Your job contains 1 sequence.
>046830
MMMEEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI
EIRPESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV
IKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMST
NHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYI
RTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQYIGKRGAT
VGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDH
YGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYS
LATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKPRQLHNSQWGMMCPAETPE
GQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 046830
(518 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2119013 - symbol:NRPB2 species:3702 "Arabidops... 2011 5.8e-208 1
DICTYBASE|DDB_G0288257 - symbol:rpb2 "RNA polymerase II c... 1421 1.1e-176 2
POMBASE|SPAC23G3.01 - symbol:rpb2 "RNA polymerase II comp... 1210 4.5e-152 2
UNIPROTKB|F1NCB0 - symbol:POLR2B "DNA-directed RNA polyme... 1428 3.5e-146 1
UNIPROTKB|A5PJW8 - symbol:POLR2B "DNA-directed RNA polyme... 1424 9.3e-146 1
UNIPROTKB|E2RNN5 - symbol:POLR2B "DNA-directed RNA polyme... 1424 9.3e-146 1
UNIPROTKB|C9J2Y9 - symbol:POLR2B "DNA-directed RNA polyme... 1424 9.3e-146 1
UNIPROTKB|P30876 - symbol:POLR2B "DNA-directed RNA polyme... 1424 9.3e-146 1
UNIPROTKB|I3LGP4 - symbol:POLR2B "DNA-directed RNA polyme... 1424 9.3e-146 1
MGI|MGI:2388280 - symbol:Polr2b "polymerase (RNA) II (DNA... 1424 9.3e-146 1
RGD|1309477 - symbol:Polr2b "polymerase (RNA) II (DNA dir... 1424 9.3e-146 1
UNIPROTKB|C9J4M6 - symbol:POLR2B "DNA-directed RNA polyme... 1422 1.5e-145 1
UNIPROTKB|F1P4F2 - symbol:POLR2B "DNA-directed RNA polyme... 1419 3.2e-145 1
ZFIN|ZDB-GENE-041008-1 - symbol:polr2b "polymerase (RNA) ... 1405 9.6e-144 1
FB|FBgn0262955 - symbol:RpII140 "RNA polymerase II 140kD ... 1393 1.8e-142 1
CGD|CAL0004145 - symbol:orf19.3349 species:5476 "Candida ... 1126 5.0e-140 2
UNIPROTKB|Q5A8Y5 - symbol:RPB140 "DNA-directed RNA polyme... 1126 5.0e-140 2
SGD|S000005677 - symbol:RPB2 "RNA polymerase II second la... 1115 7.4e-137 2
WB|WBGene00016140 - symbol:rpb-2 species:6239 "Caenorhabd... 1320 9.8e-135 1
ASPGD|ASPL0000039770 - symbol:AN9120 species:162425 "Emer... 1116 5.2e-134 2
GENEDB_PFALCIPARUM|PFB0715w - symbol:PFB0715w "DNA-direct... 1018 3.2e-121 2
UNIPROTKB|O96236 - symbol:PFB0715w "DNA-directed RNA poly... 1018 3.2e-121 2
ZFIN|ZDB-GENE-030131-2887 - symbol:polr3b "polymerase (RN... 662 3.6e-64 1
UNIPROTKB|F8VRE2 - symbol:POLR3B "DNA-directed RNA polyme... 647 2.0e-63 1
UNIPROTKB|F1SPQ0 - symbol:LOC100737037 "DNA-directed RNA ... 644 4.2e-63 1
UNIPROTKB|Q9NW08 - symbol:POLR3B "DNA-directed RNA polyme... 647 1.5e-62 1
UNIPROTKB|E1BRJ4 - symbol:POLR3B "DNA-directed RNA polyme... 646 2.0e-62 1
MGI|MGI:1917678 - symbol:Polr3b "polymerase (RNA) III (DN... 646 2.0e-62 1
RGD|1565311 - symbol:Polr3b "polymerase (RNA) III (DNA di... 646 2.0e-62 1
UNIPROTKB|E1BPX6 - symbol:POLR3B "Uncharacterized protein... 644 3.3e-62 1
UNIPROTKB|E2RHZ2 - symbol:POLR3B "DNA-directed RNA polyme... 644 3.3e-62 1
WB|WBGene00017300 - symbol:rpc-2 species:6239 "Caenorhabd... 635 3.3e-61 1
POMBASE|SPAC4G9.08c - symbol:rpc2 "DNA-directed RNA polym... 635 3.5e-61 1
CGD|CAL0002357 - symbol:orf19.5847 species:5476 "Candida ... 626 3.1e-60 1
FB|FBgn0004463 - symbol:RpIII128 "RNA polymerase III 128k... 616 3.5e-59 1
SGD|S000005733 - symbol:RET1 "Second-largest subunit of R... 614 6.0e-59 1
ASPGD|ASPL0000054387 - symbol:AN0321 species:162425 "Emer... 612 1.2e-58 1
DICTYBASE|DDB_G0288449 - symbol:rpc2 "RNA polymerase III,... 561 9.9e-57 2
GENEDB_PFALCIPARUM|PFL0330c - symbol:PFL0330c "DNA-direct... 376 9.5e-51 2
UNIPROTKB|Q8I5X9 - symbol:PFL0330c "DNA-directed RNA poly... 376 9.5e-51 2
TAIR|locus:2153323 - symbol:NRPC2 "nuclear RNA polymerase... 528 1.1e-49 1
TAIR|locus:2095233 - symbol:NRPD2A "nuclear RNA polymeras... 365 4.4e-39 2
ASPGD|ASPL0000012082 - symbol:AN3933 species:162425 "Emer... 189 1.2e-16 2
CGD|CAL0002109 - symbol:RPA135 species:5476 "Candida albi... 187 2.7e-16 2
WB|WBGene00008781 - symbol:rpoa-2 species:6239 "Caenorhab... 165 2.9e-15 2
SGD|S000006214 - symbol:RPA135 "RNA polymerase I second l... 169 1.2e-13 2
UNIPROTKB|F8VRU2 - symbol:POLR3B "DNA-directed RNA polyme... 181 3.7e-13 1
UNIPROTKB|F1NRJ5 - symbol:F1NRJ5 "Uncharacterized protein... 135 1.1e-11 2
POMBASE|SPBP23A10.07 - symbol:rpa2 "DNA-directed RNA poly... 142 1.4e-11 2
UNIPROTKB|F1NLV9 - symbol:F1NLV9 "DNA-directed RNA polyme... 135 2.2e-11 2
ZFIN|ZDB-GENE-040426-1598 - symbol:polr1b "polymerase (RN... 135 2.2e-11 2
UNIPROTKB|E2REX8 - symbol:POLR1B "DNA-directed RNA polyme... 125 2.5e-11 2
UNIPROTKB|C9JZW8 - symbol:POLR2B "DNA-directed RNA polyme... 164 2.6e-11 1
UNIPROTKB|A6QLS0 - symbol:POLR1B "DNA-directed RNA polyme... 121 5.3e-11 2
RGD|620822 - symbol:Polr1b "polymerase (RNA) I polypeptid... 122 3.5e-10 2
UNIPROTKB|O54888 - symbol:Polr1b "DNA-directed RNA polyme... 122 3.5e-10 2
DICTYBASE|DDB_G0293560 - symbol:rpa2 "RNA polymerase I, s... 149 1.4e-09 2
TIGR_CMR|BA_0102 - symbol:BA_0102 "DNA-directed RNA polym... 127 2.0e-09 3
UNIPROTKB|Q9H9Y6 - symbol:POLR1B "DNA-directed RNA polyme... 117 2.0e-09 2
GENEDB_PFALCIPARUM|PF11_0358 - symbol:PF11_0358 "DNA-dire... 116 2.1e-09 3
UNIPROTKB|Q8II17 - symbol:PF11_0358 "DNA-directed RNA pol... 116 2.1e-09 3
UNIPROTKB|F5GZX4 - symbol:POLR1B "DNA-directed RNA polyme... 117 2.1e-09 2
MGI|MGI:108014 - symbol:Polr1b "polymerase (RNA) I polype... 115 2.6e-09 2
TIGR_CMR|CHY_2318 - symbol:CHY_2318 "DNA-directed RNA pol... 130 4.1e-09 3
TAIR|locus:2019272 - symbol:NRPA2 "nuclear RNA polymerase... 133 9.5e-09 2
UNIPROTKB|C9JMN3 - symbol:POLR2B "DNA-directed RNA polyme... 134 4.5e-08 1
TIGR_CMR|ECH_0952 - symbol:ECH_0952 "DNA-directed RNA pol... 134 1.2e-06 3
TIGR_CMR|APH_1024 - symbol:APH_1024 "DNA-directed RNA pol... 137 2.3e-06 3
UNIPROTKB|F8VRS3 - symbol:POLR3B "DNA-directed RNA polyme... 118 2.4e-06 1
FB|FBgn0003278 - symbol:RpI135 "RNA polymerase I 135kD su... 143 4.5e-06 1
UNIPROTKB|F1SUA2 - symbol:POLR1B "DNA-directed RNA polyme... 143 4.7e-06 1
TIGR_CMR|CBU_0231 - symbol:CBU_0231 "DNA-directed RNA pol... 106 5.6e-06 3
UNIPROTKB|Q9KV30 - symbol:rpoB "DNA-directed RNA polymera... 111 9.4e-06 2
TIGR_CMR|VC_0328 - symbol:VC_0328 "DNA-directed RNA polym... 111 9.4e-06 2
TIGR_CMR|DET_0603 - symbol:DET_0603 "DNA-directed RNA pol... 119 1.7e-05 4
UNIPROTKB|P0A680 - symbol:rpoB "DNA-directed RNA polymera... 114 3.6e-05 2
TIGR_CMR|SO_0224 - symbol:SO_0224 "DNA-directed RNA polym... 110 3.9e-05 2
TIGR_CMR|GSU_2863 - symbol:GSU_2863 "DNA-directed RNA pol... 100 5.7e-05 2
UNIPROTKB|P0A8V2 - symbol:rpoB "RNA polymerase, beta subu... 104 6.6e-05 2
UNIPROTKB|P60281 - symbol:rpoB "DNA-directed RNA polymera... 114 7.1e-05 2
TIGR_CMR|CPS_4769 - symbol:CPS_4769 "DNA-directed RNA pol... 106 0.00012 3
>TAIR|locus:2119013 [details] [associations]
symbol:NRPB2 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0000394 "RNA splicing,
via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0009506
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006351 EMBL:AL161555 EMBL:AL035527 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 EMBL:Z19120 EMBL:Z19121 IPI:IPI00524372
PIR:T05846 RefSeq:NP_193902.1 UniGene:At.112
ProteinModelPortal:P38420 STRING:P38420 PaxDb:P38420 PRIDE:P38420
EnsemblPlants:AT4G21710.1 GeneID:828259 KEGG:ath:AT4G21710
TAIR:At4g21710 HOGENOM:HOG000218612 InParanoid:P38420 KO:K03010
OMA:IMIVFRA PhylomeDB:P38420 ProtClustDB:CLSN2685591
Genevestigator:P38420 GermOnline:AT4G21710 Uniprot:P38420
Length = 1188
Score = 2011 (713.0 bits), Expect = 5.8e-208, P = 5.8e-208
Identities = 398/469 (84%), Positives = 416/469 (88%)
Query: 76 FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV----- 130
F +IYLSKPMMTESDGETATLF KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV
Sbjct: 90 FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQD 149
Query: 131 ---------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTN 181
PIMLRSSYCTL+QNS+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTN
Sbjct: 150 FTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTN 209
Query: 182 HVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIR 241
HVYVFKKRQPNKYAYV EV SMAE+QNRPPST+FV ML+R SAKGGSSGQYI TLPYIR
Sbjct: 210 HVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARASAKGGSSGQYIRCTLPYIR 269
Query: 242 TEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ----QYIGKR 297
TEIPIII+FRALGF AD+DILEHICYDF DTQMMELLRPSLEEAF IQNQ YIGKR
Sbjct: 270 TEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQLVALDYIGKR 329
Query: 298 GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDD 357
GATVGVT+EK IKYA++ILQKEMLPHVG G+ CETKKAYYFG+IIHRLLLCALGRR EDD
Sbjct: 330 GATVGVTKEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDD 389
Query: 358 RDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGL 417
RDHYGNKRLDLAGPLLGGLFR LFRKLT DVRSYVQKCVDNGK+VNLQFAIKAKTIT GL
Sbjct: 390 RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGL 449
Query: 418 KYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLHNSQ 469
KYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++ KLAKPRQLHNSQ
Sbjct: 450 KYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 509
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
WGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPILEFLEEWGTENFE
Sbjct: 510 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 558
Score = 516 (186.7 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 107/119 (89%), Positives = 107/119 (89%)
Query: 21 AWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE-- 78
AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADIEIRPESQHNPG QSDFAE
Sbjct: 26 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 85
Query: 79 -------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 130
IYLSKPMMTESDGETATLF KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV
Sbjct: 86 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 144
>DICTYBASE|DDB_G0288257 [details] [associations]
symbol:rpb2 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 dictyBase:DDB_G0288257 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR GO:GO:0006366
EMBL:AAFI02000109 GO:GO:0003899 GO:GO:0005665 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA RefSeq:XP_636812.1 STRING:Q54J75 PRIDE:Q54J75
EnsemblProtists:DDB0216277 GeneID:8626529 KEGG:ddi:DDB_G0288257
ProtClustDB:CLSZ2429137 Uniprot:Q54J75
Length = 1170
Score = 1421 (505.3 bits), Expect = 1.1e-176, Sum P(2) = 1.1e-176
Identities = 284/470 (60%), Positives = 355/470 (75%)
Query: 76 FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVI----KKGHDGE--- 128
F +IYLSKP E DG + + AR+RNLTYSAPL+VD+TK V+ KG +
Sbjct: 88 FGQIYLSKPT-AEIDGVSQQVTPNQARIRNLTYSAPLFVDITKTVMTGSKSKGDERRTDE 146
Query: 129 --------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMST 180
+VPIMLRS YC L + + LT +GEC +D+GGYFIINGSEKVLIAQEKM+
Sbjct: 147 VLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQGGYFIINGSEKVLIAQEKMNN 206
Query: 181 NHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYI 240
NHVYVFKK P+KY+YVAE+ S E+ +RP ST+++ ML T+ G G I AT+PYI
Sbjct: 207 NHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTMYLKMLHNTNK--GPVG--IKATVPYI 262
Query: 241 RTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGK 296
+ ++P+II+FRALGF AD+DILEHICYDF+D QMM+L+RPSLEE+F IQ+Q+ Y+GK
Sbjct: 263 KQDVPVIIVFRALGFVADKDILEHICYDFKDAQMMDLMRPSLEESFVIQSQEVALDYLGK 322
Query: 297 RGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAED 356
RG+T+G TRE+ IK+A+E+LQKEMLPHV +F ETKKA+YFG+I HRLLL +L RR D
Sbjct: 323 RGSTMG-TREQRIKFAREVLQKEMLPHVSVAEFYETKKAFYFGYITHRLLLASLERRPLD 381
Query: 357 DRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGG 416
DRDH+ NKRLDLAGPLLG LFR LF+KLT DVR Y+Q+C+D K+ A+K+KTIT G
Sbjct: 382 DRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCIDKDKEFIASSAVKSKTITSG 441
Query: 417 LKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLHNS 468
LKYSLATGNWG + GT++GV+QVLN LT+AST ++ KLAKPRQLHN+
Sbjct: 442 LKYSLATGNWGSSKSGGTKSGVAQVLNRLTFASTLSHLRRLNTPIGREGKLAKPRQLHNT 501
Query: 469 QWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
WG++CP+ETPEGQACGLVKNLA+M YI++GSA+ PILEFLEEW TEN E
Sbjct: 502 HWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILEFLEEWTTENLE 551
Score = 317 (116.6 bits), Expect = 1.1e-176, Sum P(2) = 1.1e-176
Identities = 69/110 (62%), Positives = 81/110 (73%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQ--SD---- 75
W VISAYF+EKGLVRQQLDSFDEF QNTMQEI+DES I +RPESQH+PGQ S+
Sbjct: 24 WTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPESQHHPGQAVVSNNVST 83
Query: 76 ----FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVI 121
F +IYLSKP E DG + + AR+RNLTYSAPL+VD+TK V+
Sbjct: 84 FSVKFGQIYLSKPT-AEIDGVSQQVTPNQARIRNLTYSAPLFVDITKTVM 132
>POMBASE|SPAC23G3.01 [details] [associations]
symbol:rpb2 "RNA polymerase II complex subunit Rpb2"
species:4896 "Schizosaccharomyces pombe" [GO:0000775 "chromosome,
centromeric region" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IGI] [GO:0031048 "chromatin
silencing by small RNA" evidence=IMP] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IGI] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PomBase:SPAC23G3.01 PANTHER:PTHR20856 GO:GO:0005829
EMBL:CU329670 GO:GO:0000775 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0003723 GO:GO:0000790 GO:GO:0006366
GO:GO:0031048 GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:3H0G
PDBsum:3H0G KO:K03010 OMA:IMIVFRA HOGENOM:HOG000222962 EMBL:D13337
PIR:S35548 PIR:T50175 RefSeq:NP_593101.2 ProteinModelPortal:Q02061
IntAct:Q02061 MINT:MINT-1214536 STRING:Q02061
EnsemblFungi:SPAC23G3.01.1 GeneID:2541446 KEGG:spo:SPAC23G3.01
OrthoDB:EOG45HW5D EvolutionaryTrace:Q02061 NextBio:20802548
Uniprot:Q02061
Length = 1210
Score = 1210 (431.0 bits), Expect = 4.5e-152, Sum P(2) = 4.5e-152
Identities = 236/403 (58%), Positives = 301/403 (74%)
Query: 129 EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKK 188
++PIMLRS++C L S L +L ECPYD+GGYFIINGSEKV+IAQE+ + N V VFKK
Sbjct: 154 KIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSEKVIIAQERSAANIVQVFKK 213
Query: 189 RQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIII 248
P+ AYVAE+ S E +R S++ + +++R + +SGQ I ATLPYIR++IPI+I
Sbjct: 214 AAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTE---NSGQTIRATLPYIRSDIPIVI 270
Query: 249 LFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVT 304
+FRALG D DILEHICYD D QM+E+++P +EEAF IQ++ YIGKRG+T GVT
Sbjct: 271 VFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEAFVIQDKDIALDYIGKRGSTTGVT 330
Query: 305 REKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNK 364
REK ++YA +ILQKE+LPH+ T + ET+KA++ G++IHR+LLCAL RR DDRDH+G K
Sbjct: 331 REKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIHRMLLCALERREPDDRDHFGKK 390
Query: 365 RLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATG 424
RLDLAGPLL LFR LFRK+T DV Y+QKCV+ ++ NL A+K+ IT GL+YSLATG
Sbjct: 391 RLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVETNREFNLTLAVKSNIITNGLRYSLATG 450
Query: 425 NWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLHNSQWGMMCP 475
NWG Q + R GVSQVLN T+AST ++ KLAKPRQLHN+ WGM+CP
Sbjct: 451 NWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGMVCP 510
Query: 476 AETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
AETPEGQACGLVKNL+LM Y+++GS + PI+EFLEEWG E E
Sbjct: 511 AETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEEWGLETLE 553
Score = 295 (108.9 bits), Expect = 4.5e-152, Sum P(2) = 4.5e-152
Identities = 70/155 (45%), Positives = 94/155 (60%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD------ 75
W VIS++FEE L RQQL SFDEF QNTMQEIVD+ + + + +QH G Q D
Sbjct: 18 WTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHT-GAQGDVTRRYE 76
Query: 76 --FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIM 133
F +IYLS+P MTE+DG T T+F + ARLRNLTYS+PLYVD+ K+V+ VPI
Sbjct: 77 INFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSN--VPIG 134
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYF-IING 167
+ ++ + + +G+ P F I+NG
Sbjct: 135 -EEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNG 168
>UNIPROTKB|F1NCB0 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 GeneTree:ENSGT00690000102234
EMBL:AADN02009110 EMBL:AADN02009111 IPI:IPI00823005
Ensembl:ENSGALT00000037965 ArrayExpress:F1NCB0 Uniprot:F1NCB0
Length = 1174
Score = 1428 (507.7 bits), Expect = 3.5e-146, P = 3.5e-146
Identities = 296/479 (61%), Positives = 346/479 (72%)
Query: 65 ESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKG 124
E + P F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G
Sbjct: 77 EVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEG 136
Query: 125 HDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIA 174
D + +PIMLRS+YC L + + L EL ECP D GGYFIINGSEKVLIA
Sbjct: 137 EDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIA 196
Query: 175 QEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQY 232
QEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R AK + GQ
Sbjct: 197 QEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQR 255
Query: 233 IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ 292
I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF IQ Q
Sbjct: 256 IVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQN 315
Query: 293 ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLC 348
+IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++HRLLL
Sbjct: 316 VALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 375
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAI 408
ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD NL+ AI
Sbjct: 376 ALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAI 435
Query: 409 KAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKL 459
K + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++ KL
Sbjct: 436 KTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKL 495
Query: 460 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
AKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 496 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 554
Score = 349 (127.9 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 84/218 (38%), Positives = 127/218 (58%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD------ 75
W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E+QH G+ +
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGEVEEPPRYLL 86
Query: 76 -FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIML 134
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G D ++
Sbjct: 87 KFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGED--QLQTQH 144
Query: 135 RSSYC----TLYQNSQ---KALTELGECPYDE----GGYFIINGSEKVLIAQEKMSTNHV 183
+ ++ + +++ LT+ C +E G + I + ++ ++ +
Sbjct: 145 QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNT 204
Query: 184 YVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
++ +KYAY E S E+ +RP STI+V ML+R
Sbjct: 205 VYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLAR 242
>UNIPROTKB|A5PJW8 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:DAAA02017743
EMBL:BC142267 IPI:IPI00701366 RefSeq:NP_001092552.1
UniGene:Bt.103151 STRING:A5PJW8 Ensembl:ENSBTAT00000025800
GeneID:538184 KEGG:bta:538184 InParanoid:A5PJW8 NextBio:20877300
Uniprot:A5PJW8
Length = 1174
Score = 1424 (506.3 bits), Expect = 9.3e-146, P = 9.3e-146
Identities = 295/479 (61%), Positives = 346/479 (72%)
Query: 65 ESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKG 124
E + P F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G
Sbjct: 77 EVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEG 136
Query: 125 HDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIA 174
+ + +PIMLRS+YC L + + L EL ECP D GGYFIINGSEKVLIA
Sbjct: 137 EEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIA 196
Query: 175 QEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQY 232
QEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R AK + GQ
Sbjct: 197 QEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQR 255
Query: 233 IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ 292
I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF IQ Q
Sbjct: 256 IVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQN 315
Query: 293 ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLC 348
+IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++HRLLL
Sbjct: 316 VALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 375
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAI 408
ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD NL+ AI
Sbjct: 376 ALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAI 435
Query: 409 KAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKL 459
K + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++ KL
Sbjct: 436 KTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKL 495
Query: 460 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
AKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 496 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 554
Score = 348 (127.6 bits), Expect = 6.0e-29, P = 6.0e-29
Identities = 84/218 (38%), Positives = 127/218 (58%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD------ 75
W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E+QH G+ +
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLL 86
Query: 76 -FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIML 134
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G E++
Sbjct: 87 KFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGE--EQLQTQH 144
Query: 135 RSSYC----TLYQNSQ---KALTELGECPYDE----GGYFIINGSEKVLIAQEKMSTNHV 183
+ ++ + +++ LT+ C +E G + I + ++ ++ +
Sbjct: 145 QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNT 204
Query: 184 YVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
++ +KYAY E S E+ +RP STI+V ML+R
Sbjct: 205 VYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLAR 242
>UNIPROTKB|E2RNN5 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0004672 "protein
kinase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:AAEX03009093 RefSeq:XP_532382.2 ProteinModelPortal:E2RNN5
Ensembl:ENSCAFT00000003641 GeneID:475152 KEGG:cfa:475152
Uniprot:E2RNN5
Length = 1174
Score = 1424 (506.3 bits), Expect = 9.3e-146, P = 9.3e-146
Identities = 295/479 (61%), Positives = 346/479 (72%)
Query: 65 ESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKG 124
E + P F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G
Sbjct: 77 EVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEG 136
Query: 125 HDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIA 174
+ + +PIMLRS+YC L + + L EL ECP D GGYFIINGSEKVLIA
Sbjct: 137 EEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIA 196
Query: 175 QEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQY 232
QEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R AK + GQ
Sbjct: 197 QEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQR 255
Query: 233 IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ 292
I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF IQ Q
Sbjct: 256 IVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQN 315
Query: 293 ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLC 348
+IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++HRLLL
Sbjct: 316 VALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 375
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAI 408
ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD NL+ AI
Sbjct: 376 ALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAI 435
Query: 409 KAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKL 459
K + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++ KL
Sbjct: 436 KTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKL 495
Query: 460 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
AKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 496 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 554
Score = 348 (127.6 bits), Expect = 6.0e-29, P = 6.0e-29
Identities = 84/218 (38%), Positives = 127/218 (58%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD------ 75
W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E+QH G+ +
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLL 86
Query: 76 -FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIML 134
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G E++
Sbjct: 87 KFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGE--EQLQTQH 144
Query: 135 RSSYC----TLYQNSQ---KALTELGECPYDE----GGYFIINGSEKVLIAQEKMSTNHV 183
+ ++ + +++ LT+ C +E G + I + ++ ++ +
Sbjct: 145 QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNT 204
Query: 184 YVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
++ +KYAY E S E+ +RP STI+V ML+R
Sbjct: 205 VYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLAR 242
