus 463 ~Las~S-~dgTvhIw~i 478 (627)
+|++++ .+++|+||++
T Consensus 321 ~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 321 FVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEEEETTCSEEEEEEE
T ss_pred EEEEEECCCCeEEEEEe
Confidence 999999 8999999999
No 91
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.83 E-value=1.3e-18 Score=178.27 Aligned_cols=237 Identities=13% Similarity=0.152 Sum_probs=172.7
Q ss_pred CCCCcEEEEEeeccCCCCCCCC-eEEEEeccCcEEEEec-CCCCCceEEeee--cCCceEEEEEeeCCCCCCCCCCcCCC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFK-HVLLLGYSNGFQVLDV-EDATNVSELVSR--RDDPVTFLQMQPLPAKSDGQEGFRNS 135 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~-~vl~~Gy~~G~qVWdv-~~~~~~~ells~--~dG~V~~v~~lp~p~~~~~~D~f~~~ 135 (627)
.+.+.|..+.|... .+ .+++.+.++.+++||+ +... ...+.. |.+.|..+.+.| .
T Consensus 54 ~~~~~v~~~~~~~~------~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~~~~v~~l~~~~-~------------ 112 (342)
T 1yfq_A 54 RYKHPLLCCNFIDN------TDLQIYVGTVQGEILKVDLIGSPS--FQALTNNEANLGICRICKYG-D------------ 112 (342)
T ss_dssp ECSSCEEEEEEEES------SSEEEEEEETTSCEEEECSSSSSS--EEECBSCCCCSCEEEEEEET-T------------
T ss_pred ecCCceEEEEECCC------CCcEEEEEcCCCeEEEEEeccCCc--eEeccccCCCCceEEEEeCC-C------------
Confidence 35677888888642 36 6888888899999999 7654 456666 889999999886 3
Q ss_pred CCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCC---------CceEEEEecCCeEEEEE
Q 046828 136 HPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRS---------HNYVHVLRFRSTVYMVR 206 (627)
Q Consensus 136 rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t---------~~~V~tL~f~s~V~sV~ 206 (627)
.+|+... .+++|++||+++ ++++.++.+...|.+++
T Consensus 113 -~~l~s~~----------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 157 (342)
T 1yfq_A 113 -DKLIAAS----------------------------------WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD 157 (342)
T ss_dssp -TEEEEEE----------------------------------TTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred -CEEEEEc----------------------------------CCCeEEEEcccccccccccccCCeeeEEeeCCceEEEE
Confidence 4554432 137799999998 88888888888999999
Q ss_pred ecCcEEEEEe-CCeEEEEeCCC-CceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcC-CCCCcCCCCccCCCC
Q 046828 207 CSPRIVAVGL-AAQIYCFDALT-LESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYAS-NNPLLPNTGRLSPQS 283 (627)
Q Consensus 207 ~s~~~LaV~~-~~~I~i~D~~t-~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~-~~~~v~~~gr~~~q~ 283 (627)
+++..|+++. ++.|++||+.+ ++........+.. ... +.+++.+ +...
T Consensus 158 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-----------~~i-------~~i~~~~~~~~~----------- 208 (342)
T 1yfq_A 158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK-----------YQI-------RDVALLPKEQEG----------- 208 (342)
T ss_dssp ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCS-----------SCE-------EEEEECSGGGCE-----------
T ss_pred ecCCcEEEEeCCCeEEEEECCccccccceeeecCCC-----------Cce-------eEEEECCCCCCE-----------
Confidence 9997777776 45899999998 6643332221111 001 2233332 1100
Q ss_pred CCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCC
Q 046828 284 LTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDI 363 (627)
Q Consensus 284 ~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~ 363 (627)
+ ..+..
T Consensus 209 ----------------------------l----------------------------------------------~~~~~ 214 (342)
T 1yfq_A 209 ----------------------------Y----------------------------------------------ACSSI 214 (342)
T ss_dssp ----------------------------E----------------------------------------------EEEET
T ss_pred ----------------------------E----------------------------------------------EEEec
Confidence 0 01346
Q ss_pred CCeEEEEECCCC------eEEEEeccCCC---------CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCc
Q 046828 364 AGMVVVKDIVSR------SVISQFRAHTS---------PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSAS 428 (627)
Q Consensus 364 dG~V~IwD~~s~------~~l~~~~aH~~---------~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~ 428 (627)
+|.|+|||+... +.+..++.|.. +|.+++|+|+|++|++++.||+ |+|||+. ++
T Consensus 215 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~vwd~~-------~~--- 283 (342)
T 1yfq_A 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQ-------TR--- 283 (342)
T ss_dssp TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETT-------TT---
T ss_pred CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce-EEEEcCc-------cH---
Confidence 899999999887 77888998866 9999999999999999999998 8999986 33
Q ss_pred cccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCe-EEEEEc
Q 046828 429 QTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGT-CHIFVL 478 (627)
Q Consensus 429 ~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgT-vhIw~i 478 (627)
..+..+ .+++...|.+++ ||+++|++++.||+ .+.|..
T Consensus 284 ---------~~~~~~-~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 284 ---------KKIKNF-AKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ---------EEEEEC-CCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred ---------hHhhhh-hcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 245554 565345699999 99999999999999 655554
No 92
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.83 E-value=1e-19 Score=220.29 Aligned_cols=256 Identities=14% Similarity=0.181 Sum_probs=180.6
Q ss_pred CcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEE
Q 046828 63 DQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVV 142 (627)
Q Consensus 63 d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv 142 (627)
..|..+.|.. ..+.+++.+.++.+++||+.... ....+..|.+.|..+.+.|.. .+|+..
T Consensus 962 ~~i~~~~~sp------~g~~l~~g~~~g~i~i~d~~~~~-~~~~~~~h~~~v~~l~~s~dg-------------~~l~s~ 1021 (1249)
T 3sfz_A 962 AQVSCCCLSP------HLEYVAFGDEDGAIKIIELPNNR-VFSSGVGHKKAVRHIQFTADG-------------KTLISS 1021 (1249)
T ss_dssp SCEEEEEECT------TSSEEEEEETTSCCEEEETTTTS-CEEECCCCSSCCCCEEECSSS-------------SCEEEE
T ss_pred CcEEEEEEcC------CCCEEEEEcCCCCEEEEEcCCCc-eeeecccCCCceEEEEECCCC-------------CEEEEE
Confidence 4566666642 23567777777789999999855 455566788899888887643 455432
Q ss_pred EccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCCeE
Q 046828 143 ACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAAQI 220 (627)
Q Consensus 143 ~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~~I 220 (627)
+ .+++|++||+.+++.+....+...|.++.+++ ++++.+.++.|
T Consensus 1022 ~----------------------------------~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v 1067 (1249)
T 3sfz_A 1022 S----------------------------------EDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTV 1067 (1249)
T ss_dssp C----------------------------------SSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEE
T ss_pred c----------------------------------CCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcE
Confidence 1 13679999999999887666788999999987 45555567799
Q ss_pred EEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcc
Q 046828 221 YCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNL 300 (627)
Q Consensus 221 ~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~ 300 (627)
++||+.+++.+.++.+|..+ +..+ ++.++...
T Consensus 1068 ~vwd~~~~~~~~~~~~~~~~-------------v~~~-------~~s~d~~~---------------------------- 1099 (1249)
T 3sfz_A 1068 KVWNVITGRIERDFTCHQGT-------------VLSC-------AISSDATK---------------------------- 1099 (1249)
T ss_dssp EEEETTTTCCCEEEECCSSC-------------CCCE-------EECSSSSS----------------------------
T ss_pred EEEECCCCceeEEEcccCCc-------------EEEE-------EECCCCCE----------------------------
Confidence 99999999998888776543 2223 33322100
Q ss_pred cchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEE
Q 046828 301 MARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQ 380 (627)
Q Consensus 301 v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~ 380 (627)
+ ..++.||.|+|||+.+++.+..
T Consensus 1100 -----------------------------------------------------l----~s~s~d~~v~iwd~~~~~~~~~ 1122 (1249)
T 3sfz_A 1100 -----------------------------------------------------F----SSTSADKTAKIWSFDLLSPLHE 1122 (1249)
T ss_dssp -----------------------------------------------------C----EEECCSSCCCEECSSSSSCSBC
T ss_pred -----------------------------------------------------E----EEEcCCCcEEEEECCCcceeee
Confidence 0 0234688999999999999999
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccC
Q 046828 381 FRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHY 460 (627)
Q Consensus 381 ~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpD 460 (627)
+.+|..+|.+++|+|||++||+++.||+ |+|||+. +|....... .....+...++. ..|.+++||||
T Consensus 1123 l~~h~~~v~~~~~s~dg~~lat~~~dg~-i~vwd~~-------~~~~~~~~~----~~~~~~~~~~~~-~~v~~l~fs~d 1189 (1249)
T 3sfz_A 1123 LKGHNGCVRCSAFSLDGILLATGDDNGE-IRIWNVS-------DGQLLHSCA----PISVEEGTATHG-GWVTDVCFSPD 1189 (1249)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEETTSC-CCEEESS-------SSCCCCCCC----CCC-------CC-SCCCEEEECTT
T ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCE-EEEEECC-------CCceEEEec----cccccccccccC-ceEEEEEECCC
Confidence 9999999999999999999999999998 7999986 221100000 000111112333 35999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCCeeecccccc
Q 046828 461 SQWIAIVSSRGTCHIFVLTPFGGETVLQIQNS 492 (627)
Q Consensus 461 g~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s 492 (627)
+++|++++ |+|++|++........+..|..
T Consensus 1190 g~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~ 1219 (1249)
T 3sfz_A 1190 SKTLVSAG--GYLKWWNVATGDSSQTFYTNGT 1219 (1249)
T ss_dssp SSCEEEES--SSEEEBCSSSCBCCCCCCCSSC
T ss_pred CCEEEECC--CeEEEEECCCCceeeeeeccCC
Confidence 99999885 9999999987554444444543
No 93
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.3e-19 Score=207.00 Aligned_cols=264 Identities=13% Similarity=0.148 Sum_probs=177.7
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC-CceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCC
Q 046828 59 HELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT-NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHP 137 (627)
Q Consensus 59 ~~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~-~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rp 137 (627)
..|.+.|..+.|.. ..+.+++.+.++.++|||+.... .....+..|.++|.++.+.|... ..
T Consensus 6 ~gH~~~V~~l~~s~------dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~-----------~~ 68 (753)
T 3jro_A 6 NAHNELIHDAVLDY------YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF-----------GT 68 (753)
T ss_dssp --CCCCEEEECCCS------SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTS-----------CS
T ss_pred ccCcceeEEEEECC------CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCC-----------CC
Confidence 45778899999864 23567888888899999998532 33445667889999999976531 14
Q ss_pred EEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc--eEEEEe-cCCeEEEEEecC----c
Q 046828 138 LLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN--YVHVLR-FRSTVYMVRCSP----R 210 (627)
Q Consensus 138 Llavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~--~V~tL~-f~s~V~sV~~s~----~ 210 (627)
+|+.++ .+++|++||+++++ .+..+. +...|.++++++ +
T Consensus 69 ~l~s~s----------------------------------~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~ 114 (753)
T 3jro_A 69 ILASCS----------------------------------YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP 114 (753)
T ss_dssp EEEEEE----------------------------------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS
T ss_pred EEEEEe----------------------------------CCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCC
Confidence 555432 13669999999997 566665 556999999986 4
Q ss_pred EEEEEe-CCeEEEEeCCCCce--eEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCC
Q 046828 211 IVAVGL-AAQIYCFDALTLES--KFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPP 287 (627)
Q Consensus 211 ~LaV~~-~~~I~i~D~~t~e~--~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~ 287 (627)
+|+++. ++.|++||+.+.+. ...+.+|+.+ +. .+++.+..... .+..
T Consensus 115 ~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~-------------v~-------~l~~~p~~~~~--~~~~-------- 164 (753)
T 3jro_A 115 LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------VN-------SASWAPATIEE--DGEH-------- 164 (753)
T ss_dssp EEEEEETTSEEEEEECCSSSCCCCEEEECCSSC-------------EE-------EEEECCCC-----------------
T ss_pred EEEEEeCCCcEEEEEeecCCCcceeEeecCCCc-------------eE-------EEEecCccccc--cccc--------
Confidence 677765 56899999988743 3444444332 22 23333311000 0000
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeE
Q 046828 288 SVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMV 367 (627)
Q Consensus 288 ~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V 367 (627)
. + .++ +.. ...+..||.|
T Consensus 165 ------------------------~-------~--------------~~d--------------~~~---l~sgs~dg~I 182 (753)
T 3jro_A 165 ------------------------N-------G--------------TKE--------------SRK---FVTGGADNLV 182 (753)
T ss_dssp -----------------------------------------------CGG--------------GCC---EEEEETTSCE
T ss_pred ------------------------c-------c--------------CCC--------------CCE---EEEEECCCeE
Confidence 0 0 000 000 0134679999
Q ss_pred EEEECCCC----eEEEEeccCCCCeEEEEECCC---CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 368 VVKDIVSR----SVISQFRAHTSPISALCFDRS---GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 368 ~IwD~~s~----~~l~~~~aH~~~Is~laFspd---G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
+|||+.++ ..+..+.+|..+|.+++|+|+ |.+|++++.||+ |+|||+.... +. . ...+
T Consensus 183 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-I~iwd~~~~~-----~~------~---~~~~ 247 (753)
T 3jro_A 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNEQ-----GP------W---KKTL 247 (753)
T ss_dssp EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC-EEEEEESSSS-----SC------C---BCCB
T ss_pred EEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE-EEEecCCCCC-----Cc------c---eeEE
Confidence 99999877 567788999999999999999 999999999998 8999986210 00 0 0011
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
.. ..++ ...|.+++|+||+++|++++.||+|+||++...+
T Consensus 248 ~~-~~~~-~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 248 LK-EEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SS-SSCC-SSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ec-cCCC-CCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 11 1122 3459999999999999999999999999998543
No 94
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.83 E-value=9.5e-19 Score=185.43 Aligned_cols=140 Identities=16% Similarity=0.136 Sum_probs=97.5
Q ss_pred CeEEEEECCCCeEEE--EeccCCCCeEEEEECCCCCEEEEEeCCCC---EEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 365 GMVVVKDIVSRSVIS--QFRAHTSPISALCFDRSGTLLVTASIHGN---NINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 365 G~V~IwD~~s~~~l~--~~~aH~~~Is~laFspdG~lLaTaS~dGt---~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
+.+.+|+..+++.+. ....|...|.+++|+|+|++|++++.++. .+++|++. . +. .....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~-~------~~--------~~~~~ 261 (365)
T 4h5i_A 197 SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIK-S------GN--------TSVLR 261 (365)
T ss_dssp SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEE-T------TE--------EEEEE
T ss_pred eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccc-c------ce--------eccee
Confidence 456677777766543 34578899999999999999999998874 47888875 1 10 00012
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeee-cccccccccCCCCCCCccCCCCCCCccccccC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETV-LQIQNSHVDRPTLSPVLSVPWWSSPSFMINQP 518 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~-~~~h~s~v~~~~~~p~~~~~~~~~~~~s~~q~ 518 (627)
...+ .++.. .|.+|+|||||++||+++.|++|+||++........ ++.|...+....+.|...+...-+.+-++..|
T Consensus 262 ~~~~-~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw 339 (365)
T 4h5i_A 262 SKQV-TNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHII 339 (365)
T ss_dssp EEEE-ESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred eeee-cCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 2223 45543 499999999999999999999999999987554445 46788777665666665444444445555555
Q ss_pred CCC
Q 046828 519 SFS 521 (627)
Q Consensus 519 ~~~ 521 (627)
.++
T Consensus 340 ~ip 342 (365)
T 4h5i_A 340 KLP 342 (365)
T ss_dssp ECC
T ss_pred EcC
Confidence 553
No 95
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.83 E-value=2.7e-20 Score=194.51 Aligned_cols=202 Identities=11% Similarity=0.123 Sum_probs=129.9
Q ss_pred cEEEEEECCCC--ceEEEEe-cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCc---eeEEEEcCCCCCCCCCCCcCc
Q 046828 180 TAVRFYSLRSH--NYVHVLR-FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLE---SKFSVLTYPVPHFGGQGTSGV 250 (627)
Q Consensus 180 ~tV~lwdl~t~--~~V~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e---~~~tl~~~p~~~~~~~g~~~~ 250 (627)
++|+|||+.++ +.+.++. +...|.++++++ ++|+++. ++.|++||+.+++ ....+..|..+
T Consensus 33 ~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~---------- 102 (377)
T 3dwl_C 33 NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRA---------- 102 (377)
T ss_dssp SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSC----------
T ss_pred CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCc----------
Confidence 67999999998 7777887 456999999997 6777776 5689999999877 33333333221
Q ss_pred ccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeee
Q 046828 251 NIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRY 330 (627)
Q Consensus 251 ~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y 330 (627)
+ ..+++.++...
T Consensus 103 ---v-------~~~~~~~~~~~---------------------------------------------------------- 114 (377)
T 3dwl_C 103 ---A-------TFVRWSPNEDK---------------------------------------------------------- 114 (377)
T ss_dssp ---E-------EEEECCTTSSC----------------------------------------------------------
T ss_pred ---e-------EEEEECCCCCE----------------------------------------------------------
Confidence 1 12333321100
Q ss_pred eccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe---EEEEecc-CCCCeEEEEECCCCCEEEEEeCC
Q 046828 331 YQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS---VISQFRA-HTSPISALCFDRSGTLLVTASIH 406 (627)
Q Consensus 331 ~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~---~l~~~~a-H~~~Is~laFspdG~lLaTaS~d 406 (627)
+ ..+..||.|+|||+.+++ .+..+.. |..+|.+++|+|+|++|++++.|
T Consensus 115 -----------------------l----~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 167 (377)
T 3dwl_C 115 -----------------------F----AVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD 167 (377)
T ss_dssp -----------------------C----EEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred -----------------------E----EEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC
Confidence 0 123468999999999886 4777887 99999999999999999999999
Q ss_pred CCEEEEEeCCCCCCCCCCCCCccccCCCC---ceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 407 GNNINIFRIMPSSSKGRSGSASQTYDWTS---SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 407 Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~---~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
|+ |+|||+.... . .... ....+.. ....+..+ ++. ..|.+++|+||+++|++++.||+|+||++.....
T Consensus 168 ~~-i~iwd~~~~~-~--~~~~-~~~~~~~~~~~~~~~~~~--~~~-~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 168 RK-AYVLSAYVRD-V--DAKP-EASVWGSRLPFNTVCAEY--PSG-GWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp SC-EEEEEECCSS-C--C-CC-CSCSSCSCCCEEEEEECC--CCS-SSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred CE-EEEEEEEecc-c--CCCc-cccccccccchhhhhhcc--cCC-ceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 98 8999984110 0 0000 0000110 01223333 554 4599999999999999999999999999987665
Q ss_pred ----eeecccccccc
Q 046828 484 ----ETVLQIQNSHV 494 (627)
Q Consensus 484 ----~~~~~~h~s~v 494 (627)
...+..|...+
T Consensus 240 ~~~~~~~~~~~~~~v 254 (377)
T 3dwl_C 240 PPRALITVKLSQLPL 254 (377)
T ss_dssp CEEECCCEECSSSCE
T ss_pred cceeeEeecCCCCce
Confidence 44556665433
No 96
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.83 E-value=7.3e-19 Score=185.22 Aligned_cols=115 Identities=13% Similarity=0.209 Sum_probs=82.6
Q ss_pred CCCCCe-EEEEECCCCeEEEEec-c-CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCc-------cc
Q 046828 361 TDIAGM-VVVKDIVSRSVISQFR-A-HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSAS-------QT 430 (627)
Q Consensus 361 ~~~dG~-V~IwD~~s~~~l~~~~-a-H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~-------~~ 430 (627)
++.||+ |+|||+.+++.+..|. + |..+|.+++|+|||++||+++.||+ |+|||+...... ...... -.
T Consensus 213 ~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~-v~iw~~~~~~~~-~~~~~~~~~~~~~~~ 290 (355)
T 3vu4_A 213 CSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT-LHVFEIFNDQDN-KRHALKGWINMKYFQ 290 (355)
T ss_dssp EETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE-EEEEESSCCSCC-CSEETTTTEECCCCC
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE-EEEEEccCCCCc-ccccccceeeccccc
Confidence 457897 9999999999999998 5 9999999999999999999999998 899998621100 000000 00
Q ss_pred cCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 431 YDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 431 ~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
..|. ...+.+..+. ...+..++|++|+++|++++.||++++|++...
T Consensus 291 ~~~~---~~~~~~~~~~-~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 291 SEWS---LCNFKLSVDK-HVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CSSC---SEEEECCCCT-TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred cccc---eeEEEeccCC-CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 0000 0122222221 122467999999999999999999999998754
No 97
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.5e-18 Score=179.37 Aligned_cols=212 Identities=15% Similarity=0.196 Sum_probs=151.4
Q ss_pred ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEE
Q 046828 103 VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAV 182 (627)
Q Consensus 103 ~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV 182 (627)
...++..|.++|.++.+.|.. .+|++.. .+++|
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~-------------~~l~~~~----------------------------------~dg~i 35 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYG-------------KRLATCS----------------------------------SDKTI 35 (379)
T ss_dssp --CCEEECCCCEEEEEECSSS-------------SEEEEEE----------------------------------TTSCE
T ss_pred ccEEecCCcccEEEEEEcCCC-------------CEEEEEE----------------------------------CCCcE
Confidence 356778899999999987643 5666432 12569
Q ss_pred EEEECC--CCceEEEEe-cCCeEEEEEec----CcEEEEEe-CCeEEEEeCCCCc--eeEEEEcCCCCCCCCCCCcCccc
Q 046828 183 RFYSLR--SHNYVHVLR-FRSTVYMVRCS----PRIVAVGL-AAQIYCFDALTLE--SKFSVLTYPVPHFGGQGTSGVNI 252 (627)
Q Consensus 183 ~lwdl~--t~~~V~tL~-f~s~V~sV~~s----~~~LaV~~-~~~I~i~D~~t~e--~~~tl~~~p~~~~~~~g~~~~~~ 252 (627)
+|||+. +++.+.++. +...|.+|+++ .++|+++. ++.|++||+.+++ .+..+..|..+
T Consensus 36 ~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~------------ 103 (379)
T 3jrp_A 36 KIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS------------ 103 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC------------
T ss_pred EEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcc------------
Confidence 999998 667778887 55699999997 46787776 5689999999987 44444444332
Q ss_pred ccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 253 GYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 253 ~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
+. -+++.++.. +.. +
T Consensus 104 -v~-------~~~~~~~~~--------------------------~~~-----------l-------------------- 118 (379)
T 3jrp_A 104 -VN-------SVQWAPHEY--------------------------GPL-----------L-------------------- 118 (379)
T ss_dssp -EE-------EEEECCGGG--------------------------CSE-----------E--------------------
T ss_pred -eE-------EEEeCCCCC--------------------------CCE-----------E--------------------
Confidence 22 233332100 000 0
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC--eEEEEeccCCCCeEEEEECC-------------CC
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR--SVISQFRAHTSPISALCFDR-------------SG 397 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~--~~l~~~~aH~~~Is~laFsp-------------dG 397 (627)
..+..||.|+|||+.+. .....+..|..+|.+++|+| ++
T Consensus 119 --------------------------~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T 3jrp_A 119 --------------------------LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 172 (379)
T ss_dssp --------------------------EEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTT
T ss_pred --------------------------EEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCC
Confidence 02346899999999887 34557789999999999999 79
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccC---CCEEEEEeCCCeEE
Q 046828 398 TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHY---SQWIAIVSSRGTCH 474 (627)
Q Consensus 398 ~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpD---g~~Las~S~dgTvh 474 (627)
.+|++++.||+ |+|||+. . +. ....+.....++. ..|.+++|+|| +++|++++.||+|+
T Consensus 173 ~~l~~~~~dg~-i~i~d~~-~------~~---------~~~~~~~~~~~h~-~~v~~~~~sp~~~~~~~l~s~~~dg~i~ 234 (379)
T 3jrp_A 173 RKFVTGGADNL-VKIWKYN-S------DA---------QTYVLESTLEGHS-DWVRDVAWSPTVLLRSYLASVSQDRTCI 234 (379)
T ss_dssp CEEEEEETTSC-EEEEEEE-T------TT---------TEEEEEEEECCCS-SCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred CEEEEEeCCCe-EEEEEec-C------CC---------cceeeEEEEeccc-CcEeEEEECCCCCCCCeEEEEeCCCEEE
Confidence 99999999998 8999985 1 11 0012223335654 45999999999 99999999999999
Q ss_pred EEEcCCCC
Q 046828 475 IFVLTPFG 482 (627)
Q Consensus 475 Iw~i~~~g 482 (627)
||++....
T Consensus 235 iwd~~~~~ 242 (379)
T 3jrp_A 235 IWTQDNEQ 242 (379)
T ss_dssp EEEESSTT
T ss_pred EEeCCCCC
Confidence 99998653
No 98
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=7.5e-19 Score=183.09 Aligned_cols=101 Identities=13% Similarity=0.113 Sum_probs=76.4
Q ss_pred CCCCCeEEEEECCCCeEE-EEecc-CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 361 TDIAGMVVVKDIVSRSVI-SQFRA-HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l-~~~~a-H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
+..||.|+|||+.+++.+ ..|.. |..+|.+|+|+|+|.+|+++++ ++ |+|||+.. +...
T Consensus 188 g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~-v~iwd~~~-------~~~~---------- 248 (343)
T 3lrv_A 188 YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QT-VVCFDLRK-------DVGT---------- 248 (343)
T ss_dssp ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SB-EEEEETTS-------STTC----------
T ss_pred EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-Ce-EEEEEcCC-------CCcc----------
Confidence 357899999999999887 88998 9999999999999999999995 45 89999962 1100
Q ss_pred EEEEEeecCCcCcE--EEEEEccCCCEEEEEeC-CCeEEEEEcCCC
Q 046828 439 HLYKLHRGMTSAVI--QDICFSHYSQWIAIVSS-RGTCHIFVLTPF 481 (627)
Q Consensus 439 ~l~~l~rG~t~a~I--~sIaFSpDg~~Las~S~-dgTvhIw~i~~~ 481 (627)
+..+...++. ..+ .+++|+||+++|++++. |++++||+++..
T Consensus 249 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 249 LAYPTYTIPE-FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp BSSCCCBC------CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred eeeccccccc-ccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 0000000110 112 46999999999999999 999999998653
No 99
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.82 E-value=5.2e-19 Score=189.11 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=91.2
Q ss_pred CCCCCeEEEEECCCCeEEEEecc--CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRA--HTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~a--H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
+..||.|+|||+.+++.+..+.. |..+|.+++|+|+|.+|++++.||+ |+|||+. .+ .
T Consensus 188 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-i~iwd~~-------~~------------~ 247 (437)
T 3gre_A 188 LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGI-IDIWDIR-------FN------------V 247 (437)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSC-EEEEETT-------TT------------E
T ss_pred EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCe-EEEEEcC-------Cc------------c
Confidence 46789999999999999999998 8999999999999999999999998 8999986 22 2
Q ss_pred EEEEEeecCCcCcEEEEEE----ccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccc
Q 046828 439 HLYKLHRGMTSAVIQDICF----SHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNS 492 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaF----SpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s 492 (627)
.+..+..++. ..|.+++| ++|+++|++++.||+|+||++........+..|..
T Consensus 248 ~~~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 304 (437)
T 3gre_A 248 LIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDE 304 (437)
T ss_dssp EEEEEBCTTC-EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSS
T ss_pred EEEEEecCCC-CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCC
Confidence 4555543443 36999954 56789999999999999999987655556666644
No 100
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.82 E-value=7.1e-19 Score=183.73 Aligned_cols=237 Identities=15% Similarity=0.139 Sum_probs=164.1
Q ss_pred eccCcEEEEecCCCCCceEEeeecCCceEEEEEee-CCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccC
Q 046828 87 GYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQP-LPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRD 165 (627)
Q Consensus 87 Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp-~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~ 165 (627)
..+..++||+++... ..+++..|.++|.++.+.| .. .+|+..+
T Consensus 20 ~~~~~~~v~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~-------------~~l~~~~---------------------- 63 (408)
T 4a11_B 20 RAESTRRVLGLELNK-DRDVERIHGGGINTLDIEPVEG-------------RYMLSGG---------------------- 63 (408)
T ss_dssp HHHHHHHHHTEEECT-TEEECCCCSSCEEEEEECTTTC-------------CEEEEEE----------------------
T ss_pred eccCcceeeccccCc-ceeeeeccCCcEEEEEEecCCC-------------CEEEEEc----------------------
Confidence 345568889988744 4677888999999999987 43 5665432
Q ss_pred CCCCCCCCCCCcCCcEEEEEECCCCceEEEEe--------------cCCeEEEEEecC---cEEEEEe-CCeEEEEeCCC
Q 046828 166 GYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLR--------------FRSTVYMVRCSP---RIVAVGL-AAQIYCFDALT 227 (627)
Q Consensus 166 g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~--------------f~s~V~sV~~s~---~~LaV~~-~~~I~i~D~~t 227 (627)
.+++|++||+.+++.+..+. +...|.++++++ ++|+++. ++.|++||+.+
T Consensus 64 ------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 131 (408)
T 4a11_B 64 ------------SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT 131 (408)
T ss_dssp ------------TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTT
T ss_pred ------------CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC
Confidence 12669999999998776665 667999999986 4677665 67899999999
Q ss_pred CceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhh
Q 046828 228 LESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVE 307 (627)
Q Consensus 228 ~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~ 307 (627)
++....+.. +.+ .. .+++.+..+. +.+
T Consensus 132 ~~~~~~~~~-~~~-------------~~-------~~~~~~~~~~-------------------------~~~------- 158 (408)
T 4a11_B 132 LQTADVFNF-EET-------------VY-------SHHMSPVSTK-------------------------HCL------- 158 (408)
T ss_dssp TEEEEEEEC-SSC-------------EE-------EEEECSSCSS-------------------------CCE-------
T ss_pred CccceeccC-CCc-------------ee-------eeEeecCCCC-------------------------CcE-------
Confidence 987766642 211 11 1222221100 000
Q ss_pred hhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCC
Q 046828 308 SSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSP 387 (627)
Q Consensus 308 ~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~ 387 (627)
+ ..+..+|.|++||+.+++.+..+..|..+
T Consensus 159 ----------------------------------------------~----~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 188 (408)
T 4a11_B 159 ----------------------------------------------V----AVGTRGPKVQLCDLKSGSCSHILQGHRQE 188 (408)
T ss_dssp ----------------------------------------------E----EEEESSSSEEEEESSSSCCCEEECCCCSC
T ss_pred ----------------------------------------------E----EEEcCCCeEEEEeCCCcceeeeecCCCCc
Confidence 0 02346899999999999999999999999
Q ss_pred eEEEEECCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCC--CCceeEEEEEeecCCcCcEEEEEEccCCCEE
Q 046828 388 ISALCFDRSGT-LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDW--TSSHVHLYKLHRGMTSAVIQDICFSHYSQWI 464 (627)
Q Consensus 388 Is~laFspdG~-lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~--~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~L 464 (627)
|.+++|+|+|. +|++++.||+ |+|||+.... .. ...... ......+.....++ ...|.+++|+||+++|
T Consensus 189 v~~~~~~~~~~~ll~~~~~dg~-i~i~d~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l 260 (408)
T 4a11_B 189 ILAVSWSPRYDYILATASADSR-VKLWDVRRAS-----GC-LITLDQHNGKKSQAVESANTAH-NGKVNGLCFTSDGLHL 260 (408)
T ss_dssp EEEEEECSSCTTEEEEEETTSC-EEEEETTCSS-----CC-SEECCTTTTCSCCCTTTSSCSC-SSCEEEEEECTTSSEE
T ss_pred EEEEEECCCCCcEEEEEcCCCc-EEEEECCCCC-----cc-cccccccccccceeeccccccc-cCceeEEEEcCCCCEE
Confidence 99999999999 6999999998 8999986211 00 000000 00000000001233 2459999999999999
Q ss_pred EEEeCCCeEEEEEcCCCC
Q 046828 465 AIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 465 as~S~dgTvhIw~i~~~g 482 (627)
++++.||+|++|++....
T Consensus 261 ~~~~~dg~i~vwd~~~~~ 278 (408)
T 4a11_B 261 LTVGTDNRMRLWNSSNGE 278 (408)
T ss_dssp EEEETTSCEEEEETTTCC
T ss_pred EEecCCCeEEEEECCCCc
Confidence 999999999999998644
No 101
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.82 E-value=8.2e-18 Score=176.58 Aligned_cols=189 Identities=9% Similarity=0.104 Sum_probs=139.5
Q ss_pred cEEEEEECCCCceEEEEe---cCCeEEEEEecC---cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccc
Q 046828 180 TAVRFYSLRSHNYVHVLR---FRSTVYMVRCSP---RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNI 252 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~---f~s~V~sV~~s~---~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~ 252 (627)
++|+|||+.+++....++ +...|.+++|++ ++|+++. ++.|++||+.+ +.+..+..+.... .
T Consensus 96 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~-------~--- 164 (383)
T 3ei3_B 96 GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWD-------Y--- 164 (383)
T ss_dssp SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSS-------C---
T ss_pred CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCC-------C---
Confidence 569999999999988886 556999999987 5777775 56899999986 5555665443110 0
Q ss_pred ccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 253 GYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 253 ~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
.+ ..+++.++... +
T Consensus 165 ~v-------~~~~~~~~~~~---------------------------------------l-------------------- 178 (383)
T 3ei3_B 165 WY-------CCVDVSVSRQM---------------------------------------L-------------------- 178 (383)
T ss_dssp CE-------EEEEEETTTTE---------------------------------------E--------------------
T ss_pred Ce-------EEEEECCCCCE---------------------------------------E--------------------
Confidence 01 22344332100 0
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCC-EEEEEeCCCCEEE
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGT-LLVTASIHGNNIN 411 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~-lLaTaS~dGt~I~ 411 (627)
..+..||.|++||+ +++.+..+.+|..+|.+++|+|+|. +|++++.||+ |+
T Consensus 179 --------------------------~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~-i~ 230 (383)
T 3ei3_B 179 --------------------------ATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDAT-VK 230 (383)
T ss_dssp --------------------------EEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSE-EE
T ss_pred --------------------------EEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCE-EE
Confidence 02347899999999 5778899999999999999999999 9999999997 89
Q ss_pred EEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCCCeeecccc
Q 046828 412 IFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 412 Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~~~gg~~~~~~h 490 (627)
|||+..... .+ ..+..+ ++. ..|.+++|+| |+++|++++.||+|+||++........+..|
T Consensus 231 iwd~~~~~~---~~------------~~~~~~--~~~-~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 292 (383)
T 3ei3_B 231 LWDLRNIKD---KN------------SYIAEM--PHE-KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH 292 (383)
T ss_dssp EEEGGGCCS---TT------------CEEEEE--ECS-SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEEC
T ss_pred EEeCCCCCc---cc------------ceEEEe--cCC-CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccc
Confidence 999962110 01 133333 343 4699999999 9999999999999999999877665555555
Q ss_pred c
Q 046828 491 N 491 (627)
Q Consensus 491 ~ 491 (627)
.
T Consensus 293 ~ 293 (383)
T 3ei3_B 293 P 293 (383)
T ss_dssp C
T ss_pred c
Confidence 3
No 102
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.82 E-value=5.5e-19 Score=190.61 Aligned_cols=111 Identities=14% Similarity=0.251 Sum_probs=87.4
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGT-LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~-lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
++.+|.|+|||+.. +.+..+.+|..+|.+|+|+|++. +|++++.||+ |+|||+.... .. .
T Consensus 227 g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~-v~iwd~~~~~-----~~------------~ 287 (435)
T 4e54_B 227 GDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQT-VKIWDLRQVR-----GK------------A 287 (435)
T ss_dssp ECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB-CCEEETTTCC-----SS------------S
T ss_pred EeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcce-eeEEeccccc-----cc------------c
Confidence 45789999999975 56778999999999999999986 8899999998 7999986211 00 0
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeeccccc
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQN 491 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~ 491 (627)
......+|. ..|.+|+|+||+++|++++.||+|+||++........+..|.
T Consensus 288 ~~~~~~~h~-~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~ 338 (435)
T 4e54_B 288 SFLYSLPHR-HPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP 338 (435)
T ss_dssp CCSBCCBCS-SCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred eEEEeeecc-ccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence 111123444 359999999999999999999999999998876666666654
No 103
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.82 E-value=9.4e-19 Score=186.92 Aligned_cols=259 Identities=13% Similarity=0.088 Sum_probs=140.1
Q ss_pred CeEEEEeccCcEEEEecCCCCCce----EEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeee
Q 046828 81 KHVLLLGYSNGFQVLDVEDATNVS----ELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVH 156 (627)
Q Consensus 81 ~~vl~~Gy~~G~qVWdv~~~~~~~----ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~ 156 (627)
..++..+.|+.++|||+....... ..+..|.+.|..|.+.|........|+ .+||.++
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-----~~las~s------------- 163 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-----QVIASVG------------- 163 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-----EEEEEEE-------------
T ss_pred CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-----CEEEEEE-------------
Confidence 346667778999999999754221 124568999999999875322111122 4555332
Q ss_pred ccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEE-ecCCeEEEEEecC---cEEEEEe-CCeEEEEeCCCCcee
Q 046828 157 VGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVL-RFRSTVYMVRCSP---RIVAVGL-AAQIYCFDALTLESK 231 (627)
Q Consensus 157 ~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL-~f~s~V~sV~~s~---~~LaV~~-~~~I~i~D~~t~e~~ 231 (627)
.+++|+|||++++.++..+ .++++|.+|+|+| ++|+++. ++.|++||+.+++..
T Consensus 164 ---------------------~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~ 222 (393)
T 4gq1_A 164 ---------------------DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSA 222 (393)
T ss_dssp ---------------------TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC--
T ss_pred ---------------------CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccc
Confidence 2488999999988776655 5888999999997 4677775 558999999998876
Q ss_pred EEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhh
Q 046828 232 FSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQ 311 (627)
Q Consensus 232 ~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~ 311 (627)
..+..++... ....++....-+..... ..
T Consensus 223 ~~~~~~~~~~-----------~~~~~s~~~~~~~~~~~-----~~----------------------------------- 251 (393)
T 4gq1_A 223 EENSQTELVK-----------NPWLLTLNTLPLVNTCH-----SS----------------------------------- 251 (393)
T ss_dssp --------CS-----------CCCSEEEESGGGC----------------------------------------------
T ss_pred ccccccCCcc-----------cceEEecccccceeeee-----cc-----------------------------------
Confidence 6654433210 00111111110000000 00
Q ss_pred hhcceeecCCcce-eEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEE
Q 046828 312 LAAGLINLGDMGY-KTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISA 390 (627)
Q Consensus 312 l~~gl~~lg~~g~-~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~ 390 (627)
++... ..+. ++ .||+. .+ ..+..|+.|+|||+.+++....+..|...+..
T Consensus 252 --------~~~~~v~~v~-~~---~~dg~-------------~l----~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~ 302 (393)
T 4gq1_A 252 --------GIASSLANVR-WI---GSDGS-------------GI----LAMCKSGAWLRWNLFANNDYNEISDSTMKLGP 302 (393)
T ss_dssp --------CCSSSCSEEE-EE---TTTTC-------------EE----EEECTTSEEEEEEC------------------
T ss_pred --------cccccceeee-ee---cCCCC-------------EE----EEEeCCCCEEEEECccCCCCceEeeecCcccc
Confidence 00000 0000 00 01110 11 13568999999999988877777777766665
Q ss_pred EEECC--------------------CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC
Q 046828 391 LCFDR--------------------SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA 450 (627)
Q Consensus 391 laFsp--------------------dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a 450 (627)
++|.| ++.++++++.||+ |+|||+. ++. .+..+. ++. .
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~-V~lwd~~-------~~~------------~~~~~~-~~~-~ 360 (393)
T 4gq1_A 303 KNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGL-IQLINTY-------EKD------------SNSIPI-QLG-M 360 (393)
T ss_dssp -CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTE-EEEEETT-------CTT------------CCEEEE-ECS-S
T ss_pred EEEccccccccccCcceeEEEccCCCCEEEEEECCCCE-EEEEECC-------CCc------------EEEEec-CCC-C
Confidence 55544 4557888999997 8999986 221 222232 333 3
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 451 VIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 451 ~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.|.+|+|||||++||+++++| +.||++.-+
T Consensus 361 ~V~svafspdG~~LA~as~~G-v~lvrL~gf 390 (393)
T 4gq1_A 361 PIVDFCWHQDGSHLAIATEGS-VLLTRLMGF 390 (393)
T ss_dssp CEEEEEECTTSSEEEEEESSE-EEEEEEGGG
T ss_pred cEEEEEEcCCCCEEEEEeCCC-eEEEEEeCc
Confidence 599999999999999998765 666766543
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.81 E-value=7.3e-18 Score=178.95 Aligned_cols=247 Identities=11% Similarity=0.036 Sum_probs=171.5
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCC------CceEEeeecCCceEEEEEeeCCCCCCCCCCcC
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDAT------NVSELVSRRDDPVTFLQMQPLPAKSDGQEGFR 133 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~------~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~ 133 (627)
.+.+.|..+.|... ....+++.+.++.++|||+...+ +....+..|.+.|..+.+.|..
T Consensus 79 ~h~~~V~~~~~~p~-----~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~---------- 143 (402)
T 2aq5_A 79 GHTAPVLDIAWCPH-----NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA---------- 143 (402)
T ss_dssp CCSSCEEEEEECTT-----CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSB----------
T ss_pred cCCCCEEEEEeCCC-----CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCC----------
Confidence 46788999999642 22567777778889999999864 3345666788999999987652
Q ss_pred CCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEE--e-cCCeEEEEEecC-
Q 046828 134 NSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVL--R-FRSTVYMVRCSP- 209 (627)
Q Consensus 134 ~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL--~-f~s~V~sV~~s~- 209 (627)
..+|+... .+++|++||+++++.+.++ . +...|.++++++
T Consensus 144 --~~~l~s~~----------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 187 (402)
T 2aq5_A 144 --QNVLLSAG----------------------------------CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD 187 (402)
T ss_dssp --TTEEEEEE----------------------------------TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT
T ss_pred --CCEEEEEc----------------------------------CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCC
Confidence 13554322 1366999999999999999 4 567999999986
Q ss_pred -cEEEEEe-CCeEEEEeCCCCceeEEE-EcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCC
Q 046828 210 -RIVAVGL-AAQIYCFDALTLESKFSV-LTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSL 284 (627)
Q Consensus 210 -~~LaV~~-~~~I~i~D~~t~e~~~tl-~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~ 284 (627)
++|+++. ++.|++||+.+++.+.++ ..|.... ...+++.+ ++|+.+.
T Consensus 188 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~l~~g~---------------- 239 (402)
T 2aq5_A 188 GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTR------------PVHAVFVSEGKILTTGF---------------- 239 (402)
T ss_dssp SSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSS------------CCEEEECSTTEEEEEEE----------------
T ss_pred CCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCc------------ceEEEEcCCCcEEEEec----------------
Confidence 5676665 668999999999988887 4543210 11122211 1111110
Q ss_pred CCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCC
Q 046828 285 TPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIA 364 (627)
Q Consensus 285 t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~d 364 (627)
....+
T Consensus 240 ---------------------------------------------------------------------------~~~~d 244 (402)
T 2aq5_A 240 ---------------------------------------------------------------------------SRMSE 244 (402)
T ss_dssp ---------------------------------------------------------------------------CTTCC
T ss_pred ---------------------------------------------------------------------------cCCCC
Confidence 11468
Q ss_pred CeEEEEECCCCeE-EEEec-cCCCCeEEEEECCCCCEEEE-EeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 365 GMVVVKDIVSRSV-ISQFR-AHTSPISALCFDRSGTLLVT-ASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 365 G~V~IwD~~s~~~-l~~~~-aH~~~Is~laFspdG~lLaT-aS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
|.|+|||+.+.+. +..+. .|...|.+++|+|+|.+|++ ++.||+ |+|||+. ++. ..+.
T Consensus 245 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~-i~i~d~~-------~~~-----------~~~~ 305 (402)
T 2aq5_A 245 RQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS-IRYFEIT-------SEA-----------PFLH 305 (402)
T ss_dssp EEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC-EEEEEEC-------SST-----------TCEE
T ss_pred ceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe-EEEEEec-------CCC-----------cceE
Confidence 9999999998654 33333 57788999999999999975 557887 8999986 221 0122
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+..-.....|.+++|+||++++++ .++++++|++...
T Consensus 306 ~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 306 YLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp EEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred eecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 2221112345999999999999874 5779999999863
No 105
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.80 E-value=7.2e-18 Score=194.08 Aligned_cols=219 Identities=14% Similarity=0.183 Sum_probs=167.1
Q ss_pred ceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEE
Q 046828 103 VSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAV 182 (627)
Q Consensus 103 ~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV 182 (627)
+...+..|.+.|+++.+.|.. ++||+.. .+++|
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~-------------~~la~~~----------------------------------~~g~v 37 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTE-------------PWVLTTL----------------------------------YSGRV 37 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSS-------------SEEEEEE----------------------------------TTSEE
T ss_pred cceeeecCCCceEEEEECCCC-------------CEEEEEe----------------------------------CCCEE
Confidence 356778899999999987742 7776532 12679
Q ss_pred EEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceee
Q 046828 183 RFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMA 258 (627)
Q Consensus 183 ~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iA 258 (627)
+|||+++++.+.++. +..+|.+++|++ ++|+++. ++.|++||+.+++.+.++.+|..+ +..
T Consensus 38 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-------------v~~-- 102 (814)
T 3mkq_A 38 EIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY-------------IRS-- 102 (814)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC-------------EEE--
T ss_pred EEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC-------------EEE--
Confidence 999999999999998 556999999997 6777776 568999999999999988877543 222
Q ss_pred EcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCC
Q 046828 259 VGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDG 338 (627)
Q Consensus 259 l~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g 338 (627)
+++.++... +
T Consensus 103 -----~~~s~~~~~---------------------------------------l-------------------------- 112 (814)
T 3mkq_A 103 -----IAVHPTKPY---------------------------------------V-------------------------- 112 (814)
T ss_dssp -----EEECSSSSE---------------------------------------E--------------------------
T ss_pred -----EEEeCCCCE---------------------------------------E--------------------------
Confidence 333332100 0
Q ss_pred CCCCccCCCccccCcccccccCCCCCCeEEEEECCCC-eEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCC
Q 046828 339 SSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR-SVISQFRAHTSPISALCFDR-SGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 339 ~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~-~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~ 416 (627)
..++.||.|+|||+.++ .....+..|..+|.+++|+| +|.+|++++.||+ |++||+.
T Consensus 113 --------------------~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-v~vwd~~ 171 (814)
T 3mkq_A 113 --------------------LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT-VKVWSLG 171 (814)
T ss_dssp --------------------EEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEETT
T ss_pred --------------------EEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCe-EEEEECC
Confidence 01346899999999987 77788999999999999999 8999999999997 8999985
Q ss_pred CCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEcc--CCCEEEEEeCCCeEEEEEcCCCCCeeecccccccc
Q 046828 417 PSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSH--YSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNSHV 494 (627)
Q Consensus 417 p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSp--Dg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s~v 494 (627)
.+. ....+..+ ....|..++|+| |+++|++++.||+|++|++........+..|...+
T Consensus 172 -------~~~------------~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v 231 (814)
T 3mkq_A 172 -------QST------------PNFTLTTG-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231 (814)
T ss_dssp -------CSS------------CSEEEECC-CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred -------CCc------------ceeEEecC-CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCE
Confidence 121 22333332 334589999999 99999999999999999997755555566665443
No 106
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.80 E-value=1.4e-17 Score=168.45 Aligned_cols=101 Identities=21% Similarity=0.230 Sum_probs=77.6
Q ss_pred CCCCCeEEEEECCCCeEEEEec-------------cCCCCeEEEEECCC---CCEEEEEeCCCCEEEEEeCCCCCCCCCC
Q 046828 361 TDIAGMVVVKDIVSRSVISQFR-------------AHTSPISALCFDRS---GTLLVTASIHGNNINIFRIMPSSSKGRS 424 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~-------------aH~~~Is~laFspd---G~lLaTaS~dGt~I~Vwdi~p~~~~~~~ 424 (627)
+..||.|+|||+.+++.+..+. .|...|.+++|+|+ +.+|++++.+|. +.+|+.. .
T Consensus 130 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~~~~-------~ 201 (351)
T 3f3f_A 130 LGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA-IIYQRGK-------D 201 (351)
T ss_dssp EETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE-EEEEECT-------T
T ss_pred ecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc-EEEEccC-------C
Confidence 3578999999998876443333 68889999999998 999999999997 5666543 1
Q ss_pred CCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCC----CEEEEEeCCCeEEEEEcCCC
Q 046828 425 GSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYS----QWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 425 g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg----~~Las~S~dgTvhIw~i~~~ 481 (627)
+. ........++. ..|.+++|+|++ ++|++++.||+|+||++...
T Consensus 202 ~~-----------~~~~~~~~~h~-~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 202 GK-----------LHVAAKLPGHK-SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp SC-----------EEEEEECCCCC-SCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred Cc-----------eeeeeecCCCC-cceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 21 12233335654 459999999998 89999999999999999864
No 107
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=3.4e-17 Score=194.33 Aligned_cols=239 Identities=10% Similarity=0.116 Sum_probs=165.5
Q ss_pred CCCCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEE
Q 046828 60 ELKDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLL 139 (627)
Q Consensus 60 ~~~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLl 139 (627)
.+.+.|..+.|+.. .+.+++.+.++.++|||..... ......|.++|..+++.| - .+|
T Consensus 15 gh~~~V~~lafspd------g~~lAsgs~Dg~I~lw~~~~~~--~~~~~~~~~~V~~l~fsp-g-------------~~L 72 (902)
T 2oaj_A 15 GMSSKPIAAAFDFT------QNLLAIATVTGEVHIYGQQQVE--VVIKLEDRSAIKEMRFVK-G-------------IYL 72 (902)
T ss_dssp ECSSCEEEEEEETT------TTEEEEEETTSEEEEECSTTCE--EEEECSSCCCEEEEEEET-T-------------TEE
T ss_pred CCCCCcEEEEECCC------CCEEEEEeCCCEEEEEeCCCcE--EEEEcCCCCCEEEEEEcC-C-------------CEE
Confidence 45678999999742 3566777778889999987633 122224678899999886 2 345
Q ss_pred EEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe-
Q 046828 140 LVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL- 216 (627)
Q Consensus 140 avv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~- 216 (627)
+.+. .+++|+|||+++++.++++.++..|.+|+|++ ++|+++.
