BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046830
(518 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|350534526|ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 135 kDa polypeptide
gi|1049068|gb|AAC49273.1| RNA polymerase II subunit 2 [Solanum lycopersicum]
Length = 1191
Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/544 (85%), Positives = 484/544 (88%), Gaps = 35/544 (6%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
+D+EEE TQE+AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADIEIRPESQHN
Sbjct: 14 DDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 73
Query: 70 PGQQSDFAE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV 120
PG QSDFAE IYLSKPMMTESDGETATLF KAARLRNLTYSAPLYVDVTKRV
Sbjct: 74 PGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 133
Query: 121 IKKGHDGEEV--------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIIN 166
IKKGHDGEEV PIMLRSSYCTLYQNS+K LTELGECP D+GGYFIIN
Sbjct: 134 IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIIN 193
Query: 167 GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKG 226
GSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEV SMA++QNRPPST+FV MLSRTSAKG
Sbjct: 194 GSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPSTMFVRMLSRTSAKG 253
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
GSSGQYI ATLPYIRTEIPIII+FRALGF AD+DILEHICYDF DTQMMELLRPSLEEAF
Sbjct: 254 GSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAF 313
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQNQQ YIGKRGATVGVTREK IKYAKEILQKEMLPHVG G++CETKKAYYFG+II
Sbjct: 314 VIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYII 373
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR YVQKCVDNGKDV
Sbjct: 374 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDV 433
Query: 403 NLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW----- 457
NLQFAIKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++
Sbjct: 434 NLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 493
Query: 458 ---KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPILEFLEEWGT
Sbjct: 494 REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 553
Query: 515 ENFE 518
ENFE
Sbjct: 554 ENFE 557
>gi|449433841|ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Cucumis sativus]
gi|449479313|ref|XP_004155566.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Cucumis sativus]
Length = 1199
Score = 943 bits (2438), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/543 (85%), Positives = 482/543 (88%), Gaps = 35/543 (6%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNP 70
D+EEE TQE+AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADIEIRPESQHNP
Sbjct: 23 DDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 82
Query: 71 GQQSDFAE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVI 121
G QSD AE IYLSKPMMTESDGETATLF KAARLRNLTYSAPLYVDV+KRVI
Sbjct: 83 GHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVI 142
Query: 122 KKGHDGEEV--------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIING 167
KKGHDGEEV PIMLRSSYCTLYQNS+K LTELGECPYD+GGYFIING
Sbjct: 143 KKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING 202
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEV SMAESQNRPPST+FV MLSRTSAKGG
Sbjct: 203 SEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 262
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPYIR EIPIII+FRALGF AD+DILEHICYDF DTQMMELLRPSLEEAF
Sbjct: 263 SSGQYIRATLPYIRNEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV 322
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVT+EK IKYAKEILQKEMLPHVG G+FCETKKAYYFG+IIH
Sbjct: 323 IQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIH 382
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR YVQKCVDNGKDVN
Sbjct: 383 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVN 442
Query: 404 LQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW------ 457
LQFAIKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++
Sbjct: 443 LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 502
Query: 458 --KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPILEFLEEWGTE
Sbjct: 503 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 562
Query: 516 NFE 518
NFE
Sbjct: 563 NFE 565
>gi|224077110|ref|XP_002305136.1| predicted protein [Populus trichocarpa]
gi|222848100|gb|EEE85647.1| predicted protein [Populus trichocarpa]
Length = 690
Score = 942 bits (2435), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/545 (85%), Positives = 479/545 (87%), Gaps = 43/545 (7%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
TQE+AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADIEIRPESQHNPG QSDF
Sbjct: 13 TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDF 72
Query: 77 AE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
AE IYLSKPMMTESDGETATLF KAARLRNLTYSAPLYVDVTKRVIKKGHDG
Sbjct: 73 AETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDG 132
Query: 128 EEV----------------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFII 165
EEV PIMLRSSYCTLYQNS+K LTELGECPYD+GGYFII
Sbjct: 133 EEVTETQDFTKVFIGKASIMNYLFVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 192
Query: 166 NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAK 225
NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EV SMAESQNRPPST+FV MLSRTSAK
Sbjct: 193 NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSRTSAK 252
Query: 226 GGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA 285
GGSSGQYI ATLPYIRTEIPIII+FRALGF AD+DILEHICYDF DTQMMELLRPSLEEA
Sbjct: 253 GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEA 312
Query: 286 FFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHI 341
F IQNQQ YIGKRGATVGVTREK IKYAKEILQKEMLPHVG G++CETKKAYYFG+I
Sbjct: 313 FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI 372
Query: 342 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD 401
IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVRSYVQKCVDNGKD
Sbjct: 373 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKD 432
Query: 402 VNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW---- 457
VNLQFAIKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++
Sbjct: 433 VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 492
Query: 458 ----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPILEFLEEWG
Sbjct: 493 GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 552
Query: 514 TENFE 518
TENFE
Sbjct: 553 TENFE 557
>gi|70794966|gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron
macrophyllum]
Length = 1191
Score = 941 bits (2431), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/537 (86%), Positives = 479/537 (89%), Gaps = 35/537 (6%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
TQE+AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADIEIRPESQHNPG QSDF
Sbjct: 21 TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDF 80
Query: 77 AE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
AE IYLSKPMMTESDGETATLF KAARLRNLTYSAPLYVDVTKRVIKKGHDG
Sbjct: 81 AETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDG 140
Query: 128 EEV--------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLI 173
EEV PIMLRSSYCTLYQNS+K LTELGECPYD+GGYFIINGSEKVLI
Sbjct: 141 EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLI 200
Query: 174 AQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI 233
AQEKMSTNHVYVFKKRQPNKYAYVAEV SMAESQNRPPST+FV MLSRTSAKGGSSGQYI
Sbjct: 201 AQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI 260
Query: 234 HATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ- 292
ATLPYIRTEIPIII+FRALGF AD+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ
Sbjct: 261 RATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQV 320
Query: 293 ---YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCA 349
YIGKRGATVGVT+EK IKYAKEILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCA
Sbjct: 321 ALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCA 380
Query: 350 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIK 409
LGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR YVQKCVDNGKDVNLQFAIK
Sbjct: 381 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIK 440
Query: 410 AKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAK 461
AKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++ KLAK
Sbjct: 441 AKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 500
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPILEFLEEWGTENFE
Sbjct: 501 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 557
>gi|255556051|ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
Length = 1194
Score = 939 bits (2427), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/533 (87%), Positives = 476/533 (89%), Gaps = 35/533 (6%)
Query: 21 AWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE-- 78
AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADIEIRPESQHNPG QSDFAE
Sbjct: 28 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 87
Query: 79 -------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV- 130
IYLSKPMMTESDGETATLF KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV
Sbjct: 88 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 147
Query: 131 -------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
PIMLRSSYCTLYQNS+K LTELGECPYD+GGYFIINGSEKVLIAQEK
Sbjct: 148 ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATL 237
MSTNHVYVFKKRQPNKYAYVAEV SMAESQNRPPST+FV MLSRTSAKGGSSGQYI ATL
Sbjct: 208 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 267
Query: 238 PYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----Y 293
PYIRTEIPIII+FRALGF AD+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ Y
Sbjct: 268 PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 327
Query: 294 IGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRR 353
IGKRGATVGVT+EK IKYAKEILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCALGRR
Sbjct: 328 IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 387
Query: 354 AEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTI 413
AEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVRSYVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 388 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 447
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQL 465
T GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++ KLAKPRQL
Sbjct: 448 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 507
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
HNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPILEFLEEWGTENFE
Sbjct: 508 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 560
>gi|297799890|ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
lyrata]
gi|297313665|gb|EFH44088.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
lyrata]
Length = 1188
Score = 938 bits (2425), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/550 (84%), Positives = 485/550 (88%), Gaps = 35/550 (6%)
Query: 4 EEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR 63
E + +E+D++EE TQE+AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADIEIR
Sbjct: 9 EPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIR 68
Query: 64 PESQHNPGQQSDFAE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYV 114
PESQHNPG QSDFAE IYLSKPMMTESDGETATLF KAARLRNLTYSAPLYV
Sbjct: 69 PESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYV 128
Query: 115 DVTKRVIKKGHDGEEV--------------PIMLRSSYCTLYQNSQKALTELGECPYDEG 160
DVTKRVIKKGHDGEEV PIMLRSSYCTL+QNS+K LTELGECPYD+G
Sbjct: 129 DVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQG 188
Query: 161 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLS 220
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EV SMAE+QNRPPST+FV ML+
Sbjct: 189 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLA 248
Query: 221 RTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRP 280
R SAKGGSSGQYI TLPYIRTEIPIII+FRALGF AD+DILEHICYDF DTQMMELLRP
Sbjct: 249 RASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRP 308
Query: 281 SLEEAFFIQNQ----QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAY 336
SLEEAF IQNQ YIGKRGATVGVT+EK IKYAK+ILQKEMLPHVG G++CETKKAY
Sbjct: 309 SLEEAFVIQNQLVALDYIGKRGATVGVTKEKRIKYAKDILQKEMLPHVGIGEYCETKKAY 368
Query: 337 YFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
YFG+IIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVRSYVQKCV
Sbjct: 369 YFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCV 428
Query: 397 DNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
DNGK+VNLQFAIKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++
Sbjct: 429 DNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 488
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPILEF
Sbjct: 489 LNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEF 548
Query: 509 LEEWGTENFE 518
LEEWGTENFE
Sbjct: 549 LEEWGTENFE 558
>gi|15234572|ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
gi|21542437|sp|P38420.2|RPB2_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 135 kDa polypeptide; AltName: Full=Protein EMBRYO
DEFECTIVE 1989
gi|4455279|emb|CAB36815.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
[Arabidopsis thaliana]
gi|7268968|emb|CAB81278.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
[Arabidopsis thaliana]
gi|332659093|gb|AEE84493.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
Length = 1188
Score = 936 bits (2418), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/550 (83%), Positives = 484/550 (88%), Gaps = 35/550 (6%)
Query: 4 EEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR 63
E + +E+D++EE TQE+AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADIEIR
Sbjct: 9 EPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIR 68
Query: 64 PESQHNPGQQSDFAE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYV 114
PESQHNPG QSDFAE IYLSKPMMTESDGETATLF KAARLRNLTYSAPLYV
Sbjct: 69 PESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYV 128
Query: 115 DVTKRVIKKGHDGEEV--------------PIMLRSSYCTLYQNSQKALTELGECPYDEG 160
DVTKRVIKKGHDGEEV PIMLRSSYCTL+QNS+K LTELGECPYD+G
Sbjct: 129 DVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQG 188
Query: 161 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLS 220
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EV SMAE+QNRPPST+FV ML+
Sbjct: 189 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLA 248
Query: 221 RTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRP 280
R SAKGGSSGQYI TLPYIRTEIPIII+FRALGF AD+DILEHICYDF DTQMMELLRP
Sbjct: 249 RASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRP 308
Query: 281 SLEEAFFIQNQ----QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAY 336
SLEEAF IQNQ YIGKRGATVGVT+EK IKYA++ILQKEMLPHVG G+ CETKKAY
Sbjct: 309 SLEEAFVIQNQLVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPHVGIGEHCETKKAY 368
Query: 337 YFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
YFG+IIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVRSYVQKCV
Sbjct: 369 YFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCV 428
Query: 397 DNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
DNGK+VNLQFAIKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++
Sbjct: 429 DNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 488
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPILEF
Sbjct: 489 LNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEF 548
Query: 509 LEEWGTENFE 518
LEEWGTENFE
Sbjct: 549 LEEWGTENFE 558
>gi|68300812|gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida]
Length = 1195
Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/537 (86%), Positives = 478/537 (89%), Gaps = 35/537 (6%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
TQE+AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADIEIRPESQHNPG QSDF
Sbjct: 25 TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDF 84
Query: 77 AE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
AE IYLSKPMMTESDGETATLF KAARLRNLTYSAPLYVDVTKRVIKKGHDG
Sbjct: 85 AETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDG 144
Query: 128 EEV--------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLI 173
EEV PIMLRSSYCTLYQNS+K LTELGECP D+GGYFIINGSEKVLI
Sbjct: 145 EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLI 204
Query: 174 AQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI 233
AQEKMSTNHVYVFKKRQPNKYA+VAEV SMAESQNRPPST+FV MLSRTSAKGGSSGQYI
Sbjct: 205 AQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI 264
Query: 234 HATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ- 292
ATLPYIRTEIPIII+FRALGF AD+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ
Sbjct: 265 RATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQV 324
Query: 293 ---YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCA 349
YIGKRGATVGVT+EK IKYAKEILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCA
Sbjct: 325 ALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCA 384
Query: 350 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIK 409
LGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVRSYVQKCVDNGKDVNLQFAIK
Sbjct: 385 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIK 444
Query: 410 AKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAK 461
AKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++ KLAK
Sbjct: 445 AKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 504
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPILEFLEE GTENFE
Sbjct: 505 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEXGTENFE 561
>gi|356558375|ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Glycine max]
Length = 1193
Score = 931 bits (2405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/533 (86%), Positives = 474/533 (88%), Gaps = 35/533 (6%)
Query: 21 AWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE-- 78
AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADIEIRPESQHNPG QSDFAE
Sbjct: 28 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 87
Query: 79 -------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV- 130
IYLSKPMMTESDGETATLF KAARLRNLTYSAPLYVDV+KRV+KKGHDGEEV
Sbjct: 88 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVVKKGHDGEEVT 147
Query: 131 -------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
PIMLRSSYCTLYQNS+K LTELGECPYD+GGYFIINGSEKVLIAQEK
Sbjct: 148 ETQDLTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATL 237
MSTNHVYVFKKRQPNKYAYVAEV SMAESQNRPPST+FV MLSRTS+KGGSSGQYI ATL
Sbjct: 208 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATL 267
Query: 238 PYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----Y 293
PYIRTEIPIII+FRALGF AD+DILEHICYDF DT MMELLRPSLEEAF IQNQQ Y
Sbjct: 268 PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTLMMELLRPSLEEAFVIQNQQVALDY 327
Query: 294 IGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRR 353
IGKRGATVGVT+EK IKYAKEILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCALGRR
Sbjct: 328 IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 387
Query: 354 AEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTI 413
AEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR YVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 388 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTI 447
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQL 465
T GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++ KLAKPRQL
Sbjct: 448 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 507
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
HNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPILEFLEEWGTENFE
Sbjct: 508 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 560
>gi|356530409|ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Glycine max]
Length = 1192
Score = 930 bits (2404), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/533 (86%), Positives = 474/533 (88%), Gaps = 35/533 (6%)
Query: 21 AWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE-- 78
AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADIEIRPESQHNPG QSDFAE
Sbjct: 28 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 87
Query: 79 -------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV- 130
IYLSKPMMTESDGETATLF KAARLRNLTYSAPLYVDV+KRVIKKGHDGEEV
Sbjct: 88 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVT 147
Query: 131 -------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
PIMLRSSYCTLYQNS+K LTELGECPYD+GGYFIINGSEKVLIAQEK
Sbjct: 148 EAQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATL 237
MSTNHVYVFKKRQPNKYAYVAEV SMAESQNRPPST+FV MLSRTS+KGGSSGQYI ATL
Sbjct: 208 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATL 267
Query: 238 PYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----Y 293
PYIRTEIPIII+FRALGF AD+DILEHICYDF TQMMELLRPSLEEAF IQNQQ Y
Sbjct: 268 PYIRTEIPIIIVFRALGFVADKDILEHICYDFSYTQMMELLRPSLEEAFVIQNQQVALDY 327
Query: 294 IGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRR 353
IGKRGATVGVT+EK IKYAKEILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCALGRR
Sbjct: 328 IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 387
Query: 354 AEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTI 413
AEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR YVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 388 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTI 447
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQL 465
T GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++ KLAKPRQL
Sbjct: 448 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 507
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
HNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPILEFLEEWGTENFE
Sbjct: 508 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 560
>gi|357438193|ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 1213
Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/533 (85%), Positives = 473/533 (88%), Gaps = 35/533 (6%)
Query: 21 AWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE-- 78
AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADIEIRPESQHNPG QSDFAE
Sbjct: 29 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 88
Query: 79 -------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV- 130
IYLSKPMMTESDGETATLF KAARLRNLTYSAPLYVDV+KRVIKKGHDGEEV
Sbjct: 89 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVT 148
Query: 131 -------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
PIMLRSSYCTLYQNS+K LTELGECPYD+GGYFIINGSEKVLIAQEK
Sbjct: 149 ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 208
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATL 237
MSTNHVYVFKKRQPNKYAYV EV SMAESQNRPPST+FV MLSR SAKGGSSGQYI ATL
Sbjct: 209 MSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSRASAKGGSSGQYIRATL 268
Query: 238 PYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----Y 293
PYIRTEIPIII+FRALGF AD+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ Y
Sbjct: 269 PYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDY 328
Query: 294 IGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRR 353
IGKRG+TVGVT+EK IKYAK+ILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCALGRR
Sbjct: 329 IGKRGSTVGVTKEKRIKYAKDILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 388
Query: 354 AEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTI 413
AEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR YVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 389 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTI 448
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQL 465
T GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++ KLAKPRQL
Sbjct: 449 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 508
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
HNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPILEFLEEWGTENFE
Sbjct: 509 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 561
>gi|68300814|gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
Length = 1200
Score = 929 bits (2401), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/539 (84%), Positives = 478/539 (88%), Gaps = 35/539 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
+ +QE+AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADIEIRPESQHNPGQQ
Sbjct: 28 DISQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQP 87
Query: 75 DFAE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGH 125
DFAE IYLSKPMMTESDGETATLF KAARLRNLTYSAPLYVDV+KRVIKKGH
Sbjct: 88 DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGH 147
Query: 126 DGEEV--------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKV 171
DGEEV PIMLRSSYCTLYQNS+K LTELGECP D+GGYFIINGSEKV
Sbjct: 148 DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKV 207
Query: 172 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ 231
LIAQEKMSTNHVYVFKKRQPNKYAYVAEV SMAE+QNRPPST+FV MLSRTSAKGGSSGQ
Sbjct: 208 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAEAQNRPPSTMFVRMLSRTSAKGGSSGQ 267
Query: 232 YIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ 291
YI ATLPYIRTEIPIII+FRALGF AD+DILEHIC++ DTQMMELLRPSLEEAF IQNQ
Sbjct: 268 YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICFNSSDTQMMELLRPSLEEAFVIQNQ 327
Query: 292 Q----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLL 347
Q YIGKRG+TVGVT+EK IKYAKEILQKEMLPHVG G++CETKKAYYFG+IIHRLLL
Sbjct: 328 QVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLL 387
Query: 348 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA 407
CALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVRSYVQKCVDNGKDVNLQF
Sbjct: 388 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFX 447
Query: 408 IKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KL 459
IKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++ KL
Sbjct: 448 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLBSPIGREGKL 507
Query: 460 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPILEFLEEWGTENFE
Sbjct: 508 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 566
>gi|16486|emb|CAA79528.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
Length = 1188
Score = 929 bits (2401), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/550 (83%), Positives = 483/550 (87%), Gaps = 35/550 (6%)
Query: 4 EEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR 63
E + +E+D++EE TQE+AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADIEIR
Sbjct: 9 EPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIR 68
Query: 64 PESQHNPGQQSDFAE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYV 114
PESQHNPG QSDFAE IYLSKPMMTESDGETATLF KAARLRNLTYSAPLYV
Sbjct: 69 PESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYV 128
Query: 115 DVTKRVIKKGHDGEEV--------------PIMLRSSYCTLYQNSQKALTELGECPYDEG 160
DVTKRVIKKGHDGEEV PIMLRSSYCTL+QNS+K LTELGECPYD+G
Sbjct: 129 DVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQG 188
Query: 161 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLS 220
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EV SMAE+QNRPPST+FV ML+
Sbjct: 189 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLA 248
Query: 221 RTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRP 280
R SAKGGSSGQYI TLPYIRTEIPIII+FRALGF AD+DILEHICYDF DTQMMELLRP
Sbjct: 249 RASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRP 308
Query: 281 SLEEAFFIQNQ----QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAY 336
SLEEAF IQNQ YIGKRGATVGVT+EK IKYA++ILQKEML +VG G+ CETKKAY
Sbjct: 309 SLEEAFVIQNQLVALDYIGKRGATVGVTKEKRIKYARDILQKEMLLYVGIGEHCETKKAY 368
Query: 337 YFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
YFG+IIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVRSYVQKCV
Sbjct: 369 YFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCV 428
Query: 397 DNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
DNGK+VNLQFAIKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++
Sbjct: 429 DNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 488
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPILEF
Sbjct: 489 LNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEF 548
Query: 509 LEEWGTENFE 518
LEEWGTENFE
Sbjct: 549 LEEWGTENFE 558
>gi|16488|emb|CAA79527.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
Length = 1188
Score = 929 bits (2400), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/550 (83%), Positives = 483/550 (87%), Gaps = 35/550 (6%)
Query: 4 EEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR 63
E + +E+D++EE TQE+AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADIEIR
Sbjct: 9 EPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIR 68
Query: 64 PESQHNPGQQSDFAE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYV 114
PESQHNPG QSDFAE IYLSKPMMTESDGETATLF KAARLRNLTYSAPLYV
Sbjct: 69 PESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYV 128
Query: 115 DVTKRVIKKGHDGEEV--------------PIMLRSSYCTLYQNSQKALTELGECPYDEG 160
DVTKRVIKKGHDGEEV PIMLRSSYCTL+QNS+K LTELGECPYD+G
Sbjct: 129 DVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQG 188
Query: 161 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLS 220
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EV SMAE+QNRPPST+FV ML+
Sbjct: 189 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLA 248
Query: 221 RTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRP 280
R SAKGGSSGQYI TLPYIRTEIPIII+FRALGF AD+DILEHICYDF DTQMMELLRP
Sbjct: 249 RASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRP 308
Query: 281 SLEEAFFIQNQ----QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAY 336
SLEEAF IQNQ YIGKRGATVGVT+EK IKYA++ILQKEML +VG G+ CETKKAY
Sbjct: 309 SLEEAFVIQNQLVALDYIGKRGATVGVTKEKRIKYARDILQKEMLLYVGIGEHCETKKAY 368
Query: 337 YFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
YFG+IIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVRSYVQKCV
Sbjct: 369 YFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCV 428
Query: 397 DNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
DNGK+VNLQFAIKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++
Sbjct: 429 DNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 488
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPILEF
Sbjct: 489 LNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEF 548
Query: 509 LEEWGTENFE 518
LEEWGTENFE
Sbjct: 549 LEEWGTENFE 558
>gi|225446351|ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
vinifera]
gi|147841183|emb|CAN72948.1| hypothetical protein VITISV_033708 [Vitis vinifera]
gi|302143287|emb|CBI21848.3| unnamed protein product [Vitis vinifera]
Length = 1193
Score = 926 bits (2392), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/537 (85%), Positives = 475/537 (88%), Gaps = 35/537 (6%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
TQE+AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADIEIRPESQHNPG+QSDF
Sbjct: 23 TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDF 82
Query: 77 AE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
E IYLSKPMMTESDGETATLF KAARLRNLTYSAPLYVDVTKR+IKKGHD
Sbjct: 83 LETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDL 142
Query: 128 EEV--------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLI 173
EEV PIMLRSSYCT+YQNS+K LTELGECPYD+GGYFIINGSEKVLI
Sbjct: 143 EEVTETQEFTKVFIGKVPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIINGSEKVLI 202
Query: 174 AQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI 233
AQEKMSTNHVYVFKKRQPNKYAYVAEV SMAESQNRPPS++FV MLSRTSAKGGSSGQYI
Sbjct: 203 AQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYI 262
Query: 234 HATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ- 292
ATLPYIRTEIPIII+FRALGF AD+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ
Sbjct: 263 RATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQV 322
Query: 293 ---YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCA 349
YIGKRG+TVGVTREK IKYAKEILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCA
Sbjct: 323 ALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCA 382
Query: 350 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIK 409
LGRR EDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR+YVQKCVDNGKDVNLQFAIK
Sbjct: 383 LGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIK 442
Query: 410 AKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAK 461
AKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++ KLAK
Sbjct: 443 AKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 502
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PRQLHNS WGMMCPAETPEGQACGLVKNLALMVYIT+GSAA PILEFLEEW TENFE
Sbjct: 503 PRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFE 559
>gi|108710089|gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
expressed [Oryza sativa Japonica Group]
gi|125545063|gb|EAY91202.1| hypothetical protein OsI_12811 [Oryza sativa Indica Group]
Length = 1222
Score = 913 bits (2359), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/553 (81%), Positives = 481/553 (86%), Gaps = 37/553 (6%)
Query: 3 MEEERLEED--EEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
ME+E + D +EEE TQE+AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADI
Sbjct: 39 MEDEEADGDAPDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 98
Query: 61 EIRPESQHNPGQQSDFAE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
EIRPESQHNPG+Q++FAE IYLSKPMMTE+DGETATLF K+ARLRNLTYSAP
Sbjct: 99 EIRPESQHNPGRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAP 158
Query: 112 LYVDVTKRVIKKGHDGEEV--------------PIMLRSSYCTLYQNSQKALTELGECPY 157
LYVDV+ RV+KKGHD EEV PIMLRSSYCTL+Q S+K LTELGECPY
Sbjct: 159 LYVDVSYRVMKKGHDCEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPY 218
Query: 158 DEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVP 217
D+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEV SMAE+QNRP S++FV
Sbjct: 219 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVR 278
Query: 218 MLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMEL 277
MLSR AKGGSSGQYI ATLPYIR +IPIII+FRALGF AD+DILEHICYDF DTQMMEL
Sbjct: 279 MLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMEL 338
Query: 278 LRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETK 333
LRPSLEEAF IQNQQ YIGKRGATVGVT+EK IKYAKEILQKEMLPHVG G+FCETK
Sbjct: 339 LRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETK 398
Query: 334 KAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQ 393
KAYYFG+IIHRLL+CALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVRSYVQ
Sbjct: 399 KAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQ 458
Query: 394 KCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
KCVDNGK+VNLQFAIKAKTIT GLKYSLATGNWGQ N AGTRAGVSQVLN LTYAST ++
Sbjct: 459 KCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSH 518
Query: 454 YLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
KLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYIT+GSAA PI
Sbjct: 519 LRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPI 578
Query: 506 LEFLEEWGTENFE 518
LEFLEEWGTENFE
Sbjct: 579 LEFLEEWGTENFE 591
>gi|222625458|gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
Length = 1218
Score = 911 bits (2355), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/542 (82%), Positives = 475/542 (87%), Gaps = 35/542 (6%)
Query: 12 EEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPG 71
+EEE TQE+AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADIEIRPESQHNPG
Sbjct: 46 DEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 105
Query: 72 QQSDFAE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
+Q++FAE IYLSKPMMTE+DGETATLF K+ARLRNLTYSAPLYVDV+ RV+K
Sbjct: 106 RQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMK 165
Query: 123 KGHDGEEV--------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGS 168
KGHD EEV PIMLRSSYCTL+Q S+K LTELGECPYD+GGYFIINGS
Sbjct: 166 KGHDCEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFIINGS 225
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGS 228
EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEV SMAE+QNRP S++FV MLSR AKGGS
Sbjct: 226 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGS 285
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
SGQYI ATLPYIR +IPIII+FRALGF AD+DILEHICYDF DTQMMELLRPSLEEAF I
Sbjct: 286 SGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVI 345
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
QNQQ YIGKRGATVGVT+EK IKYAKEILQKEMLPHVG G+FCETKKAYYFG+IIHR
Sbjct: 346 QNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHR 405
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LL+CALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVRSYVQKCVDNGK+VNL
Sbjct: 406 LLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNL 465
Query: 405 QFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW------- 457
QFAIKAKTIT GLKYSLATGNWGQ N AGTRAGVSQVLN LTYAST ++
Sbjct: 466 QFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 525
Query: 458 -KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
KLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYIT+GSAA PILEFLEEWGTEN
Sbjct: 526 GKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTEN 585
Query: 517 FE 518
FE
Sbjct: 586 FE 587
>gi|357120315|ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Brachypodium distachyon]
Length = 1228
Score = 907 bits (2345), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/537 (83%), Positives = 471/537 (87%), Gaps = 35/537 (6%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
TQE+AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADIEIRPESQHNPG+Q++F
Sbjct: 61 TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEF 120
Query: 77 AE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
AE IYLSKPMMTE+DGETATLF K+ARLRNLTYSAPLYVDV+ RV+KKGHD
Sbjct: 121 AETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVVKKGHDC 180
Query: 128 EEV--------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLI 173
EEV PIMLRSSYCTL+Q S+K LTELGECPYD+GGYF+INGSEKVLI
Sbjct: 181 EEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFVINGSEKVLI 240
Query: 174 AQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI 233
AQEKMSTNHVYVFKKRQPNK+AYVAEV SMAE+QNRP S++FV MLSR AKGGSSGQYI
Sbjct: 241 AQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQYI 300
Query: 234 HATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ- 292
ATLPYIR +IPIII+FRALGF AD+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ
Sbjct: 301 RATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQV 360
Query: 293 ---YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCA 349
YIGKRGATVGVTREK IKYAKEILQKEMLPHVG G+FCETKKAYYFG+IIHRLL+CA
Sbjct: 361 ALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCA 420
Query: 350 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIK 409
LGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVRSYVQKCVDNGKDVNLQFAIK
Sbjct: 421 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIK 480
Query: 410 AKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAK 461
AKTIT GLKYSLATGNWGQ N AGTRAGVSQVLN LTYAST ++ KLAK
Sbjct: 481 AKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 540
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PRQLHNS WGMMCPAETPEGQACGLVKNLALMVYIT+GSAA PILEFLEEWGTENFE
Sbjct: 541 PRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFE 597
>gi|414871745|tpg|DAA50302.1| TPA: hypothetical protein ZEAMMB73_468424, partial [Zea mays]
Length = 762
Score = 905 bits (2338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/545 (81%), Positives = 475/545 (87%), Gaps = 35/545 (6%)
Query: 9 EEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH 68
+ +++E+ TQ++AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADIEIRPESQH
Sbjct: 52 DAEQQEDITQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 111
Query: 69 NPGQQSDFAE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR 119
NPG+Q++FAE IYLSKPMMTE+DGETATLF K+ARLRNLTYSAPLYVDV+ R
Sbjct: 112 NPGRQAEFAETLHRISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYR 171
Query: 120 VIKKGHDGEEV--------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFII 165
V+KKGHD EEV PIMLRSSYCTLYQ S+K LTELGECPYD+GGYFII
Sbjct: 172 VMKKGHDCEEVTETAEYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGECPYDQGGYFII 231
Query: 166 NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAK 225
NGSEKVLIAQEKMSTNHVYVFKKRQPNK+AYVAEV SMAE+QNRP S +FV MLSR AK
Sbjct: 232 NGSEKVLIAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASGMFVRMLSRAGAK 291
Query: 226 GGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA 285
GGSSGQYI ATLPYIR +IPIII+FRALGF AD+DILEHICYDF DTQMMELLRPSLEEA
Sbjct: 292 GGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEA 351
Query: 286 FFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHI 341
F IQNQQ YIGKRGATVGVTREK IKYAKEILQKEMLPHVG G+FCETKKAYYFG+I
Sbjct: 352 FVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYI 411
Query: 342 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD 401
IHRLL+CAL RRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVRSYVQKCVDNGK+
Sbjct: 412 IHRLLMCALSRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKE 471
Query: 402 VNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW---- 457
VNLQFAIKAKT+T GLKYSLATGNWGQ N AGTRAGVSQVLN LTYAST ++
Sbjct: 472 VNLQFAIKAKTVTSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 531
Query: 458 ----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYIT+GSAA PILEFLEEWG
Sbjct: 532 GREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWG 591
Query: 514 TENFE 518
TENFE
Sbjct: 592 TENFE 596
>gi|302781178|ref|XP_002972363.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
gi|300159830|gb|EFJ26449.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
Length = 1178
Score = 877 bits (2266), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/545 (78%), Positives = 461/545 (84%), Gaps = 37/545 (6%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNP 70
DEEEE TQE+AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDES++IEI+PESQHNP
Sbjct: 2 DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSEIEIKPESQHNP 61
Query: 71 GQQSD----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV 120
G+ ++ F +IYLSKPMMTESDGETATLF KAARLRNLTYSAPLY D+ K V
Sbjct: 62 GRNNEYSGETTFKIKFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYADIIKYV 121
Query: 121 IKKGHDGEE--------------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIIN 166
+KG DGEE VPIMLRSSYCTLYQNS K LTELGECPYD+GGYFIIN
Sbjct: 122 TRKGEDGEEDTEQEELPKVFIGKVPIMLRSSYCTLYQNSDKDLTELGECPYDQGGYFIIN 181
Query: 167 GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKG 226
GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEV SMAESQNRP S++FV MLSR AK
Sbjct: 182 GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPASSMFVRMLSRAGAKA 241
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
GSSGQYI ATLPYI+ EIPII++FRALGF AD+DILEHICYDF DT MMELLRPSLEEAF
Sbjct: 242 GSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTAMMELLRPSLEEAF 301
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQNQQ YIGKRG+TVGVTREK IKYAK+ILQKEMLPHVG G++CETKKAY+FG+II
Sbjct: 302 VIQNQQVALDYIGKRGSTVGVTREKRIKYAKDILQKEMLPHVGVGEYCETKKAYFFGYII 361
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG LFR LFRKLT DVR+Y+QKCVDNGK+V
Sbjct: 362 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRQLFRKLTKDVRAYLQKCVDNGKEV 421
Query: 403 NLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWK---- 458
NL +A+KAKTIT GLKYSLATGNWGQ N+ RAGVSQVLN LTYAST ++
Sbjct: 422 NLAYAVKAKTITSGLKYSLATGNWGQANSGNARAGVSQVLNRLTYASTLSHLRRLNSPIG 481
Query: 459 -----LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
LAKPRQLHNS WGMMCPAETPEGQACGLVKNLALM YIT+GSAA PIL FLEEW
Sbjct: 482 REGRLLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMAYITVGSAANPILVFLEEWS 541
Query: 514 TENFE 518
TENFE
Sbjct: 542 TENFE 546
>gi|302780123|ref|XP_002971836.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
gi|300160135|gb|EFJ26753.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
Length = 1178
Score = 877 bits (2266), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/545 (78%), Positives = 461/545 (84%), Gaps = 37/545 (6%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNP 70
DEEEE TQE+AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDES++IEI+PESQHNP
Sbjct: 2 DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSEIEIKPESQHNP 61
Query: 71 GQQSD----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV 120
G+ ++ F +IYLSKPMMTESDGETATLF KAARLRNLTYSAPLY D+ K V
Sbjct: 62 GRNNEYSGETTFKIKFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYADIIKYV 121
Query: 121 IKKGHDGEE--------------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIIN 166
+KG DGEE VPIMLRSSYCTLYQNS K LTELGECPYD+GGYFIIN
Sbjct: 122 TRKGEDGEEDTEQEELPKVFIGKVPIMLRSSYCTLYQNSDKDLTELGECPYDQGGYFIIN 181
Query: 167 GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKG 226
GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEV SMAESQNRP S++FV MLSR AK
Sbjct: 182 GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPASSMFVRMLSRAGAKA 241
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
GSSGQYI ATLPYI+ EIPII++FRALGF AD+DILEHICYDF DT MMELLRPSLEEAF
Sbjct: 242 GSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTAMMELLRPSLEEAF 301
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQNQQ YIGKRG+TVGVTREK IKYAK+ILQKEMLPHVG G++CETKKAY+FG+II
Sbjct: 302 VIQNQQVALDYIGKRGSTVGVTREKRIKYAKDILQKEMLPHVGVGEYCETKKAYFFGYII 361
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG LFR LFRKLT DVR+Y+QKCVDNGK+V
Sbjct: 362 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRQLFRKLTKDVRAYLQKCVDNGKEV 421
Query: 403 NLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWK---- 458
NL +A+KAKTIT GLKYSLATGNWGQ N+ RAGVSQVLN LTYAST ++
Sbjct: 422 NLAYAVKAKTITSGLKYSLATGNWGQANSGNARAGVSQVLNRLTYASTLSHLRRLNSPIG 481
Query: 459 -----LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
LAKPRQLHNS WGMMCPAETPEGQACGLVKNLALM YIT+GSAA PIL FLEEW
Sbjct: 482 REGRLLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMAYITVGSAANPILVFLEEWS 541
Query: 514 TENFE 518
TENFE
Sbjct: 542 TENFE 546
>gi|68300804|gb|AAY89344.1| RNA polymerase II second largest subunit [Petunia x hybrida]
Length = 1203
Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/540 (79%), Positives = 463/540 (85%), Gaps = 35/540 (6%)
Query: 14 EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQ 73
+E TQ++AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDE+ADIEIRPESQHNP +Q
Sbjct: 32 QEITQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDETADIEIRPESQHNPARQ 91
Query: 74 SDFAE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKG 124
SDF + IYLS+PMMTESDGET TLF KAARLRNLTYS+PLYVDV K VIKKG
Sbjct: 92 SDFVDTIYKIKFTQIYLSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVRKEVIKKG 151
Query: 125 HDGEEV--------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEK 170
HD EEV PIMLRSSYC+LY S+K LTELGECPYD+GGYFI+NGSEK
Sbjct: 152 HDYEEVSECQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVNGSEK 211
Query: 171 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSG 230
VLIAQEKMS+NHVYVFKKRQPNKYAYVAEV S+AE Q + PST+FV MLSR++AK GSSG
Sbjct: 212 VLIAQEKMSSNHVYVFKKRQPNKYAYVAEVRSIAEGQTKAPSTMFVRMLSRSNAKVGSSG 271
Query: 231 QYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQN 290
QYI ATLPYI+ EIPIII+FRALGF AD+DIL HICYDF DTQMMELLRPSLEEAF IQN
Sbjct: 272 QYIKATLPYIKNEIPIIIVFRALGFVADKDILAHICYDFADTQMMELLRPSLEEAFVIQN 331
Query: 291 QQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLL 346
QQ YIGKRG+TVG +RE+ IKYAKEILQ+EMLPHVGT ++CETKKAYYFG+IIHRLL
Sbjct: 332 QQVALDYIGKRGSTVGFSRERRIKYAKEILQREMLPHVGTREYCETKKAYYFGYIIHRLL 391
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQF 406
LC LGRR EDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVRSYVQKCVD+GKDVNLQF
Sbjct: 392 LCVLGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDSGKDVNLQF 451
Query: 407 AIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------K 458
AIKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LT+AST ++ K
Sbjct: 452 AIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGK 511
Query: 459 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYIT+GSAA PILEFLEEW TENFE
Sbjct: 512 LAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFE 571
>gi|70794968|gb|AAZ08458.1| RNA polymerase II second largest subunit [Rhododendron
macrophyllum]
Length = 1207
Score = 874 bits (2259), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/541 (80%), Positives = 472/541 (87%), Gaps = 35/541 (6%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ 72
EEE +QE+AW VISAYFEEKGLVRQQLDSFDEF QNTMQEIVDE+ADIEI+PESQHNPG+
Sbjct: 35 EEEISQEDAWTVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDEAADIEIKPESQHNPGR 94
Query: 73 QSDFAE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKK 123
QSDF E IYLSKPMMTESDGETA+LF KAARLRNLTYS+PLYVDVTKRV+KK
Sbjct: 95 QSDFVEMVYRISFGQIYLSKPMMTESDGETASLFPKAARLRNLTYSSPLYVDVTKRVVKK 154
Query: 124 GHDGEEV--------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSE 169
GHD EEV PIMLRSSYC+LYQ S+K LTELGECP+D+GGYFIINGSE
Sbjct: 155 GHDCEEVTETQEFTKVFIGKVPIMLRSSYCSLYQTSEKDLTELGECPFDQGGYFIINGSE 214
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KVLIAQEKMSTNHVYVFK RQPNKYAYV+EV SMAESQNRPPS +FV M+S +SAKGGSS
Sbjct: 215 KVLIAQEKMSTNHVYVFKIRQPNKYAYVSEVRSMAESQNRPPSGMFVRMVSSSSAKGGSS 274
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
GQYI ATLPYIRTEIPI+++FRALGF AD+DILEHICY+F D +MM+LLRPSLEEAF IQ
Sbjct: 275 GQYIRATLPYIRTEIPIVVVFRALGFVADKDILEHICYEFTDNKMMDLLRPSLEEAFVIQ 334
Query: 290 NQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRL 345
NQQ YIGKRG+TVGVT+EK I+YAKEILQ+EMLPHVGTG++CETKKAYYFG+IIHRL
Sbjct: 335 NQQVALDYIGKRGSTVGVTKEKRIRYAKEILQREMLPHVGTGEYCETKKAYYFGYIIHRL 394
Query: 346 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQ 405
LLCALGRR EDDRDHY NKRLDLAGPLLGGLFR LFRKLT DVRSYVQKCVDNGKDVNLQ
Sbjct: 395 LLCALGRRPEDDRDHYANKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQ 454
Query: 406 FAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW-------- 457
FAIKAKTIT GLKYSLATGNWGQ N+AG+RAGVSQVLN LTYAST ++
Sbjct: 455 FAIKAKTITSGLKYSLATGNWGQANSAGSRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 514
Query: 458 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
KLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYIT+GSAA PILEFLEEW TENF
Sbjct: 515 KLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENF 574
Query: 518 E 518
E
Sbjct: 575 E 575
>gi|68300799|gb|AAY89342.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
Length = 1203
Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/540 (79%), Positives = 463/540 (85%), Gaps = 36/540 (6%)
Query: 14 EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQ 73
+E TQ++AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDE+A+IEIRPESQHNP +Q
Sbjct: 33 QEITQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDETANIEIRPESQHNPSRQ 92
Query: 74 SDFAE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKG 124
DF E IYLS+PMMTESDGET TLF KAARLRNLTYS+PLYVDV K VIKKG
Sbjct: 93 PDFVETIYKIKFTQIYLSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVKKEVIKKG 152
Query: 125 HDGEEV--------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEK 170
HD EEV PIMLRSSYC+LY S+K LTELGECPYD+GGYFI+NGSEK
Sbjct: 153 HDYEEVTENQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVNGSEK 212
Query: 171 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSG 230
VLIAQEKMS+NHVYVFKKRQPNKYAYVAEV S+AE QN+ PS++FV MLSR++AKG +SG
Sbjct: 213 VLIAQEKMSSNHVYVFKKRQPNKYAYVAEVRSIAEGQNKAPSSMFVRMLSRSNAKG-ASG 271
Query: 231 QYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQN 290
QYI ATLPYIR EIPII++FRALGF AD+DIL HICYDF DTQMMELLRPSLEEAF IQN
Sbjct: 272 QYIRATLPYIRAEIPIIVVFRALGFVADKDILAHICYDFADTQMMELLRPSLEEAFVIQN 331
Query: 291 QQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLL 346
QQ YIGKRG+TVG TRE+ IKYAKEILQ+EMLPHVGT ++CETKKAYYFG+IIHRLL
Sbjct: 332 QQVALDYIGKRGSTVGFTRERRIKYAKEILQREMLPHVGTREYCETKKAYYFGYIIHRLL 391
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQF 406
LC LGRR EDDRDHYGBKRLDLAGPLLGGLFR LFRKLT DVRSYVQKCVD+GKDVNLQF
Sbjct: 392 LCVLGRRPEDDRDHYGBKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDSGKDVNLQF 451
Query: 407 AIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------K 458
AIKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LT+AST ++ K
Sbjct: 452 AIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGK 511
Query: 459 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYIT+GSAA PILEFLEEW TENFE
Sbjct: 512 LAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFE 571
>gi|242038711|ref|XP_002466750.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
gi|241920604|gb|EER93748.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
Length = 1218
Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/543 (79%), Positives = 459/543 (84%), Gaps = 50/543 (9%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNP 70
D +E Q++AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADIEIRPESQHNP
Sbjct: 60 DLRDEIGQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 119
Query: 71 GQQSDFAE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVI 121
G+Q++FAE IYLSKPMMTE+DGETATLF K+ARLRNLTYSAPLYVDV+ RV+
Sbjct: 120 GRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVM 179
Query: 122 KKGHDGEEV--------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIING 167
KKGHD EEV PIMLRSSYCTLYQ S+K LTELGECPYD+GGYFIING
Sbjct: 180 KKGHDCEEVTETADYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGECPYDQGGYFIING 239
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQEKMSTNHVYVFKKRQPNK+AYVAEV SMAE+QNRP S++FV MLSR AKGG
Sbjct: 240 SEKVLIAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGG 299
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPYIR +IPIII+FRALGF AD+DILEHICYDF DTQMMELLRPSLEEAF
Sbjct: 300 SSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV 359
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRGATVGVTREK IKYAKEILQKEMLPHVG G+FCETKKAYYFG+IIH
Sbjct: 360 IQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIH 419
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLL+CALGRRAEDDRDHYGNKRLDLAGPLLGGLFR CVDNGK+VN
Sbjct: 420 RLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM---------------CVDNGKEVN 464
Query: 404 LQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW------ 457
LQFAIKAKTIT GLKYSLATGNWGQ N AGTRAGVSQVLN LTYAST ++
Sbjct: 465 LQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 524
Query: 458 --KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
KLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYIT+GSAA PILEFLEEWGTE
Sbjct: 525 EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTE 584
Query: 516 NFE 518
NFE
Sbjct: 585 NFE 587
>gi|350539902|ref|NP_001234825.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
gi|68300807|gb|AAY89345.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
Length = 1205
Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/539 (79%), Positives = 459/539 (85%), Gaps = 36/539 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E TQ++AWAVIS+YFEEKGLVRQQLDSFDEF QNTMQEIVDE+ADIEIRPESQHNP +Q
Sbjct: 39 EITQDDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQEIVDETADIEIRPESQHNPSRQP 98
Query: 75 DFAE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGH 125
DF E IYLS+PMMTESDGET TLF KAARLRNLTYS+PLYVDV K VIKKGH
Sbjct: 99 DFVETIYKIKFTQIYLSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVKKEVIKKGH 158
Query: 126 DGEEV--------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKV 171
D EEV PIMLRSSYC+LY S+K LTELGECPYD+GGYFI+NGSEKV
Sbjct: 159 DYEEVTENQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVNGSEKV 218
Query: 172 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ 231
LIAQEKMS+NHVYVFKKRQPNKYAYVAEV S++E QN+ PS +FV MLSR+++KG + GQ
Sbjct: 219 LIAQEKMSSNHVYVFKKRQPNKYAYVAEVRSISEGQNKAPSGMFVRMLSRSNSKG-AYGQ 277
Query: 232 YIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ 291
YI ATLPYIRTEIPII++FRALGF AD+DIL HICYDF DTQMMELLRPSLEEAF IQNQ
Sbjct: 278 YIRATLPYIRTEIPIIVVFRALGFVADKDILAHICYDFADTQMMELLRPSLEEAFVIQNQ 337
Query: 292 Q----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLL 347
Q YIGKRG+TVG TREK IKYAKEILQ+EMLPHVGT ++CETKKAYYFG+IIHRLLL
Sbjct: 338 QVALDYIGKRGSTVGFTREKRIKYAKEILQREMLPHVGTREYCETKKAYYFGYIIHRLLL 397
Query: 348 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA 407
C LGRR EDDRDHY NKRLDLAGPLLGGLFR LFRKLT DVRSYVQKCVD GKDVNLQFA
Sbjct: 398 CVLGRRPEDDRDHYANKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDGGKDVNLQFA 457
Query: 408 IKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KL 459
IKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LT+AST ++ KL
Sbjct: 458 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKL 517
Query: 460 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
AKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYIT+GSAA PILEFLEEW TENFE
Sbjct: 518 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFE 576
>gi|68300802|gb|AAY89343.1| RNA polymerase II second largest subunit [Antirrhinum majus]
Length = 1198
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/537 (78%), Positives = 461/537 (85%), Gaps = 35/537 (6%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
+QE+AW VIS+YFEEKGLVRQQLDSFDEF QNTMQEIVDES++IEIRPESQHNPG SDF
Sbjct: 30 SQEDAWTVISSYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSNIEIRPESQHNPGGNSDF 89
Query: 77 AE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
AE IYLSKPMMTESDGET TLF KAARLRNLTYS+PLYVDVTKRV+KKG D
Sbjct: 90 AEAMYRISFGQIYLSKPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVTKRVVKKGFDC 149
Query: 128 EEV--------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLI 173
EEV PIMLRSSYC+LY +K L +LGECPYD+GGYFI+NGSEKVLI
Sbjct: 150 EEVTETQEFAKVFIGKVPIMLRSSYCSLYHLPEKDLMDLGECPYDQGGYFIVNGSEKVLI 209
Query: 174 AQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI 233
AQEKMSTNHVYVFKKRQPNKY+YVAEV S+AESQN+ PS +FV MLSR+ AK G+SGQYI
Sbjct: 210 AQEKMSTNHVYVFKKRQPNKYSYVAEVRSIAESQNKAPSGMFVRMLSRSGAKRGTSGQYI 269
Query: 234 HATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ- 292
+ATLPYIRTE+PIII+FRALGF AD+DILEHICYDF D++MMELLRP LEEAF IQNQQ
Sbjct: 270 YATLPYIRTEVPIIIIFRALGFVADKDILEHICYDFNDSKMMELLRPFLEEAFVIQNQQV 329
Query: 293 ---YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCA 349
YIGKRG+T+GVTR+K IKYA+EILQ+EMLPHVGT ++CETKKAYYFG+II+RLLLCA
Sbjct: 330 ALDYIGKRGSTIGVTRDKRIKYAREILQREMLPHVGTEEYCETKKAYYFGYIINRLLLCA 389
Query: 350 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIK 409
LGRR EDDRDHY NKRLDLAGPLL GLFR LFRKLT DVRSYVQKCVDNGKDVNLQFAIK
Sbjct: 390 LGRRPEDDRDHYANKRLDLAGPLLAGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIK 449
Query: 410 AKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAK 461
AKTIT GLKYS+ATGNWGQ NAAGTRAGVSQVLN LTYAST ++ KLAK
Sbjct: 450 AKTITSGLKYSIATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 509
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PRQLHNS WGMMCPAETPEGQACGLVKNLALMVYIT+GSAA PILEFL+EW TENFE
Sbjct: 510 PRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLDEWSTENFE 566
>gi|168027816|ref|XP_001766425.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682334|gb|EDQ68753.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1185
Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/537 (79%), Positives = 459/537 (85%), Gaps = 36/537 (6%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS-- 74
TQE+AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDES+DIEIRPESQHNPG+Q+
Sbjct: 16 TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSDIEIRPESQHNPGRQAEI 75
Query: 75 -------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
+F +IYLSKPMMTE+DGETATL+ KAARLRNLTYSAPLYVDVTK V +K DG
Sbjct: 76 GDVTYKINFGQIYLSKPMMTEADGETATLWPKAARLRNLTYSAPLYVDVTKFVTRKTEDG 135
Query: 128 E--------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLI 173
E +VPIMLRS YCTL++NS K LTELGECPYD+GGYFIINGSEKVLI
Sbjct: 136 EEETEQEDLSKVYIGKVPIMLRSRYCTLFENSDKDLTELGECPYDQGGYFIINGSEKVLI 195
Query: 174 AQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI 233
AQEKMSTNHVYVFKKRQPNKY YVAEV SMAE+QNRPPS +FV MLSR AKGGSSGQYI
Sbjct: 196 AQEKMSTNHVYVFKKRQPNKYCYVAEVRSMAENQNRPPSGMFVRMLSRAGAKGGSSGQYI 255
Query: 234 HATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ- 292
ATLPYIRTEIPII++FRALGF AD+DILEHICYDF DT MMELLRPSLEEAF IQNQQ
Sbjct: 256 RATLPYIRTEIPIIVVFRALGFVADKDILEHICYDFSDTAMMELLRPSLEEAFVIQNQQV 315
Query: 293 ---YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCA 349
YIGKRG+TVGVTREK IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHRLLLCA
Sbjct: 316 ALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHRLLLCA 375
Query: 350 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIK 409
+G AEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++NL +A+K
Sbjct: 376 IG-GAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEINLAYAVK 434
Query: 410 AKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAK 461
AKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST ++ KLAK
Sbjct: 435 AKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 494
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PRQLHNS WGMMCPAETPEGQACGLVKNLALM YIT+GSAA PILEFLEEW TENFE
Sbjct: 495 PRQLHNSHWGMMCPAETPEGQACGLVKNLALMAYITVGSAANPILEFLEEWSTENFE 551
>gi|70794982|gb|AAZ08465.1| RNA polymerase II second largest subunit [Spinacia oleracea]
Length = 495
Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/495 (83%), Positives = 431/495 (87%), Gaps = 35/495 (7%)
Query: 37 QQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE---------IYLSKPMMT 87
QQLDSFDEF QNTMQEIVDESADIEIRPESQHNPG QSDFAE IYLSKPMMT
Sbjct: 1 QQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKIKFGQIYLSKPMMT 60
Query: 88 ESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE--------------VPIM 133
ESDGETATLF KAARLRNLTYSAPLYVDVTKRVI+KGHDG+E VPIM
Sbjct: 61 ESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIRKGHDGDELTEAHELPKVFIGKVPIM 120
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
LRSSYCTLYQNS+K LTELGECPYD+GG FIINGSEKVLIAQEKMSTNHVYVFKKRQPNK
Sbjct: 121 LRSSYCTLYQNSEKDLTELGECPYDQGGCFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 180
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
+AYVAEV SMAESQNRPPST+FV MLSR AKGGSSGQYI TLPYI+++IPIII+FRAL
Sbjct: 181 FAYVAEVRSMAESQNRPPSTMFVRMLSRAGAKGGSSGQYIRCTLPYIKSDIPIIIVFRAL 240
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMI 309
GF AD+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRGATVGVTREK I
Sbjct: 241 GFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRI 300
Query: 310 KYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLA 369
KYA+EILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCA+GRR EDDRDHYGNKRLDLA
Sbjct: 301 KYAREILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLA 360
Query: 370 GPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQG 429
GPLLGGLFR LFRKLT DVR YVQKCVD+GKD+NL FAIKAKTIT GLKYSLATGNWGQ
Sbjct: 361 GPLLGGLFRMLFRKLTRDVRGYVQKCVDSGKDLNLSFAIKAKTITSGLKYSLATGNWGQA 420
Query: 430 NAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEG 481
NAAGTRAGVSQVLN LTYAST ++ KLAKPRQLHNSQWGMMCPAETPEG
Sbjct: 421 NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEG 480
Query: 482 QACGLVKNLALMVYI 496
QACGLVKNLALMVYI
Sbjct: 481 QACGLVKNLALMVYI 495
>gi|68300810|gb|AAY89346.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
Length = 1087
Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/460 (86%), Positives = 411/460 (89%), Gaps = 26/460 (5%)
Query: 85 MMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV-------------- 130
MMTESDGETATLF KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV
Sbjct: 1 MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKV 60
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
PIMLRSSYCTLYQNS+K LTELGECP D+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ
Sbjct: 61 PIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 120
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILF 250
PNKYA+VAEV SMAESQNRPPST+FV MLSRTSAKGGSSGQYI ATLPYIRTEIPIII+F
Sbjct: 121 PNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVF 180
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTRE 306
RALGF AD+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRGATVGVTRE
Sbjct: 181 RALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRE 240
Query: 307 KMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRL 366
K IKYAKEILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCALGRRAEDDRDHYGNKRL
Sbjct: 241 KRIKYAKEILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRL 300
Query: 367 DLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNW 426
DLAGPLLGG FR LFRKLT DVR+YVQK VDNGKDVNLQFAIKAKTIT GLKYSLATGNW
Sbjct: 301 DLAGPLLGGXFRMLFRKLTRDVRAYVQKXVDNGKDVNLQFAIKAKTITSGLKYSLATGNW 360
Query: 427 GQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAET 478
GQ NAAGTRAGVSQVLN LTYAST ++ KLAKPRQLHNSQWGMMCPAET
Sbjct: 361 GQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 420
Query: 479 PEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PEGQACGLVKNLALMVYIT+GSAAYPILEFLEEWGTENFE
Sbjct: 421 PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 460
>gi|68131844|gb|AAY85200.1| RNA polymerase II second largest subunit [Coriaria sarmentosa]
Length = 952
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/453 (86%), Positives = 404/453 (89%), Gaps = 26/453 (5%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------------PIMLRSS 137
ETATLF KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV PIMLRSS
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YCTL+QNS+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+V
Sbjct: 61 YCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AEV SMAESQNRPPST+FV MLSR SAKGGSSGQYI ATLPYIRTEIPIII+FRALGF A
Sbjct: 121 AEVRSMAESQNRPPSTMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRGATVGVTREK IKYAK
Sbjct: 181 DKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAK 240
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EILQKEMLPHVG G+FCETKKAYYFG+IIHRLLLCALGRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG 433
GGLFR LFRKLT DVR YVQKCVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAG
Sbjct: 301 GGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360
Query: 434 TRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACG 485
TRAGVSQVLN LTYAST ++ KLAKPRQLHNSQWGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 420
Query: 486 LVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LVKNLALMVYIT+GSAAYPILEFLEEWGTENFE
Sbjct: 421 LVKNLALMVYITVGSAAYPILEFLEEWGTENFE 453
>gi|68131834|gb|AAY85195.1| RNA polymerase II second largest subunit [Callistemon subulatus]
Length = 952
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/453 (86%), Positives = 404/453 (89%), Gaps = 26/453 (5%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE--------------VPIMLRSS 137
ETATLF KAARLRNLTYSAPLYVDV+ RVIKKGHDGEE VPIMLRSS
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVSMRVIKKGHDGEELTEPQDLQKVFIGKVPIMLRSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YCTLYQNS+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AEV SMAESQNRPPST+FV MLSRTSAKGGSSGQYI ATLPYIRTEIPIII+FRALGF A
Sbjct: 121 AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRGATVGVTREK IKYAK
Sbjct: 181 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAK 240
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EILQKEMLPHVG ++CETKKAYYFG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVEEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 300
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG 433
GGLFR LFRKLT DVR+YVQKCVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAG
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360
Query: 434 TRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACG 485
TRAGVSQVLN LTYAST + KLAKPRQLHNSQWGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLPHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 420
Query: 486 LVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LVKNLALMVYIT+GSAAYPILEFLEEWGTENFE
Sbjct: 421 LVKNLALMVYITVGSAAYPILEFLEEWGTENFE 453
>gi|70794978|gb|AAZ08463.1| RNA polymerase II second largest subunit [Liquidambar acalycina]
Length = 453
Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/453 (86%), Positives = 405/453 (89%), Gaps = 26/453 (5%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------------PIMLRSS 137
ETATLF KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV PIMLRSS
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YCTL+QNS+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61 YCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
EV SMAESQNRPPS++FV MLSRTSAKGGSSGQYI ATLPYIRTEIPIII+FRALGF A
Sbjct: 121 GEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRGATVGVT+EK IKYAK
Sbjct: 181 DKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAK 240
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCALGRRAEDDR HYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRAHYGNKRLDLAGPLL 300
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG 433
GGLFR LFRKLT DVR+YVQKCVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAG
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360
Query: 434 TRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACG 485
TRAGVSQVLN LTYAST ++ KLAKPRQLHNSQWGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 420
Query: 486 LVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LVKNLALMVYIT+GSAAYPILEFLEEWGTENFE
Sbjct: 421 LVKNLALMVYITVGSAAYPILEFLEEWGTENFE 453
>gi|70794970|gb|AAZ08459.1| RNA polymerase II second largest subunit [Astilbe sp. Yoshikawa
s.n.]
Length = 951
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/453 (85%), Positives = 403/453 (88%), Gaps = 26/453 (5%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------------PIMLRSS 137
ETATLF KAARLRNLTYSAPLYVDV+KRVIKKGHDGEEV PIMLRSS
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YCTL+QNS+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61 YCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AEV SMAESQNRPPST+FV ML+RTSAKGGSSGQYI ATLPYIR +IPIII+FRALGF A
Sbjct: 121 AEVRSMAESQNRPPSTMFVRMLARTSAKGGSSGQYIRATLPYIRVDIPIIIVFRALGFVA 180
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRG+TVGVTREK IKYA+
Sbjct: 181 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAR 240
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EILQKEMLPHVG ++CETKKAYYFG+IIHRLLL ALGRRAEDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGMAEYCETKKAYYFGYIIHRLLLVALGRRAEDDRDHYGNKRLDLAGPLL 300
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG 433
GGLFR LFRKLT DVR YVQKCVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAG
Sbjct: 301 GGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360
Query: 434 TRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACG 485
TRAGVSQVLN LTYAST ++ KLAKPRQLHNSQWGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 420
Query: 486 LVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LVKNLALMVYIT+GSAAYPILEFLEEWGTENFE
Sbjct: 421 LVKNLALMVYITVGSAAYPILEFLEEWGTENFE 453
>gi|68131916|gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis piasezkii]
Length = 951
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/453 (85%), Positives = 402/453 (88%), Gaps = 26/453 (5%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------------PIMLRSS 137
ETATLF KAARLRNLTYSAPLYVDVTKR+IKKGHD EEV PIMLRSS
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDLEEVTETQEFTKVFIGKVPIMLRSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YCT+YQNS+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61 YCTVYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AEV SMAESQNRPPS++FV MLSRTSAKGGSSGQYI ATLPYIRTEIPIII+FRALGF A
Sbjct: 121 AEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRG+TVGVTREK IKYAK
Sbjct: 181 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAK 240
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCALGRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG 433
GGLFR LFRKLT DVR+YVQKCVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAG
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360
Query: 434 TRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACG 485
TRAGVSQVLN LTYAST ++ KLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420
Query: 486 LVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LVKNLALMVYIT+GSAA PILEFLEEW TENFE
Sbjct: 421 LVKNLALMVYITVGSAANPILEFLEEWSTENFE 453
>gi|68131860|gb|AAY85208.1| RNA polymerase II second largest subunit [Euptelea polyandra]
Length = 874
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/453 (84%), Positives = 400/453 (88%), Gaps = 26/453 (5%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------------PIMLRSS 137
ETATLF KAARLRNLTYSAPLYVDVTKR+IKKGHD EEV PIMLRSS
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQEFTKVFIGKVPIMLRSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YCTLYQNS+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
EV SMAESQNRPPS++FV MLSR SAKGGSSGQYI ATLPYIRTEIPIII+FRALGF A
Sbjct: 121 GEVRSMAESQNRPPSSMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRG+TVGVTREK IKYAK
Sbjct: 181 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAK 240
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCALGRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG 433
GGLFR LFRKLT DVR+YVQKCVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAG
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360
Query: 434 TRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACG 485
TRAGVSQVLN LTYAST ++ KLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420
Query: 486 LVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LVKNLALMVYIT+GSAA PILEFLEEW TENFE
Sbjct: 421 LVKNLALMVYITVGSAANPILEFLEEWSTENFE 453
>gi|68300794|gb|AAY89340.1| RNA polymerase II second largest subunit [Berberidopsis beckleri]
Length = 873
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/453 (84%), Positives = 401/453 (88%), Gaps = 26/453 (5%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------------PIMLRSS 137
ETATLF KAARLRNLTYSAPLYVDVTKRVIKKGHD EEV PIMLRSS
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQDFTKVFIGKVPIMLRSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YCT+YQNS+K LTELGECP+D+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61 YCTVYQNSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
EV SMAESQNRPPS++FV MLSRTSAKGGSSGQYI ATLPYIRTEIPIII+FRALGF A
Sbjct: 121 GEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRG+TVGVTREK IKYAK
Sbjct: 181 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAK 240
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCALGRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG 433
GGLFR LFRKLT DVR+YVQKCVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAG
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360
Query: 434 TRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACG 485
TRAGVSQVLN LTYAST ++ KLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420
Query: 486 LVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LVKNLALMVYIT+GSAA PILEFLEEW TENFE
Sbjct: 421 LVKNLALMVYITVGSAANPILEFLEEWSTENFE 453
>gi|68131876|gb|AAY85216.1| RNA polymerase II second largest subunit [Hibbertia scandens]
Length = 873
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/453 (84%), Positives = 402/453 (88%), Gaps = 26/453 (5%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------------PIMLRSS 137
ETATLF KAARLRNLTYSAPLYVDVTKR+IKKGHD EEV PIMLRSS
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQDFAKVFIGKVPIMLRSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YCT+YQNS+K LTELGECP+D+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61 YCTVYQNSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AEV SMAESQNRPPS++FV MLSRTSAKGGSSGQY+ ATLPYIRTEIPIII+FRALGF A
Sbjct: 121 AEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYVRATLPYIRTEIPIIIVFRALGFVA 180
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRG+TVGVTREK IKYAK
Sbjct: 181 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAK 240
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCALGRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG 433
GGLFR LFRKLT DVR+YVQKCVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAG
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360
Query: 434 TRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACG 485
TRAGVSQVLN LTY+ST ++ KLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420
Query: 486 LVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LVKNLALMVYIT+GSAA PILEFLEEW TENFE
Sbjct: 421 LVKNLALMVYITVGSAANPILEFLEEWSTENFE 453
>gi|68300792|gb|AAY89339.1| RNA polymerase II second largest subunit [Berberidopsis corallina]
Length = 853
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/453 (84%), Positives = 401/453 (88%), Gaps = 26/453 (5%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------------PIMLRSS 137
ETATLF KAARLRNLTYSAPLYVDVTKRVIKKGHD EEV PIMLRSS
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQDFTKVFIGKVPIMLRSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YCT+YQNS+K LTELGECP+D+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61 YCTVYQNSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
EV SMAESQNRPPS++FV MLSRTSAKGGSSGQYI ATLPYIRTEIPIII+FRALGF A
Sbjct: 121 GEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRG+TVGVTREK IKYAK
Sbjct: 181 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAK 240
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCALGRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG 433
GGLFR LFRKLT DVR+YVQKCVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAG
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360
Query: 434 TRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACG 485
TRAGVSQVLN LTYAST ++ KLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420
Query: 486 LVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LVKNLALMVYIT+GSAA PILEFLEEW TENFE
Sbjct: 421 LVKNLALMVYITVGSAANPILEFLEEWSTENFE 453
>gi|68131850|gb|AAY85203.1| RNA polymerase II second largest subunit [Dicentra formosa]
Length = 873
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/453 (84%), Positives = 400/453 (88%), Gaps = 26/453 (5%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------------PIMLRSS 137
ETATLF KAARLRNLTYSAPLYVDVTKR+IKKGHD EEV PIMLRSS
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQEFKKVFIGKVPIMLRSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YCTLYQNS+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AEV SMAESQNRPPS++FV MLSR SAKGGSSGQYI ATLPYIRTEIPIII+FRALGF A
Sbjct: 121 AEVRSMAESQNRPPSSMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRG+TVGVT+EK IKYA+
Sbjct: 181 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAR 240
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCALGRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG 433
GGLFR LFRKLT DVR YVQKCVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAG
Sbjct: 301 GGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360
Query: 434 TRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACG 485
TRAGVSQVLN LTYAST ++ KLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420
Query: 486 LVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LVKNLALMVYIT+GSAA PILEFLEEW TENFE
Sbjct: 421 LVKNLALMVYITVGSAANPILEFLEEWSTENFE 453
>gi|68131878|gb|AAY85217.1| RNA polymerase II second largest subunit [Muehlenbeckia platyclada]
Length = 875
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/453 (84%), Positives = 399/453 (88%), Gaps = 26/453 (5%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------------PIMLRSS 137
ETATLF KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV PIMLRSS
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YCTLY NS+K LTELGECP D+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61 YCTLYHNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AEV SMAE+QNRPPST+FV MLSR AKGGSSGQYI ATLPYIRTEIPIII+FRALGF A
Sbjct: 121 AEVRSMAENQNRPPSTMFVRMLSRAGAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRGATVGVT+EK IKYA+
Sbjct: 181 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAR 240
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EILQKEMLPHVG G++CETKKAYYFG+I+HRLLLCALGRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIVHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG 433
GGLFR LFRKLT DVR YVQKCVD GKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAG
Sbjct: 301 GGLFRMLFRKLTRDVRGYVQKCVDQGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360
Query: 434 TRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACG 485
TRAGVSQVLN LTYAST ++ KLAKPRQLHNSQWGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPTGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 420
Query: 486 LVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LVKNLALMVYIT+GSAAYPILEFLEEW TENFE
Sbjct: 421 LVKNLALMVYITVGSAAYPILEFLEEWSTENFE 453
>gi|68131836|gb|AAY85196.1| RNA polymerase II second largest subunit [Chimonanthus praecox]
Length = 906
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/453 (83%), Positives = 403/453 (88%), Gaps = 26/453 (5%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------------PIMLRSS 137
ETATLF KAARLRNLTYSAPLYVDVTKR+IKKGHD EEV PIMLRSS
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQEFTKVFIGKVPIMLRSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YCT+YQNS+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61 YCTVYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AEV SMAE+QNRPPS++FV MLSR S+KGGSSGQYI ATLPYIRTEIPIII+FRALGF A
Sbjct: 121 AEVRSMAENQNRPPSSMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRG+TVGVT+EK IKYAK
Sbjct: 181 DKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAK 240
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EILQKEMLPHVGTG++CETKKAYYFG+IIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGTGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLL 300
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG 433
GGLFR LFRKLT DVR+YVQKCVDNGKDVNLQFAIKAKT+T GLKYSLATGNWGQ NAAG
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTVTSGLKYSLATGNWGQANAAG 360
Query: 434 TRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACG 485
TRAGVSQVLN LT+AST ++ KLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420
Query: 486 LVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LVKNLALMVYIT+GSAA+PILEFLEEW TENFE
Sbjct: 421 LVKNLALMVYITVGSAAHPILEFLEEWSTENFE 453
>gi|68131914|gb|AAY85235.1| RNA polymerase II second largest subunit [Tetracentron sinense]
Length = 951
Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/453 (84%), Positives = 399/453 (88%), Gaps = 26/453 (5%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------------PIMLRSS 137
ETATLF KAARLRNLTYSAPLYVDVTKR+IKKGHD EEV PIMLRSS
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQEFTKVFIGKVPIMLRSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YCT+YQNS+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61 YCTVYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AEV SMAESQNRPPS +FV MLSR SAKGGSSGQYI ATLPYIRTEIPIII+FRALGF A
Sbjct: 121 AEVRSMAESQNRPPSGMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRG+TVGVTREK IKYAK
Sbjct: 181 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAK 240
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLL 300
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG 433
GGLFR LFRKLT DVR YVQKCVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAG
Sbjct: 301 GGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360
Query: 434 TRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACG 485
TRAGVSQVLN LTYAST ++ KLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420
Query: 486 LVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LVKNLALMVYIT+GSAA PILEFLEEW TENFE
Sbjct: 421 LVKNLALMVYITVGSAANPILEFLEEWSTENFE 453
>gi|68131824|gb|AAY85190.1| RNA polymerase II second largest subunit [Aextoxicon punctatum]
Length = 873
Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/453 (84%), Positives = 400/453 (88%), Gaps = 26/453 (5%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------------PIMLRSS 137
ETATLF KAARLRNLTYSAPLYVDVTKRVIKKGHD EEV PIMLRSS
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQDFTKVFIGKVPIMLRSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YCT+YQNS+K LTELGECP+D+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61 YCTVYQNSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AEV SMAESQNRPPS++FV MLSRTSAKGGSSGQYI ATLPYIRTEIPIII+FRALGF A
Sbjct: 121 AEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D+DILEHICYDF DTQMMELLRPSLEEAF IQN Q YIGKRG+TVGVTREK IKYAK
Sbjct: 181 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNHQVALDYIGKRGSTVGVTREKRIKYAK 240
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCALGRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG 433
GGLFR LFRKLT DVR+YVQKCVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAG
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360
Query: 434 TRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACG 485
TRAGVSQVLN LTYAST ++ KLAKPRQLHNS W MMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWXMMCPAETPEGQACG 420
Query: 486 LVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LVKNLALMVYIT+GSAA PILEFLEEW TENFE
Sbjct: 421 LVKNLALMVYITVGSAANPILEFLEEWSTENFE 453
>gi|68131856|gb|AAY85206.1| RNA polymerase II second largest subunit [Embothrium coccineum]
Length = 706
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/453 (84%), Positives = 400/453 (88%), Gaps = 26/453 (5%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------------PIMLRSS 137
ETATLF KAARLRNLTYSAPLYVDVTKRVIKKGHD EEV PIMLRSS
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQDFAKVFIGKVPIMLRSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YCT+YQNS+K LTELGECP+D+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN+YAYV
Sbjct: 61 YCTVYQNSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNRYAYV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
EV SMAESQNRPPS++FV MLSRTSAKGGSSGQYI ATLPYIRTEIPIII+FRALGF A
Sbjct: 121 GEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D+DILEHICYDF DTQMM LLRPSLEEAF IQNQQ YIGKRG+TVGVTREK IKYAK
Sbjct: 181 DKDILEHICYDFSDTQMMGLLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAK 240
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 300
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG 433
GGLFR LFRKLT DVR YVQKCVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAG
Sbjct: 301 GGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360
Query: 434 TRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACG 485
TRAGVSQVLN LTYAST ++ KLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420
Query: 486 LVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LVKNLALMVYIT+GSAA PILEFLEEW TENFE
Sbjct: 421 LVKNLALMVYITVGSAANPILEFLEEWSTENFE 453
>gi|70794972|gb|AAZ08460.1| RNA polymerase II second largest subunit [Eschscholzia californica]
Length = 951
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/453 (84%), Positives = 401/453 (88%), Gaps = 26/453 (5%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------------PIMLRSS 137
E+ATLF KAARLRNLTYSAPLYVDVTKR+IKKGHD EEV PIMLRSS
Sbjct: 1 ESATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVAETQDFTKVFIGRVPIMLRSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YCTLYQNS+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AEV SMAESQNRPPS++FV MLSR SAKGGSSGQYI ATLPYIRTEIPIII+FRALGF A
Sbjct: 121 AEVRSMAESQNRPPSSMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRG+TVGVTREK IKYA+
Sbjct: 181 DKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAR 240
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLL 300
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG 433
GGLFR LFRKLT DVR YVQKCVDNGK+VNLQFAIKAKTIT GLKYSLATGNWGQ NAAG
Sbjct: 301 GGLFRMLFRKLTRDVRGYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360
Query: 434 TRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACG 485
TRAGVSQVLN LTYAST ++ KLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420
Query: 486 LVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LVKNLALMVYIT+GSAA+PILEFLEEW TENFE
Sbjct: 421 LVKNLALMVYITVGSAAHPILEFLEEWSTENFE 453
>gi|68131890|gb|AAY85223.1| RNA polymerase II second largest subunit [Nelumbo nucifera]
Length = 865
Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/445 (85%), Positives = 396/445 (88%), Gaps = 26/445 (5%)
Query: 100 AARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------------PIMLRSSYCTLYQNS 145
AARLRNLTYSAPLYVDVTKRVIKKGHD EEV PIMLRSSYCTLYQNS
Sbjct: 1 AARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQEFAKVFIGKVPIMLRSSYCTLYQNS 60
Query: 146 QKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAE 205
+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEV SMAE
Sbjct: 61 EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE 120
Query: 206 SQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHI 265
SQNRPPS++FV MLSRTSAKGGSSGQYI ATLPYIRTEIPIII+FRALGF AD+DILEHI
Sbjct: 121 SQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI 180
Query: 266 CYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEML 321
CYDF DTQMMELLRPSLEEAF IQNQQ YIGKRG+TVGVTREK IKYAKEILQKEML
Sbjct: 181 CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEML 240
Query: 322 PHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLF 381
PHVG G++CETKKAYYFG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LF
Sbjct: 241 PHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 300
Query: 382 RKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQV 441
RKLT DVR+YVQKCVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQV
Sbjct: 301 RKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV 360
Query: 442 LNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 493
LN LTYAST ++ KLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALM
Sbjct: 361 LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALM 420
Query: 494 VYITIGSAAYPILEFLEEWGTENFE 518
VYIT+GSAA PILEFLEEW TENFE
Sbjct: 421 VYITVGSAANPILEFLEEWSTENFE 445
>gi|68131866|gb|AAY85211.1| RNA polymerase II second largest subunit [Gunnera chilensis]
Length = 453
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/453 (83%), Positives = 400/453 (88%), Gaps = 26/453 (5%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE--------------VPIMLRSS 137
ETATLF KAARLRNLTYSAPLYVDVTKRVIK+GHD EE VPIML+SS
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKRGHDCEELTETQDFTKVFIGKVPIMLKSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YCT++QN++K LTELGECP D+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61 YCTVHQNTEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AEV SMAESQNRPPS++FV MLSR SAKGG+SGQYI ATLPYIRTEIPIII+FRALGF A
Sbjct: 121 AEVRSMAESQNRPPSSMFVRMLSRASAKGGASGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D+DILEHICY+F DTQMMELLRPSLEEAF IQNQQ YIGKRG+TVGVT+EK IKYAK
Sbjct: 181 DKDILEHICYEFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAK 240
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLL 300
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG 433
GGLFR LFRKLT DVR+YVQKCVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAG
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360
Query: 434 TRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACG 485
TRAGVSQVLN LTYAST ++ KLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420
Query: 486 LVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LVKNLALMVYIT+GSAA PILEFLEEW TENFE
Sbjct: 421 LVKNLALMVYITVGSAANPILEFLEEWSTENFE 453
>gi|70794974|gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriodendron tulipifera]
Length = 942
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/445 (84%), Positives = 392/445 (88%), Gaps = 26/445 (5%)
Query: 100 AARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------------PIMLRSSYCTLYQNS 145
AARLRNLTYSAPLYVDVTKRVIKKGHD EEV PIMLRSSYCTLYQNS
Sbjct: 1 AARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS 60
Query: 146 QKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAE 205
+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEV SMAE
Sbjct: 61 EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE 120
Query: 206 SQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHI 265
SQNRPPS++FV MLSR SAKGGSSGQYI ATLPYIRTEIPIII+FRALGF AD+DILEHI
Sbjct: 121 SQNRPPSSMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI 180
Query: 266 CYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEML 321
CYDF DTQMMELLRPSLEEAF IQNQQ YIGKRG TVGVT+EK IKYAKEILQKEML
Sbjct: 181 CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGQTVGVTKEKRIKYAKEILQKEML 240
Query: 322 PHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLF 381
PHVG G++CETKKAYYFG+IIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFR LF
Sbjct: 241 PHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLF 300
Query: 382 RKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQV 441
RKLT DVR YVQKCVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQV
Sbjct: 301 RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV 360
Query: 442 LNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 493
LN LT+AST ++ KLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALM
Sbjct: 361 LNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALM 420
Query: 494 VYITIGSAAYPILEFLEEWGTENFE 518
VYIT+GSAA PILEFLEEW TENFE
Sbjct: 421 VYITVGSAANPILEFLEEWSTENFE 445
>gi|68131852|gb|AAY85204.1| RNA polymerase II second largest subunit [Dillenia suffruticosa]
Length = 868
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/453 (83%), Positives = 395/453 (87%), Gaps = 31/453 (6%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------------PIMLRSS 137
ETATLF KAARLRNLTYSAPLYVDVTKR+IKKGHD EEV PIMLRSS
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQDFAKVFIGKVPIMLRSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YCTLYQNS+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+V
Sbjct: 61 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AEV SMAESQNRPPS++FV MLSRTSAKG YI ATLPYIRTEIPIII+FRALGF A
Sbjct: 121 AEVRSMAESQNRPPSSMFVRMLSRTSAKG-----YIRATLPYIRTEIPIIIVFRALGFVA 175
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRG+TVGVTREK IKYAK
Sbjct: 176 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAK 235
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCALGRR EDDRDHYGNKRLDLAGPLL
Sbjct: 236 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 295
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG 433
GGLFR LFRKLT DVR YVQKCVDNGKDVNLQFAIKAK IT GLKYSLATGNWGQ NAAG
Sbjct: 296 GGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKPITSGLKYSLATGNWGQANAAG 355
Query: 434 TRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACG 485
TRAGVSQVLN LTY+ST ++ KLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 356 TRAGVSQVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 415
Query: 486 LVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LVKNLALMVYIT+GSAA PILEFLEEW TENFE
Sbjct: 416 LVKNLALMVYITVGSAANPILEFLEEWSTENFE 448
>gi|68131842|gb|AAY85199.1| RNA polymerase II second largest subunit [Cissus tuberosa]
Length = 951
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/453 (82%), Positives = 394/453 (86%), Gaps = 26/453 (5%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------------PIMLRSS 137
ETATLF KAARLRNLTYSAPLYV+VTKR+I+KGHD EEV PIMLRSS
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVNVTKRIIRKGHDLEEVTETQEFTKVFIGKVPIMLRSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YCT+Y NS+K LTELGECPYD+GGYFIINGSEKVLIAQEKMS NHVYVFKKRQPNKYAYV
Sbjct: 61 YCTVYHNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSDNHVYVFKKRQPNKYAYV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AEV SMAESQNRPPS++FV MLSRTSAKGGSSGQYI ATLPYIRTEIPIII+FRALGF A
Sbjct: 121 AEVRSMAESQNRPPSSMFVQMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D+DILEH CYDF TQMMEL PSLEEAF IQNQQ YIGKRG+TVGVTREK IKYAK
Sbjct: 181 DKDILEHTCYDFSGTQMMELPHPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAK 240
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EI QKEMLPHVG G++CETKKAYYFG+IIH+LLLCA GRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EIFQKEMLPHVGVGEYCETKKAYYFGYIIHQLLLCAFGRRPEDDRDHYGNKRLDLAGPLL 300
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG 433
GGLFR LFRKLT DVR+YVQKCVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAG
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360
Query: 434 TRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACG 485
TRAGVSQVLN LTYAST ++ KLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420
Query: 486 LVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LVKNLALMVYIT+GSAA PILEFLEEW TENFE
Sbjct: 421 LVKNLALMVYITVGSAANPILEFLEEWSTENFE 453
>gi|68131892|gb|AAY85224.1| RNA polymerase II second largest subunit [Nepenthes maxima]
Length = 667
Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/454 (85%), Positives = 400/454 (88%), Gaps = 27/454 (5%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------------PIMLRSS 137
ETATLF KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV PIMLRSS
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVSEAQDFTKVFIGKVPIMLRSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YCTLYQNS+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSG-QYIHATLPYIRTEIPIIILFRALGFT 256
AEV SMAE+QNRPPST+FV MLSR AKGG S QYI ATLPYIRTEIPIII+FRALGF
Sbjct: 121 AEVRSMAENQNRPPSTMFVRMLSRAGAKGGGSSGQYIKATLPYIRTEIPIIIIFRALGFV 180
Query: 257 ADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYA 312
AD+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRGATVGVTREK IKYA
Sbjct: 181 ADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYA 240
Query: 313 KEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL 372
KEILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCALGRR EDDRDHYGNKRLDLAGPL
Sbjct: 241 KEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPL 300
Query: 373 LGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAA 432
LGGLFR LFRKLT DVR+YVQKCVD GKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAA
Sbjct: 301 LGGLFRMLFRKLTRDVRAYVQKCVDQGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAA 360
Query: 433 GTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQAC 484
GTRAGVSQVLN LTYAST ++ KLAKPRQLHNSQWGMMCPAETPEGQAC
Sbjct: 361 GTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQAC 420
Query: 485 GLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GLVKNLALMVYIT+GSAAYPILEFLEEW TENFE
Sbjct: 421 GLVKNLALMVYITVGSAAYPILEFLEEWSTENFE 454
>gi|70794980|gb|AAZ08464.1| RNA polymerase II second largest subunit [Nymphaea colorata]
Length = 431
Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/431 (84%), Positives = 382/431 (88%), Gaps = 26/431 (6%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE--------------VPIMLRSS 137
ETATLF KAARLRNLTYSAPLYVDVTKRVIKKGHD EE VPIMLRSS
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDSEELVEKQDFTKVFIGKVPIMLRSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YCTLYQNS+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AEV SMAESQNRPPS++FV MLSRTSAKGGSSGQYI ATLPYIRTEIPIII+FRALGF A
Sbjct: 121 AEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D+DILEHICYDF DTQMME+LRPSLEEAF IQNQQ YIGKRG+TVGVT+EK IKYAK
Sbjct: 181 DKDILEHICYDFSDTQMMEMLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAK 240
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCALGRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG 433
GGLFR LFRKLT DV++YVQKCVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAG
Sbjct: 301 GGLFRMLFRKLTRDVKTYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360
Query: 434 TRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACG 485
TRAGVSQVLN LTYAST ++ KLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420
Query: 486 LVKNLALMVYI 496
LVKNLALMVYI
Sbjct: 421 LVKNLALMVYI 431
>gi|70794976|gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis]
Length = 923
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/425 (84%), Positives = 374/425 (88%), Gaps = 26/425 (6%)
Query: 120 VIKKGHDGEEV--------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFII 165
+IKKGHD EEV PIMLRSSYCTL+QNS+K LTELGECPYD+GGYFII
Sbjct: 1 IIKKGHDCEEVTETQEFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFII 60
Query: 166 NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAK 225
NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEV SMAESQNRPPS++FV MLSR SAK
Sbjct: 61 NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRASAK 120
Query: 226 GGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA 285
GGSSGQYI ATLPYIRTEIPIII+FRALGF AD+DILEHICYDF DTQMMELLRPSLEEA
Sbjct: 121 GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFLDTQMMELLRPSLEEA 180
Query: 286 FFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHI 341
F IQNQQ YIGKRG+TVGVTREK IKYAKEILQKEMLPHVG G++CETKKAYYFG+I
Sbjct: 181 FVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI 240
Query: 342 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD 401
IHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR+YVQKCVDNGK+
Sbjct: 241 IHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKE 300
Query: 402 VNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW---- 457
VNLQFAIKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++
Sbjct: 301 VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 360
Query: 458 ----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYIT+GSAA PILEFLEEW
Sbjct: 361 GREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWS 420
Query: 514 TENFE 518
TENFE
Sbjct: 421 TENFE 425
>gi|70794962|gb|AAZ08455.1| RNA polymerase II second largest subunit [Camellia japonica]
Length = 417
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/417 (85%), Positives = 369/417 (88%), Gaps = 26/417 (6%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------------PIMLRSS 137
ETATLF KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV PIMLRSS
Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YCTLYQNS+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
EV SMAESQNRPPS++FV MLSRTSAKGGSSGQYI ATLPYIRTEIPIII+FRALGF A
Sbjct: 121 GEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRGA+VGVT+EK IKYAK
Sbjct: 181 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGASVGVTKEKRIKYAK 240
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EILQKEMLPHVG G++CETKKAYYFG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 300
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG 433
GGLFR LFRKLT DVR YVQKCVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAG
Sbjct: 301 GGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360
Query: 434 TRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQ 482
TRAGVSQVLN LTYAST ++ KLAKPRQLHNSQWGMMCPAETPEGQ
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQ 417
>gi|70794964|gb|AAZ08456.1| RNA polymerase II second largest subunit [Camellia japonica]
Length = 431
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/431 (81%), Positives = 376/431 (87%), Gaps = 26/431 (6%)
Query: 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------------PIMLRSS 137
ETA+LF KAARLRNLTYS+PLYVDVTKRV+K+GHD EEV PIMLRSS
Sbjct: 1 ETASLFPKAARLRNLTYSSPLYVDVTKRVVKRGHDCEEVTETQEFTKVFIGKVPIMLRSS 60
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YC LYQ S+K LTELGECP+D+GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+V
Sbjct: 61 YCCLYQTSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFV 120
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AEV SMAESQNRPPS +FV MLS TSAKGGSSGQYI ATLPYIRTEIPI+++FRALGF A
Sbjct: 121 AEVRSMAESQNRPPSGMFVRMLSTTSAKGGSSGQYIRATLPYIRTEIPIVVVFRALGFVA 180
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D+DILEHICY+F D QMM+LLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K I+YAK
Sbjct: 181 DKDILEHICYEFSDIQMMDLLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIRYAK 240
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EILQ+EMLPHVGTG++CETKKAYYFG+IIHRLLLC LGRR EDDRDHY NKRLDLAGPLL
Sbjct: 241 EILQREMLPHVGTGEYCETKKAYYFGYIIHRLLLCVLGRRPEDDRDHYANKRLDLAGPLL 300
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG 433
GGLFR LFRKLT DVRSYVQKCVDNGKDVNLQFAIKAK+IT GLKYSLATGNWGQ NAAG
Sbjct: 301 GGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKSITSGLKYSLATGNWGQANAAG 360
Query: 434 TRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACG 485
TRAGVSQVLN LT+AST ++ KLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420
Query: 486 LVKNLALMVYI 496
LVKNLALMVYI
Sbjct: 421 LVKNLALMVYI 431
>gi|384245445|gb|EIE18939.1| RNA polymerase II second largest subunit [Coccomyxa subellipsoidea
C-169]
Length = 1170
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/549 (63%), Positives = 416/549 (75%), Gaps = 39/549 (7%)
Query: 4 EEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR 63
EEE L +D E TQE+AWAVISA+FE KGLVRQQLDSF+EF + MQEIVDE + ++
Sbjct: 7 EEEDLPDDAE--ITQEDAWAVISAFFEAKGLVRQQLDSFNEFINSNMQEIVDEYGTLLVK 64
Query: 64 PESQHNPGQ--------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVD 115
PESQHNPG + +F +IYLSKP MTE+DGET LF K ARLRNLTY+APLY+D
Sbjct: 65 PESQHNPGMAELEEKEYKVEFGQIYLSKPTMTEADGETVVLFPKEARLRNLTYAAPLYID 124
Query: 116 VTKRVIKKGHDGE--------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
+ K VI + +GE EVPIMLRSSYC+L++ + + LT+LGECPYD+GG
Sbjct: 125 IKKTVITRVPNGEAETEEESYPKIFIGEVPIMLRSSYCSLHERTNQQLTQLGECPYDQGG 184
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YF++NGSEKVLIAQE+M+ N VYVF+K QP+KYAY AE S+ E+ R S++ + ML+R
Sbjct: 185 YFVVNGSEKVLIAQERMANNQVYVFRKSQPSKYAYQAECRSVVENSTRNTSSMSIRMLAR 244
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
+ GG GQ I ATLPYIR +IPI+I+FRALG TAD+DIL+H+ YDF DT MME LRPS
Sbjct: 245 S---GGKGGQAIRATLPYIRADIPILIIFRALGLTADKDILQHVVYDFNDTAMMEALRPS 301
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
+EEAF IQ Q+ +IGKRG+ GVTREK I YA++ILQ+EMLPHV G+F ETKKAY+
Sbjct: 302 IEEAFPIQTQEVALDFIGKRGSNPGVTREKRIHYARDILQREMLPHVAIGEFSETKKAYF 361
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
FG+++HRLLL ALGRR +DDRDHY NKRLDL GPLL LFR LFRKLT DVRS+VQK VD
Sbjct: 362 FGYMVHRLLLVALGRRDQDDRDHYCNKRLDLGGPLLANLFRQLFRKLTKDVRSHVQKAVD 421
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY--- 454
GK++NL A+ TIT GL+YS+ATGNWG AG RAGVSQVLN LTYAST ++
Sbjct: 422 RGKEINLMAAVNKDTITRGLRYSIATGNWGMQGTAGMRAGVSQVLNRLTYASTLSHLRRI 481
Query: 455 -----LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFL 509
KLAKPRQLHNSQWG++CPAETPEGQACGLVKNLALM Y+++G + PI EFL
Sbjct: 482 SSPIGREGKLAKPRQLHNSQWGVICPAETPEGQACGLVKNLALMSYVSVGCPSAPIGEFL 541
Query: 510 EEWGTENFE 518
EEW TEN E
Sbjct: 542 EEWSTENLE 550
>gi|440801047|gb|ELR22072.1| DNAdirected RNA polymerase, beta subunit [Acanthamoeba castellanii
str. Neff]
Length = 1196
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/533 (65%), Positives = 405/533 (75%), Gaps = 40/533 (7%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS------- 74
W VISAYFEEKGLVRQQLDSFD F QNTMQE+VDES D+ ++PESQH PG
Sbjct: 47 WTVISAYFEEKGLVRQQLDSFDAFIQNTMQELVDESPDLILQPESQHKPGAGPQTQTRYI 106
Query: 75 -DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKK-GHDGE---- 128
+F +IYLS+P MTE+DG T + ARLRNLTYSAPL+VD++K I G +GE
Sbjct: 107 INFGQIYLSRPTMTEADGSTQAMLPNEARLRNLTYSAPLFVDMSKTTITAAGEEGETHQS 166
Query: 129 ----------EVPIMLRSSYCTLY-QNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
+VPIMLRS+YC L S K LTELGECPYD+GGYF+INGSEKVLIAQEK
Sbjct: 167 TEELSRVFIGKVPIMLRSNYCMLAGAPSDKDLTELGECPYDQGGYFVINGSEKVLIAQEK 226
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATL 237
MS NHVYVFKK+ P+KYAYVAE+ S E+ +RP ST++V M+ R+ GS GQ + AT+
Sbjct: 227 MSHNHVYVFKKQAPSKYAYVAEIRSCLETGSRPTSTMYVKMMQRS----GSKGQTLKATI 282
Query: 238 PYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ----QY 293
PYIR +IPIII+FRALGF AD +ILE I YDF + MME+LRPSLEEAF IQ+Q Y
Sbjct: 283 PYIRQDIPIIIVFRALGFVADREILELIVYDFDNKDMMEMLRPSLEEAFVIQDQAVALDY 342
Query: 294 IGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRR 353
IGKRG T G TREK IKYAKEILQKEMLPHVG +CETKKAY+FG+IIHRLLL A G+R
Sbjct: 343 IGKRGTTTGATREKRIKYAKEILQKEMLPHVGISQYCETKKAYFFGYIIHRLLLAAQGKR 402
Query: 354 AEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTI 413
DDRDHYGNKRLDLAGPLLG LFR LF+KL DVR Y+QKCVD+GK+ NL A+K+KTI
Sbjct: 403 PLDDRDHYGNKRLDLAGPLLGTLFRQLFKKLNKDVRGYLQKCVDSGKEFNLMMAVKSKTI 462
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQL 465
T GLKYSLATGNW + G ++GVSQVLN LT+AST ++ KLAKPRQL
Sbjct: 463 TNGLKYSLATGNWTSTRSVGAKSGVSQVLNRLTFASTLSHLRRLNTPIGREGKLAKPRQL 522
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
HN+ WGM+CPAETPEGQACGLVKNLALM YI++GSA+ PILEFLEEW TEN E
Sbjct: 523 HNTHWGMICPAETPEGQACGLVKNLALMAYISVGSASAPILEFLEEWSTENLE 575
>gi|307103930|gb|EFN52187.1| hypothetical protein CHLNCDRAFT_59036 [Chlorella variabilis]
Length = 1175
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/552 (62%), Positives = 410/552 (74%), Gaps = 38/552 (6%)
Query: 3 MEEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI 62
+E+E L E ++AWAVISAYFEEKGLVRQQLDSF++F ++QEIVDE+ I I
Sbjct: 4 LEDEGLSPSAAAEIDDQDAWAVISAYFEEKGLVRQQLDSFNDFINTSLQEIVDENKLISI 63
Query: 63 RPESQHNPGQQSD----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPL 112
P+SQH PG Q + F +IYLSKP+ E+DGETA LF K ARLRNLTY+APL
Sbjct: 64 TPQSQHVPGMQVEDDVEKIFEVEFGQIYLSKPVFIEADGETAVLFPKEARLRNLTYAAPL 123
Query: 113 YVDVTKRVIKKGHDGEE--------------VPIMLRSSYCTLYQNSQKALTELGECPYD 158
YVD+ +R DG E VPIMLRS YC L S++ L +LGECPYD
Sbjct: 124 YVDIERRDKVVHSDGSEEVEVTPYPKVFLGDVPIMLRSDYCNLSGRSERDLCDLGECPYD 183
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
+GGYF+INGSEKVLIAQE+M+ NHVYVF+K QP+KYAYVAE S+ E R ST+ V M
Sbjct: 184 QGGYFVINGSEKVLIAQERMANNHVYVFRKSQPSKYAYVAECRSVVEGSTRTVSTMQVKM 243
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
LSR KG +GQ I A++PY+R +IPI+I+FRALGF AD+DILEHI YDF DT MME L
Sbjct: 244 LSRAGQKG--AGQCIRASIPYVRADIPILIIFRALGFVADKDILEHIVYDFGDTTMMEAL 301
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
RPS+EEAF IQ+Q+ YIGKRG+T+G TR I+YA+E+LQKE+LPHVG +FCETKK
Sbjct: 302 RPSIEEAFPIQSQEVALDYIGKRGSTIGATRNARIQYARELLQKELLPHVGMEEFCETKK 361
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
AY+FG++IHRLLL ALGRR EDDRDHYGNKRLDL GPLL LFR LFRKL+ DVR YVQK
Sbjct: 362 AYFFGYVIHRLLLVALGRREEDDRDHYGNKRLDLGGPLLANLFRQLFRKLSKDVRGYVQK 421
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY 454
CVD GK++NL AI TIT GL+YSLATGNWG A R GVSQVLN LTYAST ++
Sbjct: 422 CVDKGKEINLTSAINKDTITRGLRYSLATGNWGVVGAGEVRPGVSQVLNRLTYASTLSHL 481
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
K+AKPRQLHNSQWGM+CPAETPEGQACGLVKNLALM YI++G A+ P+L
Sbjct: 482 RRINSPIGREGKIAKPRQLHNSQWGMICPAETPEGQACGLVKNLALMTYISVGCASNPVL 541
Query: 507 EFLEEWGTENFE 518
+FL+EW TE+ E
Sbjct: 542 DFLQEWATEDLE 553
>gi|145340678|ref|XP_001415447.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575670|gb|ABO93739.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1174
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/537 (64%), Positives = 404/537 (75%), Gaps = 38/537 (7%)
Query: 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD-- 75
QE+AW VIS++FEEKGLVRQQLDSF+EF Q+TMQEIVDE +IE+ PE QH PGQ D
Sbjct: 16 QEDAWVVISSFFEEKGLVRQQLDSFNEFIQHTMQEIVDEMREIELTPEHQHMPGQDIDSM 75
Query: 76 --------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
F +IYLSKPM+TE+DG T TLF K ARLRNLTYSAPLYVD+ K V DG
Sbjct: 76 EKKTYKISFNQIYLSKPMVTEADGYTTTLFPKEARLRNLTYSAPLYVDMVKEVTTVQPDG 135
Query: 128 E--------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLI 173
E +VPIMLRS YC+L+ ++ K LTELGECPYDEGGYF+INGSEKVLI
Sbjct: 136 ETTVEKEILNKNFIGKVPIMLRSDYCSLHGHTDKELTELGECPYDEGGYFVINGSEKVLI 195
Query: 174 AQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI 233
AQE+MSTNHVYVF+K+QP+K+ + AE S E +R S+ + L K I
Sbjct: 196 AQERMSTNHVYVFEKKQPSKFMWQAECRSQPERGSRGASSCVMRQLHAPGTKDAPGP--I 253
Query: 234 HATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ- 292
TLPYIRT+IPI ++FRALGF AD+DILEHI YD D +MME+LRPS+EEAF IQ+Q+
Sbjct: 254 RCTLPYIRTDIPIFVVFRALGFVADKDILEHIVYDLADNEMMEMLRPSIEEAFVIQSQEV 313
Query: 293 ---YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCA 349
+IGKRG+ VGV+REK IKYAKEILQKE+LPHVG + CETKKAY+ G++IHRLLLC+
Sbjct: 314 ALDFIGKRGSAVGVSREKRIKYAKEILQKELLPHVGVREDCETKKAYFLGYMIHRLLLCS 373
Query: 350 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIK 409
LGRR EDDRDHYGNKRLDL GPLL LFR LFRKLT DVR Y Q+C+D+GK++ LQ AIK
Sbjct: 374 LGRRPEDDRDHYGNKRLDLGGPLLAQLFRQLFRKLTKDVRLYCQRCIDSGKEIQLQLAIK 433
Query: 410 AKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAK 461
AKTIT GLKYSLATGNWG AA RAGVSQVLN L+Y+ST ++ KLAK
Sbjct: 434 AKTITQGLKYSLATGNWGSQGAADIRAGVSQVLNRLSYSSTLSHLRRINSPIGREGKLAK 493
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PRQLHNS WGM+CPAETPEGQA GLVKNLALM +++GS + PILEFL+EW EN E
Sbjct: 494 PRQLHNSLWGMICPAETPEGQAVGLVKNLALMALVSVGSPSEPILEFLDEWTMENLE 550
>gi|303273466|ref|XP_003056094.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462178|gb|EEH59470.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1172
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/538 (62%), Positives = 399/538 (74%), Gaps = 39/538 (7%)
Query: 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIV-DESADIEIRPESQHNPGQ---- 72
QE+AW VIS++FEEKGL RQQLDSF+EF Q+ MQEIV DE + E+ PE QH PG+
Sbjct: 15 QEDAWTVISSFFEEKGLARQQLDSFNEFIQHAMQEIVVDEMSSFELEPEQQHVPGEEGEG 74
Query: 73 ------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHD 126
+ F +IYLSKPM+TE+DG T+TLF K ARLRNLTYSAPLYVD+ K V D
Sbjct: 75 GEKKTYKISFKQIYLSKPMVTEADGMTSTLFPKEARLRNLTYSAPLYVDMEKTVTTVTLD 134
Query: 127 GEE--------------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVL 172
++ VPIMLRS YC+L+ ++ K LTELGECPYDEGGYFIINGSEKVL
Sbjct: 135 SQKTEEVEKINKVFIGKVPIMLRSEYCSLHDHTDKELTELGECPYDEGGYFIINGSEKVL 194
Query: 173 IAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQY 232
IAQEKMS+NHVYVFKKRQP+KY +VAE S ES R S ML K
Sbjct: 195 IAQEKMSSNHVYVFKKRQPSKYMWVAECRSSPESGARAASACVARMLHSPGTKMEPG--C 252
Query: 233 IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ 292
I TLPYIRT+IP+ ++FRALGF AD+DILEHI YDF D MELLRPS+EEA IQ+++
Sbjct: 253 IRVTLPYIRTDIPLFVVFRALGFVADKDILEHIVYDFNDHDAMELLRPSIEEALPIQSKK 312
Query: 293 ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLC 348
YIGKRG+ VGV+REK IKYA++ILQKE+LPHVG + CET+KAYY G+I+HRLLLC
Sbjct: 313 VALDYIGKRGSAVGVSREKRIKYAQDILQKELLPHVGVDEECETRKAYYLGYIVHRLLLC 372
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAI 408
ALGRR EDDRDH+GNKR+DLAGPL+ LFR LFRKLT DVR Y Q+CVD+GK++ L A+
Sbjct: 373 ALGRRNEDDRDHFGNKRMDLAGPLIAILFRQLFRKLTKDVRLYCQRCVDSGKEIQLTLAV 432
Query: 409 KAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLA 460
KAKTIT GLKYSLATGNWG A RAGVSQVLN L+++ST ++ KLA
Sbjct: 433 KAKTITSGLKYSLATGNWGAQGAQDIRAGVSQVLNRLSFSSTLSHLRRLNSPIGREGKLA 492
Query: 461 KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
KPRQLHNS WGM+CPAETPEGQACGLVKNL+LM +++GS + P+LEFLEEW EN E
Sbjct: 493 KPRQLHNSHWGMVCPAETPEGQACGLVKNLSLMALVSVGSPSSPVLEFLEEWTMENLE 550
>gi|328870070|gb|EGG18445.1| RNA polymerase II core subunit [Dictyostelium fasciculatum]
Length = 1565
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/554 (60%), Positives = 415/554 (74%), Gaps = 45/554 (8%)
Query: 3 MEEERLEEDEE-----EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDES 57
M E + +DE+ EE QE+AW VIS+YF+EKGLVRQQLDSFDEF QNTMQ+I+DES
Sbjct: 1 MAEYNMNDDEDMINGSEEIVQEDAWTVISSYFQEKGLVRQQLDSFDEFIQNTMQDIIDES 60
Query: 58 ADIEIRPESQHNPGQQS---------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTY 108
I ++PE+QH PGQ F +IYLSKP ++ DG T ++ AR+RNLTY
Sbjct: 61 PPITLKPETQHQPGQSQAHNYTTFSIKFGQIYLSKPT-SDIDGLTQSITPNQARIRNLTY 119
Query: 109 SAPLYVDVTKRVIKKGHDGEE---------VPIMLRSSYCTLYQNSQKALTEL---GECP 156
SAPLYVD+TK + K EE VPIMLRS YC L + + T+L GECP
Sbjct: 120 SAPLYVDITKTLTTKQSVEEEALEKIFIGKVPIMLRSKYCILSGDGDTSDTDLAMMGECP 179
Query: 157 YDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV 216
+D+GGYF+INGSEKVLIAQEKMS NHVYVFKK P+KY+YVAE+ S E+ +RP ST++V
Sbjct: 180 FDQGGYFVINGSEKVLIAQEKMSHNHVYVFKKTPPSKYSYVAEIRSCQETGSRPTSTMYV 239
Query: 217 PMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMME 276
ML ++S G SG I AT+PYI+ ++PI+++FRALGF AD+DILEHICYDF D Q+M+
Sbjct: 240 KMLQKSSK--GPSG--IKATIPYIKMDVPIVVIFRALGFVADKDILEHICYDFSDAQLMD 295
Query: 277 LLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET 332
L+RPSLEE+F IQNQ+ Y+GKRG+TVG TR+ IK+A+E+LQKEMLPHV ++ ET
Sbjct: 296 LMRPSLEESFVIQNQEVALDYLGKRGSTVG-TRDHRIKFAREVLQKEMLPHVSVEEYFET 354
Query: 333 KKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYV 392
KKAYYFG+I+HRLLL AL RR DDRDH+ NKRLDLAGPLLG LFR LF+KLT DVR ++
Sbjct: 355 KKAYYFGYIVHRLLLAALERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRMWL 414
Query: 393 QKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFT 452
Q+C+D GK+ AIK KTIT GLKYSLATGNWG + +G RAGV+QVLN LT+AST +
Sbjct: 415 QRCIDKGKEFTPISAIKPKTITSGLKYSLATGNWGAAH-SGARAGVAQVLNRLTFASTLS 473
Query: 453 YYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYP 504
+ KLAKPRQLHN+ WG++CP+ETPEGQACGLVKNLA+M YI++GSA+ P
Sbjct: 474 HLRRLNTPIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMAYISVGSASEP 533
Query: 505 ILEFLEEWGTENFE 518
ILEFLEEW TEN E
Sbjct: 534 ILEFLEEWSTENLE 547
>gi|255073731|ref|XP_002500540.1| predicted protein [Micromonas sp. RCC299]
gi|226515803|gb|ACO61798.1| predicted protein [Micromonas sp. RCC299]
Length = 1178
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/544 (61%), Positives = 401/544 (73%), Gaps = 45/544 (8%)
Query: 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD-- 75
QE+AW VIS++FEEKGL RQQLDSF+EF Q+TMQEIVDE +D I PE QH PG+++D
Sbjct: 16 QEDAWTVISSFFEEKGLARQQLDSFNEFIQHTMQEIVDEMSDFTIEPEEQHMPGEEADGK 75
Query: 76 --------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGH-- 125
F +IYLSKPM+TE+DG T+TLF K ARLRNLTYSAPLY+D+ K I
Sbjct: 76 GKKKYKVEFKQIYLSKPMVTEADGMTSTLFPKEARLRNLTYSAPLYIDMAKSTITTTDEI 135
Query: 126 -----------DGEE--------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIIN 166
D EE VPIMLRS YC+L+ ++ K LTELGECPYDEGGYFIIN
Sbjct: 136 DATTGKYIETIDTEEYPKVFFGKVPIMLRSQYCSLHDHTDKELTELGECPYDEGGYFIIN 195
Query: 167 GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKG 226
GSEKVLIAQEKMSTNHVYVF+KRQP+KY +VAE S ES R S+ + K
Sbjct: 196 GSEKVLIAQEKMSTNHVYVFEKRQPSKYMWVAECRSSPESGARAASSCMARLCHAPGTK- 254
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
I T+PYIRTEIP+ ++FRALGF AD+DILEH+ YDF+D +MM+LLR S+EEA
Sbjct: 255 -DEAGVISVTIPYIRTEIPLFVVFRALGFVADKDILEHLVYDFEDHEMMQLLRNSIEEAQ 313
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ+Q +IGKRG+ VGVTR K I+YA+EILQKE+LPHVG + CETKKAY+ G+I+
Sbjct: 314 VIQSQDVALDFIGKRGSAVGVTRPKRIQYAREILQKELLPHVGVNEGCETKKAYFLGYIV 373
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
+RLLLCALGR+ EDDRDH+GNKR+DL+GPL+ LFR LFRK+T DVR Y Q+C+D+GKD+
Sbjct: 374 NRLLLCALGRKKEDDRDHFGNKRMDLSGPLIAMLFRQLFRKVTKDVRLYSQRCIDSGKDI 433
Query: 403 NLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW----- 457
L A+KAKTIT GLKYSLATGNWG A RAGVSQVLN L+++ST ++
Sbjct: 434 QLTLAVKAKTITSGLKYSLATGNWGAQGAQDIRAGVSQVLNRLSFSSTLSHLRRLNSPIG 493
Query: 458 ---KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
KLAKPRQLHNS WGM+CPAETPEGQA GLVKNL+LM +++GS + P+LEFLEEW
Sbjct: 494 REGKLAKPRQLHNSHWGMVCPAETPEGQAVGLVKNLSLMCLVSVGSPSAPLLEFLEEWSM 553
Query: 515 ENFE 518
EN E
Sbjct: 554 ENLE 557
>gi|330796313|ref|XP_003286212.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325083799|gb|EGC37242.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 1169
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/558 (59%), Positives = 416/558 (74%), Gaps = 48/558 (8%)
Query: 3 MEEERLEEDEEE----ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
M + L +D ++ + TQE+ W VISAYF+EKGLVRQQLDSFDEF QNTMQEI+DES
Sbjct: 1 MSDYMLNDDSQDNYNGDITQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESP 60
Query: 59 DIEIRPESQHNPGQQS----------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTY 108
I +RPE+QH+PGQ F +IYLSKP E DG + + AR+RNLTY
Sbjct: 61 PITLRPEAQHHPGQTQIQNTVSTFSVKFGQIYLSKPT-AEIDGVSQQVTPNQARIRNLTY 119
Query: 109 SAPLYVDVTKRVIK--KGHDGEE--------------VPIMLRSSYCTLYQNSQKALTEL 152
SAPL+VD+TK V+ KG E+ VPIMLRS YC LY+ + + LT +
Sbjct: 120 SAPLFVDITKTVMTGPKGKIEEQRRNDELLKRVFIGKVPIMLRSQYCMLYEATDRDLTTM 179
Query: 153 GECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPS 212
GECP+D+GGYF+INGSEKVLIAQEKM+ NHVYVFKK P+KY+YVAE+ S E+ +RP S
Sbjct: 180 GECPFDQGGYFVINGSEKVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTS 239
Query: 213 TIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDT 272
T+++ ML T+ G G I AT+PYI+ ++P+II+FRALGF AD+DILEHICYDF D
Sbjct: 240 TMYLKMLHNTNK--GPVG--IKATIPYIKQDVPVIIVFRALGFVADKDILEHICYDFNDA 295
Query: 273 QMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGD 328
QMM+L+RPSLEE+F IQ+Q+ Y+GKRG+T+G TRE+ IK+A+E+LQKEMLPHV +
Sbjct: 296 QMMDLMRPSLEESFVIQSQEVALDYLGKRGSTIG-TREQRIKFAREVLQKEMLPHVSVAE 354
Query: 329 FCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDV 388
F ETKKA+YFG+I+HRLLL +L RR DDRDH+ NKRLDLAGPLLG LFR LF+KLT DV
Sbjct: 355 FYETKKAFYFGYIVHRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDV 414
Query: 389 RSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYA 448
R Y+Q+C+D K+ A+K+KTIT GLKYSLATGNWG + GT++GV+QVLN LT+A
Sbjct: 415 RLYLQRCIDKDKEFIPSSAVKSKTITSGLKYSLATGNWGSSKSGGTKSGVAQVLNRLTFA 474
Query: 449 STFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGS 500
ST ++ KLAKPRQLHN+ WG++CP+ETPEGQACGLVKNL++M YI++GS
Sbjct: 475 STLSHLRRLNTPIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLSMMSYISVGS 534
Query: 501 AAYPILEFLEEWGTENFE 518
A+ PILEFLEEW TEN E
Sbjct: 535 ASQPILEFLEEWTTENLE 552
>gi|325186944|emb|CCA21488.1| PREDICTED: hypothetical protein [Albugo laibachii Nc14]
Length = 1234
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/544 (60%), Positives = 394/544 (72%), Gaps = 42/544 (7%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS- 74
+QE+AWAVIS+YFEEKGLVRQQLDSFDEF QNTMQE+VD+S I I PE+Q+ PGQ
Sbjct: 55 VSQEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQELVDDSRHIRINPEAQYTPGQAKA 114
Query: 75 --------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHD 126
F +IYLSKP MTE+DG T+ +F ARLRNLTYSAPLYVDV + +
Sbjct: 115 ATDTIYVIQFGQIYLSKPTMTEADGSTSVMFPHEARLRNLTYSAPLYVDVVCQKFQANAT 174
Query: 127 G----EE----------------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIIN 166
G EE VPIMLRS YC L + K LTEL EC YD+GGYF+IN
Sbjct: 175 GPTKIEEMEPYDQVETPKEFIGMVPIMLRSQYCVLTHKTDKELTELNECVYDQGGYFLIN 234
Query: 167 GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKG 226
GSEKVLIAQE+MS NHVY F+K +KY++V E S E RP ST++V M R+ K
Sbjct: 235 GSEKVLIAQERMSNNHVYCFRKSGVSKYSWVCETRSHVEHGVRPTSTMYVQMYQRSGGKS 294
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
SG I A +PYIR +IP++I+FRALGF AD +ILEHICYDF D ++ME +PSLEEAF
Sbjct: 295 AISGNQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTDVELMERFKPSLEEAF 354
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ Q+ +IG+RG+ + V + I+YA++ILQKEMLPHVG D ETKKAY+ G+++
Sbjct: 355 VIQEQEVALDFIGRRGSAINVGKADRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVV 414
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
H+LL+C+LGR EDDRDHYGNKRLDLAGPLLG LFR LF+KLT DV++Y+QKCVDNGKD
Sbjct: 415 HKLLMCSLGRIGEDDRDHYGNKRLDLAGPLLGSLFRILFKKLTKDVKTYLQKCVDNGKDF 474
Query: 403 NLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW----- 457
NL AI+++TIT GL+YSLATGNWG A ++AGVSQVLN LTYAS+ ++
Sbjct: 475 NLTLAIRSRTITNGLRYSLATGNWGMQKTA-SKAGVSQVLNRLTYASSLSHLRRLNTPLG 533
Query: 458 ---KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K A+PRQLHN+ WGM+CPAETPEGQA GLVKNLALM YI++GS PILEFLEEW T
Sbjct: 534 REGKQAQPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWAT 593
Query: 515 ENFE 518
EN E
Sbjct: 594 ENLE 597
>gi|66806179|ref|XP_636812.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|74896933|sp|Q54J75.1|RPB2_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2
gi|60465215|gb|EAL63310.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 1170
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/554 (59%), Positives = 413/554 (74%), Gaps = 44/554 (7%)
Query: 2 MMEEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIE 61
MM ++ +++ + +QE+ W VISAYF+EKGLVRQQLDSFDEF QNTMQEI+DES I
Sbjct: 5 MMNDDS-QDNPHADISQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPIT 63
Query: 62 IRPESQHNPGQ----------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
+RPESQH+PGQ F +IYLSKP E DG + + AR+RNLTYSAP
Sbjct: 64 LRPESQHHPGQAVVSNNVSTFSVKFGQIYLSKPT-AEIDGVSQQVTPNQARIRNLTYSAP 122
Query: 112 LYVDVTKRVI----KKGHDGE-----------EVPIMLRSSYCTLYQNSQKALTELGECP 156
L+VD+TK V+ KG + +VPIMLRS YC L + + LT +GEC
Sbjct: 123 LFVDITKTVMTGSKSKGDERRTDEVLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGECS 182
Query: 157 YDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV 216
+D+GGYFIINGSEKVLIAQEKM+ NHVYVFKK P+KY+YVAE+ S E+ +RP ST+++
Sbjct: 183 FDQGGYFIINGSEKVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTMYL 242
Query: 217 PMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMME 276
ML T+ G G I AT+PYI+ ++P+II+FRALGF AD+DILEHICYDF+D QMM+
Sbjct: 243 KMLHNTNK--GPVG--IKATVPYIKQDVPVIIVFRALGFVADKDILEHICYDFKDAQMMD 298
Query: 277 LLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET 332
L+RPSLEE+F IQ+Q+ Y+GKRG+T+G TRE+ IK+A+E+LQKEMLPHV +F ET
Sbjct: 299 LMRPSLEESFVIQSQEVALDYLGKRGSTMG-TREQRIKFAREVLQKEMLPHVSVAEFYET 357
Query: 333 KKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYV 392
KKA+YFG+I HRLLL +L RR DDRDH+ NKRLDLAGPLLG LFR LF+KLT DVR Y+
Sbjct: 358 KKAFYFGYITHRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYL 417
Query: 393 QKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFT 452
Q+C+D K+ A+K+KTIT GLKYSLATGNWG + GT++GV+QVLN LT+AST +
Sbjct: 418 QRCIDKDKEFIASSAVKSKTITSGLKYSLATGNWGSSKSGGTKSGVAQVLNRLTFASTLS 477
Query: 453 YYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYP 504
+ KLAKPRQLHN+ WG++CP+ETPEGQACGLVKNLA+M YI++GSA+ P
Sbjct: 478 HLRRLNTPIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQP 537
Query: 505 ILEFLEEWGTENFE 518
ILEFLEEW TEN E
Sbjct: 538 ILEFLEEWTTENLE 551
>gi|301101902|ref|XP_002900039.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
infestans T30-4]
gi|262102614|gb|EEY60666.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
infestans T30-4]
Length = 1202
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/544 (59%), Positives = 393/544 (72%), Gaps = 42/544 (7%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS- 74
+QE+AWAVIS+YFEEKGLVRQQLDSFDEF QNTMQE+VD+S I I PE+Q+ PGQ
Sbjct: 27 VSQEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQELVDDSRSIRINPEAQYAPGQAKT 86
Query: 75 --------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHD 126
F +IYLSKP MTE+DG T+ +F ARLRNLTYSAPLYVDV + +
Sbjct: 87 NTDTIYNISFGQIYLSKPTMTEADGSTSVMFPHEARLRNLTYSAPLYVDVVCQKYQAPSS 146
Query: 127 GEE--------------------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIIN 166
G VPIMLRS YC L + K LTEL EC YD+GGYFIIN
Sbjct: 147 GPANLEDMEPYDQVETPKEFIGMVPIMLRSQYCVLTHKTDKELTELNECVYDQGGYFIIN 206
Query: 167 GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKG 226
GSEKVLIAQE+MS NHVY F+K +KY++V E S E RP ST++V M + K
Sbjct: 207 GSEKVLIAQERMSNNHVYCFRKNAASKYSWVCETRSHVEHGVRPTSTMYVQMYQKGGGKS 266
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
+G I A +PYIR +IP++I+FRALGF AD +ILEHICYDF D ++ME + SLEEAF
Sbjct: 267 AITGNQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFSDAELMERFKSSLEEAF 326
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ Q+ +IG+RG+ + V++ I+YA++ILQKEMLPHVG D ETKKAY+ G+++
Sbjct: 327 VIQEQEVALDFIGRRGSAINVSKADRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVV 386
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
H+LL+C+LGR EDDRDHYGNKRLDLAGPLLGGLFR LF+KLT DV+S++QKCVDNGKD
Sbjct: 387 HKLLMCSLGRIGEDDRDHYGNKRLDLAGPLLGGLFRILFKKLTKDVKSFLQKCVDNGKDF 446
Query: 403 NLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW----- 457
NL AI+++TIT GL+YSLATGNWG +A ++AGVSQVLN LTYAS+ ++
Sbjct: 447 NLTLAIRSRTITNGLRYSLATGNWGMQKSA-SKAGVSQVLNRLTYASSLSHLRRLNTPLG 505
Query: 458 ---KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K A+PRQLHN+ WGM+CPAETPEGQA GLVKNLALM YI++GS PILEFLEEW T
Sbjct: 506 REGKQAQPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWAT 565
Query: 515 ENFE 518
EN E
Sbjct: 566 ENLE 569
>gi|348676682|gb|EGZ16499.1| hypothetical protein PHYSODRAFT_262616 [Phytophthora sojae]
Length = 1171
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/542 (59%), Positives = 391/542 (72%), Gaps = 29/542 (5%)
Query: 2 MMEEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIE 61
M E ++ D E + + A SA EKGLVRQQLDSFDEF QNTMQE+VD+S I
Sbjct: 1 MSWENPIDSDTERDDGGDLGLAAGSA---EKGLVRQQLDSFDEFIQNTMQELVDDSRSIR 57
Query: 62 IRPESQHNPGQQS---------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPL 112
I PE+Q+ PGQ F +IYLSKP MTE+DG T+ +F ARLRNLTYSAPL
Sbjct: 58 INPEAQYAPGQAKANTDTIYNISFGQIYLSKPTMTEADGSTSVMFPHEARLRNLTYSAPL 117
Query: 113 YVDVTKRVIKKGHDGEE----VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGS 168
YVDV + +E VPIMLRS YC L + K LTEL EC YD+GGYFIINGS
Sbjct: 118 YVDVDMDPYDQVETPKEFIGMVPIMLRSQYCVLTHKTDKELTELNECVYDQGGYFIINGS 177
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGS 228
EKVLIAQE+MS NHVY F+K +KY++V E S E RP ST++V M ++ K
Sbjct: 178 EKVLIAQERMSNNHVYCFRKNAASKYSWVCETRSHVEHGVRPTSTMYVQMYQKSGGKSAI 237
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
+G I A +PYIR +IP++I+FRALGF AD +ILEHICYDF D ++ME + SLEEAF I
Sbjct: 238 TGNQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFSDAELMERFKSSLEEAFVI 297
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
Q Q+ +IG+RG+ + V++ I+YA++ILQKEMLPHVG D ETKKAY+ G+++H+
Sbjct: 298 QEQEVALDFIGRRGSAINVSKADRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHK 357
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LL+C+LGR EDDRDHYGNKRLDLAGPLLGGLFR LF+KLT DV+S++QKCVDNGKD NL
Sbjct: 358 LLMCSLGRIGEDDRDHYGNKRLDLAGPLLGGLFRILFKKLTKDVKSFLQKCVDNGKDFNL 417
Query: 405 QFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW------- 457
AI+++TIT GL+YSLATGNWG +A ++AGVSQVLN LTYAS+ ++
Sbjct: 418 TLAIRSRTITNGLRYSLATGNWGMQKSA-SKAGVSQVLNRLTYASSLSHLRRLNTPLGRE 476
Query: 458 -KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
K A+PRQLHN+ WGM+CPAETPEGQA GLVKNLALM YI++GS PILEFLEEW TEN
Sbjct: 477 GKQAQPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWATEN 536
Query: 517 FE 518
E
Sbjct: 537 LE 538
>gi|324120604|dbj|BAJ78693.1| RNA polymerase II second largest subunit [Thermobia domestica]
Length = 1175
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/552 (60%), Positives = 397/552 (71%), Gaps = 37/552 (6%)
Query: 3 MEEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
++E++ EE++ EE + QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S
Sbjct: 4 LDEDQYEEEDGEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP 63
Query: 59 DIEIRPESQHNPGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
I+++ E+QH G+ F +IYLSKP E DG + ARLRNLTYSAP
Sbjct: 64 QIDLQAEAQHTSGEIETPPRYLLKFEQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSAP 123
Query: 112 LYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
LYVD+TK VIK+G D E +PIMLRS+YC L + + LTEL ECP D GG
Sbjct: 124 LYVDITKTVIKEGEDPVETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGG 183
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIINGSEKVLIAQEKM+TN VYVF + +KYAY AE+ S E +RP ST++V M++R
Sbjct: 184 YFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKAEIRSCLEHSSRPTSTLWVNMMAR 242
Query: 222 --TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
S K + GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++
Sbjct: 243 GGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVK 302
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
PSL+EAF IQ Q +IG RGA GVT+EK IKYAKEILQKEMLPHVG DFCETKKA
Sbjct: 303 PSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKA 362
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK
Sbjct: 363 YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKF 422
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
+D GKD NL+ AIK K IT GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 IDRGKDFNLELAIKTKIITDGLKYSLATGNWGDQKKAHLARAGVSQVLNRLTFASTLSHL 482
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PIL
Sbjct: 483 RRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 542
Query: 507 EFLEEWGTENFE 518
EFLEEW EN E
Sbjct: 543 EFLEEWSMENLE 554
>gi|324120648|dbj|BAJ78715.1| RNA polymerase II second largest subunit [Cryptotympana facialis]
Length = 1175
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/552 (60%), Positives = 397/552 (71%), Gaps = 37/552 (6%)
Query: 3 MEEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
++E++ EEDE EE + QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S
Sbjct: 4 LDEDQYEEDEAEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP 63
Query: 59 DIEIRPESQHNPGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
I+++ E+QH G+ F +IYLSKP E DG + + ARLRNLTYSAP
Sbjct: 64 QIDLQAEAQHTSGEIETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAP 123
Query: 112 LYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
LYVD+TK ++K+G D E +PIMLRS+YC L + + LTEL ECP D GG
Sbjct: 124 LYVDITKTIVKEGEDPIETQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGG 183
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIINGSEKVLIAQEKM+TN VYVF + K+AY AE+ S E +RP ST++V M++R
Sbjct: 184 YFIINGSEKVLIAQEKMATNTVYVFSMKD-GKFAYKAEIRSCLEHSSRPTSTLWVNMMAR 242
Query: 222 --TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
S K + GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++
Sbjct: 243 GGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVK 302
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
PSL+EAF IQ Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKA
Sbjct: 303 PSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKA 362
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK
Sbjct: 363 YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKF 422
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
+D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHL 482
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PIL
Sbjct: 483 RRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 542
Query: 507 EFLEEWGTENFE 518
EFLEEW EN E
Sbjct: 543 EFLEEWSMENLE 554
>gi|324120598|dbj|BAJ78690.1| RNA polymerase II second largest subunit [Pedetontus unimaculatus]
Length = 1176
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/552 (60%), Positives = 396/552 (71%), Gaps = 37/552 (6%)
Query: 3 MEEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
++E++ EE++ EE + QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S
Sbjct: 4 IDEDQFEEEDAEEVSSDLWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP 63
Query: 59 DIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
I+++ E+QH G+ + F +IYLSKP E DG + ARLRNLTYSAP
Sbjct: 64 QIDLQAEAQHTSGEIENPPRYLLKFEQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSAP 123
Query: 112 LYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
LYVD+TK V+K G D E +PIMLRS+YC L + + LTEL ECP D GG
Sbjct: 124 LYVDITKTVVKDGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGG 183
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIINGSEKVLIAQEKM+TN VYVF + KYAY +E+ S E +RP ST++V ML+R
Sbjct: 184 YFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKSEIRSCLEHSSRPTSTLWVNMLAR 242
Query: 222 --TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
S K S GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++
Sbjct: 243 GGQSVKKSSVGQKIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVK 302
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
PSL+EAF IQ Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKA
Sbjct: 303 PSLDEAFVIQEQNVALNFIGGRGAKPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKA 362
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK
Sbjct: 363 YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLMKEVRMYAQKF 422
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
+D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHL 482
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PIL
Sbjct: 483 RRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 542
Query: 507 EFLEEWGTENFE 518
EFLEEW EN E
Sbjct: 543 EFLEEWSMENLE 554
>gi|324120606|dbj|BAJ78694.1| RNA polymerase II second largest subunit [Isolepisma japonica]
Length = 1176
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/552 (60%), Positives = 397/552 (71%), Gaps = 37/552 (6%)
Query: 3 MEEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
++E++ EE++ EE + QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S
Sbjct: 4 LDEDQYEEEDGEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP 63
Query: 59 DIEIRPESQHNPGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
I+++ E+QH G+ F +IYLSKP E DG + + ARLRNLTYSAP
Sbjct: 64 QIDLQAEAQHTSGEIETPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAP 123
Query: 112 LYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
LYVD+TK VIK+G D E +PIMLRS+YC L + + LTEL ECP D GG
Sbjct: 124 LYVDITKTVIKEGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGG 183
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIINGSEKVLIAQEKM+TN VYVF + KYAY AE+ S E +RP ST++V M++R
Sbjct: 184 YFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKAEIRSCLEHSSRPTSTLWVNMMAR 242
Query: 222 --TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
S K + GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++
Sbjct: 243 GGQSIKKSAIGQRIVAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVK 302
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
PSL+EAF IQ Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKA
Sbjct: 303 PSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKA 362
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK
Sbjct: 363 YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKF 422
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
+D GKD NL+ AIK K IT GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 IDRGKDFNLELAIKTKIITDGLKYSLATGNWGDQKKAHLARAGVSQVLNRLTFASTLSHL 482
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PIL
Sbjct: 483 RRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 542
Query: 507 EFLEEWGTENFE 518
EFLEEW EN E
Sbjct: 543 EFLEEWSMENLE 554
>gi|324120638|dbj|BAJ78710.1| RNA polymerase II second largest subunit [Tenodera aridifolia]
Length = 1175
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/552 (60%), Positives = 397/552 (71%), Gaps = 37/552 (6%)
Query: 3 MEEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
+EE++ EED+ EE + QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S
Sbjct: 4 LEEDQYEEDDAEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP 63
Query: 59 DIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
I+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAP
Sbjct: 64 QIDLQAEAQHTSGEIENPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAP 123
Query: 112 LYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
LYVD+TK ++K G + E +PIMLRS+YC L + + LTEL ECP D GG
Sbjct: 124 LYVDITKTIVKDGEEPIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGG 183
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIINGSEKVLIAQEKM+TN VYVF + K+AY AE+ S E +RP ST++V M++R
Sbjct: 184 YFIINGSEKVLIAQEKMATNTVYVFSMKD-GKFAYKAEIRSCLEHSSRPTSTLWVNMMAR 242
Query: 222 --TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
S K + GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++
Sbjct: 243 GGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVK 302
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
PSL+EAF IQ Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKA
Sbjct: 303 PSLDEAFVIQEQNIALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKA 362
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK
Sbjct: 363 YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKF 422
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
+D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 IDKGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHMARAGVSQVLNRLTFASTLSHL 482
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PIL
Sbjct: 483 RRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 542
Query: 507 EFLEEWGTENFE 518
EFLEEW EN E
Sbjct: 543 EFLEEWSMENLE 554
>gi|324120670|dbj|BAJ78726.1| RNA polymerase II second largest subunit [Eretes sticticus]
Length = 1174
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/554 (60%), Positives = 396/554 (71%), Gaps = 38/554 (6%)
Query: 2 MMEEE--RLEEDEEE---ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDE 56
M EEE + EED EE E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++
Sbjct: 1 MYEEEGDQYEEDAEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 60
Query: 57 SADIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYS 109
S I+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYS
Sbjct: 61 SPQIDLQAEAQHTSGEIENPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYS 120
Query: 110 APLYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDE 159
APLYVD+TK ++K G D E +PIMLRS+YC L + + LTEL ECP D
Sbjct: 121 APLYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDP 180
Query: 160 GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPML 219
GGYFIINGSEKVLIAQEKM+TN VYVF + KYAY AE+ S E +RP ST++V M+
Sbjct: 181 GGYFIINGSEKVLIAQEKMATNTVYVFAMKD-GKYAYKAEIRSCLEHSSRPTSTLWVNMM 239
Query: 220 SR--TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMEL 277
+R + K + GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF+D +MME+
Sbjct: 240 ARGGQAIKKAAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEMMEM 299
Query: 278 LRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETK 333
++PSL+EAF IQ Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETK
Sbjct: 300 VKPSLDEAFVIQEQNVALNFIGARGAKPGVTKEKRIKYAREILQKEMLPHVGVSDFCETK 359
Query: 334 KAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQ 393
KAY+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y Q
Sbjct: 360 KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQ 419
Query: 394 KCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFT 452
K +D GKD NL AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST +
Sbjct: 420 KFIDKGKDFNLDLAIKTKMITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS 479
Query: 453 YY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYP 504
+ KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS P
Sbjct: 480 HLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSP 539
Query: 505 ILEFLEEWGTENFE 518
ILEFLEEW EN E
Sbjct: 540 ILEFLEEWSMENLE 553
>gi|324120622|dbj|BAJ78702.1| RNA polymerase II second largest subunit [Karoophasma biedouwense]
Length = 1176
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/552 (59%), Positives = 397/552 (71%), Gaps = 37/552 (6%)
Query: 3 MEEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
++E++ EED+ EE + QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S
Sbjct: 4 IDEDQYEEDDAEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP 63
Query: 59 DIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
I+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAP
Sbjct: 64 QIDLQAEAQHTSGEIENPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAP 123
Query: 112 LYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
LYVD+TK ++K G + E +PIMLRS+YC L + + LTEL ECP D GG
Sbjct: 124 LYVDITKTIVKDGEEPIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGG 183
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIINGSEKVLIAQEKM+TN VYVF + K+AY AE+ S E +RP ST++V M++R
Sbjct: 184 YFIINGSEKVLIAQEKMATNTVYVFSMKD-GKFAYKAEIRSCLEHSSRPTSTLWVNMMAR 242
Query: 222 --TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
S K + GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++
Sbjct: 243 GGQSIKKSAIGQRIIAVLPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVK 302
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
PSL+EAF IQ Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKA
Sbjct: 303 PSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKA 362
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK
Sbjct: 363 YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKF 422
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
+D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHL 482
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PIL
Sbjct: 483 RRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 542
Query: 507 EFLEEWGTENFE 518
EFLEEW EN E
Sbjct: 543 EFLEEWSMENLE 554
>gi|224049409|ref|XP_002192218.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Taeniopygia
guttata]
Length = 1174
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/550 (60%), Positives = 398/550 (72%), Gaps = 36/550 (6%)
Query: 4 EEERLEEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
E+ + +ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I
Sbjct: 6 EDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65
Query: 61 EIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLY
Sbjct: 66 DLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLY 125
Query: 114 VDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
VD+TK VIK+G D + +PIMLRS+YC L + + L EL ECP D GGYF
Sbjct: 126 VDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYF 185
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-- 221
IINGSEKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R
Sbjct: 186 IINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGG 244
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
AK + GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PS
Sbjct: 245 QGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPS 304
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+
Sbjct: 305 LDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYF 364
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D
Sbjct: 365 LGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID 424
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 425 RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEF
Sbjct: 485 LNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 545 LEEWSMENLE 554
>gi|324120650|dbj|BAJ78716.1| RNA polymerase II second largest subunit [Anacanthocoris
striicornis]
Length = 1175
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/552 (59%), Positives = 397/552 (71%), Gaps = 37/552 (6%)
Query: 3 MEEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
++EE+ E+DE EE + QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S
Sbjct: 4 LDEEQYEDDEAEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP 63
Query: 59 DIEIRPESQHNPGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
I+++ E+QH G+ F +IYLSKP E DG + + ARLRNLTYSAP
Sbjct: 64 QIDLQAEAQHTSGEVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAP 123
Query: 112 LYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
LYVD+TK +I++G + E +PIMLRS+YC L + + LTEL ECP D GG
Sbjct: 124 LYVDITKTIIREGEEPIESQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGG 183
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIINGSEKVLIAQEKM+TN VYVF + K+AY AE+ S E +RP ST++V M++R
Sbjct: 184 YFIINGSEKVLIAQEKMATNTVYVFSMKD-GKFAYKAEIRSCLEHSSRPTSTLWVNMMAR 242
Query: 222 --TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
S K + GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++
Sbjct: 243 GGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVK 302
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
PSL+EAF IQ Q +IG RGA GVT+E+ IKYA+EILQKEMLPHVG DFCETKKA
Sbjct: 303 PSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKA 362
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK
Sbjct: 363 YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKF 422
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
+D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHL 482
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PIL
Sbjct: 483 RRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 542
Query: 507 EFLEEWGTENFE 518
EFLEEW EN E
Sbjct: 543 EFLEEWSMENLE 554
>gi|241813048|ref|XP_002416483.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
gi|215510947|gb|EEC20400.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
Length = 1142
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/551 (60%), Positives = 396/551 (71%), Gaps = 37/551 (6%)
Query: 4 EEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESAD 59
EE+ EDE EE T QE W VISAYF+EKGLVRQQLDSFDEF Q ++Q IV+++
Sbjct: 5 EEDAFREDESEEITPDLWQEACWIVISAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPQ 64
Query: 60 IEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPL 112
I+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPL
Sbjct: 65 IDLQAEAQHASGEIENPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPL 124
Query: 113 YVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGY 162
YVD+TK VIK+G + E +PIMLRS+YC L + + L+EL ECP D GGY
Sbjct: 125 YVDITKTVIKEGEEPVETQHQKTFIGKIPIMLRSTYCLLNSLTDRDLSELNECPLDPGGY 184
Query: 163 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR- 221
FIINGSEKVLIAQEKM+TN VYVF+ + +K+ + AE S E +RP ST++V ML+R
Sbjct: 185 FIINGSEKVLIAQEKMATNTVYVFQMKD-SKFVFKAECRSCLEHSSRPTSTLWVNMLARG 243
Query: 222 -TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRP 280
+ + GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF+D +MME+++P
Sbjct: 244 GQGVRKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEMMEMVKP 303
Query: 281 SLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAY 336
SL+EAF IQ Q +IG RGA GVT+E+ IKY++EILQKEMLPHVG DFCETKKAY
Sbjct: 304 SLDEAFVIQEQNVALNFIGARGAHPGVTKERRIKYSREILQKEMLPHVGVSDFCETKKAY 363
Query: 337 YFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
Y G+++HRLLL ALGRR DDRDHYGNKRLDLAGPL+ LFR LFR LT +VR Y QK +
Sbjct: 364 YLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMAFLFRGLFRNLTKEVRMYAQKFI 423
Query: 397 DNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY- 454
D GKD NL+ AIK + IT GL+YSLATGNWG Q A RAGVSQVLN LTYAST ++
Sbjct: 424 DRGKDFNLELAIKTRIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTYASTLSHLR 483
Query: 455 -------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILE 507
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILE
Sbjct: 484 RVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMSYISVGSQPSPILE 543
Query: 508 FLEEWGTENFE 518
FLEEW EN E
Sbjct: 544 FLEEWSMENLE 554
>gi|194209129|ref|XP_001916826.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Equus caballus]
Length = 1174
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/550 (60%), Positives = 398/550 (72%), Gaps = 36/550 (6%)
Query: 4 EEERLEEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
E+ + +ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I
Sbjct: 6 EDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65
Query: 61 EIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLY
Sbjct: 66 DLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLY 125
Query: 114 VDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
VD+TK VIK+G + + +PIMLRS+YC L + + L EL ECP D GGYF
Sbjct: 126 VDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYF 185
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-- 221
IINGSEKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R
Sbjct: 186 IINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGG 244
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
AK + GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PS
Sbjct: 245 QGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPS 304
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+
Sbjct: 305 LDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYF 364
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D
Sbjct: 365 LGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID 424
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
GKD NLQ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 425 RGKDFNLQLAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEF
Sbjct: 485 LNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 545 LEEWSMENLE 554
>gi|324120630|dbj|BAJ78706.1| RNA polymerase II second largest subunit [Oyamia lugubris]
Length = 1175
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/552 (59%), Positives = 396/552 (71%), Gaps = 37/552 (6%)
Query: 3 MEEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
++E+ EED+ EE + QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S
Sbjct: 4 VDEDNFEEDDAEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP 63
Query: 59 DIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
I+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAP
Sbjct: 64 QIDLQAEAQHTSGEIENPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAP 123
Query: 112 LYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
LYVD+TK ++K G + E +PIMLRS+YC L + + LTEL ECP D GG
Sbjct: 124 LYVDITKTIVKDGEEPIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGG 183
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIINGSEKVLIAQEKM+TN VYVF + K+AY AE+ S E +RP ST++V M++R
Sbjct: 184 YFIINGSEKVLIAQEKMATNTVYVFSMKD-GKFAYKAEIRSCLEHSSRPTSTLWVNMMAR 242
Query: 222 --TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
S K + GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++
Sbjct: 243 GGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVK 302
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
PSL+EAF IQ Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKA
Sbjct: 303 PSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKA 362
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK
Sbjct: 363 YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKF 422
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
+D GKD NL+ AIK + IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 IDRGKDFNLELAIKTRIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHL 482
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PIL
Sbjct: 483 RRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 542
Query: 507 EFLEEWGTENFE 518
EFLEEW EN E
Sbjct: 543 EFLEEWSMENLE 554
>gi|156538773|ref|XP_001607902.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nasonia
vitripennis]
Length = 1175
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/552 (60%), Positives = 394/552 (71%), Gaps = 37/552 (6%)
Query: 3 MEEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
+EEE E+D+ EE + QE W VI+AYF+EKGLVRQQLDSFDEF + ++Q IV+ES
Sbjct: 4 LEEEHYEDDDSEEISSKVWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEESP 63
Query: 59 DIEIRPESQHNPG-------QQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
I+++ E+QH G F +IYLSKP E DG + + ARLRNLTYSAP
Sbjct: 64 QIDLQAEAQHRTGDIETPTRHLVKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAP 123
Query: 112 LYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
LYVD+TK VIK+G + E +PIMLRS YC L S + LTEL ECP D GG
Sbjct: 124 LYVDITKTVIKEGEEPTETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGG 183
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIINGSEKVLIAQEKM+TN VYVF + KYAY AE+ S E +RP ST+++ M+S+
Sbjct: 184 YFIINGSEKVLIAQEKMATNTVYVFSIKD-GKYAYKAEIRSCLEHSSRPVSTLWINMMSK 242
Query: 222 TSA--KGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
+ A K + GQ I A LPYIR EIPI+I+FRALGF AD DILEHI YDF D +MME+++
Sbjct: 243 SGAAIKKSAIGQRIIAILPYIRQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVK 302
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
PSL+EAF IQ Q +IG RGA GVT+E+ IKYA+EILQKE LPHVG DFCETKKA
Sbjct: 303 PSLDEAFVIQEQNVALNFIGSRGARPGVTKERRIKYAREILQKETLPHVGVSDFCETKKA 362
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ G+++HRLL +LGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK
Sbjct: 363 YFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKF 422
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
+D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHL 482
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLA+PRQLHN+ WGM+CPAETPEGQA GLVKNLALM YI++GS PIL
Sbjct: 483 RRVNSPIGRDGKLARPRQLHNTLWGMLCPAETPEGQAVGLVKNLALMAYISVGSQPSPIL 542
Query: 507 EFLEEWGTENFE 518
EFLEEW EN E
Sbjct: 543 EFLEEWSMENLE 554
>gi|324120640|dbj|BAJ78711.1| RNA polymerase II second largest subunit [Blattella nipponica]
Length = 1175
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/551 (60%), Positives = 396/551 (71%), Gaps = 37/551 (6%)
Query: 4 EEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESAD 59
+E++ EED+ EE + QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S
Sbjct: 5 DEDQYEEDDAEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQ 64
Query: 60 IEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPL 112
I+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPL
Sbjct: 65 IDLQAEAQHTSGEIENPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPL 124
Query: 113 YVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGY 162
YVD+TK ++K G D E +PIMLRS+YC L + + LTEL ECP D GGY
Sbjct: 125 YVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGY 184
Query: 163 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR- 221
FIINGSEKVLIAQEKM+TN VYVF + K+AY AE+ S E +RP ST++V M++R
Sbjct: 185 FIINGSEKVLIAQEKMATNTVYVFSMKD-GKFAYKAEIRSCLEHSSRPTSTLWVNMMARG 243
Query: 222 -TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRP 280
S K + GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++P
Sbjct: 244 GQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKP 303
Query: 281 SLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAY 336
SL+EAF IQ Q +IG RGA GVT+++ IKYAKEILQKEMLPHVG DFCETKKAY
Sbjct: 304 SLDEAFVIQEQNVALNFIGARGARPGVTKDRRIKYAKEILQKEMLPHVGVSDFCETKKAY 363
Query: 337 YFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +
Sbjct: 364 FLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI 423
Query: 397 DNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY- 454
D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 424 DRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHLARAGVSQVLNRLTFASTLSHLR 483
Query: 455 -------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILE 507
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILE
Sbjct: 484 RVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILE 543
Query: 508 FLEEWGTENFE 518
FLEEW EN E
Sbjct: 544 FLEEWSMENLE 554
>gi|147903615|ref|NP_001083372.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Xenopus
laevis]
gi|38014674|gb|AAH60458.1| MGC68569 protein [Xenopus laevis]
Length = 949
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/550 (59%), Positives = 399/550 (72%), Gaps = 36/550 (6%)
Query: 4 EEERLEEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
E+ + +ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I
Sbjct: 6 EDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65
Query: 61 EIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLY
Sbjct: 66 DLQAEAQHTTGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLY 125
Query: 114 VDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
VD+TK V+K+G + + +PIMLRS+YC L + + L EL ECP D GGYF
Sbjct: 126 VDITKTVVKEGEEQIQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYF 185
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-- 221
IINGSEKVLIAQEKM+TN VYVF K+ +KYAY AE S E+ +RP S+I+V ML+R
Sbjct: 186 IINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTAECRSCLENSSRPTSSIWVSMLARGG 244
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
AK + GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PS
Sbjct: 245 QGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPS 304
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+
Sbjct: 305 LDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYF 364
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D
Sbjct: 365 LGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID 424
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 425 RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEF
Sbjct: 485 LNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 545 LEEWSMENLE 554
>gi|281204919|gb|EFA79113.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 1965
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/541 (60%), Positives = 399/541 (73%), Gaps = 47/541 (8%)
Query: 3 MEEERLEED---EEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESAD 59
M + + ED E EE QE++WAVIS+YF++KGLVRQQLDSFDEF QNTMQEI+DES
Sbjct: 1 MNDYNMNEDVGGEGEEIVQEDSWAVISSYFKDKGLVRQQLDSFDEFIQNTMQEIIDESPP 60
Query: 60 IEIRPESQHNPGQQS---------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSA 110
I +RPE+QH+PGQQ F +IYLSKP +E DG T + AR+RNLTYSA
Sbjct: 61 ITLRPEAQHHPGQQQVHNFSTFSIKFGQIYLSKPT-SEIDGMTQPVTPNQARIRNLTYSA 119
Query: 111 PLYVDVTKRVIKKGHDGEE---------VPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
PLYVD+TK + K EE VPIMLRS YC L + S L +GECPYD+GG
Sbjct: 120 PLYVDITKTQVTKDRRDEEPLEKIFIGKVPIMLRSKYCMLDETSDVDLPMMGECPYDQGG 179
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIINGSEKVLIAQEKMS NHVYVFKK P+KY+YVAE+ S E+ +RP ST++V ML +
Sbjct: 180 YFIINGSEKVLIAQEKMSHNHVYVFKKTPPSKYSYVAEIRSCQETGSRPTSTMYVKML-Q 238
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
S KG I AT+PYI+ ++PI+++FRALGF AD+DILEHICYDF D QMM+L+RPS
Sbjct: 239 NSNKGPIG---IKATIPYIKQDVPIVVVFRALGFVADKDILEHICYDFSDQQMMDLMRPS 295
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
LEE+F IQNQ+ Y+GKRG+TVG TRE+ IK+A+E+LQKEMLPHV ++ ETKKAYY
Sbjct: 296 LEESFVIQNQEIALDYLGKRGSTVG-TREQRIKFAREVLQKEMLPHVSVAEYFETKKAYY 354
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
FG+I+HRLLL AL RR DDRDH+ NKRLDLAGPLLG LFR LF+KLT DVRS++Q+C+D
Sbjct: 355 FGYIVHRLLLAALERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRSHLQRCID 414
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW 457
G++ AIK+KTIT GLKYSLATGNWG N G RAGV+QVLN LT+AST ++
Sbjct: 415 KGREFIPSQAIKSKTITSGLKYSLATGNWGAAN-TGARAGVAQVLNRLTFASTLSHL--- 470
Query: 458 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
R+L+ P EGQACGLVKNLA+M YI++GSA+ PILEFLEEW TEN
Sbjct: 471 -----RRLNT-------PIGREEGQACGLVKNLAMMAYISVGSASQPILEFLEEWSTENL 518
Query: 518 E 518
E
Sbjct: 519 E 519
>gi|387018202|gb|AFJ51219.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Crotalus
adamanteus]
Length = 1167
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/545 (60%), Positives = 395/545 (72%), Gaps = 36/545 (6%)
Query: 9 EEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPE 65
+ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E
Sbjct: 4 DEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAE 63
Query: 66 SQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK 118
+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK
Sbjct: 64 AQHATGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITK 123
Query: 119 RVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGS 168
VIK+G D + +PIMLRS+YC L + + L EL ECP D GGYFIINGS
Sbjct: 124 TVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGS 183
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKG 226
EKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R AK
Sbjct: 184 EKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKK 242
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
+ GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF
Sbjct: 243 SAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAF 302
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++
Sbjct: 303 VIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMV 362
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD
Sbjct: 363 HRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDF 422
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW---- 457
NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 NLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPI 482
Query: 458 ----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW
Sbjct: 483 GRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWS 542
Query: 514 TENFE 518
EN E
Sbjct: 543 MENLE 547
>gi|324120626|dbj|BAJ78704.1| RNA polymerase II second largest subunit [Euconocephalus varius]
Length = 1175
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/552 (60%), Positives = 397/552 (71%), Gaps = 37/552 (6%)
Query: 3 MEEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
++E++ EED+ EE + QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S
Sbjct: 4 IDEDQYEEDDAEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP 63
Query: 59 DIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
I+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAP
Sbjct: 64 QIDLQAEAQHISGEIENPPHYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAP 123
Query: 112 LYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
LYVD+TK + K+G + E +PIMLRS+YC L + + LTEL ECP D GG
Sbjct: 124 LYVDITKTIEKEGEEPIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGG 183
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIINGSEKVLIAQEKM+TN VYVF + KYAY AE+ S E +RP ST++V M++R
Sbjct: 184 YFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKAEIRSCLEHSSRPTSTLWVNMMAR 242
Query: 222 --TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
S K + GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++
Sbjct: 243 GGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVK 302
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
PSL+EAF IQ Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKA
Sbjct: 303 PSLDEAFVIQEQNVALNFIGSRGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKA 362
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK
Sbjct: 363 YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKTLMKEVRMYAQKF 422
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
+D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHMARAGVSQVLNRLTFASTLSHL 482
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHNS WGM+CPAETPEG A GLVKNLALM YI++GS PIL
Sbjct: 483 RRVNSPIGRDGKLAKPRQLHNSLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 542
Query: 507 EFLEEWGTENFE 518
EFLEEW EN E
Sbjct: 543 EFLEEWSMENLE 554
>gi|301616295|ref|XP_002937598.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Xenopus
(Silurana) tropicalis]
Length = 1151
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/550 (59%), Positives = 399/550 (72%), Gaps = 36/550 (6%)
Query: 4 EEERLEEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
E+ + +ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I
Sbjct: 6 EDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65
Query: 61 EIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLY
Sbjct: 66 DLQAEAQHTTGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLY 125
Query: 114 VDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
VD+TK V+K+G + + +PIMLRS+YC L + + L EL ECP D GGYF
Sbjct: 126 VDITKTVVKEGEEQIQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYF 185
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-- 221
IINGSEKVLIAQEKM+TN VYVF K+ +KYAY AE S E+ +RP S+I+V ML+R
Sbjct: 186 IINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTAECRSCLENSSRPTSSIWVSMLARGG 244
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
AK + GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PS
Sbjct: 245 QGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPS 304
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+
Sbjct: 305 LDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYF 364
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D
Sbjct: 365 LGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID 424
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 425 RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEF
Sbjct: 485 LNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 545 LEEWSMENLE 554
>gi|449270676|gb|EMC81333.1| DNA-directed RNA polymerase II subunit RPB2, partial [Columba
livia]
Length = 1168
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/545 (60%), Positives = 395/545 (72%), Gaps = 36/545 (6%)
Query: 9 EEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPE 65
+ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E
Sbjct: 5 DEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAE 64
Query: 66 SQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK 118
+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK
Sbjct: 65 AQHATGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITK 124
Query: 119 RVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGS 168
VIK+G D + +PIMLRS+YC L + + L EL ECP D GGYFIINGS
Sbjct: 125 TVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGS 184
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKG 226
EKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R AK
Sbjct: 185 EKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKK 243
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
+ GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF
Sbjct: 244 SAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAF 303
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++
Sbjct: 304 VIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMV 363
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD
Sbjct: 364 HRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDF 423
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW---- 457
NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 424 NLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPI 483
Query: 458 ----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW
Sbjct: 484 GRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWS 543
Query: 514 TENFE 518
EN E
Sbjct: 544 MENLE 548
>gi|194379208|dbj|BAG58155.1| unnamed protein product [Homo sapiens]
Length = 1167
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/545 (60%), Positives = 395/545 (72%), Gaps = 36/545 (6%)
Query: 9 EEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPE 65
+ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E
Sbjct: 4 DEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAE 63
Query: 66 SQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK 118
+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK
Sbjct: 64 AQHASGEVEEPPRYLLKFEQIYLSKPTHRERDGAPSPMMPNEARLRNLTYSAPLYVDITK 123
Query: 119 RVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGS 168
VIK+G + + +PIMLRS+YC L + + L EL ECP D GGYFIINGS
Sbjct: 124 TVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGS 183
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKG 226
EKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R AK
Sbjct: 184 EKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKK 242
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
+ GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF
Sbjct: 243 SAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAF 302
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++
Sbjct: 303 VIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMV 362
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD
Sbjct: 363 HRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDF 422
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW---- 457
NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 NLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPI 482
Query: 458 ----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW
Sbjct: 483 GRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWS 542
Query: 514 TENFE 518
EN E
Sbjct: 543 MENLE 547
>gi|226958589|ref|NP_722493.2| DNA-directed RNA polymerase II subunit RPB2 [Mus musculus]
gi|51702009|sp|Q8CFI7.2|RPB2_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
AltName: Full=DNA-directed RNA polymerase II subunit B;
AltName: Full=RNA polymerase II subunit 2; AltName:
Full=RNA polymerase II subunit B2
gi|148705989|gb|EDL37936.1| polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
Length = 1174
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/550 (60%), Positives = 398/550 (72%), Gaps = 36/550 (6%)
Query: 4 EEERLEEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
E+ + +ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I
Sbjct: 6 EDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65
Query: 61 EIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLY
Sbjct: 66 DLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLY 125
Query: 114 VDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
VD+TK VIK+G + + +PIMLRS+YC L + + L EL ECP D GGYF
Sbjct: 126 VDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYF 185
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-- 221
IINGSEKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R
Sbjct: 186 IINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGG 244
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
AK + GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PS
Sbjct: 245 QGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPS 304
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+
Sbjct: 305 LDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYF 364
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D
Sbjct: 365 LGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID 424
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 425 RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEF
Sbjct: 485 LNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 545 LEEWSMENLE 554
>gi|324120680|dbj|BAJ78731.1| RNA polymerase II second largest subunit [Ctenocephalides felis]
Length = 1175
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/552 (59%), Positives = 396/552 (71%), Gaps = 37/552 (6%)
Query: 3 MEEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
++EE+ ED+EEE + QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S
Sbjct: 4 VDEEQYREDDEEEISTELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP 63
Query: 59 DIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
I+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAP
Sbjct: 64 AIDLQAEAQHTSGEIENPPRYVLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAP 123
Query: 112 LYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
LYVD+TK +I G D E +PIMLRS+YC L + + LTEL ECP D GG
Sbjct: 124 LYVDITKTIIMDGKDPVETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGG 183
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIINGSEKVLIAQEKM+TN VYVF + K+A+ AE+ S E +RP ST++V M++R
Sbjct: 184 YFIINGSEKVLIAQEKMATNTVYVFSMKD-GKFAFKAEIRSCLEHSSRPTSTLWVNMMAR 242
Query: 222 --TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
S K + GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++
Sbjct: 243 GGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDQEMMEMVK 302
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
PSL+EAF +Q Q +IG RGA GVT++K IKYA+EILQKEMLPHVG DFCETKKA
Sbjct: 303 PSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAREILQKEMLPHVGVSDFCETKKA 362
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK
Sbjct: 363 YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKF 422
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
+D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHL 482
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PIL
Sbjct: 483 RRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 542
Query: 507 EFLEEWGTENFE 518
EFLEEW EN E
Sbjct: 543 EFLEEWSMENLE 554
>gi|4505941|ref|NP_000929.1| DNA-directed RNA polymerase II subunit RPB2 [Homo sapiens]
gi|157822127|ref|NP_001099472.1| DNA-directed RNA polymerase II subunit RPB2 [Rattus norvegicus]
gi|387849108|ref|NP_001248426.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|114594586|ref|XP_517275.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Pan troglodytes]
gi|296196473|ref|XP_002745851.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Callithrix
jacchus]
gi|297673513|ref|XP_002814803.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 4
[Pongo abelii]
gi|332238537|ref|XP_003268457.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nomascus
leucogenys]
gi|348571889|ref|XP_003471727.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cavia
porcellus]
gi|354498860|ref|XP_003511530.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Cricetulus griseus]
gi|395851369|ref|XP_003798233.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Otolemur garnettii]
gi|402869719|ref|XP_003898895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Papio anubis]
gi|401012|sp|P30876.1|RPB2_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
AltName: Full=DNA-directed RNA polymerase II subunit B;
AltName: Full=RNA polymerase II subunit 2; AltName:
Full=RNA polymerase II subunit B2
gi|36122|emb|CAA45124.1| RNA polymerase II 140 kDa subunit [Homo sapiens]
gi|254869|gb|AAB23139.1| RNA polymerase II second largest subunit, RNA polymerase B second
largest subunit [human, HeLa cells, Peptide, 1174 aa]
gi|33870592|gb|AAH23503.2| Polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
sapiens]
gi|119625924|gb|EAX05519.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
sapiens]
gi|149035168|gb|EDL89872.1| polymerase (RNA) II (DNA directed) polypeptide B (predicted)
[Rattus norvegicus]
gi|158260669|dbj|BAF82512.1| unnamed protein product [Homo sapiens]
gi|168277428|dbj|BAG10692.1| DNA-directed RNA polymerase II subunit RPB2 [synthetic construct]
gi|355749385|gb|EHH53784.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca fascicularis]
gi|380783295|gb|AFE63523.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|383413177|gb|AFH29802.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|384941246|gb|AFI34228.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|410224966|gb|JAA09702.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410261216|gb|JAA18574.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410306896|gb|JAA32048.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410306898|gb|JAA32049.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410306900|gb|JAA32050.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410350135|gb|JAA41671.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
Length = 1174
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/550 (60%), Positives = 398/550 (72%), Gaps = 36/550 (6%)
Query: 4 EEERLEEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
E+ + +ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I
Sbjct: 6 EDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65
Query: 61 EIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLY
Sbjct: 66 DLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLY 125
Query: 114 VDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
VD+TK VIK+G + + +PIMLRS+YC L + + L EL ECP D GGYF
Sbjct: 126 VDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYF 185
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-- 221
IINGSEKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R
Sbjct: 186 IINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGG 244
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
AK + GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PS
Sbjct: 245 QGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPS 304
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+
Sbjct: 305 LDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYF 364
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D
Sbjct: 365 LGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID 424
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 425 RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEF
Sbjct: 485 LNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 545 LEEWSMENLE 554
>gi|355687402|gb|EHH25986.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
Length = 1174
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/550 (60%), Positives = 398/550 (72%), Gaps = 36/550 (6%)
Query: 4 EEERLEEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
E+ + +ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I
Sbjct: 6 EDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65
Query: 61 EIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLY
Sbjct: 66 DLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLY 125
Query: 114 VDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
VD+TK VIK+G + + +PIMLRS+YC L + + L EL ECP D GGYF
Sbjct: 126 VDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYF 185
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-- 221
IINGSEKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R
Sbjct: 186 IINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGG 244
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
AK + GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PS
Sbjct: 245 QGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPS 304
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+
Sbjct: 305 LDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYF 364
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D
Sbjct: 365 LGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID 424
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 425 RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEF
Sbjct: 485 LNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 545 LEEWSMENLE 554
>gi|324120608|dbj|BAJ78695.1| RNA polymerase II second largest subunit [Epiophlebia superstes]
Length = 1175
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/552 (59%), Positives = 397/552 (71%), Gaps = 37/552 (6%)
Query: 3 MEEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
++EE+ EED+ EE + QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S
Sbjct: 4 LDEEQYEEDDGEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP 63
Query: 59 DIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
I+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAP
Sbjct: 64 QIDLQAEAQHTSGEIENPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAP 123
Query: 112 LYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
LYVD+TK V K+G + E +PIMLRS+YC L + + LTEL ECP D GG
Sbjct: 124 LYVDITKTVAKEGEEPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGG 183
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIINGSEKVLIAQEKM+TN VYVF + K+A+ AE+ S E +RP ST++V M++R
Sbjct: 184 YFIINGSEKVLIAQEKMATNTVYVFSMKD-GKFAFKAEIRSCLEHSSRPTSTLWVNMMAR 242
Query: 222 T--SAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
S K + GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++
Sbjct: 243 CGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVK 302
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
PSL+EAF IQ Q +IG RGA GVT+EK +KYA+EILQKEMLPHVG DFCETKKA
Sbjct: 303 PSLDEAFVIQEQNVALNFIGARGARPGVTKEKRVKYAREILQKEMLPHVGVSDFCETKKA 362
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK
Sbjct: 363 YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKF 422
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
+D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHL 482
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PIL
Sbjct: 483 RRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 542
Query: 507 EFLEEWGTENFE 518
EFLEEW EN E
Sbjct: 543 EFLEEWSMENLE 554
>gi|126331583|ref|XP_001362455.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Monodelphis
domestica]
gi|395542735|ref|XP_003773281.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sarcophilus
harrisii]
Length = 1174
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/550 (60%), Positives = 398/550 (72%), Gaps = 36/550 (6%)
Query: 4 EEERLEEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
E+ + +ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I
Sbjct: 6 EDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65
Query: 61 EIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLY
Sbjct: 66 DLQAEAQHATGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLY 125
Query: 114 VDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
VD+TK VIK+G + + +PIMLRS+YC L + + L EL ECP D GGYF
Sbjct: 126 VDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYF 185
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-- 221
IINGSEKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R
Sbjct: 186 IINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGG 244
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
AK + GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PS
Sbjct: 245 QGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPS 304
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+
Sbjct: 305 LDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYF 364
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D
Sbjct: 365 LGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID 424
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 425 RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEF
Sbjct: 485 LNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 545 LEEWSMENLE 554
>gi|312381454|gb|EFR27200.1| hypothetical protein AND_06234 [Anopheles darlingi]
Length = 1954
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/551 (59%), Positives = 394/551 (71%), Gaps = 37/551 (6%)
Query: 4 EEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESAD 59
E++ EE++ EE + QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S
Sbjct: 5 EDDHFEEEDPEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPA 64
Query: 60 IEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPL 112
IE+ E+QH+ G+ + F +IYLSKP E DG + + ARLRNLTYSAPL
Sbjct: 65 IELTAEAQHSSGEIENPTRYLLKFDQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPL 124
Query: 113 YVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGY 162
YVD+TK I +G D E +PIMLRS+YC L Q + + LTEL ECP D GGY
Sbjct: 125 YVDITKTKIVEGQDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGY 184
Query: 163 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR- 221
FIINGSEKVLIAQEKM+TN VYVF + KYAY E+ S E +RP ST++V M++R
Sbjct: 185 FIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKTEIRSCLEHSSRPTSTLWVNMMARG 243
Query: 222 -TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRP 280
S K + GQ + A LPY++ EIPI+I+FRALGF AD DILEHI YDF D +MME+++P
Sbjct: 244 GQSIKKSAIGQRVIAILPYVKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKP 303
Query: 281 SLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAY 336
SL+EAF +Q Q +IG RGA GVT++K IKYAKEILQKEMLPHVG DFCETKKAY
Sbjct: 304 SLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAY 363
Query: 337 YFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +
Sbjct: 364 FLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI 423
Query: 397 DNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY- 454
D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 424 DRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLR 483
Query: 455 -------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILE 507
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILE
Sbjct: 484 RVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILE 543
Query: 508 FLEEWGTENFE 518
FLEEW EN E
Sbjct: 544 FLEEWSMENLE 554
>gi|327279896|ref|XP_003224691.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Anolis
carolinensis]
Length = 1174
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/550 (59%), Positives = 398/550 (72%), Gaps = 36/550 (6%)
Query: 4 EEERLEEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
E+ + +ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I
Sbjct: 6 EDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65
Query: 61 EIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLY
Sbjct: 66 DLQAEAQHATGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLY 125
Query: 114 VDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
VD+TK V+K+G D + +PIMLRS+YC L + + L +L ECP D GGYF
Sbjct: 126 VDITKTVVKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCQLNECPLDPGGYF 185
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-- 221
IINGSEKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R
Sbjct: 186 IINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGG 244
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
AK + GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PS
Sbjct: 245 QGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPS 304
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+
Sbjct: 305 LDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYF 364
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D
Sbjct: 365 LGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID 424
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 425 RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEF
Sbjct: 485 LNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 545 LEEWSMENLE 554
>gi|324120610|dbj|BAJ78696.1| RNA polymerase II second largest subunit [Mnais pruinosa pruinosa]
Length = 1175
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/552 (59%), Positives = 397/552 (71%), Gaps = 37/552 (6%)
Query: 3 MEEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
++EE+ EED+ EE + QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S
Sbjct: 4 LDEEQYEEDDGEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP 63
Query: 59 DIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
I+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAP
Sbjct: 64 QIDLQAEAQHTSGEIENPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAP 123
Query: 112 LYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
LYVD+TK V K+G + E +PIMLRS+YC L + + LTEL ECP D GG
Sbjct: 124 LYVDITKTVAKEGEEPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGG 183
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIINGSEKVLIAQEKM+TN VYVF + K+A+ AE+ S E +RP ST++V M++R
Sbjct: 184 YFIINGSEKVLIAQEKMATNTVYVFSMKD-GKFAFKAEIRSCLEHSSRPTSTLWVNMMAR 242
Query: 222 --TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
S K + GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++
Sbjct: 243 GGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVK 302
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
PSL+EAF IQ Q +IG RGA GVT+EK +KYA+EILQKEMLPHVG DFCETKKA
Sbjct: 303 PSLDEAFVIQEQNVALNFIGARGARPGVTKEKRVKYAREILQKEMLPHVGVSDFCETKKA 362
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK
Sbjct: 363 YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKF 422
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
+D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHL 482
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PIL
Sbjct: 483 RRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 542
Query: 507 EFLEEWGTENFE 518
EFLEEW EN E
Sbjct: 543 EFLEEWSMENLE 554
>gi|57530101|ref|NP_001006448.1| DNA-directed RNA polymerase II subunit RPB2 [Gallus gallus]
gi|53127025|emb|CAG31004.1| hypothetical protein RCJMB04_1i14 [Gallus gallus]
Length = 1174
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/550 (60%), Positives = 398/550 (72%), Gaps = 36/550 (6%)
Query: 4 EEERLEEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
E+ + +ED++E T QE W VIS+YF+E+GLVRQQLDSFDEF Q ++Q IV+++ I
Sbjct: 6 EDMQYDEDDDEITPDLWQEARWIVISSYFDEEGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65
Query: 61 EIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLY
Sbjct: 66 DLQAEAQHATGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLY 125
Query: 114 VDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
VD+TK VIK+G D + +PIMLRS+YC L + + L EL ECP D GGYF
Sbjct: 126 VDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYF 185
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-- 221
IINGSEKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R
Sbjct: 186 IINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGG 244
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
AK + GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PS
Sbjct: 245 QGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPS 304
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+
Sbjct: 305 LDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYF 364
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D
Sbjct: 365 LGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID 424
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 425 RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEF
Sbjct: 485 LNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 545 LEEWSMENLE 554
>gi|154707850|ref|NP_001092552.1| DNA-directed RNA polymerase II subunit RPB2 [Bos taurus]
gi|73975053|ref|XP_532382.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Canis lupus familiaris]
gi|301765482|ref|XP_002918158.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Ailuropoda melanoleuca]
gi|410957577|ref|XP_003985402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Felis catus]
gi|426231739|ref|XP_004009895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Ovis aries]
gi|148744083|gb|AAI42268.1| POLR2B protein [Bos taurus]
gi|296486557|tpg|DAA28670.1| TPA: DNA directed RNA polymerase II polypeptide B [Bos taurus]
Length = 1174
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/550 (60%), Positives = 398/550 (72%), Gaps = 36/550 (6%)
Query: 4 EEERLEEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
E+ + +ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I
Sbjct: 6 EDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65
Query: 61 EIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLY
Sbjct: 66 DLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLY 125
Query: 114 VDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
VD+TK VIK+G + + +PIMLRS+YC L + + L EL ECP D GGYF
Sbjct: 126 VDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYF 185
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-- 221
IINGSEKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R
Sbjct: 186 IINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGG 244
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
AK + GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PS
Sbjct: 245 QGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPS 304
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+
Sbjct: 305 LDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYF 364
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D
Sbjct: 365 LGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID 424
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 425 RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEF
Sbjct: 485 LNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 545 LEEWSMENLE 554
>gi|291401757|ref|XP_002717206.1| PREDICTED: DNA directed RNA polymerase II polypeptide B
[Oryctolagus cuniculus]
Length = 1174
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/550 (60%), Positives = 398/550 (72%), Gaps = 36/550 (6%)
Query: 4 EEERLEEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
E+ + +ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I
Sbjct: 6 EDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65
Query: 61 EIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLY
Sbjct: 66 DLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLY 125
Query: 114 VDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
VD+TK VIK+G + + +PIMLRS+YC L + + L EL ECP D GGYF
Sbjct: 126 VDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYF 185
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-- 221
IINGSEKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R
Sbjct: 186 IINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGG 244
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
AK + GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PS
Sbjct: 245 QGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPS 304
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+
Sbjct: 305 LDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYF 364
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D
Sbjct: 365 LGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID 424
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 425 RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEF
Sbjct: 485 LNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 545 LEEWSMENLE 554
>gi|324120612|dbj|BAJ78697.1| RNA polymerase II second largest subunit [Ephemera japonica]
Length = 1179
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/553 (60%), Positives = 395/553 (71%), Gaps = 38/553 (6%)
Query: 3 MEEERLE--EDEEE---ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDES 57
M+EE L+ ED+EE E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S
Sbjct: 7 MDEEPLDDQEDKEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDS 66
Query: 58 ADIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSA 110
I+++ E+QH G+ F +IYLSKP E DG + ARLRNLTYSA
Sbjct: 67 PQIDLQAEAQHTSGEIESPPKYFLKFEQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSA 126
Query: 111 PLYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEG 160
PLYVD+TK V+K G + E +PIMLRS+YC L S + LTEL ECP D G
Sbjct: 127 PLYVDITKLVVKDGENTVETQHQKTFIGKIPIMLRSTYCLLSGLSDRDLTELNECPLDPG 186
Query: 161 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLS 220
GYFIINGSEKVLIAQEKM+TN VYVF + K+AY AE+ S E +RP ST++V M++
Sbjct: 187 GYFIINGSEKVLIAQEKMATNTVYVFAMKD-GKFAYKAEIRSCQEHSSRPTSTLWVNMMA 245
Query: 221 RT--SAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
R+ S K + GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME++
Sbjct: 246 RSGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMV 305
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
+PSL+EAF IQ Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKK
Sbjct: 306 KPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKK 365
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
AY+ G+++HRLLL AL RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK
Sbjct: 366 AYFLGYMVHRLLLAALSRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQK 425
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTY 453
+D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 426 FIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSH 485
Query: 454 Y--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PI
Sbjct: 486 LRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPI 545
Query: 506 LEFLEEWGTENFE 518
LEFLEEW EN E
Sbjct: 546 LEFLEEWSMENLE 558
>gi|345319345|ref|XP_001521110.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2, partial
[Ornithorhynchus anatinus]
Length = 951
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/550 (60%), Positives = 398/550 (72%), Gaps = 36/550 (6%)
Query: 4 EEERLEEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
E+ + +ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I
Sbjct: 6 EDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65
Query: 61 EIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLY
Sbjct: 66 DLQAEAQHATGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLY 125
Query: 114 VDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
VD+TK VIK+G + + +PIMLRS+YC L + + L EL ECP D GGYF
Sbjct: 126 VDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYF 185
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-- 221
IINGSEKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R
Sbjct: 186 IINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGG 244
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
AK + GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PS
Sbjct: 245 QGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPS 304
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+
Sbjct: 305 LDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYF 364
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D
Sbjct: 365 LGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID 424
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 425 RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEF
Sbjct: 485 LNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 545 LEEWSMENLE 554
>gi|427798029|gb|JAA64466.1| Putative rna polymerase i second largest subunit, partial
[Rhipicephalus pulchellus]
Length = 1149
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/552 (60%), Positives = 395/552 (71%), Gaps = 38/552 (6%)
Query: 4 EEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESAD 59
EE+ EDE EE T QE W VISAYF+EKGLVRQQLDSFDEF Q ++Q IV+++
Sbjct: 5 EEDGFGEDESEEITPDLWQEACWIVISAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPQ 64
Query: 60 IEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPL 112
I+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPL
Sbjct: 65 IDLQAEAQHTSGEIENPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPL 124
Query: 113 YVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGY 162
YVD+TK V+K+ + E +PIMLRS+YC L + + L+EL ECP D GGY
Sbjct: 125 YVDITKTVLKENEEAVETQHQKTFIGKIPIMLRSTYCLLNNLTDRDLSELNECPLDPGGY 184
Query: 163 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR- 221
FIINGSEKVLIAQEKM+TN VYVF+ + +KYAY AE S E +RP ST++V ML+R
Sbjct: 185 FIINGSEKVLIAQEKMATNTVYVFQMKD-SKYAYKAECRSCLEHSSRPTSTLWVNMLARG 243
Query: 222 -TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRP 280
+ + GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF+D +MME+++P
Sbjct: 244 GQGVRKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEMMEMVKP 303
Query: 281 SLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAY 336
SL+EAF IQ Q +IG RGA GVT+EK IKY+KEILQKEMLPHVG DFCETKKAY
Sbjct: 304 SLDEAFVIQEQNVALNFIGSRGARPGVTKEKRIKYSKEILQKEMLPHVGVSDFCETKKAY 363
Query: 337 YFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
Y G+++HRLLL ALGRR DDRDHYGNKRLDLAGPL+ LFR LFR LT +VR Y QK +
Sbjct: 364 YLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMAFLFRGLFRNLTKEVRMYAQKFI 423
Query: 397 DNGKDVNLQFAIKA-KTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
D GKD NL+ AIK IT GL+YSLATGNWG Q A RAGVSQVLN LTYAST ++
Sbjct: 424 DRGKDFNLELAIKTXXXITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTYASTLSHL 483
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PIL
Sbjct: 484 RRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMSYISVGSQPSPIL 543
Query: 507 EFLEEWGTENFE 518
EFLEEW EN E
Sbjct: 544 EFLEEWSMENLE 555
>gi|297673503|ref|XP_002814800.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Pongo abelii]
gi|410038417|ref|XP_003950400.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
troglodytes]
Length = 1167
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/545 (60%), Positives = 395/545 (72%), Gaps = 36/545 (6%)
Query: 9 EEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPE 65
+ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E
Sbjct: 4 DEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAE 63
Query: 66 SQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK 118
+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK
Sbjct: 64 AQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITK 123
Query: 119 RVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGS 168
VIK+G + + +PIMLRS+YC L + + L EL ECP D GGYFIINGS
Sbjct: 124 TVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGS 183
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKG 226
EKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R AK
Sbjct: 184 EKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKK 242
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
+ GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF
Sbjct: 243 SAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAF 302
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++
Sbjct: 303 VIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMV 362
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD
Sbjct: 363 HRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDF 422
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW---- 457
NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 NLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPI 482
Query: 458 ----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW
Sbjct: 483 GRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWS 542
Query: 514 TENFE 518
EN E
Sbjct: 543 MENLE 547
>gi|23512288|gb|AAH38472.1| Polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
Length = 1167
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/545 (60%), Positives = 395/545 (72%), Gaps = 36/545 (6%)
Query: 9 EEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPE 65
+ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E
Sbjct: 4 DEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAE 63
Query: 66 SQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK 118
+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK
Sbjct: 64 AQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITK 123
Query: 119 RVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGS 168
VIK+G + + +PIMLRS+YC L + + L EL ECP D GGYFIINGS
Sbjct: 124 TVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGS 183
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKG 226
EKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R AK
Sbjct: 184 EKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKK 242
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
+ GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF
Sbjct: 243 SAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAF 302
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++
Sbjct: 303 VIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMV 362
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD
Sbjct: 363 HRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDF 422
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW---- 457
NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 NLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPI 482
Query: 458 ----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW
Sbjct: 483 GRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWS 542
Query: 514 TENFE 518
EN E
Sbjct: 543 MENLE 547
>gi|281352499|gb|EFB28083.1| hypothetical protein PANDA_006563 [Ailuropoda melanoleuca]
Length = 1168
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/545 (60%), Positives = 395/545 (72%), Gaps = 36/545 (6%)
Query: 9 EEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPE 65
+ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E
Sbjct: 5 DEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAE 64
Query: 66 SQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK 118
+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK
Sbjct: 65 AQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITK 124
Query: 119 RVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGS 168
VIK+G + + +PIMLRS+YC L + + L EL ECP D GGYFIINGS
Sbjct: 125 TVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGS 184
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKG 226
EKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R AK
Sbjct: 185 EKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKK 243
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
+ GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF
Sbjct: 244 SAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAF 303
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++
Sbjct: 304 VIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMV 363
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD
Sbjct: 364 HRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDF 423
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW---- 457
NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 424 NLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPI 483
Query: 458 ----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW
Sbjct: 484 GRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWS 543
Query: 514 TENFE 518
EN E
Sbjct: 544 MENLE 548
>gi|335293559|ref|XP_003129085.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sus scrofa]
Length = 1167
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/545 (60%), Positives = 395/545 (72%), Gaps = 36/545 (6%)
Query: 9 EEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPE 65
+ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E
Sbjct: 4 DEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAE 63
Query: 66 SQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK 118
+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK
Sbjct: 64 AQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITK 123
Query: 119 RVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGS 168
VIK+G + + +PIMLRS+YC L + + L EL ECP D GGYFIINGS
Sbjct: 124 TVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGS 183
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKG 226
EKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R AK
Sbjct: 184 EKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKK 242
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
+ GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF
Sbjct: 243 SAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAF 302
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++
Sbjct: 303 VIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMV 362
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD
Sbjct: 363 HRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDF 422
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW---- 457
NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 NLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPI 482
Query: 458 ----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW
Sbjct: 483 GRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWS 542
Query: 514 TENFE 518
EN E
Sbjct: 543 MENLE 547
>gi|443726751|gb|ELU13810.1| hypothetical protein CAPTEDRAFT_172112 [Capitella teleta]
Length = 1174
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/541 (60%), Positives = 389/541 (71%), Gaps = 33/541 (6%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
ED + QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E+QH
Sbjct: 17 EDISSDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPQIDLQAEAQHT 76
Query: 70 PGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
G F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +IK
Sbjct: 77 SGTVETPPRYLIKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTLIK 136
Query: 123 KGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVL 172
+G D E VPIMLRS+YC L + + LTEL ECP D GGYFIINGSEKVL
Sbjct: 137 EGDDPIEALSQKTFVGKVPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVL 196
Query: 173 IAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSG 230
IAQEKM+TN VYVF +++ +KYAY E+ S E +RP ST+++ M++R + + G
Sbjct: 197 IAQEKMATNTVYVFSQKE-SKYAYKTEIRSCLEHSSRPTSTLWINMMARGGHGVRKNAIG 255
Query: 231 QYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQN 290
Q I A LPYIR EIP+II+FRALGF +D DILEHI YDF D +MME+++PSL+EAF +Q
Sbjct: 256 QRIIAILPYIRQEIPVIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQE 315
Query: 291 QQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLL 346
Q +IG RGA GVT+EK IKYAKEILQKEMLPHVG DFCETKKAY+ G+I+HRLL
Sbjct: 316 QNVALNFIGARGARPGVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYIVHRLL 375
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQF 406
L ALGRR DDRDHYGNKRLDLAGPLL LFR LFR LT +VR + QK +D GKD NL+
Sbjct: 376 LAALGRRECDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEVRLFSQKFIDQGKDFNLEL 435
Query: 407 AIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW-------- 457
AI+ +TIT GLKYSLATGNWG Q A RAGVSQVLN LT+ ST ++
Sbjct: 436 AIRTRTITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFVSTLSHLRRLNSPVGRDG 495
Query: 458 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
KLA+PRQLHN+QWGM+CPAETPEG GLVKNLALM YI++GS PILEFLEEW EN
Sbjct: 496 KLARPRQLHNTQWGMICPAETPEGSCVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 555
Query: 518 E 518
E
Sbjct: 556 E 556
>gi|348542471|ref|XP_003458708.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Oreochromis
niloticus]
Length = 1174
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/550 (59%), Positives = 396/550 (72%), Gaps = 36/550 (6%)
Query: 4 EEERLEEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
E+ + +ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I
Sbjct: 6 EDNQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65
Query: 61 EIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLY
Sbjct: 66 DLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLY 125
Query: 114 VDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
VD+TK +IK+G D + +PIMLRS+YC L + + L EL ECP D GGYF
Sbjct: 126 VDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYF 185
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-- 221
IINGSEKVLIAQEKM+TN VYVF K+ +KYAY AE S E+ +RP STI+V M++R
Sbjct: 186 IINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTAECRSCLENSSRPTSTIWVSMMARGG 244
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
K + GQ I +TLPYIR E+PIII+FRALGF +D DILEHI YDF D +MME+++PS
Sbjct: 245 QGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPS 304
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+E+ IKYAKE+LQKEMLPHVG DFCETKKAY+
Sbjct: 305 LDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETKKAYF 364
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L ++R Y QK +D
Sbjct: 365 LGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFID 424
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWGQ-GNAAGTRAGVSQVLNCLTYASTFTYY-- 454
GKD NL+ AIK + I+ GLKYSLATGNWG A RAGVSQVLN LT+AST ++
Sbjct: 425 RGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 455 ------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEF
Sbjct: 485 VNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 545 LEEWSMENLE 554
>gi|440903358|gb|ELR54029.1| DNA-directed RNA polymerase II subunit RPB2 [Bos grunniens mutus]
Length = 1175
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/545 (60%), Positives = 395/545 (72%), Gaps = 36/545 (6%)
Query: 9 EEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPE 65
+ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E
Sbjct: 12 DEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAE 71
Query: 66 SQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK 118
+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK
Sbjct: 72 AQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITK 131
Query: 119 RVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGS 168
VIK+G + + +PIMLRS+YC L + + L EL ECP D GGYFIINGS
Sbjct: 132 TVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGS 191
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKG 226
EKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R AK
Sbjct: 192 EKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKK 250
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
+ GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF
Sbjct: 251 SAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAF 310
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++
Sbjct: 311 VIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMV 370
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD
Sbjct: 371 HRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDF 430
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW---- 457
NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 431 NLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPI 490
Query: 458 ----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW
Sbjct: 491 GRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWS 550
Query: 514 TENFE 518
EN E
Sbjct: 551 MENLE 555
>gi|431893877|gb|ELK03694.1| DNA-directed RNA polymerase II subunit RPB2 [Pteropus alecto]
Length = 1167
Score = 639 bits (1648), Expect = e-180, Method: Compositional matrix adjust.