>UNIPROTKB|C9J2Y9 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HGNC:HGNC:9188 IPI:IPI00894141 ProteinModelPortal:C9J2Y9
STRING:C9J2Y9 Ensembl:ENST00000441246 ArrayExpress:C9J2Y9
Bgee:C9J2Y9 Uniprot:C9J2Y9
Length = 1167
Score = 1424 (506.3 bits), Expect = 9.3e-146, P = 9.3e-146
Identities = 295/479 (61%), Positives = 346/479 (72%)
Query: 65 ESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKG 124
E + P F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G
Sbjct: 70 EVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEG 129
Query: 125 HDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIA 174
+ + +PIMLRS+YC L + + L EL ECP D GGYFIINGSEKVLIA
Sbjct: 130 EEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIA 189
Query: 175 QEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQY 232
QEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R AK + GQ
Sbjct: 190 QEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQR 248
Query: 233 IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ 292
I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF IQ Q
Sbjct: 249 IVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQN 308
Query: 293 ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLC 348
+IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++HRLLL
Sbjct: 309 VALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 368
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAI 408
ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD NL+ AI
Sbjct: 369 ALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAI 428
Query: 409 KAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKL 459
K + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++ KL
Sbjct: 429 KTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKL 488
Query: 460 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
AKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 489 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 547
Score = 348 (127.6 bits), Expect = 5.9e-29, P = 5.9e-29
Identities = 84/218 (38%), Positives = 127/218 (58%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD------ 75
W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E+QH G+ +
Sbjct: 20 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLL 79
Query: 76 -FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIML 134
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G E++
Sbjct: 80 KFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGE--EQLQTQH 137
Query: 135 RSSYC----TLYQNSQ---KALTELGECPYDE----GGYFIINGSEKVLIAQEKMSTNHV 183
+ ++ + +++ LT+ C +E G + I + ++ ++ +
Sbjct: 138 QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNT 197
Query: 184 YVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
++ +KYAY E S E+ +RP STI+V ML+R
Sbjct: 198 VYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLAR 235
>UNIPROTKB|P30876 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase II subunit RPB2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004672 "protein kinase activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 Reactome:REACT_116125 GO:GO:0016032 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 EMBL:CH471057
GO:GO:0006368 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006370 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
HOGENOM:HOG000222962 EMBL:X63563 EMBL:AK289823 EMBL:BC023503
EMBL:AF055028 IPI:IPI00027808 PIR:S28976 RefSeq:NP_000929.1
UniGene:Hs.602757 ProteinModelPortal:P30876 DIP:DIP-32910N
IntAct:P30876 MINT:MINT-1216897 STRING:P30876 PhosphoSite:P30876
DMDM:401012 PaxDb:P30876 PeptideAtlas:P30876 PRIDE:P30876
Ensembl:ENST00000314595 Ensembl:ENST00000381227 GeneID:5431
KEGG:hsa:5431 UCSC:uc003hcl.1 CTD:5431 GeneCards:GC04P057760
HGNC:HGNC:9188 HPA:HPA037506 MIM:180661 neXtProt:NX_P30876
PharmGKB:PA33508 HOVERGEN:HBG017744 InParanoid:P30876
OrthoDB:EOG4JQ3WQ PhylomeDB:P30876 GenomeRNAi:5431 NextBio:21013
ArrayExpress:P30876 Bgee:P30876 CleanEx:HS_POLR2B
Genevestigator:P30876 GermOnline:ENSG00000047315 Uniprot:P30876
Length = 1174
Score = 1424 (506.3 bits), Expect = 9.3e-146, P = 9.3e-146
Identities = 295/479 (61%), Positives = 346/479 (72%)
Query: 65 ESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKG 124
E + P F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G
Sbjct: 77 EVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEG 136
Query: 125 HDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIA 174
+ + +PIMLRS+YC L + + L EL ECP D GGYFIINGSEKVLIA
Sbjct: 137 EEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIA 196
Query: 175 QEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQY 232
QEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R AK + GQ
Sbjct: 197 QEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQR 255
Query: 233 IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ 292
I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF IQ Q
Sbjct: 256 IVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQN 315
Query: 293 ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLC 348
+IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++HRLLL
Sbjct: 316 VALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 375
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAI 408
ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD NL+ AI
Sbjct: 376 ALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAI 435
Query: 409 KAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKL 459
K + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++ KL
Sbjct: 436 KTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKL 495
Query: 460 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
AKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 496 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 554
Score = 348 (127.6 bits), Expect = 6.0e-29, P = 6.0e-29
Identities = 84/218 (38%), Positives = 127/218 (58%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD------ 75
W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E+QH G+ +
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLL 86
Query: 76 -FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIML 134
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G E++
Sbjct: 87 KFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGE--EQLQTQH 144
Query: 135 RSSYC----TLYQNSQ---KALTELGECPYDE----GGYFIINGSEKVLIAQEKMSTNHV 183
+ ++ + +++ LT+ C +E G + I + ++ ++ +
Sbjct: 145 QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNT 204
Query: 184 YVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
++ +KYAY E S E+ +RP STI+V ML+R
Sbjct: 205 VYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLAR 242
>UNIPROTKB|I3LGP4 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:FP476021 EMBL:CU984592 RefSeq:XP_003129085.2 UniGene:Ssc.55326
Ensembl:ENSSSCT00000023257 GeneID:397001 KEGG:ssc:397001
Uniprot:I3LGP4
Length = 1167
Score = 1424 (506.3 bits), Expect = 9.3e-146, P = 9.3e-146
Identities = 295/479 (61%), Positives = 346/479 (72%)
Query: 65 ESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKG 124
E + P F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G
Sbjct: 70 EVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEG 129
Query: 125 HDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIA 174
+ + +PIMLRS+YC L + + L EL ECP D GGYFIINGSEKVLIA
Sbjct: 130 EEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIA 189
Query: 175 QEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQY 232
QEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R AK + GQ
Sbjct: 190 QEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQR 248
Query: 233 IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ 292
I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF IQ Q
Sbjct: 249 IVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQN 308
Query: 293 ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLC 348
+IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++HRLLL
Sbjct: 309 VALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 368
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAI 408
ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD NL+ AI
Sbjct: 369 ALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAI 428
Query: 409 KAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKL 459
K + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++ KL
Sbjct: 429 KTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKL 488
Query: 460 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
AKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 489 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 547
Score = 348 (127.6 bits), Expect = 5.9e-29, P = 5.9e-29
Identities = 84/218 (38%), Positives = 127/218 (58%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD------ 75
W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E+QH G+ +
Sbjct: 20 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLL 79
Query: 76 -FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIML 134
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G E++
Sbjct: 80 KFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGE--EQLQTQH 137
Query: 135 RSSYC----TLYQNSQ---KALTELGECPYDE----GGYFIINGSEKVLIAQEKMSTNHV 183
+ ++ + +++ LT+ C +E G + I + ++ ++ +
Sbjct: 138 QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNT 197
Query: 184 YVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
++ +KYAY E S E+ +RP STI+V ML+R
Sbjct: 198 VYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLAR 235
>MGI|MGI:2388280 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC;ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:2388280 PANTHER:PTHR20856 GO:GO:0046872
GO:GO:0003677 GO:GO:0003682 GO:GO:0004672 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:BC038472 IPI:IPI00320034
RefSeq:NP_722493.2 UniGene:Mm.273217 ProteinModelPortal:Q8CFI7
DIP:DIP-57023N IntAct:Q8CFI7 STRING:Q8CFI7 PhosphoSite:Q8CFI7
PaxDb:Q8CFI7 PRIDE:Q8CFI7 Ensembl:ENSMUST00000031167 GeneID:231329
KEGG:mmu:231329 UCSC:uc008xwe.2 InParanoid:Q8CFI7 ChiTaRS:POLR2B
NextBio:380519 Bgee:Q8CFI7 CleanEx:MM_POLR2B Genevestigator:Q8CFI7
GermOnline:ENSMUSG00000029250 Uniprot:Q8CFI7
Length = 1174
Score = 1424 (506.3 bits), Expect = 9.3e-146, P = 9.3e-146
Identities = 295/479 (61%), Positives = 346/479 (72%)
Query: 65 ESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKG 124
E + P F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G
Sbjct: 77 EVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEG 136
Query: 125 HDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIA 174
+ + +PIMLRS+YC L + + L EL ECP D GGYFIINGSEKVLIA
Sbjct: 137 EEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIA 196
Query: 175 QEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQY 232
QEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R AK + GQ
Sbjct: 197 QEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQR 255
Query: 233 IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ 292
I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF IQ Q
Sbjct: 256 IVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQN 315
Query: 293 ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLC 348
+IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++HRLLL
Sbjct: 316 VALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 375
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAI 408
ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD NL+ AI
Sbjct: 376 ALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAI 435
Query: 409 KAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKL 459
K + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++ KL
Sbjct: 436 KTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKL 495
Query: 460 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
AKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 496 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 554
Score = 348 (127.6 bits), Expect = 6.0e-29, P = 6.0e-29
Identities = 84/218 (38%), Positives = 127/218 (58%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD------ 75
W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E+QH G+ +
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLL 86
Query: 76 -FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIML 134
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G E++
Sbjct: 87 KFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGE--EQLQTQH 144
Query: 135 RSSYC----TLYQNSQ---KALTELGECPYDE----GGYFIINGSEKVLIAQEKMSTNHV 183
+ ++ + +++ LT+ C +E G + I + ++ ++ +
Sbjct: 145 QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNT 204
Query: 184 YVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
++ +KYAY E S E+ +RP STI+V ML+R
Sbjct: 205 VYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLAR 242
>RGD|1309477 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed) polypeptide B"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA;ISO] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA;ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1309477 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 GeneTree:ENSGT00690000102234 CTD:5431
EMBL:CH473981 RefSeq:NP_001099472.1 UniGene:Rn.153952
Ensembl:ENSRNOT00000039252 GeneID:289561 KEGG:rno:289561
NextBio:629984 Uniprot:G3V8Y5
Length = 1174
Score = 1424 (506.3 bits), Expect = 9.3e-146, P = 9.3e-146
Identities = 295/479 (61%), Positives = 346/479 (72%)
Query: 65 ESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKG 124
E + P F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G
Sbjct: 77 EVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEG 136
Query: 125 HDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIA 174
+ + +PIMLRS+YC L + + L EL ECP D GGYFIINGSEKVLIA
Sbjct: 137 EEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIA 196
Query: 175 QEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQY 232
QEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R AK + GQ
Sbjct: 197 QEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQR 255
Query: 233 IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ 292
I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF IQ Q
Sbjct: 256 IVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQN 315
Query: 293 ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLC 348
+IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++HRLLL
Sbjct: 316 VALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 375
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAI 408
ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD NL+ AI
Sbjct: 376 ALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAI 435
Query: 409 KAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKL 459
K + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++ KL
Sbjct: 436 KTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKL 495
Query: 460 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
AKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 496 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 554
Score = 348 (127.6 bits), Expect = 6.0e-29, P = 6.0e-29
Identities = 84/218 (38%), Positives = 127/218 (58%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD------ 75
W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E+QH G+ +
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLL 86
Query: 76 -FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIML 134
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G E++
Sbjct: 87 KFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGE--EQLQTQH 144
Query: 135 RSSYC----TLYQNSQ---KALTELGECPYDE----GGYFIINGSEKVLIAQEKMSTNHV 183
+ ++ + +++ LT+ C +E G + I + ++ ++ +
Sbjct: 145 QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNT 204
Query: 184 YVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
++ +KYAY E S E+ +RP STI+V ML+R
Sbjct: 205 VYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLAR 242
>UNIPROTKB|C9J4M6 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HGNC:HGNC:9188 IPI:IPI00873948 STRING:C9J4M6
Ensembl:ENST00000431623 UCSC:uc011caf.1 ArrayExpress:C9J4M6
Bgee:C9J4M6 Uniprot:C9J4M6
Length = 1099
Score = 1422 (505.6 bits), Expect = 1.5e-145, P = 1.5e-145
Identities = 293/468 (62%), Positives = 343/468 (73%)
Query: 76 FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE------ 129
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G + +
Sbjct: 13 FEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKT 72
Query: 130 ----VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYV 185
+PIMLRS+YC L + + L EL ECP D GGYFIINGSEKVLIAQEKM+TN VYV
Sbjct: 73 FIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYV 132
Query: 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHATLPYIRTE 243
F K+ +KYAY E S E+ +RP STI+V ML+R AK + GQ I ATLPYI+ E
Sbjct: 133 FAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQE 191
Query: 244 IPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGA 299
+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF IQ Q +IG RGA
Sbjct: 192 VPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGA 251
Query: 300 TVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRD 359
GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++HRLLL ALGRR DDRD
Sbjct: 252 KPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRD 311
Query: 360 HYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKY 419
HYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD NL+ AIK + I+ GLKY
Sbjct: 312 HYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKY 371
Query: 420 SLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLHNSQW 470
SLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKPRQLHN+ W
Sbjct: 372 SLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLW 431
Query: 471 GMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 432 GMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 479
>UNIPROTKB|F1P4F2 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:AADN02009110
EMBL:AADN02009111 IPI:IPI00580164 Ensembl:ENSGALT00000018572
ArrayExpress:F1P4F2 Uniprot:F1P4F2
Length = 1176
Score = 1419 (504.6 bits), Expect = 3.2e-145, P = 3.2e-145
Identities = 296/480 (61%), Positives = 346/480 (72%)
Query: 65 ESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKG 124
E + P F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G
Sbjct: 78 EVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEG 137
Query: 125 HDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIA 174
D + +PIMLRS+YC L + + L EL ECP D GGYFIINGSEKVLIA
Sbjct: 138 EDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIA 197
Query: 175 QEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQY 232
QEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R AK + GQ
Sbjct: 198 QEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQR 256
Query: 233 IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ 292
I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF IQ Q
Sbjct: 257 IVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQN 316
Query: 293 ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGH-IIHRLLL 347
+IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+ ++HRLLL
Sbjct: 317 VALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYYMVHRLLL 376
Query: 348 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA 407
ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD NL+ A
Sbjct: 377 AALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELA 436
Query: 408 IKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWK 458
IK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++ K
Sbjct: 437 IKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGK 496
Query: 459 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 497 LAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 556
Score = 349 (127.9 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 84/218 (38%), Positives = 127/218 (58%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD------ 75
W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E+QH G+ +
Sbjct: 28 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGEVEEPPRYLL 87
Query: 76 -FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIML 134
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G D ++
Sbjct: 88 KFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGED--QLQTQH 145
Query: 135 RSSYC----TLYQNSQ---KALTELGECPYDE----GGYFIINGSEKVLIAQEKMSTNHV 183
+ ++ + +++ LT+ C +E G + I + ++ ++ +
Sbjct: 146 QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNT 205
Query: 184 YVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
++ +KYAY E S E+ +RP STI+V ML+R
Sbjct: 206 VYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLAR 243
>ZFIN|ZDB-GENE-041008-1 [details] [associations]
symbol:polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-041008-1
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102234 EMBL:AL954718 EMBL:CABZ01048450
EMBL:CABZ01048451 IPI:IPI00944344 Ensembl:ENSDART00000124865
ArrayExpress:F1QXY8 Bgee:F1QXY8 Uniprot:F1QXY8
Length = 1117
Score = 1405 (499.6 bits), Expect = 9.6e-144, P = 9.6e-144
Identities = 288/479 (60%), Positives = 343/479 (71%)
Query: 65 ESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKG 124
E + P F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +IK G
Sbjct: 77 EVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDG 136
Query: 125 HDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIA 174
+ ++ +PIMLRS+YC L + + L EL ECP D GGYFIINGSEKVLIA
Sbjct: 137 EEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVLIA 196
Query: 175 QEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQY 232
QEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V M++R K + GQ
Sbjct: 197 QEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMMARGGQGVKKSAIGQR 255
Query: 233 IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ 292
I +TLPYIR E+PIII+FRALGF +D DILEHI YDF D +MME+++PSL+EAF IQ Q
Sbjct: 256 IVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQN 315
Query: 293 ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLC 348
+IG RGA GVT+E+ IKYAKE+LQKE+LPHVG DFCETKKAY+ G+++HRLLL
Sbjct: 316 VALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETKKAYFLGYMVHRLLLA 375
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAI 408
ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L ++R Y QK +D GKD NL+ AI
Sbjct: 376 ALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFNLELAI 435
Query: 409 KAKTITGGLKYSLATGNWGQGNAAG-TRAGVSQVLNCLTYASTFTYYL--------SWKL 459
K + I+ GLKYSLATGNWG A RAGVSQVLN LT+AST ++ KL
Sbjct: 436 KTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKL 495
Query: 460 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
AKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 496 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 554
Score = 346 (126.9 bits), Expect = 9.6e-29, P = 9.6e-29
Identities = 81/216 (37%), Positives = 123/216 (56%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD------ 75
W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E+QH G+ +
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEEPPRYLL 86
Query: 76 -FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIML 134
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +IK G + ++
Sbjct: 87 KFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDGEEQQQTQHQK 146
Query: 135 R--SSYCTLYQNSQ---KALTELGECPYDE----GGYFIINGSEKVLIAQEKMSTNHVYV 185
+ +++ LT+ C +E G + I + ++ ++ +
Sbjct: 147 TFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 206
Query: 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
++ +KYAY E S E+ +RP STI+V M++R
Sbjct: 207 VFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMMAR 242
>FB|FBgn0262955 [details] [associations]
symbol:RpII140 "RNA polymerase II 140kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=ISS;NAS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS;NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:AE014297 GO:GO:0046872
GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:X05709
EMBL:BT003265 EMBL:M62972 PIR:A27826 RefSeq:NP_476706.1
UniGene:Dm.6926 ProteinModelPortal:P08266 DIP:DIP-17498N
MINT:MINT-1578011 STRING:P08266 PaxDb:P08266
EnsemblMetazoa:FBtr0082892 GeneID:41721 KEGG:dme:Dmel_CG3180
CTD:41721 FlyBase:FBgn0262955 InParanoid:P08266 OrthoDB:EOG4G1JX8
PhylomeDB:P08266 ChiTaRS:RpII140 GenomeRNAi:41721 NextBio:825231
Bgee:P08266 GermOnline:CG3180 Uniprot:P08266
Length = 1176
Score = 1393 (495.4 bits), Expect = 1.8e-142, P = 1.8e-142
Identities = 289/468 (61%), Positives = 337/468 (72%)
Query: 76 FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE------ 129
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +G D E
Sbjct: 89 FEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKT 148
