Query 046829
Match_columns 309
No_of_seqs 212 out of 821
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 04:52:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03396 PC_PLC phospholipase 100.0 2.8E-50 6.1E-55 416.2 13.1 219 13-250 272-514 (690)
2 PF04185 Phosphoesterase: Phos 100.0 1.5E-44 3.2E-49 350.4 11.9 136 11-166 240-376 (376)
3 TIGR03397 acid_phos_Burk acid 100.0 8.4E-36 1.8E-40 298.4 14.8 138 17-185 334-482 (483)
4 COG3511 PlcC Phospholipase C [ 100.0 9.4E-32 2E-36 268.0 13.5 209 13-247 275-500 (527)
5 COG3511 PlcC Phospholipase C [ 97.7 2.9E-05 6.3E-10 79.2 3.5 121 14-167 369-495 (527)
6 PF00884 Sulfatase: Sulfatase; 97.0 0.002 4.4E-08 58.1 7.3 90 54-165 217-308 (308)
7 TIGR03417 chol_sulfatase choli 96.7 0.0063 1.4E-07 61.7 8.6 87 54-166 259-347 (500)
8 PRK13759 arylsulfatase; Provis 96.4 0.017 3.6E-07 58.5 9.1 88 54-166 274-366 (485)
9 PRK12363 phosphoglycerol trans 95.3 0.079 1.7E-06 56.8 9.3 84 54-166 361-445 (703)
10 COG3119 AslA Arylsulfatase A a 94.5 0.16 3.4E-06 51.5 8.5 92 54-167 266-360 (475)
11 PRK11598 putative metal depend 93.7 0.45 9.8E-06 49.7 10.2 100 53-166 423-527 (545)
12 COG3083 Predicted hydrolase of 93.7 0.38 8.3E-06 50.1 9.4 93 53-167 428-521 (600)
13 PRK03776 phosphoglycerol trans 89.5 3.9 8.4E-05 44.7 11.7 85 54-167 364-449 (762)
14 TIGR01696 deoB phosphopentomut 89.3 1.4 3E-05 44.3 7.7 79 53-166 296-374 (381)
15 PRK05362 phosphopentomutase; P 89.1 2.1 4.6E-05 43.2 8.9 109 18-167 268-382 (394)
16 PRK10649 hypothetical protein; 86.3 2.6 5.7E-05 44.2 7.9 91 53-166 432-531 (577)
17 PRK11560 phosphoethanolamine t 86.1 3.6 7.9E-05 43.2 8.8 96 53-166 437-539 (558)
18 KOG3867 Sulfatase [General fun 86.0 2.8 6.1E-05 43.9 7.8 97 53-166 274-373 (528)
19 PF01676 Metalloenzyme: Metall 85.5 2.5 5.4E-05 39.3 6.6 79 53-166 166-244 (252)
20 PRK12383 putative mutase; Prov 84.3 3.7 8.1E-05 41.7 7.7 109 18-166 278-389 (406)
21 PRK09598 lipid A phosphoethano 80.4 7.6 0.00016 40.4 8.4 88 53-166 409-504 (522)
22 cd00016 alkPPc Alkaline phosph 68.0 31 0.00066 34.6 8.8 98 53-165 275-384 (384)
23 PRK05434 phosphoglyceromutase; 64.0 42 0.00091 35.1 9.2 80 53-166 413-495 (507)
24 TIGR01307 pgm_bpd_ind 2,3-bisp 60.6 45 0.00097 35.0 8.6 112 18-166 373-490 (501)
25 COG1368 MdoB Phosphoglycerol t 54.9 37 0.00081 36.1 7.1 95 53-166 459-553 (650)
26 KOG3731 Sulfatases [Carbohydra 54.4 24 0.00053 36.8 5.4 84 58-166 283-368 (541)
27 COG1015 DeoB Phosphopentomutas 48.4 1.1E+02 0.0024 31.3 8.8 118 8-167 262-385 (397)
28 PRK10518 alkaline phosphatase; 46.8 93 0.002 32.4 8.3 93 53-166 368-476 (476)
29 COG1902 NemA NADH:flavin oxido 44.1 22 0.00047 35.5 3.2 36 240-279 135-170 (363)
30 PRK10605 N-ethylmaleimide redu 41.8 24 0.00053 34.9 3.2 36 240-279 145-180 (362)
31 PLN02538 2,3-bisphosphoglycera 39.4 1.9E+02 0.004 31.0 9.3 129 17-167 411-547 (558)
32 KOG2125 Glycosylphosphatidylin 39.1 1.1E+02 0.0023 33.7 7.5 84 54-166 220-307 (760)
33 cd02803 OYE_like_FMN_family Ol 31.5 46 0.001 31.6 3.2 36 240-279 127-162 (327)
34 cd02929 TMADH_HD_FMN Trimethyl 31.0 47 0.001 32.9 3.2 36 240-279 136-171 (370)
35 cd02931 ER_like_FMN Enoate red 30.0 50 0.0011 32.8 3.2 36 240-279 136-171 (382)
36 KOG0532 Leucine-rich repeat (L 27.4 57 0.0012 35.3 3.2 30 246-278 630-659 (722)
37 COG2194 Predicted membrane-ass 26.1 1.3E+02 0.0028 31.9 5.6 58 53-130 424-487 (555)
38 COG0548 ArgB Acetylglutamate k 24.9 81 0.0018 30.5 3.5 42 240-281 198-244 (265)
39 cd02933 OYE_like_FMN Old yello 24.5 78 0.0017 31.0 3.4 36 240-279 138-173 (338)
40 cd02930 DCR_FMN 2,4-dienoyl-Co 22.5 85 0.0018 30.7 3.2 34 240-277 123-156 (353)
41 cd04747 OYE_like_5_FMN Old yel 21.8 88 0.0019 31.1 3.2 37 241-281 131-167 (361)
42 cd04733 OYE_like_2_FMN Old yel 21.4 91 0.002 30.2 3.2 35 241-279 136-170 (338)
43 TIGR01323 nitrile_alph nitrile 20.9 74 0.0016 29.3 2.3 34 249-282 42-80 (185)
44 PLN02377 3-ketoacyl-CoA syntha 20.6 1.8E+02 0.004 30.4 5.4 59 215-277 135-194 (502)
45 cd04735 OYE_like_4_FMN Old yel 20.5 95 0.0021 30.4 3.1 36 240-279 130-165 (353)
46 PLN02192 3-ketoacyl-CoA syntha 20.2 1.8E+02 0.004 30.5 5.3 58 214-278 138-199 (511)
No 1
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=100.00 E-value=2.8e-50 Score=416.19 Aligned_cols=219 Identities=27% Similarity=0.397 Sum_probs=174.5
Q ss_pred CchHHHHHHHhcCCCCCeEEEccccccccCCCCCCCCCCCChHHHHHHHHHHHHHHHcCcC-CCCeEEEEEEecCCCccC
Q 046829 13 QFDVSFKRHCKEGKLPNYVVIEPRYFDLLSLAANDDHPKHDIAQGQQLVKEIYEALRASPQ-WNETLFLIIYDEHGGFYD 91 (309)
Q Consensus 13 ~~~~~F~~D~~~G~LP~vSfI~P~~~d~~~~~~nD~HP~~~va~Gd~fv~~v~~aL~~SP~-W~~TlIiITyDE~gGfyD 91 (309)
.+..+|++|+++|+||+||||+|+++ +||||.+++..|++||++||++|++||+ |++|||||||||||||||
T Consensus 272 ~~~~~f~~Dv~~g~LP~VS~I~p~~~-------~seHP~~~~~~G~~~i~~vl~aL~~nP~vW~~TvliItyDE~gGffD 344 (690)
T TIGR03396 272 DLLDQLRADVQAGTLPQVSWIVAPAA-------YSEHPGSSPAYGAWYVSRVLDALTANPEVWSKTVLLLNYDENDGFFD 344 (690)
T ss_pred cHHHHHHHHHHcCCCCeEEEEecCCC-------CCCCCCCChHHHHHHHHHHHHHHHhChhhhhceEEEEEEeCCCCccc
Confidence 34239999999999999999999985 8999999999999999999999999997 999999999999999999
Q ss_pred CCCCCCCCCCCCCCCC------CCCCccc----------ccCCCCCccceEEecCCCCCCeeecCCCCCCCCcccchhhH
Q 046829 92 HVPTPVTGVPSPDDIV------GPEPFFF----------KFDRLGVRVPAILVSPWIKPGTVLHGPSGPHPTSQFEHSSI 155 (309)
Q Consensus 92 HV~pP~~~~p~pdg~~------g~~p~~f----------~fd~lG~RVP~ivISPw~k~G~V~h~~~g~~~st~ydHtSI 155 (309)
||+||..+.+.+++.. +...+.| .+.|+|+|||+||||||+|+|+|+| +.|||+||
T Consensus 345 HV~PP~~p~~~~~~~~~g~~t~~~~~e~~~~~~~~~~~~~p~GlG~RVP~iVISPwsrgG~V~s--------~~~DHtSv 416 (690)
T TIGR03396 345 HVPPPVPPSYNADGTSAGKSTLDTAGEYFDVPDPAEARGRPIGLGPRVPMYVISPWSKGGWVNS--------QVFDHTSV 416 (690)
T ss_pred CcCCCCCCCcccccccccccccCCCccccccccccccccCcCCccceeeEEEECCCCCCCcccC--------ccccHHHH
Confidence 9999998766655432 1111222 1458999999999999999999996 58999999
Q ss_pred HHHHHHHhCCC--CCCcccccccCChhhhcccCCCCCCCCCCCCCCCC-CCCCCccc----chhhhHHHHHHHHHHHHHh
Q 046829 156 AATLKKIFNLK--EFLTKRDAWAGTFEGVLNRSTARADCPVKLSEPVR-TRDFDARE----DDELSEFQQELVQLAAAVK 228 (309)
Q Consensus 156 LrTIE~~fGL~--~~Lt~RdA~A~~l~~~f~~~~Prtd~P~~lp~~~~-~r~~~~~~----~~~l~~~Q~~l~~~a~~~~ 228 (309)
|||||++|||. ++..+|+++|++|+++|+|..|.+..++.||.+.. .....+.+ ...... ..+|..|-.
T Consensus 417 LrflE~~fgl~~~nis~wRra~~gDLtsafdf~~p~~~~~p~lp~~~~~~~~~~~~~~~~~~~~~p~----~~~~p~Qe~ 492 (690)
T TIGR03396 417 LRFLEKRFGVREPNISPWRRAVCGDLTSAFDFSRPDTTPFPALPDTSADYAVAAAALIPKYPPPPPA----TQQMPAQEK 492 (690)
T ss_pred HHHHHHHhCCCCcccChhhhcccccHHHhcCCCCCCcccCCCCCCccccccchhhhccccCCCCCCC----cCCCCCCCC
Confidence 99999999998 44457999999999999999998776678886641 11111000 111111 114668889
Q ss_pred cCCCCCCCchhhhhccchhhHH
Q 046829 229 GDLNSDFLPDDLLKTMNVGGGL 250 (309)
Q Consensus 229 g~~~~~~~~~~~~~~~~~~~~~ 250 (309)
|.++++++||+++-...+..+.
T Consensus 493 g~r~~ralPY~l~~~~~~~~~~ 514 (690)
T TIGR03396 493 GTRPARALPYELHVDARVDRAG 514 (690)
T ss_pred CCCcCcCCCcceeeeeEEecCC
Confidence 9999999999988776665444
No 2
>PF04185 Phosphoesterase: Phosphoesterase family; InterPro: IPR007312 This entry includes both bacterial phospholipase C enzymes (3.1.4.3 from EC) and eukaryotic acid phosphatases 3.1.3.2 from EC.; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2D1G_B.