T Consensus 73 ~S~s----------------------------------~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~ 118 (902)
T 2oaj_A 73 VVIN----------------------------------AKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQ 118 (902)
T ss_dssp EEEE----------------------------------TTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEET
T ss_pred EEEE----------------------------------CcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcC
Confidence 4332 13789999999999999999889999999997 7888876
Q ss_pred CCeEEEEeCCCCcee-EEE----------EcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCC
Q 046828 217 AAQIYCFDALTLESK-FSV----------LTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLT 285 (627)
Q Consensus 217 ~~~I~i~D~~t~e~~-~tl----------~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t 285 (627)
++.|++||+.+++.. +.+ .+|..+ + .-|++.+.+.
T Consensus 119 dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~-------------V-------~sl~~sp~~~-------------- 164 (902)
T 2oaj_A 119 NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSP-------------I-------VSIQWNPRDI-------------- 164 (902)
T ss_dssp TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCC-------------C-------CEEEEETTEE--------------
T ss_pred CCcEEEEECCCCccccceeccccccccccccCCCC-------------e-------EEEEEccCCC--------------
Confidence 558999999988753 121 011110 1 1223222100
Q ss_pred CCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCC
Q 046828 286 PPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAG 365 (627)
Q Consensus 286 ~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG 365 (627)
+.+ ..+..+|
T Consensus 165 ------------------------------------------------------------------~~l----~~g~~dg 174 (902)
T 2oaj_A 165 ------------------------------------------------------------------GTV----LISYEYV 174 (902)
T ss_dssp ------------------------------------------------------------------EEE----EEECSSC
T ss_pred ------------------------------------------------------------------CEE----EEEeCCC
Confidence 000 1235789
Q ss_pred eEEEEECCCCeEEEEeccC------------------CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCC
Q 046828 366 MVVVKDIVSRSVISQFRAH------------------TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSA 427 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH------------------~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~ 427 (627)
.| |||+.+++.+..|..| ..+|.+++|+|||++|||++.||+ |+|||+. +|.
T Consensus 175 ~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lWd~~-------~g~- 244 (902)
T 2oaj_A 175 TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFWDAN-------SGH- 244 (902)
T ss_dssp EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEEETT-------TCC-
T ss_pred cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEEEECC-------CCc-
Confidence 99 9999999998888766 578999999999999999999998 8999986 232
Q ss_pred ccccCCCCceeEEEE--Ee--ecC------------CcCcEEEEEEc----cCC-CEEEEEeCC-----CeEEEEEcC
Q 046828 428 SQTYDWTSSHVHLYK--LH--RGM------------TSAVIQDICFS----HYS-QWIAIVSSR-----GTCHIFVLT 479 (627)
Q Consensus 428 ~~~~~~~~~~~~l~~--l~--rG~------------t~a~I~sIaFS----pDg-~~Las~S~d-----gTvhIw~i~ 479 (627)
.+.. +. .++ ....|.+++|+ ||+ .+|++++.+ .++++|++.
T Consensus 245 -----------~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~ 311 (902)
T 2oaj_A 245 -----------MIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLG 311 (902)
T ss_dssp -----------EEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred -----------EEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecC
Confidence 2221 11 112 12359999995 454 567777665 389999864
No 108
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.79 E-value=3.7e-17 Score=173.94 Aligned_cols=177 Identities=14% Similarity=0.189 Sum_probs=137.7
Q ss_pred CcEEEEEECCCCceEEEEec--CCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRF--RSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f--~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~ 253 (627)
+++|++||+.+++.+..+.. ...|.+|++++ ++|+++. ++.|++||+.+++.+.++.+|..+
T Consensus 112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------- 178 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQAR------------- 178 (401)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC-------------
T ss_pred CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCc-------------
Confidence 57899999999999988885 56999999987 6888876 568999999999988888766543
Q ss_pred cceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecc
Q 046828 254 YGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQD 333 (627)
Q Consensus 254 ~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~ 333 (627)
+..+++.++.|+.
T Consensus 179 v~~~~~~~~~l~~------------------------------------------------------------------- 191 (401)
T 4aez_A 179 VGCLSWNRHVLSS------------------------------------------------------------------- 191 (401)
T ss_dssp EEEEEEETTEEEE-------------------------------------------------------------------
T ss_pred eEEEEECCCEEEE-------------------------------------------------------------------
Confidence 2233333332222
Q ss_pred ccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECC-CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEE
Q 046828 334 FIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIV-SRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINI 412 (627)
Q Consensus 334 ~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~-s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~V 412 (627)
++.+|.|++||+. ....+..+..|..+|.+++|+|+|.+|++++.||+ |+|
T Consensus 192 ---------------------------~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~-v~i 243 (401)
T 4aez_A 192 ---------------------------GSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV-VQI 243 (401)
T ss_dssp ---------------------------EETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC-EEE
T ss_pred ---------------------------EcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe-EEE
Confidence 2467899999998 56778899999999999999999999999999998 899
Q ss_pred EeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCC-EEEEEe--CCCeEEEEEcCCCCCe
Q 046828 413 FRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQ-WIAIVS--SRGTCHIFVLTPFGGE 484 (627)
Q Consensus 413 wdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~-~Las~S--~dgTvhIw~i~~~gg~ 484 (627)
||+. .+ ..+..+ .++. ..|.+++|+|++. ++++++ .|++|++|++......
T Consensus 244 wd~~-------~~------------~~~~~~-~~~~-~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 244 WDAR-------SS------------IPKFTK-TNHN-AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV 297 (401)
T ss_dssp EETT-------CS------------SEEEEE-CCCS-SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE
T ss_pred ccCC-------CC------------CccEEe-cCCc-ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE
Confidence 9986 22 144444 3443 4599999999875 455544 6999999999865433
No 109
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.79 E-value=5e-16 Score=162.91 Aligned_cols=246 Identities=11% Similarity=0.081 Sum_probs=169.9
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEe-ccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEE
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLG-YSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLL 140 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~G-y~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLla 140 (627)
++.+..+.|.. ..+.+++.+ .++.+++||+.... +...+..+ +.+..+.+.|.- ..|+
T Consensus 31 ~~~~~~~~~s~------dg~~l~~~~~~d~~i~v~d~~~~~-~~~~~~~~-~~v~~~~~spdg-------------~~l~ 89 (391)
T 1l0q_A 31 GSNPMGAVISP------DGTKVYVANAHSNDVSIIDTATNN-VIATVPAG-SSPQGVAVSPDG-------------KQVY 89 (391)
T ss_dssp SSSEEEEEECT------TSSEEEEEEGGGTEEEEEETTTTE-EEEEEECS-SSEEEEEECTTS-------------SEEE
T ss_pred CCCcceEEECC------CCCEEEEECCCCCeEEEEECCCCe-EEEEEECC-CCccceEECCCC-------------CEEE
Confidence 34577777753 235665555 78889999998754 33334333 366777776532 5555
Q ss_pred EEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEE-EEEe-
Q 046828 141 VVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIV-AVGL- 216 (627)
Q Consensus 141 vv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~L-aV~~- 216 (627)
+... .+++|++||+++++.+..+..+..+.++++++ +.| +++.
T Consensus 90 ~~~~---------------------------------~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 136 (391)
T 1l0q_A 90 VTNM---------------------------------ASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNG 136 (391)
T ss_dssp EEET---------------------------------TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT
T ss_pred EEEC---------------------------------CCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCC
Confidence 4321 12679999999999999999888999999987 455 4554
Q ss_pred CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCC
Q 046828 217 AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPS 296 (627)
Q Consensus 217 ~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s 296 (627)
+++|++||+.+++.+..+..+..+ .-+++.++...
T Consensus 137 ~~~v~~~d~~~~~~~~~~~~~~~~---------------------~~~~~~~dg~~------------------------ 171 (391)
T 1l0q_A 137 DKTVSVINTVTKAVINTVSVGRSP---------------------KGIAVTPDGTK------------------------ 171 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECCSSE---------------------EEEEECTTSSE------------------------
T ss_pred CCEEEEEECCCCcEEEEEecCCCc---------------------ceEEECCCCCE------------------------
Confidence 568999999999887777543221 22333332100
Q ss_pred CCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe
Q 046828 297 NGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS 376 (627)
Q Consensus 297 ~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~ 376 (627)
+ .+ .+..+|.|++||+.+++
T Consensus 172 ---------------l-------------~~--------------------------------~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 172 ---------------V-------------YV--------------------------------ANFDSMSISVIDTVTNS 191 (391)
T ss_dssp ---------------E-------------EE--------------------------------EETTTTEEEEEETTTTE
T ss_pred ---------------E-------------EE--------------------------------EeCCCCEEEEEECCCCe
Confidence 0 00 12357899999999998
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEe---CCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEE
Q 046828 377 VISQFRAHTSPISALCFDRSGTLLVTAS---IHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQ 453 (627)
Q Consensus 377 ~l~~~~aH~~~Is~laFspdG~lLaTaS---~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~ 453 (627)
.+..+. |...+.+++|+|+|++|++++ .+++ |++||+. ++ ..+..+. .+ ..+.
T Consensus 192 ~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~-v~~~d~~-------~~------------~~~~~~~-~~--~~~~ 247 (391)
T 1l0q_A 192 VIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTG-------TN------------KITARIP-VG--PDPA 247 (391)
T ss_dssp EEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETT-------TT------------EEEEEEE-CC--SSEE
T ss_pred EEEEEe-cCCCccceEECCCCCEEEEEecCcCCCc-EEEEECC-------CC------------eEEEEEe-cC--CCcc
Confidence 887776 456789999999999999988 5676 8999985 23 2344443 32 2489
Q ss_pred EEEEccCCCEE-EEEeCCCeEEEEEcCCCCCeeecccc
Q 046828 454 DICFSHYSQWI-AIVSSRGTCHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 454 sIaFSpDg~~L-as~S~dgTvhIw~i~~~gg~~~~~~h 490 (627)
+++|+||+++| ++++.|++|++|++........+..|
T Consensus 248 ~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 248 GIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred EEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence 99999999988 56688999999999875444444444
No 110
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.78 E-value=3.5e-16 Score=166.34 Aligned_cols=237 Identities=8% Similarity=0.030 Sum_probs=165.9
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEE
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLV 141 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlav 141 (627)
...|..+.|.. ..+.++..+.++.+++||++... ....+..+...+..+.+.|.- ..|++
T Consensus 169 ~~~v~~~~~~~------~~~~~~s~~~d~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~-------------~~l~~ 228 (433)
T 3bws_A 169 LGFVETISIPE------HNELWVSQMQANAVHVFDLKTLA-YKATVDLTGKWSKILLYDPIR-------------DLVYC 228 (433)
T ss_dssp CCEEEEEEEGG------GTEEEEEEGGGTEEEEEETTTCC-EEEEEECSSSSEEEEEEETTT-------------TEEEE
T ss_pred CCceeEEEEcC------CCEEEEEECCCCEEEEEECCCce-EEEEEcCCCCCeeEEEEcCCC-------------CEEEE
Confidence 33555566632 12444455567889999998755 344445567777888877542 45544
Q ss_pred EEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe---
Q 046828 142 VACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL--- 216 (627)
Q Consensus 142 v~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~--- 216 (627)
... .+++|++||+++++.+..+.....+.++++++ +.|+++.
T Consensus 229 ~~~---------------------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 275 (433)
T 3bws_A 229 SNW---------------------------------ISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSA 275 (433)
T ss_dssp EET---------------------------------TTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEES
T ss_pred Eec---------------------------------CCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCC
Confidence 320 12679999999999999998888999999987 5777665
Q ss_pred ------CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCC
Q 046828 217 ------AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVS 290 (627)
Q Consensus 217 ------~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s 290 (627)
+++|++||+.+++.+..+.. +. .++.+++.++...
T Consensus 276 ~~~~~~dg~i~~~d~~~~~~~~~~~~-~~--------------------~~~~~~~~~~g~~------------------ 316 (433)
T 3bws_A 276 SNQESGGGRLGIYSMDKEKLIDTIGP-PG--------------------NKRHIVSGNTENK------------------ 316 (433)
T ss_dssp CTTCSCCEEEEEEETTTTEEEEEEEE-EE--------------------CEEEEEECSSTTE------------------
T ss_pred CccccCCCeEEEEECCCCcEEeeccC-CC--------------------CcceEEECCCCCE------------------
Confidence 45899999999876655421 11 1133444432100
Q ss_pred CCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEE
Q 046828 291 PSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVK 370 (627)
Q Consensus 291 ~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~Iw 370 (627)
++ + .+..++.|++|
T Consensus 317 -------------------------l~---------~--------------------------------~~~~~~~v~v~ 330 (433)
T 3bws_A 317 -------------------------IY---------V--------------------------------SDMCCSKIEVY 330 (433)
T ss_dssp -------------------------EE---------E--------------------------------EETTTTEEEEE
T ss_pred -------------------------EE---------E--------------------------------EecCCCEEEEE
Confidence 00 0 12467899999
Q ss_pred ECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC---------------CCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 371 DIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI---------------HGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 371 D~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~---------------dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
|+.+++.+..+. |...+.+++|+|+|++|++++. ||+ |++||+. ++
T Consensus 331 d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~-v~~~d~~-------~~---------- 391 (433)
T 3bws_A 331 DLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK-VYVIDTT-------TD---------- 391 (433)
T ss_dssp ETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE-EEEEETT-------TT----------
T ss_pred ECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceE-EEEEECC-------CC----------
Confidence 999998888776 6778999999999999999887 455 8999985 23
Q ss_pred ceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeC-CCeEEEEEcCC
Q 046828 436 SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSS-RGTCHIFVLTP 480 (627)
Q Consensus 436 ~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~-dgTvhIw~i~~ 480 (627)
..+..+ .+. ..+.+++|+||+++|++++. |++|+||+++.
T Consensus 392 --~~~~~~-~~~--~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 392 --TVKEFW-EAG--NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp --EEEEEE-ECS--SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred --cEEEEe-cCC--CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 133333 332 35899999999999998875 99999999874
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.78 E-value=2.8e-16 Score=164.84 Aligned_cols=232 Identities=14% Similarity=0.093 Sum_probs=160.6
Q ss_pred eEEEEe-ccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCc
Q 046828 82 HVLLLG-YSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRD 160 (627)
Q Consensus 82 ~vl~~G-y~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~ 160 (627)
.+++.| .++.+++||++... +...+..+. .+..+.+.|.. ..|++...
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~-~~~~~~~~~-~~~~~~~s~dg-------------~~l~~~~~---------------- 51 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNK-VTATIPVGS-NPMGAVISPDG-------------TKVYVANA---------------- 51 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTE-EEEEEECSS-SEEEEEECTTS-------------SEEEEEEG----------------
T ss_pred EEEEEcCCCCEEEEEECCCCe-EEEEeecCC-CcceEEECCCC-------------CEEEEECC----------------
Confidence 445544 57789999998754 344444443 45677776542 45544320
Q ss_pred ccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe--CCeEEEEeCCCCceeEEEEc
Q 046828 161 GLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL--AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 161 ~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~--~~~I~i~D~~t~e~~~tl~~ 236 (627)
.+++|++||+++++.+.++..+..|.++++++ +.|+++. ++.|++||+.+++.+..+..
T Consensus 52 -----------------~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~ 114 (391)
T 1l0q_A 52 -----------------HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT 114 (391)
T ss_dssp -----------------GGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred -----------------CCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC
Confidence 12679999999999999999888999999997 5665544 46899999999988777654
Q ss_pred CCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcce
Q 046828 237 YPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGL 316 (627)
Q Consensus 237 ~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl 316 (627)
+.. . ..+++.++... +
T Consensus 115 ~~~--------------~-------~~~~~s~dg~~-------------------------------------------l 130 (391)
T 1l0q_A 115 GKS--------------P-------LGLALSPDGKK-------------------------------------------L 130 (391)
T ss_dssp SSS--------------E-------EEEEECTTSSE-------------------------------------------E
T ss_pred CCC--------------c-------ceEEECCCCCE-------------------------------------------E
Confidence 321 1 22333332100 0
Q ss_pred eecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCC
Q 046828 317 INLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRS 396 (627)
Q Consensus 317 ~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspd 396 (627)
.+ .+..++.|++||+.+++.+..+..|. .+..++|+|+
T Consensus 131 ---------~~--------------------------------~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~d 168 (391)
T 1l0q_A 131 ---------YV--------------------------------TNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPD 168 (391)
T ss_dssp ---------EE--------------------------------EETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTT
T ss_pred ---------EE--------------------------------EeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCC
Confidence 00 12357899999999999988888764 5699999999
Q ss_pred CCEE-EEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe---CCCe
Q 046828 397 GTLL-VTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS---SRGT 472 (627)
Q Consensus 397 G~lL-aTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S---~dgT 472 (627)
|++| ++++.+|+ |++||+. ++ ..+..+ .. ...+.+++|+||+++|++++ .+++
T Consensus 169 g~~l~~~~~~~~~-v~~~d~~-------~~------------~~~~~~-~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~ 225 (391)
T 1l0q_A 169 GTKVYVANFDSMS-ISVIDTV-------TN------------SVIDTV-KV--EAAPSGIAVNPEGTKAYVTNVDKYFNT 225 (391)
T ss_dssp SSEEEEEETTTTE-EEEEETT-------TT------------EEEEEE-EC--SSEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred CCEEEEEeCCCCE-EEEEECC-------CC------------eEEEEE-ec--CCCccceEECCCCCEEEEEecCcCCCc
Confidence 9988 56677776 8999985 22 133333 22 23589999999999999998 6999
Q ss_pred EEEEEcCCCCCeeecccc
Q 046828 473 CHIFVLTPFGGETVLQIQ 490 (627)
Q Consensus 473 vhIw~i~~~gg~~~~~~h 490 (627)
|++|++........+..|
T Consensus 226 v~~~d~~~~~~~~~~~~~ 243 (391)
T 1l0q_A 226 VSMIDTGTNKITARIPVG 243 (391)
T ss_dssp EEEEETTTTEEEEEEECC
T ss_pred EEEEECCCCeEEEEEecC
Confidence 999999765433334333
No 112
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.78 E-value=1.7e-16 Score=162.06 Aligned_cols=182 Identities=13% Similarity=0.089 Sum_probs=130.6
Q ss_pred CcEEEEEECCCCc-----eEEEEec-CCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcC
Q 046828 179 PTAVRFYSLRSHN-----YVHVLRF-RSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSG 249 (627)
Q Consensus 179 ~~tV~lwdl~t~~-----~V~tL~f-~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~ 249 (627)
+++|+|||+.+.+ ++++++. ...|.++.|++ ++|+++. ++.|++|+....+.......+...
T Consensus 60 D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~--------- 130 (340)
T 4aow_A 60 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD--------- 130 (340)
T ss_dssp TSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC---------
T ss_pred CCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc---------
Confidence 3679999998754 4566764 46999999997 6777765 568999999988766655443221
Q ss_pred cccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEee
Q 046828 250 VNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSR 329 (627)
Q Consensus 250 ~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~ 329 (627)
. ..+.+......
T Consensus 131 ----~-------~~~~~~~~~~~--------------------------------------------------------- 142 (340)
T 4aow_A 131 ----V-------LSVAFSSDNRQ--------------------------------------------------------- 142 (340)
T ss_dssp ----E-------EEEEECTTSSC---------------------------------------------------------
T ss_pred ----e-------eEEEEeecCcc---------------------------------------------------------
Confidence 0 01112211000
Q ss_pred eeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeE-EEEeccCCCCeEEEEECCCC--CEEEEEeCC
Q 046828 330 YYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSV-ISQFRAHTSPISALCFDRSG--TLLVTASIH 406 (627)
Q Consensus 330 y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~-l~~~~aH~~~Is~laFspdG--~lLaTaS~d 406 (627)
+ ..+..||.+++||+..... ...+.+|...|..++|++++ .++++++.|
T Consensus 143 ------------------------l----~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d 194 (340)
T 4aow_A 143 ------------------------I----VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 194 (340)
T ss_dssp ------------------------E----EEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred ------------------------c----eeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCC
Confidence 0 1235789999999987654 44567899999999999875 578999999
Q ss_pred CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeee
Q 046828 407 GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETV 486 (627)
Q Consensus 407 Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~ 486 (627)
++ |++||+. ++ ..+..+ .+++. .|.+|+|+||+++|++++.||+|+||++........
T Consensus 195 ~~-i~i~d~~-------~~------------~~~~~~-~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 252 (340)
T 4aow_A 195 KL-VKVWNLA-------NC------------KLKTNH-IGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT 252 (340)
T ss_dssp SC-EEEEETT-------TT------------EEEEEE-CCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred CE-EEEEECC-------CC------------ceeeEe-cCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee
Confidence 98 8999986 22 133333 67654 599999999999999999999999999986544433
Q ss_pred c
Q 046828 487 L 487 (627)
Q Consensus 487 ~ 487 (627)
+
T Consensus 253 ~ 253 (340)
T 4aow_A 253 L 253 (340)
T ss_dssp E
T ss_pred e
Confidence 3
No 113
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.77 E-value=4.8e-17 Score=164.53 Aligned_cols=237 Identities=16% Similarity=0.176 Sum_probs=158.6
Q ss_pred CcEEEEEECCCCceEEEEecC---CeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFR---STVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNI 252 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~---s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~ 252 (627)
+++|+|||+++++.+++++++ ..|.+|++++ ++|++|. +++|++||+.+++.+.++.+|...
T Consensus 44 D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~------------ 111 (318)
T 4ggc_A 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR------------ 111 (318)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC------------
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccce------------
Confidence 377999999999999999753 3799999997 7888876 558999999999999999887653
Q ss_pred ccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 253 GYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 253 ~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
...++..++.|+.++.+..+..+... ....... ...++........+
T Consensus 112 -~~~~~~~~~~l~s~~~~~~~~~~~~~----------------------------~~~~~~~--~~~~~~~~~~~~~~-- 158 (318)
T 4ggc_A 112 -VGSLSWNSYILSSGSRSGHIHHHDVR----------------------------VAEHHVA--TLSGHSQEVCGLRW-- 158 (318)
T ss_dssp -EEEEEEETTEEEEEETTSEEEEEETT----------------------------SSSCEEE--EEECCSSCEEEEEE--
T ss_pred -EEEeecCCCEEEEEecCCceEeeecC----------------------------CCceeEE--EEcCccCceEEEEE--
Confidence 34466677888888765433211100 0000000 00111111111000
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe----EEEEeccCCCCeEEEEECCCCCEE---EEEeC
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS----VISQFRAHTSPISALCFDRSGTLL---VTASI 405 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~----~l~~~~aH~~~Is~laFspdG~lL---aTaS~ 405 (627)
.++ +.. ...+..||.|+|||+.+++ .+.....|..+|.+++|+|++..+ ++++.
T Consensus 159 --~~~--------------~~~---l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 219 (318)
T 4ggc_A 159 --APD--------------GRH---LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 219 (318)
T ss_dssp --CTT--------------SSE---EEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTT
T ss_pred --cCC--------------CCE---EEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCC
Confidence 011 111 1245689999999998764 355667788999999999987633 46677
Q ss_pred CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe--CCCeEEEEEcCCCCC
Q 046828 406 HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS--SRGTCHIFVLTPFGG 483 (627)
Q Consensus 406 dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S--~dgTvhIw~i~~~gg 483 (627)
+++ |+|||.. . +. ..... . ....|..++|+++++.+++++ .|++|+||++.....
T Consensus 220 ~~~-i~lwd~~-~------~~------------~~~~~-~--~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~ 276 (318)
T 4ggc_A 220 DRH-IRIWNVC-S------GA------------CLSAV-D--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 276 (318)
T ss_dssp TCE-EEEEETT-T------CC------------EEEEE-E--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred CCE-EEEEecc-c------cc------------ccccc-c--ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE
Confidence 776 8999985 1 11 22222 2 223599999999999998766 799999999988777
Q ss_pred eeecccccccccCCCCCCC
Q 046828 484 ETVLQIQNSHVDRPTLSPV 502 (627)
Q Consensus 484 ~~~~~~h~s~v~~~~~~p~ 502 (627)
...+..|...+....+.|.
T Consensus 277 ~~~l~gH~~~V~~l~~spd 295 (318)
T 4ggc_A 277 VAELKGHTSRVLSLTMSPD 295 (318)
T ss_dssp EEEECCCSSCEEEEEECTT
T ss_pred EEEEcCCCCCEEEEEEcCC
Confidence 7788888776554444443
No 114
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.77 E-value=4e-17 Score=174.98 Aligned_cols=255 Identities=16% Similarity=0.165 Sum_probs=172.2
Q ss_pred CcEEEEEECCCCceEEEEecC---CeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFR---STVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNI 252 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~---s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~ 252 (627)
+++|+|||+.+++.++.++++ ..|.+|+|++ ++||+|. ++.|+|||+.+++.+.++.+|...
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~------------ 191 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR------------ 191 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC------------
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc------------
Confidence 478999999999999988753 4799999997 7888886 558999999999999998887654
Q ss_pred ccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 253 GYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 253 ~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
...++..++.|+.++.+..+.++... ........+ .++........+
T Consensus 192 -v~~~s~~~~~l~sgs~d~~i~~~d~~----------------------------~~~~~~~~~--~~h~~~~~~~~~-- 238 (420)
T 4gga_A 192 -VGSLSWNSYILSSGSRSGHIHHHDVR----------------------------VAEHHVATL--SGHSQEVCGLRW-- 238 (420)
T ss_dssp -EEEEEEETTEEEEEETTSEEEEEETT----------------------------SSSCEEEEE--ECCSSCEEEEEE--
T ss_pred -eEEEeeCCCEEEEEeCCCceeEeeec----------------------------ccceeeEEe--cccccceeeeee--
Confidence 45677888999998876554332110 000000000 011111000000
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCe----EEEEeccCCCCeEEEEECCCC-CEEEEE--eC
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRS----VISQFRAHTSPISALCFDRSG-TLLVTA--SI 405 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~----~l~~~~aH~~~Is~laFspdG-~lLaTa--S~ 405 (627)
.|+ |.. ...+..||.|+|||..+++ .+..+..|..+|.+++|+|++ .+|+++ +.
T Consensus 239 --~~~--------------g~~---l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~ 299 (420)
T 4gga_A 239 --APD--------------GRH---LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 299 (420)
T ss_dssp --CTT--------------SSE---EEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT
T ss_pred --cCC--------------CCe---eeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecC
Confidence 111 111 1245689999999998764 466788899999999999965 566654 57
Q ss_pred CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe--CCCeEEEEEcCCCCC
Q 046828 406 HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS--SRGTCHIFVLTPFGG 483 (627)
Q Consensus 406 dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S--~dgTvhIw~i~~~gg 483 (627)
||+ |+|||+. ++ ..+..+. . ...|.++.|+++++.|++++ .|++|+||++.....
T Consensus 300 D~~-I~iwd~~-------t~------------~~~~~~~-~--~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~ 356 (420)
T 4gga_A 300 DRH-IRIWNVC-------SG------------ACLSAVD-A--HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 356 (420)
T ss_dssp TCE-EEEEETT-------TT------------EEEEEEE-C--SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred CCE-EEEEeCC-------cc------------ccceeec-c--ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE
Confidence 887 8999986 33 2444443 2 23589999999999999876 799999999988777
Q ss_pred eeecccccccccCCCCCCCccCCCCCCCccccccCCC
Q 046828 484 ETVLQIQNSHVDRPTLSPVLSVPWWSSPSFMINQPSF 520 (627)
Q Consensus 484 ~~~~~~h~s~v~~~~~~p~~~~~~~~~~~~s~~q~~~ 520 (627)
...+..|...+....+.|...+...-+.+-++..|++
T Consensus 357 v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 357 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 7788889876655445554433333333444555554
No 115
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=3.9e-17 Score=193.77 Aligned_cols=175 Identities=12% Similarity=0.062 Sum_probs=130.2
Q ss_pred CcEEEEEECCCCceEEEEecCCeEEEEEecC-cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccce
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP-RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGP 256 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~-~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~ 256 (627)
+++|+|||..+.+.+..+.+..+|.+|+|++ ++|+++. ++.|+|||+.+++.+.++. ++.+ +..
T Consensus 38 Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~-------------V~~ 103 (902)
T 2oaj_A 38 TGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGK-------------ITS 103 (902)
T ss_dssp TSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEE-CSSC-------------EEE
T ss_pred CCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEc-CCCC-------------EEE
Confidence 3789999999998888777778999999997 6566665 5689999999999887774 3221 222
Q ss_pred eeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccC
Q 046828 257 MAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIP 336 (627)
Q Consensus 257 iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p 336 (627)
+ ++.++... +
T Consensus 104 v-------~~sp~g~~---------------------------------------l------------------------ 113 (902)
T 2oaj_A 104 I-------DTDASLDW---------------------------------------M------------------------ 113 (902)
T ss_dssp E-------ECCTTCSE---------------------------------------E------------------------
T ss_pred E-------EECCCCCE---------------------------------------E------------------------
Confidence 3 33321100 0
Q ss_pred CCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEE-----------EEeccCCCCeEEEEECCC-CCEEEEEe
Q 046828 337 DGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVI-----------SQFRAHTSPISALCFDRS-GTLLVTAS 404 (627)
Q Consensus 337 ~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l-----------~~~~aH~~~Is~laFspd-G~lLaTaS 404 (627)
..+..||.|++||+.+++.. ..+++|..+|.+|+|+|+ +.+|++++
T Consensus 114 ----------------------~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~ 171 (902)
T 2oaj_A 114 ----------------------LIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY 171 (902)
T ss_dssp ----------------------EEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred ----------------------EEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe
Confidence 02346899999999988753 234679999999999996 57999999
Q ss_pred CCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecC-----------------CcCcEEEEEEccCCCEEEEE
Q 046828 405 IHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGM-----------------TSAVIQDICFSHYSQWIAIV 467 (627)
Q Consensus 405 ~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~-----------------t~a~I~sIaFSpDg~~Las~ 467 (627)
.||+ | |||+. .+ ..+..+ .++ ....|.+++|+|||++||++
T Consensus 172 ~dg~-v-lWd~~-------~~------------~~~~~~-~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg 229 (902)
T 2oaj_A 172 EYVT-L-TYSLV-------EN------------EIKQSF-IYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI 229 (902)
T ss_dssp SSCE-E-EEETT-------TT------------EEEEEE-CCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE
T ss_pred CCCc-E-EEECC-------CC------------ceEEEE-ecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEE
Confidence 9997 7 99986 22 123333 222 12359999999999999999
Q ss_pred eCCCeEEEEEcCCC
Q 046828 468 SSRGTCHIFVLTPF 481 (627)
Q Consensus 468 S~dgTvhIw~i~~~ 481 (627)
+.||+|+||++...
T Consensus 230 s~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 230 HEDNSLVFWDANSG 243 (902)
T ss_dssp ETTCCEEEEETTTC
T ss_pred ECCCeEEEEECCCC
Confidence 99999999999763
No 116
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.76 E-value=6.2e-17 Score=172.36 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=82.2
Q ss_pred CCCeEEEEECCC-CeEEE-------EeccCCCCeEEEEECCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCC
Q 046828 363 IAGMVVVKDIVS-RSVIS-------QFRAHTSPISALCFDRSG-TLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDW 433 (627)
Q Consensus 363 ~dG~V~IwD~~s-~~~l~-------~~~aH~~~Is~laFspdG-~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~ 433 (627)
.||.|+|||+.+ .+.+. .+..|...|.+++|+|+| .+|++++.||+ |+|||+. . +...
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~-~------~~~~----- 262 (447)
T 3dw8_B 196 DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCDMR-A------SALC----- 262 (447)
T ss_dssp CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEETT-T------CSSS-----
T ss_pred CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEECc-C------Cccc-----
Confidence 699999999994 44444 367899999999999999 99999999998 8999986 2 2100
Q ss_pred CCceeEEEEEeecCCc-----------CcEEEEEEccCCCEEEEEeCCCeEEEEEcCC-CCCeeeccccc
Q 046828 434 TSSHVHLYKLHRGMTS-----------AVIQDICFSHYSQWIAIVSSRGTCHIFVLTP-FGGETVLQIQN 491 (627)
Q Consensus 434 ~~~~~~l~~l~rG~t~-----------a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~-~gg~~~~~~h~ 491 (627)
. ..+..+ .++.. ..|.+++|+||+++|++++. ++|+||++.. ......+..|.
T Consensus 263 -~--~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~ 327 (447)
T 3dw8_B 263 -D--RHSKLF-EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHE 327 (447)
T ss_dssp -C--TTCEEE-CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCG
T ss_pred -c--ceeeEe-ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccc
Confidence 0 001222 33332 26999999999999999999 9999999986 33344455553
No 117
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.76 E-value=9.7e-17 Score=164.75 Aligned_cols=275 Identities=12% Similarity=0.068 Sum_probs=170.3
Q ss_pred ecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCC
Q 046828 96 DVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNV 175 (627)
Q Consensus 96 dv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~ 175 (627)
+..+.. ..+++..|++.|.++.+.|... + ..+|+...
T Consensus 25 ~~~~~~-~~~~~~~h~~~v~~~~~~~~~~-----~-----g~~l~~~~-------------------------------- 61 (368)
T 3mmy_A 25 NHNPMK-DIEVTSSPDDSIGCLSFSPPTL-----P-----GNFLIAGS-------------------------------- 61 (368)
T ss_dssp SSCTTC-CEECSSCCSSCEEEEEECCTTS-----S-----SEEEEEEE--------------------------------
T ss_pred CCCCcc-eeEeccCCCCceEEEEEcCCCC-----C-----ceEEEEEC--------------------------------
Confidence 344433 3567788999999999987520 0 14554322
Q ss_pred CcCCcEEEEEECCC-CceE-EEEe-cCCeEEEEEecC--cEEEEEe-CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcC
Q 046828 176 AMSPTAVRFYSLRS-HNYV-HVLR-FRSTVYMVRCSP--RIVAVGL-AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSG 249 (627)
Q Consensus 176 ~~~~~tV~lwdl~t-~~~V-~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~ 249 (627)
.+++|+|||+++ ++.+ ..+. +...|.++++++ ++|+++. ++.|++||+.+++.+. +..|..+
T Consensus 62 --~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~--------- 129 (368)
T 3mmy_A 62 --WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAP--------- 129 (368)
T ss_dssp --TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSC---------
T ss_pred --CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCc---------
Confidence 136799999998 6555 6666 566999999987 5777775 5689999999998665 4445443
Q ss_pred cccccceeeE--cC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCccee
Q 046828 250 VNIGYGPMAV--GP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYK 325 (627)
Q Consensus 250 ~~~~~~~iAl--~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~ 325 (627)
+..+++ .+ ++|+.++.+..+.+|..... + ....+. .+....
T Consensus 130 ----v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----------------------------~-~~~~~~--~~~~~~ 174 (368)
T 3mmy_A 130 ----VKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS----------------------------N-PMMVLQ--LPERCY 174 (368)
T ss_dssp ----EEEEEEEECSSCEEEEEEETTSEEEEECSSCS----------------------------S-CSEEEE--CSSCEE
T ss_pred ----eEEEEEEeCCCCCEEEEccCCCcEEEEECCCC----------------------------c-EEEEEe--cCCCce
Confidence 445665 44 67888877666554421100 0 000000 000000
Q ss_pred EEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEE-ec-cCCCCeEEEEECCCCCE----
Q 046828 326 TLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQ-FR-AHTSPISALCFDRSGTL---- 399 (627)
Q Consensus 326 ~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~-~~-aH~~~Is~laFspdG~l---- 399 (627)
.+.. ....+ ..+..++.+.+||+........ +. .+...+.++++.+++..
T Consensus 175 ~~~~--------------------~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (368)
T 3mmy_A 175 CADV--------------------IYPMA----VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTG 230 (368)
T ss_dssp EEEE--------------------ETTEE----EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEE
T ss_pred EEEe--------------------cCCee----EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCe
Confidence 0000 00000 1245688999999987654332 22 34566777877776665
Q ss_pred EEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC-----------cEEEEEEccCCCEEEEEe
Q 046828 400 LVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA-----------VIQDICFSHYSQWIAIVS 468 (627)
Q Consensus 400 LaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a-----------~I~sIaFSpDg~~Las~S 468 (627)
|++++.+|+ |+|||+.... . ...+..+ +++... .|.+++|+||+++|++++
T Consensus 231 ~~~~~~dg~-i~i~~~~~~~-----~-----------~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 292 (368)
T 3mmy_A 231 FALGSIEGR-VAIHYINPPN-----P-----------AKDNFTF-KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292 (368)
T ss_dssp EEEEETTSE-EEEEESSCSC-----H-----------HHHSEEE-ECSEEC----CCCEEECCEEEEEECTTTCCEEEEE
T ss_pred EEEecCCCc-EEEEecCCCC-----c-----------cccceee-eeeecccccccccccccceEEEEEecCCCEEEEEc
Confidence 999999997 8999986211 0 0012222 233221 499999999999999999
Q ss_pred CCCeEEEEEcCCCCCeeecccccccccCCCCCCC
Q 046828 469 SRGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPV 502 (627)
Q Consensus 469 ~dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~ 502 (627)
.||+|+||++........+..|...+....+.|.
T Consensus 293 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 326 (368)
T 3mmy_A 293 SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHN 326 (368)
T ss_dssp TTSCEEEEETTTTEEEEECCCCSSCEEEEEECTT
T ss_pred cCCeEEEEECCCCcEEEEecCCCCCceEEEECCC
Confidence 9999999999876555566666654443334443
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.7e-17 Score=171.22 Aligned_cols=105 Identities=16% Similarity=0.211 Sum_probs=83.5
Q ss_pred CCCCCeEEEEECCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 361 TDIAGMVVVKDIVSRSVISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
++.||.|+|||+.+++.+..+. .|..+|.+++|+|+|.+||+|+.||+ |+|||+. ++. .
T Consensus 145 ~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~-i~iwd~~-------~~~------------~ 204 (343)
T 3lrv_A 145 ADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI-LDVYNLS-------SPD------------Q 204 (343)
T ss_dssp EETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSC-EEEEESS-------CTT------------S
T ss_pred EeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCE-EEEEECC-------CCC------------C
Confidence 4579999999999999877775 45668999999999999999999998 8999996 221 2
Q ss_pred E-EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeec
Q 046828 440 L-YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVL 487 (627)
Q Consensus 440 l-~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~ 487 (627)
+ ..+..+|. ..|.+|+|+||+++|++++++ +|+||++........+
T Consensus 205 ~~~~~~~~h~-~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~ 251 (343)
T 3lrv_A 205 ASSRFPVDEE-AKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAY 251 (343)
T ss_dssp CCEECCCCTT-SCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSS
T ss_pred CccEEeccCC-CCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceee
Confidence 2 33432254 469999999999999999954 9999999875543333
No 119
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.75 E-value=1.1e-16 Score=172.50 Aligned_cols=101 Identities=16% Similarity=0.249 Sum_probs=82.6
Q ss_pred CCCCCeEEEEECCCC---eEEEEeccCCCCeEEEEECCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 361 TDIAGMVVVKDIVSR---SVISQFRAHTSPISALCFDRSGT-LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~---~~l~~~~aH~~~Is~laFspdG~-lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
+..+|.|+|||+.++ +.+..+.+|..+|.+|+|+|+|. +|++++.||+ |+|||+. .. +
T Consensus 250 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~-~~-----~----------- 311 (430)
T 2xyi_A 250 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDLR-NL-----K----------- 311 (430)
T ss_dssp EETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSE-EEEEETT-CT-----T-----------
T ss_pred EeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCe-EEEEeCC-CC-----C-----------
Confidence 357899999999987 57788899999999999999997 7999999998 8999986 21 1
Q ss_pred eeEEEEEeecCCcCcEEEEEEccCCC-EEEEEeCCCeEEEEEcCCCC
Q 046828 437 HVHLYKLHRGMTSAVIQDICFSHYSQ-WIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFSpDg~-~Las~S~dgTvhIw~i~~~g 482 (627)
..+..+ .++. ..|.+|+|+|+++ +|++++.||+|+||++...+
T Consensus 312 -~~~~~~-~~h~-~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 312 -LKLHSF-ESHK-DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp -SCSEEE-ECCS-SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred -CCeEEe-ecCC-CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 123333 3443 4599999999995 69999999999999998744
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2e-16 Score=183.56 Aligned_cols=210 Identities=14% Similarity=0.195 Sum_probs=146.1
Q ss_pred EEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEE
Q 046828 105 ELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRF 184 (627)
Q Consensus 105 ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~l 184 (627)
.++..|.++|.++.+.|.. .+|+..+ .+++|+|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg-------------~~latg~----------------------------------~dg~I~v 35 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYG-------------KRLATCS----------------------------------SDKTIKI 35 (753)
T ss_dssp -----CCCCEEEECCCSSS-------------CCEEEEE----------------------------------TTTEEEE
T ss_pred eecccCcceeEEEEECCCC-------------CeEEEEE----------------------------------CCCcEEE
Confidence 4667899999999887643 4555432 1377999
Q ss_pred EECC--CCceEEEEe-cCCeEEEEEec----CcEEEEEe-CCeEEEEeCCCCc--eeEEEEcCCCCCCCCCCCcCccccc
Q 046828 185 YSLR--SHNYVHVLR-FRSTVYMVRCS----PRIVAVGL-AAQIYCFDALTLE--SKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 185 wdl~--t~~~V~tL~-f~s~V~sV~~s----~~~LaV~~-~~~I~i~D~~t~e--~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
||+. +++.+.++. +..+|.+|+++ .++|+++. ++.|++||+.+++ ....+..|..+ +
T Consensus 36 wd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~-------------V 102 (753)
T 3jro_A 36 FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS-------------V 102 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------------E
T ss_pred EecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCC-------------e
Confidence 9998 556777887 55699999997 35777775 5689999999886 44444444332 2
Q ss_pred ceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccc
Q 046828 255 GPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDF 334 (627)
Q Consensus 255 ~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~ 334 (627)
.. +++.++.. +..
T Consensus 103 ~~-------v~~sp~~~--------------------------~~~---------------------------------- 115 (753)
T 3jro_A 103 NS-------VQWAPHEY--------------------------GPL---------------------------------- 115 (753)
T ss_dssp EE-------EEECCGGG--------------------------CSE----------------------------------
T ss_pred EE-------EEECCCCC--------------------------CCE----------------------------------
Confidence 22 33332100 000
Q ss_pred cCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCC--eEEEEeccCCCCeEEEEECC-------------CCCE
Q 046828 335 IPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSR--SVISQFRAHTSPISALCFDR-------------SGTL 399 (627)
Q Consensus 335 ~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~--~~l~~~~aH~~~Is~laFsp-------------dG~l 399 (627)
+ ..++.||.|+|||+.++ .....+..|..+|.+++|+| +|.+
T Consensus 116 -------------------l----~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~ 172 (753)
T 3jro_A 116 -------------------L----LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK 172 (753)
T ss_dssp -------------------E----EEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCC
T ss_pred -------------------E----EEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCE
Confidence 0 12357899999999887 34556789999999999999 5999
Q ss_pred EEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccC---CCEEEEEeCCCeEEEE
Q 046828 400 LVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHY---SQWIAIVSSRGTCHIF 476 (627)
Q Consensus 400 LaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpD---g~~Las~S~dgTvhIw 476 (627)
|++++.||+ |+|||+. . +. .. ..+.....+|. ..|.+++|+|| +++|++++.||+|+||
T Consensus 173 l~sgs~dg~-I~iwd~~-~------~~--------~~-~~~~~~~~~h~-~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw 234 (753)
T 3jro_A 173 FVTGGADNL-VKIWKYN-S------DA--------QT-YVLESTLEGHS-DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234 (753)
T ss_dssp EEEEETTSC-EEEEEEE-T------TT--------TE-EEEEEEECCCS-SCEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred EEEEECCCe-EEEEecc-C------Cc--------cc-ceeeeeecCCC-CcEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence 999999998 8999986 1 11 00 12222335654 45999999999 9999999999999999
Q ss_pred EcCCCC
Q 046828 477 VLTPFG 482 (627)
Q Consensus 477 ~i~~~g 482 (627)
++....
T Consensus 235 d~~~~~ 240 (753)
T 3jro_A 235 TQDNEQ 240 (753)
T ss_dssp EESSSS
T ss_pred cCCCCC
Confidence 998753
No 121
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.4e-15 Score=162.66 Aligned_cols=246 Identities=8% Similarity=-0.050 Sum_probs=166.6
Q ss_pred CCCcEEEEEeeccCCCCCCCCeE-EEEeccCcEEEEecC--CCCCceEEee--ecCCceEEEEEeeCCCCCCCCCCcCCC
Q 046828 61 LKDQVLWSSFDKLELSPSSFKHV-LLLGYSNGFQVLDVE--DATNVSELVS--RRDDPVTFLQMQPLPAKSDGQEGFRNS 135 (627)
Q Consensus 61 ~~d~V~wa~Fd~l~~~~~~~~~v-l~~Gy~~G~qVWdv~--~~~~~~ells--~~dG~V~~v~~lp~p~~~~~~D~f~~~ 135 (627)
+.+.|..+.|.. ..+.+ ++.+.++.++|||+. ... ....+. .+.+.|..+.+.|..
T Consensus 101 ~~~~v~~~~~s~------d~~~l~~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~------------ 161 (450)
T 2vdu_B 101 IYSYIRNLRLTS------DESRLIACADSDKSLLVFDVDKTSKN-VLKLRKRFCFSKRPNAISIAEDD------------ 161 (450)
T ss_dssp CCCCEEEEEECT------TSSEEEEEEGGGTEEEEEEECSSSSS-CEEEEEEEECSSCEEEEEECTTS------------
T ss_pred cCCceEEEEEcC------CCCEEEEEECCCCeEEEEECcCCCCc-eeeeeecccCCCCceEEEEcCCC------------
Confidence 445688888863 23555 455578889999999 543 455554 455778888887642
Q ss_pred CCEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEE----EEe-cCCeEEEEEecCc
Q 046828 136 HPLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVH----VLR-FRSTVYMVRCSPR 210 (627)
Q Consensus 136 rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~----tL~-f~s~V~sV~~s~~ 210 (627)
.+|++.. .++.|.+|++.+++... ++. +...|.+|++++.
T Consensus 162 -~~l~~~~----------------------------------~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 206 (450)
T 2vdu_B 162 -TTVIIAD----------------------------------KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKD 206 (450)
T ss_dssp -SEEEEEE----------------------------------TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEEC
T ss_pred -CEEEEEe----------------------------------CCCcEEEEecCCcccccccceeeecccCceEEEEEcCC
Confidence 4555432 12679999999887654 555 5569999999876
Q ss_pred -----EEEEEe-CCeEEEEeCCCCceeEEEE-cCCCCCCCCCCCcCcccccceeeE-cCceEEEcCCCCCcCCCCccCCC
Q 046828 211 -----IVAVGL-AAQIYCFDALTLESKFSVL-TYPVPHFGGQGTSGVNIGYGPMAV-GPRWLAYASNNPLLPNTGRLSPQ 282 (627)
Q Consensus 211 -----~LaV~~-~~~I~i~D~~t~e~~~tl~-~~p~~~~~~~g~~~~~~~~~~iAl-~~r~LAy~~~~~~v~~~gr~~~q 282 (627)
+|+++. ++.|++||+.+++.+.++. +|..+ +..+++ .+++|++
T Consensus 207 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~-------------v~~~~~sd~~~l~s---------------- 257 (450)
T 2vdu_B 207 SDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF-------------VSSICCGKDYLLLS---------------- 257 (450)
T ss_dssp TTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC-------------EEEEEECSTTEEEE----------------
T ss_pred CCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc-------------eEEEEECCCCEEEE----------------
Confidence 777775 5589999999998877743 44332 222222 1222222
Q ss_pred CCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCC
Q 046828 283 SLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTD 362 (627)
Q Consensus 283 ~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~ 362 (627)
++
T Consensus 258 ------------------------------------------------------------------------------~~ 259 (450)
T 2vdu_B 258 ------------------------------------------------------------------------------AG 259 (450)
T ss_dssp ------------------------------------------------------------------------------EE
T ss_pred ------------------------------------------------------------------------------Ee
Confidence 24
Q ss_pred CCCeEEEEECCCCeEEEEeccC-------------------------CCCeEEEEECCCCCEEEEEe-CCCCEEEEEeCC
Q 046828 363 IAGMVVVKDIVSRSVISQFRAH-------------------------TSPISALCFDRSGTLLVTAS-IHGNNINIFRIM 416 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH-------------------------~~~Is~laFspdG~lLaTaS-~dGt~I~Vwdi~ 416 (627)
.||.|+|||+.+++.+..+..| ...|..|+|+|+|++|++++ .+|+ |+||++.
T Consensus 260 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~-i~iw~~~ 338 (450)
T 2vdu_B 260 GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC-IIILEMS 338 (450)
T ss_dssp SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE-EEEEEEC
T ss_pred CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe-EEEEEec
Confidence 6789999999999988888632 45799999999999999999 7776 8999982
Q ss_pred CCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeC------CCeEEEEEcCCCCCee
Q 046828 417 PSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSS------RGTCHIFVLTPFGGET 485 (627)
Q Consensus 417 p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~------dgTvhIw~i~~~gg~~ 485 (627)
... .+. ...+..+ .++ ..|.+++|+|++.++++.+. +..|.||.++..++.-
T Consensus 339 ~~~----~~~----------l~~~~~~-~~~--~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~ 396 (450)
T 2vdu_B 339 EKQ----KGD----------LALKQII-TFP--YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSF 396 (450)
T ss_dssp SSS----TTC----------EEEEEEE-ECS--SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEE
T ss_pred cCC----CCc----------eeeccEe-ccC--CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeE
Confidence 010 111 1133333 444 46999999997666655554 4568999998766554
No 122
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.72 E-value=4.3e-16 Score=164.94 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=47.4
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCe-EEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPI-SALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~I-s~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
++.||+|+|||+.+++.+.+|++|...+ .+++|+|||++||+||.||+ |||||+
T Consensus 301 gS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T-IklWd~ 355 (356)
T 2w18_A 301 ILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN-IFVYHY 355 (356)
T ss_dssp EETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC-EEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc-EEEecC
Confidence 4578999999999999999999998764 56999999999999999998 899995
No 123
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.71 E-value=5.3e-15 Score=159.58 Aligned_cols=246 Identities=17% Similarity=0.130 Sum_probs=165.6
Q ss_pred CeEEEEecc------CcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCccee
Q 046828 81 KHVLLLGYS------NGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVH 154 (627)
Q Consensus 81 ~~vl~~Gy~------~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~ 154 (627)
.+++.++.+ +.+++||++. +++ ..+..|.+.|..+.+.|.- ..|+.+..|.