Query: 130 ----VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYV 185
+PIMLRS+YC L Q + + LTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYV
Sbjct: 149 FIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYV 208
Query: 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSA--KGGSSGQYIHATLPYIRTE 243
F + KYA+ E+ S E +RP ST++V M++R S K + GQ I A LPYI+ E
Sbjct: 209 FSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQE 267
Query: 244 IPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGA 299
IPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF +Q Q +IG RGA
Sbjct: 268 IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNFIGARGA 327
Query: 300 TVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRD 359
GVT++K IKYAKEILQKEMLPHVG DFCETKKAY+ G+++HRLLL +LGRR DDRD
Sbjct: 328 RPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRD 387
Query: 360 HYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKY 419
HYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK IT GL+Y
Sbjct: 388 HYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRY 447
Query: 420 SLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLHNSQW 470
SLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKPRQLHN+ W
Sbjct: 448 SLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLW 507
Query: 471 GMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 508 GMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 555
Score = 320 (117.7 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 81/218 (37%), Positives = 118/218 (54%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD------ 75
W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S IE++ E+QH G+
Sbjct: 28 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSL 87
Query: 76 -FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIML 134
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +G D E
Sbjct: 88 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQK 147
Query: 135 R--SSYCTLYQNSQKALTELGECPYDE-------GGYFIINGSEKVLIAQEKMSTNHVYV 185
+ +++ L++L + E G + I + ++ ++ +
Sbjct: 148 TFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 207
Query: 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS 223
+ KYA+ E+ S E +RP ST++V M++R S
Sbjct: 208 VFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGS 245
>CGD|CAL0004145 [details] [associations]
symbol:orf19.3349 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 1126 (401.4 bits), Expect = 5.0e-140, Sum P(2) = 5.0e-140
Identities = 223/403 (55%), Positives = 295/403 (73%)
Query: 129 EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKK 188
+VPIMLRS +C L ++ EL ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK
Sbjct: 163 KVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKK 222
Query: 189 RQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIII 248
P+ ++VAE+ S E +R S++ + + R G SG+ I ATLPYI+ +IPI+I
Sbjct: 223 AAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRDEK--GVSGRTIKATLPYIKEDIPIVI 280
Query: 249 LFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVT 304
+FRALG D DILEHICYD D QM+E+L+P +EE F IQ ++ +IG+RG +G+
Sbjct: 281 VFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIR 339
Query: 305 REKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNK 364
REK I+YAK+ILQKE+LP++ + ET+KA++ G++++RLLLCAL R+ DDRDH+G K
Sbjct: 340 REKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKK 399
Query: 365 RLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATG 424
RLDLAGPLL LFR LF+KLT D+ +Y+Q+CV+NG D N+ A+K++TIT GL+YSLATG
Sbjct: 400 RLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENGGDFNVTLAVKSQTITDGLRYSLATG 459
Query: 425 NWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLHNSQWGMMCP 475
NWG Q A +RAGVSQVLN TY+ST ++ K+AKPRQLHN+ WG++CP
Sbjct: 460 NWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCP 519
Query: 476 AETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
AETPEGQACGLVKNL+LM I++G+ + PIL FL ++G E E
Sbjct: 520 AETPEGQACGLVKNLSLMTCISVGTPSEPILGFLRDYGLEVLE 562
Score = 265 (98.3 bits), Expect = 5.0e-140, Sum P(2) = 5.0e-140
Identities = 54/108 (50%), Positives = 74/108 (68%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH-------NPGQQS 74
W VI+++F+EKGLV QQLDSFDEF + ++QE+V E + + + +QH N +
Sbjct: 26 WTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSEKDHENKRYEI 85
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
F +IY+SKP TE DG T +F + ARLRNLTYS+PLYVD+T +V K
Sbjct: 86 TFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFK 133
>UNIPROTKB|Q5A8Y5 [details] [associations]
symbol:RPB140 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0042493 "response to drug"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 1126 (401.4 bits), Expect = 5.0e-140, Sum P(2) = 5.0e-140
Identities = 223/403 (55%), Positives = 295/403 (73%)
Query: 129 EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKK 188
+VPIMLRS +C L ++ EL ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK
Sbjct: 163 KVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKK 222
Query: 189 RQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIII 248
P+ ++VAE+ S E +R S++ + + R G SG+ I ATLPYI+ +IPI+I
Sbjct: 223 AAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRDEK--GVSGRTIKATLPYIKEDIPIVI 280
Query: 249 LFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVT 304
+FRALG D DILEHICYD D QM+E+L+P +EE F IQ ++ +IG+RG +G+
Sbjct: 281 VFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIR 339
Query: 305 REKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNK 364
REK I+YAK+ILQKE+LP++ + ET+KA++ G++++RLLLCAL R+ DDRDH+G K
Sbjct: 340 REKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKK 399
Query: 365 RLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATG 424
RLDLAGPLL LFR LF+KLT D+ +Y+Q+CV+NG D N+ A+K++TIT GL+YSLATG
Sbjct: 400 RLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENGGDFNVTLAVKSQTITDGLRYSLATG 459
Query: 425 NWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLHNSQWGMMCP 475
NWG Q A +RAGVSQVLN TY+ST ++ K+AKPRQLHN+ WG++CP
Sbjct: 460 NWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCP 519
Query: 476 AETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
AETPEGQACGLVKNL+LM I++G+ + PIL FL ++G E E
Sbjct: 520 AETPEGQACGLVKNLSLMTCISVGTPSEPILGFLRDYGLEVLE 562
Score = 265 (98.3 bits), Expect = 5.0e-140, Sum P(2) = 5.0e-140
Identities = 54/108 (50%), Positives = 74/108 (68%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH-------NPGQQS 74
W VI+++F+EKGLV QQLDSFDEF + ++QE+V E + + + +QH N +
Sbjct: 26 WTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSEKDHENKRYEI 85
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
F +IY+SKP TE DG T +F + ARLRNLTYS+PLYVD+T +V K
Sbjct: 86 TFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFK 133
>SGD|S000005677 [details] [associations]
symbol:RPB2 "RNA polymerase II second largest subunit B150"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IDA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005677 PANTHER:PTHR20856 GO:GO:0005739
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0006366
GO:GO:0003899 EMBL:U55020 RefSeq:NP_014796.3 GeneID:854324
KEGG:sce:YOR153W KO:K08711 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:1I3Q
PDB:1I50 PDB:1I6H PDB:1K83 PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U
PDB:1R9S PDB:1R9T PDB:1SFO PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG
PDB:1TWH PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63
PDB:2B8K PDB:2E2H PDB:2E2I PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7
PDB:2JA8 PDB:2NVQ PDB:2NVT PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z
PDB:2R92 PDB:2R93 PDB:2VUM PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG
PDB:3GTJ PDB:3GTK PDB:3GTL PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ
PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ
PDB:3I4M PDB:3I4N PDB:3K1F PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2
PDB:3PO3 PDB:3QT1 PDB:3RZD PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16
PDB:3S17 PDB:3S1M PDB:3S1N PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H
PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I
PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS
PDBsum:1I3Q PDBsum:1I50 PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK
PDBsum:1NT9 PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T
PDBsum:1SFO PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG
PDBsum:1TWH PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y
PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I
PDBsum:2E2J PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8
PDBsum:2NVQ PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ
PDBsum:2R7Z PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9
PDBsum:3CQZ PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK
PDBsum:3GTL PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ
PDBsum:3H3V PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX
PDBsum:3HOY PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F
PDBsum:3K7A PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3
PDBsum:3QT1 PDBsum:3RZD PDBsum:3RZO PDBsum:3S14 PDBsum:3S15
PDBsum:3S16 PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q
PDBsum:3S1R PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C
PDBsum:4A3D PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I
PDBsum:4A3J PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93
PDBsum:4BBR PDBsum:4BBS KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 OrthoDB:EOG45HW5D
EMBL:M15693 EMBL:Z75059 EMBL:AF527884 PIR:A25884 RefSeq:NP_014794.3
ProteinModelPortal:P08518 DIP:DIP-14N IntAct:P08518
MINT:MINT-654304 STRING:P08518 PaxDb:P08518 PeptideAtlas:P08518
PRIDE:P08518 EnsemblFungi:YOR151C GeneID:854322 KEGG:sce:YOR151C
CYGD:YOR151c EvolutionaryTrace:P08518 NextBio:976360
ArrayExpress:P08518 Genevestigator:P08518 GermOnline:YOR151C
Uniprot:P08518
Length = 1224
Score = 1115 (397.6 bits), Expect = 7.4e-137, Sum P(2) = 7.4e-137
Identities = 223/402 (55%), Positives = 292/402 (72%)
Query: 130 VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
+PIMLRS C L + ++ L +L ECP+D GGYFIINGSEKVLIAQE+ + N V VFKK
Sbjct: 170 LPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKA 229
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
P+ ++VAE+ S E +R ST+ V + R GSS + I ATLPYI+ +IPI+I+
Sbjct: 230 APSPISHVAEIRSALEKGSRFISTLQVKLYGRE----GSSARTIKATLPYIKQDIPIVII 285
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
FRALG D +ILEHICYD D QM+E+L+P +E+ F IQ+++ +IG+RG +G+ +
Sbjct: 286 FRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKK 345
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
EK I+YAK+ILQKE LPH+ + E++KA++ G++I+RLLLCAL R+ +DDRDH+G KR
Sbjct: 346 EKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKR 405
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGN 425
LDLAGPLL LF+TLF+KLT D+ Y+Q+ V+ D N++ AI AKTIT GLKY+LATGN
Sbjct: 406 LDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGN 465
Query: 426 WG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLHNSQWGMMCPA 476
WG Q A +RAGVSQVLN TY+ST ++ KLAKPRQLHN+ WG++CPA
Sbjct: 466 WGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPA 525
Query: 477 ETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
ETPEGQACGLVKNL+LM I++G+ PI+ FL EWG E E
Sbjct: 526 ETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLE 567
Score = 246 (91.7 bits), Expect = 7.4e-137, Sum P(2) = 7.4e-137
Identities = 52/106 (49%), Positives = 72/106 (67%)
Query: 21 AWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS------ 74
+WAVISA+F EKGLV QQLDSF++F T+Q+I+ E + + + +QH +
Sbjct: 30 SWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYE 89
Query: 75 -DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR 119
F +IY++KPM+ ESDG T L+ + ARLRNLTYS+ L+VDV KR
Sbjct: 90 ISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKR 135
>WB|WBGene00016140 [details] [associations]
symbol:rpb-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0016477 "cell
migration" evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:FO080680 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA EMBL:U10333 PIR:E88445
PIR:T43701 RefSeq:NP_498047.1 ProteinModelPortal:Q10578 SMR:Q10578
STRING:Q10578 PaxDb:Q10578 EnsemblMetazoa:C26E6.4.1
EnsemblMetazoa:C26E6.4.2 GeneID:175668 KEGG:cel:CELE_C26E6.4
CTD:175668 WormBase:C26E6.4 GeneTree:ENSGT00690000102234
HOGENOM:HOG000222962 InParanoid:Q10578 NextBio:889138
Uniprot:Q10578
Length = 1193
Score = 1320 (469.7 bits), Expect = 9.8e-135, P = 9.8e-135
Identities = 278/475 (58%), Positives = 333/475 (70%)
Query: 69 NPGQQS-DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK----- 122
NP + S F +IYLSKP E DG + ARLRNLTY++PLYVD+TK V +
Sbjct: 87 NPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRDDSAT 146
Query: 123 -KGHDGE---EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKM 178
K +D +VP+MLRSSYC L + + LTEL ECP D GGYF+INGSEKVLIAQEKM
Sbjct: 147 EKVYDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKM 206
Query: 179 STNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS--GQYIHAT 236
+TN VYVF + KYA+ E S E+ +RP ST++V ML+R G + GQ I
Sbjct: 207 ATNTVYVFSMKD-GKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGI 265
Query: 237 LPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ---- 292
LPYI+ EIPI+I+FRALGF +D DIL HI YDF D +MME+++PSL+EAF IQ Q
Sbjct: 266 LPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSLDEAFVIQEQNVALN 325
Query: 293 YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGR 352
+IG RGA GVTRE+ IKYA+EILQKE+LPHVG + CETKKA++ G+++HRLLL ALGR
Sbjct: 326 FIGARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGR 385
Query: 353 RAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKT 412
R DDRDH GNKRLDLAGPLL LFR+LFR L ++R QK ++ D L +K T
Sbjct: 386 RELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKNDDFALDVCVKTST 445
Query: 413 ITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKPR 463
IT GL YSLATGNWG Q A +RAGVSQVLN LTY +T ++ KLAKPR
Sbjct: 446 ITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPR 505
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
QLHN+QWGM+CPAETPEGQA GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 506 QLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLE 560
Score = 538 (194.4 bits), Expect = 1.0e-50, P = 1.0e-50
Identities = 121/226 (53%), Positives = 151/226 (66%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH------NPGQQS- 74
W VISAYF+EKGLVRQQLDSFDEF Q +Q IV++S +E++ E+QH NP + S
Sbjct: 34 WVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGTDMENPAKFSL 93
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK------KGHDGE 128
F +IYLSKP E DG + ARLRNLTY++PLYVD+TK V + K +D
Sbjct: 94 KFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRDDSATEKVYDKV 153
Query: 129 ---EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYV 185
+VP+MLRSSYC L + + LTEL ECP D GGYF+INGSEKVLIAQEKM+TN VYV
Sbjct: 154 FVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYV 213
Query: 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ 231
F + KYA+ E S E+ +RP ST++V ML+R GG G+
Sbjct: 214 FSMKD-GKYAFKTECRSCLENSSRPTSTMWVNMLAR----GGGGGK 254
>ASPGD|ASPL0000039770 [details] [associations]
symbol:AN9120 species:162425 "Emericella nidulans"
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA HOGENOM:HOG000222962 EnsemblFungi:CADANIAT00009490
Uniprot:C8VK81
Length = 1252
Score = 1116 (397.9 bits), Expect = 5.2e-134, Sum P(2) = 5.2e-134
Identities = 219/409 (53%), Positives = 295/409 (72%)
Query: 125 HDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVY 184
H G+ +PIML+S YC L ++AL + ECPYD GGYFIINGSEKVLIAQE+ + N V
Sbjct: 179 HIGK-MPIMLKSKYCLLRDLGEQALYDWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQ 237
Query: 185 VFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-TSAKGGSSGQYIHATLPYIRTE 243
VFKK P+ YVAE+ S E +R S + + + + SAKGG G I +TLPYI+ +
Sbjct: 238 VFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFGKGDSAKGGF-GPTIRSTLPYIKAD 296
Query: 244 IPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGA 299
IPI+I+FRALG +DEDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG+
Sbjct: 297 IPIVIVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGS 356
Query: 300 TVG-VTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDR 358
+ + E+ ++YA+EI+QKE+LPH+ + ET+KA++ G+++HRLL CALGRR DDR
Sbjct: 357 SQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDR 416
Query: 359 DHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLK 418
DH+G KRLDLAGPLL LFR LF ++T D++ YVQ+CV++ +++ L +KA T+T GL+
Sbjct: 417 DHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVESDREIYLNVGLKASTVTQGLR 476
Query: 419 YSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLHNSQ 469
Y+LATGNWG Q AA +AGVSQVL+ TYAST ++ K+AKPRQLHN+
Sbjct: 477 YALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 536
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
WG++CPAETPEGQACGLVKNLALM YIT+G+ + PI++F+ + E E
Sbjct: 537 WGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 585
Score = 218 (81.8 bits), Expect = 5.2e-134, Sum P(2) = 5.2e-134
Identities = 46/110 (41%), Positives = 69/110 (62%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIE----IRP-ESQHNP----GQ 72
W VIS++F+ KGLV QQLDSFDEF +T+QE+V+E + I P E + +P
Sbjct: 26 WTVISSFFDTKGLVSQQLDSFDEFISSTLQELVEEQGQVTLDQTIPPSEDEVDPVVVRRY 85
Query: 73 QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
+ F + LS+PM E DG + ARLRN+TY++PLY+ + K++++
Sbjct: 86 ELKFGTVMLSRPMAMEGDGAATIMLPHEARLRNMTYASPLYLGIKKKIME 135
>GENEDB_PFALCIPARUM|PFB0715w [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase II
second largest subunit, putative" species:5833 "Plasmodium
falciparum" [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006366 EMBL:AE001362 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 HOGENOM:HOG000222962 RefSeq:XP_001349662.2
ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 1018 (363.4 bits), Expect = 3.2e-121, Sum P(2) = 3.2e-121
Identities = 219/466 (46%), Positives = 303/466 (65%)
Query: 76 FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR-VIKKGHDGEEV---- 130
+ E LS + + L +A ++ S + +VTK+ V+K+ E +
Sbjct: 109 YDEKNLSNKNLWPQEARLRNLTYSSAIYIDIEQSTYIIDEVTKKPVLKEKFIYERINLGR 168
Query: 131 -PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
P+ML+S +C + + ++GEC YD+GGYFI+NG EKVL+AQE+M+ N +YVFKK+
Sbjct: 169 IPLMLKSMFCWTKGLPENEIADMGECSYDQGGYFIVNGGEKVLVAQERMANNFIYVFKKK 228
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS-AKGGS--SGQYIHATLPYIRTEIPI 246
QP+K+ +VAE+ S E +++ S V M +R+ ++ GS SG + ATLPYIRTEI +
Sbjct: 229 QPSKFGWVAEIRSQME-RSQATSGFSVKMKTRSGGSQYGSNKSGGQLVATLPYIRTEISV 287
Query: 247 IILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVG 302
ILFRALG T+D DIL+ I YDF D M+ LR +LEE Q +IGKRG TVG
Sbjct: 288 GILFRALGCTSDRDILQRIVYDFNDKLMINALRETLEECIEYPTQDVCLDFIGKRGPTVG 347
Query: 303 VTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYG 362
+REK I YAKE+L+KE+LPH+GT E+KK+Y+ G++I+RLLL LGR EDDRDH+G
Sbjct: 348 ASREKRILYAKELLRKEVLPHMGTHPGVESKKSYFIGYMINRLLLAELGRIKEDDRDHFG 407
Query: 363 NKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKA-KTITGGLKYSL 421
KRLD+AGPL+ F T FRK+ DVR +Q+ +DN K ++ AI++ IT G++Y L
Sbjct: 408 KKRLDIAGPLMASSFSTYFRKMAKDVRRVLQRQIDNNKPFDVAGAIRSCSQITQGMQYQL 467
Query: 422 ATGNWGQGNAAGT-RAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLHNSQWGM 472
ATGNWG+ R GV+QVLN LTY+S ++ K+AKPRQLHN+ WGM
Sbjct: 468 ATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRLNTPLGREGKMAKPRQLHNTHWGM 527
Query: 473 MCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
+CP ETPEGQ+ GLVKNL+LM I++G++ I EFL EWG E+ +
Sbjct: 528 ICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIYEFLTEWGLESLD 573
Score = 195 (73.7 bits), Expect = 3.2e-121, Sum P(2) = 3.2e-121
Identities = 40/104 (38%), Positives = 65/104 (62%)
Query: 21 AWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ-QSD---- 75
+W VI ++F GLV QQ++S+++F + MQEI+DE IEIRP+ Q+ + ++D
Sbjct: 36 SWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKIEIRPQPQYRTDRDENDNIIY 95
Query: 76 ---FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV 116
F ++ L +P E + L+ + ARLRNLTYS+ +Y+D+
Sbjct: 96 SLKFGQLSLDRPFYDEKNLSNKNLWPQEARLRNLTYSSAIYIDI 139
>UNIPROTKB|O96236 [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006366 EMBL:AE001362
GO:GO:0003899 GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_001349662.2 ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 1018 (363.4 bits), Expect = 3.2e-121, Sum P(2) = 3.2e-121
Identities = 219/466 (46%), Positives = 303/466 (65%)
Query: 76 FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR-VIKKGHDGEEV---- 130
+ E LS + + L +A ++ S + +VTK+ V+K+ E +
Sbjct: 109 YDEKNLSNKNLWPQEARLRNLTYSSAIYIDIEQSTYIIDEVTKKPVLKEKFIYERINLGR 168
Query: 131 -PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
P+ML+S +C + + ++GEC YD+GGYFI+NG EKVL+AQE+M+ N +YVFKK+
Sbjct: 169 IPLMLKSMFCWTKGLPENEIADMGECSYDQGGYFIVNGGEKVLVAQERMANNFIYVFKKK 228
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS-AKGGS--SGQYIHATLPYIRTEIPI 246
QP+K+ +VAE+ S E +++ S V M +R+ ++ GS SG + ATLPYIRTEI +
Sbjct: 229 QPSKFGWVAEIRSQME-RSQATSGFSVKMKTRSGGSQYGSNKSGGQLVATLPYIRTEISV 287
Query: 247 IILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVG 302
ILFRALG T+D DIL+ I YDF D M+ LR +LEE Q +IGKRG TVG
Sbjct: 288 GILFRALGCTSDRDILQRIVYDFNDKLMINALRETLEECIEYPTQDVCLDFIGKRGPTVG 347
Query: 303 VTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYG 362
+REK I YAKE+L+KE+LPH+GT E+KK+Y+ G++I+RLLL LGR EDDRDH+G
Sbjct: 348 ASREKRILYAKELLRKEVLPHMGTHPGVESKKSYFIGYMINRLLLAELGRIKEDDRDHFG 407
Query: 363 NKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKA-KTITGGLKYSL 421
KRLD+AGPL+ F T FRK+ DVR +Q+ +DN K ++ AI++ IT G++Y L
Sbjct: 408 KKRLDIAGPLMASSFSTYFRKMAKDVRRVLQRQIDNNKPFDVAGAIRSCSQITQGMQYQL 467
Query: 422 ATGNWGQGNAAGT-RAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLHNSQWGM 472
ATGNWG+ R GV+QVLN LTY+S ++ K+AKPRQLHN+ WGM
Sbjct: 468 ATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRLNTPLGREGKMAKPRQLHNTHWGM 527
Query: 473 MCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
+CP ETPEGQ+ GLVKNL+LM I++G++ I EFL EWG E+ +
Sbjct: 528 ICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIYEFLTEWGLESLD 573
Score = 195 (73.7 bits), Expect = 3.2e-121, Sum P(2) = 3.2e-121
Identities = 40/104 (38%), Positives = 65/104 (62%)
Query: 21 AWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ-QSD---- 75
+W VI ++F GLV QQ++S+++F + MQEI+DE IEIRP+ Q+ + ++D
Sbjct: 36 SWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKIEIRPQPQYRTDRDENDNIIY 95
Query: 76 ---FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV 116
F ++ L +P E + L+ + ARLRNLTYS+ +Y+D+
Sbjct: 96 SLKFGQLSLDRPFYDEKNLSNKNLWPQEARLRNLTYSSAIYIDI 139
>ZFIN|ZDB-GENE-030131-2887 [details] [associations]
symbol:polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0031017 "exocrine pancreas development" evidence=IMP]
[GO:0048565 "digestive tract development" evidence=IMP] [GO:0009304
"tRNA transcription" evidence=IMP] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-030131-2887
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:BX465207 IPI:IPI00505191
Ensembl:ENSDART00000091466 ArrayExpress:F1QQA2 Bgee:F1QQA2
Uniprot:F1QQA2
Length = 1129
Score = 662 (238.1 bits), Expect = 3.6e-64, P = 3.6e-64
Identities = 177/520 (34%), Positives = 273/520 (52%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 81
W ++ A+ + KGLV+Q +DSF+ F +++I+ + I S +P + IY+
Sbjct: 27 WKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKIT----SDADPMWYLKYLNIYV 82
Query: 82 SKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVPIMLRS 136
P + ES T + RLR++TYSAP+ VD+ ++R+I+ +PIMLRS
Sbjct: 83 GMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRS 142
Query: 137 SYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAY 196
S C L + ++L ECP D GGYFI+ G EKV++ QE++S N + V + R+ A
Sbjct: 143 SNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVDQDRKGTVGAS 202
Query: 197 VAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFT 256
V S E ++R T + R K H TL + PI I+F+A+G
Sbjct: 203 VTS--STHEKKSR---TNMIVKQGRFYLK--------HNTLS---EDAPIAIIFKAMGVE 246
Query: 257 ADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVTREKM-- 308
+D++I++ I + +M PSLEE F Q Q +YIG + V R++M
Sbjct: 247 SDQEIVQMIG---TEEHVMAAFAPSLEECQKAQIFTQTQALRYIGNK-----VRRQRMWG 298
Query: 309 --IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRL 366
++ A+E+L +L HV +F K Y ++ R++L A G DDRD+YGNKRL
Sbjct: 299 GQMEEARELLASTILTHVPVKEFNFRAKCIYLAVMVRRVIL-AQGDNKVDDRDYYGNKRL 357
Query: 367 DLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGLKYSLATG 424
+LAG LL LF LF+K +++ + + + ++ IT G+ +++TG
Sbjct: 358 ELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQFDVVKHMRQDQITNGMVNAISTG 417
Query: 425 NWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQWGMMCPA 476