Probab=100.00 E-value=1.5e-44 Score=350.39 Aligned_cols=136 Identities=46% Similarity=0.864 Sum_probs=89.7
Q ss_pred ccCchHHHHHHHhcCCCCCeEEEccccccccCCCCCCCCCCCCh-HHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCCCc
Q 046829 11 FHQFDVSFKRHCKEGKLPNYVVIEPRYFDLLSLAANDDHPKHDI-AQGQQLVKEIYEALRASPQWNETLFLIIYDEHGGF 89 (309)
Q Consensus 11 ~~~~~~~F~~D~~~G~LP~vSfI~P~~~d~~~~~~nD~HP~~~v-a~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~gGf 89 (309)
.+.++ +|++|+++|+||+||||+|+.| ||+||++++ +.||+||++||++|++||+|++|||||||||+|||
T Consensus 240 ~~~~~-~f~~d~~~g~LP~~sfI~p~~~-------~d~Hp~~~~~~~gd~~l~~vv~ai~~sp~W~~T~iiIt~DE~gG~ 311 (376)
T PF04185_consen 240 IVPLS-QFYADLANGTLPQVSFIEPNMC-------NDMHPPYSVIADGDAFLARVVEAIRNSPYWKNTAIIITYDENGGF 311 (376)
T ss_dssp EEECH-HHHHHHHTT---SEEEEE--GG-------GS--TTT--HHHHHHHHHHHHHHHHCSTTGGGEEEEEEES--TT-
T ss_pred cchHH-HHHHHHHcCCCCceEEEEecCc-------CCCCCCCCchhHHHHHHHHHHHHHhcCcCcCCeEEEEEEecCCCc
Confidence 45566 9999999999999999999875 899999875 99999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCcccccCCCCCccceEEecCCCCCCeeecCCCCCCCCcccchhhHHHHHHHHhCCC
Q 046829 90 YDHVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILVSPWIKPGTVLHGPSGPHPTSQFEHSSIAATLKKIFNLK 166 (309)
Q Consensus 90 yDHV~pP~~~~p~pdg~~g~~p~~f~fd~lG~RVP~ivISPw~k~G~V~h~~~g~~~st~ydHtSILrTIE~~fGL~ 166 (309)
||||+||....+.+|+..|+ |.|.|+|+|||+||||||+|+|+|+| +.|||+|||||||++||||
T Consensus 312 ~DHV~pp~~~~~~~~~~~g~----~~~~g~G~RVP~ivISP~~k~G~v~~--------~~ydh~Silrtie~~~gLP 376 (376)
T PF04185_consen 312 YDHVPPPRSPVPNPDEWVGP----FGFDGLGPRVPAIVISPYAKGGTVDH--------TPYDHTSILRTIEERFGLP 376 (376)
T ss_dssp ---------TTTT------S----TT------B--EEEESTTB-TTEEE-----------EETHHHHHHHHHHHT--
T ss_pred CCCCCCCCCCcccccccccc----CCCCCccccCCeEEeCCCCCCCcEeC--------CccchhHHHHHHHHHhCCC
Confidence 99999999988888887765 77899999999999999999999997 4899999999999999996
No 3
>TIGR03397 acid_phos_Burk acid phosphatase, Burkholderia-type. A member of this family, AcpA from Burkholderia mallei, has been charactized as a surface-bound glycoprotein with acid phosphatase activity, as can be shown with the colorigenic substrate 5-bromo-4-chloro-3-indolyl phosphate. This family shares regions of sequence similarity with phosphocholine-preferring phospholipase C enzymes (TIGR03396) from many of the same species.
Probab=100.00 E-value=8.4e-36 Score=298.36 Aligned_cols=138 Identities=34% Similarity=0.622 Sum_probs=123.4
Q ss_pred HHHHHHhcCCCCCeEEEccccccccCCCCCCCCCC-CChHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCCCccCCCCC
Q 046829 17 SFKRHCKEGKLPNYVVIEPRYFDLLSLAANDDHPK-HDIAQGQQLVKEIYEALRASPQWNETLFLIIYDEHGGFYDHVPT 95 (309)
Q Consensus 17 ~F~~D~~~G~LP~vSfI~P~~~d~~~~~~nD~HP~-~~va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~gGfyDHV~p 95 (309)
+|.+|+++|+||+||||+|+.+ +|+||+ .+|..||+||++|+++|+++|.|++|+|||||||+|||||||++
T Consensus 334 ~F~~Dv~~g~LPqvSfI~P~~~-------~d~Hp~~s~v~~gD~~vg~vl~aL~~~p~w~NTlII~T~DENGG~~Dhv~p 406 (483)
T TIGR03397 334 SFIAAIDAGKLPQVSFYKPQGN-------LNEHAGYADVAAGDRHIADVIAHLQKSPQWKNMVVIVTYDENGGFWDHVAP 406 (483)
T ss_pred HHHHHHHcCCCCcEEEEeCCCC-------CCCCcCCCCHHHHHHHHHHHHHHHHhCccccCcEEEEEEECCCCcCcCCCC
Confidence 6999999999999999999874 799997 48999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCCccceEEecCCCCCCeeecCCCCCCCCcccchhhHHHHHHHHhCCCCC---Cccc
Q 046829 96 PVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILVSPWIKPGTVLHGPSGPHPTSQFEHSSIAATLKKIFNLKEF---LTKR 172 (309)
Q Consensus 96 P~~~~p~pdg~~g~~p~~f~fd~lG~RVP~ivISPw~k~G~V~h~~~g~~~st~ydHtSILrTIE~~fGL~~~---Lt~R 172 (309)
|.. .. -+.|+|||+||||||+++|+|+| +.|+|+|||+|||++|||+++ ..+|
T Consensus 407 Pk~------~~----------~ggG~RVP~IVisP~~k~G~v~~--------~~~dh~SiL~Tie~~~GL~~L~~is~~~ 462 (483)
T TIGR03397 407 PKG------DR----------WGPGTRIPAIVVSPFAKKGYVDH--------TPYDTTSILRFITRRFGLPPLPGVKARD 462 (483)
T ss_pred CCc------CC----------CCCccEEEEEEEECCCCCCcEeC--------ceeeeehHHHHHHHHhCCCCcCCCchhh
Confidence 732 11 14699999999999999999997 489999999999999999962 2466
Q ss_pred cccc-------CChhhhccc
Q 046829 173 DAWA-------GTFEGVLNR 185 (309)
Q Consensus 173 dA~A-------~~l~~~f~~ 185 (309)
++.+ +||+++|+|
T Consensus 463 ~a~~~~~~~~~GDlT~a~~f 482 (483)
T TIGR03397 463 RALAARGAKPMGDLTNALDL 482 (483)
T ss_pred hhhhhccCCCCccccccccC
Confidence 7776 999999987
No 4
>COG3511 PlcC Phospholipase C [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=9.4e-32 Score=267.99 Aligned_cols=209 Identities=22% Similarity=0.364 Sum_probs=156.0
Q ss_pred CchHHHHHHHhcCCCCCeEEEccccccccCCCCCCCCCCCChHHHHHHHHHHHHHHHcCcC-CCCeEEEEEEecCCCccC
Q 046829 13 QFDVSFKRHCKEGKLPNYVVIEPRYFDLLSLAANDDHPKHDIAQGQQLVKEIYEALRASPQ-WNETLFLIIYDEHGGFYD 91 (309)
Q Consensus 13 ~~~~~F~~D~~~G~LP~vSfI~P~~~d~~~~~~nD~HP~~~va~Gd~fv~~v~~aL~~SP~-W~~TlIiITyDE~gGfyD 91 (309)
.+..+|++|+++|+||+||||.++++ .++||.-....|.+.+..++++|.++|+ |++|+|||+|||+|||||
T Consensus 275 ~~~~~~~~Dvk~~tLPqVSWvi~~~~-------~sehp~wp~~~GA~~~~~~l~~l~~np~vW~kT~l~v~~DE~~GfyD 347 (527)
T COG3511 275 GYLDDFADDVKNNTLPQVSWVIAPGL-------ESEHPNWPWYAGAWYIVTVLRILTSNPAVWAKTVLFVTYDENGGFYD 347 (527)
T ss_pred CchHHhhhhhhcCCCCceeeeccccc-------cccCCCCCcccchHHHHHHHHHhhcCcccccceeEEEEecCCCCccc
Confidence 34458999999999999999999875 6899986777999999999999999998 999999999999999999
Q ss_pred CCCCCCCCCCCCCC-CCC--CCCccc-------ccCCCCCccceEEecCCCCCCeeecCCCCCCCCcccchhhHHHHHHH
Q 046829 92 HVPTPVTGVPSPDD-IVG--PEPFFF-------KFDRLGVRVPAILVSPWIKPGTVLHGPSGPHPTSQFEHSSIAATLKK 161 (309)
Q Consensus 92 HV~pP~~~~p~pdg-~~g--~~p~~f-------~fd~lG~RVP~ivISPw~k~G~V~h~~~g~~~st~ydHtSILrTIE~ 161 (309)
||.||+.+.-.+.+ +.| ..+..| .--++|.|||.++||||+|+|++++ ..+||+|+++++|+
T Consensus 348 hv~Ppt~p~~~~g~~l~~~~~~d~~~e~~~~~G~p~gLgfrvP~~visPws~gg~~~s--------d~fDhts~l~f~~~ 419 (527)
T COG3511 348 HVVPPTAPSGTPGEHLPGLSTIDAAFESGIDRGSPYGLGFRVPCGVISPWSRGGYVDS--------DTFDHTSALRFLEL 419 (527)
T ss_pred ccCCCCCCCCCccccccCCccccccccccccCCCCcceeccccceeecCCCCCCeeee--------cccchHHHHHhhhh
Confidence 99999875322221 111 011111 1236899999999999999999996 47999999999999
Q ss_pred HhCCC--CCCcccccccCChhhhcccCCCCCCCCCCCCCCCC--CCCCCcccchhhhHHHHHHHHHHHHHhcCCCCCCCc
Q 046829 162 IFNLK--EFLTKRDAWAGTFEGVLNRSTARADCPVKLSEPVR--TRDFDAREDDELSEFQQELVQLAAAVKGDLNSDFLP 237 (309)
Q Consensus 162 ~fGL~--~~Lt~RdA~A~~l~~~f~~~~Prtd~P~~lp~~~~--~r~~~~~~~~~l~~~Q~~l~~~a~~~~g~~~~~~~~ 237 (309)
+||++ ++...|++.+++|+.+|+|+.|.. .-+.+|.+.. ++.... + ...-+..+..|.+.+++.|
T Consensus 420 rfgv~~Pn~s~wr~~V~gD~ts~fdfa~Pp~-~~~~~P~t~~p~~~~~~~-----~-----~~~~vp~~~~g~~~lr~ip 488 (527)
T COG3511 420 RFGVPVPNISPWRRAVTGDLTSAFDFAAPPK-ADPWLPNTRHPALIVLPF-----A-----KQGCVPKQELGTRPLRAIP 488 (527)
T ss_pred hccccCCCccccceeeeecccceeecccCCC-CCCCCCCCCccccccccc-----c-----cccccCccccccccccccc
Confidence 99976 666899999999999999988872 2223443321 111110 0 0003335556788889999
Q ss_pred hh--hhhccchh
Q 046829 238 DD--LLKTMNVG 247 (309)
Q Consensus 238 ~~--~~~~~~~~ 247 (309)
|+ +...|-.+
T Consensus 489 Yr~~~p~~~~~~ 500 (527)
T COG3511 489 YRLELPQLYPIQ 500 (527)
T ss_pred eEeecCcccccc
Confidence 85 44444433
No 5
>COG3511 PlcC Phospholipase C [Cell envelope biogenesis, outer membrane]
Probab=97.67 E-value=2.9e-05 Score=79.23 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=94.6
Q ss_pred chHHHHHHHhcCCCCCeEEEccccccccCCCCCCCCCC---CChHHHHHHHHHHHHHHHcC---cCCCCeEEEEEEecCC
Q 046829 14 FDVSFKRHCKEGKLPNYVVIEPRYFDLLSLAANDDHPK---HDIAQGQQLVKEIYEALRAS---PQWNETLFLIIYDEHG 87 (309)
Q Consensus 14 ~~~~F~~D~~~G~LP~vSfI~P~~~d~~~~~~nD~HP~---~~va~Gd~fv~~v~~aL~~S---P~W~~TlIiITyDE~g 87 (309)
.+..|..++.+|.++.+.|-+|-+ ..+.|.. .+...+|....-++-.++.+ |+|..-.+.|+|||++
T Consensus 369 ~d~~~e~~~~~G~p~gLgfrvP~~-------visPws~gg~~~sd~fDhts~l~f~~~rfgv~~Pn~s~wr~~V~gD~ts 441 (527)
T COG3511 369 IDAAFESGIDRGSPYGLGFRVPCG-------VISPWSRGGYVDSDTFDHTSALRFLELRFGVPVPNISPWRRAVTGDLTS 441 (527)
T ss_pred ccccccccccCCCCcceeccccce-------eecCCCCCCeeeecccchHHHHHhhhhhccccCCCccccceeeeecccc
Confidence 444567777788888888888743 1356652 25566777777777788888 9999999999999999
Q ss_pred CccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCccceEEecCCCCCCeeecCCCCCCCCcccchhhHHHHHHHHhCCCC
Q 046829 88 GFYDHVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILVSPWIKPGTVLHGPSGPHPTSQFEHSSIAATLKKIFNLKE 167 (309)
Q Consensus 88 GfyDHV~pP~~~~p~pdg~~g~~p~~f~fd~lG~RVP~ivISPw~k~G~V~h~~~g~~~st~ydHtSILrTIE~~fGL~~ 167 (309)
+|||..||.. .| .+.|.|+|.+.++|.++.+.|.+ +.|+..+ ++.|-.++.++.