Identities = 329/545 (60%), Positives = 394/545 (72%), Gaps = 36/545 (6%)
Query: 9 EEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPE 65
+ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E
Sbjct: 4 DEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAE 63
Query: 66 SQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK 118
+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK
Sbjct: 64 AQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITK 123
Query: 119 RVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGS 168
VIK+G + + +PIMLRS+YC L + + L EL ECP D GGYFIINGS
Sbjct: 124 TVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGS 183
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKG 226
EKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R AK
Sbjct: 184 EKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKK 242
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
+ GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF
Sbjct: 243 SAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAF 302
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++
Sbjct: 303 VIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMV 362
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD
Sbjct: 363 HRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDF 422
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW---- 457
NL+ AI K I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 NLELAINTKIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPI 482
Query: 458 ----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW
Sbjct: 483 GRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWS 542
Query: 514 TENFE 518
EN E
Sbjct: 543 MENLE 547
>gi|291241363|ref|XP_002740582.1| PREDICTED: DNA directed RNA polymerase II polypeptide B-like
[Saccoglossus kowalevskii]
Length = 1175
Score = 639 bits (1648), Expect = e-180, Method: Compositional matrix adjust.
Identities = 329/551 (59%), Positives = 394/551 (71%), Gaps = 37/551 (6%)
Query: 4 EEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESAD 59
E+E +EDE +E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV++S
Sbjct: 5 EDEIYDEDESDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPP 64
Query: 60 IEIRPESQHNPGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPL 112
IE++ E+ H + F +IYLSKP E DG + + ARLRNLTYSAPL
Sbjct: 65 IELQAEATHTTIEVEVPTRYILKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPL 124
Query: 113 YVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGY 162
YVD+TK ++K+G + +E +PIMLRS+YC L + + LTEL ECP D GGY
Sbjct: 125 YVDITKTIVKEGDEPQETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGY 184
Query: 163 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR- 221
FIINGSEKVLIAQEKM+TN VYVF K+ +KYAY E S E +RP ST++V M++R
Sbjct: 185 FIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLEHSSRPTSTLWVHMMARG 243
Query: 222 -TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRP 280
+ + GQ I A LPYIR EIPI+I+FRALGF +D DILEHI YDF D +MME+++P
Sbjct: 244 GQGVRKSAIGQRIVAALPYIRQEIPIMIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKP 303
Query: 281 SLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAY 336
SL+EAF IQ Q +IG RGA GVT+E+ IKYA+EILQKEMLPHVG DFCETKKAY
Sbjct: 304 SLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAY 363
Query: 337 YFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +
Sbjct: 364 FLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRHLFKNLMKEVRIYAQKFI 423
Query: 397 DNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL 455
D GKD NL+ AIK + IT GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 424 DKGKDFNLELAIKTRIITDGLKYSLATGNWGEQKKAHQARAGVSQVLNRLTFASTLSHLR 483
Query: 456 SW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILE 507
KLA+PRQLHN+ WGM+CPAETPEGQA GLVKNLALM YI++GS PILE
Sbjct: 484 RLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGQAVGLVKNLALMAYISVGSQPSPILE 543
Query: 508 FLEEWGTENFE 518
FLEEW EN E
Sbjct: 544 FLEEWSMENLE 554
>gi|397469837|ref|XP_003806546.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
paniscus]
Length = 1226
Score = 639 bits (1648), Expect = e-180, Method: Compositional matrix adjust.
Identities = 329/545 (60%), Positives = 395/545 (72%), Gaps = 36/545 (6%)
Query: 9 EEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPE 65
+ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E
Sbjct: 63 DEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAE 122
Query: 66 SQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK 118
+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK
Sbjct: 123 AQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITK 182
Query: 119 RVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGS 168
VIK+G + + +PIMLRS+YC L + + L EL ECP D GGYFIINGS
Sbjct: 183 TVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGS 242
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKG 226
EKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R AK
Sbjct: 243 EKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKK 301
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
+ GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF
Sbjct: 302 SAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAF 361
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++
Sbjct: 362 VIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMV 421
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD
Sbjct: 422 HRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDF 481
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW---- 457
NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 482 NLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPI 541
Query: 458 ----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW
Sbjct: 542 GRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWS 601
Query: 514 TENFE 518
EN E
Sbjct: 602 MENLE 606
>gi|432961296|ref|XP_004086596.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Oryzias latipes]
Length = 1120
Score = 639 bits (1647), Expect = e-180, Method: Compositional matrix adjust.
Identities = 326/550 (59%), Positives = 395/550 (71%), Gaps = 36/550 (6%)
Query: 4 EEERLEEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
E+ + +ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I
Sbjct: 6 EDNQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65
Query: 61 EIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLY
Sbjct: 66 DLQAEAQHTSGEVEEPPRFLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLY 125
Query: 114 VDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
VD+TK +IK+G D + +PIMLRS+YC L + + L EL ECP D GGYF
Sbjct: 126 VDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYF 185
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-- 221
IINGSEKVLIAQEKM+TN VYVF K+ +KYAY AE S E +RP STI+V M++R
Sbjct: 186 IINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTAECRSCLEXSSRPTSTIWVSMMARGG 244
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
K + GQ I +TLPYIR E+PIII+FRALGF +D DILEHI YDF D +MME+++PS
Sbjct: 245 QGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPS 304
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+E+ IKYAKE+LQKEMLPHVG DFCETKKAY+
Sbjct: 305 LDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETKKAYF 364
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L ++R Y QK +D
Sbjct: 365 LGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFID 424
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWGQ-GNAAGTRAGVSQVLNCLTYASTFTYY-- 454
GKD NL+ AIK + I+ GLKYSLATGNWG A RAGVSQVLN LT+AST ++
Sbjct: 425 RGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 455 ------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEF
Sbjct: 485 VNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 545 LEEWSMENLE 554
>gi|198418494|ref|XP_002128916.1| PREDICTED: similar to POLR2B protein [Ciona intestinalis]
Length = 1173
Score = 639 bits (1647), Expect = e-180, Method: Compositional matrix adjust.
Identities = 329/538 (61%), Positives = 388/538 (72%), Gaps = 37/538 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ IE++ ESQH + S
Sbjct: 20 EMWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPIIELQAESQHTSTEVS 79
Query: 75 -------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK V+K H+
Sbjct: 80 VPTKYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVVK--HEA 137
Query: 128 E------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQ 175
+ ++PIMLRS+YC L + + LTEL ECP D GGYFIINGSEKVLIAQ
Sbjct: 138 QPVETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQ 197
Query: 176 EKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYI 233
EKM+TN VYVFKK+ +KYA+ +E+ S E+ +RP S+++V ML+R K + GQ I
Sbjct: 198 EKMATNTVYVFKKKD-SKYAFTSEIRSSLENSSRPTSSMWVNMLARGGQGVKKSAIGQRI 256
Query: 234 HATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ- 292
A +PYIR EIPIII+FRALGF +D DILEHI YDF D +MME+++PSL+EAF IQ Q
Sbjct: 257 TAIIPYIRQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNV 316
Query: 293 ---YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCA 349
+IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRLL A
Sbjct: 317 ALNFIGSRGAKPGVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSAA 376
Query: 350 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIK 409
LGRR DDRDHYGNKRLDLAGPLL LFR LFR L +VR Y QK +D GKD NL+ AIK
Sbjct: 377 LGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFRNLMKEVRLYAQKFIDRGKDFNLELAIK 436
Query: 410 AKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLA 460
+ IT GLKYSLATGNWG Q A RAGVSQVLN LTYAST ++ KLA
Sbjct: 437 TRIITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTYASTLSHLRRLNSPIGRDGKLA 496
Query: 461 KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
KPRQLHNS WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 497 KPRQLHNSLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 554
>gi|357621065|gb|EHJ73034.1| hypothetical protein KGM_12615 [Danaus plexippus]
Length = 1176
Score = 639 bits (1647), Expect = e-180, Method: Compositional matrix adjust.
Identities = 330/551 (59%), Positives = 395/551 (71%), Gaps = 37/551 (6%)
Query: 4 EEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESAD 59
E+++ EE+E E+ + QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S
Sbjct: 5 EDDQYEEEEVEDISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPP 64
Query: 60 IEIRPESQHNPGQ-------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPL 112
IE++ E+QH+ G+ F +IYLSKP E DG + + ARLRNLTYSAPL
Sbjct: 65 IELQAEAQHSSGEIETPPKYHLKFDQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPL 124
Query: 113 YVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGY 162
YVD+TK ++K+ D E +PIMLRS+YC L + + LTEL ECP D GGY
Sbjct: 125 YVDITKTIVKENEDPIETQHQKTFIGKIPIMLRSTYCLLSNLTDRDLTELNECPLDPGGY 184
Query: 163 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR- 221
FIINGSEKVLIAQEKM+TN VYVF Q KYAY E+ S E +RP ST++V M++R
Sbjct: 185 FIINGSEKVLIAQEKMATNTVYVFSM-QGGKYAYKTEIRSCLEHSSRPTSTLWVNMMARG 243
Query: 222 -TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRP 280
S K + GQ I A +PYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++P
Sbjct: 244 GQSIKKSAIGQRIVAIVPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKP 303
Query: 281 SLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAY 336
SL+EAF IQ Q +IG RGA GVT+E+ IKYA+EILQKEMLPHVG DFCETKKAY
Sbjct: 304 SLDEAFVIQEQNVALSFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAY 363
Query: 337 YFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +
Sbjct: 364 FLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFI 423
Query: 397 DNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY- 454
D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 424 DKGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLR 483
Query: 455 -------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILE 507
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILE
Sbjct: 484 RVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILE 543
Query: 508 FLEEWGTENFE 518
FLEEW EN E
Sbjct: 544 FLEEWSMENLE 554
>gi|340382420|ref|XP_003389717.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Amphimedon
queenslandica]
Length = 1175
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 328/543 (60%), Positives = 395/543 (72%), Gaps = 35/543 (6%)
Query: 10 EDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPE 65
+DE++E + QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ +E++ E
Sbjct: 11 DDEDDEISPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPPLELQAE 70
Query: 66 SQHN-----PGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV 120
+Q++ P F +IYLSKP E DG+ L ARLRNLTYSAPLYVDV K +
Sbjct: 71 AQYDDSDTPPKYSLKFEQIYLSKPTHWEKDGKAVYLMPNEARLRNLTYSAPLYVDVKKTI 130
Query: 121 IKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEK 170
I + D +E +PIMLRS+YC L Q + + L EL ECP D GGYFIINGSEK
Sbjct: 131 IYEDEDSKEDPHPKTFIGKIPIMLRSTYCLLSQLTDRDLNELNECPLDPGGYFIINGSEK 190
Query: 171 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGS 228
VLIAQEKM+TN V+VF K++ +KYA+ AE+ S E+ +RP ST++V LSR T K +
Sbjct: 191 VLIAQEKMATNTVHVFSKKE-SKYAHTAEIRSYIENSSRPVSTLWVSQLSRGGTGVKKSA 249
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
GQ I ATLPYI+ EIPI+I+FRALGF +D DILEHI YDF D +MME+L+PSL+EAF I
Sbjct: 250 IGQKIVATLPYIKQEIPIMIVFRALGFVSDRDILEHIIYDFTDIEMMEMLKPSLDEAFVI 309
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
Q Q +IG RGA GVTREK IKYAK+ILQKE+LPHVG FCET+KAY+ G+++HR
Sbjct: 310 QEQNVALNFIGVRGAKPGVTREKRIKYAKDILQKELLPHVGVSSFCETRKAYFLGYMVHR 369
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LL ALGRR DDRDHYGNKRLDLAGPLL LFR LFR LT +VR Y QK +D G+D NL
Sbjct: 370 LLQAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEVRLYAQKFIDKGRDFNL 429
Query: 405 QFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW------ 457
+ AIK KTIT GL+YSLATGNWG Q A TRAGVSQVLN LT+AST ++
Sbjct: 430 ELAIKTKTITDGLRYSLATGNWGDQKKAHQTRAGVSQVLNRLTFASTLSHLRRLNSPIGR 489
Query: 458 --KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
KLA+PRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW E
Sbjct: 490 DGKLARPRQLHNTHWGMICPAETPEGHAVGLVKNLALMGYISVGSQPAPILEFLEEWSME 549
Query: 516 NFE 518
N E
Sbjct: 550 NLE 552
>gi|324120636|dbj|BAJ78709.1| RNA polymerase II second largest subunit [Zorotypus sp. 154-1]
Length = 1173
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 328/533 (61%), Positives = 384/533 (72%), Gaps = 33/533 (6%)
Query: 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS--- 74
QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S IE++ E+QH G+
Sbjct: 21 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAEAQHTTGEIETPP 80
Query: 75 ----DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE- 129
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +++ G D E
Sbjct: 81 RYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVRDGEDPIEA 140
Query: 130 ---------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMST 180
+PIMLRS+YC L + + LTEL ECP D GGYFIINGSEKVLIAQEKM+T
Sbjct: 141 QHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMAT 200
Query: 181 NHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHATLP 238
N VYVF + KYAY +E+ S E +RP ST++V M++R S K + GQ I A LP
Sbjct: 201 NTVYVFSMKD-GKYAYKSEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILP 259
Query: 239 YIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YI 294
YI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF IQ Q +I
Sbjct: 260 YIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFI 319
Query: 295 GKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
G RGA GVTREK IKYAKEILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALGRR
Sbjct: 320 GSRGARPGVTREKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRE 379
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTIT 414
DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK K IT
Sbjct: 380 LDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKIIT 439
Query: 415 GGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQL 465
GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKPRQL
Sbjct: 440 DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 499
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
HN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 500 HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 552
>gi|324120596|dbj|BAJ78689.1| RNA polymerase II second largest subunit [Lepidocampa weberi]
Length = 1179
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 331/547 (60%), Positives = 391/547 (71%), Gaps = 34/547 (6%)
Query: 4 EEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR 63
E+E +EE E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S I+++
Sbjct: 14 EDEEMEEISSE-LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQ 72
Query: 64 PESQHNPGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV 116
E+QH G+ F +IYLSKP E DG + ARLRNLTYSAPLYVD+
Sbjct: 73 AEAQHTTGEVETPPRYLLKFEQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSAPLYVDI 132
Query: 117 TKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIIN 166
TK VIK+G + E +PIMLRS+YC L + + LTEL ECP D GGYFIIN
Sbjct: 133 TKSVIKEGEEAIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIIN 192
Query: 167 GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSA 224
GSEKVLIAQEKM+TN VYVF + KYAY AE+ S E +RP ST++V ML+R S
Sbjct: 193 GSEKVLIAQEKMATNTVYVFSMKD-GKYAYKAEIRSCLEHSSRPTSTLWVNMLARGGQSI 251
Query: 225 KGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEE 284
K + GQ I A +PYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+E
Sbjct: 252 KKSAIGQRIIAVVPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 311
Query: 285 AFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGH 340
AF +Q Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKAY+ G+
Sbjct: 312 AFVVQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 371
Query: 341 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK 400
++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GK
Sbjct: 372 MVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRIYSQKFIDRGK 431
Query: 401 DVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY----- 454
D NL+ AIK + IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 432 DFNLELAIKTRIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNS 491
Query: 455 ---LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEE 511
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEE
Sbjct: 492 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 551
Query: 512 WGTENFE 518
W EN E
Sbjct: 552 WSMENLE 558
>gi|449676040|ref|XP_002163509.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Hydra
magnipapillata]
Length = 1184
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 328/545 (60%), Positives = 391/545 (71%), Gaps = 36/545 (6%)
Query: 9 EEDEE--EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPES 66
EED+E +E QE W VIS+YFEEKGLVRQQLDSFDEF Q ++Q IV+ES IE++ E+
Sbjct: 16 EEDDEISKELWQEACWTVISSYFEEKGLVRQQLDSFDEFIQMSVQRIVEESPPIELQAET 75
Query: 67 QHNPGQ-------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR 119
Q+ + Q F +IYLSKP E DG + ARLRNLTYSAPLYVD++K
Sbjct: 76 QYTENEIEEPTRYQLKFEQIYLSKPTHWEKDGAPKPMMPNEARLRNLTYSAPLYVDISKT 135
Query: 120 VIKKGHDGE----------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSE 169
+ + G + E ++PIMLRS+YC L + LTEL ECP D GGYFIINGSE
Sbjct: 136 ITRSGQEPETEEHSKIYIGKIPIMLRSTYCVLSGLVDRDLTELNECPLDPGGYFIINGSE 195
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KVLIAQEKM+TN VYVF K+ +KYAY E+ S E +RP ST+F+ ML++ G
Sbjct: 196 KVLIAQEKMATNTVYVFHKKD-SKYAYSCEIRSCLEQSSRPTSTMFISMLAKGGGGGAKK 254
Query: 230 ---GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
GQ I AT+PYIR EIPI+I+FRALGF +D DILEHI YDF D +MME+++PSL+EAF
Sbjct: 255 SAIGQRIIATIPYIRQEIPIMIVFRALGFVSDRDILEHIIYDFTDQEMMEMVKPSLDEAF 314
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
+Q Q +IG RGA GVT+EK IKYA+EILQKEMLPHVGT DFCETKKAY+ G+++
Sbjct: 315 VVQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGTSDFCETKKAYFLGYMV 374
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HR+LL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD
Sbjct: 375 HRILLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFIDKGKDF 434
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW---- 457
++ AIK KTIT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 435 KIELAIKTKTITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPI 494
Query: 458 ----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLA+PRQLHN+ WGM+CPAETPEGQA GLVKNLALM YI++GS PILEFLEEW
Sbjct: 495 GRDGKLARPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSQPSPILEFLEEWA 554
Query: 514 TENFE 518
EN E
Sbjct: 555 MENLE 559
>gi|242009479|ref|XP_002425513.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212509368|gb|EEB12775.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 1175
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 330/555 (59%), Positives = 397/555 (71%), Gaps = 38/555 (6%)
Query: 1 MMMEEERLEEDEE-----EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVD 55
M EE++ E DE+ E QE W VI++YF+EKGLVRQQLDSFDEF Q ++Q IV+
Sbjct: 1 MYEEEDQYENDEDAGEISSELWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIVE 60
Query: 56 ESADIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTY 108
++ I+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTY
Sbjct: 61 DTPIIDLQAEAQHASGEIENPPHYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTY 120
Query: 109 SAPLYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYD 158
SAPLYVD+TK++IK+G D E +PIMLRS+YC L + + LTEL ECP D
Sbjct: 121 SAPLYVDITKKIIKEGEDPIETKHQKSFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLD 180
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GGYFIINGSEKVLIAQEKM+TN VYVF + K+AY AE+ S E +RP ST++V M
Sbjct: 181 PGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKFAYKAEIRSCLEHSSRPTSTLWVNM 239
Query: 219 LSR--TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMME 276
++R S K + GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME
Sbjct: 240 MARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMME 299
Query: 277 LLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET 332
+++PSL+EAF IQ Q +IG RGA GVT+E+ IKYAKEILQKEMLPHVG DFCET
Sbjct: 300 MVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAKEILQKEMLPHVGVSDFCET 359
Query: 333 KKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYV 392
KKAY+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR +
Sbjct: 360 KKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMFA 419
Query: 393 QKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTF 451
QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST
Sbjct: 420 QKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTL 479
Query: 452 TYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAY 503
++ KLAKPRQLHN+ WGM+CPAETPEG A GLVKN+ALM YI++GS
Sbjct: 480 SHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNIALMAYISVGSQPS 539
Query: 504 PILEFLEEWGTENFE 518
PILEFLEEW EN E
Sbjct: 540 PILEFLEEWSMENLE 554
>gi|324120628|dbj|BAJ78705.1| RNA polymerase II second largest subunit [Teleogryllus emma]
Length = 1174
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 328/536 (61%), Positives = 386/536 (72%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S I+++ E+QH G+
Sbjct: 19 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIE 78
Query: 75 D-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
+ F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +IK G +
Sbjct: 79 NPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDGEEP 138
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
E +PIMLRS+YC L + + LTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 139 IETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 198
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHA 235
M+TN VYVF + KYAY AE+ S E +RP ST++V M++R S K + GQ I A
Sbjct: 199 MATNTVYVFSMKD-GKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIA 257
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF IQ Q
Sbjct: 258 VLPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 317
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALG
Sbjct: 318 NFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALG 377
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK K
Sbjct: 378 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTK 437
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 438 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 497
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 498 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 553
>gi|324120662|dbj|BAJ78722.1| RNA polymerase II second largest subunit [Protohermes grandis]
Length = 1175
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 328/541 (60%), Positives = 388/541 (71%), Gaps = 33/541 (6%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
E+ E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S I+++ E+QH
Sbjct: 15 EEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT 74
Query: 70 PGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
G+ + F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK ++K
Sbjct: 75 SGEIENPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVK 134
Query: 123 KGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVL 172
+G D E +PIMLRS+YC L + + LTEL ECP D GGYFIINGSEKVL
Sbjct: 135 EGEDPIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVL 194
Query: 173 IAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSG 230
IAQEKM+TN VYVF + KYAY AE+ S E +RP ST++V M++R + K + G
Sbjct: 195 IAQEKMATNTVYVFAMKD-GKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQAIKKAAIG 253
Query: 231 QYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQN 290
Q I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF IQ
Sbjct: 254 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 313
Query: 291 QQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLL 346
Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRLL
Sbjct: 314 QNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 373
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQF 406
L ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL
Sbjct: 374 LAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFIDRGKDFNLDL 433
Query: 407 AIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSW 457
AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 434 AIKTKMITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRINSPIGRDG 493
Query: 458 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN
Sbjct: 494 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 553
Query: 518 E 518
E
Sbjct: 554 E 554
>gi|324120600|dbj|BAJ78691.1| RNA polymerase II second largest subunit [Petrobiellus takunagae]
Length = 1151
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 327/529 (61%), Positives = 382/529 (72%), Gaps = 33/529 (6%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD------ 75
W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S I+++ E+QH G+ +
Sbjct: 2 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYLL 61
Query: 76 -FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE----- 129
F +IYLSKP E DG + ARLRNLTYSAPLYVD+TK V+K G D E
Sbjct: 62 KFEQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSAPLYVDITKTVVKDGEDPIETQHQK 121
Query: 130 -----VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVY 184
+PIMLRS+YC L + + LTEL ECP D GGYFIINGSEKVLIAQEKM+TN VY
Sbjct: 122 TFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 181
Query: 185 VFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHATLPYIRT 242
VF + KYAY +E+ S E +RP ST++V ML+R S K S GQ I A LPYI+
Sbjct: 182 VFSMKD-GKYAYKSEIRSCLEHSSRPTSTLWVNMLARGGQSVKKSSVGQKIIAILPYIKQ 240
Query: 243 EIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRG 298
EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF IQ Q +IG RG
Sbjct: 241 EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGGRG 300
Query: 299 ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDR 358
A GVTREK IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALGRR DDR
Sbjct: 301 AKPGVTREKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 360
Query: 359 DHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLK 418
DHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD NL+ AIK K IT GL+
Sbjct: 361 DHYGNKRLDLAGPLLAFLFRGMFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLR 420
Query: 419 YSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQ 469
YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKPRQLHN+
Sbjct: 421 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTL 480
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 481 WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 529
>gi|324120654|dbj|BAJ78718.1| RNA polymerase II second largest subunit [Uroleucon
nigrotuberculatum]
Length = 1177
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 330/539 (61%), Positives = 387/539 (71%), Gaps = 39/539 (7%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ-- 72
E QE W VI++YF+EKGLVRQQLDSFDEF Q ++Q IV++S IE++ ESQH G+
Sbjct: 21 ELWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAESQHTHGEID 80
Query: 73 -----QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
Q F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK DG
Sbjct: 81 TPTKYQIKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVIK---DG 137
Query: 128 EE-------------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIA 174
EE +PIMLRS+YC L+ + + LTEL ECP D GGYFIINGSEKVLIA
Sbjct: 138 EEPVVTQHSKSFIGKIPIMLRSTYCLLFGLNDRDLTELNECPLDPGGYFIINGSEKVLIA 197
Query: 175 QEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQY 232
QEKM+TN VYVF + KYA+ AE+ S E +RP ST++V M++R S K + GQ
Sbjct: 198 QEKMATNTVYVFSMKD-GKYAFKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQR 256
Query: 233 IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ 292
I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF IQ Q
Sbjct: 257 IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQN 316
Query: 293 ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLC 348
+IG RGA GVT++K IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRLLL
Sbjct: 317 VALNFIGSRGARPGVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 376
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAI 408
+LGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL AI
Sbjct: 377 SLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLDLAI 436
Query: 409 KAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKL 459
K K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KL
Sbjct: 437 KTKLITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKL 496
Query: 460 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
AKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 497 AKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 555
>gi|324120674|dbj|BAJ78728.1| RNA polymerase II second largest subunit [Papilio polytes]
Length = 1176
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 328/551 (59%), Positives = 395/551 (71%), Gaps = 37/551 (6%)
Query: 4 EEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESAD 59
E+++ EE++ EE + QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S
Sbjct: 5 EDDQFEEEDNEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPP 64
Query: 60 IEIRPESQHNPGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPL 112
IE++ E+QH+ G+ F +IYLSKP E DG + + ARLRNLTYSAPL
Sbjct: 65 IELQAEAQHSSGEIETPPKYLLKFDQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPL 124
Query: 113 YVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGY 162
YVD+TK ++K+ + E +PIMLRS+YC L + + LTEL ECP D GGY
Sbjct: 125 YVDITKTIVKENEEPIETQHQKIFIGKIPIMLRSTYCLLSNLTDRDLTELNECPLDPGGY 184
Query: 163 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR- 221
FIINGSEKVLIAQEKM+TN VYVF + KYAY E+ S E +RP ST++V M++R
Sbjct: 185 FIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKTEIRSCLEHSSRPTSTLWVNMMARG 243
Query: 222 -TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRP 280
S K + GQ I A +PYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++P
Sbjct: 244 GQSIKKSAIGQRIIAIVPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKP 303
Query: 281 SLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAY 336
SL+EAF IQ Q +IG RGA GVT+E+ IKYA+EILQKEMLPHVG DFCETKKAY
Sbjct: 304 SLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAY 363
Query: 337 YFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +
Sbjct: 364 FLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFI 423
Query: 397 DNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY- 454
D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 424 DRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLR 483
Query: 455 -------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILE 507
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILE
Sbjct: 484 RVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILE 543
Query: 508 FLEEWGTENFE 518
FLEEW EN E
Sbjct: 544 FLEEWSMENLE 554
>gi|324120666|dbj|BAJ78724.1| RNA polymerase II second largest subunit [Chrysoperla nipponensis]
Length = 1175
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 329/551 (59%), Positives = 394/551 (71%), Gaps = 37/551 (6%)
Query: 4 EEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESAD 59
EE+ +E EE + QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S
Sbjct: 5 EEDVYDEGAGEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQ 64
Query: 60 IEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPL 112
IE++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPL
Sbjct: 65 IELQAEAQHTSGEMENPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPL 124
Query: 113 YVDVTKRVIKKGHDG----------EEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGY 162
YVD+TK ++K+G + ++PIMLRSS+C L + + + LTEL ECP D GGY
Sbjct: 125 YVDITKTIVKEGEEPIVTQHQKTFIGKIPIMLRSSFCLLSKLTDRDLTELNECPLDPGGY 184
Query: 163 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR- 221
FIINGSEKVLIAQEKM+TN VYVF + KYA+ +E+ S E +RP ST++V M++R
Sbjct: 185 FIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAFKSEIRSCLEHSSRPTSTLWVNMMARG 243
Query: 222 -TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRP 280
S K + GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++P
Sbjct: 244 GQSIKKAAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKP 303
Query: 281 SLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAY 336
SL+EAF IQ Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKAY
Sbjct: 304 SLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAY 363
Query: 337 YFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +
Sbjct: 364 FLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI 423
Query: 397 DNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY- 454
D GKD NL AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 424 DRGKDFNLDLAIKTKMITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLR 483
Query: 455 -------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILE 507
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILE
Sbjct: 484 RVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILE 543
Query: 508 FLEEWGTENFE 518
FLEEW EN E
Sbjct: 544 FLEEWSMENLE 554
>gi|324120658|dbj|BAJ78720.1| RNA polymerase II second largest subunit [Neocolochelyna itoi]
Length = 1175
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 326/552 (59%), Positives = 396/552 (71%), Gaps = 37/552 (6%)
Query: 3 MEEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
+E+++ ++++ EE + QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S
Sbjct: 4 LEDDQYDDEDAEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP 63
Query: 59 DIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
I+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAP
Sbjct: 64 QIDLQAEAQHTSGEIENPVRHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAP 123
Query: 112 LYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
LYVD+TK ++K D E +PIMLRS+YC L + + LTEL ECP D GG
Sbjct: 124 LYVDITKTIVKDAEDPVETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGG 183
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIINGSEKVLIAQEKM+TN VYVF + KYAY AE+ S E +RP ST++V M+++
Sbjct: 184 YFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKAEIRSCLEHSSRPTSTLWVNMMAK 242
Query: 222 TSA--KGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
+ A K + GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++
Sbjct: 243 SGASIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVK 302
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
PSL+EAF IQ Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKA
Sbjct: 303 PSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFCETKKA 362
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ G+++HRLL +LGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK
Sbjct: 363 YFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKF 422
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
+D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHL 482
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PIL
Sbjct: 483 RRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 542
Query: 507 EFLEEWGTENFE 518
EFLEEW EN E
Sbjct: 543 EFLEEWSMENLE 554
>gi|260826766|ref|XP_002608336.1| hypothetical protein BRAFLDRAFT_126222 [Branchiostoma floridae]
gi|229293687|gb|EEN64346.1| hypothetical protein BRAFLDRAFT_126222 [Branchiostoma floridae]
Length = 1104
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 335/568 (58%), Positives = 394/568 (69%), Gaps = 59/568 (10%)
Query: 9 EEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRP 64
EEDE +E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV++S I+++
Sbjct: 12 EEDETDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQA 71
Query: 65 ESQH-------NPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT 117
E+QH P +F +IYLSKP E DG + + ARLRNLTYSAPLYVD+T
Sbjct: 72 EAQHLTMEAEVPPRYLLNFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDIT 131
Query: 118 KRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIING 167
K ++K G + E +PIMLRS+YC L + + LTEL ECP D GGYFIING
Sbjct: 132 KTIVKDGEERIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIING 191
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAK 225
SEKVLIAQEKM+TN VYVF K+ +KYA+ E+ S E +RP ST++V ML+R T +
Sbjct: 192 SEKVLIAQEKMATNSVYVFAKKD-SKYAFTGEIRSCLEHSSRPTSTLWVHMLARGGTGQR 250
Query: 226 GGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA 285
+ GQ I A LPYIR EIPIII+FRALGF +D DILEHI YDF D +MME+L+PSL+EA
Sbjct: 251 KSAIGQRIVAVLPYIRQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMLKPSLDEA 310
Query: 286 FFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHI 341
F IQ Q +IG RGA GVT++K IKYA+EILQKEMLPHVG D+CETKKAY+ G+I
Sbjct: 311 FVIQEQNVALNFIGARGAKPGVTKDKRIKYAREILQKEMLPHVGISDYCETKKAYFLGYI 370
Query: 342 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD 401
+HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ LT +VR Y QK +D GKD
Sbjct: 371 VHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAYLFRGLFKNLTKEVRIYAQKFIDRGKD 430
Query: 402 VNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--- 457
NL+ AIK + IT GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 431 FNLELAIKTRIITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSP 490
Query: 458 -----KLAKPRQLHNSQWGMMCPAETPE----------------------GQACGLVKNL 490
KLAKPRQLHNS WGM+CPAETPE GQA GLVKNL
Sbjct: 491 IGRDGKLAKPRQLHNSLWGMICPAETPEGQAVGLVKNLALMAYISMVHDNGQAVGLVKNL 550
Query: 491 ALMVYITIGSAAYPILEFLEEWGTENFE 518
ALM YI++GS PILEFLEEW EN E
Sbjct: 551 ALMAYISVGSQPSPILEFLEEWSMENLE 578
>gi|291190610|ref|NP_001167150.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
gi|223648370|gb|ACN10943.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
Length = 1174
Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust.
Identities = 325/550 (59%), Positives = 395/550 (71%), Gaps = 36/550 (6%)
Query: 4 EEERLEEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
E+ + +EDE+E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I
Sbjct: 6 EDIQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65
Query: 61 EIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+++ E+QH G+ D F +IYLSKP E DG + + ARLRNLTYSAPLY
Sbjct: 66 DLQAEAQHTSGEVEDPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLY 125
Query: 114 VDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
VD+TK +IK+G D + +PIMLRS+YC L + + L EL ECP D GGYF
Sbjct: 126 VDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYF 185
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-- 221
IINGSEKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP S+I+V M++R
Sbjct: 186 IINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSSIWVSMMARGG 244
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
K + GQ I +TLPYIR E+PIII+FRALGF +D DILEHI YDF D +MME+++PS
Sbjct: 245 QGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPS 304
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+E+ IKYAKE+LQKE+LPHVG DFCETKKAY+
Sbjct: 305 LDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETKKAYF 364
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L ++R Y QK +D
Sbjct: 365 LGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFID 424
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWGQ-GNAAGTRAGVSQVLNCLTYASTFTYY-- 454
GKD NL+ AIK + I+ GLKYSLATGNWG A RAGVSQVLN LT+AST ++
Sbjct: 425 RGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 455 ------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEF
Sbjct: 485 VNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 545 LEEWSMENLE 554
>gi|324120676|dbj|BAJ78729.1| RNA polymerase II second largest subunit [Stenopsyche marmorata]
Length = 1174
Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust.
Identities = 327/536 (61%), Positives = 385/536 (71%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S I+++ E+QH G+
Sbjct: 18 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHASGEIE 77
Query: 75 -------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
F +IYLSKP E DG A + ARLRNLTYSAPLYVD+TK ++K+G D
Sbjct: 78 TPPHYLLKFEQIYLSKPTHWEKDGAAAAMMPNEARLRNLTYSAPLYVDITKTIVKEGEDP 137
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
E +PIMLRS+YC L + LTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 138 IETQHQKTFIGKIPIMLRSTYCLLNGLIDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 197
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHA 235
M+TN VYVF + K+A+ AE+ S E +RP ST++V M+SR S K + GQ I A
Sbjct: 198 MATNTVYVFSMKD-GKFAFKAEIRSCLEHSSRPTSTLWVNMMSRGGQSIKKNAIGQRIIA 256
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
+PYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF IQ Q
Sbjct: 257 IVPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 316
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALG
Sbjct: 317 NFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALG 376
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK K
Sbjct: 377 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTK 436
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 437 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 496
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 497 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 552
>gi|324120664|dbj|BAJ78723.1| RNA polymerase II second largest subunit [Inocellia japonica]
Length = 1175
Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust.
Identities = 327/533 (61%), Positives = 383/533 (71%), Gaps = 33/533 (6%)
Query: 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN-------P 70
QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S I+++ E+QH P
Sbjct: 23 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSAEIETPP 82
Query: 71 GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE- 129
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +IK G D E
Sbjct: 83 HYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDGDDPIET 142
Query: 130 ---------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMST 180
+PIMLRS+YC L + + LTEL ECP D GGYFIINGSEKVLIAQEKM+T
Sbjct: 143 QHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMAT 202
Query: 181 NHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHATLP 238
N VYVF + +KYAY AE+ S E +RP S+++V M++R + K + GQ I A LP
Sbjct: 203 NTVYVFSMKD-SKYAYKAEIRSCLEHSSRPTSSLWVNMMARGGQAIKKAAIGQRIIAILP 261
Query: 239 YIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YI 294
YIR EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF IQ Q +I
Sbjct: 262 YIRQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFI 321
Query: 295 GKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
G RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALGRR
Sbjct: 322 GARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRE 381
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTIT 414
DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL AIK K IT
Sbjct: 382 LDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTKMIT 441
Query: 415 GGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQL 465
GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKPRQL
Sbjct: 442 DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
HN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 502 HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 554
>gi|156372267|ref|XP_001628960.1| predicted protein [Nematostella vectensis]
gi|156215949|gb|EDO36897.1| predicted protein [Nematostella vectensis]
Length = 1182
Score = 635 bits (1639), Expect = e-179, Method: Compositional matrix adjust.
Identities = 327/545 (60%), Positives = 390/545 (71%), Gaps = 37/545 (6%)
Query: 10 EDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPE 65
EDE E+ T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV++S +I+++ E
Sbjct: 15 EDEGEDITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPEIDLQAE 74
Query: 66 SQHNPGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK 118
SQH F +IYLSKP E DG + + ARLRNLTYSAP YVD+TK
Sbjct: 75 SQHMTSDTEIPARFVLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPFYVDITK 134
Query: 119 RVIKKGHDGE----------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGS 168
IK + + ++PIMLRS+YC L + LTEL ECP D GGYFIINGS
Sbjct: 135 TRIKDNEEPQVTTHSKMFIGKIPIMLRSTYCLLNGLLDRDLTELNECPLDPGGYFIINGS 194
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGS 228
EKVLIAQEKM+TN VYVF K+ +KY+Y AE+ S E +RP ST++V ML++ S+ G
Sbjct: 195 EKVLIAQEKMATNTVYVFSKKD-SKYSYTAEIRSCLEHSSRPTSTMWVSMLAKGSSGGRR 253
Query: 229 S--GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
S GQ I +LPYI+ EIPI+I+FRALGF AD DILEHI YDF+D +MME+++PSL+EAF
Sbjct: 254 SAIGQRIVGSLPYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDQEMMEMVKPSLDEAF 313
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ Q +IG RGA GVT+E+ IKYAKEILQKEMLPHVG DFCETKKAY+ G+++
Sbjct: 314 VIQEQNVALNFIGSRGARPGVTKERRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMV 373
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LFR L +VR Y QK +D GKD
Sbjct: 374 HRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFRNLMKEVRMYAQKFIDRGKDF 433
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW---- 457
N++ A+K K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 434 NIELALKPKVITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPI 493
Query: 458 ----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEF+EEW
Sbjct: 494 GREGKLAKPRQLHNTHWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFMEEWT 553
Query: 514 TENFE 518
EN E
Sbjct: 554 MENLE 558
>gi|49619043|gb|AAT68106.1| RNA polymerase II subunit B [Danio rerio]
Length = 562
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 323/550 (58%), Positives = 395/550 (71%), Gaps = 36/550 (6%)
Query: 4 EEERLEEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
E+ + +ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I
Sbjct: 6 EDIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65
Query: 61 EIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLY
Sbjct: 66 DLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLY 125
Query: 114 VDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
VD+TK +IK G + ++ +PIMLRS+YC L + + L EL ECP D GGYF
Sbjct: 126 VDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYF 185
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-- 221
IINGSEKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V M++R
Sbjct: 186 IINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMMARGG 244
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
K + GQ I +TLPYIR E+PIII+FRALGF +D DILEHI YDF D +MME+++PS
Sbjct: 245 QGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPS 304
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+E+ IKYAKE+LQKE+LPHVG DFCETKKAY+
Sbjct: 305 LDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETKKAYF 364
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L ++R Y QK +D
Sbjct: 365 LGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFID 424
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWGQ-GNAAGTRAGVSQVLNCLTYASTFTYY-- 454
GKD NL+ AIK + I+ GLKYSLATGNWG A RAGVSQVLN LT+AST ++
Sbjct: 425 RGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 455 ------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEF
Sbjct: 485 VNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 545 LEEWSMENLE 554
>gi|91090964|ref|XP_974653.1| PREDICTED: similar to AGAP003648-PA [Tribolium castaneum]
gi|270013197|gb|EFA09645.1| hypothetical protein TcasGA2_TC011771 [Tribolium castaneum]
Length = 1175
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 324/533 (60%), Positives = 385/533 (72%), Gaps = 33/533 (6%)
Query: 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD-- 75
QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S I+++ E+QH G+ +
Sbjct: 23 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGELENPS 82
Query: 76 -----FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE- 129
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK ++K G D E
Sbjct: 83 RYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEDPIET 142
Query: 130 ---------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMST 180
+PIMLRS+YC L + + LTEL ECP D GGYFIINGSEKVLIAQEKM+T
Sbjct: 143 QHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMAT 202
Query: 181 NHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHATLP 238
N VYVF + KYA+ +E+ S E +RP ST++V M++R + K + GQ I A LP
Sbjct: 203 NTVYVFSMKD-GKYAFKSEIRSCLEHSSRPTSTLWVNMMARGGQAIKKAAIGQRIIAILP 261
Query: 239 YIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YI 294
YI+ EIPI+I+FRALGF AD DILEHI YDF+D +MME+++PSL+EAF IQ Q +I
Sbjct: 262 YIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNIALNFI 321
Query: 295 GKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
G RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALGRR
Sbjct: 322 GTRGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRE 381
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTIT 414
DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL AIK K IT
Sbjct: 382 LDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTKLIT 441
Query: 415 GGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQL 465
GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKPRQL
Sbjct: 442 DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
HN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 502 HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 554
>gi|324120634|dbj|BAJ78708.1| RNA polymerase II second largest subunit [Forficula hiromasai]
Length = 1174
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 328/536 (61%), Positives = 384/536 (71%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S IE++ E+QH G+
Sbjct: 19 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAEAQHTAGEIE 78
Query: 75 D-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
+ F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +IK +
Sbjct: 79 NPPKYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDKEEP 138
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
E +PIMLRS+YC L + + LTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 139 IETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 198
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHA 235
M+TN VYVF + KYAY +E+ S E +RP ST++V M++R S K + GQ I A
Sbjct: 199 MATNTVYVFSMKD-GKYAYKSEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIA 257
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF IQ Q
Sbjct: 258 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 317
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVTREK IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALG
Sbjct: 318 NFIGARGARPGVTREKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALG 377
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL AIK K
Sbjct: 378 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTK 437
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 438 IITDGLRYSLATGNWGDQKKAHMARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 497
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 498 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 553
>gi|170042980|ref|XP_001849183.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
quinquefasciatus]
gi|167866385|gb|EDS29768.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
quinquefasciatus]
Length = 1176
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 330/545 (60%), Positives = 387/545 (71%), Gaps = 36/545 (6%)
Query: 9 EEDEEE---ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPE 65
EED EE E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S IE+ E
Sbjct: 12 EEDPEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTAE 71
Query: 66 SQHNPGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK 118
+QH G F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK
Sbjct: 72 AQHTTGDIETPTRYVLKFDQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK 131
Query: 119 RVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGS 168
I +G D E +PIMLRS+YC L Q + + LTEL ECP D GGYFIINGS
Sbjct: 132 TKIVEGQDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGS 191
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKG 226
EKVLIAQEKM+TN VYVF + KYAY +E+ S E +RP ST++ M++R S K
Sbjct: 192 EKVLIAQEKMATNTVYVFSMKD-GKYAYKSEIRSCLEHSSRPTSTLWCNMMARGGQSIKK 250
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
+ GQ + A LPY++ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF
Sbjct: 251 SAIGQRVIAILPYVKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 310
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
+Q Q +IG RGA GVT++K IKYAKEILQKEMLPHVG DFCETKKAY+ G+++
Sbjct: 311 VVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMV 370
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD
Sbjct: 371 HRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFIDRGKDF 430
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------- 454
NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 431 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPI 490
Query: 455 -LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW
Sbjct: 491 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 550
Query: 514 TENFE 518
EN E
Sbjct: 551 MENLE 555
>gi|324120678|dbj|BAJ78730.1| RNA polymerase II second largest subunit [Panorpa takenouchii]
Length = 1172
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 324/536 (60%), Positives = 385/536 (71%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S I+++ E+QH G+
Sbjct: 17 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIDLQAEAQHTSGEIE 76
Query: 75 -------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +++ G D
Sbjct: 77 TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTIVQDGKDS 136
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
E +PIMLRS+YC L + + LTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 137 VETQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 196
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHA 235
M+TN VYVF + K+AY AE+ S E +RP ST++V M++R S K + GQ I A
Sbjct: 197 MATNTVYVFSMKD-GKFAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIA 255
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF +Q Q
Sbjct: 256 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDQEMMEMVKPSLDEAFVVQEQNVAL 315
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVT++K IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALG
Sbjct: 316 NFIGARGARPGVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALG 375
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK K
Sbjct: 376 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDKGKDFNLELAIKTK 435
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 436 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRINSPIGRDGKLAKP 495
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 496 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 551
>gi|340726257|ref|XP_003401477.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
terrestris]
gi|350425904|ref|XP_003494269.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
impatiens]
Length = 1175
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 324/552 (58%), Positives = 396/552 (71%), Gaps = 37/552 (6%)
Query: 3 MEEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
+E+++ ++++ EE + QE W VI+AYF+EKGLVRQQLDSFDEF + ++Q IV++S
Sbjct: 4 LEDDQYDDEDAEEISSKLWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSP 63
Query: 59 DIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
I+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAP
Sbjct: 64 QIDLQAEAQHTSGEIENPVRHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAP 123
Query: 112 LYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
LYVD+TK ++K G D E +PIMLRS YC L S + LTEL ECP D GG
Sbjct: 124 LYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGG 183
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIINGSEKVLIAQEKM+TN VYVF + KYAY +E+ S E +RP ST+++ M+++
Sbjct: 184 YFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKSEIRSCLEHSSRPTSTLWINMMAK 242
Query: 222 TSA--KGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
+ A K + GQ I A +PYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++
Sbjct: 243 SGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVK 302
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
PSL+EAF IQ Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKA
Sbjct: 303 PSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFCETKKA 362
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ G+++HRLL +LGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK
Sbjct: 363 YFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKF 422
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
+D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHL 482
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PIL
Sbjct: 483 RRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 542
Query: 507 EFLEEWGTENFE 518
EFLEEW EN E
Sbjct: 543 EFLEEWSMENLE 554
>gi|332022245|gb|EGI62560.1| DNA-directed RNA polymerase II subunit RPB2 [Acromyrmex echinatior]
Length = 1178
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 325/552 (58%), Positives = 395/552 (71%), Gaps = 37/552 (6%)
Query: 3 MEEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
+E+++ +E+++EE + QE W +I+AYF+EKGLVRQQLDSFDEF + ++Q IV++S
Sbjct: 7 LEDDQYDEEDKEEISSKLWQEACWILINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSP 66
Query: 59 DIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
IE++ E+QH G+ F +IYLSKP E DG + + ARLRNLTYSAP
Sbjct: 67 QIELQAEAQHTTGEIEKPVKHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAP 126
Query: 112 LYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
LYVD+TK + K G D E +PIMLRS YC L S + LTEL ECP D GG
Sbjct: 127 LYVDITKTIEKDGEDPVETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGG 186
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIINGSEKVLIAQEKM+TN VYVF + KYAY AE+ S E +RP ST+++ M+++
Sbjct: 187 YFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKAEIRSCLEHSSRPTSTLWINMMAK 245
Query: 222 TSA--KGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
+ A K + GQ I A +PYI+ EIPI+++FRALGF AD DILEHI YDF D +MME+++
Sbjct: 246 SGASIKKSAIGQRIIAIIPYIKQEIPIMVVFRALGFVADRDILEHIIYDFDDPEMMEMVK 305
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
PSL+EAF IQ Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKA
Sbjct: 306 PSLDEAFVIQEQNVALNFIGTRGAKPGVTKEKRIKYAREILQKEMLPHVGISDFCETKKA 365
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ G+++HRLL +LGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK
Sbjct: 366 YFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKF 425
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
+D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 426 IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHL 485
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PIL
Sbjct: 486 RRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 545
Query: 507 EFLEEWGTENFE 518
EFLEEW EN E
Sbjct: 546 EFLEEWSMENLE 557
>gi|383851705|ref|XP_003701372.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Megachile rotundata]
Length = 1175
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 324/552 (58%), Positives = 396/552 (71%), Gaps = 37/552 (6%)
Query: 3 MEEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
+E+++ ++++ EE + QE W VI+AYF+EKGLVRQQLDSFDEF + ++Q IV++S
Sbjct: 4 LEDDQYDDEDAEEISSKLWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSP 63
Query: 59 DIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
I+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAP
Sbjct: 64 QIDLQAEAQHTSGEIENPVRHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAP 123
Query: 112 LYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
LYVD+TK ++K G D E +PIMLRS YC L S + LTEL ECP D GG
Sbjct: 124 LYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGG 183
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIINGSEKVLIAQEKM+TN VYVF + KYAY +E+ S E +RP ST+++ M+++
Sbjct: 184 YFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKSEIRSCLEHSSRPTSTLWINMMAK 242
Query: 222 TSA--KGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
+ A K + GQ I A +PYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++
Sbjct: 243 SGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVK 302
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
PSL+EAF IQ Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKA
Sbjct: 303 PSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFCETKKA 362
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ G+++HRLL +LGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK
Sbjct: 363 YFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKF 422
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
+D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHL 482
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PIL
Sbjct: 483 RRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 542
Query: 507 EFLEEWGTENFE 518
EFLEEW EN E
Sbjct: 543 EFLEEWSMENLE 554
>gi|307182559|gb|EFN69752.1| DNA-directed RNA polymerase II subunit RPB2 [Camponotus floridanus]
Length = 1178
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 323/552 (58%), Positives = 396/552 (71%), Gaps = 37/552 (6%)
Query: 3 MEEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
+E+++ ++++ EE + QE W +I+AYF+EKGLVRQQLDSFDEF + ++Q IV++S
Sbjct: 7 LEDDQYDDEDAEEISSKLWQEACWILINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSP 66
Query: 59 DIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
I+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAP
Sbjct: 67 QIDLQAEAQHTTGEIENPVRHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAP 126
Query: 112 LYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
LYVD+TK ++K G D E +PIMLRS YC L S + LTEL ECP D GG
Sbjct: 127 LYVDITKTIVKDGEDPVETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGG 186
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIINGSEKVLIAQEKM+TN VYVF + KYAY AE+ S E +RP ST+++ M+++
Sbjct: 187 YFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKAEIRSCLEHSSRPTSTLWINMMAK 245
Query: 222 TSA--KGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
+ A K + GQ I A +PYI+ EIPI+++FRALGF AD DILEHI YDF D +MME+++
Sbjct: 246 SGASIKKSAIGQRIIAIIPYIKQEIPIMVVFRALGFVADRDILEHIIYDFDDPEMMEMVK 305
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
PSL+EAF IQ Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKA
Sbjct: 306 PSLDEAFVIQEQNVALNFIGTRGAKPGVTKEKRIKYAREILQKEMLPHVGISDFCETKKA 365
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ G+++HRLL +LGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK
Sbjct: 366 YFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKF 425
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
+D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 426 IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHL 485
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PIL
Sbjct: 486 RRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 545
Query: 507 EFLEEWGTENFE 518
EFLEEW EN E
Sbjct: 546 EFLEEWSMENLE 557
>gi|403182531|gb|EJY57456.1| AAEL017213-PA [Aedes aegypti]
Length = 1176
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 329/545 (60%), Positives = 387/545 (71%), Gaps = 36/545 (6%)
Query: 9 EEDEEE---ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPE 65
EED EE E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S IE+ E
Sbjct: 12 EEDPEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTAE 71
Query: 66 SQHNPGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK 118
+QH G F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK
Sbjct: 72 AQHTSGDIETPTRYVLKFDQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK 131
Query: 119 RVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGS 168
I +G D E +PIMLRS+YC L Q + + LTEL ECP D GGYFIINGS
Sbjct: 132 TKIVEGQDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGS 191
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKG 226
EKVLIAQEKM+TN VYVF + KYAY +E+ S E +RP ST++ M++R S K
Sbjct: 192 EKVLIAQEKMATNTVYVFSMKD-GKYAYKSEIRSCLEHSSRPTSTLWCNMMARGGQSIKK 250
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
+ GQ + A LPY++ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF
Sbjct: 251 SAIGQRVIAILPYVKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 310
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
+Q Q +IG RGA GVT++K IKYAKEILQKEMLPHVG DFCETKKAY+ G+++
Sbjct: 311 VVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMV 370
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLLL ALGRR DDRDHYGNKRLDLAGPL+ LFR LF+ L +VR Y QK +D GKD
Sbjct: 371 HRLLLAALGRRELDDRDHYGNKRLDLAGPLMALLFRGLFKSLVKEVRMYAQKFIDRGKDF 430
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------- 454
NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 431 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPI 490
Query: 455 -LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW
Sbjct: 491 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 550
Query: 514 TENFE 518
EN E
Sbjct: 551 MENLE 555
>gi|324120594|dbj|BAJ78688.1| RNA polymerase II second largest subunit [Metriocampa sp. 44]
Length = 1176
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 323/533 (60%), Positives = 385/533 (72%), Gaps = 33/533 (6%)
Query: 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD-- 75
QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S I+++ E+QH G+ +
Sbjct: 24 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTTGEVENPP 83
Query: 76 -----FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE- 129
F +IYLSKP E DG + ARLRNLTYSAPLYVD+TK ++K+G + E
Sbjct: 84 RYLLKFEQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSAPLYVDITKSIVKEGEEAVET 143
Query: 130 ---------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMST 180
+PIMLRS+YC L + + LTEL ECP D GGYFIINGSEKVLIAQEKM+T
Sbjct: 144 QHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMAT 203
Query: 181 NHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHATLP 238
N VYVF + KYAY +E+ S E +RP ST++V ML+R S K + GQ I A +P
Sbjct: 204 NTVYVFSMKD-GKYAYKSEIRSCLEHSSRPTSTLWVNMLARGGQSIKKSAIGQRIIAIVP 262
Query: 239 YIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YI 294
YI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF +Q Q +I
Sbjct: 263 YIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNFI 322
Query: 295 GKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
G RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALGRR
Sbjct: 323 GARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRE 382
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTIT 414
DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK + IT
Sbjct: 383 LDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFIDRGKDFNLELAIKTRIIT 442
Query: 415 GGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQL 465
GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKPRQL
Sbjct: 443 DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 502
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
HN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 503 HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 555
>gi|302488402|ref|NP_001019632.2| DNA-directed RNA polymerase II subunit RPB2 [Danio rerio]
Length = 1174
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 323/550 (58%), Positives = 395/550 (71%), Gaps = 36/550 (6%)
Query: 4 EEERLEEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
E+ + +ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I
Sbjct: 6 EDIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65
Query: 61 EIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLY
Sbjct: 66 DLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLY 125
Query: 114 VDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
VD+TK +IK G + ++ +PIMLRS+YC L + + L EL ECP D GGYF
Sbjct: 126 VDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYF 185
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-- 221
IINGSEKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V M++R
Sbjct: 186 IINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMMARGG 244
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
K + GQ I +TLPYIR E+PIII+FRALGF +D DILEHI YDF D +MME+++PS
Sbjct: 245 QGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPS 304
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+E+ IKYAKE+LQKE+LPHVG DFCETKKAY+
Sbjct: 305 LDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETKKAYF 364
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L ++R Y QK +D
Sbjct: 365 LGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFID 424
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWGQ-GNAAGTRAGVSQVLNCLTYASTFTYY-- 454
GKD NL+ AIK + I+ GLKYSLATGNWG A RAGVSQVLN LT+AST ++
Sbjct: 425 RGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 455 ------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEF
Sbjct: 485 VNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 545 LEEWSMENLE 554
>gi|321470077|gb|EFX81055.1| hypothetical protein DAPPUDRAFT_102782 [Daphnia pulex]
Length = 1174
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 326/551 (59%), Positives = 394/551 (71%), Gaps = 37/551 (6%)
Query: 4 EEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESAD 59
+E+ +E+++ EE + QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S
Sbjct: 5 DEDPIEDEDGEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPA 64
Query: 60 IEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPL 112
I+++ E+QH+ G+ + F +IYLSKP E DG + ARLRNLTYSAPL
Sbjct: 65 IDLQAEAQHSSGEVENPPRYVLKFEQIYLSKPTHWEKDGAPTAMMPNEARLRNLTYSAPL 124
Query: 113 YVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGY 162
YVD+TK V K+G + E +PIMLRS+YC L + + L EL ECP D GGY
Sbjct: 125 YVDITKTVHKEGEEQVETQHQKTFIGKIPIMLRSTYCLLNGMNDRDLCELNECPLDPGGY 184
Query: 163 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR- 221
FIINGSEKVLIAQEKM+TN VYVF + K+AY E+ S E +RP ST++V ML+R
Sbjct: 185 FIINGSEKVLIAQEKMATNTVYVFSMKD-GKFAYKTEIRSCLEHSSRPTSTLYVNMLARG 243
Query: 222 -TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRP 280
K + GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF+D +MME+++P
Sbjct: 244 GQGIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEMMEMVKP 303
Query: 281 SLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAY 336
SL+EAF IQ Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKAY
Sbjct: 304 SLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAY 363
Query: 337 YFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPL+ LFR LF+ L +VR Y QK +
Sbjct: 364 FLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMAFLFRALFKTLMKEVRMYAQKFI 423
Query: 397 DNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY- 454
D GKD NL+ AIK + IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 424 DRGKDFNLELAIKTRIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLR 483
Query: 455 -------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILE 507
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILE
Sbjct: 484 RVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGAAVGLVKNLALMAYISVGSQPSPILE 543
Query: 508 FLEEWGTENFE 518
FLEEW EN E
Sbjct: 544 FLEEWSMENLE 554
>gi|324120632|dbj|BAJ78707.1| RNA polymerase II second largest subunit [Euborellia plebeja]
Length = 1174
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 327/536 (61%), Positives = 384/536 (71%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S I+++ E+QH G+
Sbjct: 19 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTAGEIE 78
Query: 75 D-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
+ F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +IK +
Sbjct: 79 NPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDKEEP 138
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
E +PIMLRS+YC L + + LTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 139 IETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 198
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHA 235
M+TN VYVF + K+AY AE+ S E +RP ST++V M++R S K + GQ I A
Sbjct: 199 MATNTVYVFSMKD-GKFAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIA 257
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF IQ Q
Sbjct: 258 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 317
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVTREK IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALG
Sbjct: 318 NFIGARGARPGVTREKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALG 377
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL AIK K
Sbjct: 378 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTK 437
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 438 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 497
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 498 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 553
>gi|324120602|dbj|BAJ78692.1| RNA polymerase II second largest subunit [Nipponatelura sp. 66-1]
Length = 1175
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 325/536 (60%), Positives = 386/536 (72%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E QE W VI+AYF++KGLVRQQLDSFDEF Q ++Q IV++S I+++ E+QH G+
Sbjct: 20 ELWQEACWIVINAYFDDKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIE 79
Query: 75 D-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
+ F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +IK G +
Sbjct: 80 NPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDGDEP 139
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
E +PIMLRS+YC L + + LTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 140 VETQNQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 199
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHA 235
M+TN VYVF + KYA+ +E+ S E +RP ST++V M++R S K + GQ I A
Sbjct: 200 MATNTVYVFSMKD-GKYAFKSEIRSCQEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIA 258
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF IQ Q
Sbjct: 259 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 318
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALG
Sbjct: 319 NFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALG 378
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK K
Sbjct: 379 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTK 438
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 439 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 498
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 499 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 554
>gi|347970296|ref|XP_313416.4| AGAP003648-PA [Anopheles gambiae str. PEST]
gi|333468866|gb|EAA08858.4| AGAP003648-PA [Anopheles gambiae str. PEST]
Length = 1175
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 325/536 (60%), Positives = 385/536 (71%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S IE+ E+QH+ G+
Sbjct: 20 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTAEAQHSSGEIE 79
Query: 75 D-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
+ F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK + +G D
Sbjct: 80 NPTRYLLKFDQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKLVEGQDP 139
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
E +PIMLRS+YC L Q + + LTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 140 VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 199
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHA 235
M+TN VYVF + KYAY E+ S E +RP ST++V M++R S K + GQ + A
Sbjct: 200 MATNTVYVFSMKD-GKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRVIA 258
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPY++ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF +Q Q
Sbjct: 259 ILPYVKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVAL 318
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVT++K IKYAKEILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALG
Sbjct: 319 NFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALG 378
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK K
Sbjct: 379 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTK 438
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 439 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 498
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 499 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 554
>gi|324120624|dbj|BAJ78703.1| RNA polymerase II second largest subunit [Nomadacris japonica]
Length = 1173
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 327/536 (61%), Positives = 383/536 (71%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S IE++ E+QH G+
Sbjct: 18 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAEAQHTSGEIE 77
Query: 75 D-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
+ F +IYLSKP E DG + + ARLRNLTYSAPLYVD+ KRV K +
Sbjct: 78 NPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDILKRVEKHKEEP 137
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
E +PIMLRS+YC L + + LTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 138 VETLHQKTFIGKIPIMLRSTYCLLSTLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 197
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHA 235
M+TN VYVF + KYAY AE+ S E +RP ST++V M++R S K + GQ I A
Sbjct: 198 MATNTVYVFSMKD-GKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIVA 256
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPYI+ EIPIII FRALGF AD DILEHI YDF D +MME+++PSL+EAF +Q Q
Sbjct: 257 ILPYIKQEIPIIIAFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVAL 316
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVT+E+ IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALG
Sbjct: 317 NFIGTRGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALG 376
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK K
Sbjct: 377 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTK 436
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 437 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 496
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 497 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 552
>gi|324120652|dbj|BAJ78717.1| RNA polymerase II second largest subunit [Bemisia tabaci]
Length = 1176
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 328/545 (60%), Positives = 389/545 (71%), Gaps = 36/545 (6%)
Query: 9 EEDEEE---ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPE 65
+ED E E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S I+++ E
Sbjct: 11 DEDSGEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAE 70
Query: 66 SQHNPGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK 118
+QH G+ F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK
Sbjct: 71 AQHTSGEIETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK 130
Query: 119 RVIKKGHDGE----------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGS 168
VIK G + ++PIMLRS++C L + + LTEL ECP D GGYFIINGS
Sbjct: 131 TVIKDGQEPVVTEHEKSFIGKIPIMLRSTFCLLSGLTDRDLTELNECPLDPGGYFIINGS 190
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKG 226
EKVLIAQEKM+TN VYVF + KYAY AE+ S E +RP ST++V M++R S K
Sbjct: 191 EKVLIAQEKMATNTVYVFSMKD-GKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKK 249
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
+ GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF
Sbjct: 250 SAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 309
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ Q +IG RGA GVT++K IKYA+EILQKEMLPHVG DFCETKKAY+ G+++
Sbjct: 310 VIQEQNVALNFIGARGARPGVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 369
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD
Sbjct: 370 HRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDF 429
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------- 454
N++ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 430 NMELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPI 489
Query: 455 -LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW
Sbjct: 490 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 549
Query: 514 TENFE 518
EN E
Sbjct: 550 MENLE 554
>gi|391332506|ref|XP_003740675.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Metaseiulus occidentalis]
Length = 1178
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 326/533 (61%), Positives = 382/533 (71%), Gaps = 33/533 (6%)
Query: 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPG------ 71
QE W VISAYF+EKGLVRQQLDSFDEF Q ++Q+IV+++ IE++ E+ H+ G
Sbjct: 21 QEACWIVISAYFDEKGLVRQQLDSFDEFIQMSVQKIVEDTPPIELQAEATHSSGIIEQPT 80
Query: 72 -QQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE- 129
Q F +IYLSKP E DG + ARLRNLTYSAPLYVD+ K VI+ G D E
Sbjct: 81 KYQVKFEQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSAPLYVDIIKTVIRDGEDPVET 140
Query: 130 ---------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMST 180
+PIMLRSSYC L S + L+EL ECP D GGYFIINGSEKVLIAQEKM+T
Sbjct: 141 QHQKTFIGKIPIMLRSSYCLLNGLSDRDLSELNECPLDPGGYFIINGSEKVLIAQEKMAT 200
Query: 181 NHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHATLP 238
N VYVF+ + KYA+ AE S E +RP ST++V M++R + K S GQ I A LP
Sbjct: 201 NTVYVFQMKD-GKYAFKAECRSCIEHSSRPTSTLWVNMMARGGSGVKKASIGQRIIAILP 259
Query: 239 YIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YI 294
YI+ EIPI+I+FRALGF AD DILEHI YDF+D +MME+++PSL+EAF IQ Q +I
Sbjct: 260 YIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFI 319
Query: 295 GKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
G RGA GVT+ IKYA+EILQKEMLPHVG DFCETKKAYY G+++HRLLL ALGRR
Sbjct: 320 GSRGARPGVTKANRIKYAREILQKEMLPHVGVSDFCETKKAYYLGYMVHRLLLAALGRRE 379
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTIT 414
DDRDHYGNKRLDLAGPL+ LFR LF+ LT +VR + QK +D GKD NL+ AIK + IT
Sbjct: 380 LDDRDHYGNKRLDLAGPLMAFLFRGLFKNLTKEVRMFAQKFIDKGKDFNLELAIKTRIIT 439
Query: 415 GGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQL 465
GLKYSLATGNWG Q A R GVSQVLN LTYAST ++ KLAKPRQL
Sbjct: 440 DGLKYSLATGNWGDQKKAHQARPGVSQVLNRLTYASTLSHLRRVNSPIGRDGKLAKPRQL 499
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
HN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 500 HNTLWGMICPAETPEGHAVGLVKNLALMSYISVGSQPSPILEFLEEWSMENLE 552
>gi|324120616|dbj|BAJ78699.1| RNA polymerase II second largest subunit [Phraortes illepidus]
Length = 1150
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 324/529 (61%), Positives = 383/529 (72%), Gaps = 33/529 (6%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD------ 75
W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S I+++ E+QH G+ +
Sbjct: 2 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYLL 61
Query: 76 -FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE----- 129
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +IK G + E
Sbjct: 62 KFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDGDEPMESQHQK 121
Query: 130 -----VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVY 184
+PIMLRS+YC L + + LTEL ECP D GGYFIINGSEKVLIAQEKM+TN VY
Sbjct: 122 TFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 181
Query: 185 VFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHATLPYIRT 242
VF + KYAY AE+ S E +RP ST++V M++R S K + GQ I A +PYI+
Sbjct: 182 VFSMKD-GKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIMPYIKQ 240
Query: 243 EIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRG 298
EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF IQ Q +IG RG
Sbjct: 241 EIPIMIVFRALGFVADRDILEHIIYDFDDQEMMEMVKPSLDEAFVIQEQNVALNFIGARG 300
Query: 299 ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDR 358
A GVT+EK IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALGRR DDR
Sbjct: 301 ARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 360
Query: 359 DHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLK 418
DHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK K IT GL+
Sbjct: 361 DHYGNKRLDLAGPLLAFLFRGLFKTLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLR 420
Query: 419 YSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQ 469
YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKPRQLHN+
Sbjct: 421 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTL 480
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 481 WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 529
>gi|384497209|gb|EIE87700.1| DNA-directed RNA polymerase II subunit RPB2 [Rhizopus delemar RA
99-880]
Length = 1215
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 317/569 (55%), Positives = 403/569 (70%), Gaps = 56/569 (9%)
Query: 1 MMMEEERLEEDE----EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDE 56
MM E E DE +E TQE+ W VI ++FEEKGLVRQQLDSFDEF QNTMQE+VDE
Sbjct: 10 MMAENEYFLPDEQMYEDESITQEDCWTVIGSFFEEKGLVRQQLDSFDEFVQNTMQELVDE 69
Query: 57 SADIEIRPESQHNPGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYS 109
++++ + QH G DF +IYLSKP MTE+DG + +F + AR+RNLTY+
Sbjct: 70 NSNLVL----QHVGGDGDVTKRYIIDFGQIYLSKPTMTEADGSSQPMFPQEARIRNLTYA 125
Query: 110 APLYVDVTKRV-------------------IKKGHDGE--------EVPIMLRSSYCTLY 142
APLY+D++KR I +G + +VP+MLRSSYC L+
Sbjct: 126 APLYIDMSKRTQIARPQDPNNPITNPNDFFIDEGSEAPPKTKVFVGKVPVMLRSSYCILH 185
Query: 143 QNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCS 202
+K + +L EC +D GGYF+INGSEKVLIAQE+M+TN VYVF K P +++ AE+ S
Sbjct: 186 DMPEKEMHDLNECSFDMGGYFVINGSEKVLIAQERMATNTVYVFSKAPPATFSFSAEIRS 245
Query: 203 MAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDIL 262
E ++ S +F+ M+ R SA+ G++GQ+I A LPYIR+EIP++I+FRALG +D D+L
Sbjct: 246 QPEKGSKNASPLFIKMM-RPSAERGTAGQFIRAALPYIRSEIPVVIVFRALGQVSDRDVL 304
Query: 263 EHICYDFQDTQMMELLRPSLEEAFFIQNQ----QYIGKRGATVGVTREKMIKYAKEILQK 318
EHICYD D +M+ELL+PS+EEAF IQ+Q +IGKRG TVG TRE+ IKYA EILQK
Sbjct: 305 EHICYDRNDYEMLELLKPSIEEAFVIQDQDVALDFIGKRGTTVGATRERRIKYASEILQK 364
Query: 319 EMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 378
E+LPHVGT ET+K+Y+FG++IHRLLL AL RR DDRDHYG KR+DLAGPL+ GLFR
Sbjct: 365 ELLPHVGTAYKTETRKSYFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGPLMAGLFR 424
Query: 379 TLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAG 437
LFRKLT DV Y+QKC+++ ++ NL A+K+ TIT GLKYSLATGNWG Q A RAG
Sbjct: 425 ILFRKLTRDVAKYLQKCIESSREFNLSLAVKSNTITNGLKYSLATGNWGDQKKAMQARAG 484
Query: 438 VSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 489
VSQVLN T+AST ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKN
Sbjct: 485 VSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKN 544
Query: 490 LALMVYITIGSAAYPILEFLEEWGTENFE 518
LALM YI++GS+A P++ FLEEW EN E
Sbjct: 545 LALMSYISVGSSANPLIMFLEEWAMENLE 573
>gi|380024797|ref|XP_003696177.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Apis florea]
Length = 1175
Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust.
Identities = 324/552 (58%), Positives = 395/552 (71%), Gaps = 37/552 (6%)
Query: 3 MEEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
+EE++ ++++ EE + QE W VI+AYF+EKGLVRQQLDSFDEF + ++Q IV++S
Sbjct: 4 LEEDQYDDEDAEEISSKLWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSP 63
Query: 59 DIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
I+++ E+QH G+ + F +IYLSKP E DG + + ARL NLTYSAP
Sbjct: 64 QIDLQAEAQHTSGEIENPVRHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLXNLTYSAP 123
Query: 112 LYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
LYVD+TK ++K G D E +PIMLRS YC L S + LTEL ECP D GG
Sbjct: 124 LYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGG 183
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIINGSEKVLIAQEKM+TN VYVF + KYAY +E+ S E +RP ST+++ M+++
Sbjct: 184 YFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKSEIRSCLEHSSRPTSTLWINMMAK 242
Query: 222 TSA--KGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
+ A K + GQ I A +PYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++
Sbjct: 243 SGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVK 302
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
PSL+EAF IQ Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKA
Sbjct: 303 PSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFCETKKA 362
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ G+++HRLL +LGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK
Sbjct: 363 YFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKF 422
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
+D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHL 482
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PIL
Sbjct: 483 RRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 542
Query: 507 EFLEEWGTENFE 518
EFLEEW EN E
Sbjct: 543 EFLEEWSMENLE 554
>gi|324120618|dbj|BAJ78700.1| RNA polymerase II second largest subunit [Aposthonia japonica]
Length = 1150
Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust.
Identities = 324/529 (61%), Positives = 382/529 (72%), Gaps = 33/529 (6%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS------- 74
W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S I+++ E+QH G+
Sbjct: 2 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHASGEIETPPRYLL 61
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE----- 129
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +++ G + E
Sbjct: 62 KFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVRDGEEPIETQHQK 121
Query: 130 -----VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVY 184
+PIMLRS+YC L + + LTEL ECP D GGYFIINGSEKVLIAQEKM+TN VY
Sbjct: 122 TFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 181
Query: 185 VFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHATLPYIRT 242
VF + KYAY E+ S E +RP ST++V M++R S K + GQ I A LPYIR
Sbjct: 182 VFSMKD-GKYAYKTEIRSCQEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIRQ 240
Query: 243 EIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRG 298
EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF IQ Q +IG RG
Sbjct: 241 EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG 300
Query: 299 ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDR 358
A GVT+EK IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALGRR DDR
Sbjct: 301 ARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 360
Query: 359 DHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLK 418
DHYGNKRLDLAGPLL LFR LF+ LT +VR Y QK +D GKD NL+ AIK K IT GL+
Sbjct: 361 DHYGNKRLDLAGPLLAFLFRGLFKNLTKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLR 420
Query: 419 YSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQ 469
YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKPRQLHN+
Sbjct: 421 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTL 480
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 481 WGMICPAETPEGAAVGLVKNLALMAYISVGSQPAPILEFLEEWSMENLE 529
>gi|324120660|dbj|BAJ78721.1| RNA polymerase II second largest subunit [Vespa analis insularis]
Length = 1175
Score = 632 bits (1631), Expect = e-178, Method: Compositional matrix adjust.
Identities = 325/552 (58%), Positives = 395/552 (71%), Gaps = 37/552 (6%)
Query: 3 MEEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
+E+++ ++++ EE + QE W VI+AYF+EKGLVRQQLDSFDEF + ++Q IV++S
Sbjct: 4 LEDDQYDDEDAEEISSKLWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSP 63
Query: 59 DIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
I+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAP
Sbjct: 64 QIDLQAEAQHTSGEIENPVRHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAP 123
Query: 112 LYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
LYVD+TK + K G D E +PIMLRS YC L S + LTEL ECP D GG
Sbjct: 124 LYVDITKTIEKDGEDPIETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGG 183
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIINGSEKVLIAQEKM+TN VYVF + KYAY AE+ S E +RP ST+++ M+++
Sbjct: 184 YFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKAEIRSCLEHSSRPTSTLWINMMAK 242
Query: 222 TSA--KGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
+ A K + GQ I A +PYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++
Sbjct: 243 SGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVK 302
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
PSL+EAF IQ Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKA
Sbjct: 303 PSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFCETKKA 362
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ G+++HRLL +LGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK
Sbjct: 363 YFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKF 422
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
+D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 423 IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHL 482
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PIL
Sbjct: 483 RRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 542
Query: 507 EFLEEWGTENFE 518
EFLEEW EN E
Sbjct: 543 EFLEEWSMENLE 554
>gi|324120620|dbj|BAJ78701.1| RNA polymerase II second largest subunit [Galloisiana yuasai]
Length = 1175
Score = 632 bits (1631), Expect = e-178, Method: Compositional matrix adjust.
Identities = 324/536 (60%), Positives = 386/536 (72%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S I+++ E+QH G+
Sbjct: 20 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIE 79
Query: 75 D-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
+ F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK ++K+ +
Sbjct: 80 NPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTILKENEEP 139
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
E +PIMLRS+YC L + + LTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 140 VETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 199
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHA 235
M+TN VYVF + K+A+ AE+ S E +RP ST++V M++R S K + GQ I A
Sbjct: 200 MATNTVYVFSMKD-GKFAFKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIA 258
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF IQ Q
Sbjct: 259 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 318
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALG
Sbjct: 319 NFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALG 378
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK K
Sbjct: 379 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTK 438
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 439 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 498
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 499 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 554
>gi|384498030|gb|EIE88521.1| DNA-directed RNA polymerase II subunit RPB2 [Rhizopus delemar RA
99-880]
Length = 1193
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 313/554 (56%), Positives = 397/554 (71%), Gaps = 52/554 (9%)
Query: 12 EEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPG 71
EEE TQE+ W VI ++FEEKGLVRQQLDSFDEF QNTMQE+VDE++++ + QH G
Sbjct: 3 EEEPITQEDCWTVIGSFFEEKGLVRQQLDSFDEFVQNTMQELVDENSNLVL----QHVGG 58
Query: 72 QQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV-IKK 123
DF +IYLSKP MTE+DG + +F + AR+RNLTY+APLY+D++KR I +
Sbjct: 59 DGDVTKRYIIDFGQIYLSKPTMTEADGSSQPMFPQEARIRNLTYAAPLYIDMSKRTQIAR 118
Query: 124 GHDGEE--------------------------VPIMLRSSYCTLYQNSQKALTELGECPY 157
D + VP+MLRSSYC L+ +K + +L EC +
Sbjct: 119 PQDPNDPRTNPNDLFVDEGSEAPPKTKVFVGKVPVMLRSSYCILHDMPEKEMHDLNECSF 178
Query: 158 DEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVP 217
D GGYF+INGSEKVLIAQE+M+TN VYVF K P +++ AE+ S E ++ S +F+
Sbjct: 179 DMGGYFVINGSEKVLIAQERMATNTVYVFSKAPPATFSFSAEIRSQPEKGSKNASPLFIK 238
Query: 218 MLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMEL 277
M+ R SA+ G++GQ+I A LPYIR+EIP++I+FRALG +D D+LEHICYD D +M+EL
Sbjct: 239 MM-RPSAERGTAGQFIRAALPYIRSEIPVVIVFRALGQVSDRDVLEHICYDRNDYEMLEL 297
Query: 278 LRPSLEEAFFIQNQ----QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETK 333
L+PS+EEAF IQ+Q +IGKRG TVG TRE+ IKYA EILQKE+LPHVGT ET+
Sbjct: 298 LKPSIEEAFVIQDQDVALDFIGKRGTTVGATRERRIKYASEILQKELLPHVGTAYKTETR 357
Query: 334 KAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQ 393
K+Y+FG++IHRLLL AL RR DDRDHYG KR+DLAGPL+ GLFR LFRKLT DV Y+Q
Sbjct: 358 KSYFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGPLMAGLFRLLFRKLTRDVAKYLQ 417
Query: 394 KCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFT 452
KC+++ ++ NL A+K+ TIT GLKYSLATGNWG Q A RAGVSQVLN T+AST +
Sbjct: 418 KCIESSREFNLSLAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLS 477
Query: 453 YY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYP 504
+ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YI++GS+A P
Sbjct: 478 HLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYISVGSSANP 537
Query: 505 ILEFLEEWGTENFE 518
++ FLEEW EN E
Sbjct: 538 LIMFLEEWAMENLE 551
>gi|324120646|dbj|BAJ78714.1| RNA polymerase II second largest subunit [Gynaikothrips ficorum]
Length = 1150
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 323/529 (61%), Positives = 383/529 (72%), Gaps = 33/529 (6%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS------- 74
W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S I+++ E+QH G+
Sbjct: 2 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTTGEVETPPRYLL 61
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE------ 128
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +I++G D
Sbjct: 62 KFEQIYLSKPTHWEKDGAPSAMMPNEARLRNLTYSAPLYVDITKTIIREGEDQVVTQNPK 121
Query: 129 ----EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVY 184
++PIMLRS+YC L + + LTEL ECP D GGYFIINGSEKVLIAQEKM+TN VY
Sbjct: 122 TFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 181
Query: 185 VFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHATLPYIRT 242
VF + K+AY +E+ S E +RP ST++V M++R S K + GQ I A LPYI+
Sbjct: 182 VFAMKD-GKFAYKSEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQ 240
Query: 243 EIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRG 298
EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF IQ Q +IG RG
Sbjct: 241 EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG 300
Query: 299 ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDR 358
A GVT+EK IKYAKEILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALGRR DDR
Sbjct: 301 ARPGVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 360
Query: 359 DHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLK 418
DHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK K IT GL+
Sbjct: 361 DHYGNKRLDLAGPLLAFLFRALFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLR 420
Query: 419 YSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQ 469
YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKPRQLHN+
Sbjct: 421 YSLATGNWGDQKKAHMARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTL 480
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 481 WGMVCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 529
>gi|324120656|dbj|BAJ78719.1| RNA polymerase II second largest subunit [Metylophorus sp. E-43]
Length = 1176
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 324/536 (60%), Positives = 385/536 (71%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E QE W VI++YF+EKGLVRQQLDSFDEF Q ++Q IV++S I+++ E+QH G+
Sbjct: 19 ELWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIE 78
Query: 75 -------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK ++K+G +
Sbjct: 79 HPPHYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKEGEEP 138
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
E +PIMLRS+YC L + + LTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 139 IETQHQKSFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 198
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHA 235
M+TN VYVF + KYAY E+ S E +RP ST++V M++R S K + GQ I A
Sbjct: 199 MATNTVYVFSMKD-GKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIA 257
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF IQ Q
Sbjct: 258 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 317
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALG
Sbjct: 318 NFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALG 377
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR + QK +D GKD NL+ AIK K
Sbjct: 378 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMFAQKFIDRGKDFNLELAIKTK 437
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 438 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 497
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 498 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 553
>gi|324120614|dbj|BAJ78698.1| RNA polymerase II second largest subunit [Isonychia japonica]
Length = 1150
Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust.
Identities = 323/529 (61%), Positives = 383/529 (72%), Gaps = 33/529 (6%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS------- 74
W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S I+++ E+QH G+
Sbjct: 2 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIETPPRYLL 61
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE----- 129
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK V+K+G D +
Sbjct: 62 KFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVVKEGEDPIDTQHQK 121
Query: 130 -----VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVY 184
+PIMLRS+YC L + + LTEL ECP D GGYFIINGSEKVLIAQEKM+TN VY
Sbjct: 122 TFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 181
Query: 185 VFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRT--SAKGGSSGQYIHATLPYIRT 242
VF + K+AY AE+ S E +RP ST++V M++R+ S K + GQ I A LPYI+
Sbjct: 182 VFAMKD-GKFAYKAEIRSCQEHSSRPTSTLWVNMMARSGQSIKKSAIGQRIIAILPYIKQ 240
Query: 243 EIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRG 298
EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF IQ Q +IG RG
Sbjct: 241 EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG 300
Query: 299 ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDR 358
A GVT+EK IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRLLL AL RR DDR
Sbjct: 301 ARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALSRRELDDR 360
Query: 359 DHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLK 418
DHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK K IT GL+
Sbjct: 361 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLR 420
Query: 419 YSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQ 469
YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKPRQLHN+
Sbjct: 421 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTL 480
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 481 WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 529
>gi|324120642|dbj|BAJ78712.1| RNA polymerase II second largest subunit [Reticulitermes speratus]
Length = 1150
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 322/529 (60%), Positives = 383/529 (72%), Gaps = 33/529 (6%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD------ 75
W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S I+++ E+QH G+ +
Sbjct: 2 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYLL 61
Query: 76 -FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE----- 129
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK ++K G D E
Sbjct: 62 KFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQK 121
Query: 130 -----VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVY 184
+PIMLRS+YC L + + LTEL ECP D GGYFIINGSEKVLIAQEKM+TN VY
Sbjct: 122 TFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 181
Query: 185 VFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHATLPYIRT 242
VF + K+A+ AE+ S E +RP ST++V M++R S K + GQ I A LPYI+
Sbjct: 182 VFSMKD-GKFAFKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQ 240
Query: 243 EIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRG 298
EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF IQ Q +IG RG
Sbjct: 241 EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG 300
Query: 299 ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDR 358
A GVT++K IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALGRR DDR
Sbjct: 301 ARPGVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 360
Query: 359 DHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLK 418
DHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK K IT GL+
Sbjct: 361 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRIYAQKFIDRGKDFNLELAIKTKIITDGLR 420
Query: 419 YSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQ 469
YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKPRQLHN+
Sbjct: 421 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTL 480
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 481 WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 529
>gi|345495600|ref|XP_003427537.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2 [Nasonia vitripennis]
Length = 1174
Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust.
Identities = 327/554 (59%), Positives = 392/554 (70%), Gaps = 37/554 (6%)
Query: 1 MMMEEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDE 56
M EE+ E+++ EE + QE W VI+AYF+EKGLVRQQLDSFDEF + ++Q IV++
Sbjct: 1 MYAEEDHYEDEDTEEISSKVWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVED 60
Query: 57 SADIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYS 109
S IE++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYS
Sbjct: 61 SPQIELQAEAQHTTGEIENPTKHLVKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYS 120
Query: 110 APLYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDE 159
APLYVD+TK + K G + E +PIMLRS YC L S + LTEL ECP D
Sbjct: 121 APLYVDITKTIEKDGEEPIETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDP 180
Query: 160 GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPML 219
GGYFIINGSEKVLIAQEKM+TN VYVF + KYA+ E+ S E +RP ST+++ M+
Sbjct: 181 GGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAFKCEIRSCLEHSSRPTSTLWINMM 239
Query: 220 SRTSA--KGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMEL 277
+++ A K + GQ I A LPYIR EIPI+I+FRALGF AD DILEHI YDF D +MME+
Sbjct: 240 AKSGANIKKSAIGQRIVAVLPYIRQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEM 299
Query: 278 LRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETK 333
++PSL+EAF IQ Q +IG RGA GVT++K IKYAKEILQKE LPHVG DFCETK
Sbjct: 300 VKPSLDEAFVIQEQNVALNFIGTRGARPGVTKDKRIKYAKEILQKETLPHVGISDFCETK 359
Query: 334 KAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQ 393
KAY+ G+++HRLL +LGRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y Q
Sbjct: 360 KAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQ 419
Query: 394 KCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFT 452
K +D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST +
Sbjct: 420 KFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHLARAGVSQVLNRLTFASTLS 479
Query: 453 YY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYP 504
+ KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS P
Sbjct: 480 HLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSP 539
Query: 505 ILEFLEEWGTENFE 518
ILEFLEEW EN E
Sbjct: 540 ILEFLEEWSMENLE 553
>gi|324120644|dbj|BAJ78713.1| RNA polymerase II second largest subunit [Thrips palmi]
Length = 1150
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 323/530 (60%), Positives = 382/530 (72%), Gaps = 33/530 (6%)
Query: 21 AWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS------ 74
W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S I+++ E+QH G+
Sbjct: 1 CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIETPPRYL 60
Query: 75 -DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE---- 129
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK ++K+G + E
Sbjct: 61 LKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKEGEEPIETQHQ 120
Query: 130 ------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHV 183
+PIMLRS+YC L + + LTEL ECP D GGYFIINGSEKVLIAQEKM+TN V
Sbjct: 121 KTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV 180
Query: 184 YVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHATLPYIR 241
YVF + K+AY E+ S E +RP ST++V M++R S K + GQ I A LPYI+
Sbjct: 181 YVFSMKD-GKFAYKCEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIK 239
Query: 242 TEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKR 297
EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF IQ Q +IG R
Sbjct: 240 QEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGAR 299
Query: 298 GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDD 357
GA GVT+EK IKYAKEILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALGRR DD
Sbjct: 300 GARPGVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDD 359
Query: 358 RDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGL 417
RDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK K IT GL
Sbjct: 360 RDHYGNKRLDLAGPLLAFLFRALFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGL 419
Query: 418 KYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNS 468
+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKPRQLHN+
Sbjct: 420 RYSLATGNWGDQKKAHLARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNT 479
Query: 469 QWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 480 LWGMVCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 529
>gi|324120672|dbj|BAJ78727.1| RNA polymerase II second largest subunit [Lucidina biplagiata]
Length = 1175
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 321/536 (59%), Positives = 385/536 (71%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S I+++ E+QH G+
Sbjct: 20 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEVE 79
Query: 75 D-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
+ F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK ++K G +
Sbjct: 80 NPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEEP 139
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
E +PIMLRS+YC L + + L EL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 140 IETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLMELNECPLDPGGYFIINGSEKVLIAQEK 199
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHA 235
M+TN VYVF + KYA+ +E+ S E +RP ST++V M++R + K + GQ I A
Sbjct: 200 MATNTVYVFAMKD-GKYAFKSEIRSCLEHSSRPTSTLWVNMMARGGQAIKKAAIGQRIIA 258
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPYI+ EIP++++FRALGF AD DILEHI YDF+D +MME+++PSL+EAF IQ Q
Sbjct: 259 ILPYIKQEIPVMVVFRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVAL 318
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALG
Sbjct: 319 NFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALG 378
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL AIK K
Sbjct: 379 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTK 438
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 439 LITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 498
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 499 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 554
>gi|194745991|ref|XP_001955468.1| GF16238 [Drosophila ananassae]
gi|190628505|gb|EDV44029.1| GF16238 [Drosophila ananassae]
Length = 1176
Score = 629 bits (1622), Expect = e-177, Method: Compositional matrix adjust.
Identities = 324/536 (60%), Positives = 382/536 (71%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ-- 72
E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S IE++ E+QH G+
Sbjct: 21 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVE 80
Query: 73 -----QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +G D
Sbjct: 81 TPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGQDP 140
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
E +PIMLRS+YC L Q + + LTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 141 IETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 200
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS--AKGGSSGQYIHA 235
M+TN VYVF + KYA+ E+ S E +RP ST++V M++R S K + GQ I A
Sbjct: 201 MATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIA 259
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF +Q Q
Sbjct: 260 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVAL 319
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVT++K IKYAKEILQKEMLPHVG DFCETKKAY+ G+++HRLLL +LG
Sbjct: 320 NFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 379
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK
Sbjct: 380 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTN 439
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 440 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 499
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 500 RQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 555
>gi|195392246|ref|XP_002054770.1| RNA polymerase II 140kD subunit [Drosophila virilis]
gi|194152856|gb|EDW68290.1| RNA polymerase II 140kD subunit [Drosophila virilis]
Length = 1176
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 324/536 (60%), Positives = 382/536 (71%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ-- 72
E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S IE++ E+QH G+
Sbjct: 21 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVE 80
Query: 73 -----QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +G D
Sbjct: 81 TPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGMDP 140
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
E +PIMLRS+YC L Q + + LTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 141 VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 200
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS--AKGGSSGQYIHA 235
M+TN VYVF + KYA+ E+ S E +RP ST++V M++R S K + GQ I A
Sbjct: 201 MATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIA 259
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF +Q Q
Sbjct: 260 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVAL 319
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVT++K IKYAKEILQKEMLPHVG DFCETKKAY+ G+++HRLLL +LG
Sbjct: 320 NFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 379
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK
Sbjct: 380 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTN 439
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 440 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 499
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 500 RQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 555
>gi|194900689|ref|XP_001979888.1| GG16840 [Drosophila erecta]
gi|190651591|gb|EDV48846.1| GG16840 [Drosophila erecta]
Length = 1176
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 324/536 (60%), Positives = 382/536 (71%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ-- 72
E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S IE++ E+QH G+
Sbjct: 21 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVE 80
Query: 73 -----QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +G D
Sbjct: 81 TPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP 140
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
E +PIMLRS+YC L Q + + LTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 141 VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 200
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS--AKGGSSGQYIHA 235
M+TN VYVF + KYA+ E+ S E +RP ST++V M++R S K + GQ I A
Sbjct: 201 MATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIA 259
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF +Q Q
Sbjct: 260 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVAL 319
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVT++K IKYAKEILQKEMLPHVG DFCETKKAY+ G+++HRLLL +LG
Sbjct: 320 NFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 379
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK
Sbjct: 380 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTN 439
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 440 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 499
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 500 RQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 555
>gi|195109863|ref|XP_001999501.1| GI23040 [Drosophila mojavensis]
gi|193916095|gb|EDW14962.1| GI23040 [Drosophila mojavensis]
Length = 1176
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 324/536 (60%), Positives = 382/536 (71%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ-- 72
E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S IE++ E+QH G+
Sbjct: 21 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVE 80
Query: 73 -----QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +G D
Sbjct: 81 TPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGMDP 140
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
E +PIMLRS+YC L Q + + LTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 141 VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 200
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS--AKGGSSGQYIHA 235
M+TN VYVF + KYA+ E+ S E +RP ST++V M++R S K + GQ I A
Sbjct: 201 MATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIA 259
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF +Q Q
Sbjct: 260 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVAL 319
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVT++K IKYAKEILQKEMLPHVG DFCETKKAY+ G+++HRLLL +LG
Sbjct: 320 NFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 379
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK
Sbjct: 380 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTN 439
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 440 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 499
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 500 RQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 555
>gi|195501705|ref|XP_002097907.1| GE24221 [Drosophila yakuba]
gi|194184008|gb|EDW97619.1| GE24221 [Drosophila yakuba]
Length = 1176
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 324/536 (60%), Positives = 382/536 (71%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ-- 72
E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S IE++ E+QH G+
Sbjct: 21 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVE 80
Query: 73 -----QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +G D
Sbjct: 81 TPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP 140
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
E +PIMLRS+YC L Q + + LTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 141 VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 200
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS--AKGGSSGQYIHA 235
M+TN VYVF + KYA+ E+ S E +RP ST++V M++R S K + GQ I A
Sbjct: 201 MATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIA 259
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF +Q Q
Sbjct: 260 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVAL 319
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVT++K IKYAKEILQKEMLPHVG DFCETKKAY+ G+++HRLLL +LG
Sbjct: 320 NFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 379
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK
Sbjct: 380 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTN 439
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 440 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 499
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 500 RQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 555
>gi|195570991|ref|XP_002103487.1| GD18948 [Drosophila simulans]
gi|194199414|gb|EDX12990.1| GD18948 [Drosophila simulans]
Length = 1176
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 324/536 (60%), Positives = 382/536 (71%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ-- 72
E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S IE++ E+QH G+
Sbjct: 21 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVE 80
Query: 73 -----QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +G D
Sbjct: 81 TPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP 140
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
E +PIMLRS+YC L Q + + LTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 141 VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 200
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS--AKGGSSGQYIHA 235
M+TN VYVF + KYA+ E+ S E +RP ST++V M++R S K + GQ I A
Sbjct: 201 MATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIA 259
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF +Q Q
Sbjct: 260 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVAL 319
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVT++K IKYAKEILQKEMLPHVG DFCETKKAY+ G+++HRLLL +LG
Sbjct: 320 NFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 379
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK
Sbjct: 380 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTN 439
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 440 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 499
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 500 RQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 555
>gi|195145272|ref|XP_002013620.1| GL24239 [Drosophila persimilis]
gi|198452242|ref|XP_001358686.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
gi|194102563|gb|EDW24606.1| GL24239 [Drosophila persimilis]
gi|198131848|gb|EAL27829.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
Length = 1176
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 324/536 (60%), Positives = 382/536 (71%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ-- 72
E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S IE++ E+QH G+
Sbjct: 21 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVE 80
Query: 73 -----QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +G D
Sbjct: 81 TPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP 140
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
E +PIMLRS+YC L Q + + LTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 141 VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 200
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS--AKGGSSGQYIHA 235
M+TN VYVF + KYA+ E+ S E +RP ST++V M++R S K + GQ I A
Sbjct: 201 MATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIA 259
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF +Q Q
Sbjct: 260 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVAL 319
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVT++K IKYAKEILQKEMLPHVG DFCETKKAY+ G+++HRLLL +LG
Sbjct: 320 NFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 379
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK
Sbjct: 380 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTN 439
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 440 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 499
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 500 RQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 555
>gi|195446199|ref|XP_002070673.1| GK12191 [Drosophila willistoni]
gi|194166758|gb|EDW81659.1| GK12191 [Drosophila willistoni]
Length = 1176
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 324/536 (60%), Positives = 382/536 (71%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ-- 72
E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S IE++ E+QH G+
Sbjct: 21 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVE 80
Query: 73 -----QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +G D
Sbjct: 81 TPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP 140
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
E +PIMLRS+YC L Q + + LTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 141 VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 200
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS--AKGGSSGQYIHA 235
M+TN VYVF + KYA+ E+ S E +RP ST++V M++R S K + GQ I A
Sbjct: 201 MATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIA 259
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF +Q Q
Sbjct: 260 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVAL 319
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVT++K IKYAKEILQKEMLPHVG DFCETKKAY+ G+++HRLLL +LG
Sbjct: 320 NFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 379
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK
Sbjct: 380 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTN 439
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 440 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 499
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 500 RQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 555
>gi|195064711|ref|XP_001996619.1| GH19704 [Drosophila grimshawi]
gi|193892751|gb|EDV91617.1| GH19704 [Drosophila grimshawi]
Length = 1175
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 324/536 (60%), Positives = 382/536 (71%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ-- 72
E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S IE++ E+QH G+
Sbjct: 20 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVE 79
Query: 73 -----QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +G D
Sbjct: 80 TPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP 139
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
E +PIMLRS+YC L Q + + LTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 140 VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 199
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS--AKGGSSGQYIHA 235
M+TN VYVF + KYA+ E+ S E +RP ST++V M++R S K + GQ I A
Sbjct: 200 MATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIA 258
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF +Q Q
Sbjct: 259 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVAL 318
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVT++K IKYAKEILQKEMLPHVG DFCETKKAY+ G+++HRLLL +LG
Sbjct: 319 NFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 378
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK
Sbjct: 379 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTN 438
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 439 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 498
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 499 RQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 554
>gi|17136444|ref|NP_476706.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
gi|195329082|ref|XP_002031240.1| GM24152 [Drosophila sechellia]
gi|12644108|sp|P08266.2|RPB2_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 140 kDa polypeptide
gi|7299847|gb|AAF55024.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
gi|27819971|gb|AAO25022.1| LD22387p [Drosophila melanogaster]
gi|194120183|gb|EDW42226.1| GM24152 [Drosophila sechellia]
Length = 1176
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 324/536 (60%), Positives = 382/536 (71%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ-- 72
E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S IE++ E+QH G+
Sbjct: 21 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVE 80
Query: 73 -----QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +G D
Sbjct: 81 TPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP 140
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
E +PIMLRS+YC L Q + + LTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 141 VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 200
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS--AKGGSSGQYIHA 235
M+TN VYVF + KYA+ E+ S E +RP ST++V M++R S K + GQ I A
Sbjct: 201 MATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIA 259
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF +Q Q
Sbjct: 260 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVAL 319
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVT++K IKYAKEILQKEMLPHVG DFCETKKAY+ G+++HRLLL +LG
Sbjct: 320 NFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 379
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK
Sbjct: 380 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTN 439
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 440 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 499
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 500 RQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 555
>gi|219116262|ref|XP_002178926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409693|gb|EEC49624.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1212
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 314/566 (55%), Positives = 390/566 (68%), Gaps = 54/566 (9%)
Query: 4 EEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR 63
E + + + +E TQE+AWAVISAYFEEKGLVRQQLDSFDEF QNTMQE+VD+S DI +
Sbjct: 14 EGDEVMDIDEIPVTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGDIRVS 73
Query: 64 PESQHNPGQQSD-----------------FAEIYLSKPMMTESDGETATLFLKAARLRNL 106
PE QH G + F ++YLSKP E DG +F ARLRN+
Sbjct: 74 PEIQHMVGYDDEAYDREQEKETKFVFEIHFGQVYLSKPTTVEKDGTITNMFPHEARLRNM 133
Query: 107 TYSAPLYVDVTKRVIKKGHD----------GEEV-------------PIMLRSSYCTLYQ 143
TYSAPLYVDV + G + GE V PIMLRS +C L
Sbjct: 134 TYSAPLYVDVDLNQYQVGREVNVNDPSEDLGEPVATEHAKKEFLGYVPIMLRSLFCVLSD 193
Query: 144 NSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSM 203
L++LGEC YD+GGYF+INGSEKV+IAQE++S NHVY FKK+QP+K+++V E S
Sbjct: 194 KDDADLSDLGECVYDQGGYFVINGSEKVIIAQERLSNNHVYAFKKKQPSKFSWVIETRSQ 253
Query: 204 AESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILE 263
E+ RP ST+++ M + +G G I +TLPYIRT+IP++I+FRALG+ AD DI+E
Sbjct: 254 VENSTRPVSTLYIQMYHK-GGRGAIEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIE 312
Query: 264 HICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKE 319
H+ YD D +MM+L RPSLEEAF IQ Q +IG+RG+ VT+E ++YA+ ILQKE
Sbjct: 313 HVVYDLTDGEMMDLFRPSLEEAFVIQRQDVALDFIGRRGSARDVTKEDRMRYAQAILQKE 372
Query: 320 MLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRT 379
+LPHVGT + CETKK ++ G+ +H+LL+C LGR EDDRDH+G KRLDLAGPLLGGLFR
Sbjct: 373 VLPHVGTEEHCETKKGFFIGYAVHKLLMCRLGRAEEDDRDHFGKKRLDLAGPLLGGLFRV 432
Query: 380 LFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVS 439
LFRKLT DVR ++Q+C+D GK N+ AIK+ IT GLKYSLATGNWG A T+AGVS
Sbjct: 433 LFRKLTKDVRKHLQRCLDEGKHFNIGAAIKSNHITDGLKYSLATGNWGDKGMA-TKAGVS 491
Query: 440 QVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 491
QVLN LTYAS+ ++ + K AKPRQLHN+ WGM+CPAETPEGQA GLVKNLA
Sbjct: 492 QVLNRLTYASSLSHLRRCNTPLARTGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLA 551
Query: 492 LMVYITIGSAAYPILEFLEEWGTENF 517
LM YIT G+A P+LEFLEE+ TEN
Sbjct: 552 LMAYITTGTAQVPVLEFLEEFSTENL 577
>gi|226480014|emb|CAX73303.1| putative DNA-directed RNA polymerase II 140 kDa polypeptide (RNA
polymerase II subunit 2) (RPB2) [Schistosoma japonicum]
Length = 1196
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 322/548 (58%), Positives = 395/548 (72%), Gaps = 35/548 (6%)
Query: 5 EERLEEDEE--EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI 62
+E++ ED+E + QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q+IV++S IE+
Sbjct: 26 DEQMNEDDEITPDMWQEACWIVISSYFDEKGLVRQQLDSFDEFIQTSIQKIVEDSPIIEL 85
Query: 63 RPESQH------NPGQ-QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVD 115
+ E+QH NP Q + F +IYLSK E DG + + ARLRNLTY+APLYVD
Sbjct: 86 QAEAQHSGGILENPVQYRLKFEQIYLSKATHWEKDGSSVPMTPNDARLRNLTYAAPLYVD 145
Query: 116 VTKRVIKKGHDGEE---------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIIN 166
V K++I+ + E+ +PIMLRS+YC L S + L EL ECP D GGYFIIN
Sbjct: 146 VMKKIIRDETEEEKPLEKKFIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPGGYFIIN 205
Query: 167 GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKG 226
GSEKVLIAQEKM+TN VYVFK++ +KYAY E+ S E +RP ST+++ M++R G
Sbjct: 206 GSEKVLIAQEKMATNTVYVFKQKD-SKYAYKTEIRSCLEHSSRPASTLWINMMARGGKDG 264
Query: 227 ---GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLE 283
+ GQ I A LPYI+ EIP++I+FRALGF AD DILEHI YDF DT+M E+++PSL+
Sbjct: 265 SKRATIGQRIVAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMREMIKPSLD 324
Query: 284 EAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFG 339
+AF IQ Q+ +IG RGA GVT+EK IKYAKEILQKE LPHVG DFCET+KAY+ G
Sbjct: 325 DAFVIQEQKVALNFIGSRGARPGVTKEKRIKYAKEILQKETLPHVGVSDFCETRKAYFLG 384
Query: 340 HIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNG 399
+++HRLLL AL RR DDRDHYGNKRLDLAGPLL LFR LFR LT ++R Y QK +D G
Sbjct: 385 YMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEIRLYAQKFIDKG 444
Query: 400 KDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW- 457
KD NL+ AI+++ IT GLKYSLATGNWG Q A R GVSQVLN LT+AST ++
Sbjct: 445 KDFNLELAIRSQIITDGLKYSLATGNWGDQKKANQARPGVSQVLNRLTFASTLSHLRRLN 504
Query: 458 -------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLE 510
KLA+PRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLE
Sbjct: 505 SPIGRDGKLARPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLE 564
Query: 511 EWGTENFE 518
EW EN E
Sbjct: 565 EWSMENLE 572
>gi|417413545|gb|JAA53095.1| Putative rna polymerase i second largest subunit, partial [Desmodus
rotundus]
Length = 1144
Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust.
Identities = 320/525 (60%), Positives = 383/525 (72%), Gaps = 33/525 (6%)
Query: 26 SAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD-------FAE 78
S+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E+QH G+ + F +
Sbjct: 1 SSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQ 60
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE--------- 129
IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G + +
Sbjct: 61 IYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIG 120
Query: 130 -VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKK 188
+PIMLRS+YC L + + L EL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K
Sbjct: 121 KIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAK 180
Query: 189 RQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHATLPYIRTEIPI 246
+ +KYAY E S E+ +RP STI+V ML+R AK + GQ I ATLPYI+ E+PI
Sbjct: 181 KD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPI 239
Query: 247 IILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVG 302
II+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF IQ Q +IG RGA G
Sbjct: 240 IIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPG 299
Query: 303 VTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYG 362
VT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++HRLLL ALGRR DDRDHYG
Sbjct: 300 VTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYG 359
Query: 363 NKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLA 422
NKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD NL+ AIK + I+ GLKYSLA
Sbjct: 360 NKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLA 419
Query: 423 TGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMM 473
TGNWG Q A RAGVSQVLN LT+AST ++ KLAKPRQLHN+ WGM+
Sbjct: 420 TGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMV 479
Query: 474 CPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 480 CPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 524
>gi|224003383|ref|XP_002291363.1| DNA directed RNA polymerase II, second largest subunit
[Thalassiosira pseudonana CCMP1335]
gi|220973139|gb|EED91470.1| DNA directed RNA polymerase II, second largest subunit
[Thalassiosira pseudonana CCMP1335]
Length = 1196
Score = 625 bits (1612), Expect = e-176, Method: Compositional matrix adjust.
Identities = 311/559 (55%), Positives = 388/559 (69%), Gaps = 56/559 (10%)
Query: 12 EEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPG 71
++ TQE+AWAVISAYFEEKGLVRQQLDSFDEF QNTMQE+VD+S I + PE QH G
Sbjct: 4 DDMPVTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGSIRVSPEIQHLVG 63
Query: 72 Q-----------------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYV 114
+ F ++YLSKP E DG +F ARLRNLTY+APLYV
Sbjct: 64 YDEANFDETMNSTTKKVFEVKFGQVYLSKPTTVEKDGTVTNMFPHEARLRNLTYAAPLYV 123
Query: 115 DVTKRVIKKGHD----------GEEV-------------PIMLRSSYCTLYQNSQKALTE 151
DVT + G+D GE V PIMLRS +C L L +
Sbjct: 124 DVTMNEYRVGNDVNVGDPAEDMGEPVSTEEARKEFLGYVPIMLRSLFCVLSDKDDAQLAD 183
Query: 152 LGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPP 211
LGEC YD+GGYF+INGSEKV++AQE+MS NHVY FKK+QP+K+++V E S E+ RP
Sbjct: 184 LGECIYDQGGYFVINGSEKVIVAQERMSNNHVYAFKKKQPSKFSWVIETRSQVENSTRPT 243
Query: 212 STIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQD 271
ST+++ M + KG G I +TLPYIRT+IP++I+FRALG+ AD DI+EH+ YD D
Sbjct: 244 STLYIQMYQK-GGKGAIEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTD 302
Query: 272 TQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTG 327
+MM+L RPSLEEAF IQ Q+ +IG+RG+ VT++ I+YA ILQKE+LPHVGT
Sbjct: 303 GEMMDLFRPSLEEAFVIQKQEVALDFIGRRGSARDVTKDDRIRYAAGILQKEVLPHVGTE 362
Query: 328 DFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGD 387
+ CETKK ++ G+ +H+LL+C LGR EDDRDH+G KRLDLAGPLLGGLFR LFRKLT D
Sbjct: 363 EHCETKKGFFLGYAVHKLLMCKLGRADEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLTKD 422
Query: 388 VRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLT 446
VR ++Q+C+D GK N+ AIK+ I+ GLKYSLATGNWG +GN ++AGVSQVLN LT
Sbjct: 423 VRKHLQRCLDEGKHFNIGAAIKSNHISDGLKYSLATGNWGDKGNT--SKAGVSQVLNRLT 480
Query: 447 YASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITI 498
YAS+ ++ + K AKPRQLHNS WGM+CPAETPEGQA GLVKN+ALM YIT
Sbjct: 481 YASSLSHLRRSNTPLARTGKQAKPRQLHNSHWGMVCPAETPEGQAVGLVKNMALMAYITT 540
Query: 499 GSAAYPILEFLEEWGTENF 517
G++ P++EFLEE+ TEN
Sbjct: 541 GTSQVPVMEFLEEFSTENL 559
>gi|324120668|dbj|BAJ78725.1| RNA polymerase II second largest subunit [Stichotrema asahinai]
Length = 1173
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 319/536 (59%), Positives = 382/536 (71%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E QE W VI+AYF+EKGLVRQQLDS+DEF Q ++Q +V++S IEI E+QH G+
Sbjct: 21 EVWQEACWIVINAYFDEKGLVRQQLDSYDEFIQMSVQRVVEDSPVIEIVAEAQHLAGEIE 80
Query: 75 D-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
+ F +IYLSKP E DG + L ARLRNLTYSAPLYVD++K +I+ G D
Sbjct: 81 NPPRYLLKFEQIYLSKPTHWEKDGAPSPLVPNEARLRNLTYSAPLYVDISKTIIRDGEDP 140
Query: 128 ----------EEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
++PIMLRS+YC L + + LTEL ECP+D G YFIINGSEKVLIAQEK
Sbjct: 141 IYKPHTKTFIGKIPIMLRSTYCLLNGMTDRDLTELNECPFDPGAYFIINGSEKVLIAQEK 200
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKG--GSSGQYIHA 235
M+TN VYVF + K+AY E+ S E +RP ST++V ML+R G S GQ I A
Sbjct: 201 MATNTVYVFAMKD-GKFAYKTEIRSCLEHSSRPTSTLWVNMLARGGQVGKRNSVGQRIIA 259
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPYI+ EIPI+++FRALGF AD DILEHI YDF+D +MME+++PSL+EAF IQ Q
Sbjct: 260 ILPYIKQEIPIMVVFRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNIAL 319
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVT+EK IKYAKEILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALG
Sbjct: 320 NFIGARGARPGVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALG 379
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDL GPLL LFR +F+ L +VR Y QK VD GKD N++ A+K +
Sbjct: 380 RRELDDRDHYGNKRLDLGGPLLSFLFRGMFKNLIKEVRLYAQKFVDRGKDFNIELAVKTR 439
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
I+ GL+YSLATGNW Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 440 IISDGLRYSLATGNWADQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 499
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 500 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 555
>gi|256073421|ref|XP_002573029.1| DNA-directed rna polymerase II subunit [Schistosoma mansoni]
Length = 1304
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 320/548 (58%), Positives = 393/548 (71%), Gaps = 35/548 (6%)
Query: 5 EERLEEDEE--EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI 62
+E+ ED+E + QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q+IV++S IE+
Sbjct: 134 DEQSNEDDEITPDMWQEACWIVISSYFDEKGLVRQQLDSFDEFIQTSIQKIVEDSPIIEL 193
Query: 63 RPESQHNPG-------QQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVD 115
+ E+QH+ G + F +IYLSK E DG + + ARLRNLTY+APLYVD
Sbjct: 194 QAEAQHSGGILETPVQYRLKFEQIYLSKATHWEKDGSSVPMTPNDARLRNLTYAAPLYVD 253
Query: 116 VTKRVIKKGHDGEE---------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIIN 166
V K++I+ + E+ +PIMLRS+YC L S + L EL ECP D GGYFIIN
Sbjct: 254 VMKKIIRDEIEEEKPLEKKFIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPGGYFIIN 313
Query: 167 GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKG 226
GSEKVLIAQEKM+TN VYVFK++ +KYAY E+ S E +RP ST+++ M++R G
Sbjct: 314 GSEKVLIAQEKMATNTVYVFKQKD-SKYAYKTEIRSCLEHSSRPASTLWINMMARGGKDG 372
Query: 227 ---GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLE 283
+ GQ I A LPYI+ EIP++I+FRALGF AD DILEHI YDF DT+M E+++PSL+
Sbjct: 373 SKRATIGQRIVAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMREMIKPSLD 432
Query: 284 EAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFG 339
+AF IQ Q+ +IG RGA GVT+EK IKYAKEILQKE LPHVG DFCET+KAY+ G
Sbjct: 433 DAFVIQEQKVALNFIGSRGARPGVTKEKRIKYAKEILQKETLPHVGVSDFCETRKAYFLG 492
Query: 340 HIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNG 399
+++HRLLL AL RR DDRDHYGNKRLDLAGPLL LFR LFR LT ++R Y QK +D G
Sbjct: 493 YMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEIRLYAQKFIDKG 552
Query: 400 KDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW- 457
KD NL+ AI+++ IT GLKYSLATGNWG Q A R GVSQVLN LT+AST ++
Sbjct: 553 KDFNLELAIRSQIITDGLKYSLATGNWGDQKKANQARPGVSQVLNRLTFASTLSHLRRLN 612
Query: 458 -------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLE 510
KLA+PRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLE
Sbjct: 613 SPIGRDGKLARPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLE 672
Query: 511 EWGTENFE 518
EW EN E
Sbjct: 673 EWSMENLE 680
>gi|324500827|gb|ADY40377.1| DNA-directed RNA polymerase II subunit RPB2 [Ascaris suum]
Length = 1173
Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust.
Identities = 329/550 (59%), Positives = 385/550 (70%), Gaps = 36/550 (6%)
Query: 4 EEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESAD 59
EE E DEEEE + QE W VISAYF+EKGLVRQQLDSFDEF Q +Q IV++S
Sbjct: 8 EEMPFEGDEEEEISSEQWQEACWVVISAYFDEKGLVRQQLDSFDEFIQMNVQRIVEDSPP 67
Query: 60 IEIRPESQHNPG---QQSDFA----EIYLSKPMMTESDGETATLFLKAARLRNLTYSAPL 112
+E++ E QH G + FA +IYLSKP E DG + ARLRNLTYS+PL
Sbjct: 68 VELQSEVQHFSGDIENPTKFALKLDQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSSPL 127
Query: 113 YVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGY 162
YVD+TK V + G D +E +PIMLRSSYC L S + LTEL ECP D GGY
Sbjct: 128 YVDITKTVSRDGEDPKESKYEKVFVGKIPIMLRSSYCMLSNMSDRDLTELNECPLDPGGY 187
Query: 163 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRT 222
FIINGSEKVLIAQEKM+TN VYVF + KYAY E S E+ +RP ST++V M++R
Sbjct: 188 FIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKTECRSCLENSSRPTSTLWVNMMARG 246
Query: 223 -SAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
S K + GQ I A LPYI+ EIPI+I+FRALGF +D DILEHI YDF+D +MME+++PS
Sbjct: 247 GSTKKSAMGQRIIAILPYIKQEIPIMIVFRALGFVSDHDILEHIIYDFEDPEMMEMVKPS 306
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+E+ IKYAKEILQKEMLPHVG DFCETKKAY+
Sbjct: 307 LDEAFVIQEQNVALNFIGARGAKPGVTKEQRIKYAKEILQKEMLPHVGISDFCETKKAYF 366
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL ALGRR DDRDH GNKRLDLAGPLL LFR LF+ L +VR QK ++
Sbjct: 367 IGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRALFKNLLKEVRLTAQKYIN 426
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
D L +K TIT GL YSLATGNWG Q A +RAGVSQVLN LTY +T ++
Sbjct: 427 KNGDFILDACVKTSTITRGLAYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRR 486
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+QWGM+CPAETPEGQA GLVKNLALM YI++GS PILEF
Sbjct: 487 CNSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEF 546
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 547 LEEWSMENLE 556
>gi|47208444|emb|CAF93098.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1217
Score = 622 bits (1605), Expect = e-175, Method: Compositional matrix adjust.
Identities = 315/525 (60%), Positives = 381/525 (72%), Gaps = 33/525 (6%)
Query: 26 SAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD-------FAE 78
S+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E+QH G+ + F +
Sbjct: 4 SSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEEPPRYLLKFEQ 63
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE--------- 129
IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +IK+G D +
Sbjct: 64 IYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKEGEDQIQTQHQKTFIG 123
Query: 130 -VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKK 188
+PIMLRS+YC L + + L EL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K
Sbjct: 124 KIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAK 183
Query: 189 RQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHATLPYIRTEIPI 246
+ +KYAY +E S E+ +RP STI+V M++R K + GQ I +TLPYIR E+PI
Sbjct: 184 KD-SKYAYTSECRSCLENSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTLPYIRQEVPI 242
Query: 247 IILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVG 302
II+FRALGF +D DILEHI YDF D +MME+++PSL+EAF IQ Q +IG RGA G
Sbjct: 243 IIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPG 302
Query: 303 VTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYG 362
VT+E+ IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++HRLLL ALGRR DDRDHYG
Sbjct: 303 VTKERRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYG 362
Query: 363 NKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLA 422
NKRLDLAGPLL LFR +F+ L ++R Y QK +D GKD NL+ AIK + I+ GLKYSLA
Sbjct: 363 NKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLA 422
Query: 423 TGNWGQ-GNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMM 473
TGNWG A RAGVSQVLN LT+AST ++ KLAKPRQLHN+ WGM+
Sbjct: 423 TGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMV 482
Query: 474 CPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 483 CPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 527
>gi|360044299|emb|CCD81846.1| putative dna-directed rna polymerase II subunit [Schistosoma
mansoni]
Length = 1158
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 316/533 (59%), Positives = 385/533 (72%), Gaps = 33/533 (6%)
Query: 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPG------ 71
QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q+IV++S IE++ E+QH+ G
Sbjct: 3 QEACWIVISSYFDEKGLVRQQLDSFDEFIQTSIQKIVEDSPIIELQAEAQHSGGILETPV 62
Query: 72 -QQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE- 129
+ F +IYLSK E DG + + ARLRNLTY+APLYVDV K++I+ + E+
Sbjct: 63 QYRLKFEQIYLSKATHWEKDGSSVPMTPNDARLRNLTYAAPLYVDVMKKIIRDEIEEEKP 122
Query: 130 --------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTN 181
+PIMLRS+YC L S + L EL ECP D GGYFIINGSEKVLIAQEKM+TN
Sbjct: 123 LEKKFIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPGGYFIINGSEKVLIAQEKMATN 182
Query: 182 HVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKG---GSSGQYIHATLP 238
VYVFK++ +KYAY E+ S E +RP ST+++ M++R G + GQ I A LP
Sbjct: 183 TVYVFKQKD-SKYAYKTEIRSCLEHSSRPASTLWINMMARGGKDGSKRATIGQRIVAILP 241
Query: 239 YIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YI 294
YI+ EIP++I+FRALGF AD DILEHI YDF DT+M E+++PSL++AF IQ Q+ +I
Sbjct: 242 YIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMREMIKPSLDDAFVIQEQKVALNFI 301
Query: 295 GKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
G RGA GVT+EK IKYAKEILQKE LPHVG DFCET+KAY+ G+++HRLLL AL RR
Sbjct: 302 GSRGARPGVTKEKRIKYAKEILQKETLPHVGVSDFCETRKAYFLGYMVHRLLLAALKRRD 361
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTIT 414
DDRDHYGNKRLDLAGPLL LFR LFR LT ++R Y QK +D GKD NL+ AI+++ IT
Sbjct: 362 VDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEIRLYAQKFIDKGKDFNLELAIRSQIIT 421
Query: 415 GGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQL 465
GLKYSLATGNWG Q A R GVSQVLN LT+AST ++ KLA+PRQL
Sbjct: 422 DGLKYSLATGNWGDQKKANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQL 481
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
HN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 482 HNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 534
>gi|452820468|gb|EME27510.1| DNA-directed RNA polymerase subunit [Galdieria sulphuraria]
Length = 1184
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 308/540 (57%), Positives = 386/540 (71%), Gaps = 41/540 (7%)
Query: 12 EEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPG 71
++EE TQE+AW VIS+YFEEKGLVRQQLDSFDEF NTMQEIVD D+ + E Q+ PG
Sbjct: 2 DDEEITQEDAWTVISSYFEEKGLVRQQLDSFDEFVTNTMQEIVDSQPDLVLTAEPQYLPG 61
Query: 72 QQSD---------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
Q+S+ F ++ LSKP TE GET L+ ARLRNLTYS+ LY DVT +
Sbjct: 62 QRSEDLDKRYVVSFGQLSLSKPTFTEDTGETRPLYPNQARLRNLTYSSALYCDVTVTEVN 121
Query: 123 KGHDGEE-------------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSE 169
EE +PIML+S +C LY L ELGECPYD+GGYF+INGSE
Sbjct: 122 LESGKEETSQHPPIRVFLGRIPIMLKSQFCHLYNLEPWDLAELGECPYDQGGYFVINGSE 181
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KV+IAQE+M++NHV+VFK+ QP+KY+YVAE S +S NRPPS + V +L R AKG S
Sbjct: 182 KVIIAQERMTSNHVFVFKRSQPSKYSYVAECRSAPDSGNRPPSLLQVKLL-RGGAKG-IS 239
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
GQYI ++PYI+ +IP+II+FRALGF D +I+ HICY+FQD ++M L PS+EEA IQ
Sbjct: 240 GQYIRVSMPYIKQDIPVIIVFRALGFENDREIMSHICYNFQDEELMTFLMPSIEEAAVIQ 299
Query: 290 NQ----QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRL 345
+ YIGKRG T+ VT++K I+YA+E+LQKE LPH+G G+ CE KK Y+ G++I+RL
Sbjct: 300 DHLVALDYIGKRGNTIAVTKDKRIQYAREVLQKEFLPHIGIGEGCELKKGYFLGYVINRL 359
Query: 346 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQ 405
L ALGRR DDRDHYGNKRLDLAGPLLG +FR R++ + RS +Q+ +D GK +NLQ
Sbjct: 360 LSTALGRREVDDRDHYGNKRLDLAGPLLGEMFRHHLRRVLKETRSILQRNLDTGKGLNLQ 419
Query: 406 FAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW-------- 457
A+K++TIT GLK +LATGNW +G R GVSQVLN LTYAST ++
Sbjct: 420 GAVKSRTITNGLKNALATGNWIRG-----RTGVSQVLNRLTYASTLSHLRRLNSPIGREG 474
Query: 458 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
KLAKPRQLHN+ WGM+CPAETPEGQACGL KNLALM YI++G+ + P++EFLEEW EN
Sbjct: 475 KLAKPRQLHNTHWGMICPAETPEGQACGLTKNLALMAYISVGTPSAPVIEFLEEWSMENL 534
>gi|196009726|ref|XP_002114728.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
gi|190582790|gb|EDV22862.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
Length = 1196
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 315/549 (57%), Positives = 391/549 (71%), Gaps = 48/549 (8%)
Query: 3 MEEERLEEDE-EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIE 61
+ ++ +++DE E + QE W VI+AYF EKGLVRQQLDSFDEF Q ++Q IV++S I+
Sbjct: 9 LTDQPIDDDEIETDLWQEACWVVINAYFNEKGLVRQQLDSFDEFIQMSVQRIVEDSPQID 68
Query: 62 IRPESQHNPGQ-------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYV 114
I+ E+QH+ + Q F +IYLSKP E DG + ARLRNLTYSAPLYV
Sbjct: 69 IQGETQHHSSEEQQSVRYQLKFDQIYLSKPTFWEKDGSPTPMMSNQARLRNLTYSAPLYV 128
Query: 115 DVTKRVIKKGHDGE----------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFI 164
D+TK + K ++ E ++PIMLRS+YC L+ + ALTEL ECP D GGYFI
Sbjct: 129 DITKTITKGNNEPEVKCHPKTFIGKIPIMLRSTYCLLHNMADHALTELNECPLDVGGYFI 188
Query: 165 INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRT-- 222
INGSEKVLIAQEKM++N VYVF+K++ +KYAYVAE+ S+ E+ +RP ST++V ML+R
Sbjct: 189 INGSEKVLIAQEKMASNTVYVFQKKE-SKYAYVAEIRSVTENSSRPTSTLWVSMLARGGG 247
Query: 223 SAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSL 282
++K GQ I A +PY+ EIPI+++FRALGF AD DILEHI YDF D ++ME+++PSL
Sbjct: 248 TSKKSVIGQKIVAAIPYVNQEIPIMVVFRALGFVADRDILEHIIYDFDDPELMEMVKPSL 307
Query: 283 EEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYF 338
+EAF IQ Q YIG RG+ GVT+EK IKYA+EILQKEMLPHVG D+CETKKAY+
Sbjct: 308 DEAFVIQEQNVALNYIGSRGSRSGVTKEKRIKYAREILQKEMLPHVGISDYCETKKAYFL 367
Query: 339 GHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN 398
G+++HRLLL ALGRR DDRDHYGNKR LFR L +V+ Y QK VDN
Sbjct: 368 GYMVHRLLLTALGRREVDDRDHYGNKR--------------LFRNLLKEVKMYAQKFVDN 413
Query: 399 GKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW 457
G+D NL+ AIK K IT GL+YSLATGNWG Q A +RAGVSQVLN LT+ ST ++
Sbjct: 414 GRDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQSRAGVSQVLNRLTFVSTLSHLRRL 473
Query: 458 --------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFL 509
KLA+PRQLHN+ WGM+CPAETPEGQA GLVKNLALM YI++GS PILEFL
Sbjct: 474 NSPIGRDGKLARPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSQPSPILEFL 533
Query: 510 EEWGTENFE 518
EEW EN E
Sbjct: 534 EEWSMENLE 542
>gi|395334467|gb|EJF66843.1| DNA-dependent RNA polymerase II second largest subunit [Dichomitus
squalens LYAD-421 SS1]
Length = 1222
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 304/554 (54%), Positives = 389/554 (70%), Gaps = 48/554 (8%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
EDE EE TQE+ W VI+++F++KGLVRQQLDSFDEF QNTMQE+VDE++D+ + QH
Sbjct: 23 EDEYEEITQEDCWTVITSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHT 82
Query: 70 PGQQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVI 121
G D F +IYLS+P +TE+DG +F + ARLRNLTYSAPLY+++ KR++
Sbjct: 83 -GHDGDVTRRYEIKFGQIYLSRPTVTEADGAVVPVFPQEARLRNLTYSAPLYIEMKKRIL 141
Query: 122 KKGHDGE------------------------EVPIMLRSSYCTLYQNSQKALTELGECPY 157
D E +VPIMLRS+YC L++ K L +L ECPY
Sbjct: 142 IGREDQEGSGDMVWEVQRDDDPEDTRKVWIGKVPIMLRSTYCILHELGDKELFDLNECPY 201
Query: 158 DEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVP 217
D GGYFIINGSEKVLIAQE+M+TNHVYVF K QP+ +++AE+ S E + S V
Sbjct: 202 DSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVK 261
Query: 218 MLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMEL 277
+ R+ + S G + AT+PYI+ +IPI ++FRALG +D DILEHICYD QD QM+E+
Sbjct: 262 LYHRSQER--SLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDNQMLEM 319
Query: 278 LRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETK 333
L+P ++E F IQ+++ YIG RG T G+ RE+ ++YA+EILQKEMLPHV + E+K
Sbjct: 320 LKPCIDEGFVIQDREIALDYIGNRGTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESK 379
Query: 334 KAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQ 393
KAY+FG++IHRLLL AL RR DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y+Q
Sbjct: 380 KAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQ 439
Query: 394 KCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFT 452
KCV+ K+ N+ A+K TIT GLKYSLATGNWG Q + ++AGVSQVLN TYAST +
Sbjct: 440 KCVETHKEFNISLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLS 499
Query: 453 YYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYP 504
+ K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM I++G+ + P
Sbjct: 500 HLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGTLSAP 559
Query: 505 ILEFLEEWGTENFE 518
++EFLEEWG E+ E
Sbjct: 560 VIEFLEEWGLESLE 573
>gi|298705314|emb|CBJ49004.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1277
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 304/558 (54%), Positives = 385/558 (68%), Gaps = 42/558 (7%)
Query: 2 MMEEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIE 61
+M++E + EE+ +QE+AW VISAYF EKGLVRQQLDSFDEF Q+TM E+V + +I+
Sbjct: 89 LMDDEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIK 148
Query: 62 IRPESQHNPGQ-------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYV 114
I PE Q+ PGQ Q +F ++YL+KP E DG ++F ARLRNLTY++PLY
Sbjct: 149 ITPELQYMPGQDTVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYC 208
Query: 115 DVTKRVIKKGHDGEE----------------------VPIMLRSSYCTLYQNSQKALTEL 152
D++ + + VPIMLRSS+C L + K LTEL
Sbjct: 209 DISCKTYEADVGDRSQEDGEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTEL 268
Query: 153 GECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPS 212
GEC YD+GGYF+INGSEKVLIA E+MSTNHVY FKKRQP+K+ + +E+ S ++ RPPS
Sbjct: 269 GECIYDQGGYFVINGSEKVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPS 328
Query: 213 TIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDT 272
++F+ M ++ + +G +I A LPYIRT++P++++FRALG+T D+ ILEHI YDF DT
Sbjct: 329 SMFLQMYAKGTQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDT 388
Query: 273 QMMELLRPSLEEAFFIQN----QQYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGD 328
MME RPSLEEA IQN Q +IGKRG+ V V R + I YAK +LQ+E LPHVG G
Sbjct: 389 DMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGA 448
Query: 329 FCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDV 388
E KK ++ G+++H+LL+C+LGR EDDRDHYG KRLDLAG LL GLFR LFRKLT +V
Sbjct: 449 GTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGKKRLDLAGALLAGLFRQLFRKLTQNV 508
Query: 389 RSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYA 448
R Y+Q C+D G + AIK++ IT GLKYSLATGNWG A T+AGVSQVLN LTYA
Sbjct: 509 RKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTA-TKAGVSQVLNRLTYA 567
Query: 449 STFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGS 500
S ++ K AKPRQLHN+ WG +CPAETPEGQA GLVKNLALM YI++G
Sbjct: 568 SALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGC 627
Query: 501 AAYPILEFLEEWGTENFE 518
+ PILEFLEEW EN +
Sbjct: 628 SLSPILEFLEEWAMENLD 645
>gi|344323318|gb|AEN14442.1| DNA-dependent RNA polymerase II second largest subunit [Lentinula
edodes]
Length = 1228
Score = 612 bits (1579), Expect = e-172, Method: Compositional matrix adjust.
Identities = 308/562 (54%), Positives = 396/562 (70%), Gaps = 51/562 (9%)
Query: 3 MEEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI 62
M++E E+D+ E TQE+ W VIS++FE+KGLVRQQLDSFDEF QNTMQE+VDE+AD+ +
Sbjct: 21 MDDE--EDDQYSEITQEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENADLIL 78
Query: 63 RPESQHNPGQQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYV 114
+ QH+ G++ D F +IYLS+P +TE+DG +F + ARLRNLTYSAPLY+
Sbjct: 79 DQQDQHS-GREGDMTRRYEIRFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYI 137
Query: 115 DVTKRVI----------------KKGHDGEE---------VPIMLRSSYCTLYQNSQKAL 149
++ K+V+ + DG E VPIMLRS++C L + + L
Sbjct: 138 EMKKKVMVGREDPDGVPGDMAWETENDDGPENSTKVWIGKVPIMLRSTFCILRGLADQDL 197
Query: 150 TELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNR 209
+L ECPYD GGYFIINGSEKVLIAQE+M+TNHVYVF K QP+ ++AE+ S E +
Sbjct: 198 YDLNECPYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGK 257
Query: 210 PPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDF 269
S V M R + + G + AT+PYI+ +IPI ++FR LG +D DILEHICYD
Sbjct: 258 TISQFQVKMFHRGQER--AMGNVMKATIPYIKVDIPIWVVFRGLGVISDRDILEHICYDM 315
Query: 270 QDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVG 325
QD QM+E+L+P ++E F IQ+++ +IG RG T G++REK I+YA+EILQKEMLPHV
Sbjct: 316 QDAQMLEMLKPCIDEGFVIQDREVALDFIGNRGTTTGLSREKRIRYAQEILQKEMLPHVS 375
Query: 326 TGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLT 385
+ E+KKA++FG++IHRLLL AL RR DDRDH+G KRLDLAGPLL LFR LFRKLT
Sbjct: 376 MAEGSESKKAFFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLT 435
Query: 386 GDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNC 444
DV Y+QKCV+ K+ NL A+K +TIT GLKYSLATGNWG Q + ++AGVSQVLN
Sbjct: 436 KDVYRYMQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNR 495
Query: 445 LTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 496
TYAST ++ K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM I
Sbjct: 496 YTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCI 555
Query: 497 TIGSAAYPILEFLEEWGTENFE 518
++GS + P++EFLEEWG E+ E
Sbjct: 556 SVGSYSAPVIEFLEEWGLESLE 577
>gi|70906409|gb|AAZ14928.1| DNA-dependent RNA polymerase II second largest subunit [Coprinellus
disseminatus]
Length = 1241
Score = 612 bits (1579), Expect = e-172, Method: Compositional matrix adjust.
Identities = 306/553 (55%), Positives = 387/553 (69%), Gaps = 48/553 (8%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNP 70
D+ E TQE+ W VI+++F++KGLVRQQLDSFDEF QNTMQE+VDE+AD+ + QH
Sbjct: 42 DDFAEITQEDCWTVITSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHT- 100
Query: 71 GQQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
G +D F +IYLS+P +TE+DG LF + ARLRNLTYS+PLYV++ KRV+
Sbjct: 101 GHDTDMTRRYEIKFGQIYLSRPTVTEADGSVFPLFPQEARLRNLTYSSPLYVEMKKRVLI 160
Query: 123 KGHDGE------------------------EVPIMLRSSYCTLYQNSQKALTELGECPYD 158
D + +VPIMLRSS+C L+Q L +L ECPYD
Sbjct: 161 GREDPDGVPGDIQWETEQEDTGEPEKIWIGKVPIMLRSSFCILHQLRDNELYDLNECPYD 220
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GGYFIINGSEKVLIAQE+M+TNHVYVF K QP+ ++AE+ S E + S V M
Sbjct: 221 SGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKM 280
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
R + S G + AT+PYI+ +IPI ++FRALG +D DILEHICYD QD QM+E+L
Sbjct: 281 FHRNQER--SMGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEML 338
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
+P +++ F IQ+++ +IG RG T G++RE+ I+YA+EILQKEMLPH+ + E+KK
Sbjct: 339 KPCIDDGFVIQDREVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHISMAEGSESKK 398
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
AY+FG++IHRLLL AL RR DDRDH+G KRLDLAGPLL GLFR LFRKLT DV Y+QK
Sbjct: 399 AYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLAGLFRMLFRKLTKDVYRYLQK 458
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTY 453
CV+ K+ NL A+K +TIT GLKYSLATGNWG Q ++AGVSQVLN TYAST ++
Sbjct: 459 CVETHKEFNLTLAVKQQTITNGLKYSLATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSH 518
Query: 454 YLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM I++GS + P+
Sbjct: 519 LRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPV 578
Query: 506 LEFLEEWGTENFE 518
+EFLEEWG E+ E
Sbjct: 579 IEFLEEWGLESLE 591
>gi|409083783|gb|EKM84140.1| hypothetical protein AGABI1DRAFT_117576 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1220
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 306/555 (55%), Positives = 390/555 (70%), Gaps = 48/555 (8%)
Query: 9 EEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH 68
+ED EE TQE+ W VIS++FE+KGLVRQQLDSFDEF QNTMQE+VDE++D+ + QH
Sbjct: 19 DEDSYEEITQEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQH 78
Query: 69 NPGQQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV 120
G ++D F +IYLS+P +TE+DG +F + ARLRNLTYSAPLY+++ KRV
Sbjct: 79 T-GHETDMTRRYEIKFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIEMRKRV 137
Query: 121 I-----------------KKGHDGE-------EVPIMLRSSYCTLYQNSQKALTELGECP 156
+ K+ H + +VPIMLRS++C L + L +L ECP
Sbjct: 138 LVGREDPDTPGEIAWEAEKEDHPDDATKVWIGKVPIMLRSTFCILRGLQDQDLYDLNECP 197
Query: 157 YDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV 216
YD GGYFIINGSEKVLIAQE+M+TNHVYVF K QP+ ++AE+ S E + S V
Sbjct: 198 YDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQV 257
Query: 217 PMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMME 276
M R + S G + AT+PYI+ +IPI ++FR LG +D DILEHICYD QD QM+E
Sbjct: 258 KMFHRNQER--SLGNVMKATIPYIKVDIPIWVVFRGLGVISDRDILEHICYDMQDAQMLE 315
Query: 277 LLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET 332
+L+P +++ F IQ+++ +IG RG T G++RE+ I+YA+EILQKEMLPHV + E+
Sbjct: 316 MLKPCIDDGFVIQDREVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSES 375
Query: 333 KKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYV 392
KKAY+FG++IHRLLL AL RR DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y+
Sbjct: 376 KKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYL 435
Query: 393 QKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTF 451
QKCV+ K+ NL A+K +TIT GLKYSLATGNWG Q + ++AGVSQVLN TYAST
Sbjct: 436 QKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTL 495
Query: 452 TYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAY 503
++ K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM I++GS +
Sbjct: 496 SHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSA 555
Query: 504 PILEFLEEWGTENFE 518
P++EFLEEWG E+ E
Sbjct: 556 PVIEFLEEWGLESLE 570
>gi|426201159|gb|EKV51082.1| hypothetical protein AGABI2DRAFT_113824 [Agaricus bisporus var.
bisporus H97]
Length = 1183
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 306/555 (55%), Positives = 390/555 (70%), Gaps = 48/555 (8%)
Query: 9 EEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH 68
+ED EE TQE+ W VIS++FE+KGLVRQQLDSFDEF QNTMQE+VDE++D+ + QH
Sbjct: 25 DEDSYEEITQEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQH 84
Query: 69 NPGQQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV 120
G ++D F +IYLS+P +TE+DG +F + ARLRNLTYSAPLY+++ KRV
Sbjct: 85 T-GHETDMTRRYEIKFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIEMRKRV 143
Query: 121 I-----------------KKGHDGE-------EVPIMLRSSYCTLYQNSQKALTELGECP 156
+ K+ H + +VPIMLRS++C L + L +L ECP
Sbjct: 144 LVGREDPDTAGEIAWEAEKEDHPDDATKVWIGKVPIMLRSTFCILRGLQDQDLYDLNECP 203
Query: 157 YDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV 216
YD GGYFIINGSEKVLIAQE+M+TNHVYVF K QP+ ++AE+ S E + S V
Sbjct: 204 YDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQV 263
Query: 217 PMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMME 276
M R + S G + AT+PYI+ +IPI ++FR LG +D DILEHICYD QD QM+E
Sbjct: 264 KMFHRNQER--SLGNVMKATIPYIKVDIPIWVVFRGLGVISDRDILEHICYDMQDAQMLE 321
Query: 277 LLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET 332
+L+P +++ F IQ+++ +IG RG T G++RE+ I+YA+EILQKEMLPHV + E+
Sbjct: 322 MLKPCIDDGFVIQDREVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSES 381
Query: 333 KKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYV 392
KKAY+FG++IHRLLL AL RR DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y+
Sbjct: 382 KKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYL 441
Query: 393 QKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTF 451
QKCV+ K+ NL A+K +TIT GLKYSLATGNWG Q + ++AGVSQVLN TYAST
Sbjct: 442 QKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTL 501
Query: 452 TYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAY 503
++ K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM I++GS +
Sbjct: 502 SHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSA 561
Query: 504 PILEFLEEWGTENFE 518
P++EFLEEWG E+ E
Sbjct: 562 PVIEFLEEWGLESLE 576
>gi|390604597|gb|EIN13988.1| DNA-dependent RNA polymerase II second largest subunit [Punctularia
strigosozonata HHB-11173 SS5]
Length = 1247
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 302/556 (54%), Positives = 390/556 (70%), Gaps = 49/556 (8%)
Query: 9 EEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH 68
E+ +EEE TQE+ W VIS++F++KGLVRQQLDSFDEF QNTMQE+VDE++D+ + QH
Sbjct: 25 EDADEEEITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQH 84
Query: 69 NPGQQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV 120
G +D F +IYLS+P +TE+DG +F + ARLRNLTY+APLY+++ KR
Sbjct: 85 T-GSATDMTRRYEIKFGQIYLSRPTVTEADGSVMPVFPQEARLRNLTYNAPLYIEMRKRT 143
Query: 121 IKKGHDGE-------------------------EVPIMLRSSYCTLYQNSQKALTELGEC 155
+ D E +VPIMLRS++C L+ + L +L EC
Sbjct: 144 LIGREDPEGAPGDVIWQEEPGDAAEDSRKVWIGKVPIMLRSTFCILHDIPENDLFDLNEC 203
Query: 156 PYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIF 215
PYD GGYFIINGSEKVLIAQE+M+TNHVYVF K QP+ +++AE+ S E + S
Sbjct: 204 PYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQ 263
Query: 216 VPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMM 275
V M +R + S G I AT+PYI+ +IPI ++FRALG +D DILEHICYD QD QM+
Sbjct: 264 VKMYTRNQER--SLGNLIKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQML 321
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
E+L+P +++ F IQ+++ +IG RG T G+++E+ ++YA+EILQKEMLPHV + E
Sbjct: 322 EMLKPCIQDGFAIQDREIALDFIGNRGTTTGLSKERRLRYAQEILQKEMLPHVSMAEGSE 381
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
+KKAY+FG++IHRLLL AL RR DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y
Sbjct: 382 SKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRY 441
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAST 450
+QKC++ GK NL A+K TIT GLKYSLATGNWG Q + ++AGVSQVLN TYAST
Sbjct: 442 LQKCIETGKQFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYAST 501
Query: 451 FTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAA 502
++ K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM I++GS +
Sbjct: 502 LSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATISVGSIS 561
Query: 503 YPILEFLEEWGTENFE 518
P++EFLEEWG E+ E
Sbjct: 562 APVIEFLEEWGLESLE 577
>gi|213408763|ref|XP_002175152.1| DNA-directed RNA polymerase II complex subunit Rpb2
[Schizosaccharomyces japonicus yFS275]
gi|212003199|gb|EEB08859.1| DNA-directed RNA polymerase II complex subunit Rpb2
[Schizosaccharomyces japonicus yFS275]
Length = 1210
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 301/547 (55%), Positives = 388/547 (70%), Gaps = 45/547 (8%)
Query: 14 EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ- 72
E TQE+ W VIS+YFEE L RQQL SFDEF QNTMQEIVD+ + + + +QH Q
Sbjct: 10 ETLTQEDCWTVISSYFEENSLARQQLSSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQG 69
Query: 73 ------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHD 126
+ +F +IYLS+P MTE+DG T T+F + ARLRNLTYS+PLYVD+ K+V++
Sbjct: 70 DYTRRYEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMRAQDS 129
Query: 127 ----GEEV------------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFI 164
GEE+ PIMLRS++C L S L +L ECPYD+GGYFI
Sbjct: 130 NVPIGEEIWLTEEEDDEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFI 189
Query: 165 INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSA 224
INGSEKV+IAQE+ + N V VF+K P+ AYVAE+ S E +R S++ + +++R++
Sbjct: 190 INGSEKVIIAQERSAANIVQVFRKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARSTE 249
Query: 225 KGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEE 284
+SGQ I ATLPYIR++IPI+++FRALG D DILEHICYD D QM+E+++P +EE
Sbjct: 250 ---NSGQTIKATLPYIRSDIPIVVVFRALGVVPDRDILEHICYDPNDLQMLEMMKPCIEE 306
Query: 285 AFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGH 340
AF IQ++ YIGKRG+T GVTREK ++YA +ILQKEMLPH+ T + ET+KA++ G+
Sbjct: 307 AFVIQDKDVALDYIGKRGSTTGVTREKRLRYAHDILQKEMLPHITTLEGFETRKAFFLGY 366
Query: 341 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK 400
++HR+LLCAL RR DDRDH+G KRLDLAGPLL LFR LF+K+T DV Y+QKCV+ +
Sbjct: 367 MVHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFKKMTRDVYKYMQKCVETNR 426
Query: 401 DVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY----- 454
+ NL A+K+ TIT GL+YSLATGNWG Q R GVSQVLN T+AST ++
Sbjct: 427 EFNLTLAVKSNTITNGLRYSLATGNWGDQKRGLANRVGVSQVLNRYTFASTLSHLRRTNT 486
Query: 455 ---LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEE 511
KLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM Y+++GS + PI+EFLEE
Sbjct: 487 PIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEE 546
Query: 512 WGTENFE 518
WG E+ E
Sbjct: 547 WGMESLE 553
>gi|392597726|gb|EIW87048.1| DNA-dependent RNA polymerase II second largest subunit [Coniophora
puteana RWD-64-598 SS2]
Length = 1228
Score = 609 bits (1571), Expect = e-171, Method: Compositional matrix adjust.
Identities = 300/548 (54%), Positives = 388/548 (70%), Gaps = 49/548 (8%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD- 75
TQE+ W VIS++F++KGLVRQQLDSFDEF QNTMQE+VDE+AD+ + QH G ++D
Sbjct: 30 TQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHT-GHETDM 88
Query: 76 -------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE 128
F +IYLS+P +TE+DG +F + ARLRNLTYSAPLY+D+ KRV+ D +
Sbjct: 89 TRRYEIHFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIDMKKRVLTGREDPD 148
Query: 129 -------------------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
+VPIMLRS++C L + + L +L ECPYD GGYF
Sbjct: 149 MPGEVTWIPEDPDSENQEGTKVWIGKVPIMLRSTFCILRELQDQDLYDLNECPYDSGGYF 208
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS 223
IINGSEKVLIAQE+M+TNHVYVF K QP+ +++AE+ S E + S V M R+
Sbjct: 209 IINGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKMFHRSQ 268
Query: 224 AKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLE 283
+ S G + AT+PYI+ +IPI ++FRALG +D DILEHICYD QD+QM+E+L+P ++
Sbjct: 269 ER--SLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDSQMLEMLKPCID 326
Query: 284 EAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFG 339
+ F IQ+++ +IG RG T G++RE+ I+YA+EILQKEMLPHV + E+KKAY+FG
Sbjct: 327 DGFVIQDREVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMSEGSESKKAYFFG 386
Query: 340 HIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNG 399
++IHRLLL A+ RR DDRDH+G KRLDLAGPLL LFR LF+KLT DV Y+QKCV+
Sbjct: 387 YMIHRLLLAAMERRELDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETH 446
Query: 400 KDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW- 457
K+ N+ A+K +TIT GLKYSLATGNWG Q + ++AGVSQVLN TYAST ++
Sbjct: 447 KEFNISLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCN 506
Query: 458 -------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLE 510
K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM I++GS + P++EFLE
Sbjct: 507 TPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLE 566
Query: 511 EWGTENFE 518
EWG E+ E
Sbjct: 567 EWGLESLE 574
>gi|403417741|emb|CCM04441.1| predicted protein [Fibroporia radiculosa]
Length = 1226
Score = 609 bits (1571), Expect = e-171, Method: Compositional matrix adjust.
Identities = 305/558 (54%), Positives = 391/558 (70%), Gaps = 50/558 (8%)
Query: 8 LEEDEEEET-TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPES 66
L+++EE ET TQE+ W VIS++FE+KGLVRQQLDSFDEF QNTMQE+VDE+AD+ +
Sbjct: 22 LDDEEEYETITQEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQSD 81
Query: 67 QHNPGQQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK 118
QH G D F +IYLS+P +TE+DG A +F + ARLRNLTYSAPLY+++ K
Sbjct: 82 QHT-GHDGDVNRRYEIKFGQIYLSRPTVTEADGSVAPVFPQEARLRNLTYSAPLYIEMKK 140
Query: 119 RVIKKGHDGE-------------------------EVPIMLRSSYCTLYQNSQKALTELG 153
RV+ D + +VPIMLRSS+C L+ + + +L
Sbjct: 141 RVLVGREDPDSLTGDMTWEPEHEENPEDTRKVWIGKVPIMLRSSFCILHGLVDEDVYDLN 200
Query: 154 ECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPST 213
ECP+D GGYFIINGSEKVLIAQE+M+TNHVYVF K QP+ +++AE+ S E + S
Sbjct: 201 ECPFDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVERGGKTISQ 260
Query: 214 IFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQ 273
V + R + S G + AT+PYIR +IPI ++FRALG +D DILEHICYD QD Q
Sbjct: 261 FQVKLFHRNQER--SLGNVMKATIPYIRVDIPIWVVFRALGVISDRDILEHICYDMQDAQ 318
Query: 274 MMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDF 329
M+E+L+P +++ F IQ+++ +IG RG T G+ RE+ ++YA+EILQKEMLPHV +
Sbjct: 319 MLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLNRERRLRYAQEILQKEMLPHVSMAEG 378
Query: 330 CETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVR 389
E+KKAY+FG++IHRLLL A+ RR DDRDH+G KRLDLAGPLL LFR LFRKLT DV
Sbjct: 379 SESKKAYFFGYMIHRLLLAAMERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVY 438
Query: 390 SYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYA 448
Y+QKCV+ K+ NL A+K TIT GLKYSLATGNWG Q + ++AGVSQVLN TYA
Sbjct: 439 RYLQKCVETHKEFNLNLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYA 498
Query: 449 STFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGS 500
ST ++ K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM I++GS
Sbjct: 499 STLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGS 558
Query: 501 AAYPILEFLEEWGTENFE 518
+ P++EFLEEWG E+ E
Sbjct: 559 LSAPVIEFLEEWGLESLE 576
>gi|336376994|gb|EGO05329.1| hypothetical protein SERLA73DRAFT_101102 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390144|gb|EGO31287.1| DNA-directed RNA polymerase II, subunit 2 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1209
Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust.
Identities = 307/549 (55%), Positives = 386/549 (70%), Gaps = 51/549 (9%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD- 75
TQE+ W VIS++FE+KGLVRQQLDSFDEF QNTMQE+VDE+AD+ + QH G +SD
Sbjct: 12 TQEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHT-GHESDM 70
Query: 76 -------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGH--- 125
F +IYLS+P +TE+DG +F + ARLRNLTYSAPLY+++ KRV+ GH
Sbjct: 71 TRRYEIKFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIEMKKRVLI-GHSDP 129
Query: 126 ---------DGE--------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGY 162
D E +VPIMLRS++C L + L +L ECPYD GGY
Sbjct: 130 NGGQGDILWDAEHEESPEDTTKVWIGKVPIMLRSTFCILRGLQDQDLYDLNECPYDSGGY 189
Query: 163 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRT 222
FIINGSEKVLIAQE+M+TNHVYVF K QP+ ++AE+ S E + S V M R
Sbjct: 190 FIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRN 249
Query: 223 SAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSL 282
+ S G + AT+PYI+ +IPI ++FRALG +D DILEHICYD QD QM+E+L+P +
Sbjct: 250 QER--SLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCI 307
Query: 283 EEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYF 338
++ F IQ+++ +IG RG T G++RE+ I+YA+EILQKEMLPHV + E+KKAY+F
Sbjct: 308 DDGFVIQDREVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFF 367
Query: 339 GHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN 398
G++IHRLLL AL RR DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV+
Sbjct: 368 GYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVET 427
Query: 399 GKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW 457
K+ NL A+K +TIT GLKYSLATGNWG Q + ++AGVSQVLN TYAST ++
Sbjct: 428 HKEFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRC 487
Query: 458 --------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFL 509
K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM I++GS + P++EFL
Sbjct: 488 NTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFL 547
Query: 510 EEWGTENFE 518
EEWG E+ E
Sbjct: 548 EEWGLESLE 556
>gi|397576311|gb|EJK50184.1| hypothetical protein THAOC_30880 [Thalassiosira oceanica]
Length = 1299
Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust.
Identities = 306/581 (52%), Positives = 380/581 (65%), Gaps = 80/581 (13%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
TQE+AWAVISAYFEEKGLVRQQLDSFDEF QNTMQE+VD+S I + PE QH G D
Sbjct: 50 VTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGSIRVSPEIQHTVGYDED 109
Query: 76 -----------------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK 118
F ++YLSKP E DG +F ARLRNLTY+APLYVDVT
Sbjct: 110 GFDEAMSSSTKKVFEVKFGQVYLSKPTTVEKDGTVTNMFPHEARLRNLTYAAPLYVDVTM 169
Query: 119 RVIKKGHD----------GEEV-------------PIMLRSSYCTLYQNSQKALTELGEC 155
+ D GE V PIMLRS +C L L +LGEC
Sbjct: 170 NEYRVPSDANVADPAEEMGEPVSTEEARKEFLGYVPIMLRSLFCVLSDKDDAQLADLGEC 229
Query: 156 PYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIF 215
YD+GGYF++NGSEKV++AQE+MS NHVY F+K+QP+K+++V E S E+ RP ST++
Sbjct: 230 IYDQGGYFVVNGSEKVIVAQERMSNNHVYAFRKKQPSKFSWVIETRSQVENSTRPTSTLY 289
Query: 216 VPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMM 275
+ M + KG G I +TLPYIRT+IP++I+FRALG+ AD DI+EH+ YD D +MM
Sbjct: 290 IQMYQK-GGKGAIEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDGEMM 348
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
+L RPSLEE+F IQ Q+ +IG+RG+ VT++ I+YA ILQ+E+LPHVGT + CE
Sbjct: 349 DLFRPSLEESFVIQKQEVALDFIGRRGSARDVTKDDRIRYAAGILQREVLPHVGTEEHCE 408
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
TKK ++ G+ +H+LL+C LGR EDDRDH+G KRLDLAGPLLGGLFR LFRKLT DVR +
Sbjct: 409 TKKGFFLGYAVHKLLMCRLGRVDEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLTKDVRRH 468
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNW------------------------- 426
+Q+C+D GK N+ AIK+ IT GLKYSLATGN
Sbjct: 469 LQRCLDEGKHFNIGAAIKSNHITDGLKYSLATGNCESYRKNDCIFVFSCKPNNLMRHLGR 528
Query: 427 --GQGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLHNSQWGMMCPA 476
G A T+AGVSQVLN LTYAS+ ++ + K AKPRQLHNS WGM+CP
Sbjct: 529 LEGGDKGATTKAGVSQVLNRLTYASSLSHLRRSNTPLARTGKQAKPRQLHNSHWGMVCPC 588
Query: 477 ETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
ETPEGQA GLVKN+ALM YIT G++ P++EFLEE+ TEN
Sbjct: 589 ETPEGQAVGLVKNMALMAYITTGTSQVPVMEFLEEFSTENL 629
>gi|392571043|gb|EIW64215.1| DNA-dependent RNA polymerase II second largest subunit [Trametes
versicolor FP-101664 SS1]
Length = 1231
Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust.
Identities = 304/551 (55%), Positives = 385/551 (69%), Gaps = 49/551 (8%)
Query: 14 EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQ 73
EE TQE+ W VIS++F++KGLVRQQLDSFDEF QNTMQE+VDE+AD+ + QH G +
Sbjct: 29 EEITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHT-GHE 87
Query: 74 SD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVI---- 121
SD F +IYLS+P +TE+DG +F + ARLRNLTYSAPLY+++ KRV+
Sbjct: 88 SDVTRRYEIKFGQIYLSRPTVTEADGSVVPIFPQEARLRNLTYSAPLYIEMKKRVLLGRE 147
Query: 122 -----------KKGHDGE----------EVPIMLRSSYCTLYQNSQKALTELGECPYDEG 160
+ HD +VPIMLRS++C L+ L +L ECPYD G
Sbjct: 148 DPDSATGDMVWETEHDDNPEDTRKVWIGKVPIMLRSTFCILHGLEDDELYDLNECPYDSG 207
Query: 161 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLS 220
GYFIINGSEKVLIAQE+M+TNHVYVF K QP+ +++AE+ S E + S V +
Sbjct: 208 GYFIINGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYH 267
Query: 221 RTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRP 280
R+ + S G + AT+PYI+ +IPI ++FRALG +D DILEHICYD QD QM+E+L+P
Sbjct: 268 RSQER--SLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDNQMLEMLKP 325
Query: 281 SLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAY 336
++E F IQ+++ YIG RG T G+ RE+ ++YA+EILQKEMLPHV + E+KKAY
Sbjct: 326 CIDEGFVIQDREIALDYIGNRGTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAY 385
Query: 337 YFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
+FG++IHRLLL AL RR DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV
Sbjct: 386 FFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCV 445
Query: 397 DNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL 455
+ K+ L A+K TIT GLKYSLATGNWG Q ++AGVSQVLN TYAST ++
Sbjct: 446 ETHKEFQLGLAVKHNTITNGLKYSLATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSHLR 505
Query: 456 SW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILE 507
K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM I++GS + P++E
Sbjct: 506 RCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIE 565
Query: 508 FLEEWGTENFE 518
FLEEWG E+ E
Sbjct: 566 FLEEWGLESLE 576
>gi|312079478|ref|XP_003142191.1| DNA-directed RNA polymerase II second largest subunit [Loa loa]
gi|307762647|gb|EFO21881.1| DNA-directed RNA polymerase II subunit RPB2 [Loa loa]
Length = 1171
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 313/536 (58%), Positives = 372/536 (69%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E QE W VISAYF+EKGLVRQQLDSFDEF Q +Q IV++S +E++ E QH G
Sbjct: 22 EQWQEACWVVISAYFDEKGLVRQQLDSFDEFIQMNVQRIVEDSPPVELQSEVQHFSGDVE 81
Query: 75 D-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
+ F +IYLSKP E DG + ARLRNLTYS+PLY+D+TK + + G +
Sbjct: 82 NPIKFALKFDQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSSPLYIDITKTMTRIGEEP 141
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
+E +PIMLRSSYC L S + L+EL ECP D GGYF+INGSEKVLIAQEK
Sbjct: 142 KETKYEKVFVGKIPIMLRSSYCMLANMSDRDLSELNECPLDPGGYFVINGSEKVLIAQEK 201
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS--AKGGSSGQYIHA 235
M+TN VYVF + KY Y E S E+ +RP ST++V ML R +K + G I A
Sbjct: 202 MATNTVYVFSMKD-GKYTYKTECRSCLENSSRPTSTLWVNMLPRGGGGSKKSAMGPKIIA 260
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPYI+ EIP++I+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF IQ Q
Sbjct: 261 ILPYIKQEIPVMIVFRALGFVSDHDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVAL 320
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVT+E+ IKYAKEILQKEMLPHVG DFCETKKAY+ G+++HRLLL ALG
Sbjct: 321 NFIGARGAKPGVTKEQRIKYAKEILQKEMLPHVGISDFCETKKAYFLGYMVHRLLLAALG 380
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDH GNKRLDLAGPLL LFR LFR L +VR QK ++ D L +K
Sbjct: 381 RRELDDRDHMGNKRLDLAGPLLAFLFRALFRNLLKEVRLTAQKYINKNGDFMLDLCVKTP 440
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKP 462
IT GL YSLATGNWG Q A +RAGVSQVLN LTY +T ++ KLAKP
Sbjct: 441 LITRGLAYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRCNSPIGREGKLAKP 500
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+QWGM+CPAETPEGQA GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 501 RQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLE 556
>gi|169844839|ref|XP_001829140.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
cinerea okayama7#130]
gi|116509880|gb|EAU92775.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
cinerea okayama7#130]
Length = 1222
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 302/547 (55%), Positives = 386/547 (70%), Gaps = 48/547 (8%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD- 75
TQE+ W VIS++F++KGLVRQQLDSFDEF QNTMQE+VDE++D+ + QH GQ D
Sbjct: 30 TQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHT-GQAGDM 88
Query: 76 -------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVI------- 121
F +IYLS+P +TE+DG +F + ARLRNLTYSAPLY+++ KRV+
Sbjct: 89 TRRYEIKFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIEMRKRVLVGREDPA 148
Query: 122 ----------KKGHDGE-------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFI 164
+ DG+ +VPIMLRSS+C L++ + L +L ECPYD GGYFI
Sbjct: 149 VPGDITWEAEHEDTDGDAAKIWIGKVPIMLRSSFCILHELRDQDLYDLNECPYDSGGYFI 208
Query: 165 INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSA 224
INGSEKVLIAQE+M+TNHVYVF K QP+ ++AE+ S E + S V M R
Sbjct: 209 INGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVERGGKTISQFQVKMFHRNQE 268
Query: 225 KGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEE 284
+ S G + AT+PYI+ +IPI ++FRALG +D DILEHICYD QD QM+E+L+P +++
Sbjct: 269 R--SLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDD 326
Query: 285 AFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGH 340
F IQ+++ +IG RG T G+ R++ I+YA+EILQKEMLPH+ + E+KKAY+FG+
Sbjct: 327 GFVIQDREVALDFIGNRGTTTGLPRDRRIRYAQEILQKEMLPHISMAEGSESKKAYFFGY 386
Query: 341 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK 400
+IHRLLL AL RR DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV+ K
Sbjct: 387 MIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHK 446
Query: 401 DVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW-- 457
+ NL A+K +TIT GLKYSLATGNWG Q + ++AGVSQVLN TYAST ++
Sbjct: 447 EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 506
Query: 458 ------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEE 511
K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM I++GS + P++EFLEE
Sbjct: 507 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 566
Query: 512 WGTENFE 518
WG E+ E
Sbjct: 567 WGLESLE 573
>gi|320166143|gb|EFW43042.1| DNA-directed RNA polymerase II subunit RPB2 [Capsaspora owczarzaki
ATCC 30864]
Length = 1729
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 302/544 (55%), Positives = 379/544 (69%), Gaps = 35/544 (6%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH- 68
E+ EE TQE+ W VI ++F+ KGLVRQQLDSFD+F T+ E++ E +E++ E Q
Sbjct: 27 EEYEEVITQEDTWVVIRSFFKNKGLVRQQLDSFDDFISLTIPELISEQGTLELKVERQFL 86
Query: 69 ------NPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
P F I++S P +TESDG LF ARLRNLTY+ LYV++ + + +
Sbjct: 87 DADEVAPPRYVVSFDNIFISHPTITESDGYNHALFPNEARLRNLTYACRLYVNLKREMFR 146
Query: 123 KGHDGEE---------------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIING 167
+G E +P+MLRS C L+ L ++ ECPYD+GGYF+ING
Sbjct: 147 YDENGVEEPPEVKILDKVYLGQIPMMLRSKNCALFNKKDYELEKMNECPYDQGGYFVING 206
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+M+ N+VYVF ++ P KY+YVAE+ S E+ +RP +T++ ML+R +KG
Sbjct: 207 SEKVLIAQERMANNNVYVFHRKPPAKYSYVAEIRSALETGHRPANTLYTKMLTRGQSKGE 266
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
S+G I TLPYI+T+IPI+++FRALGF +D D+L+H+ YD+QD +MME+LR SLEEA
Sbjct: 267 SAGNRIQCTLPYIKTDIPIVVVFRALGFVSDRDVLDHVIYDYQDQEMMEMLRFSLEEALP 326
Query: 288 IQNQ----QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ Q +IGKRG G TRE I+YAKEILQKE+LPHVG D ETKKAY+FG+I+H
Sbjct: 327 IQEQPVALDFIGKRGLVQGATRENRIRYAKEILQKELLPHVGVTDHSETKKAYFFGYIVH 386
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLL ALGRR DDRDHYGNKR DLAG L+GGLFR LFRKL DV++ +QK VD + N
Sbjct: 387 RLLQAALGRRELDDRDHYGNKRCDLAGALVGGLFRLLFRKLIKDVKASLQKDVDKRHEFN 446
Query: 404 LQFAIKAKTITGGLKYSLATGNWGQGNAAG-TRAGVSQVLNCLTYASTFTYYLSW----- 457
L A KAK I+ GL+YSLATGNWG A +RAGVSQVLN LTYAST ++
Sbjct: 447 LLAAFKAKIISDGLRYSLATGNWGDAKKAHESRAGVSQVLNRLTYASTLSHLRRLNSPIG 506
Query: 458 ---KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
KLAKPRQL N+QWG+MCPAETPEGQACGLVKNLALM YI++GS A I+EFLEEW T
Sbjct: 507 REGKLAKPRQLQNTQWGVMCPAETPEGQACGLVKNLALMAYISVGSPALHIIEFLEEWAT 566
Query: 515 ENFE 518
EN E
Sbjct: 567 ENLE 570
>gi|409193805|gb|AFV31136.1| RPB2 [Amoeboaphelidium protococcarum]
Length = 1174
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 313/551 (56%), Positives = 387/551 (70%), Gaps = 50/551 (9%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
+ TQE W VIS++FEEKGLVRQQLDSFD F QNTMQE+VDE + + ++ SQ + GQ+
Sbjct: 2 DITQENCWQVISSFFEEKGLVRQQLDSFDSFIQNTMQELVDEHSQLVLQSNSQFS-GQEG 60
Query: 75 D--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV------ 120
D F ++YLSKP+ TE DG + L ARLRNLTY+APLY+D+ K
Sbjct: 61 DVTRRHVIQFGQVYLSKPLHTEKDGMSTPLLPSMARLRNLTYAAPLYIDIKKTTYVADPN 120
Query: 121 ---------IKKGHDGEE------------VPIMLRSSYCTLYQNSQKALTELGECPYDE 159
+ + H +E VP+M++SSYC L +S L +GECPYD+
Sbjct: 121 HELNQGIVNVNEMHLEQEDEVMYERIFLGKVPLMVKSSYCALSSSSNHELMGMGECPYDQ 180
Query: 160 GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPML 219
GGYFIINGSEKVLIAQE+M+ N VYVF K P+ Y+Y AE+ S E + S +FV ML
Sbjct: 181 GGYFIINGSEKVLIAQERMANNQVYVFAKSPPSPYSYTAEIRSAVERGGKNASAVFVKML 240
Query: 220 SRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
SR + KG +SGQYI +PYI+ +IPI I+FRALG AD+DIL HI YD +DTQM++LL+
Sbjct: 241 SRLADKG-TSGQYIRCQIPYIKQDIPIGIVFRALGVVADKDILSHIVYDPEDTQMLDLLK 299
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
P +EEAF IQ+Q +IGKRG TVGV RE+ IKYA+EILQKE LPHVG + E+KKA
Sbjct: 300 PCIEEAFTIQDQNVALDFIGKRGTTVGVRREQRIKYAREILQKEFLPHVGVEEHSESKKA 359
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
++FG++I+RLL CAL RR DDRDH+ KRLDLAGPLLGGLFR LFRKLT DV Y+QKC
Sbjct: 360 FFFGYMINRLLQCALERRELDDRDHFAKKRLDLAGPLLGGLFRMLFRKLTTDVGKYLQKC 419
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
++ G++ NL A+K + IT GLKYS+ATGNWG Q A TRAGVSQVLN TY ST ++
Sbjct: 420 INEGREFNLPLAVKHQIITSGLKYSIATGNWGDQSKAMSTRAGVSQVLNRYTYISTLSHL 479
Query: 455 LSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHNSQ+GM+CPAE+PEGQACGLVKNLALM Y+++GS P+L
Sbjct: 480 RRCNAPIGREGKLAKPRQLHNSQFGMVCPAESPEGQACGLVKNLALMAYVSVGSPTSPVL 539
Query: 507 EFLEEWGTENF 517
EFLEEW EN
Sbjct: 540 EFLEEWAMENL 550
>gi|449550934|gb|EMD41898.1| hypothetical protein CERSUDRAFT_110450 [Ceriporiopsis subvermispora
B]
Length = 1242
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 299/548 (54%), Positives = 383/548 (69%), Gaps = 49/548 (8%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD- 75
TQE+ W VIS++FE+KGLVRQQLDSFDEF QNTMQE+VDE++D+ + QH G ++D
Sbjct: 34 TQEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHT-GHEADV 92
Query: 76 -------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE 128
F +IYLS+P +TE+DG +F + AR RNLTYSAPLY+++ KRV+ D +
Sbjct: 93 TRRYEIKFGQIYLSRPTVTEADGSVVPVFPQEARQRNLTYSAPLYIEIKKRVLIGREDPD 152
Query: 129 -------------------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
+VPIMLRS++C L+ L +L ECPYD GGYF
Sbjct: 153 SATGDILWEPEQRETAEDTTKVWIGKVPIMLRSTFCILHNVQDSELYDLNECPYDSGGYF 212
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS 223
IINGSEKVLIAQE+M+TNHVYVF K QP+ +++AE+ S E + S V + R
Sbjct: 213 IINGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVERGGKTISQFQVKLYHRNQ 272
Query: 224 AKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLE 283
+ S G + AT+PYI+ +IPI ++FRALG +D DILEHICYD QD QM+E+L+P ++
Sbjct: 273 ER--SLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCID 330
Query: 284 EAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFG 339
+ F IQ+++ +IG RG T G+ RE+ ++YA+EILQKEMLPHV + E+KKAY+FG
Sbjct: 331 DGFVIQDREVALDFIGNRGTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFG 390
Query: 340 HIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNG 399
++IHRLLL AL RR DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV++
Sbjct: 391 YMIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVESH 450
Query: 400 KDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW- 457
K+ NL A+K TIT GLKYSLATGNWG Q + ++AGVSQVLN TYAST ++
Sbjct: 451 KEFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCN 510
Query: 458 -------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLE 510
K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM I++GS + P++EFLE
Sbjct: 511 TPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSLSAPVIEFLE 570
Query: 511 EWGTENFE 518
EWG E+ E
Sbjct: 571 EWGLESLE 578
>gi|218554|dbj|BAA02600.1| RNA polymerase II second largest subunit [Schizosaccharomyces
pombe]
Length = 1210
Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust.