NW R GV+QVL+ L++ S + + K++ PR L SQWGM+CP+
Sbjct: 418 NWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPS 477
Query: 477 ETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
+TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 478 DTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVED 517
>UNIPROTKB|F8VRE2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR015712
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC009721 GO:GO:0032549 EMBL:AC078992 EMBL:AC080012
HGNC:HGNC:30348 IPI:IPI01022248 ProteinModelPortal:F8VRE2
SMR:F8VRE2 Ensembl:ENST00000551370 ArrayExpress:F8VRE2 Bgee:F8VRE2
Uniprot:F8VRE2
Length = 676
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 173/518 (33%), Positives = 266/518 (51%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 81
W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P + IY+
Sbjct: 27 WRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKYLNIYV 82
Query: 82 SKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVPIMLRS 136
P + ES T + RLR++TYSAP+ VD+ ++R+I+ +PIMLRS
Sbjct: 83 GLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRS 142
Query: 137 SYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAY 196
S C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R K A
Sbjct: 143 SNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR---KGAV 199
Query: 197 VAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILFRALGF 255
A V S + SRT+ Y+ H TL +IPI+I+F+A+G
Sbjct: 200 GASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTLS---EDIPIVIIFKAMGV 245
Query: 256 TADEDILEHI-CYDFQDTQMMELLRPSLEEAFFIQNQ--QYIGKRGATV----GVTREKM 308
+D++I++ I + L + F Q Q +YIG + G ++
Sbjct: 246 ESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTK 305
Query: 309 IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDL 368
I+ A+E+L +L HV +F K Y ++ R++L A G DDRD+YGNKRL+L
Sbjct: 306 IEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLEL 364
Query: 369 AGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGLKYSLATGNW 426
AG LL LF LF+K +++ + + + ++ IT G+ +++TGNW
Sbjct: 365 AGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNW 424
Query: 427 GQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQWGMMCPAET 478
R GV+QVL+ L+Y S + + K++ PR L SQWGM+CP++T
Sbjct: 425 SLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDT 484
Query: 479 PEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
PEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 485 PEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>UNIPROTKB|F1SPQ0 [details] [associations]
symbol:LOC100737037 "DNA-directed RNA polymerase"
species:9823 "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 OMA:DMIMNPH EMBL:FP565199
Ensembl:ENSSSCT00000000178 Uniprot:F1SPQ0
Length = 902
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 172/518 (33%), Positives = 268/518 (51%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 81
W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P + IY+
Sbjct: 24 WRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKYLNIYV 79
Query: 82 SKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVPIMLRS 136
P + ES T + RLR++TYSAP+ VD+ ++R+I+ +PIMLRS
Sbjct: 80 GLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRS 139
Query: 137 SYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAY 196
S C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R+ A
Sbjct: 140 SNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGTVGAS 199
Query: 197 VAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILFRALGF 255
V S E ++R + + K G Y+ H TL +IPI+I+F+A+G
Sbjct: 200 VTS--STHEKKSR----------TNMAVKQGRF--YLRHNTLS---EDIPIVIIFKAMGV 242
Query: 256 TADEDILEHI-CYDFQDTQMMELLRPSLEEAFFIQNQ--QYIGKRGATV----GVTREKM 308
+D++I++ I + L + F Q Q +YIG + G ++
Sbjct: 243 ESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTK 302
Query: 309 IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDL 368
I+ A+E+L +L HV +F K Y ++ R++L A G DDRD+YGNKRL+L
Sbjct: 303 IEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLEL 361
Query: 369 AGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGLKYSLATGNW 426
AG LL LF LF+K +++ + + + ++ IT G+ +++TGNW
Sbjct: 362 AGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNW 421
Query: 427 GQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQWGMMCPAET 478
R GV+QVL+ L+Y S + + K++ PR L SQWGM+CP++T
Sbjct: 422 SLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDT 481
Query: 479 PEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
PEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 482 PEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 519
>UNIPROTKB|Q9NW08 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0045089 "positive regulation of innate
immune response" evidence=IMP] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0006385 "transcription elongation from
RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination
of RNA polymerase III transcription" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
GO:GO:0045087 EMBL:CH471054 GO:GO:0006351 GO:GO:0051607
GO:GO:0045089 Reactome:REACT_1788 GO:GO:0003899 GO:GO:0032728
GO:GO:0006386 GO:GO:0006385 EMBL:AC009721 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 Orphanet:88637 KO:K03021
OMA:DMIMNPH EMBL:AY092084 EMBL:AK001161 EMBL:AK001250 EMBL:AK122713
EMBL:AK291635 EMBL:AC078992 EMBL:AC080012 EMBL:BC046238
IPI:IPI00301346 IPI:IPI00930490 RefSeq:NP_001154180.1
RefSeq:NP_060552.4 UniGene:Hs.610795 UniGene:Hs.62696
ProteinModelPortal:Q9NW08 IntAct:Q9NW08 STRING:Q9NW08
PhosphoSite:Q9NW08 DMDM:29428029 PaxDb:Q9NW08 PRIDE:Q9NW08
Ensembl:ENST00000228347 Ensembl:ENST00000539066 GeneID:55703
KEGG:hsa:55703 UCSC:uc001tlp.3 CTD:55703 GeneCards:GC12P106751
H-InvDB:HIX0037055 HGNC:HGNC:30348 HPA:HPA036466 MIM:614366
MIM:614381 neXtProt:NX_Q9NW08 PharmGKB:PA134867680
InParanoid:Q9NW08 OrthoDB:EOG49ZXND PhylomeDB:Q9NW08
GenomeRNAi:55703 NextBio:60549 ArrayExpress:Q9NW08 Bgee:Q9NW08
CleanEx:HS_POLR3B Genevestigator:Q9NW08 GermOnline:ENSG00000013503
Uniprot:Q9NW08
Length = 1133
Score = 647 (232.8 bits), Expect = 1.5e-62, P = 1.5e-62
Identities = 173/518 (33%), Positives = 266/518 (51%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 81
W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P + IY+
Sbjct: 27 WRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKYLNIYV 82
Query: 82 SKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVPIMLRS 136
P + ES T + RLR++TYSAP+ VD+ ++R+I+ +PIMLRS
Sbjct: 83 GLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRS 142
Query: 137 SYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAY 196
S C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R K A
Sbjct: 143 SNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR---KGAV 199
Query: 197 VAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILFRALGF 255
A V S + SRT+ Y+ H TL +IPI+I+F+A+G
Sbjct: 200 GASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTLS---EDIPIVIIFKAMGV 245
Query: 256 TADEDILEHI-CYDFQDTQMMELLRPSLEEAFFIQNQ--QYIGKRGATV----GVTREKM 308
+D++I++ I + L + F Q Q +YIG + G ++
Sbjct: 246 ESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTK 305
Query: 309 IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDL 368
I+ A+E+L +L HV +F K Y ++ R++L A G DDRD+YGNKRL+L
Sbjct: 306 IEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLEL 364
Query: 369 AGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGLKYSLATGNW 426
AG LL LF LF+K +++ + + + ++ IT G+ +++TGNW
Sbjct: 365 AGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNW 424
Query: 427 GQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQWGMMCPAET 478
R GV+QVL+ L+Y S + + K++ PR L SQWGM+CP++T
Sbjct: 425 SLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDT 484
Query: 479 PEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
PEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 485 PEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>UNIPROTKB|E1BRJ4 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045089
"positive regulation of innate immune response" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AADN02006293 EMBL:AADN02006294
EMBL:AADN02006295 IPI:IPI00580707 RefSeq:XP_416307.3
UniGene:Gga.54760 Ensembl:ENSGALT00000020649 GeneID:418071
KEGG:gga:418071 Uniprot:E1BRJ4
Length = 1132
Score = 646 (232.5 bits), Expect = 2.0e-62, P = 2.0e-62
Identities = 172/517 (33%), Positives = 267/517 (51%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 81
W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P + IY+
Sbjct: 27 WRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKYLNIYV 82
Query: 82 SKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVPIMLRS 136
P + ES T + RLR++TYSAP+ VD+ ++R+I+ +PIMLRS
Sbjct: 83 GTPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRS 142
Query: 137 SYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAY 196
S C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R+ A
Sbjct: 143 SNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGTVGAS 202
Query: 197 VAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILFRALGF 255
V S E ++R + K G Y+ H TL +IPI I+F+A+G
Sbjct: 203 VTS--STHEKKSRTNMVV----------KQGRF--YLRHNTLS---EDIPIAIIFKAMGV 245
Query: 256 TADEDILEHI-CYDFQDTQMMELLRPSLEEAFFIQNQ--QYIG---KRGATVGVTREKMI 309
+D++I++ I + L + F Q Q +YIG +R G ++ +
Sbjct: 246 ESDQEIVQMIGTEEHVMAAFAPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGPKKTKM 305
Query: 310 KYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLA 369
+ A+E+L +L HV +F K Y ++ R++L A G DDRD+YGNKRL+LA
Sbjct: 306 EEARELLASTILTHVLVKEFNFRAKCIYTAVMVRRVIL-AQGENKVDDRDYYGNKRLELA 364
Query: 370 GPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGLKYSLATGNWG 427
G LL LF LF+K +++ + + + ++ IT G+ +++TGNW
Sbjct: 365 GQLLSLLFEDLFKKFNSELKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWS 424
Query: 428 QGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQWGMMCPAETP 479
R GV+QVL+ L+Y S + + K++ PR L SQWGM+CP++TP
Sbjct: 425 LKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTP 484
Query: 480 EGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
EG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 485 EGEACGLVKNLALMTHITTDMEDGPIIKLASNLGVED 521
>MGI|MGI:1917678 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=ISO] [GO:0045087
"innate immune response" evidence=IEA] [GO:0045089 "positive
regulation of innate immune response" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:1917678 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND EMBL:BC044796 EMBL:BC068143 EMBL:AK039366
IPI:IPI00410871 RefSeq:NP_081699.1 UniGene:Mm.335007
ProteinModelPortal:P59470 STRING:P59470 PhosphoSite:P59470
PaxDb:P59470 PRIDE:P59470 Ensembl:ENSMUST00000077175 GeneID:70428
KEGG:mmu:70428 UCSC:uc007gku.1 InParanoid:P59470 NextBio:331603
Bgee:P59470 CleanEx:MM_POLR3B Genevestigator:P59470
GermOnline:ENSMUSG00000034453 Uniprot:P59470
Length = 1133
Score = 646 (232.5 bits), Expect = 2.0e-62, P = 2.0e-62
Identities = 173/518 (33%), Positives = 266/518 (51%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 81
W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P + IY+
Sbjct: 27 WRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKYLNIYV 82
Query: 82 SKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVPIMLRS 136
P + ES T + RLR++TYSAP+ VD+ ++R+I+ +PIMLRS
Sbjct: 83 GLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRS 142
Query: 137 SYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAY 196
S C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R K A
Sbjct: 143 SNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR---KGAV 199
Query: 197 VAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILFRALGF 255
A V S + SRT+ Y+ H TL +IPI+I+F+A+G
Sbjct: 200 GASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTLS---EDIPIVIIFKAMGV 245
Query: 256 TADEDILEHI-CYDFQDTQMMELLRPSLEEAFFIQNQ--QYIGKRGATV----GVTREKM 308
+D++I++ I + L + F Q Q +YIG + G ++
Sbjct: 246 ESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTK 305
Query: 309 IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDL 368
I+ A+E+L +L HV +F K Y ++ R++L A G DDRD+YGNKRL+L
Sbjct: 306 IEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLEL 364
Query: 369 AGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGLKYSLATGNW 426
AG LL LF LF+K +++ + + + ++ IT G+ +++TGNW
Sbjct: 365 AGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNW 424
Query: 427 GQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQWGMMCPAET 478
R GV+QVL+ L+Y S + + K++ PR L SQWGM+CP++T
Sbjct: 425 SLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDT 484
Query: 479 PEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
PEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 485 PEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVED 522
>RGD|1565311 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed) polypeptide
B" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA;ISO]
[GO:0045089 "positive regulation of innate immune response"
evidence=IEA;ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1565311 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND IPI:IPI00365981 RefSeq:NP_001178807.1
UniGene:Rn.37546 Ensembl:ENSRNOT00000009746 GeneID:362858
KEGG:rno:362858 UCSC:RGD:1565311 NextBio:681550 Uniprot:D3ZV30
Length = 1133
Score = 646 (232.5 bits), Expect = 2.0e-62, P = 2.0e-62
Identities = 173/518 (33%), Positives = 266/518 (51%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 81
W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P + IY+
Sbjct: 27 WRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKYLNIYV 82
Query: 82 SKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVPIMLRS 136
P + ES T + RLR++TYSAP+ VD+ ++R+I+ +PIMLRS
Sbjct: 83 GLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRS 142
Query: 137 SYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAY 196
S C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R K A
Sbjct: 143 SNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR---KGAV 199
Query: 197 VAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILFRALGF 255
A V S + SRT+ Y+ H TL +IPI+I+F+A+G
Sbjct: 200 GASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTLS---EDIPIVIIFKAMGV 245
Query: 256 TADEDILEHI-CYDFQDTQMMELLRPSLEEAFFIQNQ--QYIGKRGATV----GVTREKM 308
+D++I++ I + L + F Q Q +YIG + G ++
Sbjct: 246 ESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTK 305
Query: 309 IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDL 368
I+ A+E+L +L HV +F K Y ++ R++L A G DDRD+YGNKRL+L
Sbjct: 306 IEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLEL 364
Query: 369 AGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGLKYSLATGNW 426
AG LL LF LF+K +++ + + + ++ IT G+ +++TGNW
Sbjct: 365 AGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNW 424
Query: 427 GQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQWGMMCPAET 478
R GV+QVL+ L+Y S + + K++ PR L SQWGM+CP++T
Sbjct: 425 SLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDT 484
Query: 479 PEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
PEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 485 PEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVED 522
>UNIPROTKB|E1BPX6 [details] [associations]
symbol:POLR3B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045089 "positive regulation of innate immune response"
evidence=IEA] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:DAAA02013740 EMBL:DAAA02013741
EMBL:DAAA02013742 IPI:IPI00924128 RefSeq:NP_001179718.1
UniGene:Bt.42818 Ensembl:ENSBTAT00000038043 GeneID:540839
KEGG:bta:540839 NextBio:20878865 ArrayExpress:E1BPX6 Uniprot:E1BPX6
Length = 1133
Score = 644 (231.8 bits), Expect = 3.3e-62, P = 3.3e-62
Identities = 172/518 (33%), Positives = 268/518 (51%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 81
W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P + IY+
Sbjct: 27 WRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKYLNIYV 82
Query: 82 SKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVPIMLRS 136
P + ES T + RLR++TYSAP+ VD+ ++R+I+ +PIMLRS
Sbjct: 83 GLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRS 142
Query: 137 SYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAY 196
S C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R+ A
Sbjct: 143 SNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGTVGAS 202
Query: 197 VAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILFRALGF 255
V S E ++R + + K G Y+ H TL +IPI+I+F+A+G
Sbjct: 203 VTS--STHEKKSR----------TNMAVKQGRF--YLRHNTLS---EDIPIVIIFKAMGV 245
Query: 256 TADEDILEHI-CYDFQDTQMMELLRPSLEEAFFIQNQ--QYIGKRGATV----GVTREKM 308
+D++I++ I + L + F Q Q +YIG + G ++
Sbjct: 246 ESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTK 305
Query: 309 IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDL 368
I+ A+E+L +L HV +F K Y ++ R++L A G DDRD+YGNKRL+L
Sbjct: 306 IEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLEL 364
Query: 369 AGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGLKYSLATGNW 426
AG LL LF LF+K +++ + + + ++ IT G+ +++TGNW
Sbjct: 365 AGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNW 424
Query: 427 GQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQWGMMCPAET 478
R GV+QVL+ L+Y S + + K++ PR L SQWGM+CP++T
Sbjct: 425 SLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDT 484
Query: 479 PEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
PEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 485 PEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>UNIPROTKB|E2RHZ2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0045089 "positive regulation of innate
immune response" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AAEX03007377 RefSeq:XP_531760.2
Ensembl:ENSCAFT00000002941 GeneID:474531 KEGG:cfa:474531
NextBio:20850526 Uniprot:E2RHZ2
Length = 1133
Score = 644 (231.8 bits), Expect = 3.3e-62, P = 3.3e-62
Identities = 172/518 (33%), Positives = 268/518 (51%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 81
W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P + IY+
Sbjct: 27 WRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKYLNIYV 82
Query: 82 SKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVPIMLRS 136
P + ES T + RLR++TYSAP+ VD+ ++R+I+ +PIMLRS
Sbjct: 83 GLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRS 142
Query: 137 SYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAY 196
S C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R+ A
Sbjct: 143 SNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGTVGAS 202
Query: 197 VAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILFRALGF 255
V S E ++R + + K G Y+ H TL +IPI+I+F+A+G
Sbjct: 203 VTS--STHEKKSR----------TNMAVKQGRF--YLRHNTLS---EDIPIVIIFKAMGV 245
Query: 256 TADEDILEHI-CYDFQDTQMMELLRPSLEEAFFIQNQ--QYIGKRGATV----GVTREKM 308
+D++I++ I + L + F Q Q +YIG + G ++
Sbjct: 246 ESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTK 305
Query: 309 IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDL 368
I+ A+E+L +L HV +F K Y ++ R++L A G DDRD+YGNKRL+L
Sbjct: 306 IEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLEL 364
Query: 369 AGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGLKYSLATGNW 426
AG LL LF LF+K +++ + + + ++ IT G+ +++TGNW
Sbjct: 365 AGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNW 424
Query: 427 GQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQWGMMCPAET 478
R GV+QVL+ L+Y S + + K++ PR L SQWGM+CP++T
Sbjct: 425 SLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDT 484
Query: 479 PEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
PEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 485 PEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>WB|WBGene00017300 [details] [associations]
symbol:rpc-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0003677 GO:GO:0000003 GO:GO:0006351
GO:GO:0003899 EMBL:FO081001 HSSP:P08518 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH PIR:T16011 RefSeq:NP_498192.2 ProteinModelPortal:Q27492
STRING:Q27492 PaxDb:Q27492 EnsemblMetazoa:F09F7.3.1
EnsemblMetazoa:F09F7.3.2 GeneID:175767 KEGG:cel:CELE_F09F7.3
UCSC:F09F7.3.1 CTD:175767 WormBase:F09F7.3 InParanoid:Q27492
NextBio:889574 Uniprot:Q27492
Length = 1154
Score = 635 (228.6 bits), Expect = 3.3e-61, P = 3.3e-61
Identities = 174/527 (33%), Positives = 262/527 (49%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 81
W ++ A+ + +GLV+Q L SFD F Q ++ I+ + I S NP + +I +
Sbjct: 29 WLLVPAFLKVRGLVKQHLVSFDHFVQEEIRSIMLSNQKIT----SDANPNFYLKYLDIRI 84
Query: 82 SKPMMTESDGETATLFL-KAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVPIMLR 135
KP E T + RLR++TYSAP+ VD+ +RV KK +PIMLR
Sbjct: 85 GKPSSEEGLNMTHDKITPQECRLRDMTYSAPISVDIEYTRGNQRVFKKDLIIGRMPIMLR 144
Query: 136 SSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA 195
SS C L +++ L + ECPYD GGYF++ GSEKV++ QE++S N + V R +K
Sbjct: 145 SSKCILRDLAEEELARVQECPYDPGGYFVVKGSEKVILIQEQLSKNRIMV--GRNSSKEL 202
Query: 196 YVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGF 255
C + S + S +V M KG S ++ T ++P+ I+F+A+G
Sbjct: 203 Q----CEVLSSTSERKSKTYVTM-----KKGKYSVRHNQLT-----DDVPVSIIFKAMGV 248
Query: 256 TADEDILEHICYDFQDTQMM-ELLRPSLEEAFFIQNQQ--YIGKR-------------GA 299
+D DI+ I ++ + + L S+ + Q Q Y+ + G
Sbjct: 249 ESDFDIVSTIGHEEKYVSAFAQTLEESINAGVYTQQQALAYVTSKVKARKFTPFGSLPGT 308
Query: 300 TVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRD 359
+V V A + L M+ H+ D KA Y G + RL+ LG DDRD
Sbjct: 309 SVSVLTPPKEHEAVDFLSNSMITHIACPDGNFKMKAIYLGLMTRRLIQTELGENGLDDRD 368
Query: 360 HYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGL 417
YGNKRL+LAG LL LF +F++ +++ + L ++ IT +
Sbjct: 369 FYGNKRLELAGSLLSLLFEDVFKRFNSELKRIADNALMKTMAAPLDIVKHMRQDMITNTI 428
Query: 418 KYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQ 469
+++TGNW R GV+QVL+ L+Y S T+ + K++ PR L SQ
Sbjct: 429 VNAMSTGNWIIKRFRMERLGVTQVLSRLSYISALGMMTRINSTFEKTRKVSGPRSLQPSQ 488
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
WGM+CP++TPEG+ACGLVKNLAL+ +IT S P+L L G E+
Sbjct: 489 WGMLCPSDTPEGEACGLVKNLALISHITTDSDEKPVLRLLLNSGVED 535
>POMBASE|SPAC4G9.08c [details] [associations]
symbol:rpc2 "DNA-directed RNA polymerase III complex
subunit Rpc2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PomBase:SPAC4G9.08c PANTHER:PTHR20856 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222962
KO:K03021 OMA:DMIMNPH EMBL:DQ156226 PIR:T38867 RefSeq:NP_593690.1
ProteinModelPortal:Q10233 DIP:DIP-29536N STRING:Q10233
EnsemblFungi:SPAC4G9.08c.1 GeneID:2543393 KEGG:spo:SPAC4G9.08c
OrthoDB:EOG4K6KC8 NextBio:20804408 Uniprot:Q10233
Length = 1165
Score = 635 (228.6 bits), Expect = 3.5e-61, P = 3.5e-61
Identities = 166/520 (31%), Positives = 267/520 (51%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 81
W ++ A+ + KGLV+Q LDS++ F +++IV + + S P + +I +
Sbjct: 51 WQLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIVQANEKVT----SDVEPWFYLKYLDIRV 106
Query: 82 SKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT----KRVIKKGHDG-EEVPIMLRS 136
P+ T++D A++ RLR+LTY A +YVD+ K+V+++ + +P+MLRS
Sbjct: 107 GAPVRTDADAIQASISPHECRLRDLTYGANIYVDIEYTRGKQVVRRRNVPIGRMPVMLRS 166
Query: 137 SYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAY 196
+ C L ++ + L ECP D GGYFI+ G+EKV++ QE++S N + V + +P K +
Sbjct: 167 NKCVLSGKNEMEMAALNECPLDPGGYFIVKGTEKVILVQEQLSKNRIIV--EAEPKKGLW 224
Query: 197 VAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFT 256
A V S + R T + + K S + +IPI+++ +A+G
Sbjct: 225 QASVTS--STHERKSKTYVITKNGKLYLKHNS-----------VADDIPIVVVLKAMGLQ 271
Query: 257 ADEDILEHIC---YDFQDTQMMELLRPSLEEAFFIQNQ-QYIGKR---GATVGVTREKMI 309
+D++I E + +QD + + + Q +YIG R G R
Sbjct: 272 SDQEIFELVAGAEASYQDLFAPSIEECAKLNIYTAQQALEYIGARVKVNRRAGANRLPPH 331
Query: 310 KYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLA 369
+ A E+L +L H+ + KA Y G + R+L+ + DDRD+ GNKRL+LA
Sbjct: 332 EEALEVLAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDRDYVGNKRLELA 391
Query: 370 GPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIKAKTITGGLKYSLATG 424
G LL LF LF+K D++ + K + D Q + + IT G+ +L+TG
Sbjct: 392 GQLLALLFEDLFKKFNSDLKLNIDKVLKKPHRTQEFDAYNQLTVHSDHITQGMVRALSTG 451
Query: 425 NWGQGNAAGTRAGVSQVLNCLTYAS--------TFTYYLSWKLAKPRQLHNSQWGMMCPA 476
NW RAGV+ VL+ L+Y S T + + K++ PR L SQ+GM+C +
Sbjct: 452 NWSLKRFKMERAGVTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRSLQASQFGMLCTS 511
Query: 477 ETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
+TPEG+ACGLVKNLALM +IT PI++ +G E+
Sbjct: 512 DTPEGEACGLVKNLALMTHITTDEEEEPIIKLAYAFGIED 551
>CGD|CAL0002357 [details] [associations]
symbol:orf19.5847 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 CGD:CAL0002357
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 EMBL:AACQ01000235 EMBL:AACQ01000236
RefSeq:XP_710802.1 RefSeq:XP_710813.1 STRING:Q59M52 GeneID:3647582