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g-~~~-~~l~~~~~~v~~~~~Spdg-------------~~la~~s~~~-------- 200 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDG-YNQ-FVVHRSPQPLMSPAWSPDG-------------SKLAYVTFES-------- 200 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTS-CSC-EEEEEESSCEEEEEECTTS-------------SEEEEEECTT--------
T ss_pred CEEEEEEecCCCCccceEEEEcCCC-CCC-EEEeCCCCcceeeEEcCCC-------------CEEEEEEecC--------
Confidence 566666654 6799999974 444 4555678888888887643 5566654211
Q ss_pred eeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEE-e-C--CeEEEEeCCCC
Q 046828 155 VHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVG-L-A--AQIYCFDALTL 228 (627)
Q Consensus 155 ~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~-~-~--~~I~i~D~~t~ 228 (627)
...+|++||+++++......+...+.+++|++ +.|+.+ . + .+|++||+.++
T Consensus 201 -----------------------~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~ 257 (415)
T 2hqs_A 201 -----------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG 257 (415)
T ss_dssp -----------------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred -----------------------CCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC
Confidence 01579999999999876555778999999997 667644 3 2 35999999998
Q ss_pred ceeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhh
Q 046828 229 ESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAV 306 (627)
Q Consensus 229 e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~ 306 (627)
+. ..+..+... ...++++| ++|++.+..
T Consensus 258 ~~-~~l~~~~~~-------------~~~~~~spdg~~l~~~s~~------------------------------------ 287 (415)
T 2hqs_A 258 QI-RQVTDGRSN-------------NTEPTWFPDSQNLAFTSDQ------------------------------------ 287 (415)
T ss_dssp CE-EECCCCSSC-------------EEEEEECTTSSEEEEEECT------------------------------------
T ss_pred CE-EeCcCCCCc-------------ccceEECCCCCEEEEEECC------------------------------------
Confidence 75 344443321 22233332 444443310
Q ss_pred hhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCC
Q 046828 307 ESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTS 386 (627)
Q Consensus 307 ~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~ 386 (627)
.....|.+||+.+++. ..+..|..
T Consensus 288 -------------------------------------------------------~g~~~i~~~d~~~~~~-~~l~~~~~ 311 (415)
T 2hqs_A 288 -------------------------------------------------------AGRPQVYKVNINGGAP-QRITWEGS 311 (415)
T ss_dssp -------------------------------------------------------TSSCEEEEEETTSSCC-EECCCSSS
T ss_pred -------------------------------------------------------CCCcEEEEEECCCCCE-EEEecCCC
Confidence 0122678889988763 45667778
Q ss_pred CeEEEEECCCCCEEEEEeCC-C-CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEE
Q 046828 387 PISALCFDRSGTLLVTASIH-G-NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWI 464 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~d-G-t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~L 464 (627)
.+..++|+|||++|++++.+ | ..|.+||+. ++ .+..+.. +. .+.+++|+|||++|
T Consensus 312 ~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~-------~~-------------~~~~l~~-~~--~~~~~~~spdg~~l 368 (415)
T 2hqs_A 312 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA-------TG-------------GVQVLSS-TF--LDETPSLAPNGTMV 368 (415)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCEEEEEEETT-------TC-------------CEEECCC-SS--SCEEEEECTTSSEE
T ss_pred cccCeEECCCCCEEEEEECcCCceEEEEEECC-------CC-------------CEEEecC-CC--CcCCeEEcCCCCEE
Confidence 89999999999999998865 2 348999985 23 2233432 22 58999999999999
Q ss_pred EEEeCCC---eEEEEEcCCCCCeeecccccccccCCCCCCC
Q 046828 465 AIVSSRG---TCHIFVLTPFGGETVLQIQNSHVDRPTLSPV 502 (627)
Q Consensus 465 as~S~dg---TvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~ 502 (627)
+.++.++ ++.+|++. .+....+..|...+..+.+.|.
T Consensus 369 ~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 369 IYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp EEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCC
T ss_pred EEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccc
Confidence 9998877 78888886 3344566677666665555554
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.71 E-value=4.9e-16 Score=165.81 Aligned_cols=63 Identities=8% Similarity=0.082 Sum_probs=48.9
Q ss_pred CCcEEEEEECCCCceEEE-----Ee-cCCeEEEEEecC----------cEEEEEeC-CeEEEEeCCCCceeEEEEcCCCC
Q 046828 178 SPTAVRFYSLRSHNYVHV-----LR-FRSTVYMVRCSP----------RIVAVGLA-AQIYCFDALTLESKFSVLTYPVP 240 (627)
Q Consensus 178 ~~~tV~lwdl~t~~~V~t-----L~-f~s~V~sV~~s~----------~~LaV~~~-~~I~i~D~~t~e~~~tl~~~p~~ 240 (627)
.+++|+|||+++++.... ++ |...|.+|+|++ ++||++.+ ++|+|||+.+.+.+..+..|..+
T Consensus 109 ~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~ 188 (393)
T 4gq1_A 109 QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSP 188 (393)
T ss_dssp TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSC
T ss_pred CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCC
Confidence 358899999999976543 23 456999999974 68888865 57999999998888777776554
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.67 E-value=1.2e-14 Score=154.54 Aligned_cols=228 Identities=12% Similarity=0.143 Sum_probs=153.0
Q ss_pred CeEEEEecc-CcEEEEecCCCCCceEE-----eeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCccee
Q 046828 81 KHVLLLGYS-NGFQVLDVEDATNVSEL-----VSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVH 154 (627)
Q Consensus 81 ~~vl~~Gy~-~G~qVWdv~~~~~~~el-----ls~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~ 154 (627)
..+++.+.+ +.+++||++.... ... +..|.+.|..+.+.|.. .+++ .+.
T Consensus 134 ~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~-s~~---------- 188 (433)
T 3bws_A 134 TRLAIPLLEDEGMDVLDINSGQT-VRLSPPEKYKKKLGFVETISIPEHN-------------ELWV-SQM---------- 188 (433)
T ss_dssp SEEEEEBTTSSSEEEEETTTCCE-EEECCCHHHHTTCCEEEEEEEGGGT-------------EEEE-EEG----------
T ss_pred CeEEEEeCCCCeEEEEECCCCeE-eeecCcccccccCCceeEEEEcCCC-------------EEEE-EEC----------
Confidence 556666654 4599999997553 332 22456777777774431 3433 220
Q ss_pred eeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEec-CCeEEEEEecC--cEE-EEE-eCCeEEEEeCCCCc
Q 046828 155 VHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRF-RSTVYMVRCSP--RIV-AVG-LAAQIYCFDALTLE 229 (627)
Q Consensus 155 ~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f-~s~V~sV~~s~--~~L-aV~-~~~~I~i~D~~t~e 229 (627)
.+++|++||+++++.+.++.. ...+.++++++ +.| +++ .++.|++||+.+++
T Consensus 189 -----------------------~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~ 245 (433)
T 3bws_A 189 -----------------------QANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL 245 (433)
T ss_dssp -----------------------GGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred -----------------------CCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence 126799999999999999984 45899999987 455 445 35789999999988
Q ss_pred eeEEEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhh
Q 046828 230 SKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVE 307 (627)
Q Consensus 230 ~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~ 307 (627)
.+..+..+.. ...++++| ++|+++...
T Consensus 246 ~~~~~~~~~~--------------~~~~~~~~~g~~l~~~~~~------------------------------------- 274 (433)
T 3bws_A 246 EIRKTDKIGL--------------PRGLLLSKDGKELYIAQFS------------------------------------- 274 (433)
T ss_dssp EEEECCCCSE--------------EEEEEECTTSSEEEEEEEE-------------------------------------
T ss_pred EEEEecCCCC--------------ceEEEEcCCCCEEEEEECC-------------------------------------
Confidence 7665533211 11233322 233332200
Q ss_pred hhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCC
Q 046828 308 SSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSP 387 (627)
Q Consensus 308 ~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~ 387 (627)
.+. ....+|.|++||+.+++.+..+ .|...
T Consensus 275 -------------------------------------------~~~------~~~~dg~i~~~d~~~~~~~~~~-~~~~~ 304 (433)
T 3bws_A 275 -------------------------------------------ASN------QESGGGRLGIYSMDKEKLIDTI-GPPGN 304 (433)
T ss_dssp -------------------------------------------SCT------TCSCCEEEEEEETTTTEEEEEE-EEEEC
T ss_pred -------------------------------------------CCc------cccCCCeEEEEECCCCcEEeec-cCCCC
Confidence 000 0125899999999999877665 45668
Q ss_pred eEEEEECCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE
Q 046828 388 ISALCFDRSGT-LLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI 466 (627)
Q Consensus 388 Is~laFspdG~-lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las 466 (627)
+..++|+|+|+ ++++++.+|+ |++||+. ++ ..+..+. ....+.+++|+||+++|++
T Consensus 305 ~~~~~~~~~g~~l~~~~~~~~~-v~v~d~~-------~~------------~~~~~~~---~~~~~~~~~~s~dg~~l~~ 361 (433)
T 3bws_A 305 KRHIVSGNTENKIYVSDMCCSK-IEVYDLK-------EK------------KVQKSIP---VFDKPNTIALSPDGKYLYV 361 (433)
T ss_dssp EEEEEECSSTTEEEEEETTTTE-EEEEETT-------TT------------EEEEEEE---CSSSEEEEEECTTSSEEEE
T ss_pred cceEEECCCCCEEEEEecCCCE-EEEEECC-------CC------------cEEEEec---CCCCCCeEEEcCCCCEEEE
Confidence 99999999997 5566788886 8999985 22 1333332 1235899999999999999
Q ss_pred EeC---------------CCeEEEEEcCC
Q 046828 467 VSS---------------RGTCHIFVLTP 480 (627)
Q Consensus 467 ~S~---------------dgTvhIw~i~~ 480 (627)
++. ||+|++|++..
T Consensus 362 ~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 362 SCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp EECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred EecCCCccccccccccccceEEEEEECCC
Confidence 887 57999999865
No 126
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.5e-15 Score=167.17 Aligned_cols=92 Identities=13% Similarity=0.102 Sum_probs=75.3
Q ss_pred CCCCeEEEEECCCCe---EEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 362 DIAGMVVVKDIVSRS---VISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~---~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
+.|+.|++||+..++ ....++ +|...|.+++|+ |+.||+++ +|+ |++||+. .+
T Consensus 199 s~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~t-IkLWd~~-------~~------------ 255 (588)
T 2j04_A 199 LSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGY-VHKIDLK-------NY------------ 255 (588)
T ss_dssp ETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSE-EEEEETT-------TT------------
T ss_pred eCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCe-EEEEECC-------CC------------
Confidence 468999999998876 345674 888999999999 79999998 466 8999985 22
Q ss_pred eEEEEEeecCCcCcEEEEEE--ccCCCEEEEEeCCCeEEEEEcC
Q 046828 438 VHLYKLHRGMTSAVIQDICF--SHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sIaF--SpDg~~Las~S~dgTvhIw~i~ 479 (627)
++..+..||. +.|++|+| |||++.|++++.+|+ +||..+
T Consensus 256 -~~~~~~~gh~-~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 256 -SISSLKTGSL-ENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp -EEEEEECSCC-SCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred -eEEEEEcCCC-ceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 3434444754 56999999 999999999999999 999986
No 127
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.3e-14 Score=159.34 Aligned_cols=237 Identities=11% Similarity=0.107 Sum_probs=154.6
Q ss_pred CCcEEEEEeeccCCCCCCCCeEEEEeccCcEEEEecCCCCCceEEeeecCCc-----eEEEEEeeCCCCCCCCCCcCCCC
Q 046828 62 KDQVLWSSFDKLELSPSSFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDP-----VTFLQMQPLPAKSDGQEGFRNSH 136 (627)
Q Consensus 62 ~d~V~wa~Fd~l~~~~~~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~-----V~~v~~lp~p~~~~~~D~f~~~r 136 (627)
.+.|.-+.|-- .+..+.+++.++.++|||.+. ..+.+. |+.+ |.++++.|..
T Consensus 85 ~~~V~~vawSP------dG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG------------- 141 (588)
T 2j04_A 85 VCYPRVCKPSP------IDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIE------------- 141 (588)
T ss_dssp SCCEEEEEECS------SSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSS-------------
T ss_pred CCcEEEEEECC------CCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCC-------------
Confidence 56688888852 347899999999999999543 455566 7765 8888887643
Q ss_pred CEEEEEEccCccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCc-------eEEEEec-----CCeEEE
Q 046828 137 PLLLVVACDEAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHN-------YVHVLRF-----RSTVYM 204 (627)
Q Consensus 137 pLlavv~~d~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~-------~V~tL~f-----~s~V~s 204 (627)
.+||+.+ .+++|+|||++++. .+++++. .++|++
T Consensus 142 ~~LAsgs----------------------------------~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~s 187 (588)
T 2j04_A 142 SSIVVGN----------------------------------EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTH 187 (588)
T ss_dssp SCEEEEE----------------------------------TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEE
T ss_pred CEEEEEc----------------------------------CCCEEEEEECCCCccccccceeeeeeecccccccccEEE
Confidence 5666543 13789999999986 3778752 349999
Q ss_pred EEecCcEEEEE-eCCeEEEEeCCCCce---eEEEE-cCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCcc
Q 046828 205 VRCSPRIVAVG-LAAQIYCFDALTLES---KFSVL-TYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRL 279 (627)
Q Consensus 205 V~~s~~~LaV~-~~~~I~i~D~~t~e~---~~tl~-~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~ 279 (627)
|+++++-|+++ .+..|++||+.+.+. .+++. .|... +..++++...||.
T Consensus 188 VawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~-------------V~svaFsg~~LAS------------- 241 (588)
T 2j04_A 188 IVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRK-------------ITDLKIVDYKVVL------------- 241 (588)
T ss_dssp EEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSC-------------CCCEEEETTEEEE-------------
T ss_pred EEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCc-------------EEEEEEECCEEEE-------------
Confidence 99998546555 456899999988773 24553 33211 2223331122221
Q ss_pred CCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCccccccc
Q 046828 280 SPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSS 359 (627)
Q Consensus 280 ~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~ 359 (627)
T Consensus 242 -------------------------------------------------------------------------------- 241 (588)
T 2j04_A 242 -------------------------------------------------------------------------------- 241 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEE--CCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccc-----cC
Q 046828 360 DTDIAGMVVVKDIVSRSVISQFRAHTSPISALCF--DRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQT-----YD 432 (627)
Q Consensus 360 ~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laF--spdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~-----~~ 432 (627)
+ .+|.|++||+.+++......+|...|..++| +|||+.|++|+++|+ +||.... ....+.+.-.+. .-
T Consensus 242 -a-~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~--klw~~d~-~~~spd~~l~a~~d~~v~l 316 (588)
T 2j04_A 242 -T-CPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY--KVLLEDE-LHVTADNIIAPYLEKKFKK 316 (588)
T ss_dssp -E-CSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE--EEEESSS-EEEECCCSSHHHHHHHHHH
T ss_pred -E-eCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC--EEEeecc-EEECCCceEEEEcCCEEEE
Confidence 1 2589999999988774444489999999999 999999999999997 8998631 000001110000 00
Q ss_pred CCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeC
Q 046828 433 WTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSS 469 (627)
Q Consensus 433 ~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~ 469 (627)
|......+. ...+ ...|++|+|||||+.||+++.
T Consensus 317 W~~~g~~l~-~~~~--~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 317 WSTIWNEFN-NYET--TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp TTTTTTSSS-SSCC--EEEEEEEEECTTSSEEEEEEE
T ss_pred EECCCCcee-eecc--ceEEEEEEECCCCCEEEEEEe
Confidence 111000111 1122 235999999999999999854
No 128
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.60 E-value=5.9e-13 Score=135.25 Aligned_cols=93 Identities=8% Similarity=0.027 Sum_probs=72.2
Q ss_pred eEEEEECCCCeEE-EEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q 046828 366 MVVVKDIVSRSVI-SQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH 444 (627)
Q Consensus 366 ~V~IwD~~s~~~l-~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~ 444 (627)
.|.+||+.+++.. ..+..|...+..++|+|||++|+++ +++ |.+||+. ++ ..+..+.
T Consensus 220 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~-v~~~d~~-------~~------------~~~~~~~ 277 (337)
T 1pby_B 220 GLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-LESFDLE-------KN------------ASIKRVP 277 (337)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-EEEEETT-------TT------------EEEEEEE
T ss_pred ceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe-EEEEECC-------CC------------cCcceec
Confidence 5799999998764 3345677788999999999999998 465 8999985 23 1333333
Q ss_pred ecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 445 RGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 445 rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
.+ ..+.+++|+||+++|++++.+++|++|++.....
T Consensus 278 ~~---~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 278 LP---HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp CS---SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred CC---CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence 22 3478999999999999999999999999976543
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.59 E-value=3.1e-13 Score=145.74 Aligned_cols=172 Identities=18% Similarity=0.118 Sum_probs=120.1
Q ss_pred cEEEEEECCCCceEEEEe-cCCeEEEEEecC--cEEEEEeCC----eEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccc
Q 046828 180 TAVRFYSLRSHNYVHVLR-FRSTVYMVRCSP--RIVAVGLAA----QIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNI 252 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~-f~s~V~sV~~s~--~~LaV~~~~----~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~ 252 (627)
.+|++||+..++ ++.+. +...|.++++++ +.|+.+..+ .|++||+.+++.. .+..++..
T Consensus 159 ~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~------------ 224 (415)
T 2hqs_A 159 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRH------------ 224 (415)
T ss_dssp EEEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSC------------
T ss_pred ceEEEEcCCCCC-CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCc------------
Confidence 689999998554 45554 667999999998 677766543 8999999998864 45544321
Q ss_pred ccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeee
Q 046828 253 GYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRY 330 (627)
Q Consensus 253 ~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y 330 (627)
...++++| ++|||...
T Consensus 225 -~~~~~~spdg~~la~~~~------------------------------------------------------------- 242 (415)
T 2hqs_A 225 -NGAPAFSPDGSKLAFALS------------------------------------------------------------- 242 (415)
T ss_dssp -EEEEEECTTSSEEEEEEC-------------------------------------------------------------
T ss_pred -ccCEEEcCCCCEEEEEEe-------------------------------------------------------------
Confidence 22344443 44554321
Q ss_pred eccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC-CC-
Q 046828 331 YQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH-GN- 408 (627)
Q Consensus 331 ~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d-Gt- 408 (627)
.+.+..|.+||+.+++. ..+..|...+.+++|+|||+.|++++.+ |+
T Consensus 243 ------------------------------~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 243 ------------------------------KTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp ------------------------------TTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred ------------------------------cCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCc
Confidence 11235699999998765 6788899999999999999999988864 43
Q ss_pred EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC---CeEEEEEcCC
Q 046828 409 NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR---GTCHIFVLTP 480 (627)
Q Consensus 409 ~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d---gTvhIw~i~~ 480 (627)
.|.+||+. .+ .+.++. .+ ...+.+++|||||++|+.++.+ .+|++|++..
T Consensus 292 ~i~~~d~~-------~~-------------~~~~l~-~~-~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 292 QVYKVNIN-------GG-------------APQRIT-WE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 344 (415)
T ss_dssp EEEEEETT-------SS-------------CCEECC-CS-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred EEEEEECC-------CC-------------CEEEEe-cC-CCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence 35666764 22 112221 11 2358899999999999998865 5899999874
No 130
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.57 E-value=4.3e-13 Score=132.60 Aligned_cols=217 Identities=11% Similarity=0.034 Sum_probs=142.1
Q ss_pred eccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccCcccccCC
Q 046828 87 GYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGRDGLVRDG 166 (627)
Q Consensus 87 Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~~~~~~~g 166 (627)
+.++.+.+||+.... .+.+..+.+.|..+.+.|.. .+|++..
T Consensus 19 ~~~~~i~~~d~~~~~--~~~~~~~~~~v~~~~~spdg-------------~~l~~~~----------------------- 60 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRK--MRVVWQTPELFEAPNWSPDG-------------KYLLLNS----------------------- 60 (297)
T ss_dssp CCCEEEEEEETTTTE--EEEEEEESSCCEEEEECTTS-------------SEEEEEE-----------------------
T ss_pred CcceeEEEEeCCCCc--eeeeccCCcceEeeEECCCC-------------CEEEEEc-----------------------
Confidence 456789999998754 44455678888888887643 4555421
Q ss_pred CCCCCCCCCCcCCcEEEEEECCC-CceEEEEecC--CeEEEEEecC--cEEEEEe-----CCeEEEEeCCCCceeEEEEc
Q 046828 167 YDEPQPGNVAMSPTAVRFYSLRS-HNYVHVLRFR--STVYMVRCSP--RIVAVGL-----AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 167 ~~~~~~~~~~~~~~tV~lwdl~t-~~~V~tL~f~--s~V~sV~~s~--~~LaV~~-----~~~I~i~D~~t~e~~~tl~~ 236 (627)
+..|.+||+.+ ++....+... ..|.++++++ +.|+++. ..+|++||+.+.+. ..+..
T Consensus 61 ------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~ 127 (297)
T 2ojh_A 61 ------------EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTK 127 (297)
T ss_dssp ------------TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCS
T ss_pred ------------CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeec
Confidence 15699999999 8887666544 5788899987 6777776 23677778776652 22221
Q ss_pred CCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcce
Q 046828 237 YPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGL 316 (627)
Q Consensus 237 ~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl 316 (627)
+.. . ..+++.++... +
T Consensus 128 ~~~--------------~-------~~~~~spdg~~---------------------------------------l---- 143 (297)
T 2ojh_A 128 NLP--------------S-------YWHGWSPDGKS---------------------------------------F---- 143 (297)
T ss_dssp SSS--------------E-------EEEEECTTSSE---------------------------------------E----
T ss_pred CCC--------------c-------cceEECCCCCE---------------------------------------E----
Confidence 110 1 12333322100 0
Q ss_pred eecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEEC--CCCeEEEEeccCCCCeEEEEEC
Q 046828 317 INLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDI--VSRSVISQFRAHTSPISALCFD 394 (627)
Q Consensus 317 ~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~--~s~~~l~~~~aH~~~Is~laFs 394 (627)
.+ .+..++.++||++ .++ ....+..|...+.+++|+
T Consensus 144 ---------~~--------------------------------~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~s 181 (297)
T 2ojh_A 144 ---------TY--------------------------------CGIRDQVFDIYSMDIDSG-VETRLTHGEGRNDGPDYS 181 (297)
T ss_dssp ---------EE--------------------------------EEEETTEEEEEEEETTTC-CEEECCCSSSCEEEEEEC
T ss_pred ---------EE--------------------------------EECCCCceEEEEEECCCC-cceEcccCCCccccceEC
Confidence 00 0124566788874 443 456777888899999999
Q ss_pred CCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC---
Q 046828 395 RSGTLLVTASI-HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR--- 470 (627)
Q Consensus 395 pdG~lLaTaS~-dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d--- 470 (627)
|+|++|+.++. ++. ++||++.... + .+..+. .+. ..+.+++|+||+++|++++.+
T Consensus 182 ~dg~~l~~~~~~~~~-~~i~~~~~~~-----~-------------~~~~~~-~~~-~~~~~~~~s~dg~~l~~~~~~~~~ 240 (297)
T 2ojh_A 182 PDGRWIYFNSSRTGQ-MQIWRVRVDG-----S-------------SVERIT-DSA-YGDWFPHPSPSGDKVVFVSYDADV 240 (297)
T ss_dssp TTSSEEEEEECTTSS-CEEEEEETTS-----S-------------CEEECC-CCS-EEEEEEEECTTSSEEEEEEEETTC
T ss_pred CCCCEEEEEecCCCC-ccEEEECCCC-----C-------------CcEEEe-cCC-cccCCeEECCCCCEEEEEEcCCCC
Confidence 99998887764 776 7999885221 1 233332 222 358999999999999998876
Q ss_pred --------CeEEEEEcCCC
Q 046828 471 --------GTCHIFVLTPF 481 (627)
Q Consensus 471 --------gTvhIw~i~~~ 481 (627)
+.+++|++...
T Consensus 241 ~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 241 FDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp CSCCSSEEEEEEEEETTSC
T ss_pred CcccccCceEEEEEecCCC
Confidence 56888988653
No 131
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.54 E-value=2.3e-11 Score=124.72 Aligned_cols=174 Identities=13% Similarity=0.130 Sum_probs=121.6
Q ss_pred cEEEEEECCCCceEEEEecCC----------eEEEEEecC--cEEEEEe---CCeEEEEeCCCCceeEEEEcCCCCCCCC
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS----------TVYMVRCSP--RIVAVGL---AAQIYCFDALTLESKFSVLTYPVPHFGG 244 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s----------~V~sV~~s~--~~LaV~~---~~~I~i~D~~t~e~~~tl~~~p~~~~~~ 244 (627)
+.|.+||+++++.+.++..+. .+.++.+++ +.|+++. +++|++||+.+++.+..+..+...
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---- 186 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKM---- 186 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTT----
T ss_pred CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCc----
Confidence 679999999999999998753 268899986 5566554 457999999999887776422110
Q ss_pred CCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcce
Q 046828 245 QGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGY 324 (627)
Q Consensus 245 ~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~ 324 (627)
+.-+++.++...
T Consensus 187 ----------------~~~~~~s~dg~~---------------------------------------------------- 198 (353)
T 3vgz_A 187 ----------------STGLALDSEGKR---------------------------------------------------- 198 (353)
T ss_dssp ----------------CCCCEEETTTTE----------------------------------------------------
T ss_pred ----------------cceEEECCCCCE----------------------------------------------------
Confidence 012222221100
Q ss_pred eEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEecc----CCCCeEEEEECCCCCEE
Q 046828 325 KTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRA----HTSPISALCFDRSGTLL 400 (627)
Q Consensus 325 ~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~a----H~~~Is~laFspdG~lL 400 (627)
+ | .+..++.|.+||+.+++.+..+.. +...+..++|+|+|++|
T Consensus 199 --l--~-----------------------------~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 245 (353)
T 3vgz_A 199 --L--Y-----------------------------TTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRA 245 (353)
T ss_dssp --E--E-----------------------------EECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEE
T ss_pred --E--E-----------------------------EEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEE
Confidence 0 0 012467899999999998888775 55568889999999988
Q ss_pred EEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcC
Q 046828 401 VTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLT 479 (627)
Q Consensus 401 aTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~ 479 (627)
+.++.+...|.+||+. ++. .+..+.-+. -..++|+||+++|++++ .+++|++|++.
T Consensus 246 ~~~~~~~~~v~~~d~~-------~~~------------~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 246 FITDSKAAEVLVVDTR-------NGN------------ILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp EEEESSSSEEEEEETT-------TCC------------EEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCEEEEEECC-------CCc------------EEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 8877764458999985 232 333343232 25699999999877766 68999999987
Q ss_pred CC
Q 046828 480 PF 481 (627)
Q Consensus 480 ~~ 481 (627)
..
T Consensus 303 ~~ 304 (353)
T 3vgz_A 303 SY 304 (353)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.53 E-value=9.3e-12 Score=126.66 Aligned_cols=104 Identities=7% Similarity=0.183 Sum_probs=68.7
Q ss_pred CCCeEEEEECCC-CeEEE----Eecc-CCCCeEEEEECCCCCEEEEEe-CCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 363 IAGMVVVKDIVS-RSVIS----QFRA-HTSPISALCFDRSGTLLVTAS-IHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 363 ~dG~V~IwD~~s-~~~l~----~~~a-H~~~Is~laFspdG~lLaTaS-~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
.++.|.+||+.+ ++... .+.. ....+..++|+|+|++|+.++ .+++ |++|++... +|.
T Consensus 149 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~-i~~~~~~~~-----~g~--------- 213 (343)
T 1ri6_A 149 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDP-----HGN--------- 213 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCT-----TSC---------
T ss_pred CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCE-EEEEEecCC-----CCc---------
Confidence 467899999987 54322 2333 345788999999999776665 5665 899998521 121
Q ss_pred ceeEEEEEe---ecCC-cCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCCC
Q 046828 436 SHVHLYKLH---RGMT-SAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPFG 482 (627)
Q Consensus 436 ~~~~l~~l~---rG~t-~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~g 482 (627)
...+..+. .++. ...+.+++|+||+++|+++. .+++|++|++...+
T Consensus 214 -~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~ 264 (343)
T 1ri6_A 214 -IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG 264 (343)
T ss_dssp -CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred -EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCC
Confidence 01122221 1211 12478999999999988655 78999999997533
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.53 E-value=4e-12 Score=129.42 Aligned_cols=103 Identities=9% Similarity=0.108 Sum_probs=68.8
Q ss_pred CCCeEEEEECCC--CeE--EEEec---cC---CCCeEEEEECCCCCEEEEEe-CCCCEEEEEeCCCCCCCCCCCCCcccc
Q 046828 363 IAGMVVVKDIVS--RSV--ISQFR---AH---TSPISALCFDRSGTLLVTAS-IHGNNINIFRIMPSSSKGRSGSASQTY 431 (627)
Q Consensus 363 ~dG~V~IwD~~s--~~~--l~~~~---aH---~~~Is~laFspdG~lLaTaS-~dGt~I~Vwdi~p~~~~~~~g~~~~~~ 431 (627)
.++.|.+||+.. ++. +..+. .+ ...+..++|+|+|++|+.+. .+++ |++||+.+.. +.
T Consensus 198 ~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~-i~v~d~~~~~-----~~----- 266 (343)
T 1ri6_A 198 LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVSEDG-----SV----- 266 (343)
T ss_dssp TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTS-----CC-----
T ss_pred CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE-EEEEEEcCCC-----Cc-----
Confidence 567899999853 322 22332 11 23567899999999887554 5665 8999986221 11
Q ss_pred CCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCCCCe
Q 046828 432 DWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPFGGE 484 (627)
Q Consensus 432 ~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~gg~ 484 (627)
...+..+..+ ..+.+++|+||+++|++++ .+++++||+++...+.
T Consensus 267 -----~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 267 -----LSKEGFQPTE---TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp -----EEEEEEEECS---SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred -----eEEeeeecCC---CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCce
Confidence 1233333222 2378999999999999988 6899999998876553
No 134
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.53 E-value=2.3e-12 Score=144.52 Aligned_cols=282 Identities=10% Similarity=0.104 Sum_probs=165.7
Q ss_pred CCCeEEEEeccCcEEEEec--CCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeee
Q 046828 79 SFKHVLLLGYSNGFQVLDV--EDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVH 156 (627)
Q Consensus 79 ~~~~vl~~Gy~~G~qVWdv--~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~ 156 (627)
+++.+++.+.++.+.+||+ .+...+.+ +.. ...++.+.+.|-+. . ...+|++..
T Consensus 189 dg~~l~v~~~d~~V~v~D~~~~t~~~~~~-i~~-g~~p~~va~sp~~~----~-----dg~~l~v~~------------- 244 (543)
T 1nir_A 189 SGRYLLVIGRDARIDMIDLWAKEPTKVAE-IKI-GIEARSVESSKFKG----Y-----EDRYTIAGA------------- 244 (543)
T ss_dssp TSCEEEEEETTSEEEEEETTSSSCEEEEE-EEC-CSEEEEEEECCSTT----C-----TTTEEEEEE-------------
T ss_pred CCCEEEEECCCCeEEEEECcCCCCcEEEE-Eec-CCCcceEEeCCCcC----C-----CCCEEEEEE-------------
Confidence 4578999999999999999 55332222 222 22346666655110 0 114555432
Q ss_pred ccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC-----------C-eEEEEEecC--cEEEEEe--CCeE
Q 046828 157 VGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR-----------S-TVYMVRCSP--RIVAVGL--AAQI 220 (627)
Q Consensus 157 ~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~-----------s-~V~sV~~s~--~~LaV~~--~~~I 220 (627)
+.+++|.+||..++++++++..+ . .+.+|.+++ +.++++. +++|
T Consensus 245 --------------------~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i 304 (543)
T 1nir_A 245 --------------------YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV 304 (543)
T ss_dssp --------------------EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred --------------------ccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeE
Confidence 11367999999999999998742 2 688999986 4444443 4589
Q ss_pred EEEeCCCCceeE--EEEcCCCCCCCCCCCcCcccccceeeEcC--ceEEEcC-CCCCcCCCCccCCCCCCCCCCCCCCCC
Q 046828 221 YCFDALTLESKF--SVLTYPVPHFGGQGTSGVNIGYGPMAVGP--RWLAYAS-NNPLLPNTGRLSPQSLTPPSVSPSTSP 295 (627)
Q Consensus 221 ~i~D~~t~e~~~--tl~~~p~~~~~~~g~~~~~~~~~~iAl~~--r~LAy~~-~~~~v~~~gr~~~q~~t~~~~s~~~s~ 295 (627)
.+||..+++.+. ++..... ...++++| |+|..+. .+..+..
T Consensus 305 ~vvd~~~~~~l~~~~i~~~~~--------------~~~~~~spdg~~l~va~~~~~~v~v-------------------- 350 (543)
T 1nir_A 305 LLVNYKDIDNLTVTSIGAAPF--------------LHDGGWDSSHRYFMTAANNSNKVAV-------------------- 350 (543)
T ss_dssp EEEECTTSSSCEEEEEECCSS--------------CCCEEECTTSCEEEEEEGGGTEEEE--------------------
T ss_pred EEEEecCCCcceeEEeccCcC--------------ccCceECCCCCEEEEEecCCCeEEE--------------------
Confidence 999999887654 3332111 12255654 5543332 2212111
Q ss_pred CCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCc-cCCCccccCcccccccCCCCCCeEEEEECCC
Q 046828 296 SNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPV-SSNSSWKAGRNASHSSDTDIAGMVVVKDIVS 374 (627)
Q Consensus 296 s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~-s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s 374 (627)
+..+.. ++...+ .+|..- ..+.+..+ .++ .|.+- .+....+++|.|||+.+
T Consensus 351 --------~D~~tg-~l~~~i-~~g~~p------------h~g~g~~~~~p~----~g~~~--~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 351 --------IDSKDR-RLSALV-DVGKTP------------HPGRGANFVHPK----YGPVW--STSHLGDGSISLIGTDP 402 (543)
T ss_dssp --------EETTTT-EEEEEE-ECSSSB------------CCTTCEEEEETT----TEEEE--EEEBSSSSEEEEEECCT
T ss_pred --------EECCCC-eEEEee-ccCCCC------------CCCCCcccCCCC----CccEE--EeccCCCceEEEEEeCC
Confidence 111111 111111 111000 00000000 000 01110 00112578999999998
Q ss_pred -------CeEEEEeccCCCCeEEEEECCCCCEEEEEeC-------CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 375 -------RSVISQFRAHTSPISALCFDRSGTLLVTASI-------HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 375 -------~~~l~~~~aH~~~Is~laFspdG~lLaTaS~-------dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
.+++.++..|...+..|+|+|+|+.|++++. +++ |.|||+. ++. .+
T Consensus 403 ~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~-v~v~d~~-------~~~------------~~ 462 (543)
T 1nir_A 403 KNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VAVFDLK-------NLD------------AK 462 (543)
T ss_dssp TTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTC-EEEEETT-------CTT------------SC
T ss_pred CCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCce-EEEEECC-------CCC------------CC
Confidence 8999999999999999999999999999872 445 8999996 221 12
Q ss_pred EEEe-----ec--CCcCcEEEEEEccCCCEEEEEe-----CCCeEEEEEcCCCCCeee
Q 046828 441 YKLH-----RG--MTSAVIQDICFSHYSQWIAIVS-----SRGTCHIFVLTPFGGETV 486 (627)
Q Consensus 441 ~~l~-----rG--~t~a~I~sIaFSpDg~~Las~S-----~dgTvhIw~i~~~gg~~~ 486 (627)
++.. .| .....+..++|+|||++|.++. .+++|.|||..+......
T Consensus 463 ~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~ 520 (543)
T 1nir_A 463 YQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV 520 (543)
T ss_dssp CEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred eEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEe
Confidence 2221 01 1123589999999999999873 479999999887654433
No 135
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.53 E-value=3.8e-12 Score=142.67 Aligned_cols=234 Identities=14% Similarity=0.126 Sum_probs=146.0
Q ss_pred CeEEEEec-cCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 81 KHVLLLGY-SNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 81 ~~vl~~Gy-~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
.++++.++ ++.+.|||..+... ...+..+.. +..+.+.|.- .+|++..
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~-~~~i~~g~~-~~~v~~spdg-------------~~l~v~~---------------- 197 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKI-VKVIDTGYA-VHISRMSASG-------------RYLLVIG---------------- 197 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCE-EEEEECSTT-EEEEEECTTS-------------CEEEEEE----------------
T ss_pred CEEEEEEcCCCeEEEEECCCceE-EEEEecCcc-cceEEECCCC-------------CEEEEEC----------------
Confidence 35555555 56699999987553 333332222 5555555432 5565432
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEEC--CCCceEEEEecCCeEEEEEecC------cEEEEEe--CCeEEEEeCCCCc
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSL--RSHNYVHVLRFRSTVYMVRCSP------RIVAVGL--AAQIYCFDALTLE 229 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl--~t~~~V~tL~f~s~V~sV~~s~------~~LaV~~--~~~I~i~D~~t~e 229 (627)
.+++|++||+ ++++.+.++.....++.|+|++ ++|+|+. +++|.+||..|++
T Consensus 198 ------------------~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 198 ------------------RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp ------------------TTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred ------------------CCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 1267999999 8999999999888899999986 5777764 6799999999999
Q ss_pred eeEEEEcCCCCCCCCCCCcCcccccceeeEcCc--eEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhh
Q 046828 230 SKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPR--WLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVE 307 (627)
Q Consensus 230 ~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r--~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~ 307 (627)
.+.++.+...... ...+..+++ -+++.++.+. +
T Consensus 260 ~~~~i~~~g~~~~-----------~~~~~~~~~v~~i~~s~~~~~---------------------------~------- 294 (543)
T 1nir_A 260 PKQIVSTRGMTVD-----------TQTYHPEPRVAAIIASHEHPE---------------------------F------- 294 (543)
T ss_dssp EEEEEECCEECSS-----------SCCEESCCCEEEEEECSSSSE---------------------------E-------
T ss_pred cceeecccCcccC-----------ccccccCCceEEEEECCCCCE---------------------------E-------
Confidence 9988865322100 000000111 1222221100 0
Q ss_pred hhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEE--EeccCC
Q 046828 308 SSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVIS--QFRAHT 385 (627)
Q Consensus 308 ~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~--~~~aH~ 385 (627)
+ .....+|.|.+||+.+.+.+. .+. |.
T Consensus 295 -------------------~-------------------------------vs~~~~g~i~vvd~~~~~~l~~~~i~-~~ 323 (543)
T 1nir_A 295 -------------------I-------------------------------VNVKETGKVLLVNYKDIDNLTVTSIG-AA 323 (543)
T ss_dssp -------------------E-------------------------------EEETTTTEEEEEECTTSSSCEEEEEE-CC
T ss_pred -------------------E-------------------------------EEECCCCeEEEEEecCCCcceeEEec-cC
Confidence 0 012467899999998865433 443 56
Q ss_pred CCeEEEEECCCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC--cEEEEEEccC-C
Q 046828 386 SPISALCFDRSGTLLVTASI-HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA--VIQDICFSHY-S 461 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~-dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a--~I~sIaFSpD-g 461 (627)
..+..++|+|||++|++++. +++ |.|||+. +| ..+..+.-|..+. ....+ ++|| +
T Consensus 324 ~~~~~~~~spdg~~l~va~~~~~~-v~v~D~~-------tg------------~l~~~i~~g~~ph~g~g~~~-~~p~~g 382 (543)
T 1nir_A 324 PFLHDGGWDSSHRYFMTAANNSNK-VAVIDSK-------DR------------RLSALVDVGKTPHPGRGANF-VHPKYG 382 (543)
T ss_dssp SSCCCEEECTTSCEEEEEEGGGTE-EEEEETT-------TT------------EEEEEEECSSSBCCTTCEEE-EETTTE
T ss_pred cCccCceECCCCCEEEEEecCCCe-EEEEECC-------CC------------eEEEeeccCCCCCCCCCccc-CCCCCc
Confidence 66888999999998776654 555 8999986 33 2344443332221 22233 5777 5
Q ss_pred CEEEEEe-CCCeEEEEEcCC
Q 046828 462 QWIAIVS-SRGTCHIFVLTP 480 (627)
Q Consensus 462 ~~Las~S-~dgTvhIw~i~~ 480 (627)
+.++++. .+++|.||++.+
T Consensus 383 ~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 383 PVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp EEEEEEBSSSSEEEEEECCT
T ss_pred cEEEeccCCCceEEEEEeCC
Confidence 5566655 589999999987
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.52 E-value=8.2e-12 Score=127.61 Aligned_cols=246 Identities=8% Similarity=0.139 Sum_probs=150.5
Q ss_pred EEEeeccCCCCCCCCeEEEEec-cCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEcc
Q 046828 67 WSSFDKLELSPSSFKHVLLLGY-SNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACD 145 (627)
Q Consensus 67 wa~Fd~l~~~~~~~~~vl~~Gy-~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d 145 (627)
++.|+. ..+.+++.+. ++.+.+||++........+..+.++...+.+.|. ..+|+ +. +
T Consensus 44 ~~~~s~------dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~d-------------g~~l~-~~-~ 102 (331)
T 3u4y_A 44 DTAITS------DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPD-------------DQFAV-TV-T 102 (331)
T ss_dssp EEEECS------SSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTT-------------SSEEE-EC-C
T ss_pred eEEEcC------CCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCC-------------CCEEE-Ee-c
Confidence 666653 2356777777 6679999998754214444444454332454432 25555 32 1
Q ss_pred CccCCcceeeeccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEE-EEEeC-Ce-E
Q 046828 146 EAKNSGLVHVHVGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIV-AVGLA-AQ-I 220 (627)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~L-aV~~~-~~-I 220 (627)
.. + .+..|.+||+++++.+.++.......++++++ +.| ++... ++ |
T Consensus 103 ~~---~--------------------------~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i 153 (331)
T 3u4y_A 103 GL---N--------------------------HPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTV 153 (331)
T ss_dssp CS---S--------------------------SSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEE
T ss_pred CC---C--------------------------CcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceE
Confidence 10 0 01379999999999999998887789999998 344 44444 57 9
Q ss_pred EEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcc
Q 046828 221 YCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNL 300 (627)
Q Consensus 221 ~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~ 300 (627)
++||+.....+........+ ....++.+++.++...
T Consensus 154 ~~~~~~~~g~~~~~~~~~~~----------------~~~~~~~~~~spdg~~---------------------------- 189 (331)
T 3u4y_A 154 RRFKIDADGVLFDTGQEFIS----------------GGTRPFNITFTPDGNF---------------------------- 189 (331)
T ss_dssp EEEEECTTCCEEEEEEEEEC----------------SSSSEEEEEECTTSSE----------------------------
T ss_pred EEEEECCCCcEeecCCcccc----------------CCCCccceEECCCCCE----------------------------
Confidence 99998764433222110000 0001234454432100
Q ss_pred cchhhhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeE---
Q 046828 301 MARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSV--- 377 (627)
Q Consensus 301 v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~--- 377 (627)
++ + ....++.|.+||+.+++.
T Consensus 190 ---------------l~---------v--------------------------------~~~~~~~v~v~d~~~~~~~~~ 213 (331)
T 3u4y_A 190 ---------------AF---------V--------------------------------ANLIGNSIGILETQNPENITL 213 (331)
T ss_dssp ---------------EE---------E--------------------------------EETTTTEEEEEECSSTTSCEE
T ss_pred ---------------EE---------E--------------------------------EeCCCCeEEEEECCCCcccce
Confidence 00 0 123568899999999887
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecC--CcC---cE
Q 046828 378 ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGM--TSA---VI 452 (627)
Q Consensus 378 l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~--t~a---~I 452 (627)
+..+..+ ..+..++|+|||++|+.++.....|.+||+. ++. ...+..+..+. ... ..
T Consensus 214 ~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~-------~~~----------~~~~~~~~~~~~~~~~~~~~~ 275 (331)
T 3u4y_A 214 LNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQL-------SGT----------LSFVKSFGHGLLIDPRPLFGA 275 (331)
T ss_dssp EEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETT-------TTE----------EEEEEEEECCCCCCCGGGTTC
T ss_pred eeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECC-------CCc----------eeeecccccccccCCCCcccc
Confidence 7777755 5568899999999887776543448999985 231 01233333321 111 13
Q ss_pred EEEEEccCCCEEEEEeC-CCeEEEEEcCC
Q 046828 453 QDICFSHYSQWIAIVSS-RGTCHIFVLTP 480 (627)
Q Consensus 453 ~sIaFSpDg~~Las~S~-dgTvhIw~i~~ 480 (627)
..++|+||+++|++++. +++|.||++..
T Consensus 276 ~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 276 NQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp CCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred cceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 56899999999977665 56999999975
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.51 E-value=7.6e-12 Score=127.84 Aligned_cols=228 Identities=12% Similarity=0.059 Sum_probs=140.1
Q ss_pred CeEEEE-eccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 81 KHVLLL-GYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 81 ~~vl~~-Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
..+++. ..++.+.+||+++.. +...+.....++ .+.+.|.- ..|+++..
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~-~~~~~~~~~~~~-~~~~s~dg-------------~~l~~~~~--------------- 59 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLE-ILNQITLGYDFV-DTAITSDC-------------SNVVVTSD--------------- 59 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCC-EEEEEECCCCEE-EEEECSSS-------------CEEEEEES---------------
T ss_pred CEEEEEecCCCeEEEEeCcccc-eeeeEEccCCcc-eEEEcCCC-------------CEEEEEeC---------------
Confidence 455554 456679999998754 334444333444 55554431 44554320
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCce-EEEEecCCeEEE-EEecC--cEEEEEeCC----eEEEEeCCCCcee
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNY-VHVLRFRSTVYM-VRCSP--RIVAVGLAA----QIYCFDALTLESK 231 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~-V~tL~f~s~V~s-V~~s~--~~LaV~~~~----~I~i~D~~t~e~~ 231 (627)
....|.+||+++++. +..+........ +.+++ ++|+++..+ +|++||+.+++.+
T Consensus 60 ------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~ 121 (331)
T 3u4y_A 60 ------------------FCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFI 121 (331)
T ss_dssp ------------------TTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEE
T ss_pred ------------------CCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeE
Confidence 125799999999998 788876664455 99987 577766555 8999999999887
Q ss_pred EEEEcCCCCCCCCCCCcCcccccceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhh
Q 046828 232 FSVLTYPVPHFGGQGTSGVNIGYGPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQ 311 (627)
Q Consensus 232 ~tl~~~p~~~~~~~g~~~~~~~~~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~ 311 (627)
..+.....+ +.+++.++...+
T Consensus 122 ~~~~~~~~~---------------------~~~~~spdg~~l-------------------------------------- 142 (331)
T 3u4y_A 122 STIPIPYDA---------------------VGIAISPNGNGL-------------------------------------- 142 (331)
T ss_dssp EEEECCTTE---------------------EEEEECTTSSCE--------------------------------------
T ss_pred EEEECCCCc---------------------cceEECCCCCEE--------------------------------------
Confidence 766432211 234444321100
Q ss_pred hhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCe-EEEEECCCCeEE----EEeccCCC
Q 046828 312 LAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGM-VVVKDIVSRSVI----SQFRAHTS 386 (627)
Q Consensus 312 l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~-V~IwD~~s~~~l----~~~~aH~~ 386 (627)
+ + ....++. |.+||+.....+ .....+..
T Consensus 143 -----~---------~--------------------------------~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 176 (331)
T 3u4y_A 143 -----I---------L--------------------------------IDRSSANTVRRFKIDADGVLFDTGQEFISGGT 176 (331)
T ss_dssp -----E---------E--------------------------------EEETTTTEEEEEEECTTCCEEEEEEEEECSSS
T ss_pred -----E---------E--------------------------------EecCCCceEEEEEECCCCcEeecCCccccCCC
Confidence 0 0 0112345 788887653322 11223345
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI 466 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las 466 (627)
.+..++|+|||++|+.++.....|++||+. ++.. ...+..+..+ ..+.+++|+|||++|++
T Consensus 177 ~~~~~~~spdg~~l~v~~~~~~~v~v~d~~-------~~~~---------~~~~~~~~~~---~~~~~~~~spdg~~l~v 237 (331)
T 3u4y_A 177 RPFNITFTPDGNFAFVANLIGNSIGILETQ-------NPEN---------ITLLNAVGTN---NLPGTIVVSRDGSTVYV 237 (331)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEECS-------STTS---------CEEEEEEECS---SCCCCEEECTTSSEEEE
T ss_pred CccceEECCCCCEEEEEeCCCCeEEEEECC-------CCcc---------cceeeeccCC---CCCceEEECCCCCEEEE
Confidence 679999999999766665433348999985 2320 0124444332 34788999999998877
Q ss_pred Ee-CCCeEEEEEcCC
Q 046828 467 VS-SRGTCHIFVLTP 480 (627)
Q Consensus 467 ~S-~dgTvhIw~i~~ 480 (627)
++ .+++|.+|++..
T Consensus 238 ~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 238 LTESTVDVFNFNQLS 252 (331)
T ss_dssp ECSSEEEEEEEETTT
T ss_pred EEcCCCEEEEEECCC
Confidence 66 478899999864
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.50 E-value=1.2e-12 Score=149.82 Aligned_cols=105 Identities=10% Similarity=0.027 Sum_probs=73.9
Q ss_pred eEEEEECCC-CeEEEEec--cCCCCeEEEEECCCCCEEEEEeC-----CCCEEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 366 MVVVKDIVS-RSVISQFR--AHTSPISALCFDRSGTLLVTASI-----HGNNINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 366 ~V~IwD~~s-~~~l~~~~--aH~~~Is~laFspdG~lLaTaS~-----dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
.|.+||+.+ ++...... .|...+..++| |||++|+.++. ++ .|++||+. +|. .
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~-~i~~~d~~-------~g~----------~ 324 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKL-DLVEVTLA-------SNQ----------Q 324 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEE-EEEEEETT-------TCC----------E
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeE-EEEEEECC-------CCc----------e
Confidence 678899998 87655443 47788999999 99999998764 33 37889975 232 0
Q ss_pred eEEEEEeecCCcC---cEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecccccc
Q 046828 438 VHLYKLHRGMTSA---VIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQIQNS 492 (627)
Q Consensus 438 ~~l~~l~rG~t~a---~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~~h~s 492 (627)
..+. .++... .+.+++|||||++|++++.+|+++||.++..++...+..|..
