BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046829
         (309 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D1G|A Chain A, Structure Of Francisella Tularensis Acid Phosphatase A
           (Acpa) Bound To Orthovanadate
 pdb|2D1G|B Chain B, Structure Of Francisella Tularensis Acid Phosphatase A
           (Acpa) Bound To Orthovanadate
          Length = 498

 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 19/130 (14%)

Query: 12  HQFDVS-FKRHCKEGKLPNYVVIE-PRYFDLLSLAANDDHPKHDIAQGQQLVKEIYEALR 69
           HQ+D+S F +   +  +P    ++ P Y D     +N       + + + LV  I   ++
Sbjct: 319 HQYDISEFWKALDQNNMPAVSYLKAPGYQDGHGGYSNP------LDEQEWLVNTI-NRIQ 371

Query: 70  ASPQWNETLFLIIYDEHGGFYDHVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILVS 129
            S  W+ T  +IIYD+  G YDHV +P +      DI G + +       G R+P +++S
Sbjct: 372 QSKDWDSTAIIIIYDDSDGDYDHVYSPKSQF---SDIKGRQGY-------GPRLPMLVIS 421

Query: 130 PWIKPGTVLH 139
           P+ K   V H
Sbjct: 422 PYAKANYVDH 431


>pdb|1H54|A Chain A, Maltose Phosphorylase From Lactobacillus Brevis
 pdb|1H54|B Chain B, Maltose Phosphorylase From Lactobacillus Brevis
          Length = 754

 Score = 30.0 bits (66), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 10/61 (16%)

Query: 80  LIIYDEHGGFYDHVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILVSPWIKPGTVLH 139
           L I+ +H GF D    PV+ +P+    +      + +D+       IL SP+IK G VL 
Sbjct: 549 LNIFVQHDGFLDKDIEPVSSIPADQRPINQN---WSWDK-------ILRSPYIKQGDVLQ 598

Query: 140 G 140
           G
Sbjct: 599 G 599


>pdb|3LV4|A Chain A, Crystal Structure Of The Glycoside Hydrolase, Family 43
           Yxia Protein From Bacillus Licheniformis. Northeast
           Structural Genomics Consortium Target Bir14.
 pdb|3LV4|B Chain B, Crystal Structure Of The Glycoside Hydrolase, Family 43
           Yxia Protein From Bacillus Licheniformis. Northeast
           Structural Genomics Consortium Target Bir14
          Length = 456

 Score = 28.1 bits (61), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 54  IAQGQQLVKEIYEALRASPQWNETLFLIIYD----EHGGFYDHV-------PTPVTGVPS 102
           +  G  L+  +YE L+ + +W E+  L   D    E G FY +        P    G+  
Sbjct: 50  VHDGNPLIPNVYEELKETFEWAESDTLWAPDVTQLEDGKFYXYYNACRGDSPRSALGLAV 109

Query: 103 PDDIVGP 109
            DDI GP
Sbjct: 110 ADDIEGP 116


>pdb|2PY6|A Chain A, Crystal Structure Of Methyltransferase Fkbm (Yp_546752.1)
           From Methylobacillus Flagellatus Kt At 2.20 A Resolution
          Length = 409

 Score = 27.7 bits (60), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 5/46 (10%)

Query: 86  HGGFY-----DHVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAI 126
           HGGF      DH P  +  V   DDI+   P F K D  G  + A+
Sbjct: 306 HGGFVKPADADHEPADLIDVRPIDDIIDDAPTFIKXDIEGSELSAL 351


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,929,499
Number of Sequences: 62578
Number of extensions: 434975
Number of successful extensions: 961
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 959
Number of HSP's gapped (non-prelim): 6
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)