GeneID:3647593 KEGG:cal:CaO19.13269 KEGG:cal:CaO19.5847
Uniprot:Q59M52
Length = 1157
Score = 626 (225.4 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 168/519 (32%), Positives = 268/519 (51%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 81
W ++ A+ + KGLV+Q LDS++ F +++I+ ++ ++ + S +P + +I +
Sbjct: 42 WNLLPAFLKVKGLVKQHLDSYNYFVDVDLKKII-KANELVL---SDVDPEFYVKYLDIRV 97
Query: 82 SKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV--TK-RVIKKGHDGE--EVPIMLRS 136
++ + L RLR+LTYSAP+YVDV T+ R I + +D E +P+MLRS
Sbjct: 98 GHKSTSKPGVKEVILPPHECRLRDLTYSAPIYVDVEYTRGRKIIRHNDLEIGRMPVMLRS 157
Query: 137 SYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAY 196
+ C L S+ + ++ ECP D GGYF++NG+EKV++ QE++S N + V + K
Sbjct: 158 NKCMLEGMSEATMAQVEECPLDPGGYFVVNGTEKVILVQEQLSKNRIIV--EADEKKGIV 215
Query: 197 VAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFT 256
A V S + R T + + K S I +IPI+I+ +A G
Sbjct: 216 QASVTS--STHERKSKTYVITKNDKIYLKHNS-----------ISEDIPIVIILKAAGIV 262
Query: 257 ADEDILEHIC---YDFQDTQMMELLRPSLEEAFFIQNQ-QYIGKRGATV---GVTREKMI 309
+D +IL+ +C ++QD ++ + E F Q Y+GKR T+ G + +
Sbjct: 263 SDLEILQLVCGSDSNYQDLFVVNFEEAARLEVFTQQQALYYVGKRVKTIRRAGAPKLSQL 322
Query: 310 KYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLA 369
+ E + ++ H+ D +KA Y + R+++ + DDRD+ GNKRL+LA
Sbjct: 323 QEGIEAIATTIIAHLTVSDLQFREKALYIATMARRVVMAMHNPKMVDDRDYVGNKRLELA 382
Query: 370 GPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIKAKTITGGLKYSLATG 424
G L+ LF LF+K D ++ + K + D L I + IT GL +++TG
Sbjct: 383 GQLMSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINIHSNNITMGLNRAISTG 442
Query: 425 NWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQWGMMCPA 476
NW RAGV+ VL+ L+Y S + S K++ PR L SQ+GM+C A
Sbjct: 443 NWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTA 502
Query: 477 ETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
+TPEG+ACGLVKNLALM +IT P+ + G E
Sbjct: 503 DTPEGEACGLVKNLALMTHITTDDEEAPVKKLCIALGCE 541
>FB|FBgn0004463 [details] [associations]
symbol:RpIII128 "RNA polymerase III 128kD subunit"
species:7227 "Drosophila melanogaster" [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS;NAS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE013599 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
EMBL:X58826 EMBL:AY121645 PIR:S16894 RefSeq:NP_523706.1
UniGene:Dm.2692 ProteinModelPortal:P25167 SMR:P25167 IntAct:P25167
MINT:MINT-285299 STRING:P25167 PaxDb:P25167
EnsemblMetazoa:FBtr0087977 GeneID:36289 KEGG:dme:Dmel_CG8344
CTD:36289 FlyBase:FBgn0004463 GeneTree:ENSGT00690000102214
InParanoid:P25167 OMA:DMIMNPH OrthoDB:EOG4C2FRC PhylomeDB:P25167
ChiTaRS:RpIII128 GenomeRNAi:36289 NextBio:797763 Bgee:P25167
GermOnline:CG8344 Uniprot:P25167
Length = 1137
Score = 616 (221.9 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 164/516 (31%), Positives = 266/516 (51%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 81
W ++ A+ + KGLV+Q +DSF+ F +++IV + + S +P + ++ +
Sbjct: 35 WKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVT----SGADPLFYLKYLDVRV 90
Query: 82 SKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVPIMLRS 136
KP + + T RLR+ TYSAP+ VD+ T+R+ + +P+MLR
Sbjct: 91 GKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLRC 150
Query: 137 SYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAY 196
S C L S+ L++L ECP D GGYF++ G EKV++ QE++S N K +
Sbjct: 151 SNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWN------KMLTEDFNG 204
Query: 197 VAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFT 256
V + C + S + S V LS+ G+Y + + +IPI+++F+ALG
Sbjct: 205 VVQ-CQVTSSTHEKKSRTLV--LSK-------HGKY-YLKHNSMTDDIPIVVIFKALGVV 253
Query: 257 ADEDILEHICYDFQDTQMMEL-LRPSLEEAFFIQNQ--QYIGKRGATV---GVTREKMIK 310
+D++I I D + L + F Q + +Y+G + T + +
Sbjct: 254 SDQEIQSLIGIDSKSQNRFGASLIDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTPSE 313
Query: 311 YAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 370
A+E+L +L HV +F KA Y ++ R++ L + DDRD+YGNKRL+LAG
Sbjct: 314 EARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRLELAG 373
Query: 371 PLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGLKYSLATGNWGQ 428
LL +F LF+++ ++++ K + K ++A IT GL+ ++++GNW
Sbjct: 374 SLLSMMFEDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMRAAQITAGLESAISSGNWTI 433
Query: 429 GNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQWGMMCPAETPE 480
RAGV+QVL+ L+Y S + + K++ PR L SQWGM+CP++TPE
Sbjct: 434 KRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPE 493
Query: 481 GQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
G+ACGLVKNLALM +IT P++ G E+
Sbjct: 494 GEACGLVKNLALMTHITTEVEERPVMIVAFNAGVED 529
>SGD|S000005733 [details] [associations]
symbol:RET1 "Second-largest subunit of RNA polymerase III"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IGI;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005733 PANTHER:PTHR20856 EMBL:BK006948
GO:GO:0046872 GO:GO:0003677 GO:GO:0005666 GO:GO:0003899
Reactome:REACT_83470 EMBL:M38723 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 Reactome:REACT_87991
GO:GO:0042797 HOGENOM:HOG000222962 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH OrthoDB:EOG4K6KC8
EMBL:Z75115 PIR:S67099 RefSeq:NP_014850.1 ProteinModelPortal:P22276
DIP:DIP-997N IntAct:P22276 MINT:MINT-644049 STRING:P22276
PaxDb:P22276 PeptideAtlas:P22276 EnsemblFungi:YOR207C GeneID:854382
KEGG:sce:YOR207C CYGD:YOR207c NextBio:976523 Genevestigator:P22276
GermOnline:YOR207C Uniprot:P22276
Length = 1149
Score = 614 (221.2 bits), Expect = 6.0e-59, P = 6.0e-59
Identities = 175/520 (33%), Positives = 265/520 (50%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 81
W ++ A+ + KGLV+Q LDSF+ F +++I+ + I S +P + +I +
Sbjct: 45 WHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLIL----SDVDPEFYLKYVDIRV 100
Query: 82 SKPMMTES-DGETATLFLKAARLRNLTYSAPLYVDV--TK-RVIKKGHDGE--EVPIMLR 135
K + + D T RLR++TYSAP+YVD+ T+ R I D E +PIMLR
Sbjct: 101 GKKSSSSTKDYLTPP---HECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLR 157
Query: 136 SSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA 195
S+ C LY + + +L ECP D GGYFI+NG+EKV++ QE++S N + V + K
Sbjct: 158 SNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV--EADEKKGI 215
Query: 196 YVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGF 255
A V S + R T + K G I+ I EIPI I+ +A G
Sbjct: 216 VQASVTS--STHERKSKTYVI-------TKNGK----IYLKHNSIAEEIPIAIVLKACGI 262
Query: 256 TADEDILEHICYD---FQDTQMMELLRPSLEEAFFIQNQ-QYIGKRGATVGVTREKMIKY 311
+D +I++ +C + +QD + L S + + Q +YIG + T+ + +++
Sbjct: 263 LSDLEIMQLVCGNDSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQE 322
Query: 312 AKEILQKEMLPH--VGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLA 369
E + ++ H V DF E KA Y + R+++ + DDRD+ GNKRL+LA
Sbjct: 323 GIEAIATTVIAHLTVEALDFRE--KALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELA 380
Query: 370 GPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIKAKTITGGLKYSLATG 424
G L+ LF LF+K D + + K + D L + + IT GL +++TG
Sbjct: 381 GQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTG 440
Query: 425 NWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQWGMMCPA 476
NW RAGV+ VL+ L+Y S + S K++ PR L SQ+GM+C A
Sbjct: 441 NWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTA 500
Query: 477 ETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
+TPEG+ACGLVKNLALM +IT PI + G E+
Sbjct: 501 DTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVED 540
>ASPGD|ASPL0000054387 [details] [associations]
symbol:AN0321 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:BN001308 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:DMIMNPH EnsemblFungi:CADANIAT00002388 Uniprot:C8VU19
Length = 1225
Score = 612 (220.5 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 170/530 (32%), Positives = 274/530 (51%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 81
W ++ A+ + KGLV+Q +DS++ + +++IV+ S I R + HN F +IYL
Sbjct: 104 WNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSNTI--RSDVDHN--FYIKFTDIYL 159
Query: 82 SKPMMTESDGETATLFLKAA------RLRNLTYSAPLYVDVT-----KRVIKKGHDGEEV 130
P + + T F ++ RLR+ TY+AP+ VD +RV +KG +
Sbjct: 160 GFPRRADEPQDVRTEFEESTVTPHECRLRDTTYAAPIQVDFEYIRGRQRVRRKGVSIGRM 219
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
P+MLRSS C L + +T L ECP D GGYFI+NG+EKV++ QE++S N + V +
Sbjct: 220 PVMLRSSKCVLGNKTPAQMTVLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV--ETD 277
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILF 250
P K A V S S N S ++ +L + Y+ + + +IPI+IL
Sbjct: 278 PKKEIVQASVTS---SSNERKSKSYI-ILKKDRL-------YVKHNV--LSEDIPIVILL 324
Query: 251 RALGFTADEDILEHIC-YD--FQDTQMMELLRPSLEEAFFIQNQQYIGKRGATVGVTREK 307
+A+G D++++ + D +Q+ + +++ F Q QQ + G+ + + R++
Sbjct: 325 KAMGIHTDKEMMLLVAGVDKVYQEDFAINF-EEAIKVGVFTQ-QQALDWIGSRIKINRKQ 382
Query: 308 M------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHY 361
M ++ A E + ++ H+ D KA Y ++ R+L+ DDRD+
Sbjct: 383 MSYRRTHVQEAVEAIASVIISHIEVKDMNFRPKAIYVANMARRVLMAKNDAALVDDRDYL 442
Query: 362 GNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA-----IKAKTITGG 416
GNKRL+LAG LL LF LF+K D++ + K ++ V A + + IT G
Sbjct: 443 GNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRVEAFDAWSVIGMHSNHITQG 502
Query: 417 LKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNS 468
+ +++TGNW RAGV+ VL+ L+Y + + + K++ PR L S
Sbjct: 503 MNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPS 562
Query: 469 QWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
Q+GM+C A+TPEG+ACGLVKNLALM +IT PI + G E+ +
Sbjct: 563 QFGMICLADTPEGEACGLVKNLALMTHITTNDEEGPIKNLIFMLGAEDIQ 612
>DICTYBASE|DDB_G0288449 [details] [associations]
symbol:rpc2 "RNA polymerase III, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0016539 "intein-mediated
protein splicing" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR006141 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PROSITE:PS50817
PROSITE:PS50818 dictyBase:DDB_G0288449 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR
EMBL:AAFI02000111 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
InterPro:IPR003587 SMART:SM00306 GO:GO:0016539 TIGRFAMs:TIGR01443
TIGRFAMs:TIGR01445 HSSP:P08518 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 RefSeq:XP_636731.1
STRING:Q54IZ9 EnsemblProtists:DDB0216313 GeneID:8626608
KEGG:ddi:DDB_G0288449 KO:K03021 OMA:IRRIIMA Uniprot:Q54IZ9
Length = 1608
Score = 561 (202.5 bits), Expect = 9.9e-57, Sum P(2) = 9.9e-57
Identities = 150/491 (30%), Positives = 255/491 (51%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 81
W ++ A+ + +GLV+Q +DSF+ F M++IV + R ++++P F +I +
Sbjct: 40 WKLVPAFMKCRGLVKQHIDSFNFFINVEMKKIVKANE----RLTAENDPSYFVRFTDINV 95
Query: 82 SKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV----TKRVIKKG--HDGEEVPIMLR 135
P TE + ++ L + RLR++TYSAP++V++ K++I K H G +PIMLR
Sbjct: 96 GSPTSTEDNLDSVQLTPQRCRLRDMTYSAPIFVNIEYTRNKQIISKRDVHIGN-IPIMLR 154
Query: 136 SSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA 195
SS C L + + + + LGECP D GGYFI+ G EKV++ E++S N + + +K
Sbjct: 155 SSNCVLSKKTPEQMAALGECPMDPGGYFIVRGQEKVILNHEQLSKNRIII---EMDSKGL 211
Query: 196 YVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILFRALG 254
A V S + SRT + Y+ H T +IP+ I+ + +G
Sbjct: 212 PSASVTSSTHERK-----------SRTGVTLKNEKLYLKHNTFG---EDIPVAIVLKGMG 257
Query: 255 FTADEDILEHICYD--FQDT---QMMELLRPSLEEAFFIQNQQYIGKR----GATVGVTR 305
D+++ + + D F + + E + + A Q Y+G R GV
Sbjct: 258 VETDQEMAQLVGSDDVFLNAITPSLEECQKCGVHTA--AQALDYLGSRIKVFRRPYGVQN 315
Query: 306 EKM-IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNK 364
+K + A++IL +L HV + K Y +I R+++ + + DD+D+YGNK
Sbjct: 316 KKTKSEEARDILAGVVLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKSCLDDKDYYGNK 375
Query: 365 RLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV---DNGKDVNLQFAIKAKTITGGLKYSL 421
R++L+G L+ LF F+K +++ V + + + ++++L I+ TIT G +++
Sbjct: 376 RIELSGQLISLLFEDCFKKFQSELKKSVDQAIAKANRAENLDLPKLIRTDTITNGFTHAI 435
Query: 422 ATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQWGMM 473
++G W R+GVSQVL+ L+Y S + + K+A PR L SQWGM+
Sbjct: 436 SSGQWNLKRFRMERSGVSQVLSRLSYISCMGMMTRIQSQFEKTRKVAGPRSLQPSQWGML 495
Query: 474 CPAETPEGQAC 484
CP++TPEG+AC
Sbjct: 496 CPSDTPEGEAC 506
Score = 67 (28.6 bits), Expect = 9.9e-57, Sum P(2) = 9.9e-57
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 484 CGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
CGLVKN ALM ++T + P+L G ++
Sbjct: 970 CGLVKNFALMSHVTTDDSEGPLLRLAYNLGVQD 1002
>GENEDB_PFALCIPARUM|PFL0330c [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase III
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE014188 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA
RefSeq:XP_001350475.1 ProteinModelPortal:Q8I5X9
EnsemblProtists:PFL0330c:mRNA GeneID:811119 KEGG:pfa:PFL0330c
EuPathDB:PlasmoDB:PF3D7_1206600 ProtClustDB:CLSZ2444941
Uniprot:Q8I5X9
Length = 1450
Score = 376 (137.4 bits), Expect = 9.5e-51, Sum P(2) = 9.5e-51
Identities = 120/413 (29%), Positives = 211/413 (51%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 81
W ++ AY + KGLV+Q ++S++ F + ++ I++ + + I+ + + +F +I +
Sbjct: 243 WKLLPAYLKVKGLVKQHIESYNYFIKREIKTIMNATTNKIIKSDIDEH--FYVEFLDITV 300
Query: 82 SKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT----KRVIKKGH-DGEEVPIMLRS 136
P + E+ ET L + R R+LTYSAP+YVDV +I K + + +P+MLRS
Sbjct: 301 GTPSVEENMIETK-LTPQICRQRDLTYSAPIYVDVEYVKGNSIITKNNVEIGRLPVMLRS 359
Query: 137 SYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAY 196
C L S++ L +LGECPYD GGYFI+ G+E+VL+ QE++S N + V + N A
Sbjct: 360 DICVLNNKSEEELMKLGECPYDPGGYFIVKGTERVLLMQEQLSKNRIIVEMDIKHNICAT 419
Query: 197 VAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFT 256
+ + AES++R V ++ K S +I +I + I+ RA+G+
Sbjct: 420 ITS--TTAESKSR---CAIVYKNNKLYLKHNS----------FIE-DIGVCIILRAMGYE 463
Query: 257 ADEDILEHICY--DFQDTQMMELLRPSLEEAFF-IQNQQYIGK----RGATVGV---TRE 306
+D++I + I ++ + ++ L E + YIGK R G +E
Sbjct: 464 SDQEIFQMIGSHKNYVNGILLSLYELYNENIKTNLDALLYIGKKIRPRLLAKGFFSSMKE 523
Query: 307 KMIKYAKEILQK--EMLPHVGTGDFCETKKAYYFGH-------IIHRLLLCALGRRAEDD 357
K +K K+I+++ + L V + K Y F + +I R+L A + DD
Sbjct: 524 KQVKNEKDIIEEGLDFLSRVLLSHI-QQKSKYDFRNKARCICLMIRRVLDSANNKNEIDD 582
Query: 358 RDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKA 410
+D+YGNKRL+LAG L+ LF L+++ ++ + + + N +++
Sbjct: 583 KDYYGNKRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYNSKLRS 635
Score = 196 (74.1 bits), Expect = 9.5e-51, Sum P(2) = 9.5e-51
Identities = 49/138 (35%), Positives = 76/138 (55%)
Query: 388 VRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTY 447
+RS DN DV + IT G++ +++TGNW ++GVSQVL+ L++
Sbjct: 633 LRSTGNNMNDNYPDVFRN--LPKDIITRGMQTAISTGNWNIKRFKMEKSGVSQVLSRLSF 690
Query: 448 ASTF--------TYYLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIG 499
+ + K++ PR L SQWG++CP +TPEG++CGLVKNLALM ++T
Sbjct: 691 IACIGMMTRLNSQFEKGRKVSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTND 750
Query: 500 SAAYP-ILEFLEEWGTEN 516
+ ++E L G E+
Sbjct: 751 NENNENLIEILYTLGVED 768
>UNIPROTKB|Q8I5X9 [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=ISS] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014188 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA RefSeq:XP_001350475.1
ProteinModelPortal:Q8I5X9 EnsemblProtists:PFL0330c:mRNA
GeneID:811119 KEGG:pfa:PFL0330c EuPathDB:PlasmoDB:PF3D7_1206600
ProtClustDB:CLSZ2444941 Uniprot:Q8I5X9
Length = 1450
Score = 376 (137.4 bits), Expect = 9.5e-51, Sum P(2) = 9.5e-51
Identities = 120/413 (29%), Positives = 211/413 (51%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYL 81
W ++ AY + KGLV+Q ++S++ F + ++ I++ + + I+ + + +F +I +
Sbjct: 243 WKLLPAYLKVKGLVKQHIESYNYFIKREIKTIMNATTNKIIKSDIDEH--FYVEFLDITV 300
Query: 82 SKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT----KRVIKKGH-DGEEVPIMLRS 136
P + E+ ET L + R R+LTYSAP+YVDV +I K + + +P+MLRS
Sbjct: 301 GTPSVEENMIETK-LTPQICRQRDLTYSAPIYVDVEYVKGNSIITKNNVEIGRLPVMLRS 359
Query: 137 SYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAY 196
C L S++ L +LGECPYD GGYFI+ G+E+VL+ QE++S N + V + N A
Sbjct: 360 DICVLNNKSEEELMKLGECPYDPGGYFIVKGTERVLLMQEQLSKNRIIVEMDIKHNICAT 419
Query: 197 VAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFT 256
+ + AES++R V ++ K S +I +I + I+ RA+G+
Sbjct: 420 ITS--TTAESKSR---CAIVYKNNKLYLKHNS----------FIE-DIGVCIILRAMGYE 463
Query: 257 ADEDILEHICY--DFQDTQMMELLRPSLEEAFF-IQNQQYIGK----RGATVGV---TRE 306
+D++I + I ++ + ++ L E + YIGK R G +E
Sbjct: 464 SDQEIFQMIGSHKNYVNGILLSLYELYNENIKTNLDALLYIGKKIRPRLLAKGFFSSMKE 523
Query: 307 KMIKYAKEILQK--EMLPHVGTGDFCETKKAYYFGH-------IIHRLLLCALGRRAEDD 357
K +K K+I+++ + L V + K Y F + +I R+L A + DD
Sbjct: 524 KQVKNEKDIIEEGLDFLSRVLLSHI-QQKSKYDFRNKARCICLMIRRVLDSANNKNEIDD 582
Query: 358 RDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKA 410
+D+YGNKRL+LAG L+ LF L+++ ++ + + + N +++
Sbjct: 583 KDYYGNKRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYNSKLRS 635
Score = 196 (74.1 bits), Expect = 9.5e-51, Sum P(2) = 9.5e-51
Identities = 49/138 (35%), Positives = 76/138 (55%)
Query: 388 VRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTY 447
+RS DN DV + IT G++ +++TGNW ++GVSQVL+ L++
Sbjct: 633 LRSTGNNMNDNYPDVFRN--LPKDIITRGMQTAISTGNWNIKRFKMEKSGVSQVLSRLSF 690
Query: 448 ASTF--------TYYLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIG 499
+ + K++ PR L SQWG++CP +TPEG++CGLVKNLALM ++T
Sbjct: 691 IACIGMMTRLNSQFEKGRKVSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTND 750
Query: 500 SAAYP-ILEFLEEWGTEN 516
+ ++E L G E+
Sbjct: 751 NENNENLIEILYTLGVED 768
>TAIR|locus:2153323 [details] [associations]
symbol:NRPC2 "nuclear RNA polymerase C2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002688 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03021 OMA:DMIMNPH IPI:IPI00530040 RefSeq:NP_199327.4
UniGene:At.9250 ProteinModelPortal:F4KD38 PRIDE:F4KD38
EnsemblPlants:AT5G45140.1 GeneID:834550 KEGG:ath:AT5G45140
Uniprot:F4KD38
Length = 1161
Score = 528 (190.9 bits), Expect = 1.1e-49, P = 1.1e-49
Identities = 152/523 (29%), Positives = 262/523 (50%)
Query: 24 VISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSK 83
++ + + +GLV+Q LDSF+ F + +IV ++ I S +P F ++ + +
Sbjct: 35 LVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRIT----STVDPSIYLRFKKVRVGE 90
Query: 84 PMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK------RVIKKGHDGE---EVPIML 134
P + + + RL ++TY+AP++V++ K D +PIML
Sbjct: 91 PSIINVN-TVENINPHMCRLADMTYAAPIFVNIEYVHGSHGNKAKSAKDNVIIGRMPIML 149
Query: 135 RSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKY 194
RS C L+ ++ L LGECP D GGYFII G+EKVL+ QE++S N + + ++ N
Sbjct: 150 RSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDSDKKGNIN 209
Query: 195 AYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALG 254
A V M +S+ V + + ++H +++ +IPIII+ +A+G
Sbjct: 210 ASVTSSTEMTKSKT-------VIQMEKEKIY-----LFLHR---FVK-KIPIIIVLKAMG 253
Query: 255 FTADEDILEHICYDFQ-DTQMMELLRPSLEEAFFIQNQ--QYIGKRGATV--GVTREKMI 309
+D++I++ + D + ++ + + E Q Q Y+ + + G EK
Sbjct: 254 MESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISYGTPPEKDG 313
Query: 310 KYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLA 369
+ A IL+ L HV D +K +Y G ++ R++ L + A DD+D+ GNKRL+L+
Sbjct: 314 R-ALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELS 372
Query: 370 GPLLGGLFRTLFRKLTGDVRSYVQKCVDNG-KDVNLQFAI-----KAKTITGGLKYSLAT 423
G L+ LF LF+ + + V ++ + F+ +I+ GL+ +L+T
Sbjct: 373 GQLISLLFEDLFKTMLSEAIKNVDHILNKPIRASRFDFSQCLNKDSRYSISLGLERTLST 432
Query: 424 GNWGQGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLHNSQWGMMCP 475
GN+ R G++QVL L++ + + S K++ PR L SQWGM+CP
Sbjct: 433 GNFDIKRFRMHRKGMTQVLTRLSFIGSMGFITKISPQFEKSRKVSGPRSLQPSQWGMLCP 492
Query: 476 AETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
+TPEG++CGLVKNLALM ++T P++ + G + E
Sbjct: 493 CDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDLE 535
>TAIR|locus:2095233 [details] [associations]
symbol:NRPD2A "nuclear RNA polymerase D2A" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0031047
"gene silencing by RNA" evidence=IMP] [GO:0000418 "DNA-directed RNA
polymerase IV complex" evidence=IDA;IPI] [GO:0005720 "nuclear
heterochromatin" evidence=IDA] [GO:0006306 "DNA methylation"
evidence=IMP;IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IGI;IMP] [GO:0000419 "DNA-directed RNA
polymerase V complex" evidence=IDA;IPI] [GO:0030880 "RNA polymerase
complex" evidence=IPI] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0050776 "regulation of immune response"
evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0050776 GO:GO:0006355 GO:GO:0050832
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 EMBL:AP000377
GO:GO:0006351 UniGene:At.37653 GO:GO:0030422 GO:GO:0006306
GO:GO:0003899 GO:GO:0000418 GO:GO:0000419 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 EMBL:AY862891 EMBL:AY935711 EMBL:AK176111
IPI:IPI00546801 RefSeq:NP_001189957.1 RefSeq:NP_189020.2
ProteinModelPortal:Q9LK40 SMR:Q9LK40 STRING:Q9LK40 PaxDb:Q9LK40
PRIDE:Q9LK40 EnsemblPlants:AT3G23780.1 EnsemblPlants:AT3G23780.2
GeneID:821960 KEGG:ath:AT3G23780 GeneFarm:4224 TAIR:At3g23780
InParanoid:Q9LK40 KO:K16252 OMA:CRICESA PhylomeDB:Q9LK40
ProtClustDB:CLSN2681572 Genevestigator:Q9LK40 Uniprot:Q9LK40
Length = 1172
Score = 365 (133.5 bits), Expect = 4.4e-39, Sum P(2) = 4.4e-39
Identities = 118/414 (28%), Positives = 192/414 (46%)
Query: 114 VDVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLI 173
+DV K+ I G +P+M++S C + ++ + G+C +D+GGYF+I G+EKV I
Sbjct: 164 LDVKKQDILIG----SIPVMVKSILCKTSEKGKENCKK-GDCAFDQGGYFVIKGAEKVFI 218
Query: 174 AQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI 233
AQE+M T +++ P ++ +E +NR F+ LS +
Sbjct: 219 AQEQMCTKRLWI--SNSPWTVSFRSE-----NKRNR-----FIVRLSENEKAEDYKRREK 266
Query: 234 HATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQY 293
T+ ++ TEIP+ +LF ALG ++D++ ++ I +D D + L S+ A +
Sbjct: 267 VLTVYFLSTEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASIHVADAVCEAFR 326
Query: 294 IGKRGATVGVTREKMIKYAKEILQKEMLP-HVGTGDFCETKKAYYFGHIIHRLLLCALGR 352
G T + K K+ E L ++ G KKA + G+++ LL G+
Sbjct: 327 CGNNALTYVEQQIKSTKFPPAESVDECLHLYLFPGLQSLKKKARFLGYMVKCLLNSYAGK 386
Query: 353 RAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN-LQFAIKAK 411
R ++RD + NKR++LAG LL R + +QK + D+ ++ + A
Sbjct: 387 RKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQKHLSGDGDLKPIEHYLDAS 446
Query: 412 TITGGLKYSLATGNWGQ---------GNAAGT-RAGVSQVLNCLTYASTFTYYLSWKLAK 461
IT GL + +TG W G A RA Q L L Y K+
Sbjct: 447 VITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQVLYTG-KVGD 505
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
R H S WG +C TP+G+ CGLVKN++L+ ++ S ++E L G E
Sbjct: 506 ARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQSLE-SVVEKLFACGME 558
Score = 108 (43.1 bits), Expect = 4.4e-39, Sum P(2) = 4.4e-39
Identities = 30/105 (28%), Positives = 54/105 (51%)
Query: 26 SAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD-------FAE 78
+++F++ GL+ QL+S++ F ++ +Q + ++ + P + +D F E
Sbjct: 40 TSFFDKYGLISHQLNSYNYFIEHGLQNVFQSFGEMLVEPSFDVVKKKDNDWRYATVKFGE 99
Query: 79 IYLSKPMMTESDGETATLFLK-AARLRNLTYSAPLYVDVTKRVIK 122
+ + KP D E FL ARL+N+TYSA + V+V V K
Sbjct: 100 VTVEKPTFFSDDKELE--FLPWHARLQNMTYSARIKVNVQVEVFK 142
>ASPGD|ASPL0000012082 [details] [associations]
symbol:AN3933 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:BN001302 EMBL:AACD01000064
GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222963
OrthoDB:EOG4W11N4 OMA:FNLLIFM RefSeq:XP_661537.1 STRING:Q5B697
EnsemblFungi:CADANIAT00004761 GeneID:2873357 KEGG:ani:AN3933.2
Uniprot:Q5B697
Length = 1231
Score = 189 (71.6 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 101/397 (25%), Positives = 180/397 (45%)
Query: 26 SAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR-PESQHNPGQQS---DFAEIYL 81
+A FE+ G++ L D + + E+V+ + + R E + P + E++L
Sbjct: 48 NALFEKGGIIEAGLK--DIGTRTFLDEVVETAEQKQQRLAEGRRAPRRNKLHVRIKEVFL 105
Query: 82 SKPMMTESDGETA---TLFLKAARLRNLTYSAPLYVDVTKRV-----IKKGHDGEEVPIM 133
KP + ++ TA ++ R R+ TY L + RV ++ + +VPIM
Sbjct: 106 EKPTIPLTNKYTARNRNIYPSECRERHATYRGKLRAKIEYRVNNGDWTEQVRELGQVPIM 165
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNH-VYVFKKRQPN 192
LR++ C L + + L + E + GGYFI+NG+EK++ N+ + + + N
Sbjct: 166 LRTNRCYLEKATPAELVQHKEESEELGGYFIVNGNEKLIRMLIVGRRNYPMAIVRNTFTN 225
Query: 193 K-YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFR 251
+ +AY ++ S RP T +L + G + ++ YI IP++++ +
Sbjct: 226 RGHAY-SKFGIQIRSV-RPDQTSQTNVLHYLN-DGNVTFRFSWRKNEYI---IPVVMILK 279
Query: 252 ALGFTADEDILEHICYDFQD--------TQMMELLRPSLEEAFFIQNQQ----YIGKRGA 299
AL T D +I E I T +ELL + + A+ + ++ +IG++
Sbjct: 280 ALVETNDREIFEGIVGSASSEGINNTFVTDRVELLLRTYK-AYKLHSRSECRAFIGEKFK 338
Query: 300 TV-GVTREKMIKYA-KEILQKEMLPHVGTGDFCETK---KAYYFGHIIHRLLLCALGRRA 354
V GV + + A E L+K +LPH+G + ET+ K +I +L G A
Sbjct: 339 PVLGVPADTPNEEAGTEFLRKVVLPHLGNQNVTETQDYDKFKMLMFMIRKLYALVAGDCA 398
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
D+ D N+ + L G L G L + +L VRS+