Identities = 299/547 (54%), Positives = 383/547 (70%), Gaps = 45/547 (8%)
Query: 14 EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ- 72
E TQE+ W VIS++FEE L RQQL SFDEF QNTMQEIVD+ + + + +QH Q
Sbjct: 10 ETLTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQG 69
Query: 73 ------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHD 126
+ +F +IYLS+P MTE+DG T T+F + ARLRNLTYS+PLYVD+ K+V+
Sbjct: 70 DVTRRYEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADS 129
Query: 127 GE----------------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFI 164
++PIMLRS++C L S L +L ECPYD+GGYFI
Sbjct: 130 NVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFI 189
Query: 165 INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSA 224
INGSEKV+IAQE+ + N V VFKK P+ AYVAE+ S E +R S++ + +++R +
Sbjct: 190 INGSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTE 249
Query: 225 KGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEE 284
+SGQ I ATLPYIR++IPI+I+FRALG D DILEHICYD D QM+E+++P +EE
Sbjct: 250 ---NSGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEE 306
Query: 285 AFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGH 340
AF IQ++ YIGKRG+T GVTREK ++YA +ILQKE+LPH+ T + ET+KA++ G+
Sbjct: 307 AFVIQDKDIALDYIGKRGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGY 366
Query: 341 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK 400
+IHR+LLCAL RR DDRDH+G KRLDLAGPLL LFR LFRK+T DV Y+QKCV+ +
Sbjct: 367 MIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVETNR 426
Query: 401 DVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY----- 454
+ NL A+K+ IT GL+YSLATGNWG Q + R GVSQVLN T+AST ++
Sbjct: 427 EFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNT 486
Query: 455 ---LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEE 511
KLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM Y+++GS + PI+EFLEE
Sbjct: 487 PIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEE 546
Query: 512 WGTENFE 518
WG E E
Sbjct: 547 WGLETLE 553
>gi|63054498|ref|NP_593101.2| RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe
972h-]
gi|19862286|sp|Q02061.2|RPB2_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 138 kDa polypeptide
gi|256599716|pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599728|pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|159883907|emb|CAB86470.2| RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe]
Length = 1210
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 299/547 (54%), Positives = 383/547 (70%), Gaps = 45/547 (8%)
Query: 14 EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ- 72
E TQE+ W VIS++FEE L RQQL SFDEF QNTMQEIVD+ + + + +QH Q
Sbjct: 10 ETLTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQG 69
Query: 73 ------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHD 126
+ +F +IYLS+P MTE+DG T T+F + ARLRNLTYS+PLYVD+ K+V+
Sbjct: 70 DVTRRYEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADS 129
Query: 127 GE----------------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFI 164
++PIMLRS++C L S L +L ECPYD+GGYFI
Sbjct: 130 NVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFI 189
Query: 165 INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSA 224
INGSEKV+IAQE+ + N V VFKK P+ AYVAE+ S E +R S++ + +++R +
Sbjct: 190 INGSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTE 249
Query: 225 KGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEE 284
+SGQ I ATLPYIR++IPI+I+FRALG D DILEHICYD D QM+E+++P +EE
Sbjct: 250 ---NSGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEE 306
Query: 285 AFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGH 340
AF IQ++ YIGKRG+T GVTREK ++YA +ILQKE+LPH+ T + ET+KA++ G+
Sbjct: 307 AFVIQDKDIALDYIGKRGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGY 366
Query: 341 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK 400
+IHR+LLCAL RR DDRDH+G KRLDLAGPLL LFR LFRK+T DV Y+QKCV+ +
Sbjct: 367 MIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVETNR 426
Query: 401 DVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY----- 454
+ NL A+K+ IT GL+YSLATGNWG Q + R GVSQVLN T+AST ++
Sbjct: 427 EFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNT 486
Query: 455 ---LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEE 511
KLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM Y+++GS + PI+EFLEE
Sbjct: 487 PIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEE 546
Query: 512 WGTENFE 518
WG E E
Sbjct: 547 WGLETLE 553
>gi|17552304|ref|NP_498047.1| Protein RPB-2 [Caenorhabditis elegans]
gi|2507348|sp|Q10578.2|RPB2_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2
gi|351058294|emb|CCD65728.1| Protein RPB-2 [Caenorhabditis elegans]
Length = 1193
Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust.
Identities = 313/549 (57%), Positives = 381/549 (69%), Gaps = 34/549 (6%)
Query: 3 MEEERLEEDEE--EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
M+ + +++ +E E QE W VISAYF+EKGLVRQQLDSFDEF Q +Q IV++S +
Sbjct: 13 MDGDYIDDSDEISAEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPV 72
Query: 61 EIRPESQH------NPGQQS-DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
E++ E+QH NP + S F +IYLSKP E DG + ARLRNLTY++PLY
Sbjct: 73 ELQSENQHLGTDMENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLY 132
Query: 114 VDVTKRVIKKGHDGEEV---------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFI 164
VD+TK V + E+V P+MLRSSYC L + + LTEL ECP D GGYF+
Sbjct: 133 VDITKVVTRDDSATEKVYDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFV 192
Query: 165 INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSA 224
INGSEKVLIAQEKM+TN VYVF + KYA+ E S E+ +RP ST++V ML+R
Sbjct: 193 INGSEKVLIAQEKMATNTVYVFSMKD-GKYAFKTECRSCLENSSRPTSTMWVNMLARGGG 251
Query: 225 KGGSS--GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSL 282
G + GQ I LPYI+ EIPI+I+FRALGF +D DIL HI YDF D +MME+++PSL
Sbjct: 252 GGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSL 311
Query: 283 EEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYF 338
+EAF IQ Q +IG RGA GVTRE+ IKYA+EILQKE+LPHVG + CETKKA++
Sbjct: 312 DEAFVIQEQNVALNFIGARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFI 371
Query: 339 GHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN 398
G+++HRLLL ALGRR DDRDH GNKRLDLAGPLL LFR+LFR L ++R QK ++
Sbjct: 372 GYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINK 431
Query: 399 GKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--- 454
D L +K TIT GL YSLATGNWG Q A +RAGVSQVLN LTY +T ++
Sbjct: 432 NDDFALDVCVKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRA 491
Query: 455 -----LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFL 509
KLAKPRQLHN+QWGM+CPAETPEGQA GLVKNLALM YI++GS PILEFL
Sbjct: 492 NSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFL 551
Query: 510 EEWGTENFE 518
EEW EN E
Sbjct: 552 EEWSMENLE 560
>gi|341896020|gb|EGT51955.1| CBN-RPB-2 protein [Caenorhabditis brenneri]
Length = 1195
Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 316/549 (57%), Positives = 380/549 (69%), Gaps = 34/549 (6%)
Query: 3 MEEERLEEDEE--EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
M+ E EE +E E QE W VISAYF+EKGLVRQQLDSFDEF Q +Q IV++S +
Sbjct: 12 MDGEYEEETDEISAEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPV 71
Query: 61 EIRPESQH------NPGQQS-DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
E++ E+QH NP + S F +IYLSKP E DG + ARLRNLTY++PLY
Sbjct: 72 ELQSENQHLGNDMENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLY 131
Query: 114 VDVTKRVIKKGHDGEEV---------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFI 164
VD+TK V + E+V P+MLRSSYC L + + LTEL ECP D GGYF+
Sbjct: 132 VDITKVVTRDDSVVEKVYEKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFV 191
Query: 165 INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSA 224
INGSEKVLIAQEKM+TN VYVF + KYA+ E S E+ +RP ST++V ML+R
Sbjct: 192 INGSEKVLIAQEKMATNTVYVFSMKD-GKYAFKTECRSCLENSSRPTSTMWVNMLARGGG 250
Query: 225 KGGSS--GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSL 282
G + GQ I LPYI+ EIPI+I+FRALGF +D DIL HI YDF+D +MME+++PSL
Sbjct: 251 GGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFEDPEMMEMVKPSL 310
Query: 283 EEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYF 338
+EAF IQ Q +IG RGA GVTRE+ IKYA+EILQKE+LPHVG + CETKKA++
Sbjct: 311 DEAFVIQEQNVALNFIGARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFI 370
Query: 339 GHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN 398
G+++HRLLL ALGRR DDRDH GNKRLDLAGPLL LFR LFR L ++R QK ++
Sbjct: 371 GYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRALFRNLLKEMRMTAQKYINK 430
Query: 399 GKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--- 454
D L +K TIT GL YSLATGNWG Q A +RAGVSQVLN LTY +T ++
Sbjct: 431 NDDFALDVCVKTSTITRGLAYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRA 490
Query: 455 -----LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFL 509
KLAKPRQLHN+QWGM+CPAETPEGQA GLVKNLALM YI++GS PILEFL
Sbjct: 491 NSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFL 550
Query: 510 EEWGTENFE 518
EEW EN E
Sbjct: 551 EEWSMENLE 559
>gi|268574492|ref|XP_002642223.1| C. briggsae CBR-RPB-2 protein [Caenorhabditis briggsae]
Length = 1194
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 314/554 (56%), Positives = 382/554 (68%), Gaps = 39/554 (7%)
Query: 3 MEEERLEEDEEEETT-------QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVD 55
M+++ +E+ +ET QE W VISAYF+EKGLVRQQLDSFDEF Q +Q IV+
Sbjct: 9 MQDDGNDEEYSDETAEISPDAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVE 68
Query: 56 ESADIEIRPESQH------NPGQQS-DFAEIYLSKPMMTESDGETATLFLKAARLRNLTY 108
+S +E++ E+QH NP + S F +IYLSKP E DG + ARLRNLTY
Sbjct: 69 DSPPVELQSENQHLGNDMENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTY 128
Query: 109 SAPLYVDVTKRVIKKGHDGEEV---------PIMLRSSYCTLYQNSQKALTELGECPYDE 159
++PLYVD+TK V + E+V P+MLRSSYC L + + LTEL ECP D
Sbjct: 129 ASPLYVDITKVVTRDESVNEKVYEKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDP 188
Query: 160 GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPML 219
GGYF+INGSEKVLIAQEKM+TN VYVF + KYA+ E S E+ +RP ST++V ML
Sbjct: 189 GGYFVINGSEKVLIAQEKMATNTVYVFSMKD-GKYAFKTECRSCLENSSRPTSTMWVNML 247
Query: 220 SRTSAKGGSS--GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMEL 277
+R G + GQ I LPYI+ EIPI+I+FRALGF +D DIL HI YDF+D +MME+
Sbjct: 248 ARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFEDPEMMEM 307
Query: 278 LRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETK 333
++PSL+EAF IQ Q +IG RGA GVTRE+ IKYA+EILQKE+LPHVG + CETK
Sbjct: 308 VKPSLDEAFVIQEQNVALNFIGARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETK 367
Query: 334 KAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQ 393
KA++ G+++HRLLL ALGRR DDRDH GNKRLDLAGPLL LFR LFR L ++R Q
Sbjct: 368 KAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRALFRNLLKEMRMTAQ 427
Query: 394 KCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFT 452
K ++ D L +K TIT GL YSLATGNWG Q A +RAGVSQVLN LTY +T +
Sbjct: 428 KYINKNDDFALDVCVKTSTITRGLAYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLS 487
Query: 453 YY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYP 504
+ KLAKPRQLHN+QWGM+CPAETPEGQA GLVKNLALM YI++GS P
Sbjct: 488 HLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEP 547
Query: 505 ILEFLEEWGTENFE 518
ILEFLEEW EN E
Sbjct: 548 ILEFLEEWSMENLE 561
>gi|393244464|gb|EJD51976.1| DNA-dependent RNA polymerase II second largest subunit [Auricularia
delicata TFB-10046 SS5]
Length = 1217
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 303/548 (55%), Positives = 381/548 (69%), Gaps = 47/548 (8%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
+ TQE+ W +IS++FEEKGLVRQQLDSFDEF QNTMQE+VDE+A++ + QH GQ+
Sbjct: 23 DITQEDCWTIISSFFEEKGLVRQQLDSFDEFVQNTMQELVDENAELILHQGDQHT-GQEG 81
Query: 75 D--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK-------R 119
D F +IYLS+P +TE+DG +F + ARLRNLTYSAPLYV++ +
Sbjct: 82 DANLRHEIKFGQIYLSRPTITEADGSVTPVFPQEARLRNLTYSAPLYVEMRRSRLTGRES 141
Query: 120 VIKKG-----HDGEE-----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
+ K G D E VPIMLRSS+C L S + L +L ECPYD+GGYF
Sbjct: 142 MTKPGDYDWQRDPNESTTMQKIWIGKVPIMLRSSFCILKTLSDRDLYDLNECPYDQGGYF 201
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS 223
IINGSEKVLIAQE+M+ NHVYVF K QP+ ++AE+ S E + S+ V M R
Sbjct: 202 IINGSEKVLIAQERMAANHVYVFAKAQPSPINFLAEIRSAVEKGGKTISSFQVKMFHRNQ 261
Query: 224 AKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLE 283
K +SG I AT+PYI+ +IPI I+FRALG +D DILEHICYD D M+E+L+P ++
Sbjct: 262 EK--TSGNTIKATIPYIKQDIPIWIVFRALGVMSDRDILEHICYDMHDVTMLEMLKPCID 319
Query: 284 EAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFG 339
E F IQ ++ +IG RG T G+ +E+ ++YA+EILQKEMLPH+ + E+KKAY+ G
Sbjct: 320 EGFVIQEREQALSFIGVRGTTTGLNKERRLRYAQEILQKEMLPHISMAEGSESKKAYFLG 379
Query: 340 HIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNG 399
++IHRLLL AL RR DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV+
Sbjct: 380 YMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLASLFRMLFRKLTKDVYRYLQKCVEAR 439
Query: 400 KDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY---- 454
K+ NL A+KA TIT GLKYSLATGNWG Q + +AGVSQVLN T+AST ++
Sbjct: 440 KEFNLSLAVKANTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTFASTLSHLRRTN 499
Query: 455 ----LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLE 510
K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM I++GS + P++EFLE
Sbjct: 500 TPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFLE 559
Query: 511 EWGTENFE 518
EWG E+ E
Sbjct: 560 EWGLESLE 567
>gi|358337637|dbj|GAA55991.1| DNA-directed RNA polymerase II subunit RPB2 [Clonorchis sinensis]
Length = 1921
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 314/550 (57%), Positives = 379/550 (68%), Gaps = 58/550 (10%)
Query: 5 EERLEEDEE--EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI 62
+ER ED+E + QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q+IV++S IE+
Sbjct: 770 DERDAEDDEITPDMWQEACWIVISSYFDEKGLVRQQLDSFDEFIQTSIQKIVEDSPIIEL 829
Query: 63 RPESQHNPG-------QQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVD 115
+ E+QH G + F +IYLSK E DG + + ARLRNLTY+APLYVD
Sbjct: 830 QAEAQHTSGVLETPVQYRLKFEQIYLSKATHWEKDGSSVPMTPNDARLRNLTYAAPLYVD 889
Query: 116 VTKRVIKKGHDGEE-----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFI 164
V K++I+ DGEE +PIMLRS+YC L S + L EL ECP D GGYFI
Sbjct: 890 VMKKIIRD--DGEEEKPLEKKFIGKIPIMLRSTYCLLSIMSDRDLAELNECPLDPGGYFI 947
Query: 165 INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSA 224
INGSEKVLIAQEKM+TN V E +RP ST+++ M++R
Sbjct: 948 INGSEKVLIAQEKMATNTVL--------------------EHSSRPASTLWINMMARGGK 987
Query: 225 KG---GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
G + GQ I A LPYI+ EIP++I+FRALGF AD DILEHI YDF DT+M E+++PS
Sbjct: 988 DGSKRATIGQRIVAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMREMIKPS 1047
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L++AF IQ Q+ +IG RGA GVT+EK IKYAKEILQKE LPHVG DFCET+KAY+
Sbjct: 1048 LDDAFVIQEQKVALNFIGSRGARPGVTKEKRIKYAKEILQKETLPHVGVSDFCETRKAYF 1107
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL AL RR DDRDHYGNKRLDLAGPLL LFR LFR LT ++R Y QK +D
Sbjct: 1108 LGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEIRLYAQKFID 1167
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
GKD NL+ AI+++ IT GLKYSLATGNWG Q A R GVSQVLN LT+AST ++
Sbjct: 1168 KGKDFNLELAIRSQIITDGLKYSLATGNWGDQKKANQARPGVSQVLNRLTFASTLSHLRR 1227
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLA+PRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEF
Sbjct: 1228 LNSPIGRDGKLARPRQLHNTLWGMICPAETPEGSAVGLVKNLALMAYISVGSQPSPILEF 1287
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 1288 LEEWSMENLE 1297
>gi|170591608|ref|XP_001900562.1| DNA-directed RNA polymerase II second largest subunit [Brugia
malayi]
gi|158592174|gb|EDP30776.1| DNA-directed RNA polymerase II second largest subunit, putative
[Brugia malayi]
Length = 1185
Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust.
Identities = 312/550 (56%), Positives = 371/550 (67%), Gaps = 47/550 (8%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E QE W VISAYF+EKGLVRQQLDSFDEF Q +Q IV++S +E++ E QH G
Sbjct: 22 EQWQEACWVVISAYFDEKGLVRQQLDSFDEFIQMNVQRIVEDSPPVELQSEVQHFSGDVE 81
Query: 75 D-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
+ F +IYLSKP E DG + ARLRNLTYS+PLY+D+TK + + G +
Sbjct: 82 NPIKFALKFDQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSSPLYIDITKTMTRSGEEP 141
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
+E +PIMLRSSYC L S + L+EL ECP D GGYF+INGSEKVLIAQEK
Sbjct: 142 KETKYEKVFVGKIPIMLRSSYCMLANMSDRDLSELNECPLDPGGYFVINGSEKVLIAQEK 201
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQ--------------NRPPSTIFVPMLSRTS 223
M+TN VYVF + KY Y E S E+ RP ST++V ML R
Sbjct: 202 MATNTVYVFSMKD-GKYTYKTECRSCLENSRQVLKQYFLSILEVTRPTSTLWVNMLPRGG 260
Query: 224 --AKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
+K + G I A LPYI+ EIP++I+FRALGF +D DILEHI YDF+D +MME+++PS
Sbjct: 261 GGSKKSAMGPKIIAILPYIKQEIPVMIVFRALGFVSDHDILEHIIYDFEDPEMMEMVKPS 320
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+E+ IKYA+EILQKEMLPHVG DFCETKKAY+
Sbjct: 321 LDEAFVIQEQNVALNFIGARGAKPGVTKEQRIKYAREILQKEMLPHVGISDFCETKKAYF 380
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL ALGRR DDRDH GNKRLDLAGPLL LFR LFR L +VR QK ++
Sbjct: 381 LGYMVHRLLLAALGRRELDDRDHMGNKRLDLAGPLLAFLFRALFRNLLKEVRLTAQKYIN 440
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
D L +K IT GL YSLATGNWG Q A +RAGVSQVLN LTY +T ++
Sbjct: 441 KNGDFMLDLCVKTPLITRGLAYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRR 500
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+QWGM+CPAETPEGQA GLVKNLALM YI++GS PILEF
Sbjct: 501 CNSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEF 560
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 561 LEEWSMENLE 570
>gi|388582011|gb|EIM22317.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1198
Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust.
Identities = 293/544 (53%), Positives = 379/544 (69%), Gaps = 45/544 (8%)
Query: 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS--- 74
QE+ W VIS++F+EKGLVRQQ+DSFDEF QNTMQEIV+E+ + + +Q+ +
Sbjct: 4 QEDCWTVISSFFDEKGLVRQQIDSFDEFVQNTMQEIVEENQKLTLDQFNQYTQHKNDTTR 63
Query: 75 ----DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE-- 128
F +IYLS+P MTE+DG + +F ARLRNLTYSAP+Y+D+ KRV+ + D E
Sbjct: 64 RYEIQFGQIYLSRPTMTEADGSVSPMFPHEARLRNLTYSAPIYIDMKKRVLVQVEDDETG 123
Query: 129 ---------------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIING 167
+VPIML+S++C L L+EL ECP+D+GGYFIING
Sbjct: 124 DLIWVPEFDEEHDETTKVWIGKVPIMLKSTFCNLNNVDSARLSELNECPFDQGGYFIING 183
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+++ NHVY+F K +P+ +Y AE+ S E + S++ + M R +G
Sbjct: 184 SEKVLIAQERLAANHVYIFAKAEPSPVSYQAEIRSAMEKGGKTVSSMQIKMFRR--PQGN 241
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
+ + AT+PYI+ EIPIII+FRALG D +ILEHIC+DF D+QM++LL+P +EEAF
Sbjct: 242 AQADTMRATIPYIKNEIPIIIVFRALGIVPDREILEHICFDFDDSQMLDLLKPCIEEAFV 301
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
+Q+Q +IG+RG T G++++K I+YAK+ILQKEMLPHV T + ETKKAY+FG++IH
Sbjct: 302 VQDQNVALDFIGRRGTTTGLSKDKRIRYAKDILQKEMLPHVATNEGSETKKAYFFGYMIH 361
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RL+L L RR DDRDH+G KRLDL GPLL LFR LFRKLT DV Y+QKCV+ K+ N
Sbjct: 362 RLMLARLERRELDDRDHFGKKRLDLGGPLLASLFRMLFRKLTKDVYRYMQKCVETHKEFN 421
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
L A+KA TIT GLKYSLATGNWG Q RAGVSQVLN T+AST ++
Sbjct: 422 LNQAVKANTITNGLKYSLATGNWGDQKKFMQARAGVSQVLNRYTFASTLSHLRRCNTPIG 481
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM ++ GS++ PI +FL+EWG
Sbjct: 482 RDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMANVSTGSSSAPIQDFLQEWGM 541
Query: 515 ENFE 518
E E
Sbjct: 542 EELE 545
>gi|389751199|gb|EIM92272.1| DNA-dependent RNA polymerase II second largest subunit [Stereum
hirsutum FP-91666 SS1]
Length = 1230
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 294/549 (53%), Positives = 384/549 (69%), Gaps = 50/549 (9%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD- 75
+QE+ W VIS++F+EKGLVRQQLDSFDEF QNTMQE+++E+AD+ + QH G +D
Sbjct: 32 SQEDCWTVISSFFDEKGLVRQQLDSFDEFVQNTMQELIEENADLILDQADQHT-GHDNDV 90
Query: 76 -------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR--VIKKGHD 126
F ++YLS+ +TE+DG +F + ARLRNLTYS+PLYV+V +R V ++ D
Sbjct: 91 TRRYELHFNQVYLSRATVTEADGSVVPVFPQEARLRNLTYSSPLYVEVARRFSVGREDPD 150
Query: 127 GE------------------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGY 162
G+ ++P+MLRS +C L + + L +L ECPYD GGY
Sbjct: 151 GQAGEINWEVEVDEISTKEFQKVWIGKLPLMLRSQFCILSELGENELYDLNECPYDSGGY 210
Query: 163 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRT 222
FIINGSEKVLIAQE+M+TNHVYVF K QP+ ++AE+ S E + S V M R
Sbjct: 211 FIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMYHRN 270
Query: 223 SAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSL 282
K +SG I AT+PYI+ +IPI ++FRALG +D DILEHICYD +D QM+E+L+P +
Sbjct: 271 QDK--TSGNVIKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMEDAQMLEMLKPCI 328
Query: 283 EEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYF 338
++ F IQ+++ +IG RG T G++RE+ ++YA+EILQKEMLPH+ + E+KKAY+F
Sbjct: 329 DDGFVIQDREIALDFIGNRGTTTGLSRERRLRYAQEILQKEMLPHISMSEGSESKKAYFF 388
Query: 339 GHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN 398
G++IHRLLL A+ RR DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV+
Sbjct: 389 GYMIHRLLLAAMERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVET 448
Query: 399 GKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW 457
KD NL A+K TIT GLKYSLATGNWG Q + ++AGVSQVLN TYAST ++
Sbjct: 449 HKDFNLNLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRC 508
Query: 458 --------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFL 509
K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM I++GS + P+++FL
Sbjct: 509 NTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATISVGSLSLPVIDFL 568
Query: 510 EEWGTENFE 518
EEWG E+ E
Sbjct: 569 EEWGLESLE 577
>gi|308487676|ref|XP_003106033.1| CRE-RPB-2 protein [Caenorhabditis remanei]
gi|308254607|gb|EFO98559.1| CRE-RPB-2 protein [Caenorhabditis remanei]
Length = 1207
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 316/562 (56%), Positives = 379/562 (67%), Gaps = 47/562 (8%)
Query: 3 MEEERLEEDEEEETT-------QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVD 55
ME +E D +ET QE W VISAYF+EKGLVRQQLDSFDEF Q +Q IV+
Sbjct: 15 MENVPMEGDYNDETDEISAEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVE 74
Query: 56 ESADIEIRPESQH------NPGQQS-DFAEIYLSKPMMTESDGETATLFLKAARLRNLTY 108
+S +E++ E+QH NP + S F +IYLSKP E DG + ARLRNLTY
Sbjct: 75 DSPPVELQSENQHLGNDMENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTY 134
Query: 109 SAPLYVDVTKRVIKKGHDGEEV---------PIMLRSSYCTLYQNSQKALTELGECPYDE 159
++PLYVD+TK V + E+V P+MLRSSYC L + + LTEL ECP D
Sbjct: 135 ASPLYVDITKVVTRDDSVNEKVYEKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDP 194
Query: 160 GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPML 219
GGYF+INGSEKVLIAQEKM+TN VYVF + KYA+ E S E+ +RP ST++V ML
Sbjct: 195 GGYFVINGSEKVLIAQEKMATNTVYVFSMKD-GKYAFKTECRSCLENSSRPTSTMWVNML 253
Query: 220 SRTSAKGGSS--GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMEL 277
+R G + GQ I LPYI+ EIPI+I+FRALGF +D DIL HI YDF D +MME+
Sbjct: 254 ARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFDDPEMMEM 313
Query: 278 LRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETK 333
++PSL+EAF IQ Q +IG RGA GVTRE+ IKYA+EILQKE+LPHVG + CETK
Sbjct: 314 VKPSLDEAFVIQEQNVALNFIGARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETK 373
Query: 334 KAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGD------ 387
KA++ G+++HRLLL ALGRR DDRDH GNKRLDLAGPLL LFR LFR L +
Sbjct: 374 KAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRALFRNLLKEKMITSC 433
Query: 388 --VRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNC 444
+R QK ++ D L +K TIT GL YSLATGNWG Q A +RAGVSQVLN
Sbjct: 434 IQMRMTAQKYINKNDDFALDVCVKTSTITRGLAYSLATGNWGDQKKAHQSRAGVSQVLNR 493
Query: 445 LTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 496
LTY +T ++ KLAKPRQLHN+QWGM+CPAETPEGQA GLVKNLALM YI
Sbjct: 494 LTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYI 553
Query: 497 TIGSAAYPILEFLEEWGTENFE 518
++GS PILEFLEEW EN E
Sbjct: 554 SVGSLPEPILEFLEEWSMENLE 575
>gi|302698289|ref|XP_003038823.1| DNA-dependent RNA polymerase II second largest subunit
[Schizophyllum commune H4-8]
gi|300112520|gb|EFJ03921.1| DNA-dependent RNA polymerase II second largest subunit
[Schizophyllum commune H4-8]
Length = 1204
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 294/556 (52%), Positives = 385/556 (69%), Gaps = 50/556 (8%)
Query: 9 EEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH 68
E++++ TQE+ W VIS++F+EKGLVRQQLDSFDEF QNTMQE+VDE+ ++ + QH
Sbjct: 6 EDEDDNSITQEDCWTVISSFFDEKGLVRQQLDSFDEFIQNTMQELVDENPELILDQAEQH 65
Query: 69 NPGQQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV 120
G D F +IYLS+P +TE+DG +F + ARLRNLTY+APLY+++ ++
Sbjct: 66 T-GHNFDQSKRFEIQFGQIYLSRPTITEADGSVVPVFPQEARLRNLTYAAPLYIEMRQKT 124
Query: 121 -------------------------IKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGEC 155
++K H G+ VPIMLRS++C L + S + + +L EC
Sbjct: 125 LHATDELDEAGEPIWRTVKEDEGNAVQKVHIGK-VPIMLRSAFCILNKLSDQEIYDLNEC 183
Query: 156 PYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIF 215
PYD GGYFIINGSEKVLIAQE+M+TNHVYVF K QP+ ++AE+ S E + S
Sbjct: 184 PYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQ 243
Query: 216 VPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMM 275
V M RT + S G I AT+PYI+ +IPI ++FRAL +D DIL+HICY+ D QM+
Sbjct: 244 VKMFHRTKER--SMGNVIKATIPYIKVDIPIWVVFRALNVISDRDILDHICYESTDPQML 301
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
ELL+P +++ F IQ ++ +IG RG T G+ RE+ ++YA+EILQKE+LPHV + E
Sbjct: 302 ELLKPCIDDGFVIQEREVALDFIGNRGTTTGLNRERRVRYAQEILQKELLPHVSMAEGSE 361
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
+KKAY+FG+++HRLLL AL RR DDRDH+G KRLDLAGPLL GLFR LFRK+T DV Y
Sbjct: 362 SKKAYFFGYMVHRLLLAALERRELDDRDHFGKKRLDLAGPLLAGLFRMLFRKMTKDVYRY 421
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAST 450
+QKCV++ KD NL AIK TI+ GLKYSLATGNWG Q A +AGVSQVLN TYAST
Sbjct: 422 LQKCVESNKDFNLNLAIKHHTISQGLKYSLATGNWGDQKKAGAAKAGVSQVLNRYTYAST 481
Query: 451 FTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAA 502
++ K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM I++GS +
Sbjct: 482 LSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSIS 541
Query: 503 YPILEFLEEWGTENFE 518
P+++FL+EW E+ E
Sbjct: 542 APVIDFLQEWNLESLE 557
>gi|355712719|gb|AES04443.1| polymerase II polypeptide B, 140kDa [Mustela putorius furo]
Length = 1104
Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust.
Identities = 304/507 (59%), Positives = 365/507 (71%), Gaps = 33/507 (6%)
Query: 44 EFNQNTMQEIVDESADIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATL 96
EF Q ++Q IV+++ I+++ E+QH G+ + F +IYLSKP E DG + +
Sbjct: 1 EFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPM 60
Query: 97 FLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQ 146
ARLRNLTYSAPLYVD+TK VIK+G + + +PIMLRS+YC L +
Sbjct: 61 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 120
Query: 147 KALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAES 206
+ L EL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+ +KYAY E S E+
Sbjct: 121 RDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLEN 179
Query: 207 QNRPPSTIFVPMLSR--TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEH 264
+RP STI+V ML+R AK + GQ I ATLPYI+ E+PIII+FRALGF +D DILEH
Sbjct: 180 SSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEH 239
Query: 265 ICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEM 320
I YDF+D +MME+++PSL+EAF IQ Q +IG RGA GVT+EK IKYAKE+LQKEM
Sbjct: 240 IIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEM 299
Query: 321 LPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTL 380
LPHVG DFCETKKAY+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +
Sbjct: 300 LPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGM 359
Query: 381 FRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVS 439
F+ L +VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVS
Sbjct: 360 FKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVS 419
Query: 440 QVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 491
QVLN LT+AST ++ KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLA
Sbjct: 420 QVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLA 479
Query: 492 LMVYITIGSAAYPILEFLEEWGTENFE 518
LM YI++GS PILEFLEEW EN E
Sbjct: 480 LMAYISVGSQPSPILEFLEEWSMENLE 506
>gi|323449030|gb|EGB04921.1| hypothetical protein AURANDRAFT_38738 [Aureococcus anophagefferens]
Length = 1147
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 288/505 (57%), Positives = 365/505 (72%), Gaps = 38/505 (7%)
Query: 50 MQEIVDESADIEIRPESQHNPGQQSD--------FAEIYLSKPMMTESDGETATLFLKAA 101
MQE+VD+S ++ ++PE+Q+ PGQ+S F ++Y+SKP TE DG T+ +F A
Sbjct: 1 MQELVDDSGELTVKPETQYTPGQESVTRSTFAVLFNQVYVSKPTATERDGTTSNMFPHEA 60
Query: 102 RLRNLTYSAPLYVDVTK----RVIKKGHDGEE------------VPIMLRSSYCTLYQNS 145
RLRN+TYS+P+YVD++ R+ DG VPIMLRS +C L S
Sbjct: 61 RLRNMTYSSPMYVDISVNSACRIRMLAEDGSTHRIDSPKEFLGYVPIMLRSRFCVLADKS 120
Query: 146 QKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAE 205
K L ELGEC YD+GGYF+INGSEKV++AQE+MS NHVY F+K+QP+KY++V E S E
Sbjct: 121 DKELCELGECIYDQGGYFVINGSEKVVVAQERMSNNHVYCFRKKQPHKYSWVVECRSHVE 180
Query: 206 SQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHI 265
RP STI++ M ++ + +G S G I TLPYIR ++P+II+FRALGF AD DILEH+
Sbjct: 181 HGARPTSTIYMQMYNK-AGRGQSQGNQIRMTLPYIRVDVPVIIVFRALGFVADRDILEHV 239
Query: 266 CYDFQDTQMMELLRPSLEEAFFIQNQ----QYIGKRGATVGVTREKMIKYAKEILQKEML 321
YDF DT+MME LRPSL+EAF +QNQ +IG+RG+ + R K ++YAKE+LQKE+L
Sbjct: 240 VYDFSDTEMMEQLRPSLDEAFVVQNQTIALDFIGRRGSATNIGRSKRVQYAKELLQKEVL 299
Query: 322 PHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLF 381
PHVGT + +TKKA++ G+I+H+LL+C+L R EDDRDHYG KRLDLAGPLLGGLFR LF
Sbjct: 300 PHVGTEEQSDTKKAFFVGYIVHKLLMCSLERIDEDDRDHYGKKRLDLAGPLLGGLFRMLF 359
Query: 382 RKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQV 441
RKLT DV +Y+QKC+D G+D NL AIK++ IT GL+YSLATGNWG A +RAGVSQV
Sbjct: 360 RKLTKDVLAYLQKCIDEGRDFNLASAIKSRVITDGLRYSLATGNWGDRKDA-SRAGVSQV 418
Query: 442 LNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 493
LN LTYAST ++ K AKPRQLHN+ WG +CPAETPEGQA GLVKNLALM
Sbjct: 419 LNRLTYASTLSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALM 478
Query: 494 VYITIGSAAYPILEFLEEWGTENFE 518
Y+++GS PILEFLEEW EN E
Sbjct: 479 SYVSVGSPQSPILEFLEEWSMENLE 503
>gi|68300857|gb|AAY89365.1| RNA polymerase IV second largest subunit precursor [Chlamydomonas
reinhardtii]
Length = 1607
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 298/548 (54%), Positives = 383/548 (69%), Gaps = 37/548 (6%)
Query: 6 ERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPE 65
E ++E+E+ E QE++W VI+A+F++KGLVRQQLDSF+EF T+QEI+DE+ +I I+PE
Sbjct: 2 EVVQEEEDTEIVQEDSWNVITAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETPEIVIKPE 61
Query: 66 SQHNPGQQS--------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT 117
SQH PG ++ F ++YLS+P +TE DGE+ LF K ARLRNLTY APLYVDVT
Sbjct: 62 SQHLPGVEAAEEKEYIIKFGQVYLSRPQITEQDGESVVLFPKEARLRNLTYCAPLYVDVT 121
Query: 118 KRVIKKGHDGE-------------EVPIMLRSSYCTLYQNS-QKALTELGECPYDEGGYF 163
K + + E +VPIML+S C L++ S ++ T LGECPYD+GGYF
Sbjct: 122 KTEYTRVGENEVEEKTDLSHVHLGKVPIMLKSERCNLHEASTEQEATNLGECPYDQGGYF 181
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS 223
+INGSEKVLIAQE+M+ NHVYVFKK QP+KY + AE+ S+ E R S++ + ML++
Sbjct: 182 VINGSEKVLIAQERMANNHVYVFKKSQPSKYTFCAEIRSVVEGSTRSASSMSIMMLAKGK 241
Query: 224 AKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQ-DTQMMELLRPSL 282
+ I A +PYIR E PI ILFRALGF +D DILEHI YD D M+E LR S+
Sbjct: 242 KA--GAAGVIRAQIPYIRAEFPIFILFRALGFVSDRDILEHIVYDLDADPAMLEALRSSV 299
Query: 283 EEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYF 338
EEA +Q Q+ Y+GKRG G ++ I+YA+ +L KE+LPH+GT +F ET+K Y+
Sbjct: 300 EEAQEVQTQEEALNYLGKRGTVTGASKADRIQYARNLLIKELLPHLGTEEFMETRKGYFV 359
Query: 339 GHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN 398
G+++HRL+L ALGRR EDDRDHY NKRLDL GPL+ GLFR LFRKL ++R Q+ VD
Sbjct: 360 GYMVHRLMLVALGRRPEDDRDHYANKRLDLGGPLMAGLFRLLFRKLCKELRMQAQRMVDA 419
Query: 399 GKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY---- 454
GK++N+ AI K IT GLKYSLATGNWG+ G RAGVSQVL LTYAST ++
Sbjct: 420 GKEINVISAINDKVITRGLKYSLATGNWGEQGKQGIRAGVSQVLARLTYASTLSHLRRVN 479
Query: 455 ----LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLE 510
KLAKPRQLHNS WG+ CPAETPEGQA GLVKN+ALM YIT+G+ + P++ LE
Sbjct: 480 SPIGREGKLAKPRQLHNSLWGIFCPAETPEGQAVGLVKNMALMCYITVGTPSLPVVAHLE 539
Query: 511 EWGTENFE 518
E+ TE +
Sbjct: 540 EFNTEALD 547
>gi|402219896|gb|EJT99968.1| DNA-dependent RNA polymerase II second largest subunit [Dacryopinax
sp. DJM-731 SS1]
Length = 1258
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 295/560 (52%), Positives = 386/560 (68%), Gaps = 49/560 (8%)
Query: 2 MMEEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIE 61
+ EE E E +QE+ W +I+++FEEKGLVRQQLDSFDEF QN+MQE+VDES ++
Sbjct: 43 LQTEEGYEGIPEGPLSQEDCWQIITSFFEEKGLVRQQLDSFDEFVQNSMQEVVDESGELI 102
Query: 62 IRPESQHNPGQQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+ +QH+ G++ D F +IYLS+P E DG +F + ARLRNLTYSAPLY
Sbjct: 103 LDQANQHS-GRELDETKRYELSFGQIYLSRPSTMEPDGSNLPIFPQEARLRNLTYSAPLY 161
Query: 114 VDVTKRVIKKGHDGEEV-------------------------PIMLRSSYCTLYQNSQKA 148
+DV KRV+ + E+V P+MLRS++C L S
Sbjct: 162 IDVKKRVLSGRENPEDVNGEMIWESQNTDADKEIHKIWVGKVPVMLRSTFCILSGLSDGD 221
Query: 149 LTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQN 208
L +L ECPYD+GGYFIINGSEKVLIAQE+M+ NHVYVF K QP+ +++AE+ S E
Sbjct: 222 LYDLNECPYDQGGYFIINGSEKVLIAQERMAANHVYVFAKAQPSPISHLAEIRSQVEKGG 281
Query: 209 RPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYD 268
+ S + + M R K S+G + A LPYIR +IP++++FRALG D D+LEHICYD
Sbjct: 282 KQISLLQIKMTHRNLEK--STGSLMRAQLPYIRNDIPVVVVFRALGIVPDRDVLEHICYD 339
Query: 269 FQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHV 324
+D M+E+L+P +EEAF IQ+++ YIG+RG T G++R+K ++YA+EILQKEMLPH+
Sbjct: 340 PEDHAMLEMLKPCIEEAFVIQDREVALDYIGRRGTTTGLSRDKRLRYAQEILQKEMLPHI 399
Query: 325 GTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKL 384
T + E+KKAY+FG+++HRL+L AL RR DDRDH+G KRLDLAGPLL LFR LFR+L
Sbjct: 400 STQEGAESKKAYFFGYMVHRLVLAALDRRELDDRDHFGKKRLDLAGPLLATLFRMLFRRL 459
Query: 385 TGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLN 443
T DV Y+QKCV+ ++ N+ A+K TIT GLKYSLATGNWG Q +AGVSQVLN
Sbjct: 460 TKDVYRYMQKCVETHREFNINAAVKPATITNGLKYSLATGNWGDQKKFMQAKAGVSQVLN 519
Query: 444 CLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY 495
T+AST ++ K+A+PRQLHN+ WGM+CPAETPEGQACGLVKNLALM
Sbjct: 520 RYTFASTLSHLRRTNTPIGRDGKIARPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAC 579
Query: 496 ITIGSAAYPILEFLEEWGTE 515
I++GS + P++EFLEEWG E
Sbjct: 580 ISVGSLSQPVVEFLEEWGLE 599
>gi|302832249|ref|XP_002947689.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
nagariensis]
gi|300267037|gb|EFJ51222.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
nagariensis]
Length = 1206
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 299/550 (54%), Positives = 383/550 (69%), Gaps = 39/550 (7%)
Query: 6 ERLEEDE-EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRP 64
E +EDE ++E QE++W VI+A+F++KGLVRQQLDSF+EF T+QEI+DE+ +I I+P
Sbjct: 10 EVAQEDEGDDEIVQEDSWNVITAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETPEIVIKP 69
Query: 65 ESQHNPGQQS--------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV 116
ESQH PG ++ F ++YLS+P +TE DGE+ LF K ARLRNLTY APLYVDV
Sbjct: 70 ESQHLPGVEAHEEKEYIIKFGQVYLSRPQITEQDGESVVLFPKEARLRNLTYCAPLYVDV 129
Query: 117 TKRVIKKGHDGE--------------EVPIMLRSSYCTLYQN-SQKALTELGECPYDEGG 161
TK + D +VPIML+S C L++ +++ T LGECPYD+GG
Sbjct: 130 TKTEYTRQADDTVEEKQETLSHVHLGKVPIMLKSERCNLHEAATEQEATNLGECPYDQGG 189
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YF+INGSEKVLIAQE+M+ NHVYVFKK QP+KY + AE+ S+ E R S++ + ML++
Sbjct: 190 YFVINGSEKVLIAQERMANNHVYVFKKSQPSKYTFCAEIRSVVEGSTRSASSMSIMMLAK 249
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDF-QDTQMMELLRP 280
+ I A +PYIR E PI ILFRALGF +D DILEHI YD D M+E LR
Sbjct: 250 GKKA--GAAGVIRAQIPYIRAEFPIFILFRALGFVSDRDILEHIVYDLDSDPAMLEALRA 307
Query: 281 SLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAY 336
S+EEA +Q Q+ Y+GKRG G ++ I+YA+ +L KE+LPH+GT +F ET+K Y
Sbjct: 308 SVEEAQEVQTQEEALNYLGKRGTVTGASKADRIQYARNLLIKELLPHLGTEEFMETRKGY 367
Query: 337 YFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
+ G+++HRL+L ALGRR EDDRDHY NKRLDL GPL+ GLFR LFRKL ++R + Q+ V
Sbjct: 368 FVGYMVHRLMLVALGRRPEDDRDHYANKRLDLGGPLMAGLFRLLFRKLCKELRMHAQRMV 427
Query: 397 DNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY-- 454
D GK++N+ AI K IT GLKYSLATGNWG+ G RAGVSQVL LTYAST ++
Sbjct: 428 DAGKEINVLSAINEKIITRGLKYSLATGNWGEQGKQGIRAGVSQVLARLTYASTLSHLRR 487
Query: 455 ------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHNS WGM CPAETPEGQA GLVKN+ALM YIT+G+ + P++
Sbjct: 488 VNSPIGREGKLAKPRQLHNSLWGMFCPAETPEGQAVGLVKNMALMCYITVGTPSLPVVAH 547
Query: 509 LEEWGTENFE 518
LEE+ TE +
Sbjct: 548 LEEFNTEALD 557
>gi|339250694|ref|XP_003374332.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
gi|316969378|gb|EFV53485.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
Length = 1190
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 304/542 (56%), Positives = 374/542 (69%), Gaps = 41/542 (7%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNP 70
D E QE W VISAYF+EKGLVRQQLDSFDEF Q ++Q++V++S +EI+ E
Sbjct: 38 DISSEMWQEACWVVISAYFDEKGLVRQQLDSFDEFIQMSVQKLVEDSPPVEIQLEDHGAQ 97
Query: 71 GQQS-----DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGH 125
G F +IYLSKP E DG A L ARLRNLTYSAPLYVD+TK + K
Sbjct: 98 GLSETKFSIKFEQIYLSKPTHWEKDGAPAPLMPNEARLRNLTYSAPLYVDITKTIAKSNE 157
Query: 126 DG----------EEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQ 175
+ ++PIMLRS+YC L + S++ LT+L ECP D GGYFIINGSEKVLIAQ
Sbjct: 158 EPLIAKYEKVFIGKIPIMLRSTYCLLNRLSERDLTDLNECPLDPGGYFIINGSEKVLIAQ 217
Query: 176 EKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS------ 229
EKM+TN VYVF + NK+A+ AE S ES +RP ST++V M +R G ++
Sbjct: 218 EKMATNTVYVFSLKD-NKFAFKAECRSCLESSSRPTSTLWVNMYARGGGHGAANTKKQLM 276
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
GQ I LPY++ E+P+I++FRALGF +D DILEHI YDF D +MME+++PSL+EAF IQ
Sbjct: 277 GQRIVVNLPYVKQELPVIVVFRALGFVSDRDILEHIVYDFDDAEMMEMVKPSLDEAFVIQ 336
Query: 290 NQ----QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRL 345
Q +IG RG G+TREK +KYA+EILQKE LPHVG DFCETKKAY+ G+++HRL
Sbjct: 337 EQSVALNFIGSRGVQPGITREKRVKYAREILQKETLPHVGISDFCETKKAYFLGYMVHRL 396
Query: 346 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQ 405
LL A+GRR DDRDHYGNKRLDLAGPL GLF+ L + +V+ Q+ ++ D NL+
Sbjct: 397 LLAAMGRRELDDRDHYGNKRLDLAGPL--GLFKNLLK----EVKMVAQRYINKTGDFNLE 450
Query: 406 FAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW------- 457
++ +T GL+YSLATGNWG Q A TRAGVSQVLN LTYA+T ++
Sbjct: 451 LCVRTGILTKGLQYSLATGNWGDQKKAHQTRAGVSQVLNRLTYAATLSHLRRLNSPIGRE 510
Query: 458 -KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
KLAKPRQLHN+ WGM+CPAETPEGQA GLVKNLALM YI++GS PILEFLEEW E
Sbjct: 511 GKLAKPRQLHNTLWGMICPAETPEGQAVGLVKNLALMAYISVGSQQEPILEFLEEWSMET 570
Query: 517 FE 518
E
Sbjct: 571 LE 572
>gi|313227690|emb|CBY22838.1| unnamed protein product [Oikopleura dioica]
Length = 1187
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 304/537 (56%), Positives = 377/537 (70%), Gaps = 35/537 (6%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ--- 72
T E W +I+AYF+EKGLVRQQL+SFDEF ++Q IV+ES IE++ E +N G+
Sbjct: 20 TWHESCWTIITAYFDEKGLVRQQLESFDEFITMSVQRIVEESPVIELQSEPNYNAGEPEE 79
Query: 73 ----QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK----KG 124
Q F +IYLSKP E L ARLRNLTY APLYVD+ + I+ +
Sbjct: 80 PTKYQIKFEQIYLSKPTHWEVGTGPNPLMPNEARLRNLTYCAPLYVDINRTTIRSDDPRP 139
Query: 125 HDGE-------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
H+ + ++PIMLRS YC L S + LTEL ECP D GGYF+INGSEKV+IAQEK
Sbjct: 140 HEEKHEKIFIGQIPIMLRSEYCLLSGLSDRDLTELNECPLDPGGYFVINGSEKVVIAQEK 199
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR---TSAKGGSSGQYIH 234
M+ N VYVF+K+ +KY AE S E+ +RP STI++ +L+R T K + G+ I
Sbjct: 200 MANNTVYVFEKKD-SKYELTAECRSCLENSSRPTSTIWINLLARSGGTGVKKSAIGRRIA 258
Query: 235 ATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ--- 291
A LPY++ + PIII+FRALGF +D DILEHI YDF D MME+++PS++EAF IQ +
Sbjct: 259 AILPYVKQDTPIIIVFRALGFVSDRDILEHIVYDFDDPDMMEMVKPSIDEAFVIQEEAVA 318
Query: 292 -QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCAL 350
+IGKRGA GVTREK +KYAKEILQKE+LPHVG ++CETKKAY+ G++++R+L L
Sbjct: 319 LDFIGKRGARPGVTREKRMKYAKEILQKELLPHVGISEYCETKKAYFLGYMVNRILQAGL 378
Query: 351 GRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKA 410
GRR EDDRDHYGNKR+DLAGPLL LFR+LF+KLT D R QK ++ GK +N+ AIK
Sbjct: 379 GRRGEDDRDHYGNKRMDLAGPLLAFLFRSLFKKLTKDARIAAQKEIEKGKPMNVLTAIKT 438
Query: 411 KTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAK 461
K IT GLKYSLATGNWG Q A+ R GVSQVLN LTYAS+ ++ KLAK
Sbjct: 439 KIITDGLKYSLATGNWGDQQKASQCRPGVSQVLNRLTYASSLSHLRRLNSPVGRDGKLAK 498
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PRQLH++QWGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 499 PRQLHSTQWGMVCPAETPEGHAVGLVKNLALMSYISVGSQPSPILEFLEEWSMENLE 555
>gi|409051856|gb|EKM61332.1| hypothetical protein PHACADRAFT_247866 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1237
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 295/545 (54%), Positives = 379/545 (69%), Gaps = 57/545 (10%)
Query: 20 EAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD---- 75
+ W +IS++F++KGLVRQQLDSFDEF QNTMQE+VDE+AD+ + QH G ++D
Sbjct: 39 DCWHIISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHT-GHEADVTRR 97
Query: 76 ----FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR------------ 119
F +IYLS+P +TE+DG +F + ARLRNLTYSAPLYV++ KR
Sbjct: 98 YEIKFGQIYLSRPTVTEADGSVVPIFPQEARLRNLTYSAPLYVEMKKRTLVGREDPDSTT 157
Query: 120 ---VIKKGHDGE----------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIIN 166
V ++ HD +VPIMLRS++C L + +Q+ L +L ECPYD GGYFIIN
Sbjct: 158 GDLVWEQEHDESPEDTRKVWIGKVPIMLRSTFCILNKLTQEELFDLNECPYDSGGYFIIN 217
Query: 167 GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKG 226
GSEKVLIAQE+M+TNHVYVF K QP+ +++AE+ S E + S V + R +
Sbjct: 218 GSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYHRNQER- 276
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
S G + AT+PYI+ +IPI ++FRALG +D DILEHICYD QD QM+E+L+P +++ F
Sbjct: 277 -SLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGF 335
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ+++ +IG RG T G+ RE+ ++YA+EILQKEMLPH+ KAY+FG++I
Sbjct: 336 VIQDREIALDFIGNRGTTTGLNRERRLRYAQEILQKEMLPHI--------HKAYFFGYMI 387
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLLL AL RR DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV+ K+
Sbjct: 388 HRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHKEF 447
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW---- 457
NL A+K TIT GLKYSLATGNWG Q + +AGVSQVLN TYAST ++
Sbjct: 448 NLSLAVKHNTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCNTPL 507
Query: 458 ----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM I++GS + P++EFLEEWG
Sbjct: 508 GREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLEEWG 567
Query: 514 TENFE 518
E+ E
Sbjct: 568 LESLE 572
>gi|328777078|ref|XP_003249277.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2 [Apis mellifera]
Length = 1154
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 309/552 (55%), Positives = 376/552 (68%), Gaps = 58/552 (10%)
Query: 3 MEEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
+EE++ ++++ EE + QE W VI+AYF+EKGLVRQQLDSFDEF + ++Q IV++S
Sbjct: 4 LEEDQYDDEDAEEISSKLWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSP 63
Query: 59 DIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
I+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAP
Sbjct: 64 QIDLQAEAQHTSGEIENPVRHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAP 123
Query: 112 LYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
LYVD+TK ++K G D E +PIMLRS YC L S + LTEL ECP D GG
Sbjct: 124 LYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGG 183
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIINGSEKVLIAQEKM+TN VYVF + KYAY +E+ S E +RP ST+++ M+++
Sbjct: 184 YFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKSEIRSCLEHSSRPTSTLWINMMAK 242
Query: 222 TSA--KGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
+ A K + GQ I A +PYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++
Sbjct: 243 SGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVK 302
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
PSL+EAF IQ Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKA
Sbjct: 303 PSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGIRDFCETKKA 362
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ I NKRLDLAGPLL FR LF+ L +VR Y QK
Sbjct: 363 YFLEFI---------------------NKRLDLAGPLLAFXFRGLFKNLMKEVRLYAQKF 401
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
+D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 402 IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHL 461
Query: 455 L--------SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PIL
Sbjct: 462 RRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 521
Query: 507 EFLEEWGTENFE 518
EFLEEW EN E
Sbjct: 522 EFLEEWSMENLE 533
>gi|393218117|gb|EJD03605.1| DNA-dependent RNA polymerase II second largest subunit [Fomitiporia
mediterranea MF3/22]
Length = 1274
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 286/548 (52%), Positives = 382/548 (69%), Gaps = 49/548 (8%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD- 75
TQE+ W +ISA+F EKGLVRQQLDSFDEF +NT+QEI++E+AD+ + + QH+ G + D
Sbjct: 42 TQEDCWNIISAFFNEKGLVRQQLDSFDEFVKNTIQEIIEENADLILDQQDQHS-GSEKDA 100
Query: 76 -------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVI------- 121
F++I +S P +E+DG T +F + R+RNLTY+AP+Y ++TK+ +
Sbjct: 101 ARRYHIHFSQIIVSNPSFSEADGSTQAIFPQDCRIRNLTYAAPVYCEMTKQTLIGHEDPD 160
Query: 122 --------KKGHDGE----------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
+ H GE +P+MLRS +C L + +++ L + ECPYD GGYF
Sbjct: 161 SMTGEMIWEPEHGGEALEHVKPMIGRIPMMLRSYFCNLRKFNERDLYRVNECPYDSGGYF 220
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS 223
IINGSEKVLIAQE+M+TNHVYVF K QP+ +++AE+ S E + S V M R
Sbjct: 221 IINGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEQGGKTISQFQVKMYHRGQ 280
Query: 224 AKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLE 283
+ +SG + AT+PYI+ +IPI ++FRALG +D DILEHIC+D D+ M+E+L+P ++
Sbjct: 281 ER--ASGSVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICFDMNDSSMLEMLKPCID 338
Query: 284 EAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFG 339
+ F IQ+++ +IG RG G+ R+K ++YA+EILQKEMLPH+ + E+KKAY+FG
Sbjct: 339 DGFVIQDREVALDFIGNRGTATGLNRDKRLRYAQEILQKEMLPHISMAEGSESKKAYFFG 398
Query: 340 HIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNG 399
++IHRLLL AL RR DDRDH+G KRLDLAGPLL GLFR LFRKLT DV Y+QKCV+
Sbjct: 399 YMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLTGLFRMLFRKLTKDVYRYLQKCVETH 458
Query: 400 KDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW- 457
K+ N+ AIK +T+T GLKYSLATGNWG Q A ++AGVSQVLN TYAST ++
Sbjct: 459 KEFNINMAIKTQTLTNGLKYSLATGNWGDQKKAMSSKAGVSQVLNRYTYASTLSHLRRCN 518
Query: 458 -------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLE 510
K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM I++GS + P+++FLE
Sbjct: 519 TPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAVISVGSVSGPVIDFLE 578
Query: 511 EWGTENFE 518
EWG E E
Sbjct: 579 EWGLETLE 586
>gi|307208700|gb|EFN85990.1| DNA-directed RNA polymerase II subunit RPB2 [Harpegnathos saltator]
Length = 1123
Score = 583 bits (1502), Expect = e-163, Method: Compositional matrix adjust.
Identities = 296/502 (58%), Positives = 358/502 (71%), Gaps = 33/502 (6%)
Query: 49 TMQEIVDESADIEIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAA 101
++Q IV++S I+++ E+QH G+ + F +IYLSKP E DG + + A
Sbjct: 2 SVQRIVEDSPQIDLQAEAQHTTGEIENPVRHLLKFEQIYLSKPTHWEKDGAPSPMMPNEA 61
Query: 102 RLRNLTYSAPLYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTE 151
RLRNLTYSAPLYVD+TK ++K G + E +PIMLRS YC L S + LTE
Sbjct: 62 RLRNLTYSAPLYVDITKTIMKDGEEPIETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTE 121
Query: 152 LGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPP 211
L ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + KYAY AE+ S E +RP
Sbjct: 122 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKAEIRSCLEHSSRPT 180
Query: 212 STIFVPMLSRTSA--KGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDF 269
ST+++ M++++ A K + GQ I A +PY++ EIPI+++FRALGF AD DILEHI YDF
Sbjct: 181 STLWINMMAKSGASIKKSAIGQRIVAIIPYVKQEIPIMVVFRALGFVADRDILEHIIYDF 240
Query: 270 QDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVG 325
D +MME+++PSL+EAF IQ Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG
Sbjct: 241 DDPEMMEMVKPSLDEAFVIQEQNVALNFIGTRGARAGVTKEKRIKYAREILQKEMLPHVG 300
Query: 326 TGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLT 385
DFCETKKAY+ G+++HRLL +LGRR DDRDHYGNKRLDLAGPLL LFR LF+ L
Sbjct: 301 ISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRALFKNLM 360
Query: 386 GDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNC 444
+VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLN
Sbjct: 361 KEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNR 420
Query: 445 LTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 496
LT+AST ++ KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI
Sbjct: 421 LTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYI 480
Query: 497 TIGSAAYPILEFLEEWGTENFE 518
++GS PILEFLEEW EN E
Sbjct: 481 SVGSQPSPILEFLEEWSMENLE 502
>gi|164660997|ref|XP_001731621.1| hypothetical protein MGL_0889 [Malassezia globosa CBS 7966]
gi|159105522|gb|EDP44407.1| hypothetical protein MGL_0889 [Malassezia globosa CBS 7966]
Length = 1197
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 292/552 (52%), Positives = 380/552 (68%), Gaps = 50/552 (9%)
Query: 9 EEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH 68
E++ EE +QE+ W VI A+FEEKGLVRQQ+DSF+EF NT+QE+V+ES + + QH
Sbjct: 3 EDEGVEEISQEDCWDVIKAFFEEKGLVRQQIDSFNEFMSNTVQELVEESKSLTLEQSDQH 62
Query: 69 NPGQQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV 120
GQ D F +IY++KP TE+DG TA LF + AR RNLTYSA L+VDV+++V
Sbjct: 63 T-GQAEDKTRRYEIEFGQIYMNKPQQTEADGSTAPLFPQEARQRNLTYSAGLHVDVSQKV 121
Query: 121 IKKGHDGE--------------------------EVPIMLRSSYCTLYQNSQKALTELGE 154
+ KG + E +VPIML S +C L + L E
Sbjct: 122 LVKGEEDELDENGDQLWIPDPTQEEIVDEKVYLGKVPIMLHSHFCWLTDLPDEGKYSLNE 181
Query: 155 CPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTI 214
CP+D GGYFIINGSEKVLIAQE+M+ NHVYVF K P+ ++AE+ S E + ST+
Sbjct: 182 CPFDSGGYFIINGSEKVLIAQERMAANHVYVFSKAPPSPITFLAEIRSAVERGGKTISTM 241
Query: 215 FVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQM 274
V + SR K S I ATLPYIR +IPI+I+FRALG D D+L+HICYDF DTQM
Sbjct: 242 QVKLFSRNREK--SLNNTIKATLPYIRNDIPIVIVFRALGVVPDRDVLQHICYDFNDTQM 299
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EEAF IQ+++ +IG+RG T G++R K YA+EILQKEMLPH+ +
Sbjct: 300 LEMLKPCIEEAFVIQDREVALDFIGRRGTTTGLSRFKRTAYAQEILQKEMLPHISMSEGS 359
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
TKKAY+FG+++HRLLL AL RR DDRDH+G KRLDLAGPLL GLFR LFRK+T D+
Sbjct: 360 NTKKAYFFGYMVHRLLLAALDRREIDDRDHFGKKRLDLAGPLLSGLFRMLFRKVTRDIYR 419
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
++Q+CV++ ++ +LQ A++ TIT GL+YSLATGNWG Q A ++AGVSQVLN T+AS
Sbjct: 420 HLQRCVEDQREFHLQAAVRHATITNGLRYSLATGNWGDQKKAMQSKAGVSQVLNRYTFAS 479
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 480 TLSHLRRCNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSNISVGTP 539
Query: 502 AYPILEFLEEWG 513
+ PI+EFLEE+G
Sbjct: 540 SAPIVEFLEEFG 551
>gi|328859896|gb|EGG09004.1| hypothetical protein MELLADRAFT_47615 [Melampsora larici-populina
98AG31]
Length = 1257
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 292/554 (52%), Positives = 369/554 (66%), Gaps = 46/554 (8%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNP 70
D TQE+ W VISA+F E+ LV QQ+ SFD F TMQE+VDE+ + + Q+
Sbjct: 36 DNSNSITQEDCWQVISAFFNERNLVSQQISSFDGFVNTTMQELVDETGSLILEQSMQYTD 95
Query: 71 GQ-------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR---- 119
+ F +IYLS+P MTESDG + +F ARLRNLTYSAPLYVD++K
Sbjct: 96 KAGDLTKRYEISFGQIYLSRPTMTESDGTVSPMFPNEARLRNLTYSAPLYVDMSKSNKVA 155
Query: 120 ------------VIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPY 157
I D + VPIMLRS +C L + + L +L ECP+
Sbjct: 156 TGEFDEVTGEPIYISDDDDNPDKNSSQIYIGKVPIMLRSEFCILDKLDDRGLYDLNECPF 215
Query: 158 DEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVP 217
D+GGYF+INGSEKVLIAQE+M+ NHVYVF K P+ ++++E+ S E ++ ST+ V
Sbjct: 216 DQGGYFVINGSEKVLIAQERMAANHVYVFAKAAPSPISFLSEIRSAVEKGSKTVSTMQVK 275
Query: 218 MLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMEL 277
M A+ G I TLPYIR +IPI+++FRALG D+DIL+HICYD D M E+
Sbjct: 276 MFGGHKAEKAGGGATIKTTLPYIRNDIPIVVVFRALGIIPDKDILDHICYDRNDIDMFEM 335
Query: 278 LRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETK 333
L+P LE++F IQ Q+ +IG+RG G++REK +KYA+EILQKEMLPH+ + + K
Sbjct: 336 LKPCLEDSFPIQEQEVALDFIGRRGTATGLSREKRLKYAEEILQKEMLPHISMSEGQQGK 395
Query: 334 KAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQ 393
KAY+FG+++HRLLL AL RR DDRDH+G KRLDLAGPLL GLFR LFRKLT DV ++Q
Sbjct: 396 KAYFFGYMVHRLLLAALERRDLDDRDHFGKKRLDLAGPLLAGLFRMLFRKLTKDVYRHLQ 455
Query: 394 KCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFT 452
KCV+ K NL A+K+ TIT GLKYSLATGNWG Q A RAGVSQVLN T+AST +
Sbjct: 456 KCVEMQKPFNLNTAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLS 515
Query: 453 YY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYP 504
+ K+AKPRQLHNS WGM+CPAETPEGQACGLVKNLALM YI++GS + P
Sbjct: 516 HLRRCNTPIGRDGKIAKPRQLHNSHWGMVCPAETPEGQACGLVKNLALMSYISVGSPSAP 575
Query: 505 ILEFLEEWGTENFE 518
I+EFLEEWG E+ +
Sbjct: 576 IVEFLEEWGMESLD 589
>gi|5514652|emb|CAA29180.2| RNA polymerase [Drosophila melanogaster]
Length = 1123
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 299/502 (59%), Positives = 354/502 (70%), Gaps = 33/502 (6%)
Query: 49 TMQEIVDESADIEIRPESQHNPGQ-------QSDFAEIYLSKPMMTESDGETATLFLKAA 101
++Q IV++S IE++ E QH G+ F +IYLSKP E DG + + A
Sbjct: 2 SVQRIVEDSPAIELQAERQHTSGEVETPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEA 61
Query: 102 RLRNLTYSAPLYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTE 151
RLRNLTYSAPLYVD+TK +G D E +PIMLRS+YC L Q + + LTE
Sbjct: 62 RLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTE 121
Query: 152 LGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPP 211
L ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + KYA+ E+ S E +RP
Sbjct: 122 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPT 180
Query: 212 STIFVPMLSRTS--AKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDF 269
ST++V M++R S K + GQ I A LPYI+ EIPI+I+FRALGF AD DILEHI YDF
Sbjct: 181 STLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDF 240
Query: 270 QDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVG 325
D +MME+++PSL+EAF +Q Q +IG RGA GVT++K IKYAKEILQKEMLPHVG
Sbjct: 241 DDPEMMEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVG 300
Query: 326 TGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLT 385
DFCETKKAY+ G+++HRLLL +LGRR DDRDHYGNKRLDLAGPLL LFR LF+ L
Sbjct: 301 VSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLM 360
Query: 386 GDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNC 444
+VR Y QK +D GKD NL+ AIK IT GL+YSLATGNWG Q A RAGVSQVLN
Sbjct: 361 KEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNR 420
Query: 445 LTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 496
LT+AST ++ KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI
Sbjct: 421 LTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYI 480
Query: 497 TIGSAAYPILEFLEEWGTENFE 518
++GS PILEFLEEW EN E
Sbjct: 481 SVGSQPSPILEFLEEWSMENLE 502
>gi|194378878|dbj|BAG57990.1| unnamed protein product [Homo sapiens]
Length = 1099
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 293/468 (62%), Positives = 343/468 (73%), Gaps = 26/468 (5%)
Query: 76 FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE------ 129
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G + +
Sbjct: 13 FEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKT 72
Query: 130 ----VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYV 185
+PIMLRS+YC L + + L EL ECP D GGYFIINGSEKVLIAQEKM+TN VYV
Sbjct: 73 FIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYV 132
Query: 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHATLPYIRTE 243
F K+ +KYAY E S E+ +RP STI+V ML+R AK + GQ I ATLPYI+ E
Sbjct: 133 FAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQE 191
Query: 244 IPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGA 299
+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF IQ Q +IG RGA
Sbjct: 192 VPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGA 251
Query: 300 TVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRD 359
GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++HRLLL ALGRR DDRD
Sbjct: 252 KPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRD 311
Query: 360 HYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKY 419
HYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD NL+ AIK + I+ GLKY
Sbjct: 312 HYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKY 371
Query: 420 SLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQW 470
SLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKPRQLHN+ W
Sbjct: 372 SLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLW 431
Query: 471 GMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 432 GMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 479
>gi|297673507|ref|XP_002814802.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 3
[Pongo abelii]
gi|395851371|ref|XP_003798234.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Otolemur garnettii]
gi|410038419|ref|XP_003950401.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
troglodytes]
Length = 1099
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 293/468 (62%), Positives = 343/468 (73%), Gaps = 26/468 (5%)
Query: 76 FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE------ 129
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G + +
Sbjct: 13 FEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKT 72
Query: 130 ----VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYV 185
+PIMLRS+YC L + + L EL ECP D GGYFIINGSEKVLIAQEKM+TN VYV
Sbjct: 73 FIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYV 132
Query: 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHATLPYIRTE 243
F K+ +KYAY E S E+ +RP STI+V ML+R AK + GQ I ATLPYI+ E
Sbjct: 133 FAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQE 191
Query: 244 IPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGA 299
+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF IQ Q +IG RGA
Sbjct: 192 VPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGA 251
Query: 300 TVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRD 359
GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++HRLLL ALGRR DDRD
Sbjct: 252 KPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRD 311
Query: 360 HYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKY 419
HYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD NL+ AIK + I+ GLKY
Sbjct: 312 HYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKY 371
Query: 420 SLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQW 470
SLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKPRQLHN+ W
Sbjct: 372 SLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLW 431
Query: 471 GMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 432 GMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 479
>gi|443898353|dbj|GAC75688.1| RNA polymerase II, second largest subunit [Pseudozyma antarctica
T-34]
Length = 1240
Score = 576 bits (1484), Expect = e-161, Method: Compositional matrix adjust.
Identities = 289/550 (52%), Positives = 374/550 (68%), Gaps = 49/550 (8%)
Query: 14 EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQ 73
EE TQE+ W VI A+FEEKGLVR QLDSF+EF NT+QE+V+E + + QH+ G
Sbjct: 49 EEITQEDCWDVIRAFFEEKGLVRHQLDSFNEFMSNTIQELVEEVRSLTLEQSDQHS-GHA 107
Query: 74 SD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGH 125
D F +IYL+KP MTESDG +A LF + AR RNLTYSA L+VDVT++V+ +
Sbjct: 108 EDKTRRYEIEFGQIYLNKPTMTESDGSSAQLFPQEARYRNLTYSASLFVDVTQKVLVQSE 167
Query: 126 D-----GE--------------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEG 160
D G+ +VPIML+S +C L + L ECPYD G
Sbjct: 168 DELDLNGDAAWVPEHGKTDVDEQQIFIGKVPIMLKSDFCWLKGLDDEMSYSLNECPYDAG 227
Query: 161 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLS 220
GYF+INGSEKVLIAQE+M+ NHVYVF K P ++AE+ S E + ST+ V + S
Sbjct: 228 GYFVINGSEKVLIAQERMAANHVYVFSKAPPAPVTFLAEIRSAVEKGGKTISTMQVKLFS 287
Query: 221 RTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRP 280
R K ++ I ATLPYIR +IPI+I+FRALG D ++L+HICYDF DT M+E+L+P
Sbjct: 288 RNKEK--TANNTIRATLPYIRNDIPIVIVFRALGIVPDREVLQHICYDFNDTPMLEMLKP 345
Query: 281 SLEEAFFIQNQ----QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAY 336
+EEAF IQ++ +IG+RG T G++R K YA+EILQKEMLPHV T + TKKAY
Sbjct: 346 CIEEAFVIQDRDVALDFIGRRGTTTGLSRAKRTVYAQEILQKEMLPHVSTSEGSNTKKAY 405
Query: 337 YFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
+FG++IHRLLL AL RR DDRDH+G KR+DL GPL+ LFR LFRK+T DV ++QKCV
Sbjct: 406 FFGYMIHRLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRMLFRKVTRDVYRHLQKCV 465
Query: 397 DNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY- 454
+ ++ ++Q A+K+ TIT GL+YSLATGNWG Q A +AGVSQVLN +AST ++
Sbjct: 466 EEHREFHIQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGVSQVLNRFAFASTLSHLR 525
Query: 455 -------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILE 507
K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM +T+G+ + PI+E
Sbjct: 526 RTNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATVTVGTPSAPIVE 585
Query: 508 FLEEWGTENF 517
FLEE+G ++
Sbjct: 586 FLEEFGLDSL 595
>gi|73975081|ref|XP_861044.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 17
[Canis lupus familiaris]
gi|410957579|ref|XP_003985403.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Felis catus]
Length = 1099
Score = 576 bits (1484), Expect = e-161, Method: Compositional matrix adjust.
Identities = 293/468 (62%), Positives = 343/468 (73%), Gaps = 26/468 (5%)
Query: 76 FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE------ 129
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G + +
Sbjct: 13 FEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKT 72
Query: 130 ----VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYV 185
+PIMLRS+YC L + + L EL ECP D GGYFIINGSEKVLIAQEKM+TN VYV
Sbjct: 73 FIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYV 132
Query: 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHATLPYIRTE 243
F K+ +KYAY E S E+ +RP STI+V ML+R AK + GQ I ATLPYI+ E
Sbjct: 133 FAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQE 191
Query: 244 IPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGA 299
+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF IQ Q +IG RGA
Sbjct: 192 VPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGA 251
Query: 300 TVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRD 359
GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++HRLLL ALGRR DDRD
Sbjct: 252 KPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRD 311
Query: 360 HYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKY 419
HYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D GKD NL+ AIK + I+ GLKY
Sbjct: 312 HYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKY 371
Query: 420 SLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQW 470
SLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKPRQLHN+ W
Sbjct: 372 SLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLW 431
Query: 471 GMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 432 GMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 479
>gi|388855609|emb|CCF50832.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2) [Ustilago
hordei]
Length = 1241
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 288/550 (52%), Positives = 374/550 (68%), Gaps = 49/550 (8%)
Query: 14 EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQ 73
EE TQE+ W VI A+FEEKGLVR QLDSF+EF NT+QE+V+E + + QH+ G
Sbjct: 50 EEITQEDCWDVIRAFFEEKGLVRHQLDSFNEFMSNTIQELVEEVRSLTLEQSDQHS-GHA 108
Query: 74 SD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGH 125
D F +IYL+KP MTESDG +A LF + AR RNLTYSA L+VDVT++V+ +
Sbjct: 109 EDKTRRYEIEFGQIYLNKPTMTESDGSSAQLFPQEARFRNLTYSASLFVDVTQKVLVQSE 168
Query: 126 D-----GE--------------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEG 160
D G+ +VPIML+S +C L + L ECPYD G
Sbjct: 169 DEVDLNGDPAWIPEYGKTDVEEEQIFIGKVPIMLKSDFCWLKGLDDEMSYSLNECPYDAG 228
Query: 161 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLS 220
GYF+INGSEKVLIAQE+M+ NHVYVF K P ++AE+ S E + ST+ V + S
Sbjct: 229 GYFVINGSEKVLIAQERMAANHVYVFSKAPPAPVTFLAEIRSAVEKGGKTISTMQVKLFS 288
Query: 221 RTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRP 280
R K ++ I ATLPYIR +IPI+I+FRALG D ++L+HICYDF DT M+E+L+P
Sbjct: 289 RNKEK--TANNTIRATLPYIRNDIPIVIVFRALGIVPDREVLQHICYDFNDTPMLEMLKP 346
Query: 281 SLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAY 336
+EEAF IQ++ +IG+RG T G++R K YA+EILQKEMLPH+ T + TKKAY
Sbjct: 347 CIEEAFVIQDRDVALDFIGRRGTTTGLSRAKRTVYAQEILQKEMLPHISTSEGSNTKKAY 406
Query: 337 YFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
+FG++IHRLLL AL RR DDRDH+G KR+DL GPL+ LFR LFRK+T DV ++QKCV
Sbjct: 407 FFGYMIHRLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRMLFRKVTRDVYRHLQKCV 466
Query: 397 DNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY- 454
+ ++ ++Q A+K+ TIT GL+YSLATGNWG Q A +AGVSQVLN +AST ++
Sbjct: 467 EEHREFHIQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGVSQVLNRFAFASTLSHLR 526
Query: 455 -------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILE 507
K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM +T+G+ + PI+E
Sbjct: 527 RTNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATVTVGTPSAPIVE 586
Query: 508 FLEEWGTENF 517
FLEE+G ++
Sbjct: 587 FLEEFGLDSL 596
>gi|343425328|emb|CBQ68864.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2) [Sporisorium
reilianum SRZ2]
Length = 1242
Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust.
Identities = 286/547 (52%), Positives = 373/547 (68%), Gaps = 49/547 (8%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD- 75
+QE+ W VI A+FEEKGLVR QLDSF+EF NT+QE+V+E + + QH+ G D
Sbjct: 54 SQEDCWDVIRAFFEEKGLVRHQLDSFNEFMSNTIQELVEEVRSLTLEQSDQHS-GHAEDK 112
Query: 76 -------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHD-- 126
F +IYL+KP MTESDG +A LF + AR RNLTYSA L+VDVT++V+ + HD
Sbjct: 113 TRRYEIEFGQIYLNKPTMTESDGSSAQLFPQEARFRNLTYSASLFVDVTQKVLVQSHDEV 172
Query: 127 ---GE--------------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
G+ +VPIML+S +C L + L ECPYD GGYF
Sbjct: 173 DLNGDPAWVPEHGKTDVEEQQIFIGKVPIMLKSDFCWLKGLDDEMSYSLNECPYDAGGYF 232
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS 223
+INGSEKVLIAQE+M+ NHVYVF K P ++AE+ S E + ST+ V + SR
Sbjct: 233 VINGSEKVLIAQERMAANHVYVFSKAPPAPVTFLAEIRSAVEKGGKTISTMQVKLFSRNK 292
Query: 224 AKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLE 283
K ++ I ATLPYIR +IPI+I+FRALG D ++L+HICYDF DT M+E+L+P +E
Sbjct: 293 EK--TANNTIRATLPYIRNDIPIVIVFRALGIVPDREVLQHICYDFNDTPMLEMLKPCIE 350
Query: 284 EAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFG 339
EAF IQ++ +IG+RG T G++R K YA+EILQKEMLPH+ T + TKKAY+FG
Sbjct: 351 EAFVIQDRDVALDFIGRRGTTTGLSRAKRTVYAQEILQKEMLPHISTSEGSNTKKAYFFG 410
Query: 340 HIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNG 399
++IHRLLL AL RR DDRDH+G KR+DL GPL+ LFR LFRK+T DV ++QKCV+
Sbjct: 411 YMIHRLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRMLFRKVTRDVYRHLQKCVEEH 470
Query: 400 KDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY---- 454
++ ++Q A+K+ TIT GL+YSLATGNWG Q A +AGVSQVLN +AST ++
Sbjct: 471 REFHIQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGVSQVLNRFAFASTLSHLRRTN 530
Query: 455 ----LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLE 510
K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM +T+G+ + PI+EFLE
Sbjct: 531 TPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATVTVGTPSAPIVEFLE 590
Query: 511 EWGTENF 517
E+G ++
Sbjct: 591 EFGLDSL 597
>gi|50549809|ref|XP_502376.1| YALI0D03718p [Yarrowia lipolytica]
gi|49648244|emb|CAG80564.1| YALI0D03718p [Yarrowia lipolytica CLIB122]
Length = 1229
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 289/552 (52%), Positives = 379/552 (68%), Gaps = 49/552 (8%)
Query: 12 EEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN-P 70
E+ E T E+ W VIS++F EKGLV QQLDSFDEF + T+QE+V E + + +QH P
Sbjct: 12 EDTEITAEDCWTVISSFFNEKGLVSQQLDSFDEFIETTIQELVWEDRTLILDQPAQHTTP 71
Query: 71 GQQSD------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKG 124
+ F +IYLS+P MTE+DG T ++ + AR RNLTYS+PLYVD+ KRV+
Sbjct: 72 NDNQNKRFEITFGKIYLSRPTMTEADGSTHPMYPQEARARNLTYSSPLYVDMKKRVLFSI 131
Query: 125 HD--------------GE-----------EVPIMLRSSYCTLYQNSQKALTELGECPYDE 159
D GE +VPIMLRS +C L + L EL ECPYD+
Sbjct: 132 DDPARPEADVVWNPIPGEVEEPVSKVYIGKVPIMLRSKFCILRGLRENDLYELNECPYDQ 191
Query: 160 GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPML 219
GGYF+INGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R S++ + M
Sbjct: 192 GGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAVEKGSRLISSMQIKMF 251
Query: 220 SRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
R S KG + I A LPY+R +IPI+++FRALG D DILEHICYD D QM+E+L+
Sbjct: 252 GR-SDKGPVT---IKAALPYVRADIPIVVVFRALGVVPDGDILEHICYDNNDWQMLEMLK 307
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
P +EEAF IQ+++ YIG+RG+ VGV RE+ ++YA++ILQKE+LPH+ + ET+KA
Sbjct: 308 PCIEEAFVIQDREVALDYIGRRGSAVGVNRERRVRYARDILQKELLPHITQEEGFETRKA 367
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ G+++HR+LL ALGR+ DDRDH+G KRLDLAGPL+ G+FR LF+KLT D+ Y+ KC
Sbjct: 368 YFLGYMVHRMLLVALGRKEPDDRDHFGKKRLDLAGPLMAGIFRMLFKKLTKDIYRYMLKC 427
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
V+ KD NL A+K+ TIT GLKYSLATGNWG Q A +RAGVSQVLN T+AST ++
Sbjct: 428 VETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYTFASTLSHL 487
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ ++PI+
Sbjct: 488 RRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSFPII 547
Query: 507 EFLEEWGTENFE 518
FL+EWG E E
Sbjct: 548 NFLDEWGMEPLE 559
>gi|390337473|ref|XP_003724570.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Strongylocentrotus purpuratus]
Length = 1142
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 302/543 (55%), Positives = 368/543 (67%), Gaps = 55/543 (10%)
Query: 4 EEERLEEDEEEETT----QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESAD 59
+EE E+E ++ T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV++S
Sbjct: 5 DEEVYGEEETDDLTPDQWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPA 64
Query: 60 IEIRPESQHNPGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPL 112
++++ E+QH +Q F +IYLSKP E DG + + ARLRNLTYSAPL
Sbjct: 65 VDLQAEAQHMTTEQEVPTRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPL 124
Query: 113 YVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGY 162
YVD+TK VIK G D +E +PIMLRS+YC L + + LTEL ECP D GGY
Sbjct: 125 YVDITKTVIKDGEDPQETIHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGY 184
Query: 163 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR- 221
FIINGSEKVLIAQEKMSTN VYVF K+ +KYA+ AE S E +RP ST++V M+++
Sbjct: 185 FIINGSEKVLIAQEKMSTNSVYVFAKKD-SKYAFTAECRSCLEHSSRPTSTLWVHMMAKG 243
Query: 222 -TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRP 280
A+ + GQ + + LPYIR E+PI+++FRALGF AD DILEHI YDF D +MME+++P
Sbjct: 244 GQGARKSAIGQRMISVLPYIRQEVPIMVVFRALGFVADRDILEHIIYDFDDPEMMEMVKP 303
Query: 281 SLEEAFFIQNQ----QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAY 336
SL+EAF IQ Q +IG RGA GVT+E+ IKYA+EILQKEMLPHVG DFCETKKAY
Sbjct: 304 SLDEAFVIQEQSVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAY 363
Query: 337 YFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
+ G+ +HRLLL ++GRR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +
Sbjct: 364 FLGYCVHRLLLASIGRREVDDRDHYGNKRLDLAGPLLAFLFRALFKNLLKEVRMYAQKFI 423
Query: 397 DNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL 455
D GKD N++ AIK + IT GLKYSLATGNWG Q A RAGVSQV + L S YY
Sbjct: 424 DKGKDFNMELAIKTRIITDGLKYSLATGNWGDQKKAHQARAGVSQVRHIL--HSFIVYY- 480
Query: 456 SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
+G A GLVKNLALM YI++GS PILEFLEEW E
Sbjct: 481 -----------------------HKGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 517
Query: 516 NFE 518
N E
Sbjct: 518 NLE 520
>gi|294659491|ref|XP_002770594.1| DEHA2G07502p [Debaryomyces hansenii CBS767]
gi|199434003|emb|CAR65929.1| DEHA2G07502p [Debaryomyces hansenii CBS767]
Length = 1232
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 288/560 (51%), Positives = 384/560 (68%), Gaps = 47/560 (8%)
Query: 3 MEEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI 62
+E+ L +D+ E T E W VIS++F+EKGLV QQLDSFDEF + T+QE+V E + + +
Sbjct: 7 VEDPYLYDDDSESITPENCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLIL 66
Query: 63 RPESQH-------NPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVD 115
+QH N + F +IY+SKP TE DG T +F + ARLRNLTYS+PLYVD
Sbjct: 67 DQPAQHTSEDDHENRRYEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVD 126
Query: 116 VTKRVIKKGHDGE------------------------EVPIMLRSSYCTLYQNSQKALTE 151
+TK+V+K + +VPIMLRS +C L + E
Sbjct: 127 MTKKVLKSDDNNRVDNELEWVEEKIEDEGPQTKVYLGKVPIMLRSKFCMLRGLGEHEFYE 186
Query: 152 LGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPP 211
L ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK P+ +++AE+ S E +R
Sbjct: 187 LKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHIAEIRSAIEKGSRLI 246
Query: 212 STIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQD 271
S++ + + R G+SG+ I ATLPYI+ +IPI+I+FRALG D DILEHICYD D
Sbjct: 247 SSMQIKLYGRDDK--GTSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDAND 304
Query: 272 TQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTG 327
QM+E+L+P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++
Sbjct: 305 WQMLEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQE 363
Query: 328 DFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGD 387
+ ET+KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D
Sbjct: 364 EGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKD 423
Query: 388 VRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLT 446
+ +Y+Q+CV+N K+ NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN T
Sbjct: 424 IYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYT 483
Query: 447 YASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITI 498
Y+ST ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++
Sbjct: 484 YSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISV 543
Query: 499 GSAAYPILEFLEEWGTENFE 518
G+++ PIL FLEEWG E E
Sbjct: 544 GTSSEPILYFLEEWGMEPLE 563
>gi|448117721|ref|XP_004203325.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
gi|359384193|emb|CCE78897.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
Length = 1233
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 290/560 (51%), Positives = 382/560 (68%), Gaps = 47/560 (8%)
Query: 3 MEEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI 62
+E+ L +D+ E T E+ W VIS++F+EKGLV QQLDSFDEF + T+QE+V E + + +
Sbjct: 7 LEDPYLYDDDSESITPEDCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLIL 66
Query: 63 RPESQH-------NPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVD 115
+QH N + F +IY+SKP TE DG T +F + ARLRNLTYS+PLYVD
Sbjct: 67 DQPAQHTSEDDHENRRYEIAFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVD 126
Query: 116 VTKRVIKKGHDGEE------------------------VPIMLRSSYCTLYQNSQKALTE 151
+TKRV K + + VPIMLRS +C L + E
Sbjct: 127 MTKRVFKSDDNNRKDNELEWIEESVENEEPQTKVYLGKVPIMLRSKFCMLRGLGEHEFYE 186
Query: 152 LGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPP 211
L ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R
Sbjct: 187 LKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALEKGSRLI 246
Query: 212 STIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQD 271
S++ + + R G+SG+ I ATLPYI+ +IPI+I+FRALG D DILEHICYD D
Sbjct: 247 SSMQIKLYGRDDK--GTSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDAND 304
Query: 272 TQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTG 327
QM+E+L+P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++
Sbjct: 305 WQMLEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQE 363
Query: 328 DFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGD 387
+ ET+KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKLT D
Sbjct: 364 EGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKD 423
Query: 388 VRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLT 446
+ +Y+Q+CV+N K+ N A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN T
Sbjct: 424 IYNYMQRCVENDKEFNSTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYT 483
Query: 447 YASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITI 498
Y+ST ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++
Sbjct: 484 YSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISV 543
Query: 499 GSAAYPILEFLEEWGTENFE 518
G+ + PIL FLEEWG E E
Sbjct: 544 GTPSEPILYFLEEWGMEPLE 563
>gi|448120161|ref|XP_004203908.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
gi|359384776|emb|CCE78311.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
Length = 1233
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 290/560 (51%), Positives = 382/560 (68%), Gaps = 47/560 (8%)
Query: 3 MEEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI 62
+E+ L +D+ E T E+ W VIS++F+EKGLV QQLDSFDEF + T+QE+V E + + +
Sbjct: 7 LEDPYLYDDDSESITPEDCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLIL 66
Query: 63 RPESQH-------NPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVD 115
+QH N + F +IY+SKP TE DG T +F + ARLRNLTYS+PLYVD
Sbjct: 67 DQPAQHTSEDDHENRRYEIAFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVD 126
Query: 116 VTKRVIKKGHDGEE------------------------VPIMLRSSYCTLYQNSQKALTE 151
+TKRV K + + VPIMLRS +C L + E
Sbjct: 127 MTKRVFKSDDNNRKDNELEWIEESVENEEPQTKVYLGKVPIMLRSKFCMLRGLGEHEFYE 186
Query: 152 LGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPP 211
L ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R
Sbjct: 187 LKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALEKGSRLI 246
Query: 212 STIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQD 271
S++ + + R G+SG+ I ATLPYI+ +IPI+I+FRALG D DILEHICYD D
Sbjct: 247 SSMQIKLYGRDDK--GTSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDAND 304
Query: 272 TQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTG 327
QM+E+L+P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++
Sbjct: 305 WQMLEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQE 363
Query: 328 DFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGD 387
+ ET+KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKLT D
Sbjct: 364 EGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKD 423
Query: 388 VRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLT 446
+ +Y+Q+CV+N K+ N A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN T
Sbjct: 424 IYNYMQRCVENDKEFNSTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYT 483
Query: 447 YASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITI 498
Y+ST ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++
Sbjct: 484 YSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISV 543
Query: 499 GSAAYPILEFLEEWGTENFE 518
G+ + PIL FLEEWG E E
Sbjct: 544 GTPSEPILYFLEEWGMEPLE 563
>gi|344234576|gb|EGV66444.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Candida tenuis ATCC 10573]
Length = 1233
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 291/558 (52%), Positives = 383/558 (68%), Gaps = 47/558 (8%)
Query: 5 EERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRP 64
E++ D++ T E+ W VIS++F+EKGLV QQLDSFDEF + T+QE+V E + + +
Sbjct: 8 EDQYAYDDDHSITPEDCWLVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLVLDQ 67
Query: 65 ESQH-------NPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT 117
+QH N + F +IY+SKP TE DG T +F + ARLRNLTYS+PLYVD+T
Sbjct: 68 PAQHTSEDDFENRRYEISFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMT 127
Query: 118 KRVIKKGHD---------------GE---------EVPIMLRSSYCTLYQNSQKALTELG 153
KRV K + GE +VPIMLRS +C L ++ EL
Sbjct: 128 KRVFKSDDNDRKNNELEWIEEHVEGEGTDTKVYLGKVPIMLRSKFCMLRDLAEHEFYELK 187
Query: 154 ECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPST 213
ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R S+
Sbjct: 188 ECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAGPSPISHVAEIRSALEKGSRLISS 247
Query: 214 IFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQ 273
+ + + R +SG+ I ATLPYI+ +IPI+I+FRALG D DILEHICYD D Q
Sbjct: 248 LQIKLYGRDDR--AASGRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQ 305
Query: 274 MMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDF 329
M+E+L+P +EE F IQ Q+ +IG+RG +G+ REK I+YAK+ILQKE+LP++ +
Sbjct: 306 MLEMLKPCVEEGFVIQEQEVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEG 364
Query: 330 CETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVR 389
T+KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKLT D+
Sbjct: 365 FATRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTRDIY 424
Query: 390 SYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYA 448
+Y+Q+CV+N K+ NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+
Sbjct: 425 NYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYS 484
Query: 449 STFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGS 500
ST ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 485 STLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGT 544
Query: 501 AAYPILEFLEEWGTENFE 518
++ PIL FLEEWG E E
Sbjct: 545 SSEPILVFLEEWGLEPLE 562
>gi|402294653|gb|AFQ55280.1| DNA-directed RNA polymerase II [Peltigera malacea]
Length = 1255
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 286/582 (49%), Positives = 380/582 (65%), Gaps = 70/582 (12%)
Query: 4 EEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR 63
++ L+EDEE T E+ W VIS++F+ KGLV QQLDSFDEF TMQE+V E++ + +
Sbjct: 8 DDSYLDEDEEATITAEDCWTVISSFFDSKGLVSQQLDSFDEFVSTTMQELVAENSVLTL- 66
Query: 64 PESQHNPGQQSD-----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPL 112
Q+ P SD F + LS+P MTE DG T+T+ + ARLRNLTYS+PL
Sbjct: 67 --DQNAPPSDSDDPILIRRYEIKFGTVLLSRPAMTEGDGSTSTMLPQEARLRNLTYSSPL 124
Query: 113 YVDVTKRV-----------------------------------IKKGHDGEE-------- 129
Y+++TK+V I+ G D ++
Sbjct: 125 YLEMTKKVSIARERVVFENADEDPNPDSDAQKRFGADANLDWVIEDGDDDQDPSKVFVGK 184
Query: 130 VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
+PIML+S YC L + L ECPYD+GGYF+INGSEKVLIAQE+ + N V VFKK
Sbjct: 185 LPIMLKSKYCILKDLGEAELYNWNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKA 244
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
P+ YVAE+ S E +R S++ + + ++ G GQ + ATLPY++T++PI I+
Sbjct: 245 PPSATPYVAEIRSAVEKGSRLISSMQIKLFAKGENHKGGFGQTVKATLPYVKTDVPIGIV 304
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
FRALG +DEDIL HICYD DTQM+E L+P +EEAF IQ+++ +IG RG + ++R
Sbjct: 305 FRALGIVSDEDILNHICYDRNDTQMLEKLKPCIEEAFVIQDREVALDWIGSRGNSQSLSR 364
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
K +KYA++I+QKE+LPH+ D ETKKA++ G+++HR+L CALGRR DDRDH+G KR
Sbjct: 365 PKRVKYARDIMQKELLPHISQTDGSETKKAFFLGYMVHRMLQCALGRREVDDRDHFGKKR 424
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGN 425
LDLAGPLL GLFR LF KLT DV Y+QKCV+N ++ NL +K+ T+T GLKYSLATGN
Sbjct: 425 LDLAGPLLAGLFRMLFNKLTKDVFKYLQKCVENNREFNLTLGVKSTTLTNGLKYSLATGN 484
Query: 426 WG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPA 476
WG Q AA ++AGVSQVLN T+AST ++ K+AKPRQLHN+ WG++CPA
Sbjct: 485 WGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPA 544
Query: 477 ETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
ETPEGQACGLVKNLALM YIT+G+ PI++F+ + E E
Sbjct: 545 ETPEGQACGLVKNLALMCYITVGTPCEPIIDFMNQRNMEMLE 586
>gi|358054058|dbj|GAA99857.1| hypothetical protein E5Q_06560 [Mixia osmundae IAM 14324]
Length = 1327
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 286/556 (51%), Positives = 373/556 (67%), Gaps = 56/556 (10%)
Query: 19 EEAWAVISAYFEE------KGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ 72
++ W + YF K LV QQ+DSF++F N+MQEIVDE++ + + E Q
Sbjct: 86 DDPWTMTDNYFSSGPKKQIKSLVSQQIDSFNDFLNNSMQEIVDENSKLVLDQELQFQGTA 145
Query: 73 QS------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHD 126
+ +F ++YLS+P TE+DG A LF + ARLRNLTYS+PLYVDV+ V D
Sbjct: 146 EKLRRYEINFGQVYLSQPTQTEADGSVAALFPQEARLRNLTYSSPLYVDVSMTVKVPHPD 205
Query: 127 GE-----------------------------EVPIMLRSSYCTLYQNSQKALTELGECPY 157
GE +VP+M++S +C L + + AL ECP
Sbjct: 206 GELDENGEIEWITEEDEAGMQQISQHREYLGKVPMMIKSRFCHLLKMEEDALFNADECPL 265
Query: 158 DEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVP 217
D+GGYFIINGSEKVLIAQE+M+ N VYVF K P+ AY+AE+ S+ ES ++ PS++ V
Sbjct: 266 DKGGYFIINGSEKVLIAQERMAGNTVYVFGKAPPSPIAYLAEIRSVVESGSQTPSSLTVK 325
Query: 218 MLSRTSAK--GGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMM 275
M+ + GG++G I TLPYIR +IPI+++FRALG D+DIL+HICYD DT M
Sbjct: 326 MMRAGNPDKVGGATGSVIRVTLPYIRADIPILVVFRALGIIPDKDILQHICYDPNDTDMY 385
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
ELL+PSLEEAF +Q+Q +IG+RG G+TR+K I+YA+++LQKE+LPHV T
Sbjct: 386 ELLKPSLEEAFPVQDQNVALDFIGRRGTAAGLTRDKRIQYARDVLQKEVLPHVSTSAGSH 445
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
KKAY+FG++IHRLL+ A+ RR DDRDH+G KRLDLAGPL+ LFRTLF+K+ DV Y
Sbjct: 446 QKKAYFFGYMIHRLLMAAMQRRDLDDRDHFGKKRLDLAGPLVASLFRTLFKKMIKDVYRY 505
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAST 450
+QKCVD K+ + AI+A TIT GLKYSLATGNWG Q AA RAGVSQVLN T+AST
Sbjct: 506 LQKCVDTQKEFKMNNAIRASTITNGLKYSLATGNWGEQKKAAAARAGVSQVLNRYTFAST 565
Query: 451 FTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAA 502
++ K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM YIT+G+A
Sbjct: 566 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYITVGTAI 625
Query: 503 YPILEFLEEWGTENFE 518
PI++FL++WG+ + E
Sbjct: 626 RPIIDFLQDWGSVSLE 641
>gi|150951109|ref|XP_001387366.2| DNA-dependent RNA polymerase II [Scheffersomyces stipitis CBS 6054]
gi|149388327|gb|EAZ63343.2| DNA-dependent RNA polymerase II [Scheffersomyces stipitis CBS 6054]
Length = 1232
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 289/554 (52%), Positives = 383/554 (69%), Gaps = 47/554 (8%)
Query: 9 EEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH 68
++ + + T E+ W VIS++F+EKGLV QQLDSFDEF + T+QE+V E + + + +QH
Sbjct: 11 DDGDAQSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQH 70
Query: 69 -------NPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVI 121
N + F +IY+SKPM TE DG T +F + ARLRNLTYS+PLYVD+TK+V
Sbjct: 71 TSEDDHENRRYEITFGKIYISKPMQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKKVF 130
Query: 122 K----------------KGHDGE--------EVPIMLRSSYCTLYQNSQKALTELGECPY 157
K K D E +VPIMLRS +C L + EL ECPY
Sbjct: 131 KSDDNRRKENELEWVEEKVEDEEPQQKVFLGKVPIMLRSKFCMLRDLGEHEFFELKECPY 190
Query: 158 DEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVP 217
D GGYF+INGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R S++ +
Sbjct: 191 DMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALEKGSRLISSMQIK 250
Query: 218 MLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMEL 277
+ R + G+SG+ I ATLPYI+ +IPI+I+FRALG D DILEHICYD D QM+E+
Sbjct: 251 LYGRD--EKGTSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEM 308
Query: 278 LRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETK 333
L+P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ + E++
Sbjct: 309 LKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFESR 367
Query: 334 KAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQ 393
KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKLT D+ +Y+Q
Sbjct: 368 KAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYNYMQ 427
Query: 394 KCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFT 452
+CV+N K+ NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST +
Sbjct: 428 RCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLS 487
Query: 453 YY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYP 504
+ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ + P
Sbjct: 488 HLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEP 547
Query: 505 ILEFLEEWGTENFE 518
IL FLEEWG E E
Sbjct: 548 ILYFLEEWGMEPLE 561
>gi|402294651|gb|AFQ55279.1| DNA-directed RNA polymerase II [Peltigera membranacea]
Length = 1255
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 284/582 (48%), Positives = 378/582 (64%), Gaps = 70/582 (12%)
Query: 4 EEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR 63
++ L+EDEE T E+ W VIS++F+ KGLV QQLDSFDEF TMQE+V E+A + +
Sbjct: 8 DDSYLDEDEEATITAEDCWTVISSFFDSKGLVSQQLDSFDEFVSTTMQELVAENAILTL- 66
Query: 64 PESQHNPGQQSD-----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPL 112
Q+ P SD F + LS+P MTE DG T+ + + ARLRNLTYS+PL
Sbjct: 67 --DQNAPPSDSDDPVLIRRYEIKFGTVLLSRPAMTEGDGSTSAMLPQEARLRNLTYSSPL 124
Query: 113 YVDVTKRV-----------------------------------IKKGHDGEE-------- 129
Y+++TK+V I+ G D ++
Sbjct: 125 YLEMTKKVSVARERVAVENADEDPNPDSDTQKRFGADANLDWVIEDGEDDQDPSKVFVGK 184
Query: 130 VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
+PIML+S YC L + L ECPYD+GGYF+INGSEKVLIAQE+ + N V VFKK
Sbjct: 185 LPIMLKSKYCILKDLGETELYNWNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKA 244
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
P+ Y+AE+ S E +R S++ + + ++ G GQ + ATLPY++T++PI I+
Sbjct: 245 PPSATPYIAEIRSAVEKGSRLISSMQIKLFAKGENHKGGFGQTVKATLPYVKTDVPIGIV 304
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
FR LG +DEDIL HICYD DTQM+E L+P +EEAF IQ+++ +IG RG + ++R
Sbjct: 305 FRGLGIVSDEDILNHICYDRNDTQMLEKLKPCIEEAFVIQDREVALDWIGSRGNSQSLSR 364
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
K +KYA++I+QKE+LPH+ D ETKKA++ G+++HR+L CALGRR DDRDH+G KR
Sbjct: 365 PKRVKYARDIMQKELLPHISQTDGSETKKAFFLGYMVHRMLQCALGRREVDDRDHFGKKR 424
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGN 425
LDLAGPLL GLFR LF KLT DV Y+QKCV+N ++ NL +K+ T+T GLKYSLATGN
Sbjct: 425 LDLAGPLLAGLFRMLFNKLTKDVFKYLQKCVENNREFNLTLGVKSTTLTNGLKYSLATGN 484
Query: 426 WG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPA 476
WG Q AA ++AGVSQVLN T+AST ++ K+AKPRQLHN+ WG++CPA
Sbjct: 485 WGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPA 544
Query: 477 ETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
ETPEGQACGLVKNLALM YIT+G+ PI++F+ + E E
Sbjct: 545 ETPEGQACGLVKNLALMCYITVGTPCEPIIDFMNQRNMEMLE 586
>gi|223590257|sp|A5DHT2.3|RPB2_PICGU RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2
Length = 1236
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 287/553 (51%), Positives = 380/553 (68%), Gaps = 47/553 (8%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
+D+ T E+ W VIS++F+EKGLV QQLDSFDEF ++T+QE+V E + + + +QH
Sbjct: 12 DDDSSSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHT 71
Query: 70 PGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
+ + F +IY+SKP TE DG T +F + ARLRNLTYS+PLYVD+TKRV+K
Sbjct: 72 SEEDHENRRYEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLK 131
Query: 123 KGHDG---------------EE---------VPIMLRSSYCTLYQNSQKALTELGECPYD 158
+ EE VPIMLRS +C L + EL ECPYD
Sbjct: 132 SDDNAGNEHELEWIEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYD 191
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GGYF+INGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R S++ + +
Sbjct: 192 MGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERGSRLISSMQIKL 251
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
R + +S + I ATLPYI+ +IPI+I+FRALG D DILEHICYD D QM+E+L
Sbjct: 252 YGR--EEKSTSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEML 309
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
+P +EE F IQ ++ +IG+RGA +G+ REK I+YAK+ILQKE+LP++ + ET+K
Sbjct: 310 KPCVEEGFVIQEREVALDFIGRRGA-LGIKREKRIQYAKDILQKELLPNITQDEGFETRK 368
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
A++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +Y+Q+
Sbjct: 369 AFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQR 428
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTY 453
CV+N K NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 429 CVENDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 488
Query: 454 Y--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ + PI
Sbjct: 489 LRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPI 548
Query: 506 LEFLEEWGTENFE 518
L FLEEWG E E
Sbjct: 549 LYFLEEWGMEPLE 561
>gi|190346609|gb|EDK38735.2| hypothetical protein PGUG_02833 [Meyerozyma guilliermondii ATCC
6260]
Length = 1291
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 287/553 (51%), Positives = 380/553 (68%), Gaps = 47/553 (8%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
+D+ T E+ W VIS++F+EKGLV QQLDSFDEF ++T+QE+V E + + + +QH
Sbjct: 67 DDDSSSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHT 126
Query: 70 PGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
+ + F +IY+SKP TE DG T +F + ARLRNLTYS+PLYVD+TKRV+K
Sbjct: 127 SEEDHENRRYEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLK 186
Query: 123 KGHDG---------------EE---------VPIMLRSSYCTLYQNSQKALTELGECPYD 158
+ EE VPIMLRS +C L + EL ECPYD
Sbjct: 187 SDDNAGNEHELEWIEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYD 246
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GGYF+INGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R S++ + +
Sbjct: 247 MGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERGSRLISSMQIKL 306
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
R + +S + I ATLPYI+ +IPI+I+FRALG D DILEHICYD D QM+E+L
Sbjct: 307 YGR--EEKSTSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEML 364
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
+P +EE F IQ ++ +IG+RGA +G+ REK I+YAK+ILQKE+LP++ + ET+K
Sbjct: 365 KPCVEEGFVIQEREVALDFIGRRGA-LGIKREKRIQYAKDILQKELLPNITQDEGFETRK 423
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
A++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +Y+Q+
Sbjct: 424 AFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQR 483
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTY 453
CV+N K NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 484 CVENDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 543
Query: 454 Y--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ + PI
Sbjct: 544 LRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPI 603
Query: 506 LEFLEEWGTENFE 518
L FLEEWG E E
Sbjct: 604 LYFLEEWGMEPLE 616
>gi|303390954|ref|XP_003073707.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
intestinalis ATCC 50506]
gi|303302855|gb|ADM12347.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
intestinalis ATCC 50506]
Length = 1140
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 279/532 (52%), Positives = 373/532 (70%), Gaps = 41/532 (7%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD- 75
T+E +W +IS++FE+KGLVRQQLDSFD+F + MQE++DES I + +S G ++
Sbjct: 6 TKEHSWLIISSFFEQKGLVRQQLDSFDQFVKTKMQEVIDESPAIIV--QSAPTAGIETQK 63
Query: 76 -----FAEIYLSKP-MMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKK-----G 124
F +IY+SKP + TESDG T T+F AR+R+LTY++PL++DVTK I +
Sbjct: 64 RITVRFGQIYVSKPPIYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETISELGVVDK 123
Query: 125 HDGEEVP-----IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMS 179
H VP +MLRSSYC LY S K L +LGECPYD+GGYFI+NGSEKV++AQE+M+
Sbjct: 124 HKYSRVPFGSLPVMLRSSYCVLYGLSDKDLIDLGECPYDQGGYFIVNGSEKVIVAQERMA 183
Query: 180 TNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPY 239
+N VYVFKK QP Y + AE+ S+ E +R PST+ S K S I +LP
Sbjct: 184 SNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTL--------SMKLCRSPGVIRVSLPL 235
Query: 240 IRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIG 295
++ +IP+ +L+RALGF +D++I++HI Y+ D +M ELL+ S+EE +Q+Q YIG
Sbjct: 236 VKQDIPLFVLYRALGFLSDKEIIDHILYE-DDDEMFELLKESIEEGMVVQDQNVALDYIG 294
Query: 296 KRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
KR A VG +EK I AK++L KE+LPH+GT +FCETKKAY+ G+I+ RLLL ALGR+
Sbjct: 295 KRSAPVGTPQEKRIIIAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRKNP 354
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITG 415
DDRDHYG KR+DL+GPLL LFRTLF+KL D ++QKC++NG++ N+ +KA IT
Sbjct: 355 DDRDHYGKKRMDLSGPLLASLFRTLFKKLCADTTRHMQKCIENGREFNIALGLKASIITQ 414
Query: 416 GLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLH 466
G +Y+LATGNWG Q A TRAGV+QVLN + ST ++ KLA PRQLH
Sbjct: 415 GFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAPRQLH 474
Query: 467 NSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
N+ WGM+CPAETPEGQACGLVKNL+LM YI++GS++ P++EFLEE G E+ E
Sbjct: 475 NTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLEECGVESLE 526
>gi|146418277|ref|XP_001485104.1| hypothetical protein PGUG_02833 [Meyerozyma guilliermondii ATCC
6260]
Length = 1291
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 287/553 (51%), Positives = 380/553 (68%), Gaps = 47/553 (8%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
+D+ T E+ W VIS++F+EKGLV QQLDSFDEF ++T+QE+V E + + + +QH
Sbjct: 67 DDDSLSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHT 126
Query: 70 PGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
+ + F +IY+SKP TE DG T +F + ARLRNLTYS+PLYVD+TKRV+K
Sbjct: 127 SEEDHENRRYEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLK 186
Query: 123 KGHDG---------------EE---------VPIMLRSSYCTLYQNSQKALTELGECPYD 158
+ EE VPIMLRS +C L + EL ECPYD
Sbjct: 187 SDDNAGNEHELEWIEEEIKDEEPLTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYD 246
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GGYF+INGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R S++ + +
Sbjct: 247 MGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERGSRLISSMQIKL 306
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
R + +S + I ATLPYI+ +IPI+I+FRALG D DILEHICYD D QM+E+L
Sbjct: 307 YGR--EEKSTSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEML 364
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
+P +EE F IQ ++ +IG+RGA +G+ REK I+YAK+ILQKE+LP++ + ET+K
Sbjct: 365 KPCVEEGFVIQEREVALDFIGRRGA-LGIKREKRIQYAKDILQKELLPNITQDEGFETRK 423
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
A++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +Y+Q+
Sbjct: 424 AFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQR 483
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTY 453
CV+N K NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 484 CVENDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 543
Query: 454 Y--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ + PI
Sbjct: 544 LRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPI 603
Query: 506 LEFLEEWGTENFE 518
L FLEEWG E E
Sbjct: 604 LYFLEEWGMEPLE 616
>gi|344304446|gb|EGW34678.1| DNA-dependent RNA polymerase II [Spathaspora passalidarum NRRL
Y-27907]
Length = 1238
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 284/555 (51%), Positives = 379/555 (68%), Gaps = 48/555 (8%)
Query: 9 EEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH 68
++ + + T E+ W VIS++F+EKGLV QQLDSFDEF + T+QE+V E + + + +QH
Sbjct: 19 DDGDSQSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQH 78
Query: 69 -------NPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVI 121
N + F +IY+SKP TE DG T +F + ARLRNLTYS+PLYVD+TK+V
Sbjct: 79 TSESDHENRRYEITFGKIYISKPSQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKKVF 138
Query: 122 KKGHDGEE-------------------------VPIMLRSSYCTLYQNSQKALTELGECP 156
K + + VPIMLRS +C L + EL ECP
Sbjct: 139 KSDDNKRKENNELDWIEEKVEDEDPRTKVYLGKVPIMLRSKFCMLRDLGEHDFYELKECP 198
Query: 157 YDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV 216
YD GGYF+INGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R S++ +
Sbjct: 199 YDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQI 258
Query: 217 PMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMME 276
+ R + G S + I ATLPYI+ +IPI+I+FRALG D DILEHICYD D QM+E
Sbjct: 259 KLYGRD--EKGVSARTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLE 316
Query: 277 LLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET 332
+L+P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ + ET
Sbjct: 317 MLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFET 375
Query: 333 KKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYV 392
+KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +Y+
Sbjct: 376 RKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYM 435
Query: 393 QKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTF 451
Q+CV+N K+ NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST
Sbjct: 436 QRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTL 495
Query: 452 TYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAY 503
++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ +
Sbjct: 496 SHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSE 555
Query: 504 PILEFLEEWGTENFE 518
PIL FLEEWG E+ E
Sbjct: 556 PILYFLEEWGMESLE 570
>gi|402869721|ref|XP_003898896.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Papio anubis]
Length = 1083
Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust.
Identities = 284/445 (63%), Positives = 331/445 (74%), Gaps = 26/445 (5%)
Query: 99 KAARLRNLTYSAPLYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKA 148
K ARLRNLTYSAPLYVD+TK VIK+G + + +PIMLRS+YC L + +
Sbjct: 20 KHARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRD 79
Query: 149 LTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQN 208
L EL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +
Sbjct: 80 LCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSS 138
Query: 209 RPPSTIFVPMLSR--TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHIC 266
RP STI+V ML+R AK + GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI
Sbjct: 139 RPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHII 198
Query: 267 YDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLP 322
YDF+D +MME+++PSL+EAF IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLP
Sbjct: 199 YDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLP 258
Query: 323 HVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFR 382
HVG DFCETKKAY+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+
Sbjct: 259 HVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFK 318
Query: 383 KLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQV 441
L +VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQV
Sbjct: 319 NLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQV 378
Query: 442 LNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 493
LN LT+AST ++ KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM
Sbjct: 379 LNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALM 438
Query: 494 VYITIGSAAYPILEFLEEWGTENFE 518
YI++GS PILEFLEEW EN E
Sbjct: 439 AYISVGSQPSPILEFLEEWSMENLE 463
>gi|194386684|dbj|BAG61152.1| unnamed protein product [Homo sapiens]
Length = 1083
Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust.
Identities = 284/445 (63%), Positives = 331/445 (74%), Gaps = 26/445 (5%)
Query: 99 KAARLRNLTYSAPLYVDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKA 148
K ARLRNLTYSAPLYVD+TK VIK+G + + +PIMLRS+YC L + +
Sbjct: 20 KHARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRD 79
Query: 149 LTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQN 208
L EL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +
Sbjct: 80 LCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSS 138
Query: 209 RPPSTIFVPMLSR--TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHIC 266
RP STI+V ML+R AK + GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI
Sbjct: 139 RPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHII 198
Query: 267 YDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLP 322
YDF+D +MME+++PSL+EAF IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLP
Sbjct: 199 YDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLP 258
Query: 323 HVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFR 382
HVG DFCETKKAY+ G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+
Sbjct: 259 HVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFK 318
Query: 383 KLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQV 441
L +VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQV
Sbjct: 319 NLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQV 378
Query: 442 LNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 493
LN LT+AST ++ KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM
Sbjct: 379 LNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALM 438
Query: 494 VYITIGSAAYPILEFLEEWGTENFE 518
YI++GS PILEFLEEW EN E
Sbjct: 439 AYISVGSQPSPILEFLEEWSMENLE 463
>gi|378755195|gb|EHY65222.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida sp. 1
ERTm2]
Length = 1137
Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust.
Identities = 268/517 (51%), Positives = 368/517 (71%), Gaps = 37/517 (7%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS-- 74
TQE+ W V+SA+F++KGLVRQQLDSF+EF Q+TMQE+VDE++ I + S +++
Sbjct: 5 TQEDCWKVVSAFFKDKGLVRQQLDSFNEFIQSTMQEVVDENSKIVLMAHSPTGEEEKARK 64
Query: 75 ---DFAEIYLSKP-MMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE- 129
+F +IY+SKP +TE DG T+ +F AR+R+LTYSA LY+D+ +K H G+E
Sbjct: 65 YTIEFKQIYVSKPPTITEPDGRTSPMFPNDARVRSLTYSASLYIDI----VKTEHIGDEE 120
Query: 130 -------------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQE 176
+PIMLRS YC K + + EC YD+GGYFI+NGSEKVLIA E
Sbjct: 121 VESRTYKRMPIGSIPIMLRSLYCVYSNTDDKDMNRIEECTYDQGGYFIVNGSEKVLIAHE 180
Query: 177 KMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHAT 236
+M++N VY+FKK P+ Y Y AE+ S+ + R PS++ + +++R+S G ++ A
Sbjct: 181 RMASNLVYIFKKAPPSPYLYTAEMRSVPDHGLRLPSSLTIRLVARSSDNASGGGYFLRAL 240
Query: 237 LPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ----Q 292
LP+ + ++P++++FRALGF +D++ILEHICYDF DT+M+ +LRPS+EEAF IQ+Q
Sbjct: 241 LPHAKQDVPVVVIFRALGFVSDKEILEHICYDFSDTEMLSMLRPSIEEAFVIQDQGVALD 300
Query: 293 YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGR 352
YIGKR A G ++EK IK+AK++ Q+E LPHVGT +FCETKKAY G+ I++LL+ ALGR
Sbjct: 301 YIGKRVAPAGFSKEKRIKFAKDLFQREFLPHVGTKEFCETKKAYLLGYTINKLLMVALGR 360
Query: 353 RAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKT 412
R+E+DRDHYG KRLDLAGPL+ GLFR LF+K++ ++ Y+Q+C+D KD+NL ++ T
Sbjct: 361 RSEEDRDHYGRKRLDLAGPLMAGLFRMLFKKMSNELAKYMQRCIDGNKDLNLIVGLRTST 420
Query: 413 ITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPR 463
+T GL+YSLATGNWG Q + RAGV+QVLN Y ST ++ KLAKPR
Sbjct: 421 LTNGLRYSLATGNWGEQSKSMQARAGVAQVLNRYNYISTLSHLRRVNTPIGRDGKLAKPR 480
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGS 500
QLH+S WGM+CPAETPEGQACGLVKN ALM +I++GS
Sbjct: 481 QLHSSHWGMVCPAETPEGQACGLVKNFALMSHISVGS 517
>gi|149244118|ref|XP_001526602.1| DNA-directed RNA polymerase II polypeptide 2 [Lodderomyces
elongisporus NRRL YB-4239]
gi|146448996|gb|EDK43252.1| DNA-directed RNA polymerase II polypeptide 2 [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1238
Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust.
Identities = 285/551 (51%), Positives = 378/551 (68%), Gaps = 47/551 (8%)
Query: 12 EEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPG 71
E + T E+ W VIS++F+EKGLV QQLDSFDEF ++T+QE+V E + + + +QH
Sbjct: 18 EAQNITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSHLILDQPAQHTSE 77
Query: 72 QQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVI--- 121
+ D F +IY+SKP TE DG T +F + ARLRNLTYS+P+YVD+TKRV
Sbjct: 78 KDHDNKRYEINFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPIYVDMTKRVFTSD 137
Query: 122 -KKGHDGE--------------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEG 160
K D E +VPIMLRS +C L + EL ECPYD G
Sbjct: 138 DNKRIDNELEWHEIDVEGEKKTSKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMG 197
Query: 161 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLS 220
GYF+INGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R S++ + +
Sbjct: 198 GYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYG 257
Query: 221 RTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRP 280
R + G+S + I ATLPYI+ +IPI+I+FRALG D DILEHICYD D QM+E+L+P
Sbjct: 258 RD--EKGTSARTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDQNDWQMLEMLKP 315
Query: 281 SLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAY 336
+EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ + ET+KA+
Sbjct: 316 CVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFETRKAF 374
Query: 337 YFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
+ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +Y+Q+CV
Sbjct: 375 FLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCV 434
Query: 397 DNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY- 454
+N K+ NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 435 ENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLR 494
Query: 455 -------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILE 507
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ + PIL
Sbjct: 495 RTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSDPILS 554
Query: 508 FLEEWGTENFE 518
FL +WG E E
Sbjct: 555 FLRDWGLEPLE 565
>gi|190333344|gb|AAS67502.2| DNA-dependent RNA polymerase II second largest subunit, partial
[Meyerozyma guilliermondii]
Length = 1219
Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust.
Identities = 286/546 (52%), Positives = 377/546 (69%), Gaps = 47/546 (8%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD- 75
T E+ W VIS++F+EKGLV QQLDSFDEF ++T+QE+V E + + + +QH + +
Sbjct: 19 TPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHTSEEDHEN 78
Query: 76 ------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG-- 127
F +IY+SKP TE DG T +F + ARLRNLTYS+PLYVD+TKRV+K +
Sbjct: 79 RRYEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLKSDDNAGN 138
Query: 128 -------------EE---------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFII 165
EE VPIMLRS +C L + EL ECPYD GGYF+I
Sbjct: 139 EHELEWIEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGYFVI 198
Query: 166 NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAK 225
NGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R S++ + + R +
Sbjct: 199 NGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERGSRLISSMQIKLYGR--EE 256
Query: 226 GGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA 285
+S + I ATLPYI+ +IPI+I+FRALG D DILEHICYD D QM+E+L+P +EE
Sbjct: 257 KSTSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEMLKPCVEEG 316
Query: 286 FFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHI 341
F IQ ++ +IG+RGA +G+ REK I+YAK+ILQKE+LP++ + ET+KA++ G++
Sbjct: 317 FVIQEREVALDFIGRRGA-LGIKREKRIQYAKDILQKELLPNITQDEGFETRKAFFLGYM 375
Query: 342 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD 401
++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +Y+Q+CV+N K
Sbjct: 376 VNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQRCVENDKV 435
Query: 402 VNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------ 454
NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 436 FNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 495
Query: 455 --LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEW 512
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ + PIL FLEEW
Sbjct: 496 IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPILYFLEEW 555
Query: 513 GTENFE 518
G E E
Sbjct: 556 GMEPLE 561
>gi|241948201|ref|XP_002416823.1| DNA-dependent RNA polymerase II component, putative [Candida
dubliniensis CD36]
gi|223640161|emb|CAX44408.1| DNA-dependent RNA polymerase II component, putative [Candida
dubliniensis CD36]
Length = 1234
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 284/549 (51%), Positives = 379/549 (69%), Gaps = 46/549 (8%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH---- 68
+E TQE+ W VI+++F+EKGLV QQLDSFDEF + ++QE+V E + + + +QH
Sbjct: 17 DEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSEK 76
Query: 69 ---NPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK--- 122
N + F +IY+SKP TE DG T +F + ARLRNLTYS+PLYVD+T +V K
Sbjct: 77 DHENKRYEITFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFKSDD 136
Query: 123 -KGHDGE-------------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGY 162
K D E +VPIMLRS +C L ++ EL ECPYD GGY
Sbjct: 137 NKRKDNELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGY 196
Query: 163 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRT 222
F+INGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R S++ + + R
Sbjct: 197 FVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRD 256
Query: 223 SAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSL 282
+ G SG+ I ATLPYI+ +IPI+I+FRALG D DILEHICYD D QM+E+L+P +
Sbjct: 257 --EKGVSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCV 314
Query: 283 EEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYF 338
EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ + ET+KA++
Sbjct: 315 EEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFL 373
Query: 339 GHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN 398
G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +Y+Q+CV+N
Sbjct: 374 GYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVEN 433
Query: 399 GKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--- 454
G D N+ A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 434 GGDFNVTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRT 493
Query: 455 -----LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFL 509
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ + PIL FL
Sbjct: 494 NTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPILGFL 553
Query: 510 EEWGTENFE 518
++G E E
Sbjct: 554 RDYGLEVLE 562
>gi|68475107|ref|XP_718439.1| hypothetical protein CaO19.10857 [Candida albicans SC5314]
gi|68475648|ref|XP_718172.1| hypothetical protein CaO19.3349 [Candida albicans SC5314]
gi|46439928|gb|EAK99240.1| hypothetical protein CaO19.3349 [Candida albicans SC5314]
gi|46440204|gb|EAK99513.1| hypothetical protein CaO19.10857 [Candida albicans SC5314]
gi|238879352|gb|EEQ42990.1| DNA-directed RNA polymerase II polypeptide 2 [Candida albicans
WO-1]
Length = 1234
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 284/549 (51%), Positives = 379/549 (69%), Gaps = 46/549 (8%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH---- 68
+E TQE+ W VI+++F+EKGLV QQLDSFDEF + ++QE+V E + + + +QH
Sbjct: 17 DEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSEK 76
Query: 69 ---NPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK--- 122
N + F +IY+SKP TE DG T +F + ARLRNLTYS+PLYVD+T +V K
Sbjct: 77 DHENKRYEITFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFKSDD 136
Query: 123 -KGHDGE-------------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGY 162
K D E +VPIMLRS +C L ++ EL ECPYD GGY
Sbjct: 137 NKRKDNELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGY 196
Query: 163 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRT 222
F+INGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R S++ + + R
Sbjct: 197 FVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRD 256
Query: 223 SAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSL 282
+ G SG+ I ATLPYI+ +IPI+I+FRALG D DILEHICYD D QM+E+L+P +
Sbjct: 257 --EKGVSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCV 314
Query: 283 EEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYF 338
EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ + ET+KA++
Sbjct: 315 EEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFL 373
Query: 339 GHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN 398
G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +Y+Q+CV+N
Sbjct: 374 GYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVEN 433
Query: 399 GKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--- 454
G D N+ A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 434 GGDFNVTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRT 493
Query: 455 -----LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFL 509
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ + PIL FL
Sbjct: 494 NTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPILGFL 553
Query: 510 EEWGTENFE 518
++G E E
Sbjct: 554 RDYGLEVLE 562
>gi|255730467|ref|XP_002550158.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240132115|gb|EER31673.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 1240
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 289/554 (52%), Positives = 384/554 (69%), Gaps = 49/554 (8%)
Query: 11 DEEEET-TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH- 68
DEE ET TQE+ W VIS++F+EKGLV QQLDSFDEF + ++QE+V E + + + +QH
Sbjct: 14 DEEIETITQEDCWTVISSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHT 73
Query: 69 ------NPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
N + +F +IY+SK TE DG T ++F + ARLRNLTYS+PLYVD+TKR +
Sbjct: 74 SVADHKNKRYEIEFGKIYISKTSQTEGDGTTHSVFPQEARLRNLTYSSPLYVDMTKRKFE 133
Query: 123 ----KGHDGE---------------------EVPIMLRSSYCTLYQNSQKALTELGECPY 157
K D E +VPIMLRS +C L ++ EL ECPY
Sbjct: 134 SDDNKRKDNELEWEEIEVDDKEGPQSKVFLGKVPIMLRSKFCMLNGLAEHEFYELKECPY 193
Query: 158 DEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVP 217
D GGYF+INGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R S++ +
Sbjct: 194 DMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALEKGSRLISSMQIK 253
Query: 218 MLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMEL 277
+ R + G +G+ I ATLPYI+ +IPI+I+FRALG D DILEHICYD D QM+E+
Sbjct: 254 LYGRD--EKGVAGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEM 311
Query: 278 LRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETK 333
L+P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ + ET+
Sbjct: 312 LKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFETR 370
Query: 334 KAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQ 393
KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL GLFR LF+KLT D+ +Y+Q
Sbjct: 371 KAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLAGLFRILFKKLTKDIYNYMQ 430
Query: 394 KCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFT 452
+CV+N D NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST +
Sbjct: 431 RCVENDSDFNLTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLS 490
Query: 453 YY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYP 504
+ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++GS++ P
Sbjct: 491 HLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGSSSEP 550
Query: 505 ILEFLEEWGTENFE 518
IL FL ++G E E
Sbjct: 551 ILGFLRDFGLEVLE 564
>gi|6606093|gb|AAF19059.1|AF107787_1 DNA-dependent RNA polymerase II RPB140 [Candida albicans]
Length = 1210
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 284/549 (51%), Positives = 379/549 (69%), Gaps = 46/549 (8%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH---- 68
+E TQE+ W VI+++F+EKGLV QQLDSFDEF + ++QE+V E + + + +QH
Sbjct: 17 DEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSEK 76
Query: 69 ---NPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK--- 122
N + F +IY+SKP TE DG T +F + ARLRNLTYS+PLYVD+T +V K
Sbjct: 77 DHENKRYEITFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFKSDD 136
Query: 123 -KGHDGE-------------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGY 162
K D E +VPIMLRS +C L ++ EL ECPYD GGY
Sbjct: 137 NKRKDNELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGY 196
Query: 163 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRT 222
F+INGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R S++ + + R
Sbjct: 197 FVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRD 256
Query: 223 SAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSL 282
+ G SG+ I ATLPYI+ +IPI+I+FRALG D DILEHICYD D QM+E+L+P +
Sbjct: 257 --EKGVSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCV 314
Query: 283 EEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYF 338
EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ + ET+KA++
Sbjct: 315 EEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFL 373
Query: 339 GHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN 398
G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +Y+Q+CV+N
Sbjct: 374 GYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVEN 433
Query: 399 GKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--- 454
G D N+ A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 434 GGDFNVTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRT 493
Query: 455 -----LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFL 509
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ + PIL FL
Sbjct: 494 NTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPILGFL 553
Query: 510 EEWGTENFE 518
++G E E
Sbjct: 554 RDYGLEVLE 562
>gi|449330210|gb|AGE96471.1| DNA-directed RNA polymerase II second largest subunit
[Encephalitozoon cuniculi]
Length = 1141
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 276/536 (51%), Positives = 374/536 (69%), Gaps = 41/536 (7%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ 72
E T+E +W++IS++FE+KGLVRQQLDSFD+F + MQE+++ES I + +S G
Sbjct: 2 ESAFTKEHSWSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIV--QSAPTAGI 59
Query: 73 QSD------FAEIYLSKP-MMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKK-- 123
++ F +IY+SKP + TESDG T T+F AR+R+LTY++PL++DVTK + +
Sbjct: 60 ETQKRIAVRFGQIYVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETLSELG 119
Query: 124 ---GHDGEEVP-----IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQ 175
H VP +MLRSSYC LY K L +LGECPYD+GGYFI+NGSEKV++AQ
Sbjct: 120 VVDKHKYSRVPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVNGSEKVIVAQ 179
Query: 176 EKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHA 235
E+M++N VYVFKK QP Y + AE+ S+ E +R PST+ S K S I
Sbjct: 180 ERMASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTL--------SMKLCRSPGVIRV 231
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
+LP ++ ++P+ +L+RALGF +D++I++HI Y+ D +M ELL+ S+EE +Q+Q
Sbjct: 232 SLPLVKQDVPLFVLYRALGFLSDKEIIDHILYE-DDEEMFELLKESIEEGTVVQDQNVAL 290
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
YIGKR A +G +EK I AK++L KE+LPH+GT +FCETKKAY+ G+I+ RLLL ALG
Sbjct: 291 DYIGKRSAPIGTPQEKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALG 350
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYG KR+DL+GPLL LFRTLF+KL D ++QKC++NG++ N+ +KA
Sbjct: 351 RRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIENGREFNIALGLKAS 410
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKP 462
IT G +Y+LATGNWG Q A TRAGV+QVLN + ST ++ KLA P
Sbjct: 411 IITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAP 470
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEGQACGLVKNL+LM YI++GS++ P++EFLEE G E+ E
Sbjct: 471 RQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLIEFLEECGVESLE 526
>gi|401827615|ref|XP_003888100.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
50504]
gi|392999300|gb|AFM99119.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
50504]
Length = 1141
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 275/532 (51%), Positives = 371/532 (69%), Gaps = 41/532 (7%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD- 75
T+E +W++IS++FE+KGLVRQQLDSFD+F + MQE++DES I + +S G ++
Sbjct: 6 TKEHSWSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVIDESPAIIV--QSAPTAGTETQK 63
Query: 76 -----FAEIYLSKP-MMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKK-----G 124
F +IY+SKP + TESDG T T+F AR R+LTY++PL++DV K + +
Sbjct: 64 RITVRFGQIYVSKPPIYTESDGRTITVFPNEARTRDLTYASPLFIDVIKETVSELGVVDK 123
Query: 125 HDGEEVP-----IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMS 179
H VP +MLRSSYC L+ K L +LGECPYD+GGYFI+NGSEKV++AQE+M+
Sbjct: 124 HKYSRVPFGSLPVMLRSSYCVLHGLGDKDLIDLGECPYDQGGYFIVNGSEKVIVAQERMA 183
Query: 180 TNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPY 239
+N VYVFKK QP Y + AE+ S+ E +R PST+ S K S I +LP
Sbjct: 184 SNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTL--------SMKLCRSPVAIRVSLPL 235
Query: 240 IRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIG 295
++ ++P+ +L+RALGF +D++I++HI Y+ D +M ELL+ S+EE +Q+Q YIG
Sbjct: 236 VKQDVPLFVLYRALGFLSDKEIIDHILYE-DDDEMFELLKESIEEGMVVQDQNVALDYIG 294
Query: 296 KRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
KR A VG +EK I AK++L KE+LPH+GT +FCETKKAY+ G+I+ RLLL ALGRR
Sbjct: 295 KRTAPVGTPQEKRIMMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNP 354
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITG 415
DDRDHYG KR+DL+GPLL LFRTLF+KL D ++QKC++NG++ N+ +KA IT
Sbjct: 355 DDRDHYGKKRMDLSGPLLASLFRTLFKKLCADTTRHMQKCIENGREFNIALGLKASIITQ 414
Query: 416 GLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLH 466
G +Y+LATGNWG Q A TRAGV+QVLN + ST ++ KLA PRQLH
Sbjct: 415 GFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAPRQLH 474
Query: 467 NSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
N+ WGM+CPAETPEGQACGLVKNL+LM YI++GS++ P++EFLEE G E+ E
Sbjct: 475 NTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLIEFLEECGVESLE 526
>gi|406604825|emb|CCH43700.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 1241
Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust.
Identities = 288/553 (52%), Positives = 377/553 (68%), Gaps = 49/553 (8%)
Query: 12 EEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH--- 68
E E+ T E+ W VIS++F EKGLV QQLDSFDEF ++QE+V E + + + +QH
Sbjct: 35 ETEDITSEDCWTVISSFFREKGLVSQQLDSFDEFINTSIQELVWEDSTLILEQPAQHITE 94
Query: 69 ----NPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK------ 118
N + F +I+LS+P MTESDG T +F + ARLRNLTY+APL+V++ K
Sbjct: 95 DDNINRKYEIKFGKIFLSRPTMTESDGTTQQMFPQEARLRNLTYAAPLFVEMDKITYETI 154
Query: 119 ------RVIKK---------GHDGEEV-----PIMLRSSYCTLYQNSQKALTELGECPYD 158
VIK G+D ++V PIML+S YC L ++ + L ECPYD
Sbjct: 155 DGTNDWTVIKDEVEDELDDDGNDNKKVYIGRVPIMLKSKYCLLRDLEEEEMYSLKECPYD 214
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GGYF+INGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R S++ + +
Sbjct: 215 MGGYFVINGSEKVLIAQERSAANIVQVFKKSAPSPVSHVAEIRSALEKGSRLISSMQIKL 274
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
R KG SG+ I ATLPYI+ +IPI+I+FRALG D DILEHICYD D QM E+L
Sbjct: 275 YGRDD-KG--SGRTIKATLPYIKQDIPIVIVFRALGIVPDGDILEHICYDQNDWQMFEML 331
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
+P +EE F IQ+++ +IG+RG +G+ REK I+YAK+ILQKE LPH+ + E++K
Sbjct: 332 KPCVEEGFVIQDREVALDFIGRRGNALGIRREKRIQYAKDILQKEFLPHITQQEGFESRK 391
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
A++ G++++RLLLCAL R+ +DDRDH+G KRLDLAGPLL LFR LF+KLT D+ Y+Q+
Sbjct: 392 AFFLGYMVNRLLLCALERKPQDDRDHFGKKRLDLAGPLLANLFRILFKKLTRDIYRYMQR 451
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTY 453
V+ D NL+ A+KA TIT GLKYSLATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 452 SVETDTDFNLKLAVKATTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 511
Query: 454 Y--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++GS + PI
Sbjct: 512 LRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSGSDPI 571
Query: 506 LEFLEEWGTENFE 518
+ FLEEWG E E
Sbjct: 572 IYFLEEWGMEPLE 584
>gi|19074634|ref|NP_586140.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
[Encephalitozoon cuniculi GB-M1]
gi|51702025|sp|Q8SR75.1|RPB2_ENCCU RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2
gi|19069276|emb|CAD25744.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
[Encephalitozoon cuniculi GB-M1]
Length = 1141
Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust.