T Consensus 442 -~fdfa~Pp~~-~~---------------~~P~t~~p~~~~~~~~~~~~vp~--------~~~g~~~-lr~ipYr~~~p~ 495 (527)
T COG3511 442 -AFDFAAPPKA-DP---------------WLPNTRHPALIVLPFAKQGCVPK--------QELGTRP-LRAIPYRLELPQ 495 (527)
T ss_pred -eeecccCCCC-CC---------------CCCCCCcccccccccccccccCc--------ccccccc-ccccceEeecCc
Confidence 7899988722 11 13589999999999999999886 4788888 999999999984
No 6
>PF00884 Sulfatase: Sulfatase; InterPro: IPR000917 Sulphatases 3.1.6. from EC are enzymes that hydrolyze various sulphate esters. The sequence of different types of sulphatases are available and have shown to be structurally related [, , ]; these include: arylsulphatase A 3.1.6.8 from EC (ASA), a lysosomal enzyme which hydrolyses cerebroside sulphate; arylsulphatase B 3.1.6.12 from EC (ASB), which hydrolyses the sulphate ester group from N-acetylgalactosamine 4-sulphate residues of dermatan sulphate; arylsulphatase C (ASD) and E (ASE); steryl-sulphatase 3.1.6.2 from EC (STS), a membrane bound microsomal enzyme which hydrolyses 3-beta-hydroxy steroid sulphates; iduronate 2-sulphatase precursor 3.1.6.13 from EC (IDS), a lysosomal enzyme that hydrolyses the 2-sulphate groups from non-reducing-terminal iduronic acid residues in dermatan sulphate and heparan sulphate; N-acetylgalactosamine-6-sulphatase 3.1.6.4 from EC, which hydrolyses the 6-sulphate groups of the N-acetyl-d-galactosamine 6-sulphate units of chondroitin sulphate and the D-galactose 6-sulphate units of keratan sulphate; glucosamine-6-sulphatase 3.1.6.14 from EC (G6S), which hydrolyses the N-acetyl-D-glucosamine 6-sulphate units of heparan sulphate and keratan sulphate; N-sulphoglucosamine sulphohydrolase 3.10.1.1 from EC (sulphamidase), the lysosomal enzyme that catalyses the hydrolysis of N-sulpho-d-glucosamine into glucosamine and sulphate; sea urchin embryo arylsulphatase 3.1.6.1 from EC; green algae arylsulphatase 3.1.6.1 from EC, which plays an important role in the mineralisation of sulphates; and arylsulphatase 3.1.6.1 from EC from Escherichia coli (aslA), Klebsiella aerogenes (gene atsA) and Pseudomonas aeruginosa (gene atsA). ; GO: 0008484 sulfuric ester hydrolase activity, 0008152 metabolic process; PDB: 1P49_A 1FSU_A 2QZU_A 2W5Q_A 2W5T_A 2W5S_A 2W5R_A 3LXQ_A 1HDH_B 1E33_P ....
Probab=97.03 E-value=0.002 Score=58.12 Aligned_cols=90 Identities=22% Similarity=0.286 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCCCccC--CCCCCCCCCCCCCCCCCCCCcccccCCCCCccceEEecCC
Q 046829 54 IAQGQQLVKEIYEALRASPQWNETLFLIIYDEHGGFYD--HVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILVSPW 131 (309)
Q Consensus 54 va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~gGfyD--HV~pP~~~~p~pdg~~g~~p~~f~fd~lG~RVP~ivISPw 131 (309)
|..-|.+|+++++.|++...+++|+||||=|-...+.. +.-. .++. ......+.|||+++++|-
T Consensus 217 i~~~D~~l~~~~~~l~~~~~~d~TiiiitsDHG~~~~e~~~~~~-----------~~~~---~~~~~~~~~vP~~i~~p~ 282 (308)
T PF00884_consen 217 IAYVDDQLGRFIEYLKEQGLYDNTIIIITSDHGESFGENGHYFH-----------GGKG---NDLYEESYHVPLIIYWPG 282 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGEEEEEEESSSSSTGGHHTTSS-----------SSTT---HSSSHHHHBEEEEEECTT
T ss_pred HHHHHHHhhhhhhhhhhcCCcccceeEEecCcCccccccccccc-----------cccc---ccchhhccccceEEEcCC
Confidence 56678899999999999999999999999444333322 2110 0000 000123679999999999
Q ss_pred CCCCeeecCCCCCCCCcccchhhHHHHHHHHhCC
Q 046829 132 IKPGTVLHGPSGPHPTSQFEHSSIAATLKKIFNL 165 (309)
Q Consensus 132 ~k~G~V~h~~~g~~~st~ydHtSILrTIE~~fGL 165 (309)
..+..+.. ...+|.-|.-||-+++|+
T Consensus 283 ~~~~~~~~--------~~~s~~Di~pTll~l~Gi 308 (308)
T PF00884_consen 283 GEPQQTID--------RLVSHIDIAPTLLDLLGI 308 (308)
T ss_dssp SSSCEEEC--------S-EEGGGHHHHHHHHTT-
T ss_pred CCCCcEEC--------CeEEhHHHHHHHHHHhCC
Confidence 99884442 467899999999999986
No 7
>TIGR03417 chol_sulfatase choline-sulfatase.
Probab=96.71 E-value=0.0063 Score=61.75 Aligned_cols=87 Identities=22% Similarity=0.324 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCCC-ccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCccceEEecCC-
Q 046829 54 IAQGQQLVKEIYEALRASPQWNETLFLIIYDEHGG-FYDHVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILVSPW- 131 (309)
Q Consensus 54 va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~gG-fyDHV~pP~~~~p~pdg~~g~~p~~f~fd~lG~RVP~ivISPw- 131 (309)
|..=|..|++|+++|.+...+++|+||+|=| ||. +-+| |..+- ..+-..|.|||+||..|-
T Consensus 259 v~~~D~~iG~il~~L~~~g~~dnTivvf~sD-HG~~~G~~------------g~~~K----~~~ye~~~~vPlii~~p~~ 321 (500)
T TIGR03417 259 ISYLDDKIGELLQTLEETRQADDTIVLFTSD-HGDMLGER------------GLWYK----MSFFEGSARVPLMVHAPGR 321 (500)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCcEEEEECC-CchhhccC------------Ccccc----cCcccccceEeEEEEeCCC
Confidence 4456788999999999999999999999844 443 2244 11110 112234899999999996
Q ss_pred CCCCeeecCCCCCCCCcccchhhHHHHHHHHhCCC
Q 046829 132 IKPGTVLHGPSGPHPTSQFEHSSIAATLKKIFNLK 166 (309)
Q Consensus 132 ~k~G~V~h~~~g~~~st~ydHtSILrTIE~~fGL~ 166 (309)
+++|.++ ....|.-|+.||-++.|++
T Consensus 322 ~~~~~~~---------~~v~~~Di~pTil~l~g~~ 347 (500)
T TIGR03417 322 FAPGRVA---------APVSTVDLLPTLVDLAGGD 347 (500)
T ss_pred CCCcccC---------CceeehhHHHHHHHHhCCC
Confidence 4556543 2467899999999999997
No 8
>PRK13759 arylsulfatase; Provisional
Probab=96.35 E-value=0.017 Score=58.49 Aligned_cols=88 Identities=22% Similarity=0.327 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCCC-ccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCccceEEecCC-
Q 046829 54 IAQGQQLVKEIYEALRASPQWNETLFLIIYDEHGG-FYDHVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILVSPW- 131 (309)
Q Consensus 54 va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~gG-fyDHV~pP~~~~p~pdg~~g~~p~~f~fd~lG~RVP~ivISPw- 131 (309)
|..-|..|++++++|.+...+++|+||+|= +||. +.+|- ..+- ...+ -.+.|||+||-+|-
T Consensus 274 i~~~D~~iG~l~~~l~~~g~~dnTiiv~ts-DHG~~~g~~~------------~~~k---~~~~-e~~~rVPlii~~p~~ 336 (485)
T PRK13759 274 ITHIDHQIGRFLQALKEFGLLDNTIILFVS-DHGDMLGDHY------------LFRK---GYPY-EGSAHIPFIIYDPGG 336 (485)
T ss_pred HHHHHHHHHHHHHHHHhcCCccCeEEEEEC-CCcccccccc------------cccC---Cccc-cccceeeEEEecCCc
Confidence 445678999999999999999999988874 4443 33331 1110 0011 23799999999996
Q ss_pred ---CCCCeeecCCCCCCCCcccchhhHHHHHHHHhCCC
Q 046829 132 ---IKPGTVLHGPSGPHPTSQFEHSSIAATLKKIFNLK 166 (309)
Q Consensus 132 ---~k~G~V~h~~~g~~~st~ydHtSILrTIE~~fGL~ 166 (309)
+++|.+.. ....|..|..||-++.|++
T Consensus 337 ~~~~~~g~~~~--------~~v~~~Di~pTil~l~g~~ 366 (485)
T PRK13759 337 LLAGNRGTVID--------QVVELRDIMPTLLDLAGGT 366 (485)
T ss_pred ccccCCCceec--------CcceecchHHHHHHHhCCC
Confidence 34565543 3567899999999999987
No 9
>PRK12363 phosphoglycerol transferase I; Provisional
Probab=95.35 E-value=0.079 Score=56.83 Aligned_cols=84 Identities=19% Similarity=0.207 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCccceEEe-cCCC
Q 046829 54 IAQGQQLVKEIYEALRASPQWNETLFLIIYDEHGGFYDHVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILV-SPWI 132 (309)
Q Consensus 54 va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~gGfyDHV~pP~~~~p~pdg~~g~~p~~f~fd~lG~RVP~ivI-SPw~ 132 (309)
+..-|..|+++++.|++++.|++|+|||+= +|++..+ +... .-+...|||.+++ .|-+
T Consensus 361 I~ysD~aIG~FId~LKksglydNTIIV~~G-DH~~~~~-------------~~~~-------~L~~~kRvP~~I~ip~gi 419 (703)
T PRK12363 361 IKCSDRLIGQLVDRIRNSRYGKNTIIVIAS-DHLAMPN-------------DLSD-------VLTKQKRENLLLFLGKDI 419 (703)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCeEEEEEc-CCCcccc-------------cccc-------cCCCCCeEEEEEEECCcC
Confidence 456789999999999999999999988862 2443211 0110 0122458886665 4777
Q ss_pred CCCeeecCCCCCCCCcccchhhHHHHHHHHhCCC
Q 046829 133 KPGTVLHGPSGPHPTSQFEHSSIAATLKKIFNLK 166 (309)
Q Consensus 133 k~G~V~h~~~g~~~st~ydHtSILrTIE~~fGL~ 166 (309)
++|.+.+ ....|.-|+-||-.+.|++
T Consensus 420 k~g~i~~--------~~gS~iDI~PTLL~LLGi~ 445 (703)
T PRK12363 420 APQQVVT--------RAGTTLDSGATLLQLLEPG 445 (703)
T ss_pred CCCcEEC--------CeeeeeHHHHHHHHHhCCC
Confidence 7787754 3678999999999999986
No 10
>COG3119 AslA Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]
Probab=94.51 E-value=0.16 Score=51.50 Aligned_cols=92 Identities=20% Similarity=0.263 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCCC-ccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCccceEEecCCC
Q 046829 54 IAQGQQLVKEIYEALRASPQWNETLFLIIYDEHGG-FYDHVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILVSPWI 132 (309)
Q Consensus 54 va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~gG-fyDHV~pP~~~~p~pdg~~g~~p~~f~fd~lG~RVP~ivISPw~ 132 (309)
|..=|.-|++++++|...-.|++|+||+| -+||. ...|-. |. .+-.. .+-..|.|||+|+=-|..