Sbjct: 399 PDNPDAVSNQEILLGGFLYGMLLK---ERLDEWVRSF 432
Score = 103 (41.3 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 26/92 (28%), Positives = 45/92 (48%)
Query: 411 KTITGGLKYSLATGNWGQGNAAGTR--AG---VSQVLNCLTYASTF------TYYLSWKL 459
+ I G ++Y L+TGN + +G +++ +N + S F +++ K
Sbjct: 467 ENIGGAMEYFLSTGNLVSPTGLDLQQTSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKT 526
Query: 460 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 491
R+L WG +CP TP+G CGL+ +LA
Sbjct: 527 TTVRKLLPESWGFLCPVHTPDGSPCGLLNHLA 558
Score = 47 (21.6 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAA-GTRAGVSQVLNC 444
C D G ++ Q A+ + G K +A N G+AA G AG+ + C
Sbjct: 1128 CRDCGSFLSTQVAVSS---AGSSKARMAAKN-SSGSAALGGNAGIVRCRRC 1174
>CGD|CAL0002109 [details] [associations]
symbol:RPA135 species:5476 "Candida albicans" [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 CGD:CAL0002109 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000024 GO:GO:0003899
eggNOG:COG0085 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 RefSeq:XP_720354.1 RefSeq:XP_888689.1
STRING:Q5AFK6 GeneID:3637996 GeneID:3704205 KEGG:cal:CaO19.7062
KEGG:cal:CaO19_7062 Uniprot:Q5AFK6
Length = 1166
Score = 187 (70.9 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 89/373 (23%), Positives = 170/373 (45%)
Query: 79 IYLSKPMMTESDGETAT--LFLKAARLRNLTYSAPLYVDVTKRV-----IKKGHDGEEVP 131
+ L+KP + +D + F R R +TY + L ++VT V + + + ++P
Sbjct: 84 VQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDEEEVSEVREAGQIP 143
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNH-VYVFKKRQ 190
IML+S+ C L + S L E E + GGYFI+NG EK++ NH + + +
Sbjct: 144 IMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSF 203
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILF 250
N+ A + S RP T +L + G + ++ ++ +P++++
Sbjct: 204 GNRGASYTKFGIQIRSV-RPDQTSQTNVLHYLN-DGNVTFRFSWRKNEFL---VPVVMIL 258
Query: 251 RALGFTADEDILEHIC-YDFQD---TQMMELLRPSLEEAFFIQNQQ----YIGKRGATV- 301
+AL T D +I + I D ++ T +ELL + + + + +QQ Y+G + V
Sbjct: 259 KALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYK-TYNLYSQQETLAYLGDKFRVVF 317
Query: 302 GVTREKM-IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDH 360
G + + I+ KE+L++ +L H+ + + F +I +L G A D+ D
Sbjct: 318 GASPDMSDIEVGKEVLKRIVLVHLPNN--ADKFRMLLF--MIRKLYSLVAGDCAPDNPDA 373
Query: 361 YGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQ--------FAIKAKT 412
++ + L G L G + + + +++ +Q ++ G +N F+ +
Sbjct: 374 TQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRGVGINFDDRKYMTRVFSRINEN 433
Query: 413 ITGGLKYSLATGN 425
I L+Y L+TGN
Sbjct: 434 IGQKLQYFLSTGN 446
Score = 101 (40.6 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 383 KLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTR--AG--- 437
++ D+ V D+ K + F+ + I L+Y L+TGN + + +G
Sbjct: 404 QIQSDINRGVGINFDDRKYMTRVFSRINENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTV 463
Query: 438 VSQVLNCLTYASTF------TYYLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 491
V++ +N + S F +++ K R+L WG +CP TP+G CGL+ +L+
Sbjct: 464 VAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLS 523
>WB|WBGene00008781 [details] [associations]
symbol:rpoa-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0043652 "engulfment of apoptotic cell" evidence=IMP]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0003677 GO:GO:0006351 GO:GO:0040035 GO:GO:0043652
GO:GO:0003899 HSSP:P08518 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
HOGENOM:HOG000222963 EMBL:Z75535 PIR:T20870 RefSeq:NP_492476.1
ProteinModelPortal:Q27493 SMR:Q27493 STRING:Q27493 PaxDb:Q27493
EnsemblMetazoa:F14B4.3 GeneID:172752 KEGG:cel:CELE_F14B4.3
UCSC:F14B4.3 CTD:172752 WormBase:F14B4.3 InParanoid:Q27493
NextBio:876871 Uniprot:Q27493
Length = 1127
Score = 165 (63.1 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 104/411 (25%), Positives = 170/411 (41%)
Query: 76 FAEIYLSKPMM---TESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE--- 129
F L KP + + +T L R R LTY+ L V + V D E
Sbjct: 45 FTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIIL 104
Query: 130 --VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKV---LIAQEKMSTNHVY 184
VPIMLRS C L S+K L GE P ++GGYFI+NGSEKV LIA + +
Sbjct: 105 GKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFP--IA 162
Query: 185 VFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEI 244
+ +K K +E M S + + + + + + Q+ + Y+
Sbjct: 163 IIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQF-RREIFYV---- 217
Query: 245 PIIILFRALGFTADEDILEHICY-----DFQDTQMMELLRPSLEEAFFIQNQ--QYIGKR 297
P++ + +AL D I F + ++ +L EE Q + IG R
Sbjct: 218 PLMYIVKALTDKNDAVISAGFKRGRNQDQFYSSCILNMLAQCQEEEILNQEAAIRAIGSR 277
Query: 298 GATVGVTR----EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRR 353
R E ++ + I+++ +L H+ + + +K + ++ +L+ G
Sbjct: 278 FRVAVSDRVAPWEDDLEAGRFIIRECVLIHLDSDE----EKFHTLAYMTQKLIALVKGEC 333
Query: 354 AEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAK 411
A + D+ + ++G +L + R + G VR ++ + + KD L A +KA
Sbjct: 334 APETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEY-MSSRKDFILTSAAILKAL 392
Query: 412 ------TITGGLKYSLATGNWGQ--GNAAGTRAGVSQV---LNCLTYASTF 451
IT G+ Y LATGN G A +G S + +N L + S F
Sbjct: 393 GNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHF 443
Score = 114 (45.2 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 29/89 (32%), Positives = 44/89 (49%)
Query: 413 ITGGLKYSLATGNWGQ--GNAAGTRAGVSQV---LNCLTYASTF------TYYLSWKLAK 461
IT G+ Y LATGN G A +G S + +N L + S F +++ +
Sbjct: 400 ITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTD 459
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNL 490
R+L WG +CP TP+G CGL+ ++
Sbjct: 460 VRKLRPEAWGFICPVHTPDGAPCGLLNHV 488
>SGD|S000006214 [details] [associations]
symbol:RPA135 "RNA polymerase I second largest subunit A135"
species:4932 "Saccharomyces cerevisiae" [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IDA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 SGD:S000006214
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 EMBL:Z71255
EMBL:U31900 EMBL:BK006949 EMBL:Z49919 GO:GO:0005736 GO:GO:0003899
GO:GO:0042790 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
HOGENOM:HOG000222963 OrthoDB:EOG4W11N4 EMBL:M62804 PIR:A39607
RefSeq:NP_015335.1 ProteinModelPortal:P22138 DIP:DIP-135N
IntAct:P22138 MINT:MINT-423299 STRING:P22138 PaxDb:P22138
PeptideAtlas:P22138 EnsemblFungi:YPR010C GeneID:856119
KEGG:sce:YPR010C CYGD:YPR010c OMA:FNLLIFM NextBio:981198
Genevestigator:P22138 GermOnline:YPR010C Uniprot:P22138
Length = 1203
Score = 169 (64.5 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 84/377 (22%), Positives = 169/377 (44%)
Query: 78 EIYLSKPMMTE--SDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE-EV---- 130
++ ++KPM + S ++ +R R +Y L + + K + G + EV
Sbjct: 101 QVSIAKPMSNDGVSSAVERKVYPSESRQRLTSYRGKLLLKL-KWSVNNGEENLFEVRDCG 159
Query: 131 --PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNH-VYVFK 187
P+ML+S+ C L + S L + E + GGYFI+NG EK++ NH + + +
Sbjct: 160 GLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIR 219
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
N+ A + S RP T +L + G + ++ Y+ +P++
Sbjct: 220 PSFANRGASYSHYGIQIRSV-RPDQTSQTNVLHYLN-DGQVTFRFSWRKNEYL---VPVV 274
Query: 248 ILFRALGFTADEDILEHIC-YDFQD---TQMMELLRPSLEEAF-FIQNQ----QYIGKRG 298
++ +AL T+D +I + I D +D T +ELL ++ + +QN+ QY+G +
Sbjct: 275 MILKALCHTSDREIFDGIIGNDVKDSFLTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKF 334
Query: 299 ATV--GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAED 356
V + ++ +E+L + +L H+G + + F +I +L G + D
Sbjct: 335 RVVFQASPDQSDLEVGQEVLDRIVLVHLGKDGSQDKFRMLLF--MIRKLYSLVAGECSPD 392
Query: 357 DRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQ---FAIKA--- 410
+ D ++ + L G L G + + + ++ + V+ ++ G +N + + +
Sbjct: 393 NPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAINFKDKRYMSRVLMR 452
Query: 411 --KTITGGLKYSLATGN 425
+ I ++Y L+TGN
Sbjct: 453 VNENIGSKMQYFLSTGN 469
Score = 95 (38.5 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 25/92 (27%), Positives = 44/92 (47%)
Query: 411 KTITGGLKYSLATGNWGQGNAAGTR--AG---VSQVLNCLTYASTF------TYYLSWKL 459
+ I ++Y L+TGN + + +G V++ +N + S F +++ K
Sbjct: 455 ENIGSKMQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKT 514
Query: 460 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 491
R+L WG +CP TP+G CGL+ + A
Sbjct: 515 TTVRKLLPESWGFLCPVHTPDGSPCGLLNHFA 546
>UNIPROTKB|F8VRU2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007642 InterPro:IPR015712 Pfam:PF04561
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC009721 GO:GO:0032549 EMBL:AC078992 EMBL:AC080012
HGNC:HGNC:30348 IPI:IPI01022585 ProteinModelPortal:F8VRU2
SMR:F8VRU2 Ensembl:ENST00000549569 ArrayExpress:F8VRU2 Bgee:F8VRU2
Uniprot:F8VRU2
Length = 170
Score = 181 (68.8 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 51/154 (33%), Positives = 80/154 (51%)
Query: 253 LGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATV----G 302
+G +D++I++ I + +M PSLEE F Q Q +YIG + G
Sbjct: 1 MGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGG 57
Query: 303 VTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYG 362
++ I+ A+E+L +L HV +F K Y ++ R++L A G DDRD+YG
Sbjct: 58 GPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYG 116
Query: 363 NKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
NKRL+LAG LL LF LF+K +++ + +
Sbjct: 117 NKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVI 150
>UNIPROTKB|F1NRJ5 [details] [associations]
symbol:F1NRJ5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
GeneTree:ENSGT00550000074993 EMBL:AADN02041199 IPI:IPI00820874
Ensembl:ENSGALT00000039028 Uniprot:F1NRJ5
Length = 760
Score = 135 (52.6 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 46/181 (25%), Positives = 77/181 (42%)
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
T+K Y + +L A G ED+ D N+ + AG L + V+
Sbjct: 228 TEKFYLLCMMTRKLCAFAKGECMEDNPDSLMNQEVLTAGQLFLMFLKERLENWLQSVKFV 287
Query: 392 VQKCVDNGK-DVNLQFAIKA----KTITGGLKYSLATGNWGQGNAAGTR--AGVSQV--- 441
++K + ++N +KA +T +Y LATGN G +G+ V
Sbjct: 288 LEKRTEKADININADSLMKAFNMTTDVTKSFEYLLATGNLRSKTGLGMLQDSGLCVVGDK 347
Query: 442 LNCLTYASTF------TYYLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY 495
LN + Y S F + + + R+L WG +CP +TP+G+ CGL+ ++ +
Sbjct: 348 LNFVRYLSHFRCIHRGSAFAQMRTTTVRKLLPESWGFLCPVDTPDGEPCGLMNHMTAVCE 407
Query: 496 I 496
I
Sbjct: 408 I 408
Score = 107 (42.7 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 115 DVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVL 172
D+ + IK H VPIM++S C LY S + L + E + GGYFIING EKV+
Sbjct: 12 DIPQGTIK--HPVGFVPIMVKSKLCNLYNLSPQELIQHHEEEEEMGGYFIINGLEKVI 67
>POMBASE|SPBP23A10.07 [details] [associations]
symbol:rpa2 "DNA-directed RNA polymerase I complex
subunit Rpa2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=ISO] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=ISO] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PomBase:SPBP23A10.07 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
OMA:EVFAGVT GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222963 PIR:T50394 RefSeq:NP_595819.2 STRING:Q9P7X8
EnsemblFungi:SPBP23A10.07.1 GeneID:2541280 KEGG:spo:SPBP23A10.07
OrthoDB:EOG4W11N4 NextBio:20802391 Uniprot:Q9P7X8
Length = 1174
Score = 142 (55.0 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 77/332 (23%), Positives = 143/332 (43%)
Query: 78 EIYLSKPMMTESDGETAT--LFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE--EV--- 130
E+ ++KPM++ + + ++ AR R TY + L + + V E EV
Sbjct: 81 EVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSVNGGPRQSEMREVGMI 140
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNH-VYVFKKR 189
PIM+RS+ C L S L E + GGYFI+NG EK++ NH + +
Sbjct: 141 PIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRMLILPKRNHPTAIIRPS 200
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
N+ ++ ++ RP + L + G + ++ Y+ IP +++
Sbjct: 201 FANRGTSYSQY-GLSIRCVRPDQSSLTNTLHYLN-NGVTMFRFHWRKNEYL---IPSMMI 255
Query: 250 FRALGFTADEDILEHIC-YDFQDTQMME----LLRPSLEEAFFIQNQ--QYIGKRGATV- 301
+AL T+D++I E I D +T + + +LR + Q + QY+G + V
Sbjct: 256 LKALLETSDKEIFEGIVGKDLGNTFLTDRVELMLRAYKSYGLYSQTETLQYLGSKFRVVL 315
Query: 302 GVTREKM-IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDH 360
GV + ++ + +LQK +L H+ + + F +I +L G D+ D
Sbjct: 316 GVAEDLTDVEVGRFLLQKVVLVHLREAK--DKFRLLLF--MIRKLYALVAGECCADNPDS 371
Query: 361 YGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYV 392
++ + L G L G + + +R+ +
Sbjct: 372 PQHQEILLGGFLYGQILKEKIEDWLNSIRAQI 403
Score = 103 (41.3 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 27/86 (31%), Positives = 39/86 (45%)
Query: 417 LKYSLATGNWGQGNAAGTRAG-----VSQVLNCLTYASTF------TYYLSWKLAKPRQL 465
L+Y L+TGN + V++ LN + S F ++ K R+L
Sbjct: 437 LQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAELKTTTVRKL 496
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLA 491
WG MCP TP+G CGL+ +LA
Sbjct: 497 LPEAWGFMCPVHTPDGSPCGLLNHLA 522
>UNIPROTKB|F1NLV9 [details] [associations]
symbol:F1NLV9 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IEA]
[GO:0009303 "rRNA transcription" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0017126 "nucleologenesis"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737
GO:GO:0003677 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:AADN02041199 IPI:IPI00576768
Ensembl:ENSGALT00000014017 Uniprot:F1NLV9
Length = 1016
Score = 135 (52.6 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 46/181 (25%), Positives = 77/181 (42%)
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
T+K Y + +L A G ED+ D N+ + AG L + V+
Sbjct: 225 TEKFYLLCMMTRKLCAFAKGECMEDNPDSLMNQEVLTAGQLFLMFLKERLENWLQSVKFV 284
Query: 392 VQKCVDNGK-DVNLQFAIKA----KTITGGLKYSLATGNWGQGNAAGTR--AGVSQV--- 441
++K + ++N +KA +T +Y LATGN G +G+ V
Sbjct: 285 LEKRTEKADININADSLMKAFNMTTDVTKSFEYLLATGNLRSKTGLGMLQDSGLCVVGDK 344
Query: 442 LNCLTYASTF------TYYLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY 495
LN + Y S F + + + R+L WG +CP +TP+G+ CGL+ ++ +
Sbjct: 345 LNFVRYLSHFRCIHRGSAFAQMRTTTVRKLLPESWGFLCPVDTPDGEPCGLMNHMTAVCE 404
Query: 496 I 496
I
Sbjct: 405 I 405
Score = 107 (42.7 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 115 DVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVL 172
D+ + IK H VPIM++S C LY S + L + E + GGYFIING EKV+
Sbjct: 9 DIPQGTIK--HPVGFVPIMVKSKLCNLYNLSPQELIQHHEEEEEMGGYFIINGLEKVI 64
>ZFIN|ZDB-GENE-040426-1598 [details] [associations]
symbol:polr1b "polymerase (RNA) I polypeptide B"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
ZFIN:ZDB-GENE-040426-1598 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
EMBL:BC097040 IPI:IPI00859868 RefSeq:NP_956812.2 UniGene:Dr.117892
STRING:Q4V967 DNASU:325603 GeneID:325603 KEGG:dre:325603
InParanoid:Q4V967 NextBio:20809377 ArrayExpress:Q4V967
Uniprot:Q4V967
Length = 1132
Score = 135 (52.6 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 43/145 (29%), Positives = 69/145 (47%)
Query: 34 LVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESD-GE 92
LV+ ++SFD+ + + +V+ +E + F E + P +++
Sbjct: 37 LVKAHIESFDQAVTDGLCRVVEAIPPMEFLYKGDRI---SLSFVEAIIHTPSVSKGGISR 93
Query: 93 TATLFLKAARLRNLTYSAPLYVDVTKRV--IKKGHDGE---EVPIMLRSSYCTLYQNSQK 147
+F R R TY A L DV+ V + KG + ++PIM++S C L+ S K
Sbjct: 94 DLRVFPAECRGRRCTYRAKLVADVSWSVNGVPKGIIKQSLGQMPIMVKSKLCNLHGLSPK 153
Query: 148 ALTELGECPYDEGGYFIINGSEKVL 172
L E E + GGYFI+NG EKV+
Sbjct: 154 ELLEHHEEAEEMGGYFIVNGIEKVI 178
Score = 108 (43.1 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 30/103 (29%), Positives = 46/103 (44%)
Query: 413 ITGGLKYSLATGNWGQGNAAGT--RAG---VSQVLNCLTYASTF------TYYLSWKLAK 461
+T +Y LATGN G +G V+ LN + Y S F + +
Sbjct: 424 LTKAFEYLLATGNLMSKTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTT 483
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYP 504
R+L WG +CP TP+G+ CGL+ ++ + I + YP
Sbjct: 484 VRKLLPESWGFLCPVHTPDGEPCGLMNHMT--AHCEIVAPVYP 524
>UNIPROTKB|E2REX8 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
EMBL:AAEX03010908 RefSeq:XP_003639648.1 Ensembl:ENSCAFT00000011494
GeneID:100856298 KEGG:cfa:100856298 Uniprot:E2REX8
Length = 1135
Score = 125 (49.1 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 65/262 (24%), Positives = 108/262 (41%)
Query: 269 FQDTQMMELLRPSLEEAFFIQNQ--QYIGKR-GATVGVTREKMIKYAKEILQKEMLP-HV 324
F + ++LR +EE Q Q Y+G+R + + + A E L + + H+
Sbjct: 277 FFRNSVSQMLRIVMEEGCSTQKQVLNYLGERFRVKLSLPDWYPNEQAAEFLFNQCICIHL 336
Query: 325 GTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFR-- 382
+ T+K Y + +L A G ED+ D N+ + G L +
Sbjct: 337 KSN----TEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKMESW 392
Query: 383 ----KLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG--TRA 436
K+ D RS N +++ F + +T +Y LATGN G +
Sbjct: 393 LVSIKIALDKRSQKTNVSINTENLMRIFNL-GTDLTKPFEYLLATGNLRSKTGLGFLQDS 451
Query: 437 G---VSQVLNCLTYASTFTY------YLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLV 487
G V+ LN + Y S F + + R+L WG +CP TP+G+ CGL+
Sbjct: 452 GLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLM 511
Query: 488 KNL-ALMVYIT--IGSAAYPIL 506
+L A+ +T + +A+ P L
Sbjct: 512 NHLTAVCEVVTQCVYTASVPTL 533
Score = 118 (46.6 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 35/98 (35%), Positives = 51/98 (52%)
Query: 81 LSKPMMTESD-GETATLFLKAARLRNLTYSAPLYVDVTKRV--IKKGHDGE---EVPIML 134
+S PM+ + + + ++ R R TY L D++ V I KG + +PIM+
Sbjct: 82 ISPPMVPKGNICKELNIYPAECRGRRSTYRGKLTADISWAVNGISKGIIKQFLGYIPIMV 141
Query: 135 RSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVL 172
+S C L+ KAL E E + GGYFIING EKV+
Sbjct: 142 KSKLCNLHSLPPKALIEHHEEVEEMGGYFIINGIEKVI 179
>UNIPROTKB|C9JZW8 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase II subunit RPB2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007644 InterPro:IPR015712 Pfam:PF04563
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC069307 GO:GO:0032549 HGNC:HGNC:9188 IPI:IPI00894524
ProteinModelPortal:C9JZW8 SMR:C9JZW8 STRING:C9JZW8
Ensembl:ENST00000433463 ArrayExpress:C9JZW8 Bgee:C9JZW8
Uniprot:C9JZW8
Length = 76
Score = 164 (62.8 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 30/51 (58%), Positives = 42/51 (82%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ 72
W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E+QH G+
Sbjct: 20 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE 70
>UNIPROTKB|A6QLS0 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677
GO:GO:0009790 GO:GO:0009303 GO:GO:0007566 GO:GO:0005736
GO:GO:0003899 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 HOGENOM:HOG000222963 EMBL:DAAA02031075
EMBL:BC148064 IPI:IPI00708666 RefSeq:NP_001093762.1
UniGene:Bt.13051 STRING:A6QLS0 Ensembl:ENSBTAT00000018830
GeneID:282342 KEGG:bta:282342 InParanoid:A6QLS0 NextBio:20806137
Uniprot:A6QLS0
Length = 1135
Score = 121 (47.7 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 63/262 (24%), Positives = 109/262 (41%)
Query: 269 FQDTQMMELLRPSLEEAFFIQNQ--QYIGKR-GATVGVTREKMIKYAKEILQKEMLP-HV 324
F + ++LR +EE Q Q Y+G+R + + + A E L + + H+
Sbjct: 277 FFRNSVSQMLRIVMEEGCSTQKQVLNYLGERFRVKLSLPDWYPNEQAAEFLFNQCICIHL 336
Query: 325 GTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFR-- 382
+ T+K Y + +L A G E++ D N+ + G L +
Sbjct: 337 KSN----TEKFYMLCLMTRKLFALAKGECMEENPDSLMNQEVLTPGQLFLMFLKEKLEAW 392
Query: 383 ----KLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG--TRA 436
K+ D +S N +++ F++ +T +Y LATGN G +
Sbjct: 393 LVSIKIAIDKKSQKTNVSLNSENLMKIFSLGID-LTKPFEYLLATGNLRSKTGLGFLQDS 451
Query: 437 G---VSQVLNCLTYASTFTY------YLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLV 487
G V+ LN + Y S F + + R+L WG +CP TP+G+ CGL+
Sbjct: 452 GLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLM 511
Query: 488 KNL-ALMVYIT--IGSAAYPIL 506
+L A+ +T + +A+ P L
Sbjct: 512 NHLTAICEVVTQSVYTASIPAL 533
Score = 119 (46.9 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 34/76 (44%), Positives = 41/76 (53%)
Query: 102 RLRNLTYSAPLYVDVTKRV--IKKGHDGE---EVPIMLRSSYCTLYQNSQKALTELGECP 156
R R TY L D++ V I KG + VPIM++S C LY KAL E E
Sbjct: 104 RGRRSTYRGKLTADISWSVNGISKGVIKQFLGYVPIMVKSKLCNLYNLPPKALIEHHEEA 163
Query: 157 YDEGGYFIINGSEKVL 172
+ GGYFIING EKV+
Sbjct: 164 EEMGGYFIINGIEKVI 179
>RGD|620822 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005736 "DNA-directed RNA polymerase
I complex" evidence=IEA;ISO;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0007566 "embryo implantation"
evidence=IEA;ISO] [GO:0009303 "rRNA transcription"
evidence=IEA;ISO;IDA] [GO:0009790 "embryo development"
evidence=IEA;ISO] [GO:0017126 "nucleologenesis" evidence=IEA;ISO]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 122 (48.0 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 66/263 (25%), Positives = 110/263 (41%)
Query: 269 FQDTQMMELLRPSLEEAFFIQNQ--QYIGKRGATVGVTREKMIKYAK--EILQKEMLP-H 323
F + ++LR +EE Q Q Y+G+R V ++ A+ E L + + H
Sbjct: 277 FFKNSVSQMLRIVMEEGCHTQKQVLDYLGER-FRVKLSLPDWYPNAEAAEFLFNQCICIH 335
Query: 324 VGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRT---- 379
+ + T K Y + +L A G ED+ D N+ + G L +
Sbjct: 336 LKSN----TDKFYLLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLFLMFLKEKMEN 391
Query: 380 --LFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTR-- 435
L K+ D R+ N +++ F++ + +T +Y LATGN G
Sbjct: 392 WLLSIKIALDKRAQKTNVSINNENLMKIFSMGTE-LTRPFEYLLATGNLRSKTGLGFMQD 450
Query: 436 AG---VSQVLNCLTYASTFTY------YLSWKLAKPRQLHNSQWGMMCPAETPEGQACGL 486
+G V+ LN + Y S F + + R+L WG +CP TP+G CGL
Sbjct: 451 SGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRKLLPESWGFLCPVHTPDGAPCGL 510
Query: 487 VKNL-ALMVYIT--IGSAAYPIL 506
+ +L A+ +T + +A+ P L
Sbjct: 511 LNHLTAVCEVVTKFVYTASIPAL 533
Score = 110 (43.8 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 31/76 (40%), Positives = 40/76 (52%)
Query: 102 RLRNLTYSAPLYVDVTKRV--IKKGHDGE---EVPIMLRSSYCTLYQNSQKALTELGECP 156
R R TY L D++ V + KG + VPIM++S C LY + L E E
Sbjct: 104 RGRRSTYRGKLTADISWAVNGVPKGIIKQFLGXVPIMVKSKLCNLYNLPPQVLIEHHEEA 163
Query: 157 YDEGGYFIINGSEKVL 172
+ GGYFIING EKV+
Sbjct: 164 EEMGGYFIINGIEKVI 179
>UNIPROTKB|O54888 [details] [associations]
symbol:Polr1b "DNA-directed RNA polymerase I subunit RPA2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 122 (48.0 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 66/263 (25%), Positives = 110/263 (41%)
Query: 269 FQDTQMMELLRPSLEEAFFIQNQ--QYIGKRGATVGVTREKMIKYAK--EILQKEMLP-H 323
F + ++LR +EE Q Q Y+G+R V ++ A+ E L + + H
Sbjct: 277 FFKNSVSQMLRIVMEEGCHTQKQVLDYLGER-FRVKLSLPDWYPNAEAAEFLFNQCICIH 335
Query: 324 VGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRT---- 379
+ + T K Y + +L A G ED+ D N+ + G L +
Sbjct: 336 LKSN----TDKFYLLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLFLMFLKEKMEN 391
Query: 380 --LFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTR-- 435
L K+ D R+ N +++ F++ + +T +Y LATGN G
Sbjct: 392 WLLSIKIALDKRAQKTNVSINNENLMKIFSMGTE-LTRPFEYLLATGNLRSKTGLGFMQD 450
Query: 436 AG---VSQVLNCLTYASTFTY------YLSWKLAKPRQLHNSQWGMMCPAETPEGQACGL 486
+G V+ LN + Y S F + + R+L WG +CP TP+G CGL
Sbjct: 451 SGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRKLLPESWGFLCPVHTPDGAPCGL 510
Query: 487 VKNL-ALMVYIT--IGSAAYPIL 506
+ +L A+ +T + +A+ P L
Sbjct: 511 LNHLTAVCEVVTKFVYTASIPAL 533
Score = 110 (43.8 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 31/76 (40%), Positives = 40/76 (52%)
Query: 102 RLRNLTYSAPLYVDVTKRV--IKKGHDGE---EVPIMLRSSYCTLYQNSQKALTELGECP 156
R R TY L D++ V + KG + VPIM++S C LY + L E E
Sbjct: 104 RGRRSTYRGKLTADISWAVNGVPKGIIKQFLGXVPIMVKSKLCNLYNLPPQVLIEHHEEA 163
Query: 157 YDEGGYFIINGSEKVL 172
+ GGYFIING EKV+
Sbjct: 164 EEMGGYFIINGIEKVI 179
>DICTYBASE|DDB_G0293560 [details] [associations]
symbol:rpa2 "RNA polymerase I, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 dictyBase:DDB_G0293560
PANTHER:PTHR20856 GenomeReviews:CM000155_GR GO:GO:0046872
GO:GO:0003677 EMBL:AAFI02000218 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 RefSeq:XP_629008.1 HSSP:P08518 STRING:Q54BM1
PRIDE:Q54BM1 EnsemblProtists:DDB0216278 GeneID:8629292
KEGG:ddi:DDB_G0293560 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
ProtClustDB:CLSZ2728683 GO:GO:0032549 Gene3D:2.40.270.10
Uniprot:Q54BM1
Length = 1130
Score = 149 (57.5 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 85/345 (24%), Positives = 148/345 (42%)
Query: 130 VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNH-VYVFKK 188
+PIM++S YC L S + L E E ++GGYFI+NG+EKV+ NH V + +K
Sbjct: 121 LPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVALHRK 180
Query: 189 RQPNKY-AYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
N+ Y ++ RP + L + G ++ ++++ + +P
Sbjct: 181 AWTNRGPGYTKNGITIRCV--RPDRSSITNNLHYIN-DGQTTLRFLYRRQEFF---LPAT 234
Query: 248 ILFRALGFTADEDILEHICY-DFQDTQMMELLRPSLEEAFF--IQNQQ----YIGKR--G 298
+L +AL T +++I E+I D ++T + + + SL E I Q+ YIG R
Sbjct: 235 LLLKALKDTTEKEIYENIVQGDNENTFLTDRVELSLREQKINNINTQEEVLDYIGSRFRA 294
Query: 299 ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDR 358