Identities = 276/536 (51%), Positives = 374/536 (69%), Gaps = 41/536 (7%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ 72
E T+E +W++IS++FE+KGLVRQQLDSFD+F + MQE+++ES I + +S G
Sbjct: 2 ESAFTKEHSWSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIV--QSAPTAGI 59
Query: 73 QSD------FAEIYLSKP-MMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKK-- 123
++ F +IY+SKP + TESDG T T+F AR+R+LTY++PL++DVTK + +
Sbjct: 60 ETQKRIAVRFGQIYVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETLSELG 119
Query: 124 ---GHDGEEVP-----IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQ 175
H VP +MLRSSYC LY K L +LGECPYD+GGYFI+NGSEKV++AQ
Sbjct: 120 VVDKHKYSRVPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVNGSEKVIVAQ 179
Query: 176 EKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHA 235
E+M++N VYVFKK QP Y + AE+ S+ E +R PST+ S K S I
Sbjct: 180 ERMASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTL--------SMKLCRSPGVIRV 231
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
+LP ++ ++P+ +L+RALGF +D++I++HI Y+ D +M ELL+ S+EE +Q+Q
Sbjct: 232 SLPLVKQDVPLFVLYRALGFLSDKEIIDHILYE-DDEEMFELLKESIEEGTVVQDQNVAL 290
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
YIGKR A +G +EK I AK++L KE+LPH+GT +FCETKKAY+ G+I+ RLLL ALG
Sbjct: 291 DYIGKRSAPIGTPQEKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALG 350
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYG KR+DL+GPLL LFRTLF+KL D ++QKC++NG++ N+ +KA
Sbjct: 351 RRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIENGREFNIALGLKAS 410
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKP 462
IT G +Y+LATGNWG Q A TRAGV+QVLN + ST ++ KLA P
Sbjct: 411 IITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAP 470
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEGQACGLVKNL+LM YI++GS++ P++EFLEE G E+ E
Sbjct: 471 RQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLEECGVESLE 526
>gi|387593606|gb|EIJ88630.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida parisii
ERTm3]
gi|387597261|gb|EIJ94881.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida parisii
ERTm1]
Length = 1137
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 268/510 (52%), Positives = 362/510 (70%), Gaps = 37/510 (7%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS-- 74
+QE+ W V+SA+F+EKGLVRQQLDSF+EF Q+TMQE+VDE++ I + S +Q+
Sbjct: 5 SQEDCWKVVSAFFKEKGLVRQQLDSFNEFIQSTMQEVVDENSKIVLLAHSPTGEEEQARK 64
Query: 75 ---DFAEIYLSKP-MMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE- 129
+F +IY+SKP +TE DG T+++F AR+R+LTYSA LY+D+ +K H G+E
Sbjct: 65 YTIEFKQIYVSKPPTITEPDGRTSSMFPNDARVRSLTYSASLYIDI----VKTEHIGDEE 120
Query: 130 -------------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQE 176
+PIMLRS YC + + + EC YD+GGYFI+NGSEKVLIA E
Sbjct: 121 VESRSYKKMPIGSIPIMLRSLYCVYSNTDDRDMNRIEECTYDQGGYFIVNGSEKVLIAHE 180
Query: 177 KMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHAT 236
+M++N VY+FKK P+ Y Y AE+ S+ + R PS++ + ++SR S G + A
Sbjct: 181 RMASNLVYIFKKSPPSPYLYTAEMRSVPDHGLRLPSSLTIRLVSRASDSASGGGYLLRAL 240
Query: 237 LPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ----Q 292
LP+ + ++P++++FRALGF +D++ILEHICYDF DT+M+ +LRPS+EEAF IQ+Q
Sbjct: 241 LPHAKLDVPVVVIFRALGFVSDKEILEHICYDFSDTEMLSMLRPSIEEAFVIQDQGVALD 300
Query: 293 YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGR 352
YIGKR A G ++EK IK+AK++ QKE LPHVGT +FCETKKAY FG+ I++LL+ ALGR
Sbjct: 301 YIGKRVAPAGFSKEKRIKFAKDLFQKEFLPHVGTKEFCETKKAYLFGYTINKLLMVALGR 360
Query: 353 RAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKT 412
R+E+DRDHYG KRLDLAGPL+ GLFR LF+K++ ++ Y+Q+C+D KD+NL ++ T
Sbjct: 361 RSEEDRDHYGRKRLDLAGPLMTGLFRMLFKKMSNELAKYMQRCIDGNKDLNLIVGLRTST 420
Query: 413 ITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPR 463
+T GL+YSLATGNWG Q + RAGV+QVLN Y ST ++ KLAKPR
Sbjct: 421 LTNGLRYSLATGNWGEQSKSMQARAGVAQVLNRYNYISTLSHLRRVNTPIGRDGKLAKPR 480
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALM 493
QLH+S WGM+CPAETPEGQACGLVKN ALM
Sbjct: 481 QLHSSHWGMVCPAETPEGQACGLVKNFALM 510
>gi|353243888|emb|CCA75371.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2)
[Piriformospora indica DSM 11827]
Length = 1223
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 282/552 (51%), Positives = 379/552 (68%), Gaps = 45/552 (8%)
Query: 9 EEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH 68
EE + ++ TQE+ W VI+A+FE++GLVRQQLDSF+EF NT+Q+IV++S D+ + QH
Sbjct: 22 EEGDPDKITQEDCWTVIAAFFEKRGLVRQQLDSFNEFINNTIQDIVEDSGDLNLEQHEQH 81
Query: 69 NPGQQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV 120
G ++D F ++YL++P +TE DG+ + LF + ARLRNLTYSA L V++ +
Sbjct: 82 T-GAETDKSTRHKIKFGQVYLTRPSVTEKDGQVSPLFPQEARLRNLTYSATLMVEIVEEK 140
Query: 121 IKK------GHDGE---------------EVPIMLRSSYCTLYQNSQKALTELGECPYDE 159
++ G D E ++PIMLRS C LY +L ECP D
Sbjct: 141 QEQVPNDEGGWDWERIPGSIPGFNRLPLAKIPIMLRSDICALYTIPDPEKYDLNECPDDP 200
Query: 160 GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPML 219
GGYFII+G EKVLIAQE+M+ NHVYVF K QP+ +++AE+ S+ E + S+ V +
Sbjct: 201 GGYFIISGQEKVLIAQERMAGNHVYVFAKGQPSPISFLAEIRSVPERGGKLLSSFQVKLF 260
Query: 220 SRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
+ K SG I A++PYI+T++PI ILFRA+G AD DILEHICYD D QM+E+L+
Sbjct: 261 HKGIEK--QSGGAIRASVPYIKTDVPIWILFRAMGVLADRDILEHICYDGHDDQMLEMLK 318
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
P ++E F +Q+++ +IG+RG T ++RE+ I+YA+EI+QKE+LPH+ + E +KA
Sbjct: 319 PCIDEGFVVQHREIALDFIGRRGNTPTISRERRIRYAQEIIQKELLPHISMEEGNEARKA 378
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+ G++IHRLLL AL RR DDRDH+G KRLDLAGPLL LFR LFRK+ DV Y+QKC
Sbjct: 379 YFVGYMIHRLLLAALDRREIDDRDHFGKKRLDLAGPLLSTLFRMLFRKVVKDVYRYLQKC 438
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
V++GK ++ AIK TI+ GLKYSLATGNWG Q NA ++AGVSQVLN TYAST ++
Sbjct: 439 VESGKAFDVGRAIKLGTISNGLKYSLATGNWGDQQNAMSSKAGVSQVLNRYTYASTLSHL 498
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM I++GS + P+
Sbjct: 499 RRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSYSAPVG 558
Query: 507 EFLEEWGTENFE 518
EFL+EWG E E
Sbjct: 559 EFLDEWGMEALE 570
>gi|354544175|emb|CCE40898.1| hypothetical protein CPAR2_109360 [Candida parapsilosis]
Length = 1228
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 280/552 (50%), Positives = 379/552 (68%), Gaps = 47/552 (8%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNP 70
D+ + T E+ W VI+++F+EKGLV QQLDSFDEF ++T+QE++ E + + + +QH
Sbjct: 12 DDSQSITPEDCWTVITSFFQEKGLVSQQLDSFDEFIESTIQELIWEDSHLILDQPAQHTS 71
Query: 71 GQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV--- 120
+ S F ++Y+SKP TE DG T +F + ARLRNLTYSAPLYVD++K+V
Sbjct: 72 EKDSKNKRYEITFGKMYISKPSQTEGDGTTHPMFPQEARLRNLTYSAPLYVDMSKKVFES 131
Query: 121 ---------------IKKGHDGE------EVPIMLRSSYCTLYQNSQKALTELGECPYDE 159
I +G D + +VPIM+RS +C L + + EL ECPYD
Sbjct: 132 DDNNRVDNELEWKEQIVQGEDSDSQVYLGKVPIMVRSKFCMLRDLGEHEMYELKECPYDM 191
Query: 160 GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPML 219
GGYF+INGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R S + + +
Sbjct: 192 GGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISAMQIKLY 251
Query: 220 SRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
R + SS + I ATLPYI+ +IPI+I+FRALG D DILEHICYD D QM+E+L+
Sbjct: 252 GRD--EKSSSARTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLK 309
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ + ET+KA
Sbjct: 310 PCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFETRKA 368
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +Y+Q+C
Sbjct: 369 FFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRC 428
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
V+N K+ NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 429 VENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHL 488
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ + PI
Sbjct: 489 RRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPIS 548
Query: 507 EFLEEWGTENFE 518
FL +WG E E
Sbjct: 549 SFLRDWGLEPLE 560
>gi|448519935|ref|XP_003868181.1| RNA polymerase II subunit B150 [Candida orthopsilosis Co 90-125]
gi|380352520|emb|CCG22746.1| RNA polymerase II subunit B150 [Candida orthopsilosis]
Length = 1228
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 279/552 (50%), Positives = 380/552 (68%), Gaps = 47/552 (8%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNP 70
D+ + T E+ W VI+++F+EKGLV QQLDSFDEF ++T+QE++ E + + + +QH
Sbjct: 12 DDSQSITPEDCWTVITSFFQEKGLVSQQLDSFDEFIESTIQELIWEDSHLILDQPAQHTS 71
Query: 71 GQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV--- 120
+ + F ++Y+SKP TE DG T +F + ARLRNLTYSAPLYVD++K+V
Sbjct: 72 DKDNKNKRYEITFGKMYISKPSQTEGDGTTHLMFPQEARLRNLTYSAPLYVDMSKKVFES 131
Query: 121 ---------------IKKGHDGE------EVPIMLRSSYCTLYQNSQKALTELGECPYDE 159
I +G D + +VPIM+RS +C L + + EL ECPYD
Sbjct: 132 DDNNRKDNELEWKEQIVQGEDSDSKVYMGKVPIMVRSKFCMLRDLGEHEMYELKECPYDM 191
Query: 160 GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPML 219
GGYF+INGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R S++ + +
Sbjct: 192 GGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLY 251
Query: 220 SRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
R + SS + I ATLPYI+ +IPI+I+FRALG D DILEHICYD D QM+E+L+
Sbjct: 252 GRD--EKSSSARTIRATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLK 309
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ + ET+KA
Sbjct: 310 PCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFETRKA 368
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +Y+Q+C
Sbjct: 369 FFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRC 428
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
V+N K+ NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 429 VENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHL 488
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ + PI
Sbjct: 489 RRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPIS 548
Query: 507 EFLEEWGTENFE 518
FL +WG E E
Sbjct: 549 SFLRDWGLEPLE 560
>gi|396082220|gb|AFN83830.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon romaleae
SJ-2008]
Length = 1141
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 272/530 (51%), Positives = 369/530 (69%), Gaps = 37/530 (6%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD- 75
T+E +W++IS++FE+KGLVRQQLDSFD+F + MQE+++E+ I ++ Q
Sbjct: 6 TKEHSWSIISSFFEQKGLVRQQLDSFDQFVRTKMQEVINENPAIIVQSAPTAGTEIQKRI 65
Query: 76 ---FAEIYLSKP-MMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKK-----GHD 126
F +IY+SKP + TESDG T T+F AR+R+LTY++PL++DV K + + H
Sbjct: 66 TVRFGQIYVSKPPIYTESDGRTITVFPNEARIRDLTYASPLFIDVIKETVSELGVVDKHK 125
Query: 127 GEEVP-----IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTN 181
VP +MLRSSYC L+ K L +LGECPYD+GGYFI+NGSEKV++AQE+M++N
Sbjct: 126 YSRVPFGSLPVMLRSSYCVLHGLGDKDLIDLGECPYDQGGYFIVNGSEKVIVAQERMASN 185
Query: 182 HVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIR 241
VYVFKK QP Y + AE+ S+ E +R PST+ S K S I +LP ++
Sbjct: 186 TVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTL--------SMKLCRSPGAIRVSLPLVK 237
Query: 242 TEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKR 297
+IP+ +L+RALGF +D++I++HI Y+ D +M ELL+ S+EE +Q+Q YIGKR
Sbjct: 238 QDIPLFVLYRALGFLSDKEIIDHILYE-DDDEMFELLKESIEEGTVVQDQNVALDYIGKR 296
Query: 298 GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDD 357
A VG +EK I A+++L KE+LPH+GT +FCETKKAY+ G+I+ RLLL ALGRR DD
Sbjct: 297 SAPVGTPQEKRITIARDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDD 356
Query: 358 RDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGL 417
RDHYG KR+DL+GPLL LFRTLF+KL D ++QKC++NG++ N+ +KA IT G
Sbjct: 357 RDHYGKKRMDLSGPLLASLFRTLFKKLCADTTRHMQKCIENGREFNIALGLKASIITQGF 416
Query: 418 KYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLHNS 468
+Y+LATGNWG Q A TRAGV+QVLN + ST ++ KLA PRQLHN+
Sbjct: 417 RYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAPRQLHNT 476
Query: 469 QWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
WGM+CPAETPEGQACGLVKNL+LM YI++GS++ P++EFLEE G E+ E
Sbjct: 477 HWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLIEFLEECGVESLE 526
>gi|410079905|ref|XP_003957533.1| hypothetical protein KAFR_0E02450 [Kazachstania africana CBS 2517]
gi|372464119|emb|CCF58398.1| hypothetical protein KAFR_0E02450 [Kazachstania africana CBS 2517]
Length = 1222
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 283/553 (51%), Positives = 375/553 (67%), Gaps = 48/553 (8%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
EDE T E++WAVIS++F EKGLV QQLDSF++F T+Q+I+ E + + + +QH
Sbjct: 15 EDESAPITAEDSWAVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHT 74
Query: 70 PGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR--- 119
+ F +IY++KPM+ ESDG T L+ + ARLRNLTYS+ L+VDV KR
Sbjct: 75 TEADNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVRKRTYE 134
Query: 120 -------------VIKKGHDGEE--------VPIMLRSSYCTLYQNSQKALTELGECPYD 158
+ ++ D E +PIMLRS C L ++ L +L ECP+D
Sbjct: 135 AVDVPGRDLKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFD 194
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GGYFIINGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R ST+ V +
Sbjct: 195 MGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKL 254
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
R S SS + I ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+E+L
Sbjct: 255 YGRES----SSSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEML 310
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
+P +E+ F IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ + E++K
Sbjct: 311 KPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRK 370
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
A++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLLG LF+TLFRKLT D+ Y+Q+
Sbjct: 371 AFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFRYMQR 430
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTY 453
V+ D N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 431 TVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 490
Query: 454 Y--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ PI
Sbjct: 491 LRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPI 550
Query: 506 LEFLEEWGTENFE 518
+ FL EWG E E
Sbjct: 551 ITFLSEWGMEPLE 563
>gi|367008806|ref|XP_003678904.1| hypothetical protein TDEL_0A03610 [Torulaspora delbrueckii]
gi|359746561|emb|CCE89693.1| hypothetical protein TDEL_0A03610 [Torulaspora delbrueckii]
Length = 1222
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 283/553 (51%), Positives = 375/553 (67%), Gaps = 48/553 (8%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
EDE T E++WAVISA+F EKGLV QQLDSF++F T+Q+I+ E + + + +QH
Sbjct: 17 EDENSPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHT 76
Query: 70 PGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR--- 119
+ F +IY++KPM+ ESDG T L+ + ARLRNLTYS+ L+VDV KR
Sbjct: 77 TEADNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYE 136
Query: 120 -------------VIKKGHDGEE--------VPIMLRSSYCTLYQNSQKALTELGECPYD 158
+ ++ D E +PIMLRS C L ++ L +L ECP+D
Sbjct: 137 AVDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSDATELDLYKLKECPFD 196
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GGYFIINGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R ST+ V +
Sbjct: 197 MGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKL 256
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
R GSS + I ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+E+L
Sbjct: 257 YGRE----GSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEML 312
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
+P +E+ F IQ+++ +IG+RG +G+ +EK I+YA++ILQKE LPH+ + E++K
Sbjct: 313 KPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGFESRK 372
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
A++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLFRKLT D+ Y+Q+
Sbjct: 373 AFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQR 432
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTY 453
V+ KD N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 433 TVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 492
Query: 454 Y--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ PI
Sbjct: 493 LRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPI 552
Query: 506 LEFLEEWGTENFE 518
+ FL EWG E E
Sbjct: 553 ITFLSEWGMEPLE 565
>gi|406694356|gb|EKC97684.1| DNA-directed RNA polymerase II subunit RPB2 [Trichosporon asahii
var. asahii CBS 8904]
Length = 1757
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 286/552 (51%), Positives = 362/552 (65%), Gaps = 50/552 (9%)
Query: 12 EEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPG 71
EEE +QE+ W VI+++F+EKGLVRQQL+SF+EF +NTMQE+VDE+ + + +QH G
Sbjct: 27 EEEPISQEDYWKVINSFFDEKGLVRQQLESFNEFVENTMQELVDENQRLTLDQHTQHT-G 85
Query: 72 QQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKK 123
D F +IYL+K MTE DG+T LF + ARLRNLTY+APLYVD+ K +
Sbjct: 86 VMGDETRRYEITFGQIYLAKVAMTEMDGQTVGLFPQEARLRNLTYAAPLYVDMKKSTLSA 145
Query: 124 G--------------------HDGEE-------VPIMLRSSYCTLYQNSQKALTELGECP 156
G EE VP+M+RS++C L+ L ECP
Sbjct: 146 GDVDDPIEADWKPAVDANGVMQGAEEDKIWIGKVPVMVRSNFCLLHGLPDDHFYALNECP 205
Query: 157 YDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV 216
YD+GGYFIINGSEKVLIAQE+M+ N VYVFKK P+ Y++EV S E + PS V
Sbjct: 206 YDQGGYFIINGSEKVLIAQERMAANTVYVFKKADPSPVTYLSEVTSQMEKGGKTPSKTVV 265
Query: 217 PMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMME 276
M R K ++G I LPY +T+IPI+I+FRALG D D+L HIC++ DT M+E
Sbjct: 266 KMYLRAQDKA-TTGSVIRVQLPYTKTDIPIVIVFRALGIVPDRDVLSHICFNPNDTAMLE 324
Query: 277 LLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET 332
+LRP +EEAF IQ++ +IG+RG TR + A +ILQKE LPHV + E+
Sbjct: 325 MLRPCIEEAFSIQDRDTALDFIGRRGQQEKGTRAVRQRAAFDILQKEFLPHVSVSEGFES 384
Query: 333 KKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYV 392
+KA++ G++IHRL ALGRR DDRDH+G KRLDLAGPLL LFR LF+KLT DV ++
Sbjct: 385 RKAFFLGYMIHRLCSAALGRRELDDRDHFGKKRLDLAGPLLANLFRILFKKLTRDVYRHL 444
Query: 393 QKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTF 451
QKCV+ K+ L AIK IT GLKYSLATGNWG Q A RAGVSQVLN T+AST
Sbjct: 445 QKCVETHKEFTLVNAIKPGIITNGLKYSLATGNWGDQAKAMQARAGVSQVLNRYTFASTL 504
Query: 452 TYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAY 503
++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YI++GS +
Sbjct: 505 SHLRRTNTPIGRDGKIAKPRQLHNTHWGLICPAETPEGQACGLVKNLALMSYISVGSYSA 564
Query: 504 PILEFLEEWGTE 515
P++EFLEEWG E
Sbjct: 565 PVMEFLEEWGLE 576
>gi|361128142|gb|EHL00094.1| putative DNA-directed RNA polymerase II subunit RPB2 [Glarea
lozoyensis 74030]
Length = 1263
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 276/576 (47%), Positives = 378/576 (65%), Gaps = 77/576 (13%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD- 75
T E+ WAVIS++FE KGLV QQLDSFDEF TMQE+V+E++ + + Q+NP D
Sbjct: 21 TAEDCWAVISSFFESKGLVSQQLDSFDEFVSTTMQELVEENSQLTL---DQNNPPSSDDN 77
Query: 76 ----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV----- 120
F + LS+P MTE DG TA + + ARLRNLTYS+PLY+++TK+V
Sbjct: 78 PIALRRYEIKFGTVLLSRPAMTEGDGTTAVMLPQEARLRNLTYSSPLYLEMTKKVSVAVE 137
Query: 121 ------------IKKGH---------------DGEEV------------------PIMLR 135
+ + H G+E+ PIML+
Sbjct: 138 RPVSLNEMDEEQLAEHHRTGEFPTRLLWEDEDSGQEITAAGDKQDKIDRVYIGKLPIMLK 197
Query: 136 SSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA 195
S YC L + L ECPYD+GGYF+INGSEKVLIAQE+ + N V VFKK P+
Sbjct: 198 SKYCILKDLDEDELYGWNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKPLPSPTP 257
Query: 196 YVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGF 255
Y+AE+ S E +R S++ + + ++ + G GQ I +TLPY++++IPI ++FRALG
Sbjct: 258 YIAEIRSALEKGSRLISSMTIKLFAKGDGQRGGFGQTIKSTLPYVKSDIPIAVVFRALGV 317
Query: 256 TADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKY 311
+DEDIL HICYD DTQM+E+L+P +EEAF IQ+++ +IGKRG + +TR+K +++
Sbjct: 318 VSDEDILNHICYDRSDTQMLEMLKPCIEEAFVIQDREVALDFIGKRGNSNTLTRDKRVRH 377
Query: 312 AKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 371
A++I+QKE+LPH+ + ET+KA++ G+++H++L CALGRR DDRDH+G KRLDLAGP
Sbjct: 378 ARDIMQKELLPHISQKEGSETRKAFFLGYMVHKMLQCALGRRECDDRDHFGKKRLDLAGP 437
Query: 372 LLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGN 430
LL LFR LF++LTGDV Y+Q+CV+N ++ NL +K+ T+T GLKYSLATGNWG Q
Sbjct: 438 LLAKLFRNLFKRLTGDVYKYLQRCVENNREFNLTLGVKSTTLTNGLKYSLATGNWGDQKK 497
Query: 431 AAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQ 482
AA + AGVSQVLN T+AST ++ K+AKPRQLHN+ WG++CPAETPEGQ
Sbjct: 498 AAQSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 557
Query: 483 ACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
ACGLVKNLALM Y+T+G+ + PI+EF+ + E E
Sbjct: 558 ACGLVKNLALMCYVTVGTPSDPIIEFMIQRNMEVLE 593
>gi|444313813|ref|XP_004177564.1| hypothetical protein TBLA_0A02460 [Tetrapisispora blattae CBS 6284]
gi|387510603|emb|CCH58045.1| hypothetical protein TBLA_0A02460 [Tetrapisispora blattae CBS 6284]
Length = 1236
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 283/553 (51%), Positives = 374/553 (67%), Gaps = 48/553 (8%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
EDE T E++WAVISA+F EKGLV QQLDSF++F T+Q+I+ E + + + +QH
Sbjct: 23 EDENSPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHT 82
Query: 70 PGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV-- 120
+ F +IY++KPM+ ESDG T L+ + ARLRNLTYS+ L+VDV KR
Sbjct: 83 TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTHE 142
Query: 121 --------IKKGHDGEE--------------VPIMLRSSYCTLYQNSQKALTELGECPYD 158
+K EE +PIMLRS C L ++ L +L ECP+D
Sbjct: 143 AIDMPGRELKYSLIAEESEEDFDAGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFD 202
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GGYFIINGSEKVLIAQE+ + N V VFKK P+ +++AE+ S E +R ST+ V +
Sbjct: 203 MGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHIAEIRSALEKGSRFISTLQVKL 262
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
R GSS + I ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+E+L
Sbjct: 263 YGRE----GSSSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEML 318
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
+P +E+ F IQ+++ +IG+RG +G+ +EK I+YA++ILQKE LPH+ + E++K
Sbjct: 319 KPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGFESRK 378
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
A++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLFRKLT D+ Y+Q+
Sbjct: 379 AFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDIFRYMQR 438
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTY 453
V+ KD N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 439 TVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 498
Query: 454 Y--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ PI
Sbjct: 499 LRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPI 558
Query: 506 LEFLEEWGTENFE 518
+ FL EWG E E
Sbjct: 559 ITFLSEWGMEPLE 571
>gi|50293059|ref|XP_448959.1| hypothetical protein [Candida glabrata CBS 138]
gi|51701949|sp|Q6FLD5.1|RPB2_CANGA RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2
gi|49528272|emb|CAG61929.1| unnamed protein product [Candida glabrata]
Length = 1223
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 285/553 (51%), Positives = 373/553 (67%), Gaps = 48/553 (8%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
E+E T E+ WAVISA+F EKGLV QQLDSF++F T+Q+I+ E + + + +QH
Sbjct: 17 EEENAPITAEDTWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHT 76
Query: 70 PGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR--- 119
Q + F +IY++KPM+ ESDG T L+ + ARLRNLTYS+ L+VDVTKR
Sbjct: 77 TEQDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVTKRTYE 136
Query: 120 -VIKKGHDGE--------------------EVPIMLRSSYCTLYQNSQKALTELGECPYD 158
V G D +PIMLRS C L ++ L +L ECP+D
Sbjct: 137 AVDVPGRDLNYQLIAEESEEDSESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFD 196
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GGYFIINGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R ST+ V +
Sbjct: 197 MGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKL 256
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
R S SS + I ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+E+L
Sbjct: 257 YGRES----SSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEML 312
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
+P +E+ F IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ + E++K
Sbjct: 313 KPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRK 372
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
A++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLFRKLT D+ Y+Q+
Sbjct: 373 AFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQR 432
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTY 453
V+ D N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 433 TVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 492
Query: 454 Y--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ PI
Sbjct: 493 LRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGADPMPI 552
Query: 506 LEFLEEWGTENFE 518
+ FL EWG E E
Sbjct: 553 ITFLSEWGMEPLE 565
>gi|254567802|ref|XP_002491011.1| RNA polymerase II second largest subunit B150, part of central core
[Komagataella pastoris GS115]
gi|238030808|emb|CAY68731.1| RNA polymerase II second largest subunit B150, part of central core
[Komagataella pastoris GS115]
gi|328352458|emb|CCA38857.1| DNA-directed RNA polymerase III subunit C2 [Komagataella pastoris
CBS 7435]
Length = 1227
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 284/556 (51%), Positives = 380/556 (68%), Gaps = 54/556 (9%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH---- 68
++ T E+ W VISA+FEEKGLV QQLDSFDEF + ++Q++V E + + +QH
Sbjct: 9 DDTITTEDCWTVISAFFEEKGLVSQQLDSFDEFMETSIQDLVWEEPRLILDQPAQHTNEK 68
Query: 69 ---NPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV----- 120
N + F +IYLS+P MTE+DG T +F + ARLRNLTYS+P+Y+D+ K +
Sbjct: 69 DNINKRYEIRFGKIYLSRPTMTEADGTTHAMFPQEARLRNLTYSSPVYLDMEKSMFTSID 128
Query: 121 -----------------IKKG-------HDGEEVPIMLRSSYCTLYQNSQKALTELGECP 156
IK G H G +VPIMLRS +C+L + L ++ ECP
Sbjct: 129 DEGNPNATLDWQQVHEPIKDGVEEGNKVHIG-KVPIMLRSKFCSLRTLDEVDLYKMKECP 187
Query: 157 YDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV 216
YD GGYF+INGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R ST+ +
Sbjct: 188 YDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALEKGSRLISTMQI 247
Query: 217 PMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMME 276
+ R KG +G+ I ATLPY++ +IPI+I+FRALG D +IL+HICYD D QM+E
Sbjct: 248 KLYGRED-KG--TGRTIKATLPYVKQDIPIVIVFRALGVVPDGEILQHICYDENDWQMLE 304
Query: 277 LLRPSLEEAFFIQNQQ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
+L+P +EE F IQ+++ +IG+RG A +G+ REK I+YAK+ILQKE+LPH+ + E
Sbjct: 305 MLKPCIEEGFVIQDKEVALDFIGRRGSAALGIRREKRIQYAKDILQKELLPHITQEEGFE 364
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
T+K ++ G++++RLLLCAL R+ +DDRDH+G KRLDLAGPLL LFR LFRKLT ++ Y
Sbjct: 365 TRKTFFLGYMVNRLLLCALERKDQDDRDHFGKKRLDLAGPLLANLFRILFRKLTREIYRY 424
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAST 450
+Q+C++ +D NL A+K+ TIT GLKYSLATGNWG Q A +RAGVSQVLN TY+ST
Sbjct: 425 MQRCIETDRDFNLNLAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 484
Query: 451 FTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAA 502
++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+L+ I+IGS +
Sbjct: 485 LSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLLSGISIGSPS 544
Query: 503 YPILEFLEEWGTENFE 518
PI+ FLEEWG E E
Sbjct: 545 EPIINFLEEWGMEPLE 560
>gi|443919777|gb|ELU39849.1| DNA-directed RNA polymerase II [Rhizoctonia solani AG-1 IA]
Length = 1179
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 285/559 (50%), Positives = 367/559 (65%), Gaps = 79/559 (14%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNP 70
D+ +E TQE+ W +I+++F+EKGLVRQQLDSFDEF QNTMQE+VDESAD+ + QH
Sbjct: 66 DDYDEITQEDCWTIITSFFDEKGLVRQQLDSFDEFVQNTMQELVDESADLILDQSDQHT- 124
Query: 71 GQQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
G ++D F +IYLS+P +TE+DG +F + A PLYVD+TKRV+
Sbjct: 125 GAENDATKRYEIRFGQIYLSRPTITEADGSVVPVFPQEA--------PPLYVDMTKRVLH 176
Query: 123 KGHD--------------------------GEEVPIMLRSSYCTLYQNSQKALTELGECP 156
D G +P+ L S K L +L ECP
Sbjct: 177 GFEDENGETQFRPEGNGLEERADKVWIGKVGRNIPLCLES----------KDLYDLNECP 226
Query: 157 YDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV 216
D+GGYFIINGSEKVLIAQE+M+ NHVYVF K QP+ ++++E+ S E + ST+ V
Sbjct: 227 LDQGGYFIINGSEKVLIAQERMAGNHVYVFAKAQPSPISFLSEIRSAVEKGGKTISTMQV 286
Query: 217 PMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMME 276
M R K + G I A+LPYI+ +IPI ++FRALG T+D DILEHICYD DT M+E
Sbjct: 287 KMFHRNQDK--TLGNVIRASLPYIKNDIPIWVVFRALGVTSDRDILEHICYDRDDTSMLE 344
Query: 277 LLRPSLEEAFFIQNQ--------QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGD 328
+L+P ++E F IQ + +IG RG T G+ +EK ++YA+EILQKEMLPH+ +
Sbjct: 345 MLKPCIDEGFVIQERIVSGQNALDFIGSRGTTTGLNKEKRLRYAQEILQKEMLPHISMAE 404
Query: 329 FCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDV 388
ETKKA++FG++IHRLLL AL RR DDRDH+G KRLDLAGPLL LFR LFRKLT D
Sbjct: 405 GSETKKAFFFGYMIHRLLLAALDRRELDDRDHFGKKRLDLAGPLLASLFRMLFRKLTKD- 463
Query: 389 RSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTY 447
CV++ ++ L+ A+KA TIT GLKYSLATGNWG Q + +AGVSQVLN T+
Sbjct: 464 ------CVESNREFQLRLAVKANTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTF 517
Query: 448 ASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIG 499
AST ++ K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM I++G
Sbjct: 518 ASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVG 577
Query: 500 SAAYPILEFLEEWGTENFE 518
S + P++EFLEEWG E+ E
Sbjct: 578 SLSGPVIEFLEEWGLESLE 596
>gi|172211|gb|AAA68096.1| RNA polymerase II 48 kd subunit [Saccharomyces cerevisiae]
Length = 1224
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 282/553 (50%), Positives = 375/553 (67%), Gaps = 48/553 (8%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
EDE T E++WAVISA+F EKGLV QQLDSF++F T+Q+I+ E + + + +QH
Sbjct: 19 EDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHT 78
Query: 70 PGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR--- 119
+ F +IY++KPM+ ESDG T L+ + ARLRNLTYS+ L+VDV KR
Sbjct: 79 TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYE 138
Query: 120 -------------VIKKGHDGEE--------VPIMLRSSYCTLYQNSQKALTELGECPYD 158
+ ++ D E +PIMLRS C L + ++ L +L ECP+D
Sbjct: 139 AIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFD 198
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GGYFIINGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R ST+ V +
Sbjct: 199 MGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKL 258
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
R GSS + I ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+E+L
Sbjct: 259 YGRE----GSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEML 314
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
+P +E+ F IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ + E++K
Sbjct: 315 KPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRK 374
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
A++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLF+KLT D+ Y+Q+
Sbjct: 375 AFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQR 434
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTY 453
V+ D N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 435 TVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 494
Query: 454 Y--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ PI
Sbjct: 495 LRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPI 554
Query: 506 LEFLEEWGTENFE 518
+ FL EWG E E
Sbjct: 555 ITFLSEWGMEPLE 567
>gi|401623583|gb|EJS41677.1| rpb2p [Saccharomyces arboricola H-6]
Length = 1224
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 284/555 (51%), Positives = 377/555 (67%), Gaps = 52/555 (9%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
EDE T E++WAVISA+F EKGLV QQLDSF++F T+Q+I+ E + + + +QH
Sbjct: 19 EDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHT 78
Query: 70 PGQQSD---------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR- 119
+SD F +IY++KPM+ ESDG T L+ + ARLRNLTYS+ L+VDV KR
Sbjct: 79 --TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRT 136
Query: 120 ---------------VIKKGHDGEE--------VPIMLRSSYCTLYQNSQKALTELGECP 156
+ ++ D E +PIMLRS C L + ++ L +L ECP
Sbjct: 137 YEAVDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECP 196
Query: 157 YDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV 216
+D GGYFIINGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R ST+ V
Sbjct: 197 FDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQV 256
Query: 217 PMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMME 276
+ R GSS + I ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+E
Sbjct: 257 KLYGRE----GSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLE 312
Query: 277 LLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET 332
+L+P +E+ F IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ + E+
Sbjct: 313 MLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFES 372
Query: 333 KKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYV 392
+KA++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLF+KLT D+ Y+
Sbjct: 373 RKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYM 432
Query: 393 QKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTF 451
Q+ V+ D N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST
Sbjct: 433 QRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTL 492
Query: 452 TYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAY 503
++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 493 SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPM 552
Query: 504 PILEFLEEWGTENFE 518
PI+ FL EWG E E
Sbjct: 553 PIITFLSEWGMEPLE 567
>gi|403214331|emb|CCK68832.1| hypothetical protein KNAG_0B03910 [Kazachstania naganishii CBS
8797]
Length = 1220
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 281/553 (50%), Positives = 374/553 (67%), Gaps = 48/553 (8%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
EDE T E++W VIS++F EKGLV QQLDSF++F T+Q+I+ E + + + +QH
Sbjct: 15 EDESAPITAEDSWTVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSRLILEQLAQHT 74
Query: 70 PGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR--- 119
+ F +IY++KPM+ ESDG T L+ + +RLRNLTYS+ L+VDV KR
Sbjct: 75 TEADNISRKYEISFGKIYVTKPMVNESDGVTHALYPQESRLRNLTYSSGLFVDVKKRTYE 134
Query: 120 -------------VIKKGHDGEE--------VPIMLRSSYCTLYQNSQKALTELGECPYD 158
+ ++ D E +PIMLRS C L ++ L +L ECP+D
Sbjct: 135 AIDVPGRDLKYELIAEESEDDSERGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFD 194
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GGYFIINGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R ST+ V +
Sbjct: 195 MGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKL 254
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
R GSS + I ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+E+L
Sbjct: 255 YGRE----GSSSRTIKATLPYIKQDIPIVIIFRALGVIPDGEILEHICYDVNDWQMLEML 310
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
+P +E+ F IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ + E++K
Sbjct: 311 KPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRK 370
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
A++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLLG LF+TLFRKLT D+ Y+Q+
Sbjct: 371 AFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFRYMQR 430
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTY 453
V+ D N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 431 TVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 490
Query: 454 Y--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ PI
Sbjct: 491 LRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSSISVGTDPMPI 550
Query: 506 LEFLEEWGTENFE 518
+ FL EWG E E
Sbjct: 551 ITFLSEWGLEPLE 563
>gi|398365417|ref|NP_014794.3| Rpb2p [Saccharomyces cerevisiae S288c]
gi|2507349|sp|P08518.2|RPB2_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; AltName: Full=B150;
AltName: Full=DNA-directed RNA polymerase II 140 kDa
polypeptide
gi|14278325|pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278336|pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278366|pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex
gi|20150714|pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749617|pdb|1NIK|B Chain B, Wild Type Rna Polymerase Ii
gi|30749738|pdb|1NT9|B Chain B, Complete 12-Subunit Rna Polymerase Ii
gi|34810554|pdb|1PQV|B Chain B, Rna Polymerase Ii-Tfiis Complex
gi|46015416|pdb|1R5U|B Chain B, Rna Polymerase Ii Tfiib Complex
gi|46015781|pdb|1SFO|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965912|pdb|1R9S|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965924|pdb|1R9T|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966108|pdb|1TWA|B Chain B, Rna Polymerase Ii Complexed With Atp
gi|56966122|pdb|1TWC|B Chain B, Rna Polymerase Ii Complexed With Gtp
gi|56966132|pdb|1TWF|B Chain B, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966142|pdb|1TWG|B Chain B, Rna Polymerase Ii Complexed With Ctp
gi|56966152|pdb|1TWH|B Chain B, Rna Polymerase Ii Complexed With 2'datp
gi|58177165|pdb|1WCM|B Chain B, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679445|pdb|1Y1W|B Chain B, Complete Rna Polymerase Ii Elongation Complex
gi|61679462|pdb|1Y77|B Chain B, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679503|pdb|1Y1V|B Chain B, Refined Rna Polymerase Ii-tfiis Complex
gi|61679516|pdb|1Y1Y|B Chain B, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754244|pdb|2B63|B Chain B, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590855|pdb|2B8K|B Chain B, 12-Subunit Rna Polymerase Ii
gi|122920062|pdb|2E2H|B Chain B, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920077|pdb|2E2I|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920092|pdb|2E2J|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921031|pdb|2NVQ|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921067|pdb|2NVT|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921083|pdb|2NVX|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921098|pdb|2NVY|B Chain B, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921110|pdb|2NVZ|B Chain B, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104675|pdb|2JA5|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104690|pdb|2JA6|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104711|pdb|2JA7|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104723|pdb|2JA7|N Chain N, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104735|pdb|2JA8|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387185|pdb|2YU9|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877774|pdb|2R7Z|B Chain B, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172228|pdb|2R92|B Chain B, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172241|pdb|2R93|B Chain B, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613463|pdb|2VUM|B Chain B, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368735|pdb|3CQZ|B Chain B, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983591|pdb|3FKI|B Chain B, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781917|pdb|3GTG|B Chain B, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781930|pdb|3GTJ|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781943|pdb|3GTK|B Chain B, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781956|pdb|3GTL|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781969|pdb|3GTM|B Chain B, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781983|pdb|3GTO|B Chain B, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781996|pdb|3GTP|B Chain B, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782009|pdb|3GTQ|B Chain B, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104512|pdb|3H3V|C Chain C, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839442|pdb|3HOU|B Chain B, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839457|pdb|3HOU|N Chain N, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839472|pdb|3HOV|B Chain B, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839487|pdb|3HOW|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839502|pdb|3HOX|B Chain B, Complete Rna Polymerase Ii Elongation Complex V
gi|254839517|pdb|3HOY|B Chain B, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839532|pdb|3HOZ|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471947|pdb|3I4M|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471962|pdb|3I4N|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618766|pdb|3K1F|B Chain B, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914553|pdb|3K7A|B Chain B, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982476|pdb|3M3Y|B Chain B, Rna Polymerase Ii Elongation Complex C
gi|295982489|pdb|3M4O|B Chain B, Rna Polymerase Ii Elongation Complex B
gi|325053964|pdb|3PO2|B Chain B, Arrested Rna Polymerase Ii Elongation Complex
gi|325053979|pdb|3PO3|B Chain B, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634539|pdb|3QT1|B Chain B, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197457|pdb|3RZD|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197469|pdb|3RZO|B Chain B, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197481|pdb|3S14|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197493|pdb|3S15|B Chain B, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197505|pdb|3S16|B Chain B, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197517|pdb|3S17|B Chain B, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197529|pdb|3S1M|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197541|pdb|3S1N|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197553|pdb|3S1Q|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197565|pdb|3S1R|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197577|pdb|3S2D|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781198|pdb|3S2H|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|353251634|pdb|3J0K|B Chain B, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380837|pdb|4A3C|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546291|pdb|4A3B|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546309|pdb|4A3D|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546326|pdb|4A3E|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546343|pdb|4A3F|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546360|pdb|4A3J|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546377|pdb|4A3K|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546393|pdb|4A3L|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546410|pdb|4A3M|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977880|pdb|4A3G|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977895|pdb|4A3I|B Chain B, Rna Polymerase Ii Binary Complex With Dna
gi|380764980|pdb|4A93|B Chain B, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145447|pdb|4BBR|B Chain B, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145460|pdb|4BBS|B Chain B, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|1293711|gb|AAC49637.1| Rpb2p polymerase [Saccharomyces cerevisiae]
gi|1420379|emb|CAA99357.1| RPB2 [Saccharomyces cerevisiae]
gi|151945769|gb|EDN64010.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|256272775|gb|EEU07746.1| Rpb2p [Saccharomyces cerevisiae JAY291]
gi|259149634|emb|CAY86438.1| Rpb2p [Saccharomyces cerevisiae EC1118]
gi|285815031|tpg|DAA10924.1| TPA: Rpb2p [Saccharomyces cerevisiae S288c]
gi|349581308|dbj|GAA26466.1| K7_Rpb2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296478|gb|EIW07580.1| Rpb2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1224
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 282/553 (50%), Positives = 375/553 (67%), Gaps = 48/553 (8%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
EDE T E++WAVISA+F EKGLV QQLDSF++F T+Q+I+ E + + + +QH
Sbjct: 19 EDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHT 78
Query: 70 PGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR--- 119
+ F +IY++KPM+ ESDG T L+ + ARLRNLTYS+ L+VDV KR
Sbjct: 79 TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYE 138
Query: 120 -------------VIKKGHDGEE--------VPIMLRSSYCTLYQNSQKALTELGECPYD 158
+ ++ D E +PIMLRS C L + ++ L +L ECP+D
Sbjct: 139 AIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFD 198
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GGYFIINGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R ST+ V +
Sbjct: 199 MGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKL 258
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
R GSS + I ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+E+L
Sbjct: 259 YGRE----GSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEML 314
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
+P +E+ F IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ + E++K
Sbjct: 315 KPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRK 374
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
A++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLF+KLT D+ Y+Q+
Sbjct: 375 AFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQR 434
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTY 453
V+ D N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 435 TVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 494
Query: 454 Y--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ PI
Sbjct: 495 LRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPI 554
Query: 506 LEFLEEWGTENFE 518
+ FL EWG E E
Sbjct: 555 ITFLSEWGMEPLE 567
>gi|365758370|gb|EHN00218.1| Rpb2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1224
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 283/555 (50%), Positives = 377/555 (67%), Gaps = 52/555 (9%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
EDE T E++WAVISA+F EKGLV QQLDSF++F T+Q+I+ E + + + +QH
Sbjct: 19 EDERAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHT 78
Query: 70 PGQQSD---------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR- 119
+SD F +IY++KPM+ ESDG T L+ + ARLRNLTYS+ L+VDV KR
Sbjct: 79 --TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRT 136
Query: 120 ---------------VIKKGHDGEE--------VPIMLRSSYCTLYQNSQKALTELGECP 156
+ ++ D E +PIMLRS C L + ++ L +L ECP
Sbjct: 137 YEAVDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECP 196
Query: 157 YDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV 216
+D GGYFIINGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R ST+ V
Sbjct: 197 FDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQV 256
Query: 217 PMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMME 276
+ R GSS + I ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+E
Sbjct: 257 KLYGRE----GSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLE 312
Query: 277 LLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET 332
+L+P +E+ F IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ + E+
Sbjct: 313 MLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFES 372
Query: 333 KKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYV 392
+KA++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPL+ LF+TLF+KLT D+ Y+
Sbjct: 373 RKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLMAQLFKTLFKKLTKDIFRYM 432
Query: 393 QKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTF 451
Q+ V+ D N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST
Sbjct: 433 QRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTL 492
Query: 452 TYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAY 503
++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 493 SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPM 552
Query: 504 PILEFLEEWGTENFE 518
PI+ FL EWG E E
Sbjct: 553 PIITFLSEWGMEPLE 567
>gi|363752349|ref|XP_003646391.1| hypothetical protein Ecym_4538 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890026|gb|AET39574.1| hypothetical protein Ecym_4538 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1222
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 279/553 (50%), Positives = 377/553 (68%), Gaps = 47/553 (8%)
Query: 9 EEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH 68
++D++ T E++W VISA+F EKGLV QQLDSF++F T+Q+++ E + + + +QH
Sbjct: 14 DDDDDAPITAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQH 73
Query: 69 NPGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR-- 119
+ F +IYL+KP MTESDG + ++ + ARLRNLTY++ L+V++ KR
Sbjct: 74 TTESDNISRKYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIKKRTY 133
Query: 120 --------------VIKKGHDGEE-------VPIMLRSSYCTLYQNSQKALTELGECPYD 158
+ ++ D EE VPIMLRS YC L S+ L L ECP+D
Sbjct: 134 EAVDVPGRDLKYEIIQEESEDSEEGKIFIGRVPIMLRSKYCLLDDLSESDLYRLKECPFD 193
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GGYFIINGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R ST+ V +
Sbjct: 194 MGGYFIINGSEKVLIAQERSAGNIVQVFKKSAPSPISHVAEIRSALEKGSRFISTLQVKL 253
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
R GS+ + I ATLPYI+ ++PI+I+FRALG D +ILEHICYD D QM+E+L
Sbjct: 254 YGRE----GSTSRTIKATLPYIKQDVPIVIIFRALGIIPDGEILEHICYDQNDWQMLEML 309
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
+P +EE F IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ + E++K
Sbjct: 310 KPCVEEGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRK 369
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
A++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLFRKLT D+ ++Q+
Sbjct: 370 AFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQR 429
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTY 453
V+ KD NL+ A+KA TIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 430 SVEEAKDFNLKLAVKATTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 489
Query: 454 Y--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ PI
Sbjct: 490 LRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPVPI 549
Query: 506 LEFLEEWGTENFE 518
+ FL EWG E E
Sbjct: 550 ITFLNEWGMEPLE 562
>gi|365984393|ref|XP_003669029.1| hypothetical protein NDAI_0C01250 [Naumovozyma dairenensis CBS 421]
gi|343767797|emb|CCD23786.1| hypothetical protein NDAI_0C01250 [Naumovozyma dairenensis CBS 421]
Length = 1227
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 282/555 (50%), Positives = 375/555 (67%), Gaps = 52/555 (9%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
ED T E++WAVIS++F EKGLV QQLDSF++F T+Q+I+ E + + + +QH
Sbjct: 20 EDANAPITAEDSWAVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHT 79
Query: 70 PGQQSD---------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR- 119
+SD F +IY++KPM+ ESDG T L+ + ARLRNLTYS+ L+VDV KR
Sbjct: 80 --TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRT 137
Query: 120 ---------------VIKKGHDGEE--------VPIMLRSSYCTLYQNSQKALTELGECP 156
+ ++ D E +PIMLRS C L ++ L +L ECP
Sbjct: 138 YEAVDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECP 197
Query: 157 YDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV 216
+D GGYFIINGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R ST+ V
Sbjct: 198 FDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQV 257
Query: 217 PMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMME 276
+ R GSS + + ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+E
Sbjct: 258 KLYGRE----GSSARTVKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLE 313
Query: 277 LLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET 332
+L+P +E+ F IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ + E+
Sbjct: 314 MLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFES 373
Query: 333 KKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYV 392
+KA++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLFRKLT D+ Y+
Sbjct: 374 RKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYM 433
Query: 393 QKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTF 451
Q+ V+ D N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST
Sbjct: 434 QRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTL 493
Query: 452 TYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAY 503
++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 494 SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPM 553
Query: 504 PILEFLEEWGTENFE 518
PI+ FL EWG E E
Sbjct: 554 PIITFLSEWGMEPLE 568
>gi|255717775|ref|XP_002555168.1| KLTH0G02970p [Lachancea thermotolerans]
gi|238936552|emb|CAR24731.1| KLTH0G02970p [Lachancea thermotolerans CBS 6340]
Length = 1220
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 283/552 (51%), Positives = 376/552 (68%), Gaps = 47/552 (8%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
ED+E T E++W VISA+F EKGLV QQLDSF++F T+Q+ + E + + + +QH
Sbjct: 15 EDDEASITAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDSIVEDSTLILEQLAQHT 74
Query: 70 PGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR--- 119
+ F +IYL+KP MTESDG + ++ + ARLRNLTY++ L+V++ KR
Sbjct: 75 TEADNISRKYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIRKRTYE 134
Query: 120 -VIKKGHD------GEE-------------VPIMLRSSYCTLYQNSQKALTELGECPYDE 159
V G D EE VPIMLRS YC L + ++ L +L ECP+D
Sbjct: 135 AVDIPGRDLKYEVIDEESEMSDESKIFIGRVPIMLRSKYCLLDELTESDLYKLKECPFDM 194
Query: 160 GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPML 219
GGYFIINGSEKVLIAQE+ + N V VFKK P+ +++AE+ S E +R ST+ V +
Sbjct: 195 GGYFIINGSEKVLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLY 254
Query: 220 SRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
R GS+ + I ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+ELL+
Sbjct: 255 GRE----GSTNRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLELLK 310
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
P +EE F IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ + E++KA
Sbjct: 311 PCVEEGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKA 370
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLFRKLT D+ ++Q+
Sbjct: 371 FFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRS 430
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
V+ KD NL+ A+KA TIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 431 VEEAKDFNLKLAVKATTITAGLKYALATGNWGEQKKAMTSRAGVSQVLNRYTYSSTLSHL 490
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ PI+
Sbjct: 491 RRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLPII 550
Query: 507 EFLEEWGTENFE 518
FL EWG E E
Sbjct: 551 TFLNEWGMEPLE 562
>gi|366996268|ref|XP_003677897.1| hypothetical protein NCAS_0H02400 [Naumovozyma castellii CBS 4309]
gi|342303767|emb|CCC71550.1| hypothetical protein NCAS_0H02400 [Naumovozyma castellii CBS 4309]
Length = 1224
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 282/553 (50%), Positives = 372/553 (67%), Gaps = 48/553 (8%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
EDE T E+AWAVIS++F EKGLV QQLDSF++F T+Q+I+ E + + + +QH
Sbjct: 19 EDENAPITAEDAWAVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHT 78
Query: 70 PGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
+ F +IY++KPM+ ESDG T L+ + ARLRNLTYS+ L+VDV KR +
Sbjct: 79 TETDNVSRKYEIGFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYE 138
Query: 123 KGH-DGEEV-----------------------PIMLRSSYCTLYQNSQKALTELGECPYD 158
G E+ PIMLRS C L ++ L +L ECP+D
Sbjct: 139 AVDVPGRELKYELIAEESEEESESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFD 198
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GGYFIINGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R ST+ V +
Sbjct: 199 MGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKL 258
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
R GS + I+ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+E+L
Sbjct: 259 YGRE----GSDARTINATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEML 314
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
+P +E+ F IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ + E++K
Sbjct: 315 KPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRK 374
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
A++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLFRKLT D+ Y+Q+
Sbjct: 375 AFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLASLFKTLFRKLTKDIFRYMQR 434
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTY 453
V+ D N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 435 TVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 494
Query: 454 Y--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ PI
Sbjct: 495 LRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPI 554
Query: 506 LEFLEEWGTENFE 518
+ FL EWG E E
Sbjct: 555 ITFLSEWGMEPLE 567
>gi|347828662|emb|CCD44359.1| RPB2, DNA-dependent RNA polymerase II second largest subunit
[Botryotinia fuckeliana]
Length = 1260
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 279/579 (48%), Positives = 376/579 (64%), Gaps = 74/579 (12%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNP 70
+E+ T E+ W VIS++FE KGLV QQLDSFDEF Q TMQE+V+E++ + + Q+NP
Sbjct: 15 EEDAGITAEDCWTVISSFFEAKGLVSQQLDSFDEFVQTTMQELVEENSQLTL---DQNNP 71
Query: 71 GQQSD-----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK- 118
D F I LS+P MTE DG T + + ARLRNLTYS+PLY+++TK
Sbjct: 72 PSSHDNPIALRRYEIKFGTIMLSRPAMTEGDGSTQVMLPQEARLRNLTYSSPLYIEMTKS 131
Query: 119 ------------------------------RVIKKGHDGE----------------EVPI 132
R++ + DG+ ++P+
Sbjct: 132 TQVAVERPVPLNELDDEQEAEMVNGGEHPTRLVWEYEDGDPEGPKGAPLPEQVYIGKLPM 191
Query: 133 MLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN 192
ML+S +C L + L ECPYD+GGYFIINGSEKVLIAQE+ + N V VFKK +
Sbjct: 192 MLKSEFCILKGLDEDELYGWNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPANS 251
Query: 193 KYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRA 252
+Y+AE+ S E +R S++ + + + + G G+ + +TLPYI+ +IPI I+FRA
Sbjct: 252 AVSYLAEIRSALEKGSRLISSLQIKLYDKGDSNRGGFGKTVKSTLPYIKADIPIAIVFRA 311
Query: 253 LGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKM 308
LG +DEDIL HICYD DTQM+E+L+P +EEAF IQ+++ +IGKRG +TR+K
Sbjct: 312 LGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFVIQDREVALDFIGKRGNGTSLTRDKR 371
Query: 309 IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDL 368
IKYA++I+QKE+LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G KRLDL
Sbjct: 372 IKYARDIMQKELLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDL 431
Query: 369 AGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG- 427
AGPLL LFR LFR+LT DV Y+Q+CV+N ++ NL +K+ TIT GLKYSLATGNWG
Sbjct: 432 AGPLLAKLFRNLFRRLTTDVYRYLQRCVENNREFNLTLGVKSTTITNGLKYSLATGNWGD 491
Query: 428 QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETP 479
Q AA + AGVSQVLN T+AST ++ K+AKPRQLHN+ WG++CPAETP
Sbjct: 492 QKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 551
Query: 480 EGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
EGQACGLVKNLALM Y+T+G+ + PI+EF+ + E E
Sbjct: 552 EGQACGLVKNLALMCYVTVGTPSDPIVEFMIQRNMEVLE 590
>gi|154304837|ref|XP_001552822.1| hypothetical protein BC1G_09004 [Botryotinia fuckeliana B05.10]
Length = 1207
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 279/576 (48%), Positives = 376/576 (65%), Gaps = 68/576 (11%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR----PES 66
+E+ T E+ W VIS++FE KGLV QQLDSFDEF Q TMQE+V+E++ + + P S
Sbjct: 15 EEDAGITAEDCWTVISSFFEAKGLVSQQLDSFDEFVQTTMQELVEENSQLTLDQNNPPSS 74
Query: 67 QHNP----GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK---- 118
NP + F I LS+P MTE DG T + + ARLRNLTYS+PLY+++TK
Sbjct: 75 HDNPIALRRYEIKFGTIMLSRPAMTEGDGSTQVMLPQEARLRNLTYSSPLYIEMTKSTQV 134
Query: 119 ---------------------------RVIKKGHDGE----------------EVPIMLR 135
R++ + DG+ ++P+ML+
Sbjct: 135 AVERPVPLNELDDEQEAEMVNGGEHPTRLVWEYEDGDPEGPKGAPLPEQVYIGKLPMMLK 194
Query: 136 SSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA 195
S +C L + L ECPYD+GGYFIINGSEKVLIAQE+ + N V VFKK + +
Sbjct: 195 SEFCILKGLDEDELYGWNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPANSAVS 254
Query: 196 YVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGF 255
Y+AE+ S E +R S++ + + + + G G+ + +TLPYI+ +IPI I+FRALG
Sbjct: 255 YLAEIRSALEKGSRLISSLQIKLYDKGDSNRGGFGKTVKSTLPYIKADIPIAIVFRALGV 314
Query: 256 TADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKY 311
+DEDIL HICYD DTQM+E+L+P +EEAF IQ+++ +IGKRG +TR+K IKY
Sbjct: 315 VSDEDILNHICYDRNDTQMLEMLKPCIEEAFVIQDREVALDFIGKRGNGTSLTRDKRIKY 374
Query: 312 AKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 371
A++I+QKE+LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G KRLDLAGP
Sbjct: 375 ARDIMQKELLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGP 434
Query: 372 LLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGN 430
LL LFR LFR+LT DV Y+Q+CV+N ++ NL +K+ TIT GLKYSLATGNWG Q
Sbjct: 435 LLAKLFRNLFRRLTTDVYRYLQRCVENNREFNLTLGVKSTTITNGLKYSLATGNWGDQKK 494
Query: 431 AAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQ 482
AA + AGVSQVLN T+AST ++ K+AKPRQLHN+ WG++CPAETPEGQ
Sbjct: 495 AASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 554
Query: 483 ACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
ACGLVKNLALM Y+T+G+ + PI+EF+ + E E
Sbjct: 555 ACGLVKNLALMCYVTVGTPSDPIVEFMIQRNMEVLE 590
>gi|156065749|ref|XP_001598796.1| hypothetical protein SS1G_00885 [Sclerotinia sclerotiorum 1980]
gi|154691744|gb|EDN91482.1| hypothetical protein SS1G_00885 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1267
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 278/579 (48%), Positives = 376/579 (64%), Gaps = 74/579 (12%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNP 70
+E+ T E+ W VIS++F+ KGLV QQ+DSFDEF Q TMQE+V+E++ + + Q+NP
Sbjct: 15 EEDAGITAEDCWTVISSFFDAKGLVSQQIDSFDEFVQTTMQELVEENSQLTL---DQNNP 71
Query: 71 GQQSD-----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK- 118
+D F I LS+P MTE DG T + + ARLRNLTYS+PLY+++TK
Sbjct: 72 PSSNDNPIALRRYEIKFGTIMLSRPAMTEGDGSTQVMLPQEARLRNLTYSSPLYIEMTKS 131
Query: 119 ------------------------------RVIKKGHDGE----------------EVPI 132
R++ + DG+ ++P+
Sbjct: 132 TQVAVERPVPLNELDDEQEADLANGGEHPTRLVWEYEDGDPDGAKGGPAPERVYVGKLPM 191
Query: 133 MLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN 192
ML+S YC L + L ECPYD+GGYFIINGSEKVLIAQE+ + N V VFKK
Sbjct: 192 MLKSEYCFLKNCDEDDLYGWNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPANQ 251
Query: 193 KYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRA 252
+Y+AE+ S E +R S++ + + + + G G+ + +TLPYI+ +IPI I+FRA
Sbjct: 252 AVSYLAEIRSALEKGSRLISSLQIKLYDKGDSGRGGFGKTVKSTLPYIKQDIPIAIVFRA 311
Query: 253 LGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKM 308
LG +DEDIL HICYD DTQM+E+L+P +EEAF IQ+++ +IGKRG +TR+K
Sbjct: 312 LGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFVIQDREVALDFIGKRGNGTSLTRDKR 371
Query: 309 IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDL 368
IKYA++I+QKE+LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G KRLDL
Sbjct: 372 IKYARDIMQKELLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDL 431
Query: 369 AGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG- 427
AGPLL LFR LFR+LT DV Y+Q+CV+N ++ NL +K+ TIT GLKYSLATGNWG
Sbjct: 432 AGPLLAKLFRNLFRRLTTDVYRYLQRCVENNREFNLTLGVKSTTITNGLKYSLATGNWGD 491
Query: 428 QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETP 479
Q AA + AGVSQVLN T+AST ++ K+AKPRQLHN+ WG++CPAETP
Sbjct: 492 QKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 551
Query: 480 EGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
EGQACGLVKNLALM Y+T+G+ + PI+EF+ + E E
Sbjct: 552 EGQACGLVKNLALMCYVTVGTPSDPIVEFMIQRNMEVLE 590
>gi|156835986|ref|XP_001642238.1| hypothetical protein Kpol_186p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156112711|gb|EDO14380.1| hypothetical protein Kpol_186p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 1223
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 283/555 (50%), Positives = 375/555 (67%), Gaps = 52/555 (9%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
E+E T E++WAVIS++F EKGLV QQLDSF++F T+Q+I+ E + + + +QH
Sbjct: 16 EEETAPITAEDSWAVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHT 75
Query: 70 PGQQSD---------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR- 119
+SD F +IY++KPM+ ESDG T L+ + +RLRNLTYS+ L+VDV KR
Sbjct: 76 --TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQESRLRNLTYSSGLFVDVNKRT 133
Query: 120 ---VIKKGHDGE--------------------EVPIMLRSSYCTLYQNSQKALTELGECP 156
V G D +PIMLRS C L ++ L +L ECP
Sbjct: 134 YEAVDVPGRDLNYQLIAEESEEDNENDKVFIGRLPIMLRSKNCYLSDATESDLYKLKECP 193
Query: 157 YDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV 216
+D GGYFIINGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R ST+ V
Sbjct: 194 FDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQV 253
Query: 217 PMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMME 276
+ R GSS + I ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+E
Sbjct: 254 KLYGRE----GSSTRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLE 309
Query: 277 LLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET 332
+L+P +E+ F IQ+++ +IG+RG +G+ +EK I+YA++ILQKE LPH+ + E+
Sbjct: 310 MLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGFES 369
Query: 333 KKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYV 392
+KA++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLLG LF+TLFRKLT D+ Y+
Sbjct: 370 RKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFRYM 429
Query: 393 QKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTF 451
Q+ V+ D N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST
Sbjct: 430 QRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTL 489
Query: 452 TYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAY 503
++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 490 SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPM 549
Query: 504 PILEFLEEWGTENFE 518
PI+ FL EWG E E
Sbjct: 550 PIITFLSEWGMEPLE 564
>gi|317033268|ref|XP_001395161.2| DNA-directed RNA polymerase II subunit RPB2 [Aspergillus niger CBS
513.88]
Length = 1231
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 271/554 (48%), Positives = 374/554 (67%), Gaps = 40/554 (7%)
Query: 5 EERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR- 63
E+ +D +E T E+ W VIS++F+ KGLV QQLDSFDEF +TMQE+V+E + +
Sbjct: 9 EDEYYDDMDEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQ 68
Query: 64 ----PESQHNP----GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVD 115
E + +P + F + LS+P +TE DG T + + ARLRNLTY++PLY+
Sbjct: 69 TLPPSEDEVDPVVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLG 128
Query: 116 VTKRVIK------KGHDGEEV-----------PIMLRSSYCTLYQNSQKALTELGECPYD 158
VTK++++ D +++ PIML+S YC L S++AL ECPYD
Sbjct: 129 VTKKIMEGRERLVADRDDDDMAKEETVFIGKMPIMLKSKYCILKDLSEQALYNWNECPYD 188
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GGYFIINGSEKVLIAQE+ + N V VFKK P+ YVAE+ S E +R S + + +
Sbjct: 189 SGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKL 248
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
++ + G G I +TLPY++T+IPI+++FRALG +DEDIL HICYD DT M+E+L
Sbjct: 249 FAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICYDRNDTPMLEML 308
Query: 279 RPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYAKEILQKEMLPHVGTGDFCETK 333
+P +EE F IQ+++ +I KRG++ + E+ ++YA+EI+QKE LPH+ + ET+
Sbjct: 309 KPCIEEGFVIQDREVALDFIAKRGSSQSSMNHERRVRYAREIMQKEFLPHISQSEGSETR 368
Query: 334 KAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQ 393
KA++ G+++HRLL CALGRR DDRDH+G KRLDLAGPLL LFR LF ++T D++ YVQ
Sbjct: 369 KAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQ 428
Query: 394 KCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFT 452
+CV+ +++ L IKA T+TGGLKY+LATGNWG Q AA +AGVSQVL+ TYAST +
Sbjct: 429 RCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLS 488
Query: 453 YY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYP 504
+ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YIT+G+ + P
Sbjct: 489 HLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEP 548
Query: 505 ILEFLEEWGTENFE 518
I++F+ + E E
Sbjct: 549 IIDFMIQRNMEVLE 562
>gi|308798899|ref|XP_003074229.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
gi|116000401|emb|CAL50081.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
Length = 999
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 262/398 (65%), Positives = 310/398 (77%), Gaps = 14/398 (3%)
Query: 133 MLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN 192
MLRS YC+L+ ++ K LTELGECPYDEGGYF+INGSEKVLIAQE+MSTNHVYVF+K+QP+
Sbjct: 1 MLRSDYCSLHGHTDKELTELGECPYDEGGYFVINGSEKVLIAQERMSTNHVYVFEKKQPS 60
Query: 193 KYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRA 252
K+ + AE S E +R S+ + + K I TLPYIRT+IPI ++FRA
Sbjct: 61 KFMWQAECRSQPERGSRGASSCVMRQMHAVGTKDAPGP--IRCTLPYIRTDIPIFVVFRA 118
Query: 253 LGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKM 308
LGF AD+DILEHICYD D +MME+LRPS+EEAF IQ+Q+ +IGKRG+ VGV+REK
Sbjct: 119 LGFVADKDILEHICYDLADNEMMEMLRPSIEEAFVIQSQEVALDFIGKRGSAVGVSREKR 178
Query: 309 IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDL 368
IKYAKEILQKE+LPHVG + CETKKAY+ G++IHRLLLC+LGRR EDDRDHYGNKRLDL
Sbjct: 179 IKYAKEILQKELLPHVGVREDCETKKAYFLGYMIHRLLLCSLGRRPEDDRDHYGNKRLDL 238
Query: 369 AGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQ 428
GPLL LFR LFRKLT DVR Y Q+C+D+GK++ LQ AIKAKTIT GLKYSLATGNWG
Sbjct: 239 GGPLLAQLFRQLFRKLTKDVRLYCQRCIDSGKEIQLQLAIKAKTITQGLKYSLATGNWGS 298
Query: 429 GNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPE 480
A RAGVSQVLN L+Y+ST ++ KLAKPRQLHNS WGM+CPAETPE
Sbjct: 299 QGAQDIRAGVSQVLNRLSYSSTLSHLRRINSPIGREGKLAKPRQLHNSLWGMICPAETPE 358
Query: 481 GQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GQA GLVKNLALM +++GS + PILEFL+EW EN E
Sbjct: 359 GQAVGLVKNLALMALVSVGSPSEPILEFLDEWTMENLE 396
>gi|45198922|ref|NP_985951.1| AFR404Cp [Ashbya gossypii ATCC 10895]
gi|51701974|sp|Q753Q4.1|RPB2_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2
gi|44984951|gb|AAS53775.1| AFR404Cp [Ashbya gossypii ATCC 10895]
gi|374109181|gb|AEY98087.1| FAFR404Cp [Ashbya gossypii FDAG1]
Length = 1222
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 278/545 (51%), Positives = 372/545 (68%), Gaps = 47/545 (8%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS-- 74
T E++W VISA+F EKGLV QQLDSF++F T+Q+++ E + + + +QH +
Sbjct: 22 TAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTEADNIS 81
Query: 75 -----DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR---------- 119
F +IYL+KP MTESDG + ++ + ARLRNLTY++ L+V++ KR
Sbjct: 82 RKYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIKKRTYEAVDIPGR 141
Query: 120 ------VIKKGHDGEE-------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIIN 166
+ ++ D EE VPIMLRS YC L S+ L L ECP+D GGYFIIN
Sbjct: 142 DLKYEIIQEESEDTEEGKIFIGRVPIMLRSKYCLLDDLSESDLYRLKECPFDMGGYFIIN 201
Query: 167 GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKG 226
GSEKVLIAQE+ + N V VFKK P+ +++AE+ S E +R ST+ V + R
Sbjct: 202 GSEKVLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGRE---- 257
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
GS+ + I ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+E+L+P +EE F
Sbjct: 258 GSTSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDQNDWQMLEMLKPCVEEGF 317
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ + E++KA++ G++I
Sbjct: 318 VIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMI 377
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLFRKLT D+ ++Q+ V+ KD
Sbjct: 378 NRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDF 437
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------- 454
NL+ A+KA TIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 438 NLKLAVKATTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPI 497
Query: 455 -LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ PI+ FL EWG
Sbjct: 498 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPVPIITFLNEWG 557
Query: 514 TENFE 518
E E
Sbjct: 558 MEPLE 562
>gi|367005628|ref|XP_003687546.1| hypothetical protein TPHA_0J02910 [Tetrapisispora phaffii CBS 4417]
gi|357525850|emb|CCE65112.1| hypothetical protein TPHA_0J02910 [Tetrapisispora phaffii CBS 4417]
Length = 1224
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 281/555 (50%), Positives = 374/555 (67%), Gaps = 52/555 (9%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
EDE + E++W VIS++F EKGLV QQLDSF++F T+Q+I+ E + + + +QH
Sbjct: 17 EDENAPISAEDSWTVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHT 76
Query: 70 PGQQSD---------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV 120
+SD F +IY++KPM+ ESDG T L+ + ARLRNLTYS+ L+VDV KR
Sbjct: 77 --TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVNKRT 134
Query: 121 IKKGH-DGEEV-----------------------PIMLRSSYCTLYQNSQKALTELGECP 156
+ G E+ P+MLRS C L ++ L +L ECP
Sbjct: 135 YEATDVPGRELKYNLIAEESEEDSENDKVFIGRLPVMLRSKNCYLSDATESDLYKLKECP 194
Query: 157 YDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV 216
+D GGYFIINGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R ST+ V
Sbjct: 195 FDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQV 254
Query: 217 PMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMME 276
+ R S SS + I ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+E
Sbjct: 255 KLYGRES----SSTRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLE 310
Query: 277 LLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET 332
+L+P +E+ F IQ+++ +IG+RG +G+ +EK I+YA++ILQKE LPH+ + E+
Sbjct: 311 MLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGFES 370
Query: 333 KKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYV 392
+KA++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLLG LF+TLFRKLT D+ Y+
Sbjct: 371 RKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFRYM 430
Query: 393 QKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTF 451
Q+ V+ D N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST
Sbjct: 431 QRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMTSRAGVSQVLNRYTYSSTL 490
Query: 452 TYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAY 503
++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 491 SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPM 550
Query: 504 PILEFLEEWGTENFE 518
PI+ FL EWG E E
Sbjct: 551 PIITFLSEWGMEPLE 565
>gi|429964497|gb|ELA46495.1| hypothetical protein VCUG_02039 [Vavraia culicis 'floridensis']
Length = 1194
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 272/533 (51%), Positives = 371/533 (69%), Gaps = 37/533 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E T+E+ W IS++F++ GLVRQQLDSFDEF + TMQEI+DE+ + + +S + G++S
Sbjct: 3 EITEEDCWTAISSHFDQYGLVRQQLDSFDEFIETTMQEIIDENNTLIV--QSIPSAGKES 60
Query: 75 ------DFAEIYLSKP-MMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
F +IY+SKP ++TE DG+T TLF ARLR+LTY+ PLYVDVTK V +
Sbjct: 61 VQKIILKFGQIYISKPPVITEQDGKTNTLFPCEARLRDLTYACPLYVDVTKSVAENEESD 120
Query: 128 EE---------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKM 178
+ VP+MLRSS C L+ S K LTELGECPYD+GGYFIINGSEKVLIAQE+M
Sbjct: 121 DHFYRQVPIGLVPVMLRSSCCILHGLSDKNLTELGECPYDQGGYFIINGSEKVLIAQERM 180
Query: 179 STNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLP 238
+TN V+VF+K + Y + AE+ S + ++ PS + V ++ +T + + ATLP
Sbjct: 181 ATNVVHVFEK-SVSTYTHYAEIRSAPQKGSKTPSALIVKLVKKTETEF-----LLRATLP 234
Query: 239 YIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YI 294
+R +IP+I+++RALGF +D++I+EH+ YD D +M++++RPS+EEAF IQ+Q YI
Sbjct: 235 GVRQDIPVIVIYRALGFVSDKEIMEHLIYDPNDKEMLQVIRPSIEEAFVIQDQNVALDYI 294
Query: 295 GKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
GKR A G REK I++AK+IL +E LPH+G FCET+KA++FG++I RLL CA+ R
Sbjct: 295 GKRSAPAGSPREKRIQFAKDILTREFLPHIGDKQFCETRKAFFFGYMIQRLLNCAMKRVT 354
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTIT 414
DDRDHYG KR+DLAGPLL LF+ LFRKL + ++QKC++N +D N+ +K IT
Sbjct: 355 PDDRDHYGKKRMDLAGPLLAQLFKVLFRKLCQETIKHMQKCIENKRDFNIALGLKTSIIT 414
Query: 415 GGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQL 465
G +YSLATGNWG Q A T+AGV+QVLN + ST ++ KLAKPRQL
Sbjct: 415 QGFRYSLATGNWGEQARAMQTKAGVAQVLNRYNFISTLSHLRRVNSPMGREGKLAKPRQL 474
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
HN+ WGM+CPAETPEGQACGLVKNL+L+ YI++ ++E LEE+G ++ E
Sbjct: 475 HNTHWGMVCPAETPEGQACGLVKNLSLLAYISVNHPIEGVVELLEEFGLKSLE 527
>gi|440493525|gb|ELQ75984.1| RNA polymerase II, second largest subunit, partial
[Trachipleistophora hominis]
Length = 1381
Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust.
Identities = 271/533 (50%), Positives = 373/533 (69%), Gaps = 37/533 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E T+E+ W IS++F++ GLVRQQLDSF+EF + TMQEI+DE+ + + +S + G++S
Sbjct: 193 EITEEDCWTAISSHFDQYGLVRQQLDSFNEFIETTMQEIIDENNTLIV--QSIPSAGKES 250
Query: 75 ------DFAEIYLSKP-MMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
F +IY+SKP ++TE DG+T+TLF ARLR+LTY+ PLYVDVTK V++
Sbjct: 251 VQKIILKFGQIYISKPPVITEQDGKTSTLFPCEARLRDLTYACPLYVDVTKSVVENEESD 310
Query: 128 EE---------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKM 178
+ VP+MLRSS C L+ S K LTELGECPYD+GGYF+INGSEKVLIAQE+M
Sbjct: 311 DHFYRQVPIGLVPVMLRSSCCILHGLSDKNLTELGECPYDQGGYFVINGSEKVLIAQERM 370
Query: 179 STNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLP 238
+TN V+VF+K Y + AE+ S + ++ PS + V ++ +T + + ATLP
Sbjct: 371 ATNVVHVFEKSLAT-YTHYAEIRSAPQKGSKTPSALIVKLVKKTETEF-----LLRATLP 424
Query: 239 YIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YI 294
+R +IP+I+++RALGF +D++I+EH+ YD D +M++++RPS+EEAF IQ+Q YI
Sbjct: 425 GVRQDIPVIVIYRALGFVSDKEIMEHLIYDPNDKEMLQVIRPSIEEAFVIQDQNVALDYI 484
Query: 295 GKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
GKR A G REK I++AK+IL +E LPH+G FCET+KA++FG++I RLL CA+ R +
Sbjct: 485 GKRSAPAGSPREKRIQFAKDILIREFLPHIGDKQFCETRKAFFFGYMIQRLLNCAMKRVS 544
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTIT 414
DDRDHYG KR+DLAGPLL LF+ LFRKL + ++QKC++N +D N+ +K IT
Sbjct: 545 PDDRDHYGKKRMDLAGPLLAQLFKVLFRKLCQETIKHMQKCIENKRDFNIALGLKTSIIT 604
Query: 415 GGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQL 465
G +YSLATGNWG Q A T+AGV+QVLN + ST ++ KLAKPRQL
Sbjct: 605 QGFRYSLATGNWGEQSRAMQTKAGVAQVLNRYNFISTLSHLRRVNSPMGREGKLAKPRQL 664
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
HN+ WGM+CPAETPEGQACGLVKNL+L+ YI++ I+E LEE+G ++ E
Sbjct: 665 HNTHWGMVCPAETPEGQACGLVKNLSLLAYISVNHPIEGIVELLEEFGLKSLE 717
>gi|134110814|ref|XP_775871.1| hypothetical protein CNBD2790 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258537|gb|EAL21224.1| hypothetical protein CNBD2790 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1245
Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust.
Identities = 273/560 (48%), Positives = 374/560 (66%), Gaps = 51/560 (9%)
Query: 4 EEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR 63
+EE+ + DE+E +QE+ W VI+++FEEKGLVRQQL+SF+EF +NTMQEIVD+ + + +
Sbjct: 36 DEEKYDVDEDEPISQEDYWTVINSFFEEKGLVRQQLESFNEFIENTMQEIVDDHSRLTLD 95
Query: 64 PESQHN--PGQQS-----DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV 116
+Q+ G ++ F +IYL++ TE DG T LF + ARLRNLTYSAPLYVD+
Sbjct: 96 QFTQYTGVAGDETRRYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDI 155
Query: 117 TKRVIKK---------------GHDGE------------EVPIMLRSSYCTLYQNSQKAL 149
KR + G DGE +VP+M+RS++C L+
Sbjct: 156 KKRTLTASGVDDPVEADWQPAVGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQC 215
Query: 150 TELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNR 209
E+GECPYD+GGYFII+GSEKVLIAQE+M+TNHV+VF K P ++ Y AE+ S E R
Sbjct: 216 HEIGECPYDQGGYFIISGSEKVLIAQERMATNHVFVFLKAAPARFTYFAEINSQKEKGGR 275
Query: 210 PPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDF 269
+ V M +R S G++G I +LPY + +IP++++FRALG D D+L HIC+
Sbjct: 276 VANHTEVRMYARAS---GTTGGVIRVSLPYTKVDIPLVVVFRALGIVPDRDVLSHICFGA 332
Query: 270 QDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVG 325
+D ++E+L+PS+EE+F +Q++ +IG+RG R + + A +IL KE LPHV
Sbjct: 333 EDEALLEMLQPSIEESFAVQDRDTALDFIGRRGQHEKAPRAQRQRAAFDILHKEFLPHVS 392
Query: 326 TGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLT 385
T + E+KKAY+ G+++HRL + ALGR+ DDRDH+GNKRLDLAGPL+ +F +F KL
Sbjct: 393 TAEGFESKKAYFLGYMVHRLCMAALGRKELDDRDHFGNKRLDLAGPLMAEMFNVVFGKLR 452
Query: 386 GDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCL 445
D+ Y++KCV+ K+ L AI+ TIT GLKY+LATGNWG+ + TRAGVSQVLN
Sbjct: 453 EDMYRYLKKCVEQNKEFALNMAIRPNTITDGLKYALATGNWGKRD--NTRAGVSQVLNRY 510
Query: 446 TYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 497
T+AST ++ K AKPRQLHN+ WGM+CPAETPEG ACGLVKNLALM YI+
Sbjct: 511 TFASTLSHLRRTNTPIGRDSKAAKPRQLHNTHWGMVCPAETPEGSACGLVKNLALMSYIS 570
Query: 498 IGSAAYPILEFLEEWGTENF 517
+GS + P++EFLEEWG E+
Sbjct: 571 VGSYSAPVMEFLEEWGLEDL 590
>gi|406864058|gb|EKD17104.1| DNA-directed RNA polymerase II subunit RPB2 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 1266
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 277/571 (48%), Positives = 369/571 (64%), Gaps = 69/571 (12%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR----PESQHNP-- 70
T E+ W VIS++FE KGLV QQ+DSFDEF TMQE+V+E++ + + P + NP
Sbjct: 28 TAEDCWMVISSFFEAKGLVSQQVDSFDEFVSTTMQELVEENSQLTLDQNNPPSADENPIA 87
Query: 71 --GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK---------- 118
+ F + LS+P MTE DG T + + ARLRNLTYS+PLY+++TK
Sbjct: 88 LRRYEIKFGTVLLSRPAMTEGDGTTQVMLPQEARLRNLTYSSPLYLEMTKNVSVAVERNV 147
Query: 119 ---------------------RVIKKGHDGEE-----------------VPIMLRSSYCT 140
R++ + DG E +PIML+S YC
Sbjct: 148 PLNELDDEQEAEMAATGIHPTRLVWEDEDGREAGPDKIEPTPDRVFIGKLPIMLKSKYCI 207
Query: 141 LYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEV 200
L + L ECPYD+GGYFIINGSEKVLIAQE+ + N V VF+K P+ YVAE+
Sbjct: 208 LKDLDEDDLYAWNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFQKSLPSPTPYVAEI 267
Query: 201 CSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADED 260
S E +R S + + + S+ G GQ I +TLPYIR ++PI ++FRALG +DED
Sbjct: 268 RSALEKGSRLISQMSIKLFSKGDGGRGGFGQTIKSTLPYIRADVPIAVVFRALGVVSDED 327
Query: 261 ILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEIL 316
IL HICYD DTQM+E+L+P +EEAF IQ+++ +IGKRG +TR+K +KYA++I+
Sbjct: 328 ILNHICYDRNDTQMLEMLKPCIEEAFVIQDREVALDFIGKRGQNSTLTRDKRVKYARDIM 387
Query: 317 QKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 376
QKE+LPH+ + ET+KA++ G+++H++L CALGRR DDRDH+G KRLDLAGPLL L
Sbjct: 388 QKELLPHISQSEGSETRKAFFLGYMVHKMLQCALGRRETDDRDHFGKKRLDLAGPLLAKL 447
Query: 377 FRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTR 435
FR LFR+LT DV Y++ CV+N K+ NL +KA T+T GLKYSLATGNWG Q AA +
Sbjct: 448 FRGLFRRLTSDVYKYLKLCVENNKEFNLALGVKATTMTNGLKYSLATGNWGDQKKAASST 507
Query: 436 AGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLV 487
AGVSQVLN T++ST ++ K+AKPRQLHN+ WG++CPAETPEGQACGLV
Sbjct: 508 AGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLV 567
Query: 488 KNLALMVYITIGSAAYPILEFLEEWGTENFE 518
KNLALM Y+T+G+ + PI+EF+ + E E
Sbjct: 568 KNLALMCYVTVGTPSDPIIEFMIQRNMEVLE 598
>gi|317155939|ref|XP_001825469.2| DNA-directed RNA polymerase II subunit RPB2 [Aspergillus oryzae
RIB40]
Length = 1221
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 271/556 (48%), Positives = 370/556 (66%), Gaps = 54/556 (9%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR-----PESQ 67
EE T E+ W VIS++F+ KGLV QQLDSFDEF +TMQE+V+E + + E +
Sbjct: 2 EEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPDEDE 61
Query: 68 HNP----GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKK 123
+P + F + LS+P +TE DG T + + ARLRNLTY++PLY+ +TKR++
Sbjct: 62 VDPVVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIM-- 119
Query: 124 GHDGEE---------------------------VPIMLRSSYCTLYQNSQKALTELGECP 156
+G E VPIML+S YC L S++AL ECP
Sbjct: 120 --EGRERSVADRDDEEIEEDEDRKAQETVFIGKVPIMLKSKYCILKDLSEQALYNWNECP 177
Query: 157 YDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV 216
YD GGYFIINGSEKVLIAQE+ + N V VFKK P+ YVAE+ S E +R S + +
Sbjct: 178 YDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSL 237
Query: 217 PMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMME 276
+ ++ + G G I +TLPY++T+IPI+++FRALG +DEDIL HICYD DT M+E
Sbjct: 238 KLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICYDRNDTPMLE 297
Query: 277 LLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
+L+P +EE F IQ+++ +I KRG++ + E+ ++YA+EI+QKE+LPH+ + E
Sbjct: 298 MLKPCIEEGFVIQDREVALDFIAKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSE 357
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
T+KA++ G+++HRLL CALGRR DDRDH+G KRLDLAGPLL LFR LF ++T D++ Y
Sbjct: 358 TRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRY 417
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAST 450
VQ+CV+ +++ L IKA T+TGGLKY+LATGNWG Q AA +AGVSQVL+ TYAST
Sbjct: 418 VQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAKAGVSQVLSRYTYAST 477
Query: 451 FTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAA 502
++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM Y+T+G+ +
Sbjct: 478 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPS 537
Query: 503 YPILEFLEEWGTENFE 518
PI++F+ + E E
Sbjct: 538 EPIIDFMIQRNMEVLE 553
>gi|50303683|ref|XP_451784.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640916|emb|CAH02177.1| KLLA0B05577p [Kluyveromyces lactis]
Length = 1221
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 276/553 (49%), Positives = 374/553 (67%), Gaps = 48/553 (8%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
++EE + E++W VISA+F EKGLV QQLDSF++F T+Q+++ E + + + +QH
Sbjct: 13 DEEEAAISAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHT 72
Query: 70 PGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
+ F +IYL+KP MTESDG + ++ + ARLRNLTY++ L+V++ KR +
Sbjct: 73 TETDNISRKYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIQKRTYQ 132
Query: 123 K----GHDGE--------------------EVPIMLRSSYCTLYQNSQKALTELGECPYD 158
G D + VPIMLRS YC L ++ L L ECP+D
Sbjct: 133 AIDIPGRDLKYEIITEESEENEENNKIFIGRVPIMLRSKYCLLDDLTESDLYRLKECPFD 192
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GGYFIINGSEKVLIAQE+ + N V VFKK P+ +++AE+ S E +R ST+ V +
Sbjct: 193 MGGYFIINGSEKVLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKL 252
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
R GS+ + I ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+E+L
Sbjct: 253 YGRE----GSTSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEML 308
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
+P +EE F IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ + E++K
Sbjct: 309 KPCVEEGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRK 368
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
A++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLFRKLT D+ ++Q+
Sbjct: 369 AFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQR 428
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTY 453
V+ KD NL+ A+KA TIT GLKY+LATGNWG Q + +RAGVSQVLN TY+ST ++
Sbjct: 429 SVEEAKDFNLKLAVKATTITAGLKYALATGNWGEQKKSMSSRAGVSQVLNRYTYSSTLSH 488
Query: 454 Y--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ PI
Sbjct: 489 LRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLPI 548
Query: 506 LEFLEEWGTENFE 518
+ FL EWG E E
Sbjct: 549 ITFLNEWGMEPLE 561
>gi|121709250|ref|XP_001272355.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus clavatus NRRL
1]
gi|119400504|gb|EAW10929.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus clavatus NRRL
1]
Length = 1257
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 277/582 (47%), Positives = 373/582 (64%), Gaps = 70/582 (12%)
Query: 5 EERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDES------- 57
EE +D EE T E+ W VIS++F+ KGLV QQLDSFDEF +TMQE+V+E
Sbjct: 9 EEEFYDDMEEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFVSSTMQELVEEQGQVTLDQ 68
Query: 58 ----ADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
AD E+ P + F + LS+P +TE DG T + + ARLRNLTY++PLY
Sbjct: 69 TLPPADDEVDPVVLRR--YELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLY 126
Query: 114 VDVTKRV-------IKKGHDGEEVP----------------------------------- 131
+ +TKR+ I D E VP
Sbjct: 127 LGITKRIMEGRERLIADREDDETVPDADEDRKARGTYLQWEQKELPADQAKEETVFIGKM 186
Query: 132 -IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
IML+S YC L S++AL ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK
Sbjct: 187 PIMLKSKYCILKDLSEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAP 246
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILF 250
P+ YVAE+ S E +R S + + + ++ + G G I +TLPY++T+IPI+++F
Sbjct: 247 PSPTPYVAEIRSAVEKGSRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVF 306
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTR 305
RALG +DEDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ +
Sbjct: 307 RALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSSMNH 366
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
E+ ++YA+EI+QKE+LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KR
Sbjct: 367 ERRVRYAREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKR 426
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGN 425
LDLAGPLL LFR LF ++T D++ YVQ+CV+ +++ L IKA T+TGGLKY+LATGN
Sbjct: 427 LDLAGPLLANLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGN 486
Query: 426 WG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPA 476
WG Q AA ++AGVSQVL+ TY+ST ++ K+AKPRQLHN+ WG++CPA
Sbjct: 487 WGEQKKAASSKAGVSQVLSRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPA 546
Query: 477 ETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
ETPEGQACGLVKNLALM YIT+G+ + PI++F+ + E E
Sbjct: 547 ETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 588
>gi|405120140|gb|AFR94911.1| DNA-directed RNA polymerase II large subunit [Cryptococcus
neoformans var. grubii H99]
Length = 1245
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 271/560 (48%), Positives = 373/560 (66%), Gaps = 51/560 (9%)
Query: 4 EEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR 63
+EE+ + D++E +QE+ W VI+++FEEKGLVRQQL+SF+EF +NTMQEIVD+ + + +
Sbjct: 36 DEEKYDVDDDEPISQEDYWTVINSFFEEKGLVRQQLESFNEFIENTMQEIVDDHSRLTLD 95
Query: 64 PESQHN--PGQQS-----DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV 116
+Q+ G ++ F +IYL++ TE DG T LF + ARLRNLTYSAPLYVD+
Sbjct: 96 QFTQYTGVAGDETRRYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDI 155
Query: 117 TKRVIKK---------------GHDGE------------EVPIMLRSSYCTLYQNSQKAL 149
KR + G DGE +VP+M+RS++C L+
Sbjct: 156 KKRTLTASGVDDPVEADWQPAVGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQC 215
Query: 150 TELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNR 209
E+GECPYD+GGYFII+GSEKVLIAQE+M+TNHV+VF K P ++ Y AE+ S E R
Sbjct: 216 HEIGECPYDQGGYFIISGSEKVLIAQERMATNHVFVFLKAAPARFTYFAEINSQKEKGGR 275
Query: 210 PPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDF 269
+ V M +R S G++G I +LPY + +IP++++FRALG D D+L HIC+
Sbjct: 276 VANHTEVRMYARAS---GTTGGVIRVSLPYTKVDIPLVVVFRALGIVPDRDVLSHICFGA 332
Query: 270 QDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVG 325
+D ++E+L+PS+EE+F +Q++ +IG+RG R + + A +IL KE LPHV
Sbjct: 333 EDEALLEMLQPSIEESFAVQDRDTALDFIGRRGQHEKAPRAQRQRAAFDILHKEFLPHVS 392
Query: 326 TGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLT 385
T + E+KKAY+ G+++HRL + ALGR+ DDRDH+GNKRLDLAGPL+ +F +F KL
Sbjct: 393 TAEGFESKKAYFLGYMVHRLCMAALGRKELDDRDHFGNKRLDLAGPLMAEMFNVVFGKLR 452
Query: 386 GDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCL 445
D+ Y++KCV+ K+ L AI+ TIT GLKY+LATGNWG+ + TRAGVSQVLN
Sbjct: 453 EDMYRYLKKCVEQNKEFALNMAIRPNTITDGLKYALATGNWGKRD--NTRAGVSQVLNRY 510
Query: 446 TYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 497
T+ ST ++ K AKPRQLHN+ WGM+CPAETPEG ACGLVKNLALM YI+
Sbjct: 511 TFTSTLSHLRRTNTPIGRDSKAAKPRQLHNTHWGMVCPAETPEGSACGLVKNLALMSYIS 570
Query: 498 IGSAAYPILEFLEEWGTENF 517
+GS + P++EFLEEWG E+
Sbjct: 571 VGSYSAPVMEFLEEWGLEDL 590
>gi|238498864|ref|XP_002380667.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus flavus
NRRL3357]
gi|83774211|dbj|BAE64336.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220693941|gb|EED50286.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus flavus
NRRL3357]
gi|391868073|gb|EIT77296.1| RNA polymerase II, second largest subunit [Aspergillus oryzae
3.042]
Length = 1254
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 273/578 (47%), Positives = 374/578 (64%), Gaps = 64/578 (11%)
Query: 5 EERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR- 63
E+ +D EE T E+ W VIS++F+ KGLV QQLDSFDEF +TMQE+V+E + +
Sbjct: 9 EDEFYDDMEEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQ 68
Query: 64 ----PESQHNP----GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVD 115
E + +P + F + LS+P +TE DG T + + ARLRNLTY++PLY+
Sbjct: 69 TLPPDEDEVDPVVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLG 128
Query: 116 VTKRVIK-----------------------------------KGHDGEE------VPIML 134
+TKR+++ EE VPIML
Sbjct: 129 ITKRIMEGRERSVADRDDEEIEEDEDRKARGTYLQWEQKELPADQAKEETVFIGKVPIML 188
Query: 135 RSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKY 194
+S YC L S++AL ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK P+
Sbjct: 189 KSKYCILKDLSEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPT 248
Query: 195 AYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALG 254
YVAE+ S E +R S + + + ++ + G G I +TLPY++T+IPI+++FRALG
Sbjct: 249 PYVAEIRSAVEKGSRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRALG 308
Query: 255 FTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMI 309
+DEDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + E+ +
Sbjct: 309 VVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSSMNHERRV 368
Query: 310 KYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLA 369
+YA+EI+QKE+LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KRLDLA
Sbjct: 369 RYAREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLA 428
Query: 370 GPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-Q 428
GPLL LFR LF ++T D++ YVQ+CV+ +++ L IKA T+TGGLKY+LATGNWG Q
Sbjct: 429 GPLLANLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQ 488
Query: 429 GNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPE 480
AA +AGVSQVL+ TYAST ++ K+AKPRQLHN+ WG++CPAETPE
Sbjct: 489 KKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPE 548
Query: 481 GQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GQACGLVKNLALM Y+T+G+ + PI++F+ + E E
Sbjct: 549 GQACGLVKNLALMCYVTVGTPSEPIIDFMIQRNMEVLE 586
>gi|326475036|gb|EGD99045.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton tonsurans CBS
112818]
Length = 1258
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 275/574 (47%), Positives = 372/574 (64%), Gaps = 68/574 (11%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR---PESQHN 69
EE T E+ W VISA+FE KGLV QQLDSFDEF TMQE+V+E + + P S
Sbjct: 16 EEGITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDE 75
Query: 70 PGQ------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK- 122
P + F + L++P MTE DG T+ + + ARLRNLTY++PLY+ ++K++++
Sbjct: 76 PDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIMEG 135
Query: 123 -------------------------KG------------HDGEE-------VPIMLRSSY 138
+G + EE +PIML+S Y
Sbjct: 136 RERLLSERDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKY 195
Query: 139 CTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVA 198
C L ++AL ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK P+ YVA
Sbjct: 196 CILKDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVA 255
Query: 199 EVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTAD 258
E+ S E +R S + + +LS+ + G G I +TLPYI+T+IPI+++FRALG +D
Sbjct: 256 EIRSAVEKGSRILSQLSIKLLSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSD 315
Query: 259 EDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYAK 313
EDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + + +EK ++YA+
Sbjct: 316 EDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPMSMNQEKRVRYAR 375
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
+I+QKE LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KRLDLAGPLL
Sbjct: 376 DIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLL 435
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAA 432
LFR LF +LT D+ YVQ+CV+ G+ + L +KA T+TGGLKY+LATGNWG Q AA
Sbjct: 436 ANLFRVLFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAA 495
Query: 433 GTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQAC 484
++AGVSQVLN TYAST ++ K+AKPRQLHN+ WG++CPAETPEGQAC
Sbjct: 496 SSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQAC 555
Query: 485 GLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GLVKNLALM IT+G+ + PI++F+ + E E
Sbjct: 556 GLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLE 589
>gi|261196850|ref|XP_002624828.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239596073|gb|EEQ78654.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
Length = 1258
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 273/575 (47%), Positives = 370/575 (64%), Gaps = 67/575 (11%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR-----PE 65
D++E T E+ W VIS++FE KGLV QQLDSFDEF TMQE+V+E + + E
Sbjct: 15 DQDEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPSE 74
Query: 66 SQHNP----GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVI 121
+ +P + F + L++P MTE DG T+ + + ARLRNLTY++PLY+ +TKRV
Sbjct: 75 DEIDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 134
Query: 122 K----------------KGHDGEE----------------------------VPIMLRSS 137
+ + HD E +PIML+S
Sbjct: 135 EGRERLIAERDDAEQGEEDHDEERRSRGTYLHWEPKPLNEDEPEEENVFIGRMPIMLKSK 194
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YC L ++++L ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK P+ YV
Sbjct: 195 YCILKDLNEQSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYV 254
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AE+ S E +R S + + + + A G G I +TLPYI+T+IPI+++FRALG +
Sbjct: 255 AEIRSAIEKGSRILSQLSIKLFGKGDASKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVS 314
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYA 312
DEDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + EK ++YA
Sbjct: 315 DEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYA 374
Query: 313 KEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL 372
++I+QKE LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KRLDLAGPL
Sbjct: 375 RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 434
Query: 373 LGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNA 431
L LFR LF ++T D+ YVQ+CV+ + + L +KA T++GGLKY+LATGNWG Q A
Sbjct: 435 LANLFRILFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKA 494
Query: 432 AGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQA 483
A ++AGVSQVLN TYAST ++ K+AKPRQLHN+ WG++CPAETPEGQA
Sbjct: 495 ASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQA 554
Query: 484 CGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
CGLVKNLALM YIT+G+ + PI++F+ + E E
Sbjct: 555 CGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 589
>gi|239609658|gb|EEQ86645.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327357696|gb|EGE86553.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1258
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 273/575 (47%), Positives = 370/575 (64%), Gaps = 67/575 (11%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR-----PE 65
D++E T E+ W VIS++FE KGLV QQLDSFDEF TMQE+V+E + + E
Sbjct: 15 DQDEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPSE 74
Query: 66 SQHNP----GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVI 121
+ +P + F + L++P MTE DG T+ + + ARLRNLTY++PLY+ +TKRV
Sbjct: 75 DEIDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 134
Query: 122 K----------------KGHDGEE----------------------------VPIMLRSS 137
+ + HD E +PIML+S
Sbjct: 135 EGRERLIAERDDAEQGEEDHDEERRSRGTYLHWEPKPLNEDEPEEENVFIGRMPIMLKSK 194
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YC L ++++L ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK P+ YV
Sbjct: 195 YCILKDLNEQSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYV 254
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AE+ S E +R S + + + + A G G I +TLPYI+T+IPI+++FRALG +
Sbjct: 255 AEIRSAIEKGSRILSQLSIKLFGKGDASKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVS 314
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYA 312
DEDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + EK ++YA
Sbjct: 315 DEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYA 374
Query: 313 KEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL 372
++I+QKE LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KRLDLAGPL
Sbjct: 375 RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 434
Query: 373 LGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNA 431
L LFR LF ++T D+ YVQ+CV+ + + L +KA T++GGLKY+LATGNWG Q A
Sbjct: 435 LANLFRILFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKA 494
Query: 432 AGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQA 483
A ++AGVSQVLN TYAST ++ K+AKPRQLHN+ WG++CPAETPEGQA
Sbjct: 495 ASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQA 554
Query: 484 CGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
CGLVKNLALM YIT+G+ + PI++F+ + E E
Sbjct: 555 CGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 589
>gi|327298359|ref|XP_003233873.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum CBS
118892]
gi|326464051|gb|EGD89504.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum CBS
118892]
Length = 1258
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 274/574 (47%), Positives = 371/574 (64%), Gaps = 68/574 (11%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR---PESQHN 69
EE T E+ W VISA+FE KGLV QQLDSFDEF TMQE+V+E + + P S
Sbjct: 16 EEGITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDE 75
Query: 70 PGQ------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK- 122
P + F + L++P MTE DG T+ + + ARLRNLTY++PLY+ ++K++++
Sbjct: 76 PDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIMEG 135
Query: 123 -------------------------KG------------HDGEE-------VPIMLRSSY 138
+G + EE +PIML+S Y
Sbjct: 136 RERLLSERDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKY 195
Query: 139 CTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVA 198
C L ++AL ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK P+ YVA
Sbjct: 196 CILKDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVA 255
Query: 199 EVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTAD 258
E+ S E +R S + + + S+ + G G I +TLPYI+T+IPI+++FRALG +D
Sbjct: 256 EIRSAVEKGSRILSQLSIKLFSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSD 315
Query: 259 EDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYAK 313
EDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + + +EK ++YA+
Sbjct: 316 EDILNHICYDRNDTSMLEMLKPCIEEGFVIQDREVALDFISKRGSSPMSMNQEKRVRYAR 375
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
+I+QKE LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KRLDLAGPLL
Sbjct: 376 DIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLL 435
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAA 432
LFR LF +LT D+ YVQ+CV+ G+ + L +KA T+TGGLKY+LATGNWG Q AA
Sbjct: 436 ANLFRVLFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAA 495
Query: 433 GTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQAC 484
++AGVSQVLN TYAST ++ K+AKPRQLHN+ WG++CPAETPEGQAC
Sbjct: 496 SSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQAC 555
Query: 485 GLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GLVKNLALM IT+G+ + PI++F+ + E E
Sbjct: 556 GLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLE 589
>gi|315041535|ref|XP_003170144.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
gi|311345178|gb|EFR04381.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
Length = 1258
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 273/574 (47%), Positives = 373/574 (64%), Gaps = 68/574 (11%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR-----PESQ 67
EE T E+ W VISA+FE KGLV QQLDSFDEF TMQE+V+E + + + +
Sbjct: 16 EEGITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDE 75
Query: 68 HNP----GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK- 122
H+P + F + L++P MTE DG T+ + + ARLRNLTY++PLY+ ++K++++
Sbjct: 76 HDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIMEG 135
Query: 123 -------------------------KG------------HDGEE-------VPIMLRSSY 138
+G + EE +PIML+S Y
Sbjct: 136 RERLLSERDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKY 195
Query: 139 CTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVA 198
C L ++AL ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK P+ YVA
Sbjct: 196 CILKDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVA 255
Query: 199 EVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTAD 258
E+ S E +R S + + + S+ + G G I +TLPYI+T+IPI+++FRALG +D
Sbjct: 256 EIRSAVEKGSRILSQLSIKLFSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSD 315
Query: 259 EDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYAK 313
EDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + + +EK ++YA+
Sbjct: 316 EDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPMSMNQEKRVRYAR 375
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
+I+QKE LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KRLDLAGPLL
Sbjct: 376 DIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLL 435
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAA 432
LFR LF +LT D+ YVQ+CV+ G+ + L +KA T+TGGLKY+LATGNWG Q AA
Sbjct: 436 ANLFRVLFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAA 495
Query: 433 GTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQAC 484
++AGVSQVLN TYAST ++ K+AKPRQLHN+ WG++CPAETPEGQAC
Sbjct: 496 SSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQAC 555
Query: 485 GLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GLVKNLALM IT+G+ + PI++F+ + E E
Sbjct: 556 GLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLE 589
>gi|134079870|emb|CAK41002.1| unnamed protein product [Aspergillus niger]
gi|350637591|gb|EHA25948.1| hypothetical protein ASPNIDRAFT_54460 [Aspergillus niger ATCC 1015]
Length = 1256
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 275/579 (47%), Positives = 375/579 (64%), Gaps = 65/579 (11%)
Query: 5 EERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR- 63
E+ +D +E T E+ W VIS++F+ KGLV QQLDSFDEF +TMQE+V+E + +
Sbjct: 9 EDEYYDDMDEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQ 68
Query: 64 ----PESQHNP----GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVD 115
E + +P + F + LS+P +TE DG T + + ARLRNLTY++PLY+
Sbjct: 69 TLPPSEDEVDPVVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLG 128
Query: 116 VTKRVI---------------------KKGHD---------------GEE------VPIM 133
VTK+++ KK H EE +PIM
Sbjct: 129 VTKKIMEGRERLVADRDDDDMAESTEDKKAHGTYLQWEQKELPADQAKEETVFIGKMPIM 188
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
L+S YC L S++AL ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK P+
Sbjct: 189 LKSKYCILKDLSEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSP 248
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
YVAE+ S E +R S + + + ++ + G G I +TLPY++T+IPI+++FRAL
Sbjct: 249 TPYVAEIRSAVEKGSRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRAL 308
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKM 308
G +DEDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + E+
Sbjct: 309 GVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSSMNHERR 368
Query: 309 IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDL 368
++YA+EI+QKE LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KRLDL
Sbjct: 369 VRYAREIMQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDL 428
Query: 369 AGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG- 427
AGPLL LFR LF ++T D++ YVQ+CV+ +++ L IKA T+TGGLKY+LATGNWG
Sbjct: 429 AGPLLANLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGE 488
Query: 428 QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETP 479
Q AA +AGVSQVL+ TYAST ++ K+AKPRQLHN+ WG++CPAETP
Sbjct: 489 QKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 548
Query: 480 EGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
EGQACGLVKNLALM YIT+G+ + PI++F+ + E E
Sbjct: 549 EGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 587
>gi|258576891|ref|XP_002542627.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237902893|gb|EEP77294.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 884
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 275/574 (47%), Positives = 371/574 (64%), Gaps = 69/574 (12%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDE----SADIEIRPESQH 68
EE T E+ W VIS++FE KGLV QQLDSFDEF TMQE+V+E + D I PE +
Sbjct: 17 EEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTIAPE-ED 75
Query: 69 NPGQ------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV-- 120
+P + F + L++P MTE DG T+ + + ARLRNLTY++PLY+ +TK+V
Sbjct: 76 DPDPVLVRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKKVAE 135
Query: 121 ------------------------------------IKKGHDGEE------VPIMLRSSY 138
+ + +GEE +PIML+S Y
Sbjct: 136 GRERSLAERDEDEEPEEKGDEERRARGTYLQWAPRALPEDEEGEENIFIGKMPIMLKSKY 195
Query: 139 CTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVA 198
C L + AL ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK P+ +VA
Sbjct: 196 CILKDLGEHALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPFVA 255
Query: 199 EVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTAD 258
E+ S E +R S + + + ++ + G G I +TLPYI+T+IPI+++FRALG +D
Sbjct: 256 EIRSAVEKGSRILSQLSIKLFAKGDSSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSD 315
Query: 259 EDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYAK 313
EDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + EK ++YA+
Sbjct: 316 EDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYAR 375
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
+I+QKE LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G KRLDLAGPLL
Sbjct: 376 DIIQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLL 435
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAA 432
LFR LF +LT D+ YVQ+CV+ + + L+ +KA T+TGGLKY+LATGNWG Q AA
Sbjct: 436 ANLFRVLFMRLTKDLYKYVQRCVETNRQLYLKIGVKASTLTGGLKYALATGNWGEQKKAA 495
Query: 433 GTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQAC 484
++AGVSQVLN TYAST ++ K+AKPRQLHN+ WG++CPAETPEGQAC
Sbjct: 496 SSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQAC 555
Query: 485 GLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GLVKNLALM YIT+G+ + PI++F+ + E E
Sbjct: 556 GLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 589
>gi|326484701|gb|EGE08711.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton equinum CBS
127.97]
Length = 1258
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 274/574 (47%), Positives = 371/574 (64%), Gaps = 68/574 (11%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR---PESQHN 69
EE T E+ W VISA+FE KGLV QQLDSFDEF TMQE+V+E + + P S
Sbjct: 16 EEGITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDE 75
Query: 70 PGQ------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK- 122
P + F + L++P MTE DG T+ + + ARLRNLTY++PLY+ ++K++++
Sbjct: 76 PDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIMEG 135
Query: 123 -------------------------KG------------HDGEE-------VPIMLRSSY 138
+G + EE +PIML+S Y
Sbjct: 136 RERLLSERDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKY 195
Query: 139 CTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVA 198
C L ++AL ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK P+ YVA
Sbjct: 196 CILKDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVA 255
Query: 199 EVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTAD 258
E+ S E +R S + + + S+ + G G I +TLPYI+T+IPI+++FRALG +D
Sbjct: 256 EIRSAVEKGSRILSQLSIKLFSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSD 315
Query: 259 EDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYAK 313
EDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + + +EK ++YA+
Sbjct: 316 EDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPMSMNQEKRVRYAR 375
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
+I+QKE LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KRLDLAGPLL
Sbjct: 376 DIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLL 435
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAA 432
LFR LF +LT D+ YVQ+CV+ G+ + L +KA T+TGGLKY+LATGNWG Q AA
Sbjct: 436 ANLFRVLFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAA 495
Query: 433 GTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQAC 484
++AGVSQVLN TYAST ++ K+AKPRQLHN+ WG++CPAETPEGQAC
Sbjct: 496 SSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQAC 555
Query: 485 GLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GLVKNLALM IT+G+ + PI++F+ + E E
Sbjct: 556 GLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLE 589
>gi|70982424|ref|XP_746740.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus
Af293]
gi|66844364|gb|EAL84702.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus
Af293]
gi|159123019|gb|EDP48139.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus
A1163]
Length = 1255
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 272/582 (46%), Positives = 374/582 (64%), Gaps = 70/582 (12%)
Query: 5 EERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRP 64
E+ ++ EE T E+ W VIS++F+ KGLV QQLDSFDEF +TMQE+V+E + +
Sbjct: 9 EDEFYDEMEEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL-- 66
Query: 65 ESQHNPGQQSD-----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+ P + D F + LS+P +TE DG T + + ARLRNLTY++PLY
Sbjct: 67 DQTLPPSEDEDDPVVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLY 126
Query: 114 VDVTKRVIK-------------------------------------KGHDGEE------V 130
+ +TKR+++ EE +
Sbjct: 127 LGITKRIMEGRERLIADRDEDDAAPDADEDRKARGTYLQWEQKELPPDQAKEETVFIGKM 186
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
PIML+S YC L S++AL ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK
Sbjct: 187 PIMLKSKYCILKDLSEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAP 246
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILF 250
P+ YVAE+ S E +R S + + + ++ + G G I +TLPY++T+IPI+++F
Sbjct: 247 PSPTPYVAEIRSAVEKGSRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVF 306
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTR 305
RALG +DEDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ +
Sbjct: 307 RALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSSMNH 366
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
E+ ++YA+EI+QKE+LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KR
Sbjct: 367 ERRVRYAREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKR 426
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGN 425
LDLAGPLL LFR LF ++T D++ YVQ+CV+ +++ L IKA T+TGGLKY+LATGN
Sbjct: 427 LDLAGPLLANLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGN 486
Query: 426 WG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPA 476
WG Q AA ++AGVSQVL+ TYAST ++ K+AKPRQLHN+ WG++CPA
Sbjct: 487 WGEQKKAASSKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPA 546
Query: 477 ETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
ETPEGQACGLVKNLALM YIT+G+ + PI++F+ + E E
Sbjct: 547 ETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 588
>gi|302668317|ref|XP_003025731.1| hypothetical protein TRV_00102 [Trichophyton verrucosum HKI 0517]
gi|291189857|gb|EFE45120.1| hypothetical protein TRV_00102 [Trichophyton verrucosum HKI 0517]
Length = 1205
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 274/574 (47%), Positives = 371/574 (64%), Gaps = 68/574 (11%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR---PESQHN 69
EE T E+ W VISA+FE KGLV QQLDSFDEF TMQE+V+E + + P S
Sbjct: 16 EEGITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDE 75
Query: 70 PGQ------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK- 122
P + F + L++P MTE DG T+ + + ARLRNLTY++PLY+ ++K++++
Sbjct: 76 PDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIMEG 135
Query: 123 -------------------------KG------------HDGEE-------VPIMLRSSY 138
+G + EE +PIML+S Y
Sbjct: 136 RERLLSERDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKY 195
Query: 139 CTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVA 198
C L ++AL ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK P+ YVA
Sbjct: 196 CILKDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVA 255
Query: 199 EVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTAD 258
E+ S E +R S + + + S+ + G G I +TLPYI+T+IPI+++FRALG +D
Sbjct: 256 EIRSAVEKGSRILSQLSIKLFSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSD 315
Query: 259 EDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYAK 313
EDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + + +EK ++YA+
Sbjct: 316 EDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPMSMNQEKRVRYAR 375
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
+I+QKE LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KRLDLAGPLL
Sbjct: 376 DIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLL 435
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAA 432
LFR LF +LT D+ YVQ+CV+ G+ + L +KA T+TGGLKY+LATGNWG Q AA
Sbjct: 436 ANLFRVLFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAA 495
Query: 433 GTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQAC 484
++AGVSQVLN TYAST ++ K+AKPRQLHN+ WG++CPAETPEGQAC
Sbjct: 496 SSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQAC 555
Query: 485 GLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GLVKNLALM IT+G+ + PI++F+ + E E
Sbjct: 556 GLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLE 589
>gi|302507686|ref|XP_003015804.1| hypothetical protein ARB_06116 [Arthroderma benhamiae CBS 112371]
gi|291179372|gb|EFE35159.1| hypothetical protein ARB_06116 [Arthroderma benhamiae CBS 112371]
Length = 1205
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 274/574 (47%), Positives = 371/574 (64%), Gaps = 68/574 (11%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR---PESQHN 69
EE T E+ W VISA+FE KGLV QQLDSFDEF TMQE+V+E + + P S
Sbjct: 16 EEGITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDE 75
Query: 70 PGQ------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK- 122
P + F + L++P MTE DG T+ + + ARLRNLTY++PLY+ ++K++++
Sbjct: 76 PDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIMEG 135
Query: 123 -------------------------KG------------HDGEE-------VPIMLRSSY 138
+G + EE +PIML+S Y
Sbjct: 136 RERLLSERDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKY 195
Query: 139 CTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVA 198
C L ++AL ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK P+ YVA
Sbjct: 196 CILKDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVA 255
Query: 199 EVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTAD 258
E+ S E +R S + + + S+ + G G I +TLPYI+T+IPI+++FRALG +D
Sbjct: 256 EIRSAVEKGSRILSQLSIKLFSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSD 315
Query: 259 EDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYAK 313
EDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + + +EK ++YA+
Sbjct: 316 EDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPMSMNQEKRVRYAR 375
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
+I+QKE LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KRLDLAGPLL
Sbjct: 376 DIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLL 435
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAA 432
LFR LF +LT D+ YVQ+CV+ G+ + L +KA T+TGGLKY+LATGNWG Q AA
Sbjct: 436 ANLFRVLFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAA 495
Query: 433 GTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQAC 484
++AGVSQVLN TYAST ++ K+AKPRQLHN+ WG++CPAETPEGQAC
Sbjct: 496 SSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQAC 555
Query: 485 GLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GLVKNLALM IT+G+ + PI++F+ + E E
Sbjct: 556 GLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLE 589
>gi|358374560|dbj|GAA91151.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
kawachii IFO 4308]
Length = 1256
Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust.
Identities = 274/579 (47%), Positives = 375/579 (64%), Gaps = 65/579 (11%)
Query: 5 EERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR- 63
E+ +D +E T E+ W VIS++F+ KGLV QQLDSFDEF +TMQE+V+E + +
Sbjct: 9 EDEYYDDMDEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQ 68
Query: 64 ----PESQHNP----GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVD 115
E + +P + F + LS+P +TE DG T + + ARLRNLTY++PLY+
Sbjct: 69 TLPPSEDEVDPVVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLG 128
Query: 116 VTKRVI---------------------KKGHD---------------GEE------VPIM 133
VTK+++ +K H EE +PIM
Sbjct: 129 VTKKIMEGRERLVADRDEDDMGESNEDRKAHGTYLQWEQKELPADQAKEETVFIGKMPIM 188
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
L+S YC L S++AL ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK P+
Sbjct: 189 LKSKYCILKDLSEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSP 248
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
YVAE+ S E +R S + + + ++ + G G I +TLPY++T+IPI+++FRAL
Sbjct: 249 TPYVAEIRSAVEKGSRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRAL 308
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKM 308
G +DEDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + E+
Sbjct: 309 GVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSSMNHERR 368
Query: 309 IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDL 368
++YA+EI+QKE LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KRLDL
Sbjct: 369 VRYAREIMQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDL 428
Query: 369 AGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG- 427
AGPLL LFR LF ++T D++ YVQ+CV+ +++ L IKA T+TGGLKY+LATGNWG
Sbjct: 429 AGPLLANLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGE 488
Query: 428 QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETP 479
Q AA +AGVSQVL+ TYAST ++ K+AKPRQLHN+ WG++CPAETP
Sbjct: 489 QKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 548
Query: 480 EGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
EGQACGLVKNLALM YIT+G+ + PI++F+ + E E
Sbjct: 549 EGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 587
>gi|115385276|ref|XP_001209185.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
terreus NIH2624]
gi|114196877|gb|EAU38577.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
terreus NIH2624]
Length = 1256
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 272/580 (46%), Positives = 374/580 (64%), Gaps = 67/580 (11%)
Query: 5 EERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRP 64
E+ ++ +E T E+ W VIS++F+ KGLV QQLDSFDEF +TMQE+V+E + +
Sbjct: 9 EDEFYDEMDEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQ 68
Query: 65 ESQHNPGQ---------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVD 115
N + + F + LS+P +TE DG T + + ARLRNLTY++PLY+
Sbjct: 69 TLPPNEDEVDPIVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLG 128
Query: 116 VTKRVIKKGHD-----------GEEV--------------------------------PI 132
+TKR+++ G + GE V PI
Sbjct: 129 ITKRIME-GRERLVADRNEEEMGEPVEDRKSQGTYLQWEQKELPPDQAKEETVFIGKMPI 187
Query: 133 MLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN 192
ML+S YC L S++AL ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK P+
Sbjct: 188 MLKSKYCILKDLSEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPS 247
Query: 193 KYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRA 252
YVAE+ S E +R S + + + ++ + G G I +TLPY++T+IPI+++FRA
Sbjct: 248 PTPYVAEIRSAVEKGSRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRA 307
Query: 253 LGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREK 307
LG +DEDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + E+
Sbjct: 308 LGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSSMNHER 367
Query: 308 MIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLD 367
++YA+EI+QKE+LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KRLD
Sbjct: 368 RVRYAREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLD 427
Query: 368 LAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG 427
LAGPLL LFR LF ++T D++ YVQ+CV+ +++ L IKA T+TGGLKY+LATGNWG
Sbjct: 428 LAGPLLANLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWG 487
Query: 428 -QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAET 478
Q AA +AGVSQVL+ TYAST ++ K+AKPRQLHN+ WG++CPAET
Sbjct: 488 EQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 547
Query: 479 PEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PEGQACGLVKNLALM YIT+G+ + PI++F+ + E E
Sbjct: 548 PEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 587
>gi|119489058|ref|XP_001262829.1| DNA-dependent RNA polymerase II RPB140 [Neosartorya fischeri NRRL
181]
gi|119410987|gb|EAW20932.1| DNA-dependent RNA polymerase II RPB140 [Neosartorya fischeri NRRL
181]
Length = 1255
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 269/570 (47%), Positives = 368/570 (64%), Gaps = 70/570 (12%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD- 75
T E+ W VIS++F+ KGLV QQLDSFDEF +TMQE+V+E + + + P D
Sbjct: 21 TSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL--DQTLPPSDDEDD 78
Query: 76 ----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKK-- 123
F + LS+P +TE DG T + + ARLRNLTY++PLY+ +TKR+++
Sbjct: 79 PVVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIMEGRE 138
Query: 124 -----------GHDGEE------------------------------VPIMLRSSYCTLY 142
D +E +PIML+S YC L
Sbjct: 139 RLIADRDEDDVAPDADEDRKARGTYLQWEQKELPADQAKEETVFIGKMPIMLKSKYCILK 198
Query: 143 QNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCS 202
S++AL ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK P+ YVAE+ S
Sbjct: 199 DLSEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRS 258
Query: 203 MAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDIL 262
E +R S + + + ++ + G G I +TLPY++T+IPI+++FRALG +DEDIL
Sbjct: 259 AVEKGSRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDIL 318
Query: 263 EHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYAKEILQ 317
HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + E+ ++YA+EI+Q
Sbjct: 319 NHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSSMNHERRVRYAREIMQ 378
Query: 318 KEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF 377
KE+LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KRLDLAGPLL LF
Sbjct: 379 KELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLF 438
Query: 378 RTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRA 436
R LF ++T D++ YVQ+CV+ +++ L IKA T+TGGLKY+LATGNWG Q AA ++A
Sbjct: 439 RVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASSKA 498
Query: 437 GVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 488
GVSQVL+ TYAST ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVK
Sbjct: 499 GVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVK 558
Query: 489 NLALMVYITIGSAAYPILEFLEEWGTENFE 518
NLALM YIT+G+ + PI++F+ + E E
Sbjct: 559 NLALMCYITVGTPSEPIIDFMIQRNMEVLE 588
>gi|225680527|gb|EEH18811.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides
brasiliensis Pb03]
gi|226292836|gb|EEH48256.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides
brasiliensis Pb18]
Length = 1258
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 272/575 (47%), Positives = 369/575 (64%), Gaps = 67/575 (11%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR-----PE 65
++EE T E+ W VIS++FE KGLV QQLDSFDEF TMQE+V+E + + E
Sbjct: 15 EQEEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPSE 74
Query: 66 SQHNP----GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV- 120
+ +P + F + L++P MTE DG T+ + + ARLRNLTY++PLY+ +TKRV
Sbjct: 75 DEVDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 134
Query: 121 ------IKKGHDGE-------------------------------------EVPIMLRSS 137
I + D + +PIML+S
Sbjct: 135 EGRERLISERDDADQDEQDNDEDRRNRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSK 194
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YC L +++AL ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK P+ YV
Sbjct: 195 YCILKDLNEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYV 254
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AE+ S E +R S + + + ++ G G I +TLPYI+T+IPI+++FRALG +
Sbjct: 255 AEIRSAVEKGSRILSQLSIKLFAKGDTSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVS 314
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYA 312
DEDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + EK ++YA
Sbjct: 315 DEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYA 374
Query: 313 KEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL 372
++I+QKE LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KRLDLAGPL
Sbjct: 375 RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 434
Query: 373 LGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNA 431
L LFR LF ++T D+ YVQ+CV+ + + L +KA T++GGLKY+LATGNWG Q A
Sbjct: 435 LANLFRILFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKA 494
Query: 432 AGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQA 483
A ++AGVSQVLN TYAST ++ K+AKPRQLHN+ WG++CPAETPEGQA
Sbjct: 495 ASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQA 554
Query: 484 CGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
CGLVKNLALM YIT+G+ + PI++F+ + E E
Sbjct: 555 CGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 589
>gi|295661506|ref|XP_002791308.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226280870|gb|EEH36436.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1258
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 272/575 (47%), Positives = 369/575 (64%), Gaps = 67/575 (11%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR-----PE 65
++EE T E+ W VIS++FE KGLV QQLDSFDEF TMQE+V+E + + E
Sbjct: 15 EQEEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPSE 74
Query: 66 SQHNP----GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV- 120
+ +P + F + L++P MTE DG T+ + + ARLRNLTY++PLY+ +TKRV
Sbjct: 75 DEVDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 134
Query: 121 ------IKKGHDGE-------------------------------------EVPIMLRSS 137
I + D + +PIML+S
Sbjct: 135 EGRERLISERDDADQDEQDNDEDRRNRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSK 194
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YC L +++AL ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK P+ YV
Sbjct: 195 YCILKDLNEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYV 254
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AE+ S E +R S + + + ++ G G I +TLPYI+T+IPI+++FRALG +
Sbjct: 255 AEIRSAVEKGSRILSQLSIKLFAKGDTSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVS 314
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYA 312
DEDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + EK ++YA
Sbjct: 315 DEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYA 374
Query: 313 KEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL 372
++I+QKE LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KRLDLAGPL
Sbjct: 375 RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 434
Query: 373 LGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNA 431
L LFR LF ++T D+ YVQ+CV+ + + L +KA T++GGLKY+LATGNWG Q A
Sbjct: 435 LANLFRILFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKA 494
Query: 432 AGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQA 483
A ++AGVSQVLN TYAST ++ K+AKPRQLHN+ WG++CPAETPEGQA
Sbjct: 495 ASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQA 554
Query: 484 CGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
CGLVKNLALM YIT+G+ + PI++F+ + E E
Sbjct: 555 CGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 589
>gi|330922612|ref|XP_003299905.1| hypothetical protein PTT_11005 [Pyrenophora teres f. teres 0-1]
gi|311326219|gb|EFQ92000.1| hypothetical protein PTT_11005 [Pyrenophora teres f. teres 0-1]
Length = 1262
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 273/574 (47%), Positives = 368/574 (64%), Gaps = 67/574 (11%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
EDEE+ E+ WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+ + + +N
Sbjct: 16 EDEEDRVLPEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNQPYN 75
Query: 70 PGQQSD----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR 119
P ++ + F +YL++P TE DG T L+ ARLRNLTYS + D+ R
Sbjct: 76 PDEEDNPIIKRRYEMKFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADIENR 135
Query: 120 VI--KKGHDGE--------------------------------------EVPIMLRSSYC 139
V+ ++G D E ++P+MLRS C
Sbjct: 136 VMVAREGRDPEADDDEEMEGGYTGGQNQIRWERENMSSDDGAAARVFIGKLPVMLRSELC 195
Query: 140 TLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAE 199
L S L L ECPYD+GGYF+INGSEKVLIAQE+ + N V VF+K+Q ++AE
Sbjct: 196 HLRAQSDADLFALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQ-GPIPWIAE 254
Query: 200 VCSMAESQNRPPSTIFVPMLSRTSAKGGS--SGQYIHATLPYIRTEIPIIILFRALGFTA 257
+ S E R S+ + + A G G + +ATLPYI+ ++P+ I+FRALG +
Sbjct: 255 IRSAVEKGTRLISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADVPMAIVFRALGIVS 314
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
DE+IL HI +D DTQ +ELL+PS+EE +Q+++ +I KRGA G TR++ +K+A+
Sbjct: 315 DEEILSHIVFDRNDTQTLELLKPSIEEGSVVQDRETALDFIAKRGANSG-TRDRRLKFAR 373
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
+I+Q+E LPH+ + +T+KAY+FG++IHRLL C LGRR EDDRDH+G KRLDLAGPL+
Sbjct: 374 DIMQREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLI 433
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAA 432
LFR LF KLT DV Y+Q+CV+N +D N+Q A+KA TIT GLKYSLATGNWG Q AA
Sbjct: 434 ANLFRILFLKLTKDVYKYLQRCVENNQDFNVQMAVKASTITNGLKYSLATGNWGDQKKAA 493
Query: 433 GTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQAC 484
+AGVSQVLN TYAST ++ KLAKPRQLHNS WG++CPAETPEGQAC
Sbjct: 494 SAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQAC 553
Query: 485 GLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GLVKNL+LM Y+++GS A PI++F+ + + E
Sbjct: 554 GLVKNLSLMCYVSVGSDATPIVDFMTQRNMQLLE 587
>gi|296818239|ref|XP_002849456.1| DNA-dependent RNA polymerase II RPB140 [Arthroderma otae CBS
113480]
gi|238839909|gb|EEQ29571.1| DNA-dependent RNA polymerase II RPB140 [Arthroderma otae CBS
113480]
Length = 1258
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 271/574 (47%), Positives = 369/574 (64%), Gaps = 68/574 (11%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ 72
EE T E+ W VISA+FE KGLV QQLDSFDEF TMQE+V+E + + +
Sbjct: 16 EEGITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPGDDE 75
Query: 73 QS---------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK- 122
Q F + L++P MTE DG T+ + + ARLRNLTY++PLY+ ++K++++
Sbjct: 76 QDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIMEG 135
Query: 123 -------------------------KG------------HDGEE-------VPIMLRSSY 138
+G + EE +PIML+S Y
Sbjct: 136 RERLLSERDDEEEEVEEKGDEERRSRGTYLHWERKPTLEDEAEEENIFIGKMPIMLKSKY 195
Query: 139 CTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVA 198
C L ++AL ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK P+ YVA
Sbjct: 196 CILKDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVA 255
Query: 199 EVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTAD 258
E+ S E +R S + + + ++ + G G I +TLPYI+T+IPI+++FRALG +D
Sbjct: 256 EIRSAVEKGSRILSQLSIKLFAKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSD 315
Query: 259 EDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYAK 313
EDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + + +EK ++YA+
Sbjct: 316 EDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPMSMNQEKRVRYAR 375
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
+I+QKE LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KRLDLAGPLL
Sbjct: 376 DIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLL 435
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAA 432
LFR LF +LT D+ YVQ+CV+ G+ + L +KA T+TGGLKY+LATGNWG Q AA
Sbjct: 436 ANLFRVLFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAA 495
Query: 433 GTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQAC 484
++AGVSQVLN TYAST ++ K+AKPRQLHN+ WG++CPAETPEGQAC
Sbjct: 496 SSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQAC 555
Query: 485 GLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GLVKNLALM IT+G+ + PI++F+ + E E
Sbjct: 556 GLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLE 589
>gi|254581920|ref|XP_002496945.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
gi|238939837|emb|CAR28012.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
Length = 1224
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 284/553 (51%), Positives = 375/553 (67%), Gaps = 48/553 (8%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
EDE T E++WAVISA+F EKGLV QQLDSF++F T+Q+I+ E + + + +QH
Sbjct: 19 EDENFPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHT 78
Query: 70 PGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV-- 120
+ F +IY++KPM+ ESDG T L+ + ARLRNLTYS+ L+VDV KR
Sbjct: 79 TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTHE 138
Query: 121 --------IKKGHDGEE--------------VPIMLRSSYCTLYQNSQKALTELGECPYD 158
+K EE +PIMLRS C L ++ L +L ECP+D
Sbjct: 139 AVDIPGRELKYEMIAEESENDSDSGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFD 198
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GGYFIINGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R ST+ V +
Sbjct: 199 MGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKL 258
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
+R G+S + I ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+E+L
Sbjct: 259 FARE----GNSSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEML 314
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
+P +E+ F IQ+++ +IG+RG +G+ +EK I+YA++ILQKE LPH+ + E++K
Sbjct: 315 KPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGFESRK 374
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
A++ G++I+RLLLCAL RR +DDRDH+G KRLDLAGPLL LF+TLFRKLT D+ Y+Q+
Sbjct: 375 AFFLGYMINRLLLCALDRRDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDIFRYMQR 434
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTY 453
V+ KD N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 435 TVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 494
Query: 454 Y--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ PI
Sbjct: 495 LRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPI 554
Query: 506 LEFLEEWGTENFE 518
+ FL EWG E E
Sbjct: 555 ITFLSEWGMEPLE 567
>gi|303315773|ref|XP_003067891.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240107567|gb|EER25746.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 1258
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 276/574 (48%), Positives = 368/574 (64%), Gaps = 68/574 (11%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDE----SADIEIRP-ESQ 67
EE T E+ W VIS++FE KGLV QQLDSFDEF TMQE+V+E + D I P E
Sbjct: 17 EEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTIAPDEDD 76
Query: 68 HNPGQ----QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK- 122
+P + F + L++P MTE DG T+ + + ARLRNLTY++PLY+ +TK++ +
Sbjct: 77 PDPVMVRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKKIAEG 136
Query: 123 -----------------KGH----------------------DGEEV-----PIMLRSSY 138
KG D E + PIML+S Y
Sbjct: 137 RERSLAERDEDDDEPDAKGDEERRARGTYLQWEPKALPEDEADEENIFIGKMPIMLKSKY 196
Query: 139 CTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVA 198
C L + AL ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK P+ YVA
Sbjct: 197 CILKDLGEHALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVA 256
Query: 199 EVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTAD 258
E+ S E +R S + + + ++ + G G I +TLPYI+T+IPI+++FRALG +D
Sbjct: 257 EIRSAVEKGSRILSQLSIKLFAKGDSSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSD 316
Query: 259 EDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYAK 313
EDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + EK ++YA+
Sbjct: 317 EDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYAR 376
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
+I+QKE LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G KRLDLAGPLL
Sbjct: 377 DIIQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLL 436
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAA 432
LFR LF +LT D+ YVQ+CV+ + + L +KA T+TGGLKY+LATGNWG Q AA
Sbjct: 437 ANLFRVLFMRLTKDLYKYVQRCVETNRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAA 496
Query: 433 GTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQAC 484
++AGVSQVLN TYAST ++ K+AKPRQLHN+ WG++CPAETPEGQAC
Sbjct: 497 SSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQAC 556
Query: 485 GLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GLVKNLALM YIT+G+ + PI++F+ + E E
Sbjct: 557 GLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 590
>gi|392867393|gb|EAS29377.2| DNA-directed RNA polymerase II subunit RPB2 [Coccidioides immitis
RS]
Length = 1258
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 276/574 (48%), Positives = 368/574 (64%), Gaps = 68/574 (11%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDE----SADIEIRP-ESQ 67
EE T E+ W VIS++FE KGLV QQLDSFDEF TMQE+V+E + D I P E
Sbjct: 17 EEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTIAPDEDD 76
Query: 68 HNPGQ----QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK- 122
+P + F + L++P MTE DG T+ + + ARLRNLTY++PLY+ +TK++ +
Sbjct: 77 PDPVMVRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKKIAEG 136
Query: 123 -----------------KGH----------------------DGEEV-----PIMLRSSY 138
KG D E + PIML+S Y
Sbjct: 137 RERSLAERDEDDDEPDAKGDEERRARGTYLQWEPKALPEDEADEENIFIGKMPIMLKSKY 196
Query: 139 CTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVA 198
C L + AL ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK P+ YVA
Sbjct: 197 CILKDLGEHALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVA 256
Query: 199 EVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTAD 258
E+ S E +R S + + + ++ + G G I +TLPYI+T+IPI+++FRALG +D
Sbjct: 257 EIRSAVEKGSRILSQLSIKLFAKGDSSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSD 316
Query: 259 EDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYAK 313
EDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + EK ++YA+
Sbjct: 317 EDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYAR 376
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
+I+QKE LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G KRLDLAGPLL
Sbjct: 377 DIIQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLL 436
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAA 432
LFR LF +LT D+ YVQ+CV+ + + L +KA T+TGGLKY+LATGNWG Q AA
Sbjct: 437 ANLFRVLFMRLTKDLYKYVQRCVETNRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAA 496
Query: 433 GTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQAC 484
++AGVSQVLN TYAST ++ K+AKPRQLHN+ WG++CPAETPEGQAC
Sbjct: 497 SSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQAC 556
Query: 485 GLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GLVKNLALM YIT+G+ + PI++F+ + E E
Sbjct: 557 GLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 590
>gi|45545323|gb|AAS67509.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Cryptococcus neoformans]
Length = 1114
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 267/553 (48%), Positives = 366/553 (66%), Gaps = 51/553 (9%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN- 69
D++E +QE+ W V +++FEEKGLVRQQL+SF+EF + TMQEIVD+ + + + +Q+
Sbjct: 35 DDDEPISQEDYWTVTNSFFEEKGLVRQQLESFNEFIETTMQEIVDDHSRLTLDQFTQYTG 94
Query: 70 -PGQQS-----DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKK 123
G ++ F +IYL++ TE DG T LF + ARLRNLTYSAPLYVD+ KR +
Sbjct: 95 VAGDETRRYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLTA 154
Query: 124 ---------------GHDGE------------EVPIMLRSSYCTLYQNSQKALTELGECP 156
G DGE +VP+M+RS++C L+ E+GECP
Sbjct: 155 SGVDDPVEADWQPAVGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGECP 214
Query: 157 YDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV 216
YD+GGYFII+GSEKVLIAQE+M+TNHV+VF K P ++ Y AE+ S E R + V
Sbjct: 215 YDQGGYFIISGSEKVLIAQERMATNHVFVFLKAAPARFTYFAEINSQKEKGGRVANHTEV 274
Query: 217 PMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMME 276
M +R S G++G I +LPY + +IP++++FRALG D D+L HIC+ +D ++E
Sbjct: 275 RMYARAS---GTTGGVIRVSLPYTKVDIPLVVVFRALGIVPDRDVLSHICFGAEDEALLE 331
Query: 277 LLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET 332
+L+PS+EE+F +Q++ +IG+RG R + + A +IL KE LPHV T + E+
Sbjct: 332 MLQPSIEESFAVQDRDTALDFIGRRGQHEKAPRAQRQRAAFDILHKEFLPHVSTAEGFES 391
Query: 333 KKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYV 392
KKAY+ G+++HRL + ALGRR DDRDH+GNKRLDLAGPL+ +F +F KL D+ Y+
Sbjct: 392 KKAYFLGYMVHRLCMAALGRRELDDRDHFGNKRLDLAGPLMAEMFNVVFGKLREDMYRYL 451
Query: 393 QKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFT 452
+KCV+ K+ L AI+ TIT GLKY+LATGNWG+ + TRAGVSQVLN T+ ST +
Sbjct: 452 KKCVEQNKEFALNMAIRPNTITDGLKYALATGNWGKRD--NTRAGVSQVLNSYTFTSTLS 509
Query: 453 YY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYP 504
+ K AKPRQLH++ WGM+CPAETPEG ACGLVKNLALM YI++GS + P
Sbjct: 510 HLRRTNTPIGRDSKAAKPRQLHDTHWGMVCPAETPEGSACGLVKNLALMSYISVGSYSAP 569
Query: 505 ILEFLEEWGTENF 517
++EFLEEWG E+
Sbjct: 570 VMEFLEEWGLEDL 582
>gi|189197211|ref|XP_001934943.1| DNA-directed RNA polymerase II subunit RPB2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187980891|gb|EDU47517.1| DNA-directed RNA polymerase II subunit RPB2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1208
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 272/574 (47%), Positives = 368/574 (64%), Gaps = 67/574 (11%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
EDEE+ E+ WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+ + + +N
Sbjct: 16 EDEEDRVLPEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNQPYN 75
Query: 70 PGQQSD----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR 119
P ++ + F +YL++P TE DG T L+ ARLRNLTYS + D+ R
Sbjct: 76 PDEEDNPIIKRRYEMKFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADIENR 135
Query: 120 VI--KKGHDGE--------------------------------------EVPIMLRSSYC 139
V+ ++G D + ++P+MLRS C
Sbjct: 136 VMVAREGRDPDADDDEEMEGGYTGGQNQIRWERENMSSDDGAAARVFIGKLPVMLRSELC 195
Query: 140 TLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAE 199
L S L L ECPYD+GGYF+INGSEKVLIAQE+ + N V VF+K+Q ++AE
Sbjct: 196 HLRAQSDADLFALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQ-GPIPWIAE 254
Query: 200 VCSMAESQNRPPSTIFVPMLSRTSAKGGS--SGQYIHATLPYIRTEIPIIILFRALGFTA 257
+ S E R S+ + + A G G + +ATLPYI+ ++P+ I+FRALG +
Sbjct: 255 IRSAVEKGTRLISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADVPMAIVFRALGIVS 314
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
DE+IL HI +D DTQ +ELL+PS+EE +Q+++ +I KRGA G TR++ +K+A+
Sbjct: 315 DEEILSHIVFDRNDTQTLELLKPSIEEGSVVQDRETALDFIAKRGANSG-TRDRRLKFAR 373
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
+I+Q+E LPH+ + +T+KAY+FG++IHRLL C LGRR EDDRDH+G KRLDLAGPL+
Sbjct: 374 DIMQREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLI 433
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAA 432
LFR LF KLT DV Y+Q+CV+N +D N+Q A+KA TIT GLKYSLATGNWG Q AA
Sbjct: 434 ANLFRILFLKLTKDVYKYLQRCVENNQDFNVQMAVKASTITNGLKYSLATGNWGDQKKAA 493
Query: 433 GTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQAC 484
+AGVSQVLN TYAST ++ KLAKPRQLHNS WG++CPAETPEGQAC
Sbjct: 494 SAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQAC 553
Query: 485 GLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GLVKNL+LM Y+++GS A PI++F+ + + E
Sbjct: 554 GLVKNLSLMCYVSVGSDATPIVDFMTQRNMQLLE 587
>gi|320031539|gb|EFW13500.1| DNA-dependent RNA polymerase II RPB140 [Coccidioides posadasii str.
Silveira]
Length = 1205
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 276/574 (48%), Positives = 368/574 (64%), Gaps = 68/574 (11%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDE----SADIEIRP-ESQ 67
EE T E+ W VIS++FE KGLV QQLDSFDEF TMQE+V+E + D I P E
Sbjct: 17 EEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTIAPDEDD 76
Query: 68 HNPGQ----QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK- 122
+P + F + L++P MTE DG T+ + + ARLRNLTY++PLY+ +TK++ +
Sbjct: 77 PDPVMVRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKKIAEG 136
Query: 123 -----------------KGH----------------------DGEEV-----PIMLRSSY 138
KG D E + PIML+S Y
Sbjct: 137 RERSLAERDEDDDEPDAKGDEERRARGTYLQWEPKALPEDEADEENIFIGKMPIMLKSKY 196
Query: 139 CTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVA 198
C L + AL ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK P+ YVA
Sbjct: 197 CILKDLGEHALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVA 256
Query: 199 EVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTAD 258
E+ S E +R S + + + ++ + G G I +TLPYI+T+IPI+++FRALG +D
Sbjct: 257 EIRSAVEKGSRILSQLSIKLFAKGDSSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSD 316
Query: 259 EDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYAK 313
EDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + EK ++YA+
Sbjct: 317 EDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYAR 376
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
+I+QKE LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G KRLDLAGPLL
Sbjct: 377 DIIQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLL 436
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAA 432
LFR LF +LT D+ YVQ+CV+ + + L +KA T+TGGLKY+LATGNWG Q AA
Sbjct: 437 ANLFRVLFMRLTKDLYKYVQRCVETNRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAA 496
Query: 433 GTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQAC 484
++AGVSQVLN TYAST ++ K+AKPRQLHN+ WG++CPAETPEGQAC
Sbjct: 497 SSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQAC 556
Query: 485 GLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GLVKNLALM YIT+G+ + PI++F+ + E E
Sbjct: 557 GLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 590
>gi|95115795|gb|ABF56192.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. tritici]
gi|95115797|gb|ABF56193.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. tritici]
Length = 1262
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 274/571 (47%), Positives = 366/571 (64%), Gaps = 69/571 (12%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E T E+ WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+ + + + ++P + S
Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78
Query: 75 D----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR----- 119
D F +YL++P TE DG T LF ARLRNLTYS + D++ R
Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138
Query: 120 ---VIKKGHDGE--------------------------------EVPIMLRSSYCTLYQN 144
V+ +G D + ++P+MLRS C L
Sbjct: 139 ETQVVVEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198
Query: 145 SQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMA 204
S +AL ECPYD+GGYF+INGSEKVLIAQE+ + N V VF+K+Q N + AE+ S
Sbjct: 199 SDEALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGN-VPWTAEIRSAV 257
Query: 205 ESQNRPPSTIFVPMLSRTSAKGG----SSGQYIHATLPYIRTEIPIIILFRALGFTADED 260
E R S+ + + G + G + +A LPYI+TE+P+ I+FRALG +DE+
Sbjct: 258 EKGTRLISSFNIKWADNSLGGPGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEE 317
Query: 261 ILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEIL 316
IL HI YD DTQM+ELL+PS+EE IQ+++ +I KRGA G TR++ +K+A++I+
Sbjct: 318 ILSHIVYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIM 376
Query: 317 QKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 376
Q+E LPH+ + +T+KAY+FG++IHRLL C LGRR EDDRDH+G KRLDLAGPL+ L
Sbjct: 377 QREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANL 436
Query: 377 FRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTR 435
FR LF KLT DV Y+Q+CV++ D N+Q A+KA IT GLKYSLATGNWG Q AA +
Sbjct: 437 FRILFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAK 496
Query: 436 AGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLV 487
AGVSQVLN TYAST ++ KLAKPRQLHNS WG++CPAETPEGQACGLV
Sbjct: 497 AGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLV 556
Query: 488 KNLALMVYITIGSAAYPILEFLEEWGTENFE 518
KNL+LM Y+++GS A PI++F+ + + E
Sbjct: 557 KNLSLMCYVSVGSDATPIIDFMSQRNMQLLE 587
>gi|345561256|gb|EGX44352.1| hypothetical protein AOL_s00193g80 [Arthrobotrys oligospora ATCC
24927]
Length = 1258
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 272/576 (47%), Positives = 368/576 (63%), Gaps = 75/576 (13%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ---- 72
T E+ W VIS++F+ KGLV QQ+DSFDEF TMQE++DE + + + N
Sbjct: 17 TAEDCWTVISSFFDAKGLVSQQIDSFDEFVSTTMQELIDEDNQLVLDHNTPSNDEGIALR 76
Query: 73 --QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVI--------- 121
+ F + LS+P TE DG T + + ARLRNLTY++PLY+ ++++V+
Sbjct: 77 RFEIKFGNVLLSRPTFTEGDGSTQVMQPQEARLRNLTYASPLYLQMSQKVMVAREKSMAE 136
Query: 122 ----------------KK----------GHDGEEV--------------------PIMLR 135
KK G EEV PIML+
Sbjct: 137 KEEDEDEDMDDAEEGEKKEKQDFHWQVIGDTTEEVGDDDDDIDTSNHTRVFIGKIPIMLK 196
Query: 136 SSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA 195
S YC L + ++ L L ECPYD+GGYF+INGSEKVLIAQE+ + N V FKK P+ +
Sbjct: 197 SQYCVLKEFNEDGLYGLNECPYDQGGYFVINGSEKVLIAQERSAANIVQCFKKAAPSPIS 256
Query: 196 YVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGF 255
Y+AE+ S E +R S++ + ++++ + G G+ I +TLPYI+T++PI ++FRALG
Sbjct: 257 YIAEIRSALEKGSRLISSLTIKLMAKGEGRTG-FGRTIRSTLPYIKTDVPIAVVFRALGV 315
Query: 256 TADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKY 311
+DEDIL +CYD DT M+E+L+P +EEAF IQ+++ +IGKRG+ G+ R+K IKY
Sbjct: 316 VSDEDILNRVCYDRNDTAMLEMLKPCIEEAFVIQDREVALDFIGKRGSAQGINRDKRIKY 375
Query: 312 AKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 371
AKEI+QKE+LPH+ + ET+KA++ G+++H++L CAL RR DDRDH+G KRLDLAGP
Sbjct: 376 AKEIMQKELLPHISQAEGHETRKAFFLGYMVHKMLQCALERRETDDRDHFGRKRLDLAGP 435
Query: 372 LLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGN 430
LL LFR LF+KL DV Y+QKCV++G+D N+ AIK+ TIT GLKYSLATGNWG Q
Sbjct: 436 LLANLFRMLFKKLVKDVFKYLQKCVESGRDFNVTLAIKSNTITNGLKYSLATGNWGDQKK 495
Query: 431 AAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQ 482
A +AGVSQVLN T+AST ++ K+AKPRQLHN+ WG++CPAETPEGQ
Sbjct: 496 PASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 555
Query: 483 ACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
ACGLVKNL+LM YIT+GS PI F+E+ E E
Sbjct: 556 ACGLVKNLSLMSYITVGSPTEPIQAFMEQRNLEPLE 591
>gi|154279576|ref|XP_001540601.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Ajellomyces
capsulatus NAm1]
gi|150412544|gb|EDN07931.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Ajellomyces
capsulatus NAm1]
Length = 1743
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 270/575 (46%), Positives = 367/575 (63%), Gaps = 67/575 (11%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR-----PE 65
D++E T E+ W VIS++FE KGLV QQLDSFDEF TMQE+V+E + + E
Sbjct: 500 DQDEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPAE 559
Query: 66 SQHNP----GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV- 120
+ +P + F + L++P MTE DG T+ + + ARLRNLTY++PLY+ +TKRV
Sbjct: 560 DKIDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 619
Query: 121 ------IKKGHDGEE-------------------------------------VPIMLRSS 137
I + D E+ +PIML+S
Sbjct: 620 EGRERLIAERDDAEQGEEDNDEERRSRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSK 679
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YC L ++++L ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK P+ YV
Sbjct: 680 YCILKDLNEQSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYV 739
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AE+ S E +R S + + + + G I +TLPYI+T+IPI+++FRALG +
Sbjct: 740 AEIRSAVEKGSRILSQLSIKLFGKGDTSKSGFGPTIRSTLPYIKTDIPIVVVFRALGVVS 799
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYA 312
DEDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + EK ++YA
Sbjct: 800 DEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYA 859
Query: 313 KEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL 372
++I+QKE LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KRLDLAGPL
Sbjct: 860 RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 919
Query: 373 LGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNA 431
L LFR LF ++T D+ YVQ+CV+ + + L +KA T++GGLKY+LATGNWG Q A
Sbjct: 920 LANLFRILFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKA 979
Query: 432 AGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQA 483
A ++AGVSQVLN TYAST ++ K+AKPRQLHN+ WG++CPAETPEGQA
Sbjct: 980 ASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQA 1039
Query: 484 CGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
CGLVKNLALM IT+G+ + PI++F+ + E E
Sbjct: 1040 CGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLE 1074
>gi|95115793|gb|ABF56191.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. tritici]
Length = 1262
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 272/571 (47%), Positives = 366/571 (64%), Gaps = 69/571 (12%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E T E+ WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+ + + + ++P + S
Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78
Query: 75 D----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR----- 119
D F +YL++P TE DG T LF ARLRNLTYS + D++ R
Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138
Query: 120 ---VIKKGHDGE--------------------------------EVPIMLRSSYCTLYQN 144
V+ +G D + ++P+MLRS C L
Sbjct: 139 ETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDDEAARVFIGKLPVMLRSELCHLRNQ 198
Query: 145 SQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMA 204
+ +AL ECPYD+GGYF+INGSEKVLIAQE+ + N V VF+K+Q + AE+ S
Sbjct: 199 TDEALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQ-GPIPWTAEIRSAV 257
Query: 205 ESQNRPPSTIFVPMLSRTSAKGG----SSGQYIHATLPYIRTEIPIIILFRALGFTADED 260
E R S+ + + A G + G + +A LPYI+TE+P+ I+FRALG +DE+
Sbjct: 258 EKGTRLISSFNIKWADNSLANPGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEE 317
Query: 261 ILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEIL 316
IL HI YD DTQM+ELL+PS+EE +Q+++ +I KRGA G TR++ +K+A++I+
Sbjct: 318 ILSHIVYDRTDTQMLELLKPSIEEGAVVQDRETALDFIAKRGANQG-TRDRRLKFARDIM 376
Query: 317 QKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 376
Q+E LPH+ + +T+KAY+FG++IHRLL C LGRR EDDRDH+G KRLDLAGPL+ L
Sbjct: 377 QREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANL 436
Query: 377 FRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTR 435
FR LF KLT DV Y+Q+CV++ D N+Q A+KA IT GLKYSLATGNWG Q AA +
Sbjct: 437 FRILFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAK 496
Query: 436 AGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLV 487
AGVSQVLN TYAST ++ KLAKPRQLHNS WG++CPAETPEGQACGLV
Sbjct: 497 AGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLV 556
Query: 488 KNLALMVYITIGSAAYPILEFLEEWGTENFE 518
KNL+LM Y+++GS A PI++F+ + + E
Sbjct: 557 KNLSLMCYVSVGSDATPIVDFMSQRNMQLLE 587
>gi|95115789|gb|ABF56189.1| RNA polymerase II second largest subunit [Phaeosphaeria sp.
S-93-48]
Length = 1262
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 273/569 (47%), Positives = 365/569 (64%), Gaps = 69/569 (12%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD- 75
T E+ WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+ + + + ++P + SD
Sbjct: 21 TSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDP 80
Query: 76 ---------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR------- 119
F +YL++P TE DG T LF ARLRNLTYS + D++ R
Sbjct: 81 IIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKET 140
Query: 120 -VIKKGHDGE--------------------------------EVPIMLRSSYCTLYQNSQ 146
V+ +G D + ++P+MLRS C L S
Sbjct: 141 QVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQSD 200
Query: 147 KALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAES 206
+AL ECPYD+GGYF+INGSEKVLIAQE+ + N V VF+K+Q N + AE+ S E
Sbjct: 201 EALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGN-VPWTAEIRSAVEK 259
Query: 207 QNRPPSTIFVPMLSRTSAKGG----SSGQYIHATLPYIRTEIPIIILFRALGFTADEDIL 262
R S+ + + G + G + +A LPYI+TE+P+ I+FRALG +DE+IL
Sbjct: 260 GTRLISSFNIKWAENSLGGPGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEIL 319
Query: 263 EHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQK 318
HI YD DTQM+ELL+PS+EE IQ+++ +I KRGA G TR++ +K+A++I+Q+
Sbjct: 320 SHIVYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIMQR 378
Query: 319 EMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 378
E LPH+ + +T+KAY+FG++IHRLL C LGRR EDDRDH+G KRLDLAGPL+ LFR
Sbjct: 379 EFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFR 438
Query: 379 TLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAG 437
LF KLT DV Y+Q+CV++ D N+Q A+KA IT GLKYSLATGNWG Q AA +AG
Sbjct: 439 ILFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAG 498
Query: 438 VSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 489
VSQVLN TYAST ++ KLAKPRQLHNS WG++CPAETPEGQACGLVKN
Sbjct: 499 VSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKN 558
Query: 490 LALMVYITIGSAAYPILEFLEEWGTENFE 518
L+LM Y+++GS A PI++F+ + + E
Sbjct: 559 LSLMCYVSVGSDATPIIDFMSQRNMQLLE 587
>gi|225562623|gb|EEH10902.1| DNA-dependent RNA polymerase II RPB140 [Ajellomyces capsulatus
G186AR]
Length = 1307
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 270/575 (46%), Positives = 368/575 (64%), Gaps = 67/575 (11%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR-----PE 65
D++E T E+ W VIS++FE KGLV QQLDSFDEF TMQE+V+E + + E
Sbjct: 117 DQDEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPAE 176
Query: 66 SQHNP----GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV- 120
+ +P + F + L++P +TE DG T+ + + ARLRNLTY++PLY+ +TKRV
Sbjct: 177 DEIDPVVLRRYELKFGTVMLARPSVTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 236
Query: 121 ------IKKGHDGEE-------------------------------------VPIMLRSS 137
I + D E+ +PIML+S
Sbjct: 237 EGRERLIAERDDAEQGEEDNDEERRSRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSK 296
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YC L ++++L ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK P+ YV
Sbjct: 297 YCILKDLNEQSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYV 356
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AE+ S E +R S + + + + G G I +TLPYI+T+IPI+++FRALG +
Sbjct: 357 AEIRSAVEKGSRILSQLSIKLFGKGDTSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVS 416
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYA 312
DEDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + EK ++YA
Sbjct: 417 DEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYA 476
Query: 313 KEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL 372
++I+QKE LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KRLDLAGPL
Sbjct: 477 RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 536
Query: 373 LGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNA 431
L LFR LF ++T D+ YVQ+CV+ + + L +KA T++GGLKY+LATGNWG Q A
Sbjct: 537 LANLFRILFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKA 596
Query: 432 AGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQA 483
A ++AGVSQVLN TYAST ++ K+AKPRQLHN+ WG++CPAETPEGQA
Sbjct: 597 ASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQA 656
Query: 484 CGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
CGLVKNLALM IT+G+ + PI++F+ + E E
Sbjct: 657 CGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLE 691
>gi|95115813|gb|ABF56201.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
gi|95115815|gb|ABF56202.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
gi|95115817|gb|ABF56203.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
gi|95115823|gb|ABF56206.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
gi|95115825|gb|ABF56207.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
Length = 1262
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 273/571 (47%), Positives = 365/571 (63%), Gaps = 69/571 (12%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E T E+ WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+ + + + ++P + S
Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78
Query: 75 D----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR----- 119
D F +YL++P TE DG T LF ARLRNLTYS + D++ R
Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138
Query: 120 ---VIKKGHDGE--------------------------------EVPIMLRSSYCTLYQN 144
V+ +G D + ++P+MLRS C L
Sbjct: 139 ETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198
Query: 145 SQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMA 204
S +AL ECPYD+GGYF+INGSEKVLIAQE+ + N V VF+K+Q + AE+ S
Sbjct: 199 SDEALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQ-GSVPWTAEIRSAV 257
Query: 205 ESQNRPPSTIFVPMLSRTSAKGG----SSGQYIHATLPYIRTEIPIIILFRALGFTADED 260
E R S+ + + G + G + +A LPYI+TE+P+ I+FRALG +DE+
Sbjct: 258 EKGTRLISSFNIKWSENSLGGPGQGRRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEE 317
Query: 261 ILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEIL 316
IL HI YD DTQM+ELL+PS+EE IQ+++ +I KRGA G TR++ +K+A++I+
Sbjct: 318 ILSHIVYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIM 376
Query: 317 QKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 376
Q+E LPH+ + +T+KAY+FG++IHRLL C LGRR EDDRDH+G KRLDLAGPL+ L
Sbjct: 377 QREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANL 436
Query: 377 FRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTR 435
FR LF KLT DV Y+Q+CV++ D N+Q A+KA IT GLKYSLATGNWG Q AA +
Sbjct: 437 FRILFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAK 496
Query: 436 AGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLV 487
AGVSQVLN TYAST ++ KLAKPRQLHNS WG++CPAETPEGQACGLV
Sbjct: 497 AGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLV 556
Query: 488 KNLALMVYITIGSAAYPILEFLEEWGTENFE 518
KNL+LM Y+++GS A PI++F+ + + E
Sbjct: 557 KNLSLMCYVSVGSDASPIIDFMSQRNMQLLE 587
>gi|95115819|gb|ABF56204.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
gi|95115821|gb|ABF56205.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
Length = 1262
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 273/571 (47%), Positives = 365/571 (63%), Gaps = 69/571 (12%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E T E+ WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+ + + + ++P + S
Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78
Query: 75 D----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR----- 119
D F +YL++P TE DG T LF ARLRNLTYS + D++ R
Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138
Query: 120 ---VIKKGHDGE--------------------------------EVPIMLRSSYCTLYQN 144
V+ +G D + ++P+MLRS C L
Sbjct: 139 ETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198
Query: 145 SQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMA 204
S +AL ECPYD+GGYF+INGSEKVLIAQE+ + N V VF+K+Q + AE+ S
Sbjct: 199 SDEALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQ-GSVPWTAEIRSAV 257
Query: 205 ESQNRPPSTIFVPMLSRTSAKGG----SSGQYIHATLPYIRTEIPIIILFRALGFTADED 260
E R S+ + + G + G + +A LPYI+TE+P+ I+FRALG +DE+
Sbjct: 258 EKGTRLISSFNIKWSENSLGGPGQGRRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEE 317
Query: 261 ILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEIL 316
IL HI YD DTQM+ELL+PS+EE IQ+++ +I KRGA G TR++ +K+A++I+
Sbjct: 318 ILSHIVYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIM 376
Query: 317 QKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 376
Q+E LPH+ + +T+KAY+FG++IHRLL C LGRR EDDRDH+G KRLDLAGPL+ L
Sbjct: 377 QREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANL 436
Query: 377 FRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTR 435
FR LF KLT DV Y+Q+CV++ D N+Q A+KA IT GLKYSLATGNWG Q AA +
Sbjct: 437 FRILFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAK 496
Query: 436 AGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLV 487
AGVSQVLN TYAST ++ KLAKPRQLHNS WG++CPAETPEGQACGLV
Sbjct: 497 AGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLV 556
Query: 488 KNLALMVYITIGSAAYPILEFLEEWGTENFE 518
KNL+LM Y+++GS A PI++F+ + + E
Sbjct: 557 KNLSLMCYVSVGSDASPIIDFMSQRNMQLLE 587
>gi|82621735|gb|ABB86549.1| second largest subunit of RNA polymerase II [Phaeosphaeria nodorum]
gi|95115801|gb|ABF56195.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
gi|95115803|gb|ABF56196.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
gi|95115805|gb|ABF56197.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
gi|95115807|gb|ABF56198.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
gi|95115809|gb|ABF56199.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
gi|95115811|gb|ABF56200.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
Length = 1262
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 273/571 (47%), Positives = 365/571 (63%), Gaps = 69/571 (12%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E T E+ WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+ + + + ++P + S
Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78
Query: 75 D----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR----- 119
D F +YL++P TE DG T LF ARLRNLTYS + D++ R
Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138
Query: 120 ---VIKKGHDGE--------------------------------EVPIMLRSSYCTLYQN 144
V+ +G D + ++P+MLRS C L
Sbjct: 139 ETQVVVEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198
Query: 145 SQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMA 204
S +AL ECPYD+GGYF+INGSEKVLIAQE+ + N V VF+K+Q N + AE+ S
Sbjct: 199 SDEALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGN-VPWTAEIRSAV 257
Query: 205 ESQNRPPSTIFVPMLSRTSAKGG----SSGQYIHATLPYIRTEIPIIILFRALGFTADED 260
E R S+ + + G + G + +A LPYI+ E+P+ I+FRALG +DE+
Sbjct: 258 EKGTRLISSFNIKWADTSLGNPGQGKRAPGPFAYAMLPYIKQEVPMAIVFRALGIVSDEE 317
Query: 261 ILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEIL 316
IL HI YD DTQM+ELL+PS+EE IQ+++ +I KRGA G TR++ +K+A++I+
Sbjct: 318 ILSHIVYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIM 376
Query: 317 QKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 376
Q+E LPH+ + +T+KAY+FG++IHRLL C LGRR EDDRDH+G KRLDLAGPL+ L
Sbjct: 377 QREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANL 436
Query: 377 FRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTR 435
FR LF KLT DV Y+Q+CV++ D N+Q A+KA IT GLKYSLATGNWG Q AA +
Sbjct: 437 FRILFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAK 496
Query: 436 AGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLV 487
AGVSQVLN TYAST ++ KLAKPRQLHNS WG++CPAETPEGQACGLV
Sbjct: 497 AGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLV 556
Query: 488 KNLALMVYITIGSAAYPILEFLEEWGTENFE 518
KNL+LM Y+++GS A PI++F+ + + E
Sbjct: 557 KNLSLMCYVSVGSDATPIIDFMSQRNMQLLE 587
>gi|325092558|gb|EGC45868.1| DNA-dependent RNA polymerase II RPB140 [Ajellomyces capsulatus H88]
Length = 1307
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 270/575 (46%), Positives = 367/575 (63%), Gaps = 67/575 (11%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR-----PE 65
D++E T E+ W VIS++FE KGLV QQLDSFDEF TMQE+V+E + + E
Sbjct: 117 DQDEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPAE 176
Query: 66 SQHNP----GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV- 120
+ +P + F + L++P MTE DG T+ + + ARLRNLTY++PLY+ +TKRV
Sbjct: 177 DEIDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 236
Query: 121 ------IKKGHDGEE-------------------------------------VPIMLRSS 137
I + D E+ +PIML+S
Sbjct: 237 EGRERLIAERDDAEQGEEDNDEERRSRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSK 296
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YC L ++++L ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK P+ YV
Sbjct: 297 YCILKDLNEQSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYV 356
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AE+ S E +R S + + + + G G I +TLPYI+T+IPI+++FRALG +
Sbjct: 357 AEIRSAVEKGSRILSQLSIKLFGKGDTSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVS 416
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYA 312
DEDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + EK ++YA
Sbjct: 417 DEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYA 476
Query: 313 KEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL 372
++I+QKE LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KRLDLAGPL
Sbjct: 477 RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 536
Query: 373 LGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNA 431
L LFR LF ++T D+ YVQ+CV+ + + L +KA T++ GLKY+LATGNWG Q A
Sbjct: 537 LANLFRILFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSSGLKYALATGNWGEQKKA 596
Query: 432 AGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQA 483
A ++AGVSQVLN TYAST ++ K+AKPRQLHN+ WG++CPAETPEGQA
Sbjct: 597 ASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQA 656
Query: 484 CGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
CGLVKNLALM IT+G+ + PI++F+ + E E
Sbjct: 657 CGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLE 691
>gi|302417061|ref|XP_003006362.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium
albo-atrum VaMs.102]
gi|261355778|gb|EEY18206.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium
albo-atrum VaMs.102]
Length = 1260
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 270/585 (46%), Positives = 376/585 (64%), Gaps = 80/585 (13%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
E+++ T E+ W VIS++F+ KGLV QQ+DSFDEF +T+QE++DE + I + Q N
Sbjct: 15 EEDDASITPEDCWTVISSFFDSKGLVSQQVDSFDEFTTSTVQELIDEYSHITL---DQPN 71
Query: 70 PGQQSD-----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK 118
P SD F + +S+P +TE+DG+ +TL R RNLTY++PLYV +TK
Sbjct: 72 PASDSDRAIALRRYEVKFGTVMVSRPSITEADGKVSTLLPYECRDRNLTYASPLYVRITK 131
Query: 119 RVI------------------KKGHDGEE------------------------------- 129
+V + G GE
Sbjct: 132 KVSIAVENQIPLNELDDEQHDEMGRTGEHPTRLEWEEEESGDDPGADKDKPEDMKDMIFI 191
Query: 130 --VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
+PIM++S C L + S+ L L ECPYD+GGYF+INGSEKVLIAQE+ + N V VFK
Sbjct: 192 GRMPIMVKSKICHLSRESENDLFMLNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFK 251
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
K QP+ ++Y AE+ S E +R S++ + + S++ AKGG GQ IH TLPY++ +IPI
Sbjct: 252 KAQPSPFSYTAEIRSALEKGSRLISSLMLKLHSKSPAKGGV-GQTIHCTLPYVKVDIPIG 310
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRG-ATVG 302
I+FRA G +DEDIL HICYD DTQM+E+LRP +EEAF +Q++ +IGKRG +
Sbjct: 311 IVFRAFGIVSDEDILNHICYDRNDTQMLEMLRPCIEEAFIVQDRNVALDWIGKRGNSNHT 370
Query: 303 VTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYG 362
+TREK ++ AKEILQKE LPH+ + ET+KA++ G++ H+LL CALGRR DDRDH+G
Sbjct: 371 MTREKRVRSAKEILQKETLPHISQSEGSETRKAFFLGYMTHKLLQCALGRRDIDDRDHFG 430
Query: 363 NKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLA 422
KRLDLAGPLL LFRT+ R++ ++ ++++CV++ + +L +K +T++ GLKYSLA
Sbjct: 431 KKRLDLAGPLLAKLFRTIVRRMNQELSGHLKRCVESNRQFSLTLGVKPQTLSNGLKYSLA 490
Query: 423 TGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMM 473
TGNWG Q AA + AGVSQVLN T+AST ++ K+AKPRQLHN+ WG++
Sbjct: 491 TGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLV 550
Query: 474 CPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
CPAETPEGQACGLVKNL+LM Y+++G+ A PI++++ + G E E
Sbjct: 551 CPAETPEGQACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLE 595
>gi|255955085|ref|XP_002568295.1| Pc21g12680 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590006|emb|CAP96165.1| Pc21g12680 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1255
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 265/581 (45%), Positives = 376/581 (64%), Gaps = 70/581 (12%)
Query: 5 EERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRP 64
EE ++ +E T E+ W VIS++F+ KGLV QQLDSFDEF +TMQE+V+E + +
Sbjct: 9 EEDFYDEADEGITSEDCWTVISSFFDSKGLVSQQLDSFDEFISSTMQELVEEQGQVVL-- 66
Query: 65 ESQHNPGQQSD------------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPL 112
Q P + + F + LS+P +TE DG T + + ARLRNLTY++PL
Sbjct: 67 -DQTLPPSEDEIEPIVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPL 125
Query: 113 YVDVTKRVIK-----------KGHDGE------------------------------EVP 131
Y+ VTK++++ ++GE ++P
Sbjct: 126 YLGVTKKIMEGREKIGKPTDDDDNEGESDPKTQGTYLEWETKQLPQEQMKEETVFIGKMP 185
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IML+S YC L ++ +L ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK P
Sbjct: 186 IMLKSKYCILKDLNESSLYAWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPP 245
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFR 251
+ Y+AE+ S E +R S++ + + ++ + G G I +TLPY++ +IPI+++FR
Sbjct: 246 SPTPYIAEIRSAVEKGSRMLSSLTLKLFAKGDSAKGGFGPTIRSTLPYVKADIPIVVVFR 305
Query: 252 ALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTRE 306
ALG +DEDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + +
Sbjct: 306 ALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSNLNHD 365
Query: 307 KMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRL 366
+ ++YA++I+QKE+LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KRL
Sbjct: 366 RRVRYARDIMQKELLPHISQNEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRL 425
Query: 367 DLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNW 426
DLAGPLL LFRTLF ++T D++ YVQ+CV+ +++ L IKA T+TGGLKY+LATGNW
Sbjct: 426 DLAGPLLASLFRTLFTRVTKDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNW 485
Query: 427 G-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAE 477
G Q AA +AGVSQVL+ T+AS+ ++ K+AKPRQLHN+ WG++CPAE
Sbjct: 486 GEQKKAASAKAGVSQVLSRYTFASSLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAE 545
Query: 478 TPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
TPEGQACGLVKNLALM YIT+G+ A PI++F+ + E E
Sbjct: 546 TPEGQACGLVKNLALMCYITVGTPAEPIVDFMIQRNMEVLE 586
>gi|95115791|gb|ABF56190.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. tritici]
Length = 1262
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 272/569 (47%), Positives = 364/569 (63%), Gaps = 69/569 (12%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD- 75
T E+ WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+ + + + ++P + SD
Sbjct: 21 TSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDP 80
Query: 76 ---------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR------- 119
F +YL++P TE DG T LF ARLRNLTYS + D++ R
Sbjct: 81 IIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKET 140
Query: 120 -VIKKGHDGE--------------------------------EVPIMLRSSYCTLYQNSQ 146
V+ +G D + ++P+MLRS C L S
Sbjct: 141 QVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQSD 200
Query: 147 KALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAES 206
+AL ECPYD+GGYF+INGSEKVLIAQE+ + N V VF+K+Q + AE+ S E
Sbjct: 201 EALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQ-GSVPWTAEIRSAVEK 259
Query: 207 QNRPPSTIFVPMLSRTSAKGG----SSGQYIHATLPYIRTEIPIIILFRALGFTADEDIL 262
R S+ + + G + G + +A LPYI+TE+P+ I+FRALG +DE+IL
Sbjct: 260 GTRLISSFNIKWSENSLGGSGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEIL 319
Query: 263 EHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQK 318
HI YD DTQM+ELL+PS+EE IQ+++ +I KRGA G TR++ +K+A++I+Q+
Sbjct: 320 SHIVYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIMQR 378
Query: 319 EMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 378
E LPH+ + +T+KAY+FG++IHRLL C LGRR EDDRDH+G KRLDLAGPL+ LFR
Sbjct: 379 EFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFR 438
Query: 379 TLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAG 437
LF KLT DV Y+Q+CV++ D N+Q A+KA IT GLKYSLATGNWG Q AA +AG
Sbjct: 439 ILFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAG 498
Query: 438 VSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 489
VSQVLN TYAST ++ KLAKPRQLHNS WG++CPAETPEGQACGLVKN
Sbjct: 499 VSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKN 558
Query: 490 LALMVYITIGSAAYPILEFLEEWGTENFE 518
L+LM Y+++GS A PI++F+ + + E
Sbjct: 559 LSLMCYVSVGSDATPIIDFMSQRNMQLLE 587
>gi|449016392|dbj|BAM79794.1| RNA polymerase II second largest subunit [Cyanidioschyzon merolae
strain 10D]
Length = 1184
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 272/550 (49%), Positives = 359/550 (65%), Gaps = 39/550 (7%)
Query: 2 MMEEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIE 61
M + +R E++ + ++ W VISA+F EKGLV+QQLDSF+EF N Q IVDE+ DI
Sbjct: 1 MAKPQRASVSAEDQLSADDIWDVISAHFREKGLVKQQLDSFNEFIGNACQTIVDETPDIV 60
Query: 62 IRPESQHNPGQQS---------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPL 112
+RP+ QH PG+++ F ++ KP TE DG LF ARLRNL+YS+PL
Sbjct: 61 LRPQPQHVPGKRAPPEGTRTIISFGQLSAGKPTFTEVDGTPTVLFPHEARLRNLSYSSPL 120
Query: 113 YVDVTKRVIKKGHDGEE---------------VPIMLRSSYCTLYQNSQKALTELGECPY 157
YV+VT+ I+ +E VP+ML S +C L ++ L +GECPY
Sbjct: 121 YVEVTRIDIEIDPATKEEREFRHPARNLYLGRVPMMLHSDFCHLNGLTEYQLQNIGECPY 180
Query: 158 DEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVP 217
D+GGYFIINGSEK LIAQE+M N VYVFK+ Y++VAE S+ + N+P T V
Sbjct: 181 DQGGYFIINGSEKALIAQERMGNNAVYVFKRASTAPYSHVAECRSVLDRGNKPARTTQVK 240
Query: 218 MLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMEL 277
++R KG SGQ I +LPYIR +IP+ ++FRALG +D +I+E + YD D +M L
Sbjct: 241 -ITRGGVKG-QSGQCIMVSLPYIRADIPLAVVFRALGLESDREIMERVIYDTDDEEMQTL 298
Query: 278 LRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETK 333
L PSL+ I +Q +IGKRG +VG TR++ I+YA+E+LQ E LPH+G G + E
Sbjct: 299 LMPSLDMGSVITDQNLALDFIGKRGNSVGATRDRRIRYAREVLQLEFLPHIGIGAY-EPA 357
Query: 334 KAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQ 393
KA++ G++ H+LL LGRR EDDRDHYG KRLDLAGPLL GLFR LF+K+ D RS +Q
Sbjct: 358 KAWFLGYMTHQLLATVLGRREEDDRDHYGLKRLDLAGPLLTGLFRQLFQKVVKDARSILQ 417
Query: 394 KCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
+D GK++N+ A+K +TIT LKY++ATGNW A R GVSQVLN LTYA++ ++
Sbjct: 418 HQLDMGKELNIALAVKGRTITDNLKYAIATGNWRADRKAAVRTGVSQVLNRLTYAASLSH 477
Query: 454 YLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
KLAKPRQLHN+QWGM+CPAETPEGQ+CGLVKNLALM YI++G+ I
Sbjct: 478 LRRLNSPIGREGKLAKPRQLHNTQWGMICPAETPEGQSCGLVKNLALMAYISVGTPVADI 537
Query: 506 LEFLEEWGTE 515
LE L + E
Sbjct: 538 LEMLYNFEME 547
>gi|95115799|gb|ABF56194.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
Length = 1262
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 272/569 (47%), Positives = 364/569 (63%), Gaps = 69/569 (12%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD- 75
T E+ WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+ + + + ++P + SD
Sbjct: 21 TSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDP 80
Query: 76 ---------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR------- 119
F +YL++P TE DG T LF ARLRNLTYS + D++ R
Sbjct: 81 IIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKET 140
Query: 120 -VIKKGHDGE--------------------------------EVPIMLRSSYCTLYQNSQ 146
V+ +G D + ++P+MLRS C L S
Sbjct: 141 QVVVEGEDEDMEVTTTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQSD 200
Query: 147 KALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAES 206
+AL ECPYD+GGYF+INGSEKVLIAQE+ + N V VF+K+Q + AE+ S E
Sbjct: 201 EALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQ-GSVPWTAEIRSAVEK 259
Query: 207 QNRPPSTIFVPMLSRTSAKGG----SSGQYIHATLPYIRTEIPIIILFRALGFTADEDIL 262
R S+ + + G + G + +A LPYI+TE+P+ I+FRALG +DE+IL
Sbjct: 260 GTRLISSFNIKWSENSLGGSGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEIL 319
Query: 263 EHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQK 318
HI YD DTQM+ELL+PS+EE IQ+++ +I KRGA G TR++ +K+A++I+Q+
Sbjct: 320 SHIVYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIMQR 378
Query: 319 EMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 378
E LPH+ + +T+KAY+FG++IHRLL C LGRR EDDRDH+G KRLDLAGPL+ LFR
Sbjct: 379 EFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFR 438
Query: 379 TLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAG 437
LF KLT DV Y+Q+CV++ D N+Q A+KA IT GLKYSLATGNWG Q AA +AG
Sbjct: 439 ILFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAG 498
Query: 438 VSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 489
VSQVLN TYAST ++ KLAKPRQLHNS WG++CPAETPEGQACGLVKN
Sbjct: 499 VSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKN 558
Query: 490 LALMVYITIGSAAYPILEFLEEWGTENFE 518
L+LM Y+++GS A PI++F+ + + E
Sbjct: 559 LSLMCYVSVGSDATPIIDFMSQRNMQLLE 587
>gi|418204392|gb|AFX61750.1| RNA polymerase II second-largest subunit, partial [Ascosphaera
torchioi]
Length = 1137
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 275/563 (48%), Positives = 364/563 (64%), Gaps = 67/563 (11%)
Query: 23 AVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDE----SADIEIRPESQH-NP----GQQ 73
VIS++FE KGLV QQLDSFDEF TMQE+V+E + D + PE +P +
Sbjct: 1 TVISSFFETKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPEEDEVDPVVLRRYE 60
Query: 74 SDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK----------- 122
F + L +P MTE DG T+ + + ARLRNLTYS+PLY+ +TKR+ +
Sbjct: 61 LKFGTVMLGRPSMTEGDGATSIMLPQEARLRNLTYSSPLYLSITKRITEGRERLISERDD 120
Query: 123 ------------KGH--------------DGEE-------VPIMLRSSYCTLYQNSQKAL 149
KG D EE +PIML+S YC L ++++L
Sbjct: 121 DDQVEDDIDDSGKGRGTYLHWEPKTLADDDPEEENVFIGKMPIMLKSKYCILKDLNEQSL 180
Query: 150 TELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNR 209
ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK P+ YVAE+ S E +R
Sbjct: 181 YNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVEKGSR 240
Query: 210 PPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDF 269
S + + + ++ + G G I +TLPYIRT+IPI+++FRALG +DEDIL HICYD
Sbjct: 241 ILSQLSIKLFAKGDSSKGGFGSTIRSTLPYIRTDIPIVVVFRALGVVSDEDILNHICYDR 300
Query: 270 QDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYAKEILQKEMLPHV 324
DT M+E+L+P +EE F IQ+++ +I KRG + + EK ++YA+EI+QKE LPH+
Sbjct: 301 NDTPMLEMLKPCIEEGFVIQDREVALDFISKRGTSPTTMNHEKRVRYAREIIQKEFLPHI 360
Query: 325 GTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKL 384
+ ET+KA++ G+++HRLL CALGRR DDRDH+G KRLDLAGPLL GLFRTLF +L
Sbjct: 361 SQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLAGLFRTLFMRL 420
Query: 385 TGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLN 443
T D+ YVQ+CV+ + + L +KA T++GGLKY+LATGNWG Q AA ++AGVSQVLN
Sbjct: 421 TKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKAASSKAGVSQVLN 480
Query: 444 CLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY 495
TYAST ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM
Sbjct: 481 RYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCS 540
Query: 496 ITIGSAAYPILEFLEEWGTENFE 518
IT+G+ + PI++F+ + E E
Sbjct: 541 ITVGTPSEPIIDFMIQRNMEVLE 563
>gi|346971009|gb|EGY14461.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium dahliae
VdLs.17]
Length = 1260
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 271/585 (46%), Positives = 376/585 (64%), Gaps = 80/585 (13%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
E+++ T E+ W VIS++F+ KGLV QQ+DSFDEF +T+QE++DE + I + Q N
Sbjct: 15 EEDDASITPEDCWTVISSFFDSKGLVSQQVDSFDEFTTSTVQELIDEYSHITL---DQPN 71
Query: 70 PGQQSD-----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK 118
P SD F + +S+P +TE+DG+ +TL R RNLTY++PLYV +TK
Sbjct: 72 PASDSDRAIALRRYEVKFGTVMVSRPSITEADGKVSTLLPYECRDRNLTYASPLYVRITK 131
Query: 119 RVI-------------KKGHD-----GEE------------------------------- 129
+V + HD GE
Sbjct: 132 KVSIAVENQIPLNELDDEQHDEMARTGEHPTRLEWEEEESGDDPGADKDKPEDMKDMIFI 191
Query: 130 --VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
+PIM++S C L + S+ L L ECPYD+GGYF+INGSEKVLIAQE+ + N V VFK
Sbjct: 192 GRMPIMVKSKICHLSRESENDLFMLNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFK 251
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
K QP+ ++Y AE+ S E +R S++ + + S + AKGG GQ IH TLPY++ +IPI
Sbjct: 252 KAQPSPFSYTAEIRSALEKGSRLISSLMLKLHSTSPAKGGV-GQTIHCTLPYVKVDIPIG 310
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRG-ATVG 302
I+FRA G +DEDIL HICYD DTQM+E+LRP +EEAF +Q++ +IGKRG +
Sbjct: 311 IVFRAFGIVSDEDILNHICYDRNDTQMLEMLRPCIEEAFIVQDRNVALDWIGKRGNSNHT 370
Query: 303 VTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYG 362
+TREK ++ AKEILQKE LPH+ + ET+KA++ G++ H+LL CALGRR DDRDH+G
Sbjct: 371 MTREKRVRSAKEILQKETLPHISQSEGSETRKAFFLGYMTHKLLQCALGRRDIDDRDHFG 430
Query: 363 NKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLA 422
KRLDLAGPLL LFRT+ R++ ++ ++++CV++ + +L +K +T++ GLKYSLA
Sbjct: 431 KKRLDLAGPLLAKLFRTIVRRMNQELSGHLKRCVESNRQFSLTLGVKPQTLSNGLKYSLA 490
Query: 423 TGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMM 473
TGNWG Q AA + AGVSQVLN T+AST ++ K+AKPRQLHN+ WG++
Sbjct: 491 TGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLV 550
Query: 474 CPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
CPAETPEGQACGLVKNL+LM Y+++G+ A PI++++ + G E E
Sbjct: 551 CPAETPEGQACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLE 595
>gi|159487647|ref|XP_001701834.1| DNA-directed RNA polymerase II, 135 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158281053|gb|EDP06809.1| DNA-directed RNA polymerase II, 135 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 1634
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 286/589 (48%), Positives = 366/589 (62%), Gaps = 100/589 (16%)
Query: 6 ERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPE 65
E ++E+E+ E QE++W VI+A+F++KGLVRQQLDSF+EF T+QEI+DE+ +I I+PE
Sbjct: 10 EVVQEEEDTEIVQEDSWNVITAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETPEIVIKPE 69
Query: 66 SQHNPGQQS--------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT 117
SQH PG ++ F ++YLS+P +TE DGE+ LF K ARLRNLTY APLYVDVT
Sbjct: 70 SQHLPGVEAAEEKEYIIKFGQVYLSRPQITEQDGESVVLFPKEARLRNLTYCAPLYVDVT 129
Query: 118 KRVIKKGHDGE--------------EVPIMLRSSYCTLYQNS-QKALTELGE-------- 154
K + + E +VPIML+S C L++ S ++ T LGE
Sbjct: 130 KTEYTRVGENEVEEKTETFSHVHLGKVPIMLKSERCNLHEASTEQEATNLGESYFGAAAC 189
Query: 155 -----CP---------------------------YDEGGYFIINGSEKVLIAQEKMSTNH 182
CP + +GGYF+INGSEKVLIAQE+M+ NH
Sbjct: 190 LIVGTCPGIAHQLAPPLTPLTPALAAPTRSASSAHPQGGYFVINGSEKVLIAQERMANNH 249
Query: 183 VYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRT 242
VYVFKK QP+KY + AE+ S+ E R S++ + ML++ + I A +PYIR
Sbjct: 250 VYVFKKSQPSKYTFCAEIRSVVEGSTRSASSMSIMMLAKGKKA--GAAGVIRAQIPYIRA 307
Query: 243 EIPIIILFRALGFTADEDILEHICYDFQ-DTQMMELLRPSLEEAFFIQNQQ----YIGKR 297
E PI ILFRALGF +D DILEHI YD D M+E LR S+EEA +Q Q+ Y+GKR
Sbjct: 308 EFPIFILFRALGFVSDRDILEHIVYDLDADPAMLEALRSSVEEAQEVQTQEEALNYLGKR 367
Query: 298 GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDD 357
G G ++E F ET+K Y+ G+++HRL+L ALGRR EDD
Sbjct: 368 GTVTGASKE----------------------FMETRKGYFVGYMVHRLMLVALGRRPEDD 405
Query: 358 RDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGL 417
RDHY NKRLDL GPL+ GLFR LFRKL ++R Q+ VD GK++N+ AI K IT GL
Sbjct: 406 RDHYANKRLDLGGPLMAGLFRLLFRKLCKELRMQAQRMVDAGKEINVISAINDKVITRGL 465
Query: 418 KYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQ 469
KYSLATGNWG+ G RAGVSQVL LTYAST ++ KLAKPRQLHNS
Sbjct: 466 KYSLATGNWGEQGKQGIRAGVSQVLARLTYASTLSHLRRVNSPIGREGKLAKPRQLHNSL 525
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
WG+ CPAETPEGQA GLVKN+ALM YIT+G+ + P++ LEE+ TE +
Sbjct: 526 WGIFCPAETPEGQAVGLVKNMALMCYITVGTPSLPVVAHLEEFNTEALD 574
>gi|451846356|gb|EMD59666.1| hypothetical protein COCSADRAFT_252499 [Cochliobolus sativus
ND90Pr]
Length = 1262
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 269/565 (47%), Positives = 363/565 (64%), Gaps = 67/565 (11%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD--- 75
E+ WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+ + + + +NP + +
Sbjct: 25 EDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNTPYNPDEDDNPII 84
Query: 76 -------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVI--KKGHD 126
F +YL++P TE DG T L+ ARLRNLTYS + D+ R++ ++G D
Sbjct: 85 KRRYEIKFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADIENRIMVAREGRD 144
Query: 127 GE--------------------------------------EVPIMLRSSYCTLYQNSQKA 148
E ++P+MLRS C L S
Sbjct: 145 PEGDEDEDMEGGYTGGASQIRWEREDMPMDDGTAARVFIGKLPVMLRSELCHLRAQSDAD 204
Query: 149 LTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQN 208
L L ECPYD+GGYF+INGSEKVLIAQE+ + N V VF+K+Q ++AE+ S E
Sbjct: 205 LFALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQ-GPIPWIAEIRSAVEKGT 263
Query: 209 RPPSTIFVPMLSRTSAKGGS--SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHIC 266
R S+ + + A G G + +ATLPYI+ ++P+ I+FRALG +DE+IL HI
Sbjct: 264 RLISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIV 323
Query: 267 YDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLP 322
YD DTQM+ELL+PS+EE +Q+++ +I KRGA G TR++ +K+A++I+Q+E LP
Sbjct: 324 YDRTDTQMLELLKPSIEEGSVVQDRETALDFIAKRGANSG-TRDRRLKFARDIMQREFLP 382
Query: 323 HVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFR 382
H+ + +T+KAY+FG++IHRLL C LGRR EDDRDH+G KRLDLAGPL+ LFR LF
Sbjct: 383 HISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFL 442
Query: 383 KLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQV 441
KLT DV Y+Q+CV+N +D N+Q A+KA IT GLKYSLATGNWG Q AA +AGVSQV
Sbjct: 443 KLTKDVYKYLQRCVENNQDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQV 502
Query: 442 LNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 493
LN TYAST ++ KLAKPRQLHNS WG++CPAETPEGQACGLVKNL+LM
Sbjct: 503 LNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLM 562
Query: 494 VYITIGSAAYPILEFLEEWGTENFE 518
Y+++GS A PI++F+ + + E
Sbjct: 563 CYVSVGSDASPIIDFMTQRNMQLLE 587
>gi|451994472|gb|EMD86942.1| hypothetical protein COCHEDRAFT_72858 [Cochliobolus heterostrophus
C5]
Length = 1208
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 268/565 (47%), Positives = 363/565 (64%), Gaps = 67/565 (11%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD--- 75
E+ WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+ + + + +NP + +
Sbjct: 25 EDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNTPYNPDEDDNPII 84
Query: 76 -------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVI--KKGHD 126
F +YL++P TE DG T L+ ARLRNLTYS + D+ R++ ++G D
Sbjct: 85 KRRYEIKFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADIENRIMVAREGRD 144
Query: 127 GE--------------------------------------EVPIMLRSSYCTLYQNSQKA 148
E ++P+MLRS C L S
Sbjct: 145 PEGDEDEDMEGGYTGGASQIRWEREDMPMDDGTAARVFIGKLPVMLRSELCHLRAQSDAD 204
Query: 149 LTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQN 208
L L ECPYD+GGYF+INGSEKVLIAQE+ + N V VF+K+Q ++AE+ S E
Sbjct: 205 LFALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQ-GPIPWIAEIRSAVEKGT 263
Query: 209 RPPSTIFVPMLSRTSAKGGS--SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHIC 266
R S+ + + A G G + +ATLPYI+ ++P+ I+FRALG +DE+IL HI
Sbjct: 264 RLISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIV 323
Query: 267 YDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLP 322
YD DTQM+ELL+PS+EE +Q+++ +I KRGA G T+++ +K+A++I+Q+E LP
Sbjct: 324 YDRTDTQMLELLKPSIEEGSVVQDRETALDFIAKRGANSG-TKDRRLKFARDIMQREFLP 382
Query: 323 HVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFR 382
H+ + +T+KAY+FG++IHRLL C LGRR EDDRDH+G KRLDLAGPL+ LFR LF
Sbjct: 383 HISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFL 442
Query: 383 KLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQV 441
KLT DV Y+Q+CV+N +D N+Q A+KA IT GLKYSLATGNWG Q AA +AGVSQV
Sbjct: 443 KLTKDVYKYLQRCVENNQDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQV 502
Query: 442 LNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 493
LN TYAST ++ KLAKPRQLHNS WG++CPAETPEGQACGLVKNL+LM
Sbjct: 503 LNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLM 562
Query: 494 VYITIGSAAYPILEFLEEWGTENFE 518
Y+++GS A PI++F+ + + E
Sbjct: 563 CYVSVGSDASPIIDFMTQRNMQLLE 587
>gi|418204388|gb|AFX61748.1| RNA polymerase II second-largest subunit, partial [Ascosphaera cf.
larvis 64254]
Length = 1110
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 271/570 (47%), Positives = 363/570 (63%), Gaps = 70/570 (12%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDE----SADIEIRP- 64
ED+E+ T E+ W VIS++FE KGLV QQLDS+DEF TMQE+VDE + D + P
Sbjct: 1 EDDEKHITSEDCWTVISSFFEAKGLVSQQLDSYDEFITTTMQELVDEQGQVTVDQTLTPD 60
Query: 65 ESQHNP----GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV 120
E + NP + F + +P MTESDG T + + ARLRNLTYS+P+Y++ TKR+
Sbjct: 61 EDEMNPVVVRRYELKFGTCQIGRPTMTESDGTTTVMLPQEARLRNLTYSSPIYLEFTKRI 120
Query: 121 IK----------------------------------------KGHDGEEV-----PIMLR 135
+ K H E + PIM+R
Sbjct: 121 TEAREVSMAPDAEDEDDEEDERDADLKARGTYLQWEEKQLGPKEHKKENIFIGKMPIMVR 180
Query: 136 SSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA 195
S YC L S+++L ECP+D GGYF+INGSEKVLIAQE+ + N V +F+K P+
Sbjct: 181 SKYCLLRDLSEQSLYNWNECPFDSGGYFVINGSEKVLIAQERSAGNIVQIFQKAPPSPTP 240
Query: 196 YVAEVCSMAESQNRPPSTIFVPMLSRTSAK---GGSSGQYIHATLPYIRTEIPIIILFRA 252
Y+AE+ S E +R S + + + + K GG SG I +TLPY+R +IPI I+FRA
Sbjct: 241 YIAEIRSAIEKGSRILSQLSIKLFKARTEKNTTGGQSGAMIKSTLPYVRDDIPIFIVFRA 300
Query: 253 LGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKM 308
LG +DEDIL HICYD D M+ELL+P+++ IQ ++ +I KRG +T++K
Sbjct: 301 LGVVSDEDILNHICYDPNDLPMLELLKPTIQTCLCIQEREVALDFIAKRGQHPSMTQDKR 360
Query: 309 IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDL 368
I++A++I+QKE LPH+ + ET+KA++FG+++H+LL CALGRR DDRDH+G KRLDL
Sbjct: 361 IRFARDIMQKEFLPHISQSEGSETRKAFFFGYMVHKLLQCALGRRDVDDRDHFGKKRLDL 420
Query: 369 AGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG- 427
AGPLL GLFRTLF +LT D+ YVQ CV+ + L A+K T++GGLKY+LATGNWG
Sbjct: 421 AGPLLAGLFRTLFMRLTKDLNRYVQICVEKNTQLQLNIAVKNGTLSGGLKYALATGNWGE 480
Query: 428 QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETP 479
Q AA ++AGVSQVLN TY+ST ++ K+AKPRQLHN+ WG++CPAETP
Sbjct: 481 QKKAASSKAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 540
Query: 480 EGQACGLVKNLALMVYITIGSAAYPILEFL 509
EGQACGLVKNL+LM IT+G+ A IL+FL
Sbjct: 541 EGQACGLVKNLSLMCTITVGTQATGILDFL 570
>gi|392580422|gb|EIW73549.1| hypothetical protein TREMEDRAFT_70991 [Tremella mesenterica DSM
1558]
Length = 1214
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 276/552 (50%), Positives = 357/552 (64%), Gaps = 54/552 (9%)
Query: 12 EEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPG 71
EEE+ E+ W +IS+YFE KGLVRQQL+SF+EF +NT+QEIVDE+ I + +Q G
Sbjct: 11 EEEQLEGEDYWTIISSYFEGKGLVRQQLESFNEFIENTLQEIVDENPLIILDQHAQFT-G 69
Query: 72 QQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV-IK 122
++ D F +IYL++P TESDG A +F + ARLRNLTYSAPLYV++ +R +
Sbjct: 70 KEGDELRRHQLRFGQIYLARPTTTESDGIAAPMFPQEARLRNLTYSAPLYVEIERRTFVA 129
Query: 123 KGHD---------------GE-----------EVPIMLRSSYCTLYQNSQKALTELGECP 156
G D GE +VP+M+RS +C L ++L L ECP
Sbjct: 130 AGADEDPLDTEWQPLLDAYGEPVVEKTKAFIGKVPVMVRSHFCHLENLPDESLYHLKECP 189
Query: 157 YDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV 216
YD GGYF++ GSEKVLIAQE+M+ N VYVF+K+ P Y Y A V S E + PS V
Sbjct: 190 YDSGGYFVVKGSEKVLIAQERMAANQVYVFRKQSP--YTYFATVTSQMERGGKMPSETEV 247
Query: 217 PMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMME 276
M R+S GG++G IH LPYI+ IPI+I+FRALG AD DILEHIC++ DTQM+E
Sbjct: 248 RMYPRSS--GGTTGSVIHVRLPYIKVPIPIVIVFRALGIIADSDILEHICFNMGDTQMLE 305
Query: 277 LLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET 332
+LRP +EEAF IQ+++ +IG+R TR + A +ILQKE LPHV + E+
Sbjct: 306 MLRPCVEEAFAIQSRETALDFIGRRHNKDIGTRMQRQLVAFDILQKEFLPHVSVSEGFES 365
Query: 333 KKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYV 392
KKAY+ G++IHRL AL RR DDRDH+GNKR+DLAGPLL LFR LF+ LT V ++
Sbjct: 366 KKAYFLGYMIHRLCSAALNRRDLDDRDHFGNKRMDLAGPLLANLFRGLFKNLTKRVHRHL 425
Query: 393 QKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFT 452
C++ + A++ IT G +Y++ATGNWG G R GVSQVLN TYAST +
Sbjct: 426 TTCIEKNRPFVFSEALQPSIITDGFRYAIATGNWGTG--TNRRVGVSQVLNRYTYASTLS 483
Query: 453 YY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYP 504
+ K KPRQLHN+ WGM+CPAETPEG ACGLVKNLAL+ YI++GS A P
Sbjct: 484 HLRRTNTPIDRGSKATKPRQLHNTHWGMVCPAETPEGAACGLVKNLALLSYISVGSYAAP 543
Query: 505 ILEFLEEWGTEN 516
++EFLEEWG E+
Sbjct: 544 VMEFLEEWGLED 555
>gi|418204390|gb|AFX61749.1| RNA polymerase II second-largest subunit, partial [Ascosphaera
larvis]
Length = 1110
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 271/570 (47%), Positives = 363/570 (63%), Gaps = 70/570 (12%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDE----SADIEIRP- 64
ED+E+ T E+ W VIS++FE KGLV QQLDS+DEF TMQE+VDE + D + P
Sbjct: 1 EDDEKHITSEDCWTVISSFFEAKGLVSQQLDSYDEFITTTMQELVDEQGQVTVDQTLTPD 60
Query: 65 ESQHNP----GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV 120
E + NP + F + +P MTESDG T + + ARLRNLTYS+P+Y++ TKR+
Sbjct: 61 EDEMNPVVVRRYELKFGTCQIGRPTMTESDGTTTVMLPQEARLRNLTYSSPIYLEFTKRI 120
Query: 121 IK----------------------------------------KGHDGEEV-----PIMLR 135
+ K H E + PIM+R
Sbjct: 121 TEAREVSMAPDAEDEDDEEDERDADLKARGTYLQWEEKQLGPKEHKKENIFIGKMPIMVR 180
Query: 136 SSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA 195
S YC L S+++L ECP+D GGYF+INGSEKVLIAQE+ + N V +F+K P+
Sbjct: 181 SKYCLLRDLSEQSLYNWNECPFDSGGYFVINGSEKVLIAQERSAGNIVQIFQKAPPSPTP 240
Query: 196 YVAEVCSMAESQNRPPSTIFVPMLSRTSAK---GGSSGQYIHATLPYIRTEIPIIILFRA 252
Y+AE+ S E +R S + + + + K GG SG I +TLPY+R +IPI I+FRA
Sbjct: 241 YIAEIRSAIEKGSRILSQLSIKLFKARTEKNTTGGQSGAMIKSTLPYVRDDIPIFIVFRA 300
Query: 253 LGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKM 308
LG +DEDIL HICYD D M+ELL+P+++ IQ ++ +I KRG +T++K
Sbjct: 301 LGVVSDEDILNHICYDPNDLPMLELLKPTIQTCLCIQEREVALDFIAKRGQHPSMTQDKR 360
Query: 309 IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDL 368
I++A++I+QKE LPH+ + ET+KA++FG+++H+LL CALGRR DDRDH+G KRLDL
Sbjct: 361 IRFARDIMQKEFLPHISQSEGSETRKAFFFGYMVHKLLQCALGRRDVDDRDHFGKKRLDL 420
Query: 369 AGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG- 427
AGPLL GLFRTLF +LT D+ YVQ CV+ + L A+K T++GGLKY+LATGNWG
Sbjct: 421 AGPLLAGLFRTLFMRLTKDLNRYVQICVEKNTQLQLNIAVKNGTLSGGLKYALATGNWGE 480
Query: 428 QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETP 479
Q AA ++AGVSQVLN TY+ST ++ K+AKPRQLHN+ WG++CPAETP
Sbjct: 481 QKKAASSKAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 540
Query: 480 EGQACGLVKNLALMVYITIGSAAYPILEFL 509
EGQACGLVKNL+LM IT+G+ A IL+FL
Sbjct: 541 EGQACGLVKNLSLMCTITVGTQATGILDFL 570
>gi|418204394|gb|AFX61751.1| RNA polymerase II second-largest subunit, partial [Ascosphaera
variegata]
Length = 1110
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 273/570 (47%), Positives = 365/570 (64%), Gaps = 70/570 (12%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDE----SADIEIRP- 64
ED+E+ T E+ W VIS++FE KGLV QQLDS+DEF TMQE+VDE + D + P
Sbjct: 1 EDDEKHITSEDCWTVISSFFEAKGLVSQQLDSYDEFITTTMQELVDEQGQVTVDQTLTPD 60
Query: 65 ESQHNP----GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV 120
E + NP + F + +P MTESDG T + + ARLRNLTYS+P+Y++ TKR+
Sbjct: 61 EDEMNPVVVRRYELKFGTCQIGRPTMTESDGTTTVMLPQEARLRNLTYSSPIYLEFTKRI 120
Query: 121 IK----------------------------------------KGHDGEEV-----PIMLR 135
+ K H E + PIM+R
Sbjct: 121 TEAREVTMAPDAEDEDDEEDERDADLKARGTYLQWEEKKLGPKEHKMENIFIGKMPIMVR 180
Query: 136 SSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA 195
S YC L S++ L ECP+D GGYF+INGSEKVLIAQE+ + N V +F+K P+
Sbjct: 181 SKYCLLRDLSEQRLYNWNECPFDSGGYFVINGSEKVLIAQERSAGNIVQIFQKAPPSPTP 240
Query: 196 YVAEVCSMAESQNRPPSTIFVPML-SRT--SAKGGSSGQYIHATLPYIRTEIPIIILFRA 252
Y+AE+ S E +R S + + + +RT S+ GG SG I +TLPY+R +IPI I+FRA
Sbjct: 241 YIAEIRSAIEKGSRILSQLSIKLFKARTEKSSTGGQSGAMIKSTLPYVRDDIPIFIVFRA 300
Query: 253 LGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKM 308
LG +DEDIL HICYD D M+ELL+P+++ IQ ++ +I KRG +T++K
Sbjct: 301 LGVVSDEDILNHICYDPNDLPMLELLKPTIQTCLCIQEREVALDFIAKRGQHPSMTQDKR 360
Query: 309 IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDL 368
I++A++I+QKE LPH+ + ET+KA++FG+++H+LL CALGRR DDRDH+G KRLDL
Sbjct: 361 IRFARDIMQKEFLPHISQSEGSETRKAFFFGYMVHKLLQCALGRRDVDDRDHFGKKRLDL 420
Query: 369 AGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG- 427
AGPLL GLFRTLF +LT D+ YVQ CV+ + L A+K T++GGLKY+LATGNWG
Sbjct: 421 AGPLLAGLFRTLFMRLTKDLNRYVQICVEKNTQLQLNIAVKNGTLSGGLKYALATGNWGE 480
Query: 428 QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETP 479
Q AA ++AGVSQVLN TY+ST ++ K+AKPRQLHN+ WG++CPAETP
Sbjct: 481 QKKAASSKAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 540
Query: 480 EGQACGLVKNLALMVYITIGSAAYPILEFL 509
EGQACGLVKNL+LM IT+G+ A IL+FL
Sbjct: 541 EGQACGLVKNLSLMCTITVGTQATGILDFL 570
>gi|425773185|gb|EKV11554.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425778788|gb|EKV16893.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1255
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 264/581 (45%), Positives = 375/581 (64%), Gaps = 70/581 (12%)
Query: 5 EERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRP 64
EE ++ +E T E+ W VI+++F+ KGLV QQLDSFDEF +TMQE+V+E + +
Sbjct: 9 EEDFYDEADEGITSEDCWTVITSFFDSKGLVSQQLDSFDEFISSTMQELVEEQGQVVL-- 66
Query: 65 ESQHNPGQQSD------------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPL 112
Q P + + F + LS+P +TE DG T + + ARLRNLTY++PL
Sbjct: 67 -DQTLPPSEDEIEPIVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPL 125
Query: 113 YVDVTKRVIK-----------KGHDGE------------------------------EVP 131
Y+ VTK++++ +DGE ++P
Sbjct: 126 YLGVTKKIMEGRERMGKPNDDDDNDGETDPKTQGTYLEWETKQLPQEQMKEETVFIGKMP 185
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IML+S YC L + +L ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK P
Sbjct: 186 IMLKSKYCILKDLNDASLYAWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPP 245
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFR 251
+ Y+AE+ S E +R S++ + + ++ + G G I +TLPY++ +IPI+++FR
Sbjct: 246 SPTPYIAEIRSAVEKGSRMLSSLTLKLFAKGDSAKGGFGPTIRSTLPYVKADIPIVVVFR 305
Query: 252 ALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTRE 306
ALG +DEDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + +
Sbjct: 306 ALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSNLNHD 365
Query: 307 KMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRL 366
+ ++YA++I+QKE+LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KRL
Sbjct: 366 RRVRYARDIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRL 425
Query: 367 DLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNW 426
DLAGPLL LFRTLF ++T D++ YVQ+CV+ +++ L IKA T+TGGLKY+LATGNW
Sbjct: 426 DLAGPLLASLFRTLFTRVTKDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNW 485
Query: 427 G-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAE 477
G Q AA +AGVSQVL+ T++S+ ++ K+AKPRQLHN+ WG++CPAE
Sbjct: 486 GEQKKAASAKAGVSQVLSRYTFSSSLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAE 545
Query: 478 TPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
TPEGQACGLVKNLALM YIT+G+ A PI++F+ + E E
Sbjct: 546 TPEGQACGLVKNLALMCYITVGTPAEPIVDFMIQRNMEVLE 586
>gi|418204386|gb|AFX61747.1| RNA polymerase II second-largest subunit, partial [Ascosphaera
aggregata]
Length = 1109
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 270/571 (47%), Positives = 365/571 (63%), Gaps = 74/571 (12%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNP 70
D++E T E+ W VIS++FE KGLV QQLDSFDEF TMQE+V+E + + + NP
Sbjct: 1 DDDETITTEDCWTVISSFFETKGLVSQQLDSFDEFATVTMQELVEEQGQVTL--DQTLNP 58
Query: 71 GQQS-----------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR 119
+ F + L++P MTE DG T+ + + ARLRNLTYS+P+Y+ + KR
Sbjct: 59 DEDEVDPVVVRRYELKFGTVSLARPSMTEGDGATSVMLPQEARLRNLTYSSPMYLKIRKR 118
Query: 120 V------------------------------------IKKGHDGEE------VPIMLRSS 137
+ +K+ EE +P+ML+S
Sbjct: 119 ISEGREKLLSQRDEDEEEEEDEDLRAKGTYLQWAEKPLKEDEPAEESIFIGKMPVMLKSR 178
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
YC L +++AL ECPYD GGYFIINGSEKVLIAQE+ + N V +F+K P+ Y+
Sbjct: 179 YCILKDLNEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQIFQKAPPSPTPYI 238
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRT----SAKGG--SSGQYIHATLPYIRTEIPIIILFR 251
AE+ S E +R S + + + S+T SA G S+G I +TLPYIR +IPI+I+FR
Sbjct: 239 AEIRSAVEKGSRILSQLSIKLFSKTFKATSAATGRDSNGPMIKSTLPYIRDDIPIMIVFR 298
Query: 252 ALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREK 307
ALG +DEDIL HICYD D M+ELL+P+++ IQ ++ +I KRG + ++K
Sbjct: 299 ALGVVSDEDILNHICYDPNDLPMLELLKPTIQTCLCIQEREVALDFIAKRGTHQSMAQDK 358
Query: 308 MIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLD 367
I++A++I+QKE LPH+ + ET+KA++FG++IH+LL CALGRR DDRDH+G KRLD
Sbjct: 359 RIRFARDIMQKEFLPHISQSEGSETRKAFFFGYMIHKLLQCALGRRDVDDRDHFGKKRLD 418
Query: 368 LAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG 427
LAGPLL GLFRTLF +LT D+ YVQ+CV+ + ++L IK T++GGLKY+LATGNWG
Sbjct: 419 LAGPLLAGLFRTLFMRLTKDLYRYVQRCVETNRQLHLNIGIKTATLSGGLKYALATGNWG 478
Query: 428 -QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAET 478
Q AA ++AGVSQVLN TY+ST ++ K+AKPRQLHN+ WG++CPAET
Sbjct: 479 EQKKAASSKAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 538
Query: 479 PEGQACGLVKNLALMVYITIGSAAYPILEFL 509
PEGQACGLVKNL+LM IT+GS I+EFL
Sbjct: 539 PEGQACGLVKNLSLMCTITVGSGTAGIIEFL 569
>gi|259485464|tpe|CBF82508.1| TPA: DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q9UV95] [Aspergillus
nidulans FGSC A4]
Length = 1252
Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust.