T Consensus 266 v~~~D~~iGrll~~L~~~g~~DnTivvft-sDhG~~~~~~~~-~~---------~~~k~---~~~egg~~VPliI~~Pg~ 331 (475)
T COG3119 266 VRYLDDQIGRLLDALKELGLLDNTIVVFT-SDHGAWLGAHGT-PF---------RGYKG---TLYEGGTRVPLIIRWPGG 331 (475)
T ss_pred HHHHHHHHhHHHHHHHHhCCccCcEEEEe-CCCCCcccCCCC-cc---------ccccc---ccccCcccceEEEeccCc
Confidence 55668889999999999999999999966 45552 111110 00 00000 122469999999988874
Q ss_pred --CCCeeecCCCCCCCCcccchhhHHHHHHHHhCCCC
Q 046829 133 --KPGTVLHGPSGPHPTSQFEHSSIAATLKKIFNLKE 167 (309)
Q Consensus 133 --k~G~V~h~~~g~~~st~ydHtSILrTIE~~fGL~~ 167 (309)
.+|.+.. ..-.|..|+-||-+..|++.
T Consensus 332 i~~~g~~~~--------~~v~~~Di~PTll~~aG~~~ 360 (475)
T COG3119 332 IKPGGRVVD--------ALVSLIDLLPTLLDAAGVPP 360 (475)
T ss_pred cCCCCcccc--------ccchhhHHHHHHHHHcCCCC
Confidence 4466553 24456999999999999984
No 11
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=93.74 E-value=0.45 Score=49.65 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCCC-ccCCCCCCCCCCCCCCCCCC-CCCcccccCCCCCccceEE-ec
Q 046829 53 DIAQGQQLVKEIYEALRASPQWNETLFLIIYDEHGG-FYDHVPTPVTGVPSPDDIVG-PEPFFFKFDRLGVRVPAIL-VS 129 (309)
Q Consensus 53 ~va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~gG-fyDHV~pP~~~~p~pdg~~g-~~p~~f~fd~lG~RVP~iv-IS 129 (309)
.|..-|..|+++++.|++...|++|+||++=| ||- +.+| |..+ ..++.+.. ..+.|||+|+ .|
T Consensus 423 sI~ytD~~lg~ii~~Lk~~~~~~nT~iIy~SD-HGe~lge~------------g~~~hg~~y~~aP-~~~~~VPliiw~s 488 (545)
T PRK11598 423 TILYVDYIVDKAINLLKQHQDKFNTSLVYLSD-HGESLGEN------------GIYLHGLPYAIAP-DQQTHVPMLLWLS 488 (545)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcCCeEEEEECc-CCCccccC------------CcccCCCccccCc-cccccccEEEEEC
Confidence 46778999999999999999999999877744 442 2233 0000 01111111 2378999998 57
Q ss_pred CCCCCCeeecCC--CCCCCCcccchhhHHHHHHHHhCCC
Q 046829 130 PWIKPGTVLHGP--SGPHPTSQFEHSSIAATLKKIFNLK 166 (309)
Q Consensus 130 Pw~k~G~V~h~~--~g~~~st~ydHtSILrTIE~~fGL~ 166 (309)
|-.+++...... .+......+.|-.|..||-.++|++
T Consensus 489 ~~~~~~~~~~~~~l~~~~~~~~~s~ddl~~TlL~l~gI~ 527 (545)
T PRK11598 489 PDYQKRYGVDQQCLQKQAQTQDYSQDNLFSTLLGLTGVQ 527 (545)
T ss_pred cchhccccchhhhhhhhccCCceeHHhHHHHHHHHhCCC
Confidence 744433321100 0000124689999999999999997
No 12
>COG3083 Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]
Probab=93.72 E-value=0.38 Score=50.14 Aligned_cols=93 Identities=20% Similarity=0.339 Sum_probs=70.4
Q ss_pred ChHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCccceEEecCCC
Q 046829 53 DIAQGQQLVKEIYEALRASPQWNETLFLIIYDEHGGFYDHVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILVSPWI 132 (309)
Q Consensus 53 ~va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~gGfyDHV~pP~~~~p~pdg~~g~~p~~f~fd~lG~RVP~ivISPw~ 132 (309)
.+.+-|..|++|+|+|+++..-+||++|||=|-+--|=|- ....+|-. -+|.|.-..||+++==|=.
T Consensus 428 a~~~vD~~I~~vLe~L~~~~~L~NTvVIITs~HG~eFne~----------~~~ywG~~---t~ysr~qlqVPlvihwpg~ 494 (600)
T COG3083 428 ALREVDSQIGRVLEQLRNSGLLDNTVVIITADHGEEFNEE----------EQNYWGHG---TNYSRYQLQVPLVIHWPGT 494 (600)
T ss_pred HHHHHHHHHHHHHHHHhhcccccceEEEEECCCCcccCcc----------ccccccCC---CccccceecccEEEEeCCC
Confidence 4777899999999999999999999999996544333111 11234422 2356777889999988988
Q ss_pred CCCeeecCCCCCCCCcccchhhHHHHHHH-HhCCCC
Q 046829 133 KPGTVLHGPSGPHPTSQFEHSSIAATLKK-IFNLKE 167 (309)
Q Consensus 133 k~G~V~h~~~g~~~st~ydHtSILrTIE~-~fGL~~ 167 (309)
.+|.|.|- .+|.-|..|+-+ ++|+.+
T Consensus 495 ~~~~v~~l---------TsH~Dl~~tLMq~ll~V~n 521 (600)
T COG3083 495 PAGRVNHL---------TSHLDLMTTLMQRLLGVSN 521 (600)
T ss_pred cchhhcCc---------cchhhhHHHHHHHHhcCCC
Confidence 89998873 589999999766 999984
No 13
>PRK03776 phosphoglycerol transferase I; Provisional
Probab=89.52 E-value=3.9 Score=44.66 Aligned_cols=85 Identities=13% Similarity=0.153 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCCCcc-CCCCCCCCCCCCCCCCCCCCCcccccCCCCCccceEEecCCC
Q 046829 54 IAQGQQLVKEIYEALRASPQWNETLFLIIYDEHGGFY-DHVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILVSPWI 132 (309)
Q Consensus 54 va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~gGfy-DHV~pP~~~~p~pdg~~g~~p~~f~fd~lG~RVP~ivISPw~ 132 (309)
+..-|..|+++++.|.+++.|++|+||++=| ||... +| +. + .. .....++++++.+|-.
T Consensus 364 v~~~D~~iG~fi~~Lk~~g~~dNTiIV~~sD-HG~m~g~~---------------~~--~-l~-~~kr~~i~lII~~p~~ 423 (762)
T PRK03776 364 VSCSQENIAALINKIKASPWFKNTVIVVSSD-HLAMNNTA---------------WK--Y-LN-KQDRNNLFFVIRGDKP 423 (762)
T ss_pred HHHHHHHHHHHHHHHHhCCCccCeEEEEEcc-CCcccccc---------------ch--h-hc-cCCceeEEEEEECCCc
Confidence 6667999999999999999999999988744 43321 11 00 0 00 0112457777778764
Q ss_pred CCCeeecCCCCCCCCcccchhhHHHHHHHHhCCCC
Q 046829 133 KPGTVLHGPSGPHPTSQFEHSSIAATLKKIFNLKE 167 (309)
Q Consensus 133 k~G~V~h~~~g~~~st~ydHtSILrTIE~~fGL~~ 167 (309)
.|.+.. ....|.-|.-||-+..|+++
T Consensus 424 -~g~~~~--------~~vs~IDI~PTILdlaGi~~ 449 (762)
T PRK03776 424 -QQETLA--------VKRNTMDNGATVLDILGGDN 449 (762)
T ss_pred -CCceEC--------CceeehhHHHHHHHHhCCCc
Confidence 444442 36789999999999999874
No 14
>TIGR01696 deoB phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway. It catalyzes the conversion of D-ribose 1-phosphate to D-ribose 5-phosphate and the conversion of 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed members of this protein are characterized deoB proteins from E.Coli and Bacillus. This model matches pfam01676 for Metalloenzyme superfamily.
Probab=89.30 E-value=1.4 Score=44.32 Aligned_cols=79 Identities=28% Similarity=0.491 Sum_probs=53.7
Q ss_pred ChHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCccceEEecCCC
Q 046829 53 DIAQGQQLVKEIYEALRASPQWNETLFLIIYDEHGGFYDHVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILVSPWI 132 (309)
Q Consensus 53 ~va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~gGfyDHV~pP~~~~p~pdg~~g~~p~~f~fd~lG~RVP~ivISPw~ 132 (309)
.+..=|..|.+++++|. ++++||||= +||. | |.. .+. +.--.|||+|+.+|-+
T Consensus 296 ale~vD~~Lg~ll~~L~-----~~tllIITA-DHG~--D----p~~--------~~t-------~HTre~VPlIi~gp~i 348 (381)
T TIGR01696 296 ALELFDRRLPELFSLLR-----EDDLLIITA-DHGN--D----PTW--------TGT-------DHTREYIPVLVYSPKV 348 (381)
T ss_pred HHHHHHHHHHHHHHHhc-----cCCEEEEEC-CCCC--C----CCC--------CCC-------cCCCCCEeEEEEECCC
Confidence 35556888999999986 367888873 3443 1 110 000 0113499999999998
Q ss_pred CCCeeecCCCCCCCCcccchhhHHHHHHHHhCCC
Q 046829 133 KPGTVLHGPSGPHPTSQFEHSSIAATLKKIFNLK 166 (309)
Q Consensus 133 k~G~V~h~~~g~~~st~ydHtSILrTIE~~fGL~ 166 (309)
++|..... .-.+.-|..||-++||++
T Consensus 349 ~~g~~l~~--------~~slaDIapTIldllGv~ 374 (381)
T TIGR01696 349 KPGHSLGH--------RETFADIGATIADNFGTS 374 (381)
T ss_pred CCCceeCC--------CCEehhHHHHHHHHcCcC
Confidence 88754432 346889999999999998
No 15
>PRK05362 phosphopentomutase; Provisional
Probab=89.10 E-value=2.1 Score=43.19 Aligned_cols=109 Identities=26% Similarity=0.352 Sum_probs=66.5
Q ss_pred HHHHHhcCCCCCeEEEccccccccCCCCCCCCCC------CChHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCCCccC
Q 046829 18 FKRHCKEGKLPNYVVIEPRYFDLLSLAANDDHPK------HDIAQGQQLVKEIYEALRASPQWNETLFLIIYDEHGGFYD 91 (309)
Q Consensus 18 F~~D~~~G~LP~vSfI~P~~~d~~~~~~nD~HP~------~~va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~gGfyD 91 (309)
-.+.+++..=+.+.|+.-..+|.. -+|-. ..+..=|..|.+++++|.. +++||||= +||. |
T Consensus 268 ale~L~~~~~~~fvfvn~~~~D~~-----~GH~~~~~~y~~ale~~D~~lg~ll~~L~~-----~tlliiTa-DHG~--d 334 (394)
T PRK05362 268 TIEEMKEAGDNGLVFTNLVDFDSL-----YGHRRDVAGYAAALEEFDARLPELLAALKE-----DDLLIITA-DHGN--D 334 (394)
T ss_pred HHHHHHhCCCCcEEEEecccCccc-----cCCcCCHHHHHHHHHHHHHHHHHHHHHhcc-----CCEEEEeC-CCCC--C
Confidence 344444222377888763322211 12422 1455668889999999863 68888883 3442 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccCCCCCccceEEecCCCCCCeeecCCCCCCCCcccchhhHHHHHHHHhCCCC
Q 046829 92 HVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILVSPWIKPGTVLHGPSGPHPTSQFEHSSIAATLKKIFNLKE 167 (309)
Q Consensus 92 HV~pP~~~~p~pdg~~g~~p~~f~fd~lG~RVP~ivISPw~k~G~V~h~~~g~~~st~ydHtSILrTIE~~fGL~~ 167 (309)
|.. .+. +..+.|||+|+.+|-++ |.+.. ..-.+.-|..||-+++|++.