T IK + + + + H+ + K +I +L G+ D+
Sbjct: 295 RTQFPPSFSNIKIGRWFINQFVFVHLPNYN----DKYNLLILMIQKLYAMVGGKCGTDNI 350
Query: 359 DHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN--LQFAIKA---KT- 412
D + + LAG + G + + + +S+V K ++ K L A+K K
Sbjct: 351 DSPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGDKLPDALKKVLDKNF 410
Query: 413 -ITGGLKYSLATGNWGQGNAAGTR--AG---VSQVLNCLTYASTF 451
I Y LATGN + + +G ++ LN L + S F
Sbjct: 411 KIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISHF 455
Score = 115 (45.5 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 30/106 (28%), Positives = 49/106 (46%)
Query: 413 ITGGLKYSLATGNWGQGNAAGTR--AG---VSQVLNCLTYASTF------TYYLSWKLAK 461
I Y LATGN + + +G ++ LN L + S F ++ + K
Sbjct: 412 IADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISHFRSIHRGAFFATMKTTA 471
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILE 507
R+L WG CP TP+G CGL+ +L+ +T+ +A P ++
Sbjct: 472 IRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPTVQ 517
Score = 76 (31.8 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 30 EEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS-DFAEIYLSKPMMTE 88
E K L++ +DSFD F + + ++ +S + +HN Q F ++ LS+P
Sbjct: 4 ELKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYF----EHNSTQYKIRFTDLKLSRPTRNI 59
Query: 89 SDGETATLFLKAARLRNLTYSAP 111
+ E L+ +R TY+AP
Sbjct: 60 VEKEIK-LYPNESRETGTTYNAP 81
>TIGR_CMR|BA_0102 [details] [associations]
symbol:BA_0102 "DNA-directed RNA polymerase, beta subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 RefSeq:NP_842670.1
RefSeq:YP_026388.1 RefSeq:YP_052605.1 ProteinModelPortal:Q81VT8
IntAct:Q81VT8 PRIDE:Q81VT8 DNASU:1086075
EnsemblBacteria:EBBACT00000010978 EnsemblBacteria:EBBACT00000018107
EnsemblBacteria:EBBACT00000023445 GeneID:1086075 GeneID:2820986
GeneID:2850888 KEGG:ban:BA_0102 KEGG:bar:GBAA_0102 KEGG:bat:BAS0102
HOGENOM:HOG000218611 OMA:FMTWEGY BioCyc:BANT260799:GJAJ-113-MONOMER
BioCyc:BANT261594:GJ7F-115-MONOMER Uniprot:Q81VT8
Length = 1177
Score = 127 (49.8 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 56/230 (24%), Positives = 96/230 (41%)
Query: 271 DTQMMELLRPSLEEAFFIQNQQYIGKRGATVGVTREKMIK-YAKEILQKEMLPHVGTGDF 329
D + ++ + P LE+ + + +G G G + IK YA E + ++ +G +
Sbjct: 311 DRRTLDRILPYLEKNIGFKTAKPMG--GVVEGDVELQSIKIYAPESEGERVINVIGNANI 368
Query: 330 CETKKAYYFGHIIHRL-----LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKL 384
K G I+ + LL +G DD DH GN+RL G LL FR ++
Sbjct: 369 TRDVKHITPGDILASISYFFNLLYKVGDT--DDIDHLGNRRLRSVGELLQNQFRIGLSRM 426
Query: 385 TGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQG-NAAGTRAGVSQV-- 441
VR + + + + Q I + + +K + Q + A ++
Sbjct: 427 ERVVRERMS--IQDTNAITPQALINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELTHKRR 484
Query: 442 LNCLTYASTFTYYLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 491
L+ L +++ R +H S +G MCP ETPEG GL+ +L+
Sbjct: 485 LSALGPGGLTRERAGFEV---RDVHYSHYGRMCPIETPEGPNIGLINSLS 531
Score = 91 (37.1 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 33/113 (29%), Positives = 55/113 (48%)
Query: 152 LGECPY-DEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRP 210
+G+ P E G F+ING+E+V+++Q S + Y K + K + A V NR
Sbjct: 113 MGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYSGKVDKNGKRGFTATVIP-----NRG 167
Query: 211 PSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILE 263
+ T AK ++ + R ++P+ +L RALGF +D++I E
Sbjct: 168 AWLEY-----ETDAK-----DVVYVRIDRTR-KLPVTVLLRALGFGSDQEITE 209
Score = 51 (23.0 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 27/108 (25%), Positives = 46/108 (42%)
Query: 21 AWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIY 80
++A IS E L+ Q S+ F ++E+ + + IE +F +
Sbjct: 16 SYARISEVLELPNLIEIQTSSYQWFLDEGLREMFQDISPIE-----DFTGNLSLEFIDYS 70
Query: 81 LSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE 128
L +P + + + R++TY+APL V V R+I K GE
Sbjct: 71 LGEPKYSVDE----------CKERDVTYAAPLRVKV--RLINK-ETGE 105
>UNIPROTKB|Q9H9Y6 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase I subunit RPA2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0009303 "rRNA transcription"
evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
[GO:0017126 "nucleologenesis" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0006361 "transcription initiation from RNA
polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
elongation from RNA polymerase I promoter" evidence=TAS]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
EMBL:AC012442 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 EMBL:AK022533 EMBL:AK022890
EMBL:AK128044 IPI:IPI00026445 IPI:IPI01010348 RefSeq:NP_001131076.1
RefSeq:NP_061887.2 UniGene:Hs.741552 ProteinModelPortal:Q9H9Y6
SMR:Q9H9Y6 DIP:DIP-27538N IntAct:Q9H9Y6 MINT:MINT-4727878
STRING:Q9H9Y6 PhosphoSite:Q9H9Y6 DMDM:92090637 SWISS-2DPAGE:Q9H9Y6
PaxDb:Q9H9Y6 PRIDE:Q9H9Y6 Ensembl:ENST00000263331
Ensembl:ENST00000417433 GeneID:84172 KEGG:hsa:84172 UCSC:uc002thw.2
UCSC:uc010fkn.2 CTD:84172 GeneCards:GC02P113299 H-InvDB:HIX0002380
HGNC:HGNC:20454 HPA:HPA037528 MIM:602000 neXtProt:NX_Q9H9Y6
PharmGKB:PA130601182 HOVERGEN:HBG017742 InParanoid:Q9H9Y6
OrthoDB:EOG4H9XJP PhylomeDB:Q9H9Y6 GenomeRNAi:84172 NextBio:73536
ArrayExpress:Q9H9Y6 Bgee:Q9H9Y6 CleanEx:HS_POLR1B
Genevestigator:Q9H9Y6 GermOnline:ENSG00000125630 GO:GO:0017126
Gene3D:2.40.50.150 Uniprot:Q9H9Y6
Length = 1135
Score = 117 (46.2 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 65/261 (24%), Positives = 107/261 (40%)
Query: 269 FQDTQMMELLRPSLEEAFFIQNQ--QYIGKR-GATVGVTREKMIKYAKEILQKEMLP-HV 324
F + ++LR +EE Q Q Y+G+ + V + A E L + + H+
Sbjct: 277 FLRNSVSQMLRIVMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHL 336
Query: 325 GTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL-LGGLFRTLFRK 383
+ T+K Y + +L A G ED+ D N+ + G L L L L
Sbjct: 337 KSN----TEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGW 392
Query: 384 LTGDVRSYVQKCVDNGKDVNLQFAIKAKT----ITGGLKYSLATGNWGQGNAAGTR--AG 437
L ++ +K +N ++ T +T +Y ATGN G +G
Sbjct: 393 LVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSG 452
Query: 438 ---VSQVLNCLTYASTFTY------YLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 488
V+ LN + Y S F + + R+L WG +CP TP+G+ CGL+
Sbjct: 453 LCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMN 512
Query: 489 NL-ALMVYIT--IGSAAYPIL 506
+L A+ +T + +A+ P L
Sbjct: 513 HLTAVCEVVTQFVYTASIPAL 533
Score = 108 (43.1 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 33/84 (39%), Positives = 42/84 (50%)
Query: 94 ATLFLKAARLRNLTYSAPLYVDVTKRV--IKKGHDGE---EVPIMLRSSYCTLYQNSQKA 148
A ++ R R TY L D+ V I KG + VPIM++S C L +A
Sbjct: 96 ANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFLGYVPIMVKSKLCNLRNLPPQA 155
Query: 149 LTELGECPYDEGGYFIINGSEKVL 172
L E E + GGYFIING EKV+
Sbjct: 156 LIEHHEEAEEMGGYFIINGIEKVI 179
>GENEDB_PFALCIPARUM|PF11_0358 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase,
beta subunit, putative" species:5833 "Plasmodium falciparum"
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=ISS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04563
Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:AE014186 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 RefSeq:XP_001348029.1
ProteinModelPortal:Q8II17 EnsemblProtists:PF11_0358:mRNA
GeneID:810905 KEGG:pfa:PF11_0358 EuPathDB:PlasmoDB:PF3D7_1134700
HOGENOM:HOG000282443 OMA:ENINIDM ProtClustDB:CLSZ2433354
Uniprot:Q8II17
Length = 1517
Score = 116 (45.9 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 39/159 (24%), Positives = 70/159 (44%)
Query: 32 KGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH--------NPGQQSDF--AEIYL 81
K LV+ +D F+ F ++ I + +E P+ + N + F ++I +
Sbjct: 69 KFLVQSHIDDFNSFINVYIKNIAENIPIMEFSPQQNNYSLLNMNKNNSESVKFFVSDIQI 128
Query: 82 SKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR--------VIKKGHDGEEVPIM 133
PM+ GE + +L TY L + + ++ I GH +PIM
Sbjct: 129 KNPMIKNDKGEYRADYPYLCKLSARTYEGELLIKINRQYKDEIASTTICAGH----IPIM 184
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVL 172
+ S+ C L ++K L + GE GG+F+++G KV+
Sbjct: 185 IMSNLCNLSNLNKKELAQKGEDQSLLGGFFVVSGRLKVI 223
Score = 114 (45.2 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 38/150 (25%), Positives = 65/150 (43%)
Query: 355 EDDRDHYGNKRLDLAGPLLGG---LFRTL---FRKLTGDVRSYVQKCVD-NGKDVNLQFA 407
+D+ D+ + L + LFR++ F++L D +++ C + + F
Sbjct: 496 QDNNDYKNESKKKLKSIFINEKEKLFRSVDNYFKELYNDNYMFLENCKSFSNTSSAILFF 555
Query: 408 IKAKTITG-GLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKPRQLH 466
K I+ L Y +G W AA + + N T++ K+ PR+L
Sbjct: 556 FKTGNISSENLHYQQKSG-WVI--AADEINNLRLITN-FRAIHRGTFFQDVKVLTPRKLL 611
Query: 467 NSQWGMMCPAETPEGQACGLVKNLALMVYI 496
WG +CP TP+G CGL+ +LA +I
Sbjct: 612 GESWGFICPVHTPDGTPCGLLNHLAQYCHI 641
Score = 43 (20.2 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 283 EEAFFIQNQQYIGKRG-ATVGVTREKMIKY---AKEILQKEMLPHV-GTGDFCETKKAYY 337
+E F N Y+G+ G+ + + Y AK+IL+ +LPH+ + ET +
Sbjct: 330 KELFEKYNLSYLGRIAYLRRGIFKYNLNCYEKKAKDILKYCILPHIKNNSEKFETM-CFM 388
Query: 338 FGHIIH 343
F +I+
Sbjct: 389 FKKLIY 394
>UNIPROTKB|Q8II17 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014186 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
RefSeq:XP_001348029.1 ProteinModelPortal:Q8II17
EnsemblProtists:PF11_0358:mRNA GeneID:810905 KEGG:pfa:PF11_0358
EuPathDB:PlasmoDB:PF3D7_1134700 HOGENOM:HOG000282443 OMA:ENINIDM
ProtClustDB:CLSZ2433354 Uniprot:Q8II17
Length = 1517
Score = 116 (45.9 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 39/159 (24%), Positives = 70/159 (44%)
Query: 32 KGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH--------NPGQQSDF--AEIYL 81
K LV+ +D F+ F ++ I + +E P+ + N + F ++I +
Sbjct: 69 KFLVQSHIDDFNSFINVYIKNIAENIPIMEFSPQQNNYSLLNMNKNNSESVKFFVSDIQI 128
Query: 82 SKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR--------VIKKGHDGEEVPIM 133
PM+ GE + +L TY L + + ++ I GH +PIM
Sbjct: 129 KNPMIKNDKGEYRADYPYLCKLSARTYEGELLIKINRQYKDEIASTTICAGH----IPIM 184
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVL 172
+ S+ C L ++K L + GE GG+F+++G KV+
Sbjct: 185 IMSNLCNLSNLNKKELAQKGEDQSLLGGFFVVSGRLKVI 223
Score = 114 (45.2 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 38/150 (25%), Positives = 65/150 (43%)
Query: 355 EDDRDHYGNKRLDLAGPLLGG---LFRTL---FRKLTGDVRSYVQKCVD-NGKDVNLQFA 407
+D+ D+ + L + LFR++ F++L D +++ C + + F
Sbjct: 496 QDNNDYKNESKKKLKSIFINEKEKLFRSVDNYFKELYNDNYMFLENCKSFSNTSSAILFF 555
Query: 408 IKAKTITG-GLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKPRQLH 466
K I+ L Y +G W AA + + N T++ K+ PR+L
Sbjct: 556 FKTGNISSENLHYQQKSG-WVI--AADEINNLRLITN-FRAIHRGTFFQDVKVLTPRKLL 611
Query: 467 NSQWGMMCPAETPEGQACGLVKNLALMVYI 496
WG +CP TP+G CGL+ +LA +I
Sbjct: 612 GESWGFICPVHTPDGTPCGLLNHLAQYCHI 641
Score = 43 (20.2 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 283 EEAFFIQNQQYIGKRG-ATVGVTREKMIKY---AKEILQKEMLPHV-GTGDFCETKKAYY 337
+E F N Y+G+ G+ + + Y AK+IL+ +LPH+ + ET +
Sbjct: 330 KELFEKYNLSYLGRIAYLRRGIFKYNLNCYEKKAKDILKYCILPHIKNNSEKFETM-CFM 388
Query: 338 FGHIIH 343
F +I+
Sbjct: 389 FKKLIY 394
>UNIPROTKB|F5GZX4 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0005730 GO:GO:0003677
GO:GO:0006351 EMBL:AC012442 GO:GO:0003899 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00418797 Ensembl:ENST00000541869 ArrayExpress:F5GZX4
Bgee:F5GZX4 Uniprot:F5GZX4
Length = 1173
Score = 117 (46.2 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 65/261 (24%), Positives = 107/261 (40%)
Query: 269 FQDTQMMELLRPSLEEAFFIQNQ--QYIGKR-GATVGVTREKMIKYAKEILQKEMLP-HV 324
F + ++LR +EE Q Q Y+G+ + V + A E L + + H+
Sbjct: 315 FLRNSVSQMLRIVMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHL 374
Query: 325 GTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL-LGGLFRTLFRK 383
+ T+K Y + +L A G ED+ D N+ + G L L L L
Sbjct: 375 KSN----TEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGW 430
Query: 384 LTGDVRSYVQKCVDNGKDVNLQFAIKAKT----ITGGLKYSLATGNWGQGNAAGTR--AG 437
L ++ +K +N ++ T +T +Y ATGN G +G
Sbjct: 431 LVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSG 490
Query: 438 ---VSQVLNCLTYASTFTY------YLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 488
V+ LN + Y S F + + R+L WG +CP TP+G+ CGL+
Sbjct: 491 LCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMN 550
Query: 489 NL-ALMVYIT--IGSAAYPIL 506
+L A+ +T + +A+ P L
Sbjct: 551 HLTAVCEVVTQFVYTASIPAL 571
Score = 108 (43.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 33/84 (39%), Positives = 42/84 (50%)
Query: 94 ATLFLKAARLRNLTYSAPLYVDVTKRV--IKKGHDGE---EVPIMLRSSYCTLYQNSQKA 148
A ++ R R TY L D+ V I KG + VPIM++S C L +A
Sbjct: 134 ANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFLGYVPIMVKSKLCNLRNLPPQA 193
Query: 149 LTELGECPYDEGGYFIINGSEKVL 172
L E E + GGYFIING EKV+
Sbjct: 194 LIEHHEEAEEMGGYFIINGIEKVI 217
>MGI|MGI:108014 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IMP]
[GO:0009303 "rRNA transcription" evidence=ISO;IMP] [GO:0009790
"embryo development" evidence=IMP] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0017126 "nucleologenesis" evidence=IMP]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] Reactome:REACT_78136
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 MGI:MGI:108014 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
EMBL:CH466519 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
GO:GO:0005736 GO:GO:0003899 CleanEx:MM_RPA2 Reactome:REACT_86751
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 EMBL:U58280 EMBL:AK143501 EMBL:AK144616
EMBL:AL833780 EMBL:BX000699 IPI:IPI00112769 PIR:T42723
RefSeq:NP_033112.2 UniGene:Mm.259078 ProteinModelPortal:P70700
STRING:P70700 PhosphoSite:P70700 PaxDb:P70700 PRIDE:P70700
Ensembl:ENSMUST00000103205 GeneID:20017 KEGG:mmu:20017
HOGENOM:HOG000222963 InParanoid:Q3UMX7 NextBio:297521 Bgee:P70700
Genevestigator:P70700 GermOnline:ENSMUSG00000027395 Uniprot:P70700
Length = 1135
Score = 115 (45.5 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 50/195 (25%), Positives = 81/195 (41%)
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFR------KLT 385
T K Y + +L A G +D+ D N+ + G L + K+
Sbjct: 340 TDKFYLLCLMTRKLFALARGECMDDNPDSLVNQEVLSPGQLFLMFLKEKMENWLVSIKIV 399
Query: 386 GDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG--TRAG---VSQ 440
D R+ N +++ F++ + +T +Y LATGN G +G V+
Sbjct: 400 LDKRAQKANVSINNENLMKIFSMGTE-LTRPFEYLLATGNLRSKTGLGFLQDSGLCVVAD 458
Query: 441 VLNCLTYASTF------TYYLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL-ALM 493
LN L Y S F + + R+L WG +CP TP+G CGL+ +L A+
Sbjct: 459 KLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVC 518
Query: 494 VYIT--IGSAAYPIL 506
+T + +A+ P L
Sbjct: 519 EVVTKFVYTASIPAL 533
Score = 109 (43.4 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 31/76 (40%), Positives = 40/76 (52%)
Query: 102 RLRNLTYSAPLYVDVTKRV--IKKGHDGE---EVPIMLRSSYCTLYQNSQKALTELGECP 156
R R TY L D++ V + KG + VPIM++S C LY + L E E
Sbjct: 104 RGRKSTYRGRLTADISWAVNGVPKGIIKQFLGYVPIMVKSKLCNLYNLPPRVLIEHHEEA 163
Query: 157 YDEGGYFIINGSEKVL 172
+ GGYFIING EKV+
Sbjct: 164 EEMGGYFIINGIEKVI 179
>TIGR_CMR|CHY_2318 [details] [associations]
symbol:CHY_2318 "DNA-directed RNA polymerase, beta
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 HOGENOM:HOG000218611
OMA:FMTWEGY RefSeq:YP_361127.1 ProteinModelPortal:Q3A9Q7
STRING:Q3A9Q7 PRIDE:Q3A9Q7 GeneID:3728817 KEGG:chy:CHY_2318
PATRIC:21277705 BioCyc:CHYD246194:GJCN-2317-MONOMER Uniprot:Q3A9Q7
Length = 1132
Score = 130 (50.8 bits), Expect = 4.1e-09, Sum P(3) = 4.1e-09
Identities = 43/153 (28%), Positives = 68/153 (44%)
Query: 340 HIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNG 399
+ I LL G+ DD DH GN+RL G LL FR ++ VR + + +
Sbjct: 318 YTIRYLLGLMRGQGKVDDIDHLGNRRLRSVGELLQNQFRIGLARMERVVRE--RMTIQDA 375
Query: 400 KDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKL 459
+ Q I + I +K + Q ++++ + ++ LS +
Sbjct: 376 DSLTPQVLINTRPIVAAIKEFFGSSQLSQ--FMDQTNPLAELTHKRRLSALGPGGLSRER 433
Query: 460 A--KPRQLHNSQWGMMCPAETPEGQACGLVKNL 490
A + R +H+S +G MCP ETPEG GL+ NL
Sbjct: 434 AGFEVRDVHHSHYGRMCPIETPEGPNIGLIGNL 466
Score = 77 (32.2 bits), Expect = 4.1e-09, Sum P(3) = 4.1e-09
Identities = 35/119 (29%), Positives = 55/119 (46%)
Query: 152 LGECPY-DEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN-KYAYVAEVCSMAESQNR 209
LG+ P E G FI NG+E+V+I+Q S VY ++ PN K Y+A + NR
Sbjct: 110 LGDFPLMTEKGTFIFNGAERVVISQMVRSPG-VYFSEQVDPNGKKMYLATIIP-----NR 163
Query: 210 PPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYD 268
F T +I+ + R ++P+ +L +ALG+ + I E +D
Sbjct: 164 GAWLEF-----ETDVN-----DHIYVRIDRTR-KLPVTVLLKALGYESKGRIAELFDHD 211
Score = 58 (25.5 bits), Expect = 4.1e-09, Sum P(3) = 4.1e-09
Identities = 25/88 (28%), Positives = 40/88 (45%)
Query: 44 EFNQNTMQEIVDESA-DI--EIRPESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKA 100
E + + Q +DE ++ EI P + +F + YL KP + ++
Sbjct: 28 EIQKKSYQWFLDEGLREVFREISPITDFTGNLSLEFLDYYLGKPKYS----------VEE 77
Query: 101 ARLRNLTYSAPLYVDVTKRVIKKGHDGE 128
+ R+ TYSAPL V V R++ K GE
Sbjct: 78 CKERDFTYSAPLRVKV--RLLNK-ETGE 102
Score = 43 (20.2 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 25/107 (23%), Positives = 44/107 (41%)
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFT--ADEDILEHICYDFQDTQMMELLRPSLEE 284
G +Y +A P I E+P +I + + DE + E F++ + +L
Sbjct: 7 GKKIRYSYAKFPEI-LELPYLIEIQKKSYQWFLDEGLREV----FREISPITDFTGNLSL 61
Query: 285 AFFIQNQQYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
F Y+GK +V +E+ Y+ + K L + TG+ E
Sbjct: 62 EFL---DYYLGKPKYSVEECKERDFTYSAPLRVKVRLLNKETGEIKE 105
>TAIR|locus:2019272 [details] [associations]
symbol:NRPA2 "nuclear RNA polymerase A2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002684 GO:GO:0005829 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 IPI:IPI00518589 RefSeq:NP_564341.2
UniGene:At.16301 ProteinModelPortal:F4I366 SMR:F4I366 PRIDE:F4I366
EnsemblPlants:AT1G29940.1 GeneID:839872 KEGG:ath:AT1G29940
Uniprot:F4I366
Length = 1178
Score = 133 (51.9 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 79/331 (23%), Positives = 145/331 (43%)
Query: 29 FEE-KGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMM- 86
F+E LV ++SFD + + + I+P S ++P +++ + I+L P++
Sbjct: 16 FKELHNLVTHHIESFDYMTLKGLDVMFNR-----IKPVSVYDPNTENELS-IWLENPLVF 69
Query: 87 ---TESDGETAT---LFLKAARLRNLTYSAPLYVDVTKR-----VIKKGHDGEEVPIMLR 135
ES T+ L R ++Y+ DV + V++ D + PIML
Sbjct: 70 APQKESFKSTSRKEPLLPFECRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPIMLM 129
Query: 136 SSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHV--YVFKKRQPNK 193
S C+L + L + E + GGYFI+NG E+V NH + + K
Sbjct: 130 SKLCSLKGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRK 189
Query: 194 YAYVAE-VCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRA 252
Y ++ V + ++ T+ + L SA+ G +I Y+ +P+ ++ +A
Sbjct: 190 EGYSSKAVVTRCVRDDQSSVTVKLYYLRNGSARVGF---WIVGR-EYL---LPVGLVLKA 242
Query: 253 LGFTADEDILEHI--CYDFQ----D----TQMM-ELLRPSLEEA----FFIQNQ--QYIG 295
L + DE+I E + CY D TQ++ E + L+E F + Q +++G
Sbjct: 243 LTNSCDEEIYESLNCCYSEHYGRGDGAIGTQLVRERAKIILDEVRDLGLFTREQCRKHLG 302
Query: 296 KRGATV--GVTREKMIKYAKEILQKEMLPHV 324
+ V GV +E + A+ +L+ + H+
Sbjct: 303 QHFQPVLDGVKKESLSIVAEAVLRDYLFVHL 333
Score = 85 (35.0 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 30/112 (26%), Positives = 49/112 (43%)
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF 451
V+K ++ ++ +I+ TG LK +G Q A T ++ LN L + S F
Sbjct: 416 VKKLINKNPPRSIGTSIETLLKTGALKTQ--SGLDLQQRAGYTVQ--AERLNFLRFLSFF 471
Query: 452 ------TYYLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 497
+ + R+L WG +CP TP+G CGL+ ++ IT
Sbjct: 472 RAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGTPCGLLNHMTRTSRIT 523
>UNIPROTKB|C9JMN3 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase II subunit RPB2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] InterPro:IPR007644
InterPro:IPR015712 Pfam:PF04563 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 EMBL:AC069307 GO:GO:0032549
HGNC:HGNC:9188 IPI:IPI00894248 ProteinModelPortal:C9JMN3 SMR:C9JMN3
STRING:C9JMN3 Ensembl:ENST00000450656 ArrayExpress:C9JMN3
Bgee:C9JMN3 Uniprot:C9JMN3
Length = 64
Score = 134 (52.2 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 25/36 (69%), Positives = 32/36 (88%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDES 57
W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDA 62
>TIGR_CMR|ECH_0952 [details] [associations]
symbol:ECH_0952 "DNA-directed RNA polymerase, beta
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
EMBL:AF389473 RefSeq:YP_507740.1 ProteinModelPortal:Q8KWX2
STRING:Q8KWX2 PRIDE:Q8KWX2 GeneID:3927386 KEGG:ech:ECH_0952
PATRIC:20577286 BioCyc:ECHA205920:GJNR-955-MONOMER Uniprot:Q8KWX2
Length = 1380
Score = 134 (52.2 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 43/160 (26%), Positives = 73/160 (45%)
Query: 340 HIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC-VDN 398
H+I +L+L G + DD DH GN+R+ G + FR +L + Y+ DN
Sbjct: 451 HVIKKLVLLRDGEGSVDDIDHLGNRRVRSVGEFIENQFRIGILRLERMIMDYMSSVNFDN 510
Query: 399 GKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWK 458
+ + K + LK ++ Q +S+V + ++ L+ +
Sbjct: 511 AMPCDF---VNPKVLATVLKDFFSSSQLSQ--FMDQTNPLSEVTHKRRLSALGPGGLTRE 565
Query: 459 LA--KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 496
A + R +H + +G +CP ETPEGQ GL+ +LA+ I
Sbjct: 566 RAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLAIYARI 605
Score = 61 (26.5 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 104 RNLTYSAPLYVDVTKRVIKKGHDG--EEVPIML---RSSYCTLYQNSQKALTELGECP-Y 157
R +T+S P+ + V + ++ K + +EV ++ S Y Q+ +G+ P
Sbjct: 97 RGITFSVPIRI-VLRFIVWKVQEVSFKEVKYVVDEETSEKSIKYIKEQEV--SIGDLPTM 153
Query: 158 DEGGYFIINGSEKVLIAQ 175
G FIING E+V+++Q
Sbjct: 154 TSHGTFIINGIERVIVSQ 171
Score = 48 (22.0 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 241 RTEIPIIILFRALGFTADEDILEHICYD 268
+ ++P+ +L RALG + + DIL+ YD
Sbjct: 224 KRKLPVSLLLRALGLS-NNDILDTF-YD 249
Score = 38 (18.4 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 304 TREKMIKYAKE 314
T EK IKY KE
Sbjct: 132 TSEKSIKYIKE 142
>TIGR_CMR|APH_1024 [details] [associations]
symbol:APH_1024 "DNA-directed RNA polymerase, beta
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 RefSeq:YP_505583.1 ProteinModelPortal:Q2GJ68
STRING:Q2GJ68 PRIDE:Q2GJ68 GeneID:3930425 KEGG:aph:APH_1024
PATRIC:20950798 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
BioCyc:APHA212042:GHPM-1031-MONOMER Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 Uniprot:Q2GJ68
Length = 1383
Score = 137 (53.3 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 49/183 (26%), Positives = 82/183 (44%)
Query: 340 HIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC-VDN 398
H+I +L+L G DD DH GN+R+ G + FR +L + Y+ DN
Sbjct: 452 HVIKKLVLLPDGEGVVDDIDHLGNRRVRSVGEFIENQFRVGILRLERMIMDYMSSVNFDN 511
Query: 399 GKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWK 458
V F + K + LK ++ Q +S+V + ++ L+ +
Sbjct: 512 A--VPCDF-VNPKILATVLKDFFSSSQLSQ--FMDQTNPLSEVTHKRRLSALGPGGLTRE 566
Query: 459 LA--KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT-IGSAAYPILEFLEEWGTE 515
A + R +H + +G +CP ETPEGQ GL+ +LA+ I G P + ++ T+
Sbjct: 567 RAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLAIYAKINKYGFIESPYRKVIDGVVTD 626
Query: 516 NFE 518
+ E
Sbjct: 627 SVE 629
Score = 60 (26.2 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 104 RNLTYSAPLYVDVTKRVIKKGHDG--EEVPIMLRSSYCTLYQNSQKALTE----LGECPY 157
R +T+S P+ + + + V+ K + +EV ++ TL + S K + E +G+ P
Sbjct: 98 RGITFSVPMRITL-RFVVWKVQEVSFKEVKYVVDEG--TL-ERSVKYMKEQEVSIGDLPM 153
Query: 158 DEG-GYFIINGSEKVLIAQ 175
G FIING E+V+++Q
Sbjct: 154 MTSYGTFIINGIERVIVSQ 172
Score = 43 (20.2 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 241 RTEIPIIILFRALGFTADEDILEHICYD 268
+ ++P+ L +ALG + + DIL+ YD
Sbjct: 225 KRKLPVTYLLKALGMS-NNDILDTF-YD 250
>UNIPROTKB|F8VRS3 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] InterPro:IPR015712 PANTHER:PTHR20856 GO:GO:0006351
GO:GO:0003899 EMBL:AC009721 GO:GO:0032549 EMBL:AC078992
EMBL:AC080012 HGNC:HGNC:30348 IPI:IPI01021275
ProteinModelPortal:F8VRS3 SMR:F8VRS3 Ensembl:ENST00000549195
ArrayExpress:F8VRS3 Bgee:F8VRS3 Uniprot:F8VRS3
Length = 54
Score = 118 (46.6 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 341 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVR 389
++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K +++
Sbjct: 1 MVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMK 48
>FB|FBgn0003278 [details] [associations]
symbol:RpI135 "RNA polymerase I 135kD subunit" species:7227
"Drosophila melanogaster" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005730 EMBL:AE014134 GO:GO:0022008
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 EMBL:X17298 EMBL:AY075569 PIR:JQ0354
RefSeq:NP_476708.1 UniGene:Dm.30753 ProteinModelPortal:P20028
STRING:P20028 PaxDb:P20028 EnsemblMetazoa:FBtr0078054 GeneID:33210
KEGG:dme:Dmel_CG4033 CTD:33210 FlyBase:FBgn0003278
GeneTree:ENSGT00550000074993 InParanoid:P20028 OrthoDB:EOG4ZKH24