Identities = 269/577 (46%), Positives = 372/577 (64%), Gaps = 63/577 (10%)
Query: 5 EERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDE----SADI 60
EE +D +E T E+ W VIS++F+ KGLV QQLDSFDEF +T+QE+V+E + D
Sbjct: 9 EEEYYDDMDEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTLQELVEEQGQVTLDQ 68
Query: 61 EIRP-ESQHNP----GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVD 115
I P E + +P + F + LS+PM E DG + ARLRN+TY++PLY+
Sbjct: 69 TIPPSEDEVDPVVVRRYELKFGTVMLSRPMAMEGDGAATIMLPHEARLRNMTYASPLYLG 128
Query: 116 VTKRVIK--------KGHD--GEE------------------------------VPIMLR 135
+ K++++ + D G E +PIML+
Sbjct: 129 IKKKIMEGRERMVGDRDDDDMGNEDRKATGTYLQWEEMALPPDQAKEETVHIGKMPIMLK 188
Query: 136 SSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA 195
S YC L ++AL + ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK P+
Sbjct: 189 SKYCLLRDLGEQALYDWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTP 248
Query: 196 YVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGF 255
YVAE+ S E +R S + + + + + G G I +TLPYI+ +IPI+I+FRALG
Sbjct: 249 YVAEIRSAVEKGSRLLSQLSLKLFGKGDSAKGGFGPTIRSTLPYIKADIPIVIVFRALGV 308
Query: 256 TADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIK 310
+DEDIL HICYD DT M+E+L+P +EE F IQ+++ +I KRG++ + E+ ++
Sbjct: 309 VSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSSMNHERRVR 368
Query: 311 YAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 370
YA+EI+QKE+LPH+ + ET+KA++ G+++HRLL CALGRR DDRDH+G KRLDLAG
Sbjct: 369 YAREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAG 428
Query: 371 PLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QG 429
PLL LFR LF ++T D++ YVQ+CV++ +++ L +KA T+T GL+Y+LATGNWG Q
Sbjct: 429 PLLANLFRVLFTRVTRDLQRYVQRCVESDREIYLNVGLKASTVTQGLRYALATGNWGEQK 488
Query: 430 NAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEG 481
AA +AGVSQVL+ TYAST ++ K+AKPRQLHN+ WG++CPAETPEG
Sbjct: 489 KAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 548
Query: 482 QACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
QACGLVKNLALM YIT+G+ + PI++F+ + E E
Sbjct: 549 QACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 585
>gi|380478926|emb|CCF43324.1| DNA-directed RNA polymerase II subunit RPB2 [Colletotrichum
higginsianum]
Length = 1258
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 263/584 (45%), Positives = 367/584 (62%), Gaps = 78/584 (13%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
E+++ T E+ W VIS++FE KGLV QQ+DSFDEF +T+QE++DE + I + Q N
Sbjct: 14 EEDDTSITPEDCWTVISSFFESKGLVSQQVDSFDEFTSSTVQELIDEYSQITL---DQPN 70
Query: 70 PGQQSD-----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY----- 113
P SD F + +S+P +TE+DG+ TL R RNLTY++PLY
Sbjct: 71 PMSDSDKVIALRRYEVKFGTVMVSRPSITEADGKVTTLLPYECRDRNLTYASPLYVKITK 130
Query: 114 ---VDVTKRVIKKGHDGEE----------------------------------------- 129
+ V K + D E+
Sbjct: 131 KVSIAVEKPIPLNELDEEQQDELANTGEHPTKLEWEEEESGEDYGADKNKSDDMKDMIFI 190
Query: 130 --VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
+PIM++S C L + L L ECPYD+GGYFIINGSEKVLIAQE+ + N V VFK
Sbjct: 191 GRMPIMVKSKICHLSSEQEDDLFMLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFK 250
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
K QP+ Y+Y AE+ S E +R S++ + + S+ A G GQ IH +LPY++ ++PI
Sbjct: 251 KAQPSPYSYTAEIRSALEKGSRLISSMMLKLYSKGDAAKGGYGQTIHCSLPYVKADLPIA 310
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGV 303
I+FRALG +DEDIL HICYD D+QM+E+LRP +EEAF IQ+++ +IGKRG+ +
Sbjct: 311 IVFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCIQDREVALDFIGKRGSNHNI 370
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
REK ++ AK+ILQKE LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G
Sbjct: 371 PREKRVRTAKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDTDDRDHFGK 430
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLAT 423
KRLDLAGPLL LFR + R++ ++ ++++CV++ + +L +K +T++ GLKYSLAT
Sbjct: 431 KRLDLAGPLLAKLFRNIVRRMNQELSGHLKRCVESNRQFSLTLGVKPQTLSNGLKYSLAT 490
Query: 424 GNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMC 474
GNWG Q A + AGVSQVLN T+AST ++ KLAKPRQLHN+ WG++C
Sbjct: 491 GNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVC 550
Query: 475 PAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PAETPEGQACGLVKNL+LM Y+++G+ A PI++++ + G E E
Sbjct: 551 PAETPEGQACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLE 594
>gi|396481244|ref|XP_003841192.1| similar to DNA-dependent RNA polymerase II second largest subunit
[Leptosphaeria maculans JN3]
gi|312217766|emb|CBX97713.1| similar to DNA-dependent RNA polymerase II second largest subunit
[Leptosphaeria maculans JN3]
Length = 1360
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 268/566 (47%), Positives = 365/566 (64%), Gaps = 69/566 (12%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD--- 75
E+ WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+ + + + ++P + +
Sbjct: 122 EDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNTPYDPNEDENPII 181
Query: 76 -------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV-IKKGHD- 126
F +YL++P TE DG T L+ ARLRNLTYS + D++ R+ + + H+
Sbjct: 182 KRRYEITFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADISNRIMVAREHNA 241
Query: 127 -----------------------------GEE----------VPIMLRSSYCTLYQNSQK 147
GEE +P+MLRS C L S
Sbjct: 242 MVEGEDDDLDGGYTAGGATQIRWEREDMPGEEEAAARVFIGKLPVMLRSELCHLRNQSDA 301
Query: 148 ALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQ 207
L L ECPYD+GGYF+INGSEKVLIAQE+ + N V VF+K+Q ++AE+ S E
Sbjct: 302 DLFALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQ-GPIPWIAEIRSAVEKG 360
Query: 208 NRPPSTIFVPMLSRTSAKGGS--SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHI 265
R S+ F + S GG G + +ATLPY+++EIP+ I+FRALG +DE+IL HI
Sbjct: 361 TRLISS-FTIKWAENSLAGGKRVPGPFAYATLPYVKSEIPMAIVFRALGIVSDEEILSHI 419
Query: 266 CYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEML 321
YD DTQM+ELL+PS+EE +Q+++ +I +RGA T+++ +K+A++I+Q+E L
Sbjct: 420 VYDRTDTQMLELLKPSIEEGSVVQDRESALDFIARRGAQ-QATKDRRLKFARDIMQREFL 478
Query: 322 PHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLF 381
PH+ + +T+KAY+FG++IHRLL C LGRR EDDRDH+G KRLDLAGPL+ LFR LF
Sbjct: 479 PHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILF 538
Query: 382 RKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQ 440
KLT DV Y+Q+CV++ +D N+Q A+KA IT GLKYSLATGNWG Q AA +AGVSQ
Sbjct: 539 LKLTKDVFKYLQRCVESNQDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQ 598
Query: 441 VLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 492
VLN TYAST ++ KLAKPRQLHNS WG++CPAETPEGQACGLVKNL+L
Sbjct: 599 VLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSL 658
Query: 493 MVYITIGSAAYPILEFLEEWGTENFE 518
M Y+++GS A PI++F+ + + E
Sbjct: 659 MCYVSVGSDASPIIDFMTQRNMQLLE 684
>gi|408400353|gb|EKJ79435.1| hypothetical protein FPSE_00366 [Fusarium pseudograminearum CS3096]
Length = 1269
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 265/579 (45%), Positives = 372/579 (64%), Gaps = 78/579 (13%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ 72
+E T E+ W VIS++FE KGL QQ DSFDEF Q T+Q++V+E ADI + Q NP
Sbjct: 16 DEGITPEDCWTVISSFFETKGLASQQTDSFDEFTQRTVQDLVNEYADISL---DQQNPPS 72
Query: 73 -----------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVI 121
+ F + +S+P ++E+DG A+L R RNLTYS+P Y+ +TK+V
Sbjct: 73 SYGVPIALRRYEIKFGSVMVSRPSISETDGTVASLLPYECRDRNLTYSSPAYIKITKKVS 132
Query: 122 ---------------------------KKGH-----DGE-------------EVPIMLRS 136
K H DG+ ++PIM++S
Sbjct: 133 VAIDKEIPLHEMDEEQQAEYKRTGEHPTKLHWEVEEDGDSMKEGQPNMIFVGKMPIMVKS 192
Query: 137 SYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAY 196
C L Q++ + L L ECPYD+GGYF+INGSEKVLIAQE+ + N V VFKK QP+ + Y
Sbjct: 193 KICHLSQHTDEELFTLNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPFTY 252
Query: 197 VAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFT 256
AE+ S E +R S++ + +L + + G GQ I +LP++++++P+ I+FRALG
Sbjct: 253 TAEIRSALEKGSRLISSLMMKILGKGDSARGGFGQTIQTSLPFVKSDLPVAIVFRALGVV 312
Query: 257 ADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRG----ATVGVTREKM 308
+DEDIL HICYD D+QM+E+LRP +EEAF +Q+++ +IGKRG A++G REK
Sbjct: 313 SDEDILNHICYDRNDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQASLG--REKR 370
Query: 309 IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDL 368
++ AK+ILQKE LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G KRLDL
Sbjct: 371 VRVAKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDL 430
Query: 369 AGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG- 427
AGPLL LFR + R++ ++ +Y+++CV++ ++ NL AIK T++ GLKYSLATGNWG
Sbjct: 431 AGPLLAKLFRGIIRRMNQELSNYLKRCVESNRNFNLNVAIKPGTLSNGLKYSLATGNWGD 490
Query: 428 QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETP 479
Q AA + AGVSQVLN T+AST ++ KLAKPRQLHN+ WG++CPAETP
Sbjct: 491 QKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETP 550
Query: 480 EGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
EGQACGLVKNL+LM Y+++GS P+++F+ G E E
Sbjct: 551 EGQACGLVKNLSLMCYVSVGSPGEPLIDFMVSRGMEVVE 589
>gi|401884833|gb|EJT48974.1| DNA-directed RNA polymerase II subunit RPB2 [Trichosporon asahii
var. asahii CBS 2479]
Length = 1732
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 275/552 (49%), Positives = 348/552 (63%), Gaps = 75/552 (13%)
Query: 12 EEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPG 71
EEE +QE+ W VI+++F+EKGLVRQQL+SF+EF +NTMQE+VDE+ + + +QH G
Sbjct: 27 EEEPISQEDYWKVINSFFDEKGLVRQQLESFNEFVENTMQELVDENQRLTLDQHTQHT-G 85
Query: 72 QQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKK 123
D F +IYL+K MTE DG+T LF + ARLRNLTY+APLYVD+ K +
Sbjct: 86 VMGDETRRYEITFGQIYLAKVAMTEMDGQTVGLFPQEARLRNLTYAAPLYVDMKKSTLSA 145
Query: 124 G--------------------HDGEE-------VPIMLRSSYCTLYQNSQKALTELGECP 156
G EE VP+M+RS++C L+ L ECP
Sbjct: 146 GDVDDPIEADWKPAVDANGVMQGAEEDKIWIGKVPVMVRSNFCLLHGLPDDHFYALNECP 205
Query: 157 YDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV 216
YD+GGYFIINGSEKVLIAQE+M+ N VYVFKK P+ Y++EV S E + PS V
Sbjct: 206 YDQGGYFIINGSEKVLIAQERMAANTVYVFKKADPSPVIYLSEVTSQMEKGGKTPSKTVV 265
Query: 217 PMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMME 276
M R K ++G I LPY +T+IPI+I+FRALG D D+L HIC++ DT M+E
Sbjct: 266 KMYLRAQDKA-TTGSVIRVQLPYTKTDIPIVIVFRALGIVPDRDVLSHICFNPNDTAMLE 324
Query: 277 LLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET 332
+LRP +EEAF IQ++ +IG+RG TR +
Sbjct: 325 MLRPCIEEAFSIQDRDTALDFIGRRGQQEKGTRA-------------------------S 359
Query: 333 KKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYV 392
+KA++ G++IHRL ALGRR DDRDH+G KRLDLAGPLL LFR LF+KLT DV ++
Sbjct: 360 RKAFFLGYMIHRLCSAALGRRELDDRDHFGKKRLDLAGPLLANLFRILFKKLTRDVYRHL 419
Query: 393 QKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTF 451
QKCV+ K+ L AIK IT GLKYSLATGNWG Q A RAGVSQVLN T+AST
Sbjct: 420 QKCVETHKEFTLVNAIKPGIITNGLKYSLATGNWGDQAKAMQARAGVSQVLNRYTFASTL 479
Query: 452 TYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAY 503
++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YI++GS +
Sbjct: 480 SHLRRTNTPIGRDGKIAKPRQLHNTHWGLICPAETPEGQACGLVKNLALMSYISVGSYSA 539
Query: 504 PILEFLEEWGTE 515
P++EFLEEWG E
Sbjct: 540 PVMEFLEEWGLE 551
>gi|310792957|gb|EFQ28418.1| RNA polymerase Rpb2 [Glomerella graminicola M1.001]
Length = 1259
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 262/584 (44%), Positives = 367/584 (62%), Gaps = 78/584 (13%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
++++ T E+ W VIS++FE KGLV QQ+DSFDEF +T+QE++DE + I + Q N
Sbjct: 15 DEDDTSITPEDCWTVISSFFESKGLVSQQVDSFDEFTSSTVQELIDEYSQITL---DQPN 71
Query: 70 PGQQSD-----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY----- 113
P SD F + +S+P +TE+DG+ TL R RNLTY++PLY
Sbjct: 72 PMSDSDKVIALRRYEVKFGTVMVSRPSITEADGKVTTLLPYECRDRNLTYASPLYVKITK 131
Query: 114 ---VDVTKRVIKKGHDGEE----------------------------------------- 129
+ V K + D E+
Sbjct: 132 KVSIAVEKPIPLNELDEEQQDELANTGEHPTKLEWEEEESGEDYGADKNKSDDMKDMIFI 191
Query: 130 --VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
+PIM++S C L + L L ECPYD+GGYFIINGSEKVLIAQE+ + N V VFK
Sbjct: 192 GRMPIMVKSKICHLSSEQEDDLFMLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFK 251
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
K QP+ Y+Y AE+ S E +R S++ + + S+ A G GQ IH +LPY++ ++PI
Sbjct: 252 KAQPSPYSYTAEIRSALEKGSRLISSMMLKLYSKGDAAKGGYGQTIHCSLPYVKADLPIA 311
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGV 303
I+FRALG +DEDIL HICYD D+QM+E+LRP +EEAF IQ+++ +IGKRG+ +
Sbjct: 312 IVFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCIQDREVALDFIGKRGSNHNI 371
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
REK ++ AK+ILQKE LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G
Sbjct: 372 PREKRVRTAKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDTDDRDHFGK 431
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLAT 423
KRLDLAGPLL LFR + R++ ++ ++++CV++ + +L +K +T++ GLKYSLAT
Sbjct: 432 KRLDLAGPLLAKLFRNIVRRMNQELSGHLKRCVESNRQFSLTLGVKPQTLSNGLKYSLAT 491
Query: 424 GNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMC 474
GNWG Q A + AGVSQVLN T+AST ++ KLAKPRQLHN+ WG++C
Sbjct: 492 GNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVC 551
Query: 475 PAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PAETPEGQACGLVKNL+LM Y+++G+ A PI++++ + G E E
Sbjct: 552 PAETPEGQACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLE 595
>gi|358386392|gb|EHK23988.1| hypothetical protein TRIVIDRAFT_76818 [Trichoderma virens Gv29-8]
Length = 1261
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 261/580 (45%), Positives = 368/580 (63%), Gaps = 72/580 (12%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI-RPESQHN 69
DE+E T E+ W VIS++FE KGLV QQ DSFDEF Q T+Q++V+E + I + +P
Sbjct: 15 DEDEGITPEDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSP 74
Query: 70 PGQ-------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV-- 120
PG+ + F + +S+P ++E+DG +L R RNLTY++PLY+ +TK+V
Sbjct: 75 PGRTIALRRYEIKFGSVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYIKITKKVSA 134
Query: 121 -----------------------------------------IKKGHDGEE------VPIM 133
+ K D ++ +PIM
Sbjct: 135 AVEREVPLHEMDDAQQEEYARTGEHPTKLEWEEEENGEDDNVGKSDDWKDMVFVGKLPIM 194
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
++S C L + +L + ECPYD+GGYF+INGSEKVLIAQE+ + N V VFKK QP+
Sbjct: 195 VKSKICHLSREQDDSLFLVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSA 254
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
Y Y AE+ S E +R S++ + + + + G GQ IH TLP++++++P+ I+FRAL
Sbjct: 255 YTYTAEIRSALEKGSRLISSMMLKLYGKGDSARGGFGQTIHTTLPFVKSDLPVAIVFRAL 314
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGA--TVGVTREK 307
G +DEDIL HICYD D+QM+E+LRP +EEAF +Q+++ +IGKRG G+ REK
Sbjct: 315 GVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQAGLGREK 374
Query: 308 MIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLD 367
++ AK+ILQKE LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G KRLD
Sbjct: 375 RVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLD 434
Query: 368 LAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG 427
LAGPLL LFR + R++ ++ +Y+++CV+ + NL IK T++ GLKYSLATGNWG
Sbjct: 435 LAGPLLAKLFRGIMRRMNTELANYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWG 494
Query: 428 -QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAET 478
Q A + AGVSQVLN T+AST ++ KLAKPRQLHN+ WG++CPAET
Sbjct: 495 DQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAET 554
Query: 479 PEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PEGQACGLVKNL+LM Y+++GS + P++EF+ G E E
Sbjct: 555 PEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVE 594
>gi|340517145|gb|EGR47390.1| beta subunit of DNA-directed RNA polymerase [Trichoderma reesei
QM6a]
Length = 1262
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 261/581 (44%), Positives = 369/581 (63%), Gaps = 73/581 (12%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI-RPESQHN 69
DE+E T E+ W VIS++FE KGLV QQ DSFDEF Q T+Q++V+E + I + +P
Sbjct: 15 DEDEGITPEDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSP 74
Query: 70 PGQ-------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV-- 120
PG+ + F + +S+P ++E+DG +L R RNLTY++PLY+ +TK++
Sbjct: 75 PGRTIALRRYEIKFGSVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYIKITKKLSA 134
Query: 121 ------------------------------------------IKKGHDGEE------VPI 132
I K D ++ +PI
Sbjct: 135 AVEKEIPLHEMDDAQQEEYARTGEAPTKLEWEEEEAGEDDHNIGKSEDWKDMVFVGKLPI 194
Query: 133 MLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN 192
M++S C L + + +L + ECPYD+GGYF+INGSEKVLIAQE+ + N V VFKK QP+
Sbjct: 195 MVKSKICHLSRETDDSLFLVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPS 254
Query: 193 KYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRA 252
Y Y AE+ S E +R S++ + + + + G GQ IH TLP++++++P+ I+FRA
Sbjct: 255 AYTYTAEIRSALEKGSRLISSMMLKLYGKGDSARGGFGQTIHTTLPFVKSDLPVAIVFRA 314
Query: 253 LGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGA--TVGVTRE 306
LG +DEDIL HICYD D+QM+E+LRP +EEAF +Q+++ +IGKRG G+ RE
Sbjct: 315 LGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQAGLGRE 374
Query: 307 KMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRL 366
K ++ AK+ILQKE LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G KRL
Sbjct: 375 KRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRL 434
Query: 367 DLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNW 426
DLAGPLL LFR + R++ ++ +Y+++CV+ + NL IK T++ GLKYSLATGNW
Sbjct: 435 DLAGPLLAKLFRGIMRRMNTELANYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNW 494
Query: 427 G-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAE 477
G Q A + AGVSQVLN T+AST ++ KLAKPRQLHN+ WG++CPAE
Sbjct: 495 GDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAE 554
Query: 478 TPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
TPEGQACGLVKNL+LM Y+++GS + P++EF+ G E E
Sbjct: 555 TPEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVE 595
>gi|302892877|ref|XP_003045320.1| hypothetical protein NECHADRAFT_70495 [Nectria haematococca mpVI
77-13-4]
gi|256726245|gb|EEU39607.1| hypothetical protein NECHADRAFT_70495 [Nectria haematococca mpVI
77-13-4]
Length = 1261
Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust.
Identities = 262/580 (45%), Positives = 367/580 (63%), Gaps = 71/580 (12%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI-RPESQH 68
+D+EE T E+ W VIS++FE KGLV QQ DSFDEF Q T+Q++V+E + I + +P
Sbjct: 15 DDQEEGITPEDCWTVISSFFESKGLVSQQTDSFDEFTQTTIQDLVNEYSVISLDQPNPPS 74
Query: 69 NPG-------QQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV- 120
PG + F + +S+P ++E+DG +L R RNLTY++PLY+ +TK+V
Sbjct: 75 PPGVSIALRRYEIKFGSVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYIKITKKVS 134
Query: 121 ---------------------------------IKKGHDGE--------------EVPIM 133
+++ D E ++PIM
Sbjct: 135 VAVEKEVPLHEMDEDQQAEYKRTGENPTKLVWELEESGDDEGKADDSWKDMVFVGKLPIM 194
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
++S C L L + ECPYD+GGYF+INGSEKVLIAQE+ + N V VFKK QP+
Sbjct: 195 VKSKICHLSSEHDDNLFLVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSP 254
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
Y Y AE+ S E +R S++ + + + + G GQ IH TLP+++ ++P+ I+FRAL
Sbjct: 255 YTYTAEIRSALEKGSRLISSMMLKLYGKGDSARGGFGQTIHTTLPFVKADLPVAIVFRAL 314
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGA--TVGVTREK 307
G +DEDIL HICYD D+QM+E+LRP +EEAF +Q+++ +IGKRG G+ REK
Sbjct: 315 GVVSDEDILNHICYDRTDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQAGLGREK 374
Query: 308 MIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLD 367
++ AK+ILQKE LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G KRLD
Sbjct: 375 RVRVAKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLD 434
Query: 368 LAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG 427
LAGPLL LFR + R++ ++ +Y+++CV+ + NL IK T++ GLKYSLATGNWG
Sbjct: 435 LAGPLLAKLFRGIVRRMNTELSNYLKRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWG 494
Query: 428 -QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAET 478
Q AA + AGVSQVLN T+AST ++ KLAKPRQLHN+ WG++CPAET
Sbjct: 495 DQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAET 554
Query: 479 PEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PEGQACGLVKNL+LM Y+++GS + P++EF+ G E E
Sbjct: 555 PEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVE 594
>gi|358395023|gb|EHK44416.1| hypothetical protein TRIATDRAFT_151043 [Trichoderma atroviride IMI
206040]
Length = 1261
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 261/580 (45%), Positives = 368/580 (63%), Gaps = 72/580 (12%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI-RPESQHN 69
DE+E T E+ W VIS++FE KGLV QQ DSFDEF Q T+Q++V+E + I + +P
Sbjct: 15 DEDEGITPEDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSP 74
Query: 70 PGQ-------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV-- 120
PG+ + F + +S+P ++E+DG +L R RNLTY++PLY+ +TK+V
Sbjct: 75 PGRTIALRRYEIKFGSVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYIKITKKVSA 134
Query: 121 -----------------------------------------IKKGHDGEE------VPIM 133
+ K D ++ +PIM
Sbjct: 135 AVEREVPLHEMDDAQQEQYARTGENPTKLEWEEEENGEDDNLGKSDDWKDMVFVGKLPIM 194
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
++S C L + +L + ECPYD+GGYF+INGSEKVLIAQE+ + N V VFKK QP+
Sbjct: 195 VKSKICHLSREQDDSLFLVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSA 254
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
Y Y AE+ S E +R S++ + + + + G GQ IH TLP++++++P+ I+FRAL
Sbjct: 255 YTYTAEIRSALEKGSRLISSMMLKLYGKGDSARGGFGQTIHTTLPFVKSDLPVAIVFRAL 314
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGA--TVGVTREK 307
G +DEDIL HICYD D+QM+E+LRP +EEAF +Q+++ +IGKRG G+ REK
Sbjct: 315 GVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQAGLGREK 374
Query: 308 MIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLD 367
++ AK+ILQKE LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G KRLD
Sbjct: 375 RVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLD 434
Query: 368 LAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG 427
LAGPLL LFR + R++ ++ +Y+++CV+ + NL IK T++ GLKYSLATGNWG
Sbjct: 435 LAGPLLAKLFRGIMRRMNTELANYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWG 494
Query: 428 -QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAET 478
Q A + AGVSQVLN T+AST ++ KLAKPRQLHN+ WG++CPAET
Sbjct: 495 DQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAET 554
Query: 479 PEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PEGQACGLVKNL+LM Y+++GS + P++EF+ G E E
Sbjct: 555 PEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVE 594
>gi|429863599|gb|ELA38032.1| DNA-directed RNA polymerase ii subunit rpb2 [Colletotrichum
gloeosporioides Nara gc5]
Length = 1259
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 262/583 (44%), Positives = 367/583 (62%), Gaps = 78/583 (13%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNP 70
+E+E T E+ W VIS++FE KGLV QQ+DSFDEF +T+QE++DE + I + Q NP
Sbjct: 15 EEDESITPEDCWTVISSFFESKGLVSQQVDSFDEFTSSTVQELIDEYSQITL---DQPNP 71
Query: 71 GQQSD-----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSA--------- 110
SD F + +S+P +TE+DG+ TL R RNLTY++
Sbjct: 72 MSDSDKVIALRRYEVKFGTVMVSRPSITEADGKVTTLLPYECRDRNLTYASPLYVKITKK 131
Query: 111 ---------PLYVDVTKRVIKKGHDGEE-------------------------------- 129
PL ++ + + GE
Sbjct: 132 VSIAVEKPIPLNELDEEQQEELANTGEHPTKLEWEEEESGEDYGADKNKSDDMKDMIFIG 191
Query: 130 -VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKK 188
+PIM++S C L + L L ECPYD+GGYFIINGSEKVLIAQE+ + N V VFKK
Sbjct: 192 RMPIMVKSKICHLSSEQEDDLFMLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKK 251
Query: 189 RQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIII 248
QP+ Y+Y AE+ S E +R S++ + + S+ A G GQ IH +LPY+++++PI I
Sbjct: 252 AQPSPYSYTAEIRSALEKGSRLISSMMLKLYSKGDAAKGGYGQTIHCSLPYVKSDLPIAI 311
Query: 249 LFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVT 304
+FRALG +DEDIL HICYD D+QM+E+LRP +EEAF IQ+++ +IGKRG+ +
Sbjct: 312 VFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCIQDREVALDFIGKRGSNHNIP 371
Query: 305 REKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNK 364
REK ++ AK+ILQKE LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G K
Sbjct: 372 REKRVRTAKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDTDDRDHFGKK 431
Query: 365 RLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATG 424
RLDLAGPLL LFR + R++ ++ ++++CV++ + +L +K +T++ GLKYSLATG
Sbjct: 432 RLDLAGPLLAKLFRNIVRRMNQELSGHLKRCVESNRQFSLTLGVKPQTLSNGLKYSLATG 491
Query: 425 NWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCP 475
NWG Q AA + AGVSQVLN T+AST ++ KLAKPRQLHN+ WG++CP
Sbjct: 492 NWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCP 551
Query: 476 AETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
AETPEGQACGLVKNL+LM Y+++G+ A PI++++ + G E E
Sbjct: 552 AETPEGQACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLE 594
>gi|300707573|ref|XP_002995989.1| hypothetical protein NCER_100983 [Nosema ceranae BRL01]
gi|239605241|gb|EEQ82318.1| hypothetical protein NCER_100983 [Nosema ceranae BRL01]
Length = 1143
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 258/531 (48%), Positives = 365/531 (68%), Gaps = 41/531 (7%)
Query: 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS--- 74
+E +W +IS +FE+KGLV QQ+DSFD+F + MQE++DES I + +S + G ++
Sbjct: 7 KEYSWDIISKFFEQKGLVGQQIDSFDQFVKTKMQEVIDESPLITV--QSTLSAGNETRKK 64
Query: 75 ---DFAEIYLSKP-MMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV-----IKKGH 125
F +IY+SKP TE+DG T TL ARLR++TY + LY+D+ K + H
Sbjct: 65 ITLKFGQIYVSKPPSYTEADGTTITLTPNEARLRDITYLSQLYIDIVKTTESESGVVDQH 124
Query: 126 DGEEVP-----IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMST 180
+P +M++SSYC+ Y+ S++ L ++GEC YD GGYFIINGSEKV+IAQE+M++
Sbjct: 125 RYSRIPFGSLPVMVKSSYCSTYKLSEEELIKIGECEYDVGGYFIINGSEKVIIAQERMAS 184
Query: 181 NHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYI 240
N +YVFKK QP Y++ AE+ S+ E + PS + S K + I ++PY
Sbjct: 185 NTIYVFKKSQPASYSHYAEIRSVPEKGAKNPSAV--------SLKLCRNPNVIRVSIPYA 236
Query: 241 RTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGK 296
+ EIP+ I++RALGF +D++I +HI D +M +LL+ S+ E+ +Q+Q YIGK
Sbjct: 237 KQEIPLFIIYRALGFLSDKEITDHIITT-NDDEMFDLLKESILESAVVQDQNVALDYIGK 295
Query: 297 RGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAED 356
R A VG +REK I +AK++L KE+LPH+GT +FCETKKAY+ G+++ +LLL ALGR+ ED
Sbjct: 296 RAAPVGSSREKRINFAKDLLAKELLPHIGTQEFCETKKAYFLGYMVQKLLLVALGRKRED 355
Query: 357 DRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGG 416
DRDHYG KR+DLAGPLL LFR+L++KL + ++QKC++ G+D N+ +KA TI G
Sbjct: 356 DRDHYGKKRMDLAGPLLASLFRSLYKKLCSETAKHMQKCIEGGRDFNIALGLKASTIAQG 415
Query: 417 LKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLHN 467
+Y++ATGNWG Q +A ++AGV+QVLN + ST ++ KLAKPRQLHN
Sbjct: 416 FRYAIATGNWGDQAHAMQSKAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAKPRQLHN 475
Query: 468 SQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
+ WGM+CPAETPEGQACGLVKNL+LM YI++GS++ PI+EFLEE G E+ E
Sbjct: 476 THWGMICPAETPEGQACGLVKNLSLMAYISVGSSSEPIVEFLEECGLESLE 526
>gi|44889502|gb|AAS48373.1| RNA polymerase II [Cochliobolus heterostrophus]
Length = 1208
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 268/565 (47%), Positives = 362/565 (64%), Gaps = 67/565 (11%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD--- 75
E+ WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+ + + + +NP + +
Sbjct: 25 EDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNTPYNPDEDDNPII 84
Query: 76 -------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVI--KKGHD 126
F +YL++P TE DG T L+ ARLRNLTYS + D+ R++ ++G D
Sbjct: 85 KRRYEIKFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADIENRIMVAREGRD 144
Query: 127 GE--------------------------------------EVPIMLRSSYCTLYQNSQKA 148
E ++P+MLRS C L S
Sbjct: 145 PEGDEDEDMEGGYTGGASQIRWEREDMPMDDGTAARVFIGKLPVMLRSELCHLRAQSDAD 204
Query: 149 LTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQN 208
L L ECPYD+GGYF+INGSEKVLIAQE+ + N V VF+K+Q ++AE+ S E
Sbjct: 205 LFALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQ-GPIPWIAEIRSAVEKGT 263
Query: 209 RPPSTIFVPMLSRTSAKGGS--SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHIC 266
R S+ + + A G G + +ATLPYI+ ++P+ I+FRALG +DE+IL HI
Sbjct: 264 RLISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIV 323
Query: 267 YDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLP 322
YD DTQM+ELL+PS+EE +Q+++ +I KRGA G T+++ +K+A++I+Q+E LP
Sbjct: 324 YDRTDTQMLELLKPSIEEGSVVQDRETALDFIAKRGANSG-TKDRRLKFARDIMQREFLP 382
Query: 323 HVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFR 382
H+ + +T+KAY+FG++IHRLL C LGRR EDDRDH+G KRLDLAGPL+ LFR LF
Sbjct: 383 HISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFL 442
Query: 383 KLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQV 441
KLT DV Y+Q+CV+N +D N+Q A+KA IT GLKYSLATGNWG Q AA AGVSQV
Sbjct: 443 KLTKDVYKYLQRCVENNQDFNVQMAVKASIITNGLKYSLATGNWGDQKXAASAXAGVSQV 502
Query: 442 LNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 493
LN TYAST ++ KLAKPRQLHNS WG++CPAETPEGQACGLVKNL+LM
Sbjct: 503 LNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLM 562
Query: 494 VYITIGSAAYPILEFLEEWGTENFE 518
Y+++GS A PI++F+ + + E
Sbjct: 563 CYVSVGSDASPIIDFMTQRNMQLLE 587
>gi|326436004|gb|EGD81574.1| DNA-directed RNA polymerase II polypeptide [Salpingoeca sp. ATCC
50818]
Length = 1193
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 268/529 (50%), Positives = 353/529 (66%), Gaps = 35/529 (6%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN-------PGQQS 74
W VI+AYF EKGLVRQQLDSFD F Q +Q+ V++S +EI + Q+ P
Sbjct: 23 WDVINAYFNEKGLVRQQLDSFDHFIQYGIQDAVEKSPALEIEAKPQYTTNEFEEPPSYSV 82
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE------ 128
F E+ LSKP E DG + L+ ARLRNLTY + ++V+ + ++ D E
Sbjct: 83 KFCEVSLSKPTHYEEDGTSHFLYPNDARLRNLTYWSEMFVEA-EETYRETQDSEPETTTT 141
Query: 129 -----EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHV 183
++PIMLRS +C L L L ECP D GGYFIINGSEKVL+AQEKM+ N V
Sbjct: 142 SVHLGKIPIMLRSKFCLLNGKLNDDLYNLNECPLDPGGYFIINGSEKVLLAQEKMAPNTV 201
Query: 184 YVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTE 243
+VF+K+ P KY +V E+ S+ E RPPS++ V +L R S SG +H TLPY+R +
Sbjct: 202 FVFEKKDP-KYLFVTEIKSVLERSPRPPSSLLVKLL-RGSQSAARSGPVLHVTLPYVRQD 259
Query: 244 IPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGA 299
+P++++FRALGF D ILEHI YDF D +MME+L+PSL+EAF IQN+ +IGKR
Sbjct: 260 VPVVVVFRALGFEDDRSILEHIIYDFNDMEMMEMLKPSLDEAFVIQNRDVALDWIGKRAV 319
Query: 300 -TVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDR 358
+ +++E+ I YAK+ILQKE+LPH+G G CETKKA++ G+++HR L AL RR DDR
Sbjct: 320 QSPAISKERRIHYAKDILQKELLPHIGLGPHCETKKAFFLGYMVHRTLQAALRRRQLDDR 379
Query: 359 DHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLK 418
DHYGNKRLD++GPL G LFRTLFR +T ++RSY+QK ++ +++ L + +K I GL+
Sbjct: 380 DHYGNKRLDMSGPLTGFLFRTLFRNVTKELRSYIQKKLNRSEEIKLSAGLNSKQIESGLR 439
Query: 419 YSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQ 469
YS ATGNWG Q A RAGVSQVLN LT+AST ++ + K+AKPRQLHN+
Sbjct: 440 YSFATGNWGTQAKAFEARAGVSQVLNRLTFASTLSHLRRLNSPIERTGKIAKPRQLHNTH 499
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
WG +CPAETPEG A GLVKNLALM +T+G A P+LE L G E+ +
Sbjct: 500 WGYICPAETPEGHAVGLVKNLALMASVTVGGDATPVLELLNSIGMESLD 548
>gi|320592188|gb|EFX04627.1| DNA-dependent RNA polymerase 2 rpb140 [Grosmannia clavigera kw1407]
Length = 1266
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 267/586 (45%), Positives = 369/586 (62%), Gaps = 79/586 (13%)
Query: 9 EEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH 68
E D +E T E++W +ISAYF++K LV QQ+DSF+EF T+Q ++DE + + + Q
Sbjct: 17 EGDLDEGITPEDSWKIISAYFDKKSLVSQQIDSFNEFTTTTVQSLIDEHSLLTL---DQS 73
Query: 69 NPGQQSD-----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT 117
NP SD F I +SKP E DG +TL R RNLTYS P+Y +T
Sbjct: 74 NPPIASDRPVKLRRYEIKFGNIMVSKPQFAEGDGRVSTLTPYECRDRNLTYSCPIYARIT 133
Query: 118 K-------------------------------RVI--------------KKGHDGEE--- 129
K R++ K D ++
Sbjct: 134 KKVSLAVDEPIPDDELDEEQIEEMQRTGEQPTRIVWEEEPSDLPDYEKDKADEDMKDMVF 193
Query: 130 ---VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVF 186
+PIM++S C L + L L ECPYD+GGYFIINGSEKVLIAQE+ + N V VF
Sbjct: 194 MGRLPIMVKSKICHLAYEDEDGLFLLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVF 253
Query: 187 KKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPI 246
KK QP+K++Y AE+ S E +R S++ + ++++ GS GQ +H TLPYI++E+PI
Sbjct: 254 KKAQPSKFSYTAEIRSALEKGSRLISSLSIMLVAKGDTGRGSFGQTVHTTLPYIKSELPI 313
Query: 247 IILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATV- 301
++FRALG +DEDIL HICYD D+QM+E+LRP +EEAF IQ+++ +IGKRG
Sbjct: 314 AVVFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCIQDREVALDFIGKRGQNSH 373
Query: 302 GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHY 361
G++R+ ++ A++ILQKEMLPH+ + CET+KA++ G+++H+LL CALGRR DDRDH+
Sbjct: 374 GISRKDRVRAARDILQKEMLPHISQSEGCETRKAFFLGYMVHKLLQCALGRRDVDDRDHF 433
Query: 362 GNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSL 421
G KRLDLAG LL LFR + RK+ ++ +++++CVD GK +L+ I+ +T+T GLKYSL
Sbjct: 434 GKKRLDLAGSLLAKLFRGIIRKMYQELMNHLKRCVDTGKHFDLRVGIRHQTLTNGLKYSL 493
Query: 422 ATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGM 472
ATGNWG Q A + AGVSQVLN T++ST ++ KLAKPRQLHN+ WG+
Sbjct: 494 ATGNWGDQKKAMSSTAGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGL 553
Query: 473 MCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
+CPAETPEGQACGLVKNL+LM Y+++G+ A PI+EF+ E E
Sbjct: 554 VCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIVEFMIARNMEVLE 599
>gi|413915214|gb|AFW21469.1| RNA polymerase II beta subunit [Balansia obtecta]
Length = 1261
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 260/580 (44%), Positives = 371/580 (63%), Gaps = 72/580 (12%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI-RPESQHN 69
+++E T E+ W VIS++FE KGLV QQ DSFDEF Q T+Q++V+E + I + +P
Sbjct: 15 EDDEGITPEDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSP 74
Query: 70 PGQ-------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVI- 121
PG + F + +S+P ++E+DG +L R RNLTY++PLY+++TK+V
Sbjct: 75 PGMKIALRRYEIKFGTVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYINITKKVSA 134
Query: 122 ---------------------------------KKGHDGEE---------------VPIM 133
++ D +E +PIM
Sbjct: 135 AVEREIPLHEMDDAQQAEYARTRENPTKLVWEQEESPDDDEAGKSEDWKNMVFVGKLPIM 194
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
++S C L + + ++L + ECPYD+GGYF+INGSEKVLIAQE+ + N V VFKK QP+
Sbjct: 195 VKSKICHLSRETDESLFMVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSP 254
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
Y Y AE+ S E +R S++ + + + + G GQ IH TLP++++++PI I+FRAL
Sbjct: 255 YTYTAEIRSALEKGSRLISSLQLKLYGKGDSARGGFGQTIHTTLPFVKSDLPIAIVFRAL 314
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGA--TVGVTREK 307
G +DEDIL HICYD +D+QM+E+LRP +EEAF +Q+++ +IGKRG G+ REK
Sbjct: 315 GVVSDEDILNHICYDRKDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQAGLGREK 374
Query: 308 MIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLD 367
++ AK+ILQKE LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G KRLD
Sbjct: 375 RVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLD 434
Query: 368 LAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG 427
LAGPLL LFR + R++ ++ +Y+++CV+ + NL IK T++ GLKYSLATGNWG
Sbjct: 435 LAGPLLAKLFRGIVRRMNNELSNYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWG 494
Query: 428 -QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAET 478
Q A + AGVSQVLN T+AST ++ KLAKPRQLHN+ WG++CPAET
Sbjct: 495 DQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAET 554
Query: 479 PEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PEGQACGLVKNL+LM Y+++GS + P++EF+ G E E
Sbjct: 555 PEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVE 594
>gi|322699819|gb|EFY91578.1| DNA-dependent RNA polymerase II beta subunit [Metarhizium acridum
CQMa 102]
Length = 1263
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 259/581 (44%), Positives = 372/581 (64%), Gaps = 72/581 (12%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI-RPESQH 68
+D++E T E+ W VIS++F+ KGLV QQ DSFDEF Q T+Q++V+E + I + +P
Sbjct: 16 DDDDEGITPEDCWTVISSFFDTKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPS 75
Query: 69 NPGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV- 120
G++ F + +S+P ++E+DG +L R RNLTY++PLY+++TK+V
Sbjct: 76 AAGEKVALRRYEIKFGTVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYINITKKVS 135
Query: 121 --------IKKGHDGE----------------------------------------EVPI 132
+K+ D + ++PI
Sbjct: 136 RAVEQDIPLKELDDAQREELKRTGEMPTKLVWEVEESAEDDDTGKSEDWKNMVFVGKLPI 195
Query: 133 MLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN 192
M++S C L + + +L + ECPYD+GGYF+INGSEKVLIAQE+ + N V VFKK QP+
Sbjct: 196 MVKSKICHLSREQEDSLFMVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPS 255
Query: 193 KYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRA 252
Y Y AE+ S E +R S++ + + + + G GQ IH TLP++++++PI I+FRA
Sbjct: 256 PYTYTAEIRSALEKGSRLISSLTLKLYGKGDSARGGFGQTIHTTLPFVKSDLPIAIVFRA 315
Query: 253 LGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGA--TVGVTRE 306
LG +DEDIL HICYD +D+QM+E+LRP +EEAF +Q+++ +IGKRG G+ R+
Sbjct: 316 LGVVSDEDILNHICYDRKDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQAGLGRD 375
Query: 307 KMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRL 366
K ++ AK+ILQKE LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G KRL
Sbjct: 376 KRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRL 435
Query: 367 DLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNW 426
DLAGPLL LFR + R++ ++ +Y+++CV+ + NL IK T++ GLKYSLATGNW
Sbjct: 436 DLAGPLLAKLFRGIIRRMNTELSNYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNW 495
Query: 427 G-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAE 477
G Q A + AGVSQVLN T+AST ++ KLAKPRQLHN+ WG++CPAE
Sbjct: 496 GDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAE 555
Query: 478 TPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
TPEGQACGLVKNL+LM Y+++GS A P++EF+ G E E
Sbjct: 556 TPEGQACGLVKNLSLMCYVSVGSPAEPLIEFMINRGMEVVE 596
>gi|322711689|gb|EFZ03262.1| DNA-dependent RNA polymerase II beta subunit [Metarhizium
anisopliae ARSEF 23]
Length = 1262
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 259/580 (44%), Positives = 371/580 (63%), Gaps = 72/580 (12%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI-RPESQHN 69
D++E T E+ W VIS++F+ KGLV QQ DSFDEF Q T+Q++V+E + I + +P
Sbjct: 16 DDDEGITPEDCWTVISSFFDTKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSA 75
Query: 70 PGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV-- 120
G++ F + +S+P ++E+DG +L R RNLTY++PLY+++TK+V
Sbjct: 76 AGEKVALRRYEIKFGTVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYINITKKVSR 135
Query: 121 -------IKKGHDGE----------------------------------------EVPIM 133
+K+ D + ++PIM
Sbjct: 136 AVEQDIPLKELDDAQREELKRTGEMPTKLVWELEESAEDDDTGKSEDWKNMVFVGKLPIM 195
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
++S C L + + +L + ECPYD+GGYF+INGSEKVLIAQE+ + N V VFKK QP+
Sbjct: 196 VKSKICHLSREQEDSLFMVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSP 255
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
Y Y AE+ S E +R S++ + + + + G GQ IH TLP++++++PI I+FRAL
Sbjct: 256 YTYTAEIRSALEKGSRLISSLSLKLYGKGDSARGGFGQTIHTTLPFVKSDLPIAIVFRAL 315
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGA--TVGVTREK 307
G +DEDIL HICYD +D+QM+E+LRP +EEAF +Q+++ +IGKRG G+ R+K
Sbjct: 316 GVVSDEDILNHICYDRKDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQAGLGRDK 375
Query: 308 MIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLD 367
++ AK+ILQKE LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G KRLD
Sbjct: 376 RVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLD 435
Query: 368 LAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG 427
LAGPLL LFR + R++ ++ +Y+++CV+ + NL IK T++ GLKYSLATGNWG
Sbjct: 436 LAGPLLAKLFRGIIRRMNTELSNYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWG 495
Query: 428 -QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAET 478
Q A + AGVSQVLN T+AST ++ KLAKPRQLHN+ WG++CPAET
Sbjct: 496 DQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAET 555
Query: 479 PEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PEGQACGLVKNL+LM Y+++GS A P++EF+ G E E
Sbjct: 556 PEGQACGLVKNLSLMCYVSVGSPAEPLIEFMINRGMEVVE 595
>gi|342888977|gb|EGU88188.1| hypothetical protein FOXB_01326 [Fusarium oxysporum Fo5176]
Length = 1270
Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust.
Identities = 266/581 (45%), Positives = 366/581 (62%), Gaps = 80/581 (13%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ 72
+E T E+ W VIS++FE KGL QQ DSFDEF Q +Q++V+E + I + QHNP
Sbjct: 15 DEGITPEDCWTVISSFFETKGLASQQTDSFDEFTQTMVQDLVNEYSTITL---DQHNPPA 71
Query: 73 -----------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV- 120
+ F + +S+P M+E+DG L R RNLTY+AP Y+ +TK+V
Sbjct: 72 PPGVNIALRRYEIKFGSVMVSRPSMSETDGTVTNLLPYECRDRNLTYAAPTYLKITKKVS 131
Query: 121 ----------------------------------------IKKGHDGEEV------PIML 134
IK + E+ PIM+
Sbjct: 132 VAVDKEIPLHEMDDEQQAEYKRTGENPTKLVWEVEEDAGSIKAEDEPSEMIFIGKMPIMV 191
Query: 135 RSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKY 194
+S C L +S + L L ECPYD+GGYF+INGSEKVLIAQE+ + N V VFKK QP+ Y
Sbjct: 192 KSKICHLSSHSDEDLFMLNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPY 251
Query: 195 AYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALG 254
Y AE+ S E +R S++ + + + + G GQ I ATLP+++ ++P+ I+FRALG
Sbjct: 252 TYTAEIRSALEKGSRLISSLTMKLYGKGDSARGGFGQTIQATLPFVKADLPVAIVFRALG 311
Query: 255 FTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRG----ATVGVTRE 306
+DEDIL HICYD D+QM+E+LRP +EEAF +Q+++ +IGKRG A++G RE
Sbjct: 312 VVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQASLG--RE 369
Query: 307 KMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRL 366
K ++ AK+ILQKE LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G KRL
Sbjct: 370 KRVRVAKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRL 429
Query: 367 DLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNW 426
DLAGPLL LFR + R++ ++ +Y+++CV++ ++ NL AIK T++ GLKYSLATGNW
Sbjct: 430 DLAGPLLAKLFRGIIRRINTELSNYLKRCVESNRNFNLTVAIKPSTLSNGLKYSLATGNW 489
Query: 427 G-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAE 477
G Q AA + AGVSQVLN T+AST ++ KLAKPRQLHN+ WG++CPAE
Sbjct: 490 GDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAE 549
Query: 478 TPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
TPEGQACGLVKNL+LM Y+++GS A P++EF+ G E E
Sbjct: 550 TPEGQACGLVKNLSLMCYVSVGSPADPLIEFMINRGMEVVE 590
>gi|413915216|gb|AFW21470.1| RNA polymerase II beta subunit [Neotyphodium aotearoae]
Length = 1261
Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust.
Identities = 261/580 (45%), Positives = 371/580 (63%), Gaps = 72/580 (12%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI-RPESQHN 69
+++E T E+ W VIS++FE KGLV QQ DSFDEF Q T+Q++V+E + I + +P
Sbjct: 15 EDDEGITPEDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSP 74
Query: 70 PGQ-------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV-- 120
PG + F + +S+P ++E+DG +L R RNLTY++PLY+++TK+V
Sbjct: 75 PGMKIALRRYEIKFGTVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYINITKKVSA 134
Query: 121 -------------------IKKGH--------------DGE--------------EVPIM 133
K G D E ++PIM
Sbjct: 135 AIEREVPLHEMDDAQQAEYAKTGENPTKLIWEQEESPEDDEAGKSEDWKNMVFVGKLPIM 194
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
++S C L + + ++L + ECPYD+GGYF+INGSEKVLIAQE+ + N V VFKK QP+
Sbjct: 195 VKSKICHLSRETDESLFMVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSP 254
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
+ Y AE+ S E +R S++ + + + + G GQ IH TLP++++++PI I+FRAL
Sbjct: 255 FTYTAEIRSALEKGSRLISSLQLKLYGKGDSARGGFGQTIHTTLPFVKSDLPIAIVFRAL 314
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGA--TVGVTREK 307
G +DEDIL HICYD +D+QM+E+LRP +EEAF +Q+++ +IGKRG G+ REK
Sbjct: 315 GVVSDEDILNHICYDRKDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQAGLGREK 374
Query: 308 MIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLD 367
++ AK+ILQKE LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G KRLD
Sbjct: 375 RVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLD 434
Query: 368 LAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG 427
LAGPLL LFR + R++ ++ +Y+++CV+ + NL IK T++ GLKYSLATGNWG
Sbjct: 435 LAGPLLAKLFRGIVRRMNNELSNYLRRCVEGNRHFNLAVGIKPATLSNGLKYSLATGNWG 494
Query: 428 -QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAET 478
Q A + AGVSQVLN T+AST ++ KLAKPRQLHN+ WG++CPAET
Sbjct: 495 DQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAET 554
Query: 479 PEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PEGQACGLVKNL+LM Y+++GS + P++EF+ G E E
Sbjct: 555 PEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVE 594
>gi|229662009|gb|ACQ84444.1| DNA-dependent RNA polymerase II beta subunit [Epichloe festucae]
Length = 1261
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 258/580 (44%), Positives = 371/580 (63%), Gaps = 72/580 (12%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI-RPESQHN 69
+++E T E+ W VIS++FE KGLV QQ DSFDEF Q T+Q++V+E + I + +P
Sbjct: 15 EDDEGITPEDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSP 74
Query: 70 PG-------QQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV-- 120
PG + F + +S+P ++E+DG +L R RNLTY++PLY+++TK+V
Sbjct: 75 PGIKIALRRYEIKFGTVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYINITKKVSA 134
Query: 121 -------IKKGHDGEE----------------------------------------VPIM 133
+ + D ++ +PIM
Sbjct: 135 AIEREVPLHEMDDAQQAEYAKTGENPTKLIWEQEESPEDDDAGKSEDWKNMVFVGKLPIM 194
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
++S C L + + ++L + ECPYD+GGYF+INGSEKVLIAQE+ + N V VFKK QP+
Sbjct: 195 VKSKICHLSRETDESLFMVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSP 254
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
+ Y AE+ S E +R S++ + + + + G GQ IH TLP++++++PI I+FRAL
Sbjct: 255 FTYTAEIRSALEKGSRLISSLQLKLYGKGDSARGGFGQTIHTTLPFVKSDLPIAIVFRAL 314
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGA--TVGVTREK 307
G +DEDIL HICYD +D+QM+E+LRP +EEAF +Q+++ +IGKRG G+ REK
Sbjct: 315 GVVSDEDILNHICYDRKDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQAGLGREK 374
Query: 308 MIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLD 367
++ AK+ILQKE LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G KRLD
Sbjct: 375 RVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLD 434
Query: 368 LAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG 427
LAGPLL LFR + R++ ++ +Y+++CV+ + NL IK T++ GLKYSLATGNWG
Sbjct: 435 LAGPLLAKLFRGIVRRMNNELSNYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWG 494
Query: 428 -QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAET 478
Q A + AGVSQVLN T+AST ++ KLAKPRQLHN+ WG++CPAET
Sbjct: 495 DQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAET 554
Query: 479 PEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PEGQACGLVKNL+LM Y+++GS + P++EF+ G E E
Sbjct: 555 PEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVE 594
>gi|212545975|ref|XP_002153141.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces marneffei ATCC
18224]
gi|210064661|gb|EEA18756.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces marneffei ATCC
18224]
Length = 1254
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 261/565 (46%), Positives = 362/565 (64%), Gaps = 63/565 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ---- 72
T E+ W VIS+YF+ KGLV QQLDSFDEF +TMQE+V+E + I N +
Sbjct: 21 TSEDCWTVISSYFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTIDQTITPNEDEIDPV 80
Query: 73 -----QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK----- 122
+ + I L++P +E +G L AR RNLTY++PLY++V +R+ +
Sbjct: 81 VIRRYEIKYGTIMLARPSFSEINGAATLLLPMEARHRNLTYASPLYLNVQRRLTEGRERK 140
Query: 123 ------KGHDGEE-----------------------------VPIMLRSSYCTLYQNSQK 147
+G + EE +PIML+S YC L S++
Sbjct: 141 AVDREGEGDENEEQKPGGTYLDWEEKPLVVSEEEAKGCYIGRIPIMLKSKYCLLRDLSEQ 200
Query: 148 ALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQ 207
+L ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK P+ Y+AE+ S E
Sbjct: 201 SLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYIAEIRSAVEKG 260
Query: 208 NRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICY 267
+R S + + + ++ + G G I ++LPYI+T+IPI+I+FRALG +DEDIL HICY
Sbjct: 261 SRILSQLSLKLFAKGDSSKGGFGPTIRSSLPYIKTDIPIVIVFRALGVVSDEDILNHICY 320
Query: 268 DFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYAKEILQKEMLP 322
D DT M+E+L+P +EE F IQ+++ +I KRG++ ++ ++ ++YA+EI+QKE LP
Sbjct: 321 DRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSQTSMSHDRRVRYAREIMQKEFLP 380
Query: 323 HVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFR 382
H+ + ET+KA++ G+++H+LL CALGRR DDRDH+G KRLDLAGPLL LFRTLF
Sbjct: 381 HISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLATLFRTLFT 440
Query: 383 KLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQV 441
++T D+ YVQ+CV+ ++V L +K T+TGGLKY+LATGNWG Q A ++AGVSQV
Sbjct: 441 RVTRDLTRYVQRCVETNREVVLNVGLKPATLTGGLKYALATGNWGEQKKAMSSKAGVSQV 500
Query: 442 LNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 493
L+ T+AST ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM
Sbjct: 501 LSRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALM 560
Query: 494 VYITIGSAAYPILEFLEEWGTENFE 518
IT+GS + PI++F+ + E E
Sbjct: 561 CSITVGSPSEPIVDFMIQRNMEVLE 585
>gi|242824711|ref|XP_002488312.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces stipitatus ATCC
10500]
gi|218713233|gb|EED12658.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces stipitatus ATCC
10500]
Length = 1256
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 262/567 (46%), Positives = 360/567 (63%), Gaps = 65/567 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ---- 72
T E+ W VIS+YF+ KGLV QQLDSFDEF +TMQE+V+E + I N +
Sbjct: 21 TSEDCWTVISSYFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTIDQTITPNEDEIDPV 80
Query: 73 -----QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK----- 122
+ + I L++P +E +G L AR RNLTY++PLY++V +R+ +
Sbjct: 81 VIRRYEIKYGTIMLARPSFSEINGAATLLLPMEARHRNLTYASPLYLNVQRRLTEGRERK 140
Query: 123 -KGHDGE------------------------------------EVPIMLRSSYCTLYQNS 145
DGE +PIML+S YC L S
Sbjct: 141 VADRDGEGLGDENEEQKPGGTYLEWEEKPLVISEEEAKGCYIGRIPIMLKSKYCLLRDLS 200
Query: 146 QKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAE 205
+++L ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK P+ YVAE+ S E
Sbjct: 201 EQSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVE 260
Query: 206 SQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHI 265
+R S + + + ++ + G G I ++LPYI+T+IPI+I+FRALG +DEDIL HI
Sbjct: 261 KGSRILSQLSLKLFAKGDSSKGGFGPTIRSSLPYIKTDIPIVIVFRALGVVSDEDILNHI 320
Query: 266 CYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT-VGVTREKMIKYAKEILQKEM 320
CYD DT M+E+L+P +EE F IQ+++ +I KRG++ ++ ++ ++YA+EI+QKE
Sbjct: 321 CYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSQTSMSHDRRVRYAREIMQKEF 380
Query: 321 LPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTL 380
LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G KRLDLAGPLL LFRTL
Sbjct: 381 LPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLATLFRTL 440
Query: 381 FRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVS 439
F ++T D+ YVQ+CV+ ++V L +K T+TGGLKY+LATGNWG Q A ++AGVS
Sbjct: 441 FTRVTRDLTRYVQRCVETNREVVLNVGLKPATLTGGLKYALATGNWGEQKKAMSSKAGVS 500
Query: 440 QVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 491
QVL+ T+AST ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLA
Sbjct: 501 QVLSRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLA 560
Query: 492 LMVYITIGSAAYPILEFLEEWGTENFE 518
LM IT+GS + PI++F+ + E E
Sbjct: 561 LMCSITVGSPSEPIVDFMIQRNMEVLE 587
>gi|429961470|gb|ELA41015.1| DNA-directed RNA polymerase II subunit RPB2 [Vittaforma corneae
ATCC 50505]
Length = 573
Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust.
Identities = 252/539 (46%), Positives = 361/539 (66%), Gaps = 41/539 (7%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
++ ++ ++ W +IS+YFE+KGLVRQQLDSFD+F + MQEIVDE+ I + +S
Sbjct: 8 DNHSQDIQHDDVWTIISSYFEQKGLVRQQLDSFDQFVRVKMQEIVDENPQIIV--QSTPT 65
Query: 70 PGQQS------DFAEIYLSKP-MMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
G + F +IY++KP + TESDG + TL+ AR+R+LTY+ +Y+DVTK V
Sbjct: 66 AGSSAVRRMVIKFGQIYVTKPPVYTESDGRSITLYPSEARIRDLTYACNIYIDVTKIVEN 125
Query: 123 KGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVL 172
+ + +E +PIMLRSS C L+ ++K + ++GECPYD+GGYFI++GSEKV+
Sbjct: 126 EFGERDEHKFSRTSLGQLPIMLRSSCCILHGLTEKDIVQIGECPYDQGGYFIVSGSEKVI 185
Query: 173 IAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQY 232
+AQE+M++N +++FKK QP Y + +E+ S+ E +R PS + ++ + +
Sbjct: 186 VAQERMASNTIHIFKKSQPAPYTHYSEIRSVPEKGSRTPSAFSIKVMR--------NPRV 237
Query: 233 IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ- 291
I A+LP ++ +IPI I++RALGF +D +I+ HI +D D + L PSLEEA +Q+Q
Sbjct: 238 IRASLPLVKQDIPIAIIYRALGFLSDREIISHINFD-NDDAIYSFLAPSLEEASVVQDQL 296
Query: 292 ---QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLC 348
+IGKR A VG R+K +++A+ +L KE LPH+GT +FCETKKAY+ G++I + L
Sbjct: 297 TALDFIGKRSAPVGSPRDKRVQFARNLLAKEFLPHIGTQEFCETKKAYFLGYMISKTLNV 356
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAI 408
L RR DDRDH G KR+DL GPLL LF+ LF+KL + ++QKC++N +D N+ I
Sbjct: 357 VLDRREVDDRDHCGKKRMDLGGPLLASLFKMLFKKLCAETAKHMQKCIENSRDFNIALGI 416
Query: 409 KAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KL 459
K+ TIT G +Y+LATGNWG Q A TRAGV+QVLN + ST ++ KL
Sbjct: 417 KSSTITQGFRYALATGNWGDQARAMQTRAGVAQVLNRYNFLSTLSHLRRVNTPIEKEGKL 476
Query: 460 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
AKPRQLHN+ WG++CPAETPEG ACGLVKNL+LM YI++G ++ PI+E LEE G E E
Sbjct: 477 AKPRQLHNTHWGLICPAETPEGHACGLVKNLSLMAYISVGKSSAPIIEILEECGVERLE 535
>gi|367030607|ref|XP_003664587.1| hypothetical protein MYCTH_2307570 [Myceliophthora thermophila ATCC
42464]
gi|347011857|gb|AEO59342.1| hypothetical protein MYCTH_2307570 [Myceliophthora thermophila ATCC
42464]
Length = 1276
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 269/581 (46%), Positives = 361/581 (62%), Gaps = 77/581 (13%)
Query: 12 EEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPG 71
+E T E+ W VI+AYF+ KGLV QQ+DSFDEF T+Q +VDE AD+ + NPG
Sbjct: 34 DENAITPEDCWEVIAAYFDSKGLVSQQIDSFDEFTSTTIQSLVDEYADLTL---DHPNPG 90
Query: 72 QQS-----------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR- 119
+ F + +SKP +TE+ GET +L R RNLTYSAP+Y V KR
Sbjct: 91 DDAGRDIAMRRYDIHFDNVLISKPTLTEATGETTSLLPYECRDRNLTYSAPMYCRVMKRA 150
Query: 120 -----------------------------VIK------------KGHDGE-------EVP 131
+I+ KG D + ++P
Sbjct: 151 RVAINEEVPLKDMDEEQQEYMARTGEVPKIIRWEEEDTGPSEGAKGDDQKGDLIFLGKLP 210
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
+M++S C L+ +++L L ECPYD+GGYFIINGSEKVLIAQE+ + N V VFKK
Sbjct: 211 VMVKSQVCHLHGEDEESLFLLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPG 270
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFR 251
+Y AE+ S E +R S++ + + ++ S + G + TLPY+R ++ + I+FR
Sbjct: 271 GSVSYQAEIRSALEKGSRLISSLQMKLHTKGSPEKGRLPNTVSVTLPYVREDVSLAIVFR 330
Query: 252 ALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRG-ATVGVTRE 306
ALG +DEDIL HICYD DTQM+E LRP +EEAF IQ+++ +IGKRG G R
Sbjct: 331 ALGIVSDEDILNHICYDRTDTQMLEALRPCIEEAFCIQDREIALDFIGKRGNGNAGQNRV 390
Query: 307 KMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRL 366
++ AKE+LQKEMLPH+ + CET+KA++ G+++H+LL CALGRR DDRDH+G KRL
Sbjct: 391 NRVRAAKELLQKEMLPHISQTEGCETRKAFFLGYMVHKLLQCALGRRDPDDRDHFGKKRL 450
Query: 367 DLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNW 426
DLAGPLL LFR + R++T D+ SY+++C+D K+ +L IK T+T GLKYSLATGNW
Sbjct: 451 DLAGPLLAKLFRGVIRRMTQDLMSYMKRCIDTNKNFSLALGIKHSTLTNGLKYSLATGNW 510
Query: 427 G-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAE 477
G Q A + AGVSQVLN T+AST ++ KLAKPRQLHN+ WG++CPAE
Sbjct: 511 GDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAE 570
Query: 478 TPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
TPEGQACGLVKNL+LM Y+++G+ A PI+EF+ G E E
Sbjct: 571 TPEGQACGLVKNLSLMCYVSVGTPADPIVEFMIARGMEVLE 611
>gi|401407224|ref|XP_003883061.1| DNA-directed RNA polymerase subunit beta [Neospora caninum
Liverpool]
gi|325117477|emb|CBZ53029.1| DNA-directed RNA polymerase subunit beta [Neospora caninum
Liverpool]
Length = 1260
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 271/555 (48%), Positives = 363/555 (65%), Gaps = 43/555 (7%)
Query: 6 ERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPE 65
ER +E ++ Q+ WAV+S++F GLV QQL+SF++F +QEI+DE IEI+P
Sbjct: 77 ERGDEGDQSPVDQDACWAVVSSFFHSHGLVNQQLESFNDFVSYKIQEIIDEHPPIEIKPT 136
Query: 66 SQHNPGQQSDFAEIY--------LSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV- 116
Q+ P ++ + IY L++P + E +G + L+ AR RNLTYS+PLYVDV
Sbjct: 137 PQYRPEEEVESNVIYRLKMDQLSLNRPSVEEKEGISKHLWPYEARTRNLTYSSPLYVDVE 196
Query: 117 -----------TKRVIKKGHDGE----EVPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
+R++ + +P+ML+S+YC + L ++GEC YD+GG
Sbjct: 197 QTTYTVDPETGVERLVDQVTYSRVLLGRIPMMLKSAYCWTKDLPEHDLADVGECAYDQGG 256
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFIING EKVL+AQE+M++N VYVF+K+QP+K+ +VAEV S E + S V SR
Sbjct: 257 YFIINGGEKVLVAQERMASNFVYVFQKKQPSKFGWVAEVRSQKEGM-QATSGFAVKKRSR 315
Query: 222 TS----AKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMEL 277
T AKGG G I A LPYIRTEIPI+ILFRALG +D DIL + YD +D Q++ L
Sbjct: 316 TGEGRGAKGGRPGGQIVAALPYIRTEIPIVILFRALGCISDRDILLRVAYDLKDPQLISL 375
Query: 278 LRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETK 333
++PSLEE F +Q +IGKRG TVG REK I+YA+E+L+KE+LPHVGT CE K
Sbjct: 376 MKPSLEEGFDYGSQDVCLDFIGKRGPTVGAQREKRIQYARELLRKEVLPHVGTEAGCENK 435
Query: 334 KAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQ 393
KA++ G+++HRLLL LGR +DDRDH+G KRLD+AGPL+ F TL+RK+ DVR +Q
Sbjct: 436 KAFFIGYMVHRLLLADLGRINQDDRDHFGKKRLDMAGPLIAASFGTLYRKMIKDVRRILQ 495
Query: 394 KCVDNGKDVNLQFAIK-AKTITGGLKYSLATGNWGQGNAAG-TRAGVSQVLNCLTYASTF 451
+ VD+GK ++ AI+ A IT GL+Y +ATGNWG+ R GV+QVLN LT+AS
Sbjct: 496 RQVDHGKSFDVAGAIRSASQITQGLQYQIATGNWGKDKEGKIVRTGVAQVLNRLTFASAL 555
Query: 452 TYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAY 503
++ K+AKPRQLHN+ WGM+CPAETPEGQA GLVKNLALM I++GSA
Sbjct: 556 SHLRRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMSDISVGSATN 615
Query: 504 PILEFLEEWGTENFE 518
+ EFL EWG + E
Sbjct: 616 TVHEFLVEWGLDPLE 630
>gi|2654279|emb|CAA47069.1| DNA-directed RNA polymerase [Euplotes octocarinatus]
Length = 1194
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 269/554 (48%), Positives = 354/554 (63%), Gaps = 48/554 (8%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNP 70
D ++E TQE+AWAVI AYF++ GLV QQ+ SFD F T+Q+IV E+ I I+PE Q P
Sbjct: 27 DIDDEITQEDAWAVIRAYFDQHGLVSQQISSFDRFLSYTVQDIVTENNTISIQPELQFAP 86
Query: 71 GQQSDFAE-----IYLS------KPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR 119
G ++ E I L KP E D + +F ARLRNLTY LYV+V K+
Sbjct: 87 GSMNESRENIKYDIILGQVRVNEKPRFKEFDDKYNVIFPNEARLRNLTYQTSLYVEVKKQ 146
Query: 120 VIKKGHDGEEV---------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFI 164
DG EV P+M+RS +C+L + E+ EC +D+GGYFI
Sbjct: 147 DKVVEQDGSEVIIDEQTEKEVYMGKVPVMVRSGFCSLNGIDESERWEMKECFHDQGGYFI 206
Query: 165 INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSA 224
ING EKV++A E+M+ N VYVF K+QP+K+++VAEV S ++ NRPP+ + M S+
Sbjct: 207 INGGEKVIVAHERMANNFVYVFHKKQPSKFSWVAEVRSQVDASNRPPNQFSIKMYSKGQR 266
Query: 225 KGGSS-------GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMEL 277
+ G S GQ + A++PYI +IP+ ILFRAL +D++IL+ ICYD D+ MME
Sbjct: 267 RAGGSFSGGKIFGQTLCASIPYINADIPVAILFRALNCISDKEILDRICYDSTDSHMMEA 326
Query: 278 LRPSLEEA--FFIQNQ--QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETK 333
+R SLEE F Q YIG RG GV RE+ I++A+EIL++ LPHV T D CE++
Sbjct: 327 MRASLEEGTPFLTQEDALSYIGSRGTAGGVGREERIRHAREILKRHFLPHVSTKDSCESQ 386
Query: 334 KAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQ 393
K+Y+ G++ HRLL LGR EDDRDHYG KRLD+AG LLG LFR LFR+ + Y++
Sbjct: 387 KSYFIGYMCHRLLNAHLGRIKEDDRDHYGKKRLDMAGSLLGMLFRNLFRRFVKEAGRYLK 446
Query: 394 KCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG--TRAGVSQVLNCLTYASTF 451
D G +N+ A K I+ GLKY+LATGNWG NAAG ++ GVSQVLN LT+AST
Sbjct: 447 AQADKGDSLNITKAFKKDIISDGLKYALATGNWGT-NAAGEVSKTGVSQVLNRLTFASTL 505
Query: 452 TYYL--------SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAY 503
++ S KL KPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM ++++GSAA
Sbjct: 506 SHLRRLNTPLQKSGKLTKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAFVSVGSAAE 565
Query: 504 PILEFLEEWGTENF 517
+ E LE +GTEN
Sbjct: 566 RLREILENYGTENL 579
>gi|336466639|gb|EGO54804.1| DNA-dependent RNA polymerase II RPB140 [Neurospora tetrasperma FGSC
2508]
gi|350286464|gb|EGZ67711.1| DNA-dependent RNA polymerase II RPB140 [Neurospora tetrasperma FGSC
2509]
Length = 1287
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 267/577 (46%), Positives = 359/577 (62%), Gaps = 75/577 (12%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI-RPESQHNPGQQ-- 73
T E++W VIS+YF+ KGLV QQ+DSF+EF +T+Q ++DE AD+ + P + G++
Sbjct: 44 TPEDSWEVISSYFDLKGLVSQQIDSFNEFTTDTVQSLIDEYADLTLDHPSPGDDEGREII 103
Query: 74 -----SDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR--------- 119
F EI +S+P +TE+ GET +L R RNLTYSAP+Y VTKR
Sbjct: 104 LRRYDVHFGEIIISRPTLTEATGETISLLPYECRDRNLTYSAPIYCKVTKRARIAVSEKK 163
Query: 120 ----VIKKGHD-----GE-----------------------------------EVPIMLR 135
+ HD GE ++PIM++
Sbjct: 164 PLNQLTDDEHDHMARTGEHPTALRWIEEESAPPEPPKDDKINPENLKGYLFLGKIPIMVK 223
Query: 136 SSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA 195
S C LY ++L L ECPYD+GGYFIINGSEKVLIAQE+ + N V VFKK +
Sbjct: 224 SKICHLYMEDDESLFTLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVS 283
Query: 196 YVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGF 255
Y AE+ S E +R S++ + + ++ G + TLPY++ E+ + I+FRALG
Sbjct: 284 YQAEIRSALEKGSRLISSLQMRLHTKADQNKGRLANTVSVTLPYVKEEVSLAIVFRALGV 343
Query: 256 TADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRG-ATVGVTREKMIK 310
+DEDIL HICYD +D+QM+E LRP +EEAF IQ+++ YIGKRG + G+ R IK
Sbjct: 344 VSDEDILNHICYDRRDSQMLEALRPCIEEAFCIQDREVALDYIGKRGNGSTGINRNGRIK 403
Query: 311 YAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 370
AKE+LQKE+LPH+ + CET+KA++ G+++H+LL C LGRR DDRDH+G KRLDLAG
Sbjct: 404 AAKEMLQKELLPHISQAEGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAG 463
Query: 371 PLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QG 429
PLL LFR + R+LT D+ Y+++CVD K +L IKA T+T GLKYSLATGNWG Q
Sbjct: 464 PLLAKLFRGIVRRLTQDLMGYMKRCVDTNKHFSLALGIKASTLTNGLKYSLATGNWGDQK 523
Query: 430 NAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEG 481
A + AGVSQVLN T++ST ++ KLAKPRQLHN+ WG++CPAETPEG
Sbjct: 524 KAMSSTAGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEG 583
Query: 482 QACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
QACGLVKNL+LM ++++G+ A PI+EF+ E E
Sbjct: 584 QACGLVKNLSLMCFVSVGTLADPIIEFMIARNMEVLE 620
>gi|28881404|emb|CAD70445.1| DNA-dependent RNA polymerase II RPB140 (RPB2) [Neurospora crassa]
Length = 1287
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 267/577 (46%), Positives = 359/577 (62%), Gaps = 75/577 (12%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI-RPESQHNPGQQ-- 73
T E++W VIS+YF+ KGLV QQ+DSF+EF +T+Q ++DE AD+ + P + G++
Sbjct: 44 TPEDSWEVISSYFDLKGLVSQQIDSFNEFTTDTVQSLIDEYADLTLDHPSPGDDEGREII 103
Query: 74 -----SDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR--------- 119
F EI +S+P +TE+ GET +L R RNLTYSAP+Y VTKR
Sbjct: 104 LRRYDVHFGEIIISRPTLTEATGETISLLPYECRDRNLTYSAPIYCKVTKRARIAVSEKK 163
Query: 120 ----VIKKGHD-----GE-----------------------------------EVPIMLR 135
+ HD GE ++PIM++
Sbjct: 164 PLNQLTDDEHDHMARTGEHPTALRWIEEESAPPEPPKDDKINPENLKGYLFLGKIPIMVK 223
Query: 136 SSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA 195
S C LY ++L L ECPYD+GGYFIINGSEKVLIAQE+ + N V VFKK +
Sbjct: 224 SKICHLYMEDDESLFTLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVS 283
Query: 196 YVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGF 255
Y AE+ S E +R S++ + + ++ G + TLPY++ E+ + I+FRALG
Sbjct: 284 YQAEIRSALEKGSRLISSLQMRLHTKADQNKGRLANTVSVTLPYVKEEVSLAIVFRALGV 343
Query: 256 TADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRG-ATVGVTREKMIK 310
+DEDIL HICYD +D+QM+E LRP +EEAF IQ+++ YIGKRG + G+ R IK
Sbjct: 344 VSDEDILNHICYDRRDSQMLEALRPCIEEAFCIQDREVALDYIGKRGNGSTGINRNGRIK 403
Query: 311 YAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 370
AKE+LQKE+LPH+ + CET+KA++ G+++H+LL C LGRR DDRDH+G KRLDLAG
Sbjct: 404 AAKEMLQKELLPHISQAEGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAG 463
Query: 371 PLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QG 429
PLL LFR + R+LT D+ Y+++CVD K +L IKA T+T GLKYSLATGNWG Q
Sbjct: 464 PLLAKLFRGIVRRLTQDLMGYMKRCVDTNKHFSLALGIKASTLTNGLKYSLATGNWGDQK 523
Query: 430 NAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEG 481
A + AGVSQVLN T++ST ++ KLAKPRQLHN+ WG++CPAETPEG
Sbjct: 524 KAMSSTAGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEG 583
Query: 482 QACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
QACGLVKNL+LM ++++G+ A PI+EF+ E E
Sbjct: 584 QACGLVKNLSLMCFVSVGTLADPIIEFMIARNMEVLE 620
>gi|67623921|ref|XP_668243.1| DNA-directed RNA polymerase II second largest chain
[Cryptosporidium hominis TU502]
gi|54659429|gb|EAL38006.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
[Cryptosporidium hominis]
Length = 733
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 265/546 (48%), Positives = 350/546 (64%), Gaps = 43/546 (7%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
E + +E QE++WA+I YF ++GLV QQL+SF++F +QEIVDE I I P+SQ+
Sbjct: 10 EQKNDEIQQEDSWALIGTYFRDRGLVNQQLESFNDFIMYKLQEIVDEHPPIIITPQSQYR 69
Query: 70 PGQQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVI 121
P +Q D F ++ LS+P + E +G L+ ARLRNLTYS+P++VD ++V
Sbjct: 70 PDEQIDTKVRYVLKFGQLSLSRPSVEEREGVARGLWPNEARLRNLTYSSPVFVDAEQKVY 129
Query: 122 KKGHDGEE---------------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIIN 166
K DG E +PIMLRS YC + S++ L GEC YD+GGYFIIN
Sbjct: 130 KLEDDGSETLVYETVYSRLPLAKIPIMLRSEYCWTHNISERELQSAGECVYDQGGYFIIN 189
Query: 167 GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKG 226
G EKVL+ QE+M+ N VY+F+K QP+KY ++AE+ S NR +
Sbjct: 190 GMEKVLVGQERMANNFVYLFQKSQPSKYTWIAEIRS-----NREGMQATSGFSVKLRGSD 244
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
G+ GQ + ATLPYIRT+IPI ILFRALG +D+DIL YDF DTQM+ LLRPSLEE F
Sbjct: 245 GNQGQIV-ATLPYIRTDIPIAILFRALGVLSDKDILSRCVYDFNDTQMLALLRPSLEETF 303
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
+Q +IGKRG TVG REK I+YAKE+ +KE+LPHVG E++KAY+ G+++
Sbjct: 304 EFFSQDVCLDFIGKRGPTVGAAREKRIQYAKELFEKELLPHVGVTSGSESRKAYFIGYMV 363
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
H+L L ALGR EDDRDH+G KRLDLAGPL+ F FRK+ DVR +Q+ +DNGK+
Sbjct: 364 HKLCLGALGRVPEDDRDHFGKKRLDLAGPLVAASFGQCFRKMMKDVRRLLQRNIDNGKEF 423
Query: 403 NLQFAIK-AKTITGGLKYSLATGNWGQG-NAAGTRAGVSQVLNCLTYASTFTYYLSW--- 457
++ I+ A IT ++Y ATGNWG+ + R GVSQVL+ LT+ S +Y
Sbjct: 424 DVAGVIRSASYITQTIQYQFATGNWGKDKDGKIIRTGVSQVLSRLTFTSALSYLRRLNTP 483
Query: 458 -----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEW 512
K AKPRQLHN+ WGM+CPAETPEG + GLVKNLALM I++G Y I FL+EW
Sbjct: 484 LGREGKFAKPRQLHNTHWGMICPAETPEGHSVGLVKNLALMCEISVGYRPYAIRTFLDEW 543
Query: 513 GTENFE 518
G ++ +
Sbjct: 544 GMDSID 549
>gi|66363138|ref|XP_628535.1| RNA polymerase beta subunit [Cryptosporidium parvum Iowa II]
gi|46229549|gb|EAK90367.1| RNA polymerase beta subunit [Cryptosporidium parvum Iowa II]
Length = 1177
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 265/548 (48%), Positives = 351/548 (64%), Gaps = 43/548 (7%)
Query: 8 LEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQ 67
+ E + +E QE++WA+I YF ++GLV QQL+SF++F +QEIVDE I I P+SQ
Sbjct: 8 VSEQKNDEIQQEDSWALIGTYFRDRGLVNQQLESFNDFIMYKLQEIVDEHPPIIITPQSQ 67
Query: 68 HNPGQQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR 119
+ P +Q D F ++ LS+P + E +G L+ ARLRNLTYS+P++VD ++
Sbjct: 68 YRPDEQIDTKVRYVLKFGQLSLSRPSVEEREGVARGLWPNEARLRNLTYSSPVFVDAEQK 127
Query: 120 VIKKGHDGEE---------------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFI 164
V K DG E +PIMLRS YC + S++ L GEC YD+GGYFI
Sbjct: 128 VYKLEDDGSETLVYETVYSRLPLAKIPIMLRSEYCWTHNISERELQSAGECVYDQGGYFI 187
Query: 165 INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSA 224
ING EKVL+ QE+M+ N VY+F+K QP+KY ++AE+ S NR +
Sbjct: 188 INGMEKVLVGQERMANNFVYLFQKNQPSKYTWIAEIRS-----NREGMQATSGFSVKLRG 242
Query: 225 KGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEE 284
G+ GQ + ATLPYIRT+IPI ILFRALG +D+DIL YDF DTQM+ LLRPSLEE
Sbjct: 243 SDGNQGQIV-ATLPYIRTDIPIAILFRALGVLSDKDILSRCVYDFNDTQMLALLRPSLEE 301
Query: 285 AFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGH 340
F +Q +IGKRG TVG REK I+YAKE+ +KE+LPHVG E++KAY+ G+
Sbjct: 302 TFEFFSQDVCLDFIGKRGPTVGAAREKRIQYAKELFEKELLPHVGVTSGSESRKAYFIGY 361
Query: 341 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK 400
++H+L L ALGR EDDRDH+G KRLDLAGPL+ F FRK+ DVR +Q+ +DNGK
Sbjct: 362 MVHKLCLGALGRVPEDDRDHFGKKRLDLAGPLVAASFGQCFRKMMKDVRRLLQRNIDNGK 421
Query: 401 DVNLQFAIK-AKTITGGLKYSLATGNWGQG-NAAGTRAGVSQVLNCLTYASTFTYYLSW- 457
+ ++ I+ A IT ++Y ATGNWG+ + R GVSQVL+ LT+ S +Y
Sbjct: 422 EFDVAGVIRSASYITQTIQYQFATGNWGKDKDGKIIRTGVSQVLSRLTFTSALSYLRRLN 481
Query: 458 -------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLE 510
K AKPRQLHN+ WGM+CPAETPEG + GLVKNLALM I++G Y I FL+
Sbjct: 482 TPLGREGKFAKPRQLHNTHWGMICPAETPEGHSVGLVKNLALMCEISVGYRPYAIRTFLD 541
Query: 511 EWGTENFE 518
EWG ++ +
Sbjct: 542 EWGMDSID 549
>gi|237831495|ref|XP_002365045.1| DNA-directed RNA polymerase II subunit RPB2, putative [Toxoplasma
gondii ME49]
gi|211962709|gb|EEA97904.1| DNA-directed RNA polymerase II subunit RPB2, putative [Toxoplasma
gondii ME49]
gi|221487105|gb|EEE25351.1| DNA-directed RNA polymerase II subunit, putative [Toxoplasma gondii
GT1]
gi|221506791|gb|EEE32408.1| DNA-directed RNA polymerase II subunit, putative [Toxoplasma gondii
VEG]
Length = 1259
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 270/542 (49%), Positives = 354/542 (65%), Gaps = 42/542 (7%)
Query: 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFA 77
Q+ WAV+S++F GLV QQL+SF++F +QEI+DE IEIRP Q+ P ++ +
Sbjct: 88 QDACWAVVSSFFHSHGLVNQQLESFNDFVSYKIQEIIDEHPPIEIRPTPQYRPEEEVESN 147
Query: 78 EIY--------LSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV--TKRVIKKGHDG 127
IY L++P + E +G + L+ AR RNLTYS+PLYVDV T +
Sbjct: 148 VIYRLKMDQLSLNRPSVEEKEGISKHLWPYEARTRNLTYSSPLYVDVEQTTYTVDPETGA 207
Query: 128 EE--------------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLI 173
E +P+ML+S+YC + L ++GEC YD+GGYFIING EKVL+
Sbjct: 208 ERLVDQVTYSRVLLGRIPMMLKSAYCWTKDLPEHDLADVGECAYDQGGYFIINGGEKVLV 267
Query: 174 AQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSA---KGGSSG 230
AQE+M++N VYVF+K+QP+K+ +VAEV S E + S V SRT KGG G
Sbjct: 268 AQERMASNFVYVFQKKQPSKFGWVAEVRSQKEGM-QATSGFAVKKRSRTGGEGRKGGRPG 326
Query: 231 QYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQN 290
I A LPYIRTEIPI+ILFRALG +D DIL + YD +D Q++ L++PSLEE F +
Sbjct: 327 GQIVAALPYIRTEIPIVILFRALGCISDRDILLRVAYDLKDPQLIALMKPSLEEGFDYSS 386
Query: 291 QQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLL 346
Q +IGKRG TVG REK I+YA+E+L+KE+LPHVGT CE KKA+Y G+++HRLL
Sbjct: 387 QDVCLDFIGKRGPTVGAQREKRIQYARELLRKEVLPHVGTEVGCENKKAFYIGYMVHRLL 446
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQF 406
L LGR +DDRDH+G KRLD+AGPL+ F TL+RK+ DVR +Q+ VD+GK ++
Sbjct: 447 LADLGRINQDDRDHFGKKRLDMAGPLIAASFGTLYRKMIKDVRRILQRQVDHGKSFDVAG 506
Query: 407 AIK-AKTITGGLKYSLATGNWGQGNAAG-TRAGVSQVLNCLTYASTFTYYLSW------- 457
AI+ A IT GL+Y +ATGNWG+ R GV+QVLN LT+AS ++
Sbjct: 507 AIRSASQITQGLQYQIATGNWGKDKEGKIVRTGVAQVLNRLTFASALSHLRRLNTPLGRE 566
Query: 458 -KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
K+AKPRQLHN+ WGM+CPAETPEGQA GLVKNLALM I++GSA + EFL EWG +
Sbjct: 567 GKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMSDISVGSATNTVHEFLVEWGLDP 626
Query: 517 FE 518
E
Sbjct: 627 LE 628
>gi|323449816|gb|EGB05701.1| hypothetical protein AURANDRAFT_38329 [Aureococcus anophagefferens]
Length = 1233
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 247/401 (61%), Positives = 307/401 (76%), Gaps = 14/401 (3%)
Query: 130 VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
VPIMLRS +C L S K L ELGEC YD+GGYF+INGSEKV++AQE+MS NHVY F+K+
Sbjct: 202 VPIMLRSRFCVLADKSDKELCELGECIYDQGGYFVINGSEKVVVAQERMSNNHVYCFRKK 261
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
QP+KY++V E S E RP STI++ M ++ + +G S G I TLPY+R ++P+I++
Sbjct: 262 QPHKYSWVVECRSHVEHGARPTSTIYMQMYNK-AGRGQSQGNQIRVTLPYVRVDVPVIVV 320
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ----QYIGKRGATVGVTR 305
FRALGF AD DILEH+ YDF DT+MME LRPSL+EAF IQNQ +IG+RG+ + R
Sbjct: 321 FRALGFVADRDILEHVVYDFSDTEMMERLRPSLDEAFVIQNQTIALDFIGRRGSATNIGR 380
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
K ++YAKE+LQKE+LPHVGT + +TKKA++ G+I+H+LL+C+L R EDDRDHYG KR
Sbjct: 381 SKRVQYAKELLQKEVLPHVGTEEQSDTKKAFFVGYIVHKLLMCSLERIDEDDRDHYGKKR 440
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGN 425
LDLAGPLLGGLFR LFRKLT DV +Y+QKC+D+G+D NL AIK++ +T GL+YSLATGN
Sbjct: 441 LDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDDGRDFNLASAIKSRVVTDGLRYSLATGN 500
Query: 426 WGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAE 477
WG A +RAGVSQVLN LTYAST ++ K AKPRQLHN+ WG +CPAE
Sbjct: 501 WGDRKDA-SRAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAE 559
Query: 478 TPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
TPEGQA GLVKNLALM Y+++GS PILEFLEEW EN E
Sbjct: 560 TPEGQAVGLVKNLALMSYVSVGSPQSPILEFLEEWSMENLE 600
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/111 (57%), Positives = 85/111 (76%), Gaps = 8/111 (7%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E TQE+AW VISAYF EKGLVRQQLDSFDEF QNTMQE+VD+S ++ ++PE+Q+ PGQ +
Sbjct: 2 EITQEDAWTVISAYFAEKGLVRQQLDSFDEFIQNTMQELVDDSGELVVKPEAQYAPGQLA 61
Query: 75 D--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT 117
F ++Y+SKP TE DG T+ +F ARLRN+TY++P+YVD++
Sbjct: 62 ATPSTYFVLFNQVYVSKPTATEKDGTTSNMFPHEARLRNMTYASPMYVDIS 112
>gi|171677674|ref|XP_001903788.1| hypothetical protein [Podospora anserina S mat+]
gi|170936905|emb|CAP61564.1| unnamed protein product [Podospora anserina S mat+]
Length = 1278
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 266/584 (45%), Positives = 358/584 (61%), Gaps = 78/584 (13%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
+ +E T E+ W VISAYF+ KGLV QQ+DSFDEF +T+Q +VDE AD+ + N
Sbjct: 33 DQDEAAITPEDCWDVISAYFDMKGLVSQQIDSFDEFTSSTIQSLVDEYADLTL---DHPN 89
Query: 70 PGQQS-----------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK 118
PG F + +SKP +TE GET +L R RNLTYSAP+Y V+K
Sbjct: 90 PGDDQGRDIALRRYDIHFGNVMISKPTLTEISGETTSLLPYECRDRNLTYSAPMYCKVSK 149
Query: 119 R----------------------------------------VIKKGHDGE---------- 128
R + +G GE
Sbjct: 150 RARVAINEPVPLNELDDEQHELMRETGEHPMTIRWEEEESDMPGEGSKGENDRGDLIFLG 209
Query: 129 EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKK 188
++P+M++S C LY ++L L ECPYD+GGYFIINGSEKVLIAQE+ + N V VFKK
Sbjct: 210 KLPVMVKSQICHLYGEDDESLFVLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKK 269
Query: 189 RQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIII 248
+Y AE+ S E +R S++ + + ++ S + G + TLPY+R ++ + I
Sbjct: 270 PPGGSVSYQAEIRSALEKGSRLISSLQMKLHTKASNEKGRLANTVSVTLPYVREDVSLAI 329
Query: 249 LFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRG-ATVGV 303
+FRALG +DEDIL HICYD +DTQM+E LRP +EEAF IQ+++ +IGKRG +G
Sbjct: 330 VFRALGIVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQDREIALDFIGKRGNGNMGQ 389
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
R I+ AK++LQKEMLPH+ + CET+KA++ G+++++LL CALGRR DDRDH+G
Sbjct: 390 NRMNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVNKLLQCALGRRDTDDRDHFGK 449
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLAT 423
KRLDLAGPLL LFR + R++T D+ Y+++C+D K L IKA T+T LKYSLAT
Sbjct: 450 KRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCLDTNKHFTLALGIKANTLTNALKYSLAT 509
Query: 424 GNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMC 474
GNWG Q A + AGVSQVLN T+AST ++ KLAKPRQLHN+ WG++C
Sbjct: 510 GNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVC 569
Query: 475 PAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PAETPEGQACGLVKNL+LM Y+++G+ A PI++F+ G + E
Sbjct: 570 PAETPEGQACGLVKNLSLMCYVSVGTPADPIVDFMTARGMDVLE 613
>gi|346320677|gb|EGX90277.1| DNA-directed RNA polymerase II polypeptide [Cordyceps militaris
CM01]
Length = 1261
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 264/592 (44%), Positives = 371/592 (62%), Gaps = 80/592 (13%)
Query: 4 EEERLEEDEEEET--TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIE 61
E+E E+ EE++ T E+ W VIS++FE KGLV QQ SFDEF Q T+Q++V E + I
Sbjct: 5 EDEYDYENYEEDSGITPEDCWTVISSFFESKGLVSQQTASFDEFTQTTIQDLVSEYSKIS 64
Query: 62 IRPESQHNPGQ-----------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSA 110
+ Q NP + +F I +S+P ++E+DG +L R RNLTY+A
Sbjct: 65 L---DQPNPPSTDERKISVRRYEIEFGSIMVSRPSISETDGTVTSLLPYECRDRNLTYAA 121
Query: 111 PLYVDVTKRV---------------------IKKGH-------DGEEV------------ 130
P+Y+ +TK+V K G + E+V
Sbjct: 122 PVYIKITKKVQAAVETEIPLHELDDAQHTEYAKSGELPTRLAWESEDVSEPENANKPDAW 181
Query: 131 ---------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTN 181
P+M++S C L + + L + ECPYD+GGYF+INGSEKVLIAQE+ + N
Sbjct: 182 KDMVFVGKMPVMVKSKVCHLSREHDENLFLVNECPYDQGGYFVINGSEKVLIAQERSAAN 241
Query: 182 HVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIR 241
V VFKK QP+ Y Y AE+ S E +R S++ + + + + G GQ IH TLP+++
Sbjct: 242 IVQVFKKAQPSPYTYTAEIRSALEKGSRLISSMMLKLYGKGESARGGFGQTIHTTLPFVK 301
Query: 242 TEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKR 297
+++P+ I+FRALG +DEDIL HICYD +D+QM+E+LRP +EEAF +Q+++ +IGKR
Sbjct: 302 SDLPVAIVFRALGVVSDEDILNHICYDRKDSQMLEMLRPCIEEAFCVQDREVALDFIGKR 361
Query: 298 GA--TVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
G G+ R+K I+ A++ILQKE LPH+ ET+KA++ G+++H+LL CALGRR
Sbjct: 362 GNRDQAGLGRDKRIRVARDILQKETLPHISQEAGSETRKAFFIGYMVHKLLQCALGRREP 421
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITG 415
DDRDH+G KRLDLAGPLL LFR + R++ ++ +Y+++CV+ + NL IK T++
Sbjct: 422 DDRDHFGKKRLDLAGPLLAKLFRGIMRRMHSELANYLRRCVEGNRHFNLAVGIKPGTLSN 481
Query: 416 GLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLH 466
GLKYSLATGNWG Q AA + AGVSQVLN T+AST ++ KLAKPRQLH
Sbjct: 482 GLKYSLATGNWGDQKKAANSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLH 541
Query: 467 NSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
N+ WG++CPAETPEGQACGLVKNL+LM Y+++GS A P+++F+ G E E
Sbjct: 542 NTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIDFMINRGMEVIE 593
>gi|169616566|ref|XP_001801698.1| hypothetical protein SNOG_11456 [Phaeosphaeria nodorum SN15]
gi|160703211|gb|EAT81164.2| hypothetical protein SNOG_11456 [Phaeosphaeria nodorum SN15]
Length = 1252
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 267/571 (46%), Positives = 355/571 (62%), Gaps = 79/571 (13%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E T E+ WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+ + + + ++P + S
Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78
Query: 75 D----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR----- 119
D F +YL++P TE DG T LF ARLRNLTYS + D++ R
Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138
Query: 120 ---VIKKGHDGE--------------------------------EVPIMLRSSYCTLYQN 144
V+ +G D + ++P+MLRS C L
Sbjct: 139 ETQVVVEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198
Query: 145 SQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMA 204
S +AL ECPYD+GGYF+INGSEKVLIAQE+ + N V VF+K+Q N + AE+ S
Sbjct: 199 SDEALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGN-VPWTAEIRSAV 257
Query: 205 ESQNRPPSTIFVPMLSRTSAKGG----SSGQYIHATLPYIRTEIPIIILFRALGFTADED 260
E R S+ + + G + G + +A LPYI+ E+P+ I+FRALG +DE+
Sbjct: 258 EKGTRLISSFNIKWADTSLGNPGQGKRAPGPFAYAMLPYIKQEVPMAIVFRALGIVSDEE 317
Query: 261 ILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEIL 316
IL HI YD DTQM+ELL+PS+EE IQ+++ +I KRGA G TR++ +K+A++I+
Sbjct: 318 ILSHIVYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIM 376
Query: 317 QKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 376
QK+ K +FG++IHRLL C LGRR EDDRDH+G KRLDLAGPL+ L
Sbjct: 377 QKDKT----------LAKPTFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANL 426
Query: 377 FRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTR 435
FR LF KLT DV Y+Q+CV++ D N+Q A+KA IT GLKYSLATGNWG Q AA +
Sbjct: 427 FRILFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAK 486
Query: 436 AGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLV 487
AGVSQVLN TYAST ++ KLAKPRQLHNS WG++CPAETPEGQACGLV
Sbjct: 487 AGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLV 546
Query: 488 KNLALMVYITIGSAAYPILEFLEEWGTENFE 518
KNL+LM Y+++GS A PI++F+ + + E
Sbjct: 547 KNLSLMCYVSVGSDATPIIDFMSQRNMQLLE 577
>gi|209879223|ref|XP_002141052.1| RNA polymerase beta subunit [Cryptosporidium muris RN66]
gi|209556658|gb|EEA06703.1| RNA polymerase beta subunit, putative [Cryptosporidium muris RN66]
Length = 1184
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 261/544 (47%), Positives = 357/544 (65%), Gaps = 45/544 (8%)
Query: 12 EEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPG 71
+++E QE++WA+I YF ++GLV QQL+SF++F +QEIVDE I I P+ Q+ P
Sbjct: 6 KDDEVQQEDSWALIGTYFRDRGLVSQQLESFNDFIMYKLQEIVDEHPPIVIIPQPQYRPD 65
Query: 72 QQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKK 123
+Q D F ++ LS+P + E +G L+ ARLR+LTY++P++VD +++ +
Sbjct: 66 EQIDTSIQYVLKFGQLSLSRPSVEEREGVARGLWPSEARLRSLTYASPVFVDAEQKIYRM 125
Query: 124 GHDGEE---------------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGS 168
DG + +PIMLRS YC + S++ L GEC YD+GGYFIING
Sbjct: 126 HEDGTQTLLHETTYSRLPLAKIPIMLRSEYCWTHNISERELQSAGECIYDQGGYFIINGM 185
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGS 228
EKVLI QE+M+ N VY+F+K+QP+KY ++AEV S E + S V + +GGS
Sbjct: 186 EKVLIGQERMANNFVYLFQKKQPSKYTWIAEVRSNREGM-QATSGFSVKL------RGGS 238
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
GQ + ATLPYIRT+IPI ILFRALG +D+DIL YDF D+QM+ +LRPSLEE F
Sbjct: 239 QGQVV-ATLPYIRTDIPIAILFRALGVLSDKDILLRCVYDFSDSQMLAILRPSLEETFEF 297
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
+Q+ +IGKRG TVG REK I+YA+E+L++E+LPHVG CE +KAY+ G+++HR
Sbjct: 298 SSQEVCLDFIGKRGPTVGAIREKRIQYARELLEREVLPHVGVTIGCEFRKAYFIGYMVHR 357
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
L + ALGR EDDRDH+G KRLDLAGPL+ F FRK+ D+R +Q+ +DNGK+ ++
Sbjct: 358 LCMGALGRVPEDDRDHFGKKRLDLAGPLVAASFGQSFRKMMKDMRRLLQRNIDNGKEFDV 417
Query: 405 QFAIK-AKTITGGLKYSLATGNWGQG-NAAGTRAGVSQVLNCLTYASTFTYYLSWK---- 458
I+ A IT L+Y ATGNWG+ + R GV+QVL+ LT+AS +Y
Sbjct: 418 AGVIRSASYITQTLQYQFATGNWGKDRDGKIVRTGVAQVLSRLTFASALSYLRRLNTPLG 477
Query: 459 ----LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
LAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM I++G + I FL+EWG
Sbjct: 478 REGTLAKPRQLHNTHWGMICPAETPEGHAVGLVKNLALMCEISVGYRPFAIRTFLDEWGM 537
Query: 515 ENFE 518
++ +
Sbjct: 538 DSID 541
>gi|367041247|ref|XP_003651004.1| hypothetical protein THITE_2110960 [Thielavia terrestris NRRL 8126]
gi|346998265|gb|AEO64668.1| hypothetical protein THITE_2110960 [Thielavia terrestris NRRL 8126]
Length = 1282
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 270/582 (46%), Positives = 357/582 (61%), Gaps = 79/582 (13%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ 72
E+ T E+ W VIS+YF+ KGLV QQ+DSFDEF T+Q +VDE AD+ + NPG
Sbjct: 39 EDSITPEDCWEVISSYFDMKGLVSQQIDSFDEFTTTTIQSLVDEYADLTL---DHPNPGD 95
Query: 73 QS-----------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV- 120
S F + +SKP +TE+ GET L R RNLTYSAP+Y V+KR
Sbjct: 96 DSGRDIAMRRYDIHFGNVMISKPTLTETTGETTVLLPYECRDRNLTYSAPMYCRVSKRAR 155
Query: 121 ------------------------------------------IKKGHDGEE--------V 130
I KG D E+ +
Sbjct: 156 VAVNEEVRLEDMDDDQRAYMAQTGEVPKTIRWEEEDTGPREGIAKGDDDEQGDLIFLGKL 215
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
P+M++S C L+ ++L +L ECPYD+GGYFIINGSEKVLIAQE+ + N V VFKK
Sbjct: 216 PVMVKSQVCHLHGEDDESLFQLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPP 275
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILF 250
+Y AE+ S E +R S++ + + ++ S G + TLPY+R ++ + I+F
Sbjct: 276 GGSVSYQAEIRSALEKGSRLISSLQMKLHTKASPDKGRQANTVSVTLPYVREDVSLAIVF 335
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRG-ATVGVTR 305
RALG +DEDIL HICYD DTQM+E LRP +EEAF IQ+++ +IGKRG G R
Sbjct: 336 RALGIVSDEDILNHICYDRSDTQMLEALRPCIEEAFCIQDREIALDFIGKRGNGNAGQNR 395
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
I+ AK++LQKEMLPH+ + CET+KA++ G+++H+LL CALGRR DDRDH+G KR
Sbjct: 396 SNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHKLLQCALGRRDTDDRDHFGKKR 455
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGN 425
LDLAGPLL LFR + R++T D+ SY+++C+D K+ +L IK T+T GLKYSLATGN
Sbjct: 456 LDLAGPLLAKLFRGIIRRMTQDLMSYMKRCIDTNKNFSLALGIKHSTLTNGLKYSLATGN 515
Query: 426 WG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPA 476
WG Q A + AGVSQVLN T+AST ++ KLAKPRQLHN+ WG++CPA
Sbjct: 516 WGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPA 575
Query: 477 ETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
ETPEGQACGLVKNL+LM Y+++G+ A PI+EF+ E E
Sbjct: 576 ETPEGQACGLVKNLSLMCYVSVGTPAEPIVEFMIARNMEVLE 617
>gi|389626335|ref|XP_003710821.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
70-15]
gi|351650350|gb|EHA58209.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
70-15]
gi|440465319|gb|ELQ34645.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
Y34]
gi|440478473|gb|ELQ59304.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
P131]
Length = 1276
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 268/591 (45%), Positives = 361/591 (61%), Gaps = 86/591 (14%)
Query: 9 EEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH 68
+ + ++E T E+ W VIS+YF+EKGLV QQ+DS++EF +T+Q IVDE + + +
Sbjct: 19 DAENDDEITAEDCWNVISSYFDEKGLVSQQIDSYNEFTTSTIQGIVDEYSVLTL-----D 73
Query: 69 NPGQQSDF--------------AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYV 114
NP F I +++P + E+DG+ +TL R RNLTYS PLYV
Sbjct: 74 NPNPPDTFEGKPIRLRRYEIMLGNILVTQPTVKETDGKVSTLVPYECRDRNLTYSCPLYV 133
Query: 115 DVTKRV------------------------------------IKKGHDGEE--------- 129
+TK+V K H+ +E
Sbjct: 134 KLTKKVNVAVEEDIPLHELNDEQREEMQRTNEHPTTIRWELDRDKSHNPDEKISGEKMAD 193
Query: 130 ------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHV 183
+P+M++S C L + L L ECPYD+GGYFIINGSEKVLIAQE+ + N V
Sbjct: 194 MIYIGKIPVMVKSRICYLRSQPESELFLLNECPYDQGGYFIINGSEKVLIAQERSAANIV 253
Query: 184 YVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTE 243
VFKK QPNKY Y AE+ S E +R ST+ + + S+ + GS GQ IH LPY +
Sbjct: 254 QVFKKAQPNKYLYQAEIRSALEKGSRLVSTLTMKLTSKGDSTRGSFGQTIHLNLPYTSGD 313
Query: 244 IPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGA 299
+PI I+FRALG +DEDIL HI D DTQM+E+LRPS+EEAF IQ+++ +I KR
Sbjct: 314 LPIAIVFRALGVVSDEDILNHIVLDKNDTQMLEMLRPSIEEAFCIQDREVALDFIAKRVG 373
Query: 300 TVG---VTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAED 356
G +R +K A++ILQK+ LPH+ + CET+KA++ G+++H++L CALGRR D
Sbjct: 374 KDGGHSNSRHLRLKVARDILQKDTLPHISQAEGCETRKAFFLGYMVHKILQCALGRRDVD 433
Query: 357 DRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGG 416
DRDH+G KRLDLAGPLL LFR + RKLT D+ +++C+D G+D +L ++K T+T G
Sbjct: 434 DRDHFGKKRLDLAGPLLAKLFRGIIRKLTNDMMGGLRRCIDAGRDFDLTASLKPNTLTNG 493
Query: 417 LKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHN 467
LKYSLATGNWG Q AA + AGVSQVLN T+AST ++ KLAKPRQLHN
Sbjct: 494 LKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHN 553
Query: 468 SQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
+ WG++CPAETPEGQACGLVKNL+LM +++G+ A PI +FL G + E
Sbjct: 554 THWGLVCPAETPEGQACGLVKNLSLMCMVSVGTPAEPIYDFLVARGMDVLE 604
>gi|296412295|ref|XP_002835860.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629656|emb|CAZ80017.1| unnamed protein product [Tuber melanosporum]
Length = 620
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 258/508 (50%), Positives = 346/508 (68%), Gaps = 59/508 (11%)
Query: 50 MQEIVDESADIEIRPESQHNPGQQSD-----------FAEIYLSKPMMTESDGETATLFL 98
M E++DE + + + Q+ P QSD F YLS+P MTE DG T +
Sbjct: 1 MVEMIDEDSLLTL---DQNTP--QSDDGIVLRRYEIMFGPCYLSRPTMTEGDGSTQPMLP 55
Query: 99 KAARLRNLTYSAPLYVDVTKRVIKKGH---DGEE------------VPIMLRSSYCTLYQ 143
+ ARLRNLTYSAP+Y ++ K+V+ + D EE +P+ML+S
Sbjct: 56 QEARLRNLTYSAPMYCELKKKVMARVRYEWDIEEEDEGATKVFIGKMPVMLKS------- 108
Query: 144 NSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSM 203
L ECPYD+GGYF+INGSEKVLIAQE+ + N V VFKK P+ YVAE+ S
Sbjct: 109 -------HLNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKALPSPTPYVAEIRSA 161
Query: 204 AESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILE 263
E +R S++ + + S+ A+GG + I +TLPYI+++IPI+I+FRALG +DEDIL
Sbjct: 162 VEKGSRLISSMQIKLFSKGEARGGYNAT-IKSTLPYIKSDIPIVIVFRALGVVSDEDILN 220
Query: 264 HICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKE 319
H+CYD DTQM+E+++P +EEAF IQ+++ +IGKRG++ G+ +EK I+YA++I+QKE
Sbjct: 221 HVCYDRNDTQMLEMMKPCIEEAFVIQDREVALDFIGKRGSSQGINKEKRIRYARDIMQKE 280
Query: 320 MLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRT 379
+LPH+ + ET+KA++ G+++HR+L CAL RR DDRDH+G KRLDLAGPLL GLFRT
Sbjct: 281 LLPHISQEEGSETRKAFFLGYMVHRMLQCALERREVDDRDHFGKKRLDLAGPLLAGLFRT 340
Query: 380 LFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGV 438
L+RKLT DV Y++KCV+ KD NL A+K+ TIT GLKYSLATGNWG Q AA ++AGV
Sbjct: 341 LWRKLTKDVYKYLEKCVETSKDFNLTLAVKSNTITNGLKYSLATGNWGEQKKAASSKAGV 400
Query: 439 SQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 490
SQVLN T+AST ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 401 SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 460
Query: 491 ALMVYITIGSAAYPILEFLEEWGTENFE 518
+LM YITIG+ YP+++FL E E
Sbjct: 461 SLMSYITIGTPGYPLVDFLSSNDMELLE 488
>gi|400592641|gb|EJP60759.1| DNA-dependent RNA polymerase II beta subunit [Beauveria bassiana
ARSEF 2860]
Length = 1261
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 256/577 (44%), Positives = 358/577 (62%), Gaps = 78/577 (13%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD- 75
T E+ W VIS++FE KGLV QQ SFDEF Q+T+Q++V E + I + Q NP D
Sbjct: 21 TPEDCWTVISSFFESKGLVSQQTASFDEFTQSTIQDLVSEYSKISL---DQPNPPSNDDR 77
Query: 76 ----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK--- 122
F I +S+P ++E+DG +L R RNLTY+AP+Y+ +TK+V
Sbjct: 78 KISVRRYEIEFGSIMVSRPSISETDGTVTSLLPYECRDRNLTYAAPVYIKITKKVQAAVE 137
Query: 123 ----------------------------KGHDGEE------------------VPIMLRS 136
+ D E +P+M++S
Sbjct: 138 TEIPLHELDDAQQTEYAKTGELPTRLAWRSEDAPEPENSNKPDAWKDMVFVGKMPVMVKS 197
Query: 137 SYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAY 196
C L + + L + ECPYD+GGYF+INGSEKVLIAQE+ + N V VFKK QP+ Y Y
Sbjct: 198 KVCHLSREHDENLFLVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPYTY 257
Query: 197 VAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFT 256
AE+ S E +R S++ + + + + G GQ IH TLP+++ ++P+ I+FRALG
Sbjct: 258 TAEIRSALEKGSRLISSMMLKLYGKGESARGGFGQTIHTTLPFVKADLPVAIVFRALGVV 317
Query: 257 ADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGA--TVGVTREKMIK 310
+DEDIL HICYD +D+QM+E+LRP +EEAF +Q+++ +IGKRG G+ R+K I+
Sbjct: 318 SDEDILNHICYDRKDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQAGLGRDKRIR 377
Query: 311 YAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 370
A++ILQKE LPH+ ET+KA++ G+++H+LL CALGRR DDRDH+G KRLDLAG
Sbjct: 378 VARDILQKETLPHISQEAGSETRKAFFIGYMVHKLLQCALGRREPDDRDHFGKKRLDLAG 437
Query: 371 PLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QG 429
PLL LFR + R++ ++ +Y+++CV+ + NL +K T++ GLKYSLATGNWG Q
Sbjct: 438 PLLAKLFRGIMRRMHSELANYLRRCVEGNRHFNLAVGVKPGTLSNGLKYSLATGNWGDQK 497
Query: 430 NAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEG 481
A + AGVSQVLN T+AST ++ KLAKPRQLHN+ WG++CPAETPEG
Sbjct: 498 KAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEG 557
Query: 482 QACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
QACGLVKNL+LM Y+++GS A P+++F+ G E E
Sbjct: 558 QACGLVKNLSLMCYVSVGSPAEPLIDFMINRGMEVIE 594
>gi|449302981|gb|EMC98989.1| hypothetical protein BAUCODRAFT_65631 [Baudoinia compniacensis UAMH
10762]
Length = 1254
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 270/581 (46%), Positives = 367/581 (63%), Gaps = 76/581 (13%)
Query: 9 EEDEEEET-TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI-RPES 66
EED + T E+ W VI ++FE KGLV QQLDSFDEF TMQEI+ E+ I + R S
Sbjct: 6 EEDYDSSVITSEDCWTVIQSFFESKGLVSQQLDSFDEFAATTMQEIISETETIAVDRNLS 65
Query: 67 QHNPGQ---------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT 117
+ G Q +F + +S+ MTE DG T LF ARLRNLTY++P+Y+++
Sbjct: 66 PEDDGHGATIVKKRWQIEFGKATISQAAMTEGDGVTRALFPHEARLRNLTYASPIYLEMK 125
Query: 118 KRVI--------------------KKGHDGEE---------------------------V 130
KRV+ + DG+E +
Sbjct: 126 KRVMIAKEKPAGSYWDEEQERWEAPEEWDGQEYETFWQRDPEDEASPDADTATKVFIGKL 185
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
P+ML+S CTL S++ L ECP+D+GGYFIINGSEKVLIAQE+ + N V VFKKR
Sbjct: 186 PVMLKSKICTLRNRSEQELYAFQECPFDQGGYFIINGSEKVLIAQERSAANIVQVFKKRG 245
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILF 250
+ VAE+ S E +R ST+ V + RTS G + G+ + ATLPYI+++IP++ +F
Sbjct: 246 -SPTPVVAEIRSAIEKGSRLISTMMVKLYERTS--GTNLGKTVKATLPYIKSDIPLVAVF 302
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTRE 306
RALG +DEDIL HIC DTQM+E+L+P LEEA IQ ++ +IG+RG G TRE
Sbjct: 303 RALGIVSDEDILLHICKR-DDTQMLEMLKPCLEEAAAIQEREQALDFIGRRGNFAG-TRE 360
Query: 307 KMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRL 366
K IK+A++++QKE LPH+ + ET+KA++ G++++RLL LGR EDDRDH+G KRL
Sbjct: 361 KRIKFARDVMQKEFLPHISQEEGSETRKAFFLGYMVNRLLQVQLGRVEEDDRDHFGKKRL 420
Query: 367 DLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNW 426
DLAGPL+ +FR F +L D+R+Y+ +CV+ G++ N+ A+K+ IT GL+YSLATGNW
Sbjct: 421 DLAGPLMAQVFRLKFSQLVKDIRNYLHRCVEQGREFNINLAVKSNIITSGLRYSLATGNW 480
Query: 427 G-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAE 477
G Q AA ++AGVSQVLN TYAST ++ K+AKPRQLHN+ WG++CPAE
Sbjct: 481 GDQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAE 540
Query: 478 TPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
TPEGQACGLVKNLALM Y+++G+ P++E++ G E E
Sbjct: 541 TPEGQACGLVKNLALMCYVSVGTPGTPLIEYMRHRGMELLE 581
>gi|320582153|gb|EFW96371.1| DNA-directed RNA polymerase II [Ogataea parapolymorpha DL-1]
Length = 1275
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 280/601 (46%), Positives = 370/601 (61%), Gaps = 87/601 (14%)
Query: 1 MMMEEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
M E + E E T E+ W VIS++FEEKGLV QQLDSF+EF ++++QE+V E +
Sbjct: 1 MSFNESMYDVPEYEMITTEDCWTVISSFFEEKGLVSQQLDSFEEFIESSIQELVLEDKKL 60
Query: 61 EIRPESQH-------NPGQQSDFAEIYLS------------------------------- 82
+ +QH N + F +I+LS
Sbjct: 61 ILDQPAQHITEDDDVNRRYEITFGDIFLSKPSQTEADGTTSTLLPQEARLRNLTYSAPLY 120
Query: 83 ---KPMMTES--DGETATLFL------KAARLRN-------LTYSAPLYVDVTKRVIKKG 124
K M+ ES D + T + + R RN + P + D + +I++
Sbjct: 121 VEMKKMVKESIDDDDVVTTQVVWYREGEITRYRNGEIEQDEMVIMPPNFDDDSDDIIEER 180
Query: 125 H------DGEE--------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEK 170
H G E VPIML+S +C+LY S+ L E+ ECP+D GGYFIINGSEK
Sbjct: 181 HGIKVHRSGAESQTIFIGKVPIMLKSKFCSLYGLSEDELYEIRECPFDMGGYFIINGSEK 240
Query: 171 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSA---KGG 227
VLIAQE+ + N V VFKK P+ +++AE+ S E +R S+I V L+R A K G
Sbjct: 241 VLIAQERSAANIVQVFKKSPPSPVSHIAELRSALEKGSRLISSIQVK-LARGGASNFKSG 299
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
G+ I ATLPYI+ +IPI+I+FRALG D DIL+HICYD D QM+E+L+P +EE F
Sbjct: 300 GVGRSIKATLPYIKADIPIVIVFRALGVIEDGDILQHICYDENDWQMLEMLKPCIEEGFL 359
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ+Q+ YIG+RG ++G+ +E+ I+YAK+ILQ+E LPH+ ET KAY+ G+I++
Sbjct: 360 IQSQEVALDYIGRRGNSIGIKKERRIQYAKDILQREFLPHISQDSGYETNKAYFLGYIVN 419
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKL+ D+ Y+Q+C++ G D N
Sbjct: 420 RLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYRYMQRCIERGDDFN 479
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
+ A+K+ TIT GLKYSLATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 480 IVSAVKSNTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIG 539
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM ++GSA+ PI LEEWG
Sbjct: 540 RDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMACASVGSASEPITYLLEEWGL 599
Query: 515 E 515
E
Sbjct: 600 E 600
>gi|428180722|gb|EKX49588.1| hypothetical protein GUITHDRAFT_159421 [Guillardia theta CCMP2712]
Length = 1185
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 258/551 (46%), Positives = 355/551 (64%), Gaps = 48/551 (8%)
Query: 12 EEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIV-DESADIEIRPESQHNP 70
+++E Q + W +I YF+E GLV+QQ S++EF +QE++ D IE+ Q+ P
Sbjct: 6 DDDEIRQPDTWEIIRKYFDENGLVQQQRASYNEFILQNVQEVIEDYKGQIEVIATPQYKP 65
Query: 71 GQ--------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
G Q DF + +++P +TE +G L ARLR LTYS L+VD+T R K
Sbjct: 66 GTKQDYKQKIQVDFGRVRIAQPNITEVEGRKERLLPYMARLRKLTYSCQLFVDITLRKYK 125
Query: 123 KGHDGEE---------------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIING 167
DG E VP+MLRS C L+ K + +L ECP D+GGYF+ING
Sbjct: 126 VASDGSEQLDNIDEHERVPLGKVPVMLRSEVCRLFGKYNKDIMDLKECPQDQGGYFVING 185
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-TSAKG 226
SEKVL+AQE+ + N V+VFKK K+AYVAEV S E N+PPST+++ + +R +A+
Sbjct: 186 SEKVLLAQERRANNLVFVFKK-TLGKFAYVAEVGSQVEKGNKPPSTLYMKLWNRENNARF 244
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
G+S + TLPY+R EIPI+I+FRALG +D +ILEHI Y+ +D QMME LRPSL+EA
Sbjct: 245 GAS---VVLTLPYVRKEIPIVIVFRALGIESDREILEHIVYNLKDVQMMEALRPSLDEAA 301
Query: 287 FIQNQQ-------YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFG 339
++ YIG+R + +RE I++A +IL +E+LPH+G + TKK Y+ G
Sbjct: 302 QGKDLSTREAALDYIGRRALGMTTSRENRIQHAHDILIRELLPHIGITEESLTKKQYFLG 361
Query: 340 HIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNG 399
++ +RLL C+LGRR DDRDHYGNKR+D+AGPLL GLF+ F++L + R +Q +DNG
Sbjct: 362 YVCNRLLACSLGRRQPDDRDHYGNKRVDMAGPLLAGLFKGCFKRLVKEFRKSLQDSLDNG 421
Query: 400 KDVNLQFAIKAKTITGGLKYSLATGNWGQGNAA----GTRAGVSQVLNCLTYASTFTYYL 455
K+VN+ A K IT G+KY +ATGNWG G AA TR GVSQVL+ LT+A+ ++
Sbjct: 422 KEVNMNTAFKQDFITKGIKYCMATGNWGVGKAAVAGQATRTGVSQVLSRLTFAAALSHLR 481
Query: 456 --------SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILE 507
K+A+PRQLHN+QWG++CPAETPEGQACGLVKNL+LM Y+++G A+ I+E
Sbjct: 482 RANTPIGKEGKIAQPRQLHNTQWGVVCPAETPEGQACGLVKNLSLMTYVSVGGASQVIIE 541
Query: 508 FLEEWGTENFE 518
L+ G E E
Sbjct: 542 LLQAGGMEELE 552
>gi|402077539|gb|EJT72888.1| hypothetical protein GGTG_09739 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 1278
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 260/586 (44%), Positives = 362/586 (61%), Gaps = 76/586 (12%)
Query: 9 EEDE--EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPES 66
EED+ E T E+ W VIS+YF+EKGLV QQ+DS++EF T+Q I+DE + + ++
Sbjct: 20 EEDDFDPEAITPEDCWTVISSYFDEKGLVSQQIDSYNEFTTTTIQSIIDEYHTLTLDQQN 79
Query: 67 QHNPGQQS----------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV 116
+ G F I +++P + E+DG+ TL R RNLTY+ PL+V +
Sbjct: 80 PQDSGASGRPLRMRRYTLTFGHILVTQPTIKETDGQANTLVPYECRDRNLTYACPLWVKL 139
Query: 117 TKRV------------------------------------------IKKGHDGEE----- 129
T++V I+K + +
Sbjct: 140 TRKVEAAVEVDIPEDKLTEEQKEEALATNEHPTTVVWVPEPVEEHSIEKNENMRDMVFIG 199
Query: 130 -VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKK 188
+PIML+S C L + L L ECPYD+GGYFIINGSEKVLIAQE+ + N V VFKK
Sbjct: 200 KIPIMLKSRICYLRSQPESELFLLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKK 259
Query: 189 RQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIII 248
QP+KY Y AE+ S E +R S++ + + S+ + G+ GQ +H TLPY+ E+P+ I
Sbjct: 260 AQPHKYLYQAEIRSALEKGSRLISSLVMSLTSKGDSSRGAFGQTLHVTLPYVNGELPLAI 319
Query: 249 LFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGV- 303
+FRALG +DEDIL HI D D QM+E+LRPS+EEAF IQ+++ +IGKR G
Sbjct: 320 VFRALGVVSDEDILNHIVLDKGDVQMLEMLRPSIEEAFCIQDREVALDFIGKRVGRDGQH 379
Query: 304 --TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHY 361
R + ++ A++ILQKE LPHV + ET+KA++ G+++H++L CALGRR DDRDH+
Sbjct: 380 ANNRHQRLRMARDILQKETLPHVSQEEGQETRKAFFLGYMVHKILQCALGRRDVDDRDHF 439
Query: 362 GNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSL 421
G KRLDLAGPLL LFR L R+++ D+ +++++C+D+ ++ +L A++ T++ GLKYSL
Sbjct: 440 GKKRLDLAGPLLAKLFRNLVRRMSNDMMNHLKRCIDSSRNFDLTSALRPNTLSNGLKYSL 499
Query: 422 ATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGM 472
ATGNWG Q AA + AGVSQVLN T+AST ++ KLAKPRQLHN+ WG+
Sbjct: 500 ATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGL 559
Query: 473 MCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
+CPAETPEGQACGLVKNL+LM +++G+ A PI FL G E E
Sbjct: 560 VCPAETPEGQACGLVKNLSLMCMVSVGTPASPIEHFLVSRGMEVLE 605
>gi|429329468|gb|AFZ81227.1| DNA-directed RNA polymerase II subunit, putative [Babesia equi]
Length = 1219
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 265/548 (48%), Positives = 359/548 (65%), Gaps = 45/548 (8%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ 72
+E + E++W VI ++F GLV QQ++SF++F MQEI+DE IEI+P+ ++ P
Sbjct: 68 QEGFSDEDSWKVIGSFFSTHGLVHQQIESFNDFITYRMQEIIDEHPPIEIKPQPRYRPDD 127
Query: 73 QSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV-IKK 123
+ F ++ L+KP + E DG ++ + ARLRNLTY++ +YVD+ + +K
Sbjct: 128 DLESNVTYRLKFGQLSLNKPCVEEKDGVFKHIWPQEARLRNLTYASQIYVDIEQETYLKD 187
Query: 124 GHDGEE---------------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGS 168
G E +P+ML+S+YC S++ L ++GECPYD+GGYFI+NG
Sbjct: 188 ETTGAETLQDKTTYPRIPLGRMPMMLKSTYCWTKGLSEEDLADVGECPYDQGGYFIVNGG 247
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAE-SQNRPPSTIFVPMLSRTSAKGG 227
E+VLIAQE+M+ N +YVFKK+QP+KY++VAE+ S AE SQ P +I M S A G
Sbjct: 248 ERVLIAQERMANNFIYVFKKKQPSKYSFVAEIRSQAEFSQGITPFSIM--MKSSLGAPGS 305
Query: 228 ---SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEE 284
S GQ + AT+PY+R +IP+ ILFRALG AD DIL+ I YDF+D QM+ L+R +LEE
Sbjct: 306 RFKSHGQLV-ATIPYLRADIPVPILFRALGCVADRDILQRIVYDFEDKQMLNLMRATLEE 364
Query: 285 AFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGH 340
A Q+ +IGKRG TVG E I+YAK++L++ +LPHVGT E KK Y+ G+
Sbjct: 365 ASDYVTQETCLDFIGKRGPTVGAPLETRIQYAKDLLRQHLLPHVGTEPGSEGKKCYFLGY 424
Query: 341 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK 400
+IHRLLL LGR EDDR+H+G KRLDLAGPL+ F TLFRK+ D R +Q+ +D G+
Sbjct: 425 MIHRLLLSRLGRINEDDREHFGKKRLDLAGPLMASSFGTLFRKMAKDARRILQQQIDCGR 484
Query: 401 DVNLQFAIK-AKTITGGLKYSLATGNWGQGNAAG-TRAGVSQVLNCLTYASTFTYYLSW- 457
++ AI+ A TIT GL+Y L TGNWG+ R GVSQVLN LT+AS ++
Sbjct: 485 AFDVAGAIRSATTITQGLQYQLLTGNWGRDREGKIVRTGVSQVLNRLTFASYLSHLRRLN 544
Query: 458 -------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLE 510
K+AKPRQLHN+ WGM+CPAETPEGQA GLVKNLALM YI++GS A I EFL
Sbjct: 545 TPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCYISVGSVAATINEFLS 604
Query: 511 EWGTENFE 518
EWG ++ +
Sbjct: 605 EWGMDSLD 612
>gi|290973756|ref|XP_002669613.1| DNA-directed RNA polymerase II [Naegleria gruberi]
gi|284083163|gb|EFC36869.1| DNA-directed RNA polymerase II [Naegleria gruberi]
Length = 1233
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 276/559 (49%), Positives = 368/559 (65%), Gaps = 61/559 (10%)
Query: 13 EEETTQEEAWAVISAYFEEKG-LVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPG 71
+E QE+ W VI+A+F++KG LVRQQLDSF+ F Q T+QE+V+ +++I + + + G
Sbjct: 46 DELKVQEDVWPVITAFFDQKGGLVRQQLDSFNVFIQQTIQELVEGTSEIMLSSSASYKVG 105
Query: 72 QQSD-------------FAEIYLSKPMM---TESDGETATLFLKAARLRNLTYSAPLYVD 115
Q+ D F +IYLS+P + +E ++++ ARLRNLTYS+PLYVD
Sbjct: 106 QKRDQQQNQPQFKYNIKFGQIYLSRPTVDTKSEQIEAYSSVYPNDARLRNLTYSSPLYVD 165
Query: 116 VTKRVIK----------KGHDGEE-------------------VPIMLRSSYCTLYQNSQ 146
+ ++ I GEE +PIMLRS YC L +
Sbjct: 166 IHEKKITLRPGSTANIYTAQVGEEDTDDFIVQSKIHNQIPLGSIPIMLRSVYCML--SEV 223
Query: 147 KALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAES 206
+ +T++GECP+D GGYFIING EKV+IAQE+M+TNHVYVFKK +K++YVAE+ S E
Sbjct: 224 QDVTDVGECPFDSGGYFIINGGEKVIIAQERMATNHVYVFKKAM-SKFSYVAEIRSSQEG 282
Query: 207 QNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHIC 266
R PS F+ M + K G G IHAT+PYIR +IPI+ILFRAL AD++I++HI
Sbjct: 283 GYRAPSGFFIKMEPKQGNKKGGIGGLIHATIPYIRQDIPIVILFRALSCQADKEIIKHII 342
Query: 267 YDFQDTQMMELLRPSLEEAFFIQNQ----QYIGKRGATVGVTREKMIKYAKEILQKEMLP 322
Y+ D QMMELLRPSLEEA + + YIGKRG T+G ++EK + +A+EILQKEMLP
Sbjct: 343 YNLNDGQMMELLRPSLEEAVAVLSNTVALDYIGKRGNTLGASQEKRMNHAEEILQKEMLP 402
Query: 323 HVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFR 382
HVG GD +KAY+ G+++HRLLL ALGRR DDRDHYGNKRL+LAG LL GLF LF+
Sbjct: 403 HVGIGDTSYDRKAYFIGYMVHRLLLGALGRRPLDDRDHYGNKRLELAGGLLQGLFLQLFK 462
Query: 383 KLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVL 442
K+ ++ S ++K + ++++ A+ +TIT GL+YSLATGNWG + RAGV+QVL
Sbjct: 463 KVVKEMESTLKKSILKSSEIDVAPAVNKRTITKGLQYSLATGNWGVQGSRDIRAGVAQVL 522
Query: 443 NCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMV 494
N LTY ST ++ S K A PRQLHN+QWG++CPAETPEG ACGLVKNLALM
Sbjct: 523 NRLTYTSTLSHLRRLNTPIERSGKQAAPRQLHNTQWGVICPAETPEGGACGLVKNLALMS 582
Query: 495 YITIGSAAYPILEFLEEWG 513
YIT+G+ I + L+E G
Sbjct: 583 YITVGTDKTHISKMLDELG 601
>gi|399216338|emb|CCF73026.1| unnamed protein product [Babesia microti strain RI]
Length = 1202
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 259/550 (47%), Positives = 360/550 (65%), Gaps = 42/550 (7%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNP 70
++E T +++W VIS++F+ GLV QQ++SFD+F MQEIVDE IEIRP+ Q+ P
Sbjct: 33 EKEPSITDDDSWTVISSFFKTHGLVHQQIESFDDFVTYRMQEIVDEYPPIEIRPQPQYRP 92
Query: 71 GQQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV-I 121
+ + F ++ L++P + E +G T ++ + ARLRNLTYS+ +YVD+ + + I
Sbjct: 93 EDEIEVNVIYKLKFGQLSLNRPSVDEKEGVTKHIWPQEARLRNLTYSSQIYVDIDQEIYI 152
Query: 122 KKGHDGEE---------------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIIN 166
G+E +P+ML+S YC S+ L ++GECPYD+GGYFI+
Sbjct: 153 YDEAKGQETLQDRTSYPRISLGKIPMMLKSMYCWTRNVSEDDLADIGECPYDQGGYFIVG 212
Query: 167 GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAE-SQNRPPSTIFVPMLSRTSAK 225
G E+VLIAQE+M+ N +YVFKK+QP+K+++VAE+ S E SQ +I + T+
Sbjct: 213 GGERVLIAQERMANNFIYVFKKKQPSKFSWVAEIRSQMEYSQGTSAFSIKMKAKQATANV 272
Query: 226 GGS---SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSL 282
G+ S + ATLPYIRT+IP+ ILFRALG AD+DIL+ I YDF D QM+ L++P+L
Sbjct: 273 IGNRFRSYDQLVATLPYIRTDIPVAILFRALGCVADKDILQRIAYDFDDKQMLNLMKPTL 332
Query: 283 EEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYF 338
E+A Q +IGKRG TVG R+K I+YAK++L+KE+LPHVGT E+KK Y+
Sbjct: 333 EDALDFTTQDACLDFIGKRGPTVGAPRDKRIQYAKDLLRKEVLPHVGTELGVESKKCYFI 392
Query: 339 GHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN 398
G+++HRLLL LGR +DDRDH+G KRLD+AGPL+ F TLFRK+ D + +Q +D
Sbjct: 393 GYMVHRLLLAKLGRINQDDRDHFGKKRLDMAGPLMASSFGTLFRKMAKDAKRILQHQIDC 452
Query: 399 GKDVNLQFAIK-AKTITGGLKYSLATGNWGQG-NAAGTRAGVSQVLNCLTYASTFTYYLS 456
G+ ++ AI+ A IT GL+Y L TGNWG+ + R GVSQVLN LT+AS ++
Sbjct: 453 GRTFDVAGAIRSASQITQGLQYQLLTGNWGKDRDGKVVRTGVSQVLNRLTFASCLSHLRR 512
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
K+AKPRQLHN+ WGM+CPAETPEGQA GLVKNLALM I++G A+ I E
Sbjct: 513 LNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCSISVGGASSTICEL 572
Query: 509 LEEWGTENFE 518
L E G ++ +
Sbjct: 573 LTELGMDSLD 582
>gi|452843951|gb|EME45885.1| hypothetical protein DOTSEDRAFT_42537 [Dothistroma septosporum
NZE10]
Length = 1260
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 265/583 (45%), Positives = 370/583 (63%), Gaps = 70/583 (12%)
Query: 2 MMEEERLEEDEEEET--TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESAD 59
MM + EED+ + T E+ W VI ++F+ KGLV QQLDSFDEF TMQEIV E+A
Sbjct: 11 MMAQMEGEEDDTDMNMITAEDCWTVIHSFFDAKGLVSQQLDSFDEFASTTMQEIVSETAP 70
Query: 60 IEI------RPESQHNPGQQS----DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYS 109
I I E + P + ++ +S+ MT+ DG T LF +RLRNLTY+
Sbjct: 71 IVIDQNIASEDEGSNMPIIKKRIELHLQDVTISQAAMTDGDGVTRALFPHESRLRNLTYA 130
Query: 110 APLYVDVTKR------------VIKKGH-------DGE---------------------- 128
+P+++ +TK+ + + G+ DG+
Sbjct: 131 SPIFLSITKKQKLCRERSVGGYLDETGYWNDPPDFDGQTELHWEEDPDHPDETQGDIFIG 190
Query: 129 EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKK 188
++PIML+S C L S++ L ECP+D+GGYFIINGSEKVLIAQE+ + N V VFKK
Sbjct: 191 KLPIMLKSKICALRNRSEQELYAFQECPFDQGGYFIINGSEKVLIAQERSAANIVQVFKK 250
Query: 189 RQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIII 248
+ N VAE+ S E R S++ + L + SA + GQ I ++PYI+++IPI I
Sbjct: 251 KGTNT-PVVAEIRSAIEKGTRLISSMQLK-LYKQSANSNAHGQTIKVSVPYIKSDIPIAI 308
Query: 249 LFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVT 304
+FRALG +DEDIL HIC DT+M+E L+P LEEAF IQ++ +IG+RG G T
Sbjct: 309 VFRALGVVSDEDILNHICSK-SDTRMLEYLKPCLEEAFVIQDRDSALDHIGRRGQQQG-T 366
Query: 305 REKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNK 364
+E+ I+YA++I+QKE LPH+ + ETKKA++ G++++RLL CALGR EDDRDH+G K
Sbjct: 367 KERRIRYARDIMQKEFLPHISQEEGSETKKAFFLGYMVNRLLQCALGRTEEDDRDHFGKK 426
Query: 365 RLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATG 424
RLDLAGPL+ +FR F++L D+++Y+ +C++ G++ N+ AIK+ IT GL+Y LATG
Sbjct: 427 RLDLAGPLMAQVFRLKFQQLVKDMKTYLHRCIEGGREFNIALAIKSNIITSGLRYCLATG 486
Query: 425 NWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCP 475
NWG Q AA +AGVSQVLN TYAST ++ K+AKPRQLHN+ WG++CP
Sbjct: 487 NWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCP 546
Query: 476 AETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
AETPEGQACGLVKNL+LM Y+T+G+ A P+++F+ + G + E
Sbjct: 547 AETPEGQACGLVKNLSLMCYVTVGTPAEPLIDFMRQRGMDLLE 589
>gi|453086391|gb|EMF14433.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Mycosphaerella populorum SO2202]
Length = 1260
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 262/584 (44%), Positives = 364/584 (62%), Gaps = 73/584 (12%)
Query: 2 MMEEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIE 61
M EEE E E+ T E+ W VI ++F KGLV QQLDSFDEF TMQEIVDE+ I
Sbjct: 12 MAEEE--ENFEDNTITAEDCWTVIHSFFSTKGLVSQQLDSFDEFASTTMQEIVDETPAIV 69
Query: 62 IRPESQHNPGQQSD-----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSA 110
I + +++ + +S+ MTE DG T + ARLRNLTYS+
Sbjct: 70 IDQNVASDGDDETNMPIVKRRYIIELGMLTISQAAMTEGDGSTRQMHPHEARLRNLTYSS 129
Query: 111 PLYVDVTKRVIKK------GHDGEE----------------------------------- 129
P+++++ K+++ GH E+
Sbjct: 130 PMFINMRKKMMLARERSIGGHLSEDGTHWIDPVGWDGYTTETVWEDDPDNPMEAKDQVFI 189
Query: 130 --VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
+PIML+S C L S++ L ECP+D+GGYFIINGSEKVLIAQE+ + N V VFK
Sbjct: 190 GKLPIMLKSKICALRNRSEQELYAFQECPFDQGGYFIINGSEKVLIAQERSAANIVQVFK 249
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
K+ N VAE+ S E R S++ + + ++ SA+ SG+ I T+PY++ +IPI
Sbjct: 250 KKGTNT-PVVAELRSAIEKGTRLISSMGIRLYNQ-SAQSAVSGKTIRVTVPYLKVDIPIG 307
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGV 303
I+FRALG +DEDIL HI D DTQM+E+L+P LEEAF IQ++ YIG+RG G
Sbjct: 308 IVFRALGIVSDEDILNHIV-DKSDTQMLEMLKPCLEEAFVIQDKDVALDYIGRRGQQQG- 365
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
T++K I+YAKE++QKE LPH+ + ETKKA++ G++++R+L CALGR EDDRDH+G
Sbjct: 366 TKDKRIRYAKEVMQKEFLPHISQEEGSETKKAFFLGYMVNRMLQCALGRTDEDDRDHFGK 425
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLAT 423
KRLDLAGPL+ +FR F++L +++ Y+ +CV+ G++ N+ A+K IT GL+Y LAT
Sbjct: 426 KRLDLAGPLMAQVFRLKFQQLVKEMKQYLHRCVETGREFNITLAVKTNIITSGLRYCLAT 485
Query: 424 GNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMC 474
GNWG Q A+ ++AGVSQVLN TYAST ++ K+AKPRQLHN+ WG++C
Sbjct: 486 GNWGDQKKASSSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 545
Query: 475 PAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PAETPEGQACGLVKNL+LM Y+T+G+ P+++F+ + G + E
Sbjct: 546 PAETPEGQACGLVKNLSLMCYVTVGTPGTPLIDFMRQRGMDLLE 589
>gi|156084492|ref|XP_001609729.1| DNA-directed RNA polymerase, beta subunit family protein [Babesia
bovis]
gi|154796981|gb|EDO06161.1| DNA-directed RNA polymerase, beta subunit family protein [Babesia
bovis]
Length = 1207
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 252/552 (45%), Positives = 361/552 (65%), Gaps = 47/552 (8%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
++E + T E++W VI ++F GLV QQ++SF++F MQE +D+ IEI P+ Q++
Sbjct: 50 KNELDAFTDEDSWKVIGSFFNTHGLVHQQIESFNDFVTYRMQETIDQHPPIEITPQPQYH 109
Query: 70 PGQQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVI 121
P + + F ++ L+KP + E G ++ + ARLRNLTYS+ +YVD+ ++
Sbjct: 110 PEDERENNIVYKLKFGQLSLNKPCVEEMAGVLKHIWPQEARLRNLTYSSQIYVDIEQKTY 169
Query: 122 KKGHDGE----------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFII 165
+ + +P+ML+S+YC S+ L ++GECP+DEGGYFI+
Sbjct: 170 LRDENTNTETLQETITYPRIELGRIPMMLKSAYCWTKDISEDDLADVGECPFDEGGYFIV 229
Query: 166 NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAE-SQNRPPSTIFVPMLSRTSA 224
NG E+VLI QE+M+ N++Y+FKK+QP+KY+ VAE+ S E SQ P +I M+ TS
Sbjct: 230 NGGERVLIGQERMANNYIYIFKKKQPSKYSLVAEIRSQPEFSQGTTPFSI---MMKSTSG 286
Query: 225 KGG----SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRP 280
G S GQ + ++PY++++IPI ILFRALG AD DIL+ I YDF+D QM+ L+RP
Sbjct: 287 IAGNRFKSHGQLV-GSIPYLKSDIPIAILFRALGCVADRDILQRIVYDFEDKQMLTLMRP 345
Query: 281 SLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAY 336
SLEE Q+ +IGKRG TVG E ++YAK++L++ LPHVGT CE++K Y
Sbjct: 346 SLEETADYSTQEMCLDFIGKRGPTVGAPLETRVQYAKDLLRQHFLPHVGTEPGCESRKCY 405
Query: 337 YFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
+ G+++HRLLL LGR EDDRDH+G KRLDLAG L+ F TLFRK+ D + +Q+ +
Sbjct: 406 FLGYMVHRLLLSRLGRIPEDDRDHFGKKRLDLAGSLMASSFGTLFRKMVKDTKRILQQQI 465
Query: 397 DNGKDVNLQFAIKAKT-ITGGLKYSLATGNWGQG-NAAGTRAGVSQVLNCLTYASTFTYY 454
D+G++ ++ A+++ T IT GL+Y L TGNWG+ + R GVSQVLN LT+AS ++
Sbjct: 466 DSGREFDVAGAVRSATQITHGLQYQLLTGNWGRDRDGKVVRTGVSQVLNRLTFASYLSHL 525
Query: 455 LSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
K+AKPRQLHN+ WGM+CPAETPEGQA GLVKNLALM +I++G+AA I
Sbjct: 526 RRLNTPLGREGKIAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCFISVGTAASTIN 585
Query: 507 EFLEEWGTENFE 518
EFL EWG ++ +
Sbjct: 586 EFLCEWGMDSLD 597
>gi|452982910|gb|EME82668.1| hypothetical protein MYCFIDRAFT_136855 [Pseudocercospora fijiensis
CIRAD86]
Length = 1248
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 261/584 (44%), Positives = 368/584 (63%), Gaps = 80/584 (13%)
Query: 8 LEEDEEEETTQ----EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR 63
+ ED+ +E Q E+ W+VI ++F+ KGLV QQLDSFDEF TMQEIVDE+ I I
Sbjct: 1 MAEDDYDEGNQIITAEDCWSVIHSFFDSKGLVSQQLDSFDEFASTTMQEIVDETPAIVI- 59
Query: 64 PESQHNPGQQSD--------------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYS 109
Q+ D + +S+ MTE DG T ++ ARLRNLTYS
Sbjct: 60 --DQNVAADDDDGLNMPIVKRRYIIELGVLTISQAAMTEGDGSTRAMYPHEARLRNLTYS 117
Query: 110 APLYVDVTKRV------IKKGHDGE----------------------------------- 128
+P+++++TKR+ G GE
Sbjct: 118 SPMFLNLTKRMQLARERSAGGQMGENGVWIDPPNWDGVTVDTIWEEDPDNPPETKDQVFI 177
Query: 129 -EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
++PIML+S C L S++ L ECP+D+GGYFIINGSEKVLIAQE+ + N V VFK
Sbjct: 178 GKLPIMLKSKICALRNRSEQELYAQQECPFDQGGYFIINGSEKVLIAQERSAANIVQVFK 237
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
K+ VAE+ S E R S++ V ++++ +A ++G+ I ++PYI+ +IPI
Sbjct: 238 KKG-TPTPVVAELRSAIEKGTRLISSMQVKLVNQ-AAHSNATGKTIKVSVPYIKVDIPIG 295
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGV 303
I+FRALG +DEDIL HI D +DTQM+E+L+P LEEAF IQ++ +IGKRG GV
Sbjct: 296 IVFRALGIVSDEDILNHIV-DRKDTQMLEMLKPCLEEAFVIQDRDGALDFIGKRGNQQGV 354
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
+E+ I+YA+EI+QKE LPH+ + ET+KA++ G++++RLL CALGR +EDDRDH+G
Sbjct: 355 -KERRIRYAREIMQKEFLPHISQEEGSETRKAFFLGYMVNRLLQCALGRTSEDDRDHFGK 413
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLAT 423
KRLDLAGPL+ +FR F++L +++ Y+ +CV+ G++ N+ A+K IT GL+Y LAT
Sbjct: 414 KRLDLAGPLMAQVFRLKFQQLVKEMKQYLHRCVETGREFNITLAVKTNIITSGLRYCLAT 473
Query: 424 GNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMC 474
GNWG Q A+ ++AGVSQVLN TYAST ++ K+AKPRQLHN+ WG++C
Sbjct: 474 GNWGDQKKASQSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 533
Query: 475 PAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PAETPEGQACGLVKNL+LM Y+T+G+ +P+++F+ + G + E
Sbjct: 534 PAETPEGQACGLVKNLSLMCYVTVGTPGFPLIDFMRQRGMDLLE 577
>gi|402589898|gb|EJW83829.1| DNA-directed RNA polymerase, partial [Wuchereria bancrofti]
Length = 473
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 257/453 (56%), Positives = 310/453 (68%), Gaps = 27/453 (5%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E QE W VISAYF+EKGLVRQQLDSFDEF Q +Q IV++S +E++ E QH G
Sbjct: 22 EQWQEACWVVISAYFDEKGLVRQQLDSFDEFIQMNVQRIVEDSPPVELQSEVQHFSGDVE 81
Query: 75 D-------FAEIYLSKPMMTESDGETATLFLKAA--RLRNLTYSAPLYVDVTKRVIKKGH 125
+ F +IYLSKP E DG + A RLRNLTYS+PLY+D+TK + + G
Sbjct: 82 NPIKFALKFDQIYLSKPTHWEKDGAPTPMMPNEAFARLRNLTYSSPLYIDITKTMTRIGE 141
Query: 126 DGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQ 175
+ +E +PIMLRSSYC L S + L+EL ECP D GGYF+INGSEKVLIAQ
Sbjct: 142 EPKETKYEKVFVGKIPIMLRSSYCMLANMSDRDLSELNECPLDPGGYFVINGSEKVLIAQ 201
Query: 176 EKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS--AKGGSSGQYI 233
EKM+TN VYVF + KY Y E S E+ +RP ST++V ML R +K + G I
Sbjct: 202 EKMATNTVYVFSMKD-GKYTYKTECRSCLENSSRPTSTLWVNMLPRGGGGSKKSAMGPKI 260
Query: 234 HATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ- 292
A LPYI+ EIP++I+FRALGF +D DILEHI YDF+D +MME+++PSL+EAF IQ Q
Sbjct: 261 IAILPYIKQEIPVMIVFRALGFVSDHDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNV 320
Query: 293 ---YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCA 349
+IG RGA GVT+E+ IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRLLL A
Sbjct: 321 ALNFIGARGAKPGVTKEQRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLLAA 380
Query: 350 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIK 409
LGRR DDRDH GNKRLDLAGPLL LFR LFR L +VR QK ++ D L +K
Sbjct: 381 LGRRELDDRDHMGNKRLDLAGPLLAFLFRALFRNLLKEVRLTAQKYINKNGDFMLDLCVK 440
Query: 410 AKTITGGLKYSLATGNWG-QGNAAGTRAGVSQV 441
IT GL YSLATGNWG Q A +RAGVSQV
Sbjct: 441 TPLITRGLAYSLATGNWGDQKKAHQSRAGVSQV 473
>gi|221053005|ref|XP_002257877.1| DNA-directed RNA polymerase II second largest subunit [Plasmodium
knowlesi strain H]
gi|193807709|emb|CAQ38413.1| DNA-directed RNA polymerase II second largest subunit, putative
[Plasmodium knowlesi strain H]
Length = 1371
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 250/550 (45%), Positives = 359/550 (65%), Gaps = 41/550 (7%)
Query: 9 EEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH 68
+ DEEE T+E++W VI ++F GLV QQ++S+++F + MQEI+DE +EIRP++Q+
Sbjct: 65 DHDEEERITEEDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPALEIRPQAQY 124
Query: 69 --------NPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR- 119
N F ++ L +P E + L+ + ARLRNLTYS+ +Y+D+ +
Sbjct: 125 RSEGDEQKNVMYALKFGQLSLDRPFYDERNLTNKNLWPQEARLRNLTYSSAIYIDIEQST 184
Query: 120 -VIKKGHDGE--------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFI 164
V+ + + +P+ML+S +C + + ++GEC +D+GGYFI
Sbjct: 185 YVVDESSGSQILKDKFIYERINLGRIPLMLKSMFCWTKGLPESEIADMGECAFDQGGYFI 244
Query: 165 INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSA 224
+NG EKVL+AQE+M+ N +YVFKK+QP+K+ +VAE+ S E +++ S V M ++T +
Sbjct: 245 VNGGEKVLVAQERMAHNFIYVFKKKQPSKFGWVAEIRSQME-RSQATSAFSVKMKTKTGS 303
Query: 225 KGGS--SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSL 282
+G S +G + ATLPYIRTEI + ILFRALG T+D DIL+ I YDF D M+ LR +L
Sbjct: 304 RGSSVRTGGQLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKMMINTLRETL 363
Query: 283 EEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYF 338
EE Q +IGKRG TVG +REK I YAKE+L+KE+LPH+GTG E+KK+Y+
Sbjct: 364 EECIDYPTQDICLDFIGKRGPTVGASREKRILYAKELLRKEVLPHMGTGPGVESKKSYFI 423
Query: 339 GHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN 398
G++I+RLLL LGR EDDRDH+G KRLD+AGPL+ F T FRK+ DV+ +Q+ +DN
Sbjct: 424 GYMINRLLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFSTYFRKMAKDVKRVLQRQIDN 483
Query: 399 GKDVNLQFAIKA-KTITGGLKYSLATGNWGQG-NAAGTRAGVSQVLNCLTYASTFTYYLS 456
K ++ A+++ IT G++Y LATGNWG+ + R GV+QVLN LTY+S ++
Sbjct: 484 NKPFDVAGAVRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRR 543
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
K+AKPRQLHN+ WGM+CP ETPEGQ+ GLVKNL+LM I++G++ I EF
Sbjct: 544 LNTPLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIFEF 603
Query: 509 LEEWGTENFE 518
L EWG E+ +
Sbjct: 604 LLEWGLESLD 613
>gi|407925273|gb|EKG18288.1| DNA-directed RNA polymerase subunit 2 domain 6 [Macrophomina
phaseolina MS6]
Length = 1258
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 256/563 (45%), Positives = 361/563 (64%), Gaps = 59/563 (10%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR---PESQHN 69
E+ T E+ W VIS++FEEKGLV QQ+DS+DEF +NT+ IV+ I + P + +
Sbjct: 19 EDTITAEDCWTVISSFFEEKGLVAQQIDSYDEFVKNTLPNIVEHMGAITMDHTPPIDESD 78
Query: 70 PGQ------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT------ 117
P + +F E+ + +P +T+ G T +F ARLRNLTY+A + D++
Sbjct: 79 PDPIIKKRYEVNFGEVKMGRPSLTDG-GVTRDVFPHEARLRNLTYAAAMMSDMSTKTSVA 137
Query: 118 -KRVIKKGHDGEE--------------------------VPIMLRSSYCTLYQNSQKALT 150
+R I D +E +P+ML+S C L + + L
Sbjct: 138 RERPIAPSGDMDEDETTGATELVWEVDSQTDKEQVFFGRLPVMLKSYVCGLRNLTDEQLY 197
Query: 151 ELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRP 210
ECPYD+GGYF+INGSEKVLIAQE+ + N V VF+KRQ + ++AE+ S E +R
Sbjct: 198 AHSECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKRQ-SPTPWIAEIRSAVEKGSRL 256
Query: 211 PSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQ 270
S++ + + + G ++ATLPY++ ++PI I+FRALG +DEDI+ HIC+D
Sbjct: 257 LSSMTLKLYEKPQLWKEGQGCCLYATLPYVKADVPIPIVFRALGIVSDEDIISHICFDKN 316
Query: 271 DTQMMELLRPSLEEAFFIQNQ----QYIGKRGA--TVGVTREKMIKYAKEILQKEMLPHV 324
D ++ME +RPS+EE+ IQ++ +IG+RG+ + G T+ + +K A++I+QKE LPH+
Sbjct: 317 DNKLMEAIRPSIEESVLIQDRVSALDFIGRRGSNPSTGGTKRERVKLARDIIQKEFLPHI 376
Query: 325 GTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKL 384
+ ETKKA++ G++I+RLL C LGRR EDDRDH+G KRLDLAGPLL LFR+LF KL
Sbjct: 377 SQTEGSETKKAFFLGYMIYRLLQCHLGRRDEDDRDHFGKKRLDLAGPLLANLFRSLFLKL 436
Query: 385 TGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLN 443
T DV +Y++KCV+ G+ +LQ A+K TI+ GLKYSLATGNWG Q AA ++AGVSQVLN
Sbjct: 437 TRDVYNYLKKCVEAGRPFSLQSAVKQGTISNGLKYSLATGNWGDQKKAASSKAGVSQVLN 496
Query: 444 CLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY 495
TY+ST ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM +
Sbjct: 497 RYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCH 556
Query: 496 ITIGSAAYPILEFLEEWGTENFE 518
+T+GS PI +F+ + E E
Sbjct: 557 VTVGSDVTPIQDFMTQRNMELLE 579
>gi|402468837|gb|EJW03931.1| hypothetical protein EDEG_01777, partial [Edhazardia aedis USNM
41457]
Length = 736
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 250/561 (44%), Positives = 347/561 (61%), Gaps = 74/561 (13%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ-- 72
+ T ++ W ++S YF KGL+ QQLDSF+ F T+QEIVDE+ +I I+ ++H +
Sbjct: 5 QLTTDDTWQILSTYFNSKGLLSQQLDSFNSFVGTTLQEIVDENKEIRIKTSNEHLATEIF 64
Query: 73 QSDFAEIYLS-KPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGH------ 125
F +IY P + E+DG+ ++ RLR+LTY PLY+D++ +KKG
Sbjct: 65 NLTFNQIYAKIPPSIVETDGQVRSVTPSEVRLRDLTYMCPLYIDIS---VKKGRISAQRN 121
Query: 126 ----------DGE-------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGY 162
DG +PIM+RSS+C + ++ GECPYD GGY
Sbjct: 122 TPLFSSTIDDDGVLYDQHSYSKVPIGSIPIMVRSSHCATAKLDSGSVATYGECPYDYGGY 181
Query: 163 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRT 222
FI+NGSEKVLI+QE+MSTNHV+V+ K Y AE+ S E ++ +V +
Sbjct: 182 FIVNGSEKVLISQERMSTNHVHVYSKND----VYFAEIRSAQEKGSKMSKPFYVKKI--- 234
Query: 223 SAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQD----------- 271
G+ + LPYI+ +IP++ILFRALGF +D+DIL HI YD +
Sbjct: 235 -------GKILVCNLPYIKGDIPVVILFRALGFISDKDILSHILYDDKHLEGENVVIDDY 287
Query: 272 -TQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGT 326
T + +L +E++F IQ+++ YIGKRGA G R K I++A IL+KE LPH+GT
Sbjct: 288 TTDVHSILGACIEDSFAIQDKEMARDYIGKRGAPAGSPRAKRIQFATSILEKEFLPHIGT 347
Query: 327 GDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTG 386
DF E++KAY+ G++I+RLLL +LG+R DDRDHYG KRLD+ G LL GLFRTLFRKL
Sbjct: 348 TDFLESRKAYFLGYMINRLLLVSLGKREIDDRDHYGKKRLDMCGSLLSGLFRTLFRKLVN 407
Query: 387 DVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCL 445
+ + ++QKC++NG+D N+ +K +T G +Y+LATGNWG Q ++AGV+QVLN
Sbjct: 408 ETQKHMQKCIENGRDFNIALGLKTSILTNGFRYALATGNWGEQSKTMQSKAGVAQVLNRF 467
Query: 446 TYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 497
Y ST ++ KLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL+L+ YI+
Sbjct: 468 NYISTLSHLRRVNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLLCYIS 527
Query: 498 IGSAAYPILEFLEEWGTENFE 518
+GS + I E+L+EWG N E
Sbjct: 528 VGSNSAKISEYLDEWGVVNLE 548
>gi|398404063|ref|XP_003853498.1| DNA-directed RNA polymerase II subunit RPB2 [Zymoseptoria tritici
IPO323]
gi|339473380|gb|EGP88474.1| hypothetical protein MYCGRDRAFT_99853 [Zymoseptoria tritici IPO323]
Length = 1231
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 258/570 (45%), Positives = 351/570 (61%), Gaps = 75/570 (13%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD- 75
T E+ W VI ++F+EKGLV QQLDSFDEF TMQ+IVD+ I I Q+ G +
Sbjct: 3 TAEDCWTVIHSFFDEKGLVSQQLDSFDEFASTTMQQIVDDQPAIVI---DQNLAGLDEES 59
Query: 76 ------------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK----- 118
+ +S+ MTE DG T + ARLRNLTYS+P+++ + K
Sbjct: 60 GMPIVKKRSSIKLGTLTVSQAAMTEGDGSTRAMHPHEARLRNLTYSSPMFIKLEKTTQLA 119
Query: 119 --RVIKKGHDGEE-----------------------------------VPIMLRSSYCTL 141
R + +D ++ +P+ML+S C L
Sbjct: 120 RERALGGHYDEDQGMWVAPPNWDGTVETVWEEDPDNPKQAIDQVFIGKLPVMLKSKICAL 179
Query: 142 YQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVC 201
S+ L ECP+D+GGYFIINGSEKVLIAQE+ + N V VF+K+ N VAE+
Sbjct: 180 RNRSEAELYAFQECPFDQGGYFIINGSEKVLIAQERSAANIVQVFRKKGTNT-PVVAELR 238
Query: 202 SMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDI 261
S E R S++ V + ++ A SGQ I +LPYIR ++PI I+FRA+G +DEDI
Sbjct: 239 SAVERGTRLISSMQVKLCNQAVA-AQHSGQTIKVSLPYIRADVPIAIVFRAMGVVSDEDI 297
Query: 262 LEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQ 317
L HIC + +DTQM E L+P LEEAF IQ+ +IG+RG G T+++ I+YA++I+Q
Sbjct: 298 LAHICPE-EDTQMREKLKPCLEEAFVIQDHDVALDHIGRRGQQQG-TKDRRIRYARDIMQ 355
Query: 318 KEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF 377
KE LPH+ + ETKKA++ G++++R+L CALGR EDDRDH+G KRLDLAGPL+ +F
Sbjct: 356 KEFLPHISQEEGSETKKAFFLGYMVNRMLQCALGRTEEDDRDHFGKKRLDLAGPLMAQVF 415
Query: 378 RTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRA 436
R F++L D+R Y+ +CV+ GKD N+ A+K IT GL+Y LATGNWG Q AA +A
Sbjct: 416 RLKFQQLVKDMRQYLHRCVETGKDFNIALAVKTNIITSGLRYCLATGNWGDQKKAASAKA 475
Query: 437 GVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 488
GVSQVLN TYAST ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVK
Sbjct: 476 GVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVK 535
Query: 489 NLALMVYITIGSAAYPILEFLEEWGTENFE 518
NL+LM Y+T+G+ PI++F+ + G + E
Sbjct: 536 NLSLMCYVTVGTPGEPIVDFMRQRGMDLLE 565
>gi|6606109|gb|AAF19067.1|AF107795_1 DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum]
Length = 1109
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 248/536 (46%), Positives = 343/536 (63%), Gaps = 68/536 (12%)
Query: 51 QEIVDESADIEIR---PESQHNPGQ------QSDFAEIYLSKPMMTESDGETATLFLKAA 101
QE+V+E + + P S P + F + L++P MTE DG T+ + + A
Sbjct: 1 QELVEEQGQVTLDQTVPPSDDEPDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEA 60
Query: 102 RLRNLTYSAPLYVDVTKRVIK--------------------------KG----------- 124
RLRNLTY++PLY+ ++K++++ +G
Sbjct: 61 RLRNLTYASPLYLGISKKIMEGRERLLSERDEEEEEIEEKGDEERRNRGTYLHWERKPTM 120
Query: 125 -HDGEE-------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQE 176
+ EE +PIML+S YC L ++AL ECPYD GGYF+INGSEKVLIAQE
Sbjct: 121 EDEAEEENIFIGKMPIMLKSKYCILKDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQE 180
Query: 177 KMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHAT 236
+ + N V VFKK P+ YVAE+ S E +R S + + + S+ + G G I +T
Sbjct: 181 RSAGNIVQVFKKAPPSPTPYVAEIRSAVEKGSRILSQLSIKLFSKGDSAKGGFGPTIRST 240
Query: 237 LPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ---- 292
LPYI+T+IPI+++FRALG +DEDIL HICYD DT M+E+L+P +EE F IQ+++
Sbjct: 241 LPYIKTDIPIVVVFRALGVVSDEDILNHICYDRNDTSMLEMLKPCIEEGFVIQDREVALD 300
Query: 293 YIGKRGAT-VGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+I KRG++ + + +EK ++YA++I+QKE LPH+ + ET+KA++ G+++HRLL CALG
Sbjct: 301 FISKRGSSPMSMNQEKRVRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALG 360
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDH+G KRLDLAGPLL LFR LF +LT D+ YVQ+CV+ G+ + L +KA
Sbjct: 361 RRYVDDRDHFGKKRLDLAGPLLANLFRVLFMRLTKDLYKYVQRCVETGRQLYLNIGVKAS 420
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
T+TGGLKY+LATGNWG Q AA ++AGVSQVLN TYAST ++ K+AKP
Sbjct: 421 TLTGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKP 480
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WG++CPAETPEGQACGLVKNLALM IT+G+ + PI++F+ + E E
Sbjct: 481 RQLHNTHWGLVCPAETPEGQACGLVKNLALMCCITVGTPSEPIIDFMIQRNREVLE 536
>gi|119177838|ref|XP_001240650.1| hypothetical protein CIMG_07813 [Coccidioides immitis RS]
Length = 1152
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 252/537 (46%), Positives = 341/537 (63%), Gaps = 68/537 (12%)
Query: 50 MQEIVDE----SADIEIRP-ESQHNPGQ----QSDFAEIYLSKPMMTESDGETATLFLKA 100
MQE+V+E + D I P E +P + F + L++P MTE DG T+ + +
Sbjct: 1 MQELVEEQGQVTLDQTIAPDEDDPDPVMVRRYELKFGTVMLARPSMTEGDGATSIMLPQE 60
Query: 101 ARLRNLTYSAPLYVDVTKRVIK------------------KGH----------------- 125
ARLRNLTY++PLY+ +TK++ + KG
Sbjct: 61 ARLRNLTYASPLYLGITKKIAEGRERSLAERDEDDDEPDAKGDEERRARGTYLQWEPKAL 120
Query: 126 -----DGEEV-----PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQ 175
D E + PIML+S YC L + AL ECPYD GGYFIINGSEKVLIAQ
Sbjct: 121 PEDEADEENIFIGKMPIMLKSKYCILKDLGEHALYNWNECPYDSGGYFIINGSEKVLIAQ 180
Query: 176 EKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHA 235
E+ + N V VFKK P+ YVAE+ S E +R S + + + ++ + G G I +
Sbjct: 181 ERSAGNIVQVFKKAPPSPTPYVAEIRSAVEKGSRILSQLSIKLFAKGDSSKGGFGPTIRS 240
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
TLPYI+T+IPI+++FRALG +DEDIL HICYD DT M+E+L+P +EE F IQ+++
Sbjct: 241 TLPYIKTDIPIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVAL 300
Query: 293 -YIGKRGAT-VGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCAL 350
+I KRG++ + EK ++YA++I+QKE LPH+ + ET+KA++ G+++H+LL CAL
Sbjct: 301 DFISKRGSSPTSMNHEKRVRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCAL 360
Query: 351 GRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKA 410
GRR DDRDH+G KRLDLAGPLL LFR LF +LT D+ YVQ+CV+ + + L +KA
Sbjct: 361 GRRDVDDRDHFGKKRLDLAGPLLANLFRVLFMRLTKDLYKYVQRCVETNRQLYLNIGVKA 420
Query: 411 KTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAK 461
T+TGGLKY+LATGNWG Q AA ++AGVSQVLN TYAST ++ K+AK
Sbjct: 421 STLTGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAK 480
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PRQLHN+ WG++CPAETPEGQACGLVKNLALM YIT+G+ + PI++F+ + E E
Sbjct: 481 PRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 537
>gi|167519879|ref|XP_001744279.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777365|gb|EDQ90982.1| predicted protein [Monosiga brevicollis MX1]
Length = 1166
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 258/532 (48%), Positives = 342/532 (64%), Gaps = 36/532 (6%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH-------NPG 71
E W VI+AYF EKGLVRQQLDSFD F T+Q+I+ S IE++ Q+ P
Sbjct: 11 EACWEVINAYFREKGLVRQQLDSFDHFITYTVQKIIKNSPPIEVQGRLQYLSNEIEEPPK 70
Query: 72 QQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV- 130
F + + P E DG +F RLRNLTY + + ++T V +K + EV
Sbjct: 71 HTISFGQAGFALPQHKEEDGNYDHVFPNDCRLRNLTYQSLMQCEITHTVEQKNPETGEVT 130
Query: 131 ---------PIMLRSSYCTLYQ-NSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMST 180
P+MLRS YCTL + + + ++ ECP D GGYFIINGSEKVLIAQEKM+
Sbjct: 131 TTPALLGKVPMMLRSKYCTLNKMETFRDFYDINECPLDPGGYFIINGSEKVLIAQEKMAG 190
Query: 181 NHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSA--KGGSS-GQYIHATL 237
N VYVF+K+ +K+ +V E+ S+ E NRP ST+ V ML S KG ++ G+ IHA+L
Sbjct: 191 NTVYVFEKKD-SKHMFVTEMRSIVEDSNRPTSTMMVKMLRGGSGGTKGRATFGRVIHASL 249
Query: 238 PYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQY---- 293
PYIR +IP+++LFRALGF D ILEHI YDF D +MMELL+PSL+EAF +Q ++
Sbjct: 250 PYIRQDIPVVVLFRALGFEDDRSILEHIIYDFDDMEMMELLKPSLDEAFVVQTREVALDL 309
Query: 294 IGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGR 352
IG+R A VG++++ +++A++ILQKEMLPH+G G CE KA++ G+++HR L AL R
Sbjct: 310 IGRRSMAAVGMSKDMRVRFARDILQKEMLPHIGVGPQCEQAKAFFLGYMVHRTLQAALRR 369
Query: 353 RAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKT 412
R DDRDHYGNKRLDLAG L+ LFRTLF++LT + V V+ + + +
Sbjct: 370 RELDDRDHYGNKRLDLAGSLVAYLFRTLFKQLTKKLTRKVTDLVNRNHKFMVITLLDVEI 429
Query: 413 ITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPR 463
+ GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ + K+AKPR
Sbjct: 430 LGSGLRYSLATGNWGDQKKAHEARAGVSQVLNRLTFASTLSHLRRLNSPIDRTGKIAKPR 489
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
QLHN+ WG +CPAETPEG A GLVKNL+LM +T+GS P+ + L G +
Sbjct: 490 QLHNTHWGYICPAETPEGHAVGLVKNLSLMASLTVGSDDTPVHDLLGASGLD 541
>gi|258596921|ref|XP_001349662.2| DNA-directed RNA polymerase II second largest subunit, putative
[Plasmodium falciparum 3D7]
gi|254688481|gb|AAC71932.3| DNA-directed RNA polymerase II second largest subunit, putative
[Plasmodium falciparum 3D7]
Length = 1340
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 255/554 (46%), Positives = 360/554 (64%), Gaps = 48/554 (8%)
Query: 9 EEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH 68
+++ E+ T++++W VI ++F GLV QQ++S+++F + MQEI+DE IEIRP+ Q+
Sbjct: 24 DKNPNEQITEDDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKIEIRPQPQY 83
Query: 69 NPGQQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVD----- 115
+ + F ++ L +P E + L+ + ARLRNLTYS+ +Y+D
Sbjct: 84 RTDRDENDNIIYSLKFGQLSLDRPFYDEKNLSNKNLWPQEARLRNLTYSSAIYIDIEQST 143
Query: 116 -----VTKR-VIKKGHDGEEV-----PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFI 164
VTK+ V+K+ E + P+ML+S +C + + ++GEC YD+GGYFI
Sbjct: 144 YIIDEVTKKPVLKEKFIYERINLGRIPLMLKSMFCWTKGLPENEIADMGECSYDQGGYFI 203
Query: 165 INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSA 224
+NG EKVL+AQE+M+ N +YVFKK+QP+K+ +VAE+ S E +++ S V M +R+
Sbjct: 204 VNGGEKVLVAQERMANNFIYVFKKKQPSKFGWVAEIRSQME-RSQATSGFSVKMKTRS-- 260
Query: 225 KGGS------SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
GGS SG + ATLPYIRTEI + ILFRALG T+D DIL+ I YDF D M+ L
Sbjct: 261 -GGSQYGSNKSGGQLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKLMINAL 319
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
R +LEE Q +IGKRG TVG +REK I YAKE+L+KE+LPH+GT E+KK
Sbjct: 320 RETLEECIEYPTQDVCLDFIGKRGPTVGASREKRILYAKELLRKEVLPHMGTHPGVESKK 379
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
+Y+ G++I+RLLL LGR EDDRDH+G KRLD+AGPL+ F T FRK+ DVR +Q+
Sbjct: 380 SYFIGYMINRLLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFSTYFRKMAKDVRRVLQR 439
Query: 395 CVDNGKDVNLQFAIKA-KTITGGLKYSLATGNWGQG-NAAGTRAGVSQVLNCLTYASTFT 452
+DN K ++ AI++ IT G++Y LATGNWG+ + R GV+QVLN LTY+S +
Sbjct: 440 QIDNNKPFDVAGAIRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLS 499
Query: 453 YYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYP 504
+ K+AKPRQLHN+ WGM+CP ETPEGQ+ GLVKNL+LM I++G++
Sbjct: 500 HLRRLNTPLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNN 559
Query: 505 ILEFLEEWGTENFE 518
I EFL EWG E+ +
Sbjct: 560 IYEFLTEWGLESLD 573
>gi|367479107|gb|AEX16088.1| RPB2 [Mucor circinelloides f. lusitanicus]
Length = 931
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/372 (61%), Positives = 284/372 (76%), Gaps = 14/372 (3%)
Query: 160 GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPML 219
GGYF+INGSEKVLIAQE+M+TN VYVF K P+ + Y AE+ S E ++ S +F+ M+
Sbjct: 2 GGYFVINGSEKVLIAQERMATNTVYVFSKAPPSNFQYTAEIRSQPEKGSKNASPLFIKMM 61
Query: 220 SRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
TS +G SSGQ I A LPYIR+E+PI+I+FRALG AD D+LEHICYD D +M+ELL+
Sbjct: 62 RATSERG-SSGQCIRAALPYIRSEVPIVIVFRALGQVADRDVLEHICYDRNDYEMLELLK 120
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
PS+EE+F IQ+Q YIGKRG TVG T++K IKYA EILQKE+LPHVGT ET+K+
Sbjct: 121 PSIEESFVIQDQDVALDYIGKRGTTVGATKDKRIKYASEILQKELLPHVGTAYKTETRKS 180
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y+FG++IHRLLL AL RR DDRDHYG KR+DLAGPL+ LFR LF+KLT DV Y+QKC
Sbjct: 181 YFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGPLMASLFRLLFKKLTKDVAKYLQKC 240
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
+++ ++ NL A+K+ TIT GLKYSLATGNWG Q A +RAGVSQVLN TY ST ++
Sbjct: 241 IESSREFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMQSRAGVSQVLNRYTYTSTLSHL 300
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YI++GS+A P++
Sbjct: 301 RRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYISVGSSATPLI 360
Query: 507 EFLEEWGTENFE 518
FLEEW EN E
Sbjct: 361 MFLEEWAMENLE 372
>gi|390371063|dbj|GAB64944.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Plasmodium
cynomolgi strain B]
Length = 1335
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 254/564 (45%), Positives = 363/564 (64%), Gaps = 48/564 (8%)
Query: 2 MMEEERLEED--EEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESAD 59
M + LEED EEE T+E++W VI ++F GLV QQ++S+++F + MQEI+DE
Sbjct: 15 MHPDAPLEEDHDEEERITEEDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPH 74
Query: 60 IEIRPESQHNPGQQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
IEIRP+ Q+ + + F ++ L +P E + L+ + ARLRNLTYS+
Sbjct: 75 IEIRPQPQYRSDRDDNKNVMYSLKFGQLSLDRPFYDERNLTNKNLWPQEARLRNLTYSSA 134
Query: 112 LYVDVTKR--VIKKGHDGE--------------EVPIMLRSSYCTLYQNSQKALTELGEC 155
+Y+D+ + V+++G + +P+ML+S +C + + ++GEC
Sbjct: 135 IYIDIEQSTYVVEEGSKNQILKEKFVYERINLGRIPLMLKSMFCWTKGLPESEIADMGEC 194
Query: 156 PYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIF 215
+D+GGYFI+NG EKVL+AQE+M+ N +YVFKK+QP+K+ +VAE+ S E +++ S
Sbjct: 195 AFDQGGYFIVNGGEKVLVAQERMAHNFIYVFKKKQPSKFGWVAEIRSQME-RSQATSAFS 253
Query: 216 VPMLSRTSAKGGSSGQY-------IHATLPYIRTEIPIIILFRALGFTADEDILEHICYD 268
V M ++T ++G G + ATLPYIRTEI + ILFRALG T+D DIL+ I YD
Sbjct: 254 VKMKTKTGSRGSGGGGSSARTGGQLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYD 313
Query: 269 FQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHV 324
F D M+ LR +LEE Q +IGKRG TVG +REK I YAKE+L+KE+LPH+
Sbjct: 314 FNDKMMINTLRETLEECIDYPTQDICLDFIGKRGPTVGASREKRILYAKELLRKEVLPHM 373
Query: 325 GTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKL 384
GTG E+KK+Y+ G++I+RLLL LGR EDDRDH+G KRLD+AGPL+ F T FRK+
Sbjct: 374 GTGPGVESKKSYFIGYMINRLLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFSTYFRKM 433
Query: 385 TGDVRSYVQKCVDNGKDVNLQFAIKA-KTITGGLKYSLATGNWGQG-NAAGTRAGVSQVL 442
DV+ +Q+ +DN K ++ A+++ IT G++Y LATGNWG+ + R GV+QVL
Sbjct: 434 AKDVKRVLQRQIDNNKPFDVAGAVRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVL 493
Query: 443 NCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMV 494
N LTY+S ++ K+AKPRQLHN+ WGM+CP ETPEGQ+ GLVKNL+LM
Sbjct: 494 NRLTYSSCLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMC 553
Query: 495 YITIGSAAYPILEFLEEWGTENFE 518
I++G++ I EFL EWG E+ +
Sbjct: 554 DISVGTSTNNIFEFLLEWGLESLD 577
>gi|169806505|ref|XP_001827997.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
gi|161779137|gb|EDQ31162.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
Length = 1138
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 245/530 (46%), Positives = 351/530 (66%), Gaps = 37/530 (6%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR--PESQHNPGQQS 74
+E WA+I+++F++KGLVRQQLDSF++F + MQEI+DE++ I ++ P + ++ ++
Sbjct: 17 NEENNWAIITSFFDQKGLVRQQLDSFNQFVKIKMQEIIDENSIISVKSIPTAGNSIEREI 76
Query: 75 D--FAEI-YLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE--- 128
F +I L P+ TE DG ++ + ARLR+LTY +++DV K + G + +
Sbjct: 77 KLYFGQISILGPPINTEIDGTSSKILPNEARLRDLTYWVNMFIDVKKAYYENGIEVDVSK 136
Query: 129 -------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTN 181
+P+M++S C L + + K LGECPYD+GGYFII G EKV++AQE+++TN
Sbjct: 137 TIRVPFGSLPVMVKSELCALKELNDKDNIRLGECPYDQGGYFIITGGEKVIVAQERIATN 196
Query: 182 HVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIR 241
V++FKK QP Y Y AE+ S+AE ++ PS IF S K + + I A++ ++
Sbjct: 197 MVHIFKKSQPAPYTYFAEIRSVAEIGSKLPS-IF-------SLKVVKNLRVIRASINLVK 248
Query: 242 TEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ----QYIGKR 297
+IP++I+FRALGF +D++IL +I YD D ++ E L SLEEA IQ+Q +IGKR
Sbjct: 249 QDIPVLIIFRALGFNSDKEILSYIQYD-NDKELNEYLLNSLEEASCIQDQLSALDFIGKR 307
Query: 298 GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDD 357
A +G + K I +AK+IL KE LPH+G +FCETKKAY+ G++I+++LL G+R DD
Sbjct: 308 SAPIGSPKSKRIDFAKQILIKEFLPHIGQQEFCETKKAYFLGYMINKILLVITGKRDVDD 367
Query: 358 RDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGL 417
RDHYG KR+DL+GPLL LF+ LF+KL + Y+QKCV+N ++ NL +K+ IT G
Sbjct: 368 RDHYGKKRMDLSGPLLANLFKVLFKKLLTETTKYLQKCVENNREFNLTIGLKSSIITQGF 427
Query: 418 KYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLHNS 468
KY+LATGNWG Q A TRAGV+QVL+ + ST ++ KLA PRQLHN+
Sbjct: 428 KYALATGNWGHQEKAMSTRAGVAQVLSRYNFLSTLSHLRRVNTPIEKEGKLAAPRQLHNT 487
Query: 469 QWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
WGM+CP ETPEG ACGLVKNL+LM YI++G ++ I+E LEE G E E
Sbjct: 488 HWGMICPIETPEGHACGLVKNLSLMAYISVGKSSNQIIEILEELGVERLE 537
>gi|440639504|gb|ELR09423.1| DNA-directed RNA polymerase II subunit B [Geomyces destructans
20631-21]
Length = 1272
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 222/403 (55%), Positives = 297/403 (73%), Gaps = 13/403 (3%)
Query: 129 EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKK 188
++PIML+S YC L L ECPYD+GGYF+INGSEKVLIAQE+ + N V VFKK
Sbjct: 200 KLPIMLKSKYCNLKDMDDDELYGWNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKK 259
Query: 189 RQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIII 248
P+ ++AE+ S E +R S++ + + S+ + GS GQ I +TLPYI+++IPI +
Sbjct: 260 PPPSPTPFIAEIRSALEKGSRLISSLTIKLHSKGDTQRGSFGQTIKSTLPYIKSDIPIAV 319
Query: 249 LFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVT 304
+FRALG +DEDIL H+CYD +DTQM+E+++P +EEAF IQ+++ +IGKRG ++GV
Sbjct: 320 VFRALGVVSDEDILNHVCYDRKDTQMLEMMKPCIEEAFVIQDREVALDFIGKRGQSLGVP 379
Query: 305 REKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNK 364
R+K IK+A++I+QKE+LPH+ + ET+KA++ G+++H+LL CALGRR DDRDH+G K
Sbjct: 380 RDKRIKHARDIMQKELLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKK 439
Query: 365 RLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATG 424