T Consensus 335 ----~t~--------~gt-------~HT~e~VPlIi~gp~v~-~~~l~--------~~~sl~DI~pTia~l~Gv~~ 382 (394)
T PRK05362 335 ----PTW--------PGT-------DHTREYVPLLVYGPKFK-GGSLG--------HRETFADIGATIADNFGVEP 382 (394)
T ss_pred ----CCC--------CCC-------CCCCCceeEEEEECCCC-ccEEC--------CCCEehhHHHHHHHHcCcCC
Confidence 110 010 12357999999999876 43332 23478999999999999983
No 16
>PRK10649 hypothetical protein; Provisional
Probab=86.26 E-value=2.6 Score=44.20 Aligned_cols=91 Identities=15% Similarity=0.268 Sum_probs=57.4
Q ss_pred ChHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCCC-ccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCccceEEec-C
Q 046829 53 DIAQGQQLVKEIYEALRASPQWNETLFLIIYDEHGG-FYDHVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILVS-P 130 (309)
Q Consensus 53 ~va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~gG-fyDHV~pP~~~~p~pdg~~g~~p~~f~fd~lG~RVP~ivIS-P 130 (309)
.|..-|..|+++++.|.++ .++|+||. +=+||. +||- +. .+..|-.. ..+...+.|||+|+-+ |
T Consensus 432 sI~y~D~~l~~ii~~Lk~~--~~nt~iiy-~SDHGe~~~~~---~~------~~~lG~~~--~~~~~~~~~VP~ii~~s~ 497 (577)
T PRK10649 432 ANLYNDHVVASLIKDFKAT--DPNGFLVY-FSDHGEEVYDT---PP------HKTQGRNE--DNPTRHMYTIPFLLWTSE 497 (577)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEE-ECCCCcccccC---Cc------ccccCCCC--CCCCcccceecEEEEECH
Confidence 5778899999999999986 36777655 555654 3321 00 01111000 0011348899999985 5
Q ss_pred CCC-------CCeeecCCCCCCCCcccchhhHHHHHHHHhCCC
Q 046829 131 WIK-------PGTVLHGPSGPHPTSQFEHSSIAATLKKIFNLK 166 (309)
Q Consensus 131 w~k-------~G~V~h~~~g~~~st~ydHtSILrTIE~~fGL~ 166 (309)
-.+ ++.+ ...+.|..|+.|+-++.|++
T Consensus 498 ~~~~~~~~~~~~~~---------~~~~s~~Dl~~Tll~laGi~ 531 (577)
T PRK10649 498 KWQAAHPRDFSQDV---------DRKYSLAELIHTWSDLAGLS 531 (577)
T ss_pred HHHhhCchhhhhhh---------cCCeeHHhHHHHHHHHcCCC
Confidence 221 1112 24689999999999999997
No 17
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=86.05 E-value=3.6 Score=43.21 Aligned_cols=96 Identities=13% Similarity=0.216 Sum_probs=56.7
Q ss_pred ChHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCCC-ccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCccceEEec-C
Q 046829 53 DIAQGQQLVKEIYEALRASPQWNETLFLIIYDEHGG-FYDHVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILVS-P 130 (309)
Q Consensus 53 ~va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~gG-fyDHV~pP~~~~p~pdg~~g~~p~~f~fd~lG~RVP~ivIS-P 130 (309)
.|..-|..|+++++.|++ ++|+||++ -+||. +.+|- +..+. ++ ..+...|.|||+|+.. +
T Consensus 437 sI~ytD~~lg~ii~~Lk~----~nTivIy~-SDHGe~lge~~--~lhg~----------~~-~~~~~~~~~VPliv~~s~ 498 (558)
T PRK11560 437 SVLYVDHFISSVIDQLRD----KKAIVFYA-ADHGESINERE--HLHGT----------PR-EMAPPEQFRVPMMVWMSD 498 (558)
T ss_pred HHHHHHHHHHHHHHHHHh----cCeEEEEE-cCCCCcCCCCc--ccCCC----------Cc-ccCCccCeeeCEEEEEcc
Confidence 466789999999999987 47876665 55654 33431 11110 11 1122358999999884 2
Q ss_pred -CCC-CCe-eec--CCCCCCCCcccchhhHHHHHHHHhCCC
Q 046829 131 -WIK-PGT-VLH--GPSGPHPTSQFEHSSIAATLKKIFNLK 166 (309)
Q Consensus 131 -w~k-~G~-V~h--~~~g~~~st~ydHtSILrTIE~~fGL~ 166 (309)
|.+ ++. ++. -..+...+..+.|..|.-||-..+|++
T Consensus 499 ~~~~~p~~~~~~~~l~~~~~~~~~~s~~dlf~TlL~~~gv~ 539 (558)
T PRK11560 499 KYLANPDNAQAFAQLKKQADMKVPRRHVELFDTILGCLGYT 539 (558)
T ss_pred ccccCCccchhHHHhccccccCCceeehhHHHHHHHHcCCC
Confidence 211 110 000 001111124689999999999999998
No 18
>KOG3867 consensus Sulfatase [General function prediction only]
Probab=85.96 E-value=2.8 Score=43.90 Aligned_cols=97 Identities=24% Similarity=0.202 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCCCccCCCCCCCCCCCCCCCCCCCCCcccccC--CCCCccceEEecC
Q 046829 53 DIAQGQQLVKEIYEALRASPQWNETLFLIIYDEHGGFYDHVPTPVTGVPSPDDIVGPEPFFFKFD--RLGVRVPAILVSP 130 (309)
Q Consensus 53 ~va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~gGfyDHV~pP~~~~p~pdg~~g~~p~~f~fd--~lG~RVP~ivISP 130 (309)
.|..=|+.|++++++|...--+++|+|+.|-|-++-. -+...-.+..++... .... ..|+|+|.++.+|
T Consensus 274 ~V~~mD~~VG~ildaL~~~gl~nnTiv~FtSDnG~~~--------~~~~~~~~~n~~~~g-~~~~~weggir~~~~~~~p 344 (528)
T KOG3867|consen 274 MVSEMDWSVGRILDALDDLGLANNTLVIFTSDNGGPL--------EGGRGNGGSNGPWNG-IKKPGWEGGIRVPGLARWP 344 (528)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCeEEEEeCCCCccc--------cCccccccccCCccc-eecCCccccCCCcchhcCc
Confidence 5777899999999999999999999999999976521 111100111121110 0000 2599999999999
Q ss_pred C-CCCCeeecCCCCCCCCcccchhhHHHHHHHHhCCC
Q 046829 131 W-IKPGTVLHGPSGPHPTSQFEHSSIAATLKKIFNLK 166 (309)
Q Consensus 131 w-~k~G~V~h~~~g~~~st~ydHtSILrTIE~~fGL~ 166 (309)
- ++.|.|.+.+ ..-.-++=||-++.|++
T Consensus 345 ~~~~~g~v~~e~--------~s~~D~~PTl~~lag~~ 373 (528)
T KOG3867|consen 345 GVVPAGQVSNEL--------TSLLDILPTLADLAGGP 373 (528)
T ss_pred cccccceecccc--------ccccccchHHHHHcCCC
Confidence 4 5677887643 22334566777777766
No 19
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=85.55 E-value=2.5 Score=39.34 Aligned_cols=79 Identities=23% Similarity=0.332 Sum_probs=52.6
Q ss_pred ChHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCccceEEecCCC
Q 046829 53 DIAQGQQLVKEIYEALRASPQWNETLFLIIYDEHGGFYDHVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILVSPWI 132 (309)
Q Consensus 53 ~va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~gGfyDHV~pP~~~~p~pdg~~g~~p~~f~fd~lG~RVP~ivISPw~ 132 (309)
-+..=|.+|+++++++.. ++.+||||=| |-.+|.... . ..-...||+++++|.+
T Consensus 166 ~ie~~D~~l~~l~~~~~~----~~~~liiTaD-------Hg~~~~~~~------~---------~Ht~~~VPll~~g~~~ 219 (252)
T PF01676_consen 166 AIERIDRFLGRLLEALDK----EDDLLIITAD-------HGNDETMGH------T---------SHTREPVPLLIYGPGV 219 (252)
T ss_dssp HHHHHHHHHHHHHHHHHH----TTEEEEEEES-------SBSTTTSBS------S---------S-B-B-EEEEEECTTE
T ss_pred HHHHHHHHHHHHHHHHhc----CCCEEEEECC-------CCCccccCC------c---------CCCCceEEEEEEeCCC
Confidence 355668899999999954 4678888854 433232210 0 1235689999999988
Q ss_pred CCCeeecCCCCCCCCcccchhhHHHHHHHHhCCC
Q 046829 133 KPGTVLHGPSGPHPTSQFEHSSIAATLKKIFNLK 166 (309)
Q Consensus 133 k~G~V~h~~~g~~~st~ydHtSILrTIE~~fGL~ 166 (309)
+.+.+.. .-+..-|-.||-+++|++
T Consensus 220 ~~~~~~~---------~~~~~di~~ti~~~~G~~ 244 (252)
T PF01676_consen 220 RGDSVGE---------FGELADIAPTILELLGLE 244 (252)
T ss_dssp EE-SC-S---------TSBCGHHHHHHHHHHTGG
T ss_pred ccCccCc---------CCEEehHHHHHHHHcCCC
Confidence 8666542 346788999999999987
No 20
>PRK12383 putative mutase; Provisional
Probab=84.30 E-value=3.7 Score=41.65 Aligned_cols=109 Identities=15% Similarity=0.237 Sum_probs=63.7
Q ss_pred HHHHHhcCCCCCeEEEccccccccCCCCCCCCCC---CChHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCCCccCCCC
Q 046829 18 FKRHCKEGKLPNYVVIEPRYFDLLSLAANDDHPK---HDIAQGQQLVKEIYEALRASPQWNETLFLIIYDEHGGFYDHVP 94 (309)
Q Consensus 18 F~~D~~~G~LP~vSfI~P~~~d~~~~~~nD~HP~---~~va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~gGfyDHV~ 94 (309)
..+.++++. +.|.|+.=...|. .+++.-+. .-+..=|..|.+++++|. ++++||||=| ||.