PhylomeDB:P20028 GenomeRNAi:33210 NextBio:782449 Bgee:P20028
GermOnline:CG4033 Uniprot:P20028
Length = 1129
Score = 143 (55.4 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 102/448 (22%), Positives = 188/448 (41%)
Query: 39 LDSFDEFNQNTMQEIVDESADIEIRPESQHNP-GQQSDFA--EIYLSKPMMTES--DGET 93
+DSFDE + +D SA I P +P G++ I+++KP + + D T
Sbjct: 40 VDSFDEM----LTVGLDNSAKHMI-PNHWLSPAGEKISMKVESIWIAKPKVPQDVIDVRT 94
Query: 94 ATLFLKAARLRNLTYSAPLYVDVTKRV--IKK---GHDGEEVPIMLRSSYCTLYQNSQKA 148
++ +R +++YS V + V ++K D EVPIMLRS C L Q + +
Sbjct: 95 REIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLGEVPIMLRSKACNLGQATPEE 154
Query: 149 LTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ-PNKYAYVAEVCSMAESQ 207
+ + GE + GG F+I G+EK++ NH K+ ++ +++ + ++
Sbjct: 155 MVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTV 214
Query: 208 NRPPSTI--FVPMLSRTSAKGGSSGQYIHAT-LPYIRTEIPIIILFRALGFTADEDILEH 264
S++ V L+ +AK + H L Y+ P+ ++ + L DE+I
Sbjct: 215 REDESSLSNVVHYLNNGTAKF----MFSHVKRLSYV----PVCLILKCLMDYTDEEIYNR 266
Query: 265 ICYDFQDTQ-----MMELLRPSLEEAFFIQNQ--QYIGK--RGATVGVTREKMIKYAKE- 314
+ ++ Q + +LR E + Q +IG R V + +
Sbjct: 267 LVQGYESDQYYVSCVQAMLREVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDDDVTDF 326
Query: 315 ILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG 374
IL++ ++ H+ T + K +I +L CA G+ ++ D + + L G L
Sbjct: 327 ILRERVMIHLDTYE----DKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQ 382
Query: 375 GLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTI--TGG----LKYSLATGNWGQ 428
VR +QK + + D + A+ + + GG ++ LATGN
Sbjct: 383 KYLSERVESWVSQVRRCLQKKLTS-PDALVTSAVMTQCMRQAGGVGRAIESFLATGNIAS 441
Query: 429 GNAAGT--RAGV---SQVLNCLTYASTF 451
G +G+ ++ +N + Y S F
Sbjct: 442 RTGLGLMQNSGLVIMAENINRMRYMSHF 469
Score = 124 (48.7 bits), Expect = 0.00051, P = 0.00051
Identities = 49/200 (24%), Positives = 86/200 (43%)
Query: 315 ILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG 374
IL++ ++ H+ T + K +I +L CA G+ ++ D + + L G L
Sbjct: 327 ILRERVMIHLDTYE----DKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQ 382
Query: 375 GLFRTLFRKLTGDVRSYVQKCVDNG-----KDVNLQFAIKAKTITGGLKYSLATGNWGQG 429
VR +QK + + V Q +A + ++ LATGN
Sbjct: 383 KYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQAGGVGRAIESFLATGNIASR 442
Query: 430 NAAGT--RAGV---SQVLNCLTYASTF------TYYLSWKLAKPRQLHNSQWGMMCPAET 478
G +G+ ++ +N + Y S F +Y+ + + + RQL WG +CP T
Sbjct: 443 TGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHT 502
Query: 479 PEGQACGLVKNLALMVYITI 498
P+G CGL+ +L L I++
Sbjct: 503 PDGTPCGLLNHLTLTCEISM 522
>UNIPROTKB|F1SUA2 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677 GO:GO:0009790
GO:GO:0009303 GO:GO:0007566 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:CU856034 Ensembl:ENSSSCT00000008871
Uniprot:F1SUA2
Length = 1172
Score = 143 (55.4 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 94/379 (24%), Positives = 149/379 (39%)
Query: 102 RLRNLTYSAPLYVDVTKRV--IKKGHDGE---EVPIMLRSSYCTLYQNSQKALTELGECP 156
R R TY L D++ V I KG + VPIM++S C LY S +AL E E
Sbjct: 140 RGRRSTYRGRLTADISWAVNGISKGVIKQFLGYVPIMVKSKLCNLYSLSPRALIEHHEEA 199
Query: 157 YDEGGYFIINGSEKVL--IAQEKMSTNHVYV---FKKRQPNKYAYVAEVCSMAESQNRPP 211
+ GGYFIING EKV+ + + + V +K R P YV ++
Sbjct: 200 EEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKSRGPGYTQYVGVSMHCVREEHSA- 258
Query: 212 STIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQD 271
V M G +I+ + +P+ +AL +D I + + +D
Sbjct: 259 ----VNMNLHYLENGTVMLNFIYRKELFF---LPLGFALKALVSFSDYQIFQELIKGKED 311
Query: 272 TQMM-----ELLRPSLEEAFFIQNQ--QYIGKR-GATVGVTREKMIKYAKEILQKEMLP- 322
+ ++LR +EE Q Q Y+G+R V + + A E L E +
Sbjct: 312 DSFLRNSVSQMLRIVMEEGCATQKQVLNYLGERFRVKVNLPDWYPNEQAAEFLFNECICI 371
Query: 323 HVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFR 382
H+ + T+K Y + +L A G E++ D N+ + G L +
Sbjct: 372 HLKSN----TEKFYMLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLFLMFLKEKLE 427
Query: 383 KLTGDVRSYV-QKCVDNGKDVNLQFAIKAKTI----TGGLKYSLATGNWGQGNAAG--TR 435
++ + +K +N + +K + T +Y LATGN G
Sbjct: 428 AWLVSIKIAIDKKAQKTSVSLNTENLMKILNLGIDLTKPFEYLLATGNLRSKTGLGFLQD 487
Query: 436 AG---VSQVLNCLTYASTF 451
+G V+ LN + Y S F
Sbjct: 488 SGLCVVADKLNFIRYLSHF 506
Score = 125 (49.1 bits), Expect = 0.00042, P = 0.00042
Identities = 63/261 (24%), Positives = 106/261 (40%)
Query: 269 FQDTQMMELLRPSLEEAFFIQNQ--QYIGKR-GATVGVTREKMIKYAKEILQKEMLP-HV 324
F + ++LR +EE Q Q Y+G+R V + + A E L E + H+
Sbjct: 314 FLRNSVSQMLRIVMEEGCATQKQVLNYLGERFRVKVNLPDWYPNEQAAEFLFNECICIHL 373
Query: 325 GTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKL 384
+ T+K Y + +L A G E++ D N+ + G L +
Sbjct: 374 KSN----TEKFYMLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLFLMFLKEKLEAW 429
Query: 385 TGDVRSYV-QKCVDNGKDVNLQFAIKAKTI----TGGLKYSLATGNWGQGNAAG--TRAG 437
++ + +K +N + +K + T +Y LATGN G +G
Sbjct: 430 LVSIKIAIDKKAQKTSVSLNTENLMKILNLGIDLTKPFEYLLATGNLRSKTGLGFLQDSG 489
Query: 438 ---VSQVLNCLTYASTFTY------YLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 488
V+ LN + Y S F + + R+L WG +CP TP+G+ CGL+
Sbjct: 490 LCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMN 549
Query: 489 NL-ALMVYIT--IGSAAYPIL 506
+L A +T + +A+ P L
Sbjct: 550 HLTATCEVVTQFVYTASIPAL 570
>TIGR_CMR|CBU_0231 [details] [associations]
symbol:CBU_0231 "DNA-directed RNA polymerase, beta
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:CP001019 EMBL:U86688 GenomeReviews:CP001019_GR eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_002304193.1 ProteinModelPortal:B6J270 STRING:B6J270
PRIDE:B6J270 GeneID:7014190 KEGG:cbg:CbuG_1774 PATRIC:17914647
OMA:HANEEIT Uniprot:B6J270
Length = 1375
Score = 106 (42.4 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 36/145 (24%), Positives = 67/145 (46%)
Query: 351 GRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC-VDNGKDVNLQFAIK 409
G+ DD DH GN+R+ G + FR ++ V+ + V+N +L +
Sbjct: 459 GKGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKDRLSLADVENLMPQDL---VN 515
Query: 410 AKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLA--KPRQLHN 467
AK ++ +K + Q +S++ + ++ L+ + A + R +H
Sbjct: 516 AKPVSAAIKEFFGSSQLSQ--FMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHV 573
Query: 468 SQWGMMCPAETPEGQACGLVKNLAL 492
+ +G +CP ETPEG GL+ +LA+
Sbjct: 574 THYGRVCPIETPEGPNIGLINSLAV 598
Score = 88 (36.0 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 40/145 (27%), Positives = 74/145 (51%)
Query: 34 LVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEI-YLSKPMMTESDGE 92
L+ Q++S+ +F Q + E + +S S +A + Y+ + ES
Sbjct: 39 LLETQIESYRKFLQKDIAAEKREDNGLHAAFKSVFPITSYSGYAVLEYVGYSLGGES--- 95
Query: 93 TATLF-LKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTE 151
TLF ++ +LR LTY+APL V++ + VI +D +E P ++ ++ ++
Sbjct: 96 --TLFDVEECKLRGLTYAAPLKVNM-RLVI---YD-KEAPAGKKA-----IKDIKEQEVY 143
Query: 152 LGECPY-DEGGYFIINGSEKVLIAQ 175
+GE P E G +ING+E+V+++Q
Sbjct: 144 MGEIPLMTETGSLVINGTERVVVSQ 168
Score = 44 (20.5 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 241 RTEIPIIILFRALGFTADEDILE 263
R ++P ++ RALG+ E IL+
Sbjct: 221 RRKLPATVILRALGYDT-EQILD 242
Score = 41 (19.5 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 170 KVLI-AQEKMSTNHVYVFKKRQPNK 193
KV++ A ++S H+ + +K + NK
Sbjct: 281 KVIVEANRRISARHIRLIEKAEINK 305
>UNIPROTKB|Q9KV30 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 111 (44.1 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 40/154 (25%), Positives = 71/154 (46%)
Query: 341 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC-VDNG 399
++ +L+ G+ DD DH GN+R+ G + FR ++ V+ + +DN
Sbjct: 428 VMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDN- 486
Query: 400 KDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKL 459
V Q I AK I+ +K + Q +S+V + ++ L+ +
Sbjct: 487 --VMPQDLINAKPISAAVKEFFGSSQLSQ--FMDQNNPLSEVTHKRRISALGPGGLTRER 542
Query: 460 A--KPRQLHNSQWGMMCPAETPEGQACGLVKNLA 491
A + R +H + +G +CP ETPEG GL+ +L+
Sbjct: 543 AGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLS 576
Score = 80 (33.2 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 50/197 (25%), Positives = 83/197 (42%)
Query: 98 LKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPY 157
+K ++R +TYS PL V + + K + P ++ ++ +GE P
Sbjct: 82 VKECQIRGVTYSKPLRVKLRLVIFDK-----DAP-------AGTVKDIKEQEVYMGEIPL 129
Query: 158 -DEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV 216
E G F+ING+E+V+++Q S + K + + V + + F
Sbjct: 130 MTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189
Query: 217 PMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADE--DIL-EHICYDFQD-T 272
P Y+ R ++P I+ RALG T+ E DI E + ++ +D T
Sbjct: 190 P----------KDNLYVRIDR---RRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQT 236
Query: 273 QMMELLRPSL--EEAFF 287
MMEL+ L E A F
Sbjct: 237 LMMELVPERLRGETATF 253
Score = 63 (27.2 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 23/91 (25%), Positives = 41/91 (45%)
Query: 34 LVRQQLDSFDEF-NQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGE 92
L+ QLDSF++F Q+ + E+A + P +N + + L +P+
Sbjct: 27 LLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQSYNGNSELQYVSYRLGEPVFD----- 81
Query: 93 TATLFLKAARLRNLTYSAPLYVDVTKRVIKK 123
+K ++R +TYS PL V + + K
Sbjct: 82 -----VKECQIRGVTYSKPLRVKLRLVIFDK 107
>TIGR_CMR|VC_0328 [details] [associations]
symbol:VC_0328 "DNA-directed RNA polymerase, beta subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 111 (44.1 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 40/154 (25%), Positives = 71/154 (46%)
Query: 341 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC-VDNG 399
++ +L+ G+ DD DH GN+R+ G + FR ++ V+ + +DN
Sbjct: 428 VMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDN- 486
Query: 400 KDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKL 459
V Q I AK I+ +K + Q +S+V + ++ L+ +
Sbjct: 487 --VMPQDLINAKPISAAVKEFFGSSQLSQ--FMDQNNPLSEVTHKRRISALGPGGLTRER 542
Query: 460 A--KPRQLHNSQWGMMCPAETPEGQACGLVKNLA 491
A + R +H + +G +CP ETPEG GL+ +L+
Sbjct: 543 AGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLS 576
Score = 80 (33.2 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 50/197 (25%), Positives = 83/197 (42%)
Query: 98 LKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPY 157
+K ++R +TYS PL V + + K + P ++ ++ +GE P
Sbjct: 82 VKECQIRGVTYSKPLRVKLRLVIFDK-----DAP-------AGTVKDIKEQEVYMGEIPL 129
Query: 158 -DEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV 216
E G F+ING+E+V+++Q S + K + + V + + F
Sbjct: 130 MTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189
Query: 217 PMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADE--DIL-EHICYDFQD-T 272
P Y+ R ++P I+ RALG T+ E DI E + ++ +D T
Sbjct: 190 P----------KDNLYVRIDR---RRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQT 236
Query: 273 QMMELLRPSL--EEAFF 287
MMEL+ L E A F
Sbjct: 237 LMMELVPERLRGETATF 253
Score = 63 (27.2 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 23/91 (25%), Positives = 41/91 (45%)
Query: 34 LVRQQLDSFDEF-NQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGE 92
L+ QLDSF++F Q+ + E+A + P +N + + L +P+
Sbjct: 27 LLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQSYNGNSELQYVSYRLGEPVFD----- 81
Query: 93 TATLFLKAARLRNLTYSAPLYVDVTKRVIKK 123
+K ++R +TYS PL V + + K
Sbjct: 82 -----VKECQIRGVTYSKPLRVKLRLVIFDK 107
>TIGR_CMR|DET_0603 [details] [associations]
symbol:DET_0603 "DNA-directed RNA polymerase, beta
subunit" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 OMA:FMTWEGY
RefSeq:YP_181345.1 ProteinModelPortal:Q3Z8V4 STRING:Q3Z8V4
PRIDE:Q3Z8V4 GeneID:3230060 KEGG:det:DET0603 PATRIC:21608277
BioCyc:DETH243164:GJNF-604-MONOMER Uniprot:Q3Z8V4
Length = 1272
Score = 119 (46.9 bits), Expect = 1.7e-05, Sum P(4) = 1.7e-05
Identities = 48/158 (30%), Positives = 75/158 (47%)
Query: 341 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRT-LFR--KLTGDVRSYVQ-KCV 396
II R+++ G+ DD DH GN+R+ G L+ FR L R ++ + S V + V
Sbjct: 312 IIKRIIMVNNGQDTPDDIDHLGNRRIRTVGELVQNQFRIGLVRLERVARERMSIVNLEVV 371
Query: 397 DNGKDVNLQFAIKA-KTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYL 455
VN++ + A K GG + S Q N ++++ N ++ L
Sbjct: 372 TPSALVNIRPVVSAVKEFFGGSQLSQFMD---QTNP------LAEITNKRRLSAMGPGGL 422
Query: 456 SWKLA--KPRQLHNSQWGMMCPAETPEGQACGLVKNLA 491
S + A R +H S +G +CP ETPEG GL+ +LA
Sbjct: 423 SRERAGFDVRDVHYSHYGRICPIETPEGPNIGLIGSLA 460
Score = 56 (24.8 bits), Expect = 1.7e-05, Sum P(4) = 1.7e-05
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 241 RTEIPIIILFRALGFTADEDIL 262
R +IP+ L RA+G++ D DIL
Sbjct: 192 RRKIPVSTLLRAIGYSDDLDIL 213
Score = 54 (24.1 bits), Expect = 1.7e-05, Sum P(4) = 1.7e-05
Identities = 22/89 (24%), Positives = 42/89 (47%)
Query: 34 LVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGET 93
L+ QL SF F + ++E+++E + I+ + N + +F +P ++E +
Sbjct: 31 LIEMQLQSFVWFQEEGLRELIEEISPIK---DFVGNR-LELEFIGYEFREPRLSEYE--- 83
Query: 94 ATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
R+ TYS PLYV + ++K
Sbjct: 84 -------CTQRDQTYSVPLYVKA-RLIVK 104
Score = 42 (19.8 bits), Expect = 1.7e-05, Sum P(4) = 1.7e-05
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 161 GYFIINGSEKVLIAQ 175
G FI +G+E+V+++Q
Sbjct: 127 GTFITSGTERVVVSQ 141
>UNIPROTKB|P0A680 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0046677 GO:GO:0006351
EMBL:BX842574 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY EMBL:L27989 EMBL:U12205 EMBL:L05910 EMBL:AF143771
EMBL:AF146567 EMBL:AF147030 EMBL:AF147031 EMBL:AF147033
EMBL:AF147034 EMBL:S71246 PIR:F70535 RefSeq:NP_215181.1
RefSeq:NP_335107.1 RefSeq:YP_006514009.1 ProteinModelPortal:P0A680
SMR:P0A680 IntAct:P0A680 PRIDE:P0A680
EnsemblBacteria:EBMYCT00000001730 EnsemblBacteria:EBMYCT00000071499
GeneID:13318554 GeneID:888164 GeneID:925979 KEGG:mtc:MT0695
KEGG:mtu:Rv0667 KEGG:mtv:RVBD_0667 PATRIC:18123249
TubercuList:Rv0667 BindingDB:P0A680 ChEMBL:CHEMBL2006
Uniprot:P0A680
Length = 1178
Score = 114 (45.2 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 37/139 (26%), Positives = 62/139 (44%)
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITG 415
DD DH+GN+RL G L+ R ++ VR + + + + Q I + +
Sbjct: 368 DDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRE--RMTTQDVEAITPQTLINIRPVVA 425
Query: 416 GLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLA--KPRQLHNSQWGMM 473
+K T Q +S + + ++ LS + A + R +H S +G M
Sbjct: 426 AIKEFFGTSQLSQ--FMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRM 483
Query: 474 CPAETPEGQACGLVKNLAL 492
CP ETPEG GL+ +L++
Sbjct: 484 CPIETPEGPNIGLIGSLSV 502
Score = 70 (29.7 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 105 NLTYSAPLYVDVTKRVIK-KGHDGE-EVPIMLRSSYCTLYQNSQKALTE-LGECPY-DEG 160
+L++S P + DV V + K D P+ + + + K+ T +G+ P E
Sbjct: 104 SLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEK 163
Query: 161 GYFIINGSEKVLIAQ 175
G FIING+E+V+++Q
Sbjct: 164 GTFIINGTERVVVSQ 178
>TIGR_CMR|SO_0224 [details] [associations]
symbol:SO_0224 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:NP_715864.1 ProteinModelPortal:Q8EK74
PRIDE:Q8EK74 GeneID:1168107 KEGG:son:SO_0224 PATRIC:23520141
Uniprot:Q8EK74
Length = 1345
Score = 110 (43.8 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 37/138 (26%), Positives = 64/138 (46%)
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITG 415
DD DH GN+R+ G + FR ++ VR + + + ++ Q I AK I+
Sbjct: 444 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS--LGDLNELMPQDLINAKPISA 501
Query: 416 GLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLA--KPRQLHNSQWGMM 473
+K + Q +S+V + ++ L+ + A + R +H + +G +
Sbjct: 502 AVKEFFGSSQLSQ--FMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRL 559
Query: 474 CPAETPEGQACGLVKNLA 491
CP ETPEG GL+ +LA
Sbjct: 560 CPIETPEGPNIGLINSLA 577
Score = 75 (31.5 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 41/173 (23%), Positives = 73/173 (42%)
Query: 98 LKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPY 157
+K ++R +TYSAPL V + R++ +D R + ++ ++ +G+ P
Sbjct: 82 VKECQIRGVTYSAPLRVKL--RMVL--YD--------REAAAGTVKDIKEQEVYMGDIPL 129
Query: 158 -DEGGYFIINGSEKVLIAQEKMSTNHVYVF---KKRQPNKYAYVAEVC----SMAESQNR 209
+ G F+ING+E+V+++Q S + K K Y A + S + +
Sbjct: 130 MTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYRGSWLDFEFD 189
Query: 210 PPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDIL 262
P +FV R + I L Y EI + + F + F +D L
Sbjct: 190 PKDALFV----RIDRRRKLPATIILRALEYSTQEI-LDLFFERVEFKIKKDTL 237
>TIGR_CMR|GSU_2863 [details] [associations]
symbol:GSU_2863 "DNA-directed RNA polymerase, beta
subunit" species:243231 "Geobacter sulfurreducens PCA" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000218612
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 OMA:FMTWEGY
RefSeq:NP_953905.1 ProteinModelPortal:Q748Y6 PRIDE:Q748Y6
GeneID:2686783 KEGG:gsu:GSU2863 PATRIC:22028577
BioCyc:GSUL243231:GH27-2844-MONOMER Uniprot:Q748Y6
Length = 1370
Score = 100 (40.3 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 39/165 (23%), Positives = 75/165 (45%)
Query: 330 CETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVR 389
C+T ++ L+ G+ DD DH GN+R+ G LL +R ++ ++
Sbjct: 425 CQTLTKDDVLEVVRYLIDLKNGKGTIDDIDHLGNRRVRAVGELLENQYRIGLVRMERAIK 484
Query: 390 SYVQ-KCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYA 448
+ + V+N +L I +K ++ +K + Q +S+V + +
Sbjct: 485 ERMSLQEVENLMPHDL---INSKPVSAVVKEFFGSSQLSQ--FMDQTNPLSEVTHKRRLS 539
Query: 449 STFTYYLSWKLA--KPRQLHNSQWGMMCPAETPEGQACGLVKNLA 491
+ L+ + A + R +H + +G +CP ETPEG GL+ +L+
Sbjct: 540 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIASLS 584
Score = 84 (34.6 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 41/152 (26%), Positives = 66/152 (43%)
Query: 60 IEIRPESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARL-------RNLTYSAPL 112
I+ PE++ N G ++ F ++ K + E T L A + R +T++AP+
Sbjct: 41 IDTPPEARKNSGLEAVFKSVFPIKDFSDTASLEYVTYTLGAPKYDVEECHQRGMTFAAPM 100
Query: 113 YVDVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPY-DEGGYFIINGSEKV 171
V V V D +RS ++ ++ GE P E G FIING+E+V
Sbjct: 101 KVKVRLVVWDVNKDTG-----VRS-----IRDIKEQEVYFGEIPLMTENGTFIINGTERV 150
Query: 172 LIAQEKMSTNHVYVFKKRQPN---KYAYVAEV 200
+++Q S Y K + + K Y A V
Sbjct: 151 IVSQLHRSPGVFYDHDKGKTHSSGKVLYSARV 182
>UNIPROTKB|P0A8V2 [details] [associations]
symbol:rpoB "RNA polymerase, beta subunit" species:83333
"Escherichia coli K-12" [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016020
"membrane" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0016020 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006351 EMBL:U00006 DrugBank:DB01045 PDB:3IYD
PDBsum:3IYD GO:GO:0003899 EMBL:V00339 PDB:3T72 PDBsum:3T72
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 PDB:3LU0 PDBsum:3LU0 KO:K03043
ProtClustDB:PRK00405 Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3
TIGRFAMs:TIGR02013 OMA:FMTWEGY EMBL:V00340 EMBL:U76222 EMBL:V00341
EMBL:M38292 EMBL:M38293 EMBL:M38287 EMBL:M38304 EMBL:U77436
EMBL:M38303 PIR:F65205 RefSeq:NP_418414.1 RefSeq:YP_491474.1
PDB:3LTI PDB:3TBI PDBsum:3LTI PDBsum:3TBI ProteinModelPortal:P0A8V2
SMR:P0A8V2 DIP:DIP-35777N IntAct:P0A8V2 MINT:MINT-1222430
SWISS-2DPAGE:P0A8V2 PaxDb:P0A8V2 PRIDE:P0A8V2
EnsemblBacteria:EBESCT00000000939 EnsemblBacteria:EBESCT00000000940
EnsemblBacteria:EBESCT00000000941 EnsemblBacteria:EBESCT00000017696
GeneID:12934478 GeneID:948488 KEGG:ecj:Y75_p3210 KEGG:eco:b3987
PATRIC:32123495 EchoBASE:EB0887 EcoGene:EG10894
BioCyc:EcoCyc:RPOB-MONOMER BioCyc:ECOL316407:JW3950-MONOMER
BioCyc:MetaCyc:RPOB-MONOMER BindingDB:P0A8V2 ChEMBL:CHEMBL1852
DrugBank:DB01220 EvolutionaryTrace:P0A8V2 Genevestigator:P0A8V2
Uniprot:P0A8V2
Length = 1342
Score = 104 (41.7 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 36/154 (23%), Positives = 71/154 (46%)
Query: 341 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK 400
++ +L+ G+ DD DH GN+R+ G + FR ++ V+ + + +
Sbjct: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS--LGDLD 485
Query: 401 DVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLA 460
+ Q I AK I+ +K + Q +S++ + ++ L+ + A
Sbjct: 486 TLMPQDMINAKPISAAVKEFFGSSQLSQ--FMDQNNPLSEITHKRRISALGPGGLTRERA 543
Query: 461 --KPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 492
+ R +H + +G +CP ETPEG GL+ +L++
Sbjct: 544 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577
Score = 79 (32.9 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 57/249 (22%), Positives = 111/249 (44%)
Query: 60 IEIRPESQHNPGQQSDFAEIYLSKPMMTESDGETAT------LF-LKAARLRNLTYSAPL 112
IE PE Q+ G ++ F ++ + S+ + + +F ++ ++R +TYSAPL
Sbjct: 39 IEQDPEGQY--GLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPL 96
Query: 113 YVDVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPY-DEGGYFIINGSEKV 171
V + R++ + E + ++ ++ +GE P + G F+ING+E+V
Sbjct: 97 RVKL--RLVIYEREAPEGTV----------KDIKEQEVYMGEIPLMTDNGTFVINGTERV 144
Query: 172 LIAQEKMSTNHVYVFKKRQPN---KYAYVAEVC----SMAESQNRPPSTIFVPMLSRTSA 224
+++Q S + K + + K Y A + S + + P +FV + R
Sbjct: 145 IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFV-RIDR--- 200
Query: 225 KGGSSGQYIHATLPYIRTEIPIIILFRALGFTADE--DIL-EHICYDFQDTQM-MELLRP 280
R ++P I+ RAL +T ++ D+ E + ++ +D ++ MEL+
Sbjct: 201 ----------------RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE 244
Query: 281 SL--EEAFF 287
L E A F
Sbjct: 245 RLRGETASF 253
>UNIPROTKB|P60281 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:246196 "Mycobacterium smegmatis str. MC2 155" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01321 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR010243
InterPro:IPR014724 InterPro:IPR015712 InterPro:IPR019462
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF10385 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:CP000480 EMBL:CP001663 GenomeReviews:CP000480_GR GO:GO:0006351
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
HOGENOM:HOG000218611 OMA:FMTWEGY EMBL:AJ605718
RefSeq:YP_006566096.1 RefSeq:YP_885753.1 ProteinModelPortal:P60281
IntAct:P60281 STRING:P60281 EnsemblBacteria:EBMYCT00000043175
GeneID:13429143 GeneID:4535217 KEGG:msm:MSMEG_1367 PATRIC:18075189
BioCyc:MSME246196:GJ4Y-1367-MONOMER Uniprot:P60281
Length = 1169
Score = 114 (45.2 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 37/139 (26%), Positives = 62/139 (44%)
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITG 415
DD DH+GN+RL G L+ R ++ VR + + + + Q I + +
Sbjct: 359 DDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRE--RMTTQDVEAITPQTLINIRPVVA 416
Query: 416 GLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLA--KPRQLHNSQWGMM 473
+K T Q +S + + ++ LS + A + R +H S +G M
Sbjct: 417 AIKEFFGTSQLSQ--FMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRM 474
Query: 474 CPAETPEGQACGLVKNLAL 492
CP ETPEG GL+ +L++
Sbjct: 475 CPIETPEGPNIGLIGSLSV 493
Score = 67 (28.6 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 105 NLTYSAPLYVDVTKRVIK-KGHDGE-EVPIMLRSSYCTLYQNSQKALTE-LGECPY-DEG 160
+L++S P + +V V + K D P+ + + + K+ T +G+ P E
Sbjct: 95 SLSFSDPRFDEVKASVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEK 154
Query: 161 GYFIINGSEKVLIAQ 175
G FIING+E+V+++Q
Sbjct: 155 GTFIINGTERVVVSQ 169
>TIGR_CMR|CPS_4769 [details] [associations]
symbol:CPS_4769 "DNA-directed RNA polymerase, beta
subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_271413.1 STRING:Q47UV9 PRIDE:Q47UV9
GeneID:3523343 KEGG:cps:CPS_4769 PATRIC:21472355
BioCyc:CPSY167879:GI48-4775-MONOMER Uniprot:Q47UV9
Length = 1342
Score = 106 (42.4 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 37/143 (25%), Positives = 65/143 (45%)
Query: 351 GRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKA 410
G+ DD DH GN+R+ G + FR ++ VR + + + + Q I A
Sbjct: 439 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS--LGDLDAIMPQDLINA 496
Query: 411 KTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLA--KPRQLHNS 468
K I+ +K + Q +S+V + ++ L+ + A + R +H +
Sbjct: 497 KPISAAVKEFFGSSQLSQ--FMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPT 554
Query: 469 QWGMMCPAETPEGQACGLVKNLA 491
+G +CP ETPEG GL+ +L+
Sbjct: 555 HYGRVCPIETPEGPNIGLINSLS 577
Score = 75 (31.5 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 96 LF-LKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGE 154
LF +K ++R +TYSAPL V + R++ +D E ++ Q+ +GE
Sbjct: 79 LFDVKECQIRGVTYSAPLRVKL--RLVV--YDKEAAAGTVKDI------KEQEVY--MGE 126
Query: 155 CPY-DEGGYFIINGSEKVLIAQ 175
P + G F+ING+E+V+++Q
Sbjct: 127 IPLMTDNGTFVINGTERVIVSQ 148
Score = 43 (20.2 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 241 RTEIPIIILFRALGFTADEDILEHICYDFQD 271
R ++P I+ RAL ++ +E IL + YD D
Sbjct: 201 RRKLPASIILRALEYSTEE-ILA-MFYDTTD 229
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.403 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 518 501 0.00085 119 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 81
No. of states in DFA: 621 (66 KB)
Total size of DFA: 301 KB (2156 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 40.07u 0.13s 40.20t Elapsed: 00:00:02
Total cpu time: 40.09u 0.13s 40.22t Elapsed: 00:00:02
Start: Mon May 20 22:07:42 2013 End: Mon May 20 22:07:44 2013