RLDLAGPLL LFR LFRKLTGD+ Y+Q+CV+N K+ N IKA T+T GLKYSLATG
Sbjct: 440 RLDLAGPLLAKLFRNLFRKLTGDLYKYIQRCVENKKEFNPALGIKATTLTNGLKYSLATG 499
Query: 425 NWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCP 475
NWG Q AA + AGVSQVLN T+AST ++ K+AKPRQLHN+ WG++CP
Sbjct: 500 NWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCP 559
Query: 476 AETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
AETPEGQACGLVKNLALM Y+T+G+ + PI+EF+ + E E
Sbjct: 560 AETPEGQACGLVKNLALMCYVTVGTPSEPIIEFMIQRSMEVLE 602
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 78/122 (63%), Gaps = 14/122 (11%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
E EE T E W VIS++FE KGLV QQLDSFDEF +MQ++++E++ + + Q+N
Sbjct: 18 EAEEPTITAEACWTVISSFFESKGLVSQQLDSFDEFVSTSMQDLINENSQLTL---DQNN 74
Query: 70 PGQ-----------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK 118
P + F +++++PMMTE DG TA LF + ARLRNLTYS+ LY+ + K
Sbjct: 75 PPPVNGEPIQLRRYEIKFRTVFIAEPMMTEGDGTTARLFPQEARLRNLTYSSALYIHLDK 134
Query: 119 RV 120
+V
Sbjct: 135 KV 136
>gi|156093703|ref|XP_001612890.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Plasmodium
vivax Sal-1]
gi|148801764|gb|EDL43163.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Plasmodium vivax]
Length = 1339
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 244/541 (45%), Positives = 352/541 (65%), Gaps = 43/541 (7%)
Query: 20 EAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD---- 75
++W VI ++F GLV QQ++S+++F + MQEI+DE IEIRP+ Q+ + +
Sbjct: 35 DSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPQIEIRPQPQYRSDRDDNKNVM 94
Query: 76 ----FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTK-----------RV 120
F ++ L +P E + L+ + ARLRNLTYS+ +Y+D+ + ++
Sbjct: 95 YALKFGQLSLDRPFYDERNLTNKNLWPQEARLRNLTYSSAIYIDIEQSTYVVDESTRSQI 154
Query: 121 IKKGHDGEEV-----PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQ 175
+K+ E + P+ML+S +C + + ++GEC +D+GGYFI+NG EKVL+AQ
Sbjct: 155 LKEKFIYERINLGRIPLMLKSMFCWTKGLPESEIADMGECAFDQGGYFIVNGGEKVLVAQ 214
Query: 176 EKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGS----SGQ 231
E+M+ N +YVFKK+QP+K+ +VAE+ S E +++ S V M ++T ++G +G
Sbjct: 215 ERMAHNFIYVFKKKQPSKFGWVAEIRSQME-RSQATSAFSVKMKTKTGSRGSGGSARTGG 273
Query: 232 YIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ 291
+ ATLPYIRTEI + ILFRALG T+D DIL+ I YDF D M+ LR +LEE Q
Sbjct: 274 QLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKMMINTLRETLEECIDYPTQ 333
Query: 292 Q----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLL 347
+IGKRG TVG +REK I YAKE+L+KE+LPH+GTG E+KK+Y+ G++I+RLLL
Sbjct: 334 DICLDFIGKRGPTVGASREKRILYAKELLRKEVLPHMGTGPGVESKKSYFIGYMINRLLL 393
Query: 348 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA 407
LGR EDDRDH+G KRLD+AGPL+ F T FRK+ DV+ +Q+ +DN K ++ A
Sbjct: 394 AELGRIKEDDRDHFGKKRLDIAGPLMASSFSTYFRKMAKDVKRVLQRQIDNNKPFDVAGA 453
Query: 408 IKA-KTITGGLKYSLATGNWGQG-NAAGTRAGVSQVLNCLTYASTFTYYLSW-------- 457
+++ IT G++Y LATGNWG+ + R GV+QVLN LTY+S ++
Sbjct: 454 VRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRLNTPLGREG 513
Query: 458 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
K+AKPRQLHN+ WGM+CP ETPEGQ+ GLVKNL+LM I++G++ I EFL EWG E+
Sbjct: 514 KMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIFEFLLEWGLESL 573
Query: 518 E 518
+
Sbjct: 574 D 574
>gi|403161549|ref|XP_003321874.2| DNA-directed RNA polymerase II subunit RPB2 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|375171826|gb|EFP77455.2| DNA-directed RNA polymerase II subunit RPB2 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 1131
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 260/472 (55%), Positives = 317/472 (67%), Gaps = 49/472 (10%)
Query: 86 MTESDGETATLFLKAARLRNLTYSAPLYVDVTKR----------------VIKKGHDGEE 129
MTESDG + +F ARLRNLTYS+PLYVD++K I D +E
Sbjct: 1 MTESDGTVSPMFPNEARLRNLTYSSPLYVDMSKSNKLATGEFDEETGEPIYIADDVDNDE 60
Query: 130 ----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMS 179
VPIMLRS +C L + L EL ECP+D+GGYF+INGSEKVLIAQE+M+
Sbjct: 61 KNSTQIYIGKVPIMLRSEFCILDKLEDPGLYELNECPFDQGGYFVINGSEKVLIAQERMA 120
Query: 180 TNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPY 239
NHVYVF K P E ++ S++ V M A+ G I TLPY
Sbjct: 121 ANHVYVFAKAGP----------LAVEKGSKTVSSMQVKMYGGHKAEKAGGGATIKTTLPY 170
Query: 240 IRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIG 295
IR +IPI+++FRALG D+DILEHICYD DT M E+L+P LE++F IQ Q+ +IG
Sbjct: 171 IRNDIPIVVVFRALGIIPDKDILEHICYDRNDTAMFEMLKPCLEDSFPIQEQEVALDFIG 230
Query: 296 KRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
+RG G++REK +KYA+EILQKEMLPH+ + + KKAY+FG++IHRLLL AL RR
Sbjct: 231 RRGTATGLSREKRLKYAEEILQKEMLPHISMSEGQQGKKAYFFGYMIHRLLLAALDRRDL 290
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITG 415
DDRDH+G KRLDLAGPLL GLFR LFRKLT DV ++QKCV+ K NL A+K+ TIT
Sbjct: 291 DDRDHFGKKRLDLAGPLLAGLFRMLFRKLTKDVYRHLQKCVEMQKPFNLNAAVKSNTITN 350
Query: 416 GLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLH 466
GLKYSLATGNWG Q A RAGVSQVLN T+AST ++ K+AKPRQLH
Sbjct: 351 GLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLH 410
Query: 467 NSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
NS WGM+CPAETPEGQACGLVKNLALM YI++GS + PI+EFLEEWG E+ +
Sbjct: 411 NSHWGMVCPAETPEGQACGLVKNLALMSYISVGSPSAPIVEFLEEWGMESLD 462
>gi|120561277|gb|ABM27023.1| RNA polymerase II second largest subunit, partial [Neocallimastix
frontalis]
Length = 915
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/366 (62%), Positives = 280/366 (76%), Gaps = 15/366 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+M++N +YVF K P+ Y+Y AE+ S E+ +R ST+++ ML++ SA+
Sbjct: 1 SEKVLIAQERMASNVIYVFAKSPPSPYSYTAEIRSAVETGSRHASTLYIKMLAKASARAN 60
Query: 228 SS--GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA 285
S GQ I ATLPYIR +IPI+I+FRALG D DILEHICYDF DTQM+E+L+P +E+A
Sbjct: 61 SEIVGQSIKATLPYIRQDIPIVIVFRALGIVPDRDILEHICYDFNDTQMLEMLKPCIEDA 120
Query: 286 FFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHI 341
F IQ+++ +IGKRG TVGVT+EK ++YA EILQKE+LPH+GT ETKKAY+FG++
Sbjct: 121 FVIQDKEIALDFIGKRGTTVGVTKEKRMRYAAEILQKELLPHIGTKAHTETKKAYFFGYM 180
Query: 342 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD 401
IHRLLL AL RR DDRDH+G KRLDLAGPLLG LFR LFRKLT DV +QKC+D ++
Sbjct: 181 IHRLLLAALERRECDDRDHFGKKRLDLAGPLLGSLFRMLFRKLTSDVSKSLQKCIDRNRE 240
Query: 402 VNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--- 457
NL AI+ TIT GLKYSLATGNWG Q +RAGVSQVLN T+AST ++
Sbjct: 241 FNLNVAIRPNTITDGLKYSLATGNWGAQSKFMQSRAGVSQVLNRYTFASTLSHLRRLNTP 300
Query: 458 -----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEW 512
KLAKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM Y+++GS++ PI+EFLEEW
Sbjct: 301 IGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYVSVGSSSAPIIEFLEEW 360
Query: 513 GTENFE 518
EN E
Sbjct: 361 SMENME 366
>gi|336265263|ref|XP_003347404.1| hypothetical protein SMAC_08679 [Sordaria macrospora k-hell]
gi|380087481|emb|CCC14221.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1274
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 255/569 (44%), Positives = 343/569 (60%), Gaps = 72/569 (12%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI-RPESQHNPGQQ-- 73
T E++W VIS+YF+ KGLV QQ+DSF+EF +T+Q ++DE AD+ + P + G+
Sbjct: 44 TPEDSWEVISSYFDLKGLVSQQIDSFNEFTTDTVQSLIDEYADLTLDHPSPGDDDGRDII 103
Query: 74 -----SDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR--------- 119
F EI +S+P +TE+ GET +L R RNLTYSAP+Y VTKR
Sbjct: 104 LRRYDVHFGEIIISRPTLTEATGETISLLPYECRDRNLTYSAPIYCKVTKRARIAVSEKK 163
Query: 120 ----VIKKGHD-----GE-----------------------------------EVPIMLR 135
+ HD GE ++PIM++
Sbjct: 164 PLNQLTDDEHDHMARTGEHPTVLRWIEEESAPPEPPKEDKVNAENLKGYLFLGKIPIMVK 223
Query: 136 SSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA 195
S C LY ++L L ECPYD+GGYFIINGSEKVLIAQE+ + N V VFKK +
Sbjct: 224 SKICHLYMEDDESLFTLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVS 283
Query: 196 YVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGF 255
Y AE+ S E +R S++ + + ++ G + TLPY++ E+ + I+FRALG
Sbjct: 284 YQAEIRSALEKGSRLISSLQMRLHTKADQNKGRLANTVSVTLPYVKEEVSLAIVFRALGV 343
Query: 256 TADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRG-ATVGVTREKMIK 310
+DEDIL HICYD +D+QM+E LRP +EEAF IQ+++ YIGKRG GV R IK
Sbjct: 344 VSDEDILNHICYDRRDSQMLEALRPCIEEAFCIQDREVALDYIGKRGNGGAGVNRNARIK 403
Query: 311 YAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 370
AK++LQKE+LPH+ + CET+KA++ G+++H+LL C LGRR DDRDH+G KRLDLAG
Sbjct: 404 AAKDMLQKELLPHISQAEGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAG 463
Query: 371 PLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QG 429
PLL LFR + R+LT D+ Y+++CVD K +L IKA T+T GLKYSLATGNWG Q
Sbjct: 464 PLLAKLFRGIVRRLTQDLMGYMKRCVDTNKHFSLALGIKASTLTNGLKYSLATGNWGDQK 523
Query: 430 NAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 489
A + AGVSQVLN T+AST ++ L + + P ETPEGQACGLVKN
Sbjct: 524 KAMSSTAGVSQVLNRYTFASTLSH-----LRRTNTPIGRDGKLAKPPETPEGQACGLVKN 578
Query: 490 LALMVYITIGSAAYPILEFLEEWGTENFE 518
L+LM ++++G+ A PI+EF+ E E
Sbjct: 579 LSLMCFVSVGTLADPIIEFMVARNMEVLE 607
>gi|294874302|ref|XP_002766888.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC
50983]
gi|239868263|gb|EEQ99605.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC
50983]
Length = 1171
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 251/544 (46%), Positives = 338/544 (62%), Gaps = 77/544 (14%)
Query: 50 MQEIVDESADIEIRPE----------SQHNPG-------QQS------------------ 74
MQEIVDE I I P+ SQ++P QQ+
Sbjct: 1 MQEIVDECPPITIIPQNQPVCRLNGLSQYDPNTSKQQQMQQNVGYVYELSRLGREGPGVY 60
Query: 75 -------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT---------- 117
+F ++ L+KP + E DG +L ARLRNLTYS+P+YV+VT
Sbjct: 61 MDSSFPVEFGQLSLNKPTVEEVDGAMTSLTPNQARLRNLTYSSPVYVNVTQTTYALADPD 120
Query: 118 -----KRVIKKGHDGE----EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGS 168
K++I + + +P+ML+S YC L +++ L E+GEC +D+GGYFIINGS
Sbjct: 121 DPNSEKQLISEDSYSKILIGRIPMMLKSEYCWLKNQTERGLVEMGECVFDQGGYFIINGS 180
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGS 228
EKVLIA E+M+ N VY F+K+QP KY ++ E+ S AE S V ML+ + +
Sbjct: 181 EKVLIAMERMANNFVYCFQKKQPAKYTWICEIRSQAEGM-LSTSGFSVKMLANLGGRSAA 239
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
GQ + ++PYI +IP++ILFRALG +D +++E I YDF DTQMM LLRPS+EEA I
Sbjct: 240 RGQIV-CSMPYINADIPVVILFRALGCVSDREVIERIVYDFSDTQMMFLLRPSIEEAMPI 298
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
+Q+ +I KRG T+G ++ I+YAKE+LQKE+LPH+G +CE +KAY+ G+++HR
Sbjct: 299 MSQEVALDFIAKRGPTIGTSKSGRIQYAKELLQKELLPHLGVKQYCEPRKAYFIGYMVHR 358
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LLL LGR AEDDRDH+G KR+D+AGPL+ F LFRKL D + +Q+ VD+G+ +L
Sbjct: 359 LLLGQLGRIAEDDRDHFGKKRMDMAGPLMAASFAQLFRKLVQDSKRILQRQVDSGRHFDL 418
Query: 405 QFAIK-AKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
AI+ A +IT GL+Y LATGNWG + R GVSQVLN LT+ ST ++
Sbjct: 419 NSAIRSASSITDGLRYQLATGNWGIDKSGKSVRTGVSQVLNRLTFMSTMSHLRRMNTPLE 478
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
S KLAKPRQLHN+ WGM+CPAETPEGQA GLVKN+ALM IT+GS + +FL EWG
Sbjct: 479 RSGKLAKPRQLHNTHWGMICPAETPEGQAVGLVKNIALMCTITVGSLPNVVYDFLNEWGL 538
Query: 515 ENFE 518
EN +
Sbjct: 539 ENLD 542
>gi|82914537|ref|XP_728803.1| DNA-directed RNA polymerase subunit beta [Plasmodium yoelii yoelii
17XNL]
gi|23485337|gb|EAA20368.1| DNA-directed RNA polymerase, beta subunit [Plasmodium yoelii
yoelii]
Length = 1312
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 243/557 (43%), Positives = 361/557 (64%), Gaps = 44/557 (7%)
Query: 5 EERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRP 64
E+ ++D+E++ T+E++W VI ++F GLV QQ++S+++F + MQEI+DE +IEI+P
Sbjct: 22 EDVSDKDDEDQITEEDSWIVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPNIEIKP 81
Query: 65 ESQHNPGQQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV 116
+ Q+ P + + F ++ L +P E + L+ + ARLRNLTYS+ +Y+D+
Sbjct: 82 QPQYRPDKDENNNIIYSLKFGQLSLDRPFFDEKNLINKNLWPQEARLRNLTYSSAIYIDI 141
Query: 117 -----------TKRVIKKGHDGEEV-----PIMLRSSYCTLYQNSQKALTELGECPYDEG 160
K+++K+ E + P+ML+S +C ++++GEC D+G
Sbjct: 142 EQSTYIVDENTKKQILKEKFVYERINLGRIPLMLKSMFCWTKGLPDNDISDMGECSLDQG 201
Query: 161 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLS 220
GYFI+NG EKVL+AQE+M+ N +YVFKK+ +K+ ++AE+ S E +++ S V M +
Sbjct: 202 GYFIVNGGEKVLVAQERMANNFIYVFKKKHSSKFGWIAEIRSQME-KSQATSAFSVKMKT 260
Query: 221 RTSAKGGSSGQ-----YIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMM 275
++ ++G + ATLPYIRTEI + ILFRALG T+D DIL+ I YD D M+
Sbjct: 261 KSGSRGSGGSGKSSGGLLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDLNDKMMI 320
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
+L+ +LEE Q YIGKRG TVG +R+K I YAKE+L+KE+LPH+GTG E
Sbjct: 321 NILKETLEECIDYPTQDICLDYIGKRGPTVGASRDKRILYAKELLRKEVLPHMGTGPGVE 380
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
++K+Y+ G++I+RLLL LGR EDDRDH+G KRLD+AGPL+ F T FRK+ DV+
Sbjct: 381 SRKSYFIGYMINRLLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFATYFRKMAKDVKRV 440
Query: 392 VQKCVDNGKDVNLQFAIKA-KTITGGLKYSLATGNWGQG-NAAGTRAGVSQVLNCLTYAS 449
+Q+ +DN K ++ AI++ IT G++Y LATGNWG+ + R GV+QVLN LTY+S
Sbjct: 441 LQRQIDNNKPFDVAGAIRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSS 500
Query: 450 TFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
++ K+AKPRQLHN+ WGM+CP ETPEGQ+ GLVKNL+LM I++G++
Sbjct: 501 CLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTS 560
Query: 502 AYPILEFLEEWGTENFE 518
I EFL EWG E+ +
Sbjct: 561 TNNIYEFLTEWGLESLD 577
>gi|385301281|gb|EIF45483.1| dna-directed rna polymerase [Dekkera bruxellensis AWRI1499]
Length = 1155
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/402 (56%), Positives = 294/402 (73%), Gaps = 15/402 (3%)
Query: 129 EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKK 188
+VPIML+S +CTLY ++ L E+ ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK
Sbjct: 126 KVPIMLKSKFCTLYGLTEDELYEIRECPYDMGGYFIINGSEKVLIAQERSAANIVQVFKK 185
Query: 189 RQPNKYAYVAEVCSMAESQNRPPSTIFVPML--SRTSAKGGSSGQYIHATLPYIRTEIPI 246
P+ ++VAE+ S E +R S+I V + +S K G G+ I +LPYI+++IPI
Sbjct: 186 PAPSPISHVAEIRSALEHGSRLISSIQVKLTRGGASSMKNGGVGRSIKTSLPYIKSDIPI 245
Query: 247 IILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVG 302
+I+FRALG D DIL+HICYD D QMME+L+P +EE F IQ+Q+ +IG+RG VG
Sbjct: 246 VIVFRALGVIEDGDILQHICYDENDWQMMEMLKPCIEEGFLIQSQEVALDFIGRRGNAVG 305
Query: 303 VTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYG 362
+ R++ I++AK+ILQ+E LPH+ ET KAY+ G+I++RLLLCAL RR DDRDH+G
Sbjct: 306 IKRDRRIQFAKDILQREFLPHISQDSGYETNKAYFLGYIVNRLLLCALERREPDDRDHFG 365
Query: 363 NKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLA 422
KRLDLAGPLL LFR LFRKL+ D+ Y+Q+C++ G+D N+ A+K+ TIT GLKYSLA
Sbjct: 366 KKRLDLAGPLLANLFRILFRKLSKDIYRYMQRCIERGEDFNIVSAVKSTTITSGLKYSLA 425
Query: 423 TGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMM 473
TGNWG Q A +RAGVSQVLN TYAST ++ KLAKPRQLHN+ WG++
Sbjct: 426 TGNWGEQKKAMSSRAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLV 485
Query: 474 CPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
CPAETPEGQACGLVKNL+LM I++G+++ PI LEEWG E
Sbjct: 486 CPAETPEGQACGLVKNLSLMAGISVGTSSEPISYLLEEWGLE 527
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 36/48 (75%)
Query: 80 YLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
+LSKP TE+DG T+TL + ARLRNLTYSAPLYV++ K V + DG
Sbjct: 16 FLSKPSQTEADGTTSTLLPQEARLRNLTYSAPLYVEMKKMVKESIDDG 63
>gi|120561249|gb|ABM27009.1| RNA polymerase II second largest subunit, partial [Mucor hiemalis]
Length = 884
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 227/364 (62%), Positives = 278/364 (76%), Gaps = 14/364 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+M+TN VYVF K P+ + Y AE+ S E ++ S +F+ M+ R SA+ G
Sbjct: 1 SEKVLIAQERMATNTVYVFSKAPPSNFQYTAEIRSQNEKGSKNASPLFIKMM-RASAERG 59
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQ I A LPYIR+E+PI+I+FRALG AD D+LEHICYD D +M+ELL+PS+EEAF
Sbjct: 60 SSGQCIRAALPYIRSEVPIVIVFRALGQVADRDVLEHICYDRNDYEMLELLKPSIEEAFV 119
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ+Q +IGKRG TVG TRE+ IKYA EILQKE+LPHVGT ET+K+Y+FG++IH
Sbjct: 120 IQDQDVALDFIGKRGTTVGATRERRIKYASEILQKELLPHVGTAYKTETRKSYFFGYMIH 179
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLL AL RR DDRDHYG KR+DLAG L+ GLFR LF+KLT DV Y+QKC+++ ++ N
Sbjct: 180 RLLLAALERRELDDRDHYGKKRMDLAGVLMSGLFRLLFKKLTKDVAKYLQKCIESSREFN 239
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
L A+K+ TIT GLKYSLATGNWG Q AA RAGVSQVLN T+AST ++
Sbjct: 240 LTLAVKSNTITNGLKYSLATGNWGDQKKAAQARAGVSQVLNRYTFASTLSHLRRCNTPIG 299
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YI++GSAA P++ FLEEW
Sbjct: 300 RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYISVGSAATPLIMFLEEWAM 359
Query: 515 ENFE 518
EN E
Sbjct: 360 ENLE 363
>gi|46142986|gb|AAS80336.1| RNA polymerase II [Gibberella moniliformis]
Length = 973
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 235/502 (46%), Positives = 324/502 (64%), Gaps = 66/502 (13%)
Query: 81 LSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV-------------------- 120
+S+P M+E+DG L R RNLTY+AP Y+ +TK+V
Sbjct: 1 VSRPSMSETDGTVTNLLPYECRDRNLTYAAPTYLKITKKVSVAVDKEVPLHEMDDEQQAE 60
Query: 121 ---------------------IKKGHDGEEV------PIMLRSSYCTLYQNSQKALTELG 153
IK + E+ PIM++S C L +S + L L
Sbjct: 61 YKRTGENPTKLVWEVEEDAGSIKAEDEPSEMIFIGKMPIMVKSKICHLSSHSDEDLFMLN 120
Query: 154 ECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPST 213
ECPYD+GGYF+INGSEKVLIAQE+ + N V VFKK QP+ + Y AE+ S E +R S+
Sbjct: 121 ECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPFTYTAEIRSALEKGSRLISS 180
Query: 214 IFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQ 273
+ + + + + G GQ I ATLP+++ ++P+ I+FRALG +DEDIL HICYD D+Q
Sbjct: 181 LTMKLYGKGDSARGGFGQTIQATLPFVKADLPVAIVFRALGVVSDEDILNHICYDRNDSQ 240
Query: 274 MMELLRPSLEEAFFIQNQQ----YIGKRG----ATVGVTREKMIKYAKEILQKEMLPHVG 325
M+E+LRP +EEAF +Q+++ +IGKRG A++G REK ++ AK+ILQKE LPH+
Sbjct: 241 MLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQASLG--REKRVRVAKDILQKETLPHIS 298
Query: 326 TGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLT 385
+ ET+KA++ G+++H+LL CALGRR DDRDH+G KRLDLAGPLL LFR + R++
Sbjct: 299 QSEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLLAKLFRGIIRRIN 358
Query: 386 GDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNC 444
++ +Y+++CV++ ++ NL AIK T++ GLKYSLATGNWG Q AA + AGVSQVLN
Sbjct: 359 TELSNYLKRCVESNRNFNLTVAIKPSTLSNGLKYSLATGNWGDQKKAASSTAGVSQVLNR 418
Query: 445 LTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 496
T+AST ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+
Sbjct: 419 YTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYV 478
Query: 497 TIGSAAYPILEFLEEWGTENFE 518
++GS A P++EF+ G E E
Sbjct: 479 SVGSPAEPLIEFMINRGMEVVE 500
>gi|120561275|gb|ABM27022.1| RNA polymerase II second largest subunit, partial [Neocallimastix
frontalis]
Length = 915
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/366 (61%), Positives = 278/366 (75%), Gaps = 15/366 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+M++N +YVF K P+ Y+Y AE+ S ES +R ST+++ ML++ S +
Sbjct: 1 SEKVLIAQERMASNIIYVFAKTPPSPYSYTAEIRSAVESGSRHASTLYIKMLAKASTRAN 60
Query: 228 SS--GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA 285
S GQ I ATLPY+R +IPI+I+FRALG D DILEHICYDF+D QM+E+L+P +E+A
Sbjct: 61 SEIVGQSIKATLPYVRQDIPIVIVFRALGVVPDRDILEHICYDFRDYQMLEMLKPCIEDA 120
Query: 286 FFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHI 341
F IQ+++ +IGKRG TVGVT+EK I+YA EILQKE+LPH+GT ETKKAY+FG++
Sbjct: 121 FVIQDKEIALDFIGKRGTTVGVTKEKRIRYAAEILQKELLPHIGTRAHTETKKAYFFGYM 180
Query: 342 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD 401
IHRLLL AL RR DDRDH+G KRLDLAGPLLG LFR LFRKLT DV +Q C+D ++
Sbjct: 181 IHRLLLAALERRECDDRDHFGKKRLDLAGPLLGSLFRMLFRKLTKDVSKTLQMCIDRNRE 240
Query: 402 VNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--- 457
NL AI+ TI+ GLKYSLATGNWG Q +RAGVSQVLN T+AST ++
Sbjct: 241 FNLNSAIRPNTISDGLKYSLATGNWGAQSKFMQSRAGVSQVLNRYTFASTLSHLRRLNTP 300
Query: 458 -----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEW 512
KLAKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM Y+++GS++ PI+EFLEEW
Sbjct: 301 IGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYVSVGSSSAPIVEFLEEW 360
Query: 513 GTENFE 518
EN E
Sbjct: 361 TMENME 366
>gi|520511|gb|AAA50226.1| RNA polymerase II, second largest subunit, partial [Crassostrea
gigas]
Length = 859
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 231/362 (63%), Positives = 272/362 (75%), Gaps = 16/362 (4%)
Query: 172 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS--AKGGSS 229
LIAQEKM+TN VYVF+++ +KYA+ E+ S E +RP ST++V M++R AK +
Sbjct: 1 LIAQEKMATNTVYVFQQKD-SKYAFKTEIRSCLEHSSRPTSTLWVNMMARGGGGAKKSAI 59
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
GQ I LPYI+ EIPIII+FRALGF +D DILEHI YDF D +MME+++PSL+EAF IQ
Sbjct: 60 GQRIIGILPYIKQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 119
Query: 290 NQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRL 345
Q +IG RGA GVT+EK IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRL
Sbjct: 120 EQNVALNFIGSRGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 179
Query: 346 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQ 405
LL A+GRR DDRDHYGNKRLDLAGPLL LFR LFR L +VR Y QK +D GKD NL+
Sbjct: 180 LLAAIGRREVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLMKEVRLYAQKFIDRGKDFNLE 239
Query: 406 FAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW------- 457
AIK + IT GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 240 LAIKTRIITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRD 299
Query: 458 -KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
KLA+PRQLHN+QWGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN
Sbjct: 300 GKLARPRQLHNTQWGMICPAETPEGSAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 359
Query: 517 FE 518
E
Sbjct: 360 LE 361
>gi|70952785|ref|XP_745537.1| DNA-directed RNA polymerase II second largest subunit, [Plasmodium
chabaudi chabaudi]
gi|56525891|emb|CAH75446.1| DNA-directed RNA polymerase II second largest subunit, putative
[Plasmodium chabaudi chabaudi]
Length = 727
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/546 (44%), Positives = 356/546 (65%), Gaps = 44/546 (8%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
+ +E++W VI ++F GLV QQ++S+++F + MQEI+DE IEI+P+ Q+ P +
Sbjct: 30 QINEEDSWVVIGSFFGH-GLVNQQIESYNDFIEYRMQEIIDEHPHIEIKPQPQYRPDKDE 88
Query: 75 D--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV---------- 116
+ F ++ L +P E + L+ + ARLRNLTYS+ +Y+D+
Sbjct: 89 NTNIIYSLKFGQLSLDRPFFDEKNLVNKNLWPQEARLRNLTYSSAIYIDIEQSTYMIDET 148
Query: 117 -TKRVIKKGHDGEEV-----PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEK 170
K+++K+ E + P+ML+S +C + ++++GEC D+GGYFI+NG EK
Sbjct: 149 TKKQILKEKFVYERINLGRIPLMLKSMFCWTKGLPENDISDMGECSLDQGGYFIVNGGEK 208
Query: 171 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSG 230
VL+AQE+M+ N +YVFKK+ +K+ ++AE+ S E +++ S V M +++ ++ G SG
Sbjct: 209 VLVAQERMANNFIYVFKKKHSSKFGWIAEIRSQME-KSQATSGFSVKMKTKSGSRSGGSG 267
Query: 231 Q----YIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
+ + ATLPYIRTEI + ILFRALG T+D DIL+ I YDF D M+ ++R +LEE
Sbjct: 268 RSSGGLLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKMMINIMRETLEECI 327
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
Q YIGKRG TVG +R+K I YAKE+L+KE+LPH+GTG E+KK+Y+ G++I
Sbjct: 328 DYPTQDICLDYIGKRGPTVGASRDKRILYAKELLRKEVLPHMGTGAGVESKKSYFIGYMI 387
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
+RLLL LGR EDDRDH+G KRLD+AGPL+ F T FRK+ DVR +Q+ +DN K
Sbjct: 388 NRLLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFATYFRKMAKDVRRVLQRQIDNNKPF 447
Query: 403 NLQFAIKA-KTITGGLKYSLATGNWGQG-NAAGTRAGVSQVLNCLTYASTFTYYLSW--- 457
++ AI++ IT G++Y LATGNWG+ + R GV+QVLN LTY+S ++
Sbjct: 448 DVAGAIRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRLNTP 507
Query: 458 -----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEW 512
K+AKPRQLHN+ WGM+CP ETPEGQ+ GLVKNL+LM I++G++ I EFL EW
Sbjct: 508 LGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIYEFLTEW 567
Query: 513 GTENFE 518
G E+ +
Sbjct: 568 GLESLD 573
>gi|410932093|ref|XP_003979428.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like,
partial [Takifugu rubripes]
Length = 982
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 230/363 (63%), Positives = 272/363 (74%), Gaps = 16/363 (4%)
Query: 171 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGS 228
VLIAQEKM+TN VYVF K+ +KYAY +E S E+ +RP STI+V M++R K +
Sbjct: 1 VLIAQEKMATNTVYVFAKKD-SKYAYTSECRSCLENSSRPTSTIWVSMMARGGQGVKKSA 59
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
GQ I +TLPYIR E+PIII+FRALGF +D DILEHI YDF D +MME+++PSL+EAF I
Sbjct: 60 IGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 119
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
Q Q +IG RGA GVT+E+ IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++HR
Sbjct: 120 QEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHR 179
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L ++R Y QK +D GKD NL
Sbjct: 180 LLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFNL 239
Query: 405 QFAIKAKTITGGLKYSLATGNWGQ-GNAAGTRAGVSQVLNCLTYASTFTYY--------L 455
+ AIK + I+ GLKYSLATGNWG A RAGVSQVLN LT+AST ++
Sbjct: 240 ELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGR 299
Query: 456 SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW E
Sbjct: 300 DGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 359
Query: 516 NFE 518
N E
Sbjct: 360 NLE 362
>gi|520515|gb|AAA50228.1| RNA polymerase II, second largest subunit, partial [Helobdella
stagnalis]
Length = 859
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 231/362 (63%), Positives = 273/362 (75%), Gaps = 16/362 (4%)
Query: 172 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSS 229
LIAQEKM+TN VYVF ++ +KYAY E+ S E +RP T++V M++R T AK
Sbjct: 1 LIAQEKMATNTVYVFSQKD-SKYAYKTELRSCLEHSSRPSGTMWVNMMARSGTGAKKVGI 59
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
GQ I A LPYI+ EIPIII+FRALGF +D DILEHI YDF D +MME+++PS++EAF +Q
Sbjct: 60 GQRIVAVLPYIKQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSIDEAFCVQ 119
Query: 290 NQ----QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRL 345
+Q +IG RG+ GVTREK IKYAKEILQKEMLPHVG DFCET+KAY+ G+++HRL
Sbjct: 120 DQPVALNFIGGRGSRPGVTREKRIKYAKEILQKEMLPHVGISDFCETRKAYFLGYMVHRL 179
Query: 346 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQ 405
LL ALGRR DDRDHYGNKRLDLAGPLL LFR LFR L+ ++R Y QK +D GKD NL+
Sbjct: 180 LLAALGRREVDDRDHYGNKRLDLAGPLLAYLFRGLFRNLSKEIRLYAQKFIDRGKDFNLE 239
Query: 406 FAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW------- 457
AIK +TIT GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 240 LAIKTRTITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRD 299
Query: 458 -KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
KLA+PRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN
Sbjct: 300 GKLARPRQLHNTLWGMICPAETPEGCAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 359
Query: 517 FE 518
E
Sbjct: 360 LE 361
>gi|403284743|ref|XP_003933716.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2, partial [Saimiri boliviensis boliviensis]
Length = 992
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 245/435 (56%), Positives = 305/435 (70%), Gaps = 34/435 (7%)
Query: 25 ISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD-------FA 77
+S+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E+QH G+ + F
Sbjct: 1 LSSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFE 60
Query: 78 EIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIMLRSS 137
+IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G + +
Sbjct: 61 QIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQ-------- 112
Query: 138 YCTLYQNSQKALTELGECP--YDEGGYFIIN--GSEKVLIAQEKMSTNHVYVFKKRQPNK 193
+Q T +G+ P +D + + S+ VLIAQEKM+TN VYVF K+ +K
Sbjct: 113 -------TQHQKTFIGKIPIMFDLLNFMAVTFLMSKXVLIAQEKMATNTVYVFAKKD-SK 164
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHATLPYIRTEIPIIILFR 251
YAY E S E+ +RP STI+V ML+R AK + GQ I ATLPYI+ E+PIII+FR
Sbjct: 165 YAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFR 224
Query: 252 ALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREK 307
ALGF +D DILEHI YDF+D +MME+++PSL+EAF IQ Q +IG RGA GVT+EK
Sbjct: 225 ALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEK 284
Query: 308 MIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLD 367
IKYAKE+LQKEMLPHVG DFCETKKAY+ G+++HRLLL ALGRR DDRDHYGNKRLD
Sbjct: 285 RIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLD 344
Query: 368 LAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG 427
LAGPLL LFR +F+ L +VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG
Sbjct: 345 LAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWG 404
Query: 428 -QGNAAGTRAGVSQV 441
Q A RAGVSQV
Sbjct: 405 DQKKAHQARAGVSQV 419
>gi|83415493|gb|ABC17954.1| RNA polymerase II second largest subunit, partial [Phycomyces
blakesleeanus]
Length = 801
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/364 (60%), Positives = 276/364 (75%), Gaps = 14/364 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+M+TN VYVF K P+ Y AE+ S E ++ S +++ M+ ++ +GG
Sbjct: 1 SEKVLIAQERMATNTVYVFAKAPPSNVQYTAEIRSQPEKGSKNASPLYIKMMRASTDRGG 60
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
+ GQ I ATLPYIR++IPI+I+FRALG AD D+LEHICYD D +M+E+L+PS+EEAF
Sbjct: 61 T-GQCIRATLPYIRSDIPIVIVFRALGQVADRDVLEHICYDRNDYEMLEMLKPSIEEAFV 119
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ+Q +IGKRG TVG TRE+ KYA EILQKE+LPHVGT ET+K+Y+FG++IH
Sbjct: 120 IQDQDVALDFIGKRGTTVGATRERRTKYATEILQKELLPHVGTAYKTETRKSYFFGYMIH 179
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLL AL RR DDRDHYG KR+DLAGPL+ GLFR LF+KLT DV Y+QKC+++ ++ N
Sbjct: 180 RLLLAALERRELDDRDHYGKKRMDLAGPLMAGLFRLLFKKLTKDVAKYLQKCIESSREFN 239
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
L A+K+ TIT GLKYSLATGNWG Q A RAGVSQVLN T+AST ++
Sbjct: 240 LTLAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTPIG 299
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YI++GSAA P++ FLEEW
Sbjct: 300 RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYISVGSAATPLIMFLEEWAM 359
Query: 515 ENFE 518
EN E
Sbjct: 360 ENLE 363
>gi|120561251|gb|ABM27010.1| RNA polymerase II second largest subunit, partial [Basidiobolus
ranarum]
Length = 883
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/364 (60%), Positives = 272/364 (74%), Gaps = 18/364 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+M++N VYVF K P+ Y++ AE+ S+AE ++ S +F+ ML+R G
Sbjct: 1 SEKVLIAQERMASNTVYVFSKTPPSPYSFTAEIRSVAEKGSKNASPLFLKMLAR-----G 55
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SGQYI ATLPYIR ++PI+++FRALG AD DILEHICYD +D M+ELL+P +EEAF
Sbjct: 56 DSGQYIRATLPYIRQDVPIVVVFRALGLVADRDILEHICYDQEDYAMLELLKPCIEEAFV 115
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ Q YIGKRG TVG+ ++K IKYA EILQKE LPHV T ETKKAY+FG+++H
Sbjct: 116 IQEQHVALDYIGKRGTTVGINKDKRIKYATEILQKEFLPHVATEAHTETKKAYFFGYMVH 175
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLL AL RR DDRDHYG KR+DLAGPLL LFR LFRKLT DV Y+QKC+D+ ++ N
Sbjct: 176 RLLLAALERRDLDDRDHYGKKRMDLAGPLLAMLFRMLFRKLTKDVGRYLQKCIDSNREFN 235
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
L A+K+ TIT GLKYSLATGNWG Q A RAGVSQVLN T+AST ++
Sbjct: 236 LTLAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTPIG 295
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM YI++G+ + P++E L +W
Sbjct: 296 RDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYISVGNPSAPVVEVLADWAM 355
Query: 515 ENFE 518
E+ E
Sbjct: 356 ESLE 359
>gi|116201245|ref|XP_001226434.1| hypothetical protein CHGG_08507 [Chaetomium globosum CBS 148.51]
gi|88177025|gb|EAQ84493.1| hypothetical protein CHGG_08507 [Chaetomium globosum CBS 148.51]
Length = 1182
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 243/522 (46%), Positives = 330/522 (63%), Gaps = 49/522 (9%)
Query: 24 VISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSK 83
VI ++F+ KGLV QQ+DSFDEF T+Q +VDE + A + +++
Sbjct: 52 VIQSHFDCKGLVAQQIDSFDEFTSTTIQSLVDEV----------------TKRARVAINE 95
Query: 84 PMMTESDGETATLFLKAARLRNLTYSAPLYV----DVTKRVIKKGHDGEE---------V 130
+ + E ++ AR T AP + + T G GE+ +
Sbjct: 96 EVALKDMDEEQQEYM--AR----TGEAPKTIRWEEEDTGPTEGSGKGGEDKGDLIFLGKL 149
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
P+M++S C L ++L L ECPYD+GGYFIINGSEKVLIAQE+ + N V VFKK
Sbjct: 150 PVMVKSQVCHLAGEDDESLFLLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPP 209
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILF 250
+Y AE+ S E +R S++ + + S+ S + G + TLPY+R ++ + I+F
Sbjct: 210 GGSVSYQAEIRSALEKGSRLISSLQMKLHSKGSPEKGRLANTVSVTLPYVREDVSLGIVF 269
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRG-ATVGVTR 305
RALG +DEDIL HICYD DTQM+E LRP +EEAF IQ+++ +IGKRG G R
Sbjct: 270 RALGIVSDEDILNHICYDRTDTQMLEALRPCIEEAFCIQDREIALDFIGKRGNGNAGQNR 329
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
++ AK++LQKEMLPH+ + CET+KA++ G+++HRLL CALGRR DDRDH+G KR
Sbjct: 330 MNRVRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHRLLQCALGRRDPDDRDHFGKKR 389
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGN 425
LDL GPLL LFR + R++T D+ SY+++C+D K+ +L IK T+T GLKYSLATGN
Sbjct: 390 LDLPGPLLAKLFRNVIRRMTQDLMSYMKRCIDTNKNFSLPLGIKHSTLTNGLKYSLATGN 449
Query: 426 WG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPA 476
WG Q AA + AGVSQVLN T+AST ++ KLAKPRQLHN+ WG++CPA
Sbjct: 450 WGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPA 509
Query: 477 ETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
ETPEGQACGLVKNL+LM Y+++G+ A PI+EF+ G E E
Sbjct: 510 ETPEGQACGLVKNLSLMCYVSVGTPADPIVEFMIARGMEVLE 551
>gi|403224032|dbj|BAM42162.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 1189
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 246/555 (44%), Positives = 355/555 (63%), Gaps = 49/555 (8%)
Query: 3 MEEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI 62
+E + + E E ++E+ W VI ++F E GLV QQ++SF++F MQEI+D IEI
Sbjct: 43 LEPTKYFKGEHEGFSEEDTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDSHPAIEI 102
Query: 63 RPESQHNPGQQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYV 114
P+ + P ++ + F ++ L+KP + E DG ++ + ARLRNLTY++ +Y+
Sbjct: 103 TPQPNYRPEEEEENSVLYRLKFGQLSLNKPSVEEKDGVFKHIWPQEARLRNLTYASQVYI 162
Query: 115 DVTKRVI--KKGHDGE------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEG 160
D+ ++ ++G+ + +P+ML+S+YC ++ L+++GEC +D+G
Sbjct: 163 DIEQQTFLNEEGNLVQTDSTVYPRVPLCRIPMMLKSAYCWTKGLTEHDLSDIGECVFDQG 222
Query: 161 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAE-SQNRPPSTIFVPML 219
GYF++NG E+VLIAQE+M+ N VYVF K+ KY+ VA++ S + SQ +I + L
Sbjct: 223 GYFVVNGGERVLIAQERMANNFVYVFNKKN-QKYSAVAQLRSQPDFSQGVTSFSIMI--L 279
Query: 220 SRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
+ AK + A LPY++ ++P+ ILFRALG +D DIL+ I YDF DTQM+ L+R
Sbjct: 280 NSQLAKNK-----MLAALPYVKGDVPVPILFRALGCISDRDILQRIVYDFSDTQMLSLMR 334
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
+LEE +Q+ YIGKRG TVG E I+YAK++L++ LPHVGT E+KK
Sbjct: 335 STLEECSEYTSQEQCLDYIGKRGPTVGAPLEARIQYAKDLLRRHFLPHVGTEVGSESKKC 394
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
+Y G++IHRLLL LGR EDDR+H+G KRLDLAG L+ F LFRKL DV+ +Q
Sbjct: 395 FYVGYMIHRLLLNQLGRINEDDREHFGKKRLDLAGALMASSFGALFRKLAKDVKKLLQNQ 454
Query: 396 VDNGKDVNLQFAIKAKT-ITGGLKYSLATGNWG---QGNAAGTRAGVSQVLNCLTYASTF 451
+D+G+ ++ AIK+ + IT GL+Y L TGNWG +GN R GVSQVLN LT+AS
Sbjct: 455 IDSGRSFDVAGAIKSCSQITQGLQYQLLTGNWGRDKEGNVV--RTGVSQVLNRLTFASYL 512
Query: 452 TYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAY 503
++ K+AKPRQLHN+ WGM+CPAETPEGQA GLVKNLALM YI++GS
Sbjct: 513 SHLRRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCYISVGSMTS 572
Query: 504 PILEFLEEWGTENFE 518
IL+FL E+G ++ +
Sbjct: 573 TILDFLLEFGMDSLD 587
>gi|520505|gb|AAC83398.1| RNA polymerase II, second largest subunit, partial [Artemia salina]
Length = 862
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 227/362 (62%), Positives = 271/362 (74%), Gaps = 16/362 (4%)
Query: 172 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSS 229
LIAQEKM+TN VYVF + +KY Y E+ S E+ +RP ST++V M+++ + K +
Sbjct: 1 LIAQEKMATNTVYVFALKD-SKYCYKTEIRSCIENSSRPVSTLYVNMMAKGGQNLKKSAI 59
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
GQ I A +PYI+ EIPI+I+FRALGF AD DILEHI Y+F D +MME+++PSL+EAF IQ
Sbjct: 60 GQRIIAIVPYIKQEIPIMIVFRALGFVADRDILEHIIYEFDDPEMMEMVKPSLDEAFVIQ 119
Query: 290 NQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRL 345
Q +IG RGA GVT++K IKYA+EILQKEMLPHVG DFCETKKAY+ G+++HRL
Sbjct: 120 EQNVALNFIGARGARPGVTKDKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRL 179
Query: 346 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQ 405
LL ALGRR DDRDHYGNKRLDLAGPL+ LFR LF+ LT +VR Y QK +D GKD N++
Sbjct: 180 LLAALGRRELDDRDHYGNKRLDLAGPLMSLLFRGLFKTLTKEVRMYAQKFIDRGKDFNIE 239
Query: 406 FAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LS 456
AIK K IT GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 240 LAIKPKFITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRD 299
Query: 457 WKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN
Sbjct: 300 GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 359
Query: 517 FE 518
E
Sbjct: 360 LE 361
>gi|58266096|ref|XP_570204.1| DNA-dependent RNA polymerase II RPB140 [Cryptococcus neoformans
var. neoformans JEC21]
gi|57226437|gb|AAW42897.1| DNA-dependent RNA polymerase II RPB140, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 1193
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 243/560 (43%), Positives = 334/560 (59%), Gaps = 104/560 (18%)
Query: 4 EEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR 63
+EE+ + DE+E +QE+ W VI+++FEEKGLVRQQL+SF+EF +NTMQEIVD+ + + +
Sbjct: 37 DEEKYDVDEDEPISQEDYWTVINSFFEEKGLVRQQLESFNEFIENTMQEIVDDHSRLTLD 96
Query: 64 PESQHN--PGQQS-----DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV 116
+Q+ G ++ F +IYL++ TE DG T LF + ARLRNLTYSAPLYVD+
Sbjct: 97 QFTQYTGVAGDETRRYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDI 156
Query: 117 TKRVIKK---------------GHDGE------------EVPIMLRSSYCTLYQNSQKAL 149
KR + G DGE +VP+M+RS++C L+
Sbjct: 157 KKRTLTASGVDDPVEADWQPAVGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQC 216
Query: 150 TELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNR 209
E+GECPYD+GGYFII+GSEKVLIAQE+M+TNHV+VF K P ++ Y AE+ S E R
Sbjct: 217 HEIGECPYDQGGYFIISGSEKVLIAQERMATNHVFVFLKAAPARFTYFAEINSQKEKGGR 276
Query: 210 PPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDF 269
+ V M +R S G++G I +LPY + +IP++++FRALG D D+L HIC+
Sbjct: 277 VANHTEVRMYARAS---GTTGGVIRVSLPYTKVDIPLVVVFRALGIVPDRDVLSHICFGA 333
Query: 270 QDTQMMELLRPSLEEAFFIQNQ----QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVG 325
+D ++E+L+PS+EE+F +Q++ +IG+RG R + + A +IL KE LPHV
Sbjct: 334 EDEALLEMLQPSIEESFAVQDRDTALDFIGRRGQHEKAPRAQRQRAAFDILHKEFLPHVS 393
Query: 326 TGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLT 385
T + E+KKAY+ G++
Sbjct: 394 TAEGFESKKAYFLGYM-------------------------------------------- 409
Query: 386 GDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCL 445
CV+ K+ L AI+ TIT GLKY+LATGNWG+ + TRAGVSQVLN
Sbjct: 410 ---------CVEQNKEFALNMAIRPNTITDGLKYALATGNWGKRD--NTRAGVSQVLNRY 458
Query: 446 TYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 497
T+AST ++ K AKPRQLHN+ WGM+CPAETPEG ACGLVKNLALM YI+
Sbjct: 459 TFASTLSHLRRTNTPIGRDSKAAKPRQLHNTHWGMVCPAETPEGSACGLVKNLALMSYIS 518
Query: 498 IGSAAYPILEFLEEWGTENF 517
+GS + P++EFLEEWG E+
Sbjct: 519 VGSYSAPVMEFLEEWGLEDL 538
>gi|403331439|gb|EJY64666.1| DNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1198
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 242/562 (43%), Positives = 351/562 (62%), Gaps = 57/562 (10%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ 72
++E Q++AWAVI +YF++ GLV QQ+ SF+ F + +QEIV E I+ E Q+ P +
Sbjct: 21 KKEIDQDDAWAVIRSYFKQHGLVSQQISSFNRFLEMNVQEIVKEHKHNRIKVEPQYLPSE 80
Query: 73 QSD-----------FAEIYLSK-PMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV 120
D F +++++ P + ESD +F AR+RNLTY+ +YVDV +
Sbjct: 81 GRDSTQENIYYDVIFEQVHVNNSPRIQESDESYQAVFPHEARIRNLTYATEIYVDVKLQK 140
Query: 121 I------KKG-HDGEE--------------------VPIMLRSSYCTLYQ-NSQKALTEL 152
+ K G DGE+ VP+M+RS +C L + +
Sbjct: 141 LQQIPYDKTGLRDGEKREPKFTILEDSKPIQTFLGKVPVMVRSKFCHLRNLQDHEIVRNA 200
Query: 153 GECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPS 212
EC YD+GGYF+ING EKV+IAQE+M+ N V VF +R P+KY++VAE+ S AE+ N+PP
Sbjct: 201 KECLYDQGGYFVINGGEKVIIAQERMANNIVLVFHRRPPSKYSWVAEIRSQAENSNKPPQ 260
Query: 213 TIFVPMLSRTS---AKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDF 269
V + + GG+ + I AT+P IR IP+ IL RALG +D+ I+ ICYD
Sbjct: 261 QFMVAIQEKIKLGEQGGGNYARTICATIPAIREPIPVAILMRALGCVSDKQIINKICYDP 320
Query: 270 QDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVG 325
+D++M E L+PSLE+A + ++ +I KRG+ +R+ I+YA++IL+ E LPHV
Sbjct: 321 EDSEMCESLKPSLEQAMTVMTEEDALDFISKRGSGAQYSRDTRIQYAQKILETEFLPHVS 380
Query: 326 TGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLT 385
KK+Y+ G++++RL+ +LGR +EDDRD+YG KR+D+AG LL GLFR LFR+ T
Sbjct: 381 MNAEGLYKKSYFVGYMVNRLIQASLGRTSEDDRDYYGKKRMDMAGSLLSGLFRQLFRQTT 440
Query: 386 GDVRSYVQKCVDNGKDV-NLQFAIKAKTITGGLKYSLATGNWGQGNAAGT-RAGVSQVLN 443
D+ Y+++ +DNGK + +L AIK+ TI+ GLK +LATGNWG+ + GV+QVLN
Sbjct: 441 DDMLKYLKRDIDNGKQILSLASAIKSDTISRGLKSALATGNWGKDKQGDVQKTGVAQVLN 500
Query: 444 CLTYASTFTYYL--------SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY 495
LT+AS+ ++ S KL KPRQLHNS WGM+CPAETPEGQACGLVKNL+LM
Sbjct: 501 RLTFASSLSHLRRLNTPLAKSGKLTKPRQLHNSHWGMVCPAETPEGQACGLVKNLSLMSL 560
Query: 496 ITIGSAAYPILEFLEEWGTENF 517
+++GS ++E LE++G E+
Sbjct: 561 VSVGSPNKTLIEILEDFGVEDL 582
>gi|321257963|ref|XP_003193762.1| DNA-dependent RNA polymerase II RPB140 [Cryptococcus gattii WM276]
gi|317460232|gb|ADV21975.1| DNA-dependent RNA polymerase II RPB140, putative [Cryptococcus
gattii WM276]
Length = 1193
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 240/560 (42%), Positives = 334/560 (59%), Gaps = 104/560 (18%)
Query: 4 EEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR 63
+EE+ + D++E +QE+ W VI+++FEEKGLVRQQL+SF+EF +NTMQEIVD+ + + +
Sbjct: 37 DEEKYDVDDDEPISQEDYWTVINSFFEEKGLVRQQLESFNEFIENTMQEIVDDHSRLTLD 96
Query: 64 PESQHN--PGQQS-----DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV 116
+Q+ G ++ F +IYL++ TE DG T LF + ARLRNLTYSAPLYVD+
Sbjct: 97 QFTQYTGVAGDETRRYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDI 156
Query: 117 TKRVIKK---------------GHDGE------------EVPIMLRSSYCTLYQNSQKAL 149
KR + G DGE +VP+M+RS++C L+
Sbjct: 157 KKRTLTASGVDDPVEADWQPAVGDDGEVESAEEEKTSIGKVPVMVRSNFCLLHGLPDDQC 216
Query: 150 TELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNR 209
E+GECPYD+GGYFII+GSEKVLIAQE+M+TNHV+VF K P ++ Y AE+ S E R
Sbjct: 217 HEIGECPYDQGGYFIISGSEKVLIAQERMATNHVFVFLKAAPARFTYFAEINSQKEKGGR 276
Query: 210 PPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDF 269
+ V M +R S G++G I +LPY + +IP++++FRALG D D+L H+C+
Sbjct: 277 VANHTEVRMYARAS---GTTGGVIRVSLPYTKVDIPLVVVFRALGIVPDRDVLSHVCFGA 333
Query: 270 QDTQMMELLRPSLEEAFFIQNQ----QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVG 325
+D ++E+L+PS+EE+F +Q++ +IG+RG R + + A +IL KE LPHV
Sbjct: 334 EDEALLEMLQPSIEESFAVQDRDTALDFIGRRGQHEKAPRAQRQRAAFDILHKEFLPHVS 393
Query: 326 TGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLT 385
T + E+KKAY+ G++
Sbjct: 394 TAEGFESKKAYFLGYM-------------------------------------------- 409
Query: 386 GDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCL 445
CV+ K+ L AI+ T+T GLKY+LATGNWG+ + TRAGVSQVLN
Sbjct: 410 ---------CVEQNKEFALNMAIRPNTVTDGLKYALATGNWGKRD--NTRAGVSQVLNRY 458
Query: 446 TYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 497
T+AST ++ K AKPRQLHN+ WGM+CPAETPEG ACGLVKNLALM YI+
Sbjct: 459 TFASTLSHLRRTNTPIGRDSKAAKPRQLHNTHWGMVCPAETPEGSACGLVKNLALMSYIS 518
Query: 498 IGSAAYPILEFLEEWGTENF 517
+GS + P++EFLEEWG E+
Sbjct: 519 VGSYSAPVMEFLEEWGLEDL 538
>gi|71028664|ref|XP_763975.1| DNA-directed RNA polymerase II subunit [Theileria parva strain
Muguga]
gi|68350929|gb|EAN31692.1| DNA-directed RNA polymerase II subunit, putative [Theileria parva]
Length = 1190
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 244/542 (45%), Positives = 341/542 (62%), Gaps = 57/542 (10%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ 72
+E T+E+ W VI ++F E GLV QQ++SF++F MQEI+D IEI P+ + P +
Sbjct: 53 DENFTEEDTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDAHPPIEITPQPNYRPEE 112
Query: 73 QSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKG 124
+ + F ++ L+KP + E DG ++ + ARLRNLTY++ +Y+D+ +
Sbjct: 113 EEENSILYRLKFGQLSLNKPSVEEKDGVFKHIWPQEARLRNLTYASQVYIDIEQETFVN- 171
Query: 125 HDGEEV---------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSE 169
+G+ V P+M +SSYC + + L+++GEC +D+GGYF++NG E
Sbjct: 172 ENGKLVQTDSTVYPRVPLCRMPMMHKSSYCWTRGLNDRDLSDIGECVFDQGGYFVVNGGE 231
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAE-SQNRPPSTIFVPMLSRTSAKGGS 228
+VLIAQE+M+ N VYVF K+ +KY+ VA++ S + Q TI + T K
Sbjct: 232 RVLIAQERMANNFVYVFNKKN-SKYSAVAQLRSQPDFIQGVTSLTIMISNSQLTKNK--- 287
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
+ A LPYIR++IP+ ILFRALG +D DIL+ I YDF DTQM+ L+R SLEE
Sbjct: 288 ----MVAVLPYIRSDIPVPILFRALGCISDRDILQRIVYDFSDTQMLSLMRASLEEC--- 340
Query: 289 QNQQYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLC 348
KRG TVG E+ + +AKE L++ LPHVGT E+KK +Y G++IHRLLL
Sbjct: 341 -------KRGPTVGALHEERLNFAKETLRRHFLPHVGTEVGSESKKCFYLGYMIHRLLLN 393
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAI 408
LGR EDDR+H+G KRLDLAG L+ F TLFRKL DV +++ +D+G+ ++ AI
Sbjct: 394 QLGRINEDDREHFGKKRLDLAGSLMASSFGTLFRKLAKDVERFLKNQIDSGRSFDVAGAI 453
Query: 409 KAKT-ITGGLKYSLATGNWGQ---GNAAGTRAGVSQVLNCLTYASTFTYYLSW------- 457
K+ + IT GL+Y L TGNWG+ GN R GVSQVLN LT+AS ++
Sbjct: 454 KSCSQITQGLQYQLLTGNWGRDKDGNVV--RTGVSQVLNRLTFASYLSHLRRLNTPLGRE 511
Query: 458 -KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
K+AKPRQLHN+ WGM+CPAETPEGQA GLVKNLALM YI++GS + IL+FL E+G ++
Sbjct: 512 GKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCYISVGSLSSTILDFLLEFGMDS 571
Query: 517 FE 518
+
Sbjct: 572 LD 573
>gi|340939429|gb|EGS20051.1| RNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1286
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 256/589 (43%), Positives = 342/589 (58%), Gaps = 98/589 (16%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS-- 74
T E+ W VISAYF++ GLV QQ+DSF+EF Q+T+Q +V+E A + + NPG
Sbjct: 44 TPEDCWEVISAYFDKNGLVSQQIDSFNEFTQSTIQSLVNEYAHLTL---DHPNPGDDEGR 100
Query: 75 ---------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGH 125
F ++ LSKP +TE+ GET L R RNLTYSAP+Y VTKR +
Sbjct: 101 DIAMRRYDIHFQDVLLSKPTLTETTGETTFLLPYECRDRNLTYSAPMYCKVTKRA--RIA 158
Query: 126 DGEEVPIMLRSSYCTLYQNSQKALTELGECPY---------------------------- 157
E +P Y L ++ L + GE P
Sbjct: 159 INEPIP------YHELDDEQREHLAKTGEHPTTIRWEEEDTGPREAPRDGPLKGDKDKAD 212
Query: 158 ---------------------DEGGYFIIN-------------GSEKVLIAQEKMSTNHV 183
D+ F++N GSEKVLIAQE+ + N V
Sbjct: 213 YIFLGKLPIMVKSKVCHLYGEDDDSLFLLNECPYDQGGYFIINGSEKVLIAQERSAANIV 272
Query: 184 YVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTE 243
+FKK AYVAE+ S E +R S++ + + ++ S + G + TLPY+R +
Sbjct: 273 QIFKKPPGGSVAYVAEIRSALEKGSRLISSLQMKLHTKASPEKGRLANTVSVTLPYVRED 332
Query: 244 IPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRG- 298
I + I+FRALG +DEDIL HICYD DTQM+E LRP +EEAF IQ+++ +IGKRG
Sbjct: 333 ISLAIVFRALGVVSDEDILNHICYDRTDTQMLEALRPCIEEAFCIQDREVALDFIGKRGN 392
Query: 299 ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDR 358
G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+LL CALGRR DDR
Sbjct: 393 GNAGQNRVNRIRAAKDLLQKEMLPHISQSEGCETRKAFFLGYMVHKLLQCALGRRDPDDR 452
Query: 359 DHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLK 418
DH+G KRLDLAGPLL LFR + R++T D+ SY+++C+D K+ +L IK T+T LK
Sbjct: 453 DHFGKKRLDLAGPLLAKLFRGVIRRMTQDLMSYMKRCIDTNKNFSLALGIKHSTLTNALK 512
Query: 419 YSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQ 469
YSLATGNWG Q A + AGVSQVLN T+AST ++ KLAKPRQLHN+
Sbjct: 513 YSLATGNWGEQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTH 572
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
WG++CPAETPEGQACGLVKNL+LM Y+++G+ A PI+EF+ E E
Sbjct: 573 WGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIIEFMIARNMEVLE 621
>gi|45545349|gb|AAS67522.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Taphrina deformans]
Length = 936
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 209/364 (57%), Positives = 277/364 (76%), Gaps = 16/364 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKV+IAQE+ + N V VF+K P+ +Y+AE+ S E ++ S++ + + +AK G
Sbjct: 1 SEKVIIAQERSAANMVQVFRKAPPSPVSYLAEIRSAIEKGSKLISSMQIKL---KAAKVG 57
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
S+GQ I ATLPY++T+IPI+I+FRALG D DIL+HICYD +D QM+E+L+P +EEAF
Sbjct: 58 STGQTIAATLPYVKTDIPIVIVFRALGVVPDRDILDHICYDAKDRQMLEMLKPCIEEAFV 117
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ+++ +IGKRG+ +GVT+EK ++YA++ILQKEMLPH+ T + ET+KA++ G+++H
Sbjct: 118 IQDREVALDFIGKRGSAIGVTKEKRLRYAQDILQKEMLPHITTSEGFETRKAFFLGYMVH 177
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCAL RR DDRDH+G KR+DLAGPLL GLFR LF++LT D+R Y+ KCVD+GK+ N
Sbjct: 178 RLLLCALERRDPDDRDHFGKKRIDLAGPLLAGLFRMLFKRLTKDIRQYMTKCVDSGKEFN 237
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
L A+K TIT GL+YSLATG WG Q R GVSQVLN TYAST ++
Sbjct: 238 LPLAVKHTTITNGLRYSLATGTWGDQKKQMNARVGVSQVLNRYTYASTLSHLRRTNTPIG 297
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM Y+++GSA+ PI+EFLEEWG
Sbjct: 298 RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYVSVGSASAPIIEFLEEWGM 357
Query: 515 ENFE 518
E+ E
Sbjct: 358 ESLE 361
>gi|45545331|gb|AAS67513.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Hydnum repandum]
Length = 887
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/364 (58%), Positives = 271/364 (74%), Gaps = 13/364 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+M+ NHVYVF K QP+ +++AEV S E + ST+ V M R K
Sbjct: 1 SEKVLIAQERMAANHVYVFAKAQPSPISFLAEVRSAVEKGGKTISTMQVKMFHRNPQKTV 60
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
S G I A+LPYIR +IPI ++FRALG T+D DILEHICYD DTQM+E+L+P ++E F
Sbjct: 61 SLGNVIRASLPYIRDDIPIWVVFRALGITSDRDILEHICYDTNDTQMVEMLKPCIDEGFV 120
Query: 288 IQNQQY----IGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ ++ IGKRG T G++++K ++YA+EILQKEMLPHV G+ E+KKA++FG++IH
Sbjct: 121 IQEREVALDLIGKRGTTTGLSKDKRLRYAQEILQKEMLPHVSMGEGSESKKAFFFGYMIH 180
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLL AL RR DDRDH+G KRLDLAGPLL LFR LFRKLT DV ++QKCV+ KD N
Sbjct: 181 RLLLAALERRELDDRDHFGKKRLDLAGPLLASLFRMLFRKLTKDVYRHLQKCVETHKDFN 240
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
+ A+K+ TIT GLKYSLATGNWG Q + ++AGVSQVLN T+AST ++
Sbjct: 241 ISIAVKSNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTFASTLSHLRRCNTPLG 300
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM I++GS + P++EFL+EWG
Sbjct: 301 RDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLQEWGL 360
Query: 515 ENFE 518
E+ E
Sbjct: 361 ESLE 364
>gi|84996571|ref|XP_953007.1| DNA-directed RNA polymerase II subunit [Theileria annulata strain
Ankara]
gi|65304003|emb|CAI76382.1| DNA-directed RNA polymerase II subunit, putative [Theileria
annulata]
Length = 1223
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 245/565 (43%), Positives = 350/565 (61%), Gaps = 68/565 (12%)
Query: 12 EEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPG 71
++E T+E+ W VI ++F E GLV QQ++SF++F MQEI+D IEI P+ + P
Sbjct: 52 DDENFTEEDTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDSHPPIEITPQPNYRPE 111
Query: 72 QQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKK 123
++ + F ++ LSKP + E DG ++ + ARLRNLTY++ +Y+D+ +
Sbjct: 112 EEVENSVVYKLKFGQLSLSKPSVEEKDGVFKHIWPQEARLRNLTYASQVYIDIEQETYIN 171
Query: 124 GHDGE---------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGS 168
DG+ +P+M +SSYC + + L+++GEC +D+GGYF++NG
Sbjct: 172 -EDGKLTQTDSTVYPRVPLCRMPMMHKSSYCWTRGLNDQDLSDIGECVFDQGGYFVVNGG 230
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGS 228
E+VLIAQE+M+ N VYVF K+ +KY+ VA++ +++P V L+ +
Sbjct: 231 ERVLIAQERMANNFVYVFNKKN-SKYSAVAQL------RSQPDFIQGVTSLTIMISNSQL 283
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
+ + A LPYIR++IP+ ILFRALG +D DIL+ I YDF DTQM+ L+R SLEE
Sbjct: 284 TKNKMVAVLPYIRSDIPVPILFRALGCISDRDILQRIVYDFSDTQMLSLMRSSLEECSEY 343
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
+Q+ +IGKRG TVG +E+ + +AKE L++ LPHVGT E+KK +Y G++IHR
Sbjct: 344 TSQEQCLDFIGKRGPTVGALQEERLNFAKETLRRHFLPHVGTEVGSESKKCFYLGYMIHR 403
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LLL LGR EDDR+H+G KRLDLAG L+ F TLFRKL DV +++ +D+G+ ++
Sbjct: 404 LLLNQLGRINEDDREHFGKKRLDLAGSLMASSFGTLFRKLAKDVERFLKNQIDSGRSFDV 463
Query: 405 QFAIKAKT-ITGGLKYSLATG-------------------NWGQ---GNAAGTRAGVSQV 441
AIK+ + IT GL+Y L TG NWG+ GN R GVSQV
Sbjct: 464 AGAIKSCSQITQGLQYQLLTGTHSKIIKIKFILLKKFTIWNWGRDKDGNVV--RTGVSQV 521
Query: 442 LNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 493
LN LT+AS ++ K+AKPRQLHN+ WGM+CPAETPEGQA GLVKNLALM
Sbjct: 522 LNRLTFASYLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALM 581
Query: 494 VYITIGSAAYPILEFLEEWGTENFE 518
YI++GS + IL+FL E+G ++ +
Sbjct: 582 CYISVGSLSSTILDFLLEFGMDSLD 606
>gi|384096572|gb|AFH66782.1| RNA polymerase II second largest subunit, partial [Rhizidium
endosporangiatum]
Length = 911
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/364 (59%), Positives = 267/364 (73%), Gaps = 14/364 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+M+TNHVYVF K QP Y++ E+ S+AE ++ ST+F+ M+ K
Sbjct: 1 SEKVLIAQERMATNHVYVFAKAQPATYSFSCEIRSLAERGSKVASTLFIKMMHAKGEKA- 59
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
+ GQ I +LPYI+T++PI I+FRALG AD++I+E ICYDF D M+ELLRP +EEAF
Sbjct: 60 AGGQVIRTSLPYIKTDVPIFIVFRALGVVADQEIMEKICYDFNDHPMLELLRPCIEEAFV 119
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ+Q+ +IG RG T+GV++EK IKYA++ILQKEMLPHVGT ET+KAY+FG++IH
Sbjct: 120 IQSQEVALTWIGNRGNTIGVSQEKRIKYAQDILQKEMLPHVGTKAHTETRKAYFFGYMIH 179
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLL AL RR DDRDH+G KRLDLAG LL GLFR LFRKLT DV +QKC++ ++ N
Sbjct: 180 RLLLAALERREFDDRDHFGKKRLDLAGALLSGLFRMLFRKLTKDVSRTLQKCMETNRNFN 239
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW----- 457
++ A+ A I GLKYSLATGNWG Q A RAGV QVLN T+AST ++
Sbjct: 240 IKTAVDANIIKNGLKYSLATGNWGEQSKAMQARAGVGQVLNRYTFASTLSHLRRMNTPIG 299
Query: 458 ---KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
KLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM IT+G P +EFLEEW
Sbjct: 300 REGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAVITVGCPTLPFVEFLEEWTM 359
Query: 515 ENFE 518
EN E
Sbjct: 360 ENLE 363
>gi|45545345|gb|AAS67520.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Pneumocystis carinii]
Length = 898
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 209/364 (57%), Positives = 270/364 (74%), Gaps = 15/364 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKV+IAQE+ + N V VFKK P+ +YVAE+ S E ++ S + ++S++ KG
Sbjct: 1 SEKVIIAQERSAANTVQVFKKPAPSAVSYVAEIRSAIEKSSKLMSNFQIKLMSKSIEKG- 59
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
+GQ I A LPYIR +IPI+I+FRALG D DI+EHICYD D QM+E+L+P +EEAF
Sbjct: 60 -AGQTIRACLPYIRNDIPIVIVFRALGVVPDRDIMEHICYDPNDHQMLEMLKPCIEEAFV 118
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ ++ +IGKRG+ VG+ REK ++YA++ILQKE+LPH+ T + ET+KA++ G++IH
Sbjct: 119 IQEREVALDFIGKRGSAVGINREKRLRYAQDILQKELLPHITTTEGYETRKAFFLGYMIH 178
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCAL RR DDRDH+G KRLDLAGPLL LFR LF+KLT DV Y+QKCV+ ++ N
Sbjct: 179 RLLLCALERRDPDDRDHFGKKRLDLAGPLLANLFRMLFKKLTKDVYKYMQKCVETNREFN 238
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
L A+K+ TIT GL+YSLATGNWG Q R GVSQVLN T+AST ++
Sbjct: 239 LTLAVKSNTITHGLRYSLATGNWGDQKKIMSARVGVSQVLNRYTFASTLSHLRRTNTPIG 298
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++GSA+ PI+EFLEEWG
Sbjct: 299 RDGKVAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSYVSVGSASAPIIEFLEEWGM 358
Query: 515 ENFE 518
EN E
Sbjct: 359 ENLE 362
>gi|45545301|gb|AAS67498.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Amanita phalloides]
Length = 917
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 212/364 (58%), Positives = 267/364 (73%), Gaps = 15/364 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+M+TNHVYVF K QP+ ++AE+ S E + S V M R +
Sbjct: 1 SEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQER-- 58
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
S G I AT+PYI+ ++PI ++FRALG +D DILEHICYD QD QM+E+L+P +++ F
Sbjct: 59 SLGNVIKATIPYIKVDVPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFV 118
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ+++ +IG RG T G++RE+ I+YA+EILQKEMLPHV + E+KKAY+FG++IH
Sbjct: 119 IQDREVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMSEGSESKKAYFFGYMIH 178
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLL+ AL RR DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y+ KCV+ K+ N
Sbjct: 179 RLLVAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLSKCVETHKEFN 238
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW----- 457
L A+K +TIT GLKYSLATGNWG Q + T+AGVSQVLN TYAST ++
Sbjct: 239 LALAVKHQTITNGLKYSLATGNWGDQKKSMSTKAGVSQVLNRYTYASTLSHLRRCNTPLG 298
Query: 458 ---KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM I++GS + P++EFLEEWG
Sbjct: 299 REGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGL 358
Query: 515 ENFE 518
E+ E
Sbjct: 359 ESLE 362
>gi|120561257|gb|ABM27013.1| RNA polymerase II second largest subunit, partial [Gigaspora
gigantea]
Length = 894
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/355 (57%), Positives = 269/355 (75%), Gaps = 14/355 (3%)
Query: 176 EKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHA 235
E+M+TN VYVF K P+ Y+Y AE+ S E ++ S++ V ML++T+ KG S+GQ+I A
Sbjct: 1 ERMATNTVYVFAKSPPSPYSYTAEIRSAMEKGSKLASSLTVKMLAKTAEKG-STGQFIQA 59
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
T+PYI+ ++P++I FRALG +D+D L+++CYD D QMME L+P +EEAF +Q+ +
Sbjct: 60 TMPYIKKDVPVVIAFRALGAVSDQDFLQYVCYDPNDNQMMEALKPCIEEAFAVQSTEVAA 119
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG+RG T G TR+K IKYAKEILQKE+LPHV T CE +KA++ G+++HRLLL ALG
Sbjct: 120 DWIGRRGTTTGATRDKRIKYAKEILQKELLPHVSTEYGCEKRKAFFLGYMVHRLLLAALG 179
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYG KR+DLAGPLL LFR LF+KLT D+ Y++KC+D ++ NL AIKA+
Sbjct: 180 RRELDDRDHYGKKRMDLAGPLLASLFRMLFKKLTKDISIYLRKCIDTSREFNLHLAIKAQ 239
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
TIT GLKYSLATGNWG Q A +RAGVSQVLN T+AST ++ K+AKP
Sbjct: 240 TITNGLKYSLATGNWGDQKKAMQSRAGVSQVLNRYTFASTLSHLRRCNTPMGRDGKIAKP 299
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
RQLHN+ WGM+CPAETPEGQACGLVKNL+LM YI++GS++ PI++FLEE+G N
Sbjct: 300 RQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYISVGSSSKPIVDFLEEYGMINL 354
>gi|270304862|gb|ACZ71370.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270304897|gb|ACZ71387.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270304921|gb|ACZ71399.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270304946|gb|ACZ71411.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270304950|gb|ACZ71413.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270304958|gb|ACZ71417.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270304970|gb|ACZ71423.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
gi|270305026|gb|ACZ71451.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
gi|270305030|gb|ACZ71453.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270305034|gb|ACZ71455.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270305036|gb|ACZ71456.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270305042|gb|ACZ71459.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
Length = 254
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 204/246 (82%), Positives = 222/246 (90%), Gaps = 4/246 (1%)
Query: 212 STIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQD 271
S++FV MLSR AKGGSSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF D
Sbjct: 1 SSMFVXMLSRAGAKGGSSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFND 60
Query: 272 TQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTG 327
T MMELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G
Sbjct: 61 TSMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVG 120
Query: 328 DFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGD 387
+FCETKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT D
Sbjct: 121 EFCETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKD 180
Query: 388 VRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTY 447
VR Y+QKCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTY
Sbjct: 181 VRGYLQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTY 240
Query: 448 ASTFTY 453
AST ++
Sbjct: 241 ASTLSH 246
>gi|40388703|gb|AAR85529.1| RNA polymerase II [Botryotinia fuckeliana]
Length = 952
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 273/372 (73%), Gaps = 13/372 (3%)
Query: 160 GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPML 219
GGYFIINGSEKVLIAQE+ + N V VFKK + +Y+AE+ S E +R S++ + +
Sbjct: 1 GGYFIINGSEKVLIAQERSAANIVQVFKKPANSAVSYLAEIRSALEKGSRLISSLQIKLY 60
Query: 220 SRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR 279
+ + G G+ + +TLPYI+ +IPI I+FRALG +DEDIL HICYD DTQM+E+L+
Sbjct: 61 DKGDSNRGGFGKTVKSTLPYIKADIPIAIVFRALGVVSDEDILNHICYDRNDTQMLEMLK 120
Query: 280 PSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
P +EEAF IQ+++ +IGKRG +TR+K IKYA++I+QKE+LPH+ + ET+KA
Sbjct: 121 PCIEEAFVIQDREVALDFIGKRGNGTSLTRDKRIKYARDIMQKELLPHISQKEGSETRKA 180
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
++ G+++H+LL CALGRR DDRDH+G KRLDLAGPLL LFR LFR+LT DV Y+Q+C
Sbjct: 181 FFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRNLFRRLTTDVYRYLQRC 240
Query: 396 VDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY 454
V+N ++ NL +K+ TIT GLKYSLATGNWG Q AA + AGVSQVLN T+AST ++
Sbjct: 241 VENNREFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHL 300
Query: 455 --------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM Y+T+G+ + PI+
Sbjct: 301 RRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIV 360
Query: 507 EFLEEWGTENFE 518
EF+ + E E
Sbjct: 361 EFMIQRNMEVLE 372
>gi|6606089|gb|AAF19057.1|AF107785_1 DNA-dependent RNA polymerase II RPB140 [Agaricus bisporus]
Length = 914
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/364 (57%), Positives = 264/364 (72%), Gaps = 18/364 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+M+TNHVYVF K QP+ ++AE+ S E + S V M R +
Sbjct: 1 SEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQERSV 60
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
S T+PYI+ +IPI ++FR LG +D DILEHICYD QD QM+E+L+P +++ F
Sbjct: 61 S-----FTTIPYIKVDIPIWVVFRGLGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFV 115
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ+++ +IG RG T G++RE+ I+YA+EILQKEMLPHV + E+KKAY+FG++IH
Sbjct: 116 IQDREVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIH 175
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLL AL RR DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ N
Sbjct: 176 RLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFN 235
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW----- 457
L A+K +TIT GLKYSLATGNWG Q + ++AGVSQVLN TYAST ++
Sbjct: 236 LALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLG 295
Query: 458 ---KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM I++GS + P++EFLEEWG
Sbjct: 296 REGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGL 355
Query: 515 ENFE 518
E+ E
Sbjct: 356 ESLE 359
>gi|403336158|gb|EJY67267.1| DNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1239
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 235/572 (41%), Positives = 341/572 (59%), Gaps = 65/572 (11%)
Query: 12 EEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI--RPESQHN 69
++ E Q++AW VI +YF++ GLV QQ+ SFD F ++QEI+ E+ ++I P+ Q N
Sbjct: 42 DQNEINQDDAWTVIRSYFKQHGLVSQQISSFDRFVNFSLQEIISENGQLQIPYTPQYQLN 101
Query: 70 PGQQSDFAEIYL----------SKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT-- 117
Q +I S P + E D + +F AR+RNLTY+ ++VD+T
Sbjct: 102 KQQHETDKDIVYEVQFKQASVNSYPRLQEEDDTYSPIFPHEARMRNLTYATEVFVDITLS 161
Query: 118 -----KRVIKKGHDGE--------------------EVPIMLRSSYCTLYQ-NSQKALTE 151
K +I G+ ++P+MLRS +C L+ N + + E
Sbjct: 162 KKELDKEMIIDPKTGQRHQKVKQVMQEYDEARVTIGKIPVMLRSKFCQLHSLNQMQRMKE 221
Query: 152 LGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPP 211
+C YD+GGYFIINGSEKV++AQE+M+ N V VF K+ P+KY++VAE+ S AE+ N+PP
Sbjct: 222 GKDCQYDQGGYFIINGSEKVIVAQERMANNQVNVFHKKPPSKYSWVAEIRSQAENSNKPP 281
Query: 212 STIFVPMLSRTSAKGGSSGQYIHAT----------LPYIRTEIPIIILFRALGFTADEDI 261
+ + + SR + G GQ H+T LP I+ +IP++ILFRALG +D I
Sbjct: 282 QQLLLFLKSRYKSSGPGFGQANHSTSKFGQSIYVSLPMIKEQIPLVILFRALGTISDRQI 341
Query: 262 LEHICYDF-QDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEIL 316
L +C+D D +M E LR SLEE+ + Q+ YI KRG+ RE + Y K +L
Sbjct: 342 LSRVCFDCPDDPEMGEALRASLEESKIVDTQEDAMDYIAKRGSAQPYIRENRLTYTKLML 401
Query: 317 QKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 376
+ E LPH+ T KK+++ G+++++LL LGR EDDRD+YG KRLD+AG LL
Sbjct: 402 ESEFLPHISTLPQDMPKKSFFLGYMVNKLLKAFLGRIDEDDRDYYGKKRLDMAGSLLATN 461
Query: 377 FRTLFRKLTGDVRSYVQKCVDNGKD-VNLQFAIKAKTITGGLKYSLATGNWGQG-NAAGT 434
FR LFR T +R ++ +D+GK+ + LQ +IK IT GL+ +LATGNWG+ N
Sbjct: 462 FRQLFRNFTDTMRRILKHEIDSGKEQIVLQNSIKQDIITRGLRTALATGNWGRDKNGDVQ 521
Query: 435 RAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLHNSQWGMMCPAETPEGQACGL 486
+ GV+QVLN LT+AS+ ++ + KLAKPRQLHN+ WGM+CPAETPEG ACGL
Sbjct: 522 KTGVAQVLNRLTFASSLSHLRRLNTPIAKTGKLAKPRQLHNTHWGMICPAETPEGAACGL 581
Query: 487 VKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
VKNLALM ++++GS ++ LE+ G + +
Sbjct: 582 VKNLALMTFVSVGSQPSYLISILEDLGVDRLD 613
>gi|45545347|gb|AAS67521.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Sphaerophorus globosus]
Length = 903
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/364 (57%), Positives = 269/364 (73%), Gaps = 14/364 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VFKK Q N YVAE+ S E +R S + + + + G
Sbjct: 1 SEKVLIAQERSAANIVQVFKKAQSNT-PYVAEIRSAVERGSRLISGMQIKLYEKGEGSKG 59
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
GQ I TLPYI+TEIPI I+FRALG +DEDIL HICYD +DTQM+E+L+P +EEAF
Sbjct: 60 GFGQTIKCTLPYIKTEIPIAIVFRALGIVSDEDILNHICYDRKDTQMLEMLKPCIEEAFV 119
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ+++ +IGKRG + GVTR+K IKYA++I+QKE+LPH+ + ET+KA++ G+++H
Sbjct: 120 IQDREVALDFIGKRGNSQGVTRDKRIKYARDIMQKELLPHISQSEGTETRKAFFLGYMVH 179
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLL CALGRR DDRDH+G KRLDLAGPLL GLFR LF KLT DV Y+Q+CV+N K+ N
Sbjct: 180 RLLQCALGRREVDDRDHFGKKRLDLAGPLLAGLFRMLFNKLTKDVYKYLQRCVENNKEFN 239
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
L A+K+ T+T GLKYSLATGNWG Q AA ++AGVSQVLN T+AST ++
Sbjct: 240 LTLAVKSTTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIG 299
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YIT+G+ + PI++F+ + G
Sbjct: 300 RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMVQRGM 359
Query: 515 ENFE 518
+ E
Sbjct: 360 DLLE 363
>gi|120561247|gb|ABM27008.1| RNA polymerase II second largest subunit, partial [Furculomyces
boomerangus]
Length = 906
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/363 (57%), Positives = 271/363 (74%), Gaps = 16/363 (4%)
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGS 228
EKV+IAQE+++TN V+VFKK P + Y AE+ S AE ++ S +F+ + ++ +KG
Sbjct: 2 EKVMIAQERIATNTVFVFKKNIPYPH-YTAEIRSAAEKASKQASPLFLKITNKGVSKG-- 58
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
G I A++PYIR++IP++++FRALG A +DILEHICYD D QM+E +PS+EEAF I
Sbjct: 59 LGGEIQASIPYIRSDIPVVVVFRALGMVAVKDILEHICYDGNDHQMLEKFKPSIEEAFVI 118
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
Q++ +IGKRG VGV+++K IKY EILQKE LPHVGT ET+K+++FG+++HR
Sbjct: 119 QDKDVALDFIGKRGTAVGVSKDKRIKYGAEILQKEFLPHVGTQAHNETRKSFFFGYMVHR 178
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LLLCAL RR +DDRDHYG KR+DLAGPLL LFR LFRK+T D+ Y+QKC+D+ ++ NL
Sbjct: 179 LLLCALERREQDDRDHYGKKRMDLAGPLLAMLFRNLFRKVTKDMTRYLQKCIDSKREFNL 238
Query: 405 QFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------L 455
AIK+ TIT GLKYSLATGNWG Q + +R GVSQVLN T+AST ++
Sbjct: 239 TMAIKSNTITAGLKYSLATGNWGDQKKSMQSRTGVSQVLNRYTFASTLSHLRRCNTPIGR 298
Query: 456 SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM +ITIG+ + P+L FLEEW E
Sbjct: 299 DGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMAHITIGAESGPLLLFLEEWAME 358
Query: 516 NFE 518
N E
Sbjct: 359 NLE 361
>gi|55583706|gb|AAV53372.1| RNA polymerase II second largest subunit [Suillus pictus]
Length = 899
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/357 (58%), Positives = 262/357 (73%), Gaps = 15/357 (4%)
Query: 175 QEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIH 234
QE+M+TNHVYVF K QP+ ++AE+ S E + S V M R + S G +
Sbjct: 1 QERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQER--SLGNVMK 58
Query: 235 ATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ-- 292
AT+PYIR +IPI ++FRALG +D DILEHICYD QD QM+E+L+P +++ F IQ+++
Sbjct: 59 ATIPYIRVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVA 118
Query: 293 --YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCAL 350
+IG RG T G++RE+ I+YA+EILQKEMLPHV + E+KKAY+FG++IHRLLL AL
Sbjct: 119 LDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMSEGSESKKAYFFGYMIHRLLLAAL 178
Query: 351 GRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKA 410
RR DDRDH+G KRLDLAGPLL GLFR LF+KLT DV Y+QKCV+ K+ NL A+K
Sbjct: 179 ERRELDDRDHFGKKRLDLAGPLLAGLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKH 238
Query: 411 KTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAK 461
+TIT GLKYSLATGNWG Q A ++AGVSQVLN TYAST ++ K+AK
Sbjct: 239 QTITNGLKYSLATGNWGDQKKAMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAK 298
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PRQLHN+ WGM+CPAETPEGQACGLVKNLALM I++GS + P++EFLEEWG E+ E
Sbjct: 299 PRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLE 355
>gi|270304878|gb|ACZ71378.1| RNA polymerase II second largest subunit [Metzgeria myriopoda]
gi|270304907|gb|ACZ71392.1| RNA polymerase II second largest subunit [Metzgeria myriopoda]
gi|270305002|gb|ACZ71439.1| RNA polymerase II second largest subunit [Metzgeria myriopoda]
gi|270305010|gb|ACZ71443.1| RNA polymerase II second largest subunit [Metzgeria myriopoda]
gi|270305012|gb|ACZ71444.1| RNA polymerase II second largest subunit [Metzgeria myriopoda]
gi|270305016|gb|ACZ71446.1| RNA polymerase II second largest subunit [Metzgeria myriopoda]
gi|270305020|gb|ACZ71448.1| RNA polymerase II second largest subunit [Metzgeria myriopoda]
gi|270305024|gb|ACZ71450.1| RNA polymerase II second largest subunit [Metzgeria myriopoda]
gi|270305080|gb|ACZ71478.1| RNA polymerase II second largest subunit [Metzgeria myriopoda]
Length = 254
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/246 (82%), Positives = 221/246 (89%), Gaps = 4/246 (1%)
Query: 212 STIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQD 271
S++FV MLSR AKGG SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF D
Sbjct: 1 SSMFVXMLSRAGAKGGQSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFND 60
Query: 272 TQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTG 327
T MMELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G
Sbjct: 61 TSMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVG 120
Query: 328 DFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGD 387
+FCETKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT D
Sbjct: 121 EFCETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKD 180
Query: 388 VRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTY 447
VR Y+QKCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTY
Sbjct: 181 VRGYLQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTY 240
Query: 448 ASTFTY 453
AST ++
Sbjct: 241 ASTLSH 246
>gi|520507|gb|AAA50224.1| RNA polymerase II, second largest subunit, partial [Caenorhabditis
elegans]
Length = 859
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 218/362 (60%), Positives = 260/362 (71%), Gaps = 16/362 (4%)
Query: 172 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS-- 229
LIAQEKM+TN VYVF + KYA+ E S E+ +RP ST++V ML+R G +
Sbjct: 1 LIAQEKMATNTVYVFSMKD-GKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAM 59
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
GQ I LPYI+ EIPI+I+FRALGF +D DIL HI YDF D +MME+++PSL+EAF IQ
Sbjct: 60 GQRIIGILPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSLDEAFVIQ 119
Query: 290 NQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRL 345
Q +IG RGA GVTRE+ IKYA+EILQKE+LPHVG + CETKKA++ G+++HRL
Sbjct: 120 EQNVALNFIGARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRL 179
Query: 346 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQ 405
LL ALGRR DDRDH GNKRLDLAGPLL LFR+LFR L ++R QK ++ D L
Sbjct: 180 LLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKNDDFALD 239
Query: 406 FAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LS 456
+K TIT GL YSLATGNWG Q A +RAGVSQVLN LTY +T ++
Sbjct: 240 VCVKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGRE 299
Query: 457 WKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
KLAKPRQLHN+QWGM+CPAETPEGQA GLVKNLALM YI++GS PILEFLEEW EN
Sbjct: 300 GKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMEN 359
Query: 517 FE 518
E
Sbjct: 360 LE 361
>gi|120561255|gb|ABM27012.1| RNA polymerase II second largest subunit, partial [Funneliformis
mosseae]
Length = 883
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 200/355 (56%), Positives = 270/355 (76%), Gaps = 14/355 (3%)
Query: 176 EKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHA 235
E+M+TN VYVF K P+ ++Y AE+ S E ++ S++ + ++++T+ KG ++GQ+I A
Sbjct: 1 ERMATNTVYVFTKSPPSPFSYTAEIRSAMEKGSKLASSLTIKLMAKTAEKG-ATGQFIQA 59
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
T+PYI+ ++P++I FRALG +D+D L+++CYD D QM+E L+P +EEAF +Q+ +
Sbjct: 60 TMPYIKKDVPVVIAFRALGAVSDQDFLQYVCYDPSDHQMLEALKPCIEEAFAVQSMEVAA 119
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG+RG T G TR+K IKYAK+ILQKE+LPHV T CE +KA++ G+++HRLLL ALG
Sbjct: 120 DWIGRRGTTTGATRDKRIKYAKDILQKELLPHVSTEYGCEKRKAFFLGYMVHRLLLAALG 179
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYG KR+DLAGPLL LFR LF+KLT DV Y++KC+D+ ++ NL AIKA+
Sbjct: 180 RRELDDRDHYGKKRMDLAGPLLASLFRMLFKKLTKDVSIYLRKCIDSNREFNLNLAIKAQ 239
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
TIT GLKYSLATGNWG Q A +RAGVSQVLN T+AST ++ K+AKP
Sbjct: 240 TITNGLKYSLATGNWGDQKKAMQSRAGVSQVLNRYTFASTLSHLRRCNTPMGRDGKIAKP 299
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
RQLHN+ WGM+CPAETPEGQACGLVKNL+LM YI++GSA+ PI++FLEE+G N
Sbjct: 300 RQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYISVGSASKPIIDFLEEYGMINL 354
>gi|120561253|gb|ABM27011.1| RNA polymerase II second largest subunit, partial [Funneliformis
mosseae]
Length = 883
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 200/355 (56%), Positives = 270/355 (76%), Gaps = 14/355 (3%)
Query: 176 EKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHA 235
E+M+TN VYVF K P+ ++Y AE+ S E ++ S++ + ++++T+ KG ++GQ+I A
Sbjct: 1 ERMATNTVYVFTKSPPSPFSYTAEIRSAMEKGSKLASSLTIKLMAKTAEKG-ATGQFIQA 59
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
T+PYI+ ++P++I FRALG +D+D L+++CYD D QM+E L+P +EEAF +Q+ +
Sbjct: 60 TMPYIKKDVPVVIAFRALGAVSDQDFLQYVCYDPSDHQMLEALKPCIEEAFAVQSMEVAA 119
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG+RG T G TR+K IKYAK+ILQKE+LPHV T CE +KA++ G+++HRLLL ALG
Sbjct: 120 DWIGRRGTTTGATRDKRIKYAKDILQKELLPHVSTEYGCEKRKAFFLGYMVHRLLLAALG 179
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYG KR+DLAGPLL LFR LF+KLT DV Y++KC+D+ ++ NL AIKA+
Sbjct: 180 RRELDDRDHYGKKRMDLAGPLLASLFRMLFKKLTKDVSIYLRKCIDSNREFNLNLAIKAQ 239
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
TIT GLKYSLATGNWG Q A +RAGVSQVLN T+AST ++ K+AKP
Sbjct: 240 TITNGLKYSLATGNWGDQKKAMQSRAGVSQVLNRYTFASTLSHLRRCNTPMGRDGKIAKP 299
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
RQLHN+ WGM+CPAETPEGQACGLVKNL+LM YI++GSA+ PI++FLEE+G N
Sbjct: 300 RQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYISVGSASKPIIDFLEEYGMINL 354
>gi|343128994|gb|AEL88420.1| RNA polymerase II [Metzgeria claviflora]
Length = 251
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/243 (83%), Positives = 219/243 (90%), Gaps = 4/243 (1%)
Query: 215 FVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQM 274
FV MLSR AKGGSSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT M
Sbjct: 1 FVXMLSRAGAKGGSSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSM 60
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
MELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FC
Sbjct: 61 MELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFC 120
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ETKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR
Sbjct: 121 ETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRG 180
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYAST 450
Y+QKCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST
Sbjct: 181 YLQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYAST 240
Query: 451 FTY 453
++
Sbjct: 241 LSH 243
>gi|120561245|gb|ABM27007.1| RNA polymerase II second largest subunit, partial [Capniomyces
stellatus]
Length = 924
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/368 (57%), Positives = 271/368 (73%), Gaps = 19/368 (5%)
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGS 228
EKVLIAQE+++TN V+VFKK P + Y AE+ S+AE ++ S +F+ L+R A GG
Sbjct: 2 EKVLIAQERIATNTVFVFKKNVPQVH-YTAEIRSVAERASKQASPLFLKKLARGKAGGGG 60
Query: 229 SGQY-----IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLE 283
I AT+PYIR++IP++++FRALG A +DILEHICYD D +++E + S+E
Sbjct: 61 GSGGGSSGGIQATIPYIRSDIPVVVVFRALGMVAAKDILEHICYDGNDNELLEEFKGSIE 120
Query: 284 EAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFG 339
E F IQ+++ +IGKRG TVGV++EK +KYA+EILQKE LPHVGT ET+K Y+FG
Sbjct: 121 EGFVIQDKEVSLDFIGKRGTTVGVSKEKRVKYAREILQKEFLPHVGTQAHNETRKTYFFG 180
Query: 340 HIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNG 399
++IHRLLLC L RR +DDRDHYG KR+DLAGPLL LFR LFRK+T D+ Y+QKC+D+
Sbjct: 181 YMIHRLLLCGLERREQDDRDHYGKKRMDLAGPLLAMLFRNLFRKVTKDMTRYLQKCIDSK 240
Query: 400 KDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY---- 454
++ NL A+K+ TIT GLKYSLATGNWG Q A +R GVSQVLN T+AST ++
Sbjct: 241 REFNLTMAMKSNTITAGLKYSLATGNWGDQKKAMQSRTGVSQVLNRYTFASTLSHLRRCN 300
Query: 455 ----LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLE 510
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM +IT+G+ + PIL FLE
Sbjct: 301 TPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMAHITVGTDSGPILLFLE 360
Query: 511 EWGTENFE 518
EW EN E
Sbjct: 361 EWAMENLE 368
>gi|270304838|gb|ACZ71358.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
gi|270304840|gb|ACZ71359.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
gi|270304899|gb|ACZ71388.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
gi|270304901|gb|ACZ71389.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
gi|270304905|gb|ACZ71391.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
gi|270304909|gb|ACZ71393.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
gi|270304911|gb|ACZ71394.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
gi|270304913|gb|ACZ71395.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
gi|270304915|gb|ACZ71396.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
gi|270304917|gb|ACZ71397.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
gi|270304919|gb|ACZ71398.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
gi|270304982|gb|ACZ71429.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
gi|270304984|gb|ACZ71430.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
gi|270304988|gb|ACZ71432.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
gi|270304990|gb|ACZ71433.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
gi|270304992|gb|ACZ71434.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
gi|270304996|gb|ACZ71436.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
gi|270305070|gb|ACZ71473.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
gi|270305072|gb|ACZ71474.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
gi|270305074|gb|ACZ71475.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
Length = 254
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/246 (82%), Positives = 220/246 (89%), Gaps = 4/246 (1%)
Query: 212 STIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQD 271
S++FV MLSR AKGG SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF D
Sbjct: 1 SSMFVXMLSRAGAKGGQSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFND 60
Query: 272 TQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTG 327
T MMELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G
Sbjct: 61 TSMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVG 120
Query: 328 DFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGD 387
+FCETKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG LFR LFRKLT D
Sbjct: 121 EFCETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRMLFRKLTKD 180
Query: 388 VRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTY 447
VR Y+QKCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTY
Sbjct: 181 VRGYLQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTY 240
Query: 448 ASTFTY 453
AST ++
Sbjct: 241 ASTLSH 246
>gi|6606139|gb|AAF19082.1|AF107810_1 DNA-dependent RNA polymerase II RPB140 [Morchella elata]
Length = 927
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/364 (56%), Positives = 273/364 (75%), Gaps = 14/364 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VFKK P+ YVAE+ S E +R S++ + + S+ A+GG
Sbjct: 1 SEKVLIAQERSAANIVQVFKKALPSPTPYVAEIRSAVEKGSRLISSMQIKLYSKGEARGG 60
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
+ I +TLPYI+++IPI+I+FRALG +DEDIL H+CYD DTQM+E+++P +EEAF
Sbjct: 61 YNAT-IKSTLPYIKSDIPIVIVFRALGVVSDEDILNHVCYDRNDTQMLEMMKPCIEEAFV 119
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ+++ +IGKRG++ G+ +EK I+YA++I+QKE+LPH+ + ET+KA++ G+++H
Sbjct: 120 IQDREVALDFIGKRGSSQGINKEKRIRYARDIMQKELLPHISQSEGSETRKAFFLGYMVH 179
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
R+L CAL RR DDRDH+G KRLDLAGPLL GLFRTL++KLT DV Y++KCV+ GKD N
Sbjct: 180 RMLQCALERREVDDRDHFGKKRLDLAGPLLAGLFRTLWKKLTKDVYKYLEKCVETGKDFN 239
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
L A+K+ TIT GLKYSLATGNWG Q AA ++AGVSQVLN T+AST ++
Sbjct: 240 LTLAVKSNTITNGLKYSLATGNWGEQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIG 299
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM YITIG+ YP+++FL
Sbjct: 300 RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSYITIGTPGYPLVDFLSSNDM 359
Query: 515 ENFE 518
E E
Sbjct: 360 ELLE 363
>gi|343129012|gb|AEL88429.1| RNA polymerase II [Metzgeria agnewiae]
Length = 251
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/243 (83%), Positives = 219/243 (90%), Gaps = 4/243 (1%)
Query: 215 FVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQM 274
FV MLSR AKGGSSGQ+I ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT M
Sbjct: 1 FVKMLSRAGAKGGSSGQFIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSM 60
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
MELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FC
Sbjct: 61 MELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFC 120
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ETKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR
Sbjct: 121 ETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRG 180
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYAST 450
Y+QKCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST
Sbjct: 181 YLQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYAST 240
Query: 451 FTY 453
++
Sbjct: 241 LSH 243
>gi|270305076|gb|ACZ71476.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
Length = 254
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/246 (82%), Positives = 220/246 (89%), Gaps = 4/246 (1%)
Query: 212 STIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQD 271
S++FV MLSR AKGG SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF D
Sbjct: 1 SSMFVXMLSRAGAKGGXSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFND 60
Query: 272 TQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTG 327
T MMELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G
Sbjct: 61 TSMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVG 120
Query: 328 DFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGD 387
+FCETKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG LFR LFRKLT D
Sbjct: 121 EFCETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGXLFRMLFRKLTKD 180
Query: 388 VRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTY 447
VR Y+QKCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTY
Sbjct: 181 VRGYLQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTY 240
Query: 448 ASTFTY 453
AST ++
Sbjct: 241 ASTLSH 246
>gi|55584694|gb|AAV53578.1| RNA polymerase II second largest subunit [Boletellus projectellus]
Length = 899
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/357 (57%), Positives = 262/357 (73%), Gaps = 15/357 (4%)
Query: 175 QEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIH 234
QE+M+TNHVYVF K QP+ ++AE+ S E + S V M R + S G +
Sbjct: 1 QERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQER--SLGNVMK 58
Query: 235 ATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ-- 292
AT+PYIR +IPI ++FRALG +D DILEHICYD QD+QM+E+L+P +++ F IQ+++
Sbjct: 59 ATIPYIRVDIPIWVVFRALGVISDRDILEHICYDMQDSQMLEVLKPCIDDGFVIQDREVA 118
Query: 293 --YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCAL 350
+IG RG T G++RE+ I+YA+EILQKEMLPHV + E+KKAY+FG++IHRLLL AL
Sbjct: 119 LDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAAL 178
Query: 351 GRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKA 410
RR DDRDH+G KRLDLAGPLL LFR LF+KLT DV Y+QKCV+ K+ NL A+K
Sbjct: 179 ERRELDDRDHFGKKRLDLAGPLLANLFRMLFKKLTKDVYRYLQKCVETHKEFNLSLAVKH 238
Query: 411 KTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAK 461
+TIT GLKYSLATGNWG Q + ++AGVSQVLN TYAST ++ K+AK
Sbjct: 239 QTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAK 298
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PRQLHN+ WGM+CPAETPEGQACGLVKNLALM I++GS + P++EFLEEWG E+ E
Sbjct: 299 PRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLE 355
>gi|270305006|gb|ACZ71441.1| RNA polymerase II second largest subunit [Metzgeria myriopoda]
Length = 254
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/246 (82%), Positives = 220/246 (89%), Gaps = 4/246 (1%)
Query: 212 STIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQD 271
S++FV MLS AKGG SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF D
Sbjct: 1 SSMFVXMLSXAGAKGGQSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFND 60
Query: 272 TQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTG 327
T MMELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G
Sbjct: 61 TSMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVG 120
Query: 328 DFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGD 387
+FCETKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT D
Sbjct: 121 EFCETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKD 180
Query: 388 VRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTY 447
VR Y+QKCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTY
Sbjct: 181 VRGYLQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTY 240
Query: 448 ASTFTY 453
AST ++
Sbjct: 241 ASTLSH 246
>gi|343129016|gb|AEL88431.1| RNA polymerase II [Metzgeria violacea]
Length = 251
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/243 (83%), Positives = 219/243 (90%), Gaps = 4/243 (1%)
Query: 215 FVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQM 274
FV MLSR AKGGSSGQ+I ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT M
Sbjct: 1 FVXMLSRAGAKGGSSGQFIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSM 60
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
MELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FC
Sbjct: 61 MELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFC 120
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ETKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR
Sbjct: 121 ETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRG 180
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYAST 450
Y+QKCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST
Sbjct: 181 YLQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYAST 240
Query: 451 FTY 453
++
Sbjct: 241 LSH 243
>gi|343129046|gb|AEL88446.1| RNA polymerase II [Metzgeria frontipilis]
Length = 251
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/243 (83%), Positives = 218/243 (89%), Gaps = 4/243 (1%)
Query: 215 FVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQM 274
FV MLSR AKGG SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT M
Sbjct: 1 FVKMLSRAGAKGGQSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSM 60
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
MELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FC
Sbjct: 61 MELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFC 120
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ETKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR
Sbjct: 121 ETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRG 180
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYAST 450
Y+QKCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST
Sbjct: 181 YLQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYAST 240
Query: 451 FTY 453
++
Sbjct: 241 LSH 243
>gi|343129048|gb|AEL88447.1| RNA polymerase II [Metzgeria frontipilis]
Length = 245
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/243 (83%), Positives = 218/243 (89%), Gaps = 4/243 (1%)
Query: 215 FVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQM 274
FV MLSR AKGG SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT M
Sbjct: 1 FVKMLSRAGAKGGQSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSM 60
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
MELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FC
Sbjct: 61 MELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFC 120
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ETKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR
Sbjct: 121 ETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRG 180
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYAST 450
Y+QKCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST
Sbjct: 181 YLQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYAST 240
Query: 451 FTY 453
++
Sbjct: 241 LSH 243
>gi|270304891|gb|ACZ71384.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
Length = 254
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 201/246 (81%), Positives = 220/246 (89%), Gaps = 4/246 (1%)
Query: 212 STIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQD 271
S++FV MLSR A+GG SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF D
Sbjct: 1 SSMFVXMLSRAGARGGQSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFND 60
Query: 272 TQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTG 327
T MMELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G
Sbjct: 61 TSMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVG 120
Query: 328 DFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGD 387
+FCETKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG LFR LFRKLT D
Sbjct: 121 EFCETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRMLFRKLTKD 180
Query: 388 VRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTY 447
VR Y+QKCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTY
Sbjct: 181 VRGYLQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTY 240
Query: 448 ASTFTY 453
AST ++
Sbjct: 241 ASTLSH 246
>gi|120561261|gb|ABM27015.1| RNA polymerase II second largest subunit, partial [Allomyces
macrogynus]
Length = 896
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/364 (56%), Positives = 263/364 (72%), Gaps = 22/364 (6%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKV+IAQE+ +TN V+VF K P+ + AE+ S AE + S+ V M
Sbjct: 1 SEKVIIAQERTATNTVFVFSKPPPSAVLFQAEIRSQAEDGPKTLSSFIVKM--------- 51
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
S Q I A+LPYI+ +IPI++LFRALG AD DILE ICYDF D QM+E+L+PS++ AF
Sbjct: 52 SRDQNITASLPYIQQDIPIMVLFRALGLVADRDILERICYDFSDDQMLEMLKPSIDNAFT 111
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ ++ +IGKRG +G+TR+K I+YA ++L++E+LPH+G C+T+K+Y+ G+++H
Sbjct: 112 IQEREVALDFIGKRGRNIGLTRDKRIRYAHDLLERELLPHIGITPGCQTRKSYFIGYMVH 171
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLL ALGRR DDRDH+G KRLDLAGPLL LFRT F+KLT DV Y C++ G++ N
Sbjct: 172 RLLLAALGRRQVDDRDHFGKKRLDLAGPLLASLFRTFFQKLTKDVSRYFTVCIERGREFN 231
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW----- 457
L AI + TIT GL+Y+LATGNWG Q TRAGVSQVLN T+AST ++
Sbjct: 232 LNMAINSNTITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNTPIG 291
Query: 458 ---KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
KLAKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM YI++GSA+ PILEFLEEW T
Sbjct: 292 REGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGSASGPILEFLEEWTT 351
Query: 515 ENFE 518
EN E
Sbjct: 352 ENLE 355
>gi|343129074|gb|AEL88460.1| RNA polymerase II [Metzgeria pubescens]
Length = 249
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/242 (83%), Positives = 218/242 (90%), Gaps = 4/242 (1%)
Query: 216 VPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMM 275
V MLSR AKGGSSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MM
Sbjct: 1 VKMLSRAGAKGGSSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMM 60
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
ELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCE
Sbjct: 61 ELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCE 120
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
TKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y
Sbjct: 121 TKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGY 180
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF 451
+QKCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST
Sbjct: 181 LQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTL 240
Query: 452 TY 453
++
Sbjct: 241 SH 242
>gi|120561259|gb|ABM27014.1| RNA polymerase II second largest subunit, partial [Allomyces
macrogynus]
Length = 867
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/364 (56%), Positives = 263/364 (72%), Gaps = 22/364 (6%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKV+IAQE+ +TN V+VF K P+ + AE+ S AE + S+ V M
Sbjct: 1 SEKVIIAQERTATNTVFVFSKPPPSAVLFQAEIRSQAEDGPKTLSSFIVKM--------- 51
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
S Q I A+LPYI+ +IPI++LFRALG AD DILE ICYDF D QM+E+L+PS++ AF
Sbjct: 52 SRDQNITASLPYIQQDIPIMVLFRALGLVADRDILERICYDFSDDQMLEMLKPSIDNAFT 111
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ ++ +IGKRG +G+TR+K I+YA ++L++E+LPH+G C+T+K+Y+ G+++H
Sbjct: 112 IQEREIALDFIGKRGRNIGLTRDKRIRYAHDLLERELLPHIGITPGCQTRKSYFIGYMVH 171
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLL ALGRR DDRDH+G KRLDLAGPLL LFRT F+KLT DV Y C++ G++ N
Sbjct: 172 RLLLAALGRRQVDDRDHFGKKRLDLAGPLLASLFRTFFQKLTKDVSRYFTVCIERGREFN 231
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW----- 457
L AI + TIT GL+Y+LATGNWG Q TRAGVSQVLN T+AST ++
Sbjct: 232 LNMAINSNTITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNTPIG 291
Query: 458 ---KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
KLAKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM YI++GSA+ PILEFLEEW T
Sbjct: 292 REGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGSASGPILEFLEEWTT 351
Query: 515 ENFE 518
EN E
Sbjct: 352 ENLE 355
>gi|270304939|gb|ACZ71408.1| RNA polymerase II second largest subunit [Metzgeria furcata]
Length = 250
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/242 (83%), Positives = 218/242 (90%), Gaps = 4/242 (1%)
Query: 216 VPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMM 275
V MLSR AKGGSSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MM
Sbjct: 1 VXMLSRAGAKGGSSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMM 60
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
ELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCE
Sbjct: 61 ELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCE 120
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
TKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y
Sbjct: 121 TKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGY 180
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF 451
+QKCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST
Sbjct: 181 LQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTL 240
Query: 452 TY 453
++
Sbjct: 241 SH 242
>gi|343129040|gb|AEL88443.1| RNA polymerase II [Metzgeria frontipilis]
Length = 251
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/243 (83%), Positives = 218/243 (89%), Gaps = 4/243 (1%)
Query: 215 FVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQM 274
FV MLSR AKGG SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT M
Sbjct: 1 FVXMLSRAGAKGGQSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSM 60
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
MELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FC
Sbjct: 61 MELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFC 120
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ETKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR
Sbjct: 121 ETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRG 180
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYAST 450
Y+QKCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST
Sbjct: 181 YLQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYAST 240
Query: 451 FTY 453
++
Sbjct: 241 LSH 243
>gi|343129042|gb|AEL88444.1| RNA polymerase II [Metzgeria frontipilis]
Length = 251
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/243 (83%), Positives = 218/243 (89%), Gaps = 4/243 (1%)
Query: 215 FVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQM 274
FV MLSR AKGG SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT M
Sbjct: 1 FVXMLSRAGAKGGQSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSM 60
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
MELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FC
Sbjct: 61 MELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFC 120
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ETKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR
Sbjct: 121 ETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRG 180
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYAST 450
Y+QKCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST
Sbjct: 181 YLQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYAST 240
Query: 451 FTY 453
++
Sbjct: 241 LSH 243
>gi|343129072|gb|AEL88459.1| RNA polymerase II [Metzgeria pubescens]
gi|343129078|gb|AEL88462.1| RNA polymerase II [Metzgeria pubescens]
Length = 249
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/242 (83%), Positives = 218/242 (90%), Gaps = 4/242 (1%)
Query: 216 VPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMM 275
V MLSR AKGGSSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MM
Sbjct: 1 VXMLSRAGAKGGSSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMM 60
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
ELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCE
Sbjct: 61 ELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCE 120
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
TKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y
Sbjct: 121 TKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGY 180
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF 451
+QKCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST
Sbjct: 181 LQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTL 240
Query: 452 TY 453
++
Sbjct: 241 SH 242
>gi|120561267|gb|ABM27018.1| RNA polymerase II second largest subunit, partial [Entophlyctis
confervae-glomeratae]
Length = 886
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/364 (57%), Positives = 265/364 (72%), Gaps = 14/364 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+M+ N YVF K P++Y Y E+ S ES ++ PST+F+ ML+ KG
Sbjct: 1 SEKVLIAQERMAFNTCYVFAKAPPSQYTYSCEIRSQNESGSKLPSTLFIKMLAPKGGKG- 59
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
+ GQ I +LPYI+ +IPIII+FRALG D DILEH+CYDF D QM+ELL+PS+EEAF
Sbjct: 60 TLGQVIRTSLPYIKADIPIIIVFRALGIVTDRDILEHVCYDFNDHQMLELLKPSVEEAFV 119
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ+++ +IG RG +GV+++K I+YA +IL KEMLPHV +T+KA++FG++IH
Sbjct: 120 IQDKEVALDFIGVRGTQMGVSKDKRIRYATDILTKEMLPHVSMESHHQTRKAFFFGYMIH 179
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLL AL RR DDRDH+G KRLDLAGPLL LFRTLFRKLT DV Y +K V+ G + N
Sbjct: 180 RLLLAALERRPLDDRDHFGRKRLDLAGPLLSSLFRTLFRKLTTDVSRYTKKIVETGGEFN 239
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW----- 457
L A+K+ TIT GL+YSLATGNWG Q +AGVSQVLN TYAST ++
Sbjct: 240 LAMALKSATITKGLQYSLATGNWGDQKKFMSAKAGVSQVLNRYTYASTLSHLRRLNTPIG 299
Query: 458 ---KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
KLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM +I++G+ A +L +L E+G
Sbjct: 300 RDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSHISVGNDAKIVLPYLGEFGM 359
Query: 515 ENFE 518
E E
Sbjct: 360 ETLE 363
>gi|270304935|gb|ACZ71406.1| RNA polymerase II second largest subunit [Metzgeria furcata]
Length = 249
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/240 (83%), Positives = 217/240 (90%), Gaps = 4/240 (1%)
Query: 218 MLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMEL 277
MLSR AKGGSSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMEL
Sbjct: 2 MLSRAGAKGGSSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMEL 61
Query: 278 LRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETK 333
LRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETK
Sbjct: 62 LRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETK 121
Query: 334 KAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQ 393
KAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+Q
Sbjct: 122 KAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQ 181
Query: 394 KCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
KCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 182 KCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 241
>gi|343129044|gb|AEL88445.1| RNA polymerase II [Metzgeria frontipilis]
Length = 244
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/242 (83%), Positives = 217/242 (89%), Gaps = 4/242 (1%)
Query: 216 VPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMM 275
V MLSR AKGG SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MM
Sbjct: 1 VKMLSRAGAKGGQSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMM 60
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
ELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCE
Sbjct: 61 ELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCE 120
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
TKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y
Sbjct: 121 TKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGY 180
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF 451
+QKCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST
Sbjct: 181 LQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTL 240
Query: 452 TY 453
++
Sbjct: 241 SH 242
>gi|270304881|gb|ACZ71379.1| RNA polymerase II second largest subunit [Metzgeria leptoneura]
Length = 254
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/246 (81%), Positives = 219/246 (89%), Gaps = 4/246 (1%)
Query: 212 STIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQD 271
S++FV MLS AKGGSSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF D
Sbjct: 1 SSMFVXMLSXAGAKGGSSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFND 60
Query: 272 TQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTG 327
T MMELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G
Sbjct: 61 TSMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVG 120
Query: 328 DFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGD 387
+FCETKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT D
Sbjct: 121 EFCETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKD 180
Query: 388 VRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTY 447
VR Y+QKCVDNGK++NL +A+KAKTIT GL YSLATGN GQ N AG RAGVSQVLN LTY
Sbjct: 181 VRGYLQKCVDNGKEINLAYAVKAKTITSGLXYSLATGNXGQANTAGVRAGVSQVLNRLTY 240
Query: 448 ASTFTY 453
AST ++
Sbjct: 241 ASTLSH 246
>gi|6606091|gb|AAF19058.1|AF107786_1 DNA-dependent RNA polymerase II RPB140, partial [Neolecta
vitellina]
Length = 930
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/364 (56%), Positives = 266/364 (73%), Gaps = 13/364 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKV+IAQE+ + N V VF K P+ ++VAEV S E +R S++ + +L
Sbjct: 1 SEKVIIAQERSAANTVQVFTKSAPSPLSHVAEVRSAVEKGSRLISSLQIKLLRNPQKTSV 60
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
S+G+ I ATLPYI+ +I I+I+FRALG AD +ILEHIC+D D QM+ELL+P +EEAF
Sbjct: 61 SNGRLIKATLPYIKDDIDIVIVFRALGVLADREILEHICFDPNDHQMLELLKPCIEEAFV 120
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ + YIGKRG T G++R++ I++A+EI+QKE+LPHV + E++KA++ G+++H
Sbjct: 121 IQEKDLALDYIGKRGQTTGLSRDRRIRHAREIMQKELLPHVSQTEGYESRKAFFLGYMVH 180
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLL AL RR +DDRDH+G KRLDLAGPLL LFR LF+KL DV Y+QKCV+N ++ N
Sbjct: 181 RLLLVALERREQDDRDHFGKKRLDLAGPLLANLFRMLFKKLYKDVYRYMQKCVENNREFN 240
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
L A+KA TIT GLKYSLATGNWG Q AA + GVSQVLN T+AST ++
Sbjct: 241 LTLAVKAPTITQGLKYSLATGNWGEQKKAAQAKVGVSQVLNRYTFASTLSHLRRTNTPIG 300
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHNS WG++CPAETPEGQACGLVKNLALM YI++G + P++EFLEEWG
Sbjct: 301 RDGKIAKPRQLHNSHWGLVCPAETPEGQACGLVKNLALMSYISVGGPSAPLIEFLEEWGM 360
Query: 515 ENFE 518
E+ E
Sbjct: 361 ESLE 364
>gi|88601072|gb|ABD46532.1| RNA polymerase II second largest subunit, partial [Vuilleminia
comedens]
Length = 880
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/355 (57%), Positives = 260/355 (73%), Gaps = 14/355 (3%)
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS-GQYIHAT 236
M+TNHVYVF K QP+ +++AE+ S E + S V + +++S + S+ G I AT
Sbjct: 1 MATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYTKSSDRASSNPGGQIKAT 60
Query: 237 LPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ---- 292
+PYI+ +IPI I FRALG +D DILEHICYD QDTQM+E+L+P +++ F+Q+++
Sbjct: 61 IPYIKVDIPIWIXFRALGVISDRDILEHICYDMQDTQMLEMLKPCIDDGIFVQDREVCLD 120
Query: 293 YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGR 352
YIG RG T G++RE+ + YA+EILQKEMLPHV + E+KKAY+FG++IHRLLL AL R
Sbjct: 121 YIGNRGTTTGLSRERRLXYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALER 180
Query: 353 RAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKT 412
R DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ N+ A+K T
Sbjct: 181 RELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETSKEFNISLAVKHNT 240
Query: 413 ITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPR 463
IT GLKYSLATGNWG Q + ++AG SQVLN TYAST ++ K+AKPR
Sbjct: 241 ITNGLKYSLATGNWGDQKKSMASKAGXSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPR 300
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
QLHN+ WGM+CPAETPEGQACGLVKNLALM I++GS + P++EFLEEWG E+ E
Sbjct: 301 QLHNTHWGMVCPAETPEGQACGLVKNLALMSTISVGSYSAPVIEFLEEWGLESLE 355
>gi|45545355|gb|AAS67525.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Ustilago maydis]
Length = 887
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/363 (55%), Positives = 263/363 (72%), Gaps = 15/363 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+M+ NHVYVF K P ++AE+ S E + ST+ V + SR K
Sbjct: 1 SEKVLIAQERMAANHVYVFSKAPPAPVTFLAEIRSAVEKGGKTISTMQVKLFSRNKEK-- 58
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
++ I ATLPYIR +IPI+I+FRALG D ++L+HICYDF DT M+E+L+P +EEAF
Sbjct: 59 TANNTIRATLPYIRNDIPIVIVFRALGIVPDREVLQHICYDFNDTPMLEMLKPCIEEAFV 118
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ++ +IG+RG T G++R K YA+EILQKEMLPH+ T + TKKAY+FG++IH
Sbjct: 119 IQDRDVALDFIGRRGTTTGLSRAKRTVYAQEILQKEMLPHISTSEGSNTKKAYFFGYMIH 178
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLL AL RR DDRDH+G KR+DL GPL+ LFR LFRK+T DV ++QKCV+ ++ +
Sbjct: 179 RLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRMLFRKVTRDVYRHLQKCVEEHREFH 238
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
+Q A+K+ TIT GL+YSLATGNWG Q A +AGVSQVLN +AST ++
Sbjct: 239 IQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGVSQVLNRFAFASTLSHLRRTNTPIG 298
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM +T+G+ + PI+EFLEE+G
Sbjct: 299 RDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATVTVGTPSAPIVEFLEEFGL 358
Query: 515 ENF 517
++
Sbjct: 359 DSL 361
>gi|6606137|gb|AAF19081.1|AF107809_1 DNA-dependent RNA polymerase II RPB140, partial [Peziza
quelepidotia]
Length = 927
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/364 (55%), Positives = 269/364 (73%), Gaps = 14/364 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VFKK P+ +VAE+ S E +R S++ + M + ++GG
Sbjct: 1 SEKVLIAQERSAANIVQVFKKAPPSPTPFVAEIRSAVEKGSRLISSMQIKMFGKMDSRGG 60
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
GQ I +TLPYI+++IP+ I+FRALG DEDIL H+CYD D QM+++L+P LEEAF
Sbjct: 61 Y-GQTIKSTLPYIKSDIPVAIVFRALGVIPDEDILNHVCYDRNDVQMLDMLKPCLEEAFV 119
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ ++ +IG+RG++ GV ++K ++YA+EILQKE LPH+ + ET+KA++ G+++H
Sbjct: 120 IQKREIALDFIGRRGSSSGVAKDKRVRYAREILQKEFLPHISQKEGSETRKAFFLGYMVH 179
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
++LLCAL R+ DDRDH+G KRLDLAGPLL GLFRTLF+KLT DV Y+QKCV++ ++ N
Sbjct: 180 QMLLCALERKEPDDRDHFGKKRLDLAGPLLAGLFRTLFKKLTKDVYKYLQKCVESSREFN 239
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
L A+K+ TIT GLKYSLATGNWG Q AA RAGVSQVLN T+AST ++
Sbjct: 240 LTLAVKSTTITNGLKYSLATGNWGEQKKAASARAGVSQVLNRYTFASTLSHLRGTNTPIG 299
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM Y+++GS A PI++F+ +
Sbjct: 300 RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYVSVGSPADPIIDFMLQRNM 359
Query: 515 ENFE 518
E E
Sbjct: 360 EVLE 363
>gi|45120566|gb|AAO64652.2| RNA polymerase II subunit RPB2, partial [Chondrostereum purpureum]
Length = 770
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/352 (57%), Positives = 257/352 (73%), Gaps = 15/352 (4%)
Query: 180 TNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPY 239
TNHVYVF K QP+ ++AE+ S E + S V M R + S G I AT+PY
Sbjct: 1 TNHVYVFAKGQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRHQER--SMGNIIKATIPY 58
Query: 240 IRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIG 295
I+ +IPI ++FRALG +D DILEHICYD QDTQM+E+L+P +++ F IQ+++ +IG
Sbjct: 59 IKVDIPIWVVFRALGVISDRDILEHICYDMQDTQMLEMLKPCIDDGFVIQDREVALDFIG 118
Query: 296 KRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
RG T G++R++ I+YA+EILQKEMLPHV + E+KKAY+FG++IHRLLL AL RR
Sbjct: 119 NRGTTTGLSRDRRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERREL 178
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITG 415
DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ NL A+K +TIT
Sbjct: 179 DDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITN 238
Query: 416 GLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLH 466
GLKYSLATGNWG Q + ++AGVSQVLN TYAST ++ K+AKPRQLH
Sbjct: 239 GLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLH 298
Query: 467 NSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
N+ WGM+CPAETPEGQACGLVKNLALM I++GS + P++EFLEEWG E+ E
Sbjct: 299 NTHWGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEEWGLESLE 350
>gi|170084317|ref|XP_001873382.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650934|gb|EDR15174.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 942
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/354 (57%), Positives = 257/354 (72%), Gaps = 15/354 (4%)
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATL 237
M+TNHVYVF K QP+ ++AE+ S E + S V M R + S G + AT+
Sbjct: 1 MATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQER--SLGNVMKATI 58
Query: 238 PYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----Y 293
PYI+ +IPI ++FR LG +D DILEHICYD QD QM+E+L+P +++ F IQ+++ +
Sbjct: 59 PYIKVDIPIWVVFRGLGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDF 118
Query: 294 IGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRR 353
IG RG T G++RE+ I+YA+EILQKEMLPHV + E+KKAY+FG++IHRLLL AL RR
Sbjct: 119 IGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERR 178
Query: 354 AEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTI 413
DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ NL A+K +TI
Sbjct: 179 ELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTI 238
Query: 414 TGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQ 464
T GLKYSLATGNWG Q + ++AGVSQVLN TYAST ++ K+AKPRQ
Sbjct: 239 TNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQ 298
Query: 465 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LHN+ WGM+CPAETPEGQACGLVKNLALM I++GS + P++EFLEEWG E+ E
Sbjct: 299 LHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLE 352
>gi|45120564|gb|AAO64650.2| RNA polymerase II subunit RPB2, partial [Bondarzewia montana]
Length = 867
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/357 (56%), Positives = 261/357 (73%), Gaps = 15/357 (4%)
Query: 175 QEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIH 234
QE+M+ NHVYVF K QP+ ++AE+ S E + S V M R+ K +SG +
Sbjct: 1 QERMARNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMYHRSQEK--TSGNVMK 58
Query: 235 ATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ-- 292
AT+PYI+ +IPI ++FRALG +D DILEHICYD QD+QM+E+L+P +++ F IQ+++
Sbjct: 59 ATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDSQMLEMLKPCIDDGFVIQDREIA 118
Query: 293 --YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCAL 350
+IG RG T G++RE+ ++YA+EILQKEMLPH+ + E+KKAY+FG++IHRLLL A+
Sbjct: 119 LDFIGNRGTTTGLSRERRLRYAQEILQKEMLPHISMMEGSESKKAYFFGYMIHRLLLAAM 178
Query: 351 GRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKA 410
RR DD DH+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ NL A+K
Sbjct: 179 ERRELDDXDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKH 238
Query: 411 KTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAK 461
TIT GLKYSLATGNWG Q + ++AGVSQVLN TYAST ++ K+AK
Sbjct: 239 NTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGRXGKIAK 298
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PRQLHN+ WGM+CPAETPEGQACGLVKNLALM I++GS + P+++FLEEWG E+ E
Sbjct: 299 PRQLHNTHWGMVCPAETPEGQACGLVKNLALMATISVGSPSGPVIDFLEEWGLESLE 355
>gi|45545353|gb|AAS67524.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Usnea cornuta]
Length = 903
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/364 (56%), Positives = 265/364 (72%), Gaps = 14/364 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VFKK Q N YVAE+ S E +R S++ + + + G
Sbjct: 1 SEKVLIAQERSAANIVQVFKKAQSNT-PYVAEIRSAVEKGSRLISSMQMKLYEKGEGSKG 59
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
GQ I TLPYI+TEIPI I+FRALG +DEDIL HICYD +DTQM+E+L+P +EEAF
Sbjct: 60 GFGQTIKCTLPYIKTEIPIAIVFRALGVVSDEDILNHICYDRKDTQMLEMLKPCIEEAFV 119
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ+++ +IGKRG + GVTR+K IKYA++I+QKE+LPH+ + ET+KA++ G+++H
Sbjct: 120 IQDREVALDFIGKRGNSQGVTRDKRIKYARDIMQKELLPHISQVEGSETRKAFFLGYMVH 179
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLL CALGRR DDRDH+G KRLDLAGPLL LFR F KLT DV Y+QKCV+N K+ N
Sbjct: 180 RLLQCALGRREVDDRDHFGKKRLDLAGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEFN 239
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
+ A+K+ +T GL+YSLATGNWG Q AA +AGVSQVLN T+AST ++
Sbjct: 240 MTLAVKSTHLTNGLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNTPIG 299
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YIT+G+ + PI++F+ +
Sbjct: 300 RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNM 359
Query: 515 ENFE 518
E E
Sbjct: 360 EVLE 363
>gi|347309788|gb|AEO79204.1| DNA-directed RNA polymerase II subunit, partial [Hymenolepis
microstoma]
Length = 793
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 226/365 (61%), Positives = 272/365 (74%), Gaps = 17/365 (4%)
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR---TSAKG 226
KVLIAQEKM+TN VYVF+++ +KYAY E+ S E +RP ST++V M++R S K
Sbjct: 1 KVLIAQEKMATNTVYVFQQKD-SKYAYKTEIRSCLEHSSRPASTLWVNMMARGGKDSNKR 59
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
+ GQ I A LPYI+ EIP++I+FRALGF AD DILEHI YDF D +M E+++PSL+EAF
Sbjct: 60 ATIGQRIVAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDNEMREMIKPSLDEAF 119
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ+Q+ +IG RGA GVT+EK IKYA+EILQKE LPH+G DFC+T+KAY+ G+++
Sbjct: 120 CIQDQKVALNFIGSRGARPGVTKEKRIKYAREILQKETLPHIGISDFCDTRKAYFLGYMV 179
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLLL AL RR DDRDHYGNKRLDLAGPLL LFR LFR LT ++R Y QK VD GKD
Sbjct: 180 HRLLLTALRRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEIRLYAQKFVDKGKDF 239
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW---- 457
L+ AI++ IT GLKYSLATGNWG Q A R GVSQVLN LT+AST ++
Sbjct: 240 GLESAIRSGIITDGLKYSLATGNWGDQKKANQARPGVSQVLNRLTFASTLSHLRRLNSPI 299
Query: 458 ----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLA+PRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW
Sbjct: 300 GRDGKLARPRQLHNTLWGMICPAETPEGSAVGLVKNLALMAYISVGSQPSPILEFLEEWS 359
Query: 514 TENFE 518
EN E
Sbjct: 360 MENLE 364
>gi|344288485|ref|XP_003415980.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Loxodonta africana]
Length = 1010
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/308 (66%), Positives = 236/308 (76%), Gaps = 13/308 (4%)
Query: 224 AKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLE 283
AK + GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PSL+
Sbjct: 83 AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 142
Query: 284 EAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFG 339
EAF IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+ G
Sbjct: 143 EAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLG 202
Query: 340 HIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNG 399
+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D G
Sbjct: 203 YMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRG 262
Query: 400 KDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW- 457
KD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 263 KDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLN 322
Query: 458 -------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLE 510
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLE
Sbjct: 323 SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLE 382
Query: 511 EWGTENFE 518
EW EN E
Sbjct: 383 EWSMENLE 390
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%), Gaps = 3/72 (4%)
Query: 4 EEERLEEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
E+ + +ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I
Sbjct: 6 EDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65
Query: 61 EIRPESQHNPGQ 72
+++ E+QH G+
Sbjct: 66 DLQAEAQHASGE 77
>gi|300394768|gb|ADK11922.1| DNA-directed RNA polymerase II subunit two, partial [Leucogyrophana
mollusca]
Length = 875
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/352 (57%), Positives = 256/352 (72%), Gaps = 15/352 (4%)
Query: 180 TNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPY 239
TNHVYVF K QP+ ++AE+ S E + S V M R + S G + AT+PY
Sbjct: 1 TNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQER--SLGNVMKATIPY 58
Query: 240 IRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIG 295
IR +IPI ++FRALG +D DILEHICYD QD QM+E+L+P +++ F IQ+++ +IG
Sbjct: 59 IRVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIG 118
Query: 296 KRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
RG T G++RE+ I+YA+EILQKEMLPHV + E+KKAY+FG++IHRLLL AL RR
Sbjct: 119 NRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERREL 178
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITG 415
DDRDH+G KRLDLAGPLL LFR LF+KLT DV Y+QKCV+ K+ NL A+K +TIT
Sbjct: 179 DDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITN 238
Query: 416 GLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLH 466
GLKYSLATGNWG Q + ++AGVSQVLN TYAST ++ K+AKPRQLH
Sbjct: 239 GLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLH 298
Query: 467 NSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
N+ WGM+CPAETPEGQACGLVKNLALM I++GS + P++EFLEEWG E+ E
Sbjct: 299 NTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLE 350
>gi|160331027|ref|XP_001712221.1| rpb2 [Hemiselmis andersenii]
gi|159765668|gb|ABW97896.1| rpb2 [Hemiselmis andersenii]
Length = 1222
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 239/591 (40%), Positives = 347/591 (58%), Gaps = 87/591 (14%)
Query: 8 LEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQ 67
+ + +E Q++ W ++ ++F+E LVRQQLDSF+EF QNTMQ+I+D+ I I+ E
Sbjct: 2 ISDKNDEIIKQDDMWIILESFFKENNLVRQQLDSFNEFIQNTMQDIIDDIPPIVIKTEFD 61
Query: 68 HNPGQQSD--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT-- 117
++ F +++LSKP E +G T TL ARLRNLTYS+PLY D++
Sbjct: 62 KFKSSETKKSLKLILRFGQLHLSKPTFIEENGTTHTLLPNEARLRNLTYSSPLYCDISTI 121
Query: 118 -------------KRVIKKGHDG---EEVPIMLRSSYCTLYQNSQKALTELGECPYDEGG 161
+ +K H +PIM++S +C L + L +GECP D GG
Sbjct: 122 TLNITEELTGEIKENFLKDDHQKILLGRIPIMVKSRFCVLDKLLPMDLIRIGECPIDPGG 181
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA------------YVAEVCSMAESQNR 209
YFIINGSEKV++ QE+++ N+VY+F K++ K + Y AE S+AE
Sbjct: 182 YFIINGSEKVIVGQEQLAWNYVYIFSKKETTKNSSKLYFYTKKNLLYFAECRSVAEFGRW 241
Query: 210 PPSTIFV-------PMLSRTSAKGGSS---------GQYIHATLPYIRTEIPIIILFRAL 253
PS + V P ++ + + SS G Y+ A LP + +IP+ +F+AL
Sbjct: 242 SPSLLTVKVCITVFPKKNKINKQSSSSTNSALHFYGGLYLRAILPLFKKDIPVTWIFKAL 301
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQY---------------IGK-- 296
GF + +IL HICY+ +D +++E +R SLE+ + ++ + IG+
Sbjct: 302 GFENETEILRHICYNDEDEELIESIRYSLEDDKLMASETFSNISSILDQETALAAIGQHI 361
Query: 297 -RGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
RGA + IK+A E LQKE LPHVG G E +K ++FG+II++L+ +G+RA
Sbjct: 362 SRGA-----QSLRIKHAYETLQKEFLPHVGIGQGFELRKGFFFGYIINKLMATQIGKRAT 416
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN-LQFAIKAKTIT 414
DDRDHYG+KRLD+AGPLL LFR L K+ D+R+ +Q+ + GK+ N + IK +T
Sbjct: 417 DDRDHYGHKRLDVAGPLLSVLFRQLLGKVIKDLRTSLQRKSNLGKNFNQISDFIKPSFLT 476
Query: 415 GGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLH 466
G++Y+LATGNWG A +R GVSQVLN L+++ST ++ L KPRQLH
Sbjct: 477 TGIQYALATGNWGTDKQA-SRTGVSQVLNRLSFSSTLSHLRRLNSPSGKDGNLTKPRQLH 535
Query: 467 NSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
NS WG++CPAETPEG +CGLV+NLAL ++TIGS+ PI+EFLEE+ EN
Sbjct: 536 NSHWGLICPAETPEGHSCGLVRNLALSAFVTIGSSTLPIMEFLEEFKIENL 586
>gi|6606133|gb|AAF19079.1|AF107807_1 DNA-dependent RNA polymerase II RPB140, partial [Leotia viscosa]
Length = 938
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/364 (55%), Positives = 266/364 (73%), Gaps = 13/364 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VFKK P+ YVAE+ S E +R S++ + + S+ + G
Sbjct: 1 SEKVLIAQERSAANIVQVFKKPPPSPTPYVAEIRSALEKGSRLISSLTIKLHSKGDNQRG 60
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
S G I +TLPYI+ +IP+ I+FRALG +DEDIL HICYD DTQM+E+L+P +EEAF
Sbjct: 61 SFGATIKSTLPYIKADIPMGIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFV 120
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ+++ YIGKRG +G+TR+K IKYA++I+QKE+LPH+ + ET+KA++ G+++H
Sbjct: 121 IQDREVALDYIGKRGNAMGLTRDKRIKYARDIMQKELLPHISQKEGSETRKAFFLGYMVH 180
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
+LL CALGRR DDRDH+G KRLDLAGPLL LFR LF+KLT D+ Y Q+CV+N K+ N
Sbjct: 181 KLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRNLFKKLTQDLFKYTQRCVENRKEFN 240
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
IK+ T+T GLKYSLATGNWG Q AA + AGVSQVLN T+AST ++
Sbjct: 241 PALGIKSTTLTAGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIG 300
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM Y+T+G+ + PI+EF+ +
Sbjct: 301 RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIVEFMIQRSM 360
Query: 515 ENFE 518
E E
Sbjct: 361 EVLE 364
>gi|6606131|gb|AAF19078.1|AF107806_1 DNA-dependent RNA polymerase II RPB140, partial [Microglossum
viride]
Length = 938
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/364 (55%), Positives = 266/364 (73%), Gaps = 13/364 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VFKK P+ +VAE+ S E +R S++ + + S+ + G
Sbjct: 1 SEKVLIAQERSAANIVQVFKKPPPSPTPFVAEIRSALEKGSRLISSLTIKLHSKGDNQRG 60
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
S G + +TLPYI+ +IPI I+FRALG +DEDIL HICYD DTQM+E+L+P +EEAF
Sbjct: 61 SFGSTVKSTLPYIKADIPIGIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFV 120
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ+++ YIGKRG +G+TR+K IKYA++I+QKE+LPH+ + ET+KA++ G+++H
Sbjct: 121 IQDREVALDYIGKRGNAMGLTRDKRIKYARDIMQKELLPHISQKEGSETRKAFFLGYMVH 180
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
+LL CALGRR DDRDH+G KRLDLAGPLL LFR LF+KLT D+ Y Q+CV+N K+ N
Sbjct: 181 KLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRNLFKKLTQDLFKYTQRCVENRKEFN 240
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
IK+ T+T GLKYSLATGNWG Q AA + AGVSQVLN T+AST ++
Sbjct: 241 PALGIKSTTLTAGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIG 300
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM Y+T+G+ + PI+EF+ +
Sbjct: 301 RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIVEFMIQRSM 360
Query: 515 ENFE 518
E E
Sbjct: 361 EVLE 364
>gi|378729989|gb|EHY56448.1| DNA-directed RNA polymerase II subunit RPB2 [Exophiala dermatitidis
NIH/UT8656]
Length = 1263
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 233/571 (40%), Positives = 325/571 (56%), Gaps = 71/571 (12%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR-----PESQ 67
+ + T E+ W VIS++F+ K L Q+DSF+ F ++ +Q++V+E + + E
Sbjct: 31 DTDITSEDCWKVISSFFDIKKLASMQIDSFNHFMRSGLQDLVNEKGGVTLDHAQNVDEDD 90
Query: 68 HNP----GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV--- 120
NP + F ++ LSKP M E DG TA ARLR+LTY++P +V +T+R
Sbjct: 91 PNPVVIKRHEVKFGKVTLSKPNMVEGDGVTADCMPHEARLRSLTYASPAFVKMTRRTYYA 150
Query: 121 ---------IKKG---HDGEE----------------------VPIMLRSSYCTLYQN-- 144
+ +G DG + +PIM+RS C L +
Sbjct: 151 KEKPWDDAGVDEGVMREDGSQLYWREGTEEGDFDSEKEVYIGKIPIMVRSMTCHLMSDRF 210
Query: 145 -SQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSM 203
++ L GECPYD+GGYFIINGSEKVLIAQE+ + N V VF+K P + ++AE+ S+
Sbjct: 211 QDERDLYAWGECPYDQGGYFIINGSEKVLIAQERSAGNIVQVFQKAAPAPFTHLAEIRSV 270
Query: 204 AESQNRPPSTIFVPMLSRTSAKGGSS-GQYIHATLPYIRTEIPIIILFRALGFTADEDIL 262
+ R S V + R G+ I LPY++ +IP++I+FRAL +D DIL
Sbjct: 271 IDRGARMMSQCTVKLFRRVDGPEGTKIDNPIRVQLPYVKQDIPLVIVFRALDIVSDADIL 330
Query: 263 EHICYDFQDTQMMELLRPSLEEAFFIQN----QQYIGKRGATVGVTREKMIKYAKEILQK 318
E IC+D D +MM++L SL+E IQ + +I +RG + + K+A +ILQK
Sbjct: 331 EKICFDQSDKEMMDMLMGSLQEGQPIQGADLARDFIARRGNVPTLKSHERQKHATDILQK 390
Query: 319 EMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 378
E LPH+G G +KA++ G+++HRLL CALGR DDRDH G KRLDLAGPL+ LFR
Sbjct: 391 EFLPHIGQGPDATARKAFFLGYMVHRLLKCALGRAEPDDRDHLGKKRLDLAGPLMTNLFR 450
Query: 379 TLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAG 437
F K D Y+QK V+ G+ +N+ K IT GLKYSLATGNWG Q +AG
Sbjct: 451 LQFDKAAKDFYRYMQKRVEAGQPINIMAGFKHPIITSGLKYSLATGNWGDQKKLDKAKAG 510
Query: 438 VSQVLNCLTYASTFTYYL--------SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 489
VSQVL+ T++ST ++ K+AKPRQLHN+ WG +CPAETPEGQACGLVKN
Sbjct: 511 VSQVLSRYTFSSTLSHLRRTNAPIGREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKN 570
Query: 490 LALMVYITIGSAAYPILEF--------LEEW 512
L+LM +T P++ + LE+W
Sbjct: 571 LSLMSMVTNSYETAPLVNYVLTKNVEALEDW 601
>gi|120561271|gb|ABM27020.1| RNA polymerase II second largest subunit, partial [Chytriomyces
hyalinus]
Length = 883
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/367 (56%), Positives = 264/367 (71%), Gaps = 20/367 (5%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLI QE+M+TNHV+VF K+QP Y Y E+ S E ++ ST+F+ M+ A G
Sbjct: 1 SEKVLIGQERMATNHVFVFAKKQPATYLYSVEIRSQGEKASKLASTLFMKMM----APKG 56
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
GQ I +LPYI+ ++PI+++FRALG +D++I+E ICYDF DT M+ELL+P +EEAF
Sbjct: 57 DMGQVIKTSLPYIKQDVPIVVVFRALGIISDKEIMEKICYDFDDTPMLELLKPCIEEAFP 116
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ ++ YIG+RG +VG T+EK IKYA +ILQKEMLPHVGT ET+KAY+FG++IH
Sbjct: 117 IQTREVALDYIGRRGQSVGATKEKRIKYAMDILQKEMLPHVGTKAHQETRKAYFFGYMIH 176
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLL + RR DDRDH+G KRLDLAGPL+ LFR LFRKLT D+ +QK V++ K N
Sbjct: 177 RLLLATMQRRDFDDRDHFGKKRLDLAGPLMTQLFRILFRKLTKDITRQLQKHVESNKAFN 236
Query: 404 LQF---AIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW-- 457
+Q ++ A + GLKYSLATGNWG Q A+ RAGVSQVLN T+AST ++
Sbjct: 237 IQSLERSLDANVLKNGLKYSLATGNWGDQSKASQARAGVSQVLNRYTFASTLSHLRRLNS 296
Query: 458 ------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEE 511
KLAKPRQLHN+QWGM+CPAETPEGQACGLVKN++LM IT+G+++ P +E LEE
Sbjct: 297 PTDRDGKLAKPRQLHNTQWGMVCPAETPEGQACGLVKNMSLMAIITVGTSSGPFIEHLEE 356
Query: 512 WGTENFE 518
E E
Sbjct: 357 LSMETLE 363
>gi|120561269|gb|ABM27019.1| RNA polymerase II second largest subunit, partial [Chytriomyces
hyalinus]
Length = 883
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/367 (56%), Positives = 264/367 (71%), Gaps = 20/367 (5%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLI QE+M+TNHV+VF K+QP Y Y E+ S E ++ ST+F+ M+ A G
Sbjct: 1 SEKVLIGQERMATNHVFVFAKKQPATYLYSVEIRSQGEKASKLASTLFMKMM----APKG 56
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
GQ I +LPYI+ ++PI+++FRALG +D++I+E ICYDF DT M+ELL+P +EEAF
Sbjct: 57 DMGQVIKTSLPYIKQDVPIVVVFRALGIISDKEIMEKICYDFDDTPMLELLKPCIEEAFP 116
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ ++ YIG+RG +VG T+EK IKYA +ILQKEMLPHVGT ET+KAY+FG++IH
Sbjct: 117 IQTREVALDYIGRRGQSVGATKEKRIKYAMDILQKEMLPHVGTKAHQETRKAYFFGYMIH 176
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLL + RR DDRDH+G KRLDLAGPL+ LFR LFRKLT D+ +QK V++ K N
Sbjct: 177 RLLLATMQRRDFDDRDHFGKKRLDLAGPLMTQLFRILFRKLTKDITRQLQKHVESNKAFN 236
Query: 404 LQF---AIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW-- 457
+Q ++ A + GLKYSLATGNWG Q A+ RAGVSQVLN T+AST ++
Sbjct: 237 IQSLERSLDANVLKNGLKYSLATGNWGDQSKASQARAGVSQVLNRYTFASTLSHLRRLNS 296
Query: 458 ------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEE 511
KLAKPRQLHN+QWGM+CPAETPEGQACGLVKN++LM IT+G+++ P +E LEE
Sbjct: 297 PTDRDGKLAKPRQLHNTQWGMVCPAETPEGQACGLVKNMSLMAIITVGTSSGPFIEHLEE 356
Query: 512 WGTENFE 518
E E
Sbjct: 357 LSMETLE 363
>gi|164428317|ref|XP_957106.2| DNA-directed RNA polymerase II 140 kDa polypeptide [Neurospora
crassa OR74A]
gi|157072100|gb|EAA27870.2| DNA-directed RNA polymerase II 140 kDa polypeptide [Neurospora
crassa OR74A]
Length = 1005
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/381 (53%), Positives = 267/381 (70%), Gaps = 14/381 (3%)
Query: 152 LGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPP 211
L ECPYD+GGYFIINGSEKVLIAQE+ + N V VFKK +Y AE+ S E +R
Sbjct: 4 LNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLI 63
Query: 212 STIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQD 271
S++ + + ++ G + TLPY++ E+ + I+FRALG +DEDIL HICYD +D
Sbjct: 64 SSLQMRLHTKADQNKGRLANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRRD 123
Query: 272 TQMMELLRPSLEEAFFIQNQQ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGT 326
+QM+E LRP +EEAF IQ+++ YIGKRG + G+ R IK AKE+LQKE+LPH+
Sbjct: 124 SQMLEALRPCIEEAFCIQDREVALDYIGKRGNGSTGINRNGRIKAAKEMLQKELLPHISQ 183
Query: 327 GDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTG 386
+ CET+KA++ G+++H+LL C LGRR DDRDH+G KRLDLAGPLL LFR + R+LT
Sbjct: 184 AEGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRRLTQ 243
Query: 387 DVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCL 445
D+ Y+++CVD K +L IKA T+T GLKYSLATGNWG Q A + AGVSQVLN
Sbjct: 244 DLMGYMKRCVDTNKHFSLALGIKASTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRY 303
Query: 446 TYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 497
T++ST ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM +++
Sbjct: 304 TFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVS 363
Query: 498 IGSAAYPILEFLEEWGTENFE 518
+G+ A PI+EF+ E E
Sbjct: 364 VGTLADPIIEFMIARNMEVLE 384
>gi|45120582|gb|AAO64686.2| RNA polymerase II subunit RPB2, partial [Coltricia perennis]
Length = 803
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/357 (55%), Positives = 258/357 (72%), Gaps = 15/357 (4%)
Query: 175 QEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIH 234
QE+M+TN VYVF K QP+ +++AE+ S E + S V M R + +SG I
Sbjct: 1 QERMATNQVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKMYHRGQER--ASGNVIK 58
Query: 235 ATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ-- 292
AT+PYI+ +IPI +LFRALG +D DILEHIC+D D QM+E+L+P +++ F IQ+++
Sbjct: 59 ATIPYIKVDIPIWVLFRALGVISDRDILEHICFDMNDPQMLEMLKPCIDDGFVIQDREIA 118
Query: 293 --YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCAL 350
+IG RG G++REK I+YA+EILQKEMLPH+ + E+KKAY+ G++IHRLLL AL
Sbjct: 119 LDFIGNRGTATGLSREKRIRYAQEILQKEMLPHISMSEGSESKKAYFLGYMIHRLLLAAL 178
Query: 351 GRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKA 410
RR DDRDH+G KRLDLAGPLL GLFR LFRK+T DV Y+QKCV++ ++ N+ A+K
Sbjct: 179 ERRELDDRDHFGKKRLDLAGPLLAGLFRMLFRKMTKDVYRYLQKCVESHREFNINLAVKT 238
Query: 411 KTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAK 461
IT GLKYSLATGNWG Q A T+AGVSQVLN TYAST ++ K+AK
Sbjct: 239 NVITNGLKYSLATGNWGDQKKAMTTKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAK 298
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PRQLHN+ WGM+CPAETPEGQACGLVKNL+LM I++GS++ ++ FLEEWG E+ E
Sbjct: 299 PRQLHNTHWGMVCPAETPEGQACGLVKNLSLMASISVGSSSALVIXFLEEWGLESLE 355
>gi|89274904|gb|ABD65893.1| RNA polymerase II second largest subunit, partial [Spongipellis
pachyodon]
Length = 901
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/352 (56%), Positives = 256/352 (72%), Gaps = 15/352 (4%)
Query: 180 TNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPY 239
TNHVYVF K QP+ +++AE+ S E + S V + R+ + S+G + AT+PY
Sbjct: 1 TNHVYVFAKGQPSPISHLAEIRSAVEKGGKTISQFQVKLYHRSQER--STGNVMKATIPY 58
Query: 240 IRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIG 295
I+ +IPI ++FRALG +D DILEHICYD QD QM+E+L+P +++ F IQ+++ +IG
Sbjct: 59 IKVDIPIWVVFRALGVISDRDILEHICYDMQDNQMLEMLKPCIDDGFVIQDREVALDFIG 118
Query: 296 KRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
RG T G+ RE+ ++YA+EILQKEMLPH+ + E+KKAY+FG++IHRLLL AL RR
Sbjct: 119 NRGTTTGLNRERRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYMIHRLLLAALERREL 178
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITG 415
DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ NL A+K TIT
Sbjct: 179 DDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITN 238
Query: 416 GLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLH 466
GLKYSLATGNWG Q + ++AGVSQVLN TYAST ++ K+AKPRQLH
Sbjct: 239 GLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLH 298
Query: 467 NSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
N WGM+CPAETPEGQACGLVKNL+LM I++GS + P++EFLEEWG E+ E
Sbjct: 299 NHHWGMVCPAETPEGQACGLVKNLSLMSCISVGSFSGPVIEFLEEWGLESLE 350
>gi|343129010|gb|AEL88428.1| RNA polymerase II [Metzgeria leptoneura]
Length = 249
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/243 (80%), Positives = 213/243 (87%), Gaps = 4/243 (1%)
Query: 215 FVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQM 274
FV MLSR AKGGSSGQ+I AT PY R EIPII++FRALGF AD+DIL+HICYDF DT M
Sbjct: 1 FVXMLSRAGAKGGSSGQFIRATXPYXRXEIPIIVIFRALGFVADKDILQHICYDFXDTSM 60
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
MELLRPSLEEAF IQNQQ YIGKRG+TVGV R+K IKYAKEILQKEMLPHVG G+FC
Sbjct: 61 MELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVXRDKRIKYAKEILQKEMLPHVGVGEFC 120
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ETKKAY+FG+IIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR
Sbjct: 121 ETKKAYFFGYIIHRLLLCALGRRXEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRG 180
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYAST 450
Y+QKCVDNGK++NL +A+KAKTIT G KYSLATGNWGQ N AG RAGVSQVLN LTYAST
Sbjct: 181 YLQKCVDNGKEINLAYAVKAKTITSGXKYSLATGNWGQANTAGVRAGVSQVLNRLTYAST 240
Query: 451 FTY 453
++
Sbjct: 241 LSH 243
>gi|45330861|gb|AAS57791.1| RNA polymerase II second largest subunit [Cortinarius iodes]
Length = 878
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/352 (57%), Positives = 255/352 (72%), Gaps = 15/352 (4%)
Query: 180 TNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPY 239
TNHVYVF K QP+ ++AE+ S E + S V M R + S G + AT+PY
Sbjct: 1 TNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQER--SLGNVMKATIPY 58
Query: 240 IRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIG 295
I+ +IPI ++FRALG +D DILEHICYD QD+QM+E+L+P +++ F IQ+++ +IG
Sbjct: 59 IKVDIPIWVVFRALGVISDRDILEHICYDLQDSQMLEMLKPCIDDGFVIQDREVALDFIG 118
Query: 296 KRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
RG T G++RE+ I+YA+EILQKEMLPHV + E +KA++FG++IHRLLL AL RR
Sbjct: 119 NRGTTTGLSRERRIRYAQEILQKEMLPHVAMKEGSEYQKAHFFGYMIHRLLLAALERREL 178
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITG 415
DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ NL A+K +TIT
Sbjct: 179 DDRDHFGKKRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITN 238
Query: 416 GLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLH 466
GLKYSLATGNWG Q + ++AGVSQVLN TYAST ++ K+AKPRQLH
Sbjct: 239 GLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLH 298
Query: 467 NSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
N+ WGM+CPAETPEGQACGLVKNLALM I++GS A P +EFLEEWG E+ E
Sbjct: 299 NTHWGMVCPAETPEGQACGLVKNLALMACISVGSIAAPGIEFLEEWGLESLE 350
>gi|55273993|gb|AAV48867.1| RNA polymerase II second largest subunit [Armillaria mellea]
Length = 884
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 200/357 (56%), Positives = 255/357 (71%), Gaps = 15/357 (4%)
Query: 175 QEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIH 234
QE+M+TNHVYVF K QP ++AE+ S+ + + S V M R + S G +
Sbjct: 1 QERMATNHVYVFAKAQPAPINFLAEIRSLVKKGGKTISQFQVKMFHRHQER--SLGNVMK 58
Query: 235 ATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ-- 292
AT+PYI+ +IPI ++FRALG +D DILEHICYD QD QM+E+L+P +++ F IQ+++
Sbjct: 59 ATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVA 118
Query: 293 --YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCAL 350
+IG RG T G++RE+ I+YA+EILQKEMLPHV + E+KKAY+FG++IHRLLL AL
Sbjct: 119 LDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMSEGSESKKAYFFGYMIHRLLLAAL 178
Query: 351 GRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKA 410
RR DDRDH G RLDLAGPLL LFR LFRK DV Y+QKCV+ K+ N+ +K
Sbjct: 179 ERRELDDRDHLGKNRLDLAGPLLANLFRMLFRKFNRDVYRYLQKCVETHKEFNVSVGVKH 238
Query: 411 KTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAK 461
+TIT GLKYSLATGNWG Q + ++AGVSQVLN TYAST ++ K+AK
Sbjct: 239 QTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAK 298
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PRQLHN+ WGM+CPAETPEGQACGLVKNLALM I++GS + P++EFLEEWG E E
Sbjct: 299 PRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLETLE 355
>gi|6606135|gb|AAF19080.1|AF107808_1 DNA-dependent RNA polymerase II RPB140, partial [Sclerotinia
sclerotiorum]
Length = 938
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/364 (54%), Positives = 264/364 (72%), Gaps = 13/364 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VFKK +Y+AE+ S E +R S++ + + + + G
Sbjct: 1 SEKVLIAQERSAANIVQVFKKPANQAVSYLAEIRSALEKGSRLISSLQIKLYDKGDSGRG 60
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
G+ + +TLPYI+ +IPI I+FRALG +DEDIL HICYD DTQM+E+L+P +EEAF
Sbjct: 61 GFGKTVKSTLPYIKQDIPIAIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFV 120
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ+++ +IGKRG +TR+K IKYA++I+QKE+LPH+ + ET+KA++ G+++H
Sbjct: 121 IQDREVALDFIGKRGNGTSLTRDKRIKYARDIMQKELLPHISQKEGSETRKAFFLGYMVH 180
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
+LL CALGRR DDRDH+G KRLDLAGPLL LFR LFR+LT DV Y+Q+CV+N ++ N
Sbjct: 181 KLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRNLFRRLTTDVYRYLQRCVENNREFN 240
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
L +K+ TIT GLKYSLATGNWG Q AA + AGVSQVLN T+AST ++
Sbjct: 241 LTLGVKSTTITNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIG 300
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM Y+T+G+ + PI+EF+ +
Sbjct: 301 RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIVEFMIQRNM 360
Query: 515 ENFE 518
E E
Sbjct: 361 EVLE 364
>gi|120561265|gb|ABM27017.1| RNA polymerase II second largest subunit, partial [Coelomomyces
stegomyiae]
Length = 862
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/364 (56%), Positives = 257/364 (70%), Gaps = 22/364 (6%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKV+IAQE+ +TN V+VFKK P+ Y AE+ S AE+ + S+ V M
Sbjct: 1 SEKVIIAQERTATNTVFVFKKALPSPVEYQAEIRSQAETGPKTMSSFIVKM--------- 51
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
S +I ATLPYI +IPI+I+FRALG D DILE ICYDF D QM+E+L+P ++EAF
Sbjct: 52 SRQHHITATLPYINQDIPIVIVFRALGLLTDRDILERICYDFNDHQMLEMLKPCIDEAFQ 111
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
+ Q+ +IGKRG VG+TRE+ I+YA ++L++E+LPH+GT CET+K+Y+ G++I+
Sbjct: 112 VNTQELALDHIGKRGKNVGLTRERRIRYACDLLERELLPHIGTTPGCETRKSYFIGYMIN 171
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLL ALGRR DDRDH+G KRLDLAGPLL LFRT F+KLT DV Y C++ + N
Sbjct: 172 RLLSTALGRREVDDRDHFGKKRLDLAGPLLASLFRTFFQKLTKDVGRYFTNCLERSRPFN 231
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW----- 457
L AI + TIT GL+Y+LATGNWG Q TRAGVSQVLN T+AST ++
Sbjct: 232 LNMAINSNTITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNTPIG 291
Query: 458 ---KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
KLAKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM I++GSA+ PI EFL EW T
Sbjct: 292 REGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSIISVGSASEPIHEFLSEWTT 351
Query: 515 ENFE 518
EN E
Sbjct: 352 ENLE 355
>gi|89274900|gb|ABD65891.1| RNA polymerase II second largest subunit, partial [Pycnoporus sp.