T Consensus 278 ~l~aL~~~~-~dlvfvnl~~~D~---~GH~~d~~~y~~aiE~iD~~lg~ll~~L~-----~~~lliITaD-HG~------ 341 (406)
T PRK12383 278 TLDEFNTHP-TAFICTNIQETDL---AGHAEDVARYAERLEVVDRNLARLLEAMT-----PDDCLVVMAD-HGN------ 341 (406)
T ss_pred HHHHHhcCC-CCEEEEeccCCcc---ccccCCHHHHHHHHHHHHHHHHHHHHHhc-----cCCEEEEEcC-CCC------
Confidence 344455443 5777776222221 11111121 135556888999998886 3678888733 332
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCCccceEEecCCCCCCeeecCCCCCCCCcccchhhHHHHHHHHhCCC
Q 046829 95 TPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILVSPWIKPGTVLHGPSGPHPTSQFEHSSIAATLKKIFNLK 166 (309)
Q Consensus 95 pP~~~~p~pdg~~g~~p~~f~fd~lG~RVP~ivISPw~k~G~V~h~~~g~~~st~ydHtSILrTIE~~fGL~ 166 (309)
+|..+ +. +....+||+|+.+|-++++.+. ..-....|..||-+++|++
T Consensus 342 d~~~~--------~t-------~HTre~VPlLi~gp~i~~~~lg---------~~~slaDIapTIl~~~Gv~ 389 (406)
T PRK12383 342 DPTIG--------HS-------HHTREVVPLLVYQKGLQATQLG---------VRTTLSDVGATVCEFFGAP 389 (406)
T ss_pred CCCCC--------Cc-------CCCCcceEEEEEECCcccccCC---------CCcEEhhHHHHHHHHcCCC
Confidence 22110 00 1125699999999987653222 1236789999999999998
No 21
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=80.38 E-value=7.6 Score=40.45 Aligned_cols=88 Identities=19% Similarity=0.320 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCC------CccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCccceE
Q 046829 53 DIAQGQQLVKEIYEALRASPQWNETLFLIIYDEHG------GFYDHVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAI 126 (309)
Q Consensus 53 ~va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~g------GfyDHV~pP~~~~p~pdg~~g~~p~~f~fd~lG~RVP~i 126 (309)
.|..-|.+|+++++.|++.+. +|+||++= +|| |.|-|-.| +... -..+.|||++
T Consensus 409 sI~ytD~~l~~ii~~Lk~~~~--~t~iIy~S-DHGe~lge~g~~~hg~p----------------~~~~-~~~~~~VP~i 468 (522)
T PRK09598 409 TIFYNDYLLDKIISMLKNLKQ--PALMIYLS-DHGESLGEGAFYLHGIP----------------KSIA-PKEQYEIPFI 468 (522)
T ss_pred HHHHHHHHHHHHHHHHHhCCC--CeEEEEEc-cCccccccCCcccCCCC----------------cCCC-ccccccccEE
Confidence 467789999999999998766 88876664 444 22333210 0000 1237899999
Q ss_pred EecCC-CCCCe-eecCCCCCCCCcccchhhHHHHHHHHhCCC
Q 046829 127 LVSPW-IKPGT-VLHGPSGPHPTSQFEHSSIAATLKKIFNLK 166 (309)
Q Consensus 127 vISPw-~k~G~-V~h~~~g~~~st~ydHtSILrTIE~~fGL~ 166 (309)
+-.|- .+++. ... ....+.|-.|..||-.++|+.
T Consensus 469 i~~s~~~~~~~~~~~------~~~~~S~ddif~TlL~l~gv~ 504 (522)
T PRK09598 469 VWASDSFKKQHSIIQ------TQTPINQNVIFHSVLGVFDFK 504 (522)
T ss_pred EEEChhhhhhchhhh------cCCCchHHHHHHHHHHHcCCC
Confidence 87543 23321 000 124689999999999999997
No 22
>cd00016 alkPPc Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity.
Probab=67.99 E-value=31 Score=34.60 Aligned_cols=98 Identities=17% Similarity=0.170 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCCCccCCCCCCCCCCCCCCC------CCCCCCc---cc---ccCCCC
Q 046829 53 DIAQGQQLVKEIYEALRASPQWNETLFLIIYDEHGGFYDHVPTPVTGVPSPDD------IVGPEPF---FF---KFDRLG 120 (309)
Q Consensus 53 ~va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~gGfyDHV~pP~~~~p~pdg------~~g~~p~---~f---~fd~lG 120 (309)
.+.+-|..|+.+++.+. .+++|+||||=|=..|+ --+..+..+.+..+. .....|+ .| .-..-|
T Consensus 275 ~l~~~D~av~~~l~~l~---~~~dTLiIvTADHg~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~Htg 350 (384)
T cd00016 275 ETLAFDDAVEAALDFAK---KDGDTLVVVTADHSHGG-TILGYAGRGNPILGLADAPELDVDGLPYTTLTYANTTGTHGG 350 (384)
T ss_pred HHHHHHHHHHHHHHHhh---CCCCeEEEEECCCCCCc-cccCCCCCCCcccccccccccccCCCCceEEEecCCCCCCcC
Confidence 46667888998998887 47899999998755432 111111111000000 0000011 01 112348
Q ss_pred CccceEEecCCCCCCeeecCCCCCCCCcccchhhHHHHHHHHhCC
Q 046829 121 VRVPAILVSPWIKPGTVLHGPSGPHPTSQFEHSSIAATLKKIFNL 165 (309)
Q Consensus 121 ~RVP~ivISPw~k~G~V~h~~~g~~~st~ydHtSILrTIE~~fGL 165 (309)
.-||.++..|++.. ++ ..+|.+-|-..|.+.++|
T Consensus 351 ~~Vpv~a~Gp~a~~---f~--------g~~ent~I~~~i~~al~~ 384 (384)
T cd00016 351 EDVPVFAYGPGSHL---FR--------GVMENTEIAHVMAYALGL 384 (384)
T ss_pred ceeeEEeecCCccc---cC--------cceecHHHHHHHHHHhcC
Confidence 88999999998862 32 267888999999888775
No 23
>PRK05434 phosphoglyceromutase; Provisional
Probab=64.00 E-value=42 Score=35.12 Aligned_cols=80 Identities=21% Similarity=0.256 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCCCc---cCCCCCCCCCCCCCCCCCCCCCcccccCCCCCccceEEec
Q 046829 53 DIAQGQQLVKEIYEALRASPQWNETLFLIIYDEHGGF---YDHVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILVS 129 (309)
Q Consensus 53 ~va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~gGf---yDHV~pP~~~~p~pdg~~g~~p~~f~fd~lG~RVP~ivIS 129 (309)
-|..=|..|++++++|.+... +|||| =+||.. +|+-. +. +.. ..-+.+||+|+.+
T Consensus 413 AIe~vD~~LGrll~aLk~~g~----ivIIT-ADHGn~e~m~d~~t----g~----------~~~---~HT~~~VPlII~~ 470 (507)
T PRK05434 413 AVEAVDECLGRVVDAVLKVGG----TLLIT-ADHGNAEQMIDPET----GQ----------PHT---AHTTNPVPFILVG 470 (507)
T ss_pred HHHHHHHHHHHHHHHHHhCCC----EEEEE-cCCCcccccccCCC----CC----------ccc---CCCCeeeEEEEEE
Confidence 466668899999999977643 55555 666642 12210 00 100 1236899999998
Q ss_pred CCCCCCeeecCCCCCCCCcccchhhHHHHHHHHhCCC
Q 046829 130 PWIKPGTVLHGPSGPHPTSQFEHSSIAATLKKIFNLK 166 (309)
Q Consensus 130 Pw~k~G~V~h~~~g~~~st~ydHtSILrTIE~~fGL~ 166 (309)
|- .+.. ..-.+..|..||-+++|++
T Consensus 471 p~----~i~~--------~~~sL~DIaPTIL~LlGi~ 495 (507)
T PRK05434 471 GK----ALRL--------EGGKLADIAPTILDLLGLE 495 (507)
T ss_pred CC----cccC--------CCccHHHHHHHHHHHhCcC
Confidence 84 1110 1236789999999999997
No 24
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=60.57 E-value=45 Score=34.95 Aligned_cols=112 Identities=16% Similarity=0.166 Sum_probs=61.9
Q ss_pred HHHHHhcCCCCCeEEEccccccccCCCCCCCCCC------CChHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCCCccC
Q 046829 18 FKRHCKEGKLPNYVVIEPRYFDLLSLAANDDHPK------HDIAQGQQLVKEIYEALRASPQWNETLFLIIYDEHGGFYD 91 (309)
Q Consensus 18 F~~D~~~G~LP~vSfI~P~~~d~~~~~~nD~HP~------~~va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~gGfyD 91 (309)
..+.+++++ |.|.++.---.|. -+|-. ..|..=|..|++++++|.+... +||| .=+||+.-+
T Consensus 373 ~i~~I~~~k-~dfi~vnfan~Dm------vGHtg~~~a~v~AIE~vD~~LGrIl~aLke~G~----~VIi-TADHGnae~ 440 (501)
T TIGR01307 373 VLEAIAQGK-FDLIVVNFANPDM------VGHTGNFEAAIKAVEALDVCLGRIVEACKKVGG----TLFL-TADHGNAEE 440 (501)
T ss_pred HHHHHhccC-CCEEEEECCCccc------ccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC----EEEE-EcCCCChhh
Confidence 445555543 7777776211111 12322 1455668899999999986543 3444 455664211
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccCCCCCccceEEecCCCCCCeeecCCCCCCCCcccchhhHHHHHHHHhCCC
Q 046829 92 HVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILVSPWIKPGTVLHGPSGPHPTSQFEHSSIAATLKKIFNLK 166 (309)
Q Consensus 92 HV~pP~~~~p~pdg~~g~~p~~f~fd~lG~RVP~ivISPw~k~G~V~h~~~g~~~st~ydHtSILrTIE~~fGL~ 166 (309)
-.. +.|. +.. ..-+.|||+|+++|-..+ .+. ..-....|..||-+++|++
T Consensus 441 m~d--------~~g~----p~t---~HT~~~VP~Ii~~p~~i~-~~~---------~~~sL~DIaPTiLdL~Gi~ 490 (501)
T TIGR01307 441 MID--------ENGN----PHT---AHTTNPVPFVCVGAKNVK-LIR---------EGGVLADIAPTILDLMGLE 490 (501)
T ss_pred ccC--------CCCC----ccc---CCCCeEeeEEEEECCccc-ccC---------CCceEhHHHHHHHHHhCcC
Confidence 100 0110 000 123789999999982111 111 1125788999999999997
No 25
>COG1368 MdoB Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]
Probab=54.87 E-value=37 Score=36.09 Aligned_cols=95 Identities=16% Similarity=0.274 Sum_probs=61.2
Q ss_pred ChHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCccceEEecCCC
Q 046829 53 DIAQGQQLVKEIYEALRASPQWNETLFLIIYDEHGGFYDHVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILVSPWI 132 (309)
Q Consensus 53 ~va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~gGfyDHV~pP~~~~p~pdg~~g~~p~~f~fd~lG~RVP~ivISPw~ 132 (309)
.+..-|+.+++.++-+.+++.|++|+||++= ||-++............|- . +..+ .--|||.++..|-+
T Consensus 459 ~~~y~D~al~~F~~~lkk~~~~~~sviv~~G-------DH~~~~~~~~~~~~~~~~~-~--~~~~-~~~~vP~~i~~~g~ 527 (650)
T COG1368 459 AVHYADEALGQFIDKLKKSGLYKNSVIVLYG-------DHYGISGNQNLAMPKFLGK-S--YDID-MLQRVPLLIHAPGI 527 (650)
T ss_pred hhhhHHHHHHHHHHHHHhcCCCCCcEEEEEC-------CCCCcchhhhhhhhhhccc-c--cchh-HHhcCCeEEEcCCC
Confidence 3677899999999999999999999999852 5543221100000000110 0 0000 13489999999988
Q ss_pred CCCeeecCCCCCCCCcccchhhHHHHHHHHhCCC
Q 046829 133 KPGTVLHGPSGPHPTSQFEHSSIAATLKKIFNLK 166 (309)
Q Consensus 133 k~G~V~h~~~g~~~st~ydHtSILrTIE~~fGL~ 166 (309)
+..... ++...|--|.-||..+.|++
T Consensus 528 ~~~~~~--------~~~~~qidi~pTil~l~gi~ 553 (650)
T COG1368 528 KNKKKI--------DTVGGQLDIAPTILGLLGIS 553 (650)
T ss_pred Cccccc--------cccccccchhhHHHHHcCCC
Confidence 874222 13556888999999999986
No 26
>KOG3731 consensus Sulfatases [Carbohydrate transport and metabolism]
Probab=54.39 E-value=24 Score=36.79 Aligned_cols=84 Identities=23% Similarity=0.444 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHcCcCCCCeEEEEEEecCCCccCCCCCCCCCCCCCCCC-CC-CCCcccccCCCCCccceEEecCCCCCC
Q 046829 58 QQLVKEIYEALRASPQWNETLFLIIYDEHGGFYDHVPTPVTGVPSPDDI-VG-PEPFFFKFDRLGVRVPAILVSPWIKPG 135 (309)
Q Consensus 58 d~fv~~v~~aL~~SP~W~~TlIiITyDE~gGfyDHV~pP~~~~p~pdg~-~g-~~p~~f~fd~lG~RVP~ivISPw~k~G 135 (309)