T Consensus 325 ~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~ 379 (741)
T 2ecf_A 325 RVLA---HETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHGNW 379 (741)
T ss_dssp EEEE---EEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCSSS
T ss_pred EEEE---EcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeecce
Confidence 1222 222222 246899999999999999999999999986555444555533
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.50 E-value=2.9e-12 Score=126.57 Aligned_cols=181 Identities=11% Similarity=0.111 Sum_probs=124.1
Q ss_pred CCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCCeEEEEeCCC-CceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 178 SPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAAQIYCFDALT-LESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 178 ~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~~I~i~D~~t-~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
.+.+|++||+.+++......+...|.++++++ ++|+++.++.|++||+.+ ++.......+... .+
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~------------~~ 87 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATI------------CN 87 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCC------------BC
T ss_pred cceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccc------------cc
Confidence 35889999999999887777888999999997 788888899999999999 7755433222111 01
Q ss_pred ceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 255 GPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 255 ~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
..++++| ++|+++...
T Consensus 88 ~~~~~spdg~~l~~~~~~-------------------------------------------------------------- 105 (297)
T 2ojh_A 88 NDHGISPDGALYAISDKV-------------------------------------------------------------- 105 (297)
T ss_dssp SCCEECTTSSEEEEEECT--------------------------------------------------------------
T ss_pred cceEECCCCCEEEEEEeC--------------------------------------------------------------
Confidence 2234433 455554310
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEE-EEeCCCCEEE
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLV-TASIHGNNIN 411 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLa-TaS~dGt~I~ 411 (627)
......|.+||+.+++ ...+..+. .+..++|+|||+.|+ +++.+++ ++
T Consensus 106 ----------------------------~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~-~~ 154 (297)
T 2ojh_A 106 ----------------------------EFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQV-FD 154 (297)
T ss_dssp ----------------------------TTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTE-EE
T ss_pred ----------------------------CCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCc-eE
Confidence 0123455666666654 34454443 489999999999888 7778886 79
Q ss_pred EEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCCCC
Q 046828 412 IFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPFGG 483 (627)
Q Consensus 412 Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~gg 483 (627)
||++... .+ ....+.. + ...+.+++|+||+++|+.++ .+++++||.++..++
T Consensus 155 l~~~~~~-----~~-------------~~~~~~~-~-~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~ 207 (297)
T 2ojh_A 155 IYSMDID-----SG-------------VETRLTH-G-EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS 207 (297)
T ss_dssp EEEEETT-----TC-------------CEEECCC-S-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred EEEEECC-----CC-------------cceEccc-C-CCccccceECCCCCEEEEEecCCCCccEEEECCCCC
Confidence 9997422 11 2233322 2 23589999999999998877 499999999985443
No 140
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.48 E-value=7e-12 Score=128.16 Aligned_cols=88 Identities=6% Similarity=0.004 Sum_probs=65.1
Q ss_pred EEECCCCeE-EEEeccCCCCeEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeec
Q 046828 369 VKDIVSRSV-ISQFRAHTSPISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRG 446 (627)
Q Consensus 369 IwD~~s~~~-l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG 446 (627)
.+|+.+++. +..+..+...+..++|+| ||++|+++ +++ |.+||+. ++ ..+..+..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~-v~~~d~~-------~~------------~~~~~~~~~ 294 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR-LAKYDLK-------QR------------KLIKAANLD 294 (349)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE-EEEEETT-------TT------------EEEEEEECS
T ss_pred EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe-EEEEECc-------cC------------eEEEEEcCC
Confidence 367666643 223345667889999999 99999998 565 8999985 23 133344323
Q ss_pred CCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 447 MTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 447 ~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
..+.+++|+||+++|++++.+++|++|++...
T Consensus 295 ---~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 295 ---HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp ---SCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred ---CCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 23689999999999999999999999998764
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.46 E-value=2.3e-11 Score=125.69 Aligned_cols=104 Identities=8% Similarity=0.203 Sum_probs=69.5
Q ss_pred CCCeEEEEECCC--CeE--EEEeccCC------CCeEEEEECCCCCEEE-EEeCCCCEEEEEeCCCCCCCCCCCCCcccc
Q 046828 363 IAGMVVVKDIVS--RSV--ISQFRAHT------SPISALCFDRSGTLLV-TASIHGNNINIFRIMPSSSKGRSGSASQTY 431 (627)
Q Consensus 363 ~dG~V~IwD~~s--~~~--l~~~~aH~------~~Is~laFspdG~lLa-TaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~ 431 (627)
.++.|.+||+.. ++. +..+..+. ..+..++|+|||++|+ +...+++ |.||++.+. |.
T Consensus 207 ~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~-v~v~~~~~~------g~----- 274 (347)
T 3hfq_A 207 LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT-LAVFAVTAD------GH----- 274 (347)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE-EEEEEECGG------GC-----
T ss_pred CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE-EEEEEECCC------Cc-----
Confidence 457788888763 432 33443333 3488999999999875 4555665 899998521 11
Q ss_pred CCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC-CeEEEEEcCCCCCee
Q 046828 432 DWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR-GTCHIFVLTPFGGET 485 (627)
Q Consensus 432 ~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d-gTvhIw~i~~~gg~~ 485 (627)
...+..+.. . ...+.+++|+|||++|++++.+ ++|.||+++...|..
T Consensus 275 -----~~~~~~~~~-~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 275 -----LTLIQQIST-E-GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp -----EEEEEEEEC-S-SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred -----EEEeEEEec-C-CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 123333322 1 1247899999999999988865 899999998765544
No 142
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.46 E-value=4e-11 Score=124.82 Aligned_cols=105 Identities=12% Similarity=0.222 Sum_probs=73.6
Q ss_pred CCCeEEEEECCCCeE--EEEec---cCCCCeEEEEECCCCCEEEEEeCC-CCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 363 IAGMVVVKDIVSRSV--ISQFR---AHTSPISALCFDRSGTLLVTASIH-GNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~--l~~~~---aH~~~Is~laFspdG~lLaTaS~d-Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
.++.|.+||+.+++. +..+. .|......++|+|||++|+.+..+ ...|+||++.+. +|.
T Consensus 231 ~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-----~g~---------- 295 (361)
T 3scy_A 231 IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-----NGT---------- 295 (361)
T ss_dssp TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-----TCC----------
T ss_pred CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-----CCc----------
Confidence 467899999987643 33333 334557899999999999777765 334899998532 221
Q ss_pred eeEEEEEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCCCCee
Q 046828 437 HVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPFGGET 485 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~gg~~ 485 (627)
...+..+..| ..+.+++|+|||++|++++ .+++|.||+++...+..
T Consensus 296 ~~~~~~~~~g---~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 296 LTKVGYQLTG---IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL 342 (361)
T ss_dssp EEEEEEEECS---SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEEeeEecCC---CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE
Confidence 1133333222 3478999999999999988 67999999998766554
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.46 E-value=2.3e-12 Score=146.65 Aligned_cols=226 Identities=12% Similarity=0.099 Sum_probs=135.5
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCCeEEEEeCCC-----CceeEEEEcCCCCCCCCCCCcCcc-
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAAQIYCFDALT-----LESKFSVLTYPVPHFGGQGTSGVN- 251 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~~I~i~D~~t-----~e~~~tl~~~p~~~~~~~g~~~~~- 251 (627)
.+|++||+.+++..........+.++++++ +.|+.+.++.|++||+.+ ++........... ...|..
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~-----~~~g~~~ 175 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTET-----LVYGQAV 175 (706)
T ss_dssp TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTT-----EEESSCC
T ss_pred CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCC-----eEcccch
Confidence 569999999998776666777888999997 688888889999999998 7654322111100 000000
Q ss_pred -----cccceeeEcC--ceEEEcCCCCC-cCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcc
Q 046828 252 -----IGYGPMAVGP--RWLAYASNNPL-LPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMG 323 (627)
Q Consensus 252 -----~~~~~iAl~~--r~LAy~~~~~~-v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g 323 (627)
-....++++| ++||++..+.. +.... +...+. .
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~--------------------------------------~~~~~~-~ 216 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTP--------------------------------------IVDYHP-L 216 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEE--------------------------------------EEECCS-S
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEE--------------------------------------eeccCC-C
Confidence 0012355654 78888762211 00000 000000 0
Q ss_pred eeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEec--cCCCCeEEEEECCCCCEEE
Q 046828 324 YKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFR--AHTSPISALCFDRSGTLLV 401 (627)
Q Consensus 324 ~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~--aH~~~Is~laFspdG~lLa 401 (627)
+.....+. .| +.| ....+..|.+||+.+++...... .|...+..++|+|||+.|+
T Consensus 217 ~~~~~~~~---y~-------------~~g-------~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 273 (706)
T 2z3z_A 217 EAESKPLY---YP-------------MAG-------TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILY 273 (706)
T ss_dssp SCEEEEEC---CC-------------BTT-------SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEE
T ss_pred CCceEEee---CC-------------CCC-------CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEE
Confidence 00000000 00 000 12345789999999987654442 5677899999999999999
Q ss_pred EEeCCC----CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC---cEEEEEEcc--CCCEEEEEeCCCe
Q 046828 402 TASIHG----NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA---VIQDICFSH--YSQWIAIVSSRGT 472 (627)
Q Consensus 402 TaS~dG----t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a---~I~sIaFSp--Dg~~Las~S~dgT 472 (627)
+++.++ ..|++||+. +|. .+..+....... .+.+++||| ||++|++++.+|+
T Consensus 274 ~~~~~~~~~~~~v~~~d~~-------~g~------------~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~ 334 (706)
T 2z3z_A 274 VAEVNRAQNECKVNAYDAE-------TGR------------FVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW 334 (706)
T ss_dssp EEEECTTSCEEEEEEEETT-------TCC------------EEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred EEEeCCCCCeeEEEEEECC-------CCc------------eeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence 988765 248999985 231 122222111111 246789999 9999999999999
Q ss_pred EEEEEcCCCCCe-eeccccc
Q 046828 473 CHIFVLTPFGGE-TVLQIQN 491 (627)
Q Consensus 473 vhIw~i~~~gg~-~~~~~h~ 491 (627)
++||.++..++. ..+..|.
T Consensus 335 ~~l~~~~~~~~~~~~l~~~~ 354 (706)
T 2z3z_A 335 NHLYLYDTTGRLIRQVTKGE 354 (706)
T ss_dssp CEEEEEETTSCEEEECCCSS
T ss_pred cEEEEEECCCCEEEecCCCC
Confidence 999999854443 3344443
No 144
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.44 E-value=1e-11 Score=135.07 Aligned_cols=102 Identities=11% Similarity=0.144 Sum_probs=77.8
Q ss_pred CCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 361 TDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
++.||+|+|||+.++..+.....|...|.+++|+|+|++||+++.||+ |+|||+. +. ..
T Consensus 168 ~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~-v~iwd~~--------~~------------~~ 226 (434)
T 2oit_A 168 CLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT-VVQYLPT--------LQ------------EK 226 (434)
T ss_dssp EETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSC-EEEECTT--------CC------------EE
T ss_pred EECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCc-EEEEccC--------Cc------------cc
Confidence 457899999999999877777889999999999999999999999998 7999974 11 12
Q ss_pred EEEe--ecC---CcCcEEEEEEccCCCEEEEE-eCCCe------EEEEEcCCCCC
Q 046828 441 YKLH--RGM---TSAVIQDICFSHYSQWIAIV-SSRGT------CHIFVLTPFGG 483 (627)
Q Consensus 441 ~~l~--rG~---t~a~I~sIaFSpDg~~Las~-S~dgT------vhIw~i~~~gg 483 (627)
..+. ... ....|.+|+|++++.++++. +.+|. +++|++...++
T Consensus 227 ~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~ 281 (434)
T 2oit_A 227 KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEE 281 (434)
T ss_dssp EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTT
T ss_pred ccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCC
Confidence 2221 111 11269999999999998664 34433 89999986543
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.40 E-value=4.8e-12 Score=144.06 Aligned_cols=275 Identities=15% Similarity=0.060 Sum_probs=156.1
Q ss_pred EEEEeccCcEEEEecCCCCCceEEeeecCC---ceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeeccC
Q 046828 83 VLLLGYSNGFQVLDVEDATNVSELVSRRDD---PVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVGR 159 (627)
Q Consensus 83 vl~~Gy~~G~qVWdv~~~~~~~ells~~dG---~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~~ 159 (627)
++..+.++.+++||+++.. ...++..++. .|..+.+.|.- ..|+....+...
T Consensus 30 ~~~~~~dg~i~~~d~~~g~-~~~~~~~~~~~~~~v~~~~~SpDg-------------~~l~~~~~~~~~----------- 84 (723)
T 1xfd_A 30 FIYREQKGTVRLWNVETNT-STVLIEGKKIESLRAIRYEISPDR-------------EYALFSYNVEPI----------- 84 (723)
T ss_dssp BCCCCSSSCEEEBCGGGCC-CEEEECTTTTTTTTCSEEEECTTS-------------SEEEEEESCCCC-----------
T ss_pred EEEEeCCCCEEEEECCCCc-EEEEeccccccccccceEEECCCC-------------CEEEEEecCccc-----------
Confidence 4444677889999999855 4566655554 36677776542 566665422110
Q ss_pred cccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecC----CeEEEEEecC--cEEEEEeCCeEEEEeCCCCceeEE
Q 046828 160 DGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFR----STVYMVRCSP--RIVAVGLAAQIYCFDALTLESKFS 233 (627)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~----s~V~sV~~s~--~~LaV~~~~~I~i~D~~t~e~~~t 233 (627)
+ .......|.+||+.+++. ..+... ..|..+++|| +.||.+..++|++||+.+++....
T Consensus 85 --------~------~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~ 149 (723)
T 1xfd_A 85 --------Y------QHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRV 149 (723)
T ss_dssp --------S------SSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEE
T ss_pred --------e------eecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEE
Confidence 0 011347899999999986 444321 2488899998 788888889999999999886544
Q ss_pred EEcCCCCCCCCCCCcC------cccccceeeEcC--ceEEEcCCCCC-cCCCCccCCCCCCCCCCCCCCCCCCCcccchh
Q 046828 234 VLTYPVPHFGGQGTSG------VNIGYGPMAVGP--RWLAYASNNPL-LPNTGRLSPQSLTPPSVSPSTSPSNGNLMARY 304 (627)
Q Consensus 234 l~~~p~~~~~~~g~~~------~~~~~~~iAl~~--r~LAy~~~~~~-v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~ 304 (627)
...+.... .-.|... ..-....++++| ++|||+..+.. +..+.. .....
T Consensus 150 ~~~~~~~~-~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~---~~~~~------------------ 207 (723)
T 1xfd_A 150 VSTGKEGV-IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL---PTYTG------------------ 207 (723)
T ss_dssp ECCCBTTT-EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE---CCCSS------------------
T ss_pred ecCCCCCc-eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEe---eccCC------------------
Confidence 43321110 0000000 000013466665 78888764311 100000 00000
Q ss_pred hhhhhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccC
Q 046828 305 AVESSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAH 384 (627)
Q Consensus 305 a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH 384 (627)
. .......+ .| .++| ....+..|.+||+.+++....+..|
T Consensus 208 ---------~-----~~~~~~~~-~~----~~~G---------------------~~~~~~~l~~~d~~~~~~~~~l~~~ 247 (723)
T 1xfd_A 208 ---------S-----IYPTVKPY-HY----PKAG---------------------SENPSISLHVIGLNGPTHDLEMMPP 247 (723)
T ss_dssp ---------S-----SSCCCEEE-EC----CBTT---------------------SCCCEEEEEEEESSSSCCCEECCCC
T ss_pred ---------c-----CCCcceec-cC----CCCC---------------------CCCCeeEEEEEECCCCceeEEeeCC
Confidence 0 00000000 00 0011 0123458999999998866677765
Q ss_pred ------CCCeEEEEECCCCCEEEEEeCCC---CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcE---
Q 046828 385 ------TSPISALCFDRSGTLLVTASIHG---NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVI--- 452 (627)
Q Consensus 385 ------~~~Is~laFspdG~lLaTaS~dG---t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I--- 452 (627)
...+..++|+|||++|++.+..+ ..|++||+. +|. .. ++........+
T Consensus 248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~-------~g~------------~~-~~~~~~~~~~~~~~ 307 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT-------TGV------------CT-KKHEDESEAWLHRQ 307 (723)
T ss_dssp CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT-------TCC------------EE-EEEEEECSSCCCCC
T ss_pred ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC-------CCc------------ce-EEEEeccCCEEecc
Confidence 56799999999999998876542 348899985 232 11 12122111223
Q ss_pred -EEEEEccCCCEEEE--EeCCC----eEEEEEcC
Q 046828 453 -QDICFSHYSQWIAI--VSSRG----TCHIFVLT 479 (627)
Q Consensus 453 -~sIaFSpDg~~Las--~S~dg----TvhIw~i~ 479 (627)
..++|||||++|+. +..++ +.+||.++
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 308 NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred CCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 37899999998886 45677 77777776
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.37 E-value=3.2e-11 Score=144.56 Aligned_cols=105 Identities=21% Similarity=0.239 Sum_probs=78.9
Q ss_pred CCeEE-EEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 364 AGMVV-VKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 364 dG~V~-IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
++.+. +||+.+++.. .+..|...+..++|+|||++||+++.+++ |++||+. +| .+..
T Consensus 357 ~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~-v~~~d~~-------tg-------------~~~~ 414 (1045)
T 1k32_A 357 EGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFE-IMTVDLE-------TG-------------KPTV 414 (1045)
T ss_dssp TEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSE-EEEEETT-------TC-------------CEEE
T ss_pred CCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCe-EEEEECC-------CC-------------ceEE
Confidence 45677 8898877654 45588889999999999999999999987 7999986 33 2233
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCC----------eEEEEEcCCCCCeeecccccc
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRG----------TCHIFVLTPFGGETVLQIQNS 492 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dg----------TvhIw~i~~~gg~~~~~~h~s 492 (627)
+..++. ..|.+++|||||++||.++.++ +|++|++... ....+..|..
T Consensus 415 ~~~~~~-~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g-~~~~l~~~~~ 472 (1045)
T 1k32_A 415 IERSRE-AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-KIFAATTENS 472 (1045)
T ss_dssp EEECSS-SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT-EEEECSCSSS
T ss_pred eccCCC-CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC-cEEEeeCCCc
Confidence 334543 3589999999999999988755 9999999753 2444555543
No 147
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.37 E-value=2.9e-11 Score=138.16 Aligned_cols=99 Identities=15% Similarity=0.196 Sum_probs=73.2
Q ss_pred CCCeEEEEECCCCeEEEEeccCCC----CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTS----PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~----~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
.+..|.+||+.+++....+..|.. .+..++|+|||++|++++.+|+ ++||.+... + .
T Consensus 310 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~-~~l~~~~~~------~------------~ 370 (741)
T 2ecf_A 310 KKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGF-QHLYRIDSK------G------------K 370 (741)
T ss_dssp SEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSS-CEEEEECSS------S------------C
T ss_pred CeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCc-cEEEEEcCC------C------------C
Confidence 467899999999988777776654 5678999999999999999997 688887421 2 1
Q ss_pred EEEEEeecCCcCcEEEE-EEccCCCEEEEEeC-CC--eEEEEEcCCCCC
Q 046828 439 HLYKLHRGMTSAVIQDI-CFSHYSQWIAIVSS-RG--TCHIFVLTPFGG 483 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sI-aFSpDg~~Las~S~-dg--TvhIw~i~~~gg 483 (627)
+..+..+ + ..|.++ +||||+++|+..+. ++ +++||+++..+.
T Consensus 371 -~~~l~~~-~-~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 371 -AAALTHG-N-WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp -EEESCCS-S-SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred -eeeeeec-c-eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 3334322 2 347777 59999998876554 44 999999976554
No 148
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.36 E-value=1.2e-10 Score=119.33 Aligned_cols=189 Identities=13% Similarity=0.061 Sum_probs=132.7
Q ss_pred CcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe--CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL--AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~--~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
+++|.+||+.+++.+.++.....+..+.+++ +.|.++. ++.|++||+.+++.+..+..+..... .. .
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-~~--------~ 138 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRT-EE--------V 138 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCC-SS--------C
T ss_pred CccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccc-cc--------c
Confidence 3789999999999999999877788899987 5555554 36899999999998877765321100 00 0
Q ss_pred ceeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccc
Q 046828 255 GPMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDF 334 (627)
Q Consensus 255 ~~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~ 334 (627)
.+ ..++-+++.++... + .+.
T Consensus 139 ~~--~~~~~~~~s~dg~~-------------------------------------------l---------~~~------ 158 (353)
T 3vgz_A 139 RP--LQPRELVADDATNT-------------------------------------------V---------YIS------ 158 (353)
T ss_dssp CC--CEEEEEEEETTTTE-------------------------------------------E---------EEE------
T ss_pred CC--CCCceEEECCCCCE-------------------------------------------E---------EEE------
Confidence 00 12244555543210 0 000
Q ss_pred cCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEe
Q 046828 335 IPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFR 414 (627)
Q Consensus 335 ~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwd 414 (627)
....++.|.+||+.+++.+..+..+...+..++|+|+|++|++++.+|. |.+||
T Consensus 159 -------------------------~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-i~~~d 212 (353)
T 3vgz_A 159 -------------------------GIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGE-LITID 212 (353)
T ss_dssp -------------------------EESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSE-EEEEE
T ss_pred -------------------------ecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCe-EEEEE
Confidence 0124688999999999999888867777889999999999999999887 78999
Q ss_pred CCCCCCCCCCCCCccccCCCCceeEEEEEeecCC--cCcEEEEEEccCCCEEEEEeCC-CeEEEEEcCCC
Q 046828 415 IMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMT--SAVIQDICFSHYSQWIAIVSSR-GTCHIFVLTPF 481 (627)
Q Consensus 415 i~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t--~a~I~sIaFSpDg~~Las~S~d-gTvhIw~i~~~ 481 (627)
+. ++ ..+..+.-+.. ...+.+++|+||+++|++++.+ ++|++|++...
T Consensus 213 ~~-------~~------------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 213 TA-------DN------------KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp TT-------TT------------EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred CC-------CC------------eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 85 23 13333332211 2348899999999988877765 99999998654
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.32 E-value=2.2e-11 Score=135.84 Aligned_cols=91 Identities=8% Similarity=0.033 Sum_probs=71.2
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCC-EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGN-NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt-~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
+.|.+||+.+++.. .+..|...+..++|||||++|++++.+|. .|++||+. +|. .. +
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~-------~~~------------~~--~ 232 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPR-------DGS------------VE--D 232 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTT-------TCC------------EE--E
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCC-------CCc------------EE--E
Confidence 46999999988754 67888889999999999999998888882 37899975 231 22 3
Q ss_pred eecCCcCcEEEEE--------EccCCCEEEEEeCCCeEEEEEc
Q 046828 444 HRGMTSAVIQDIC--------FSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 444 ~rG~t~a~I~sIa--------FSpDg~~Las~S~dgTvhIw~i 478 (627)
..++. ..|.+++ |||||+.+++++.+|+++||++
T Consensus 233 ~~~~~-~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 233 LELPS-KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CCCSC-SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ccCCC-cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 34443 2355555 9999999999999999999998
No 150
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.31 E-value=7.7e-10 Score=116.20 Aligned_cols=104 Identities=17% Similarity=0.211 Sum_probs=69.2
Q ss_pred CCeEEEEECC-CCeE--EEEec--cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 364 AGMVVVKDIV-SRSV--ISQFR--AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 364 dG~V~IwD~~-s~~~--l~~~~--aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
++.|.+||+. +++. +..+. .|...+..++|+|||++|++++..+..|.||++.+. +|. ..
T Consensus 166 ~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-----~g~----------~~ 230 (365)
T 1jof_A 166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-----THM----------PV 230 (365)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-----TCC----------EE
T ss_pred CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-----CCc----------EE
Confidence 4689999998 6653 33444 356678999999999999998875445899987532 221 00
Q ss_pred E-EEEEe---ecCCc-C-------cEEEEE-EccCCCEEEEEeCCC------eEEEEEcCCCC
Q 046828 439 H-LYKLH---RGMTS-A-------VIQDIC-FSHYSQWIAIVSSRG------TCHIFVLTPFG 482 (627)
Q Consensus 439 ~-l~~l~---rG~t~-a-------~I~sIa-FSpDg~~Las~S~dg------TvhIw~i~~~g 482 (627)
. ...+. .+... . .+.+++ |||||++|++++.+. +|.||+++..+
T Consensus 231 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g 293 (365)
T 1jof_A 231 YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG 293 (365)
T ss_dssp EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS
T ss_pred EccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCC
Confidence 1 11121 11111 1 488999 999999998876533 89999997533
No 151
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.31 E-value=3.3e-11 Score=137.14 Aligned_cols=100 Identities=13% Similarity=0.222 Sum_probs=67.8
Q ss_pred CCeEEEEECCCCeEEEEec--cCC---CCeEEEEECC--CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 364 AGMVVVKDIVSRSVISQFR--AHT---SPISALCFDR--SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~--aH~---~~Is~laFsp--dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
...|.+||+.+++.+..+. .+. ..+..++|+| ||++|++++.+|+ ++||++... +
T Consensus 283 ~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~-~~l~~~~~~------~----------- 344 (706)
T 2z3z_A 283 ECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW-NHLYLYDTT------G----------- 344 (706)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS-CEEEEEETT------S-----------
T ss_pred eeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc-cEEEEEECC------C-----------
Confidence 4579999999984333332 222 2357789999 9999999999998 799987521 2
Q ss_pred eeEEEEEeecCCcCcEEE-EEEccCCCEEEEEeCCC---eEEEEEcCCCCCe
Q 046828 437 HVHLYKLHRGMTSAVIQD-ICFSHYSQWIAIVSSRG---TCHIFVLTPFGGE 484 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~s-IaFSpDg~~Las~S~dg---TvhIw~i~~~gg~ 484 (627)
..+..+..+ . ..|.+ ++||||+++|+.++.+. .++||.++..++.
T Consensus 345 -~~~~~l~~~-~-~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 345 -RLIRQVTKG-E-WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp -CEEEECCCS-S-SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred -CEEEecCCC-C-eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 144455333 2 34666 79999999998776654 3677766654443
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.31 E-value=1.4e-11 Score=134.03 Aligned_cols=97 Identities=11% Similarity=0.259 Sum_probs=79.4
Q ss_pred CCCCCeEEEEECCCC--------e---EEEEeccCCCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCc
Q 046828 361 TDIAGMVVVKDIVSR--------S---VISQFRAHTSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSAS 428 (627)
Q Consensus 361 ~~~dG~V~IwD~~s~--------~---~l~~~~aH~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~ 428 (627)
++.|+.|+|||+.+. + .+..+.+|..+|.+|+|+|+ +.+||+++.||+ |+|||+. ++
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v~iwD~~-------~~--- 182 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-IAVLQVT-------ET--- 182 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-EEEEEES-------SS---
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-EEEEEcC-------CC---
Confidence 457899999998654 2 25667789999999999998 899999999998 7999996 22
Q ss_pred cccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 429 QTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 429 ~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
..+... .++. ..|.+++|+|||++||+++.||+|+||++.
T Consensus 183 ---------~~~~~~-~~~~-~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 183 ---------VKVCAT-LPST-VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp ---------EEEEEE-ECGG-GCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred ---------cceeec-cCCC-CceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 133333 3443 459999999999999999999999999987
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.30 E-value=2e-09 Score=111.14 Aligned_cols=104 Identities=16% Similarity=0.182 Sum_probs=67.7
Q ss_pred CCCeEEEEECC-CCeE--EEEeccC-CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 363 IAGMVVVKDIV-SRSV--ISQFRAH-TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 363 ~dG~V~IwD~~-s~~~--l~~~~aH-~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
.++.|.+||+. +++. +..+..+ ...+..++|+|||++|+.++..+..|+||++... +|. ..
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-----~g~----------~~ 224 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ-----TGA----------FT 224 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT-----TTE----------EE
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC-----CCc----------eE
Confidence 46789999998 4432 2333333 2357889999999977776655445899998621 121 01
Q ss_pred EEEEEeecCCc-----CcEEEEEEccCCCEEEE-EeCCCeEEEEEcCCCC
Q 046828 439 HLYKLHRGMTS-----AVIQDICFSHYSQWIAI-VSSRGTCHIFVLTPFG 482 (627)
Q Consensus 439 ~l~~l~rG~t~-----a~I~sIaFSpDg~~Las-~S~dgTvhIw~i~~~g 482 (627)
.+..+.. ... ..+..++|||||++|++ ...+++|+||+++..+
T Consensus 225 ~~~~~~~-~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g 273 (347)
T 3hfq_A 225 QLGIVKT-IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG 273 (347)
T ss_dssp EEEEEES-SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred Eeeeeee-cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence 2222211 111 24899999999998854 5568999999997543
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.30 E-value=1.5e-09 Score=112.87 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=67.8
Q ss_pred CCCeEEEEECCCCe-------E------EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcc
Q 046828 363 IAGMVVVKDIVSRS-------V------ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQ 429 (627)
Q Consensus 363 ~dG~V~IwD~~s~~-------~------l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~ 429 (627)
.++.|.+||+.... . ......+...+..++|+|||++|+.++.....|++||+. +|.
T Consensus 175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~-------~g~--- 244 (361)
T 3scy_A 175 GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYA-------DGM--- 244 (361)
T ss_dssp TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEE-------TTE---
T ss_pred CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEec-------CCc---
Confidence 46788999876433 1 111223445678999999999988888533348999985 221
Q ss_pred ccCCCCceeEEEEEeecCC-cCcEEEEEEccCCCEEEEEeCC--CeEEEEEcCCCCC
Q 046828 430 TYDWTSSHVHLYKLHRGMT-SAVIQDICFSHYSQWIAIVSSR--GTCHIFVLTPFGG 483 (627)
Q Consensus 430 ~~~~~~~~~~l~~l~rG~t-~a~I~sIaFSpDg~~Las~S~d--gTvhIw~i~~~gg 483 (627)
...+..+..... .....+|+|||||++|+++..+ ++|.||++++..+
T Consensus 245 -------~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g 294 (361)
T 3scy_A 245 -------LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG 294 (361)
T ss_dssp -------EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC
T ss_pred -------eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC
Confidence 012222221111 1236899999999999877765 8999999985443
No 155
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.27 E-value=1e-09 Score=115.27 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=53.9
Q ss_pred CeEEEE-ECCCCCEEEEEeCCCC-----EEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEcc-
Q 046828 387 PISALC-FDRSGTLLVTASIHGN-----NINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSH- 459 (627)
Q Consensus 387 ~Is~la-FspdG~lLaTaS~dGt-----~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSp- 459 (627)
.+..++ |+|||++|++++.... .|+||++.+. |. ...+..+.... ...+..++|+|
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~------g~----------~~~~~~~~~~~-~~~~~~~a~sp~ 317 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC------GS----------IEKQLFLSPTP-TSGGHSNAVSPC 317 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT------SC----------EEEEEEEEECS-SCCTTCCCEEEC
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC------CC----------EEEeeeeeecC-CCCcccceecCC
Confidence 488999 9999999988765443 5899998521 21 01111111211 12356789999
Q ss_pred --CCCEEEEEeCC-CeEEEEEcCCC
Q 046828 460 --YSQWIAIVSSR-GTCHIFVLTPF 481 (627)
Q Consensus 460 --Dg~~Las~S~d-gTvhIw~i~~~ 481 (627)
||++|++++.+ ++|.||+++..
T Consensus 318 ~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 318 PWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999999875 89999999753
No 156
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.25 E-value=8.5e-10 Score=111.76 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=46.6
Q ss_pred cEEEEEECCCCceEEEEecCC---eEEEEEecC--cEEEEEe--CCeEEEEeCCCCceeEEEE
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS---TVYMVRCSP--RIVAVGL--AAQIYCFDALTLESKFSVL 235 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s---~V~sV~~s~--~~LaV~~--~~~I~i~D~~t~e~~~tl~ 235 (627)
++|.+||+.+++.+.++.... .+..+++++ +.|+++. +++|++||+.+++.+..+.
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 73 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE
Confidence 679999999999999999777 688999987 4565554 4589999999999877765
No 157
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.24 E-value=3.1e-10 Score=136.06 Aligned_cols=95 Identities=8% Similarity=0.007 Sum_probs=77.4
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC---------CEEEEEeCCCCCCCCCCCCCccccCC
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG---------NNINIFRIMPSSSKGRSGSASQTYDW 433 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG---------t~I~Vwdi~p~~~~~~~g~~~~~~~~ 433 (627)
.++.|++||+.+++....+..|..+|..++|+|||++||+++.++ ..|++||+. ++
T Consensus 398 ~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~-------~g-------- 462 (1045)
T 1k32_A 398 DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME-------GR-------- 462 (1045)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT-------TT--------
T ss_pred CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC-------CC--------
Confidence 456899999999988888889999999999999999999988754 348999985 22
Q ss_pred CCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 434 TSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 434 ~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
.+..+. ++ ...+.+++|+|||++|+..+.++...+|+..
T Consensus 463 -----~~~~l~-~~-~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 463 -----KIFAAT-TE-NSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp -----EEEECS-CS-SSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred -----cEEEee-CC-CcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 344442 32 2348899999999999999999999999865
No 158
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.23 E-value=1.2e-10 Score=132.45 Aligned_cols=52 Identities=8% Similarity=0.072 Sum_probs=43.0
Q ss_pred CcEEEEEECCCCceEEEEecCC----eEEEEEecC--cEEEEEeC----------CeEEEEeCCCCce
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRS----TVYMVRCSP--RIVAVGLA----------AQIYCFDALTLES 230 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s----~V~sV~~s~--~~LaV~~~----------~~I~i~D~~t~e~ 230 (627)
+++|++||+.+++....+..+. .|.+++||+ +.|+.+.. ..|++||+.+++.
T Consensus 36 dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 103 (723)
T 1xfd_A 36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP 103 (723)
T ss_dssp SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC
T ss_pred CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce
Confidence 3679999999999988887654 389999998 77887764 5799999999875
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.18 E-value=7.5e-11 Score=134.62 Aligned_cols=283 Identities=14% Similarity=0.072 Sum_probs=155.0
Q ss_pred eEEEEeccCcEEEEecCCCCCceEEeeecCC---ceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeecc
Q 046828 82 HVLLLGYSNGFQVLDVEDATNVSELVSRRDD---PVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVG 158 (627)
Q Consensus 82 ~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG---~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~ 158 (627)
+++..+.++.+.+||+..+. .+.++..+.. .+..+.+.|.- ..||+.. +..
T Consensus 28 ~~~~~~~d~~i~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~SpDg-------------~~la~~~-~~~----------- 81 (719)
T 1z68_A 28 EYLHQSADNNIVLYNIETGQ-SYTILSNRTMKSVNASNYGLSPDR-------------QFVYLES-DYS----------- 81 (719)
T ss_dssp EEEEECTTSCEEEEESSSCC-EEEEECHHHHHTTTCSEEEECTTS-------------SEEEEEE-EEE-----------
T ss_pred eEEEEcCCCCEEEEEcCCCc-EEEEEccccccccceeeEEECCCC-------------CeEEEEe-cCc-----------
Confidence 56767778899999999755 4555544432 26666766532 5666543 110
Q ss_pred CcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCCeEEEEeCCCCceeEEEEc
Q 046828 159 RDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.|. ...+.+|++||+.+++.+...+....+.++++|| +.||.+.+++|++||+.+++... +..
T Consensus 82 -------~~~~------~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~-l~~ 147 (719)
T 1z68_A 82 -------KLWR------YSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQ-ITF 147 (719)
T ss_dssp -------ECSS------SCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEE-CCC
T ss_pred -------eeEE------eecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEE-Eec
Confidence 0010 0113689999999998743233456788999998 78888888999999999987643 221
Q ss_pred CCCCCCCCCCCcCc------ccccceeeEcC--ceEEEcCCCC-CcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhh
Q 046828 237 YPVPHFGGQGTSGV------NIGYGPMAVGP--RWLAYASNNP-LLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVE 307 (627)
Q Consensus 237 ~p~~~~~~~g~~~~------~~~~~~iAl~~--r~LAy~~~~~-~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~ 307 (627)
.......-.|.+.. ......++++| ++|||+..+. .+..+
T Consensus 148 ~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~------------------------------- 196 (719)
T 1z68_A 148 NGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVI------------------------------- 196 (719)
T ss_dssp CCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEE-------------------------------
T ss_pred CCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceE-------------------------------
Confidence 11100000000000 00012466665 7899876321 11000
Q ss_pred hhhhhhcceeecCCcceeEEeeeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEE--------E
Q 046828 308 SSKQLAAGLINLGDMGYKTLSRYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVI--------S 379 (627)
Q Consensus 308 ~~k~l~~gl~~lg~~g~~~~s~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l--------~ 379 (627)
.+...++..+.....+. .| +.| .......|.+||+.+++.+ .
T Consensus 197 -------~~~~~~~~~~~~~~~~~---yp-------------~~g-------~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 246 (719)
T 1z68_A 197 -------AYSYYGDEQYPRTINIP---YP-------------KAG-------AKNPVVRIFIIDTTYPAYVGPQEVPVPA 246 (719)
T ss_dssp -------EEEECCSSSSCEEEEEE---CC-------------BTT-------SCCCEEEEEEEESSCHHHHCCEECCCCH
T ss_pred -------EeeccCCCCCccceeec---CC-------------CCC-------CCCCeeEEEEEECCCCCccceeEccCCc
Confidence 00000000111111110 00 001 1123457999999987642 1
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEeCCC---CEEEEEe----CCCCCCCCCCCCCccccCCCCceeEEEE-EeecCCcCc
Q 046828 380 QFRAHTSPISALCFDRSGTLLVTASIHG---NNINIFR----IMPSSSKGRSGSASQTYDWTSSHVHLYK-LHRGMTSAV 451 (627)
Q Consensus 380 ~~~aH~~~Is~laFspdG~lLaTaS~dG---t~I~Vwd----i~p~~~~~~~g~~~~~~~~~~~~~~l~~-l~rG~t~a~ 451 (627)
.+..|...+..++|+|||+++++....+ ..|.+|| +. +|.. ..+.+ .+.++. ..
T Consensus 247 ~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~-------~g~~----------~~~~~~~~~~~~-~~ 308 (719)
T 1z68_A 247 MIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ-------TWDC----------PKTQEHIEESRT-GW 308 (719)
T ss_dssp HHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS-------SEEC----------CGGGEEEEECSS-SC
T ss_pred cCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC-------CCce----------EEEEecccccCC-ce
Confidence 2346888899999999999888865432 1367788 53 2210 01110 012332 23
Q ss_pred EE-----EEEEccCCCEEEE--EeCCCeEEEEEcCCCCC
Q 046828 452 IQ-----DICFSHYSQWIAI--VSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 452 I~-----sIaFSpDg~~Las--~S~dgTvhIw~i~~~gg 483 (627)
|. .++|||||++|+. +..+|..+||.++..++
T Consensus 309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~ 347 (719)
T 1z68_A 309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE 347 (719)
T ss_dssp SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST
T ss_pred EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC
Confidence 44 7899999997665 55678777777665444
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.17 E-value=4.4e-10 Score=125.31 Aligned_cols=101 Identities=12% Similarity=0.010 Sum_probs=69.9
Q ss_pred EEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC----CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 367 VVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH----GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 367 V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d----Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
+.|||+.+++.......+. .+++|||||++||+++.+ ++ |++||+. +|. +..
T Consensus 134 ~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~-i~~~d~~-------~g~-------------~~~ 189 (582)
T 3o4h_A 134 VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVS-LFTSNLS-------SGG-------------LRV 189 (582)
T ss_dssp EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEE-EEEEETT-------TCC-------------CEE
T ss_pred ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeE-EEEEcCC-------CCC-------------ceE
Confidence 4499999887654444333 789999999999988876 44 8899975 231 223
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCC--eEEEEEcCCCCCeeecccccccc
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRG--TCHIFVLTPFGGETVLQIQNSHV 494 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dg--TvhIw~i~~~gg~~~~~~h~s~v 494 (627)
+ .++. ..+.+++|||||++|+++..++ +|++|+++..... .+..|...+
T Consensus 190 l-~~~~-~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~ 240 (582)
T 3o4h_A 190 F-DSGE-GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDF 240 (582)
T ss_dssp E-CCSS-CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHH
T ss_pred e-ecCC-CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcCh
Confidence 3 3332 3589999999999999888899 7888887643322 334444333
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.15 E-value=4.7e-09 Score=107.04 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=46.7
Q ss_pred cEEEEEECCCCceEEEEecCC--eEEEEEecC--cEEEEEe--CCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS--TVYMVRCSP--RIVAVGL--AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s--~V~sV~~s~--~~LaV~~--~~~I~i~D~~t~e~~~tl~~ 236 (627)
++|.+||+.+++.++++..+. .+..+++++ +.+.++. +++|++||+.+++.+..+..
T Consensus 21 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 21 NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 679999999999999998776 788899987 5555543 46899999999988777753
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.07 E-value=8.4e-10 Score=125.93 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=42.2
Q ss_pred cEEEEEECCCCceEEEEecCCe----EEEEEecC--cEEEEEeC----------CeEEEEeCCCCce
Q 046828 180 TAVRFYSLRSHNYVHVLRFRST----VYMVRCSP--RIVAVGLA----------AQIYCFDALTLES 230 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~----V~sV~~s~--~~LaV~~~----------~~I~i~D~~t~e~ 230 (627)
++|++||+.+++....+..+.. |.++++|+ +.|+.+.. ++|++||+.+++.
T Consensus 36 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~ 102 (719)
T 1z68_A 36 NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF 102 (719)
T ss_dssp SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence 5699999999998887776543 89999998 77877654 6899999999875
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.06 E-value=2.9e-08 Score=103.45 Aligned_cols=127 Identities=7% Similarity=-0.023 Sum_probs=71.0
Q ss_pred CCCeEEEEeccCcEEEEecCCCCCceEEeeecCCceEEEEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeeecc
Q 046828 79 SFKHVLLLGYSNGFQVLDVEDATNVSELVSRRDDPVTFLQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVHVG 158 (627)
Q Consensus 79 ~~~~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V~~v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~~~ 158 (627)
+++.++....+..+.+||++... ...+...+.+.+....+...|. + .+|+.+..+... ..+ ...
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~d------g-----~~l~~~~~~~~~-~~~---~~~ 154 (388)
T 3pe7_A 91 DDDALFYVKDGRNLMRVDLATLE-ENVVYQVPAEWVGYGTWVANSD------C-----TKLVGIEIRRED-WVP---LTD 154 (388)
T ss_dssp TSSEEEEEETTTEEEEEETTTCC-EEEEEECCTTEEEEEEEEECTT------S-----SEEEEEEEEGGG-CCC---CCS
T ss_pred CCCEEEEEeCCCeEEEEECCCCc-ceeeeechhhcccccceeECCC------C-----CeeccccccCcc-ccc---ccc
Confidence 34677777777889999999754 3455555555554444443442 1 344322211100 000 000
Q ss_pred CcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC---cEEEEEeC-------CeEEEEeCCCC
Q 046828 159 RDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP---RIVAVGLA-------AQIYCFDALTL 228 (627)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~---~~LaV~~~-------~~I~i~D~~t~ 228 (627)
...-.. .. .......|.+||+++++..........+..+.+++ +.|+.... .+|+++|+.+.
T Consensus 155 ~~~~~~--~~------~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~ 226 (388)
T 3pe7_A 155 WKKFHE--FY------FTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT 226 (388)
T ss_dssp HHHHHH--HG------GGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC
T ss_pred cchhhh--hh------ccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence 000000 00 00123789999999998766666677889999998 46665543 26899998765
Q ss_pred c
Q 046828 229 E 229 (627)
Q Consensus 229 e 229 (627)
+
T Consensus 227 ~ 227 (388)
T 3pe7_A 227 N 227 (388)
T ss_dssp C
T ss_pred c
Confidence 4
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.02 E-value=5.2e-08 Score=101.51 Aligned_cols=97 Identities=9% Similarity=0.023 Sum_probs=56.7
Q ss_pred CeEEEEECCCCeEEEEeccCC--CCeEEEEECCCCCEEEEEeCC-CC---EEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 365 GMVVVKDIVSRSVISQFRAHT--SPISALCFDRSGTLLVTASIH-GN---NINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~--~~Is~laFspdG~lLaTaS~d-Gt---~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
..|.++|+..++. ..+..+. ..+..++|+|||+.|+..+.+ |. .|.+||+. +|. ..
T Consensus 216 ~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~-------~g~----------~~ 277 (388)
T 3pe7_A 216 ARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPE-------TLE----------NR 277 (388)
T ss_dssp CSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTT-------TCC----------EE
T ss_pred ceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecC-------CCc----------eE
Confidence 4577778765543 3444444 357889999999988765542 32 27899985 232 12
Q ss_pred EEEEEeecCCcC--cEEEEEEccCCCEEEEE---------eCCCeEEEEEcCC
Q 046828 439 HLYKLHRGMTSA--VIQDICFSHYSQWIAIV---------SSRGTCHIFVLTP 480 (627)
Q Consensus 439 ~l~~l~rG~t~a--~I~sIaFSpDg~~Las~---------S~dgTvhIw~i~~ 480 (627)
.+..+ .+.... ....++|||||++|+.. ..+..|++|++..
T Consensus 278 ~l~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 278 QLTSM-PACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp EEEEE-CCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred EEEcC-CCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 33333 221000 01224799999999975 4456888888864
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.02 E-value=1.6e-06 Score=86.82 Aligned_cols=96 Identities=17% Similarity=0.155 Sum_probs=69.2
Q ss_pred CCCeEEEEECCCCeEEEEeccC--CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAH--TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH--~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
.++.|.+||.. ++.+..+..+ ...+..|+|+|+|+++++...++..|++||.. |. .+
T Consensus 183 ~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--------g~------------~~ 241 (286)
T 1q7f_A 183 RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--------GQ------------LI 241 (286)
T ss_dssp GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--------SC------------EE
T ss_pred CCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--------CC------------EE
Confidence 35789999974 4566666544 35789999999999999888775238999853 21 34
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
..+..+.....+.+|+|+|||+++++ +.+++|+||++..
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 242 SALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 44433322234889999999986666 6799999999764
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.99 E-value=1.3e-08 Score=117.49 Aligned_cols=110 Identities=17% Similarity=0.166 Sum_probs=72.0
Q ss_pred eEEEEeccCcEEEEecCCCCCceEEeeecCCce---EE--EEEeeCCCCCCCCCCcCCCCCEEEEEEccCccCCcceeee
Q 046828 82 HVLLLGYSNGFQVLDVEDATNVSELVSRRDDPV---TF--LQMQPLPAKSDGQEGFRNSHPLLLVVACDEAKNSGLVHVH 156 (627)
Q Consensus 82 ~vl~~Gy~~G~qVWdv~~~~~~~ells~~dG~V---~~--v~~lp~p~~~~~~D~f~~~rpLlavv~~d~~~~~g~~~~~ 156 (627)
+++..+ ++.+.+||+.++. ...++..+...+ .+ +.+.| ....|++...+...
T Consensus 29 ~~~~~~-~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sp-------------dg~~l~~~~~~~~~-------- 85 (740)
T 4a5s_A 29 EYLYKQ-ENNILVFNAEYGN-SSVFLENSTFDEFGHSINDYSISP-------------DGQFILLEYNYVKQ-------- 85 (740)
T ss_dssp EEEEEE-TTEEEEEETTTCC-EEEEECTTTTTTCCSCCCEEEECT-------------TSSEEEEEEEEEEC--------
T ss_pred cEEEEc-CCcEEEEECCCCc-eEEEEechhhhhhcccccceEECC-------------CCCEEEEEECCeee--------
Confidence 566666 8899999999865 355666554321 22 33332 23566665422110
Q ss_pred ccCcccccCCCCCCCCCCCCcCCcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEeCCeEEEEeCCCCcee
Q 046828 157 VGRDGLVRDGYDEPQPGNVAMSPTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGLAAQIYCFDALTLESK 231 (627)
Q Consensus 157 ~~~~~~~~~g~~~~~~~~~~~~~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~~~~I~i~D~~t~e~~ 231 (627)
-| ......+.+||+++++......+...+..+++|| +.||.+.+..|++||+.+++..
T Consensus 86 ------~r-----------~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 86 ------WR-----------HSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSY 145 (740)
T ss_dssp ------SS-----------SCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCE
T ss_pred ------EE-----------EccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceE
Confidence 00 0112568899999998654333566899999998 7889888999999999988743
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.95 E-value=9.9e-08 Score=100.76 Aligned_cols=54 Identities=9% Similarity=0.078 Sum_probs=43.8
Q ss_pred cEEEEEECCCCceEEEEecC-------CeEEEEEecC--cEEEEEe---CCeEEEEeCCCCceeEE
Q 046828 180 TAVRFYSLRSHNYVHVLRFR-------STVYMVRCSP--RIVAVGL---AAQIYCFDALTLESKFS 233 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~-------s~V~sV~~s~--~~LaV~~---~~~I~i~D~~t~e~~~t 233 (627)
.+|.+||+.+++.+.++... .....|++++ ++|.|+. ++.|.+||+.+++.+.+
T Consensus 81 ~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 81 DVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED 146 (361)
T ss_dssp EEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred CEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence 67999999999999999753 3467789986 7777764 35799999999987766
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.94 E-value=2.1e-08 Score=115.65 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=39.2
Q ss_pred cEEEEEECCCCceEEEEecCC-e-----EEEEEecC--cEEEEEeC----------CeEEEEeCCCCcee
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS-T-----VYMVRCSP--RIVAVGLA----------AQIYCFDALTLESK 231 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s-~-----V~sV~~s~--~~LaV~~~----------~~I~i~D~~t~e~~ 231 (627)
++|++||+++++....+..+. . ..++.+|+ +.|+.+.. +.+++||+.+++..