ZW02.30]
Length = 896
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/349 (57%), Positives = 253/349 (72%), Gaps = 15/349 (4%)
Query: 183 VYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRT 242
VYVF K QP+ +++AE+ S E + S V + R+ + S G + AT+PYI+
Sbjct: 1 VYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYHRSQER--SLGNVMKATIPYIKV 58
Query: 243 EIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRG 298
+IPI ++FRALG +D DILEHICYD QD QM+E+L+P ++E F IQ+++ YIG RG
Sbjct: 59 DIPIWVVFRALGVISDRDILEHICYDMQDNQMLEMLKPCIDEGFVIQDREIALDYIGNRG 118
Query: 299 ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDR 358
T G+ RE+ ++YA+EILQKEMLPHV + E+KKAY+FG++IHRLLL AL RR DDR
Sbjct: 119 TTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDR 178
Query: 359 DHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLK 418
DH+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ NL A+K TIT GLK
Sbjct: 179 DHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLK 238
Query: 419 YSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQ 469
YSLATGNWG Q + ++AGVSQVLN TYAST ++ K+AKPRQLHN+
Sbjct: 239 YSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 298
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
WGM+CPAETPEGQACGLVKNL+LM I++GS + P++EFLEEWG E+ E
Sbjct: 299 WGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLE 347
>gi|55583704|gb|AAV53371.1| RNA polymerase II second largest subunit [Strobilomyces floccopus]
Length = 908
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/348 (56%), Positives = 253/348 (72%), Gaps = 15/348 (4%)
Query: 184 YVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTE 243
YVF K QP+ ++AE+ S E + S V M R + + G + AT+PYIR +
Sbjct: 1 YVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQER--TLGNIMKATIPYIRVD 58
Query: 244 IPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGA 299
IPI ++FRALG +D DILEHICYD QD+QM+E+L+P +++ F IQ+++ +IG RG
Sbjct: 59 IPIWVVFRALGVISDRDILEHICYDMQDSQMLEMLKPCIDDGFVIQDREVALDFIGNRGT 118
Query: 300 TVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRD 359
T G++RE+ I+YA+EILQKEMLPHV + E+KKAY+FG++IHRLLL AL RR DDRD
Sbjct: 119 TTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRD 178
Query: 360 HYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKY 419
H+G KRLDLAGPLL LFR LF+KLT DV Y+QKCV+ K+ NL A+K +TIT GLKY
Sbjct: 179 HFGKKRLDLAGPLLANLFRMLFKKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKY 238
Query: 420 SLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQW 470
SLATGNWG Q + ++AGVSQVLN TYAST ++ K+AKPRQLHN+ W
Sbjct: 239 SLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHW 298
Query: 471 GMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GM+CPAETPEGQACGLVKNLALM I++GS + P++EFLEEWG E+ E
Sbjct: 299 GMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLE 346
>gi|270304864|gb|ACZ71371.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270304866|gb|ACZ71372.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270305054|gb|ACZ71465.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
gi|270305078|gb|ACZ71477.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
Length = 235
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 193/230 (83%), Positives = 209/230 (90%), Gaps = 4/230 (1%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++N
Sbjct: 121 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEIN 180
Query: 404 LQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
L +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 181 LAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 230
>gi|343129014|gb|AEL88430.1| RNA polymerase II [Metzgeria aurantiaca]
Length = 241
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/230 (83%), Positives = 209/230 (90%), Gaps = 4/230 (1%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++N
Sbjct: 121 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEIN 180
Query: 404 LQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
L +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 181 LAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 230
>gi|270304925|gb|ACZ71401.1| RNA polymerase II second largest subunit [Metzgeria furcata]
Length = 240
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/230 (83%), Positives = 209/230 (90%), Gaps = 4/230 (1%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++N
Sbjct: 121 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEIN 180
Query: 404 LQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
L +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 181 LAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 230
>gi|270304860|gb|ACZ71369.1| RNA polymerase II second largest subunit [Metzgeria furcata]
Length = 235
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/230 (83%), Positives = 209/230 (90%), Gaps = 4/230 (1%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++N
Sbjct: 121 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEIN 180
Query: 404 LQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
L +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 181 LAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 230
>gi|270304852|gb|ACZ71365.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270304854|gb|ACZ71366.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270304929|gb|ACZ71403.1| RNA polymerase II second largest subunit [Metzgeria leptoneura]
gi|270304942|gb|ACZ71409.1| RNA polymerase II second largest subunit [Metzgeria furcata]
Length = 237
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/230 (83%), Positives = 209/230 (90%), Gaps = 4/230 (1%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++N
Sbjct: 121 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEIN 180
Query: 404 LQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
L +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 181 LAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 230
>gi|270304848|gb|ACZ71363.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270304856|gb|ACZ71367.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270304927|gb|ACZ71402.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270304937|gb|ACZ71407.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270304966|gb|ACZ71421.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
gi|270304980|gb|ACZ71428.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
gi|270305008|gb|ACZ71442.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270305028|gb|ACZ71452.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270305038|gb|ACZ71457.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270305044|gb|ACZ71460.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
gi|270305048|gb|ACZ71462.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270305056|gb|ACZ71466.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
gi|270305058|gb|ACZ71467.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
gi|270305060|gb|ACZ71468.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
gi|270305062|gb|ACZ71469.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
gi|270305064|gb|ACZ71470.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
gi|270305066|gb|ACZ71471.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270305068|gb|ACZ71472.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
Length = 239
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/230 (83%), Positives = 209/230 (90%), Gaps = 4/230 (1%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++N
Sbjct: 121 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEIN 180
Query: 404 LQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
L +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 181 LAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 230
>gi|89274898|gb|ABD65890.1| RNA polymerase II second largest subunit, partial [Polyporus
squamosus]
Length = 898
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/349 (56%), Positives = 253/349 (72%), Gaps = 15/349 (4%)
Query: 183 VYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRT 242
VYVF K QP+ +++AE+ S E + S V + R+ + S G + AT+PYI+
Sbjct: 1 VYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYHRSKER--SLGNVMKATIPYIKV 58
Query: 243 EIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRG 298
+IPI ++FRALG +D DILEHICYD QD QM+E+L+P ++E F IQ+++ +IG RG
Sbjct: 59 DIPIWVVFRALGVISDRDILEHICYDLQDNQMLEMLKPCIDEGFVIQDREIALDFIGNRG 118
Query: 299 ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDR 358
T+G+ RE+ ++YA+EILQKEMLPHV + E+KKAY+FG++IHRLLL AL RR DDR
Sbjct: 119 TTIGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDR 178
Query: 359 DHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLK 418
DH+G KRLDLAGPLL LFR LFRKLT DV ++QKCV+ K+ NL A+K TIT GLK
Sbjct: 179 DHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRHLQKCVEMNKEFNLSLAVKHNTITNGLK 238
Query: 419 YSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQ 469
YSLATGNWG Q + +AGVSQVLN TYAST ++ K+AKPRQLHN+
Sbjct: 239 YSLATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 298
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
WGM+CPAETPEGQACGLVKNL+LM I++GS + P++EFLEEWG E+ E
Sbjct: 299 WGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLE 347
>gi|300394774|gb|ADK11925.1| DNA-directed RNA polymerase II subunit two, partial [Boletopsis
leucomelaena]
Length = 549
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/354 (55%), Positives = 254/354 (71%), Gaps = 15/354 (4%)
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATL 237
M+TNHVYVF K QP+ +++AE+ S E + S V + R + S G + AT+
Sbjct: 1 MATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYHRGXER--SLGNIMKATI 58
Query: 238 PYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----Y 293
PYI+ +IPI ++FRALG +D DILEHICYD QD QM+E+L+P +++ F IQ+++ +
Sbjct: 59 PYIKVDIPIWVVFRALGVISDRDILEHICYDMQDVQMLEMLKPCIDDGFVIQDREVALDF 118
Query: 294 IGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRR 353
IG RG T G+ RE+ ++YA+EILQKEMLPHV + E+KKAY+ G++IHRLLL A+ RR
Sbjct: 119 IGNRGTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFXGYMIHRLLLAAMERR 178
Query: 354 AEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTI 413
DRDH+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ NL A+K TI
Sbjct: 179 ELXDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVEAHKEFNLXLAVKHNTI 238
Query: 414 TGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQ 464
T GLKYSLATGNWG Q + ++AGVSQVLN TYAST ++ K+AKP Q
Sbjct: 239 TNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTXSHLRRCNTPLGREGKIAKPXQ 298
Query: 465 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LHN+ WGM+CPAETPEGQACGLVKNLALM I++GS + P++EFLEEWG E+ E
Sbjct: 299 LHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFLEEWGLESLE 352
>gi|270304944|gb|ACZ71410.1| RNA polymerase II second largest subunit [Metzgeria furcata]
Length = 228
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/228 (84%), Positives = 207/228 (90%), Gaps = 4/228 (1%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++N
Sbjct: 121 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEIN 180
Query: 404 LQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF 451
L +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST
Sbjct: 181 LAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTL 228
>gi|270304962|gb|ACZ71419.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
Length = 227
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/227 (85%), Positives = 207/227 (91%), Gaps = 4/227 (1%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++N
Sbjct: 121 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEIN 180
Query: 404 LQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYAST 450
L +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST
Sbjct: 181 LAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYAST 227
>gi|270304872|gb|ACZ71375.1| RNA polymerase II second largest subunit [Metzgeria myriopoda]
Length = 236
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/229 (83%), Positives = 208/229 (90%), Gaps = 4/229 (1%)
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF I
Sbjct: 2 SGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVI 61
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
QNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHR
Sbjct: 62 QNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHR 121
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++NL
Sbjct: 122 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEINL 181
Query: 405 QFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
+A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 182 AYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 230
>gi|45545313|gb|AAS67504.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Candida tropicalis]
Length = 1020
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/364 (55%), Positives = 269/364 (73%), Gaps = 16/364 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R S++ + + R + G
Sbjct: 1 SEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALEKGSRLISSMQIKLYGRD--EKG 58
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
+G+ I ATLPYI+ +IPI+I+FRALG D DILEHICYD D QM+E+L+P +EE F
Sbjct: 59 VAGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGFV 118
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ + ET+KA++ G++++
Sbjct: 119 IQEREVALDFIGRRG-VLGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVN 177
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCAL R+ DDRDH+G KRLDLAGPLL GLFR LF+KLT D+ +Y+Q+CV+N D N
Sbjct: 178 RLLLCALERKEPDDRDHFGKKRLDLAGPLLAGLFRILFKKLTKDIYNYMQRCVENDSDFN 237
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
L A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 238 LTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIG 297
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++GS++ PIL FL ++G
Sbjct: 298 RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGSSSEPILGFLRDFGL 357
Query: 515 ENFE 518
E E
Sbjct: 358 EVLE 361
>gi|270304874|gb|ACZ71376.1| RNA polymerase II second largest subunit [Metzgeria myriopoda]
Length = 235
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/229 (83%), Positives = 208/229 (90%), Gaps = 4/229 (1%)
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF I
Sbjct: 2 SGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVI 61
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
QNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHR
Sbjct: 62 QNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHR 121
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++NL
Sbjct: 122 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEINL 181
Query: 405 QFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
+A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 182 AYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 230
>gi|270304964|gb|ACZ71420.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
Length = 237
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/230 (83%), Positives = 208/230 (90%), Gaps = 4/230 (1%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G FCETKKAY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGVFCETKKAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++N
Sbjct: 121 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEIN 180
Query: 404 LQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
L +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 181 LAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 230
>gi|89274902|gb|ABD65892.1| RNA polymerase II second largest subunit, partial [Sparassis
crispa]
Length = 900
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/348 (55%), Positives = 253/348 (72%), Gaps = 15/348 (4%)
Query: 184 YVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTE 243
YVF K QP+ +++AE+ S E + S V + R + S G + A++PYI+ +
Sbjct: 1 YVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYHRNQER--SLGNVMKASIPYIKVD 58
Query: 244 IPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGA 299
IPI ++FRALG +D DILEHICYD QD QM+E+L+P +++ F IQ+++ +IG RG
Sbjct: 59 IPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNRGT 118
Query: 300 TVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRD 359
T G+ RE+ ++YA+EILQKEMLPH+ + E+KKAY+FG++IHRLLL AL RR DDRD
Sbjct: 119 TTGLNRERRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRD 178
Query: 360 HYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKY 419
H+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV++ K+ NL A+K+ TIT GLKY
Sbjct: 179 HFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVESHKEFNLNLAVKSNTITNGLKY 238
Query: 420 SLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQW 470
SLATGNWG Q + ++AGVSQVLN TYAST ++ K+AKPRQLHN+ W
Sbjct: 239 SLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHW 298
Query: 471 GMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GM+CPAETPEGQACGLVKNL+LM I++GS + P++EFLEEWG E+ E
Sbjct: 299 GMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLEEWGLESLE 346
>gi|270305040|gb|ACZ71458.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
Length = 238
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/229 (83%), Positives = 208/229 (90%), Gaps = 4/229 (1%)
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF I
Sbjct: 1 SGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVI 60
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
QNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHR
Sbjct: 61 QNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHR 120
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++NL
Sbjct: 121 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEINL 180
Query: 405 QFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
+A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 181 AYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 229
>gi|270304876|gb|ACZ71377.1| RNA polymerase II second largest subunit [Metzgeria myriopoda]
gi|270304895|gb|ACZ71386.1| RNA polymerase II second largest subunit [Metzgeria myriopoda]
gi|270305014|gb|ACZ71445.1| RNA polymerase II second largest subunit [Metzgeria myriopoda]
gi|270305022|gb|ACZ71449.1| RNA polymerase II second largest subunit [Metzgeria myriopoda]
Length = 237
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/229 (83%), Positives = 208/229 (90%), Gaps = 4/229 (1%)
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF I
Sbjct: 2 SGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVI 61
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
QNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHR
Sbjct: 62 QNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHR 121
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++NL
Sbjct: 122 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEINL 181
Query: 405 QFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
+A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 182 AYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 230
>gi|270305000|gb|ACZ71438.1| RNA polymerase II second largest subunit [Metzgeria myriopoda]
Length = 239
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/229 (83%), Positives = 208/229 (90%), Gaps = 4/229 (1%)
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF I
Sbjct: 2 SGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVI 61
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
QNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHR
Sbjct: 62 QNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHR 121
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++NL
Sbjct: 122 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEINL 181
Query: 405 QFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
+A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 182 AYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 230
>gi|270304889|gb|ACZ71383.1| RNA polymerase II second largest subunit [Metzgeria myriopoda]
Length = 229
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/228 (84%), Positives = 207/228 (90%), Gaps = 4/228 (1%)
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF I
Sbjct: 2 SGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVI 61
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
QNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHR
Sbjct: 62 QNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHR 121
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++NL
Sbjct: 122 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEINL 181
Query: 405 QFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFT 452
+A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST +
Sbjct: 182 AYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLS 229
>gi|270304931|gb|ACZ71404.1| RNA polymerase II second largest subunit [Metzgeria furcata]
Length = 237
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/230 (83%), Positives = 208/230 (90%), Gaps = 4/230 (1%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPY RTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQYIRATLPYXRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++N
Sbjct: 121 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEIN 180
Query: 404 LQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
L +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 181 LAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 230
>gi|270304830|gb|ACZ71354.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
Length = 241
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/230 (83%), Positives = 208/230 (90%), Gaps = 4/230 (1%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++N
Sbjct: 121 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEIN 180
Query: 404 LQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
L +A+KAKTIT GL YSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 181 LAYAVKAKTITSGLXYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 230
>gi|89274894|gb|ABD65888.1| RNA polymerase II second largest subunit, partial [Laetiporus
sulphureus]
Length = 897
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/348 (56%), Positives = 251/348 (72%), Gaps = 15/348 (4%)
Query: 184 YVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTE 243
YVF K QP+ +++AE+ S E + S V + R + S G + AT+PYI+ +
Sbjct: 1 YVFAKAQPSPVSFLAEIRSAVERGGKTISQFQVKLYHRNQER--SLGNVMKATIPYIKVD 58
Query: 244 IPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGA 299
IPI ++FRALG +D DILEHICYD QD QM+E+L+P +++ F IQ+++ +IG RG
Sbjct: 59 IPIWVVFRALGVISDRDILEHICYDMQDVQMLEMLKPCIDDGFVIQDREVALDFIGNRGT 118
Query: 300 TVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRD 359
T G+ RE+ ++YA+EILQKEMLPHV + E+KKAY+FG++IHRLLL A+ RR DDRD
Sbjct: 119 TTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAAMERRDLDDRD 178
Query: 360 HYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKY 419
H+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ NL A+K TIT GLKY
Sbjct: 179 HFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLNLAVKHNTITNGLKY 238
Query: 420 SLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQW 470
SLATGNWG Q + ++AGVSQVLN TYAST ++ K+AKPRQLHN+ W
Sbjct: 239 SLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHW 298
Query: 471 GMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GM+CPAETPEGQACGLVKNL+LM I++GS + P++EFLEEWG E+ E
Sbjct: 299 GMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLE 346
>gi|270304844|gb|ACZ71361.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
Length = 236
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/229 (83%), Positives = 207/229 (90%), Gaps = 4/229 (1%)
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF I
Sbjct: 2 SGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVI 61
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
QNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHR
Sbjct: 62 QNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHR 121
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LLLCALGRRAEDDRDHYGNKRLDLAGPLLG LFR LFRKLT DVR Y+QKCVDNGK++NL
Sbjct: 122 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRMLFRKLTKDVRGYLQKCVDNGKEINL 181
Query: 405 QFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
+A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 182 AYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 230
>gi|6606095|gb|AAF19060.1|AF107788_1 DNA-dependent RNA polymerase II RPB140 [Pichia kudriavzevii]
Length = 905
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/357 (56%), Positives = 260/357 (72%), Gaps = 15/357 (4%)
Query: 174 AQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLS--RTSAKGGSSGQ 231
AQE+ S N V VFKK + ++VAE+ S E +R S+I V + + +S K G G+
Sbjct: 1 AQERSSANIVQVFKKSGVSPISHVAEIRSALEKGSRLISSIQVKLSTGGASSFKAGGVGR 60
Query: 232 YIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ 291
I TLPYI+T++PI+I+FRALG D DIL+HICYD D QM+E+L+P +EE F IQ+Q
Sbjct: 61 SIKTTLPYIKTDVPIVIVFRALGVIEDGDILQHICYDDDDWQMLEMLKPCIEEGFLIQSQ 120
Query: 292 Q----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLL 347
+ YIG+RG VG+ RE+ I++AK+ILQ+E LPH+ ET KAY+FG+II+RLLL
Sbjct: 121 EVALDYIGRRGNAVGIKRERRIQFAKDILQREFLPHISQDGGHETNKAYFFGYIINRLLL 180
Query: 348 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA 407
CAL R+ +DDRDH+G KRLDLAGPLL LFR LFRKL+ D+ Y+Q+C+++G+D N+ A
Sbjct: 181 CALERKEQDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYRYMQRCIEHGEDFNIVSA 240
Query: 408 IKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWK 458
+K+ TIT GLKYSLATGNWG Q A ++AGVSQVLN TY+ST ++ K
Sbjct: 241 VKSTTITSGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGK 300
Query: 459 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
LAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++GSA+ PI LEEWG E
Sbjct: 301 LAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSASEPITYLLEEWGLE 357
>gi|270304826|gb|ACZ71352.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
gi|270304834|gb|ACZ71356.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
Length = 235
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/229 (83%), Positives = 207/229 (90%), Gaps = 4/229 (1%)
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF I
Sbjct: 2 SGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVI 61
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
QNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHR
Sbjct: 62 QNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHR 121
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LLLCALGRRAEDDRDHYGNKRLDLAGPLLG LFR LFRKLT DVR Y+QKCVDNGK++NL
Sbjct: 122 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRMLFRKLTKDVRGYLQKCVDNGKEINL 181
Query: 405 QFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
+A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 182 AYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 230
>gi|270304923|gb|ACZ71400.1| RNA polymerase II second largest subunit [Metzgeria furcata]
Length = 226
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/226 (84%), Positives = 206/226 (91%), Gaps = 4/226 (1%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++N
Sbjct: 121 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEIN 180
Query: 404 LQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYAS 449
L +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAS
Sbjct: 181 LAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYAS 226
>gi|270304868|gb|ACZ71373.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
gi|270304885|gb|ACZ71381.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
Length = 241
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/229 (83%), Positives = 207/229 (90%), Gaps = 4/229 (1%)
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF I
Sbjct: 2 SGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVI 61
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
QNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHR
Sbjct: 62 QNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHR 121
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LLLCALGRRAEDDRDHYGNKRLDLAGPLLG LFR LFRKLT DVR Y+QKCVDNGK++NL
Sbjct: 122 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRMLFRKLTKDVRGYLQKCVDNGKEINL 181
Query: 405 QFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
+A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 182 AYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 230
>gi|45545303|gb|AAS67499.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Aspergillus fumigatus]
Length = 936
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/365 (52%), Positives = 264/365 (72%), Gaps = 14/365 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VFKK P+ YVAE+ S E +R S + + + ++ + G
Sbjct: 1 SEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFAKGDSAKG 60
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
G I +TLPY++T+IPI+++FRALG +DEDIL HICYD DT M+E+L+P +EE F
Sbjct: 61 GFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFV 120
Query: 288 IQNQQ----YIGKRGAT-VGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ+++ +I KRG++ + E+ ++YA+EI+QKE+LPH+ + ET+KA++ G+++
Sbjct: 121 IQDREVALDFIAKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFLGYMV 180
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLL CALGRR DDRDH+G KRLDLAGPLL LFR LF ++T D++ YVQ+CV+ +++
Sbjct: 181 HRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVETNREI 240
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------- 454
L IKA T+TGGLKY+LATGNWG Q AA ++AGVSQVL+ TYAST ++
Sbjct: 241 YLNIGIKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLSRYTYASTLSHLRRTNTPI 300
Query: 455 -LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YIT+G+ + PI++F+ +
Sbjct: 301 GRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRN 360
Query: 514 TENFE 518
E E
Sbjct: 361 MEVLE 365
>gi|270304893|gb|ACZ71385.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
gi|270304903|gb|ACZ71390.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
Length = 237
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/229 (83%), Positives = 207/229 (90%), Gaps = 4/229 (1%)
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF I
Sbjct: 2 SGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVI 61
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
QNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHR
Sbjct: 62 QNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHR 121
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LLLCALGRRAEDDRDHYGNKRLDLAGPLLG LFR LFRKLT DVR Y+QKCVDNGK++NL
Sbjct: 122 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRMLFRKLTKDVRGYLQKCVDNGKEINL 181
Query: 405 QFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
+A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 182 AYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 230
>gi|270304846|gb|ACZ71362.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
Length = 239
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/229 (83%), Positives = 207/229 (90%), Gaps = 4/229 (1%)
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF I
Sbjct: 2 SGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVI 61
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
QNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHR
Sbjct: 62 QNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHR 121
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LLLCALGRRAEDDRDHYGNKRLDLAGPLLG LFR LFRKLT DVR Y+QKCVDNGK++NL
Sbjct: 122 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRMLFRKLTKDVRGYLQKCVDNGKEINL 181
Query: 405 QFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
+A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 182 AYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 230
>gi|6606107|gb|AAF19066.1|AF107794_1 DNA-dependent RNA polymerase II RPB140 [Byssochlamys nivea]
Length = 905
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/365 (52%), Positives = 263/365 (72%), Gaps = 14/365 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N VFKK P+ YVAE+ S E +R S + + + S+ + G
Sbjct: 1 SEKVLIAQERSAGNIAQVFKKAPPSPTPYVAEIRSAVEKGSRILSQLSLKLFSKGDSAKG 60
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
G I +TLPYI+T+IPI+++FRALG +DEDIL HICYD DT M+E+L+P +EE F
Sbjct: 61 GFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFV 120
Query: 288 IQNQQ----YIGKRGAT-VGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ+++ +I KRG++ + E+ ++YA+EI+QKE LPH+ + ET+KA++ G+++
Sbjct: 121 IQDREVALDFISKRGSSQTSMNHERRVRYAREIMQKEFLPHISQSEGSETRKAFFLGYMV 180
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLL CALGRR DDRDH+G KRLDLAGPLL LFRTLF ++T D++ YVQ+CV+ +++
Sbjct: 181 HRLLQCALGRRDVDDRDHFGKKRLDLAGPLLATLFRTLFTRVTRDLQRYVQRCVETNREI 240
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------- 454
L +KA T+TGGLKY+LATGNWG Q AA ++AGVSQVL+ TY+ST ++
Sbjct: 241 YLNIGVKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLSRYTYSSTLSHLRRTNTPI 300
Query: 455 -LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YIT+G+ + PI++F+ +
Sbjct: 301 GRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRN 360
Query: 514 TENFE 518
E E
Sbjct: 361 MEVLE 365
>gi|270304820|gb|ACZ71349.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
Length = 228
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/227 (84%), Positives = 205/227 (90%), Gaps = 4/227 (1%)
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF I
Sbjct: 2 SGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVI 61
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
QNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHR
Sbjct: 62 QNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHR 121
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LLLCALGRRAEDDRDHYGNKRLDLAGPLLG LFR LFRKLT DVR Y+QKCVDNGK++NL
Sbjct: 122 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRMLFRKLTKDVRGYLQKCVDNGKEINL 181
Query: 405 QFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF 451
+A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST
Sbjct: 182 AYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTL 228
>gi|270304976|gb|ACZ71426.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
Length = 238
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/230 (83%), Positives = 207/230 (90%), Gaps = 4/230 (1%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCALGRRAEDDRDHYGNKR DLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++N
Sbjct: 121 RLLLCALGRRAEDDRDHYGNKRXDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEIN 180
Query: 404 LQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
L +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LT AST ++
Sbjct: 181 LAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTXASTLSH 230
>gi|55273987|gb|AAV48864.1| RNA polymerase II second largest subunit [Albatrellus higanensis]
Length = 913
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/346 (55%), Positives = 250/346 (72%), Gaps = 15/346 (4%)
Query: 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIP 245
F++ QP+ +++AE+ S E + S V + R + S G + AT+PYI+ +IP
Sbjct: 3 FRQAQPSPISFLAEIRSAVEKGGKTISQFQVKLFHRNQER--SLGSVMKATIPYIKVDIP 60
Query: 246 IIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATV 301
I ++FRALG +D DILEHICYD QD QM+E+L+P +++ F IQ+++ +IG RG T
Sbjct: 61 IWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTT 120
Query: 302 GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHY 361
G+ RE+ ++YA+EILQKEMLPHV + E+KKAY+FG++IHRLLL AL RR DDRDH+
Sbjct: 121 GLNRERRLRYAQEILQKEMLPHVSMNEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHF 180
Query: 362 GNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSL 421
G KRLDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ NL A+K TIT GLKYSL
Sbjct: 181 GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSL 240
Query: 422 ATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGM 472
ATGNWG Q + ++AGVSQVLN TYAST ++ K+AKPRQLHN+ WGM
Sbjct: 241 ATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 300
Query: 473 MCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
+CPAETPEGQACGLVKNL+LM I++GS + P++EFLEEWG E+ E
Sbjct: 301 VCPAETPEGQACGLVKNLSLMSVISVGSLSAPVIEFLEEWGLESLE 346
>gi|270305032|gb|ACZ71454.1| RNA polymerase II second largest subunit [Metzgeria furcata]
Length = 225
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/225 (84%), Positives = 205/225 (91%), Gaps = 4/225 (1%)
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
GQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF IQ
Sbjct: 1 GQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVIQ 60
Query: 290 NQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRL 345
NQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHRL
Sbjct: 61 NQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHRL 120
Query: 346 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQ 405
LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++NL
Sbjct: 121 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEINLA 180
Query: 406 FAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYAST 450
+A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST
Sbjct: 181 YAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYAST 225
>gi|45545341|gb|AAS67518.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Peltigera membranacea]
Length = 895
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/355 (53%), Positives = 254/355 (71%), Gaps = 13/355 (3%)
Query: 177 KMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHAT 236
+ + N V VFKK P+ Y+AE+ S E +R S++ + + ++ G GQ + AT
Sbjct: 1 RSAANIVQVFKKAPPSATPYIAEIRSAVEKGSRLISSMQIKLFAKGENHKGGFGQTVKAT 60
Query: 237 LPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ---- 292
LPY++T++PI I+FR LG +DEDIL HICYD DTQM+E L+P +EEAF IQ+++
Sbjct: 61 LPYVKTDVPIGIVFRGLGIVSDEDILNHICYDRNDTQMLEKLKPCIEEAFVIQDREVALD 120
Query: 293 YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGR 352
+IG RG + ++R K +KYA++I+QKE+LPH+ D ETKKA++ G+++HR+L CALGR
Sbjct: 121 WIGSRGNSQSLSRPKRVKYARDIMQKELLPHISQTDGSETKKAFFLGYMVHRMLQCALGR 180
Query: 353 RAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKT 412
R DDRDH+G KRLDLAGPLL GLFR LF KLT DV Y+QKCV+N ++ NL +K+ T
Sbjct: 181 REVDDRDHFGKKRLDLAGPLLAGLFRMLFNKLTKDVFKYLQKCVENNREFNLTLGVKSTT 240
Query: 413 ITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPR 463
+T GLKYSLATGNWG Q AA ++AGVSQVLN T+AST ++ K+AKPR
Sbjct: 241 LTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPR 300
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
QLHN+ WG++CPAETPEGQACGLVKNLALM YIT+G+ PI++F+ + E E
Sbjct: 301 QLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPCEPIIDFMNQRNMEMLE 355
>gi|45545327|gb|AAS67511.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Dibaeis baeomyces]
Length = 893
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/355 (54%), Positives = 259/355 (72%), Gaps = 14/355 (3%)
Query: 177 KMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHAT 236
+ + N V VFKK K YVAE+ S E +R S++ + + S+ G GQ I AT
Sbjct: 1 RSAANIVQVFKKSDA-KTPYVAEIRSAVEKGSRLISSMQIKLHSKGEGAKGGFGQTIKAT 59
Query: 237 LPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ---- 292
LPYI++EIPI+I+FRALG +DEDIL HICYD +DTQM+E+L+P +EEAF IQ+++
Sbjct: 60 LPYIKSEIPIVIVFRALGVVSDEDILNHICYDRKDTQMLEMLKPCIEEAFVIQDREVALD 119
Query: 293 YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGR 352
+IGKRG + G+TR+K IKYA++I+QKE+LPH+ + ET+KA++ G+++HR+L LGR
Sbjct: 120 FIGKRGNSQGITRDKRIKYARDIMQKELLPHISQVEGSETRKAFFLGYMVHRMLQVTLGR 179
Query: 353 RAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKT 412
R DDRDH+G KRLDLAGPL+ GLFRTLF KLT DV Y+QKCV++ ++ NL +K+ T
Sbjct: 180 RDPDDRDHFGKKRLDLAGPLMAGLFRTLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTT 239
Query: 413 ITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPR 463
+T GL+YSLATGNWG Q AA ++AGVSQVLN T+AST ++ K+AKPR
Sbjct: 240 LTNGLRYSLATGNWGEQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPR 299
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
QLHN+ WG++CPAETPEGQACGLVKNLALM +T+GS + PI++F+ + E E
Sbjct: 300 QLHNTHWGLVCPAETPEGQACGLVKNLALMCCVTVGSPSEPIIDFMVQRNMEILE 354
>gi|88976158|gb|ABD59039.1| RNA polymerase II second largest subunit, partial [Macrolepiota
dolichaula]
Length = 882
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/344 (56%), Positives = 248/344 (72%), Gaps = 15/344 (4%)
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
K QP+ ++AE+ S E + S V M R + S G + AT+PYI+ +IPI
Sbjct: 1 KAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQER--SLGNVMKATIPYIKVDIPIW 58
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGV 303
++FR LG +D DILEHICYD QD QM+E+L+P +++ F IQ+++ +IG RG T G+
Sbjct: 59 VVFRGLGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGL 118
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
+RE+ I+YA+EILQKEMLPHV + E+KKAY+FG++IHRLLL AL RR DDRDH+G
Sbjct: 119 SRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGK 178
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLAT 423
KRLDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ NL A+K +TIT GLKYSLAT
Sbjct: 179 KRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLAT 238
Query: 424 GNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMC 474
GNWG Q + ++AGVSQVLN TYAST ++ K+AKPRQLHN+ WGM+C
Sbjct: 239 GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 298
Query: 475 PAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PAETPEGQACGLVKNLALM I++GS + P++EFLEEWG E+ E
Sbjct: 299 PAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLE 342
>gi|58618681|gb|AAW80835.1| RNA polymerase II second largest subunit [Cotylidia sp. MB5]
Length = 892
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/342 (57%), Positives = 246/342 (71%), Gaps = 15/342 (4%)
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
QP+ ++AE+ S E + S V M R KG SG + AT+PYI+ +IPI ++
Sbjct: 2 QPSPINFLAEIRSAVEKGGKTISQFQVKMYHRNQDKG--SGNVMKATIPYIKVDIPIWVV 59
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
FRALG +D DILEHICYD QD QM+E+L+P +++ F IQ+++ +IG RG G++R
Sbjct: 60 FRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREIALDFIGNRGTATGLSR 119
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
E+ ++YA+EILQKEMLPHV + E+KKAY+FG++IHRLLL AL R DDRDH+G KR
Sbjct: 120 ERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERPELDDRDHFGKKR 179
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGN 425
LDLAGPLL GLFR LFRKLT DV Y+QKCV+ K N+ A+K TIT GLKYSLATGN
Sbjct: 180 LDLAGPLLAGLFRMLFRKLTKDVYRYLQKCVEGHKAFNISLAVKHNTITNGLKYSLATGN 239
Query: 426 WG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPA 476
WG Q + T+AGVSQVLN TYAST ++ K+AKPRQLHN+ WGM+CPA
Sbjct: 240 WGDQKKSMTTKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPA 299
Query: 477 ETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
ETPEGQACGLVKNLALM I++GS + P++EFLEEWG E+ E
Sbjct: 300 ETPEGQACGLVKNLALMATISVGSLSAPVIEFLEEWGLESLE 341
>gi|55273999|gb|AAV48870.1| RNA polymerase II second largest subunit [Climacodon
septentrionalis]
Length = 886
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/347 (55%), Positives = 247/347 (71%), Gaps = 15/347 (4%)
Query: 185 VFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEI 244
VF K QP+ +++AE+ S E + S V + R + S G + AT+PYI+ +I
Sbjct: 1 VFAKAQPSPVSFLAEIRSAVEKGGKTISQFQVKLYHRNQER--SMGNVLKATIPYIKVDI 58
Query: 245 PIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT 300
PI ++FRALG +D DILEHICYD QD QM+E+L+P +++ F IQ+++ +IG RG T
Sbjct: 59 PIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREIALDFIGNRGTT 118
Query: 301 VGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDH 360
G+ RE+ ++YA+EILQKEMLPH+ + E+KKAY+FG+ IHRLLL AL RR DDRDH
Sbjct: 119 TGLNRERRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYRIHRLLLAALERRDLDDRDH 178
Query: 361 YGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYS 420
+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ NL A+K TIT GLKYS
Sbjct: 179 FGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYS 238
Query: 421 LATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWG 471
LATGNWG Q +AGVSQVLN TYAST ++ K+AKPRQLHN+ WG
Sbjct: 239 LATGNWGDQKKMMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWG 298
Query: 472 MMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
M+CPAETPEGQACGLVKNL+LM I++GS + P++EFLEEWG E+ E
Sbjct: 299 MVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLE 345
>gi|45545307|gb|AAS67501.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Candida glabrata]
Length = 885
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/361 (54%), Positives = 260/361 (72%), Gaps = 17/361 (4%)
Query: 171 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSG 230
VL AQE+ + N V VFKK P+ ++VAE+ S E +R ST+ V + R S SS
Sbjct: 2 VLHAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGRES----SSA 57
Query: 231 QYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQN 290
+ I ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+E+L+P +E+ F IQ+
Sbjct: 58 RTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQD 117
Query: 291 QQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLL 346
++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ + E++KA++ G++I+RLL
Sbjct: 118 RETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLL 177
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQF 406
LCAL R+ +DDRDH+G KRLDLAGPLL LF+TLFRKLT D+ Y+Q+ V+ D N++
Sbjct: 178 LCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQRTVEEANDFNMKL 237
Query: 407 AIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSW 457
AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 238 AINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDG 297
Query: 458 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ PI+ FL EWG E
Sbjct: 298 KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGADPMPIITFLSEWGMEPL 357
Query: 518 E 518
E
Sbjct: 358 E 358
>gi|55583696|gb|AAV53367.1| RNA polymerase II second largest subunit [Phyllotopsis sp. MB35]
Length = 889
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/342 (56%), Positives = 247/342 (72%), Gaps = 15/342 (4%)
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
QP+ ++AE+ S E + S V M R + S G + AT+PYI+ +IPI ++
Sbjct: 2 QPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQER--SLGNVMKATIPYIKVDIPIWVV 59
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
FR LG +D DILEHICYD QD QM+E+L+P +++ F IQ+++ +IG RG T G++R
Sbjct: 60 FRGLGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLSR 119
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
E+ I+YA+EILQKEMLPHV + E+KKAY+FG++IHRLLL AL RR DDRDH+G KR
Sbjct: 120 ERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKR 179
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGN 425
LDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ NL A+K +TIT GLKYSLATGN
Sbjct: 180 LDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGN 239
Query: 426 WG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPA 476
WG Q + ++AGVSQVLN TYAST ++ K+AKPRQLHN+ WGM+CPA
Sbjct: 240 WGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPA 299
Query: 477 ETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
ETPEGQACGLVKNLALM I++GS + P++EFLEEWG E+ E
Sbjct: 300 ETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLE 341
>gi|89274890|gb|ABD65886.1| RNA polymerase II second largest subunit, partial [Ganoderma
tsugae]
Length = 883
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/342 (56%), Positives = 248/342 (72%), Gaps = 15/342 (4%)
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
QP+ +++AE+ S E + S V + R+ + S G + AT+PYI+ +IPI ++
Sbjct: 2 QPSPISFLAEIRSAVEKGGKTISQFQVKLYHRSKER--SLGNVMKATIPYIKIDIPIWVV 59
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
FRALG +D DILEHICYD QD QM+E+L+P ++E F IQ+++ YIG RG T G+ R
Sbjct: 60 FRALGVISDRDILEHICYDMQDNQMLEMLKPCIDEGFVIQDREIALDYIGNRGTTTGLNR 119
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
E+ ++YA+EILQKEMLPHV + E+KKAY+FG++IHRLLL AL RR DDRDH+G KR
Sbjct: 120 ERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKR 179
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGN 425
LDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ N+ A+K TIT GLKYSLATGN
Sbjct: 180 LDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNISLAVKHNTITNGLKYSLATGN 239
Query: 426 WG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPA 476
WG Q + ++AGVSQVLN TYAST ++ K+AKPRQLHN+ WGM+CPA
Sbjct: 240 WGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPA 299
Query: 477 ETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
ETPEGQACGLVKNL+LM I++G+ + P++EFLEEWG E+ E
Sbjct: 300 ETPEGQACGLVKNLSLMSCISVGTLSAPVIEFLEEWGLESLE 341
>gi|45545351|gb|AAS67523.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Thamnolia vermicularis]
Length = 893
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/355 (54%), Positives = 258/355 (72%), Gaps = 14/355 (3%)
Query: 177 KMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHAT 236
+ + N V VFKK K +VAE+ S E +R S++ + + S+ G GQ I +T
Sbjct: 1 RSAANIVQVFKKSD-GKTPFVAEIRSAVEKGSRLISSMQIKLHSKGEGAKGGFGQTIKST 59
Query: 237 LPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ---- 292
LPYI++EIPI+I+FRALG +DEDIL HICYD DTQM+E+L+P +EEAF IQ+++
Sbjct: 60 LPYIKSEIPIVIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFVIQDREVALD 119
Query: 293 YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGR 352
+IGKRG + G+TR+K IKYA++I+QKE+LPH+ + ET+KA++ G+++HR+L ALGR
Sbjct: 120 FIGKRGNSQGITRDKRIKYARDIMQKELLPHISQVEGSETRKAFFLGYMVHRMLQVALGR 179
Query: 353 RAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKT 412
R DDRDH+G KRLDLAGPL+ GLFR LF KLT DV Y+QKCV++ ++ NL +K+ T
Sbjct: 180 RDPDDRDHFGKKRLDLAGPLMAGLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTT 239
Query: 413 ITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPR 463
+T GLKYSLATGNWG Q AA ++AGVSQVLN T+AST ++ K+AKPR
Sbjct: 240 LTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPR 299
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
QLHN+ WG++CPAETPEGQACGLVKNLALM +T+GS + PI++F+ + E E
Sbjct: 300 QLHNTHWGLVCPAETPEGQACGLVKNLALMCCVTVGSPSEPIIDFMVQRNMEILE 354
>gi|270304832|gb|ACZ71355.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
gi|343129080|gb|AEL88463.1| RNA polymerase II [Metzgeria pubescens]
Length = 223
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/223 (84%), Positives = 203/223 (91%), Gaps = 4/223 (1%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++N
Sbjct: 121 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEIN 180
Query: 404 LQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLT 446
L +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LT
Sbjct: 181 LAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLT 223
>gi|6606105|gb|AAF19065.1|AF107793_1 DNA-dependent RNA polymerase II RPB140, partial [Emericella
nidulans]
Length = 1009
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/365 (52%), Positives = 261/365 (71%), Gaps = 14/365 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VFKK P+ YVAE+ S E +R S + + + + + G
Sbjct: 1 SEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFGKGDSAKG 60
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
G I +TLPYI+ +IPI+I+FRALG +DEDIL HICYD DT M+E+L+P +EE F
Sbjct: 61 GFGPTIRSTLPYIKADIPIVIVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFV 120
Query: 288 IQNQQ----YIGKRGAT-VGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ+++ +I KRG++ + E+ ++YA+EI+QKE+LPH+ + ET+KA++ G+++
Sbjct: 121 IQDREVALDFIAKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFLGYMV 180
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLL CALGRR DDRDH+G KRLDLAGPLL LFR LF ++T D++ YVQ+CV++ +++
Sbjct: 181 HRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVESDREI 240
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------- 454
L +KA T+T GL+Y+LATGNWG Q AA +AGVSQVL+ TYAST ++
Sbjct: 241 YLNVGLKASTVTQGLRYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPI 300
Query: 455 -LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YIT+G+ + PI++F+ +
Sbjct: 301 GRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRN 360
Query: 514 TENFE 518
E E
Sbjct: 361 MEVLE 365
>gi|45120572|gb|AAO64666.2| RNA polymerase II subunit RPB2, partial [Lycoperdon pyriforme]
Length = 849
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/336 (57%), Positives = 245/336 (72%), Gaps = 15/336 (4%)
Query: 196 YVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGF 255
++AE+ S E + S V M R + S G + AT+PYI+ +IPI ++FR LG
Sbjct: 1 FLAEIRSAVERGGKTISQFQVKMFHRNQER--SLGNVMKATIPYIKVDIPIWVVFRGLGV 58
Query: 256 TADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKY 311
+D DILEHICYD QDTQM+E+L+P +++ F IQ+++ +IG RG T G++RE+ I+Y
Sbjct: 59 ISDRDILEHICYDMQDTQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLSRERRIRY 118
Query: 312 AKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 371
A+EILQKEMLPHV + E+KKAY+FG++IHRLLL AL RR DDRDH+G KRLDLAGP
Sbjct: 119 AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGP 178
Query: 372 LLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGN 430
LL LFR LFRKLT DV Y+QKCV+ K+ NL A+K +TIT GLKYSLATGNWG Q
Sbjct: 179 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKK 238
Query: 431 AAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQ 482
+ ++AGVSQVLN TYAST ++ K+AKPRQLHN+ WGM+CPAETPEGQ
Sbjct: 239 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 298
Query: 483 ACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
ACGLVKNLALM I++GS + P++EFLEEWG E+ E
Sbjct: 299 ACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLE 334
>gi|89274906|gb|ABD65894.1| RNA polymerase II second largest subunit, partial [Steccherinum
laeticolor]
Length = 556
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 249/350 (71%), Gaps = 14/350 (4%)
Query: 182 HVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIR 241
HVYVF K QP+ +++AE+ S E + S V + R + + G + AT+PYI+
Sbjct: 1 HVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYHRNTERS-QPGNVMKATIPYIK 59
Query: 242 TEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKR 297
+IPI ++FRALG +D DILEHICYD QD QM+E+L+P +++ F IQ+++ +IG R
Sbjct: 60 VDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNR 119
Query: 298 GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDD 357
G T G+ RE+ ++YA+EILQKEMLPH+ + E+KKAY+FG++IHRLLL AL RR DD
Sbjct: 120 GTTTGLNRERRLRYAQEILQKEMLPHISMKEGSESKKAYFFGYMIHRLLLAALERRDLDD 179
Query: 358 RDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGL 417
RDH+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ NL A+K TIT GL
Sbjct: 180 RDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVEMHKEFNLALAVKHNTITNGL 239
Query: 418 KYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNS 468
KYSLATGNWG Q + ++AGVSQVLN TYAST ++ K+AKPRQLHN
Sbjct: 240 KYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNH 299
Query: 469 QWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
WGM+ ETPEGQACGLVKNL+LM I++GS + P++EFLEEWG E+ E
Sbjct: 300 HWGMVXXXETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLE 349
>gi|156627827|gb|ABU88901.1| RNA polymerase II second largest subunit [Phymatotrichopsis
omnivora]
gi|156627829|gb|ABU88902.1| RNA polymerase II second largest subunit [Phymatotrichopsis
omnivora]
gi|156627831|gb|ABU88903.1| RNA polymerase II second largest subunit [Phymatotrichopsis
omnivora]
gi|156627833|gb|ABU88904.1| RNA polymerase II second largest subunit [Phymatotrichopsis
omnivora]
Length = 884
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/358 (52%), Positives = 262/358 (73%), Gaps = 14/358 (3%)
Query: 174 AQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI 233
AQE+ + N V VFKK P+ YVAE+ S E +R S++ + + S++ +GG + I
Sbjct: 1 AQERSAANIVQVFKKALPSPTPYVAEIRSAVEKGSRLISSMQIKLYSKSDPRGGYNAT-I 59
Query: 234 HATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ- 292
+TLPYI+++IPI+I+FRALG +DEDIL H+CYD DT+M+E+++P +EEAF IQ+++
Sbjct: 60 KSTLPYIKSDIPIVIVFRALGVVSDEDILNHVCYDRNDTEMLEMMKPCIEEAFVIQDREV 119
Query: 293 ---YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCA 349
+IGKRG + GV +EK I+YA++I+QKE+LPH+ + ET+KA++ G+++HR+L CA
Sbjct: 120 ALDFIGKRGNSQGVNKEKRIRYARDIMQKELLPHISQKEGSETRKAFFLGYMVHRMLQCA 179
Query: 350 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIK 409
L RR DDRDH+G KRLDLAGPLL LFR L+++LT +V Y++KCV+ K+ NL A+K
Sbjct: 180 LERREVDDRDHFGKKRLDLAGPLLAQLFRNLWKQLTKEVYKYLEKCVEGSKEFNLNLAVK 239
Query: 410 AKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLA 460
+ TIT GLKYSLATGNW Q AA ++AGVSQVLN T+AST ++ K+A
Sbjct: 240 SNTITTGLKYSLATGNWASQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIA 299
Query: 461 KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
KPRQLHN+ WG++CPAETPEGQACGLVKNLALM YIT+G+ PI++F+ + E E
Sbjct: 300 KPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYITVGTPGDPIVDFMAQRNMEFLE 357
>gi|300394776|gb|ADK11926.1| DNA-directed RNA polymerase II subunit two, partial [Athelia
rolfsii]
Length = 547
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/354 (54%), Positives = 248/354 (70%), Gaps = 15/354 (4%)
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATL 237
M+TNHVYVF K QP+ ++AE+ S E + S V M R + S G I AT+
Sbjct: 1 MATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMYHRNQER--SLGNVIKATI 58
Query: 238 PYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----Y 293
PYI+ +IPI I+FRALG +D DILEHICYD QDTQM+E+L+P ++E F IQ+++ +
Sbjct: 59 PYIKVDIPIXIVFRALGVISDRDILEHICYDMQDTQMLEMLKPCIDEGFVIQDREVALDF 118
Query: 294 IGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRR 353
IG RG T G++RE+ I+YA+EILQKEMLPH+ + E+KKAY+FG+++HRLLL A+ RR
Sbjct: 119 IGNRGTTTGLSRERRIRYAQEILQKEMLPHISMSEGSESKKAYFFGYMVHRLLLAAMERR 178
Query: 354 AEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTI 413
DDRDH+G KRLDLAGPLL LFR LFR LT DV Y+QKCV+ K+ NL A+K +TI
Sbjct: 179 ELDDRDHFGKKRLDLAGPLLANLFRMLFRXLTKDVYRYLQKCVETHKEFNLSLAVKHQTI 238
Query: 414 TGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQ 464
T GLKYSLATGNWG Q + ++AGVSQVLN TYAST ++ K+AKPRQ
Sbjct: 239 TNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQ 298
Query: 465 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LHN+ WGM+CP LVKNLALM I++GS + P++EFLEEWG E+ E
Sbjct: 299 LHNTHWGMVCPXXXXXXXXXXLVKNLALMSCISVGSQSAPVIEFLEEWGLESLE 352
>gi|270304998|gb|ACZ71437.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
Length = 223
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/223 (84%), Positives = 202/223 (90%), Gaps = 4/223 (1%)
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF I
Sbjct: 1 SGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVI 60
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
QNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHR
Sbjct: 61 QNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHR 120
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LLLCALGRRAEDDRDHYGNKRLDLAGPLLG LFR LFRKLT DVR Y+QKCVDNGK++NL
Sbjct: 121 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRMLFRKLTKDVRGYLQKCVDNGKEINL 180
Query: 405 QFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTY 447
+A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTY
Sbjct: 181 AYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTY 223
>gi|89274896|gb|ABD65889.1| RNA polymerase II second largest subunit, partial [Phaeolus
schweinitzii]
Length = 887
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/342 (55%), Positives = 244/342 (71%), Gaps = 15/342 (4%)
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
QP+ ++AE+ S E + S V M R + S G + AT+PYI+ +IPI +L
Sbjct: 2 QPSPINFLAEIRSAVEKGGKTISQFQVKMYHRNQER--SLGNVMKATIPYIKVDIPIWVL 59
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
FRALG +D DILEHICYD QD QM+ELL+P +++ F IQ+++ +IG RG T G+ R
Sbjct: 60 FRALGVISDRDILEHICYDMQDAQMLELLKPCIDDGFVIQDREVALDFIGNRGTTTGLNR 119
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
E+ ++YA+EILQKEMLPH+ + E+KKAY+FG+++HRLLL A+ R DDRDH+G KR
Sbjct: 120 ERRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYMVHRLLLAAMEREDLDDRDHFGKKR 179
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGN 425
LDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ NL A+K TIT GLKYSLATGN
Sbjct: 180 LDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLNLAVKHNTITNGLKYSLATGN 239
Query: 426 WG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPA 476
WG Q ++AGVSQVLN TYAST ++ K+AKPRQLHN+ WGM+CPA
Sbjct: 240 WGDQKRTMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPA 299
Query: 477 ETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
ETPEGQACGLVKNL+LM IT+G+ + P++EFLEEWG E+ E
Sbjct: 300 ETPEGQACGLVKNLSLMSCITVGTLSAPVIEFLEEWGLESLE 341
>gi|45120580|gb|AAO64681.2| RNA polymerase II subunit RPB2, partial [Stereum hirsutum]
Length = 801
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/336 (56%), Positives = 244/336 (72%), Gaps = 15/336 (4%)
Query: 196 YVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGF 255
++AE+ S E + S V M R K +SG I AT+PYI+ +IPI ++FRALG
Sbjct: 2 FLAEIRSAVEKGGKTISQFQVKMYHRNQDK--TSGNVIKATIPYIKVDIPIWVVFRALGV 59
Query: 256 TADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKY 311
+D DILEHICYD +D QM+E+L+P +++ F IQ+++ +IG RG T G++RE+ ++Y
Sbjct: 60 ISDRDILEHICYDMEDAQMLEMLKPCIDDGFVIQDREIALDFIGNRGTTTGLSRERRLRY 119
Query: 312 AKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 371
A+EILQKEMLPH+ + E+KKAY+FG++IHRLLL + RR DDRDH+G KRLDLAGP
Sbjct: 120 AQEILQKEMLPHISMSEGSESKKAYFFGYMIHRLLLAGMERRELDDRDHFGKKRLDLAGP 179
Query: 372 LLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGN 430
LL LFR LFRKLT DV Y+QKCV+ KD NL A+K TIT GLKYSLATGNWG Q
Sbjct: 180 LLANLFRMLFRKLTRDVYRYLQKCVETHKDFNLNLAVKHNTITNGLKYSLATGNWGDQKK 239
Query: 431 AAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQ 482
+ ++AGVSQVLN TYAST ++ K+AKPRQLHN+ WGM+CPAETPEGQ
Sbjct: 240 SMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 299
Query: 483 ACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
ACGLVKNL+LM I++GS + P+++FLEEWG E+ E
Sbjct: 300 ACGLVKNLSLMATISVGSLSLPVIDFLEEWGLESLE 335
>gi|120561243|gb|ABM27006.1| RNA polymerase II second largest subunit, partial [Zancudomyces
culisetae]
gi|363543580|gb|AEW26268.1| RPB2 [Zancudomyces culisetae]
Length = 899
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/350 (56%), Positives = 253/350 (72%), Gaps = 17/350 (4%)
Query: 182 HVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIR 241
H KK+ PN + Y AE+ S E +R ST+ ML + GG G+ I AT+PYIR
Sbjct: 1 HGVGVKKKIPNLH-YTAEIRSAMEGASRQASTL---MLKKFGRSGGGGGKGIQATIPYIR 56
Query: 242 TEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKR 297
+E+P++++FRALG A +DILEHICYD D++M+E + S+EEAF IQ+++ +IGKR
Sbjct: 57 SEVPVVVVFRALGTVAAKDILEHICYDSNDSEMVEEFKASIEEAFVIQDREVSLDFIGKR 116
Query: 298 GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDD 357
G TVGV REK IKYA+EILQKE LPHVGT ET+K Y+ G+++HRLL C L RR +DD
Sbjct: 117 GTTVGVNREKRIKYAREILQKEFLPHVGTQPHNETRKTYFLGYMVHRLLQCVLERRDQDD 176
Query: 358 RDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGL 417
RDHYG KRLDLAGPLL LFR LF+K+T D+ Y+QKC+++ ++ NL A+K+ TIT GL
Sbjct: 177 RDHYGRKRLDLAGPLLAMLFRNLFKKMTRDMTRYLQKCIESRREFNLSMALKSNTITAGL 236
Query: 418 KYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNS 468
KYSLATGNWG Q A +R GV+QVLN T+AST ++ K+AKPRQLHN+
Sbjct: 237 KYSLATGNWGDQKKAMQSRTGVAQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNT 296
Query: 469 QWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
WG++CPAETPEGQACGLVKNLALM +IT+GS + IL FLEEW EN E
Sbjct: 297 HWGLVCPAETPEGQACGLVKNLALMAHITVGSDSGSILMFLEEWAMENLE 346
>gi|6606125|gb|AAF19075.1|AF107803_1 DNA-dependent RNA polymerase II RPB140 [Curvularia brachyspora]
Length = 942
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/366 (53%), Positives = 260/366 (71%), Gaps = 17/366 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VF+K+Q ++AE+ S E R S+ + + A G
Sbjct: 1 SEKVLIAQERSAANIVQVFRKKQ-GPIPWIAEIRSAVEKGTRLISSFNIKWAENSLAGPG 59
Query: 228 S--SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA 285
G + +ATLPYI+ ++P+ I+FRALG +DE+IL HI YD DTQM+ELL+PS+EE
Sbjct: 60 KRIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVYDRTDTQMLELLKPSIEEG 119
Query: 286 FFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHI 341
+Q+++ +I KRGA G T+++ +K+A++I+Q+E LPH+ + +T+KAY+FG++
Sbjct: 120 SVVQDRETALDFIAKRGANSG-TKDRRLKFARDIMQREFLPHISQKEGQDTRKAYFFGYM 178
Query: 342 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD 401
IHRLL C LGRR EDDRDH+G KRLDLAGPL+ LFR LF KLT DV Y+Q+CV+N +D
Sbjct: 179 IHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDVYKYLQRCVENNQD 238
Query: 402 VNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------ 454
N+Q A+KA IT GLKYSLATGNWG Q AA +AGVSQVLN TYAST ++
Sbjct: 239 FNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTP 298
Query: 455 --LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEW 512
KLAKPRQLHNS WG++CPAETPEGQACGLVKNL+LM Y+++GS A PI++F+ +
Sbjct: 299 VGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSDASPIIDFMTQR 358
Query: 513 GTENFE 518
+ E
Sbjct: 359 NMQLLE 364
>gi|270304887|gb|ACZ71382.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
Length = 229
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/223 (83%), Positives = 202/223 (90%), Gaps = 4/223 (1%)
Query: 235 ATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ-- 292
ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF IQNQQ
Sbjct: 1 ATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVIQNQQVA 60
Query: 293 --YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCAL 350
YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHRLLLCAL
Sbjct: 61 LDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHRLLLCAL 120
Query: 351 GRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKA 410
GRRAEDDRDHYGNKRLDLAGPLLG LFR LFRKLT DVR Y+QKCVDNGK++NL +A+KA
Sbjct: 121 GRRAEDDRDHYGNKRLDLAGPLLGSLFRMLFRKLTKDVRGYLQKCVDNGKEINLAYAVKA 180
Query: 411 KTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
KTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 181 KTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 223
>gi|45545321|gb|AAS67508.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Cryphonectria parasitica]
Length = 941
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/365 (54%), Positives = 255/365 (69%), Gaps = 14/365 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VFKK QP+ Y AE+ S E +R S+ + + ++ G
Sbjct: 1 SEKVLIAQERSAANIVQVFKKAQPSPDLYQAEIRSALEKGSRLISSTTLKLKAKGETARG 60
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
GQ I ATLPY++ EIPI I+FRALG +DEDIL +CYD QDTQMME+LRP +EEAF
Sbjct: 61 GFGQTIQATLPYVKKEIPIAIVFRALGVISDEDILNAVCYDRQDTQMMEMLRPCIEEAFA 120
Query: 288 IQNQQ----YIGKRGAT-VGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ ++ YI KR + ++ + +K AKEILQKE+LPH+ + CET+KAY+ G++
Sbjct: 121 IQEREVALDYIAKRSNSGHSASKIQRMKNAKEILQKELLPHIAQTEGCETRKAYFLGYMT 180
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
H+LL CALGRR DDRDH+G KRLDLAGPLL LFR + +KLTGD+ +Y+++CV GK
Sbjct: 181 HKLLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRNIVKKLTGDMMAYMKRCVSEGKHF 240
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------- 454
+L I+ T+T GLKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 DLALGIRHSTLTNGLKYSLATGNWGEQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPI 300
Query: 455 -LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++GS A PI +F+ +
Sbjct: 301 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPIKDFMVQRN 360
Query: 514 TENFE 518
E E
Sbjct: 361 MEVLE 365
>gi|45120578|gb|AAO64677.2| RNA polymerase II subunit RPB2, partial [Henningsomyces candidus]
Length = 848
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/337 (56%), Positives = 248/337 (73%), Gaps = 15/337 (4%)
Query: 195 AYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALG 254
++AE+ S E + S V M ++ +G +SG + A++PYI+ +IPI ++FRALG
Sbjct: 1 GFLAEIRSAVEKGGKTISQFQVKMFHKS--EGKTSGGVMKASIPYIKVDIPIWVVFRALG 58
Query: 255 FTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIK 310
+D DILEHICYD QD Q++E+L+P +++ F IQ+++ +IG RG T G++R+K I+
Sbjct: 59 VISDRDILEHICYDMQDAQILEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLSRDKRIR 118
Query: 311 YAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 370
YA+EILQKEM+PHV + E+KKAY+FG++IHRLLL AL RR DDRDH+G KRLDLAG
Sbjct: 119 YAQEILQKEMIPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAG 178
Query: 371 PLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QG 429
PLL LFR LFRKL+ DV Y+QKCV+ K+ NL A+K +TIT GLKYSLATGNWG Q
Sbjct: 179 PLLANLFRMLFRKLSKDVYRYLQKCVEAQKEFNLALAVKHQTITNGLKYSLATGNWGDQK 238
Query: 430 NAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEG 481
+ ++AGVSQVLN TYAST ++ K+AKPRQLHN+ WGM+CPAETPEG
Sbjct: 239 KSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEG 298
Query: 482 QACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
QACGLVKNLALM I++GS + P++EFLEEWG E+ E
Sbjct: 299 QACGLVKNLALMACISVGSLSAPVIEFLEEWGLESLE 335
>gi|45120526|gb|AAS55048.1| RNA polymerase II second largest subunit [Heterobasidion annosum]
Length = 515
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/335 (56%), Positives = 244/335 (72%), Gaps = 15/335 (4%)
Query: 197 VAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFT 256
+AE+ S E + S V M R K +SG + AT+PYI+ +IPI ++FRALG
Sbjct: 1 LAEIRSAVEKGGKTISQFQVKMYHRGQEK--ASGNVMKATIPYIKVDIPIWVVFRALGVI 58
Query: 257 ADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYA 312
+D DILEHICYD QD+QM+E+L+P +++ F IQ+++ +IG RG T G++R++ ++YA
Sbjct: 59 SDRDILEHICYDMQDSQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLSRDRRVRYA 118
Query: 313 KEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL 372
+EILQKEMLPH+ + E+KKAY+FG++IHRL+L A+ RR DDRDH+G KRLDLAGPL
Sbjct: 119 QEILQKEMLPHISMSEGSESKKAYFFGYMIHRLVLAAMERRELDDRDHFGKKRLDLAGPL 178
Query: 373 LGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNA 431
L LFR LFRKLT DV Y+QKCV+ KD NL A+K TIT GLKYSLATGNWG Q +
Sbjct: 179 LANLFRMLFRKLTRDVYRYLQKCVETHKDFNLXLAVKHNTITNGLKYSLATGNWGDQKKS 238
Query: 432 AGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQA 483
+AGVSQVLN TYAST ++ K+AKPRQLHN+ WGM+CPAETPEGQA
Sbjct: 239 MAAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQA 298
Query: 484 CGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
CGLVKNLALM I++GS + P++EFLEEWG E+ E
Sbjct: 299 CGLVKNLALMSTISVGSLSAPVIEFLEEWGLESLE 333
>gi|6606127|gb|AAF19076.1|AF107804_1 DNA-dependent RNA polymerase II RPB140 [Pleospora tarda]
Length = 942
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/366 (53%), Positives = 260/366 (71%), Gaps = 17/366 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VF+K+Q ++AE+ S E R S+ + + A G
Sbjct: 1 SEKVLIAQERSAANIVQVFRKKQ-GPIPWIAEIRSAVEKGTRLISSFNIKWAENSLAGHG 59
Query: 228 SS--GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA 285
G + +ATLPYI+ ++P+ I+FRALG +DE+IL HI YD DTQM+ELL+PS+EE
Sbjct: 60 KRIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVYDRTDTQMLELLKPSIEEG 119
Query: 286 FFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHI 341
+Q+++ +I KRGA G T+++ +K+A++I+Q+E LPH+ + +T+KAY+FG++
Sbjct: 120 SVVQDRETALDFIAKRGANSG-TKDRRLKFARDIMQREFLPHISQKEGQDTRKAYFFGYM 178
Query: 342 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD 401
IHRLL C LGRR EDDRDH+G KRLDLAGPL+ LFR LF KLT DV Y+Q+CV+N +D
Sbjct: 179 IHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDVYKYLQRCVENNQD 238
Query: 402 VNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------ 454
N+Q A+KA IT GLKYSLATGNWG Q AA +AGVSQVLN TYAST ++
Sbjct: 239 FNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTP 298
Query: 455 --LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEW 512
KLAKPRQLHNS WG++CPAETPEGQACGLVKNL+LM Y+++GS A PI++F+ +
Sbjct: 299 VGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSDASPIIDFMTQR 358
Query: 513 GTENFE 518
+ E
Sbjct: 359 NMQLLE 364
>gi|89274892|gb|ABD65887.1| RNA polymerase II second largest subunit, partial [Irpex lacteus]
Length = 548
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/344 (55%), Positives = 245/344 (71%), Gaps = 15/344 (4%)
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
K QP+ ++AE+ S E + S V + R + S G + AT+PYI+ +IPI
Sbjct: 1 KAQPSPINFLAEIRSAVEKGGKTISQFQVKLYHRNQER--SLGNVMKATIPYIKVDIPIW 58
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGV 303
++FRALG +D DILEHICYD QD QM+E+L+P +++ F IQ+++ +IG RG T G+
Sbjct: 59 VVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGL 118
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
RE+ ++YA+EILQKEMLPH+ + E+KKAY+FG++IHRL+L AL RR DDRDH+G
Sbjct: 119 NRERRLRYAQEILQKEMLPHISMAEGAESKKAYFFGYMIHRLMLAALERRDLDDRDHFGK 178
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLAT 423
KRLDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ NL A+K TIT GLKYSLAT
Sbjct: 179 KRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLAT 238
Query: 424 GNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMC 474
GNWG Q + +AGVSQVLN TYAST ++ K+AKPRQLHN WGM+C
Sbjct: 239 GNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCDTPLGREGKIAKPRQLHNHHWGMVC 298
Query: 475 PAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PAETPEGQACGLVKNL+LM I++GS + P++EFLEEWG E+ E
Sbjct: 299 PAETPEGQACGLVKNLSLMSCISVGSISAPVIEFLEEWGLESLE 342
>gi|45545311|gb|AAS67503.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Candida parapsilosis]
Length = 892
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/358 (53%), Positives = 260/358 (72%), Gaps = 16/358 (4%)
Query: 174 AQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI 233
AQE+ + N V VFKK P+ ++VAE+ S E +R S++ + + R + SS + I
Sbjct: 5 AQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRD--EKSSSARTI 62
Query: 234 HATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ- 292
ATLPYI+ +IPI+I+FRALG D DILEHICYD D QM+E+L+P +EE F IQ ++
Sbjct: 63 KATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGFVIQEREV 122
Query: 293 ---YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCA 349
+IG+RG +G+ REK I+YAK+ILQKE+LP++ + ET+KA++ G++++RLLLCA
Sbjct: 123 ALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVNRLLLCA 181
Query: 350 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIK 409
L R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +Y+Q+CV+N K+ NL A+K
Sbjct: 182 LERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENDKEFNLTLAVK 241
Query: 410 AKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLA 460
++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST ++ K+A
Sbjct: 242 SQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIA 301
Query: 461 KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
KPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ + PI FL +WG E E
Sbjct: 302 KPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPISSFLRDWGLEPLE 359
>gi|270304933|gb|ACZ71405.1| RNA polymerase II second largest subunit [Metzgeria furcata]
Length = 222
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/218 (84%), Positives = 199/218 (91%), Gaps = 4/218 (1%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++N
Sbjct: 121 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEIN 180
Query: 404 LQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQV 441
L +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQV
Sbjct: 181 LAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQV 218
>gi|45545329|gb|AAS67512.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Diploschistes muscorum]
Length = 901
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/364 (52%), Positives = 257/364 (70%), Gaps = 15/364 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V V+K R ++ Y+AE+ S E R S++ V SR K
Sbjct: 1 SEKVLIAQERSAANIVQVYK-RSDDRIPYLAEIRSAVEKGTRLISSMSVKYHSRKDDKK- 58
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
S G I TLPY++ EI + I+FRALG +DEDIL HIC+D +DTQMME+L+P +EEAF
Sbjct: 59 SFGSSIKVTLPYVKEEIAVAIVFRALGVVSDEDILNHICFDRRDTQMMEMLKPCIEEAFV 118
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
+Q+++ +IGKR +G R+K I++A++I+QKE+LPH+ + ET+KA++ G+++H
Sbjct: 119 VQDREVALDHIGKRSNALGQPRDKRIRHARDIMQKELLPHISQSEGSETRKAFFLGYMVH 178
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
R+L ALGRR DDRDH+G KRLDLAGPL+ LFR+LF +LT DV Y+QKC++ +D N
Sbjct: 179 RMLQVALGRREPDDRDHFGKKRLDLAGPLMASLFRSLFNRLTKDVLKYLQKCIEGNRDFN 238
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
+ +K+ T+T GLKYSLATGNW Q AA +AGVSQVLN T+AST ++
Sbjct: 239 IALGVKSTTLTNGLKYSLATGNWSEQKKAAQGKAGVSQVLNRYTFASTLSHLRRTNTPLG 298
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YIT+GS PI+EF+ +
Sbjct: 299 RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGSPGEPIIEFMVQRNM 358
Query: 515 ENFE 518
E E
Sbjct: 359 EVLE 362
>gi|270304842|gb|ACZ71360.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
Length = 220
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/219 (84%), Positives = 199/219 (90%), Gaps = 4/219 (1%)
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF I
Sbjct: 1 SGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVI 60
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
QNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHR
Sbjct: 61 QNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHR 120
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LLLCALGRRAEDDRDHYGNKRLDLAGPLLG LFR LFRKLT DVR Y+QKCVDNGK++NL
Sbjct: 121 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRMLFRKLTKDVRGYLQKCVDNGKEINL 180
Query: 405 QFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLN 443
+A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN
Sbjct: 181 AYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLN 219
>gi|89274908|gb|ABD65895.1| RNA polymerase II second largest subunit, partial [Trametes
versicolor]
Length = 518
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/337 (56%), Positives = 242/337 (71%), Gaps = 15/337 (4%)
Query: 195 AYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALG 254
+++AE+ S E + S V + R+ + S G + AT+PYI+ +IPI ++FRALG
Sbjct: 2 SFLAEIRSAVEKGGKTISQFQVKLYHRSQER--SLGNVMKATIPYIKVDIPIWVVFRALG 59
Query: 255 FTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIK 310
+D DILEHICYD QD QM+E+L+P ++E F IQ+++ YIG RG T G+ RE+ ++
Sbjct: 60 VISDRDILEHICYDMQDNQMLEMLKPCIDEGFVIQDREIALDYIGNRGTTTGLNRERRLR 119
Query: 311 YAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 370
YA+EILQKEMLPHV + E+KKAY+FG++IHRLLL A RR DDRDH+G KRLDLAG
Sbjct: 120 YAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAAFERRDLDDRDHFGKKRLDLAG 179
Query: 371 PLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QG 429
PLL LFR LFRKLT DV Y+QKCV+ K+ L A+K TIT GLKYSLATGNWG Q
Sbjct: 180 PLLANLFRMLFRKLTKDVYRYLQKCVETHKEFQLGLAVKHNTITNGLKYSLATGNWGDQK 239
Query: 430 NAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEG 481
++AGVSQVLN TYAST ++ K+AKPRQLHN+ WGM+CPAETPEG
Sbjct: 240 KTMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEG 299
Query: 482 QACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
QACGLVKNL+LM I++GS + P++EFLEEWG E+ E
Sbjct: 300 QACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLE 336
>gi|55583692|gb|AAV53365.1| RNA polymerase II second largest subunit [Hygrophoropsis
aurantiaca]
Length = 863
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/304 (60%), Positives = 232/304 (76%), Gaps = 13/304 (4%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
S G + AT+PYIR +IPI ++FRALG +D DILEHICYD QD QM+E+L+P +++ F
Sbjct: 8 SLGNVMKATIPYIRVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFV 67
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ+++ +IG RG T G++RE+ I+YA+EILQKEMLPHV + E+KKAY+FG++IH
Sbjct: 68 IQDREVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIH 127
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLL AL RR DDRDH+G KRLDLAGPLL LFR LF+KLT DV Y+QKCV+ K+ N
Sbjct: 128 RLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFN 187
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW----- 457
L A+K +TIT GLKYSLATGNWG Q + ++AGVSQVLN TYAST ++
Sbjct: 188 LSLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLG 247
Query: 458 ---KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM I++GS + P++EFLEEWG
Sbjct: 248 REGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGL 307
Query: 515 ENFE 518
E+ E
Sbjct: 308 ESLE 311
>gi|59894383|gb|AAX11028.1| RNA polymerase II subunit [Zignoella ovoidea]
Length = 595
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/362 (52%), Positives = 253/362 (69%), Gaps = 13/362 (3%)
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KVLIAQ++ + N V VFKK + +YVAE+ S E +R S++ + + SR G
Sbjct: 1 KVLIAQKRSAANIVSVFKKPAGSNVSYVAEIRSALEKGSRLISSLQMRLYSRADNTSGRM 60
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
+ TLPY++ EIPI I+FRALG +DEDIL HICYD D+QM+E+LRP +EEAF IQ
Sbjct: 61 ANTVRTTLPYVKDEIPIAIVFRALGIVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCIQ 120
Query: 290 NQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRL 345
+++ +IGKRG T G+ R IK A+++LQKEMLPH+ + CET+KA++ G+++H+L
Sbjct: 121 DREVALDFIGKRGNTHGLARGNRIKAARDVLQKEMLPHISQSEGCETRKAFFLGYMVHKL 180
Query: 346 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQ 405
L CALGRR DDRDH+G KRLDLAGPLL LFR + RK+T D+++YV++CV+ K +L
Sbjct: 181 LQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRKMTTDLQAYVKRCVNENKHFSLA 240
Query: 406 FAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LS 456
IK +T LKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 LGIKPSQLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRD 300
Query: 457 WKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+L+ Y+++G+ + PI+EF+ E
Sbjct: 301 GKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLLCYVSVGTPSEPIVEFMISRNMEV 360
Query: 517 FE 518
E
Sbjct: 361 LE 362
>gi|330040234|ref|XP_003239811.1| DNA-directed RNA polymerase II second largest subunit [Cryptomonas
paramecium]
gi|327206736|gb|AEA38913.1| DNA-directed RNA polymerase II second largest subunit [Cryptomonas
paramecium]
Length = 1209
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 217/568 (38%), Positives = 320/568 (56%), Gaps = 71/568 (12%)
Query: 20 EAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI----------EIRPESQHN 69
+ W ++S+YFEE +++QQL+SF++F QN MQ+IVD+ I + + N
Sbjct: 11 DTWPLVSSYFEENSIIKQQLESFNDFVQNKMQDIVDDLPPIVVSYKVDKLTDFKENFLQN 70
Query: 70 PGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE 129
+ +++LSKP E DG TL ARLR+L+YS+PLY D++ + ++ E+
Sbjct: 71 MKKILRLGQLHLSKPTFIEEDGVIHTLLPNEARLRSLSYSSPLYCDISVTTVNVTNEHEK 130
Query: 130 -----------------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVL 172
+PIM++S +C L + L LGEC D GGYFIINGSEKV+
Sbjct: 131 ERELNFKQEKQKILLGRIPIMIKSRFCILDKLLPMTLQNLGECNLDLGGYFIINGSEKVI 190
Query: 173 IAQEKMSTNHVYVFKKRQPN-----------KYAYVAEVCSMAESQNRPPSTIFVPML-- 219
+AQEKM+ N+VYVF+K++ N K + AE S++E PS + +
Sbjct: 191 VAQEKMAWNYVYVFEKKKENNSVDKSFFLDLKNLFFAECRSISEFGKWSPSLTIIKICLN 250
Query: 220 ---------SRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQ 270
S + YI LPY ++++P+ +F+ALGF + +I+ +ICYD
Sbjct: 251 KFRKKKIAKKENSFSHFTGKFYIRVVLPYFKSDVPVTWIFKALGFEDETEIIPYICYDNT 310
Query: 271 DTQMMELLRPSLEEAFFI----QNQQYIGKRGATVGVTREKM--------IKYAKEILQK 318
+ ++EL+R L++ F+ +N + + ++ + + + I+YA EILQ+
Sbjct: 311 NENLIELVRNILKDDHFVPDNLKNDCFRLDQETSLALIGQHIFKASHGTRIRYAYEILQR 370
Query: 319 EMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 378
E LPHVG G E +K ++FG+++++LLL LG + DDRDHYG KRLD PLL LFR
Sbjct: 371 EFLPHVGIGQGFELRKGFFFGYMVNKLLLVQLGNKKVDDRDHYGYKRLDTVSPLLSVLFR 430
Query: 379 TLFRKLTGDVRSYVQKCVDNGKDV-NLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAG 437
L K T D+R ++K + K+ + K IT G+ YSLATGNW N + G
Sbjct: 431 QLVNKATKDLRMSLEKKTNLEKNTFQISDIFKFNLITTGMFYSLATGNWST-NGQTMKTG 489
Query: 438 VSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 489
VSQVLN + Y ST ++ KL KPRQLHN+ WG++CP ETPEG +CGLVKN
Sbjct: 490 VSQVLNRINYMSTLSHLRKINSTGINVSKLTKPRQLHNTYWGLICPVETPEGHSCGLVKN 549
Query: 490 LALMVYITIGSAAYPILEFLEEWGTENF 517
LA+ YIT+GS++ P+ EFLEE +NF
Sbjct: 550 LAISAYITLGSSSMPVFEFLEELKIKNF 577
>gi|45120568|gb|AAO64656.2| RNA polymerase II subunit RPB2, partial [Echinodontium tinctorium]
Length = 871
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/336 (56%), Positives = 242/336 (72%), Gaps = 15/336 (4%)
Query: 196 YVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGF 255
++AE+ S E + S V M R+ K +SG I AT+PYI+ +IPI ++FRALG
Sbjct: 4 FLAEIRSAVEKSGKTISQFQVKMFHRSQEK--TSGNVIKATIPYIKVDIPIWVVFRALGV 61
Query: 256 TADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKY 311
+D DILEHICYD D+ M+E+L+P +++ F IQ++ +IG RG T G++RE+ I+Y
Sbjct: 62 ISDRDILEHICYDMSDSPMLEMLKPCIDDGFVIQDRDIALDFIGNRGTTTGLSRERRIRY 121
Query: 312 AKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 371
A+EILQKEMLPHV + E++KAY+FG++IHRLLL A+ RR DDRDH+G KRLDLAGP
Sbjct: 122 AQEILQKEMLPHVSMSEGSESRKAYFFGYMIHRLLLAAMERRELDDRDHFGKKRLDLAGP 181
Query: 372 LLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGN 430
LL LFR LFRKLT DV ++QKCV+ K+ NL AIK TIT GLKYSLATGNWG Q
Sbjct: 182 LLANLFRMLFRKLTRDVYRHLQKCVETHKEFNLNLAIKHTTITNGLKYSLATGNWGDQKK 241
Query: 431 AAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQ 482
A +AGVSQVLN TYAST ++ K+AKPRQLHN+ WGM+CPAETPEGQ
Sbjct: 242 AMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 301
Query: 483 ACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
ACGLVKNL+LM I++GS + I++FLEEWG E+ E
Sbjct: 302 ACGLVKNLSLMACISVGSTSGTIVDFLEEWGLESLE 337
>gi|67904266|ref|XP_682389.1| hypothetical protein AN9120.2 [Aspergillus nidulans FGSC A4]
gi|40742763|gb|EAA61953.1| hypothetical protein AN9120.2 [Aspergillus nidulans FGSC A4]
Length = 1028
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/361 (51%), Positives = 257/361 (71%), Gaps = 14/361 (3%)
Query: 172 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ 231
+IAQE+ + N V VFKK P+ YVAE+ S E +R S + + + + + G G
Sbjct: 1 MIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFGKGDSAKGGFGP 60
Query: 232 YIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ 291
I +TLPYI+ +IPI+I+FRALG +DEDIL HICYD DT M+E+L+P +EE F IQ++
Sbjct: 61 TIRSTLPYIKADIPIVIVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDR 120
Query: 292 Q----YIGKRGAT-VGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLL 346
+ +I KRG++ + E+ ++YA+EI+QKE+LPH+ + ET+KA++ G+++HRLL
Sbjct: 121 EVALDFIAKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFLGYMVHRLL 180
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQF 406
CALGRR DDRDH+G KRLDLAGPLL LFR LF ++T D++ YVQ+CV++ +++ L
Sbjct: 181 QCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVESDREIYLNV 240
Query: 407 AIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSW 457
+KA T+T GL+Y+LATGNWG Q AA +AGVSQVL+ TYAST ++
Sbjct: 241 GLKASTVTQGLRYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDG 300
Query: 458 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YIT+G+ + PI++F+ + E
Sbjct: 301 KIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVL 360
Query: 518 E 518
E
Sbjct: 361 E 361
>gi|6606121|gb|AAF19073.1|AF107801_1 DNA-dependent RNA polymerase II RPB140 [Stagonosporopsis
cucurbitacearum]
Length = 940
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/356 (53%), Positives = 256/356 (71%), Gaps = 16/356 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VF+K+Q ++AE+ S E R S+ + + A G
Sbjct: 1 SEKVLIAQERSAANIVQVFRKKQ-GPIPWIAEIRSAVEKGTRLISSFNIKWAENSLASGK 59
Query: 228 S-SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
G + +ATLPYI+ ++P+ I+FR+LG +DE+IL HI YD DTQM+ELL+PS+EE
Sbjct: 60 RMPGPFAYATLPYIKADVPMAIVFRSLGIVSDEEILGHIVYDRTDTQMLELLKPSIEEGS 119
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
+Q+++ +I +RGAT G T+++ +K+A++I+Q+E LPH+ + +T+KAY+FG++I
Sbjct: 120 VVQDRESALDFIARRGATQG-TKDRRLKFARDIMQREFLPHISQREGQDTRKAYFFGYMI 178
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HR+L C LGRR EDDRDH+G KRLDLAGPL+ LFR LF KLT DV Y+Q+CV+N D
Sbjct: 179 HRMLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDVYKYLQRCVENNSDF 238
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------- 454
N+Q A+KA IT GLKYSLATGNWG Q AA +AGVSQVLN TYAST ++
Sbjct: 239 NVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPV 298
Query: 455 -LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFL 509
KLAKPRQLHNS WG++CPAETPEGQACGLVKNL+LM Y+++GS A PI +F+
Sbjct: 299 GRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSDATPIADFM 354
>gi|270304828|gb|ACZ71353.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
Length = 219
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/218 (84%), Positives = 198/218 (90%), Gaps = 4/218 (1%)
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF I
Sbjct: 2 SGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVI 61
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
QNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHR
Sbjct: 62 QNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHR 121
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LLLCALGRRAEDDRDHYGNKRLDLAGPLLG LFR LFRKLT DVR Y+QKCVDNGK++NL
Sbjct: 122 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRMLFRKLTKDVRGYLQKCVDNGKEINL 181
Query: 405 QFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVL 442
+A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVL
Sbjct: 182 AYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVL 219
>gi|59894429|gb|AAX11051.1| RNA polymerase II subunit [Strattonia carbonaria]
Length = 606
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/370 (52%), Positives = 253/370 (68%), Gaps = 14/370 (3%)
Query: 163 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRT 222
FIINGSEKVLIAQE+ + N V VFKK +Y AE+ S E +R S++ + + ++
Sbjct: 1 FIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMRLHTKA 60
Query: 223 SAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSL 282
G + TLPY++ E+ + I+FRALG +DEDIL HICYD +DTQM+E LRP +
Sbjct: 61 DNAKGRLANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCI 120
Query: 283 EEAFFIQNQQ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
EEAF IQ+++ YIGKRG G R I+ AK++LQKEMLPH+ + CET+KA++
Sbjct: 121 EEAFCIQDREIALDYIGKRGNGNTGQNRMNRIRAAKDLLQKEMLPHISQTEGCETRKAFF 180
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++H+LL C LGRR DDRDH+G KRLDLAGPLL LFR + R++T D+ Y+++C+D
Sbjct: 181 LGYMVHKLLQCVLGRRDVDDRDHFGKKRLDLAGPLLAKLFRGIVRRITQDLMQYMKRCID 240
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-- 454
K L IKA T+T LKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 GNKHFTLALGIKAGTLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRR 300
Query: 455 ------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM YI++G+ A PI+EF
Sbjct: 301 TNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYISVGTNADPIIEF 360
Query: 509 LEEWGTENFE 518
+ E E
Sbjct: 361 MIARNMEVLE 370
>gi|270304994|gb|ACZ71435.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
Length = 218
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/218 (84%), Positives = 198/218 (90%), Gaps = 4/218 (1%)
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF I
Sbjct: 1 SGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVI 60
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
QNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHR
Sbjct: 61 QNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHR 120
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LLLCALGRRAEDDRDHYGNKRLDLAGPLLG LFR LFRKLT DVR Y+QKCVDNGK++NL
Sbjct: 121 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRMLFRKLTKDVRGYLQKCVDNGKEINL 180
Query: 405 QFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVL 442
+A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVL
Sbjct: 181 AYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVL 218
>gi|45545315|gb|AAS67505.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Cenococcum geophilum]
Length = 935
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/364 (52%), Positives = 258/364 (70%), Gaps = 15/364 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VF+K+Q + AE+ S E +R ST + +
Sbjct: 1 SEKVLIAQERSAANIVQVFRKKQ-GPIPWTAEIRSAVEKGSRLISTFNIKWAESSLIAKR 59
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
+ G + +A LPYIR ++P+ ++FRALG +DEDIL HI YD DTQM+ELL+PS+EE
Sbjct: 60 APGPFAYAILPYIRADVPMSVVFRALGVVSDEDILNHIVYDRNDTQMLELLKPSIEEGSM 119
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ+++ +I KRG++ G T++K +KYA++I+Q+E LPH+ + +T+KA++ G++IH
Sbjct: 120 IQDRENALDWIAKRGSSTG-TKDKRLKYARDIMQREFLPHISQKEGQDTRKAFFLGYMIH 178
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLL C LGRR EDDRDH+G KRLDLAGPL+ LFR LF KLT DV Y+QKCV+N ++ +
Sbjct: 179 RLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFIKLTRDVYKYLQKCVENNQEFS 238
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
+Q A+KA IT GLKYSLATGNWG Q AA ++AGVSQVLN TYAST ++
Sbjct: 239 IQMAVKASLITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPVG 298
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++GS + PI +F+ +
Sbjct: 299 RDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSESTPITDFMSQRNM 358
Query: 515 ENFE 518
E E
Sbjct: 359 ELLE 362
>gi|45545343|gb|AAS67519.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Phragmidium sp. MB]
Length = 931
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 203/364 (55%), Positives = 264/364 (72%), Gaps = 13/364 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+M+ NHV V+ K P+ +++ E+ S E ++ S++ V M A+
Sbjct: 1 SEKVLIAQERMAANHVCVYAKAAPSPVSFLCEIRSAVEKGSKTISSMQVKMYGGHKAEKA 60
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
G I TLPYIR ++PI+++FRALG D++IL+HICYD D M+E+L+P LE++F
Sbjct: 61 GGGATIKTTLPYIRNDVPIVVVFRALGIIPDKEILDHICYDRNDIGMLEMLKPCLEDSFP 120
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ Q+ +IG+RG + G++RE+ ++YA+EILQKEMLPH+ + + KKAY+FG+++H
Sbjct: 121 IQEQEVALDFIGRRGTSTGLSRERRLQYAEEILQKEMLPHISMSEGQQGKKAYFFGYMVH 180
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLL AL RR DDRDH+G KRLDLAGPLL LFR LFRKLT DV ++QKCV+ K N
Sbjct: 181 RLLLAALDRRDLDDRDHFGKKRLDLAGPLLASLFRILFRKLTKDVYRHLQKCVEMQKPFN 240
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
L A+K+ TIT GLKYSLATGNWG Q A +AGVSQVLN T+AST ++
Sbjct: 241 LNAAVKSNTITNGLKYSLATGNWGDQKKAMQAKAGVSQVLNRYTFASTLSHLRRCNTPIG 300
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHNS WGM+CPAETPEGQACGLVKNLALM YI++GS + PI+EFLEEWG
Sbjct: 301 RDGKIAKPRQLHNSHWGMVCPAETPEGQACGLVKNLALMSYISVGSPSAPIVEFLEEWGM 360
Query: 515 ENFE 518
E+ +
Sbjct: 361 ESLD 364
>gi|55831373|gb|AAV66545.1| RNA polymerase II second largest subunit [Fomitiporia mediterranea]
Length = 898
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/334 (55%), Positives = 241/334 (72%), Gaps = 15/334 (4%)
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
AE+ S E + S V M R + +SG + AT+PYI+ +IPI ++FRALG +
Sbjct: 1 AEIRSAVEQGGKTISQFQVKMYHRGQER--ASGSVMKATIPYIKVDIPIWVVFRALGVIS 58
Query: 258 DEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAK 313
D DILEHIC+D D+ M+E+L+P +++ F IQ+++ +IG RG G+ R+K ++YA+
Sbjct: 59 DRDILEHICFDMNDSSMLEMLKPCIDDGFVIQDREVALDFIGNRGTATGLNRDKRLRYAQ 118
Query: 314 EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 373
EILQKEMLPH+ + E+KKAY+FG++IHRLLL AL RR DDRDH+G KRLDLAGPLL
Sbjct: 119 EILQKEMLPHISMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLL 178
Query: 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAA 432
GLFR LFRKLT DV Y+QKCV+ K+ N+ AIK +T+T GLKYSLATGNWG Q A
Sbjct: 179 TGLFRMLFRKLTKDVYRYLQKCVETHKEFNINMAIKTQTLTNGLKYSLATGNWGDQKKAM 238
Query: 433 GTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQAC 484
++AGVSQVLN TYAST ++ K+AKPRQLHN+ WGM+CPAETPEGQAC
Sbjct: 239 SSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQAC 298
Query: 485 GLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GLVKNLALM I++GS + P+++FLEEWG E E
Sbjct: 299 GLVKNLALMAVISVGSVSGPVIDFLEEWGLETLE 332
>gi|6606101|gb|AAF19063.1|AF107791_1 DNA-dependent RNA polymerase II RPB140 [Chaetomium elatum]
Length = 934
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/365 (52%), Positives = 255/365 (69%), Gaps = 14/365 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VFKK +Y AE+ S E +R S++ + + S+ S + G
Sbjct: 1 SEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMKLHSKGSPEKG 60
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
+ TLPY+R ++ + I+FRALG +DEDIL HICYD DTQM+E LRP +EEAF
Sbjct: 61 RLANTVSVTLPYVREDVSLGIVFRALGIVSDEDILNHICYDRTDTQMLEALRPCIEEAFC 120
Query: 288 IQNQQ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ+++ +IGKRG G R ++ AK++LQKEMLPH+ + CET+KA++ G+++
Sbjct: 121 IQDREIALDFIGKRGNGNAGQNRMNRVRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMV 180
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLL CALGRR DDRDH+G KRLDLAGPLL LFR + R++T D+ SY+++C+D K+
Sbjct: 181 HRLLQCALGRRDPDDRDHFGKKRLDLAGPLLAKLFRNVIRRMTQDLMSYMKRCIDTNKNF 240
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------- 454
+L IK T+T GLKYSLATGNWG Q AA + AGVSQVLN T+AST ++
Sbjct: 241 SLALGIKHSTLTNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPI 300
Query: 455 -LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WG++CPA+TPEGQACGLVKNL+LM Y+++G+ A PI+EF+ G
Sbjct: 301 GRDGKLAKPRQLHNTHWGLVCPADTPEGQACGLVKNLSLMCYVSVGTPADPIVEFMIARG 360
Query: 514 TENFE 518
E E
Sbjct: 361 MEVLE 365
>gi|120561273|gb|ABM27021.1| RNA polymerase II second largest subunit, partial [Monoblepharis
macrandra]
Length = 879
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/365 (51%), Positives = 261/365 (71%), Gaps = 17/365 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKV+IAQE+M+ N VY+F +P + AE+ S E R S+ + + R K
Sbjct: 1 SEKVIIAQERMAANQVYIFTSNRPGGVSIQAEIRSQMEKGARKISSCAIKRMPR---KRS 57
Query: 228 SSGQY-IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
++GQ +++T+P +++++P+++LFRALG +D +ILEH CYDF D+QM+E+LRPS+EE
Sbjct: 58 TTGQMNLYSTVPLLKSDVPVVVLFRALGVLSDREILEHCCYDFDDSQMLEMLRPSIEEGN 117
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ ++ +IGKR T+G++R+K I +A +ILQKE+LPH+G E +KA++ G++I
Sbjct: 118 EIQEREVALDFIGKRAQTMGLSRDKRIAFAAQILQKELLPHIGIQARSEGRKAWFLGYMI 177
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLLLCAL RR DDRDH+G KRLDLAGPL+ LFR LFR+LT D+ ++K V++ ++
Sbjct: 178 HRLLLCALERREADDRDHFGKKRLDLAGPLMANLFRMLFRRLTQDISRALRKAVESHREF 237
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW---- 457
N+ A++ + IT GL++SLATGNWG Q TRAGVSQVL+ TYAST ++
Sbjct: 238 NMVSAVQHQIITRGLQFSLATGNWGDQRKMMQTRAGVSQVLSRYTYASTLSHLRRLNSPI 297
Query: 458 ----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM YI++GS P+++FL+EW
Sbjct: 298 GREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGSPVEPLVDFLQEWT 357
Query: 514 TENFE 518
E+ E
Sbjct: 358 LEDLE 362
>gi|45545305|gb|AAS67500.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Baeomyces sp. SLJ472]
Length = 894
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/351 (53%), Positives = 251/351 (71%), Gaps = 14/351 (3%)
Query: 181 NHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYI 240
N V +FKK NK +VAE+ S E +R S + + + S+ G GQ I TLPYI
Sbjct: 5 NIVQIFKKAD-NKTPFVAEIRSAVEKGSRLISGLQIKIHSKGEGAKGGLGQTIKVTLPYI 63
Query: 241 RTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGK 296
++E+PI I+FRALG +DEDIL HICYD QDT M+ELL+P +EEAF IQ+++ +IGK
Sbjct: 64 KSEVPIAIVFRALGVVSDEDILNHICYDRQDTPMLELLKPCIEEAFVIQDREVALDFIGK 123
Query: 297 RGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAED 356
RG + +TR+K IKYA++I+ KE+LPH+ + ET+KA++ G+++HR+L LGRR D
Sbjct: 124 RGNSNSITRDKRIKYARDIVVKELLPHISQTEGSETRKAFFLGYMVHRMLQVVLGRREPD 183
Query: 357 DRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGG 416
DRDH+G KRLDLAGPL+ GLFR LF KL DV +Y++KCV++ ++ NL +K+ T+T G
Sbjct: 184 DRDHFGKKRLDLAGPLMAGLFRMLFNKLVKDVYNYLKKCVESNREFNLSLGVKSTTLTNG 243
Query: 417 LKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHN 467
LKYSLATGNWG Q AA ++AGVSQVLN T+AST ++ K+AKPRQLHN
Sbjct: 244 LKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHN 303
Query: 468 SQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
+ WG++CPAETPEGQACGLVKNL+LM YIT+G+ PI++F+ + E E
Sbjct: 304 THWGLVCPAETPEGQACGLVKNLSLMCYITVGTPNEPIIDFMIQRSMEVLE 354
>gi|6606103|gb|AAF19064.1|AF107792_1 DNA-dependent RNA polymerase II RPB140, partial [Microascus
trigonosporus]
Length = 937
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/357 (51%), Positives = 253/357 (70%), Gaps = 15/357 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKV+IAQE+ + N V VFKK QP+ Y+Y AE+ S E +R S + + + S+
Sbjct: 1 SEKVIIAQERSAANIVQVFKKAQPSPYSYTAEIRSALEKGSRLISQLALRLYSKGGRGAS 60
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSG +HATLPY+R E PI ++FRA G +DEDIL HICYD D+QM+E+L+P +EE+F
Sbjct: 61 SSGAIVHATLPYVREETPIALIFRAYGVVSDEDILNHICYDRNDSQMLEMLKPCIEESFV 120
Query: 288 IQNQQ----YIGKRGATVG--VTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHI 341
+Q+++ +IGKRG G +TR+K I+ AKEILQKE LPH+ + ET+KA++ G++
Sbjct: 121 VQDREVALDHIGKRGQQGGFALTRDKRIRTAKEILQKETLPHISQAEGSETRKAFFLGYM 180
Query: 342 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD 401
+H+LL CALGRR DDRDH+G KRLDLAGPLL LFR + R++ ++ SY++ C+ N ++
Sbjct: 181 VHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLSKLFRNIMRRMNTELTSYMKMCIQNNRN 240
Query: 402 VNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------ 454
+ I+ T+T G+KYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 FQISQGIRITTLTNGMKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTP 300
Query: 455 --LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFL 509
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM ++++G+ PI EF+
Sbjct: 301 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTPTDPIEEFM 357
>gi|45545333|gb|AAS67514.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Melanomma radicans]
Length = 936
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/364 (52%), Positives = 256/364 (70%), Gaps = 15/364 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VF+K+Q + AE+ S E R S+ + +
Sbjct: 1 SEKVLIAQERSAANIVQVFRKKQ-GPIPWTAEIRSAVEKGTRLISSFNIKWTDNSLILKR 59
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
+ G + +A LPYI+ ++P+ I+FRALG +DEDIL HI YD +DTQM+ELL+PS+EE
Sbjct: 60 TPGPFAYALLPYIKADVPMAIVFRALGIVSDEDILNHIVYDREDTQMLELLKPSIEEGSM 119
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ+++ +I +RG T G T+E+ +K+AKEI+Q+E LPH+ + +T+KA++FG++IH
Sbjct: 120 IQDRENALDWIARRGNTTG-TKERRLKFAKEIMQREFLPHISQREGADTRKAFFFGYMIH 178
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLL C LGRR EDDRDH+G KRLDLAGPL+ LFR LF KLT DV Y+QKCV+N ++ N
Sbjct: 179 RLLQCVLGRREEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDVFKYLQKCVENNQEFN 238
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
+Q A+K +T GLKYSLATGNWG Q AA +AGVSQVLN TYAST ++
Sbjct: 239 VQMAVKGSVLTNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVG 298
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++G+ + PI +++ +
Sbjct: 299 RDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTESTPITDYMSQRQM 358
Query: 515 ENFE 518
E E
Sbjct: 359 ELLE 362
>gi|63100546|gb|AAH95078.1| Polr2b protein [Danio rerio]
Length = 366
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 202/362 (55%), Positives = 256/362 (70%), Gaps = 27/362 (7%)
Query: 4 EEERLEEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
E+ + +ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I
Sbjct: 6 EDIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65
Query: 61 EIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLY
Sbjct: 66 DLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLY 125
Query: 114 VDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
VD+TK +IK G + ++ +PIMLRS+YC L + + L EL ECP D GGYF
Sbjct: 126 VDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYF 185
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-- 221
IINGSEKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V M++R
Sbjct: 186 IINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMMARGG 244
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
K + GQ I +TLPYIR E+PIII+FRALGF +D DILEHI YDF D +MME+++PS
Sbjct: 245 QGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPS 304
Query: 282 LEEAFFIQNQ----QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+E+ IKYAKE+LQKE+LPHVG DFCETKKAY+
Sbjct: 305 LDEAFVIQEQNVALNFIGPRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETKKAYF 364
Query: 338 FG 339
G
Sbjct: 365 LG 366
>gi|399949761|gb|AFP65418.1| DNA-directed RNA polymerase II second largest subunit [Chroomonas
mesostigmatica CCMP1168]
Length = 1222
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 215/578 (37%), Positives = 329/578 (56%), Gaps = 78/578 (13%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS-- 74
+++ W ++++YF+E L+RQQ+DSF+EF ++ +Q+IVD+ + + +S+ G
Sbjct: 10 NEDDTWTLLNSYFKENNLIRQQIDSFNEFIESKIQDIVDDIPPLIVIDDSKKKTGSFEFS 69
Query: 75 -------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
++++SKP E +G T +L ARLRN +YS+PLY D++ ++ +
Sbjct: 70 KNRKLILRLGQLHISKPTFIEENGMTHSLRPIDARLRNFSYSSPLYCDISITTLQIAREK 129
Query: 128 E-----------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEK 170
E +PIM++S +C L + + + ECP+D GGYFIINGSEK
Sbjct: 130 EEEREIFEKEEHQKTLLGRLPIMIKSRFCVLDKLLPGDMVKFKECPFDAGGYFIINGSEK 189
Query: 171 VLIAQEKMSTNHVYVFKKRQPNKYA------------YVAEVCSMAESQNRPPSTIFVPM 218
V++ QE+++ NHVY+F K++ NK + + AE S+AE PS + V +
Sbjct: 190 VMVGQEQLAWNHVYIFPKKEINKSSEKIVFYTNKGILFFAECRSVAEFGRWSPSLLTVKV 249
Query: 219 -----------------LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDI 261
+ S G Y+ A LPY + +IP+ +F+ALGF + +I
Sbjct: 250 CVTVFPKKKKNKSTKNDNQKESLIHLYGGLYLRAILPYFKKDIPVTWIFKALGFENENEI 309
Query: 262 LEHICYDFQDTQMMELLRPSLEE-----AFFIQNQQYIGKRGATVGVTREKM-------- 308
L ++CY +D ++E++R S+E+ A N +I + + V + +
Sbjct: 310 LNYVCYGDEDEDLIEVIRYSIEDDRLTTANIFSNNSFILDQETALAVIGQHISKGTQGIR 369
Query: 309 IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDL 368
IK A EILQKE LPH+G G E +K ++ G+II++L+ +G+R DDRDHYG+KRLD+
Sbjct: 370 IKQAYEILQKEFLPHIGIGQGFELRKGFFLGYIINKLMNTQIGKRKTDDRDHYGHKRLDV 429
Query: 369 AGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA-IKAKTITGGLKYSLATGNWG 427
AG LL LFR L K+ D+R +QK V K+ F +K++ IT G++++LATGNWG
Sbjct: 430 AGSLLSILFRQLLGKVIKDLRVSLQKKVSLHKNFQPIFDFLKSRLITTGIQFALATGNWG 489
Query: 428 QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETP 479
+R GVSQVLN LT++S ++ KL KPRQLHN+ WG++CPAETP
Sbjct: 490 IDKQV-SRTGVSQVLNRLTFSSALSHLRRLNSPGGRDGKLTKPRQLHNTHWGLICPAETP 548
Query: 480 EGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
EG ACGLV+NLA+ ++TIGS + PILE LEE +N
Sbjct: 549 EGHACGLVRNLAMTAFVTIGSPSDPILELLEESKIKNL 586
>gi|162606010|ref|XP_001713520.1| DNA-directed RNA polymerase II second largest subunit [Guillardia
theta]
gi|13794440|gb|AAK39815.1|AF165818_23 DNA-directed RNA polymerase II second largest subunit [Guillardia
theta]
Length = 1206
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 226/570 (39%), Positives = 318/570 (55%), Gaps = 76/570 (13%)
Query: 22 WAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEI-- 79
W ++ +F +KGLV QQ++SF+ F QNTMQ+I+D+ I + + ++PG ++I
Sbjct: 12 WHILKLFFIQKGLVDQQINSFNNFIQNTMQDIIDDMPPITVYID--NDPGNDDLLSKIRM 69
Query: 80 -------YLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE---- 128
+LSKP E DG L ARLRNLTYS+PLY +++ +IK +
Sbjct: 70 VIRLGQLHLSKPTYIEDDGLVHNLVPNEARLRNLTYSSPLYCEISTSIIKNEKSIDYILK 129
Query: 129 ---------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMS 179
+PIM++S +C L K L LGECP D GGYFI+NGSEKV++AQE++S
Sbjct: 130 QFSEKILIGRIPIMIKSKFCILSNLDIKCLKNLGECPDDPGGYFIVNGSEKVIVAQEQLS 189
Query: 180 TNHVYVFKKRQPNK------------YAYVAEVCSMAESQNRPPS--------------- 212
N VY+F+K + + Y Y AE S+A+ PS
Sbjct: 190 WNKVYIFQKNENLRNTIKIKNYTVEGYLYFAECRSVADYSKWSPSLLTVKVCLCPYKDQK 249
Query: 213 -TIFVPMLSRTSAKGG-SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQ 270
+IF L S + S G Y+ LPY + +IPI +F+ALGF + +IL++ICYD Q
Sbjct: 250 FSIFKKNLKFNSPEIFLSGGFYLRMMLPYFKKDIPITWIFKALGFENEIEILDYICYDSQ 309
Query: 271 DTQMMELLRPSLEE-AFFIQNQQYIG-------KRGATVGVTREK-----MIKYAKEILQ 317
D ++ ++R +E+ QN I A +G K IK+A E+LQ
Sbjct: 310 DEDLISIVRYIVEDDKISTQNSLSISCPILDQETALAAIGQHVSKGPQGIRIKFAYEVLQ 369
Query: 318 KEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF 377
KE LPH+G G E +K Y+FG+II++L+ +G+R DDRDHYG KRLD GPLL LF
Sbjct: 370 KEFLPHIGIGQGFELRKGYFFGYIINKLISTQIGKRKMDDRDHYGYKRLDTVGPLLSQLF 429
Query: 378 RTLFRKLTGDVRSYVQKCVDN-GKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRA 436
R L K+ + ++ VQK + K L+ K+ +T G++Y+L+TGNWG + R
Sbjct: 430 RQLLGKVLKEFKTNVQKKIHRLDKKFELKDFFKSNYVTTGIQYALSTGNWGT-DKQSLRT 488
Query: 437 GVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVK 488
G+SQVLN L+Y+ST ++ K+ KPR LHNS WG +CP ETPEG +CGLVK
Sbjct: 489 GISQVLNRLSYSSTLSHLRRVNSPSAKGNKITKPRHLHNSHWGYICPVETPEGHSCGLVK 548
Query: 489 NLALMVYITIGSAAYPILEFLEEWGTENFE 518
NLAL ITIG++ I+E LE G E+ E
Sbjct: 549 NLALTAMITIGTSPLFIIEKLENLGLESLE 578
>gi|270304824|gb|ACZ71351.1| RNA polymerase II second largest subunit [Metzgeria decipiens]
Length = 235
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/230 (83%), Positives = 208/230 (90%), Gaps = 4/230 (1%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQ+I ATLPYIR EIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQFIRATLPYIRIEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++N
Sbjct: 121 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEIN 180
Query: 404 LQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
L +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 181 LAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 230
>gi|89274880|gb|ABD65881.1| RNA polymerase II second largest subunit, partial [Nia vibrissa]
Length = 524
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/342 (54%), Positives = 242/342 (70%), Gaps = 15/342 (4%)
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
QP+ ++AE+ S E + S V M R + S G + AT+PYI+ +IPI ++
Sbjct: 2 QPSPLNFLAEIRSAVEKGGKTISQFQVKMFHRNQER--SLGNLMKATIPYIKVDIPIWVV 59
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
FRALG +D DILEHICYD QD QM+E+L+P +++ F IQ+++ +IG RG T G++R
Sbjct: 60 FRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLSR 119
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
++ I+YA+EILQKEMLPH+ + E+KKAY+FG+++HRLLL AL RR DDRDH+G KR
Sbjct: 120 DRRIRYAQEILQKEMLPHISMTEGSESKKAYFFGYMVHRLLLAALERRELDDRDHFGKKR 179
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGN 425
LDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ NL A+K +TIT GLKYSLATGN
Sbjct: 180 LDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETRKEFNLSLAVKHQTITNGLKYSLATGN 239
Query: 426 WG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPA 476
WG Q + ++AGVSQVLN TYAST ++ K+AKPRQLHN WGM+
Sbjct: 240 WGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNHHWGMVXXX 299
Query: 477 ETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PEGQACGLVKNLALM IT+GS + P+++FLEEWG E+ E
Sbjct: 300 XXPEGQACGLVKNLALMACITVGSYSAPVIDFLEEWGLESLE 341
>gi|45545337|gb|AAS67516.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Neofusicoccum mangiferae]
Length = 910
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/366 (52%), Positives = 260/366 (71%), Gaps = 16/366 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VF+KRQ + ++AE+ S E +R S++ + + +
Sbjct: 1 SEKVLIAQERSAANIVQVFRKRQ-SPTPWIAEIRSAVEKGSRLLSSMTLKLYEKPQLWKE 59
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
G ++ATLPY++ +IPI I+FRALG +DEDI+ HIC+D DTQ+ME +RPS+EE+
Sbjct: 60 GQGACLYATLPYVKADIPIPIVFRALGIVSDEDIISHICFDKNDTQIMEAIRPSIEESVL 119
Query: 288 IQNQ----QYIGKRGA--TVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHI 341
IQ++ +IG+RG+ + G T+ + +K A++I+QKE LPH+ + ETKKA++ G++
Sbjct: 120 IQDRVSALDFIGRRGSNPSTGGTKRERVKLARDIIQKEFLPHISQAEGSETKKAFFLGYM 179
Query: 342 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD 401
I+RLL C LGRR EDDRDH+G KRLDLAGPLL LFR+LF KLT DV +Y++KC++ G+
Sbjct: 180 IYRLLQCHLGRRDEDDRDHFGKKRLDLAGPLLANLFRSLFLKLTRDVYNYLKKCIEAGRP 239
Query: 402 VNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------ 454
+LQ A+K TIT GLKYSLATGNWG Q AA ++AGVSQVLN TY+ST ++
Sbjct: 240 FSLQSAVKQGTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTYSSTLSHLRRTNTP 299
Query: 455 --LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEW 512
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM +T+GS PI +F+ +
Sbjct: 300 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCNVTVGSDVTPIQDFMTQR 359
Query: 513 GTENFE 518
E E
Sbjct: 360 NMELLE 365
>gi|6606097|gb|AAF19061.1|AF107789_1 DNA-dependent RNA polymerase II RPB140 [Neurospora crassa]
Length = 903
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/365 (51%), Positives = 252/365 (69%), Gaps = 14/365 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VFKK +Y AE+ S E +R S++ + + ++ G
Sbjct: 1 SEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMRLHTKADQNKG 60
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
+ TLPY++ E+ + I+FRALG +DEDIL HICYD +D+QM+E LRP +EEAF
Sbjct: 61 RLANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRRDSQMLEALRPCIEEAFC 120
Query: 288 IQNQQ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ+++ YIGKRG + G+ R IK AKE+LQKE+LPH+ + CET+KA++ G+++
Sbjct: 121 IQDREVALDYIGKRGNGSTGINRNGRIKAAKEMLQKELLPHISQAEGCETRKAFFLGYMV 180
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
H+LL C LGRR DDRDH+G KRLDLAGPLL LFR + R+LT D+ Y+++CVD K
Sbjct: 181 HKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRRLTQDLMGYMKRCVDTNKHF 240
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------- 454
+L IKA T+T GLKYSLATGNWG Q A + AGVSQVLN T++ST ++
Sbjct: 241 SLALGIKASTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFSSTLSHLRRTNTPI 300
Query: 455 -LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM ++++G+ A PI+EF+
Sbjct: 301 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTLADPIIEFMIARN 360
Query: 514 TENFE 518
E E
Sbjct: 361 MEVLE 365
>gi|300122083|emb|CBK22657.2| unnamed protein product [Blastocystis hominis]
Length = 1194
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 217/531 (40%), Positives = 312/531 (58%), Gaps = 57/531 (10%)
Query: 45 FNQNTMQEIVDES-ADIEIRPESQHNPGQQSDFAEIYLS---------KPMMTESDGE-T 93
N+ Q+I D+S IE E Q+ +D +I +S +P + + E +
Sbjct: 1 MNRTIEQQIRDQSDRGIEAISEGQYTTIADNDEDQIKISITMDGVKASRPTVASTGAEQS 60
Query: 94 ATLFLKAARLRNLTYSAPLYVDVTKRVIK-KGHDGEE------------VPIMLRSSYCT 140
+ L+ + ARLRNLTY+A +YV +T+ + KG++ ++ +P+MLRS C
Sbjct: 61 SVLWPREARLRNLTYAASIYVGMTQTSVHIKGNESDDAVSKSMDIRLCTIPVMLRSEACN 120
Query: 141 LYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEV 200
LY + +GEC YD+GGYFIINGSEK +IAQE+ +TN VYVF+K+QP+KY++ AE+
Sbjct: 121 LYGLDDERRASIGECIYDQGGYFIINGSEKAIIAQERQTTNKVYVFEKKQPSKYSWTAEI 180
Query: 201 CSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADED 260
S+ E + P T+ + M + +S + I A LP + EIP+ ILFRALG D
Sbjct: 181 RSVPEGSSVPAQTLMLCMYAHSSKSQIKNKYCIWAKLPTLSDEIPVCILFRALGCENDRS 240
Query: 261 ILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATV-----GVTREKMIKY 311
I++HICY+F D +MME RPSL EA + ++ +I R + R + +K+
Sbjct: 241 IIQHICYNFDDVEMMERFRPSLVEASECRTREVALNFIATRHPKMIDENGTRPRSERVKF 300
Query: 312 AKEILQKEMLPHVGT--GDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLA 369
A +LQK MLPH+ G KKA+Y G+++H+LL C+L R ++DRDH NKR+DLA
Sbjct: 301 ASRLLQKIMLPHINVDFGPNSNCKKAFYLGYMVHKLLNCSLNRNEQEDRDHISNKRMDLA 360
Query: 370 GPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD---VNLQFAIKAKTITGGLKYSLATGNW 426
GP++G LF L + T ++RS+++K V++ K +N+ K+ I+ GLKYS ATGNW
Sbjct: 361 GPMIGRLFHGLLYRFTKELRSHMKKVVNSRKGSSFINIMTNAKSSIISDGLKYSFATGNW 420
Query: 427 G-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAE 477
G + T GVSQ LN LTYAS+ + + K+ KPR LH++QWGMMCPAE
Sbjct: 421 GDRSRGMPTTTGVSQSLNRLTYASSLSSLRRLKSPIDTTSKVTKPRLLHSTQWGMMCPAE 480
Query: 478 TPEGQACGLVKNLALMVYITIGSA----------AYPILEFLEEWGTENFE 518
TPEGQ+CG+VKNLALM YI++G+ I LE G E E
Sbjct: 481 TPEGQSCGIVKNLALMCYISVGNPVGAAGARDWQVEKIYRLLENNGVEELE 531
>gi|59894357|gb|AAX11015.1| RNA polymerase II subunit [Cercophora atropurpurea]
Length = 595
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/363 (51%), Positives = 251/363 (69%), Gaps = 14/363 (3%)
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KVLIAQE+ + N V VFKK +Y AE+ S E +R S++ + M ++ G
Sbjct: 1 KVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMRMHTKADNAKGRL 60
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
+ TLPY++ E+ + I+FRALG +DEDIL HICYD +DTQM+E LRP +EEAF IQ
Sbjct: 61 ANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFVIQ 120
Query: 290 NQQ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
+++ YIGKRG +G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+
Sbjct: 121 DREVALDYIGKRGNGNMGQNRVNRIRAAKDLLQKEMLPHISQSEGCETRKAFFLGYMVHK 180
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LL C LGRR DDRDH+G KRLDLAGPLL LFR + R++T D+ SY+++C+D K +L
Sbjct: 181 LLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIIRRVTQDLMSYMKRCIDGNKQFSL 240
Query: 405 QFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------L 455
IKA T+T LKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 ALGIKAGTLTNALKYSLATGNWGDQKKAMNSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 300
Query: 456 SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++G+ A PI++F+ + G E
Sbjct: 301 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTNAEPIVDFMVQRGME 360
Query: 516 NFE 518
E
Sbjct: 361 VLE 363
>gi|59894407|gb|AAX11040.1| RNA polymerase II subunit [Neurospora pannonica]
Length = 597
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/363 (52%), Positives = 249/363 (68%), Gaps = 14/363 (3%)
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KVLIAQE+ + N V VFKK +Y AE+ S E +R S++ + + ++ G
Sbjct: 1 KVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMRLHTKADQNKGRL 60
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
+ TLPY++ E+ + I+FRALG +DEDIL HICYD +D+QM+E LRP +EEAF IQ
Sbjct: 61 ANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRRDSQMLEALRPCIEEAFCIQ 120
Query: 290 NQQ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
+++ YIGKRG GV R IK AKE+LQKE+LPH+ + CET+KA++ G+++H+
Sbjct: 121 DREVALDYIGKRGNGNTGVNRNSRIKAAKEMLQKELLPHISQAEGCETRKAFFLGYMVHK 180
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LL C LGRR DDRDH+G KRLDLAGPLL LFR + R+LT D+ Y+++CVD K +L
Sbjct: 181 LLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRRLTQDLMGYMKRCVDTNKHFSL 240
Query: 405 QFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------L 455
IKA T+T GLKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 ALGIKASTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 300
Query: 456 SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM ++++G+ A PI+EF+ E
Sbjct: 301 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTLADPIIEFMIARNME 360
Query: 516 NFE 518
E
Sbjct: 361 VLE 363
>gi|6606123|gb|AAF19074.1|AF107802_1 DNA-dependent RNA polymerase II RPB140 [Lasiodiplodia theobromae]
Length = 942
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/365 (52%), Positives = 258/365 (70%), Gaps = 16/365 (4%)
Query: 169 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGS 228
+KVLIAQE+ + N V VF+KRQ + ++AE+ S E +R S++ + + +
Sbjct: 1 DKVLIAQERSAANIVQVFRKRQ-SPTPWIAEIRSAVEKGSRLLSSMTLKLYEKPQLWKEG 59
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
G ++ATLPY++ ++PI I+FRALG +DEDI+ HIC+D DTQ+ME +RPS+EE+ I
Sbjct: 60 QGACLYATLPYVKADVPIPIVFRALGIVSDEDIISHICFDKNDTQLMEAIRPSIEESVLI 119
Query: 289 QNQ----QYIGKRGA--TVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
Q++ +IG+RG+ + G T+ + +K A++I+QKE LPH+ + ETKKA++ G++I
Sbjct: 120 QDRVSALDFIGRRGSNPSTGGTKRERVKLARDIIQKEFLPHISQAEGSETKKAFFLGYMI 179
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
+RLL C LGRR EDDRDH+G KRLDLAGPLL LFR+LF KLT DV SY++KCV+ G+
Sbjct: 180 YRLLQCHLGRRDEDDRDHFGKKRLDLAGPLLANLFRSLFLKLTRDVFSYLKKCVEAGRPF 239
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------- 454
+LQ A+K TIT GLKYSLATGNWG Q AA +AGVSQVLN TY+ST ++
Sbjct: 240 SLQSAVKQGTITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYSSTLSHLRRTNTPI 299
Query: 455 -LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM +T+GS PI +F+ +
Sbjct: 300 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCNVTVGSDVTPIQDFMTQRN 359
Query: 514 TENFE 518
E E
Sbjct: 360 MELLE 364
>gi|270304986|gb|ACZ71431.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
Length = 215
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 180/214 (84%), Positives = 194/214 (90%), Gaps = 4/214 (1%)
Query: 234 HATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ- 292
ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF IQNQQ
Sbjct: 1 RATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVIQNQQV 60
Query: 293 ---YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCA 349
YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHRLLLCA
Sbjct: 61 ALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHRLLLCA 120
Query: 350 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIK 409
LGRRAEDDRDHYGNKRLDLAGPLLG LFR LFRKLT DVR Y+QKCVDNGK++NL +A+K
Sbjct: 121 LGRRAEDDRDHYGNKRLDLAGPLLGSLFRMLFRKLTKDVRGYLQKCVDNGKEINLAYAVK 180
Query: 410 AKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLN 443
AKTIT GLKYSLATGNWGQ N AG RAGVSQVLN
Sbjct: 181 AKTITSGLKYSLATGNWGQANTAGVRAGVSQVLN 214
>gi|270305018|gb|ACZ71447.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
Length = 230
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/221 (81%), Positives = 197/221 (89%), Gaps = 4/221 (1%)
Query: 237 LPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ---- 292
LP IRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF IQNQQ
Sbjct: 1 LPXIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVIQNQQVALD 60
Query: 293 YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGR 352
YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHRLLLCALGR
Sbjct: 61 YIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHRLLLCALGR 120
Query: 353 RAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKT 412
RAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVD GK++NL +A+KAKT
Sbjct: 121 RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDXGKEINLAYAVKAKT 180
Query: 413 ITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
I GLKYSLATGNWGQ N AG AGVSQVLN LTYAST ++
Sbjct: 181 IXSGLKYSLATGNWGQANTAGVXAGVSQVLNRLTYASTLSH 221
>gi|59894415|gb|AAX11044.1| RNA polymerase II subunit [Schizothecium fimbriatum]
Length = 598
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/363 (51%), Positives = 250/363 (68%), Gaps = 14/363 (3%)
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KVLIAQE+ + N V VFKK +Y AE+ S E +R S++ + + ++ G
Sbjct: 1 KVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMRLHTKPDTSRGRL 60
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
+ TLPY++ E+ ++I+FRALG +DEDIL HICYD +DTQM+E LRP +EEAF IQ
Sbjct: 61 PNTVSVTLPYVKEEVSLVIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFVIQ 120
Query: 290 NQQ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
+++ YIGKRG +G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+
Sbjct: 121 DREVALDYIGKRGNGNMGQNRMNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHK 180
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LL C LGRR DDRDH+G KRLDLAGPLL LFR + R++T D+ SY+++C+D K +L
Sbjct: 181 LLQCVLGRRDVDDRDHFGKKRLDLAGPLLAKLFRGIVRRITQDLMSYMKRCIDGNKQFSL 240
Query: 405 QFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------L 455
IK T+T LKYSLATGNWG Q AA + AGVSQVLN T+AST ++
Sbjct: 241 ALGIKPSTLTNALKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 300
Query: 456 SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM YI++G+ A PI+EF+ E
Sbjct: 301 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYISVGTNAEPIVEFMIARNME 360
Query: 516 NFE 518
E
Sbjct: 361 VLE 363
>gi|51472093|gb|AAU04467.1| RNA polymerase II subunit [Lasiosphaeria lanuginosa]
Length = 597
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/363 (51%), Positives = 249/363 (68%), Gaps = 14/363 (3%)
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KVLIAQE+ + N V VFKK + +Y AE+ S E +R S++ + M ++ G
Sbjct: 1 KVLIAQERSAANIVQVFKKPAGSSVSYQAEIRSALEKGSRLISSLQMKMHTKAEPSKGRL 60
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
+ TLPY++ E+ + I+FRALG +DEDIL HICYD +DTQM+E LRP +EEAF IQ
Sbjct: 61 AGTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQ 120
Query: 290 NQQ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
+++ YIGKRG G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+
Sbjct: 121 DREVALDYIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHK 180
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LL C LGRR DDRDH+G KRLDLAGPLL LFR + R++T D+ Y+++C+D K +L
Sbjct: 181 LLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNKHFSL 240
Query: 405 QFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------L 455
IK+ ++T LKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 ALGIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 300
Query: 456 SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++GSAA PI+EF+ E
Sbjct: 301 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRNME 360
Query: 516 NFE 518
E
Sbjct: 361 ILE 363
>gi|59894427|gb|AAX11050.1| RNA polymerase II subunit [Sordaria macrospora]
Length = 600
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/363 (51%), Positives = 248/363 (68%), Gaps = 14/363 (3%)
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KVLIAQE+ + N V VFKK +Y AE+ S E +R S++ + + ++ G
Sbjct: 1 KVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMRLHTKADQNKGRL 60
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
+ TLPY++ E+ + I+FRALG +DEDIL HICYD +D+QM+E LRP +EEAF IQ
Sbjct: 61 ANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRRDSQMLEALRPCIEEAFCIQ 120
Query: 290 NQQ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
+++ YIGKRG G R +K AKE+LQKE+LPH+ + CET+KA++ G+++H+
Sbjct: 121 DREVALDYIGKRGNGNTGANRNSRVKAAKEMLQKELLPHISQAEGCETRKAFFLGYMVHK 180
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LL C LGRR DDRDH+G KRLDLAGPLL LFR + R+LT D+ Y+++CVD K +L
Sbjct: 181 LLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRRLTQDLMGYMKRCVDTNKHFSL 240
Query: 405 QFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------L 455
IKA T+T GLKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 ALGIKASTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 300
Query: 456 SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM ++++G+ A PI+EF+ E
Sbjct: 301 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTLADPIIEFMIARNME 360
Query: 516 NFE 518
E
Sbjct: 361 VLE 363
>gi|6606099|gb|AAF19062.1|AF107790_1 DNA-dependent RNA polymerase II RPB140 [Podospora anserina]
Length = 934
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/365 (51%), Positives = 253/365 (69%), Gaps = 14/365 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VFKK +Y AE+ S E +R S++ + + ++ S + G
Sbjct: 1 SEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMKLHTKASNEKG 60
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
+ TLPY+R ++ + I+FRALG +DEDIL HICYD +DTQM+E LRP +EEAF
Sbjct: 61 RLANTVSVTLPYVREDVSLAIVFRALGIVSDEDILNHICYDRKDTQMLEALRPCIEEAFC 120
Query: 288 IQNQQ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ+++ +IGKRG +G R I+ AK++LQKEMLPH+ + CET+KA++ G+++
Sbjct: 121 IQDREIALDFIGKRGNGNMGQNRMNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMV 180
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
++LL CALGRR DDRDH+G KRLDLAGPLL LFR + R++T D+ Y+++C+D K
Sbjct: 181 NKLLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCLDTNKHF 240
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------- 454
L IKA T+T LKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 TLALGIKANTLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPI 300
Query: 455 -LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++G+ A PI++F+ G
Sbjct: 301 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPADPIVDFMTARG 360
Query: 514 TENFE 518
+ E
Sbjct: 361 MDVLE 365
>gi|59894417|gb|AAX11045.1| RNA polymerase II subunit [Podospora fimiseda]
Length = 595
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/361 (51%), Positives = 252/361 (69%), Gaps = 14/361 (3%)
Query: 172 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ 231
LIAQE+ + N V VFKK +Y AE+ S E +R S++ + + ++ S++ G
Sbjct: 1 LIAQERSAANIVQVFKKPAGGSVSYQAEIRSALEKGSRLISSLQMKLHTKASSEKGRLAN 60
Query: 232 YIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ 291
+ TLPY+R ++ + I+FRALG +DEDIL HICYD +DTQM+E LRP +EEAF IQ++
Sbjct: 61 TVSVTLPYVREDVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQDR 120
Query: 292 Q----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLL 346
+ +IGKRG +G R I+ AK++LQKEMLPH+ + CETKKA++ G++++RLL
Sbjct: 121 EIALDFIGKRGNGNMGQNRVNRIRAAKDLLQKEMLPHISQTEGCETKKAFFLGYMVNRLL 180
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQF 406
LCALGRR DDRDH+G KRLDLAGPLL LFR + R++T D+ SY+++CVD K L
Sbjct: 181 LCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMSYMKRCVDTNKLFTLAL 240
Query: 407 AIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSW 457
IKA T+T LKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 GIKANTLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDG 300
Query: 458 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++G++A P++EF+ E
Sbjct: 301 KIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTSADPVVEFMVARNMEVL 360
Query: 518 E 518
E
Sbjct: 361 E 361
>gi|59894365|gb|AAX11019.1| RNA polymerase II subunit [Cercophora macrocarpa]
Length = 595
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/363 (51%), Positives = 250/363 (68%), Gaps = 14/363 (3%)
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KVLIAQE+ + N V VFKK +Y AE+ S E +R S++ + + ++ S+ G
Sbjct: 1 KVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMKLHTKASSDKGRL 60
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
+ TLPY+R ++ + I+FRALG +DEDIL HICYD DTQM+E LRP +EEAF IQ
Sbjct: 61 AGGVSVTLPYVREDVSLAIVFRALGIVSDEDILNHICYDRNDTQMLEALRPCIEEAFVIQ 120
Query: 290 NQQ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
+++ +IGKRG G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+
Sbjct: 121 DREVALDFIGKRGNGNAGQNRSNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHK 180
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LL CALGRR DDRDH+G KRLDLAGPLL LFR + R++T D+ SY+++C+D K +L
Sbjct: 181 LLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMSYMKRCIDTNKQFSL 240
Query: 405 QFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------L 455
IK+ T+T LKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 ALGIKSCTLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 300
Query: 456 SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++G+ A PI+EF+ E
Sbjct: 301 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPADPIVEFMTARNME 360
Query: 516 NFE 518
E
Sbjct: 361 VLE 363
>gi|59894397|gb|AAX11035.1| RNA polymerase II subunit [Lasiosphaeria hispida]
Length = 600
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/363 (51%), Positives = 252/363 (69%), Gaps = 14/363 (3%)
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KVLIAQE+ + N V VFKK + +Y AE+ S E+ +R S++ + + ++ A G
Sbjct: 1 KVLIAQERSAANIVQVFKKPPGSSVSYQAEIRSALENGSRLISSLQMRLHTKHDASKGRL 60
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
+ TLPY++ E+ + I+FRALG +DEDIL HICYD +DTQM+E LRP +EEAF IQ
Sbjct: 61 ANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQ 120
Query: 290 NQQ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
+++ YIGKRG G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+
Sbjct: 121 DREIALDYIGKRGNGNTGQNRMNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHK 180
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LL C LGRR DDRDH+G KRLDLAGPL+ LFR L R++T ++ ++++C+D K +L
Sbjct: 181 LLQCVLGRRDTDDRDHFGKKRLDLAGPLMAKLFRGLVRRITQELMQHMKRCIDGNKHFSL 240
Query: 405 QFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------L 455
IK T+T GLKYSLATGNWG Q AA + AGVSQVLN T+AST ++
Sbjct: 241 ALGIKPGTLTNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 300
Query: 456 SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM ++++GSA PI+EF+ G E
Sbjct: 301 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGSAQEPIIEFMIARGME 360
Query: 516 NFE 518
E
Sbjct: 361 VLE 363
>gi|51472095|gb|AAU04468.1| RNA polymerase II subunit [Lasiosphaeria ovina]
gi|51472103|gb|AAU04472.1| RNA polymerase II subunit [Lasiosphaeria ovina]
gi|51472109|gb|AAU04475.1| RNA polymerase II subunit [Lasiosphaeria ovina]
Length = 597
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/363 (51%), Positives = 249/363 (68%), Gaps = 14/363 (3%)
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KVLIAQE+ + N V VFKK + +Y AE+ S E +R S++ + M ++ G
Sbjct: 1 KVLIAQERSAANIVQVFKKPAGSSVSYQAEIRSALEKGSRLISSLQMKMHTKGEPAKGRI 60
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
+ TLPY++ E+ + I+FRALG +DEDIL HICYD +DTQM+E LRP +EEAF IQ
Sbjct: 61 AGTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQ 120
Query: 290 NQQ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
+++ YIGKRG G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+
Sbjct: 121 DREVALDYIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHK 180
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LL C LGRR DDRDH+G KRLDLAGPLL LFR + R++T D+ Y+++C+D K +L
Sbjct: 181 LLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNKHFSL 240
Query: 405 QFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------L 455
IK+ ++T LKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 ALGIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 300
Query: 456 SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++GSAA PI+EF+ E
Sbjct: 301 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRNME 360
Query: 516 NFE 518
E
Sbjct: 361 ILE 363
>gi|270304836|gb|ACZ71357.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
Length = 213
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/213 (84%), Positives = 193/213 (90%), Gaps = 4/213 (1%)
Query: 234 HATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ- 292
ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF IQNQQ
Sbjct: 1 RATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVIQNQQV 60
Query: 293 ---YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCA 349
YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHRLLLCA
Sbjct: 61 ALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHRLLLCA 120
Query: 350 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIK 409
LGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++NL +A+K
Sbjct: 121 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEINLAYAVK 180
Query: 410 AKTITGGLKYSLATGNWGQGNAAGTRAGVSQVL 442
AKTIT GLKYSLATGNWGQ N AG R GVSQVL
Sbjct: 181 AKTITSGLKYSLATGNWGQANTAGVRXGVSQVL 213
>gi|6606119|gb|AAF19072.1|AF107800_1 DNA-dependent RNA polymerase II RPB140 [Dothidea insculpta]
gi|82706467|gb|ABB89611.1| RNA polymerase II second largest subunit, partial [Dothidea
insculpta]
Length = 936
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/364 (51%), Positives = 257/364 (70%), Gaps = 15/364 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VF+K+ + VAE+ S E +R S++ + + S+ ++ G
Sbjct: 1 SEKVLIAQERSAANIVQVFRKKG-SPTPVVAEIRSAVEKGSRLISSMQLKLFSKGDSQKG 59
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
G I ATLPYI+++IPI I+FRALG +D IL+ ICYD D+QM E+++P LEEAF
Sbjct: 60 GLGGTIKATLPYIKSDIPIAIVFRALGVVSDMQILDCICYDANDSQMREMIKPCLEEAFV 119
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ+++ +IGKRG +G TRE I+YA++++QKE LPH+ + ET+KA++ G++I+
Sbjct: 120 IQDREVALDFIGKRGQQMG-TREXRIRYARDVMQKEFLPHISQKEGSETRKAFFLGYMIN 178
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLL CALGR EDDRDH+G KRLDLAGPL+ +FR F +L D R Y+ +CV+ GK+ N
Sbjct: 179 RLLQCALGRVEEDDRDHFGKKRLDLAGPLMAQVFRLKFTQLIRDTRVYLSRCVEGGKEFN 238
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
L A+KA ++ GL+Y LATGNWG Q AA +AGVSQVLN TYAST ++
Sbjct: 239 LTLAVKANILSSGLRYCLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPIG 298
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++G+ + PI+EF+ +
Sbjct: 299 RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPSEPIIEFMNQRNM 358
Query: 515 ENFE 518
E E
Sbjct: 359 ELLE 362
>gi|59894435|gb|AAX11054.1| RNA polymerase II subunit [Valsonectria pulchella]
Length = 592
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/363 (50%), Positives = 251/363 (69%), Gaps = 14/363 (3%)
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KVLIAQE+ + N V VFKK + +Y AE+ S E +R S++ + M ++ G
Sbjct: 1 KVLIAQERSAANIVQVFKKPAGSSVSYQAEIRSALEKGSRLISSLQMKMHTKGEPAKGRI 60
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
+ TLPY++ E+ + I+FRALG +DEDIL HICYD +DTQM+E LRP +EEAF IQ
Sbjct: 61 AGTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQ 120
Query: 290 NQQ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
+++ YIGKRG G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+
Sbjct: 121 DREVALDYIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHK 180
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LL C LGRR DDRDH+G KRLDLAGPLL LFR + R++T ++ Y+++C+++ + N+
Sbjct: 181 LLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRRMTNELSGYIRRCIESDRMFNV 240
Query: 405 QFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------L 455
+K T+T GLKYSLATGNWG Q AA + AGVSQVLN T+AST ++
Sbjct: 241 TMGLKHTTLTSGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 300
Query: 456 SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++GS A P++EF+ G E
Sbjct: 301 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPADPLIEFMIHRGME 360
Query: 516 NFE 518
E
Sbjct: 361 VVE 363
>gi|51472085|gb|AAU04463.1| RNA polymerase II subunit [Lasiosphaeria lanuginosa]
Length = 597
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/361 (51%), Positives = 248/361 (68%), Gaps = 14/361 (3%)
Query: 172 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ 231
LIAQE+ + N V VFKK + +Y AE+ S E +R S++ + M ++ A G
Sbjct: 1 LIAQERSAANIVQVFKKPAGSSVSYQAEIRSALEKGSRLISSLQMKMHTKGEASKGRIAG 60
Query: 232 YIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ 291
+ TLPY++ E+ + I+FRALG +DEDIL HICYD +DTQM+E LRP +EEAF IQ++
Sbjct: 61 TVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQDR 120
Query: 292 Q----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLL 346
+ YIGKRG G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+LL
Sbjct: 121 EVALDYIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHKLL 180
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQF 406
C LGRR DDRDH+G KRLDLAGPLL LFR + R++T D+ Y+++C+D K +L
Sbjct: 181 QCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNKHFSLAL 240
Query: 407 AIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSW 457
IK+ ++T LKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 GIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDG 300
Query: 458 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++GSAA PI+EF+ E
Sbjct: 301 KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRNMEIL 360
Query: 518 E 518
E
Sbjct: 361 E 361
>gi|6606129|gb|AAF19077.1|AF107805_1 DNA-dependent RNA polymerase II RPB140 [Preussia minima]
Length = 937
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/364 (51%), Positives = 252/364 (69%), Gaps = 15/364 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VF+K+Q + AE+ S E R S+ + +
Sbjct: 1 SEKVLIAQERSAANIVQVFRKKQ-GPIPWTAEIRSAVEKGTRLISSFNIKWTDNSMIVKR 59
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
G + +A LPYI+ ++P+ I+FRALG +DEDIL HI YD DTQM+ELL+PS+EE
Sbjct: 60 QPGPFAYAVLPYIKADVPMAIVFRALGIVSDEDILNHIVYDRNDTQMLELLKPSIEEGAM 119
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ ++ +I +RG G T++K +K+A+EI+Q+E LPH+ + +T+KA++FG++IH
Sbjct: 120 IQERETALDWIARRGNQTG-TKDKRLKFAREIMQREFLPHISQKEGQDTRKAFFFGYMIH 178
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLL C LGRR EDDRDH+G KRLDLAGPL+ LFR LF KLT D+ +Y++KCVD ++ N
Sbjct: 179 RLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDMFNYLRKCVDAEQEFN 238
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
A+KA +T GLKYSLATGNWG Q AA +AGVSQVLN TYAST ++
Sbjct: 239 ATLALKASIVTNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVG 298
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++G+ + PI++F+ +
Sbjct: 299 RDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGNESAPIIDFMSQRNM 358
Query: 515 ENFE 518
+ E
Sbjct: 359 DLLE 362
>gi|51472081|gb|AAU04461.1| RNA polymerase II subunit [Lasiosphaeria glabrata]
Length = 599
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/363 (50%), Positives = 251/363 (69%), Gaps = 14/363 (3%)
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KVLIAQE+ + N V VFKK + +Y AE+ S E +R S++ + + ++ + G
Sbjct: 1 KVLIAQERSAANIVQVFKKPPGSSISYQAEIRSALEKGSRLISSLQMKLHTKGEPQKGRL 60
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
+ TLPY++ ++ + I+FRALG +DEDIL HICYD +DTQM+E LRP +EEAF IQ
Sbjct: 61 PNTVSVTLPYVKDDVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQ 120
Query: 290 NQQ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
+++ YIGKRG G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+
Sbjct: 121 DREVALDYIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHK 180
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LL C LGRR DDRDH+G KRLDLAGPLL LFR++ R++T D+ Y+++C+D K +L
Sbjct: 181 LLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRSVVRRMTQDLMGYMKRCIDTNKHFSL 240
Query: 405 QFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------L 455
IK+ ++T LKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 ALGIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 300
Query: 456 SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++GSAA PI+EF+ E
Sbjct: 301 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRNME 360
Query: 516 NFE 518
E
Sbjct: 361 ILE 363
>gi|51472117|gb|AAU04479.1| RNA polymerase II subunit [Lasiosphaeria sorbina]
Length = 599
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/363 (50%), Positives = 249/363 (68%), Gaps = 14/363 (3%)
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KVLIAQE+ + N V VFKK + +Y AE+ S E +R S++ + M +++ G
Sbjct: 1 KVLIAQERSAANIVQVFKKPSGSSVSYQAEIRSALEKGSRLISSLQMKMHTKSEPTKGRL 60
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
+ TLPY++ E+ + I+FRALG +DEDIL HICYD +DT M+E LRP +EEAF IQ
Sbjct: 61 SGTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTPMLEALRPCIEEAFCIQ 120
Query: 290 NQQ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
+++ +IGKRG G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+
Sbjct: 121 DREVALDFIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHK 180
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LL C LGRR DDRDH+G KRLDLAGPLL LFR + R++T D+ Y+++C+D K +L
Sbjct: 181 LLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVIRRMTQDLMGYMKRCIDTNKHFSL 240
Query: 405 QFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------L 455
IK+ ++T LKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 ALGIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 300
Query: 456 SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++GSAA PI+EF+ E
Sbjct: 301 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRNME 360
Query: 516 NFE 518
E
Sbjct: 361 ILE 363
>gi|45545357|gb|AAS67526.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Xanthoria polycarpa]
Length = 893
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/355 (52%), Positives = 249/355 (70%), Gaps = 15/355 (4%)
Query: 177 KMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHAT 236
+ + N V VFKK N Y+AE+ S E +R S++ V + + K G G I
Sbjct: 1 RSAANIVQVFKKSGTNT-PYIAEIRSALEKGSRLISSLSVQLTTLAKTKEGG-GHTIMVD 58
Query: 237 LPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ---- 292
+PYI ++P +ILFRALG +DEDIL HICYD D M+E+L+P LEEA+ IQ+++
Sbjct: 59 MPYIVPKVPAMILFRALGVVSDEDILNHICYDRADGDMLEMLKPPLEEAWLIQDREVALD 118
Query: 293 YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGR 352
++GKRG ++R + IK+A+++LQKE+LPH+ + ET+KA++ G++IHR+L CALGR
Sbjct: 119 FLGKRGKNQKMSRNERIKFARDVLQKELLPHISQTEGSETRKAFFLGYMIHRMLQCALGR 178
Query: 353 RAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKT 412
R DDRDH+G KRLDLAGPLL GLFR LF+KLT D+ Y+QKCV++ ++ NL +K T
Sbjct: 179 RDVDDRDHFGKKRLDLAGPLLAGLFRMLFQKLTKDIYKYLQKCVESNREFNLALGVKQNT 238
Query: 413 ITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPR 463
++ GLKYSLATGNWG Q AA +AGVSQVLN T+AST ++ K+AKPR
Sbjct: 239 LSSGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPR 298
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
QLHN+ WG++CPAETPEGQACGLVKNLALM YIT+G+ A PI+++L G E+ E
Sbjct: 299 QLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPADPIVDYLTNRGMESLE 353
>gi|51472087|gb|AAU04464.1| RNA polymerase II subunit [Lasiosphaeria lanuginosa]
Length = 595
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/361 (51%), Positives = 248/361 (68%), Gaps = 14/361 (3%)
Query: 172 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ 231
LIAQE+ + N V VFKK + +Y AE+ S E +R S++ + M ++ A G
Sbjct: 1 LIAQERSAANIVQVFKKPAGSSVSYQAEIRSALEKGSRLISSLQMKMHTKGEASKGRIAG 60
Query: 232 YIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ 291
+ TLPY++ E+ + I+FRALG +DEDIL HICYD +DTQM+E LRP +EEAF IQ++
Sbjct: 61 TVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQDR 120
Query: 292 Q----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLL 346
+ +IGKRG G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+LL
Sbjct: 121 EVALDFIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHKLL 180
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQF 406
C LGRR DDRDH+G KRLDLAGPLL LFR + R++T D+ Y+++C+D K +L
Sbjct: 181 QCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNKHFSLAL 240
Query: 407 AIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSW 457
IK+ ++T LKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 GIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDG 300
Query: 458 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++GSAA PI+EF+ E
Sbjct: 301 KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRNMEIL 360
Query: 518 E 518
E
Sbjct: 361 E 361
>gi|51472089|gb|AAU04465.1| RNA polymerase II subunit [Lasiosphaeria lanuginosa]
Length = 594
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/361 (51%), Positives = 247/361 (68%), Gaps = 14/361 (3%)
Query: 172 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ 231
LIAQE+ + N V VFKK + +Y AE+ S E +R S++ + M ++ G
Sbjct: 1 LIAQERSAANIVQVFKKPAGSSVSYQAEIRSALEKGSRLISSLQMKMHTKAEPAKGRIAG 60
Query: 232 YIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ 291
+ TLPY++ E+ + I+FRALG +DEDIL HICYD +DTQM+E LRP +EEAF IQ++
Sbjct: 61 TVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQDR 120
Query: 292 Q----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLL 346
+ YIGKRG G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+LL
Sbjct: 121 EVALDYIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHKLL 180
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQF 406
C LGRR DDRDH+G KRLDLAGPLL LFR + R++T D+ Y+++C+D K +L
Sbjct: 181 QCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNKHFSLAL 240
Query: 407 AIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSW 457
IK+ ++T LKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 GIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDG 300
Query: 458 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++GSAA PI+EF+ E
Sbjct: 301 KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRNMEIL 360
Query: 518 E 518
E
Sbjct: 361 E 361
>gi|51472091|gb|AAU04466.1| RNA polymerase II subunit [Lasiosphaeria lanuginosa]
Length = 595
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/361 (51%), Positives = 247/361 (68%), Gaps = 14/361 (3%)
Query: 172 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ 231
LIAQE+ + N V VFKK + +Y AE+ S E +R S++ + M ++ G
Sbjct: 1 LIAQERSAANIVQVFKKPAGSSVSYQAEIRSALEKGSRLISSLQMKMHTKAEPAKGRLAG 60
Query: 232 YIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ 291
+ TLPY++ E+ + I+FRALG +DEDIL HICYD +DTQM+E LRP +EEAF IQ++
Sbjct: 61 TVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQDR 120
Query: 292 Q----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLL 346
+ YIGKRG G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+LL
Sbjct: 121 EVALDYIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHKLL 180
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQF 406
C LGRR DDRDH+G KRLDLAGPLL LFR + R++T D+ Y+++C+D K +L
Sbjct: 181 QCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNKHFSLAL 240
Query: 407 AIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSW 457
IK+ ++T LKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 GIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDG 300
Query: 458 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++GSAA PI+EF+ E
Sbjct: 301 KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRNMEIL 360
Query: 518 E 518
E
Sbjct: 361 E 361
>gi|51472115|gb|AAU04478.1| RNA polymerase II subunit [Lasiosphaeria rugulosa]
Length = 597
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/361 (50%), Positives = 249/361 (68%), Gaps = 14/361 (3%)
Query: 172 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ 231
LIAQE+ + N V VFKK + +Y AE+ S E +R S++ + M ++ G
Sbjct: 1 LIAQERSAANIVQVFKKPPGSSVSYQAEIRSALEKGSRLISSLQMRMHTKAELTKGRLAG 60
Query: 232 YIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ 291
+ TLPY++ ++ + I+FRALG +DEDIL HICYD +DTQM+E LRP +EEAF IQ++
Sbjct: 61 TVSVTLPYVKEDVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQDR 120
Query: 292 Q----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLL 346
+ +IGKRG G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+LL
Sbjct: 121 EVALDFIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHKLL 180
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQF 406
C LGRR DDRDH+G KRLDLAGPLL LFR++ R++T D+ SY+++C+D K +L
Sbjct: 181 QCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRSVVRRMTQDLMSYMKRCIDTNKHFSLAL 240
Query: 407 AIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSW 457
IK+ ++T LKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 GIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDG 300
Query: 458 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++GSAA PI+EF+ E
Sbjct: 301 KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAAEPIIEFMTSRNMEIL 360
Query: 518 E 518
E
Sbjct: 361 E 361
>gi|51472119|gb|AAU04480.1| RNA polymerase II subunit [Lasiosphaeria sorbina]
Length = 592
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/361 (51%), Positives = 247/361 (68%), Gaps = 14/361 (3%)
Query: 172 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ 231
LIAQE+ + N V VFKK + +Y AE+ S E +R S++ + M ++ G
Sbjct: 1 LIAQERSAANIVQVFKKPAGSSVSYQAEIRSALEKGSRLISSLQMKMHTKAEPAKGRLSG 60
Query: 232 YIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ 291
+ TLPY++ E+ + I+FRALG +DEDIL HICYD +DTQM+E LRP +EEAF IQ++
Sbjct: 61 TVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQDR 120
Query: 292 Q----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLL 346
+ YIGKRG G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+LL
Sbjct: 121 EVALDYIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHKLL 180
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQF 406
C LGRR DDRDH+G KRLDLAGPLL LFR + R++T D+ Y+++C+D K +L
Sbjct: 181 QCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNKHFSLAL 240
Query: 407 AIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSW 457
IK+ ++T LKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 GIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDG 300
Query: 458 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++GSAA PI+EF+ E
Sbjct: 301 KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRNMEIL 360
Query: 518 E 518
E
Sbjct: 361 E 361
>gi|51472097|gb|AAU04469.1| RNA polymerase II subunit [Lasiosphaeria ovina]
gi|51472099|gb|AAU04470.1| RNA polymerase II subunit [Lasiosphaeria ovina]
gi|51472101|gb|AAU04471.1| RNA polymerase II subunit [Lasiosphaeria ovina]
gi|51472111|gb|AAU04476.1| RNA polymerase II subunit [Lasiosphaeria ovina]
Length = 595
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/361 (51%), Positives = 247/361 (68%), Gaps = 14/361 (3%)
Query: 172 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ 231
LIAQE+ + N V VFKK + +Y AE+ S E +R S++ + M ++ G
Sbjct: 1 LIAQERSAANIVQVFKKPAGSSVSYQAEIRSALEKGSRLISSLQMKMHTKGEPAKGRIAG 60
Query: 232 YIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ 291
+ TLPY++ E+ + I+FRALG +DEDIL HICYD +DTQM+E LRP +EEAF IQ++
Sbjct: 61 TVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQDR 120
Query: 292 Q----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLL 346
+ YIGKRG G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+LL
Sbjct: 121 EVALDYIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHKLL 180
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQF 406
C LGRR DDRDH+G KRLDLAGPLL LFR + R++T D+ Y+++C+D K +L
Sbjct: 181 QCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNKHFSLAL 240
Query: 407 AIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSW 457
IK+ ++T LKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 GIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDG 300
Query: 458 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++GSAA PI+EF+ E
Sbjct: 301 KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRNMEIL 360
Query: 518 E 518
E
Sbjct: 361 E 361
>gi|270304822|gb|ACZ71350.1| RNA polymerase II second largest subunit [Metzgeria conjugata]
Length = 210
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/210 (84%), Positives = 191/210 (90%), Gaps = 4/210 (1%)
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
TLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF IQNQQ
Sbjct: 1 TLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVIQNQQVAL 60
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHRLLLCALG
Sbjct: 61 DYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHRLLLCALG 120
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RRAEDDRDHYGNKRLDLAGPLLG LFR LFRKLT DVR Y+QKCVDNGK++NL +A+KAK
Sbjct: 121 RRAEDDRDHYGNKRLDLAGPLLGSLFRMLFRKLTKDVRGYLQKCVDNGKEINLAYAVKAK 180
Query: 412 TITGGLKYSLATGNWGQGNAAGTRAGVSQV 441
TIT GLKYSLATGNWGQ N AG RAGVSQV
Sbjct: 181 TITSGLKYSLATGNWGQANTAGVRAGVSQV 210
>gi|51472105|gb|AAU04473.1| RNA polymerase II subunit [Lasiosphaeria ovina]
gi|51472107|gb|AAU04474.1| RNA polymerase II subunit [Lasiosphaeria ovina]
Length = 597
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/361 (51%), Positives = 247/361 (68%), Gaps = 14/361 (3%)
Query: 172 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ 231
LIAQE+ + N V VFKK + +Y AE+ S E +R S++ + M ++ G
Sbjct: 1 LIAQERSAANIVQVFKKPAGSSVSYQAEIRSALEKGSRLISSLQMKMHTKGEPAKGRIAG 60
Query: 232 YIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ 291
+ TLPY++ E+ + I+FRALG +DEDIL HICYD +DTQM+E LRP +EEAF IQ++
Sbjct: 61 TVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQDR 120
Query: 292 Q----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLL 346
+ YIGKRG G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+LL
Sbjct: 121 EVALDYIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHKLL 180
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQF 406
C LGRR DDRDH+G KRLDLAGPLL LFR + R++T D+ Y+++C+D K +L
Sbjct: 181 QCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNKHFSLAL 240
Query: 407 AIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSW 457
IK+ ++T LKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 GIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDG 300
Query: 458 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++GSAA PI+EF+ E
Sbjct: 301 KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRNMEIL 360
Query: 518 E 518
E
Sbjct: 361 E 361
>gi|270304956|gb|ACZ71416.1| RNA polymerase II second largest subunit [Metzgeria furcata]
Length = 210
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/210 (84%), Positives = 191/210 (90%), Gaps = 4/210 (1%)
Query: 235 ATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ-- 292
ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF IQNQQ
Sbjct: 1 ATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVIQNQQVA 60
Query: 293 --YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCAL 350
YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHRLLLCAL
Sbjct: 61 LDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHRLLLCAL 120
Query: 351 GRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKA 410
GRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++NL +A+KA
Sbjct: 121 GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEINLAYAVKA 180
Query: 411 KTITGGLKYSLATGNWGQGNAAGTRAGVSQ 440
KTIT GLKYSLATGNWGQ N AG RAGV Q
Sbjct: 181 KTITSGLKYSLATGNWGQANTAGVRAGVXQ 210
>gi|45545339|gb|AAS67517.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Alyxoria varia]
Length = 894
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/355 (51%), Positives = 247/355 (69%), Gaps = 15/355 (4%)
Query: 177 KMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHAT 236
+ + N V VFKK+Q + AE+ S E R S+ + + + G +++A
Sbjct: 1 RSAANIVQVFKKKQ-GPIPWTAEIRSAVEKGTRLISSFSIKWAENSMIIKRTPGPFVYAM 59
Query: 237 LPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ---- 292
LPYI+ ++P+ ++FRALG +DEDIL HICYD DT M+ELL+PS+EE IQ+++
Sbjct: 60 LPYIKADVPMAVVFRALGVVSDEDILNHICYDRNDTGMLELLKPSIEEGAMIQDRENALD 119
Query: 293 YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGR 352
+I +RG T G T+++ +K+A++I+Q+E LPH+ + +T+KA++FG++IHRLL C LGR
Sbjct: 120 WIARRGNTTG-TKDRRLKFARDIMQREFLPHISQKEGSDTRKAFFFGYMIHRLLQCVLGR 178
Query: 353 RAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKT 412
R EDDRDH+G KRLDLAGPL+ LFR LF KLT DV Y+QKCV+N + N+Q A+KA
Sbjct: 179 REEDDRDHFGKKRLDLAGPLIANLFRVLFLKLTKDVFKYLQKCVENSTEFNVQMAVKASV 238
Query: 413 ITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPR 463
IT GLKYSLATGNWG Q AA +AGVSQVLN TYAST ++ KLAKPR
Sbjct: 239 ITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPR 298
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
QLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++GS + PI +F+ + E E
Sbjct: 299 QLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSESTPITDFMGQRNMELLE 353
>gi|59894403|gb|AAX11038.1| RNA polymerase II subunit [Linocarpon appendiculatum]
Length = 588
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/363 (51%), Positives = 246/363 (67%), Gaps = 22/363 (6%)
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KVLIAQE+ + N V VFKK + +Y AE+ S E +R ++S + S
Sbjct: 1 KVLIAQERSAANIVQVFKKPAGSNVSYTAEIRSALEKGSR--------LISSLQMRLYSK 52
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
G + TLPY++ EIP+ I+FRALG +DEDIL HICYD D+QM+E+LRP +EEAF IQ
Sbjct: 53 GNTVRTTLPYVKDEIPLAIVFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCIQ 112
Query: 290 NQQ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
+++ +IGKRG G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+
Sbjct: 113 DREIALDFIGKRGNGNTGQNRANRIRGAKDVLQKEMLPHIAQTEGCETRKAFFLGYMVHK 172
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LL CALGRR DDRDH+G KRLDLAGPLL LFR + R+LT D+ Y+++C+D K +L
Sbjct: 173 LLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRNIVRRLTQDLMGYIKRCIDTQKLFSL 232
Query: 405 QFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------L 455
IK +T LKYSLATGNWG Q A + AGVSQVLN T++ST ++
Sbjct: 233 ALGIKPANLTNSLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFSSTLSHLRRTNTPIGR 292
Query: 456 SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++GS A PI++F+ E
Sbjct: 293 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPIIDFMVARNME 352
Query: 516 NFE 518
E
Sbjct: 353 VLE 355
>gi|59894349|gb|AAX11011.1| RNA polymerase II subunit [Camarops amorpha]
Length = 596
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/361 (50%), Positives = 245/361 (67%), Gaps = 14/361 (3%)
Query: 172 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ 231
LIAQE+ + N V VFKK +Y AE+ S E +R S + + + S+ + G
Sbjct: 1 LIAQERSAANIVQVFKKPAGGPVSYSAEIRSALEKGSRLISQLQMRLYSKGDSSSGKIAN 60
Query: 232 YIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ 291
+ TLPY++ EIP+ I+FRALG +DEDIL HICYD +D QM+E+LRP +EEAF IQ++
Sbjct: 61 TVRTTLPYVKDEIPLAIVFRALGVVSDEDILNHICYDRKDFQMLEMLRPCIEEAFCIQDR 120
Query: 292 Q----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLL 346
+ +IGKRG G R I+ A+++LQKEMLPH+ + CET+KA++ G+++H+LL
Sbjct: 121 EVALDFIGKRGNGNTGQNRANRIRAARDVLQKEMLPHISQTEGCETRKAFFLGYMVHKLL 180
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQF 406
CALGRR DDRDH+G KRLDLAGPLL LFR + RK+T D+ SY+++C+D K L
Sbjct: 181 QCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRNIVRKMTQDLMSYIKRCIDQQKHFTLAL 240
Query: 407 AIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSW 457
IK +T LKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 GIKHTMLTSALKYSLATGNWGEQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDG 300
Query: 458 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++G+ A PI++F+ E
Sbjct: 301 KIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIIDFMIARNMEVL 360
Query: 518 E 518
E
Sbjct: 361 E 361
>gi|270304850|gb|ACZ71364.1| RNA polymerase II second largest subunit [Metzgeria furcata]
Length = 212
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/212 (83%), Positives = 191/212 (90%), Gaps = 4/212 (1%)
Query: 235 ATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ-- 292
ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF IQNQQ
Sbjct: 1 ATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVIQNQQVA 60
Query: 293 --YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCAL 350
YIGKRG+TVGVTR+K IKYA EILQKEMLPHVG G+FCETKKAY+FG+IIHRLLLCAL
Sbjct: 61 LDYIGKRGSTVGVTRDKRIKYAXEILQKEMLPHVGVGEFCETKKAYFFGYIIHRLLLCAL 120
Query: 351 GRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKA 410
GRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKC DNGK++NL +A+KA
Sbjct: 121 GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCXDNGKEINLAYAVKA 180
Query: 411 KTITGGLKYSLATGNWGQGNAAGTRAGVSQVL 442
KTI GLKYSLATGNWGQ N AG RAGVSQVL
Sbjct: 181 KTIXSGLKYSLATGNWGQANTAGVRAGVSQVL 212
>gi|59894343|gb|AAX11008.1| RNA polymerase II subunit [Bombardia bombarda]
Length = 593
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/360 (51%), Positives = 247/360 (68%), Gaps = 14/360 (3%)
Query: 173 IAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQY 232
IAQE+ + N V VFKK +Y AE+ S E +R S++ + M ++ G
Sbjct: 1 IAQERSAANIVQVFKKPAGGSVSYQAEIRSALEKGSRLISSLQMRMHTKADNAKGRLANT 60
Query: 233 IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ 292
++ TLPY++ E+ + I+FRALG +DEDIL HICYD +D+QM+E LRP +EEAF IQ+++
Sbjct: 61 VNVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDSQMLEALRPCIEEAFCIQDRE 120
Query: 293 ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLL 347
YIGKRG G R I+ A+++LQKEMLPH+ + CETKKA++ G+++H+LL
Sbjct: 121 IALDYIGKRGNGNTGQNRMNRIRAARDLLQKEMLPHISQSEGCETKKAFFLGYMVHKLLQ 180
Query: 348 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA 407
C LGRR DDRDH+G KRLDLAGPLL LFR + R+LT D+ SY+++C+D K +L
Sbjct: 181 CVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRLTQDLMSYMKRCIDTNKYFSLALG 240
Query: 408 IKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWK 458
IKA T+T LKYSLATGNWG Q AA + AGVSQVLN T+AST ++ K
Sbjct: 241 IKASTLTNALKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGK 300
Query: 459 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM ++++G+ A P++EF+ E E
Sbjct: 301 LAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTPAEPVIEFMINRNMEVLE 360
>gi|51472083|gb|AAU04462.1| RNA polymerase II subunit [Lasiosphaeria glabrata]
Length = 595
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/361 (50%), Positives = 249/361 (68%), Gaps = 14/361 (3%)
Query: 172 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ 231
LIAQE+ + N V VFKK + +Y AE+ S E +R S++ + + ++ + G
Sbjct: 1 LIAQERSAANIVQVFKKPPGSSISYQAEIRSALEKGSRLISSLQMKLHTKGEPQKGRLPN 60
Query: 232 YIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ 291
+ TLPY++ ++ + I+FRALG +DEDIL HICYD +DTQM+E LRP +EEAF IQ++
Sbjct: 61 TVSVTLPYVKDDVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQDR 120
Query: 292 Q----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLL 346
+ YIGKRG G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+LL
Sbjct: 121 EVALDYIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHKLL 180
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQF 406
C LGRR DDRDH+G KRLDLAGPLL LFR++ R++T D+ Y+++C+D K +L
Sbjct: 181 QCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRSVVRRMTQDLMGYMKRCIDTNKHFSLAL 240
Query: 407 AIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSW 457
IK+ ++T LKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 GIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDG 300
Query: 458 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++GSAA PI+EF+ E
Sbjct: 301 KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRNMEIL 360
Query: 518 E 518
E
Sbjct: 361 E 361
>gi|51472113|gb|AAU04477.1| RNA polymerase II subunit [Lasiosphaeria rugulosa]
Length = 593
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/359 (50%), Positives = 249/359 (69%), Gaps = 14/359 (3%)
Query: 174 AQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI 233
AQE+ + N V VFKK + +Y AE+ S E +R S++ + M +++ G +
Sbjct: 1 AQERSAANIVQVFKKPPGSSISYQAEIRSALEKGSRLISSLQMRMHTKSEPPKGRLAGTV 60
Query: 234 HATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ- 292
TLPY++ ++ I I+FRALG +DEDIL HICYD +DTQM+E LRP +EEAF IQ+++
Sbjct: 61 SVTLPYVKEDVSIAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCVEEAFCIQDREV 120
Query: 293 ---YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLC 348
+IGKRG +G R I+ A+++LQKEMLPH+ + CET+KA++ G+++H+LL C
Sbjct: 121 ALDFIGKRGNGGMGQNRNNRIRAARDLLQKEMLPHISQTEGCETRKAFFLGYMVHKLLQC 180
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAI 408
LGRR DDRDH+G KRLDLAGPLL LFR++ R++T D+ SY+++C+D K +L I
Sbjct: 181 VLGRRDTDDRDHFGKKRLDLAGPLLAKLFRSVVRRMTQDLMSYMKRCIDTNKHFSLALGI 240
Query: 409 KAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKL 459
K+ ++T LKYSLATGNWG Q A + AGVSQVLN T+AST ++ KL
Sbjct: 241 KSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKL 300
Query: 460 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++GSAA PI+EF+ E E
Sbjct: 301 AKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAAEPIIEFMTSRNMEILE 359
>gi|89090016|gb|AAO64654.3| RNA polymerase II subunit RPB2, partial [Dacrymyces chrysospermus]
Length = 870
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/343 (53%), Positives = 239/343 (69%), Gaps = 15/343 (4%)
Query: 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIP 245
K QP+ +++AE+ S E + S + + M R K S+G + A LPYIR +IP
Sbjct: 1 LSKAQPSPISHLAEIRSQVEKGGKQISLLQIKMTHRNLEK--STGSLMRAQLPYIRNDIP 58
Query: 246 IIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATV 301
I+++FRALG D D+LEHICYD D M+E+L+P +EEAF IQ+++ YIG+RG T
Sbjct: 59 IVVVFRALGIVPDRDVLEHICYDPDDHAMLEMLKPCIEEAFVIQDREVALDYIGRRGTTT 118
Query: 302 GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHY 361
G++REK ++YA+EILQKEMLPH+ T + E+KKAY+FG+++HRL+L AL RR DDRDH+
Sbjct: 119 GLSREKRLRYAQEILQKEMLPHISTQEGAESKKAYFFGYMVHRLVLAALDRRELDDRDHF 178
Query: 362 GNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSL 421
G KRLDLAGPLL LFR LFR+LT DV Y+QKCV+ ++ N+ A+K TIT GLKYSL
Sbjct: 179 GKKRLDLAGPLLATLFRMLFRRLTKDVYRYMQKCVETHREFNINAAVKPATITNGLKYSL 238
Query: 422 ATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGM 472
ATGNWG Q +AGVSQVLN T+AST ++ K+A+PRQLHN WGM
Sbjct: 239 ATGNWGDQKKFMQAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIARPRQLHNHHWGM 298
Query: 473 MCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
+ GQACGLVKNLALM I++G+ + P++EFLEEWG E
Sbjct: 299 VXXXXXXXGQACGLVKNLALMACISVGTLSQPVVEFLEEWGLE 341
>gi|59894373|gb|AAX11023.1| RNA polymerase II subunit [Cercophora scortea]
Length = 597
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/363 (50%), Positives = 247/363 (68%), Gaps = 14/363 (3%)
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KVLIAQE+ + N V VFKK +Y AE+ S E +R S++ + + ++ G
Sbjct: 1 KVLIAQERSAANIVQVFKKPAGGSVSYQAEIRSALEKGSRLISSLQMRLHTKPDNSKGRL 60
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
+ TLPY++ E+ + I+FRALG +DEDIL HICYD +D+QM+E LRP +EEAF IQ
Sbjct: 61 ANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDSQMLEALRPCIEEAFCIQ 120
Query: 290 NQQ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
+++ YIGKRG G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+
Sbjct: 121 DREIALDYIGKRGNGNTGQNRMNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHK 180
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LL C LGRR DDRDH+G KRLDLAGPLL LFR + R++T D+ Y+++C+D + +L
Sbjct: 181 LLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNRHFSL 240
Query: 405 QFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------L 455
IKA T+T LKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 ALGIKASTLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 300
Query: 456 SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM ++++G+ A PI+EF+ E
Sbjct: 301 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTPADPIVEFMIARNME 360
Query: 516 NFE 518
E
Sbjct: 361 VLE 363
>gi|59894409|gb|AAX11041.1| RNA polymerase II subunit [Podospora appendiculata]
Length = 582
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/363 (50%), Positives = 247/363 (68%), Gaps = 14/363 (3%)
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KVLIAQE+ + N V VFKK +Y AE+ S E +R S++ + + ++ G
Sbjct: 1 KVLIAQERSAANIVQVFKKPAGGSVSYQAEIRSALEKGSRLISSLQMRLHTKPDNSKGRL 60
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
+ TLPY++ E+ + I+FRALG +DEDIL HICYD +D+QM+E LRP +EEAF IQ
Sbjct: 61 ANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDSQMLEALRPCIEEAFCIQ 120
Query: 290 NQQ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
+++ YIGKRG G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+
Sbjct: 121 DREIALDYIGKRGNGNTGQNRMNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHK 180
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LL C LGRR DDRDH+G KRLDLAGPLL LFR + R++T D+ Y+++C+D + +L
Sbjct: 181 LLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNRHFSL 240
Query: 405 QFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------L 455
IKA T+T LKYSLATGNWG Q A + AGVSQVLN T+AST ++
Sbjct: 241 ALGIKASTLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 300
Query: 456 SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM ++++G+ A PI+EF+ E
Sbjct: 301 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTPADPIVEFMIARNME 360
Query: 516 NFE 518
E
Sbjct: 361 VLE 363
>gi|59894369|gb|AAX11021.1| RNA polymerase II subunit [Cercophora newfieldiana]
Length = 600
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/360 (51%), Positives = 246/360 (68%), Gaps = 14/360 (3%)
Query: 173 IAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQY 232
IAQE+ + N V VFKK +Y AE+ S E +R S++ + + ++ G
Sbjct: 1 IAQERSAANIVQVFKKPAGGSVSYQAEIRSALEKGSRLISSLQMRLHTKPDNSKGRLANT 60
Query: 233 IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ 292
+ TLPY++ E+ + I+FRALG +DEDIL HICYD +DTQM+E LRP +EEAF IQ+++
Sbjct: 61 VSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRRDTQMLEALRPCIEEAFCIQDRE 120
Query: 293 ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLL 347
YIGKRG +G R I+ AK++LQKEMLPH+ + CET+KA++ G+++H+LL
Sbjct: 121 IALDYIGKRGNGNMGQNRMNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHKLLQ 180
Query: 348 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA 407
C LGRR DDRDH+G KRLDLAGPLL LFR + R++T D+ SY+++C+D K +L
Sbjct: 181 CVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRRITQDLMSYMKRCIDGNKQFSLALG 240
Query: 408 IKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWK 458
IK T+T LKYSLATGNWG Q AA + AGVSQVLN T+AST ++ K
Sbjct: 241 IKNGTLTNALKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGK 300
Query: 459 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
LAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM YI++G+ A PI++F+ E E
Sbjct: 301 LAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYISVGTNAEPIVDFMVARNMEVLE 360
>gi|359294861|gb|AEV21801.1| RPB2, partial [Candida tropicalis]
gi|359294863|gb|AEV21802.1| RPB2, partial [Candida tropicalis]
gi|359294865|gb|AEV21803.1| RPB2, partial [Candida tropicalis]
gi|359294873|gb|AEV21807.1| RPB2, partial [Candida tropicalis]
Length = 328
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/330 (55%), Positives = 242/330 (73%), Gaps = 15/330 (4%)
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KVLIAQE+ + N V VFKK P+ ++VAE+ S E +R S++ + + R G +
Sbjct: 1 KVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALEKGSRLISSMQIKLYGRDEK--GVA 58
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
G+ I ATLPYI+ +IPI+I+FRALG D DILEHICYD D QM+E+L+P +EE F IQ
Sbjct: 59 GRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGFVIQ 118
Query: 290 NQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRL 345
++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ + ET+KA++ G++++RL
Sbjct: 119 EREVALDFIGRRGVALGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVNRL 178
Query: 346 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQ 405
LLCAL R+ DDRDH+G KRLDLAGPLL GLFR LF+KLT D+ +Y+Q+CV+N D NL
Sbjct: 179 LLCALERKEPDDRDHFGKKRLDLAGPLLAGLFRILFKKLTKDIYNYMQRCVENDSDFNLT 238
Query: 406 FAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LS 456
A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 239 LAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRD 298
Query: 457 WKLAKPRQLHNSQWGMMCPAETPEGQACGL 486
K+AKPRQLHN+ WG++CPAETPEGQACGL
Sbjct: 299 GKIAKPRQLHNTHWGLVCPAETPEGQACGL 328
>gi|359294889|gb|AEV21815.1| RPB2, partial [Candida albicans]
gi|359294891|gb|AEV21816.1| RPB2, partial [Candida albicans]
gi|359294893|gb|AEV21817.1| RPB2, partial [Candida albicans]
gi|359294895|gb|AEV21818.1| RPB2, partial [Candida albicans]
gi|359294897|gb|AEV21819.1| RPB2, partial [Candida albicans]
Length = 328
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/330 (55%), Positives = 242/330 (73%), Gaps = 15/330 (4%)
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KVLIAQE+ + N V VFKK P+ ++VAE+ S E +R S++ + + R G S
Sbjct: 1 KVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRDEK--GVS 58
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
G+ I ATLPYI+ +IPI+I+FRALG D DILEHICYD D QM+E+L+P +EE F IQ
Sbjct: 59 GRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGFVIQ 118
Query: 290 NQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRL 345
++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ + ET+KA++ G++++RL
Sbjct: 119 EREVALDFIGRRGVALGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVNRL 178
Query: 346 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQ 405
LLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +Y+Q+CV+NG D N+
Sbjct: 179 LLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENGGDFNVT 238
Query: 406 FAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LS 456
A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 239 LAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRD 298
Query: 457 WKLAKPRQLHNSQWGMMCPAETPEGQACGL 486
K+AKPRQLHN+ WG++CPAETPEGQACGL
Sbjct: 299 GKIAKPRQLHNTHWGLVCPAETPEGQACGL 328
>gi|59894355|gb|AAX11014.1| RNA polymerase II subunit [Cercophora sp. SMH3200]
Length = 590
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/358 (50%), Positives = 249/358 (69%), Gaps = 14/358 (3%)
Query: 175 QEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIH 234
QE+ + N V VFKK +Y AE+ S E +R S++ + + ++ S++ G +
Sbjct: 1 QERSAANIVQVFKKPAGGSVSYQAEIRSALEKGSRLISSLQMKLHTKASSEKGRLANTVS 60
Query: 235 ATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ-- 292
TLPY+R ++ + I+FRALG +DEDIL HICYD +DTQM+E LRP +EEAF IQ+++
Sbjct: 61 VTLPYVREDVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQDREIA 120
Query: 293 --YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCA 349
+IGKRG +G R I+ AK++LQKEMLPH+ + CET+KA++ G+++++LLLC+
Sbjct: 121 LDFIGKRGNGNMGQNRVNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVNKLLLCS 180
Query: 350 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIK 409
LGRR DDRDH+G KRLDLAGPLL LFR + R++T D+ Y+++C+D K +L IK
Sbjct: 181 LGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNKHFSLALGIK 240
Query: 410 AKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLA 460
A T+T LKYSLATGNWG Q A + AGVSQVLN T+AST ++ K+A
Sbjct: 241 ANTLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIA 300
Query: 461 KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
KPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++G++A P++EF+ E E
Sbjct: 301 KPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTSADPVIEFMIARNMEVLE 358
>gi|120561279|gb|ABM27024.1| RNA polymerase II second largest subunit, partial [Monosiga
brevicollis]
Length = 904
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/365 (52%), Positives = 252/365 (69%), Gaps = 18/365 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSA--K 225
SEKVLIAQEKM+ N VYVF+K+ +K+ +V E+ S+ E NRP ST+ V ML S K
Sbjct: 1 SEKVLIAQEKMAGNTVYVFEKKD-SKHMFVTEMRSIVEDSNRPTSTMMVKMLRGGSGGTK 59
Query: 226 GGSS-GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEE 284
G ++ G+ IHA+LPYIR +IP+++LFRALGF D ILEHI YDF D +MMELL+PSL+E
Sbjct: 60 GRATFGRVIHASLPYIRQDIPVVVLFRALGFEDDRSILEHIIYDFDDMEMMELLKPSLDE 119
Query: 285 AFFIQNQQY----IGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFG 339
AF +Q ++ IG+R A VG++++ +++A++ILQKEMLPH+G G CE KA++ G
Sbjct: 120 AFVVQTREVALDLIGRRSMAAVGMSKDMRVRFARDILQKEMLPHIGVGPQCEQAKAFFLG 179
Query: 340 HIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNG 399
+++HR L AL RR DDRDHYGNKRLDLAG L+ LFRTLF++LT + V V+
Sbjct: 180 YMVHRTLQAALRRRELDDRDHYGNKRLDLAGSLVAYLFRTLFKQLTKKLTRKVTDLVNRN 239
Query: 400 KDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY---- 454
+ + + + GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 240 HKFMVITLLDVEILGSGLRYSLATGNWGDQKKAHEARAGVSQVLNRLTFASTLSHLRRLN 299
Query: 455 ----LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLE 510