|.-|..+|+.|..--+-++|.||-|=|- | | |.- . =|. .| ..| |.| -.|||++|-||-+++|
T Consensus 283 d~sve~l~n~l~elgeLdnTyivytsDh-G-y--hlG----q----fgl~kgks~p--yEf---diRVPf~iRgP~v~~~ 345 (541)
T KOG3731|consen 283 DDSVERLYNLLGELGELDNTYIVYTSDH-G-Y--HLG----Q----FGLWKGKSMP--YEF---DIRVPFLIRGPGVAPN 345 (541)
T ss_pred HHHHHHHHHHHHHhhcccceEEEEEcCC-c-c--ccc----c----cccccCCCCc--eeE---eeeeeEEeeCCCCCcc
Confidence 5568888888888888889999998764 2 2 211 0 011 11 113 333 4899999999999999
Q ss_pred eeecCCCCCCCCcccchhhHHHHHHHHhCCC
Q 046829 136 TVLHGPSGPHPTSQFEHSSIAATLKKIFNLK 166 (309)
Q Consensus 136 ~V~h~~~g~~~st~ydHtSILrTIE~~fGL~ 166 (309)
.+.+.- -.-.-+--||-++-||+
T Consensus 346 ~~~~~I--------v~niDlaPTilDiAGlp 368 (541)
T KOG3731|consen 346 KTVNEI--------VLNIDLAPTILDIAGLP 368 (541)
T ss_pred ccchhh--------heeccccchhhhhcCCC
Confidence 887642 22334555666777766
No 27
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=48.36 E-value=1.1e+02 Score=31.27 Aligned_cols=118 Identities=24% Similarity=0.388 Sum_probs=71.9
Q ss_pred cccccCchHHHHHHHhcCCCCCeEEEccccccccCCCCCCCCCC------CChHHHHHHHHHHHHHHHcCcCCCCeEEEE
Q 046829 8 IDNFHQFDVSFKRHCKEGKLPNYVVIEPRYFDLLSLAANDDHPK------HDIAQGQQLVKEIYEALRASPQWNETLFLI 81 (309)
Q Consensus 8 ~~~~~~~~~~F~~D~~~G~LP~vSfI~P~~~d~~~~~~nD~HP~------~~va~Gd~fv~~v~~aL~~SP~W~~TlIiI 81 (309)
.++-..+| ...+.++.-.-=.++|.+=--+| +.-+|=- .-+..=|..|.++++.|+. +-+|||
T Consensus 262 ~~n~~~~d-~tl~~~~~~~~~~~vFtNlVdfD-----~~yGHRrDv~gYa~aLe~FD~rL~e~~~~l~e-----dDlLii 330 (397)
T COG1015 262 VSNMDGMD-VTLEEMKTAEFNGLVFTNLVDFD-----SLYGHRRDVAGYAAALEEFDRRLPELIENLRE-----DDLLII 330 (397)
T ss_pred CCcHHHHH-HHHHHHhcCCCCcEEEEeeeecc-----cccccccchHHHHHHHHHHHHHHHHHHHhcCC-----CCEEEE
Confidence 34445555 45555553233377877622222 2233421 1355567788888888764 458888
Q ss_pred EEecCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCccceEEecCCCCCCeeecCCCCCCCCcccchhhHHHHHHH
Q 046829 82 IYDEHGGFYDHVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILVSPWIKPGTVLHGPSGPHPTSQFEHSSIAATLKK 161 (309)
Q Consensus 82 TyDE~gGfyDHV~pP~~~~p~pdg~~g~~p~~f~fd~lG~RVP~ivISPw~k~G~V~h~~~g~~~st~ydHtSILrTIE~ 161 (309)
|=|- |. =|+.+ |. |.-=-+||.|+.||-.|++.+-+. -+...|=+||.+
T Consensus 331 TADH-Gn------DPT~~--------gT-------dHTRE~iPvl~y~~~~k~~~lg~r---------~tfADiGaTvA~ 379 (397)
T COG1015 331 TADH-GN------DPTWG--------GT-------DHTREYIPVLVYGPGLKPGSLGTR---------ETFADIGATVAD 379 (397)
T ss_pred ecCC-CC------CCCCC--------CC-------CccccccceEEEcCCccCCccccc---------ccHHHHHHHHHH
Confidence 8653 31 13221 11 111347999999999999966542 356789999999
Q ss_pred HhCCCC
Q 046829 162 IFNLKE 167 (309)
Q Consensus 162 ~fGL~~ 167 (309)
+||+++
T Consensus 380 ~fgv~~ 385 (397)
T COG1015 380 NFGVSP 385 (397)
T ss_pred HhCCCC
Confidence 999986
No 28
>PRK10518 alkaline phosphatase; Provisional
Probab=46.76 E-value=93 Score=32.44 Aligned_cols=93 Identities=16% Similarity=0.218 Sum_probs=60.2
Q ss_pred ChHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecC-CCccCCCCCCCCCCCC-------CCCCCCCCCcccc--------c
Q 046829 53 DIAQGQQLVKEIYEALRASPQWNETLFLIIYDEH-GGFYDHVPTPVTGVPS-------PDDIVGPEPFFFK--------F 116 (309)
Q Consensus 53 ~va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~-gGfyDHV~pP~~~~p~-------pdg~~g~~p~~f~--------f 116 (309)
.+.+-|..|+.+++-...++ +||||||=|=. ++..-- |..+.|. .||. ++... -
T Consensus 368 E~~~fD~AV~~A~~~~~~~~---dTLVIVTADH~h~~~i~g---~~~~~~g~~~~~~~~dg~----~~~l~y~~g~g~s~ 437 (476)
T PRK10518 368 ETVDLDEAVQKALEFARKDG---NTLVIVTADHAHSSQIIA---PDAKAPGLTQALNTKDGA----VMVVSYGNSEEDSQ 437 (476)
T ss_pred HHHHHHHHHHHHHHHHhcCC---CeEEEEEccCCCcceecC---CCCCCCCcccccccCCCC----eeEEEeccCCCCCc
Confidence 45566778888888888775 89999998843 432221 2222221 0111 11111 1
Q ss_pred CCCCCccceEEecCCCCCCeeecCCCCCCCCcccchhhHHHHHHHHhCCC
Q 046829 117 DRLGVRVPAILVSPWIKPGTVLHGPSGPHPTSQFEHSSIAATLKKIFNLK 166 (309)
Q Consensus 117 d~lG~RVP~ivISPw~k~G~V~h~~~g~~~st~ydHtSILrTIE~~fGL~ 166 (309)
..-|.-||.+...||+.. ++ ..||.+.|...|.+.++|.
T Consensus 438 ~HtG~dV~v~A~GP~A~~---f~--------G~~eqt~if~~m~~Al~~~ 476 (476)
T PRK10518 438 EHTGTQLRIAAYGPHAAN---VV--------GLTDQTDLFYTMKDALGLK 476 (476)
T ss_pred CcCCceeEEEecCCcccc---cc--------cceeccHHHHHHHHHhCCC
Confidence 345888999999998875 22 3688999999999988873
No 29
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=44.14 E-value=22 Score=35.54 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=30.0
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCeee
Q 046829 240 LLKTMNVGGGLSYVEDAFKKFFDEGKKARENGADESEVVL 279 (309)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (309)
..+.||..| +++-++.|.+|++.|+++|.|.=+|--
T Consensus 135 ~pr~mt~~e----I~~ii~~f~~AA~rA~~AGFDgVEIH~ 170 (363)
T COG1902 135 TPRELTEEE----IEEVIEDFARAARRAKEAGFDGVEIHG 170 (363)
T ss_pred CCccCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEee
Confidence 577888888 455667999999999999999988765
No 30
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=41.76 E-value=24 Score=34.86 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=29.4
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCeee
Q 046829 240 LLKTMNVGGGLSYVEDAFKKFFDEGKKARENGADESEVVL 279 (309)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (309)
..+.||.+|-. +-++.|.++++.|+++|.|.=+|-.
T Consensus 145 ~p~~mt~~eI~----~ii~~f~~AA~rA~~AGfDGVEIh~ 180 (362)
T PRK10605 145 TPRALELEEIP----GIVNDFRQAIANAREAGFDLVELHS 180 (362)
T ss_pred CCccCCHHHHH----HHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 35779998855 4556899999999999999988753
No 31
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=39.41 E-value=1.9e+02 Score=30.98 Aligned_cols=129 Identities=21% Similarity=0.256 Sum_probs=66.2
Q ss_pred HHHHHHhcCCCCCeEEEccccccccCCCCCCCCCCC------ChHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCCCcc
Q 046829 17 SFKRHCKEGKLPNYVVIEPRYFDLLSLAANDDHPKH------DIAQGQQLVKEIYEALRASPQWNETLFLIIYDEHGGFY 90 (309)
Q Consensus 17 ~F~~D~~~G~LP~vSfI~P~~~d~~~~~~nD~HP~~------~va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~gGfy 90 (309)
...+.+++++ ..|.+++=--.|. -+|-.. -|..=|..|++++++++.. +.+||||=| ||+.=
T Consensus 411 ~~i~~i~~~~-ydfi~vNfan~Dm------vGHtG~~ea~ikAIE~vD~~Lg~Il~al~~~----g~~liITAD-HGNaE 478 (558)
T PLN02538 411 KARDALLSGK-FDQVRVNLANGDM------VGHTGDLEATIVACEAVDAAVKEILDAVEQV----GGIYLVTAD-HGNAE 478 (558)
T ss_pred HHHHHHhcCC-CCEEEEeccCccc------ccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc----CCEEEEeCC-CCCch
Confidence 3556666655 5566665111111 234321 3555688899999999632 267788765 44321
Q ss_pred CCCCCCCCCCC--CCCCCCCCCCcccccCCCCCccceEEecCCCCCCeeecCCCCCCCCcccchhhHHHHHHHHhCCCC
Q 046829 91 DHVPTPVTGVP--SPDDIVGPEPFFFKFDRLGVRVPAILVSPWIKPGTVLHGPSGPHPTSQFEHSSIAATLKKIFNLKE 167 (309)
Q Consensus 91 DHV~pP~~~~p--~pdg~~g~~p~~f~fd~lG~RVP~ivISPw~k~G~V~h~~~g~~~st~ydHtSILrTIE~~fGL~~ 167 (309)
+=..+=..+.| +++|..- +.. ..-..-||.|+++|-++++...... . ..-.-..|-.||-+++||+.
T Consensus 479 ~M~d~~~~G~p~~~~~Gtp~--~~t---~HT~npVP~Ii~g~~~~~~~~l~~~---l--~~~gLaDVApTIL~lLGl~~ 547 (558)
T PLN02538 479 DMVKRDKSGKPLLDKDGNPQ--ILT---SHTLAPVPVAIGGPGLPPGVRFRDD---L--PTAGLANVAATVMNLHGFEA 547 (558)
T ss_pred hhccccccCCccccccCCCC--CCC---CCCCCCcCEEEEeCCcccCcccccC---c--cCCcHHhHHHHHHHHhCCCC
Confidence 10000001111 1112110 000 1125679999999977665332110 0 00126789999999999983
No 32
>KOG2125 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=39.10 E-value=1.1e+02 Score=33.73 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHcCcCCCCeEEEEEEec----CCCccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCccceEEec
Q 046829 54 IAQGQQLVKEIYEALRASPQWNETLFLIIYDE----HGGFYDHVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAILVS 129 (309)
Q Consensus 54 va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE----~gGfyDHV~pP~~~~p~pdg~~g~~p~~f~fd~lG~RVP~ivIS 129 (309)
..+=|..++.+++-++.+..-.+|+++|++|- +|+ |.- ..+ .-.++|.+.++
T Consensus 220 LkEmDeiv~~I~~~~~~~~s~d~tllil~gDHGM~e~Gn---HGG------------ss~---------~ET~s~l~~~~ 275 (760)
T KOG2125|consen 220 LKEMDEIVKRIHDYLMEHRSGDQTLLILCGDHGMTESGN---HGG------------SSP---------GETSSPLLFLL 275 (760)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEEEccccccccCC---CCC------------CCc---------ccccccEEEEe
Confidence 45567789999998888888779999998873 332 311 111 14689999999
Q ss_pred CCCCCCeeecCCCCCCCCcccchhhHHHHHHHHhCCC
Q 046829 130 PWIKPGTVLHGPSGPHPTSQFEHSSIAATLKKIFNLK 166 (309)
Q Consensus 130 Pw~k~G~V~h~~~g~~~st~ydHtSILrTIE~~fGL~ 166 (309)
|- -|--|..+++ ...+++.-+.-||-..||+|
T Consensus 276 ~N--~~~~d~~~a~---~~rv~QiDl~pTI~~llgvp 307 (760)
T KOG2125|consen 276 PN--SNISDWLAAG---LERVEQIDLAPTIALLLGVP 307 (760)
T ss_pred cC--CCCcccchhc---cchhhhhhhHHHHHHHhCCC
Confidence 81 1111111111 12466777777888888876
No 33
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=31.49 E-value=46 Score=31.57 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=29.4
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCeee
Q 046829 240 LLKTMNVGGGLSYVEDAFKKFFDEGKKARENGADESEVVL 279 (309)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (309)
..+.||..|-. +-++.|.++++.|+++|.|.=+|-.