T Consensus 36 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~ 105 (740)
T 4a5s_A 36 NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI 105 (740)
T ss_dssp TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC
T ss_pred CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE
Confidence 679999999999887776543 2 23477787 67777765 56789999998753
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.91 E-value=1.2e-07 Score=106.74 Aligned_cols=100 Identities=16% Similarity=0.199 Sum_probs=69.8
Q ss_pred CeEEEEECC-CC---eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 365 GMVVVKDIV-SR---SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 365 G~V~IwD~~-s~---~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
..|.+||+. ++ +.......|...+..++|+|||+++++++.+|+ ++||.+... .+ .+
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~-~~l~~~~~~-----~~-------------~~ 277 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW-WNLHRVDPA-----TG-------------AA 277 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSS-CEEEEECTT-----TC-------------CE
T ss_pred cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCC-eEEEEEECC-----CC-------------ce
Confidence 479999998 56 444444556788999999999998888888885 466655321 12 12
Q ss_pred EEEeecCCcC-------cEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 441 YKLHRGMTSA-------VIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 441 ~~l~rG~t~a-------~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
.++..+.... .+.+++|++|++++++++. ++++||.++..++.
T Consensus 278 ~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 278 TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred eecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence 2232222111 1567999999999999999 99999987765443
No 170
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.87 E-value=1.6e-06 Score=89.86 Aligned_cols=180 Identities=10% Similarity=0.021 Sum_probs=114.0
Q ss_pred cEEEEEECCCCceEEEEecCC------eEEEEEecCcEEEEEe---CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS------TVYMVRCSPRIVAVGL---AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGV 250 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s------~V~sV~~s~~~LaV~~---~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~ 250 (627)
+.|.+||+++++.+.++.... ....|.+..+.|.|+. +++|.+||+.+++.+.++.....|
T Consensus 105 ~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p---------- 174 (328)
T 3dsm_A 105 YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQP---------- 174 (328)
T ss_dssp SEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCB----------
T ss_pred CeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCc----------
Confidence 679999999999998888655 5566666665555553 568999999999988777542222
Q ss_pred ccccceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEe
Q 046828 251 NIGYGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLS 328 (627)
Q Consensus 251 ~~~~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s 328 (627)
..+++++ ++++.+...
T Consensus 175 ----~~i~~~~dG~l~v~~~~~---------------------------------------------------------- 192 (328)
T 3dsm_A 175 ----TSLVMDKYNKMWTITDGG---------------------------------------------------------- 192 (328)
T ss_dssp ----CCCEECTTSEEEEEBCCB----------------------------------------------------------
T ss_pred ----cceEEcCCCCEEEEECCC----------------------------------------------------------
Confidence 1133332 211111100
Q ss_pred eeeccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccC-CCCeEEEEECCCCCEEEEEeCCC
Q 046828 329 RYYQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAH-TSPISALCFDRSGTLLVTASIHG 407 (627)
Q Consensus 329 ~y~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH-~~~Is~laFspdG~lLaTaS~dG 407 (627)
| +. .. .....+.|.++|..+++.+..+... ......|+|+|||++|..+..
T Consensus 193 -~------~~--------~~-----------~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-- 244 (328)
T 3dsm_A 193 -Y------EG--------SP-----------YGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-- 244 (328)
T ss_dssp -C------TT--------CS-----------SCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--
T ss_pred -c------cC--------Cc-----------cccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--
Confidence 0 00 00 0113578999999999887777643 236789999999999988765
Q ss_pred CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEE-----eCCCeEEEEEcC
Q 046828 408 NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIV-----SSRGTCHIFVLT 479 (627)
Q Consensus 408 t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~-----S~dgTvhIw~i~ 479 (627)
+ |.+||+. ++.. ....+... .......|+++|++..|.++ ..+++|.+|+.+
T Consensus 245 ~-v~~~d~~-------t~~~-----------~~~~~~~~-~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 245 D-IWRMPVE-------ADRV-----------PVRPFLEF-RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp S-EEEEETT-------CSSC-----------CSSCSBCC-CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred E-EEEEECC-------CCce-----------eeeeeecC-CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 4 7889975 2210 00000010 02347899999955544444 578999999986
No 171
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.83 E-value=6.3e-07 Score=91.88 Aligned_cols=86 Identities=8% Similarity=0.074 Sum_probs=55.6
Q ss_pred eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC-------CEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG-------NNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG-------t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
.|.++| +++ +..+..+ ..+..+ +|||+.|+.++.++ ..|.+|| . +
T Consensus 201 ~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-~--------~------------- 252 (347)
T 2gop_A 201 DIYIWE--DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-G--------K------------- 252 (347)
T ss_dssp EEEEEE--TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-S--------S-------------
T ss_pred cEEEeC--CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC-C--------C-------------
Confidence 456666 444 3344444 455544 99999999888653 2355665 2 1
Q ss_pred EEEEEeecCCcCcEEE-EEEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 439 HLYKLHRGMTSAVIQD-ICFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~s-IaFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
...++..++. ..|.. ++|+ |+ ++++++.+++++|| ++ .+..
T Consensus 253 ~~~~l~~~~~-~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~-~g~~ 294 (347)
T 2gop_A 253 EVMGILDEVD-RGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW-DGEI 294 (347)
T ss_dssp CEEESSTTCC-SEEEEEEEET-TE-EEEEEEETTEEEEE-EE-SSSE
T ss_pred ceEeccccCC-cccCCccEEc-Cc-EEEEEecCCcEEEE-Ec-CCce
Confidence 1233333332 35776 9999 99 99999999999999 88 4443
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.83 E-value=1.5e-06 Score=89.06 Aligned_cols=97 Identities=15% Similarity=0.234 Sum_probs=69.2
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEE-EEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISA-LCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~-laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
...|.+|| +++....+..|...+.. ++|+ || ++++++.+|+ ++|| +. . | .+.+
T Consensus 243 ~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~-~~l~-~~-~------g-------------~~~~ 296 (347)
T 2gop_A 243 HNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS-VNLY-IW-D------G-------------EIKP 296 (347)
T ss_dssp SCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTE-EEEE-EE-S------S-------------SEEE
T ss_pred cceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCc-EEEE-Ec-C------C-------------ceEE
Confidence 45788888 55555555567778886 9999 99 9999999997 7999 85 2 2 1223
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeE-EEEEcCCCCCeeecccccc
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTC-HIFVLTPFGGETVLQIQNS 492 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTv-hIw~i~~~gg~~~~~~h~s 492 (627)
+..+ ...|.+++|+| +++++.+.+++. +||.++ +....+..|+.
T Consensus 297 ~~~~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~--g~~~~lt~~n~ 341 (347)
T 2gop_A 297 IAKG--RHWIMGFDVDE--IVVYLKETATRLRELFTWD--GEEKQLTDYND 341 (347)
T ss_dssp EECS--SSEEEEEEESS--SEEEEEECSSSCCEEEEES--SSEEECCCTTS
T ss_pred EecC--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC--CcEEEeccccH
Confidence 3333 34699999999 788888888776 899987 44445555544
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.83 E-value=6.4e-08 Score=100.55 Aligned_cols=102 Identities=15% Similarity=0.120 Sum_probs=62.6
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEeCC---------------CCEEEEEeCCCCCCCCCCCCCc
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDR-SGTLLVTASIH---------------GNNINIFRIMPSSSKGRSGSAS 428 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~d---------------Gt~I~Vwdi~p~~~~~~~g~~~ 428 (627)
+.|.+||+.+++...... .. ... ++|+| ||++|++++.+ ...|.+||+. .+.
T Consensus 264 ~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~-------~~~-- 331 (396)
T 3c5m_A 264 RVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK-------AKS-- 331 (396)
T ss_dssp EEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT-------TTB--
T ss_pred ceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc-------cCc--
Confidence 569999998876433221 11 233 89999 99999986521 2347889875 221
Q ss_pred cccCCCCceeEEEEEeecCCc---------CcEEEEEEccCCCEEEEEeC-CCeEEEEEcCCCCCeeeccc
Q 046828 429 QTYDWTSSHVHLYKLHRGMTS---------AVIQDICFSHYSQWIAIVSS-RGTCHIFVLTPFGGETVLQI 489 (627)
Q Consensus 429 ~~~~~~~~~~~l~~l~rG~t~---------a~I~sIaFSpDg~~Las~S~-dgTvhIw~i~~~gg~~~~~~ 489 (627)
+.++...... ..+..++|+|||++|+..+. +++.+||.++..++...+..
T Consensus 332 -----------~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~~~ 391 (396)
T 3c5m_A 332 -----------AQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHLEH 391 (396)
T ss_dssp -----------CCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC----
T ss_pred -----------eEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccccccc
Confidence 1122121110 02566899999999988775 67889998886666655443
No 174
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.75 E-value=1.6e-06 Score=89.87 Aligned_cols=177 Identities=6% Similarity=-0.010 Sum_probs=115.7
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC-cEEEEEe--CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccce
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP-RIVAVGL--AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYGP 256 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~-~~LaV~~--~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~~ 256 (627)
++|.+||.++++.+.++........|++++ ..|.++. +++|++||+.+++...++...... +.
T Consensus 64 ~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~-----~~--------- 129 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD-----ME--------- 129 (328)
T ss_dssp TEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC-----TT---------
T ss_pred CEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc-----cc---------
Confidence 679999999999999997656778888843 4454444 679999999999877776532210 00
Q ss_pred eeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeeccccC
Q 046828 257 MAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFIP 336 (627)
Q Consensus 257 iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~p 336 (627)
. -.|.-||+.. . + + | +.
T Consensus 130 ~-~~p~~i~~~~-~-------~-------------------------------------l-------y--v~-------- 146 (328)
T 3dsm_A 130 S-GSTEQMVQYG-K-------Y-------------------------------------V-------Y--VN-------- 146 (328)
T ss_dssp T-CBCCCEEEET-T-------E-------------------------------------E-------E--EE--------
T ss_pred C-CCcceEEEEC-C-------E-------------------------------------E-------E--EE--------
Confidence 0 0112233311 0 0 0 0 00
Q ss_pred CCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC----------
Q 046828 337 DGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH---------- 406 (627)
Q Consensus 337 ~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d---------- 406 (627)
..+.++.|.++|+.+++.+..+..... ...++|+|+|++++++..+
T Consensus 147 -----------------------~~~~~~~v~viD~~t~~~~~~i~~g~~-p~~i~~~~dG~l~v~~~~~~~~~~~~~~~ 202 (328)
T 3dsm_A 147 -----------------------CWSYQNRILKIDTETDKVVDELTIGIQ-PTSLVMDKYNKMWTITDGGYEGSPYGYEA 202 (328)
T ss_dssp -----------------------ECTTCCEEEEEETTTTEEEEEEECSSC-BCCCEECTTSEEEEEBCCBCTTCSSCBCC
T ss_pred -----------------------cCCCCCEEEEEECCCCeEEEEEEcCCC-ccceEEcCCCCEEEEECCCccCCccccCC
Confidence 011367899999999998888875433 4678999999988887654
Q ss_pred CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 407 GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 407 Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
+. |.+||.. ++. ....+.-.. ......|+|+||+++|.++.. +|.+|++..
T Consensus 203 ~~-v~~id~~-------t~~------------v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t 253 (328)
T 3dsm_A 203 PS-LYRIDAE-------TFT------------VEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEA 253 (328)
T ss_dssp CE-EEEEETT-------TTE------------EEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTC
T ss_pred ce-EEEEECC-------CCe------------EEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCC
Confidence 44 7888864 221 222222110 124789999999999988765 888888753
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.71 E-value=5.3e-06 Score=85.70 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=70.0
Q ss_pred CCCeEEEEECCCCeEEEEec--cCCCCeEEEEECCCCCEEEEEe-------CCCCEEEEEeCCCCCCCCCCCCCccccCC
Q 046828 363 IAGMVVVKDIVSRSVISQFR--AHTSPISALCFDRSGTLLVTAS-------IHGNNINIFRIMPSSSKGRSGSASQTYDW 433 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~--aH~~~Is~laFspdG~lLaTaS-------~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~ 433 (627)
.++.|++||..+++.+..+. .+...+..++|+| |.++++.+ .+.+ |++|+.. +|.
T Consensus 216 ~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~-v~~~~~~-------~g~------- 279 (329)
T 3fvz_A 216 ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQ-GFVMNFS-------SGE------- 279 (329)
T ss_dssp TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCC-EEEEETT-------TCC-------
T ss_pred CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcE-EEEEEcC-------CCe-------
Confidence 56789999999888888884 4667899999999 54444433 3335 7899975 332
Q ss_pred CCceeEEEEEe--ecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 434 TSSHVHLYKLH--RGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 434 ~~~~~~l~~l~--rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.+..+. .+. ...+.+|+|+|||+.+++...+++|++|+++.
T Consensus 280 -----~~~~~~~~~~~-~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 280 -----IIDVFKPVRKH-FDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp -----EEEEECCSSSC-CSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred -----EEEEEcCCCCc-cCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 344432 122 12489999999998888888999999999864
No 176
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.63 E-value=9.4e-07 Score=91.66 Aligned_cols=97 Identities=7% Similarity=-0.069 Sum_probs=67.3
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEeCCCC-----EEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDR-SGTLLVTASIHGN-----NINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFsp-dG~lLaTaS~dGt-----~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
.+..|.+||+.+++..... .+...+..++|+| ||+.|+..+.++. .|.+||+. .+
T Consensus 166 ~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-------~~----------- 226 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED-------GS----------- 226 (396)
T ss_dssp CCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT-------SC-----------
T ss_pred CcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC-------CC-----------
Confidence 4668999999988755444 5677899999999 8998888776432 36777764 11
Q ss_pred eeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCC-----CeEEEEEcCC
Q 046828 437 HVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSR-----GTCHIFVLTP 480 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d-----gTvhIw~i~~ 480 (627)
.+..+..+.....+..++|||||++|+.++.+ ++|++|++..
T Consensus 227 --~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (396)
T 3c5m_A 227 --NVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET 273 (396)
T ss_dssp --CCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred --ceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence 12223221112248889999999998888665 5589998864
No 177
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.60 E-value=1.6e-05 Score=80.04 Aligned_cols=90 Identities=11% Similarity=0.154 Sum_probs=59.2
Q ss_pred CCCeEEEEECC-CCeE---EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 363 IAGMVVVKDIV-SRSV---ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 363 ~dG~V~IwD~~-s~~~---l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
.++.|.+||+. +++. ...+..+...+..|+|+++|+++++. ++. |.+|+.. |.
T Consensus 191 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~-v~~~~~~--------g~------------ 247 (296)
T 3e5z_A 191 GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDG-VHVLTPD--------GD------------ 247 (296)
T ss_dssp TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTE-EEEECTT--------SC------------
T ss_pred CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCe-EEEECCC--------CC------------
Confidence 34677788875 3433 23333455567789999999988877 454 7899853 21
Q ss_pred EEEEEeecCCcCcEEEEEE-ccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 439 HLYKLHRGMTSAVIQDICF-SHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaF-SpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+..+. ... . +.+++| +||++.|.+++.++ ||.+++.
T Consensus 248 ~~~~~~-~~~-~-~~~~~f~~~d~~~L~v~t~~~---l~~~~~~ 285 (296)
T 3e5z_A 248 ELGRVL-TPQ-T-TSNLCFGGPEGRTLYMTVSTE---FWSIETN 285 (296)
T ss_dssp EEEEEE-CSS-C-CCEEEEESTTSCEEEEEETTE---EEEEECS
T ss_pred EEEEEE-CCC-C-ceeEEEECCCCCEEEEEcCCe---EEEEEcc
Confidence 333332 222 2 789999 68999999999874 5555543
No 178
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.58 E-value=1.8e-06 Score=92.78 Aligned_cols=80 Identities=9% Similarity=0.104 Sum_probs=58.4
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
..+|.|.+||+.++.... +...|+|++|||+| ++.+..||+ |++|+.. .+. .....
T Consensus 143 ~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~-i~~~~~~-------~~~----------~~~k~ 198 (388)
T 1xip_A 143 NSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRS-FQSFAWR-------NGE----------MEKQF 198 (388)
T ss_dssp ETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSC-EEEEEEE-------TTE----------EEEEE
T ss_pred ECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCc-EEEEcCC-------Ccc----------ccccc
Confidence 368999999999876543 45689999999999 678899998 7999763 110 00022
Q ss_pred EE------ee--cCCcCcEEEEEEccCCCEEEE
Q 046828 442 KL------HR--GMTSAVIQDICFSHYSQWIAI 466 (627)
Q Consensus 442 ~l------~r--G~t~a~I~sIaFSpDg~~Las 466 (627)
++ .. ++ ...|.+|.|.++++||++
T Consensus 199 ~I~~Pp~~~~~~~~-~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 199 EFSLPSELEELPVE-EYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EECCCHHHHTSCTT-TSEEEEEEESSSSEEEEE
T ss_pred eecCCcccccccCC-CeeEEEEEEecCCeEEEE
Confidence 23 11 23 356999999999999987
No 179
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.58 E-value=1.8e-05 Score=90.55 Aligned_cols=96 Identities=11% Similarity=-0.003 Sum_probs=65.9
Q ss_pred CCeEEEEECCCCe--EEEEeccCCC--CeEEEEECCCCCEEEEEeCCCCE-EEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 364 AGMVVVKDIVSRS--VISQFRAHTS--PISALCFDRSGTLLVTASIHGNN-INIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 364 dG~V~IwD~~s~~--~l~~~~aH~~--~Is~laFspdG~lLaTaS~dGt~-I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
.+.|.+||+.++. ....+..|.. .|..++|++++.+++++..+|.. |.+|++. +|.
T Consensus 310 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~-------~g~------------ 370 (710)
T 2xdw_A 310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLA-------TGA------------ 370 (710)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT-------TCC------------
T ss_pred CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECC-------CCC------------
Confidence 4678889988764 2344555544 68889999999999999999863 4555653 231
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeC----CCeEEEEEcCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSS----RGTCHIFVLTP 480 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~----dgTvhIw~i~~ 480 (627)
.+.++. .. ...|..++|+||++.|+.... .+++.+|++..
T Consensus 371 ~~~~l~-~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 371 LLKIFP-LE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp EEEEEC-CC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred EEEecC-CC-CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 334442 22 456899999999987775422 46899999864
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.57 E-value=3.9e-06 Score=94.40 Aligned_cols=97 Identities=15% Similarity=0.069 Sum_probs=58.9
Q ss_pred eEEEEECCCCeEEEEeccCCCC--------eEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 366 MVVVKDIVSRSVISQFRAHTSP--------ISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~--------Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
.|.+||+.+++....+..|... +..++|+|+|+++++++. |+ ++||.+... .+
T Consensus 266 ~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~d~~-----~~------------ 326 (662)
T 3azo_A 266 NLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA-AVLGILDPE-----SG------------ 326 (662)
T ss_dssp EEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS-CEEEEEETT-----TT------------
T ss_pred EEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc-cEEEEEECC-----CC------------
Confidence 5666776666544333333222 567999999999999999 87 699965321 12
Q ss_pred eEEEEEeecCCcCcEEEE-EEccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 438 VHLYKLHRGMTSAVIQDI-CFSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sI-aFSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
.+.++ .++ ...+..+ +++.+.-+++.++.+....||.++..++.
T Consensus 327 -~~~~l-~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 327 -ELVDA-AGP-WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp -EEEEC-CSS-CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred -cEEEe-cCC-CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 34444 232 2346666 55444444555667777778877654444
No 181
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.57 E-value=6.3e-05 Score=76.41 Aligned_cols=99 Identities=7% Similarity=-0.015 Sum_probs=72.8
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.++.|.+||.. ++.+..+..+. ....+.+.++|.+|++++.+++ |..||.. +|. .+++
T Consensus 144 ~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~-v~~~d~~-------tG~------------~~w~ 201 (276)
T 3no2_A 144 ATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHC-FVQLNLE-------SNR------------IVRR 201 (276)
T ss_dssp TTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBTTSE-EEEECTT-------TCC------------EEEE
T ss_pred CCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCCCCe-EEEEeCc-------CCc------------EEEE
Confidence 57899999998 89998888754 4456788999999998887776 7888854 453 6777
Q ss_pred Eeec----CCcCcEEEEEEccCCCEEEEEeCC--------CeEEEEEcCCCCC
Q 046828 443 LHRG----MTSAVIQDICFSHYSQWIAIVSSR--------GTCHIFVLTPFGG 483 (627)
Q Consensus 443 l~rG----~t~a~I~sIaFSpDg~~Las~S~d--------gTvhIw~i~~~gg 483 (627)
+.+. .....+..++..+||..+++.+.- +..++|++++.+.
T Consensus 202 ~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~ 254 (276)
T 3no2_A 202 VNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGK 254 (276)
T ss_dssp EEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSB
T ss_pred ecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCC
Confidence 7532 122348899999999998887521 3558899887543
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.56 E-value=5.3e-05 Score=77.17 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=48.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCC----cCcEEEEEEccCC
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMT----SAVIQDICFSHYS 461 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t----~a~I~sIaFSpDg 461 (627)
..+..|+|+++|.++++...++. |.+||.. +. .+..+..... ...+.+++|++|+
T Consensus 233 ~~~~~i~~d~~G~l~v~~~~~~~-v~~~d~~--------g~------------~~~~~~~~~~~~g~~~~~~~~~~~~dg 291 (333)
T 2dg1_A 233 EGPDSCCIDSDDNLYVAMYGQGR-VLVFNKR--------GY------------PIGQILIPGRDEGHMLRSTHPQFIPGT 291 (333)
T ss_dssp SEEEEEEEBTTCCEEEEEETTTE-EEEECTT--------SC------------EEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred CCCCceEECCCCCEEEEEcCCCE-EEEECCC--------CC------------EEEEEEcCCCccccccCcceEEECCCC
Confidence 35788999999999988877776 7899853 21 2333321110 0147899999999
Q ss_pred CEEEEEeCCC----eEEEEEcC
Q 046828 462 QWIAIVSSRG----TCHIFVLT 479 (627)
Q Consensus 462 ~~Las~S~dg----TvhIw~i~ 479 (627)
+.|.+++.++ .-.||.++
T Consensus 292 ~~L~v~~~~g~~~~~~~l~~~~ 313 (333)
T 2dg1_A 292 NQLIICSNDIEMGGGSMLYTVN 313 (333)
T ss_dssp CEEEEEEECGGGTCCEEEEEEE
T ss_pred CEEEEEeCccCCCCCceEEEEe
Confidence 8888777764 24455443
No 183
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.54 E-value=0.0001 Score=82.88 Aligned_cols=57 Identities=23% Similarity=0.168 Sum_probs=47.6
Q ss_pred cEEEEEECC--CCceEEEEecCCeEEEEEec----C--cEEEEE--eCCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLR--SHNYVHVLRFRSTVYMVRCS----P--RIVAVG--LAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~--t~~~V~tL~f~s~V~sV~~s----~--~~LaV~--~~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.|.+||+. +++.+.++.-....+.|+++ + ++|.|+ ..++|.|||..|++.+.++..
T Consensus 218 g~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~ 284 (567)
T 1qks_A 218 GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST 284 (567)
T ss_dssp SEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEec
Confidence 569999996 99999999877777899999 3 677666 357899999999999888764
No 184
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.53 E-value=1.7e-05 Score=79.25 Aligned_cols=93 Identities=12% Similarity=0.194 Sum_probs=66.8
Q ss_pred CCCeEEEEECCCCeEEEEec--cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 363 IAGMVVVKDIVSRSVISQFR--AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~--aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
.++.|.+||.. ++.+..+. .+...+..|+|+|+|+++++.+.++. |++||.. |. .+
T Consensus 140 ~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~~~~--------g~------------~~ 197 (286)
T 1q7f_A 140 KVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC-VKVFNYE--------GQ------------YL 197 (286)
T ss_dssp TTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE-EEEEETT--------CC------------EE
T ss_pred CCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE-EEEEcCC--------CC------------EE
Confidence 35678888864 45555554 45567899999999998888777776 8999963 21 33
Q ss_pred EEEee-cCCcCcEEEEEEccCCCEEEEEeCCC-eEEEEEc
Q 046828 441 YKLHR-GMTSAVIQDICFSHYSQWIAIVSSRG-TCHIFVL 478 (627)
Q Consensus 441 ~~l~r-G~t~a~I~sIaFSpDg~~Las~S~dg-TvhIw~i 478 (627)
..+.. |. ...+..|+|++||+++++...++ +|++|+.
T Consensus 198 ~~~~~~g~-~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 198 RQIGGEGI-TNYPIGVGINSNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp EEESCTTT-SCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred EEEccCCc-cCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence 33321 21 13489999999999888888776 9999984
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.45 E-value=3.1e-05 Score=87.23 Aligned_cols=176 Identities=10% Similarity=0.033 Sum_probs=121.9
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe-CCeEEEEeCC--CCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL-AAQIYCFDAL--TLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~-~~~I~i~D~~--t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
++|.++|+.+++.+.++.....+..+.+++ ++|.|+. ++.|.+||+. +++.+.++....
T Consensus 177 ~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---------------- 240 (567)
T 1qks_A 177 GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---------------- 240 (567)
T ss_dssp TEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS----------------
T ss_pred CeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC----------------
Confidence 679999999999999999877788999997 6666665 5689999996 888776664311
Q ss_pred ceeeEcCceEEEcC----CCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeee
Q 046828 255 GPMAVGPRWLAYAS----NNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRY 330 (627)
Q Consensus 255 ~~iAl~~r~LAy~~----~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y 330 (627)
+|+.+|+.. +... -.+..
T Consensus 241 -----~P~~ia~s~~~~pDGk~----------------------------------------------------l~v~n- 262 (567)
T 1qks_A 241 -----EARSIETSKMEGWEDKY----------------------------------------------------AIAGA- 262 (567)
T ss_dssp -----EEEEEEECCSTTCTTTE----------------------------------------------------EEEEE-
T ss_pred -----CCceeEEccccCCCCCE----------------------------------------------------EEEEE-
Confidence 235666652 2110 00111
Q ss_pred eccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEecc----------CCC-CeEEEEECCCCCE
Q 046828 331 YQDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRA----------HTS-PISALCFDRSGTL 399 (627)
Q Consensus 331 ~~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~a----------H~~-~Is~laFspdG~l 399 (627)
..++.|.|+|..+.+++..+.. |.. .+..+.+++++..
T Consensus 263 -------------------------------~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~ 311 (567)
T 1qks_A 263 -------------------------------YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE 311 (567)
T ss_dssp -------------------------------EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE
T ss_pred -------------------------------ccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCE
Confidence 2457899999999998887763 223 5889999999776
Q ss_pred EEEEeC-CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEE
Q 046828 400 LVTASI-HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFV 477 (627)
Q Consensus 400 LaTaS~-dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~ 477 (627)
++..-. .|+ |.++|.... . ...+..+..| ....++.|+||+++|+++. .+++|.++|
T Consensus 312 ~vv~~~~~g~-v~~vd~~~~-------~----------~~~v~~i~~~---~~~~d~~~~pdgr~~~va~~~sn~V~ViD 370 (567)
T 1qks_A 312 FIVNVKETGK-ILLVDYTDL-------N----------NLKTTEISAE---RFLHDGGLDGSHRYFITAANARNKLVVID 370 (567)
T ss_dssp EEEEETTTTE-EEEEETTCS-------S----------EEEEEEEECC---SSEEEEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred EEEEecCCCe-EEEEecCCC-------c----------cceeeeeecc---ccccCceECCCCCEEEEEeCCCCeEEEEE
Confidence 555544 455 788887511 0 0123333222 2378999999999988766 578999999
Q ss_pred cCCC
Q 046828 478 LTPF 481 (627)
Q Consensus 478 i~~~ 481 (627)
+...
T Consensus 371 ~~t~ 374 (567)
T 1qks_A 371 TKEG 374 (567)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 9854
No 186
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.43 E-value=1.1e-05 Score=81.94 Aligned_cols=169 Identities=8% Similarity=0.021 Sum_probs=111.3
Q ss_pred CcEEEEEECCCCceEEEEecCC--eEEEEEecC--cEEEEEeCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCccccc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRS--TVYMVRCSP--RIVAVGLAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGY 254 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s--~V~sV~~s~--~~LaV~~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~ 254 (627)
++.|.+||.++|+.+.++..+. .+.++.+.+ ++|+ +.++.|++||. +++.++++...... ..
T Consensus 14 ~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~------------~~ 79 (276)
T 3no2_A 14 WNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGC------------EM 79 (276)
T ss_dssp CSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTC------------EE
T ss_pred CCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCc------------cc
Confidence 3789999999999999998764 688888876 6666 66778999999 89998888652110 01
Q ss_pred ceeeEc--CceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeec
Q 046828 255 GPMAVG--PRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQ 332 (627)
Q Consensus 255 ~~iAl~--~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~ 332 (627)
..+++. ++.|....
T Consensus 80 ~~~~~~~dG~~lv~~~---------------------------------------------------------------- 95 (276)
T 3no2_A 80 QTARILPDGNALVAWC---------------------------------------------------------------- 95 (276)
T ss_dssp EEEEECTTSCEEEEEE----------------------------------------------------------------
T ss_pred cccEECCCCCEEEEec----------------------------------------------------------------
Confidence 111110 11111100
Q ss_pred cccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEec------cCCCCeEEEEECCCCCEEEEEeCC
Q 046828 333 DFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFR------AHTSPISALCFDRSGTLLVTASIH 406 (627)
Q Consensus 333 ~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~------aH~~~Is~laFspdG~lLaTaS~d 406 (627)
..++.|..+|. +++.+..+. .+..+...+++.++|.+|++.+.+
T Consensus 96 -----------------------------~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~ 145 (276)
T 3no2_A 96 -----------------------------GHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFAT 145 (276)
T ss_dssp -----------------------------STTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTT
T ss_pred -----------------------------CCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCC
Confidence 01233444443 334444433 122245566899999999999999
Q ss_pred CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 407 GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 407 Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
++ |.+||.. | ..++++.++ ..+.++.+.++++.|++++.+++|..|+..
T Consensus 146 ~~-v~~~d~~--------G------------~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 146 SE-VREIAPN--------G------------QLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp TE-EEEECTT--------S------------CEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred CE-EEEECCC--------C------------CEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence 87 7899963 3 267777554 236778899999999999888887777654
No 187
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.41 E-value=3.8e-05 Score=80.82 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=46.2
Q ss_pred CcEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe-----------CCeEEEEeCCCCceeEEEEc
Q 046828 179 PTAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL-----------AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~-----------~~~I~i~D~~t~e~~~tl~~ 236 (627)
+++|.+||..+++.+.++.-...- .|++++ ++|.++. ++.|.+||+.+++.+.++..
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~ 99 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISL 99 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEE
T ss_pred cCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEc
Confidence 468999999999999998855433 899997 6777764 34699999999999888864
No 188
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.39 E-value=0.00065 Score=72.09 Aligned_cols=98 Identities=11% Similarity=0.109 Sum_probs=64.0
Q ss_pred CCCeEEEEECCCC--eEEEEeccC----------CCCeEEEEECCCCCEEEEEeCC---------CCEEEEEeCCCCCCC
Q 046828 363 IAGMVVVKDIVSR--SVISQFRAH----------TSPISALCFDRSGTLLVTASIH---------GNNINIFRIMPSSSK 421 (627)
Q Consensus 363 ~dG~V~IwD~~s~--~~l~~~~aH----------~~~Is~laFspdG~lLaTaS~d---------Gt~I~Vwdi~p~~~~ 421 (627)
..+.|.+.|+.+. +.+..+.-. ......++|+|||+.|..+..+ +..|.|+|+.
T Consensus 232 ~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~----- 306 (373)
T 2mad_H 232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL----- 306 (373)
T ss_pred CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECC-----
Confidence 4678999998765 223333211 1224558899999988877542 1237888875
Q ss_pred CCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCC-EEEEEe-CCCeEEEEEcCCCC
Q 046828 422 GRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQ-WIAIVS-SRGTCHIFVLTPFG 482 (627)
Q Consensus 422 ~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~-~Las~S-~dgTvhIw~i~~~g 482 (627)
++ ..+.++.-|. ....|+|+|||+ .|.++. .+++|.|||+....
T Consensus 307 --t~------------~vv~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 307 --VG------------QTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred --CC------------EEEEEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 22 1334443332 368999999999 666666 48999999987654
No 189
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.37 E-value=0.00027 Score=70.80 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=64.2
Q ss_pred CCeEEEEECC-CCe-----EEEEeccCC-CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 364 AGMVVVKDIV-SRS-----VISQFRAHT-SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 364 dG~V~IwD~~-s~~-----~l~~~~aH~-~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
++.|.+||+. +++ ....+..+. ..+..|+|+++|.++++...++. |.+||.. +|..
T Consensus 197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~-i~~~d~~-------~g~~--------- 259 (314)
T 1pjx_A 197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH-IEVFGPD-------GGQP--------- 259 (314)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE-EEEECTT-------CBSC---------
T ss_pred CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE-EEEEcCC-------CCcE---------
Confidence 4667777765 333 334455454 56788999999999998877775 7889863 1210
Q ss_pred eeEEEEEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCC
Q 046828 437 HVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPF 481 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~ 481 (627)
...+.+ . ...+.+++|++|+++|.+++ .++.|..|++...
T Consensus 260 -~~~~~~---~-~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 260 -KMRIRC---P-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp -SEEEEC---S-SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred -eEEEeC---C-CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 122221 1 13589999999999666554 5689999998753
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.36 E-value=5.7e-05 Score=86.39 Aligned_cols=99 Identities=5% Similarity=-0.073 Sum_probs=64.9
Q ss_pred CCeEEEEECCC------Ce-EEEEeccCCCCeEEEEECCCCCEEEEEeCCCC---EEEEEeCCCCCCCCCCCCCccccCC
Q 046828 364 AGMVVVKDIVS------RS-VISQFRAHTSPISALCFDRSGTLLVTASIHGN---NINIFRIMPSSSKGRSGSASQTYDW 433 (627)
Q Consensus 364 dG~V~IwD~~s------~~-~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt---~I~Vwdi~p~~~~~~~g~~~~~~~~ 433 (627)
+..|.+||+.+ +. .+..+..|...+.. .|+|+|..|+..+.++. .|.+||+. ++..
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~-------~~~~------ 323 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFT-------DPEE------ 323 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETT-------SCCG------
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCC-------CCCc------
Confidence 45788898876 42 35566667666655 48999998887776432 36778874 1110
Q ss_pred CCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 434 TSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 434 ~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.....+........|.+++|+++++.+++...+++.+||.++.
T Consensus 324 ----~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 324 ----SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL 366 (710)
T ss_dssp ----GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred ----ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence 0112232222223588999998888899999999887776664
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.29 E-value=0.00011 Score=72.20 Aligned_cols=95 Identities=9% Similarity=0.002 Sum_probs=67.6
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
++.|.+||............+...+..|+++++|.++++...++. |.+|+.. +. ......
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~--------~~-----------~~~~~~ 229 (270)
T 1rwi_B 170 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAG--------ST-----------TSTVLP 229 (270)
T ss_dssp GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSC-EEEECTT--------CS-----------CCEECC
T ss_pred CCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCc-EEEEcCC--------CC-----------cceeec
Confidence 457888888776554433444467899999999988888777776 7889864 11 011111
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
..+. ..+.+|+|++||+.+++...+++|++|++..
T Consensus 230 ~~~~--~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 230 FTGL--NTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp CCSC--SCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred cCCC--CCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 1121 3489999999999888888999999999865
No 192
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.28 E-value=0.00063 Score=72.94 Aligned_cols=57 Identities=11% Similarity=0.001 Sum_probs=45.7
Q ss_pred cEEEEEECCCCceEEEEecCC--------eEEEEEecC--cEEEEEe---CCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS--------TVYMVRCSP--RIVAVGL---AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s--------~V~sV~~s~--~~LaV~~---~~~I~i~D~~t~e~~~tl~~ 236 (627)
++|.+||..|++.+.++.... .-..+.+++ ++|.|+. ++.|.++|+.+++.+.++..
T Consensus 109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v 178 (386)
T 3sjl_D 109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV 178 (386)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC
Confidence 679999999999999997542 356688887 6666663 46899999999999888843
No 193
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.26 E-value=0.00029 Score=71.58 Aligned_cols=100 Identities=12% Similarity=0.124 Sum_probs=59.8
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-eCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTA-SIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTa-S~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.+.|..+|..+++... +..+...+..++|+|||+.|..+ +.++. |.+||+... |.... .....+..
T Consensus 161 ~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-i~~~d~~~~------g~~~~-----~~~~~~~~ 227 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANR-LHRIALEDD------GVTIQ-----PFGATIPY 227 (333)
T ss_dssp CEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTT------SSSEE-----EEEEEEEE
T ss_pred CceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCe-EEEEEecCC------CcCcc-----cccceEEE
Confidence 3456666666544332 22333457899999999866554 44555 899997411 11000 00000110
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
-..+. ..+..|+|++||+.+++...++.|.+|+.
T Consensus 228 ~~~~~--~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 228 YFTGH--EGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp ECCSS--SEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred ecCCC--CCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 01121 25889999999998888888899999986
No 194
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.26 E-value=9.4e-06 Score=87.24 Aligned_cols=90 Identities=11% Similarity=0.102 Sum_probs=71.1
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.+|.|++||+.+......+..|..+|..+.+.+.. +|.++.+|+ +.+||+. .+. . ..
T Consensus 104 ~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~-L~v~dl~-------~~~------------~-~~ 160 (388)
T 1xip_A 104 TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVND-LSALDLR-------TKS------------T-KQ 160 (388)
T ss_dssp ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSE-EEEEETT-------TCC------------E-EE
T ss_pred cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCC-EEEEEcc-------CCc------------c-cc
Confidence 45789999998887777788888899998887763 888999998 7999996 221 2 12
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
+. ..|.+++|||+| ++++..||++++|+.+...
T Consensus 161 ~~-----~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~ 193 (388)
T 1xip_A 161 LA-----QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGE 193 (388)
T ss_dssp EE-----ESEEEEEECSSE--EEEEETTSCEEEEEEETTE
T ss_pred cc-----CCceEEEEcCCc--eEEEEcCCcEEEEcCCCcc
Confidence 21 249999999999 7889999999999765433
No 195
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.25 E-value=3.3e-05 Score=79.64 Aligned_cols=97 Identities=11% Similarity=0.078 Sum_probs=62.9
Q ss_pred CCCeEEEEECCCCeEEEEeccC----------CCCeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCcccc
Q 046828 363 IAGMVVVKDIVSRSVISQFRAH----------TSPISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTY 431 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH----------~~~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~ 431 (627)
.++.|++|| .+++.+..+... -.....|+|+|+ |.++++...+++ |++||.. +|.
T Consensus 164 ~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-I~~~~~~-------~G~----- 229 (329)
T 3fvz_A 164 CNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-IQCFKTD-------TKE----- 229 (329)
T ss_dssp SCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-EEEEETT-------TCC-----
T ss_pred CCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-EEEEECC-------CCc-----
Confidence 356788888 456666666432 234789999999 777777777765 8999974 242
Q ss_pred CCCCceeEEEEEeecCCcCcEEEEEEcc------CCCEEEEEeCCCeEEEEEcCC
Q 046828 432 DWTSSHVHLYKLHRGMTSAVIQDICFSH------YSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 432 ~~~~~~~~l~~l~rG~t~a~I~sIaFSp------Dg~~Las~S~dgTvhIw~i~~ 480 (627)
.+..+........+..++|+| +++..++.+.+.+|++|++..
T Consensus 230 -------~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~ 277 (329)
T 3fvz_A 230 -------FVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS 277 (329)
T ss_dssp -------EEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTT
T ss_pred -------EEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCC
Confidence 344443222233588999999 443333334455899999764
No 196
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.23 E-value=0.00087 Score=73.12 Aligned_cols=58 Identities=10% Similarity=0.077 Sum_probs=45.0
Q ss_pred CcEEEEEECCCCceEEEEecC-C---eEEEEEecC--cEEEEEe--------------------CCeEEEEeCCCCceeE
Q 046828 179 PTAVRFYSLRSHNYVHVLRFR-S---TVYMVRCSP--RIVAVGL--------------------AAQIYCFDALTLESKF 232 (627)
Q Consensus 179 ~~tV~lwdl~t~~~V~tL~f~-s---~V~sV~~s~--~~LaV~~--------------------~~~I~i~D~~t~e~~~ 232 (627)
++.|.++|.+|.+.+.+++-. . --|++.+++ ++++++. .++|++||+.+++.+.
T Consensus 163 ~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~ 242 (462)
T 2ece_A 163 PGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH 242 (462)
T ss_dssp CCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred CCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence 478999999999999999733 2 246677776 6677764 5789999999988777
Q ss_pred EEEc
Q 046828 233 SVLT 236 (627)
Q Consensus 233 tl~~ 236 (627)
++..
T Consensus 243 tI~v 246 (462)
T 2ece_A 243 SLTL 246 (462)
T ss_dssp EEES
T ss_pred EEec
Confidence 7643
No 197
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.21 E-value=0.00012 Score=83.68 Aligned_cols=97 Identities=9% Similarity=-0.052 Sum_probs=58.4
Q ss_pred eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC---CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI---HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~---dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.|.+||..+++ +..+..|...+....+ ++|.+++.... +++ |.+||+. ++.. . ....
T Consensus 253 ~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~-l~~~d~~-------~~~~--------~--~~~~ 312 (695)
T 2bkl_A 253 DVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQR-VFEVDPA-------KPAR--------A--SWKE 312 (695)
T ss_dssp EEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCE-EEEEBTT-------BCSG--------G--GCEE
T ss_pred EEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCE-EEEEeCC-------CCCc--------c--CCeE
Confidence 46666665543 3344555555666666 66765454442 344 6788874 1210 0 0122
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
+........|.+++|+ +++.+++...+++.+||.++..++
T Consensus 313 l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 352 (695)
T 2bkl_A 313 IVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK 352 (695)
T ss_dssp EECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 3222223458999998 788999999999999998875444
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.14 E-value=0.00029 Score=81.02 Aligned_cols=96 Identities=6% Similarity=-0.039 Sum_probs=64.5
Q ss_pred CCeEEEEECCCC--eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 364 AGMVVVKDIVSR--SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 364 dG~V~IwD~~s~--~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
.+.|.+||+.++ +....+..+...+..++|+ ++.++++...+|. .+||.+... |. .+.
T Consensus 340 ~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~------g~------------~~~ 399 (741)
T 1yr2_A 340 LKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLAFDLD------GK------------PAG 399 (741)
T ss_dssp TCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEEEETT------SC------------EEE
T ss_pred CCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCC------CC------------cee
Confidence 567888998874 3444455555667788888 7788999999987 577765421 21 333
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeC----CCeEEEEEcCC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSS----RGTCHIFVLTP 480 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~----dgTvhIw~i~~ 480 (627)
++. ......|..++|+||++.|+.... .+++++|++..
T Consensus 400 ~l~-~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 400 AVS-LPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp ECB-CSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred ecc-CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 342 222345899999999987774432 47889998864
No 199
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.10 E-value=0.00023 Score=71.45 Aligned_cols=92 Identities=13% Similarity=0.053 Sum_probs=59.9
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCce-eEEEEE
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSH-VHLYKL 443 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~-~~l~~l 443 (627)
+.|..+|.. ++ +..+..+......++|+|||++|++.+.+++ |.+|++.. .|. . .....+
T Consensus 153 ~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~-i~~~~~~~------~g~----------~~~~~~~~ 213 (296)
T 3e5z_A 153 RWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNA-THRYCLNA------RGE----------TEYQGVHF 213 (296)
T ss_dssp CEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTE-EEEEEECS------SSC----------EEEEEEEE
T ss_pred cEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCe-EEEEEECC------CCc----------CcCCCeEe
Confidence 456666665 33 3445566667899999999999966666665 89999851 121 0 011122
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
.. ....+..|+|++||++.++. ++.|.+|+.+
T Consensus 214 -~~-~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 214 -TV-EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp -CC-SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred -eC-CCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 21 22346789999999966665 8899999864
No 200
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.05 E-value=0.00017 Score=82.22 Aligned_cols=97 Identities=6% Similarity=-0.089 Sum_probs=66.2
Q ss_pred CCCeEEEEECCCCeE---EEEeccC-CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 363 IAGMVVVKDIVSRSV---ISQFRAH-TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~---l~~~~aH-~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
.++.|.+||+.+++. ...+..+ ...|..++|+ ++.++++...+|+ .+||.+... |.
T Consensus 293 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~------g~------------ 352 (695)
T 2bkl_A 293 PRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT-SEVRVATLK------GK------------ 352 (695)
T ss_dssp TTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE-EEEEEEETT------CC------------
T ss_pred CCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCC------CC------------
Confidence 457899999987653 3333333 4568889998 8889999999997 688876421 21
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeC----CCeEEEEEcCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSS----RGTCHIFVLTP 480 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~----dgTvhIw~i~~ 480 (627)
.+.++ .......|..++|+||++.|+.... .++|++|++..
T Consensus 353 ~~~~l-~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 353 PVRTV-QLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp EEEEC-CCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred eeEEe-cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 33333 2222345888999999988874433 47899999864
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.05 E-value=0.00077 Score=77.54 Aligned_cols=99 Identities=10% Similarity=0.087 Sum_probs=64.0
Q ss_pred CCeEEEEECCCC--eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCC---EEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 364 AGMVVVKDIVSR--SVISQFRAHTSPISALCFDRSGTLLVTASIHGN---NINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 364 dG~V~IwD~~s~--~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt---~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
...|.+||+.++ +....+..+...+.... +|+|..|+..+.++. .|.+||+. .+. .
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~-------~~~-----------~ 353 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLS-------GST-----------P 353 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECS-------SSS-----------C
T ss_pred cceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCC-------CCc-----------c
Confidence 457889998876 31455555655555553 499999988876432 26777764 110 0
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg 483 (627)
...++..+.. ..|.+++|+ +++.+++...+++.+||.++..++
T Consensus 354 ~~~~l~~~~~-~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 396 (741)
T 1yr2_A 354 RFDTVVPESK-DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGK 396 (741)
T ss_dssp EEEEEECCCS-SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSC
T ss_pred ccEEEecCCC-CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 2233333332 357888998 667888899999999998875444
No 202
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.02 E-value=0.003 Score=63.78 Aligned_cols=85 Identities=15% Similarity=0.224 Sum_probs=55.9
Q ss_pred CCeEEEEEC--CCCe-----EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 364 AGMVVVKDI--VSRS-----VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 364 dG~V~IwD~--~s~~-----~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
.+.|.+||+ .+++ .+..+..+......|+++++|.+.++....+. |.+||.. +|.
T Consensus 170 ~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~-v~~~d~~-------tG~---------- 231 (297)
T 3g4e_A 170 SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR-VIRLDPV-------TGK---------- 231 (297)
T ss_dssp GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE-EEEECTT-------TCC----------
T ss_pred CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE-EEEEcCC-------Cce----------
Confidence 345666665 3332 23344444456789999999998888777665 7888853 342
Q ss_pred eeEEEEEeecCCcCcEEEEEEc-cCCCEEEEEeCC
Q 046828 437 HVHLYKLHRGMTSAVIQDICFS-HYSQWIAIVSSR 470 (627)
Q Consensus 437 ~~~l~~l~rG~t~a~I~sIaFS-pDg~~Las~S~d 470 (627)
.+..+.-. ...+.+++|+ ||++.|.+++.+
T Consensus 232 --~~~~i~~p--~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 232 --RLQTVKLP--VDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp --EEEEEECS--SSBEEEEEEESGGGCEEEEEEBC
T ss_pred --EEEEEECC--CCCceEEEEeCCCCCEEEEEcCC
Confidence 34444322 2358999999 999998887764
No 203
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.00 E-value=0.0063 Score=62.49 Aligned_cols=85 Identities=11% Similarity=0.124 Sum_probs=53.3
Q ss_pred CCeEEEEECC--CC------eEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 364 AGMVVVKDIV--SR------SVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 364 dG~V~IwD~~--s~------~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
.+.|.+||+. ++ +.+..+..+...+..++++++|.+.++....+. |.+||.. |.
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~-v~~~d~~--------g~--------- 261 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYDTD--------GN--------- 261 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEECTT--------CC---------
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCE-EEEECCC--------CC---------
Confidence 3456666653 33 223334334445678999999998887766665 7888752 21
Q ss_pred ceeEEEEEeecCCcCcEEEEEEc-cCCCEEEEEeCCC
Q 046828 436 SHVHLYKLHRGMTSAVIQDICFS-HYSQWIAIVSSRG 471 (627)
Q Consensus 436 ~~~~l~~l~rG~t~a~I~sIaFS-pDg~~Las~S~dg 471 (627)
.+..+.- ....+.+++|+ +|++.|.+++.++
T Consensus 262 ---~~~~i~~--~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 262 ---HIARYEV--PGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp ---EEEEEEC--SCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred ---EEEEEEC--CCCCcEEEEEecCCCCEEEEEecCC
Confidence 3333321 12359999999 9998887776554
No 204
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.00 E-value=0.004 Score=66.72 Aligned_cols=71 Identities=13% Similarity=0.227 Sum_probs=49.0
Q ss_pred CeEEEEECCCCCEEEEEe-CCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecC--------------CcCc
Q 046828 387 PISALCFDRSGTLLVTAS-IHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGM--------------TSAV 451 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS-~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~--------------t~a~ 451 (627)
....|+|+|+|.++++-+ .+ +.|++|++. +| .+..+ .|. .-..
T Consensus 324 ~P~gia~d~dG~lyvad~~~~-~~I~~~~~~-------~G-------------~v~~~-~g~~~~~g~~~g~~~~~~~~~ 381 (409)
T 3hrp_A 324 QPNGMTVDEDGNFYIVDGFKG-YCLRKLDIL-------DG-------------YVSTV-AGQVDVASQIDGTPLEATFNY 381 (409)
T ss_dssp SEEEEEECTTCCEEEEETTTT-CEEEEEETT-------TT-------------EEEEE-EECTTCBSCCCBSTTTCCBSS
T ss_pred CCeEEEEeCCCCEEEEeCCCC-CEEEEEECC-------CC-------------EEEEE-eCCCCCCCcCCCChhceEeCC
Confidence 468899999999666655 44 458999963 23 12222 111 0123
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 452 IQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 452 I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
...|++++|+..+++-...++|+.+.++
T Consensus 382 P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 382 PYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred ceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 8999999999888888888899888763
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.00 E-value=0.0018 Score=65.55 Aligned_cols=51 Identities=6% Similarity=-0.009 Sum_probs=40.7
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC-cEEEEEeCCeEEEEeCCCCcee
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP-RIVAVGLAAQIYCFDALTLESK 231 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~-~~LaV~~~~~I~i~D~~t~e~~ 231 (627)
.+|..||..+++. ..+.+...+..+.+.+ ..|.++....|++||..+++..
T Consensus 35 ~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 35 KKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSAV 86 (297)
T ss_dssp TEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEEE
T ss_pred CEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcEE
Confidence 6799999998875 5677788899999986 2366667889999999987643
No 206
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.93 E-value=0.0037 Score=63.54 Aligned_cols=175 Identities=13% Similarity=0.103 Sum_probs=112.5
Q ss_pred cEEEEEECCCCceEEEEecCC--eEEEEEecCcEEEEEe--CCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccccc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS--TVYMVRCSPRIVAVGL--AAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIGYG 255 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s--~V~sV~~s~~~LaV~~--~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~~~ 255 (627)
.+|+++|++|++.++++.... -...+.+..+.|.++. +++|.+||+.|++.+.++..- .++ |
T Consensus 44 s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~-------g------ 109 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD-------G------ 109 (266)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS-------C------
T ss_pred CEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC-------e------
Confidence 679999999999999998654 2335666676666664 568999999999988877432 110 0
Q ss_pred eeeEcCceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeeecccc
Q 046828 256 PMAVGPRWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYYQDFI 335 (627)
Q Consensus 256 ~iAl~~r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~~~~~ 335 (627)
+. |++-+. + + | +
T Consensus 110 -~g-----lt~Dg~--------~-------------------------------------l-------~--v-------- 121 (266)
T 2iwa_A 110 -WG-----LATDGK--------I-------------------------------------L-------Y--G-------- 121 (266)
T ss_dssp -CE-----EEECSS--------S-------------------------------------E-------E--E--------
T ss_pred -EE-----EEECCC--------E-------------------------------------E-------E--E--------
Confidence 11 111110 0 0 0 0
Q ss_pred CCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccC--CC---CeEEEEECCCCCEEEEEeCCCCEE
Q 046828 336 PDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAH--TS---PISALCFDRSGTLLVTASIHGNNI 410 (627)
Q Consensus 336 p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH--~~---~Is~laFspdG~lLaTaS~dGt~I 410 (627)
+..++.|.++|..+.+.+..+.-- .. .+..|.|. +|++.+..-.+++ |
T Consensus 122 -------------------------s~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~-V 174 (266)
T 2iwa_A 122 -------------------------SDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC-I 174 (266)
T ss_dssp -------------------------ECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE-E
T ss_pred -------------------------ECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe-E
Confidence 113578999999999888887732 22 36788888 8876666545554 7
Q ss_pred EEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecC----------CcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcC
Q 046828 411 NIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGM----------TSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLT 479 (627)
Q Consensus 411 ~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~----------t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~ 479 (627)
.+.|.. +|. ....+.+. |. .....+.|+|+||++.|.++. ..+++.+.++.
T Consensus 175 ~vID~~-------tg~----------V~~~I~~~-g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 175 ARISAK-------DGT----------LLGWILLP-NLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp EEEETT-------TCC----------EEEEEECH-HHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred EEEECC-------CCc----------EEEEEECC-CcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 888875 332 12233331 21 113479999999998766655 57788888887
Q ss_pred CC
Q 046828 480 PF 481 (627)
Q Consensus 480 ~~ 481 (627)
+.
T Consensus 237 ~~ 238 (266)
T 2iwa_A 237 LV 238 (266)
T ss_dssp EC
T ss_pred cc
Confidence 64
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.83 E-value=0.00076 Score=73.25 Aligned_cols=56 Identities=9% Similarity=-0.074 Sum_probs=45.2
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe-----------CCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL-----------AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~-----------~~~I~i~D~~t~e~~~tl~~ 236 (627)
++|.++|+.+++.+.++.....- .|.+++ +.|.|+. ++.|.++|+.+++.+.++..
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v 167 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL 167 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC
Confidence 68999999999999999854422 899997 5665553 45799999999999888753
No 208
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.82 E-value=0.0011 Score=70.43 Aligned_cols=54 Identities=7% Similarity=-0.096 Sum_probs=45.1
Q ss_pred EEEEEECCCCceEEEEecC-CeEEEEEecC--cEEEEEe-----------CCeEEEEeCCCCceeEEEEc
Q 046828 181 AVRFYSLRSHNYVHVLRFR-STVYMVRCSP--RIVAVGL-----------AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 181 tV~lwdl~t~~~V~tL~f~-s~V~sV~~s~--~~LaV~~-----------~~~I~i~D~~t~e~~~tl~~ 236 (627)
+|.++|+.+++.+.++... .+ .+.+++ +.|.|+. ++.|.+||+.|++.+.++..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v 114 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL 114 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence 7999999999999999843 35 799987 6676664 45799999999999999864
No 209
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.80 E-value=0.032 Score=54.68 Aligned_cols=92 Identities=10% Similarity=-0.013 Sum_probs=61.8
Q ss_pred CCeEEEEECCCCeEEEE-eccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 364 AGMVVVKDIVSRSVISQ-FRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~-~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.+.|.+||. +++.... +..+...+..|+++++|++.++....+. |.+||.. +. ...+.
T Consensus 161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~~--------g~-----------~~~~~ 219 (299)
T 2z2n_A 161 NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK-IGRITTS--------GE-----------ITEFK 219 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECTT--------CC-----------EEEEE
T ss_pred CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce-EEEECCC--------Cc-----------EEEEE
Confidence 456777887 5544332 3344566889999999998887766665 7888852 21 12222
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
+.. ....+.+|++++||+..++...++.|.+|+.
T Consensus 220 ~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 220 IPT--PNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp CSS--TTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CCC--CCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 221 1235899999999997766667889999986
No 210
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.76 E-value=0.0037 Score=63.39 Aligned_cols=57 Identities=7% Similarity=0.018 Sum_probs=45.3
Q ss_pred cEEEEEECCCCceEEEEecCCeEEE--EEecCcEEEEEe--CCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYM--VRCSPRIVAVGL--AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~s--V~~s~~~LaV~~--~~~I~i~D~~t~e~~~tl~~ 236 (627)
..|+.+|++|++.+.++......+. |.+..+.|-+.. ++++++||+.|++.+.++..
T Consensus 65 S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~ 125 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNY 125 (262)
T ss_dssp EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEEC
Confidence 5799999999999999998776544 555565665554 67899999999999888753
No 211
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.75 E-value=1.1e-05 Score=85.36 Aligned_cols=91 Identities=9% Similarity=-0.032 Sum_probs=45.9
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
..+|.|..||..+++.+..+..+. ...++|++..|++++.+|+ |+.||.. +|. .++
T Consensus 99 ~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~-------tG~------------~~W 154 (369)
T 2hz6_A 99 KKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTK-------TRE------------LRW 154 (369)
T ss_dssp EEEEEEEEECCC--------------------------EEEEEEEEE-EECCCSS-------SSS------------CCC
T ss_pred eCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCE-EEEEECC-------CCC------------EEE
Confidence 357889999999999888887654 2457789999999999987 7899975 342 222
Q ss_pred EEeecCCcCcEEEEEEccCC---CEEEEEeCCCeEEEEEcCC
Q 046828 442 KLHRGMTSAVIQDICFSHYS---QWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg---~~Las~S~dgTvhIw~i~~ 480 (627)
++..+ .....+++.|. ..+++++.+|+++.|+...
T Consensus 155 ~~~~~----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 155 NATYF----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp EEEEE----EECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred eEecc----cccCccccCCccccceEEEECCCCEEEEEECCC
Confidence 22111 01223344442 5677788999999999864
No 212
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.72 E-value=0.00076 Score=66.05 Aligned_cols=94 Identities=11% Similarity=0.022 Sum_probs=61.6
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
++.|.+||..+.........+...+..|+|+|+|+++++...++. |.+||.. .+. .....
T Consensus 128 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~~~~-------~~~------------~~~~~ 187 (270)
T 1rwi_B 128 NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-VVKLEAE-------SNN------------QVVLP 187 (270)
T ss_dssp GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTE-EEEECTT-------TCC------------EEECC
T ss_pred CCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCE-EEEEecC-------CCc------------eEeec
Confidence 456667766554433322333346788999999998887766665 7899864 110 11111
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
..+. ..+.+|++++||+.+++...++.|.+|+..
T Consensus 188 ~~~~--~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 188 FTDI--TAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp CSSC--CSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred ccCC--CCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence 1121 348999999999887777778899999864
No 213
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.70 E-value=0.0076 Score=68.81 Aligned_cols=94 Identities=9% Similarity=0.027 Sum_probs=62.2
Q ss_pred CCeEEEEECCCCeE--EEEeccCCCCeEEEEECCCCCEEEEEeCC-CC-EEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 364 AGMVVVKDIVSRSV--ISQFRAHTSPISALCFDRSGTLLVTASIH-GN-NINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 364 dG~V~IwD~~s~~~--l~~~~aH~~~Is~laFspdG~lLaTaS~d-Gt-~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
.+.|.++|+.++.. ...+..|...+. .|+++|..|+....+ |. .|++|++. |. .
T Consensus 304 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--------g~------------~ 361 (693)
T 3iuj_A 304 NRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--------GK------------R 361 (693)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT--------SC------------E
T ss_pred CCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC--------CC------------e
Confidence 46788888887643 345666766654 899999988776654 42 36777764 21 2
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCC----CeEEEEEcCC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSR----GTCHIFVLTP 480 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~d----gTvhIw~i~~ 480 (627)
..++.-. ....|..+++++|++.|+....+ ++++.|++..
T Consensus 362 ~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 362 VREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp EEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred eEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence 3333221 12357888999999988876655 7888888754
No 214
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.63 E-value=0.0036 Score=63.65 Aligned_cols=56 Identities=9% Similarity=0.076 Sum_probs=44.2
Q ss_pred cEEEEEECCCCceEEEEecCCeEEE--EEecCcEEEEEe--CCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYM--VRCSPRIVAVGL--AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~s--V~~s~~~LaV~~--~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.|+.+|++|++.+.++ ++...+. |.+..+.|-+.. ++++++||+.|++.+.++..
T Consensus 75 g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 75 GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 45999999999999999 8776544 666665555544 67899999999999888753
No 215
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.63 E-value=0.0031 Score=72.21 Aligned_cols=47 Identities=2% Similarity=-0.154 Sum_probs=33.5
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCeeecc
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGETVLQ 488 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~~~~ 488 (627)
.++++..+. .+....++.++..+++++.||++++|+...-...-.+.
T Consensus 469 ~~W~~~~~~---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 469 AAWSVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp EEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEeecCCCC---CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 566654442 24556788899999999999999999998654443333
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.56 E-value=0.0068 Score=64.88 Aligned_cols=96 Identities=5% Similarity=-0.018 Sum_probs=57.6
Q ss_pred CCeEEEEECCCCeEEEE----eccCCC--CeEEEEECCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 364 AGMVVVKDIVSRSVISQ----FRAHTS--PISALCFDRS-GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~----~~aH~~--~Is~laFspd-G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
++.|..||..++..... ...+.. |.+.|+|+|+ |.++++-..++ .|++|+.. |.
T Consensus 239 ~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~-~I~~~~~~--------g~---------- 299 (409)
T 3hrp_A 239 NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS-SVYKITPD--------GE---------- 299 (409)
T ss_dssp TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT-EEEEECTT--------CC----------
T ss_pred CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC-EEEEEecC--------CC----------
Confidence 56788888877653222 222222 2249999995 66665555554 47888753 21
Q ss_pred eeEEEEEe---ecCC--------cCcEEEEEEccCCCEEEEEe-CCCeEEEEEcC
Q 046828 437 HVHLYKLH---RGMT--------SAVIQDICFSHYSQWIAIVS-SRGTCHIFVLT 479 (627)
Q Consensus 437 ~~~l~~l~---rG~t--------~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~ 479 (627)
.....-. .|.. -.....|+|++||+++++-+ ..++|++|++.
T Consensus 300 -~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~ 353 (409)
T 3hrp_A 300 -CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL 353 (409)
T ss_dssp -EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred -EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence 0111000 0100 12378999999999777777 78899999863
No 217
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.56 E-value=0.0039 Score=67.99 Aligned_cols=100 Identities=11% Similarity=0.145 Sum_probs=71.4
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCC--e-EEEEECCCCCEEEEEe------------------CCCCEEEEEeCCCCCC
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSP--I-SALCFDRSGTLLVTAS------------------IHGNNINIFRIMPSSS 420 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~--I-s~laFspdG~lLaTaS------------------~dGt~I~Vwdi~p~~~ 420 (627)
...|.|.++|.++.+.+.++..-..+ + ..+.|+|+++.++++. ..+..|.|||+.
T Consensus 161 ~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~---- 236 (462)
T 2ece_A 161 EGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR---- 236 (462)
T ss_dssp CSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT----
T ss_pred CCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC----
Confidence 45789999999999999999743222 2 3478899999999886 346679999986
Q ss_pred CCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEE--ccCCCEEEEEe------CCCeEEEEEcCC
Q 046828 421 KGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICF--SHYSQWIAIVS------SRGTCHIFVLTP 480 (627)
Q Consensus 421 ~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaF--SpDg~~Las~S------~dgTvhIw~i~~ 480 (627)
++ ..+.++.-|........|.| +||++++.+++ .+++|.+|..+.
T Consensus 237 ---~~------------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 237 ---KR------------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED 289 (462)
T ss_dssp ---TT------------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred ---CC------------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence 22 24445544422223456656 99999999888 567998887764
No 218
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.46 E-value=0.015 Score=61.38 Aligned_cols=55 Identities=9% Similarity=-0.065 Sum_probs=44.2
Q ss_pred EEEEEECCCCceEEEEecCCeEEEEEecC--cEEEEEe-----------CCeEEEEeCCCCceeEEEEc
Q 046828 181 AVRFYSLRSHNYVHVLRFRSTVYMVRCSP--RIVAVGL-----------AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 181 tV~lwdl~t~~~V~tL~f~s~V~sV~~s~--~~LaV~~-----------~~~I~i~D~~t~e~~~tl~~ 236 (627)
+|.+||+.+++.+.++.-...- .+.+++ +.|.|+. ++.|.+||+.+++.+.++..
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~ 115 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL 115 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEEC
Confidence 7999999999999988754433 899997 6777764 45799999999998877753
No 219
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=97.43 E-value=0.011 Score=58.84 Aligned_cols=99 Identities=9% Similarity=0.051 Sum_probs=60.3
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEEC----CCCCEEEEEe-CCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFD----RSGTLLVTAS-IHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFs----pdG~lLaTaS-~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
.+.|..||.. ++.. .+..+......++|+ |+|+.|..+. .++. |.+||+... |.. ...
T Consensus 152 ~~~l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~-i~~~~~~~~------g~~--------~~~ 214 (314)
T 1pjx_A 152 FGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKK-LWSYDIKGP------AKI--------ENK 214 (314)
T ss_dssp CEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTE-EEEEEEEET------TEE--------EEE
T ss_pred CCeEEEECCC-CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCe-EEEEECCCC------Ccc--------ccc
Confidence 3566677765 4433 233334456889999 9997665554 4554 899987411 110 000
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
..+....+.....+..|+|++||+++++...++.|.+|+.+
T Consensus 215 ~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 215 KVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence 11111122210347899999999988888889999999865
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.41 E-value=0.0034 Score=64.96 Aligned_cols=58 Identities=12% Similarity=0.044 Sum_probs=42.8
Q ss_pred cEEEEEECCCCceEEEEecCC-------eEEEEEecC--cEEEEE-----eCCeEEEEeCCCCceeEEEEcC
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS-------TVYMVRCSP--RIVAVG-----LAAQIYCFDALTLESKFSVLTY 237 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s-------~V~sV~~s~--~~LaV~-----~~~~I~i~D~~t~e~~~tl~~~ 237 (627)
.+|.+||+++++.++++.++. .+.+|++.+ ..+.++ ....|++||+.+++....+.+|
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~ 164 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGY 164 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTC
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCC
Confidence 579999999999999988752 357888874 355444 2457999999998866555443
No 221
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.40 E-value=0.01 Score=60.21 Aligned_cols=57 Identities=5% Similarity=-0.119 Sum_probs=47.1
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecCcEEEEEe-CCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGL-AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~~~LaV~~-~~~I~i~D~~t~e~~~tl~~ 236 (627)
+++.+||.+|.+.+.++.....=+.+....+.|.++. +++|+++|..|++.+.++.-
T Consensus 116 ~~v~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 116 GLLFTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CEEEEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 6799999999999999998765566666677776664 66899999999998888754
No 222
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.40 E-value=0.1 Score=53.82 Aligned_cols=91 Identities=12% Similarity=0.190 Sum_probs=58.0
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.+|.|..+|..+++.+..... .....+.. ++..|..++.+|. +..||.. +|. .+++
T Consensus 247 ~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~-l~~~d~~-------tG~------------~~w~ 302 (376)
T 3q7m_A 247 YNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDR-VMALTID-------GGV------------TLWT 302 (376)
T ss_dssp TTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCC-EEEEETT-------TCC------------EEEE
T ss_pred cCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCe-EEEEECC-------CCc------------EEEe
Confidence 567888999999887766553 33444444 3566777778887 6888975 442 4555
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.... ....+..... .+..|.+++.+|.+++|+...
T Consensus 303 ~~~~-~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 303 QSDL-LHRLLTSPVL--YNGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp ECTT-TTSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred eccc-CCCcccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence 4311 1111222222 356788999999999999764
No 223
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.39 E-value=0.036 Score=54.30 Aligned_cols=92 Identities=9% Similarity=-0.008 Sum_probs=61.3
Q ss_pred CCeEEEEECCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 364 AGMVVVKDIVSRSVIS-QFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~-~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
++.|.+||. +++... .+..+...+..|+++++|++.++...++. |.+||.. +. ...+.
T Consensus 119 ~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~~--------g~-----------~~~~~ 177 (299)
T 2z2n_A 119 GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNA-IGRITES--------GD-----------ITEFK 177 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE-EEEECTT--------CC-----------EEEEE
T ss_pred CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCE-EEEEcCC--------Cc-----------EEEee
Confidence 456777777 443322 22334567899999999999888766665 6778752 21 12222
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
+..+ ...+.+|++++|++..++...++.|.+|+.
T Consensus 178 ~~~~--~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 178 IPTP--ASGPVGITKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp CSST--TCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred CCCC--CCcceeEEECCCCCEEEEccCCceEEEECC
Confidence 2211 234899999999997777767888998886
No 224
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.39 E-value=0.00056 Score=73.35 Aligned_cols=98 Identities=10% Similarity=0.000 Sum_probs=72.2
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC----------CCCEEEEEeCCCCCCCCCCCCCccccCC
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI----------HGNNINIFRIMPSSSKGRSGSASQTYDW 433 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~----------dGt~I~Vwdi~p~~~~~~~g~~~~~~~~ 433 (627)
++.|.++|..+++.+..+..-..| . |+|+|||++|..++. ++ .|.+||.. ++.
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~-~VsviD~~-------t~~------- 120 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTD-YVEVFDPV-------TLL------- 120 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEE-EEEEECTT-------TCC-------
T ss_pred CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCC-EEEEEECC-------CCe-------
Confidence 579999999999999999876667 4 999999999988762 33 48999986 221
Q ss_pred CCceeEEEEEeecC-----CcCcEEEEEEccCCCEEEEEeC--CCeEEEEEcCCCCC
Q 046828 434 TSSHVHLYKLHRGM-----TSAVIQDICFSHYSQWIAIVSS--RGTCHIFVLTPFGG 483 (627)
Q Consensus 434 ~~~~~~l~~l~rG~-----t~a~I~sIaFSpDg~~Las~S~--dgTvhIw~i~~~gg 483 (627)
.+.++.-+. ....-..++|+|||++|.++.. +++|.|+|+....-
T Consensus 121 -----v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 121 -----PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp -----EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred -----EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE
Confidence 233332111 1112456899999999999874 68999999987643
No 225
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.37 E-value=0.05 Score=54.48 Aligned_cols=56 Identities=11% Similarity=0.081 Sum_probs=44.1
Q ss_pred cEEEEEECCCCceEEEEecCCeEEE--EEecCcEEEEEe--CCeEEEEeCCCCceeEEEE
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYM--VRCSPRIVAVGL--AAQIYCFDALTLESKFSVL 235 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~s--V~~s~~~LaV~~--~~~I~i~D~~t~e~~~tl~ 235 (627)
..|+.+|+++++.+.++..+...+. +.+..+.|-+.. ++++++||+.|++.+.++.
T Consensus 43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~ 102 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFR 102 (243)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEe
Confidence 5799999999999999998765543 455455555544 6789999999999988875
No 226
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.33 E-value=0.063 Score=54.91 Aligned_cols=97 Identities=12% Similarity=0.121 Sum_probs=57.6
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCC-CCccccCCCCceeEEEEE
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSG-SASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g-~~~~~~~~~~~~~~l~~l 443 (627)
+.|..+| +++. ..+..+......++|+|||+.|..+......|.+||+.+. +| .. . ....+..+
T Consensus 161 ~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~-----~Gl~~------~-~~~~~~~~ 225 (326)
T 2ghs_A 161 GSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR-----TGLPT------G-KAEVFIDS 225 (326)
T ss_dssp EEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTT-----TCCBS------S-CCEEEEEC
T ss_pred eEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccc-----cCCcc------c-CceEEEEC
Confidence 4555566 3443 2333333456789999999877666544344899997411 12 10 0 00112222
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
.+. ...+..+++.+||++.++....+.|.+|+.
T Consensus 226 -~~~-~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 226 -TGI-KGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp -TTS-SSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred -CCC-CCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 111 234788999999998777777788888875
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.22 E-value=0.013 Score=67.00 Aligned_cols=58 Identities=19% Similarity=0.119 Sum_probs=42.2
Q ss_pred cEEEEEECCCCceEEEEecCCe------------EEEEEecCcEEEEE-eCCeEEEEeCCCCceeEEEEcC
Q 046828 180 TAVRFYSLRSHNYVHVLRFRST------------VYMVRCSPRIVAVG-LAAQIYCFDALTLESKFSVLTY 237 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~------------V~sV~~s~~~LaV~-~~~~I~i~D~~t~e~~~tl~~~ 237 (627)
+.|.-+|.+||+.+-+++.... ...+.+...+|.++ .+++|+.+|+.|++.+.+....
T Consensus 87 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~ 157 (677)
T 1kb0_A 87 SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTF 157 (677)
T ss_dssp GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEETT
T ss_pred CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecCC
Confidence 5588899999999988875431 12234445555555 5779999999999999887653
No 228
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.20 E-value=0.19 Score=49.01 Aligned_cols=92 Identities=9% Similarity=0.029 Sum_probs=59.1
Q ss_pred CCeEEEEECCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 364 AGMVVVKDIVSRSVIS-QFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~-~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.+.|.++|. +++... .+..+...+..|+++++|.+.++....+. |.+|+.. +. ...+.
T Consensus 166 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~~--------g~-----------~~~~~ 224 (300)
T 2qc5_A 166 NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK-IGRITTT--------GE-----------ISEYD 224 (300)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECTT--------CC-----------EEEEE
T ss_pred CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE-EEEEcCC--------Cc-----------EEEEE
Confidence 456677776 443332 12234456899999999998877666555 7888752 21 12222
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
+..+ ...+.+|+++++|+..++...++.|.+|+.
T Consensus 225 ~~~~--~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 225 IPTP--NARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp CSST--TCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CCCC--CCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 2111 234899999999996666666788988876
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.19 E-value=0.042 Score=62.99 Aligned_cols=41 Identities=7% Similarity=-0.001 Sum_probs=29.5
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFG 482 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~g 482 (627)
.++++..+. .+..-.++..+..|++++.||+++.||.+.-.
T Consensus 467 ~~W~~~~~~---~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 467 AAWEVPYVT---IFNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp EEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred eEeEccCCC---CccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 455554432 13344777888999999999999999987643
No 230
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.18 E-value=0.044 Score=55.44 Aligned_cols=57 Identities=7% Similarity=0.104 Sum_probs=45.7
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecCcEEEEEe-CCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGL-AAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~~~LaV~~-~~~I~i~D~~t~e~~~tl~~ 236 (627)
+++.+||.+|.+.+.++.....=+.+....+.|.++. +++|+++|..|++.+.++.-
T Consensus 107 ~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred CEEEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 6799999999999999998664456666566666654 66899999999998888754
No 231
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.17 E-value=0.0083 Score=68.47 Aligned_cols=94 Identities=13% Similarity=0.123 Sum_probs=53.4
Q ss_pred CCeEEEEECCCCe-EEEEeccCCCCeEEEEECCCCCEEEE-EeCCC--CEEEEEeCCCCCCCCCCCCCccccCCCCceeE
Q 046828 364 AGMVVVKDIVSRS-VISQFRAHTSPISALCFDRSGTLLVT-ASIHG--NNINIFRIMPSSSKGRSGSASQTYDWTSSHVH 439 (627)
Q Consensus 364 dG~V~IwD~~s~~-~l~~~~aH~~~Is~laFspdG~lLaT-aS~dG--t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~ 439 (627)
...|.++|+.++. ....+..+....... |+++|..|+. ...++ ..|.++|+. .+. ...+.
T Consensus 258 ~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~-------~~~--------~~~~~ 321 (693)
T 3iuj_A 258 GNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAA-------NPG--------PAHWR 321 (693)
T ss_dssp CCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETT-------SCC--------GGGCE
T ss_pred CcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC-------CCC--------ccccE
Confidence 3578999987763 345566666666555 6666665554 44443 235666764 111 00012
Q ss_pred EEEEeecCCcCcEEEEEEccCCCEEEEEeCCC---eEEEEEcC
Q 046828 440 LYKLHRGMTSAVIQDICFSHYSQWIAIVSSRG---TCHIFVLT 479 (627)
Q Consensus 440 l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dg---TvhIw~i~ 479 (627)
.+.. +....+ .|++++++|+....++ .|++|+++
T Consensus 322 --~l~~-~~~~~~---~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 322 --DLIP-ERQQVL---TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp --EEEC-CCSSCE---EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred --EEec-CCCCEE---EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 2222 222223 8999999998877654 56666654
No 232
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.08 E-value=0.0012 Score=70.25 Aligned_cols=94 Identities=9% Similarity=-0.054 Sum_probs=69.3
Q ss_pred eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe---------CCCCEEEEEeCCCCCCCCCCCCCccccCCCCc
Q 046828 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTAS---------IHGNNINIFRIMPSSSKGRSGSASQTYDWTSS 436 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS---------~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~ 436 (627)
.|.|+|..+++.+.+|..-..| .++|+|||++|..+. +++..|.+||+. ++.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~-------T~~---------- 107 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV-------TFL---------- 107 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT-------TCC----------
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC-------CCC----------
Confidence 8999999999999999866677 799999999999987 223458999986 232
Q ss_pred eeEEEEEeec-CC----cCcEEEEEEccCCCEEEEEeC--CCeEEE--EEcCC
Q 046828 437 HVHLYKLHRG-MT----SAVIQDICFSHYSQWIAIVSS--RGTCHI--FVLTP 480 (627)
Q Consensus 437 ~~~l~~l~rG-~t----~a~I~sIaFSpDg~~Las~S~--dgTvhI--w~i~~ 480 (627)
.+.++.-| .. ......++|||||+||.++.. ..++.+ +|+..
T Consensus 108 --vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 108 --PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp --EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred --EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 34443222 00 012457899999999999975 467888 87754
No 233
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.07 E-value=0.032 Score=63.93 Aligned_cols=57 Identities=25% Similarity=0.139 Sum_probs=41.0
Q ss_pred cEEEEEECCCCceEEEEecCCeE------------EEEEecCcEEEEE-eCCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTV------------YMVRCSPRIVAVG-LAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V------------~sV~~s~~~LaV~-~~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.|.-+|.+||+.+-+++..... ..+.+...+|.++ .+++|+.+|+.|++.+.+...
T Consensus 80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 80 SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 45888999999999888654210 1223334555555 477999999999999888764
No 234
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.00 E-value=0.4 Score=49.26 Aligned_cols=57 Identities=11% Similarity=0.038 Sum_probs=41.7
Q ss_pred cEEEEEECCCCceEEEEecCCeEEE-EEecCcEEEEE-eCCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYM-VRCSPRIVAVG-LAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~s-V~~s~~~LaV~-~~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.|..+|.++|+.+...+....+.. ..+....|.++ .++.|+.||+.|++.++....
T Consensus 113 g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~ 171 (376)
T 3q7m_A 113 AQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNL 171 (376)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence 6799999999999988886654321 22334555555 466899999999998877654
No 235
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.94 E-value=0.17 Score=50.53 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=46.2
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEecCcEEEEE-eCCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVG-LAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~s~~~LaV~-~~~~I~i~D~~t~e~~~tl~~ 236 (627)
+++.+||.+|.+.+.++.....=+.+....+.|.++ .+++|+++|..|++.+.++.-
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CEEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence 679999999999999999876556666666666555 456899999999998888754
No 236
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=96.94 E-value=0.19 Score=49.12 Aligned_cols=92 Identities=10% Similarity=0.023 Sum_probs=59.0
Q ss_pred CCeEEEEECCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 364 AGMVVVKDIVSRSVIS-QFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~-~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
++.|..+|.. ++... .+......+..|+++++|++.++....+. |.+||.. +. ...+.
T Consensus 124 ~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~~--------g~-----------~~~~~ 182 (300)
T 2qc5_A 124 GDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNS-IGRITNT--------GK-----------LEEYP 182 (300)
T ss_dssp TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECTT--------CC-----------EEEEE
T ss_pred CCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCe-EEEECCC--------Cc-----------EEEee
Confidence 3456667666 43322 23334456899999999997777665555 6777752 21 12222
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
+. + ....+..|++.+|++..++....+.|.+|+.
T Consensus 183 ~~-~-~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 183 LP-T-NAAAPVGITSGNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp CS-S-TTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred CC-C-CCCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence 21 1 1234899999999987777777788888876
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.92 E-value=0.079 Score=52.95 Aligned_cols=92 Identities=13% Similarity=0.162 Sum_probs=54.0
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
++.|..+|. +++.+..+......+..+.++++|.+. .++.+|. +..||. . |. .++.+
T Consensus 234 ~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~gg-l~~~d~--~------g~------------~~~~~ 290 (330)
T 3hxj_A 234 DGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIY-FGSYDGH-LYAINP--D------GT------------EKWNF 290 (330)
T ss_dssp TTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEE-EECTTCE-EEEECT--T------SC------------EEEEE
T ss_pred CCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEE-EecCCCC-EEEECC--C------Cc------------EEEEE
Confidence 344555553 344445555444445567778888655 4566765 677773 2 21 34443
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.-+ ...+.++....|++ |.+++.+|.+++...+..
T Consensus 291 ~~~--~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 291 ETG--SWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp ECS--SCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred EcC--CccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 222 23477788888887 456889999999887643
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.91 E-value=0.084 Score=53.51 Aligned_cols=95 Identities=9% Similarity=0.029 Sum_probs=62.1
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.++.|.++|..+.+.+.+|..- .+. ...+++||+.|..+...++ |.++|.. +.. .+.+
T Consensus 84 ~~~~v~viD~~t~~v~~~i~~g-~~~-g~glt~Dg~~l~vs~gs~~-l~viD~~-------t~~------------v~~~ 141 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFTHQ-MKD-GWGLATDGKILYGSDGTSI-LYEIDPH-------TFK------------LIKK 141 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEECC-SSS-CCEEEECSSSEEEECSSSE-EEEECTT-------TCC------------EEEE
T ss_pred cCCEEEEEECCCCcEEEEEECC-CCC-eEEEEECCCEEEEECCCCe-EEEEECC-------CCc------------EEEE
Confidence 5788999999999999999743 121 2446678888887776554 7888864 111 2222
Q ss_pred Ee---ecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 443 LH---RGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 443 l~---rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
+. +|.....+..+.|. |++..+..-.+++|.+.|...
T Consensus 142 I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~t 181 (266)
T 2iwa_A 142 HNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKD 181 (266)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTT
T ss_pred EEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCC
Confidence 22 12222237788998 786655555678888888764
No 239
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=96.86 E-value=0.0032 Score=68.29 Aligned_cols=97 Identities=8% Similarity=-0.014 Sum_probs=71.7
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC----------CCCEEEEEeCCCCCCCCCCCCCccccCCC
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI----------HGNNINIFRIMPSSSKGRSGSASQTYDWT 434 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~----------dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~ 434 (627)
+.|.++|+.+++.+.++..-..| .|+|+|||++|..+.. ++ .|.|+|.. ++.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~-~VsviD~~-------t~~-------- 160 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTD-YVEVFDPV-------TFL-------- 160 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEE-EEEEECTT-------TCC--------
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCC-EEEEEECC-------CCc--------
Confidence 79999999999999999966677 8999999999988873 33 48999975 221
Q ss_pred CceeEEEEEeec-C----CcCcEEEEEEccCCCEEEEEeC--CCeEEEEEcCCCCC
Q 046828 435 SSHVHLYKLHRG-M----TSAVIQDICFSHYSQWIAIVSS--RGTCHIFVLTPFGG 483 (627)
Q Consensus 435 ~~~~~l~~l~rG-~----t~a~I~sIaFSpDg~~Las~S~--dgTvhIw~i~~~gg 483 (627)
.+.++.-+ . ....-..++|||||++|.++.. +++|.|+|+....-
T Consensus 161 ----vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv 212 (426)
T 3c75_H 161 ----PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF 212 (426)
T ss_dssp ----EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred ----EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE
Confidence 23333211 0 0012356899999999999874 58999999887543
No 240
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=96.83 E-value=0.00023 Score=75.14 Aligned_cols=88 Identities=10% Similarity=0.101 Sum_probs=41.4
Q ss_pred CCCCeEEEEECCCCeEEEEeccCC------CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHT------SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~------~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
..+|.|..||.++++.+..++.+. .|+ +. ++..|++++.+|+ |+.||.. +|.
T Consensus 56 s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~----~~-~~~~v~~g~~dg~-v~a~D~~-------tG~--------- 113 (369)
T 2hz6_A 56 PNDGSLYTLGSKNNEGLTKLPFTIPELVQASPC----RS-SDGILYMGKKQDI-WYVIDLL-------TGE--------- 113 (369)
T ss_dssp TTTCCEEEC-----CCSEECSCCHHHHHTTCSC----C------CCCCEEEEE-EEEECCC-------------------
T ss_pred CCCCEEEEEECCCCceeeeeeccCccccccCce----Ee-cCCEEEEEeCCCE-EEEEECC-------CCc---------
Confidence 357889999988887766555431 222 11 3446777888887 7999975 452
Q ss_pred ceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 436 SHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 436 ~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.++++..+. .+.++|++..|++++.+++++.|+...
T Consensus 114 ---~~w~~~~~~------~~~~~p~~~~v~~~~~dg~v~a~d~~t 149 (369)
T 2hz6_A 114 ---KQQTLSSAF------ADSLSPSTSLLYLGRTEYTITMYDTKT 149 (369)
T ss_dssp ----------------------------EEEEEEEEEEECCCSSS
T ss_pred ---EEEEecCCC------cccccccCCEEEEEecCCEEEEEECCC
Confidence 445443221 245678999999999999999998764
No 241
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.82 E-value=0.076 Score=60.56 Aligned_cols=57 Identities=21% Similarity=0.049 Sum_probs=40.8
Q ss_pred cEEEEEECCCCceEEEEecCCeE------------EEEEecCcEEEEE-eCCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTV------------YMVRCSPRIVAVG-LAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V------------~sV~~s~~~LaV~-~~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.|.-+|.+||+.+-+++..... ..+.+...+|.++ .+++|+.+|+.|++.+.+...
T Consensus 76 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 76 SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence 56888999999999888654211 1223334455555 477999999999999988764
No 242
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.59 E-value=0.3 Score=55.61 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=28.4
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
.+++...+. .+....+...+..|++++.||.+++|+...-
T Consensus 450 ~~W~~~~~~---~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 450 AAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp EEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred EEEEccCCC---CCcCceeEeCCCEEEEECCcccchhhhhhcC
Confidence 455554432 2344566678889999999999999998653
No 243
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=96.54 E-value=0.16 Score=50.97 Aligned_cols=93 Identities=11% Similarity=0.022 Sum_probs=54.8
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC-----CEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG-----NNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG-----t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
.+.|..+|..+++..... +......++|+|||+.|..+.... ..|.+|++.. +. ..
T Consensus 168 ~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~-------~~----------l~ 228 (305)
T 3dr2_A 168 HHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD-------GA----------LH 228 (305)
T ss_dssp CEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET-------TE----------EE
T ss_pred CCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC-------CC----------cc
Confidence 356777887666543332 334567899999999888877652 3488898751 10 00
Q ss_pred EEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 439 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 439 ~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
....+... .......|++.+||++. +++.+ .|++|+.
T Consensus 229 ~~~~~~~~-~~~~pdgi~~d~~G~lw-v~~~~-gv~~~~~ 265 (305)
T 3dr2_A 229 DRRHFASV-PDGLPDGFCVDRGGWLW-SSSGT-GVCVFDS 265 (305)
T ss_dssp EEEEEECC-SSSCCCSEEECTTSCEE-ECCSS-EEEEECT
T ss_pred CCeEEEEC-CCCCCCeEEECCCCCEE-EecCC-cEEEECC
Confidence 11111111 11235678999999944 44444 4777764
No 244
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.52 E-value=0.18 Score=56.44 Aligned_cols=27 Identities=4% Similarity=-0.145 Sum_probs=20.6
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 454 DICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 454 sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
...+...+..|.+++.||+++.|+...
T Consensus 468 ~~~~~t~gg~v~~g~~dg~l~a~D~~t 494 (571)
T 2ad6_A 468 GGTLYTKGGLVWYATLDGYLKALDNKD 494 (571)
T ss_dssp SBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred ceeEEECCCEEEEEcCCCeEEEEECCC
Confidence 334455667788899999999999865
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.51 E-value=0.1 Score=58.60 Aligned_cols=105 Identities=8% Similarity=-0.045 Sum_probs=67.7
Q ss_pred CeEEEEECCC--CeE-EEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 365 GMVVVKDIVS--RSV-ISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 365 G~V~IwD~~s--~~~-l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
+.|.|.|..+ ++. +..+..-. ...++.|+|||+++..++.....|.|+|+...... ..|. .........
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg~-~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~-~~~~------l~~~~~v~~ 325 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV-FYEN------ADPRSAVVA 325 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH-HHSC------CCGGGGEEE
T ss_pred CcEEEEeCcccCCceeEEEEecCC-CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc-cccc------cCcccceEE
Confidence 4599999998 555 66665433 34678999999999888876666899998621000 0000 000001233
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
++.-|. .-..++|++||....+.-.+++|-+|+++.
T Consensus 326 ~v~vG~---gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 326 EPELGL---GPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CCBCCS---CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EcCCCC---CcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 444443 368899999994444556799999999976
No 246
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.47 E-value=0.38 Score=50.67 Aligned_cols=101 Identities=14% Similarity=0.181 Sum_probs=63.8
Q ss_pred CCCeEEEEEC-------CCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCC
Q 046828 363 IAGMVVVKDI-------VSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTS 435 (627)
Q Consensus 363 ~dG~V~IwD~-------~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~ 435 (627)
.+|.+..|++ .+.+.+.+|.-- +.+..+..++....|..+-++ .-|..|+..|.... ++
T Consensus 151 k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~~--~~---------- 216 (355)
T 3amr_A 151 KEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGGS--NG---------- 216 (355)
T ss_dssp SSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETT-TEEEEEECSTTSCS--CC----------
T ss_pred CCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCCC--Cc----------
Confidence 4477777776 233567777753 467788899988888888887 33444443333210 11
Q ss_pred ceeEEEEEeecCCcCcEEEEEE--ccCCC-EEEEEe-CCCeEEEEEcC
Q 046828 436 SHVHLYKLHRGMTSAVIQDICF--SHYSQ-WIAIVS-SRGTCHIFVLT 479 (627)
Q Consensus 436 ~~~~l~~l~rG~t~a~I~sIaF--SpDg~-~Las~S-~dgTvhIw~i~ 479 (627)
..+...--|.-.+.+..|+. .+|++ ||++++ .+.+.+||+..
T Consensus 217 --~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 217 --TVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp --EEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred --eEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 12333222333456899988 66777 777777 67799999996
No 247
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=96.25 E-value=0.043 Score=56.53 Aligned_cols=107 Identities=11% Similarity=0.139 Sum_probs=62.1
Q ss_pred CCeEEEEECCCCeEEEEeccC------CCCeEEEEECCC-CCEEEEEe---CCCCEEEEEeCCCCCCCCCCCCCcc--cc
Q 046828 364 AGMVVVKDIVSRSVISQFRAH------TSPISALCFDRS-GTLLVTAS---IHGNNINIFRIMPSSSKGRSGSASQ--TY 431 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH------~~~Is~laFspd-G~lLaTaS---~dGt~I~Vwdi~p~~~~~~~g~~~~--~~ 431 (627)
++.|.+||+.+++.+..+..+ ...+..|+|+|+ |.++++-+ .++. |.+||+. . +.... ..
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~-i~v~d~~-~------g~~~r~~~~ 163 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA-LIRVDLQ-T------GLAARVLQG 163 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE-EEEEETT-T------CCEEEECTT
T ss_pred CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe-EEEEECC-C------CCEEEEecC
Confidence 568999999999877766532 235689999986 55556654 4554 7899975 1 21000 00
Q ss_pred ----CC-CCce----eEEEEEe-ecC---CcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 432 ----DW-TSSH----VHLYKLH-RGM---TSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 432 ----~~-~~~~----~~l~~l~-rG~---t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
.. .... ..++... .|. -...+..|+||||+++|.++...++ +||.++
T Consensus 164 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~ 223 (343)
T 2qe8_A 164 YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIK 223 (343)
T ss_dssp CTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEE
T ss_pred CCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEE
Confidence 00 0000 0000000 000 0013689999999999999888775 666664
No 248
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=95.32 E-value=0.59 Score=52.34 Aligned_cols=83 Identities=24% Similarity=0.392 Sum_probs=54.6
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
..|.|.-||+.+++.+-.++.+. ++..-.+.-.|.++..++.||. ++.||.. +|. .+++
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~-l~A~D~~-------tG~------------~lW~ 522 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGY-FKAFDAK-------SGK------------ELWK 522 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSE-EEEEETT-------TCC------------EEEE
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCc-EEEEECC-------CCC------------EEEE
Confidence 46899999999999887776442 2221112224667778999997 7999986 553 6777
Q ss_pred EeecCCcCcEE--EEEEccCCC-EEEEEeC
Q 046828 443 LHRGMTSAVIQ--DICFSHYSQ-WIAIVSS 469 (627)
Q Consensus 443 l~rG~t~a~I~--sIaFSpDg~-~Las~S~ 469 (627)
++-+. .|. -+.|..||+ |+++.+.
T Consensus 523 ~~~~~---g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 523 FQTGS---GIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp EECSS---CCCSCCEEEEETTEEEEEEEEC
T ss_pred ecCCC---CcccCceEEEECCEEEEEEEcc
Confidence 75432 233 267778887 5555544
No 249
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.12 E-value=8.4 Score=46.73 Aligned_cols=96 Identities=7% Similarity=0.087 Sum_probs=59.7
Q ss_pred CeEEEEECCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 365 GMVVVKDIVSRSVIS-QFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 365 G~V~IwD~~s~~~l~-~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
..|+|||+...+.+. .-..+. .|..+...-.|.+++.|+...- |.++...+.. ..+..+
T Consensus 904 ~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~~~I~vgD~~~S-v~~~~y~~~~------------------~~L~~~ 963 (1158)
T 3ei3_A 904 STVRLYEWTTEKELRTECNHYN-NIMALYLKTKGDFILVGDLMRS-VLLLAYKPME------------------GNFEEI 963 (1158)
T ss_dssp TEEEEEEECTTSCEEEEEEECC-CSCEEEEEEETTEEEEEESSBC-EEEEEEETTT------------------TEEEEE
T ss_pred CEEEEEECCCCceEEEEeeccc-cEEEEEEeccCCEEEEEEhhhe-EEEEEEEcCC------------------CeEEEE
Confidence 467778877654333 111121 1333344345788888887754 4554433221 166677
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPF 481 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~ 481 (627)
-|-..+-.+.++.|=.++ .++.+..+|.++++..++.
T Consensus 964 a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 964 ARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp EECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECTT
T ss_pred EeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCCC
Confidence 665555569999997665 6677999999999998873
No 250
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.11 E-value=1 Score=47.16 Aligned_cols=195 Identities=13% Similarity=0.188 Sum_probs=112.4
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
..+++|+|+++++.++.+.- ..+|..=.|-.+-++ +--.. +.|.-|++.-. +.+++++++
T Consensus 86 g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L-~lVT~--taVyHWs~~~~----------------s~P~kvFdR 145 (365)
T 2xzh_A 86 GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTV-ALVTD--NAVYHWSMEGE----------------SQPVKMFDR 145 (365)
T ss_dssp TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSEE-EEEES--SEEEEEESSTT----------------CCCEEEEEC
T ss_pred CCeEEEechHHhhhhcceec-CCccEEEEecCCCeE-EEEcC--CcEEEEcccCC----------------CCCceeeec
Confidence 35799999999988887775 357888888655544 33333 35899998511 122567766
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeC-------CCeEEEEEcCCCCCeeecccccccccCCCCCCCccCCCCCCCccccc
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSS-------RGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPVLSVPWWSSPSFMIN 516 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~-------dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~~~~~~~~~~~~s~~ 516 (627)
+.-.....|..-.-++|.+|++..+- .|.+.||.++.. -..-+++|... |+
T Consensus 146 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~---------------------F~ 203 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAAS---------------------FA 203 (365)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEE---------------------EE
T ss_pred chhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeee---------------------eE
Confidence 55555566889999999999998654 478889998754 33346666431 23
Q ss_pred cCCCCCCCCCCeeeeeeeeeecCCCCccccccccc--cccCCccCCCccceeeecccccccCCCcccccc-cCcceEEEE
Q 046828 517 QPSFSLPPPLPVTLSVVSRIKNNNSGWLNTVSSTA--SSTAGKTSIPSGALAAVFHSSLHQDLQPLDSKV-NDLEHVLVY 593 (627)
Q Consensus 517 q~~~~~~~p~~~~l~~~~~i~~~~~~w~~~~~~~~--~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~-~~~~~l~v~ 593 (627)
++++... +.+.+|-..+.-+.. | +.++=.. ...+|....+ -...++|-...+.+.=++...+ ++-.=+||+
T Consensus 204 ~~~~~g~-~~~~~lf~fa~r~~~--g--~kLhIiEi~~~~~~~~~f~-kk~vdi~fppea~~DFPVamqvs~kygviyvi 277 (365)
T 2xzh_A 204 QFKMEGN-AEESTLFCFAVRGQA--G--GKLHIIEVGTPPTGNQPFP-KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 277 (365)
T ss_dssp EECCTTC-SSCEEEEEEEEEETT--E--EEEEEEECSSCCTTCCCCC-CEEEEECCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred EEecCCC-CCCceEEEEEEecCC--C--cEEEEEEcCCCCCCCCCcc-cccceeeCCccccCCceEEEEecccCCEEEEE
Confidence 3444322 233444333322221 1 1111111 0101111222 2455555443332222222233 566679999
Q ss_pred cCCCcEEEEEeec
Q 046828 594 TPSGHVVQYKLLS 606 (627)
Q Consensus 594 ~~~G~l~~y~l~p 606 (627)
+-.|+++.|+|+.
T Consensus 278 TK~G~ihlyDleT 290 (365)
T 2xzh_A 278 TKYGYIHLYDLET 290 (365)
T ss_dssp ETTSEEEEEETTT
T ss_pred eCCcEEEEEEccc
Confidence 9999999999863
No 251
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.01 E-value=4.1 Score=42.61 Aligned_cols=48 Identities=10% Similarity=0.192 Sum_probs=41.3
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEe-cCcEEEEEeCCeEEEEeCCC
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRC-SPRIVAVGLAAQIYCFDALT 227 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~-s~~~LaV~~~~~I~i~D~~t 227 (627)
++++++|+++.+.+++..++..|.==++ +.+.|+-..+..||-|++..
T Consensus 87 ~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVyHWs~~~ 135 (365)
T 2xzh_A 87 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 135 (365)
T ss_dssp TEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEESSEEEEEESST
T ss_pred CeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEcCCcEEEEcccC
Confidence 6799999999999999999886654444 67999999999999999865
No 252
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=94.92 E-value=0.14 Score=51.49 Aligned_cols=102 Identities=12% Similarity=-0.018 Sum_probs=64.3
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
..++.|..||.. ++ +..+..+...+..++|+++|+++++...++. |.+|+.. |. ...+.
T Consensus 64 ~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~-v~~~~~~--------g~----------~~~~~ 122 (305)
T 3dr2_A 64 LVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRA-ITRSDAD--------GQ----------AHLLV 122 (305)
T ss_dssp TTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTE-EEEECTT--------SC----------EEEEE
T ss_pred CCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCE-EEEECCC--------CC----------EEEEE
Confidence 356789999984 44 4566666778999999999997776555454 6788753 21 01222
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEE----EeC-----------CCeEEEEEcCCCCCe
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAI----VSS-----------RGTCHIFVLTPFGGE 484 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las----~S~-----------dgTvhIw~i~~~gg~ 484 (627)
....+.....+.+|++++||++.++ ++. .+.-.||.+++.++.
T Consensus 123 ~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~ 180 (305)
T 3dr2_A 123 GRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP 180 (305)
T ss_dssp CEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC
T ss_pred eccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc
Confidence 2222222223788999999998876 332 124677777764443
No 253
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=94.81 E-value=2.4 Score=47.70 Aligned_cols=23 Identities=4% Similarity=-0.142 Sum_probs=18.9
Q ss_pred ccCCCEEEEEeCCCeEEEEEcCC
Q 046828 458 SHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 458 SpDg~~Las~S~dgTvhIw~i~~ 480 (627)
...+..|.+++.||.++.||.+.
T Consensus 481 ~tagg~vf~gt~dg~l~A~D~~t 503 (599)
T 1w6s_A 481 ATAGDLVFYGTLDGYLKARDSDT 503 (599)
T ss_dssp EETTTEEEEECTTSEEEEEETTT
T ss_pred EecCCEEEEECCCCeEEEEECCC
Confidence 34677888899999999999875
No 254
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=94.61 E-value=0.92 Score=44.98 Aligned_cols=87 Identities=16% Similarity=0.181 Sum_probs=56.6
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH 444 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~ 444 (627)
+.|..+| .+++.+..+..+...+.++.++++|.+.+. +.+|. +..||. . |. .++++.