T Consensus 127 ~~~~mt~~ei~----~~i~~~~~aA~~a~~aGfDgveih~ 162 (327)
T cd02803 127 PPREMTKEEIE----QIIEDFAAAARRAKEAGFDGVEIHG 162 (327)
T ss_pred CCCcCCHHHHH----HHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 56789998865 4456899999999999999888764
No 34
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=31.03 E-value=47 Score=32.90 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=28.9
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCeee
Q 046829 240 LLKTMNVGGGLSYVEDAFKKFFDEGKKARENGADESEVVL 279 (309)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (309)
..+.||..|-. +-++.|.++++.|+++|.|.=+|-.
T Consensus 136 ~p~~mt~~eI~----~ii~~f~~AA~ra~~aGfDgVEih~ 171 (370)
T cd02929 136 QAREMDKDDIK----RVRRWYVDAALRARDAGFDIVYVYA 171 (370)
T ss_pred CCccCCHHHHH----HHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 36779988854 4556888999999999999988754
No 35
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=29.96 E-value=50 Score=32.84 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=29.0
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCeee
Q 046829 240 LLKTMNVGGGLSYVEDAFKKFFDEGKKARENGADESEVVL 279 (309)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (309)
..+.||..|-. +-++.|.++++.|+++|.|.=+|-.
T Consensus 136 ~p~~mt~~eI~----~ii~~f~~AA~ra~~AGfDgVEih~ 171 (382)
T cd02931 136 TCRELTTEEVE----TFVGKFGESAVIAKEAGFDGVEIHA 171 (382)
T ss_pred CCCcCCHHHHH----HHHHHHHHHHHHHHHcCCCEEEEec
Confidence 35779988855 4557899999999999999977754
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=27.36 E-value=57 Score=35.30 Aligned_cols=30 Identities=13% Similarity=0.273 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCee
Q 046829 246 VGGGLSYVEDAFKKFFDEGKKARENGADESEVV 278 (309)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (309)
++=+..-|++-|.+||||| +|+|++|..+-
T Consensus 630 ~klsmarcrrNVdnFLeaC---RkiGVpEa~lC 659 (722)
T KOG0532|consen 630 PKLSMARCRRNVDNFLEAC---RKIGVPEADLC 659 (722)
T ss_pred chhHHHHHHHhHHHHHHHH---HHcCCChHhhc
Confidence 3445677899999999995 78999987664
No 37
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=26.10 E-value=1.3e+02 Score=31.89 Aligned_cols=58 Identities=26% Similarity=0.414 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHHHHHHHcCcCCCCeEEEEEEecCC------CccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCccceE
Q 046829 53 DIAQGQQLVKEIYEALRASPQWNETLFLIIYDEHG------GFYDHVPTPVTGVPSPDDIVGPEPFFFKFDRLGVRVPAI 126 (309)
Q Consensus 53 ~va~Gd~fv~~v~~aL~~SP~W~~TlIiITyDE~g------GfyDHV~pP~~~~p~pdg~~g~~p~~f~fd~lG~RVP~i 126 (309)
.|..-|.+|.+|++.|++... ..++|=+-+|| |.|.|-.| .. + .| .-..+||+|
T Consensus 424 tilYtD~~L~~vi~~Lk~~~~---~~~liY~SDHGEslgEn~~ylhg~p-~~-------~---ap------~~q~~VP~i 483 (555)
T COG2194 424 TILYTDYFLSKLIDQLKDKKD---NTSLIYFSDHGESLGENGPYLHGTP-YE-------I---AP------QEQYHVPFI 483 (555)
T ss_pred hhhhhHHHHHHHHHHHHhCCC---CeEEEEEcCccHhhccCCcccccCc-cc-------C---Cc------hhheeeeEE
Confidence 588899999999999999998 44555556665 56677432 10 0 00 126799999
Q ss_pred EecC
Q 046829 127 LVSP 130 (309)
Q Consensus 127 vISP 130 (309)
+-+.
T Consensus 484 ~w~S 487 (555)
T COG2194 484 VWSS 487 (555)
T ss_pred EEEC
Confidence 9744
No 38
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=24.94 E-value=81 Score=30.46 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=36.2
Q ss_pred hhhccchhhHHHHHHH-----HHHHHHHHHHHHHHcCCCCCCeeecC
Q 046829 240 LLKTMNVGGGLSYVED-----AFKKFFDEGKKARENGADESEVVLMP 281 (309)
Q Consensus 240 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (309)
+-..++.+|+.+++++ -..+++++|.+|.+.|+...+|+.-+
T Consensus 198 ~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~A~~~Gv~~v~ii~g~ 244 (265)
T COG0548 198 LISELDAEEAEELIEQGIITGGMIPKVEAALEALESGVRRVHIISGR 244 (265)
T ss_pred eeccCCHHHHHHHHhcCCccCccHHHHHHHHHHHHhCCCeEEEecCC
Confidence 6677889999999885 45789999999999999999998754
No 39
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=24.49 E-value=78 Score=30.98 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=29.0
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCeee
Q 046829 240 LLKTMNVGGGLSYVEDAFKKFFDEGKKARENGADESEVVL 279 (309)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (309)
..+.||..|-. +-+..|.++++.|+++|.|.=+|-.
T Consensus 138 ~p~~mt~~eI~----~ii~~f~~aA~~a~~aGfDgVeih~ 173 (338)
T cd02933 138 TPRALTTEEIP----GIVADFRQAARNAIEAGFDGVEIHG 173 (338)
T ss_pred CCCCCCHHHHH----HHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 46789988855 4556899999999999999988753
No 40
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=22.51 E-value=85 Score=30.67 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=27.8
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCe
Q 046829 240 LLKTMNVGGGLSYVEDAFKKFFDEGKKARENGADESEV 277 (309)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (309)
..+.||..|-. +-++.|.++++.|+++|.|.=+|
T Consensus 123 ~p~~mt~~eI~----~i~~~f~~aA~~a~~aGfDgVei 156 (353)
T cd02930 123 TPRELSEEEIE----QTIEDFARCAALAREAGYDGVEI 156 (353)
T ss_pred CCCCCCHHHHH----HHHHHHHHHHHHHHHcCCCEEEE
Confidence 35679988755 44567899999999999999888
No 41
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.82 E-value=88 Score=31.14 Aligned_cols=37 Identities=19% Similarity=0.056 Sum_probs=29.1
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeecC
Q 046829 241 LKTMNVGGGLSYVEDAFKKFFDEGKKARENGADESEVVLMP 281 (309)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (309)
.+.||..|-... ++.|.++++.|+++|.|.=+|-..-
T Consensus 131 p~~mt~~eI~~i----i~~f~~AA~~a~~aGfDgVeih~ah 167 (361)
T cd04747 131 GREMTEADIDDV----IAAFARAAADARRLGFDGIELHGAH 167 (361)
T ss_pred CccCCHHHHHHH----HHHHHHHHHHHHHcCCCEEEEeccc
Confidence 467888886544 4689999999999999988776533
No 42
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.37 E-value=91 Score=30.21 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=27.7
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCeee
Q 046829 241 LKTMNVGGGLSYVEDAFKKFFDEGKKARENGADESEVVL 279 (309)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (309)
.+.||.+|-.. -++.|.+++++|+++|.|.=+|-.
T Consensus 136 p~~mt~~eI~~----~i~~~~~aA~ra~~aGfDgVeih~ 170 (338)
T cd04733 136 PRAMTEEEIED----VIDRFAHAARLAQEAGFDGVQIHA 170 (338)
T ss_pred CCcCCHHHHHH----HHHHHHHHHHHHHHcCCCEEEEch
Confidence 56788877554 446889999999999999887743
No 43
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=20.85 E-value=74 Score=29.28 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHcCCCC---CCeeecCC
Q 046829 249 GLSYVEDAFKKFF--DEGKKARENGADE---SEVVLMPN 282 (309)
Q Consensus 249 ~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~ 282 (309)
|+.++.-+|++.| ++..++.++|.+. ++++.+..
T Consensus 42 ArAW~Dp~fk~~Ll~d~~aa~~elg~~g~~~~~~~~ven 80 (185)
T TIGR01323 42 AKAWVDPEFRALLLKDATAACAQFGYTGPQGEYIVALEN 80 (185)
T ss_pred hHHhcCHHHHHHHHhChHHHHHHcCCCCCCCceEEEEeC
Confidence 5667777788776 4444456688865 66776654
No 44
>PLN02377 3-ketoacyl-CoA synthase
Probab=20.60 E-value=1.8e+02 Score=30.44 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCchhhhhccchhhHHHHHHHHHHHHHHHHHHHHH-cCCCCCCe
Q 046829 215 EFQQELVQLAAAVKGDLNSDFLPDDLLKTMNVGGGLSYVEDAFKKFFDEGKKARE-NGADESEV 277 (309)
Q Consensus 215 ~~Q~~l~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 277 (309)
+||+.+.+ ..|-.....+|..++..-...--..|.+++..-..+|+++|++ .|+++++|
T Consensus 135 ~f~~ri~~----~sgig~~t~~p~~~~~~~~~~~~~~~~~ea~~l~~~A~~~aL~kaGi~p~dI 194 (502)
T PLN02377 135 EFQRKILE----RSGLGEDTYVPEAMHYIPPRPSMAAAREEAEQVMFGALDNLFANTNVNPKDI 194 (502)
T ss_pred HHHHHHHH----hcCCCCccccCchhccCCccchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHC
Confidence 56655554 2344445666754443322223445667777888899999976 99988876
No 45
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=20.51 E-value=95 Score=30.41 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=28.9
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCeee
Q 046829 240 LLKTMNVGGGLSYVEDAFKKFFDEGKKARENGADESEVVL 279 (309)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (309)
..+.||..|-.. -++.|.++++.|+++|.|.=+|-.
T Consensus 130 ~p~~mt~~eI~~----ii~~f~~aA~~a~~aGfDgVeih~ 165 (353)
T cd04735 130 TPRELTHEEIED----IIDAFGEATRRAIEAGFDGVEIHG 165 (353)
T ss_pred CCccCCHHHHHH----HHHHHHHHHHHHHHcCCCEEEEcc
Confidence 356789888654 456899999999999999988764
No 46
>PLN02192 3-ketoacyl-CoA synthase
Probab=20.24 E-value=1.8e+02 Score=30.55 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCchhh---hhccchhhHHHHHHHHHHHHHHHHHHHHH-cCCCCCCee
Q 046829 214 SEFQQELVQLAAAVKGDLNSDFLPDDL---LKTMNVGGGLSYVEDAFKKFFDEGKKARE-NGADESEVV 278 (309)
Q Consensus 214 ~~~Q~~l~~~a~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 278 (309)
=+||..+.+ ..|-.....+|..+ ....|.++|.+-++ .-+.+|+++|++ .|+++++|=
T Consensus 138 ~~f~~~~~~----~sglg~~t~~p~~~~~~~~~~~~~~~~~Ea~---~~~~~Aa~~aL~kaGi~p~DID 199 (511)
T PLN02192 138 LEFQRKILE----RSGLGESTYLPEAVLNVPPNPCMAEARKEAE---TVMFGAIDQLLAKTSVKPKDIG 199 (511)
T ss_pred HHHHHHHHH----hcCCCCcccCChhhccCCCCccHHHHHHHHH---HHHHHHHHHHHHHcCCCHHHCC
Confidence 466766654 34555566667644 45667777776555 777888898986 899998763
Done!