T Consensus 195 ~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~-t~~~g-l~~~~~--~------g~------------~~~~~~ 251 (330)
T 3hxj_A 195 DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVT-SLDGH-LYAINP--D------GT------------EKWRFK 251 (330)
T ss_dssp SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEE-ETTTE-EEEECT--T------SC------------EEEEEE
T ss_pred CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEE-cCCCe-EEEECC--C------CC------------EeEEee
Confidence 6788888 677777777766677999999999987664 44554 566663 2 21 344443
Q ss_pred ecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEE
Q 046828 445 RGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 445 rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~ 477 (627)
.+. ..+.++.+.+++ .|.+++.+|.+..|+
T Consensus 252 ~~~--~~~~~~~~~~~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 252 TGK--RIESSPVIGNTD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp CSS--CCCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred CCC--CccccceEcCCC-eEEEecCCCCEEEEC
Confidence 321 123445666566 466778888888886
No 255
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.50 E-value=2 Score=46.68 Aligned_cols=197 Identities=12% Similarity=0.163 Sum_probs=109.1
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
..++.|+|++++..++.+.-. .+|..=.|-.+- .|+-... +.|.-|++.- .+.+++++++
T Consensus 85 g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~-~l~lVT~--taVyHWsi~~----------------~s~P~kvFdR 144 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVTD--NAVYHWSMEG----------------ESQPVKMFDR 144 (494)
T ss_dssp TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT-EEEEECS--SEEEEEESSS----------------SCCCEEEEEC
T ss_pred CCeEEEEchHHhhhhcceecC-CCceEEEecCCC-eEEEEcC--CeeEEecccC----------------CCCchhheec
Confidence 468999999999888777754 456666665444 3444333 3589999851 1122567766
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeC-------CCeEEEEEcCCCCCeeecccccccccCCCCCCCccCCCCCCCccccc
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSS-------RGTCHIFVLTPFGGETVLQIQNSHVDRPTLSPVLSVPWWSSPSFMIN 516 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~-------dgTvhIw~i~~~gg~~~~~~h~s~v~~~~~~p~~~~~~~~~~~~s~~ 516 (627)
..-.....|..-.-++|.+|++..+- .|.+.+|.++..- ...+++|... |+
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~---------------------F~ 202 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAAS---------------------FA 202 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEE---------------------EE
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeee---------------------eE
Confidence 55555566989999999999996553 4788899987643 3446777432 22
Q ss_pred cCCCCCCCCCCeeeeeeeeeecCCCCccccccccccccCCccCCCccceeeecccccccCCCcccccc-cCcceEEEEcC
Q 046828 517 QPSFSLPPPLPVTLSVVSRIKNNNSGWLNTVSSTASSTAGKTSIPSGALAAVFHSSLHQDLQPLDSKV-NDLEHVLVYTP 595 (627)
Q Consensus 517 q~~~~~~~p~~~~l~~~~~i~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~-~~~~~l~v~~~ 595 (627)
+++++. -+.+.+|-..+.-... |..=.|-.--...+|....+ -...++|-...+.+.-++...+ ++-.=+||++-
T Consensus 203 ~~~~~g-~~~~~~lf~fa~r~~~--g~kLhi~Ei~~~~~~~~~f~-kk~vdv~fppe~~~DFPvamqvs~kygviyviTK 278 (494)
T 1bpo_A 203 QFKMEG-NAEESTLFCFAVRGQA--GGKLHIIEVGTPPTGNQPFP-KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 278 (494)
T ss_dssp EEECTT-CSSEEEEEEEEECSTT--CCEEEEEECSCCCTTCCCCC-CEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET
T ss_pred EEecCC-CCCCceEEEEEEecCC--CcEEEEEEcCCCccCCCCcc-ceeeeeeCCcccccCceeEEEecccCCEEEEEec
Confidence 333321 1233333333321111 11111100000001111122 2455555443332222222222 56667899999
Q ss_pred CCcEEEEEeec
Q 046828 596 SGHVVQYKLLS 606 (627)
Q Consensus 596 ~G~l~~y~l~p 606 (627)
.|+++.|+|+.
T Consensus 279 ~G~i~lyDleT 289 (494)
T 1bpo_A 279 YGYIHLYDLET 289 (494)
T ss_dssp TSEEEEEETTT
T ss_pred CceEEEEeccc
Confidence 99999999863
No 256
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=94.37 E-value=0.11 Score=59.92 Aligned_cols=96 Identities=14% Similarity=0.079 Sum_probs=55.7
Q ss_pred CCeEEEEECCCC-eEEE-EeccCCCCeEEEEECCCCCEEEEEeCCC--C--EEEEEeCCCCCCCCCCCCCccccCCCCce
Q 046828 364 AGMVVVKDIVSR-SVIS-QFRAHTSPISALCFDRSGTLLVTASIHG--N--NINIFRIMPSSSKGRSGSASQTYDWTSSH 437 (627)
Q Consensus 364 dG~V~IwD~~s~-~~l~-~~~aH~~~Is~laFspdG~lLaTaS~dG--t--~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~ 437 (627)
...|+++|+.++ +.+. .+.. ....++|+|||+.|+..+.+. . .|.++++. ++. ...
T Consensus 200 ~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lg-------t~~--------~~~ 261 (751)
T 2xe4_A 200 VYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMG-------KLQ--------SED 261 (751)
T ss_dssp CEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETT-------SCG--------GGC
T ss_pred eEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECC-------CCc--------hhc
Confidence 346889999887 5321 1111 134678999998888777652 2 24555553 111 001
Q ss_pred eEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCC---eEEEEEcCC
Q 046828 438 VHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRG---TCHIFVLTP 480 (627)
Q Consensus 438 ~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dg---TvhIw~i~~ 480 (627)
..+++. .......++.|||||++|+..+.++ .++++++..
T Consensus 262 ~lv~~~---~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 262 VCLYEE---HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp EEEEEC---CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred EEEEec---CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 234432 1222367899999999999877432 355556553
No 257
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.05 E-value=8.2 Score=41.91 Aligned_cols=48 Identities=10% Similarity=0.192 Sum_probs=40.8
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEE-ecCcEEEEEeCCeEEEEeCCC
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVR-CSPRIVAVGLAAQIYCFDALT 227 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~-~s~~~LaV~~~~~I~i~D~~t 227 (627)
++++++|+.+.+.+++..+...|.==+ ++++.|+...+..||-|++..
T Consensus 86 ~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~ 134 (494)
T 1bpo_A 86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 134 (494)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSS
T ss_pred CeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccC
Confidence 789999999999999999988654333 367999999999999999864
No 258
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=93.65 E-value=6.4 Score=43.85 Aligned_cols=56 Identities=11% Similarity=-0.017 Sum_probs=40.0
Q ss_pred EEEEEECCCCceEEEEecCCeE----------EEEEecCcEEEEE-eCCeEEEEeCCCCceeEEEEc
Q 046828 181 AVRFYSLRSHNYVHVLRFRSTV----------YMVRCSPRIVAVG-LAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 181 tV~lwdl~t~~~V~tL~f~s~V----------~sV~~s~~~LaV~-~~~~I~i~D~~t~e~~~tl~~ 236 (627)
.|.-+|.+||+.+-+++...+. ..+.+....|.++ .+++|+.+|+.|++.+.....
T Consensus 79 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 79 RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 3888999999999888754321 2223334455555 577999999999999887754
No 259
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=93.52 E-value=0.3 Score=54.94 Aligned_cols=110 Identities=14% Similarity=0.109 Sum_probs=70.8
Q ss_pred CCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC--------------CEEEEEeCCCCCCC-CCCCC
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG--------------NNINIFRIMPSSSK-GRSGS 426 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG--------------t~I~Vwdi~p~~~~-~~~g~ 426 (627)
..++.|.++|..+.+.+.++.--. .-.-++++|||+++.+++.+. ..|.|+|+. .... -..|.
T Consensus 172 ~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~-~~~~~v~~Gk 249 (595)
T 1fwx_A 172 NYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA-EIEKAIAAGD 249 (595)
T ss_dssp GEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH-HHHHHHHHTC
T ss_pred ccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecc-ceeEeccCCC
Confidence 467899999999999999887433 346688999999999999765 336677653 1100 00010
Q ss_pred CccccCCCCceeEEEEEe------------ecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCC
Q 046828 427 ASQTYDWTSSHVHLYKLH------------RGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPF 481 (627)
Q Consensus 427 ~~~~~~~~~~~~~l~~l~------------rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~ 481 (627)
. .+-.. +.+...+ -|. ...++.|||||+++.+++ .+.+|+++++...
T Consensus 250 ~----~~i~~-V~VID~~~~~~~~~~~~Ipvg~---~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 250 Y----QELNG-VKVVDGRKEASSLFTRYIPIAN---NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp S----EEETT-EEEEECSGGGCCSSEEEEEEES---SCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred e----eEECc-EEEEeCcccCCceeEEEEecCC---CceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 0 00000 1222222 222 146799999999988877 5779999999854
No 260
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=92.95 E-value=8.6 Score=38.78 Aligned_cols=95 Identities=17% Similarity=0.112 Sum_probs=55.2
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC-CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG-NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG-t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.+.|.+.|+........+.........|+++|++..|..+.... ..|..+++. |+ ....
T Consensus 98 ~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d--------G~------------~~~~ 157 (316)
T 1ijq_A 98 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV------------DIYS 157 (316)
T ss_dssp TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC------------CEEE
T ss_pred CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--------CC------------CeEE
Confidence 45677777765433333333334568999999666555554432 236666653 22 1111
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLT 479 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~ 479 (627)
+... .-.....|+|+++++.|..+. ..++|..++++
T Consensus 158 ~~~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 158 LVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp EECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 2111 112478999999888777665 45688888876
No 261
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=92.70 E-value=9.1 Score=42.42 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=40.3
Q ss_pred cEEEEEEC-CCCceEEEEecCCe--E----------EEEEecCcEEEEE-eCCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSL-RSHNYVHVLRFRST--V----------YMVRCSPRIVAVG-LAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl-~t~~~V~tL~f~s~--V----------~sV~~s~~~LaV~-~~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.|.-+|. ++|+.+-+.+.... + ..+.+...+|.++ .+++|+.+|+.|++.+.+...
T Consensus 73 ~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 143 (571)
T 2ad6_A 73 NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEVEV 143 (571)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEEecC
Confidence 45888999 99999988775431 1 1233344555555 567899999999999887653
No 262
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=92.13 E-value=8.9 Score=37.02 Aligned_cols=95 Identities=9% Similarity=0.085 Sum_probs=52.7
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC--CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH--GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d--Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
.+.|.++|+........+.........|+|+|++..|..+... ...|.++++. |.. ....
T Consensus 100 ~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d--------g~~----------~~~~ 161 (267)
T 1npe_A 100 LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD--------GTN----------RRIL 161 (267)
T ss_dssp TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT--------SCC----------CEEE
T ss_pred CCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC--------CCC----------cEEE
Confidence 3456666665432222222222346889999975555555443 2346777763 210 1111
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLT 479 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~ 479 (627)
...+. .....|+|++|+++|.++. ..++|.+|++.
T Consensus 162 -~~~~~--~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~ 197 (267)
T 1npe_A 162 -AQDNL--GLPNGLTFDAFSSQLCWVDAGTHRAECLNPA 197 (267)
T ss_dssp -ECTTC--SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred -EECCC--CCCcEEEEcCCCCEEEEEECCCCEEEEEecC
Confidence 11121 2478999999988776555 45788888875
No 263
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=92.05 E-value=8.7 Score=43.06 Aligned_cols=57 Identities=11% Similarity=0.059 Sum_probs=39.0
Q ss_pred cEEEEEEC-CCCceEEEEecCCeE------------EEEEe--cC-c---EEEEE-eCCeEEEEeCCCCceeEEEEc
Q 046828 180 TAVRFYSL-RSHNYVHVLRFRSTV------------YMVRC--SP-R---IVAVG-LAAQIYCFDALTLESKFSVLT 236 (627)
Q Consensus 180 ~tV~lwdl-~t~~~V~tL~f~s~V------------~sV~~--s~-~---~LaV~-~~~~I~i~D~~t~e~~~tl~~ 236 (627)
+.|.-+|. ++|+.+-+.+..... ..+.+ .. + +|.++ .+++++.+|+.|++.+.....
T Consensus 73 ~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~ 149 (599)
T 1w6s_A 73 NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVEN 149 (599)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecC
Confidence 45888899 999999888754321 12344 22 2 24444 577999999999999877643
No 264
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=91.99 E-value=13 Score=38.68 Aligned_cols=93 Identities=8% Similarity=-0.017 Sum_probs=50.7
Q ss_pred eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC-CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q 046828 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG-NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH 444 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG-t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~ 444 (627)
.|.+.|+........+.........|+++|++..|..+.... ..|..++.. |.. .... ..
T Consensus 182 ~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--------G~~----------~~~~-~~ 242 (386)
T 3v65_B 182 RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------GSG----------RRII-AD 242 (386)
T ss_dssp EEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SCS----------CEEE-EC
T ss_pred eEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--------CCC----------cEEE-EE
Confidence 444445443322222333334568999999766665555443 335666653 210 1111 11
Q ss_pred ecCCcCcEEEEEEccCCCEEEEEeC-CCeEEEEEcC
Q 046828 445 RGMTSAVIQDICFSHYSQWIAIVSS-RGTCHIFVLT 479 (627)
Q Consensus 445 rG~t~a~I~sIaFSpDg~~Las~S~-dgTvhIw~i~ 479 (627)
.+. ..-..|+|+|+++.|..+.. .++|..++++
T Consensus 243 ~~~--~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 243 THL--FWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp SSC--SCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred CCC--CCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 222 23689999998777766644 5567777764
No 265
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=91.69 E-value=5.2 Score=42.01 Aligned_cols=97 Identities=14% Similarity=0.269 Sum_probs=61.9
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECC----CCCE--EEEEeCCC---CEEEEEeCCCCCCCCCCCCCccccCC
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDR----SGTL--LVTASIHG---NNINIFRIMPSSSKGRSGSASQTYDW 433 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFsp----dG~l--LaTaS~dG---t~I~Vwdi~p~~~~~~~g~~~~~~~~ 433 (627)
..+-+.|||+ +++.+..+.. ..+..+..-| .|+. ||.++..+ ..|+||++.|.. +
T Consensus 48 k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~-----~-------- 111 (355)
T 3amr_A 48 KKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN-----G-------- 111 (355)
T ss_dssp TTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT-----C--------
T ss_pred CCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC-----C--------
Confidence 4578999999 7888888864 4566665555 2332 45555533 458999886432 1
Q ss_pred CCceeEEEEEee-----cCCcCcEEEEEE--ccC-CC-EEEEEeCCCeEEEEEcCC
Q 046828 434 TSSHVHLYKLHR-----GMTSAVIQDICF--SHY-SQ-WIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 434 ~~~~~~l~~l~r-----G~t~a~I~sIaF--SpD-g~-~Las~S~dgTvhIw~i~~ 480 (627)
.+..+-+ +.....++.||+ +++ ++ ++.+...+|.+..|++..
T Consensus 112 -----~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~ 162 (355)
T 3amr_A 112 -----TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKA 162 (355)
T ss_dssp -----CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEE
T ss_pred -----ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEe
Confidence 1222211 111134788998 774 44 688888899999999865
No 266
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=91.53 E-value=15 Score=38.47 Aligned_cols=94 Identities=16% Similarity=0.092 Sum_probs=56.2
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEe-C-CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTAS-I-HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS-~-dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
.+.|.+.|+........+.........|+++|.+..|.-+. . .+. |..+++. |.. ....
T Consensus 180 ~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~-I~~~~~d--------G~~----------~~~~ 240 (400)
T 3p5b_L 180 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLN--------GVD----------IYSL 240 (400)
T ss_dssp TTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCC-EEEEETT--------SCS----------CEEE
T ss_pred CCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCE-EEEEeCC--------CCc----------cEEE
Confidence 45677777765544444443344578999999655555554 2 244 6666653 210 1111
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeC-CCeEEEEEcC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSS-RGTCHIFVLT 479 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~-dgTvhIw~i~ 479 (627)
+..+. .....|+|+++++.|..+.. .++|..++++
T Consensus 241 -~~~~l--~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 241 -VTENI--QWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp -ECSSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred -EECCC--CceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 11222 24789999998888877654 5677777765
No 267
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=91.37 E-value=4.1 Score=45.73 Aligned_cols=97 Identities=11% Similarity=0.009 Sum_probs=53.9
Q ss_pred CeEEEEECCCCeEEEEeccCC---------CCeEEEEECC-CCCEEEEEeCCCC----------EEEEEeCCCCCCCCCC
Q 046828 365 GMVVVKDIVSRSVISQFRAHT---------SPISALCFDR-SGTLLVTASIHGN----------NINIFRIMPSSSKGRS 424 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~---------~~Is~laFsp-dG~lLaTaS~dGt----------~I~Vwdi~p~~~~~~~ 424 (627)
..|..||..+..-......+. ..-.++.|.. +|++++.++.++. .|.+||.. +
T Consensus 369 ~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~-------~ 441 (656)
T 1k3i_A 369 TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG-------T 441 (656)
T ss_dssp SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTT-------S
T ss_pred cceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCC-------C
Confidence 468888888765333222221 1235566654 8899999875431 35666643 1
Q ss_pred CCCccccCCCCceeEEEEEeecCCcCc-EEEEEEccCCCEEEEEeCC-----------CeEEEEEcCC
Q 046828 425 GSASQTYDWTSSHVHLYKLHRGMTSAV-IQDICFSHYSQWIAIVSSR-----------GTCHIFVLTP 480 (627)
Q Consensus 425 g~~~~~~~~~~~~~~l~~l~rG~t~a~-I~sIaFSpDg~~Las~S~d-----------gTvhIw~i~~ 480 (627)
.. +.... ...+...+ -.+.+..||++.+++++.+ .++.+|+...
T Consensus 442 ~~-----------W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t 497 (656)
T 1k3i_A 442 SP-----------NTVFA-SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ 497 (656)
T ss_dssp CC-----------EEEEC-TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred CC-----------eeEEc-cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence 11 11110 00111122 2345667899999998854 5789998754
No 268
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=91.36 E-value=3.6 Score=47.19 Aligned_cols=49 Identities=10% Similarity=0.096 Sum_probs=29.8
Q ss_pred cEEEEEECCCC-ceEEEEecCCeEEEEEecC--cEEE-EEeC-----CeEEEEeCCCCc
Q 046828 180 TAVRFYSLRSH-NYVHVLRFRSTVYMVRCSP--RIVA-VGLA-----AQIYCFDALTLE 229 (627)
Q Consensus 180 ~tV~lwdl~t~-~~V~tL~f~s~V~sV~~s~--~~La-V~~~-----~~I~i~D~~t~e 229 (627)
.+|.++|+.++ +.+.. .+.....++.+++ +.|+ +..+ .+|+++++.+.+
T Consensus 201 ~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~ 258 (751)
T 2xe4_A 201 YTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQ 258 (751)
T ss_dssp EEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCG
T ss_pred EEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCc
Confidence 57999999999 64311 0111223566776 3454 4443 268999998875
No 269
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=90.82 E-value=2 Score=46.47 Aligned_cols=111 Identities=12% Similarity=0.150 Sum_probs=69.6
Q ss_pred CCCeEEEEECCCCeEEEEeccC----CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCcee
Q 046828 363 IAGMVVVKDIVSRSVISQFRAH----TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHV 438 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH----~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~ 438 (627)
.+..||.-++.....-+.++.- -..|..|..||+|++||..+.++ |.|-.+ |.... .... .+.-.....
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~--V~Vv~L-P~~~~---~~~~-~~~~~~~q~ 111 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNE--IFVMEV-PWGYS---NVED-VSIQDAFQI 111 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSE--EEEEEC-CTTCS---CCCC-HHHHHTTEE
T ss_pred ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCe--EEEEEe-cCccc---cCcc-cccccccce
Confidence 4578888887744333333321 22578899999999999998873 789888 53221 1000 000001112
Q ss_pred EEEEEee--cCCcCcEEEEEEcc---CCCEEEEEeCCCeEEEEEcCC
Q 046828 439 HLYKLHR--GMTSAVIQDICFSH---YSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 439 ~l~~l~r--G~t~a~I~sIaFSp---Dg~~Las~S~dgTvhIw~i~~ 480 (627)
+.|.+.. +...+.|..+-|.| .+..|++-.+|++|++|++..
T Consensus 112 ~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 112 FHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp EEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred eEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 2333311 11235699999999 456899999999999999986
No 270
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=89.67 E-value=20 Score=36.73 Aligned_cols=94 Identities=7% Similarity=-0.019 Sum_probs=52.9
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCC-CEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHG-NNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dG-t~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
+.|.+.|+........+.........|+++|.+..|..+.... ..|..+++. |.. .... .
T Consensus 138 ~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--------G~~----------~~~~-~ 198 (349)
T 3v64_C 138 SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------GSG----------RRII-A 198 (349)
T ss_dssp TEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SCS----------CEES-C
T ss_pred CeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--------CCC----------cEEE-E
Confidence 4566666654433333333334568999999655555554433 336666653 210 0111 1
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcC
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLT 479 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~ 479 (627)
..+. ..-..|+|+|+++.|..+. ..++|..++++
T Consensus 199 ~~~~--~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 199 DTHL--FWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp CSSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ECCC--CCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 1122 2368999999887776665 45677777765
No 271
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=89.64 E-value=10 Score=46.94 Aligned_cols=48 Identities=10% Similarity=0.192 Sum_probs=40.6
Q ss_pred cEEEEEECCCCceEEEEecCCeEEEEEe-cCcEEEEEeCCeEEEEeCCC
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTVYMVRC-SPRIVAVGLAAQIYCFDALT 227 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V~sV~~-s~~~LaV~~~~~I~i~D~~t 227 (627)
++++|+|+.+.+.+++..|+.+|.==++ +++.|+...+..||-|++..
T Consensus 86 ~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~ 134 (1630)
T 1xi4_A 86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 134 (1630)
T ss_pred CeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCC
Confidence 6799999999999999999886543333 67999999999999999964
No 272
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=89.08 E-value=17 Score=35.04 Aligned_cols=71 Identities=11% Similarity=0.061 Sum_probs=43.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEE
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIA 465 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~La 465 (627)
.....|+|+|++..|..+......|.++|.. +. .+..+..+.. ....|++ |+.+|.
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~--------g~------------~~~~~~~~~~--~P~gi~~--d~~~ly 222 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPA--------QP------------GRRKVLEGLQ--YPFAVTS--YGKNLY 222 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT--------EE------------EEEEEEECCC--SEEEEEE--ETTEEE
T ss_pred CCCcEEEEcCCCCEEEEEECCCCEEEEEecC--------CC------------ceEEEecCCC--CceEEEE--eCCEEE
Confidence 3468899999988777777666668888874 11 2222222321 2456665 456666
Q ss_pred EEe-CCCeEEEEEcCC
Q 046828 466 IVS-SRGTCHIFVLTP 480 (627)
Q Consensus 466 s~S-~dgTvhIw~i~~ 480 (627)
++. ..+.|.+++...
T Consensus 223 va~~~~~~v~~~d~~~ 238 (267)
T 1npe_A 223 YTDWKTNSVIAMDLAI 238 (267)
T ss_dssp EEETTTTEEEEEETTT
T ss_pred EEECCCCeEEEEeCCC
Confidence 655 457887777653
No 273
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=88.96 E-value=3.6 Score=41.07 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=49.5
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEE
Q 046828 374 SRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQ 453 (627)
Q Consensus 374 s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~ 453 (627)
..+.+..|..+ .....++|+++|+++++-...++ |..||.. +. ....+.. .....
T Consensus 21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~-I~~~d~~--------g~------------~~~~~~~---~~~p~ 75 (306)
T 2p4o_A 21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGE-IVSITPD--------GN------------QQIHATV---EGKVS 75 (306)
T ss_dssp CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTE-EEEECTT--------CC------------EEEEEEC---SSEEE
T ss_pred CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCe-EEEECCC--------Cc------------eEEEEeC---CCCce
Confidence 34566777654 45678999999997777666665 6777743 21 1111111 13589
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEc
Q 046828 454 DICFSHYSQWIAIVSSRGTCHIFVL 478 (627)
Q Consensus 454 sIaFSpDg~~Las~S~dgTvhIw~i 478 (627)
.|+|++|++++++.......+|+.+
T Consensus 76 gia~~~dG~l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 76 GLAFTSNGDLVATGWNADSIPVVSL 100 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEE
T ss_pred eEEEcCCCcEEEEeccCCcceEEEE
Confidence 9999999997665544334344443
No 274
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=87.74 E-value=14 Score=39.16 Aligned_cols=72 Identities=13% Similarity=0.045 Sum_probs=45.1
Q ss_pred eEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE
Q 046828 388 ISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI 466 (627)
Q Consensus 388 Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las 466 (627)
...++++| +|.++++-...+. |.+|+.. .+. ...+..+ +. ...-..|+|+||+++|.+
T Consensus 228 p~giavdp~~g~lyv~d~~~~~-V~~~~~~-------~~~----------~~~~~~~--~~-~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWNAGQ-VFRYDFT-------TQE----------TTPLFTI--QD-SGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp CCCEEECTTTCCEEEEETTTTE-EEEEETT-------TTE----------EEEEEEC--SS-SSCCEEEEECTTSSEEEE
T ss_pred ceEEEEeCCCCEEEEEECCCCE-EEEEECC-------CCc----------EEEEEEc--CC-CCcceeEEEcCCCCEEEE
Confidence 45678999 7877766555554 6777763 110 0012222 11 123578999999996555
Q ss_pred E-eCCCeEEEEEcCC
Q 046828 467 V-SSRGTCHIFVLTP 480 (627)
Q Consensus 467 ~-S~dgTvhIw~i~~ 480 (627)
+ ...+.|++|+.+.
T Consensus 287 ~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 287 VVVNQHYILRSDYDW 301 (430)
T ss_dssp EETTTTEEEEEEEET
T ss_pred EECCCCEEEEEeCCc
Confidence 5 4677899988764
No 275
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=87.51 E-value=24 Score=35.01 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=42.4
Q ss_pred eEEEEECCCCCEEEEEeC----------CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEE
Q 046828 388 ISALCFDRSGTLLVTASI----------HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICF 457 (627)
Q Consensus 388 Is~laFspdG~lLaTaS~----------dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaF 457 (627)
...|+++++|.+.++... .+. |.+|| |. |. ....+....|.....+..+++
T Consensus 231 P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~-v~~~d--~~------G~----------~~~~~~~~~g~~~~~~~~~~~ 291 (322)
T 2fp8_A 231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPK-GIKFD--EF------GN----------ILEVIPLPPPFAGEHFEQIQE 291 (322)
T ss_dssp EEEEEECTTSCEEEEEEEETTSSTTSCEEEE-EEEEC--TT------SC----------EEEEEECCTTTTTSCCCEEEE
T ss_pred CCCeEECCCCCEEEEecCcccccccCCCccE-EEEEC--CC------CC----------EEEEEECCCCCccccceEEEE
Confidence 677999999998777654 232 44555 32 21 112333333432234677777
Q ss_pred ccCCCEEEEEeCCCeEEEEEcCC
Q 046828 458 SHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 458 SpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.+++..++....+.|.+|++..
T Consensus 292 -~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 292 -HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp -ETTEEEEECSSCSEEEEEEC--
T ss_pred -eCCEEEEeecCCCceEEEeccc
Confidence 4666555555778899998764
No 276
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=87.21 E-value=33 Score=36.35 Aligned_cols=54 Identities=9% Similarity=-0.024 Sum_probs=34.9
Q ss_pred CCCeEEEEECCCCeEEEEe-ccCCCC-eEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 363 IAGMVVVKDIVSRSVISQF-RAHTSP-ISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~-~aH~~~-Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
..+.|..+|..+++....+ .....+ -..|+|+|+|..|..+....+.|+.++..
T Consensus 248 ~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 248 HHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp TCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 3567888888766552222 211122 34699999999777777766668887764
No 277
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=86.52 E-value=4.3 Score=42.55 Aligned_cols=97 Identities=10% Similarity=0.079 Sum_probs=60.2
Q ss_pred CCeEEEEECCCC----eEEEEeccC-CCCeEEEEECCCCCEEEEEeCC---------------CCEEEEEeCCCCCCCCC
Q 046828 364 AGMVVVKDIVSR----SVISQFRAH-TSPISALCFDRSGTLLVTASIH---------------GNNINIFRIMPSSSKGR 423 (627)
Q Consensus 364 dG~V~IwD~~s~----~~l~~~~aH-~~~Is~laFspdG~lLaTaS~d---------------Gt~I~Vwdi~p~~~~~~ 423 (627)
...|.||++... ..+..+.+. -...+.+++.++|++.+|.... .+ =+||.+.|.
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~-g~vyr~d~~----- 211 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW-SFVTYYSPN----- 211 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCC-EEEEEECTT-----
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCc-cEEEEEECC-----
Confidence 467777776543 223344432 2347899999999999987621 11 244544321
Q ss_pred CCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcCCCCC
Q 046828 424 SGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLTPFGG 483 (627)
Q Consensus 424 ~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~~~gg 483 (627)
.+..+..+.. .-+.|+||||+++|.++. ..++|+.|++...+.
T Consensus 212 ---------------~~~~~~~~l~--~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~ 255 (355)
T 3sre_A 212 ---------------DVRVVAEGFD--FANGINISPDGKYVYIAELLAHKIHVYEKHANWT 255 (355)
T ss_dssp ---------------CCEEEEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred ---------------eEEEeecCCc--ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc
Confidence 0111223433 258899999998887665 578999999986543
No 278
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=85.50 E-value=30 Score=34.17 Aligned_cols=70 Identities=10% Similarity=0.114 Sum_probs=43.8
Q ss_pred eEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEE
Q 046828 388 ISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIV 467 (627)
Q Consensus 388 Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~ 467 (627)
...| +|||+.|..+......|.+|++... |.. .. ..++. .+ .....|++++||++.++.
T Consensus 171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~------g~~-------~~-~~~~~--~~---~~P~gi~vd~dG~l~va~ 229 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDST------DKP-------GE-PEIFV--EQ---TNIDDFAFDVEGNLYGAT 229 (306)
T ss_dssp EEEE--EEETTEEEEEETTTTEEEEEEBCTT------SCB-------CC-CEEEE--ES---CCCSSEEEBTTCCEEEEC
T ss_pred CCCc--CcCCCEEEEEeCCCCEEEEEEeCCC------CCC-------Cc-cEEEe--cc---CCCCCeEECCCCCEEEEe
Confidence 3445 8899877777666556889997521 110 00 12221 11 124678999999887777
Q ss_pred eCCCeEEEEEc
Q 046828 468 SSRGTCHIFVL 478 (627)
Q Consensus 468 S~dgTvhIw~i 478 (627)
...+.|.+|+.
T Consensus 230 ~~~~~V~~~~~ 240 (306)
T 2p4o_A 230 HIYNSVVRIAP 240 (306)
T ss_dssp BTTCCEEEECT
T ss_pred CCCCeEEEECC
Confidence 77888888874
No 279
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=85.12 E-value=57 Score=37.03 Aligned_cols=75 Identities=17% Similarity=0.326 Sum_probs=48.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee-----cCCcCcEEEEEEccC
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR-----GMTSAVIQDICFSHY 460 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r-----G~t~a~I~sIaFSpD 460 (627)
..|.+|..+++|.+.+ |+.+|- +..|+.. ++. ...+.... +.....|.+|+..++
T Consensus 357 ~~V~~i~~d~~g~lWi-Gt~~~G-l~~~~~~-------~~~-----------~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 416 (795)
T 4a2l_A 357 NVVSCIVEDKDKNLWI-GTNDGG-LNLYNPI-------TQR-----------FTSYTLQEDESARGIGSNNIKAVYVDEK 416 (795)
T ss_dssp SSEEEEEECTTSCEEE-EESSSC-EEEECTT-------TCC-----------EEEECCC------CCSCSCEEEEEEETT
T ss_pred CeeEEEEECCCCCEEE-EECCCC-eEEEcCC-------CCc-----------EEEEecCCCCcccCCCCccEEEEEEcCC
Confidence 4699999999999776 444433 6788854 221 11121111 222345999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCC
Q 046828 461 SQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 461 g~~Las~S~dgTvhIw~i~~ 480 (627)
++.|-+++.++-+.+|+...
T Consensus 417 g~~lWigt~~~Gl~~~d~~~ 436 (795)
T 4a2l_A 417 KSLVYIGTHAGGLSILHRNS 436 (795)
T ss_dssp TTEEEEEETTTEEEEEETTT
T ss_pred CCEEEEEeCcCceeEEeCCC
Confidence 98566677777788887653
No 280
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=84.39 E-value=44 Score=35.28 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=35.4
Q ss_pred CCeEEEEECCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 364 AGMVVVKDIVSRSVISQFRA-HTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~a-H~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
.+.|..+|...+.....+.. ....-..|+|+|+|++|..+....+.|.+|+..
T Consensus 247 ~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 247 AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 46788888876654222221 113357899999999777777766668888764
No 281
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=83.19 E-value=5.6 Score=41.38 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=66.7
Q ss_pred CCCeEEEEECC---CCeEEEEec--cCC-----------CCeEEEEECCCCCEEEEEeCC-CCEEEEEeCCCCCCCCCCC
Q 046828 363 IAGMVVVKDIV---SRSVISQFR--AHT-----------SPISALCFDRSGTLLVTASIH-GNNINIFRIMPSSSKGRSG 425 (627)
Q Consensus 363 ~dG~V~IwD~~---s~~~l~~~~--aH~-----------~~Is~laFspdG~lLaTaS~d-Gt~I~Vwdi~p~~~~~~~g 425 (627)
.+..|..+|+. +++.+..+. +.. .....|+.+++|..-+|.+.. +. ||.+.|. |
T Consensus 98 g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~---I~rV~pd------G 168 (334)
T 2p9w_A 98 GASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA---IARVSAD------G 168 (334)
T ss_dssp SCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE---EEEECTT------S
T ss_pred CCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe---EEEEeCC------C
Confidence 46789999998 776554433 221 247899999999999999877 65 4555443 2
Q ss_pred CCccccCCCCceeEEEEEee--cCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 426 SASQTYDWTSSHVHLYKLHR--GMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 426 ~~~~~~~~~~~~~~l~~l~r--G~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
.. ...+-+.. ..+..-...|++.|||+.|++....|.+..|++.
T Consensus 169 ~~----------~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 169 KT----------VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CC----------EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CE----------EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 10 12222222 2222236789999999999998789999999987
No 282
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=81.45 E-value=14 Score=36.67 Aligned_cols=86 Identities=8% Similarity=0.066 Sum_probs=50.8
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
..|.|..+|..+++....... ......|+|+|+|+.|..+......|.+|++.... .+. ...+.
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~----~~~-----------~~~~~ 226 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK----KGT-----------AEVLV 226 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTT----TTC-----------EEEEE
T ss_pred CCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCc----CCc-----------cceEE
Confidence 457899999887764332222 12345799999999766665443347888875110 011 12221
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSS 469 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~ 469 (627)
-.. . ...|++.+||++.++...
T Consensus 227 ~~~----g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 227 KIP----N-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp ECS----S-EEEEEECTTSCEEEEEEE
T ss_pred eCC----C-CCCeEECCCCCEEEEecC
Confidence 111 2 678999999986655543
No 283
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=79.20 E-value=15 Score=45.56 Aligned_cols=107 Identities=10% Similarity=0.171 Sum_probs=67.6
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
..++.|+|+.++..++.+.- ..+|..=.|-.+-++ +-... +.|.-|++.-. +.++++++.
T Consensus 85 g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l-~lVT~--~aVyHW~~~~~----------------s~P~k~fdR 144 (1630)
T 1xi4_A 85 GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTV-ALVTD--NAVYHWSMEGE----------------SQPVKMFDR 144 (1630)
T ss_pred CCeEEEeehHHhhhhccccc-CCCceEEEecCCCee-EEEcC--CeEEEeccCCC----------------CccHHHHhc
Confidence 46799999999877666554 346777777554443 33332 34889998510 011344444
Q ss_pred eecCCcCcEEEEEEccCCCEEEEEeC-------CCeEEEEEcCCCCCeeeccccc
Q 046828 444 HRGMTSAVIQDICFSHYSQWIAIVSS-------RGTCHIFVLTPFGGETVLQIQN 491 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpDg~~Las~S~-------dgTvhIw~i~~~gg~~~~~~h~ 491 (627)
..-.....|..-.-++|.+|++..+- .|.+.+|.++..-. ..+++|-
T Consensus 145 ~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha 198 (1630)
T 1xi4_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHA 198 (1630)
T ss_pred chhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhH
Confidence 33333456888899999999997553 57888998875433 3356663
No 284
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=79.18 E-value=16 Score=41.63 Aligned_cols=29 Identities=10% Similarity=0.023 Sum_probs=21.7
Q ss_pred eEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 388 ISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 388 Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
-..|+|+|++..|..+......|.++++.
T Consensus 542 PnGlavd~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 542 PNGITLDLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred ccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence 46799999877777777666668888864
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=79.11 E-value=99 Score=35.69 Aligned_cols=96 Identities=18% Similarity=0.131 Sum_probs=56.7
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI-HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~-dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
..+.|.+.|+........+.........|+++|.+..|..+.. ....|.++++. |. ...
T Consensus 491 ~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d--------G~------------~~~ 550 (791)
T 3m0c_C 491 VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV------------DIY 550 (791)
T ss_dssp TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC------------CEE
T ss_pred CCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC--------CC------------ceE
Confidence 3467888888755443334444456789999998555555543 21336666653 32 112
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEeC-CCeEEEEEcC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVSS-RGTCHIFVLT 479 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S~-dgTvhIw~i~ 479 (627)
.+... .-.....|++.++++.|..+.. ..+|..++++
T Consensus 551 ~lv~~-~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 551 SLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp EEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEeC-CCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence 22221 1134789999988888777654 4466666664
No 286
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=78.74 E-value=3 Score=47.62 Aligned_cols=94 Identities=15% Similarity=0.097 Sum_probs=51.5
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC-C-CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI-H-GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLY 441 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~-d-Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~ 441 (627)
.+.|.++|+........+.........|+++|.+.+|..+.. . ++ |.++++. |.. ..+.
T Consensus 474 ~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~-I~~~~~d--------G~~----------~~~l 534 (699)
T 1n7d_A 474 LGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLN--------GVD----------IYSL 534 (699)
T ss_dssp TSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCC-EEBCCSS--------SCC----------CCEE
T ss_pred CCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCe-EEEEeCC--------CCC----------eeEE
Confidence 456777777655443334332334578899996555444442 2 44 5555543 210 0111
Q ss_pred EEeecCCcCcEEEEEEccCCCEEEEEe-CCCeEEEEEcC
Q 046828 442 KLHRGMTSAVIQDICFSHYSQWIAIVS-SRGTCHIFVLT 479 (627)
Q Consensus 442 ~l~rG~t~a~I~sIaFSpDg~~Las~S-~dgTvhIw~i~ 479 (627)
+..+. ..-..|+|+|++++|..+. ..++|.+++++
T Consensus 535 -~~~~l--~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 535 -VTENI--QWPNGITLDLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp -SCSSC--SSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred -EeCCC--CCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence 11111 2357899999876665554 45678887775
No 287
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=78.24 E-value=97 Score=35.07 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=46.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEE
Q 046828 385 TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWI 464 (627)
Q Consensus 385 ~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~L 464 (627)
...|.+|..+++|++.+... .| +..||.. ++. ...+....|.....|.+|...++|+..
T Consensus 542 ~~~i~~i~~d~~g~lWigT~-~G--l~~~d~~-------~~~-----------~~~~~~~~gl~~~~i~~i~~d~~g~lW 600 (795)
T 4a2l_A 542 KLFTNCIYEASNGIIWVGTR-EG--FYCFNEK-------DKQ-----------IKRYNTTNGLPNNVVYGILEDSFGRLW 600 (795)
T ss_dssp GSCEEEEEECTTSCEEEEES-SC--EEEEETT-------TTE-----------EEEECGGGTCSCSCEEEEEECTTSCEE
T ss_pred CCeeEEEEECCCCCEEEEeC-CC--ceeECCC-------CCc-----------EEEeCCCCCCchhheEEEEECCCCCEE
Confidence 35699999999999776554 35 6778853 121 122333345555569999999999866
Q ss_pred EEEeCCCeEEEEEcC
Q 046828 465 AIVSSRGTCHIFVLT 479 (627)
Q Consensus 465 as~S~dgTvhIw~i~ 479 (627)
+++ .+ -+..|+..
T Consensus 601 i~t-~~-Gl~~~~~~ 613 (795)
T 4a2l_A 601 LST-NR-GISCFNPE 613 (795)
T ss_dssp EEE-TT-EEEEEETT
T ss_pred EEc-CC-ceEEEcCC
Confidence 555 44 45556543
No 288
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=77.92 E-value=67 Score=35.02 Aligned_cols=30 Identities=10% Similarity=-0.051 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
..-..|+|+|+|..|..+....+.|+.++.
T Consensus 310 ~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 310 SWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp SCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 345789999999988888877777777665
No 289
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=77.84 E-value=25 Score=34.90 Aligned_cols=102 Identities=7% Similarity=0.179 Sum_probs=67.4
Q ss_pred CCCCeEEEEECCCCeEEEEeccC-CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 362 DIAGMVVVKDIVSRSVISQFRAH-TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 362 ~~dG~V~IwD~~s~~~l~~~~aH-~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
..++.|...|+. ++.+..+.-. ......|++.++|.++++ ++.-..+.+|++... +.. .....
T Consensus 46 d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs-~E~~~~l~~~~v~~~------~~i--------~~~~~ 109 (255)
T 3qqz_A 46 NKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVIS-DERDYAIYVISLTPN------SEV--------KILKK 109 (255)
T ss_dssp ETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEE-ETTTTEEEEEEECTT------CCE--------EEEEE
T ss_pred CCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEE-ECCCCcEEEEEcCCC------Cee--------eeeee
Confidence 347889999998 7777777522 245788999999986655 544344788887521 100 00112
Q ss_pred EEEe--ecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 046828 441 YKLH--RGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 441 ~~l~--rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~ 479 (627)
.++. ....+...-.|+|+|+++.|.++..+....||.++
T Consensus 110 ~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 110 IKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp EECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred eccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 2221 11233447999999999999999998888888886
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=77.68 E-value=50 Score=34.17 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=24.1
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
-.+-|+|+|+|.+|+.+...|. +..||+.
T Consensus 186 G~nGIv~~pdg~~Liv~~~~g~-L~~fD~~ 214 (334)
T 2p9w_A 186 GYSGITFDPHSNKLIAFGGPRA-LTAFDVS 214 (334)
T ss_dssp SCSEEEEETTTTEEEEESSSSS-EEEEECS
T ss_pred CcceEEEeCCCCEEEEEcCCCe-EEEEcCC
Confidence 3678999999999999888777 6778875
No 291
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=77.45 E-value=5.6 Score=44.68 Aligned_cols=61 Identities=23% Similarity=0.390 Sum_probs=43.1
Q ss_pred eEEEEECCCCCEEEEEeCC----------CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEE
Q 046828 388 ISALCFDRSGTLLVTASIH----------GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICF 457 (627)
Q Consensus 388 Is~laFspdG~lLaTaS~d----------Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaF 457 (627)
.--|+|+|.|.+++.-+.+ |.. .+|-..|. +| .++++.++...+.+..++|
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn-~~~~~~~~-----~g-------------~~~rf~~~P~gaE~TG~~f 538 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNN-QMLCADPA-----TG-------------EIRRFMVGPIGCEVTGISF 538 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSC-EEEEECTT-----TC-------------CEEEEEECCTTCEEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccc-eEEEEeCC-----CC-------------eEEEEEeCCCCccCcCeeE
Confidence 3569999999987765543 221 34433322 23 5778888888889999999
Q ss_pred ccCCCEEEEE
Q 046828 458 SHYSQWIAIV 467 (627)
Q Consensus 458 SpDg~~Las~ 467 (627)
+||++.|.+.
T Consensus 539 spDg~tlfvn 548 (592)
T 3zwu_A 539 SPDQKTLFVG 548 (592)
T ss_dssp CTTSSEEEEE
T ss_pred CCCCCEEEEE
Confidence 9999888664
No 292
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=76.07 E-value=69 Score=32.25 Aligned_cols=174 Identities=11% Similarity=-0.005 Sum_probs=0.0
Q ss_pred cEEEEEECCCC--ceEEEEecCCeEEEEEecC--cEEEEE--eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccc
Q 046828 180 TAVRFYSLRSH--NYVHVLRFRSTVYMVRCSP--RIVAVG--LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 180 ~tV~lwdl~t~--~~V~tL~f~s~V~sV~~s~--~~LaV~--~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~ 253 (627)
..|+.+|+... +....+..-..+.+|++.. ..|-.+ ..++|+.+++.......++.......
T Consensus 13 ~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~------------ 80 (318)
T 3sov_A 13 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLS------------ 80 (318)
T ss_dssp EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSC------------
T ss_pred CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCC------------
Q ss_pred cceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeee
Q 046828 254 YGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYY 331 (627)
Q Consensus 254 ~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~ 331 (627)
..-+|+.+ +.|-++.
T Consensus 81 p~glavd~~~g~ly~~d--------------------------------------------------------------- 97 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTD--------------------------------------------------------------- 97 (318)
T ss_dssp CCEEEEETTTTEEEEEE---------------------------------------------------------------
T ss_pred ccEEEEEcCCCeEEEEE---------------------------------------------------------------
Q ss_pred ccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCC-CCEE
Q 046828 332 QDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIH-GNNI 410 (627)
Q Consensus 332 ~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~d-Gt~I 410 (627)
...+.|.++|+........+.........|+++|.+..|.-+... ...|
T Consensus 98 ------------------------------~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I 147 (318)
T 3sov_A 98 ------------------------------SETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI 147 (318)
T ss_dssp ------------------------------TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEE
T ss_pred ------------------------------CCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEE
Q ss_pred EEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEcc-CCCEEEEEeCCCeEEEEEcC
Q 046828 411 NIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSH-YSQWIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 411 ~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSp-Dg~~Las~S~dgTvhIw~i~ 479 (627)
..++.. |. ....-+..+.... ..|+|++ +++...+=+..+.|..++++
T Consensus 148 ~r~~~d--------G~-----------~~~~~~~~~l~~P--nglavd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 148 ERAGMD--------GS-----------SRFIIINSEIYWP--NGLTLDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp EEEETT--------SC-----------SCEEEECSSCSCE--EEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEcC--------CC-----------CeEEEEECCCCCc--cEEEEeccCCEEEEEECCCCEEEEEcCC
No 293
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=73.88 E-value=1.2e+02 Score=34.11 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=45.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE--eecCCcCcEEEEEEccCCC
Q 046828 385 TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL--HRGMTSAVIQDICFSHYSQ 462 (627)
Q Consensus 385 ~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l--~rG~t~a~I~sIaFSpDg~ 462 (627)
...|.+|..+++|++.+....+| +..||.. .+ .+..+ ..|.....|.+|...++|+
T Consensus 494 ~~~i~~i~~d~~g~lWigt~~~G--l~~~~~~-------~~-------------~~~~~~~~~~l~~~~i~~i~~d~~g~ 551 (781)
T 3v9f_A 494 ENFVRSIAQDSEGRFWIGTFGGG--VGIYTPD-------MQ-------------LVRKFNQYEGFCSNTINQIYRSSKGQ 551 (781)
T ss_dssp CSCEEEEEECTTCCEEEEESSSC--EEEECTT-------CC-------------EEEEECTTTTCSCSCEEEEEECTTSC
T ss_pred cceeEEEEEcCCCCEEEEEcCCC--EEEEeCC-------CC-------------eEEEccCCCCCCCCeeEEEEECCCCC
Confidence 35799999999999887655466 4667753 11 22222 2244344599999999998
Q ss_pred EEEEEeCCCeEEEEEcC
Q 046828 463 WIAIVSSRGTCHIFVLT 479 (627)
Q Consensus 463 ~Las~S~dgTvhIw~i~ 479 (627)
..+.+ .+|-+..|+..
T Consensus 552 lWi~T-~~Glv~~~d~~ 567 (781)
T 3v9f_A 552 MWLAT-GEGLVCFPSAR 567 (781)
T ss_dssp EEEEE-TTEEEEESCTT
T ss_pred EEEEE-CCCceEEECCC
Confidence 55544 46654666543
No 294
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=72.49 E-value=15 Score=41.14 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=60.3
Q ss_pred eEEEEECCCCe--EEEEec-cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 366 MVVVKDIVSRS--VISQFR-AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 366 ~V~IwD~~s~~--~l~~~~-aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.+.+||..+.+ .+..+. .+.....++++.++|++++.++.++..+.+||.. +.. | .+
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~-------t~~------W-------~~ 279 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS-------SDS------W-------IP 279 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGG-------GTE------E-------EE
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCc-------CCc------e-------eE
Confidence 58899998874 233332 3344456788999999999999666568999975 121 1 11
Q ss_pred EeecCCcCc-EEEEEEccCCCEEEEEe-CC-----CeEEEEEcCC
Q 046828 443 LHRGMTSAV-IQDICFSHYSQWIAIVS-SR-----GTCHIFVLTP 480 (627)
Q Consensus 443 l~rG~t~a~-I~sIaFSpDg~~Las~S-~d-----gTvhIw~i~~ 480 (627)
+ .-+..++ -..+++-+|++.+++++ .+ .++++|+...
T Consensus 280 ~-~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 280 G-PDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp C-CCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred C-CCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 1 1111111 13455668999999998 34 5789999864
No 295
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=68.91 E-value=12 Score=41.71 Aligned_cols=61 Identities=23% Similarity=0.390 Sum_probs=41.8
Q ss_pred eEEEEECCCCCEEEEEeCC----------CCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEE
Q 046828 388 ISALCFDRSGTLLVTASIH----------GNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICF 457 (627)
Q Consensus 388 Is~laFspdG~lLaTaS~d----------Gt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaF 457 (627)
...|+|+++|.+.+.-+.. |.. .||.+.|. +| .+.++..+...+.++.|+|
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn-~v~~~dp~-----tG-------------el~~fl~~P~~aEpnGiaf 538 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNN-QMLCADPA-----TG-------------EIRRFMVGPIGCEVTGISF 538 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSC-EEEEECTT-----TC-------------CEEEEEECCTTCEEEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCc-eEEEEeCC-----CC-------------eEEEEEeCCCCccccCCEE
Confidence 5679999999988843321 211 56665443 23 3555656655577999999
Q ss_pred ccCCCEEEEE
Q 046828 458 SHYSQWIAIV 467 (627)
Q Consensus 458 SpDg~~Las~ 467 (627)
|||++.|.+.
T Consensus 539 SPD~ktLfV~ 548 (592)
T 4a9v_A 539 SPDQKTLFVG 548 (592)
T ss_dssp CTTSSEEEEE
T ss_pred CCCCCEEEEE
Confidence 9999998876
No 296
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=67.68 E-value=92 Score=30.14 Aligned_cols=50 Identities=10% Similarity=0.067 Sum_probs=28.1
Q ss_pred cEEEEEECCCCc---eEEEEecCC---eEEEEEecCcEEEEEe------CCeEEEEeCCCCc
Q 046828 180 TAVRFYSLRSHN---YVHVLRFRS---TVYMVRCSPRIVAVGL------AAQIYCFDALTLE 229 (627)
Q Consensus 180 ~tV~lwdl~t~~---~V~tL~f~s---~V~sV~~s~~~LaV~~------~~~I~i~D~~t~e 229 (627)
+.|.+||+.+.+ ....-..+. .-..+.+..++++.|. ...+++||+.+.+
T Consensus 78 ~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 78 SSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp CCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 558999999887 433222221 1223334556666653 2357888877654
No 297
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=67.11 E-value=1.7e+02 Score=32.96 Aligned_cols=72 Identities=11% Similarity=0.222 Sum_probs=45.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEE
Q 046828 385 TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWI 464 (627)
Q Consensus 385 ~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~L 464 (627)
...|.+|..+++|.+.+... +| +|..||.. ++. ...+....|.....|.+|...++|+..
T Consensus 538 ~~~i~~i~~d~~g~lWi~T~-~G-lv~~~d~~-------~~~-----------~~~~~~~~gl~~~~i~~i~~d~~g~lW 597 (781)
T 3v9f_A 538 SNTINQIYRSSKGQMWLATG-EG-LVCFPSAR-------NFD-----------YQVFQRKEGLPNTHIRAISEDKNGNIW 597 (781)
T ss_dssp CSCEEEEEECTTSCEEEEET-TE-EEEESCTT-------TCC-----------CEEECGGGTCSCCCCCEEEECSSSCEE
T ss_pred CCeeEEEEECCCCCEEEEEC-CC-ceEEECCC-------CCc-----------EEEccccCCCCCceEEEEEECCCCCEE
Confidence 34689999999999877655 66 23677753 221 133443445555568999999998765
Q ss_pred EEEeCCCeEEEEEc
Q 046828 465 AIVSSRGTCHIFVL 478 (627)
Q Consensus 465 as~S~dgTvhIw~i 478 (627)
++ +.+| +..|+.
T Consensus 598 ~~-t~~G-l~~~~~ 609 (781)
T 3v9f_A 598 AS-TNTG-ISCYIT 609 (781)
T ss_dssp EE-CSSC-EEEEET
T ss_pred EE-cCCc-eEEEEC
Confidence 44 4566 444543
No 298
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=67.06 E-value=1e+02 Score=30.38 Aligned_cols=73 Identities=16% Similarity=0.239 Sum_probs=49.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCc-----CcEEEEEEccC
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTS-----AVIQDICFSHY 460 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~-----a~I~sIaFSpD 460 (627)
..+++|+|+|.-..|..-|.....+-++|.. |. ....+.|.+|... ..--.|+|.++
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--------g~----------~~~~~~L~~g~~~l~~~~~qpEGia~d~~ 234 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLV--------GE----------VIGEMSLTKGSRGLSHNIKQAEGVAMDAS 234 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTT--------CC----------EEEEEECSTTGGGCSSCCCSEEEEEECTT
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCC--------CC----------EEEEEEcCCccCCcccccCCCCeeEECCC
Confidence 4579999999755555556666667788753 31 2456667665321 23689999999
Q ss_pred CCEEEEEeCCCeEEEEE
Q 046828 461 SQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 461 g~~Las~S~dgTvhIw~ 477 (627)
|+ |.++|...-+.+|.
T Consensus 235 G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 235 GN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp CC-EEEEETTTEEEEEE
T ss_pred CC-EEEEcCCceEEEEE
Confidence 98 66668888666664
No 299
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=65.47 E-value=1.3e+02 Score=30.98 Aligned_cols=52 Identities=10% Similarity=-0.038 Sum_probs=32.2
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
+.|..+|+........+...-..-..|+|+|++..|..+......|..+|+.
T Consensus 225 ~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 225 PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp CEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred CEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 4555555543322222222233468899999888888887776667888864
No 300
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=64.97 E-value=49 Score=40.07 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=60.3
Q ss_pred CeEEEEECCCCeEEEEeccC-CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE
Q 046828 365 GMVVVKDIVSRSVISQFRAH-TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL 443 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH-~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l 443 (627)
..|++.|....+.+..++.. ...|.+.+.+. ..++.++ .|. +.+|++. .+ .+.+.
T Consensus 492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~-l~~fel~-------~~-------------~L~~~ 547 (1158)
T 3ei3_A 492 ASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRA-LYYLQIH-------PQ-------------ELRQI 547 (1158)
T ss_dssp SCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTE-EEEEEEE-------TT-------------EEEEE
T ss_pred CEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCE-EEEEEee-------CC-------------ceeee
Confidence 44667777666666666643 34677777664 4666665 444 6788875 12 12222
Q ss_pred eecCCcCcEEEEEEccC------CCEEEEEeC-CCeEEEEEcCCC
Q 046828 444 HRGMTSAVIQDICFSHY------SQWIAIVSS-RGTCHIFVLTPF 481 (627)
Q Consensus 444 ~rG~t~a~I~sIaFSpD------g~~Las~S~-dgTvhIw~i~~~ 481 (627)
.+-.-...|.++++.+. ++++|++.. |+|++|+.+...
T Consensus 548 ~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l 592 (1158)
T 3ei3_A 548 SHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF 592 (1158)
T ss_dssp EEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred cccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence 12112346999999863 579999996 999999999754
No 301
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=59.00 E-value=44 Score=36.00 Aligned_cols=85 Identities=22% Similarity=0.324 Sum_probs=53.7
Q ss_pred CCCCeEEEEECCC---CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEee--cCCc--CcEEEEE
Q 046828 384 HTSPISALCFDRS---GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHR--GMTS--AVIQDIC 456 (627)
Q Consensus 384 H~~~Is~laFspd---G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~r--G~t~--a~I~sIa 456 (627)
...+|..+-|+|- |..|++=-.|++ ||+||+..... . + .-+.+... |... ..|.+++
T Consensus 123 ~~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~s~~-----~-------P---~~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 123 PKSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILNSQE-----K-------P---IVLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp CCCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTCTTS-----C-------C---EEESCCCSEEESCSSCCCEEEEE
T ss_pred CCCceeEEEeccccCCCCeEEEEecCCE-EEEEEcccCCC-----C-------C---cchhccccccCCCcccceEEEEE
Confidence 3578999999996 457888888988 89999963110 0 0 00101101 2211 3499999
Q ss_pred EccCCCEEEEEeCCCeEEEEEcCCCCCe
Q 046828 457 FSHYSQWIAIVSSRGTCHIFVLTPFGGE 484 (627)
Q Consensus 457 FSpDg~~Las~S~dgTvhIw~i~~~gg~ 484 (627)
|+.++--|-+.+....-.||.+.|+-..
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAlcP~LP~ 214 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAFYPFLPS 214 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEESSCCCS
T ss_pred EcCCCcEEEEEecCCCCCEEEECCCCcc
Confidence 9999987777663333356788877543
No 302
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=58.79 E-value=1.1e+02 Score=32.08 Aligned_cols=106 Identities=9% Similarity=0.140 Sum_probs=63.9
Q ss_pred CCeEEEEECCCC--eEEEEeccC------CCCeEEEEEC---CC----CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCc
Q 046828 364 AGMVVVKDIVSR--SVISQFRAH------TSPISALCFD---RS----GTLLVTASIHGNNINIFRIMPSSSKGRSGSAS 428 (627)
Q Consensus 364 dG~V~IwD~~s~--~~l~~~~aH------~~~Is~laFs---pd----G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~ 428 (627)
.-.|.+||+.+. +.++++.-. .+-+..|+++ |+ +.+...++..+.-|.|+|+. +|..-
T Consensus 122 ~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~-------~~~sw 194 (381)
T 3q6k_A 122 RPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHK-------KQDSW 194 (381)
T ss_dssp CCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETT-------TTEEE
T ss_pred CceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECC-------CCcEE
Confidence 457999999999 888776532 3458889998 32 45666666555568899986 22110
Q ss_pred c----ccCCCCceeEEEEEeecCC---cCcEEEEEEccC----CCEEEEEeCCCeEEEEEcCC
Q 046828 429 Q----TYDWTSSHVHLYKLHRGMT---SAVIQDICFSHY----SQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 429 ~----~~~~~~~~~~l~~l~rG~t---~a~I~sIaFSpD----g~~Las~S~dgTvhIw~i~~ 480 (627)
+ +..+. . .-.+.. .|.. ...|..|++||| +++|.-....++ ++|.+..
T Consensus 195 Rv~~~~~~pd-~-~~~~~i-~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T 253 (381)
T 3q6k_A 195 NVTHPTFKAE-R-PTKFDY-GGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNT 253 (381)
T ss_dssp EEECGGGSCC-S-CEEEEE-TTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEH
T ss_pred EEccCCCccc-c-CcceEE-CCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEH
Confidence 0 00000 0 000000 1111 124899999998 889988877765 6777753
No 303
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=58.39 E-value=30 Score=36.77 Aligned_cols=73 Identities=11% Similarity=0.085 Sum_probs=44.2
Q ss_pred eEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEE-eecCCcCcEEEEEEccCCCEEE
Q 046828 388 ISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKL-HRGMTSAVIQDICFSHYSQWIA 465 (627)
Q Consensus 388 Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l-~rG~t~a~I~sIaFSpDg~~La 465 (627)
...++++| +|.+.++-..++. |+.||.. +|. ....+ ..+.. ..-..|+|+||+++|.
T Consensus 230 P~giavd~~~G~lyv~d~~~~~-V~~~d~~-------~g~------------~~~~~~~~~~~-~~~~~ia~dpdG~~LY 288 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYHHAM-ISSYDPA-------TGT------------LTEEEVMMDTK-GSNFHIVWHPTGDWAY 288 (433)
T ss_dssp BCCCEECTTTCCEEECBTTCSE-EEEECTT-------TCC------------EEEEEEECSCC-SSCEEEEECTTSSEEE
T ss_pred CCEEEEeCCCCeEEEEECCCCE-EEEEECC-------CCe------------EEEEEeccCCC-CCcccEEEeCCCCEEE
Confidence 45688999 7777666555554 6777653 231 11122 12221 2235799999999665
Q ss_pred EEe-CCCeEEEEEcCCC
Q 046828 466 IVS-SRGTCHIFVLTPF 481 (627)
Q Consensus 466 s~S-~dgTvhIw~i~~~ 481 (627)
++. ..+.|+.++.+..
T Consensus 289 vad~~~~~I~~~~~d~~ 305 (433)
T 4hw6_A 289 IIYNGKHCIYRVDYNRE 305 (433)
T ss_dssp EEETTTTEEEEEEBCTT
T ss_pred EEeCCCCEEEEEeCCCC
Confidence 554 5678888887643
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=52.12 E-value=57 Score=33.43 Aligned_cols=93 Identities=15% Similarity=0.088 Sum_probs=46.8
Q ss_pred CCCeEEEEECCCCe-EEEEec---cCCCCeEEEEECCC----CCEEEEEeC---CC---CEEEEEeCCCCCCCCCCCCCc
Q 046828 363 IAGMVVVKDIVSRS-VISQFR---AHTSPISALCFDRS----GTLLVTASI---HG---NNINIFRIMPSSSKGRSGSAS 428 (627)
Q Consensus 363 ~dG~V~IwD~~s~~-~l~~~~---aH~~~Is~laFspd----G~lLaTaS~---dG---t~I~Vwdi~p~~~~~~~g~~~ 428 (627)
.+|.|.++|. .++ .+..+. .-......|+|+|+ |.+.++-+. ++ ..|..|+.... .+.
T Consensus 47 ~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~-----~~~-- 118 (354)
T 3a9g_A 47 RPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGS-----TFK-- 118 (354)
T ss_dssp TTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSS-----SCC--
T ss_pred CCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCC-----CcC--
Confidence 4488888873 443 333332 11345789999997 666665542 21 22445554310 000
Q ss_pred cccCCCCceeEEEE-EeecCCcCcEEEEEEccCCCEEEEEeC
Q 046828 429 QTYDWTSSHVHLYK-LHRGMTSAVIQDICFSHYSQWIAIVSS 469 (627)
Q Consensus 429 ~~~~~~~~~~~l~~-l~rG~t~a~I~sIaFSpDg~~Las~S~ 469 (627)
+. ....++. +..+. .+.-..|+|.|||+..++.++
T Consensus 119 ----~~-~~~~l~~~~~~~~-~h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 119 ----LK-EVKTLIDGIPGAY-IHNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp ----EE-EEEEEEEEEECCS-SCCCCCEEECTTSCEEEECCC
T ss_pred ----cC-ccEEEEEcCCCCC-CcCCceEEECCCCcEEEEECC
Confidence 00 0112222 22111 122467999999986666444
No 305
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=51.76 E-value=2.8e+02 Score=30.65 Aligned_cols=179 Identities=12% Similarity=-0.037 Sum_probs=0.0
Q ss_pred cEEEEEECCCC--ceEEEEecCCeEEEEEecC--cEEEEE--eCCeEEEEeCCCCceeEEEEcCCCCCCCCCCCcCcccc
Q 046828 180 TAVRFYSLRSH--NYVHVLRFRSTVYMVRCSP--RIVAVG--LAAQIYCFDALTLESKFSVLTYPVPHFGGQGTSGVNIG 253 (627)
Q Consensus 180 ~tV~lwdl~t~--~~V~tL~f~s~V~sV~~s~--~~LaV~--~~~~I~i~D~~t~e~~~tl~~~p~~~~~~~g~~~~~~~ 253 (627)
+.|+..|+... +....+.--..+..|++.. ..|.++ ..++|+.+++.......++.......
T Consensus 18 ~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~------------ 85 (619)
T 3s94_A 18 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLS------------ 85 (619)
T ss_dssp SBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSC------------
T ss_pred ccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCC------------
Q ss_pred cceeeEcC--ceEEEcCCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhhcceeecCCcceeEEeeee
Q 046828 254 YGPMAVGP--RWLAYASNNPLLPNTGRLSPQSLTPPSVSPSTSPSNGNLMARYAVESSKQLAAGLINLGDMGYKTLSRYY 331 (627)
Q Consensus 254 ~~~iAl~~--r~LAy~~~~~~v~~~gr~~~q~~t~~~~s~~~s~s~gs~v~~~a~~~~k~l~~gl~~lg~~g~~~~s~y~ 331 (627)
..-+|++. +.|-++.
T Consensus 86 P~GlAvD~~~~~ly~~d--------------------------------------------------------------- 102 (619)
T 3s94_A 86 PDGLACDWLGEKLYWTD--------------------------------------------------------------- 102 (619)
T ss_dssp EEEEEEETTTTEEEEEE---------------------------------------------------------------
T ss_pred cCeEEEEecCCEEEEEe---------------------------------------------------------------
Q ss_pred ccccCCCCCCCccCCCccccCcccccccCCCCCCeEEEEECCCCeEEEEeccCCCCeEEEEECCC-CCEEEEEeCCCCEE
Q 046828 332 QDFIPDGSSSPVSSNSSWKAGRNASHSSDTDIAGMVVVKDIVSRSVISQFRAHTSPISALCFDRS-GTLLVTASIHGNNI 410 (627)
Q Consensus 332 ~~~~p~g~~~~~s~~~~~~~g~~~~~~~~~~~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspd-G~lLaTaS~dGt~I 410 (627)
...+.|.+.|+........+...-.....|+++|. |.+..|--.+...|
T Consensus 103 ------------------------------~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I 152 (619)
T 3s94_A 103 ------------------------------SETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI 152 (619)
T ss_dssp ------------------------------TTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEE
T ss_pred ------------------------------CCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEE
Q ss_pred EEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCee
Q 046828 411 NIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGET 485 (627)
Q Consensus 411 ~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~ 485 (627)
...++. | ...+..-...-.....|+++++++.|..+ +.+.-+||.++..|...
T Consensus 153 ~r~~~d--------G-------------~~~~~l~~~~~~~P~Glald~~~~~LY~a-D~~~~~I~~~~~dG~~~ 205 (619)
T 3s94_A 153 ERAGMD--------G-------------SSRFIIINSEIYWPNGLTLDYEEQKLYWA-DAKLNFIHKSNLDGTNR 205 (619)
T ss_dssp EEEETT--------S-------------CSCEEEECSSCSSEEEEEEETTTTEEEEE-ETTTCCEEEESSSCCEE
T ss_pred EEEECC--------C-------------CceEEEEeCCCCCCcEEEEEccCCEEEEE-eCCCCeEEEecCCCCcc
No 306
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=51.14 E-value=1.8e+02 Score=28.12 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=28.9
Q ss_pred cEEEEEECCCCceEEEEecCC---eEEEEEecCcEEEEEeC-------CeEEEEeCCCCc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS---TVYMVRCSPRIVAVGLA-------AQIYCFDALTLE 229 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s---~V~sV~~s~~~LaV~~~-------~~I~i~D~~t~e 229 (627)
+.+.+||+.+++....-..+. .-..+.+..++++.|.. ..+++||..+.+
T Consensus 70 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 70 KRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp CEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred ceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 679999999987644333332 12233345566665532 237777777654
No 307
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=49.97 E-value=68 Score=32.69 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=41.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEe---ecCCcCcEEEEEEccC---
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLH---RGMTSAVIQDICFSHY--- 460 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~---rG~t~a~I~sIaFSpD--- 460 (627)
.-..|+|.|||+++++ ...|+ |++++ . |. ...+..+. .| ......|+|+||
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~-I~~i~-~--------g~----------~~~~~~~~v~~~g--~~~p~gia~~pdf~~ 88 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGR-IRLFR-E--------GR----------LSTYAELSVYHRG--ESGLLGLALHPRFPQ 88 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTE-EEEEE-T--------TE----------EEEEEECCCCCST--TCSEEEEEECTTTTT
T ss_pred CceEEEEcCCCeEEEE-eCCCe-EEEEE-C--------CC----------ccEeecceEeecC--CCCceeEEECCCCCC
Confidence 4568999999997766 45576 67776 2 11 01122221 12 123789999999
Q ss_pred CCEEEEEeCC------CeEEEEEcC
Q 046828 461 SQWIAIVSSR------GTCHIFVLT 479 (627)
Q Consensus 461 g~~Las~S~d------gTvhIw~i~ 479 (627)
+.+|.++... +.|..|++.
T Consensus 89 ~g~lYv~~~~~~~~~~~~v~r~~~~ 113 (352)
T 2ism_A 89 EPYVYAYRTVAEGGLRNQVVRLRHL 113 (352)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEEEC
T ss_pred CCEEEEEEecCCCCCccEEEEEEeC
Confidence 6666555432 456666654
No 308
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=49.90 E-value=1.9e+02 Score=28.10 Aligned_cols=50 Identities=12% Similarity=0.259 Sum_probs=27.2
Q ss_pred cEEEEEECCCCceEEEEecCCe---EEEEEecCcEEEEEeC----------CeEEEEeCCCCc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRST---VYMVRCSPRIVAVGLA----------AQIYCFDALTLE 229 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~---V~sV~~s~~~LaV~~~----------~~I~i~D~~t~e 229 (627)
+.+.+||+.+++....-.++.+ -..+.+..++++.|.. ..+++||+.+.+
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 4589999998875432222221 1223334555555432 247777777653
No 309
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=48.42 E-value=90 Score=33.29 Aligned_cols=64 Identities=17% Similarity=0.194 Sum_probs=36.2
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecC----CcCcEEEEEEccC--
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGM----TSAVIQDICFSHY-- 460 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~----t~a~I~sIaFSpD-- 460 (627)
....|+|.|+|++|++-...|. |++++.. .|. ...+..+.... ...-..+|+|+||
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~-I~~~~~~-------~g~----------~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~ 89 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGK-ILRVNPE-------SGS----------VKTVFQVPEIVNDADGQNGLLGFAFHPDFK 89 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCE-EEEECTT-------TCC----------EEEEEECTTCCCCTTSSCSEEEEEECTTTT
T ss_pred CceEEEEcCCCcEEEEEcCCCE-EEEEECC-------CCc----------EeEEecCCccccccCCCCceeEEEECCCcC
Confidence 4568999999998887544334 5555532 121 01222332211 1123779999996
Q ss_pred -CCEEEEEe
Q 046828 461 -SQWIAIVS 468 (627)
Q Consensus 461 -g~~Las~S 468 (627)
..+|.++.
T Consensus 90 ~~g~lYv~~ 98 (454)
T 1cru_A 90 NNPYIYISG 98 (454)
T ss_dssp TSCEEEEEE
T ss_pred cCCEEEEEE
Confidence 66665554
No 310
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=48.16 E-value=83 Score=32.01 Aligned_cols=91 Identities=8% Similarity=0.021 Sum_probs=45.6
Q ss_pred CCCeEEEEECCCCe--EEEEec---cCCCCeEEEEECCC----CCEEEEEeCCC----CEEEEEeCCCCCCCCCCCCCcc
Q 046828 363 IAGMVVVKDIVSRS--VISQFR---AHTSPISALCFDRS----GTLLVTASIHG----NNINIFRIMPSSSKGRSGSASQ 429 (627)
Q Consensus 363 ~dG~V~IwD~~s~~--~l~~~~---aH~~~Is~laFspd----G~lLaTaS~dG----t~I~Vwdi~p~~~~~~~g~~~~ 429 (627)
..|.|.++| .++ .+..+. .-......|+|+|+ |.+.++-+..+ ..|..|+.. .+.
T Consensus 49 ~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~-------~~~--- 116 (352)
T 2ism_A 49 RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHL-------GER--- 116 (352)
T ss_dssp TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEEC-------SSC---
T ss_pred CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeC-------CCC---
Confidence 348888888 333 233332 11345789999998 55555544321 235556653 110
Q ss_pred ccCCCCceeEEEE-Eee-cCCcCcEEEEEEccCCCEEEEEeC
Q 046828 430 TYDWTSSHVHLYK-LHR-GMTSAVIQDICFSHYSQWIAIVSS 469 (627)
Q Consensus 430 ~~~~~~~~~~l~~-l~r-G~t~a~I~sIaFSpDg~~Las~S~ 469 (627)
+. ....+.+ +.. ....+....|+|.|||...++.++
T Consensus 117 ---~~-~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~ 154 (352)
T 2ism_A 117 ---GV-LDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGE 154 (352)
T ss_dssp ---EE-EEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCC
T ss_pred ---cC-ceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECC
Confidence 00 0112222 221 111112468999999965555443
No 311
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=47.98 E-value=2e+02 Score=27.88 Aligned_cols=50 Identities=14% Similarity=0.132 Sum_probs=26.5
Q ss_pred cEEEEEECCCCceEEEEecCC---eEEEEEecCcEEEEEe------CCeEEEEeCCCCc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS---TVYMVRCSPRIVAVGL------AAQIYCFDALTLE 229 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s---~V~sV~~s~~~LaV~~------~~~I~i~D~~t~e 229 (627)
+.+.+||+.+.+....-..+. .-..+.+..+++++|. ...+++||..+.+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDE 148 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCe
Confidence 458899998886433212221 1122334455555543 1347777776653
No 312
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=46.18 E-value=2.1e+02 Score=27.48 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=27.8
Q ss_pred cEEEEEECCCCceEEEEecCC---eEEEEEecCcEEEEEeC------CeEEEEeCCCCc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS---TVYMVRCSPRIVAVGLA------AQIYCFDALTLE 229 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s---~V~sV~~s~~~LaV~~~------~~I~i~D~~t~e 229 (627)
..+..||+.+++....-..+. .-..+.+..++++.|.. ..+++||..+.+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCC
Confidence 458899999887533222222 11223344556665531 247788877765
No 313
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=45.73 E-value=80 Score=32.77 Aligned_cols=50 Identities=8% Similarity=0.066 Sum_probs=33.5
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
.|.|.-+|...-+ .+...-.--+.|+|||||+.|..+......|.+|++.
T Consensus 202 ~g~vyr~d~~~~~---~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 202 WSFVTYYSPNDVR---VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp CEEEEEECTTCCE---EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred ccEEEEEECCeEE---EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 4556666654222 2222223458899999999888888766668999985
No 314
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=45.52 E-value=2.1e+02 Score=27.45 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=28.8
Q ss_pred cEEEEEECCCCceEEEEecCC---eEEEEEecCcEEEEEe-C-----CeEEEEeCCCCc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS---TVYMVRCSPRIVAVGL-A-----AQIYCFDALTLE 229 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s---~V~sV~~s~~~LaV~~-~-----~~I~i~D~~t~e 229 (627)
+.+.+||+++.+....-..+. .-..+.+..+++++|. . ..+++||+.+.+
T Consensus 77 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 77 RTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred cceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence 458899999887543322222 2223344566666664 2 247788877654
No 315
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=44.40 E-value=2e+02 Score=29.59 Aligned_cols=30 Identities=20% Similarity=0.112 Sum_probs=22.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCEEEEEeC
Q 046828 385 TSPISALCFDRSGTLLVTASIHGNNINIFRI 415 (627)
Q Consensus 385 ~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi 415 (627)
-..-..|+|.|||++|++--..|+ |++++.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~-I~~v~~ 60 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEAT-ITRVDA 60 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCE-EEEECT
T ss_pred CCCceEEEEcCCCcEEEEEecCCE-EEEEEC
Confidence 345678999999999888765787 566653
No 316
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=43.54 E-value=1.3e+02 Score=30.04 Aligned_cols=72 Identities=11% Similarity=0.091 Sum_probs=45.0
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCC
Q 046828 383 AHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQ 462 (627)
Q Consensus 383 aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~ 462 (627)
.+...+..++|+|+|++++.+ .+|.+++-+|-. |. .+... ..+. ...+.+++++++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~g--------G~----------tW~~~--~~~~-~~~~~~~~~~~~g~ 217 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEPG--------QT----------AWEPH--NRTT-SRRLHNMGFTPDGR 217 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEE-TTSSEEEEECTT--------CS----------SCEEE--ECCS-SSCEEEEEECTTSC
T ss_pred CCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCCC--------CC----------ceeEC--CCCC-CCccceeEECCCCC
Confidence 344578899999999988766 456655444420 11 02222 2232 34589999999998
Q ss_pred EEEEEeCCCeEEEEE
Q 046828 463 WIAIVSSRGTCHIFV 477 (627)
Q Consensus 463 ~Las~S~dgTvhIw~ 477 (627)
.++ ++.+|.+.+..
T Consensus 218 ~~~-~~~~G~~~~s~ 231 (327)
T 2xbg_A 218 LWM-IVNGGKIAFSD 231 (327)
T ss_dssp EEE-EETTTEEEEEE
T ss_pred EEE-EeCCceEEEec
Confidence 764 45678776553
No 317
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=42.88 E-value=3e+02 Score=28.34 Aligned_cols=51 Identities=8% Similarity=-0.015 Sum_probs=32.7
Q ss_pred eEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 366 MVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 366 ~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
.|...|+........+...-.....|+|+|++..|..+......|..+|+.
T Consensus 226 ~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 226 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp CEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 455555543322222222234568899999998888888777778888874
No 318
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=42.71 E-value=3.9e+02 Score=29.61 Aligned_cols=95 Identities=8% Similarity=-0.003 Sum_probs=51.2
Q ss_pred CCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 364 AGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASI-HGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 364 dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~-dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
.+.|.+.|+........+...-.....|+++|....|.-+.. +...|..+++. |. ....
T Consensus 101 ~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d--------G~------------~~~~ 160 (628)
T 4a0p_A 101 TNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD--------GS------------ERTT 160 (628)
T ss_dssp TTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC------------SCEE
T ss_pred CCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC--------CC------------ceEE
Confidence 356666666543322222233344689999995444444442 12224555542 21 0111
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeC-CCeEEEEEcCC
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSS-RGTCHIFVLTP 480 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~-dgTvhIw~i~~ 480 (627)
+..+. .....|+++++++.|..+.. .++|..++++-
T Consensus 161 l~~~~--~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 161 LVPNV--GRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp EECSC--SSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EECCC--CCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence 22232 24789999998887776654 45777777653
No 319
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=41.65 E-value=1e+02 Score=31.51 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=19.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEe
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFR 414 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwd 414 (627)
.....|+|.|||+++++ ..+|+ |++++
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~-I~~~d 55 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGR-LVLIS 55 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTE-EEEEC
T ss_pred CCCeEEEEcCCCeEEEE-eCCCE-EEEEe
Confidence 34578999999997766 44576 56666
No 320
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=41.18 E-value=4.6e+02 Score=30.05 Aligned_cols=52 Identities=8% Similarity=-0.011 Sum_probs=34.3
Q ss_pred CeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 365 GMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 365 G~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
+.|.+.++........+.........|++++.+..|..+......|.++++.
T Consensus 537 ~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 537 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp CEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence 4566666654333333333335678999999888888888776667888864
No 321
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=41.05 E-value=2.6e+02 Score=27.13 Aligned_cols=50 Identities=14% Similarity=0.229 Sum_probs=27.3
Q ss_pred cEEEEEECCCCceEEEEecCCeE---EEEEecCcEEEEEeC---------CeEEEEeCCCCc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRSTV---YMVRCSPRIVAVGLA---------AQIYCFDALTLE 229 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s~V---~sV~~s~~~LaV~~~---------~~I~i~D~~t~e 229 (627)
..+..||+.+++....-..+.+- ..+.+..++++.|.. ..+++||..+.+
T Consensus 67 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~ 128 (315)
T 4asc_A 67 AYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFK 128 (315)
T ss_dssp EEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTE
T ss_pred cceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCc
Confidence 45889999988753321222211 223344566665541 237788877653
No 322
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=39.22 E-value=1.1e+02 Score=33.46 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=41.2
Q ss_pred CeEEEEECC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCC--cCcEEEEEE------
Q 046828 387 PISALCFDR-SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMT--SAVIQDICF------ 457 (627)
Q Consensus 387 ~Is~laFsp-dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t--~a~I~sIaF------ 457 (627)
.-..|+|+| ++..|..+...+..|+++|.. .+ .+..+...-+ ......|+|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~-------~~-------------~v~~l~~~~~~~~~~p~~ia~~~~~~~ 199 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLK-------NR-------------MLSSPLNINTIPTNRIRSIAFNKKIEG 199 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETT-------TT-------------EEEEEECCTTSSCSBEEEEEECCCBTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECC-------CC-------------EEEEEEccCccccCCCcEEEEeecccc
Confidence 357899999 344455555544457778865 22 3444433211 124899999
Q ss_pred -ccCCCEEEEEeCCC
Q 046828 458 -SHYSQWIAIVSSRG 471 (627)
Q Consensus 458 -SpDg~~Las~S~dg 471 (627)
++++++|.++...+
T Consensus 200 ~d~~G~~lyvad~~~ 214 (496)
T 3kya_A 200 YADEAEYMIVAIDYD 214 (496)
T ss_dssp TBCTTCEEEEEECCC
T ss_pred cCCCCCEEEEEeCCC
Confidence 99999888887765
No 323
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=38.24 E-value=3.2e+02 Score=27.39 Aligned_cols=31 Identities=13% Similarity=0.005 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
..-..|+|+|++..|..+......|..+|+.
T Consensus 203 ~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 203 FWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 3468899999888888887776668888864
No 324
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=30.16 E-value=4.2e+02 Score=26.26 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=40.8
Q ss_pred EECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCC
Q 046828 392 CFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRG 471 (627)
Q Consensus 392 aFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dg 471 (627)
.+.|+|..|+-.+..+. .+|+.+... |. ....| +...+ ..|+|++++|.-+++.+
T Consensus 190 ~~~P~g~~iy~t~~~~~-~~I~~~~ld------G~------------~~~~L----t~~~~--~~~~~~g~~Iy~~~~~~ 244 (302)
T 3s25_A 190 PVVLDDTNVYYMDVNRD-NAIVHVNIN------NP------------NPVVL----TEANI--EHYNVYGSLIFYQRGGD 244 (302)
T ss_dssp EEEEETTEEEEEEGGGT-TEEEEECSS------SC------------CCEEC----SCSCE--EEEEEETTEEEEEECSS
T ss_pred eeeecCCEEEEEEcCCC-cEEEEEECC------CC------------CeEEE----eCCCc--ceEEECCCEEEEEECCC
Confidence 46799999988765433 356655322 21 11222 12224 34889999998776655
Q ss_pred eEEEEEcCCCCC
Q 046828 472 TCHIFVLTPFGG 483 (627)
Q Consensus 472 TvhIw~i~~~gg 483 (627)
.-+|+.++..|.
T Consensus 245 ~~~i~~~~~DG~ 256 (302)
T 3s25_A 245 NPALCVVKNDGT 256 (302)
T ss_dssp SCEEEEEETTSC
T ss_pred CcEEEEEECCCC
Confidence 567888876664
No 325
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=29.87 E-value=4e+02 Score=28.10 Aligned_cols=20 Identities=0% Similarity=-0.037 Sum_probs=15.9
Q ss_pred cEEEEEEccCCCEEEEEeCC
Q 046828 451 VIQDICFSHYSQWIAIVSSR 470 (627)
Q Consensus 451 ~I~sIaFSpDg~~Las~S~d 470 (627)
....|+|.|||++.++.++.
T Consensus 145 ~~~~l~f~pDG~Lyv~~Gd~ 164 (454)
T 1cru_A 145 QSGRLVIGPDQKIYYTIGDQ 164 (454)
T ss_dssp CEEEEEECTTSCEEEEECCT
T ss_pred CCCeEeECCCCeEEEEECCC
Confidence 47999999999877776553
No 326
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=29.03 E-value=1.7e+02 Score=29.18 Aligned_cols=93 Identities=5% Similarity=-0.082 Sum_probs=55.0
Q ss_pred CCCeEEEEECCCCeEEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEE
Q 046828 363 IAGMVVVKDIVSRSVISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYK 442 (627)
Q Consensus 363 ~dG~V~IwD~~s~~~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~ 442 (627)
....|...++.... ...+..+.. ++|+|+|+.|.-.+.....|.+-++. |. ...+
T Consensus 127 ~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~--------g~------------~~~~ 181 (302)
T 3s25_A 127 TATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTA--------SQ------------SEAL 181 (302)
T ss_dssp SCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETT--------TT------------EEEE
T ss_pred CCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECC--------CC------------CEEE
Confidence 34566667776433 334444432 56789999999777632335555543 21 1222
Q ss_pred EeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCCCCCee
Q 046828 443 LHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTPFGGET 485 (627)
Q Consensus 443 l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~~gg~~ 485 (627)
+..|. . .+.+.|++++|+-....+.-+|+.+...|...
T Consensus 182 l~~~~----~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~ 219 (302)
T 3s25_A 182 FYDCN----C-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNP 219 (302)
T ss_dssp EECSC----E-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCC
T ss_pred EeCCC----c-cceeeecCCEEEEEEcCCCcEEEEEECCCCCe
Confidence 33332 1 23467999999988765547888888776554
No 327
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=28.42 E-value=3.9e+02 Score=27.38 Aligned_cols=111 Identities=12% Similarity=0.143 Sum_probs=55.5
Q ss_pred CCeEEEEECCCCeE--EEEec----cCCCCeEEEEECCC----CCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCC
Q 046828 364 AGMVVVKDIVSRSV--ISQFR----AHTSPISALCFDRS----GTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDW 433 (627)
Q Consensus 364 dG~V~IwD~~s~~~--l~~~~----aH~~~Is~laFspd----G~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~ 433 (627)
.|.|++++...++. +..+. ....-...|+|+|+ |.+.++-+.... -+|+...... +... ....
T Consensus 52 ~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~-~~v~R~~~~~-----~~~~-~~~~ 124 (347)
T 3das_A 52 EATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD-NRIVRMLYDE-----KKPS-GEQL 124 (347)
T ss_dssp TCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS-EEEEEEEBCT-----TSCT-TCCB
T ss_pred CCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC-CEEEEEEeCC-----CCcc-cccC
Confidence 78888888765543 33231 22345788999995 766665332222 1444442211 0000 0011
Q ss_pred CCceeEEEE-EeecCCcCcEEEEEEccCCCEEEEEeCCC-----------eEEEEEcCCCCC
Q 046828 434 TSSHVHLYK-LHRGMTSAVIQDICFSHYSQWIAIVSSRG-----------TCHIFVLTPFGG 483 (627)
Q Consensus 434 ~~~~~~l~~-l~rG~t~a~I~sIaFSpDg~~Las~S~dg-----------TvhIw~i~~~gg 483 (627)
... ..+++ +..+ ..+.-..|+|.|||++.++.++.+ .=+||.+++.+.
T Consensus 125 ~~~-~~i~~~~p~~-~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 125 GAP-DTVFRGIPKG-VIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp CCC-EEEEEEECCC-SSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCc-EEEEEcCCCC-CCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 111 23332 3222 122357899999998776655422 224666666554
No 328
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=26.13 E-value=1.4e+02 Score=29.71 Aligned_cols=63 Identities=19% Similarity=0.242 Sum_probs=36.4
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEE
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAI 466 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las 466 (627)
.+..|.+.+++++++.+ .+|.+ |... . .|. .+.. +..+. ...+.+++|.++++++++
T Consensus 123 ~~~~i~~~~~~~~~~~~-~~g~v---~~S~-D-----gG~----------tW~~--~~~~~-~~~~~~~~~~~~~~~~~~ 179 (327)
T 2xbg_A 123 SPRLIKALGNGSAEMIT-NVGAI---YRTK-D-----SGK----------NWQA--LVQEA-IGVMRNLNRSPSGEYVAV 179 (327)
T ss_dssp CEEEEEEEETTEEEEEE-TTCCE---EEES-S-----TTS----------SEEE--EECSC-CCCEEEEEECTTSCEEEE
T ss_pred CeEEEEEECCCCEEEEe-CCccE---EEEc-C-----CCC----------CCEE--eecCC-CcceEEEEEcCCCcEEEE
Confidence 35667777788877765 46653 3332 1 121 0222 22233 235899999999998877
Q ss_pred EeCCCeE
Q 046828 467 VSSRGTC 473 (627)
Q Consensus 467 ~S~dgTv 473 (627)
+. +|.+
T Consensus 180 g~-~G~~ 185 (327)
T 2xbg_A 180 SS-RGSF 185 (327)
T ss_dssp ET-TSSE
T ss_pred EC-CCcE
Confidence 64 4443
No 329
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=25.65 E-value=2e+02 Score=30.05 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=39.2
Q ss_pred CcEEEEEECCCC--ceEEEEecCCe-------EEEEEec---------CcEEEEEe--CCeEEEEeCCCCceeEEE
Q 046828 179 PTAVRFYSLRSH--NYVHVLRFRST-------VYMVRCS---------PRIVAVGL--AAQIYCFDALTLESKFSV 234 (627)
Q Consensus 179 ~~tV~lwdl~t~--~~V~tL~f~s~-------V~sV~~s---------~~~LaV~~--~~~I~i~D~~t~e~~~tl 234 (627)
+-+|.+|||+|+ +.++++.|+.. ..+|++- ..++-++. ...|.+||+.+++..+.+
T Consensus 122 ~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~ 197 (381)
T 3q6k_A 122 RPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT 197 (381)
T ss_dssp CCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc
Confidence 346889999999 99999999643 4455544 22333443 346999999999866544
No 330
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.13 E-value=1.1e+02 Score=35.96 Aligned_cols=83 Identities=14% Similarity=0.215 Sum_probs=0.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCC---CCceeEEEEEeecCCcCcEEEEEEccCC
Q 046828 385 TSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDW---TSSHVHLYKLHRGMTSAVIQDICFSHYS 461 (627)
Q Consensus 385 ~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~---~~~~~~l~~l~rG~t~a~I~sIaFSpDg 461 (627)
...|.+++..++.++|.|-+.|++ +|||++. +|....+.+. ...........-+........+.|+|.+
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~-LRiWsl~-------t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~ 306 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYK-LKVLDLS-------TNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNS 306 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCE-EEEEETT-------TTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSS
T ss_pred cceEEEEeecCCCcEEEEEECCCE-EEEEECC-------CCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCC
Q ss_pred CEEEEEeCCCeEEEEEcCCCCC
Q 046828 462 QWIAIVSSRGTCHIFVLTPFGG 483 (627)
Q Consensus 462 ~~Las~S~dgTvhIw~i~~~gg 483 (627)
.|..++|.+....+
T Consensus 307 --------~g~F~~~~~~~~~~ 320 (950)
T 4gq2_M 307 --------HGSFSIYKLNANAH 320 (950)
T ss_dssp --------SCEEEEEEEEEC--
T ss_pred --------CcEEEEEEEecCCC
No 331
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=23.82 E-value=58 Score=32.04 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=0.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcE--------EEEEEc
Q 046828 387 PISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVI--------QDICFS 458 (627)
Q Consensus 387 ~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I--------~sIaFS 458 (627)
.+..|+|+|+|.+-|. .+| ++|.+.|..+. -+...+. ...| ..+.|.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G---~Ly~~~~~t~~-------------------~~~W~~s-~t~IG~~Gw~~F~a~~fD 96 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LND---KIYKGTPPTHD-------------------NDNWMGR-AKKIGNGGWNQFQFLFFD 96 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETT---EEEEESCCCST-------------------TCCHHHH-CEEEECSCGGGCSEEEEC
T ss_pred cceeEEECCCccEEEE--eCC---eEEEECCCCCC-------------------ccccccc-ccEecccccccceEEEEC
Q ss_pred cCCCEEEEEeCCCeEEEEE
Q 046828 459 HYSQWIAIVSSRGTCHIFV 477 (627)
Q Consensus 459 pDg~~Las~S~dgTvhIw~ 477 (627)
++|.+.++ .||.|.-++
T Consensus 97 ~~G~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 97 PNGYLYAV--SKDKLYKAS 113 (236)
T ss_dssp TTSCEEEE--ETTEEEEES
T ss_pred CCCCEEEe--CCCEEEEeC
No 332
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=23.59 E-value=5.2e+02 Score=25.21 Aligned_cols=31 Identities=10% Similarity=-0.030 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCC
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIM 416 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~ 416 (627)
.....|+|+|++..|..+......|.++|+.
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 4567899999888888887766668888874
No 333
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=21.44 E-value=6.2e+02 Score=26.83 Aligned_cols=112 Identities=10% Similarity=0.106 Sum_probs=59.5
Q ss_pred CCCCeEEEEECCCC---eEEEEecc---------CCCCeEEEEECCC----CCEEEEEeCCC---------CEEEE--Ee
Q 046828 362 DIAGMVVVKDIVSR---SVISQFRA---------HTSPISALCFDRS----GTLLVTASIHG---------NNINI--FR 414 (627)
Q Consensus 362 ~~dG~V~IwD~~s~---~~l~~~~a---------H~~~Is~laFspd----G~lLaTaS~dG---------t~I~V--wd 414 (627)
+..|.|+++|.... +.+..+.. ...-+..|+|+|+ |.+.++-+.+. ...+| |.
T Consensus 33 er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~ 112 (463)
T 2wg3_C 33 EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYT 112 (463)
T ss_dssp ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEE
T ss_pred eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEE
Confidence 45688888875422 12333321 1345788999997 77666644321 11244 44
Q ss_pred CCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEEEEeCCCe---------------EEEEEcC
Q 046828 415 IMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGT---------------CHIFVLT 479 (627)
Q Consensus 415 i~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgT---------------vhIw~i~ 479 (627)
+.... ... .++.. .+.+.++......+.-..|+|.|||++.++.++.+. =+|++|+
T Consensus 113 ~~~~~----~~~----~d~~~-~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~ 183 (463)
T 2wg3_C 113 VSRKN----PHQ----VDLRT-ARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLD 183 (463)
T ss_dssp BCTTC----TTS----BCGGG-CEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEB
T ss_pred EcCCC----CCc----cCCCC-ceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEE
Confidence 43100 000 01111 134445432222344789999999987777766542 2477777
Q ss_pred CCC
Q 046828 480 PFG 482 (627)
Q Consensus 480 ~~g 482 (627)
+.+
T Consensus 184 ~dg 186 (463)
T 2wg3_C 184 VDT 186 (463)
T ss_dssp CCC
T ss_pred CCC
Confidence 766
No 334
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=20.81 E-value=3.8e+02 Score=26.96 Aligned_cols=82 Identities=9% Similarity=0.185 Sum_probs=44.7
Q ss_pred EEEeccCCCCeEEEEECC-------CCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcC
Q 046828 378 ISQFRAHTSPISALCFDR-------SGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSA 450 (627)
Q Consensus 378 l~~~~aH~~~Is~laFsp-------dG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a 450 (627)
+..+..|. ....++|.. +|.++++.-. +..|..+++. .+. .....++..+. ..
T Consensus 264 ~~~~~~~~-ap~G~~~y~g~~fp~~~g~l~v~~~~-~~~v~~~~~~-------~~~----------~~~~~~~~~~~-~~ 323 (353)
T 2g8s_A 264 VFYWKDSP-AVSGMAFYNSDKFPQWQQKLFIGALK-DKDVIVMSVN-------GDK----------VTEDGRILTDR-GQ 323 (353)
T ss_dssp SEEESSCC-CEEEEEEECCSSSGGGTTEEEEEETT-TTEEEEEEEE-------TTE----------EEEEEEESGGG-CC
T ss_pred eEEeCCCc-CcceeEEECCccCcccCCcEEEEEcc-CCEEEEEEeC-------CCe----------EeeeEEcccCC-CC
Confidence 34445454 467788864 5776665444 4435555543 111 01222232221 23
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 451 VIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 451 ~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.+.+|++.|||...+ +++...=+||.|.+
T Consensus 324 rp~~v~~~pdG~lyv-~td~~~g~I~ri~~ 352 (353)
T 2g8s_A 324 RIRDVRTGPDGYLYV-LTDESSGELLKVSP 352 (353)
T ss_dssp CEEEEEECTTSCEEE-EECSTTEEEEEEEC
T ss_pred ceeEEEECCCCcEEE-EEeCCCCEEEEEeC
Confidence 699999999998544 44444556777754
No 335
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=20.59 E-value=1.9e+02 Score=32.34 Aligned_cols=105 Identities=11% Similarity=0.014 Sum_probs=61.9
Q ss_pred eEEEEECCC----Ce-EEEEeccCCCCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEE
Q 046828 366 MVVVKDIVS----RS-VISQFRAHTSPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHL 440 (627)
Q Consensus 366 ~V~IwD~~s----~~-~l~~~~aH~~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l 440 (627)
.|.|.|... +. .+..+.--.+| -.+.++|||++++.+..-...+.|+|+..-...- .+.. .++.. ...
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksP-HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~-~~k~---~~~~~--~~~ 371 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNP-HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLF-AGKL---ADPRD--VIV 371 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSC-CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHH-TTCC---SCGGG--GEE
T ss_pred CeeEEccccccccCCceEEEEeCCCCC-cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhh-hccc---cCccc--ceE
Confidence 478888876 32 33444433333 4578999999999998877668999986210000 0000 00000 122
Q ss_pred EEEeecCCcCcEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 046828 441 YKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFVLTP 480 (627)
Q Consensus 441 ~~l~rG~t~a~I~sIaFSpDg~~Las~S~dgTvhIw~i~~ 480 (627)
.+..-|. .-.-.+|.++|.-..+--.|..|-.|++..
T Consensus 372 ae~e~Gl---GPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 372 GEPELGL---GPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp ECCBCCS---CEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred eeccCCC---cccEEEECCCCceEeeeeecceEEEEeccH
Confidence 3333343 246789999994333444799999999975
No 336
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=20.38 E-value=5.6e+02 Score=24.36 Aligned_cols=50 Identities=8% Similarity=0.207 Sum_probs=28.9
Q ss_pred cEEEEEECCCCceEEEEecCC---eEEEEEecCcEEEEEeC-----CeEEEEeCCCCc
Q 046828 180 TAVRFYSLRSHNYVHVLRFRS---TVYMVRCSPRIVAVGLA-----AQIYCFDALTLE 229 (627)
Q Consensus 180 ~tV~lwdl~t~~~V~tL~f~s---~V~sV~~s~~~LaV~~~-----~~I~i~D~~t~e 229 (627)
+.+.+||+++++....-..+. .-..+.+..++++.|.. ..+++||..+.+
T Consensus 24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~ 81 (306)
T 3ii7_A 24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDS 81 (306)
T ss_dssp TSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTE
T ss_pred ceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCe
Confidence 458899999887543212221 12233345566666542 458888887764
No 337
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=20.30 E-value=6.1e+02 Score=25.17 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=49.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCCCCccccCCCCceeEEEEEeecCCcCcEEEEEEccCCCEEE
Q 046828 386 SPISALCFDRSGTLLVTASIHGNNINIFRIMPSSSKGRSGSASQTYDWTSSHVHLYKLHRGMTSAVIQDICFSHYSQWIA 465 (627)
Q Consensus 386 ~~Is~laFspdG~lLaTaS~dGt~I~Vwdi~p~~~~~~~g~~~~~~~~~~~~~~l~~l~rG~t~a~I~sIaFSpDg~~La 465 (627)
..+-.+....+...|+.++.+|.. ..|++..-+..++.+.+ +...+|..| ..|..+..-.++..|+
T Consensus 151 d~lv~~~~~~~~~~i~l~T~~G~~-~r~~~~ev~~~gR~~~G----------v~~i~L~~~---d~vv~~~~v~~~~~l~ 216 (312)
T 1suu_A 151 DFVTSAEIVFKDEKVICLSKKGSA-FIFNSRDVRLTNRGTQG----------VCGMKLKEG---DLFVKVLSVKENPYLL 216 (312)
T ss_dssp CCEEEEEEECTTCEEEEEETTSEE-EEEEGGGSCBCCTTBCC----------EECCCCCTT---CCEEEEEECTTCSEEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCcE-EEEEHHHccccCCCCCC----------eEeEEeCCC---CEEEEEEEECCCCeEE
Confidence 344444444445678888999985 45665311111111111 355555433 3466666656677899
Q ss_pred EEeCCCeEEEEEcCCC
Q 046828 466 IVSSRGTCHIFVLTPF 481 (627)
Q Consensus 466 s~S~dgTvhIw~i~~~ 481 (627)
+.+.+|....++++.+
T Consensus 217 ~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 217 IVSENGYGKRLNMSKI 232 (312)
T ss_dssp EEETTSEEEEEEGGGS
T ss_pred EEECCCceEEEEHHHh
Confidence 9999999999999876
Done!