+ K+AKPRQLHN+ WG +CPAETPEG A GLVKNL+LM +T+GS P+ + L
Sbjct: 300 SPIDRTGKIAKPRQLHNTHWGYICPAETPEGHAVGLVKNLSLMASLTVGSDDTPVHDLLG 359
Query: 511 EWGTE 515
G +
Sbjct: 360 ASGLD 364
>gi|59894391|gb|AAX11032.1| RNA polymerase II subunit [Gelasinospora tetrasperma]
Length = 590
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/356 (51%), Positives = 242/356 (67%), Gaps = 14/356 (3%)
Query: 177 KMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHAT 236
+ + N V VFKK +Y AE+ S E +R S++ + + ++ G + T
Sbjct: 1 RSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMRLHTKADQNKGRLANTVSVT 60
Query: 237 LPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ---- 292
LPY++ E+ + I+FRALG +DEDIL HICYD +D+QM+E LRP +EEAF IQ+++
Sbjct: 61 LPYVKEEVSLAIVFRALGVVSDEDILNHICYDRRDSQMLEALRPCIEEAFCIQDREVALD 120
Query: 293 YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
YIGKRG GV R IK AKE+LQKE+LPH+ + CET+KA++ G+++H+LL C LG
Sbjct: 121 YIGKRGNGHTGVNRNSRIKAAKEMLQKELLPHISQAEGCETRKAFFLGYMVHKLLQCVLG 180
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDH+G KRLDLAGPLL LFR + R+LT D+ Y+++CVD K +L IKA
Sbjct: 181 RRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRRLTQDLMGYMKRCVDTNKHFSLALGIKAS 240
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
T+T GLKYSLATGNWG Q A + AGVSQVLN T+AST ++ KLAKP
Sbjct: 241 TLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKP 300
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WG++CPAETPEGQACGLVKNL+LM ++++G+ A PI+EF+ E E
Sbjct: 301 RQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTLADPIIEFMIARNMEVLE 356
>gi|359294867|gb|AEV21804.1| RPB2, partial [Meyerozyma guilliermondii]
gi|359294869|gb|AEV21805.1| RPB2, partial [Meyerozyma guilliermondii]
gi|359294871|gb|AEV21806.1| RPB2, partial [Meyerozyma guilliermondii]
gi|359294877|gb|AEV21809.1| RPB2, partial [Meyerozyma guilliermondii]
gi|359294879|gb|AEV21810.1| RPB2, partial [Meyerozyma guilliermondii]
Length = 328
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/330 (54%), Positives = 242/330 (73%), Gaps = 15/330 (4%)
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KVLIAQE+ + N V VFKK P+ ++VAE+ S E +R S++ + + R + +S
Sbjct: 1 KVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERGSRLISSMQIKLYGRE--EKSTS 58
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
+ I ATLPYI+ +IPI+I+FRALG D DILEHICYD D QM+E+L+P +EE F IQ
Sbjct: 59 NRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEMLKPCVEEGFVIQ 118
Query: 290 NQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRL 345
++ +IG+RGA +G+ REK I+YAK+ILQKE+LP++ + ET+KA++ G++++RL
Sbjct: 119 EREVALDFIGRRGAALGIKREKRIQYAKDILQKELLPNITQDEGFETRKAFFLGYMVNRL 178
Query: 346 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQ 405
LLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +Y+Q+CV+N K NL
Sbjct: 179 LLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQRCVENDKVFNLT 238
Query: 406 FAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LS 456
A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 239 LAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRD 298
Query: 457 WKLAKPRQLHNSQWGMMCPAETPEGQACGL 486
K+AKPRQLHN+ WG++CPAETPEGQACGL
Sbjct: 299 GKIAKPRQLHNTHWGLVCPAETPEGQACGL 328
>gi|359294881|gb|AEV21811.1| RPB2, partial [Candida glabrata]
gi|359294883|gb|AEV21812.1| RPB2, partial [Candida glabrata]
gi|359294885|gb|AEV21813.1| RPB2, partial [Candida glabrata]
Length = 328
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 182/330 (55%), Positives = 239/330 (72%), Gaps = 15/330 (4%)
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KVLIAQE+ + N V VFKK P+ ++VAE+ S E +R ST+ V + R SS
Sbjct: 1 KVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGRDEK--SSS 58
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ 289
+ I ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+E+L+P +E+ F IQ
Sbjct: 59 ARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQ 118
Query: 290 NQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRL 345
+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ + E++KA++ G++I+RL
Sbjct: 119 DRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRL 178
Query: 346 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQ 405
LLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLFRKLT D+ Y+Q+ V+ D N++
Sbjct: 179 LLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQRTVEEANDFNMK 238
Query: 406 FAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LS 456
AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 239 LAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRD 298
Query: 457 WKLAKPRQLHNSQWGMMCPAETPEGQACGL 486
KLAKPRQLHN+ WG++CPAETPEGQACGL
Sbjct: 299 GKLAKPRQLHNTHWGLVCPAETPEGQACGL 328
>gi|45545335|gb|AAS67515.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Mycosphaerella punctiformis]
Length = 935
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 181/364 (49%), Positives = 254/364 (69%), Gaps = 17/364 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VFKK+ N +AE+ S E R S+ V + ++ +
Sbjct: 1 SEKVLIAQERSAANIVQVFKKKGTNT-PVMAELRSAVERGTRLISSTTVKLYNQ-AVNAN 58
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
+ GQ I +LPYI+T+IPI I+FRALG +DEDIL HI + +DTQM+E+L+P LEEAF
Sbjct: 59 NPGQTIKGSLPYIKTDIPIAIIFRALGVVSDEDILNHIV-NKEDTQMLEMLKPCLEEAFV 117
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
+Q++ +IG+RG G T+++ I+YA++I+QKE LPH+ + ETKKA++ G++++
Sbjct: 118 VQDRDNALDFIGRRGQQTG-TKDRRIRYARDIMQKEFLPHISQEEGSETKKAFFLGYMVN 176
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
R+L CALGR EDDRDH+G KRLDLAGPL+ +FR F +L +++ Y+ +CV+ G+D N
Sbjct: 177 RMLQCALGRTEEDDRDHFGKKRLDLAGPLMAQVFRLKFVQLVKEMKMYLHRCVEGGRDFN 236
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
+ AIK +T GL+Y LATGNWG Q A+ +AGVSQVLN TYAST ++
Sbjct: 237 ITLAIKTNILTSGLRYCLATGNWGDQKKASSAKAGVSQVLNRYTYASTLSHLRRTNTPIG 296
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+T+G+ P+ +F+ + G
Sbjct: 297 RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVTVGTPGEPLTDFMRQRGM 356
Query: 515 ENFE 518
+ E
Sbjct: 357 DLLE 360
>gi|59894341|gb|AAX11007.1| RNA polymerase II subunit [Bombardia bombarda]
Length = 590
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 180/356 (50%), Positives = 242/356 (67%), Gaps = 14/356 (3%)
Query: 177 KMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHAT 236
+ + N V VFKK +Y AE+ S E +R S++ + M ++ G ++ T
Sbjct: 1 RSAANIVQVFKKPAGGSVSYQAEIRSALEKGSRLISSLQMRMHTKADNAKGRLANTVNVT 60
Query: 237 LPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ---- 292
LPY++ E+ + I+FRALG +DEDIL HICYD D+QM+E LRP +EEAF IQ+++
Sbjct: 61 LPYVKEEVSLAIVFRALGVVSDEDILNHICYDRTDSQMLEALRPCIEEAFCIQDREIALD 120
Query: 293 YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
YIGKRG G R I+ A+++LQKEMLPH+ + CETKKA++ G+++H+LL C LG
Sbjct: 121 YIGKRGNGNTGQNRMNRIRAARDLLQKEMLPHISQSEGCETKKAFFLGYMVHKLLQCVLG 180
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDH+G KRLDLAGPLL LFR + R+LT D+ SY+++C+D K +L IKA
Sbjct: 181 RRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRLTQDLMSYMKRCIDTNKYFSLALGIKAS 240
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
T+T LKYSLATGNWG Q AA + AGVSQVLN T+AST ++ KLAKP
Sbjct: 241 TLTNALKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKP 300
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WG++CPAETPEGQACGLVKNL+LM ++++G+ A P++EF+ E E
Sbjct: 301 RQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTPAEPVIEFMINRNMEVLE 356
>gi|45120576|gb|AAO64673.2| RNA polymerase II subunit RPB2, partial [Polyporus arcularius]
Length = 750
Score = 367 bits (943), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 182/341 (53%), Positives = 235/341 (68%), Gaps = 15/341 (4%)
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILF 250
P+ +++AE+ S E + S V + R+ + S G + AT+PYI+ +IPI ++F
Sbjct: 1 PSPISFLAEIRSAVEKGGKTISQFQVKLYHRSQER--SLGNVMKATIPYIKVDIPIWVVF 58
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTRE 306
RALG +D DILEHICYD QD QM+E+L+P ++E F IQ+++ YIG RG T G+ RE
Sbjct: 59 RALGVISDRDILEHICYDMQDNQMLEMLKPCIDEGFVIQDREIALDYIGNRGTTTGLNRE 118
Query: 307 KMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRL 366
+ ++YA+EILQKEMLPHV + E+KKAY+FG++IHRLLL AL RR DDRDH+G KRL
Sbjct: 119 RRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRL 178
Query: 367 DLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNW 426
DLAGPLL LFR LFRKLT DV Y+QKCV+ K+ NL A+K TIT GLKYSLATGNW
Sbjct: 179 DLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNW 238
Query: 427 G-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAE 477
G Q + ++AGVSQVLN TYAST ++ K+AKPRQL
Sbjct: 239 GDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLXXXXXXXXXXXX 298
Query: 478 TPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PEGQACGLVKNL+LM I++G+ + P++EFLEEWG E+ E
Sbjct: 299 XPEGQACGLVKNLSLMSCISVGTLSAPVIEFLEEWGLESLE 339
>gi|86559345|gb|ABD04080.1| RNA polymerase II second largest subunit, partial [Boletinellus
merulioides]
Length = 315
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 178/317 (56%), Positives = 229/317 (72%), Gaps = 15/317 (4%)
Query: 173 IAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQY 232
IAQE+M+TNHVYVF K QP+ ++AE+ S E + S V M R + S G
Sbjct: 1 IAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQER--SLGNV 58
Query: 233 IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ 292
+ AT+PYIR +IPI ++FRALG +D DILEHICYD QD+QM+E+L+P +++ F IQ+++
Sbjct: 59 MKATIPYIRVDIPIWVVFRALGVISDRDILEHICYDMQDSQMLEMLKPCIDDGFVIQDRE 118
Query: 293 ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLC 348
+IG RG T G++RE+ I+YA+EILQKEMLPHV + E+KKAY+FG++IHRLLL
Sbjct: 119 VALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLA 178
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAI 408
AL RR DDRDH+G KRLDLAGPLL LFR LF+KLT DV Y+QKCV++ K+ NL A+
Sbjct: 179 ALERRELDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVESHKEFNLSLAV 238
Query: 409 KAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KL 459
K +TIT GLKYSLATGNWG Q + ++AGVSQVLN TYAST ++ K+
Sbjct: 239 KHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKI 298
Query: 460 AKPRQLHNSQWGMMCPA 476
AKPRQLHN+ WGM+CPA
Sbjct: 299 AKPRQLHNTHWGMVCPA 315
>gi|6606117|gb|AAF19071.1|AF107799_1 DNA-dependent RNA polymerase II RPB140 [Aureobasidium pullulans]
Length = 936
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 184/365 (50%), Positives = 252/365 (69%), Gaps = 16/365 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-TSAKG 226
SEKVLIAQE+ + N V VFKK+ + VAE+ S E R S++ + + + KG
Sbjct: 1 SEKVLIAQERSAANIVQVFKKKG-SPTPIVAEIRSATEKGTRLLSSMQLKLYQKGEQKKG 59
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
G I ATLPYI+ +IPI+I+FRALG +D IL+ ICYD DTQ+ E+++P LEEAF
Sbjct: 60 GILTGTIKATLPYIKADIPIVIVFRALGIVSDMQILDCICYDANDTQLREMIKPCLEEAF 119
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
+Q+++ +IGKRG VG +EK I+YA++ILQKE LPH+ + ET+KA++ G++I
Sbjct: 120 VVQDRENALDFIGKRGNQVG-GKEKRIRYARDILQKEFLPHISQREGSETRKAFFLGYMI 178
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
+R+ LGR EDDRDH+G KRLDL+GPL+ +FR F +L D+R Y+ +C++ G+D
Sbjct: 179 NRMCQVMLGRCDEDDRDHFGKKRLDLSGPLMAQVFRLKFTQLVRDMRVYLSRCIEQGRDF 238
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------- 454
NL A+K+ +T GL+Y LATGNWG Q AA +AGVSQVLN TYAST ++
Sbjct: 239 NLTLAVKSNILTSGLRYCLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPI 298
Query: 455 -LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+++G+ A PI+EF+ +
Sbjct: 299 GRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIVEFMNQRN 358
Query: 514 TENFE 518
E E
Sbjct: 359 MELLE 363
>gi|359294857|gb|AEV21799.1| RPB2, partial [Candida parapsilosis]
gi|359294859|gb|AEV21800.1| RPB2, partial [Candida parapsilosis]
gi|359294875|gb|AEV21808.1| RPB2, partial [Candida parapsilosis]
gi|359294887|gb|AEV21814.1| RPB2, partial [Candida parapsilosis]
Length = 328
Score = 364 bits (935), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 177/326 (54%), Positives = 238/326 (73%), Gaps = 15/326 (4%)
Query: 174 AQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI 233
AQE+ + N V VFKK P+ ++VAE+ S E +R S++ + + R + SS + I
Sbjct: 5 AQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRD--EKSSSARTI 62
Query: 234 HATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ- 292
ATLPYI+ +IPI+I+FRALG D DILEHICYD D QM+E+L+P +EE F IQ ++
Sbjct: 63 KATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGFVIQEREV 122
Query: 293 ---YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCA 349
+IG+RG +G+ REK I+YAK+ILQKE+LP++ + ET+KA++ G++++RLLLCA
Sbjct: 123 ALDFIGRRGVALGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVNRLLLCA 182
Query: 350 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIK 409
L R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +Y+Q+CV+N K+ NL A+K
Sbjct: 183 LERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENDKEFNLTLAVK 242
Query: 410 AKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLA 460
++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST ++ K+A
Sbjct: 243 SQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIA 302
Query: 461 KPRQLHNSQWGMMCPAETPEGQACGL 486
KPRQLHN+ WG++CPAETPEGQACGL
Sbjct: 303 KPRQLHNTHWGLVCPAETPEGQACGL 328
>gi|120561263|gb|ABM27016.1| RNA polymerase II second largest subunit, partial [Catenaria
anguillulae]
Length = 892
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 184/365 (50%), Positives = 249/365 (68%), Gaps = 26/365 (7%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKV+IAQE+ +TN V+VF K P AY AE+ S +++ R S+ V M
Sbjct: 1 SEKVIIAQERTATNTVFVFSK--PGG-AYQAEIRSQSDAGQRTLSSFIVRM--------- 48
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
+ I +LPYI+ EIP+ I+FRALG +D+ ILE ICY F D QM+E+L+P +E+A
Sbjct: 49 DKQRRITCSLPYIQEEIPLPIVFRALGVHSDKQILETICYHFDDDQMLEMLKPCIEQADV 108
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ+Q+ +IG+RG + R++ I+YA+++L++E LPH+GT CET+KA++ G+++H
Sbjct: 109 IQDQELALDHIGRRGRVTNMHRDQRIRYARDLLERETLPHIGTTPGCETRKAWFIGYMVH 168
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-DV 402
R+LL ALGRR DDRDH+G KRLDLAGPLL LF+T F K D+ K ++ +
Sbjct: 169 RMLLAALGRRPIDDRDHFGKKRLDLAGPLLASLFKTFFSKFVKDITREFTKSIERSQGPF 228
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW---- 457
+L +K IT GL+Y+LATGNWG Q TRAGVSQVLN T+AST ++
Sbjct: 229 HLASVVKPGIITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNTPI 288
Query: 458 ----KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM YI++G++A P++E L+E+G
Sbjct: 289 GREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGTSAEPVVEALQEYG 348
Query: 514 TENFE 518
EN E
Sbjct: 349 IENLE 353
>gi|156627835|gb|ABU88905.1| RNA polymerase II second largest subunit [Psilopezia deligata]
Length = 801
Score = 362 bits (928), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 172/299 (57%), Positives = 228/299 (76%), Gaps = 15/299 (5%)
Query: 212 STIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQD 271
S++ + + S+ AKG +S I +TLPYI+ +IPI+I+FRALG +DEDIL H+CYD D
Sbjct: 17 SSMQIKLYSKGQAKGYNST--IKSTLPYIKIDIPIVIVFRALGVVSDEDILNHVCYDRND 74
Query: 272 TQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTG 327
T+M+E+++P +EEAF IQ+++ YIGKRG + G +EK I+YA++ILQKE+LPH+
Sbjct: 75 TEMLEMMKPCIEEAFVIQDREIALDYIGKRGNSQGSNKEKRIRYARDILQKELLPHISQQ 134
Query: 328 DFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGD 387
+ ET+KA++ G+++HRLL CAL RR DDRDH+G KRLDLAGPLL LFRTL+++LT +
Sbjct: 135 EGNETRKAFFLGYMVHRLLQCALERREVDDRDHFGKKRLDLAGPLLAQLFRTLWKQLTKE 194
Query: 388 VRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLT 446
V Y++KCV+ GK+ NL A+K+ TIT GLKYSLATGNW Q AA ++AGVSQVLN T
Sbjct: 195 VYKYLEKCVEGGKEFNLNLAVKSNTITSGLKYSLATGNWASQKKAASSKAGVSQVLNRYT 254
Query: 447 YASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 497
+AST ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YIT
Sbjct: 255 FASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYIT 313
>gi|86559349|gb|ABD04082.1| RNA polymerase II second largest subunit, partial [Serpula
himantioides]
Length = 526
Score = 362 bits (928), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 180/336 (53%), Positives = 230/336 (68%), Gaps = 15/336 (4%)
Query: 196 YVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGF 255
++AE+ S E + S V M R + S G + AT+PYI+ +IPI ++FRALG
Sbjct: 4 FLAEIRSAVEKGGKTISQFQVKMFHRNQER--SLGNVMKATIPYIKVDIPIWVVFRALGV 61
Query: 256 TADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKY 311
+D DILEHICYD QD QM+E+L+P +++ F IQ+++ +IG RG T G++RE+ I+Y
Sbjct: 62 ISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLSRERRIRY 121
Query: 312 AKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 371
A+EILQKEMLPHV + E+KKAY+FG++IHRLLL AL RR DDRDH+G KRLDLAGP
Sbjct: 122 AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGP 181
Query: 372 LLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGN 430
LL LFR LFRKLT DV Y+QKCV+ K+ NL A+K +TIT GLKYSLATGNWG Q
Sbjct: 182 LLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 241
Query: 431 AAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQ 482
+ ++AGVSQVLN TYAST ++ K+AKPRQLHN WGM
Sbjct: 242 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNHHWGMXXXXXXXXXX 301
Query: 483 ACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
VKNLALM I++GS + P++EFLEEWG E+ E
Sbjct: 302 XXXXVKNLALMSCISVGSYSAPVIEFLEEWGLESLE 337
>gi|270304960|gb|ACZ71418.1| RNA polymerase II second largest subunit [Metzgeria furcata]
Length = 205
Score = 361 bits (926), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 169/205 (82%), Positives = 183/205 (89%), Gaps = 4/205 (1%)
Query: 235 ATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ-- 292
ATLPYIRTEIPII++FRALGF AD+BIL+HICYDF DT MMELLRPSLE AF IQNQQ
Sbjct: 1 ATLPYIRTEIPIIVIFRALGFVADKBILQHICYDFNDTSMMELLRPSLEXAFVIQNQQVA 60
Query: 293 --YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCAL 350
YIGK G+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG IIHRLLLCAL
Sbjct: 61 LDYIGKXGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGXIIHRLLLCAL 120
Query: 351 GRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKA 410
GRRAED RDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++NL +A+KA
Sbjct: 121 GRRAEDXRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEINLAYAVKA 180
Query: 411 KTITGGLKYSLATGNWGQGNAAGTR 435
KTIT GLKYSLATGNWGQ N AG R
Sbjct: 181 KTITSGLKYSLATGNWGQANTAGVR 205
>gi|45120570|gb|AAO64659.2| RNA polymerase II subunit RPB2, partial [Gautieria otthii]
Length = 856
Score = 357 bits (916), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 178/342 (52%), Positives = 230/342 (67%), Gaps = 15/342 (4%)
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
QP+ ++AE+ S E + ST V M R+ K SSG I AT+PYI+T+IPI ++
Sbjct: 1 QPSPINFLAEIRSAVEKGGKTVSTFQVKMFHRSQEK--SSGNVIKATIPYIKTDIPIWVV 58
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
FRALG +D DILEHICYD QD QM+E+L+P +++ F IQ++ +IG RG T+G++R
Sbjct: 59 FRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDRDVALDFIGNRGTTIGLSR 118
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
++ ++YA+EILQKEMLPH+ + E+KKAY+FG+++HRLLL AL RR DDRDH+G KR
Sbjct: 119 DRRLRYAQEILQKEMLPHIAMSEGAESKKAYFFGYMVHRLLLAALERRELDDRDHFGKKR 178
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGN 425
LDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ NL A+K TIT GLKYSLATGN
Sbjct: 179 LDLAGPLLASLFRMLFRKLTKDVYRYLQKCVETHKEFNLNLAVKPNTITNGLKYSLATGN 238
Query: 426 WG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPA 476
WG Q + ++AGVSQVLN TYAST ++
Sbjct: 239 WGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPXXXXXXXXXXXXXXXXXXXXXXXX 298
Query: 477 ETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
EGQACGLVKNLALM I++GS + P++EFLEEWG E+ E
Sbjct: 299 XXXEGQACGLVKNLALMACISVGSPSPPVIEFLEEWGLESLE 340
>gi|51472077|gb|AAU04459.1| RNA polymerase II subunit [Cercophora areolata]
Length = 574
Score = 357 bits (916), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 169/329 (51%), Positives = 234/329 (71%), Gaps = 14/329 (4%)
Query: 195 AYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALG 254
+Y AE+ S E +R S++ + + ++ + G + TLPY++ E+ + I+FRALG
Sbjct: 3 SYQAEIRSALEKGSRLISSLQMKLHTKADNQKGRLANTVSVTLPYVKDEVSLAIVFRALG 62
Query: 255 FTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRG-ATVGVTREKMI 309
+DEDIL HICYD DT M+E LRP +EEAF IQ+++ YIGKRG G R I
Sbjct: 63 VVSDEDILNHICYDRTDTPMLEALRPCIEEAFCIQDREIALDYIGKRGNGNQGQNRMNRI 122
Query: 310 KYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLA 369
+ AK++LQKEMLPH+ + CET+KA++ G+++H+LL CALGRR DDRDH+G KRLDLA
Sbjct: 123 RAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLA 182
Query: 370 GPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-Q 428
GPLL LFR + R++T D+ SY+++C++ + NL+ A++A+T+T LKYSLATGNWG Q
Sbjct: 183 GPLLAKLFRGVMRRMTQDLMSYMKRCIETNANFNLETAVRAQTLTNALKYSLATGNWGDQ 242
Query: 429 GNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPE 480
A + AGVSQVLN T+AST ++ KLAKPRQLHN+ WG++CPAETPE
Sbjct: 243 KKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPE 302
Query: 481 GQACGLVKNLALMVYITIGSAAYPILEFL 509
GQACGLVKNL+LM Y+++G+ A PI++F+
Sbjct: 303 GQACGLVKNLSLMCYVSVGTTADPIVDFM 331
>gi|68074899|ref|XP_679366.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56500098|emb|CAH97589.1| hypothetical protein PB000382.02.0 [Plasmodium berghei]
Length = 467
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 185/437 (42%), Positives = 281/437 (64%), Gaps = 35/437 (8%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
+ T+E++W VI ++F GLV QQ++S+++F + MQEI+DE +IEI+P+ Q+ P +
Sbjct: 32 QITEEDSWIVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPNIEIKPQPQYRPDKDE 91
Query: 75 D--------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV---------- 116
+ F ++ L +P E + L+ + ARLRNLTYS+ +Y+D+
Sbjct: 92 NNNIIYSLKFGQLSLDRPFFDEKNLVNKNLWPQEARLRNLTYSSAIYIDIEQSTYIIDEN 151
Query: 117 -TKRVIKKGHDGEEV-----PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEK 170
K+++K+ E + P+ML+S +C ++ ++++GEC D+GGYFI+NG EK
Sbjct: 152 TKKQILKEKFVYERINLGRIPLMLKSMFCWTKGLAENDISDMGECSLDQGGYFIVNGGEK 211
Query: 171 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSG 230
VL+AQE+M+ N +YVFKK+ +K+ ++AE+ S E +++ S V M +++ ++G
Sbjct: 212 VLVAQERMANNFIYVFKKKHSSKFGWIAEIRSQME-KSQATSAFSVKMKTKSGSRGSGGS 270
Query: 231 Q-----YIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA 285
+ ATLPYIRTEI + ILFRALG T+D DIL+ I YDF D M+ +LR +LEE
Sbjct: 271 GRSSGGLLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKMMINILRETLEEC 330
Query: 286 FFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHI 341
Q YIGKRG TVG +R+K I YAKE+L+KE+LPH+GTG E++K+Y+ G++
Sbjct: 331 IDYPTQDICLDYIGKRGPTVGASRDKRILYAKELLRKEVLPHMGTGSGVESRKSYFIGYM 390
Query: 342 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD 401
I+RLLL LGR EDDRDH+G KRLD+AGPL+ F T FRK+ DV+ +Q+ +DN K
Sbjct: 391 INRLLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFATYFRKMAKDVKRVLQRQIDNNKP 450
Query: 402 VNLQFAIKA-KTITGGL 417
++ AI++ IT G+
Sbjct: 451 FDVAGAIRSCSQITQGM 467
>gi|123481595|ref|XP_001323594.1| DNA-directed RNA polymerase, beta subunit family protein
[Trichomonas vaginalis G3]
gi|121906462|gb|EAY11371.1| DNA-directed RNA polymerase, beta subunit family protein
[Trichomonas vaginalis G3]
Length = 1177
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 205/563 (36%), Positives = 311/563 (55%), Gaps = 52/563 (9%)
Query: 1 MMMEEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
M +E + E+ +Q + W VIS +FE +GLV+QQL S++ F N + ++D+ I
Sbjct: 1 MDADEVSYVDANEDNWSQNDMWMVISKFFENRGLVKQQLKSYNSFINNCVDSVLDDKGHI 60
Query: 61 ----------EIRPESQHNPGQQSDFAEIYLS---KPMMTESDGETATLFLKAARLRNLT 107
+I+ + N + I++S ++ + E L +RLR+L+
Sbjct: 61 TLQSDQLLANKIKMDFNSNDDDEDQGKTIHISFGTSTVLRPTTPEGKQLTPMISRLRSLS 120
Query: 108 YSAPLYVDVTKRVIKKGH-------DGEE---VPIMLRSSYCTL--YQNSQKALTELGEC 155
YS L D+ V+ DG E VP+M+RS YC L +++ + L EC
Sbjct: 121 YSLILRSDIRVVVMDSNKNMKQLDVDGVEIAKVPVMIRSEYCHLSNHRDDRAINDNLNEC 180
Query: 156 PYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIF 215
YD GGYFI+NGSEKV+I QE M N + ++ KY E+ S + R
Sbjct: 181 DYDPGGYFIVNGSEKVIIGQEHMVINKPICYAQKSMVKYDLATEIRSQPKVFGRLSQPFN 240
Query: 216 VPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMM 275
+ +L+ T+ + + IHA L IP+ ILFRAL F D++IL+ ICYD +D++ +
Sbjct: 241 LFLLAPTAKQ---PERPIHAKLSKTEKTIPLFILFRALKFKGDKEILDLICYDPEDSEFI 297
Query: 276 ELLRPSLEEAF-FIQNQ---QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
++LRPS+EE+ F+ ++ ++GKR + + + ++ A+ +L + +LPH+G +
Sbjct: 298 DVLRPSIEESSSFLDDRACLDFVGKRCSIAAEEKSQRLRKAQRLLNEYLLPHLGEKESDT 357
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
T KA++ G++ H L+ LGRR +DDRDHY NKRLDLAGPL+G LF LF K+ + +
Sbjct: 358 TSKAFFIGYMAHNLINVVLGRRDQDDRDHYSNKRLDLAGPLIGQLFALLFEKMIKSLTQH 417
Query: 392 VQKCVDNGK---------DVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVL 442
++K + +G D+ Q + K+IT GL+YS+ TGNW AG++AGVSQ+L
Sbjct: 418 LEKRLKDGNIDQMAKSAADLTRQGVLNFKSITSGLEYSIGTGNWSVQRQAGSKAGVSQML 477
Query: 443 NCLTYASTFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMV 494
N LT+ ST + KL PR LHN+ WG +CP ETPEGQ+CGL+KNLALM
Sbjct: 478 NRLTFLSTLSNLRRTNTPIGRDGKLTGPRHLHNTHWGYICPVETPEGQSCGLIKNLALMS 537
Query: 495 YITIG---SAAYPILEFLEEWGT 514
+T+ A I LE+ GT
Sbjct: 538 IVTVNRELEAGDAITRILEDTGT 560
>gi|343128998|gb|AEL88422.1| RNA polymerase II [Metzgeria filicina]
gi|343129000|gb|AEL88423.1| RNA polymerase II [Metzgeria ciliata]
gi|343129002|gb|AEL88424.1| RNA polymerase II [Metzgeria rufula]
gi|343129004|gb|AEL88425.1| RNA polymerase II [Metzgeria pubescens]
Length = 207
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 166/199 (83%), Positives = 180/199 (90%), Gaps = 4/199 (2%)
Query: 259 EDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKE 314
+DIL+HICYDF DT MMELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKE
Sbjct: 1 KDILQHICYDFNDTSMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKE 60
Query: 315 ILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG 374
ILQKEMLPHVG G+FCETKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG
Sbjct: 61 ILQKEMLPHVGVGEFCETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG 120
Query: 375 GLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGT 434
GLFR LFRKLT DVR Y+QKCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N AG
Sbjct: 121 GLFRMLFRKLTKDVRGYLQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGV 180
Query: 435 RAGVSQVLNCLTYASTFTY 453
RAGVSQVLN LTYAST ++
Sbjct: 181 RAGVSQVLNRLTYASTLSH 199
>gi|358030894|dbj|BAL15356.1| RNA polymerase II second largest subunit, partial [Olpidium
bornovanus]
Length = 895
Score = 350 bits (899), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 164/304 (53%), Positives = 219/304 (72%), Gaps = 13/304 (4%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI +LPY+ +IP+ I+FRALG IL+ +CYD +D QMMELL+PS+EE
Sbjct: 11 SSGQYIRTSLPYVNQDIPVXIVFRALGVLPXAHILQQVCYDMEDDQMMELLKPSIEEGHS 70
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ+Q+ +IGKRG+ VG+TREK +KYA EI KE LPHV K+++FG++IH
Sbjct: 71 IQDQEVALDFIGKRGSAVGLTREKRVKYAMEIFVKEFLPHVDDYVTSAAHKSFFFGYMIH 130
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RL + AL RR DDRDHYG KR+DLAGPL+ GLFR LFRK+T D+ ++++KC+D ++ N
Sbjct: 131 RLCMAALERRELDDRDHYGKKRMDLAGPLISGLFRNLFRKMTTDIGAHLRKCMDQNREFN 190
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
L A+K+ IT GLKYSLATGNWG Q A +RAGVSQVLN T+AST ++
Sbjct: 191 LTLAVKSNHITNGLKYSLATGNWGDQQRAMQSRAGVSQVLNRYTFASTLSHLRRCNTPIG 250
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
K+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+++ Y+++G+ ++ + + EE G
Sbjct: 251 RDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSMLSYVSVGAKSHVVRQIFEESGV 310
Query: 515 ENFE 518
+ +
Sbjct: 311 QYLD 314
>gi|343128996|gb|AEL88421.1| RNA polymerase II [Metzgeria dorsipara]
Length = 207
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 165/199 (82%), Positives = 179/199 (89%), Gaps = 4/199 (2%)
Query: 259 EDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKE 314
+DIL+HICYDF DT MMELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKE
Sbjct: 1 KDILQHICYDFNDTSMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKE 60
Query: 315 ILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG 374
ILQKEMLPHVG G+FCETKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL
Sbjct: 61 ILQKEMLPHVGVGEFCETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLX 120
Query: 375 GLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGT 434
GLFR LFRKLT DVR Y+QKCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N AG
Sbjct: 121 GLFRMLFRKLTKDVRGYLQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGV 180
Query: 435 RAGVSQVLNCLTYASTFTY 453
RAGVSQVLN LTYAST ++
Sbjct: 181 RAGVSQVLNRLTYASTLSH 199
>gi|88976128|gb|ABD59035.1| RNA polymerase II second largest subunit [Cylindrobasidium
evolvens]
Length = 763
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 175/325 (53%), Positives = 224/325 (68%), Gaps = 15/325 (4%)
Query: 197 VAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFT 256
+AE+ S+ E + S V M R + S G I AT+PYI+ +IPI ++FRALG
Sbjct: 1 LAEIRSLVEKGGKTVSQFQVKMYHRHQER--SLGNIIKATVPYIKVDIPIWVVFRALGVI 58
Query: 257 ADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYA 312
+D DILEHICYD QDTQM+E+L+P +++ F IQ+++ +IG RG G++REK I+YA
Sbjct: 59 SDRDILEHICYDLQDTQMLEMLKPCIDDGFVIQDREVALDFIGNRGTQTGLSREKRIRYA 118
Query: 313 KEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL 372
+EILQKEMLPH+ + E+KKAY+FG++IHRLL+ AL RR DDRDH+G KRLDLAGPL
Sbjct: 119 QEILQKEMLPHISMSEGSESKKAYFFGYMIHRLLMAALERRELDDRDHFGKKRLDLAGPL 178
Query: 373 LGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNA 431
L LFR LFRKLT DV ++QKCV+ K+ IK TIT GLKYSLATGNWG Q +
Sbjct: 179 LANLFRMLFRKLTRDVYRHLQKCVETRKEFIPNQGIKHHTITNGLKYSLATGNWGDQKKS 238
Query: 432 AGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQA 483
T+AGVSQVLN TYAST ++ K+AKPRQLHN WGM+ QA
Sbjct: 239 MSTKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNHHWGMVXXXXXXXXQA 298
Query: 484 CGLVKNLALMVYITIGSAAYPILEF 508
CGLVKNL+LM I++GS + P++EF
Sbjct: 299 CGLVKNLSLMACISVGSMSAPVIEF 323
>gi|319771070|gb|ADV71907.1| RNA polymerase II second largest subunit [Rhododendron zoelleri]
gi|319771072|gb|ADV71908.1| RNA polymerase II second largest subunit [Rhododendron inundatum]
gi|319771074|gb|ADV71909.1| RNA polymerase II second largest subunit [Rhododendron solitarium]
gi|319771076|gb|ADV71910.1| RNA polymerase II second largest subunit [Rhododendron gracilentum]
gi|319771078|gb|ADV71911.1| RNA polymerase II second largest subunit [Rhododendron dielsianum]
gi|319771080|gb|ADV71912.1| RNA polymerase II second largest subunit [Rhododendron herzogii]
gi|319771082|gb|ADV71913.1| RNA polymerase II second largest subunit [Rhododendron luraluense]
gi|319771084|gb|ADV71914.1| RNA polymerase II second largest subunit [Rhododendron
inconspicuum]
gi|319771086|gb|ADV71915.1| RNA polymerase II second largest subunit [Rhododendron yelliottii]
gi|319771088|gb|ADV71916.1| RNA polymerase II second largest subunit [Rhododendron konori]
gi|319771090|gb|ADV71917.1| RNA polymerase II second largest subunit [Rhododendron superbum]
gi|319771092|gb|ADV71918.1| RNA polymerase II second largest subunit [Rhododendron
carringtoniae]
gi|319771094|gb|ADV71919.1| RNA polymerase II second largest subunit [Rhododendron lochiae]
gi|319771096|gb|ADV71920.1| RNA polymerase II second largest subunit [Rhododendron leucogigas]
gi|319771098|gb|ADV71921.1| RNA polymerase II second largest subunit [Rhododendron buxifolium]
gi|319771100|gb|ADV71922.1| RNA polymerase II second largest subunit [Rhododendron pauciflorum]
gi|319771104|gb|ADV71924.1| RNA polymerase II second largest subunit [Rhododendron album]
gi|319771106|gb|ADV71925.1| RNA polymerase II second largest subunit [Rhododendron citrinum]
gi|319771108|gb|ADV71926.1| RNA polymerase II second largest subunit [Rhododendron aequabile]
gi|319771110|gb|ADV71927.1| RNA polymerase II second largest subunit [Rhododendron edanoi]
gi|319771112|gb|ADV71928.1| RNA polymerase II second largest subunit [Rhododendron maxwellii]
gi|319771116|gb|ADV71930.1| RNA polymerase II second largest subunit [Rhododendron alborugosum]
gi|319771120|gb|ADV71932.1| RNA polymerase II second largest subunit [Rhododendron ruttenii]
gi|319771122|gb|ADV71933.1| RNA polymerase II second largest subunit [Rhododendron radians]
gi|319771124|gb|ADV71934.1| RNA polymerase II second largest subunit [Rhododendron
jasminiflorum]
gi|319771126|gb|ADV71935.1| RNA polymerase II second largest subunit [Rhododendron suaveolens]
gi|319771128|gb|ADV71936.1| RNA polymerase II second largest subunit [Rhododendron arenicola]
gi|319771130|gb|ADV71937.1| RNA polymerase II second largest subunit [Rhododendron zollingeri]
gi|319771132|gb|ADV71938.1| RNA polymerase II second largest subunit [Rhododendron pudorinum]
gi|319771134|gb|ADV71939.1| RNA polymerase II second largest subunit [Rhododendron alternans]
gi|319771136|gb|ADV71940.1| RNA polymerase II second largest subunit [Rhododendron renschianum]
gi|319771138|gb|ADV71941.1| RNA polymerase II second largest subunit [Rhododendron rhodopus]
gi|319771140|gb|ADV71942.1| RNA polymerase II second largest subunit [Rhododendron javanicum]
gi|319771142|gb|ADV71943.1| RNA polymerase II second largest subunit [Rhododendron
rarilepidotum]
gi|319771144|gb|ADV71944.1| RNA polymerase II second largest subunit [Rhododendron brookeanum]
gi|319771146|gb|ADV71945.1| RNA polymerase II second largest subunit [Rhododendron
crassifolium]
gi|319771152|gb|ADV71948.1| RNA polymerase II second largest subunit [Rhododendron malayanum]
gi|319771154|gb|ADV71949.1| RNA polymerase II second largest subunit [Rhododendron himantodes]
gi|319771156|gb|ADV71950.1| RNA polymerase II second largest subunit [Rhododendron robinsonii]
gi|319771158|gb|ADV71951.1| RNA polymerase II second largest subunit [Rhododendron kawakamii]
gi|319771160|gb|ADV71952.1| RNA polymerase II second largest subunit [Rhododendron rushforthii]
gi|319771162|gb|ADV71953.1| RNA polymerase II second largest subunit [Rhododendron asperulum]
gi|319771164|gb|ADV71954.1| RNA polymerase II second largest subunit [Rhododendron emarginatum]
gi|319771166|gb|ADV71955.1| RNA polymerase II second largest subunit [Rhododendron perakense]
gi|319771168|gb|ADV71956.1| RNA polymerase II second largest subunit [Rhododendron
meliphagidum]
gi|319771170|gb|ADV71957.1| RNA polymerase II second largest subunit [Rhododendron
quadrasianum]
gi|319771172|gb|ADV71958.1| RNA polymerase II second largest subunit [Rhododendron
gaultheriifolium]
gi|319771174|gb|ADV71959.1| RNA polymerase II second largest subunit [Rhododendron ericoides]
gi|319771176|gb|ADV71960.1| RNA polymerase II second largest subunit [Rhododendron retusum]
gi|319771178|gb|ADV71961.1| RNA polymerase II second largest subunit [Rhododendron
adinophyllum]
gi|319771182|gb|ADV71963.1| RNA polymerase II second largest subunit [Rhododendron
vanderbiltianum]
gi|319771184|gb|ADV71964.1| RNA polymerase II second largest subunit [Rhododendron sulfureum]
gi|319771186|gb|ADV71965.1| RNA polymerase II second largest subunit [Rhododendron excellens]
gi|319771188|gb|ADV71966.1| RNA polymerase II second largest subunit [Rhododendron pendulum]
gi|319771190|gb|ADV71967.1| RNA polymerase II second largest subunit [Rhododendron
mucronulatum]
gi|319771192|gb|ADV71968.1| RNA polymerase II second largest subunit [Rhododendron veitchianum]
gi|319771194|gb|ADV71969.1| RNA polymerase II second largest subunit [Rhododendron edgeworthii]
gi|319771196|gb|ADV71970.1| RNA polymerase II second largest subunit [Rhododendron
xanthostephanum]
gi|319771198|gb|ADV71971.1| RNA polymerase II second largest subunit [Rhododendron hypoleucum]
gi|319771200|gb|ADV71972.1| RNA polymerase II second largest subunit [Rhododendron tomentosum]
gi|319771202|gb|ADV71973.1| RNA polymerase II second largest subunit [Rhododendron minus]
gi|319771204|gb|ADV71974.1| RNA polymerase II second largest subunit [Rhododendron macabeanum]
gi|319771206|gb|ADV71975.1| RNA polymerase II second largest subunit [Rhododendron
pseudochrysanthum]
gi|319771208|gb|ADV71976.1| RNA polymerase II second largest subunit [Rhododendron triflorum]
gi|319771210|gb|ADV71977.1| RNA polymerase II second largest subunit [Rhododendron afghanicum]
gi|319771212|gb|ADV71978.1| RNA polymerase II second largest subunit [Rhododendron
spinuliferum]
gi|319771214|gb|ADV71979.1| RNA polymerase II second largest subunit [Rhododendron virgatum]
gi|319771216|gb|ADV71980.1| RNA polymerase II second largest subunit [Rhododendron santapaui]
gi|319771218|gb|ADV71981.1| RNA polymerase II second largest subunit [Rhododendron ferrugineum]
gi|319771220|gb|ADV71982.1| RNA polymerase II second largest subunit [Rhododendron micranthum]
gi|319771222|gb|ADV71983.1| RNA polymerase II second largest subunit [Rhododendron dauricum]
gi|319771224|gb|ADV71984.1| RNA polymerase II second largest subunit [Rhododendron stamineum]
gi|319771228|gb|ADV71986.1| RNA polymerase II second largest subunit [Rhododendron
camtschaticum]
Length = 205
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 169/192 (88%), Positives = 173/192 (90%), Gaps = 8/192 (4%)
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
AYYFG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR YVQK
Sbjct: 1 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQK 60
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY 454
CVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++
Sbjct: 61 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 120
Query: 455 LSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPIL
Sbjct: 121 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 180
Query: 507 EFLEEWGTENFE 518
EFLEEWGTENFE
Sbjct: 181 EFLEEWGTENFE 192
>gi|319771118|gb|ADV71931.1| RNA polymerase II second largest subunit [Rhododendron
praetervisum]
Length = 205
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 169/192 (88%), Positives = 173/192 (90%), Gaps = 8/192 (4%)
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
AYYFG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR YVQK
Sbjct: 1 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQK 60
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY 454
CVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++
Sbjct: 61 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTMSHL 120
Query: 455 LSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPIL
Sbjct: 121 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 180
Query: 507 EFLEEWGTENFE 518
EFLEEWGTENFE
Sbjct: 181 EFLEEWGTENFE 192
>gi|319771114|gb|ADV71929.1| RNA polymerase II second largest subunit [Rhododendron rugosum]
Length = 205
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 169/192 (88%), Positives = 173/192 (90%), Gaps = 8/192 (4%)
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
AYYFG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR YVQK
Sbjct: 1 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQK 60
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY 454
CVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++
Sbjct: 61 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTXSHL 120
Query: 455 LSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPIL
Sbjct: 121 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 180
Query: 507 EFLEEWGTENFE 518
EFLEEWGTENFE
Sbjct: 181 EFLEEWGTENFE 192
>gi|270304952|gb|ACZ71414.1| RNA polymerase II second largest subunit [Metzgeria furcata]
Length = 193
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 164/193 (84%), Positives = 178/193 (92%), Gaps = 4/193 (2%)
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
TLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF IQNQQ
Sbjct: 1 TLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVIQNQQVAL 60
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHRLLLCALG
Sbjct: 61 DYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHRLLLCALG 120
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++NL +A+KAK
Sbjct: 121 RRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEINLAYAVKAK 180
Query: 412 TITGGLKYSLATG 424
TIT GLKYSLATG
Sbjct: 181 TITSGLKYSLATG 193
>gi|319771226|gb|ADV71985.1| RNA polymerase II second largest subunit [Rhododendron
moulmainense]
Length = 205
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 168/192 (87%), Positives = 173/192 (90%), Gaps = 8/192 (4%)
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
AYYFG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR YVQK
Sbjct: 1 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQK 60
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY 454
CVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAS+ ++
Sbjct: 61 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASSVSHL 120
Query: 455 LSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPIL
Sbjct: 121 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 180
Query: 507 EFLEEWGTENFE 518
EFLEEWGTENFE
Sbjct: 181 EFLEEWGTENFE 192
>gi|319771102|gb|ADV71923.1| RNA polymerase II second largest subunit [Rhododendron sumatranum]
Length = 205
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 167/192 (86%), Positives = 173/192 (90%), Gaps = 8/192 (4%)
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
AYYFG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFR+LT DV+ YVQK
Sbjct: 1 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRRLTRDVKGYVQK 60
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY 454
CVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++
Sbjct: 61 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 120
Query: 455 LSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPIL
Sbjct: 121 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 180
Query: 507 EFLEEWGTENFE 518
EFLEEWGTENFE
Sbjct: 181 EFLEEWGTENFE 192
>gi|319771150|gb|ADV71947.1| RNA polymerase II second largest subunit [Rhododendron fallacinum]
Length = 205
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 168/192 (87%), Positives = 172/192 (89%), Gaps = 8/192 (4%)
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
AYYFG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF LFRKLT DVR YVQK
Sbjct: 1 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFXMLFRKLTRDVRGYVQK 60
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY 454
CVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++
Sbjct: 61 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 120
Query: 455 LSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPIL
Sbjct: 121 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 180
Query: 507 EFLEEWGTENFE 518
EFLEEWGTENFE
Sbjct: 181 EFLEEWGTENFE 192
>gi|319771180|gb|ADV71962.1| RNA polymerase II second largest subunit [Rhododendron
vaccinioides]
Length = 205
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 168/192 (87%), Positives = 172/192 (89%), Gaps = 8/192 (4%)
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
AYYFG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR YVQK
Sbjct: 1 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQK 60
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY 454
CVDNGKDV LQFAIKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++
Sbjct: 61 CVDNGKDVYLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 120
Query: 455 LSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPIL
Sbjct: 121 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 180
Query: 507 EFLEEWGTENFE 518
EFLEEWGTENFE
Sbjct: 181 EFLEEWGTENFE 192
>gi|319771148|gb|ADV71946.1| RNA polymerase II second largest subunit [Rhododendron apoanum]
Length = 205
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 167/192 (86%), Positives = 172/192 (89%), Gaps = 8/192 (4%)
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
AYYFG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR +FRKLT DVR YVQK
Sbjct: 1 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMVFRKLTRDVRGYVQK 60
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY 454
CVDNGKDVNLQFAIKAKTIT GLKYS ATGNWGQ NAAGTRAGVSQVLN LTYAST ++
Sbjct: 61 CVDNGKDVNLQFAIKAKTITSGLKYSPATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 120
Query: 455 LSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPIL
Sbjct: 121 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 180
Query: 507 EFLEEWGTENFE 518
EFLEEWGTENFE
Sbjct: 181 EFLEEWGTENFE 192
>gi|270305004|gb|ACZ71440.1| RNA polymerase II second largest subunit [Metzgeria furcata]
Length = 196
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 164/196 (83%), Positives = 176/196 (89%), Gaps = 4/196 (2%)
Query: 255 FTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIK 310
F A +DIL+HICYDF DT MMELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IK
Sbjct: 1 FVAYKDILQHICYDFNDTSMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIK 60
Query: 311 YAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 370
YAKEILQKEMLPHVG G+FCETKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAG
Sbjct: 61 YAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 120
Query: 371 PLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGN 430
PLLGGLFR LFRKLT DVR Y+QKCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N
Sbjct: 121 PLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQAN 180
Query: 431 AAGTRAGVSQVLNCLT 446
AG RAGVSQVLN LT
Sbjct: 181 TAGVRAGVSQVLNRLT 196
>gi|319771068|gb|ADV71906.1| RNA polymerase II second largest subunit [Rhododendron rarum]
Length = 205
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 168/192 (87%), Positives = 172/192 (89%), Gaps = 8/192 (4%)
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
AYYFG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR YVQK
Sbjct: 1 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQK 60
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY 454
CVDNGKDVNLQFAIKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++
Sbjct: 61 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 120
Query: 455 LSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
KLAKPRQLHNSQWGMMCPAETPEGQA GLVKNLALMVYIT+GSAAYPIL
Sbjct: 121 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQAWGLVKNLALMVYITVGSAAYPIL 180
Query: 507 EFLEEWGTENFE 518
EFLEEWGTENFE
Sbjct: 181 EFLEEWGTENFE 192
>gi|319771854|gb|ADV72299.1| RNA polymerase II second largest subunit [Rhododendron rarum]
gi|319771856|gb|ADV72300.1| RNA polymerase II second largest subunit [Rhododendron zoelleri]
gi|319771858|gb|ADV72301.1| RNA polymerase II second largest subunit [Rhododendron inundatum]
gi|319771860|gb|ADV72302.1| RNA polymerase II second largest subunit [Rhododendron solitarium]
gi|319771862|gb|ADV72303.1| RNA polymerase II second largest subunit [Rhododendron gracilentum]
gi|319771864|gb|ADV72304.1| RNA polymerase II second largest subunit [Rhododendron dielsianum]
gi|319771866|gb|ADV72305.1| RNA polymerase II second largest subunit [Rhododendron herzogii]
gi|319771868|gb|ADV72306.1| RNA polymerase II second largest subunit [Rhododendron luraluense]
gi|319771870|gb|ADV72307.1| RNA polymerase II second largest subunit [Rhododendron
inconspicuum]
gi|319771872|gb|ADV72308.1| RNA polymerase II second largest subunit [Rhododendron yelliottii]
gi|319771874|gb|ADV72309.1| RNA polymerase II second largest subunit [Rhododendron konori]
gi|319771878|gb|ADV72311.1| RNA polymerase II second largest subunit [Rhododendron
carringtoniae]
gi|319771880|gb|ADV72312.1| RNA polymerase II second largest subunit [Rhododendron lochiae]
gi|319771882|gb|ADV72313.1| RNA polymerase II second largest subunit [Rhododendron leucogigas]
gi|319771884|gb|ADV72314.1| RNA polymerase II second largest subunit [Rhododendron buxifolium]
gi|319771886|gb|ADV72315.1| RNA polymerase II second largest subunit [Rhododendron pauciflorum]
gi|319771888|gb|ADV72316.1| RNA polymerase II second largest subunit [Rhododendron sumatranum]
gi|319771890|gb|ADV72317.1| RNA polymerase II second largest subunit [Rhododendron album]
gi|319771892|gb|ADV72318.1| RNA polymerase II second largest subunit [Rhododendron citrinum]
gi|319771894|gb|ADV72319.1| RNA polymerase II second largest subunit [Rhododendron aequabile]
gi|319771896|gb|ADV72320.1| RNA polymerase II second largest subunit [Rhododendron edanoi]
gi|319771898|gb|ADV72321.1| RNA polymerase II second largest subunit [Rhododendron maxwellii]
gi|319771900|gb|ADV72322.1| RNA polymerase II second largest subunit [Rhododendron rugosum]
gi|319771902|gb|ADV72323.1| RNA polymerase II second largest subunit [Rhododendron alborugosum]
gi|319771904|gb|ADV72324.1| RNA polymerase II second largest subunit [Rhododendron
praetervisum]
gi|319771906|gb|ADV72325.1| RNA polymerase II second largest subunit [Rhododendron ruttenii]
gi|319771908|gb|ADV72326.1| RNA polymerase II second largest subunit [Rhododendron radians]
gi|319771910|gb|ADV72327.1| RNA polymerase II second largest subunit [Rhododendron
jasminiflorum]
gi|319771912|gb|ADV72328.1| RNA polymerase II second largest subunit [Rhododendron suaveolens]
gi|319771914|gb|ADV72329.1| RNA polymerase II second largest subunit [Rhododendron arenicola]
gi|319771916|gb|ADV72330.1| RNA polymerase II second largest subunit [Rhododendron zollingeri]
gi|319771918|gb|ADV72331.1| RNA polymerase II second largest subunit [Rhododendron pudorinum]
gi|319771920|gb|ADV72332.1| RNA polymerase II second largest subunit [Rhododendron alternans]
gi|319771922|gb|ADV72333.1| RNA polymerase II second largest subunit [Rhododendron renschianum]
gi|319771924|gb|ADV72334.1| RNA polymerase II second largest subunit [Rhododendron rhodopus]
gi|319771926|gb|ADV72335.1| RNA polymerase II second largest subunit [Rhododendron javanicum]
gi|319771928|gb|ADV72336.1| RNA polymerase II second largest subunit [Rhododendron
rarilepidotum]
gi|319771930|gb|ADV72337.1| RNA polymerase II second largest subunit [Rhododendron brookeanum]
gi|319771932|gb|ADV72338.1| RNA polymerase II second largest subunit [Rhododendron
crassifolium]
gi|319771934|gb|ADV72339.1| RNA polymerase II second largest subunit [Rhododendron apoanum]
gi|319771936|gb|ADV72340.1| RNA polymerase II second largest subunit [Rhododendron fallacinum]
gi|319771938|gb|ADV72341.1| RNA polymerase II second largest subunit [Rhododendron malayanum]
gi|319771940|gb|ADV72342.1| RNA polymerase II second largest subunit [Rhododendron himantodes]
gi|319771942|gb|ADV72343.1| RNA polymerase II second largest subunit [Rhododendron robinsonii]
gi|319771944|gb|ADV72344.1| RNA polymerase II second largest subunit [Rhododendron kawakamii]
gi|319771946|gb|ADV72345.1| RNA polymerase II second largest subunit [Rhododendron rushforthii]
gi|319771950|gb|ADV72347.1| RNA polymerase II second largest subunit [Rhododendron emarginatum]
gi|319771952|gb|ADV72348.1| RNA polymerase II second largest subunit [Rhododendron perakense]
gi|319771954|gb|ADV72349.1| RNA polymerase II second largest subunit [Rhododendron
meliphagidum]
gi|319771956|gb|ADV72350.1| RNA polymerase II second largest subunit [Rhododendron
quadrasianum]
gi|319771958|gb|ADV72351.1| RNA polymerase II second largest subunit [Rhododendron
gaultheriifolium]
gi|319771960|gb|ADV72352.1| RNA polymerase II second largest subunit [Rhododendron ericoides]
gi|319771962|gb|ADV72353.1| RNA polymerase II second largest subunit [Rhododendron retusum]
gi|319771964|gb|ADV72354.1| RNA polymerase II second largest subunit [Rhododendron
adinophyllum]
gi|319771966|gb|ADV72355.1| RNA polymerase II second largest subunit [Rhododendron
vaccinioides]
gi|319771968|gb|ADV72356.1| RNA polymerase II second largest subunit [Rhododendron
vanderbiltianum]
gi|319771970|gb|ADV72357.1| RNA polymerase II second largest subunit [Rhododendron sulfureum]
gi|319771972|gb|ADV72358.1| RNA polymerase II second largest subunit [Rhododendron excellens]
gi|319771974|gb|ADV72359.1| RNA polymerase II second largest subunit [Rhododendron pendulum]
gi|319771976|gb|ADV72360.1| RNA polymerase II second largest subunit [Rhododendron
mucronulatum]
gi|319771980|gb|ADV72362.1| RNA polymerase II second largest subunit [Rhododendron edgeworthii]
gi|319771982|gb|ADV72363.1| RNA polymerase II second largest subunit [Rhododendron
xanthostephanum]
gi|319771984|gb|ADV72364.1| RNA polymerase II second largest subunit [Rhododendron hypoleucum]
gi|319771986|gb|ADV72365.1| RNA polymerase II second largest subunit [Rhododendron tomentosum]
gi|319771988|gb|ADV72366.1| RNA polymerase II second largest subunit [Rhododendron minus]
gi|319771990|gb|ADV72367.1| RNA polymerase II second largest subunit [Rhododendron macabeanum]
gi|319771994|gb|ADV72369.1| RNA polymerase II second largest subunit [Rhododendron triflorum]
gi|319771996|gb|ADV72370.1| RNA polymerase II second largest subunit [Rhododendron afghanicum]
gi|319771998|gb|ADV72371.1| RNA polymerase II second largest subunit [Rhododendron
spinuliferum]
gi|319772000|gb|ADV72372.1| RNA polymerase II second largest subunit [Rhododendron virgatum]
gi|319772002|gb|ADV72373.1| RNA polymerase II second largest subunit [Rhododendron santapaui]
gi|319772004|gb|ADV72374.1| RNA polymerase II second largest subunit [Rhododendron ferrugineum]
gi|319772006|gb|ADV72375.1| RNA polymerase II second largest subunit [Rhododendron micranthum]
gi|319772008|gb|ADV72376.1| RNA polymerase II second largest subunit [Rhododendron dauricum]
gi|319772012|gb|ADV72378.1| RNA polymerase II second largest subunit [Rhododendron
moulmainense]
gi|319772014|gb|ADV72379.1| RNA polymerase II second largest subunit [Rhododendron
camtschaticum]
Length = 184
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 166/184 (90%), Positives = 172/184 (93%), Gaps = 4/184 (2%)
Query: 130 VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
VPIMLRSSYCTLYQNS+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTNHVYVFKKR
Sbjct: 1 VPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 60
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
QPNKYAYVAEV SMAESQNRPPST+FV MLSRTSAKGGSSGQYI ATLPYIRTEIPIII+
Sbjct: 61 QPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIV 120
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
FRALGF AD+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRGATVGVT+
Sbjct: 121 FRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTK 180
Query: 306 EKMI 309
EK I
Sbjct: 181 EKRI 184
>gi|319771948|gb|ADV72346.1| RNA polymerase II second largest subunit [Rhododendron asperulum]
Length = 184
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 165/184 (89%), Positives = 172/184 (93%), Gaps = 4/184 (2%)
Query: 130 VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
VPIMLRSSYCTLYQNS+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTNHVYVFKKR
Sbjct: 1 VPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 60
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
QPNKYAYVAEV SMAESQNRPPST+FV MLSRTSAKGGSSGQYI ATLPYIRTEIPII++
Sbjct: 61 QPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIVV 120
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
FRALGF AD+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRGATVGVT+
Sbjct: 121 FRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTK 180
Query: 306 EKMI 309
EK I
Sbjct: 181 EKRI 184
>gi|319771978|gb|ADV72361.1| RNA polymerase II second largest subunit [Rhododendron veitchianum]
Length = 184
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 165/184 (89%), Positives = 171/184 (92%), Gaps = 4/184 (2%)
Query: 130 VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
VPIMLRSSYCTLYQNS+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTNHVYVFKKR
Sbjct: 1 VPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 60
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
QPNKYAYVA V SMAESQNRPPST+FV MLSRTSAKGGSSGQYI ATLPYIRTEIPIII+
Sbjct: 61 QPNKYAYVAXVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIV 120
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
FRALGF AD+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRGATVGVT+
Sbjct: 121 FRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTK 180
Query: 306 EKMI 309
EK I
Sbjct: 181 EKRI 184
>gi|319771992|gb|ADV72368.1| RNA polymerase II second largest subunit [Rhododendron
pseudochrysanthum]
Length = 184
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 165/184 (89%), Positives = 171/184 (92%), Gaps = 4/184 (2%)
Query: 130 VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
VPIMLRSSYCTLYQNS+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTNHVYVFKKR
Sbjct: 1 VPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 60
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
QPNKYAYVAEV SMAESQNRPPST+FV MLSRTSAKGGSSGQ I ATLPYIRTEIPIII+
Sbjct: 61 QPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQXIRATLPYIRTEIPIIIV 120
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
FRALGF AD+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRGATVGVT+
Sbjct: 121 FRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTK 180
Query: 306 EKMI 309
EK I
Sbjct: 181 EKRI 184
>gi|319772010|gb|ADV72377.1| RNA polymerase II second largest subunit [Rhododendron stamineum]
Length = 184
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 165/184 (89%), Positives = 171/184 (92%), Gaps = 4/184 (2%)
Query: 130 VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
VPIMLRSSYCTLYQNS+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTNHVYVFKKR
Sbjct: 1 VPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 60
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
QPNKYAYVAEV SMAESQNRPPST+FV MLSRTSAKGGSSGQYI ATLPYIRTEIPIII+
Sbjct: 61 QPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIV 120
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
FRALGF AD+DILEHI YDF DTQMMELLRPSLEEAF IQNQQ YIGKRGATVGVT+
Sbjct: 121 FRALGFVADKDILEHIXYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTK 180
Query: 306 EKMI 309
EK I
Sbjct: 181 EKRI 184
>gi|319771876|gb|ADV72310.1| RNA polymerase II second largest subunit [Rhododendron superbum]
Length = 184
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 165/184 (89%), Positives = 171/184 (92%), Gaps = 4/184 (2%)
Query: 130 VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
VPIML SSYCTLYQNS+K LTELGECPYD+GGYFIINGSEKVLIAQEKMSTNHVYVFKKR
Sbjct: 1 VPIMLGSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 60
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
QPNKYAYVAEV SMAESQNRPPST+FV MLSRTSAKGGSSGQYI ATLPYIRTEIPIII+
Sbjct: 61 QPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIV 120
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
FRALGF AD+DILEHICYDF DTQMMELLRPSLEEAF IQNQQ YIGKRGATVGVT+
Sbjct: 121 FRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTK 180
Query: 306 EKMI 309
EK I
Sbjct: 181 EKRI 184
>gi|413934333|gb|AFW68884.1| hypothetical protein ZEAMMB73_253679 [Zea mays]
Length = 690
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 168/218 (77%), Positives = 176/218 (80%), Gaps = 22/218 (10%)
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
GSSGQY+ ATLPYIR IPIII+FRALGF AD+ ILEHICYDF DTQMMELLRPSLEEAF
Sbjct: 347 GSSGQYVCATLPYIRANIPIIIVFRALGFVADKGILEHICYDFSDTQMMELLRPSLEEAF 406
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQNQQ YIGK GATVGVTREK IKYAKEILQKEML G+ CETKK YYFG+II
Sbjct: 407 VIQNQQVALDYIGKHGATVGVTREKRIKYAKEILQKEMLR---VGELCETKKTYYFGYII 463
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLL+CAL RRAEDDRDHYGNKRLDLAGPLLGGLFR CVDNGK+V
Sbjct: 464 HRLLMCALSRRAEDDRDHYGNKRLDLAGPLLGGLFRM---------------CVDNGKEV 508
Query: 403 NLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQ 440
N QFAIKAKT+T GLKYSLATGN GQ N AGTRAGVSQ
Sbjct: 509 NFQFAIKAKTVTSGLKYSLATGNRGQANQAGTRAGVSQ 546
>gi|413934332|gb|AFW68883.1| hypothetical protein ZEAMMB73_253679 [Zea mays]
Length = 462
Score = 334 bits (856), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 168/218 (77%), Positives = 176/218 (80%), Gaps = 22/218 (10%)
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
GSSGQY+ ATLPYIR IPIII+FRALGF AD+ ILEHICYDF DTQMMELLRPSLEEAF
Sbjct: 119 GSSGQYVCATLPYIRANIPIIIVFRALGFVADKGILEHICYDFSDTQMMELLRPSLEEAF 178
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQNQQ YIGK GATVGVTREK IKYAKEILQKEML G+ CETKK YYFG+II
Sbjct: 179 VIQNQQVALDYIGKHGATVGVTREKRIKYAKEILQKEMLR---VGELCETKKTYYFGYII 235
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLL+CAL RRAEDDRDHYGNKRLDLAGPLLGGLFR CVDNGK+V
Sbjct: 236 HRLLMCALSRRAEDDRDHYGNKRLDLAGPLLGGLFRM---------------CVDNGKEV 280
Query: 403 NLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQ 440
N QFAIKAKT+T GLKYSLATGN GQ N AGTRAGVSQ
Sbjct: 281 NFQFAIKAKTVTSGLKYSLATGNRGQANQAGTRAGVSQ 318
>gi|432118317|gb|ELK38079.1| DNA-directed RNA polymerase II subunit RPB2 [Myotis davidii]
Length = 602
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 165/254 (64%), Positives = 190/254 (74%), Gaps = 13/254 (5%)
Query: 278 LRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETK 333
++PSL+EAF IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DF ETK
Sbjct: 7 VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFSETK 66
Query: 334 KAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQ 393
KAY+ G+++HR+L ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y Q
Sbjct: 67 KAYFLGYMVHRVLQAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ 126
Query: 394 KCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFT 452
K +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST +
Sbjct: 127 KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS 186
Query: 453 YYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYP 504
+ KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS P
Sbjct: 187 HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP 246
Query: 505 ILEFLEEWGTENFE 518
ILEFLEEW EN E
Sbjct: 247 ILEFLEEWSMENLE 260
>gi|343129006|gb|AEL88426.1| RNA polymerase II [Metzgeria pubescens]
gi|343129008|gb|AEL88427.1| RNA polymerase II [Metzgeria pubescens]
gi|343129018|gb|AEL88432.1| RNA polymerase II [Metzgeria pubescens]
gi|343129022|gb|AEL88434.1| RNA polymerase II [Metzgeria pubescens]
gi|343129024|gb|AEL88435.1| RNA polymerase II [Metzgeria pubescens]
gi|343129028|gb|AEL88437.1| RNA polymerase II [Metzgeria leptoneura]
gi|343129032|gb|AEL88439.1| RNA polymerase II [Metzgeria pubescens]
gi|343129036|gb|AEL88441.1| RNA polymerase II [Metzgeria pubescens]
gi|343129038|gb|AEL88442.1| RNA polymerase II [Metzgeria leptoneura]
gi|343129050|gb|AEL88448.1| RNA polymerase II [Metzgeria pubescens]
gi|343129052|gb|AEL88449.1| RNA polymerase II [Metzgeria pubescens]
gi|343129054|gb|AEL88450.1| RNA polymerase II [Metzgeria pubescens]
gi|343129058|gb|AEL88452.1| RNA polymerase II [Metzgeria pubescens]
gi|343129060|gb|AEL88453.1| RNA polymerase II [Metzgeria pubescens]
gi|343129064|gb|AEL88455.1| RNA polymerase II [Metzgeria pubescens]
gi|343129066|gb|AEL88456.1| RNA polymerase II [Metzgeria pubescens]
gi|343129068|gb|AEL88457.1| RNA polymerase II [Metzgeria pubescens]
gi|343129070|gb|AEL88458.1| RNA polymerase II [Metzgeria pubescens]
gi|343129076|gb|AEL88461.1| RNA polymerase II [Metzgeria pubescens]
Length = 188
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 158/188 (84%), Positives = 169/188 (89%), Gaps = 4/188 (2%)
Query: 269 FQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHV 324
F DT MMELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHV
Sbjct: 1 FNDTSMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHV 60
Query: 325 GTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKL 384
G G+FCETKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKL
Sbjct: 61 GVGEFCETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKL 120
Query: 385 TGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNC 444
T DVR Y+QKCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN
Sbjct: 121 TKDVRGYLQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNR 180
Query: 445 LTYASTFT 452
LTYAST +
Sbjct: 181 LTYASTLS 188
>gi|343129026|gb|AEL88436.1| RNA polymerase II [Metzgeria pubescens]
gi|343129030|gb|AEL88438.1| RNA polymerase II [Metzgeria pubescens]
gi|343129034|gb|AEL88440.1| RNA polymerase II [Metzgeria pubescens]
gi|343129062|gb|AEL88454.1| RNA polymerase II [Metzgeria pubescens]
Length = 188
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 157/188 (83%), Positives = 168/188 (89%), Gaps = 4/188 (2%)
Query: 269 FQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHV 324
F DT MMELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHV
Sbjct: 1 FNDTSMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHV 60
Query: 325 GTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKL 384
G G+FCETKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG LFR LFRKL
Sbjct: 61 GVGEFCETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRMLFRKL 120
Query: 385 TGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNC 444
T DVR Y+QKCVDNGK++NL +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN
Sbjct: 121 TKDVRGYLQKCVDNGKEINLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNR 180
Query: 445 LTYASTFT 452
LTYAST +
Sbjct: 181 LTYASTLS 188
>gi|412994130|emb|CCO14641.1| RNA polymerase II second largest subunit (Partial), partial
[Bathycoccus prasinos]
Length = 332
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 173/303 (57%), Positives = 207/303 (68%), Gaps = 34/303 (11%)
Query: 2 MMEEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIE 61
M +E + DE+EE QE+AW VISA+FEEKGLVRQQLDSF+EF Q+TMQEIVDE + E
Sbjct: 1 MSDEGMVTMDEDEEIGQEDAWTVISAFFEEKGLVRQQLDSFNEFIQHTMQEIVDEMSTFE 60
Query: 62 IRPESQHNPGQQSD----------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
+ PE QH PG++ D F +IYLSKPM+TE+DG T+TLF K ARLRNLTYSAP
Sbjct: 61 LSPEHQHVPGEEMDESEKKTVSVSFGQIYLSKPMVTEADGMTSTLFPKEARLRNLTYSAP 120
Query: 112 LYVDVTKRVIKKGHDGEE---------------------VPIMLRSSYCTLYQNSQKALT 150
LYVD+ K++ + EE VPIMLRS YC+L+ ++ K LT
Sbjct: 121 LYVDMRKKITTVTQNSEEEGGGEKINEEIEDINKVFIGKVPIMLRSEYCSLHDHTDKELT 180
Query: 151 ELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRP 210
ELGECPYDEGGYFIINGSEKVLIAQE+M+ N VYVF KRQP+K YV+E S ES R
Sbjct: 181 ELGECPYDEGGYFIINGSEKVLIAQERMAANSVYVFMKRQPSKVLYVSECRSQPESGIRG 240
Query: 211 PSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQ 270
S V L +G +S +H TLPYIR++IPI I FRALGF AD+DILEHI YDF
Sbjct: 241 ASACVVKQL---HGQGKNSPGPLHVTLPYIRSDIPIFIAFRALGFVADKDILEHIVYDFG 297
Query: 271 DTQ 273
D +
Sbjct: 298 DNE 300
>gi|270305052|gb|ACZ71464.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
Length = 182
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 154/181 (85%), Positives = 165/181 (91%), Gaps = 4/181 (2%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETK AY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKXAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK+ N
Sbjct: 121 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEXN 180
Query: 404 L 404
L
Sbjct: 181 L 181
>gi|396941926|gb|AFN89680.1| RNA polymerase II, partial [Candida tepae]
Length = 773
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 150/257 (58%), Positives = 197/257 (76%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE FFIQ+++ YIG+RG+ +G++REK I+YA++ILQKE+LPH+ +
Sbjct: 1 LEMLKPCIEEGFFIQDREVALDYIGRRGSAMGISREKRIRYARDILQKELLPHITQEEGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET+KA++ G+++HR+LLCAL RR +DDRDH+G KRLDLAGPLL LFR LFRKLT D+
Sbjct: 61 ETRKAFFLGYMVHRMLLCALERREQDDRDHFGKKRLDLAGPLLANLFRLLFRKLTKDIYR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+QKCV+ KD NL A+K+ T+T GLKYSLATGNWG Q A +RAGVSQVLN T++S
Sbjct: 121 YMQKCVETNKDFNLTLAVKSNTLTNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYTFSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+A+PRQLHN+ WG +CPAETPEGQACGLVKNL+LM I++GS
Sbjct: 181 TLSHXRRTNTPIGRDGKIARPRQLHNTHWGFVCPAETPEGQACGLVKNLSLMSCISVGSP 240
Query: 502 AYPILEFLEEWGTENFE 518
+ PI+ FLEEWG E E
Sbjct: 241 SQPIVYFLEEWGMEPLE 257
>gi|396941931|gb|AFN89682.1| RNA polymerase II, partial [Sugiyamaella smithiae]
Length = 771
Score = 325 bits (833), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 149/257 (57%), Positives = 196/257 (76%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE FF+Q+++ YIG+RG+ +G+ REK I+YA++ILQKE+LPH+ +
Sbjct: 1 LEMLKPCIEEGFFVQDREVALDYIGRRGSAMGINREKRIRYARDILQKELLPHITQEEGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET+KA++ G+++HR+LLCAL RR DDRDH+G KRLDLAGPLL LFR LF+KLT D+
Sbjct: 61 ETRKAFFLGYMVHRMLLCALERREPDDRDHFGKKRLDLAGPLLANLFRMLFKKLTKDIYR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+QKCV+ KD NL A+K+ TIT GLKYSLATGNWG Q A +RAGVSQVLN T++S
Sbjct: 121 YMQKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYTFSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+A+PRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++GS
Sbjct: 181 TLSHLRRTNTPIGRDGKIARPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSP 240
Query: 502 AYPILEFLEEWGTENFE 518
+ PI+ FLEEWG E E
Sbjct: 241 SQPIIYFLEEWGMEPLE 257
>gi|396941918|gb|AFN89676.1| RNA polymerase II, partial [Zygoascus hellenicus]
Length = 779
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 150/257 (58%), Positives = 196/257 (76%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE FF+Q+++ YIG+RG+ +G+ REK I+YA++ILQKE+LPH+ +
Sbjct: 1 VEMLKPCIEEGFFVQDREVALDYIGRRGSAMGINREKRIRYARDILQKELLPHITQEEGY 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET+KA++ G+++HR+LLCAL RR EDDRDH+G KRLDLAGPLL LFR LF+KLT D+
Sbjct: 61 ETRKAFFLGYMVHRMLLCALERRGEDDRDHFGKKRLDLAGPLLANLFRMLFKKLTKDIYR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+QKCV+ KD L A+K+ TIT GLKYSLATGNWG Q A TRAGVSQVLN T++S
Sbjct: 121 YMQKCVETNKDFILTLAVKSSTITNGLKYSLATGNWGDQKKAMSTRAGVSQVLNRYTFSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+A+PRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++GS
Sbjct: 181 TLSHLRRTNTPIGRDGKIARPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGSP 240
Query: 502 AYPILEFLEEWGTENFE 518
+ PI+ FLEEWG E E
Sbjct: 241 SQPIIYFLEEWGMEPLE 257
>gi|396941916|gb|AFN89675.1| RNA polymerase II, partial [Nadsonia fulvescens]
Length = 782
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 151/257 (58%), Positives = 195/257 (75%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EEAF IQ+++ YIG+RG+ +G+ REK ++YA++I+QKE+LPH+ +
Sbjct: 1 LEMLKPCIEEAFVIQDREVALDYIGRRGSAMGINREKRVRYARDIMQKELLPHITQEEGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET+KAY+ G+++HR+LLCAL R +DDRDH+G KRLDLAGPLL LFR LF+KLT D+
Sbjct: 61 ETRKAYFLGYMVHRMLLCALERADQDDRDHFGKKRLDLAGPLLANLFRMLFKKLTKDIYR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+QKCV+ KD NL A+KA TIT GLKYSLATGNWG Q A RAGVSQVLN T++S
Sbjct: 121 YMQKCVETNKDFNLTLAVKANTITNGLKYSLATGNWGDQKKAMSARAGVSQVLNRYTFSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++GS
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMACISVGSP 240
Query: 502 AYPILEFLEEWGTENFE 518
+ PI+ FLEEWG E E
Sbjct: 241 SQPIVYFLEEWGMEPLE 257
>gi|396941939|gb|AFN89686.1| RNA polymerase II, partial [Yarrowia lipolytica]
Length = 780
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 148/257 (57%), Positives = 197/257 (76%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EEAF IQ+++ YIG+RG+ VGV RE+ ++YA++ILQKE+LPH+ +
Sbjct: 1 LEMLKPCIEEAFVIQDREVALDYIGRRGSAVGVNRERRVRYARDILQKELLPHITQEEGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET+KAY+ G+++HR+LL ALGR+ DDRDH+G KRLDLAGPL+ G+FR LF+KLT D+
Sbjct: 61 ETRKAYFLGYMVHRMLLVALGRKEPDDRDHFGKKRLDLAGPLMAGIFRMLFKKLTKDIYR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+ KCV+ KD NL A+K+ TIT GLKYSLATGNWG Q A +RAGVSQVLN T+AS
Sbjct: 121 YMLKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYTFAS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTP 240
Query: 502 AYPILEFLEEWGTENFE 518
++PI+ FL+EWG E E
Sbjct: 241 SFPIINFLDEWGMEPLE 257
>gi|396941924|gb|AFN89679.1| RNA polymerase II, partial [Candida santjacobensis]
Length = 777
Score = 324 bits (830), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 148/256 (57%), Positives = 195/256 (76%), Gaps = 13/256 (5%)
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
E+L+P +EE FF+Q+++ YIG+RG+ +G+ REK I+YA++ILQKE+LPH+ + E
Sbjct: 1 EMLKPCIEEGFFVQDREVALDYIGRRGSAMGINREKRIRYARDILQKELLPHITQEEGFE 60
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
T+KA++ G+++HR+LLCAL RR DDRDH+G KRLDLAGPLL LFR LF+K+T D+ Y
Sbjct: 61 TRKAFFLGYMVHRMLLCALERREPDDRDHFGKKRLDLAGPLLANLFRMLFKKMTKDIYRY 120
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAST 450
+QKCV+ KD NL A+K+ TIT GLKYSLATGNWG Q A +RAGVSQVLN T++ST
Sbjct: 121 MQKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYTFSST 180
Query: 451 FTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAA 502
++ K+A+PRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++GS +
Sbjct: 181 LSHLRRTNTPIGRDGKIARPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSPS 240
Query: 503 YPILEFLEEWGTENFE 518
PI+ FLEEWG E E
Sbjct: 241 QPIIYFLEEWGMEPLE 256
>gi|270304978|gb|ACZ71427.1| RNA polymerase II second largest subunit [Metzgeria furcata]
Length = 178
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 152/178 (85%), Positives = 164/178 (92%), Gaps = 4/178 (2%)
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF I
Sbjct: 1 SGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVI 60
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
QNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHR
Sbjct: 61 QNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHR 120
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNGK++
Sbjct: 121 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEI 178
>gi|396941961|gb|AFN89697.1| RNA polymerase II, partial [Candida caseinolytica]
Length = 775
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 151/256 (58%), Positives = 195/256 (76%), Gaps = 13/256 (5%)
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
E+L+P +EEAF IQ+++ YIG+RG+ +G+ R+K ++YA++I+QKE+LPH+ + E
Sbjct: 1 EMLKPCIEEAFVIQDREVALDYIGRRGSALGINRDKRMRYARDIMQKELLPHITQEEGYE 60
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
T+KA++ G++IHR+LLCALGR DDRDH+G KRLDLAGPLL LFR LF+KLT DV Y
Sbjct: 61 TRKAFFLGYMIHRMLLCALGRAEVDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRY 120
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAST 450
+QKCV+ KD NL A+K+ TIT GLKYSLATGNWG Q A +RAGVSQVLN T++ST
Sbjct: 121 MQKCVETNKDFNLMLAVKSTTITNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYTFSST 180
Query: 451 FTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAA 502
++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++GS +
Sbjct: 181 LSHLRRTNTPIGRDGKLAKPRQLHNTHWGLICPAETPEGQACGLVKNLSLMSCISVGSPS 240
Query: 503 YPILEFLEEWGTENFE 518
PI+ FLEEWG E E
Sbjct: 241 QPIVLFLEEWGMEPLE 256
>gi|270304948|gb|ACZ71412.1| RNA polymerase II second largest subunit [Metzgeria furcata]
gi|270304954|gb|ACZ71415.1| RNA polymerase II second largest subunit [Metzgeria furcata]
Length = 176
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 152/176 (86%), Positives = 162/176 (92%), Gaps = 4/176 (2%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNG 399
RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+QKCVDNG
Sbjct: 121 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNG 176
>gi|396941949|gb|AFN89691.1| RNA polymerase II, partial [Galactomyces geotrichum]
Length = 775
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 148/257 (57%), Positives = 197/257 (76%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE FF+Q+++ YIG+RG+ G+TREK ++YA++ILQKE+LP++ +
Sbjct: 1 LEMLKPCIEEGFFVQDREVALDYIGRRGSATGITREKRMRYARDILQKELLPNITQQEGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET+KA++ G+++HRLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+
Sbjct: 61 ETRKAFFLGYMVHRLLLCALDRQDPDDRDHFGKKRLDLAGPLLAQLFRILFKKLTRDIYR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+QKCV+ KD NL A+K+ TIT GLKYSLATGNWG Q A TRAGVSQVLN T++S
Sbjct: 121 YMQKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSTRAGVSQVLNRYTFSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+A+PRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 TLSHLRRTNTPIGRDGKIARPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTP 240
Query: 502 AYPILEFLEEWGTENFE 518
++PI+ FLEEWG E E
Sbjct: 241 SHPIVCFLEEWGMEPLE 257
>gi|45545325|gb|AAS67510.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Dermatocarpon reticulatum]
Length = 907
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 164/367 (44%), Positives = 234/367 (63%), Gaps = 16/367 (4%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VFKK P+ + ++AE+ S + +R S V + +
Sbjct: 1 SEKVLIAQERSAGNIVQVFKKAAPSPFTHIAEIRSSVDRGSRMLSQCTVKLYRQVDGPEQ 60
Query: 228 SS-GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
+ I LPY++ +IP++++FRAL +D DILE IC+D D +MM+LL SL+E
Sbjct: 61 TKIPNPIRIQLPYVKQDIPLVVVFRALDIVSDADILEKICFDQSDKEMMDLLMGSLQEGQ 120
Query: 287 FIQN----QQYIGKRGATVGVTREKMIKYAKEILQKEMLPHVG--TGDFCETKKAYYFGH 340
IQ+ + YI +RG + + K+ +ILQKE LPH+G + +++KA++ G+
Sbjct: 121 PIQSADTARDYIARRGNNPNLKFAERQKHTTDILQKEFLPHIGQEPSNSSQSRKAFFLGY 180
Query: 341 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK 400
+++R+L CALGR DDRDH G KRLDLAGPL+ LFR F+K+ D Y+QK V++ +
Sbjct: 181 MVNRMLKCALGRSEPDDRDHLGKKRLDLAGPLMANLFRLQFQKVVRDFSRYMQKQVESDR 240
Query: 401 DVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY----- 454
++NL+ +K+ IT GLKYSLATGNWG Q +AGVSQVL+ T+AST ++
Sbjct: 241 EINLKVGLKSNIITNGLKYSLATGNWGDQKKVNQAKAGVSQVLSRYTFASTLSHLRRTNA 300
Query: 455 ---LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEE 511
K+AKPRQLHN+ WG +CPAETPEGQACGLVKNLALM +T P+++++ E
Sbjct: 301 PIGRDGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLALMTMVTNSHNTEPLVDYILE 360
Query: 512 WGTENFE 518
E+ E
Sbjct: 361 QDVESLE 367
>gi|119719204|ref|YP_919699.1| DNA-directed RNA polymerase subunit B [Thermofilum pendens Hrk 5]
gi|119524324|gb|ABL77696.1| DNA-directed RNA polymerase, subunit B' [Thermofilum pendens Hrk 5]
Length = 1130
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 191/516 (37%), Positives = 282/516 (54%), Gaps = 53/516 (10%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
++E+ W V+ AY +E GLVRQ LDSF+ F + +QEIVDE I++ ESQ G + F
Sbjct: 11 SREDRWRVVKAYVDELGLVRQHLDSFNAFLERGLQEIVDEVGGIKV--ESQ---GVEIKF 65
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE------- 129
+I + +P E+DG L ARLRN+TY+APLY+ +T V DGEE
Sbjct: 66 GKIEVGQPTFREADGSDLALTPMIARLRNITYAAPLYLTMTLYV-----DGEERRTESVY 120
Query: 130 ---VPIMLRSSYCTLYQ-NSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYV 185
+PIM++S C LY S+ + + GE PYD GGYFI+NGSE+V++ QE +S N V V
Sbjct: 121 IGSLPIMVKSKKCVLYGLKSEDEIVKYGEDPYDPGGYFIVNGSERVIVMQEDLSVNRVLV 180
Query: 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIP 245
+ A+V S+A Q P L+ K G I+A+ P ++IP
Sbjct: 181 DYGGASGSVTHTAKVFSVAAGQRSP--------LTVERTKDG----MIYASFPACPSKIP 228
Query: 246 IIILFRALGFTADEDILEHICYD--FQDTQMMELLRPSLEEAFFIQNQQYIGKRGATVGV 303
+++L RALG D++I I D Q + L+ S A + YIG R + G
Sbjct: 229 VVVLMRALGLKTDQEIAYAIGNDPIIQQEFLPVLMEQSKIAATPEEALDYIGSR-VSPGQ 287
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
R I+ A+ +L + +LPH+G G KA++ G ++ RLL LG R DD+DH N
Sbjct: 288 PRNVRIERAQAVLDENLLPHIGRGPAARISKAFFVGQMVSRLLELKLGMRGPDDKDHLAN 347
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLAT 423
KR+ AG L+ +FR+ FR+L ++ +++ +D+NL ++ IT L ++LAT
Sbjct: 348 KRIRQAGELIAQVFRSAFRQLVKEMTYSIERHTSKTRDINLVSIVRPDIITERLNHALAT 407
Query: 424 GNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNSQWGMM 473
GNW G R GVSQ+L+ Y ST ++ ++ P R+LH +QWG +
Sbjct: 408 GNW-----VGGRTGVSQILDRTNYLSTISHL--RRVVSPLSRTQPHFEARELHPTQWGRL 460
Query: 474 CPAETPEGQACGLVKNLALMVYITIGSAAYPILEFL 509
CP E+PEGQ CGLVK+LAL+ ++ G+ + + L
Sbjct: 461 CPVESPEGQNCGLVKHLALLATLSNGTDEKQVYDLL 496
>gi|332796432|ref|YP_004457932.1| RNA polymerase subunit B [Acidianus hospitalis W1]
gi|332694167|gb|AEE93634.1| RNA polymerase subunit B [Acidianus hospitalis W1]
Length = 1123
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 190/519 (36%), Positives = 280/519 (53%), Gaps = 47/519 (9%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
++ WA++ +YF+ +GLVRQ LDSF++F +N +QEI+DE +IE PG + +
Sbjct: 5 DDRWAIVESYFKSRGLVRQHLDSFNDFIKNKLQEIIDEQGEIE-----TEIPGLKIKLGK 59
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE-------EVP 131
I + KP + E+D + ARLRNLTY+AP+Y+ + ++ +GE ++P
Sbjct: 60 IRVGKPRVREADRGDREITPMEARLRNLTYAAPIYLTMIP--VENNIEGEPTEVYIGDLP 117
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IML+S + L E+GE P D GGYFIING+EKV++ QE ++TN V V + +
Sbjct: 118 IMLKSVADPTADLPAEKLVEIGEDPKDPGGYFIINGTEKVIVTQEDLATNRVLVDEGKSG 177
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFR 251
+ + A++ S P I + L ++ IH + P + IP IL R
Sbjct: 178 SNVTHTAKIISSTAGYRVP---ITIERLRDST---------IHVSFPAVPGRIPFAILMR 225
Query: 252 ALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREK 307
ALG D DI + +D ++ L PSLE+A I Q+ +IG R A +G RE
Sbjct: 226 ALGLETDRDITFAVSFD---EEIQNELLPSLEQASSITTQEDALDFIGNRVA-IGQKREN 281
Query: 308 MIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLD 367
I+ A+++L K LPH+G KKAYY G+ + +L+ LGRR DD+DHY NKRL
Sbjct: 282 RIERAEQVLDKYFLPHLGLTPADRKKKAYYLGYAVSKLIELQLGRREPDDKDHYANKRLK 341
Query: 368 LAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG 427
LAG L LFR F+ D+ ++K G+ + L ++ IT +++++ATGNW
Sbjct: 342 LAGDLFSSLFRVAFKAFVKDLVYQLEKSKVRGRRLTLNALVRPDIITERIRHAMATGNW- 400
Query: 428 QGNAAGTRAGVSQVLNCLTYASTFTYYL----SWKLAKP----RQLHNSQWGMMCPAETP 479
G R GVSQ+L+ + S ++ S +P R LH +QWG MCP ETP
Sbjct: 401 ----VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETP 456
Query: 480 EGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
EG GLVKNLAL+ I++G + + L E G E
Sbjct: 457 EGPNSGLVKNLALLAQISVGINDKIVEKMLYELGVIPLE 495
>gi|284174418|ref|ZP_06388387.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus
98/2]
gi|384433685|ref|YP_005643043.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus
98/2]
gi|167744883|pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744894|pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782145|pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782158|pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|261601839|gb|ACX91442.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus
98/2]
Length = 1124
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 197/519 (37%), Positives = 280/519 (53%), Gaps = 43/519 (8%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T +E W VI AYF+ KGLVRQ LDS+++F +N +QEI+DE +I PG +
Sbjct: 6 TIDERWRVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI-----PTEIPGLKVRL 60
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV-----P 131
+I + KP + ESD + ARLRNLTY+APL++ + + EEV P
Sbjct: 61 GKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVENNIEAEPEEVYIGDLP 120
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IML+S+ + Q + L E+GE P D GGYFI+NGSE+V++ QE ++ N V V +
Sbjct: 121 IMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTG 180
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFR 251
+ + A++ S + + R P TI K G+ H + P + +IP +IL R
Sbjct: 181 SNITHTAKIIS-STAGYRVPVTI-------ERLKDGT----FHVSFPAVPGKIPFVILMR 228
Query: 252 ALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREK 307
ALG D DI+ + D ++ L PSLE+A I N +IG R A +G RE
Sbjct: 229 ALGILTDRDIVYAVSLD---PEVQNELFPSLEQASSIANVDDALDFIGSRVA-IGQKREN 284
Query: 308 MIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLD 367
I+ A++I+ K LPH+GT KKAYY + I +++ LGRR DD+DHY NKRL
Sbjct: 285 RIEKAQQIIDKYFLPHLGTSAEDRKKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLR 344
Query: 368 LAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG 427
LAG L LFR F+ D+ ++K G+ + L+ ++ +T ++++LATGNW
Sbjct: 345 LAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRHALATGNW- 403
Query: 428 QGNAAGTRAGVSQVLNCLTYASTFTYYL----SWKLAKP----RQLHNSQWGMMCPAETP 479
G R GVSQ+L+ + S ++ S +P R LH +QWG MCP ETP
Sbjct: 404 ----VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETP 459
Query: 480 EGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
EG GLVKNLALM I +G + + L E G E
Sbjct: 460 EGPNSGLVKNLALMAQIAVGINERIVEKTLYEMGVVPVE 498
>gi|229579766|ref|YP_002838165.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
Y.G.57.14]
gi|229581565|ref|YP_002839964.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
Y.N.15.51]
gi|228010481|gb|ACP46243.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus Y.G.57.14]
gi|228012281|gb|ACP48042.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus Y.N.15.51]
Length = 1131
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 196/517 (37%), Positives = 279/517 (53%), Gaps = 43/517 (8%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
+E W VI AYF+ KGLVRQ LDS+++F +N +QEI+DE +I PG + +
Sbjct: 11 DEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI-----PTEIPGLKVRLGK 65
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV-----PIM 133
I + KP + ESD + ARLRNLTY+APL++ + + EEV PIM
Sbjct: 66 IRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVENNIEAEPEEVYIGDLPIM 125
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
L+S+ + Q + L E+GE P D GGYFI+NGSE+V++ QE ++ N V V + +
Sbjct: 126 LKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTGSN 185
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
+ A++ S + + R P TI K G+ H + P + +IP +IL RAL
Sbjct: 186 ITHTAKIIS-STAGYRVPVTI-------ERLKDGT----FHVSFPAVPGKIPFVILMRAL 233
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMI 309
G D DI+ + D ++ L PSLE+A I N +IG R A +G RE I
Sbjct: 234 GILTDRDIVYAVSLD---PEIQNELFPSLEQASSIANVDDALDFIGSRVA-IGQKRENRI 289
Query: 310 KYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLA 369
+ A++I+ K LPH+GT KKAYY + I +++ LGRR DD+DHY NKRL LA
Sbjct: 290 EKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLA 349
Query: 370 GPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQG 429
G L LFR F+ D+ ++K G+ + L+ ++ +T ++++LATGNW
Sbjct: 350 GDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRHALATGNW--- 406
Query: 430 NAAGTRAGVSQVLNCLTYASTFTYYL----SWKLAKP----RQLHNSQWGMMCPAETPEG 481
G R GVSQ+L+ + S ++ S +P R LH +QWG MCP ETPEG
Sbjct: 407 --VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPEG 464
Query: 482 QACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GLVKNLALM I +G + + L E G E
Sbjct: 465 PNSGLVKNLALMAQIAVGINERIVEKTLYEMGVVPVE 501
>gi|227830880|ref|YP_002832660.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
L.S.2.15]
gi|227457328|gb|ACP36015.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus L.S.2.15]
Length = 1131
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 196/517 (37%), Positives = 279/517 (53%), Gaps = 43/517 (8%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
+E W VI AYF+ KGLVRQ LDS+++F +N +QEI+DE +I PG + +
Sbjct: 11 DEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI-----PTEIPGLKVRLGK 65
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV-----PIM 133
I + KP + ESD + ARLRNLTY+APL++ + + EEV PIM
Sbjct: 66 IRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVENNIEAEPEEVYIGDLPIM 125
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
L+S+ + Q + L E+GE P D GGYFI+NGSE+V++ QE ++ N V V + +
Sbjct: 126 LKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTGSN 185
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
+ A++ S + + R P TI K G+ H + P + +IP +IL RAL
Sbjct: 186 ITHTAKIIS-STAGYRVPVTI-------ERLKDGT----FHVSFPAVPGKIPFVILMRAL 233
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMI 309
G D DI+ + D ++ L PSLE+A I N +IG R A +G RE I
Sbjct: 234 GILTDRDIVYAVSLD---PEIQNELFPSLEQASSIANVDDALDFIGSRVA-IGQKRENRI 289
Query: 310 KYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLA 369
+ A++I+ K LPH+GT KKAYY + I +++ LGRR DD+DHY NKRL LA
Sbjct: 290 EKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLA 349
Query: 370 GPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQG 429
G L LFR F+ D+ ++K G+ + L+ ++ +T ++++LATGNW
Sbjct: 350 GDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRHALATGNW--- 406
Query: 430 NAAGTRAGVSQVLNCLTYASTFTYYL----SWKLAKP----RQLHNSQWGMMCPAETPEG 481
G R GVSQ+L+ + S ++ S +P R LH +QWG MCP ETPEG
Sbjct: 407 --VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPEG 464
Query: 482 QACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GLVKNLALM I +G + + L E G E
Sbjct: 465 PNSGLVKNLALMAQIAVGINERIVEKTLYEMGVVPVE 501
>gi|227828173|ref|YP_002829953.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
M.14.25]
gi|229585402|ref|YP_002843904.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
M.16.27]
gi|238620363|ref|YP_002915189.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
M.16.4]
gi|385773843|ref|YP_005646410.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus HVE10/4]
gi|385776478|ref|YP_005649046.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus REY15A]
gi|227459969|gb|ACP38655.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.14.25]
gi|228020452|gb|ACP55859.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.16.27]
gi|238381433|gb|ACR42521.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.16.4]
gi|323475226|gb|ADX85832.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus REY15A]
gi|323477958|gb|ADX83196.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus HVE10/4]
Length = 1131
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 196/517 (37%), Positives = 279/517 (53%), Gaps = 43/517 (8%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
+E W VI AYF+ KGLVRQ LDS+++F +N +QEI+DE +I PG + +
Sbjct: 11 DEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI-----PTEIPGLKVRLGK 65
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV-----PIM 133
I + KP + ESD + ARLRNLTY+APL++ + + EEV PIM
Sbjct: 66 IRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVENNIEAEPEEVYIGDLPIM 125
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
L+S+ + Q + L E+GE P D GGYFI+NGSE+V++ QE ++ N V V + +
Sbjct: 126 LKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTGSN 185
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
+ A++ S + + R P TI K G+ H + P + +IP +IL RAL
Sbjct: 186 ITHTAKIIS-STAGYRVPVTI-------ERLKDGT----FHVSFPAVPGKIPFVILMRAL 233
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMI 309
G D DI+ + D ++ L PSLE+A I N +IG R A +G RE I
Sbjct: 234 GILTDRDIVYAVSLD---PEIQNELFPSLEQASSIANVDDALDFIGSRVA-IGQKRENRI 289
Query: 310 KYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLA 369
+ A++I+ K LPH+GT KKAYY + I +++ LGRR DD+DHY NKRL LA
Sbjct: 290 EKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLA 349
Query: 370 GPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQG 429
G L LFR F+ D+ ++K G+ + L+ ++ +T ++++LATGNW
Sbjct: 350 GDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRHALATGNW--- 406
Query: 430 NAAGTRAGVSQVLNCLTYASTFTYYL----SWKLAKP----RQLHNSQWGMMCPAETPEG 481
G R GVSQ+L+ + S ++ S +P R LH +QWG MCP ETPEG
Sbjct: 407 --VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPEG 464
Query: 482 QACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GLVKNLALM I +G + + L E G E
Sbjct: 465 PNSGLVKNLALMAQIAVGINERIVEKTLYEMGVVPVE 501
>gi|284998387|ref|YP_003420155.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|284446283|gb|ADB87785.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
Length = 1131
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 196/517 (37%), Positives = 279/517 (53%), Gaps = 43/517 (8%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
+E W VI AYF+ KGLVRQ LDS+++F +N +QEI+DE +I PG + +
Sbjct: 11 DEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI-----PTEIPGLKVRLGK 65
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV-----PIM 133
I + KP + ESD + ARLRNLTY+APL++ + + EEV PIM
Sbjct: 66 IRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVENNIEAEPEEVYIGDLPIM 125
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
L+S+ + Q + L E+GE P D GGYFI+NGSE+V++ QE ++ N V V + +
Sbjct: 126 LKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTGSN 185
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
+ A++ S + + R P TI K G+ H + P + +IP +IL RAL
Sbjct: 186 ITHTAKIIS-STAGYRVPVTI-------ERLKDGT----FHVSFPAVPGKIPFVILMRAL 233
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMI 309
G D DI+ + D ++ L PSLE+A I N +IG R A +G RE I
Sbjct: 234 GILTDRDIVYAVSLD---PEIQNELFPSLEQASSIANVDDALDFIGSRVA-IGQKRENRI 289
Query: 310 KYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLA 369
+ A++I+ K LPH+GT KKAYY + I +++ LGRR DD+DHY NKRL LA
Sbjct: 290 EKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLA 349
Query: 370 GPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQG 429
G L LFR F+ D+ ++K G+ + L+ ++ +T ++++LATGNW
Sbjct: 350 GDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRHALATGNW--- 406
Query: 430 NAAGTRAGVSQVLNCLTYASTFTYYL----SWKLAKP----RQLHNSQWGMMCPAETPEG 481
G R GVSQ+L+ + S ++ S +P R LH +QWG MCP ETPEG
Sbjct: 407 --VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPEG 464
Query: 482 QACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GLVKNLALM I +G + + L E G E
Sbjct: 465 PNSGLVKNLALMAQIAVGINERIVEKTLYEMGVVPVE 501
>gi|237823479|pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823491|pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823507|pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|323462789|pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462805|pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260743|pdb|4AYB|B Chain B, Rnap At 3.2ang
gi|400260760|pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260780|pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814433|gb|ACL36490.1| RNA polymerase subunit 2 [Sulfolobus shibatae B12]
Length = 1131
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 196/517 (37%), Positives = 279/517 (53%), Gaps = 43/517 (8%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
+E W VI AYF+ KGLVRQ LDS+++F +N +QEI+DE +I PG + +
Sbjct: 11 DERWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI-----PTEIPGLKVRLGK 65
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV-----PIM 133
I + KP + ESD + ARLRNLTY+APL++ + + EEV PIM
Sbjct: 66 IRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVENNIEAEPEEVYIGDLPIM 125
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
L+S+ + Q + L E+GE P D GGYFI+NGSE+V++ QE ++ N V V + +
Sbjct: 126 LKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTGSN 185
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
+ A++ S + + R P TI K G+ H + P + +IP +IL RAL
Sbjct: 186 ITHTAKIIS-STAGYRVPVTI-------ERLKDGT----FHVSFPAVPGKIPFVILMRAL 233
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMI 309
G D DI+ + D ++ L PSLE+A I N +IG R A +G RE I
Sbjct: 234 GILTDRDIVYAVSLD---PEIQNELFPSLEQASSIANVDDALDFIGSRVA-IGQKRENRI 289
Query: 310 KYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLA 369
+ A++I+ K LPH+GT KKAYY + I +++ LGRR DD+DHY NKRL LA
Sbjct: 290 EKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLA 349
Query: 370 GPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQG 429
G L LFR F+ D+ ++K G+ + L+ ++ +T ++++LATGNW
Sbjct: 350 GDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRHALATGNW--- 406
Query: 430 NAAGTRAGVSQVLNCLTYASTFTYYL----SWKLAKP----RQLHNSQWGMMCPAETPEG 481
G R GVSQ+L+ + S ++ S +P R LH +QWG MCP ETPEG
Sbjct: 407 --VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPEG 464
Query: 482 QACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
GLVKNLALM I +G + + L E G E
Sbjct: 465 PNSGLVKNLALMAQIAVGINEKIVEKTLYEMGVVPVE 501
>gi|396941959|gb|AFN89696.1| RNA polymerase II, partial [Botryozyma nematodophila]
Length = 776
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 149/255 (58%), Positives = 193/255 (75%), Gaps = 13/255 (5%)
Query: 277 LLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET 332
+L+P +EEAF IQ+++ YIG+RG+ VG+ REK ++YA++I+QKE+LPH+ + ET
Sbjct: 1 MLKPCIEEAFVIQSREVALDYIGRRGSAVGINREKRLRYARDIMQKELLPHITQDEGYET 60
Query: 333 KKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYV 392
+KA++ G+++HR+LLCAL R DDRDH+G KRLDLAGPLL LFR LF+KLT DV Y+
Sbjct: 61 RKAFFLGYMVHRMLLCALERSEVDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYM 120
Query: 393 QKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTF 451
QKCV+ KD NL A+K+ TIT GLKYSLATGNWG Q A +RAGVSQVLN T++ST
Sbjct: 121 QKCVETSKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYTFSSTL 180
Query: 452 TYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAY 503
++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+L+ I++GS +
Sbjct: 181 SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLLSCISVGSPSQ 240
Query: 504 PILEFLEEWGTENFE 518
PI+ FLEEWG E E
Sbjct: 241 PIIFFLEEWGMEPLE 255
>gi|396941935|gb|AFN89684.1| RNA polymerase II, partial [Starmerella bombicola]
Length = 774
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 146/257 (56%), Positives = 196/257 (76%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE FF+Q++Q YIG+RG G++++K I+YA++ILQKE+LPH+ +
Sbjct: 1 VEMLKPCIEEGFFVQDRQVALDYIGRRGNVTGISKDKRIRYARDILQKELLPHITQQEGY 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E++KAY+FG+++HRLLL AL RR +DDRDH+G KRLDLAGPLL LFR LF+KLT D+
Sbjct: 61 ESRKAYFFGYMVHRLLLVALDRREQDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDIFR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+QKC+++ K+ NL A+K+ TIT GLKYSLATGNWG Q A T+AGVSQVLN T++S
Sbjct: 121 YMQKCIESNKEFNLTLAVKSNTITNGLKYSLATGNWGDQKRAMSTKAGVSQVLNRYTFSS 180
Query: 450 TFTYYL--------SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+AKP QLHN+ WG++CPAETPEGQACGLVKNL+LM I++GS
Sbjct: 181 TLSHLRRTNTPIGKDGKIAKPXQLHNTHWGLVCPAETPEGQACGLVKNLSLMTGISVGSP 240
Query: 502 AYPILEFLEEWGTENFE 518
+ PI+ FL+EWG E E
Sbjct: 241 SEPIIFFLQEWGMEPLE 257
>gi|396941920|gb|AFN89677.1| RNA polymerase II, partial [Candida blankii]
Length = 771
Score = 317 bits (812), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 147/257 (57%), Positives = 192/257 (74%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQY----IGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+LRP +EE F +Q+++ IG+RG+ +G+ REK I+YA++ILQKE+LPH+ +
Sbjct: 1 LEMLRPCIEEGFVVQDREVALDMIGRRGSAIGINREKRIRYARDILQKELLPHITQEEGY 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E +KA++ G+++HR+LL AL RR DDRDH+G KRLDLAGPLL LFR LF+KLT D+
Sbjct: 61 ENRKAFFLGYMVHRMLLVALERREPDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDIYR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+QKCV+ KD NL A+K+ TIT GLKYSLATGNWG Q A TRAGVSQVLN T++S
Sbjct: 121 YLQKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSTRAGVSQVLNRYTFSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+A+PRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++GS
Sbjct: 181 TLSHLRRTNTPIGRDGKIARPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSP 240
Query: 502 AYPILEFLEEWGTENFE 518
+ PI+ FLEEWG E E
Sbjct: 241 SQPIVYFLEEWGMEPLE 257
>gi|374633176|ref|ZP_09705543.1| DNA-directed RNA polymerase subunit B [Metallosphaera
yellowstonensis MK1]
gi|373524660|gb|EHP69537.1| DNA-directed RNA polymerase subunit B [Metallosphaera
yellowstonensis MK1]
Length = 1124
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 185/500 (37%), Positives = 274/500 (54%), Gaps = 47/500 (9%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
++ W ++ AYF+ +GLVRQ LDSF++F +N +QEI+DE +I + PG + +
Sbjct: 5 DDRWIIVEAYFKSRGLVRQHLDSFNDFVRNKLQEIIDEQGEI-----TTEIPGLKIKLGK 59
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE-------EVP 131
I + KP + E+D + ARLRNLTYSAP+Y+ + I+ +GE ++P
Sbjct: 60 IRVGKPRVREADKGDREITPMEARLRNLTYSAPIYLTMIP--IENNIEGEPIEVHIGDIP 117
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IML+SS + S + L E+GE P D GGYFIINGSE+V++ QE ++TN V V +
Sbjct: 118 IMLKSSADPTSELSPEKLVEIGEDPKDPGGYFIINGSERVIVTQEDLATNRVLVDVGKSG 177
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFR 251
+ + A++ S P I + L ++ IH + P + IP +IL R
Sbjct: 178 SNITHTAKIISSTAGYRVP---ITIERLKDST---------IHVSFPAMPGRIPFVILMR 225
Query: 252 ALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREK 307
ALG + D D+ + D ++ L PS+E+A I ++ +IG R A +G RE
Sbjct: 226 ALGISTDRDVTYAVSLD---PEIQNELLPSIEQASSIATKEDALDFIGNRVA-IGQKREM 281
Query: 308 MIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLD 367
I+ A++IL K LPH+GT KAYY + +L+ LGRR DD+DHY NKRL
Sbjct: 282 RIQKAEQILDKYFLPHLGTSPSDRMAKAYYLAFAVSKLIELYLGRREPDDKDHYANKRLK 341
Query: 368 LAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG 427
LAG L LFR F+ D+ ++K G+ + L ++ I+ ++++LATGNW
Sbjct: 342 LAGDLFASLFRVAFKAFVKDLVYQLEKSKVRGRRLALNALVRPDIISERIRHALATGNW- 400
Query: 428 QGNAAGTRAGVSQVLNCLTYASTFTYYL----SWKLAKP----RQLHNSQWGMMCPAETP 479
G R GVSQ+L+ + S ++ S +P R LH +QWG MCP ETP
Sbjct: 401 ----VGGRTGVSQLLDRTNWLSMLSHLRRVVSSLARGQPNFEARDLHGTQWGRMCPFETP 456
Query: 480 EGQACGLVKNLALMVYITIG 499
EG GLVKN+AL+ I++G
Sbjct: 457 EGPNSGLVKNIALLAQISVG 476
>gi|396941875|gb|AFN89655.1| RNA polymerase II, partial [Kurtzmaniella cleridarum]
Length = 781
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 150/256 (58%), Positives = 196/256 (76%), Gaps = 14/256 (5%)
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
E+L+P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LPH+ + E
Sbjct: 1 EMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPHITQEEGFE 59
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
T+KAY+ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKLT D+ +Y
Sbjct: 60 TRKAYFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYNY 119
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAST 450
+Q+CV+N K+ NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST
Sbjct: 120 MQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 179
Query: 451 FTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAA 502
++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+++
Sbjct: 180 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTSS 239
Query: 503 YPILEFLEEWGTENFE 518
PIL FLEEWG E E
Sbjct: 240 EPILYFLEEWGMEPLE 255
>gi|6606113|gb|AAF19069.1|AF107797_1 DNA-dependent RNA polymerase II RPB140 [Capronia mansonii]
Length = 1029
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/367 (45%), Positives = 226/367 (61%), Gaps = 22/367 (5%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VF+K P + ++AE+ S+ + R S V + R G
Sbjct: 1 SEKVLIAQERSAGNIVQVFQKAAPAPFTHLAEIRSVIDRGARMMSQCTVKLFRRVDGPEG 60
Query: 228 SS-GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
+ I LPY++ +IP++I+FRAL +D DILE IC+D D +MM++L SL+E
Sbjct: 61 TKIDNPIRVQLPYVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMMDMLMGSLQEGQ 120
Query: 287 FIQN----QQYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ + +I +RG + + K+A +ILQKE LPH+G G +KA++ G+++
Sbjct: 121 PIQGADLARDFIARRGNVPSLKSHERQKHATDILQKEFLPHIGQGPDATARKAFFLGYMV 180
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
+RLL CALGR DDRDH G KRLDLAGPL+ LFR F K T D Y+QK V++G+ +
Sbjct: 181 NRLLKCALGRAEPDDRDHLGKKRLDLAGPLMTNLFRLQFDKATKDFYRYMQKRVESGQPI 240
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------- 454
N+ K IT GLKYSLATGNWG Q +AGVSQVL+ T++ST ++
Sbjct: 241 NIMAGFKHPIITSGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFSSTLSHLRRTNAPI 300
Query: 455 -LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF----- 508
K+AKPRQLHN+ WG +CPAETPEGQACGLVKNL+LM +T P+L +
Sbjct: 301 GREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMSMVTNSYETGPLLNYVMTKH 360
Query: 509 ---LEEW 512
LE+W
Sbjct: 361 VEALEDW 367
>gi|396941801|gb|AFN89618.1| RNA polymerase II, partial [Ogataea minuta]
Length = 785
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 148/256 (57%), Positives = 190/256 (74%), Gaps = 13/256 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ+Q+ YIG+RG +VG+ RE+ I+YAK+ILQ+E LPH+
Sbjct: 1 LEMLKPCIEEGFLIQSQEVALDYIGRRGNSVGIKRERRIQYAKDILQREFLPHISQDSGY 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET KAY+ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKL+ D+
Sbjct: 61 ETNKAYFLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+C++ G D N+ A+K+ TIT GLKYSLATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 121 YMQRCIERGDDFNVVSAVKSNTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM +++GSA
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCVSVGSA 240
Query: 502 AYPILEFLEEWGTENF 517
+ PI LEEWG E
Sbjct: 241 SEPITYLLEEWGLEQL 256
>gi|396941793|gb|AFN89614.1| RNA polymerase II, partial [Cyberlindnera americana]
Length = 763
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 148/254 (58%), Positives = 191/254 (75%), Gaps = 13/254 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EEAF IQ+ + +IG+RG +G+ REK I+YA++ILQKE LPH+
Sbjct: 1 LEMLKPCIEEAFVIQDTEVALDFIGRRGNGLGIRREKRIQYARDILQKEFLPHISQAQGM 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET+KA++ G++++RLLLCAL R+ +DDRDH+G KRLDLAGPLL LFR LFRKL+ D+
Sbjct: 61 ETQKAFFLGYMVNRLLLCALERKPQDDRDHFGKKRLDLAGPLLSNLFRILFRKLSNDIYR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+ V+ G D NL+ A+K TIT GLKYSLATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 121 YMQRSVETGADFNLKIAVKPTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTG 240
Query: 502 AYPILEFLEEWGTE 515
+ PIL FLEEWG E
Sbjct: 241 SDPILWFLEEWGME 254
>gi|396941847|gb|AFN89641.1| RNA polymerase II, partial [Pichia membranifaciens]
Length = 785
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 149/254 (58%), Positives = 192/254 (75%), Gaps = 13/254 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ+Q+ YIG+RG VG+ RE+ I++AK+ILQ+E LPH+
Sbjct: 1 LEMLKPCIEEGFLIQSQEVALDYIGRRGNAVGIKRERRIQFAKDILQREFLPHISQDGGH 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET KAY+ G+II+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LFR LFRKL+ D+
Sbjct: 61 ETNKAYFMGYIINRLLLCALERKEQDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYK 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+C+++G+D N+ A+K+ TIT GLKYSLATGNWG Q A ++AGVSQVLN TY+S
Sbjct: 121 YMQRCIEHGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++GSA
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSA 240
Query: 502 AYPILEFLEEWGTE 515
+ PI LEEWG E
Sbjct: 241 SEPITYLLEEWGLE 254
>gi|6606115|gb|AAF19070.1|AF107798_1 DNA-dependent RNA polymerase II RPB140 [Capronia pilosella]
Length = 937
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 167/367 (45%), Positives = 225/367 (61%), Gaps = 22/367 (5%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VF+K P + ++AE+ S+ + R S V + R G
Sbjct: 1 SEKVLIAQERSAGNIVQVFQKAAPAPFTHLAEIRSVIDRGARMMSQCTVKLFRRVDGPDG 60
Query: 228 SS-GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
+ I LPY++ +IP++I+FRAL +D DILE IC+D D +MM++L SL+E
Sbjct: 61 TKIDNPIRVQLPYVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMMDMLMGSLQEGQ 120
Query: 287 FIQN----QQYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ + +I +RG + + K+A +ILQKE LPH+G G +KA++ G+++
Sbjct: 121 AIQGADLARDFIARRGNVPTLKSHERQKHATDILQKEFLPHIGQGPDATARKAFFLGYMV 180
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
+RLL CALGR DDRDH G KRLDLAGPL+ LFR F K T D Y+QK V++ + +
Sbjct: 181 NRLLKCALGRAEPDDRDHLGKKRLDLAGPLMTNLFRLQFDKATKDFYRYMQKRVESNQPI 240
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------- 454
N+ K IT GLKYSLATGNWG Q +AGVSQVL+ T+AST ++
Sbjct: 241 NIMAGFKHPIITSGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFASTLSHLRRTNAPI 300
Query: 455 -LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF----- 508
K+AKPRQLHN+ WG +CPAETPEGQACGLVKNL+LM +T P+L +
Sbjct: 301 GREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMSMVTNTYETGPLLNYILTKH 360
Query: 509 ---LEEW 512
LE+W
Sbjct: 361 VEALEDW 367
>gi|396941789|gb|AFN89612.1| RNA polymerase II, partial [Barnettozyma populi]
Length = 775
Score = 315 bits (807), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 147/257 (57%), Positives = 194/257 (75%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ+++ YIG+RG +G+ +EK I+YAK+ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEEGFVIQDREVALDYIGRRGNALGIRKEKRIQYAKDILQKEFLPHITQREGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E++KA++ G++++RLLLCAL R+ +DDRDH+G KRLDLAGPL+ LFR LFRKLT D+
Sbjct: 61 ESRKAFFLGYMVNRLLLCALDRKEQDDRDHFGKKRLDLAGPLMTNLFRILFRKLTRDIYR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+ V+ G D NL+ A+KA TIT GLKYSLATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 121 YMQRSVETGVDFNLKLAVKATTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTE 240
Query: 502 AYPILEFLEEWGTENFE 518
+ +LEFL+EWG E E
Sbjct: 241 SQEVLEFLDEWGIEPLE 257
>gi|396941937|gb|AFN89685.1| RNA polymerase II, partial [cf. Ascoidea sp. NRRL Y-6762]
Length = 705
Score = 315 bits (807), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 148/256 (57%), Positives = 193/256 (75%), Gaps = 13/256 (5%)
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
E+L+P +EEAF IQ+++ +IG+RG+ + +EK I+YA++ILQKE+LPH+ + E
Sbjct: 1 EMLKPCVEEAFVIQDREVALDFIGRRGSAQNIRKEKRIQYARDILQKELLPHITQQEGFE 60
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
++KA++ G++IHRLLLCAL R+ +DDRDH+G KRLDLAGPLL LFR LF+KL+ D+ Y
Sbjct: 61 SRKAFFLGYMIHRLLLCALERKEQDDRDHFGKKRLDLAGPLLANLFRILFKKLSKDIFRY 120
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAST 450
+QKCV+ KD NL A+K+ TIT GLKYSLATGNWG Q A +RAGVSQVLN TY+ST
Sbjct: 121 MQKCVETNKDFNLTLAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 180
Query: 451 FTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAA 502
++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++GS +
Sbjct: 181 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSPS 240
Query: 503 YPILEFLEEWGTENFE 518
PI FLEEWG E E
Sbjct: 241 DPISYFLEEWGMEPLE 256
>gi|396941851|gb|AFN89643.1| RNA polymerase II, partial [Dekkera bruxellensis]
Length = 785
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 148/254 (58%), Positives = 190/254 (74%), Gaps = 13/254 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
ME+L+P +EE F IQ+Q+ +IG+RG VG+ R++ I++AK+ILQ+E LPH+
Sbjct: 1 MEMLKPCIEEGFLIQSQEVALDFIGRRGNAVGIKRDRRIQFAKDILQREFLPHISQDSGY 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET KAY+ G+I++RLLLCAL RR DDRDH+G KRLDLAGPLL LFR LFRKL+ D+
Sbjct: 61 ETNKAYFLGYIVNRLLLCALERREPDDRDHFGKKRLDLAGPLLANLFRILFRKLSKDIYR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+C++ G+D N+ A+K+ TIT GLKYSLATGNWG Q A +RAGVSQVLN TYAS
Sbjct: 121 YMQRCIERGEDXNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYAS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G++
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMAGISVGTS 240
Query: 502 AYPILEFLEEWGTE 515
+ PI LEEWG E
Sbjct: 241 SEPISYLLEEWGLE 254
>gi|45545359|gb|AAS67527.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Aureobasidium pullulans]
Length = 937
Score = 315 bits (806), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 165/367 (44%), Positives = 225/367 (61%), Gaps = 22/367 (5%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VF+K P + ++AE+ S+ + R S V + R G
Sbjct: 1 SEKVLIAQERSAGNIVQVFQKAAPAPFTHLAEIRSVIDRGARMMSQCTVKLFRRVDGPDG 60
Query: 228 SS-GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
+ I LPY++ +IP++I+FRAL +D DILE IC+D D +M+++L SL+E
Sbjct: 61 TKIDNPIRVQLPYVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMLDMLMGSLQEGQ 120
Query: 287 FIQN----QQYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ + +I +RG + + K+A +ILQKE LPH+G G +KA++ G+++
Sbjct: 121 PIQGADLARDFIARRGNIPTLKSHERQKHAMDILQKEFLPHIGQGPDVAARKAFFLGYMV 180
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
+RLL CALGR DDRDH G KRLDLAGPL+ LFR F K T D Y+QK V+ G+ +
Sbjct: 181 NRLLKCALGRAEPDDRDHLGKKRLDLAGPLMTNLFRLQFDKATKDFFRYMQKRVEAGQAI 240
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------- 454
N+ K +T GLKYSLATGNWG Q +AGVSQVL+ T+AST ++
Sbjct: 241 NIHAGFKHPIVTSGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFASTLSHLRRTNAPI 300
Query: 455 -LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF----- 508
K+AKPRQLHN+ WG +CPAETPEGQACGLVKNL+LM +T P++ +
Sbjct: 301 GREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMSMVTNSYETLPLMNYVLTKH 360
Query: 509 ---LEEW 512
LE+W
Sbjct: 361 VEALEDW 367
>gi|270304883|gb|ACZ71380.1| RNA polymerase II second largest subunit [Metzgeria leptoneura]
Length = 191
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 150/180 (83%), Positives = 162/180 (90%), Gaps = 4/180 (2%)
Query: 278 LRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETK 333
LRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETK
Sbjct: 1 LRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETK 60
Query: 334 KAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQ 393
KAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+Q
Sbjct: 61 KAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQ 120
Query: 394 KCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
KCVDNGK++NL +A+KAKTIT GL YSLATGNWGQ N AG RAGVSQVLN LTYAST ++
Sbjct: 121 KCVDNGKEINLAYAVKAKTITSGLXYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSH 180
>gi|396941911|gb|AFN89673.1| RNA polymerase II, partial [Pachysolen tannophilus]
Length = 792
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 148/257 (57%), Positives = 193/257 (75%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EEAF IQ+++ +IG+RG +G+ REK I+YAK+ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEEAFVIQDRETALDFIGRRGNALGIRREKRIQYAKDILQKEFLPHITQDEGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET+KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPL+ LFR LFRKLT D+
Sbjct: 61 ETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLMANLFRILFRKLTKDIFR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+QKCV+ +D NL A+++ TIT GLKYSLATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 121 YMQKCVETNRDFNLTLAVRSNTITAGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTP 240
Query: 502 AYPILEFLEEWGTENFE 518
+ IL +LEEWG E E
Sbjct: 241 SDAILLYLEEWGMEPVE 257
>gi|396941791|gb|AFN89613.1| RNA polymerase II, partial [Wickerhamomyces canadensis]
Length = 780
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 148/257 (57%), Positives = 192/257 (74%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ+++ YIG+RG +G+ REK I+YAK+IL KE LPH+ +
Sbjct: 1 LEMLKPCVEEGFVIQDREVALDYIGRRGNALGIRREKRIQYAKDILTKEFLPHITQREGY 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E++KA++ G++++RLLLCAL R+ +DDRDH+G KRLDLAGPLL LFR LF+KLT D+
Sbjct: 61 ESRKAFFLGYMVNRLLLCALERKGQDDRDHFGKKRLDLAGPLLANLFRILFKKLTRDIYR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+ V+ D NL+ A+KA TIT GLKYSLATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 121 YMQRSVETSTDFNLKLAVKATTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTT 240
Query: 502 AYPILEFLEEWGTENFE 518
+ PIL FLEEWG E E
Sbjct: 241 SDPILLFLEEWGMEQLE 257
>gi|396941903|gb|AFN89669.1| RNA polymerase II, partial [Cephaloascus fragrans]
Length = 789
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 149/257 (57%), Positives = 195/257 (75%), Gaps = 14/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LPH+ +
Sbjct: 1 LEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPHITQEEGF 59
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET+KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKLT D+ +
Sbjct: 60 ETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYN 119
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+CV+ KD NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 120 YMQRCVETDKDFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++GS
Sbjct: 180 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGSN 239
Query: 502 AYPILEFLEEWGTENFE 518
+ PI+ FLEEWG E E
Sbjct: 240 SEPIIYFLEEWGMEPLE 256
>gi|396941795|gb|AFN89615.1| RNA polymerase II, partial [Ogataea angusta]
Length = 786
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 147/254 (57%), Positives = 189/254 (74%), Gaps = 13/254 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ+Q+ YIG+RG ++G+ +E+ I+YAK+ILQ+E LPH+
Sbjct: 1 LEMLKPCIEEGFLIQSQEVALDYIGRRGNSIGIKKERRIQYAKDILQREFLPHISQDSGY 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET KAY+ G+I++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKL+ D+
Sbjct: 61 ETNKAYFLGYIVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+C++ G D N+ A+K+ TIT GLKYSLATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 121 YMQRCIERGDDFNIVSAVKSNTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM ++GSA
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMACASVGSA 240
Query: 502 AYPILEFLEEWGTE 515
+ PI LEEWG E
Sbjct: 241 SEPITYLLEEWGLE 254
>gi|396941803|gb|AFN89619.1| RNA polymerase II, partial [Ambrosiozyma monospora]
Length = 785
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 147/254 (57%), Positives = 191/254 (75%), Gaps = 13/254 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ+Q+ YIG+RG VG+ R++ I++AK+ILQ+E LPH+
Sbjct: 1 LEMLKPCIEEGFLIQSQEVALDYIGRRGNAVGIKRDRRIQFAKDILQREFLPHISQDSGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET KAYY G+II+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LFR LFRKL+ D+
Sbjct: 61 ETNKAYYLGYIINRLLLCALERKEQDDRDHFGKKRLDLAGPLLANLFRVLFRKLSRDIYR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+C++ G+D N+ A+K+ TIT GLKYSLATGNWG Q A ++AGVSQVLN TY+S
Sbjct: 121 YMQRCIERGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM +++GS+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCVSVGSS 240
Query: 502 AYPILEFLEEWGTE 515
+ PI LEEWG E
Sbjct: 241 SEPITYLLEEWGLE 254
>gi|396941805|gb|AFN89620.1| RNA polymerase II, partial [Candida boidinii]
Length = 783
Score = 314 bits (804), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 148/257 (57%), Positives = 188/257 (73%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ Q+ +IG+RG +G+ R K I+YAK+ILQ+E LPH+
Sbjct: 1 LEMLKPCIEEGFLIQTQEVALDFIGRRGNAIGIPRNKRIQYAKDILQREFLPHISQDSGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET KAYY G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL GLFR LFRKLT D+
Sbjct: 61 ETNKAYYLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLLAGLFRVLFRKLTRDIYR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+C++ +D N+ A+K+ TIT GLKYSLATGNWG Q A ++AGVSQVLN TYAS
Sbjct: 121 YMQRCIERSEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYAS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++GS
Sbjct: 181 TLSHLRRTNTSIGRDSKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTGISVGSP 240
Query: 502 AYPILEFLEEWGTENFE 518
+ PI LEEWG E +
Sbjct: 241 SEPITYLLEEWGLEPLQ 257
>gi|396941955|gb|AFN89694.1| RNA polymerase II, partial [Dipodascopsis anomala]
Length = 765
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 143/257 (55%), Positives = 193/257 (75%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EEAF IQ+++ +IG+RG +G+ +EK ++YA++I+Q+E+LPH+ +
Sbjct: 1 VEMLKPCIEEAFVIQDREVALDFIGRRGTAMGINKEKRLRYARDIMQRELLPHITQSEGY 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET+KA++ G+++H++L CAL RR DDRDH+G KRLDLAGPLL LFR LFRKLT DV
Sbjct: 61 ETRKAFFLGYMVHKMLQCALERREVDDRDHFGKKRLDLAGPLLANLFRVLFRKLTRDVYK 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+QKCV+ +D NL A+K TIT GL+YSLATGNWG Q A +RAGVSQVLN T++S
Sbjct: 121 YMQKCVETNRDFNLTLAVKPNTITNGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTFSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTP 240
Query: 502 AYPILEFLEEWGTENFE 518
+ PI+ FLEEWG E E
Sbjct: 241 SQPIIFFLEEWGMEPLE 257
>gi|396941897|gb|AFN89666.1| RNA polymerase II, partial [Yamadazyma mexicana]
Length = 783
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 149/257 (57%), Positives = 196/257 (76%), Gaps = 14/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ Q+ +IG+RG +G+ REK I+YA++ILQKE+LP++ +
Sbjct: 1 LEMLKPCVEEGFVIQEQEVALDFIGRRGV-LGIRREKRIQYARDILQKELLPNITQEEGF 59
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
T+KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKLT D+ +
Sbjct: 60 ATRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYN 119
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+CV+N K+ NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++GS+
Sbjct: 180 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSS 239
Query: 502 AYPILEFLEEWGTENFE 518
+ PIL FLEEWG E E
Sbjct: 240 SEPILVFLEEWGLEPLE 256
>gi|330833900|ref|YP_004408628.1| DNA-directed RNA polymerase subunit B [Metallosphaera cuprina Ar-4]
gi|329566039|gb|AEB94144.1| DNA-directed RNA polymerase subunit B [Metallosphaera cuprina Ar-4]
Length = 1124
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 191/502 (38%), Positives = 283/502 (56%), Gaps = 47/502 (9%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T ++ WA++ AYF+ +GLVRQ LDSF++F +N +QEI+DE A+I + PG +
Sbjct: 3 TIDDRWAIVEAYFKSRGLVRQHLDSFNDFIKNKLQEIIDEQAEI-----TTEIPGLKIRL 57
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE-------E 129
+I + KP + E+D + ARLRNLTY+AP+Y+++T I+ +G+ +
Sbjct: 58 GKIRVGKPRVREADKGDKEITPMEARLRNLTYAAPVYLEMTP--IENNIEGDLTEVYIGD 115
Query: 130 VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
+PIML+S + + + L E+GE P D GGYFI+NGSE+V++ QE ++TN V +
Sbjct: 116 IPIMLKSIADPTSEFTSEKLVEIGEDPKDPGGYFIVNGSERVIVTQEDLATNRVLTDVGK 175
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
+ + A++ S + S R P TI L ++ IH + P + +IP IL
Sbjct: 176 TGSNITHTAKIIS-STSGYRVPITI--EKLKDST---------IHVSFPAVPGKIPFAIL 223
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
RALG DE+I + D D Q ELL PS+E+A I ++ +IG R A +G R
Sbjct: 224 MRALGIETDEEITLAVSLD-PDIQN-ELL-PSIEQASSIISKDDALDFIGNRIA-IGQKR 279
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
E I+ A+++L K LPH+GT T KAYY + +L+ LGRR DD+DHY NKR
Sbjct: 280 EMRIQKAEQVLDKYFLPHIGTNASDRTAKAYYLAFAVSKLIELYLGRREPDDKDHYANKR 339
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGN 425
L LAG L LFR F+ D+ ++K G+ + + ++ I+ ++++LATGN
Sbjct: 340 LKLAGDLFASLFRVAFKAFVKDLVFQLEKSKVRGRRLAVNALVRQDIISERIRHALATGN 399
Query: 426 WGQGNAAGTRAGVSQVLNCLTYASTFTYYL----SWKLAKP----RQLHNSQWGMMCPAE 477
W G R GVSQ+L+ + S ++ S +P R LH +QWG MCP E
Sbjct: 400 W-----VGGRTGVSQLLDRTNWLSMLSHLRRVVSSLARGQPNFEARDLHGTQWGRMCPFE 454
Query: 478 TPEGQACGLVKNLALMVYITIG 499
TPEG GLVKNLAL+ I++G
Sbjct: 455 TPEGPNSGLVKNLALLGQISVG 476
>gi|396941873|gb|AFN89654.1| RNA polymerase II, partial [Candida multigemmis]
Length = 779
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 148/257 (57%), Positives = 196/257 (76%), Gaps = 14/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ +
Sbjct: 1 LEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGF 59
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET+KAY+ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKL+ D+ +
Sbjct: 60 ETRKAYFLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLLANLFRILFRKLSKDIYN 119
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+CV+N K+ NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 180 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTP 239
Query: 502 AYPILEFLEEWGTENFE 518
+ PIL FLEEWG E E
Sbjct: 240 SEPILYFLEEWGMEPLE 256
>gi|343129020|gb|AEL88433.1| RNA polymerase II [Metzgeria frontipilis]
Length = 188
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 152/188 (80%), Positives = 162/188 (86%), Gaps = 4/188 (2%)
Query: 269 FQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHV 324
F DT MMELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHV
Sbjct: 1 FNDTSMMELLRPSLEEAFVIQNQQVXLDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHV 60
Query: 325 GTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKL 384
G G+FCETKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKL
Sbjct: 61 GVGEFCETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKL 120
Query: 385 TGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNC 444
T DVR Y+ V N K+ L +A+KAKTIT GLKYSLATGNWGQ N AG RAGVSQVLN
Sbjct: 121 TKDVRGYLXXXVXNXKEXXLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNR 180
Query: 445 LTYASTFT 452
LTYAST +
Sbjct: 181 LTYASTLS 188
>gi|167650530|gb|ABZ90898.1| RNA polymerase II subunit 2 [Agaricus subsubensis]
Length = 368
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 150/235 (63%), Positives = 181/235 (77%), Gaps = 9/235 (3%)
Query: 293 YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGR 352
+IG RG T G++RE+ I+YA+EILQKEMLPHV + E+KKAY+FG++IHRLLL AL R
Sbjct: 7 FIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALER 66
Query: 353 RAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKT 412
R DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ NL A+K +T
Sbjct: 67 RELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQT 126
Query: 413 ITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPR 463
IT GLKYSLATGNWG Q + ++AGVSQVLN TYAST ++ K+AKPR
Sbjct: 127 ITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPR 186
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
QLHN+ WGM+CPAETPEGQACGLVKNLALM I++GS + P++EFLEEWG E+ E
Sbjct: 187 QLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLE 241
>gi|396941797|gb|AFN89616.1| RNA polymerase II, partial [Ogataea methanolica]
Length = 784
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 147/253 (58%), Positives = 189/253 (74%), Gaps = 13/253 (5%)
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
E+L+P +EE F IQ+Q+ YIG+RG VG+ RE+ I++AK+ILQ+E LPH+ E
Sbjct: 1 EMLKPCIEEGFLIQSQEVALDYIGRRGNAVGIRRERRIQFAKDILQREFLPHISQDTGFE 60
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
T KAYY G+II+RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKL+ D+ Y
Sbjct: 61 TNKAYYLGYIINRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYRY 120
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAST 450
+Q+C++ G+D N+ A+K+ TIT GLKYSLATGNWG Q A +RAGVSQVLN TY+ST
Sbjct: 121 MQRCIERGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 180
Query: 451 FTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAA 502
++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM +++G+++
Sbjct: 181 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCVSVGTSS 240
Query: 503 YPILEFLEEWGTE 515
PI LEEWG E
Sbjct: 241 EPITYLLEEWGLE 253
>gi|146302818|ref|YP_001190134.1| DNA-directed RNA polymerase subunit B [Metallosphaera sedula DSM
5348]
gi|145701068|gb|ABP94210.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
polymerase, subunit B' [Metallosphaera sedula DSM 5348]
Length = 1124
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 189/502 (37%), Positives = 276/502 (54%), Gaps = 51/502 (10%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI--EIRPESQHNPGQQSDF 76
++ W ++ AYF+ +GLVRQ LDSF++F +N +QEI+DE +I EI PG +
Sbjct: 5 DDRWVIVEAYFKSRGLVRQHLDSFNDFIKNKLQEIIDEQGEIITEI-------PGLKIRL 57
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE-------E 129
+I + KP + E+D + ARLRNLTY+AP+++ +T ++ +G+ +
Sbjct: 58 GKIRVGKPRVREADKGDKEITPMEARLRNLTYAAPIFLTMTP--VENNIEGDPTEVHIGD 115
Query: 130 VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
+PIML+S + SQ L E+GE P D GGYFIINGSE+V++ QE ++TN V +
Sbjct: 116 IPIMLKSIADPTSEFSQDKLVEIGEDPKDPGGYFIINGSERVIVTQEDLATNRVLTDVGK 175
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
+ + A++ S + S R P TI L ++ IH + P IP IL
Sbjct: 176 AGSNVTHTAKIIS-STSGYRVPITI--ERLKDST---------IHVSFPSAPGRIPFAIL 223
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
RALG DEDI + D Q+ L PSLE+A I +++ +IG R A +G R
Sbjct: 224 MRALGVETDEDITLAVSLD---PQIQNELLPSLEQASSISSKEDALDFIGNRVA-IGQKR 279
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
E I+ A++IL K LPH+GT KAYY + +L+ LGRR DD+DHY NKR
Sbjct: 280 EMRIQKAEQILDKYFLPHIGTNPSDRVAKAYYLAFAVSKLIELYLGRREPDDKDHYANKR 339
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGN 425
L LAG L LFR F+ D+ ++K G+ + + ++ I+ ++++LATGN
Sbjct: 340 LKLAGDLFASLFRVAFKAFVKDLVFQLEKSKVRGRRLAINALVRPDIISERIRHALATGN 399
Query: 426 WGQGNAAGTRAGVSQVLNCLTYASTFTYYL----SWKLAKP----RQLHNSQWGMMCPAE 477
W G R GVSQ+L+ + S ++ S +P R LH +QWG MCP E
Sbjct: 400 W-----VGGRTGVSQLLDRTNWLSMLSHLRRVVSSLARGQPNFEARDLHGTQWGRMCPFE 454
Query: 478 TPEGQACGLVKNLALMVYITIG 499
TPEG GLVKN+AL+ I++G
Sbjct: 455 TPEGPNSGLVKNIALLAQISVG 476
>gi|343129056|gb|AEL88451.1| RNA polymerase II [Metzgeria pubescens]
Length = 179
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/179 (83%), Positives = 159/179 (88%), Gaps = 4/179 (2%)
Query: 269 FQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHV 324
F DT MMELLRPSLEEAF IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHV
Sbjct: 1 FNDTSMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHV 60
Query: 325 GTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKL 384
G G+FCETKKAY+FG+IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKL
Sbjct: 61 GVGEFCETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKL 120
Query: 385 TGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLN 443
DV Y+QKCVDNGK++NL +A+KAKTI GLKYSLATGNWGQ N AG RAGVSQVLN
Sbjct: 121 XKDVXGYLQKCVDNGKEINLAYAVKAKTIXSGLKYSLATGNWGQANTAGVRAGVSQVLN 179
>gi|167650532|gb|ABZ90899.1| RNA polymerase II subunit 2 [Agaricus subsubensis]
Length = 410
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 150/235 (63%), Positives = 181/235 (77%), Gaps = 9/235 (3%)
Query: 293 YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGR 352
+IG RG T G++RE+ I+YA+EILQKEMLPHV + E+KKAY+FG++IHRLLL AL R
Sbjct: 7 FIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALER 66
Query: 353 RAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKT 412
R DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ NL A+K +T
Sbjct: 67 RELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQT 126
Query: 413 ITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPR 463
IT GLKYSLATGNWG Q + ++AGVSQVLN TYAST ++ K+AKPR
Sbjct: 127 ITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPR 186
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
QLHN+ WGM+CPAETPEGQACGLVKNLALM I++GS + P++EFLEEWG E+ E
Sbjct: 187 QLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLE 241
>gi|396941787|gb|AFN89611.1| RNA polymerase II, partial [Starmera amethionina]
Length = 770
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/257 (57%), Positives = 193/257 (75%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EEAF IQ+++ YIG+RG +GV +EK I+YAK+ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEEAFVIQDREVALDYIGRRGNALGVKKEKRIQYAKDILQKEFLPHITQKEGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E++KA++ G++++RLLLCAL R+ +DDRDH+G KRLDLAGPLL LFR LF+KLT D+
Sbjct: 61 ESRKAFFLGYMVNRLLLCALERKPQDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIFR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+ V+ D NL+ A+KA TIT GLKYSLATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 121 YMQRSVETDTDFNLKLAVKASTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSGISVGTL 240
Query: 502 AYPILEFLEEWGTENFE 518
+ PI FLEEWG E E
Sbjct: 241 SDPIYYFLEEWGLEPLE 257
>gi|396941895|gb|AFN89665.1| RNA polymerase II, partial [Yamadazyma philogaea]
Length = 782
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/256 (58%), Positives = 195/256 (76%), Gaps = 14/256 (5%)
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
E+L+P +EE F IQ Q+ +IG+RG +G+ REK I+YAK+ILQKE+LP++ +
Sbjct: 1 EMLKPCVEEGFVIQEQEVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFA 59
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
T+KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKLT D+ +Y
Sbjct: 60 TRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTRDIYNY 119
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAST 450
+Q+CV+N K+ NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST
Sbjct: 120 MQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 179
Query: 451 FTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAA 502
++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+++
Sbjct: 180 LSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTSS 239
Query: 503 YPILEFLEEWGTENFE 518
PIL FLEEWG E E
Sbjct: 240 EPILVFLEEWGLEPLE 255
>gi|154342160|ref|XP_001567028.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134064357|emb|CAM42447.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 1185
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 189/549 (34%), Positives = 294/549 (53%), Gaps = 55/549 (10%)
Query: 5 EERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRP 64
+ER +E+ ++ E+ W VIS++F EKGLV QQLDS+++F + I ES + R
Sbjct: 22 DERDDENPNDDLDSEDIWEVISSFFREKGLVHQQLDSYNDFLMRIPKMI--ESMAVIPRQ 79
Query: 65 ESQHNPG----QQSDFAEIYLSKPMMTESDGETAT---------LFLKAARLRNLTYSAP 111
+ Q++PG +Q D + L ++ +T + LF RLR++TY A
Sbjct: 80 DDQYDPGVTMEEQRDQPRLVLQDVVIGNPSHQTHSYFAGGPLPPLFPNECRLRDMTYDAQ 139
Query: 112 LYV-----------DVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEG 160
V D + + +PIML+S C L + L L ECP+D+G
Sbjct: 140 AQVTLGVELYHPHADTPHDTFLRNVELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQG 199
Query: 161 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLS 220
GYF+ING+EKVLIAQE+ + NHVY F +++ + EV S+ E P T+ + M
Sbjct: 200 GYFVINGTEKVLIAQERQAANHVYTFSRQK----GLLCEVKSIVEGSLNKPRTLQIIMPY 255
Query: 221 RTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRP 280
R GS + + + + IP+ +LFRA+ AD++IL+ + D +DT M+ELLR
Sbjct: 256 RNRGP-GSGFESLMCRVAQMDETIPLFVLFRAMDMVADKEILQTVVPDLKDTAMLELLRG 314
Query: 281 SLEEAFFIQ------NQQYIGKR----GATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
S+ +A +Q YIG+R A + RE A+ +L +++LPH+GT
Sbjct: 315 SMSDASTLQIFTREEALGYIGRRLGKQDAMANLQRE-----AESLLMRDLLPHMGTDPSA 369
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
K Y G+++H+LLL ALGR E DRD G+KR+D+AG LL +T ++ ++
Sbjct: 370 NRTKCLYMGYMVHKLLLVALGRHEETDRDFLGHKRIDVAGTLLTVQLQTFLAQVRKEMIK 429
Query: 391 YVQKCVDNGKDV-NLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYAS 449
+Q N + V + I ++ +T GL+ LATGN+G + GV+Q LN LTY+S
Sbjct: 430 TLQDHAANPRGVFSFGRVIHSRLVTDGLRRCLATGNFGDLKTGNIKTGVAQTLNRLTYSS 489
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
+ + S K +PR LH +QWG +CP ETPEG + GL+KN+ALM ++ G+
Sbjct: 490 SLSNLRRIQNPIAASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNVALMCLMSRGTD 549
Query: 502 AYPILEFLE 510
+++ ++
Sbjct: 550 HAEVVQAVQ 558
>gi|396941951|gb|AFN89692.1| RNA polymerase II, partial [Dipodascopsis uninucleata]
Length = 772
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 142/256 (55%), Positives = 192/256 (75%), Gaps = 13/256 (5%)
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
E+L+P +EEAF IQ+++ +IG+RG +G+ +EK ++YA++I+Q+E+LPH+ + E
Sbjct: 1 EMLKPCIEEAFVIQDREVALDFIGRRGTAMGINKEKRLRYARDIMQRELLPHITQSEGYE 60
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
T+KA++ G+++H++L CAL RR DDRDH+G KRLDLAGPLL LFR LF+KLT DV Y
Sbjct: 61 TRKAFFLGYMVHKMLQCALERRELDDRDHFGKKRLDLAGPLLANLFRILFKKLTRDVYKY 120
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAST 450
+QKCV+ +D NL A+K TIT GL+YSLATGNWG Q A +RAGVSQVLN T++ST
Sbjct: 121 MQKCVETNRDFNLTLAVKPNTITNGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTFSST 180
Query: 451 FTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAA 502
++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ +
Sbjct: 181 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTSISVGTPS 240
Query: 503 YPILEFLEEWGTENFE 518
PI+ FLEEWG E E
Sbjct: 241 QPIIFFLEEWGMEPLE 256
>gi|396941887|gb|AFN89661.1| RNA polymerase II, partial [Scheffersomyces stipitis]
Length = 783
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 147/257 (57%), Positives = 196/257 (76%), Gaps = 14/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ +
Sbjct: 1 LEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGF 59
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E++KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKLT D+ +
Sbjct: 60 ESRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYN 119
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+CV+N K+ NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 180 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTP 239
Query: 502 AYPILEFLEEWGTENFE 518
+ PIL FLEEWG E E
Sbjct: 240 SEPILYFLEEWGMEPLE 256
>gi|396941809|gb|AFN89622.1| RNA polymerase II, partial [Saccharomycopsis capsularis]
Length = 773
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 144/257 (56%), Positives = 194/257 (75%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+PS+EEAF IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LPH+ +
Sbjct: 1 LEMLKPSIEEAFVIQEREVALDFIGRRGNVIGIRREKRIQYAKDILQKELLPHITRDEGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E++KA++ G+++++LL+CAL R+ DDRDH+G KRLDLAGPLL LFR LFRKL+ D+
Sbjct: 61 ESRKAFFLGYMVNKLLMCALERKEPDDRDHFGKKRLDLAGPLLAKLFRLLFRKLSRDIFR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+CV+ +D NL AI+ TIT GL+YSLATGNWG Q A +AGVSQVLN TY+S
Sbjct: 121 YMQRCVETNRDFNLSLAIRPSTITDGLRYSLATGNWGEQKKAMSAKAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+AKPRQLHNS WG++CPAETPEGQACGLVKNL+LM I++GS+
Sbjct: 181 TLSHLRRTNTPIGRDGKIAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMTCISVGSS 240
Query: 502 AYPILEFLEEWGTENFE 518
+ I+E+LEEWG + E
Sbjct: 241 SDAIVEYLEEWGMDPLE 257
>gi|396941881|gb|AFN89658.1| RNA polymerase II, partial [Debaryomyces hansenii]
Length = 781
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 147/257 (57%), Positives = 197/257 (76%), Gaps = 14/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ +
Sbjct: 1 LEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGF 59
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET+KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +
Sbjct: 60 ETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYN 119
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+CV+N K+ NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G++
Sbjct: 180 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTS 239
Query: 502 AYPILEFLEEWGTENFE 518
+ PIL FLEEWG E E
Sbjct: 240 SEPILYFLEEWGMEPLE 256
>gi|389594282|ref|XP_001685000.2| putative DNA-directed RNA polymerase II subunit 2 [Leishmania major
strain Friedlin]
gi|321399803|emb|CAJ08180.2| putative DNA-directed RNA polymerase II subunit 2 [Leishmania major
strain Friedlin]
Length = 1185
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 190/549 (34%), Positives = 293/549 (53%), Gaps = 55/549 (10%)
Query: 5 EERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRP 64
+E +E+ ++ E+ W VIS++F EKGLV QQLDS+++F + I ES + R
Sbjct: 22 DEHDDENPNDDLDSEDIWEVISSFFREKGLVHQQLDSYNDFLMRIPKMI--ESMAVIPRQ 79
Query: 65 ESQHNPG----QQSDFAEIYLSKPMMTESDGETAT---------LFLKAARLRNLTYSAP 111
+ Q++PG +Q D + L ++ +T + LF RLR++TY A
Sbjct: 80 DDQYDPGVTMEEQRDQPRLVLQDVVIGNPSHQTHSYFTGGPLPPLFPNECRLRDMTYDAQ 139
Query: 112 LYV-----------DVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEG 160
V D + + +PIML+S C L + L L ECP+D+G
Sbjct: 140 AQVTLGVELYHPHADTPHDTFLRNVELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQG 199
Query: 161 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLS 220
GYF+ING+EKVLIAQE+ + NHVY F +++ + EV S+ E P T+ + M
Sbjct: 200 GYFVINGTEKVLIAQERQAANHVYTFSRQK----GLLCEVKSIVEGSLNKPRTLQIIMQY 255
Query: 221 RTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRP 280
R GS + + + + IP+ +LFRA+ AD++IL+ + D +DT M+ELLR
Sbjct: 256 RNKGP-GSGFENLMCRVAQMDETIPLFVLFRAMDMVADKEILQTVVPDLKDTAMLELLRG 314
Query: 281 SLEEAFFIQ------NQQYIGKR----GATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
S+ +A +Q YIG+R A + RE A+ +L +++LPH+GT
Sbjct: 315 SMSDASTLQIFTREEALGYIGRRLGKQDAMANLQRE-----AESLLMRDLLPHMGTDPSA 369
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
K Y G+++H+LLL ALGR E DRD G+KR+D+AG LL +T ++ ++
Sbjct: 370 NRTKCLYMGYMVHKLLLVALGRHEETDRDFLGHKRIDVAGTLLTVQLQTFLAQVRKEMIK 429
Query: 391 YVQKCVDNGKDV-NLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYAS 449
+Q N + V + I +K IT GL+ LATGN+G + GV+Q LN LTY+S
Sbjct: 430 TLQDHAANPRGVFSFGRVIHSKLITDGLRRCLATGNFGDLKTGNIKTGVAQTLNRLTYSS 489
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
+ + S K +PR LH +QWG +CP ETPEG + GL+KN+ALM ++ G+
Sbjct: 490 SLSNLRRIQNPIAASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNVALMCLMSRGTD 549
Query: 502 AYPILEFLE 510
+++ ++
Sbjct: 550 HAEVVQAVQ 558
>gi|413948531|gb|AFW81180.1| hypothetical protein ZEAMMB73_308587 [Zea mays]
Length = 617
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 156/203 (76%), Positives = 164/203 (80%), Gaps = 22/203 (10%)
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
GSSGQY+ ATLPYIR IPIII+FRALGF AD+ ILEHICYDF DTQMMELLRPSLEEAF
Sbjct: 433 GSSGQYVCATLPYIRANIPIIIVFRALGFVADKGILEHICYDFSDTQMMELLRPSLEEAF 492
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQNQQ YI K GATVGVTREK IKYAKEILQKEML G+ CETKKAYYFG+II
Sbjct: 493 VIQNQQVALDYIRKHGATVGVTREKRIKYAKEILQKEMLR---VGELCETKKAYYFGYII 549
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLL+CAL RRAEDDRDHYGNKRLDLAGPLLGGLFR CVDNGK+V
Sbjct: 550 HRLLMCALSRRAEDDRDHYGNKRLDLAGPLLGGLFRM---------------CVDNGKEV 594
Query: 403 NLQFAIKAKTITGGLKYSLATGN 425
N QFAIKAKT+T GLKYSLATGN
Sbjct: 595 NFQFAIKAKTVTSGLKYSLATGN 617
>gi|396941871|gb|AFN89653.1| RNA polymerase II, partial [Spathaspora passalidarum]
Length = 779
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 147/256 (57%), Positives = 196/256 (76%), Gaps = 14/256 (5%)
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
E+L+P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ + E
Sbjct: 1 EMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFE 59
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
T+KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +Y
Sbjct: 60 TRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNY 119
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAST 450
+Q+CV+N K+ NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST
Sbjct: 120 MQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 179
Query: 451 FTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAA 502
++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ +
Sbjct: 180 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPS 239
Query: 503 YPILEFLEEWGTENFE 518
PIL FLEEWG E+ E
Sbjct: 240 EPILYFLEEWGMESLE 255
>gi|396941953|gb|AFN89693.1| RNA polymerase II, partial [Lipomyces starkeyi]
Length = 773
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 141/257 (54%), Positives = 194/257 (75%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EEAF IQ+++ +IG+RG +G+ +EK ++YA++I+Q+E+LPH+ +
Sbjct: 1 LEMLKPCIEEAFVIQDREVALDFIGRRGTAMGINKEKRLRYARDIMQRELLPHITQSEGY 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET+KA++ G+++H++L CAL RR DDRDH+G KRLDLAGPLL LFR LF+KLT D+
Sbjct: 61 ETRKAFFLGYMVHKMLQCALERREVDDRDHFGKKRLDLAGPLLANLFRILFKKLTRDMYK 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+QKCV+ +D NL A+K TIT GL+YSLATGNWG Q A +RAGVSQVLN T++S
Sbjct: 121 YMQKCVETNRDFNLTLAVKPNTITNGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTFSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G++
Sbjct: 181 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTS 240
Query: 502 AYPILEFLEEWGTENFE 518
+ PI+ FLEEWG E E
Sbjct: 241 SQPIIYFLEEWGMEPLE 257
>gi|396941885|gb|AFN89660.1| RNA polymerase II, partial [Schwanniomyces etchellsii]
Length = 782
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 147/257 (57%), Positives = 196/257 (76%), Gaps = 14/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ +
Sbjct: 1 LEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGF 59
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET+KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKLT D+ +
Sbjct: 60 ETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYN 119
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+CV+N K+ NL A+K++T+T GL+YSLATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTVTDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 180 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTP 239
Query: 502 AYPILEFLEEWGTENFE 518
+ PIL FLEEWG E E
Sbjct: 240 SEPILYFLEEWGMEPLE 256
>gi|15897173|ref|NP_341778.1| DNA-directed RNA polymerase subunit beta'' [Sulfolobus solfataricus
P2]
gi|13813362|gb|AAK40568.1| DNA-directed RNA polymerase, subunit B'' (rpoB2) [Sulfolobus
solfataricus P2]
Length = 480
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 189/493 (38%), Positives = 270/493 (54%), Gaps = 43/493 (8%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T +E W VI AYF+ KGLVRQ LDS+++F +N +QEI+DE +I PG +
Sbjct: 6 TIDERWRVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI-----PTEIPGLKVRL 60
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV-----P 131
+I + KP + ESD + ARLRNLTY+APL++ + + EEV P
Sbjct: 61 GKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVENNIEAEPEEVYIGDLP 120
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IML+S+ + Q + L E+GE P D GGYFI+NGSE+V++ QE ++ N V V +
Sbjct: 121 IMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTG 180
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFR 251
+ + A++ S + + R P TI K G+ H + P + +IP +IL R
Sbjct: 181 SNITHTAKIIS-STAGYRVPVTI-------ERLKDGT----FHVSFPAVPGKIPFVILMR 228
Query: 252 ALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREK 307
ALG D DI+ + D ++ L PSLE+A I N +IG R A +G RE
Sbjct: 229 ALGILTDRDIVYAVSLD---PEVQNELFPSLEQASSIANVDDALDFIGSRVA-IGQKREN 284
Query: 308 MIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLD 367
I+ A++I+ K LPH+GT KKAYY + I +++ LGRR DD+DHY NKRL
Sbjct: 285 RIEKAQQIIDKYFLPHLGTSAEDRKKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLR 344
Query: 368 LAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG 427
LAG L LFR F+ D+ ++K G+ + L+ ++ +T ++++LATGNW
Sbjct: 345 LAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRHALATGNW- 403
Query: 428 QGNAAGTRAGVSQVLNCLTYASTFTYYL----SWKLAKP----RQLHNSQWGMMCPAETP 479
G R GVSQ+L+ + S ++ S +P R LH +QWG MCP ETP
Sbjct: 404 ----VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETP 459
Query: 480 EGQACGLVKNLAL 492
EG GLVKNLA+
Sbjct: 460 EGPNSGLVKNLAV 472
>gi|396941837|gb|AFN89636.1| RNA polymerase II, partial [Eremothecium cymbalariae]
Length = 776
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 146/257 (56%), Positives = 193/257 (75%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEEGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E++KA++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLFRKLT D+
Sbjct: 61 ESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
++Q+ V+ KD NL+ A+KA TIT GLKY+LATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 121 FMQRSVEEAKDFNLKLAVKATTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240
Query: 502 AYPILEFLEEWGTENFE 518
PI+ FL EWG E E
Sbjct: 241 PVPIITFLNEWGMEPLE 257
>gi|396941829|gb|AFN89632.1| RNA polymerase II, partial [Kazachstania viticola]
Length = 771
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 146/257 (56%), Positives = 193/257 (75%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +E+ F IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E++KA++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLLG LF+TLFRKLT D+
Sbjct: 61 ESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+ V+ D N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 121 YMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240
Query: 502 AYPILEFLEEWGTENFE 518
PI+ FL EWG E E
Sbjct: 241 PMPIITFLSEWGMEPLE 257
>gi|396941901|gb|AFN89668.1| RNA polymerase II, partial [Yamadazyma triangularis]
Length = 783
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 148/257 (57%), Positives = 195/257 (75%), Gaps = 14/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ Q+ +IG+RG +G+ REK I+YAK+ILQKE+LP++ +
Sbjct: 1 LEMLKPCVEEGFVIQEQEVALDFIGRRGV-LGIKREKRIQYAKDILQKELLPNITQDEGF 59
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
T+KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +
Sbjct: 60 ATRKAFFLGYMVNRLLLCALERKEPDDRDHFGRKRLDLAGPLLANLFRILFKKLTRDIYN 119
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+CV+N K+ NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 180 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTP 239
Query: 502 AYPILEFLEEWGTENFE 518
+ PIL FLEEWG E E
Sbjct: 240 SEPILLFLEEWGMEPLE 256
>gi|396941855|gb|AFN89645.1| RNA polymerase II, partial [Aciculoconidium aculeatum]
Length = 763
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 147/255 (57%), Positives = 194/255 (76%), Gaps = 14/255 (5%)
Query: 277 LLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET 332
+L+P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ + ET
Sbjct: 1 MLKPCVEEGFVIQEREVALDFIGRRGV-MGIRREKRIQYAKDILQKELLPNITQEEGFET 59
Query: 333 KKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYV 392
+KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKLT D+ +Y+
Sbjct: 60 RKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYNYM 119
Query: 393 QKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTF 451
Q+CV+N K+ NL A+K++T+T GL+YSLATGNWG Q A RAGVSQVLN TY+ST
Sbjct: 120 QRCVENDKEFNLTLAVKSQTVTDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSSTL 179
Query: 452 TYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAY 503
++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+A+
Sbjct: 180 SHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTASE 239
Query: 504 PILEFLEEWGTENFE 518
PIL FLEEWG E E
Sbjct: 240 PILYFLEEWGMEPLE 254
>gi|396941883|gb|AFN89659.1| RNA polymerase II, partial [Schwanniomyces occidentalis]
Length = 776
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 147/257 (57%), Positives = 195/257 (75%), Gaps = 14/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ +
Sbjct: 1 LEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGF 59
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET+KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKLT D+ +
Sbjct: 60 ETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYN 119
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+CV+N K+ NL A+K++T T GL+YSLATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTXTDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 180 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTP 239
Query: 502 AYPILEFLEEWGTENFE 518
+ PIL FLEEWG E E
Sbjct: 240 SEPILYFLEEWGMEPLE 256
>gi|396941893|gb|AFN89664.1| RNA polymerase II, partial [Meyerozyma guilliermondii]
Length = 786
Score = 311 bits (796), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 148/256 (57%), Positives = 195/256 (76%), Gaps = 14/256 (5%)
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
E+L+P +EE F IQ ++ +IG+RGA +G+ REK I+YAK+ILQKE+LP++ + E
Sbjct: 1 EMLKPCVEEGFVIQEREVALDFIGRRGA-LGIKREKRIQYAKDILQKELLPNITQDEGFE 59
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
T+KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +Y
Sbjct: 60 TRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNY 119
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAST 450
+Q+CV+N K NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST
Sbjct: 120 MQRCVENDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 179
Query: 451 FTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAA 502
++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ +
Sbjct: 180 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPS 239
Query: 503 YPILEFLEEWGTENFE 518
PIL FLEEWG E E
Sbjct: 240 EPILYFLEEWGMEPLE 255
>gi|396941849|gb|AFN89642.1| RNA polymerase II, partial [Kregervanrija fluxuum]
Length = 785
Score = 311 bits (796), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 145/254 (57%), Positives = 190/254 (74%), Gaps = 13/254 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ+Q+ +IG+RG VG+ RE+ I++AK+ILQ+E LPH+
Sbjct: 1 LEMLKPCIEEGFLIQSQEVALDFIGRRGNAVGIKRERRIQFAKDILQREFLPHISQDSGH 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET KAY+ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LFR LFRKL+ D+
Sbjct: 61 ETNKAYFLGYVINRLLLCALERKEQDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+C++ G+D N+ A+K+ TIT GLKYSLATGNWG Q A ++AGVSQVLN TY+S
Sbjct: 121 YMQRCIERGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTQ 240
Query: 502 AYPILEFLEEWGTE 515
+ PI LEEWG E
Sbjct: 241 SEPITYLLEEWGLE 254
>gi|6606111|gb|AAF19068.1|AF107796_1 DNA-dependent RNA polymerase II RPB140 [Exophiala jeanselmei]
Length = 937
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 166/367 (45%), Positives = 226/367 (61%), Gaps = 22/367 (5%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VF+K P + ++AE+ S+ + R S V + R G
Sbjct: 1 SEKVLIAQERSAGNIVQVFQKAAPAPFTHLAEIRSVIDRGARMMSQCTVKLFRRVDGPDG 60
Query: 228 SS-GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
+ I LPY++ +IP++I+FRAL +D DILE IC+D D +M+++L SL+E
Sbjct: 61 TKIDNPIRVQLPYVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMLDMLMGSLQEGQ 120
Query: 287 FIQN----QQYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ+ + +I +RG + + K+A +ILQKE LPH+G G TKKA++ G+++
Sbjct: 121 PIQSADLARDFIARRGNIPTLKSHERQKHAIDILQKEFLPHIGQGPDVATKKAFFLGYMV 180
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
+RLL ALGR DDRDH G KRLDLAGPL+ LFR F K T D Y+QK V+ G+ +
Sbjct: 181 NRLLKAALGRAEPDDRDHLGKKRLDLAGPLMTNLFRLQFDKATKDFFRYMQKRVEAGQPI 240
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------- 454
++ K IT GLKYSLATGNWG Q +AGVSQVL+ T+AST ++
Sbjct: 241 SIHAGFKHPIITSGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFASTLSHLRRTNAPI 300
Query: 455 -LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI-------- 505
K+AKPRQLHN+ WG +CPAETPEGQACGLVKNL+LM +T P+
Sbjct: 301 GREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMSMVTNSYETEPLRAYVLNKH 360
Query: 506 LEFLEEW 512
++ +EEW
Sbjct: 361 VDAIEEW 367
>gi|401426102|ref|XP_003877535.1| DNA-directed RNA polymerase II subunit 2,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322493781|emb|CBZ29070.1| DNA-directed RNA polymerase II subunit 2,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 1185
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 189/544 (34%), Positives = 290/544 (53%), Gaps = 55/544 (10%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
ED ++ E+ W VIS++F EKGLV QQLDS+++F + I ES + R + Q++
Sbjct: 27 EDPNDDLDSEDIWEVISSFFREKGLVHQQLDSYNDFLMRIPKMI--ESMAVIPRQDDQYD 84
Query: 70 PG----QQSDFAEIYLSKPMMTESDGETAT---------LFLKAARLRNLTYSAPLYV-- 114
PG +Q D + L ++ +T + LF RLR++TY A V
Sbjct: 85 PGVTMEEQRDQPRLVLQDVVIGNPSHQTQSYFAGGSLPPLFPNECRLRDMTYDAQAQVTL 144
Query: 115 ---------DVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFII 165
D + + +PIML+S C L + L L ECP+D+GGYF+I
Sbjct: 145 GVELYHPHADTPHDTFLRNVELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQGGYFVI 204
Query: 166 NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAK 225
NG+EKVLIAQE+ + NHVY F +++ + EV S+ E P T+ + M +
Sbjct: 205 NGTEKVLIAQERQAANHVYTFSRQK----GLLCEVKSIVEGSLNKPRTLQIIMQYKNKGP 260
Query: 226 GGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA 285
GS + + + + IP+ +LFRA+ AD++IL+ + D +DT M+ELLR S+ +A
Sbjct: 261 -GSGFENLMCRVAQMDETIPLFVLFRAMDMVADKEILQTVVPDLKDTAMLELLRGSMSDA 319
Query: 286 FFIQ------NQQYIGKR----GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKA 335
+Q YIG+R A + RE A+ +L +++LPH+GT K
Sbjct: 320 STLQIFTREEALGYIGRRLGKQDAMANLQRE-----AESLLMRDLLPHMGTDPSANRTKC 374
Query: 336 YYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKC 395
Y G+++H+LLL ALGR E DRD G+KR+D+AG LL +T ++ ++ +Q
Sbjct: 375 LYMGYMVHKLLLVALGRHEETDRDFLGHKRIDVAGTLLTVQLQTFLAQVRKEMIKTLQDH 434
Query: 396 VDNGKDV-NLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFT-- 452
N + V + I +K IT GL+ LATGN+G + GV+Q LN LTY+S+ +
Sbjct: 435 AANPRGVFSFGRVIHSKLITDGLRRCLATGNFGDLKTGNIKTGVAQTLNRLTYSSSLSNL 494
Query: 453 ------YYLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPIL 506
S K +PR LH +QWG +CP ETPEG + GL+KN+ALM ++ G+ ++
Sbjct: 495 RRIQNPIAASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNVALMCLMSRGTDHAEVV 554
Query: 507 EFLE 510
+ ++
Sbjct: 555 QAVQ 558
>gi|396941833|gb|AFN89634.1| RNA polymerase II, partial [Lachancea thermotolerans]
Length = 773
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 146/256 (57%), Positives = 192/256 (75%), Gaps = 13/256 (5%)
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
E+L+P +EE F IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ + E
Sbjct: 1 EMLKPCVEEGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFE 60
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
++KA++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLFRKLT D+ +
Sbjct: 61 SRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRF 120
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAST 450
+Q+ V+ KD NL+ A+KA TIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST
Sbjct: 121 MQRSVEEAKDFNLKLAVKATTITAGLKYALATGNWGEQKKAMTSRAGVSQVLNRYTYSST 180
Query: 451 FTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAA 502
++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 LSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDP 240
Query: 503 YPILEFLEEWGTENFE 518
PI+ FL EWG E E
Sbjct: 241 LPIITFLNEWGMEPLE 256
>gi|396941879|gb|AFN89657.1| RNA polymerase II, partial [Priceomyces castillae]
Length = 777
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 149/257 (57%), Positives = 194/257 (75%), Gaps = 14/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+PS+EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ +
Sbjct: 1 LEMLKPSVEEGFVIQEREIALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGF 59
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET+KAY+ G++++RLLL AL R+ DDRDH+G KRLDLAGPLL LFR LFRKLT D+ +
Sbjct: 60 ETRKAYFLGYMVNRLLLAALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYN 119
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+CV+N K+ NL A+K++TIT GL+YSLATGNWG Q A RAGVSQVLN TY+S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSS 179
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+AKPRQLHN+ WG +CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 180 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGSVCPAETPEGQACGLVKNLSLMSCISVGTP 239
Query: 502 AYPILEFLEEWGTENFE 518
+ PIL FLEEWG E E
Sbjct: 240 SEPILYFLEEWGMEPLE 256
>gi|396941825|gb|AFN89630.1| RNA polymerase II, partial [Torulaspora delbrueckii]
Length = 773
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 145/257 (56%), Positives = 193/257 (75%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +E+ F IQ+++ +IG+RG +G+ +EK I+YA++ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E++KA++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLFRKLT D+
Sbjct: 61 ESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+ V+ KD N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 121 YMQRTVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240
Query: 502 AYPILEFLEEWGTENFE 518
PI+ FL EWG E E
Sbjct: 241 PMPIITFLSEWGMEPLE 257
>gi|396941941|gb|AFN89687.1| RNA polymerase II, partial [Phaffomyces opuntiae]
Length = 771
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 147/257 (57%), Positives = 192/257 (74%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE IQ+++ YIG+RG +G+ +EK I+YAK+ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEEGXVIQDREVALDYIGRRGNALGIRKEKRIQYAKDILQKEFLPHITQREGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E++KA++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LFR LF+KLT D+
Sbjct: 61 ESRKAFFLGYMINRLLLCALERKGQDDRDHFGKKRLDLAGPLLANLFRVLFKKLTRDIYR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
++Q+ V+ G D NL+ A+KA TIT GL YSLATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 121 FMQRSVETGVDFNLKLAVKATTITSGLXYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTG 240
Query: 502 AYPILEFLEEWGTENFE 518
+ PIL FLEEWG E E
Sbjct: 241 SDPILYFLEEWGMEPLE 257
>gi|396941831|gb|AFN89633.1| RNA polymerase II, partial [Vanderwaltozyma polyspora]
Length = 775
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 145/257 (56%), Positives = 193/257 (75%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +E+ F IQ+++ +IG+RG +G+ +EK I+YA++ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E++KA++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLLG LF+TLFRKLT D+
Sbjct: 61 ESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+ V+ D N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 121 YMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240
Query: 502 AYPILEFLEEWGTENFE 518
PI+ FL EWG E E
Sbjct: 241 PMPIITFLSEWGMEPLE 257
>gi|396941909|gb|AFN89672.1| RNA polymerase II, partial [Nakazawaea holstii]
Length = 786
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 146/257 (56%), Positives = 192/257 (74%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EEAF IQ+++ +IG+RG +G+ REK I+YAK+IL KE+LPH+ +
Sbjct: 1 LEMLKPCVEEAFVIQDRETALDFIGRRGNALGIRREKRIQYAKDILTKELLPHITQEEGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET+KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPL+ LFR LFRKLT D+
Sbjct: 61 ETRKAFFLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLMANLFRILFRKLTKDIFR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+QKCV+ +D NL A+++ TIT GLKYSLATGNWG Q A RAGVSQVLN TY+S
Sbjct: 121 YMQKCVETNRDFNLALAVRSNTITAGLKYSLATGNWGEQKKAMTARAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTP 240
Query: 502 AYPILEFLEEWGTENFE 518
+ IL +LEEWG + E
Sbjct: 241 SDAILLYLEEWGMQAVE 257
>gi|396941827|gb|AFN89631.1| RNA polymerase II, partial [Naumovozyma dairenensis]
Length = 775
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 145/257 (56%), Positives = 192/257 (74%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +E+ F IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E++KA++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLFRKLT D+
Sbjct: 61 ESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+ V+ D N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 121 YMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240
Query: 502 AYPILEFLEEWGTENFE 518
PI+ FL EWG E E
Sbjct: 241 PMPIITFLSEWGMEPLE 257
>gi|396941863|gb|AFN89649.1| RNA polymerase II, partial [Hyphopichia burtonii]
Length = 783
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 146/257 (56%), Positives = 195/257 (75%), Gaps = 14/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ +
Sbjct: 1 LEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGF 59
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET+KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +
Sbjct: 60 ETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYN 119
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+CV+N K+ NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 180 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTP 239
Query: 502 AYPILEFLEEWGTENFE 518
+ PI FLEEWG E E
Sbjct: 240 SEPISYFLEEWGMEPLE 256
>gi|396941861|gb|AFN89648.1| RNA polymerase II, partial [Metschnikowia bicuspidata]
Length = 781
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 147/256 (57%), Positives = 194/256 (75%), Gaps = 14/256 (5%)
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
E+L+P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKEMLP++ E
Sbjct: 1 EMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKEMLPNITQEAGFE 59
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
++KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +Y
Sbjct: 60 SRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTRDIYNY 119
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAST 450
+Q+CV+N K+ NL A+K++TIT GL+YSLATGNWG Q A RAGVSQVLN TY+ST
Sbjct: 120 MQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQRKAMSARAGVSQVLNRYTYSST 179
Query: 451 FTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAA 502
++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+++
Sbjct: 180 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTSS 239
Query: 503 YPILEFLEEWGTENFE 518
PIL FLEEWG E E
Sbjct: 240 EPILYFLEEWGMEPLE 255
>gi|396941905|gb|AFN89670.1| RNA polymerase II, partial [Babjeviella inositovora]
Length = 758
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 144/256 (56%), Positives = 191/256 (74%), Gaps = 13/256 (5%)
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
E+L+P +EE F IQ+++ +IG+RG+ +G+ REK I+YAK+IL KE+LPH+ + E
Sbjct: 1 EMLKPCVEEGFVIQDREVALDFIGRRGSALGIRREKRIQYAKDILTKELLPHITQEEGFE 60
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
+KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKL+ D+ +
Sbjct: 61 NRKAFFLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYRH 120
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAST 450
+QKCV+ K+ +L A+K+ TIT GLKYSLATGNWG Q A +RAGVSQVLN TY ST
Sbjct: 121 MQKCVETNKEFHLTLAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYTST 180
Query: 451 FTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAA 502
++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ +
Sbjct: 181 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTTS 240
Query: 503 YPILEFLEEWGTENFE 518
PI+ FLEEWG E E
Sbjct: 241 EPIIYFLEEWGMEPLE 256
>gi|396941857|gb|AFN89646.1| RNA polymerase II, partial [Clavispora lusitaniae]
Length = 783
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 147/257 (57%), Positives = 195/257 (75%), Gaps = 14/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++
Sbjct: 1 LEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEAGF 59
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E++KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +
Sbjct: 60 ESRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRLLFKKLTRDIYN 119
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+CV+N K+ NL A+K++TIT GL+YSLATGNWG Q A RAGVSQVLN TY+S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSS 179
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+A
Sbjct: 180 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTA 239
Query: 502 AYPILEFLEEWGTENFE 518
+ PIL FLEEWG E E
Sbjct: 240 SEPILYFLEEWGMEPLE 256
>gi|146094444|ref|XP_001467277.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
infantum JPCM5]
gi|398019887|ref|XP_003863107.1| DNA-directed RNA polymerase II subunit 2, putative [Leishmania
donovani]
gi|134071642|emb|CAM70332.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
infantum JPCM5]
gi|322501339|emb|CBZ36417.1| DNA-directed RNA polymerase II subunit 2, putative [Leishmania
donovani]
Length = 1181
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 188/545 (34%), Positives = 291/545 (53%), Gaps = 55/545 (10%)
Query: 9 EEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH 68
+E+ ++ E+ W VIS++F EKGLV QQLDS+++F + I ES + R + Q+
Sbjct: 22 DENPNDDLDSEDIWEVISSFFREKGLVHQQLDSYNDFLMRIPKMI--ESMAVIPRQDDQY 79
Query: 69 NPG----QQSDFAEIYLSKPMMTESDGETAT---------LFLKAARLRNLTYSAPLYV- 114
+PG +Q D + L ++ +T + LF RLR++TY A V
Sbjct: 80 DPGVTMEEQRDQPRLVLQDVVIGNPSHQTHSYFAGGPLPPLFPNECRLRDMTYDAQAQVT 139
Query: 115 ----------DVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFI 164
D + + +PIML+S C L + L L ECP+D+GGYF+
Sbjct: 140 LGVELYHPHADTPHDTFLRNVELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQGGYFV 199
Query: 165 INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSA 224
ING+EKVLIAQE+ + NHVY F +++ + EV S+ E P T+ + M +
Sbjct: 200 INGTEKVLIAQERQAANHVYTFSRQK----GLLCEVKSIVEGSLNKPRTLQIIMQYKNKG 255
Query: 225 KGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEE 284
GS + + + + IP+ +LFRA+ AD++IL+ + D +DT M+ELLR S+ +
Sbjct: 256 P-GSGFENLMCRVAQMDETIPLFVLFRAMDMVADKEILQTVVPDLKDTAMLELLRGSMSD 314
Query: 285 AFFIQ------NQQYIGKR----GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
A +Q YIG+R A + RE A+ +L +++LPH+GT K
Sbjct: 315 ASTLQIFTREEALGYIGRRLGKQDAMANLQRE-----AESLLMRDLLPHMGTDPSANRTK 369
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
Y G+++H+LLL ALGR E DRD G+KR+D+AG LL +T ++ ++ +Q
Sbjct: 370 CLYMGYMVHKLLLVALGRHEETDRDFLGHKRIDVAGTLLTVQLQTFLAQVRKEMIKTLQD 429
Query: 395 CVDNGKDV-NLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453
N + V + I +K IT GL+ LATGN+G + GV+Q LN LTY+S+ +
Sbjct: 430 HAANPRGVFSFGRVIHSKLITDGLRRCLATGNFGDLKTGNIKTGVAQTLNRLTYSSSLSN 489
Query: 454 Y--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
S K +PR LH +QWG +CP ETPEG + GL+KN+ALM ++ G+ +
Sbjct: 490 LRRIQNPIAASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNVALMCLMSRGTDHAEV 549
Query: 506 LEFLE 510
++ ++
Sbjct: 550 VQAVQ 554
>gi|396941877|gb|AFN89656.1| RNA polymerase II, partial [Priceomyces haplophilus]
Length = 774
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 148/255 (58%), Positives = 193/255 (75%), Gaps = 14/255 (5%)
Query: 277 LLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET 332
+L+PS+EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ + ET
Sbjct: 1 MLKPSVEEGFVIQEREIALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFET 59
Query: 333 KKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYV 392
+KAY+ G++++RLLL AL R+ DDRDH+G KRLDLAGPLL LFR LFRKLT D+ +Y+
Sbjct: 60 RKAYFLGYMVNRLLLAALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYNYM 119
Query: 393 QKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTF 451
Q+CV+N K+ NL A+K++TIT GL+YSLATGNWG Q A RAGVSQVLN TY+ST
Sbjct: 120 QRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSSTL 179
Query: 452 TYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAY 503
++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ +
Sbjct: 180 SHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSE 239
Query: 504 PILEFLEEWGTENFE 518
PIL FLEEWG E E
Sbjct: 240 PILYFLEEWGMEPLE 254
>gi|396941815|gb|AFN89625.1| RNA polymerase II, partial [Tetrapisispora phaffii]
Length = 775
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 145/257 (56%), Positives = 192/257 (74%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +E F IQ+++ +IG+RG +G+ +EK I+YA++ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEAGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E++KA++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLLG LF+TLFRKLT D+
Sbjct: 61 ESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+ V+ D N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 121 YMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMTSRAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240
Query: 502 AYPILEFLEEWGTENFE 518
PI+ FL EWG E E
Sbjct: 241 PMPIITFLSEWGMEPLE 257
>gi|396941891|gb|AFN89663.1| RNA polymerase II, partial [Millerozyma farinosa]
Length = 782
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 147/256 (57%), Positives = 193/256 (75%), Gaps = 14/256 (5%)
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
E+L+P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ + E
Sbjct: 2 EMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFE 60
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
T+KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKLT D+ +Y
Sbjct: 61 TRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRLLFRKLTKDIYNY 120
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAST 450
+Q+CV+N K+ N A+K++TIT GL+YSLATGNWG Q A RAGVSQVLN TY+ST
Sbjct: 121 MQRCVENDKEFNSTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSST 180
Query: 451 FTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAA 502
++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ +
Sbjct: 181 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPS 240
Query: 503 YPILEFLEEWGTENFE 518
PIL FLEEWG E E
Sbjct: 241 EPILYFLEEWGMEPLE 256
>gi|396941843|gb|AFN89639.1| RNA polymerase II, partial [Candida abiesophila]
Length = 785
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 143/254 (56%), Positives = 188/254 (74%), Gaps = 13/254 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ+Q+ +IG+RG G+ +++ I++AK+ILQ+E LPH+
Sbjct: 1 LEMLKPCIEEGFLIQSQEVALDFIGRRGNATGIKKDRRIQFAKDILQREFLPHISQDSGH 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET KAY+ G++IHRLLLCAL R+ +DDRDH+G KRLDLAGPLL LFR LFRKL+ D+
Sbjct: 61 ETNKAYFLGYVIHRLLLCALERKEQDDRDHFGXKRLDLAGPLLANLFRILFRKLSRDIYR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+C++ G+D N+ A+K+ TIT GLKYSLATGNWG Q A ++AGVSQVLN TYAS
Sbjct: 121 YMQRCIERGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYAS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKN + M I++G+A
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNXSXMSCISVGTA 240
Query: 502 AYPILEFLEEWGTE 515
+ PI LEEWG E
Sbjct: 241 SEPITYLLEEWGLE 254
>gi|396941865|gb|AFN89650.1| RNA polymerase II, partial [Hyphopichia heimii]
Length = 783
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 145/257 (56%), Positives = 195/257 (75%), Gaps = 14/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ +
Sbjct: 1 LEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGF 59
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E++KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +
Sbjct: 60 ESRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYN 119
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+CV+N K+ NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 180 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTP 239
Query: 502 AYPILEFLEEWGTENFE 518
+ PI FLEEWG E E
Sbjct: 240 SEPISYFLEEWGMEPLE 256
>gi|270304972|gb|ACZ71424.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
Length = 174
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 146/174 (83%), Positives = 156/174 (89%), Gaps = 4/174 (2%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI A LP IRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQYIRAXLPXIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+Q C D
Sbjct: 121 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQNCXD 174
>gi|396941867|gb|AFN89651.1| RNA polymerase II, partial [Wickerhamia fluorescens]
Length = 782
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 145/257 (56%), Positives = 195/257 (75%), Gaps = 14/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ +
Sbjct: 1 LEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGF 59
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E++KA++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKLT D+ +
Sbjct: 60 ESRKAFFLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYN 119
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+CV+N K+ NL A+K++T+T GL+YSLATG WG Q NA +RA VSQVLN TY+S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTVTDGLRYSLATGXWGEQKNAMSSRAXVSQVLNRYTYSS 179
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 180 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTP 239
Query: 502 AYPILEFLEEWGTENFE 518
+ PIL FLEEWG E E
Sbjct: 240 SEPILYFLEEWGMEPLE 256
>gi|396941819|gb|AFN89627.1| RNA polymerase II, partial [Zygotorulaspora mrakii]
Length = 771
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 144/255 (56%), Positives = 191/255 (74%), Gaps = 13/255 (5%)
Query: 277 LLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET 332
+L+P +E+ F IQ+++ +IG+RG +G+ +EK I+YA++ILQKE LPH+ + E+
Sbjct: 1 MLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGFES 60
Query: 333 KKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYV 392
+KA++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLFRKLT D+ Y+
Sbjct: 61 RKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYM 120
Query: 393 QKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTF 451
Q+ V+ KD N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST
Sbjct: 121 QRTVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTL 180
Query: 452 TYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAY 503
++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPM 240
Query: 504 PILEFLEEWGTENFE 518
PI+ FL EWG E E
Sbjct: 241 PIITFLSEWGMEPLE 255
>gi|396941899|gb|AFN89667.1| RNA polymerase II, partial [Yamadazyma scolyti]
Length = 783
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 148/257 (57%), Positives = 192/257 (74%), Gaps = 14/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ Q+ +IG+RG +G+ REK I+Y K+ILQKE+LP++ +
Sbjct: 1 LEMLKPCVEEGFVIQEQEVALDFIGRRGV-LGIRREKRIQYXKDILQKELLPNITQEEGF 59
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
T+KA++ G +++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKLT D+ +
Sbjct: 60 ATRKAFFLGXMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTRDIYN 119
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+CV+N K NL A+K++TIT GL+YS ATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 120 YMQRCVENDKVFNLTLAVKSQTITDGLRYSXATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++GS+
Sbjct: 180 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSS 239
Query: 502 AYPILEFLEEWGTENFE 518
+ PIL FLEEWG E E
Sbjct: 240 SEPILVFLEEWGLEPLE 256
>gi|396941823|gb|AFN89629.1| RNA polymerase II, partial [Saccharomyces cerevisiae]
Length = 770
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 144/257 (56%), Positives = 192/257 (74%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +E+ F IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E++KA++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLF+KLT D+
Sbjct: 61 ESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+ V+ D N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 121 YMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240
Query: 502 AYPILEFLEEWGTENFE 518
PI+ FL EWG E E
Sbjct: 241 PMPIITFLSEWGMEPLE 257
>gi|15920466|ref|NP_376135.1| DNA-directed RNA polymerase subunit B [Sulfolobus tokodaii str. 7]
gi|15621249|dbj|BAB65244.1| DNA-directed RNA polymerase subunit B [Sulfolobus tokodaii str. 7]
Length = 1126
Score = 307 bits (787), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 193/520 (37%), Positives = 284/520 (54%), Gaps = 52/520 (10%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI--EIRPESQHNPGQQS 74
T E W ++ ++F+ +GLVRQ LDSF++F +N +Q+I+DE +I EI PG +
Sbjct: 4 TVNERWEIVKSFFKLRGLVRQHLDSFNDFLRNKLQQIIDEQGEIITEI-------PGLKI 56
Query: 75 DFAEIYLSKPMMTESD-GETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE----- 128
+I +P + E+D G L ARLRNLTY+ PLY+ + I+ +GE
Sbjct: 57 KLGKIRYDRPGIRETDKGPPKELTPLEARLRNLTYAVPLYLTMIP--IENNIEGEPIEVY 114
Query: 129 --EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVF 186
++PIML+S + L ++GE P D GGYFI+NG+EKV++AQE ++TN V V
Sbjct: 115 IGDLPIMLKSIADPTSNMTYDELIKIGEDPKDPGGYFIVNGTEKVIVAQEDLATNRVLVD 174
Query: 187 KKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPI 246
+ + +VA++ S A + + L SS Q AT+P +IP
Sbjct: 175 YGKSGSNITHVAKITSAAAGYR---VQVVIERLK------DSSIQVSFATVP---GKIPF 222
Query: 247 IILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVG 302
+I+ RALGFT D+DI+ + D ++ L PSLE+A I + +IG R A +G
Sbjct: 223 VIMMRALGFTTDKDIVYAVSLD---PEIQNELLPSLEQASSITTVEDALDFIGNRIA-IG 278
Query: 303 VTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYG 362
RE I+ A++I+ K LPH+GT KK YY +++LL LGRR DD+DHY
Sbjct: 279 QKRENRIQRAEQIIDKYFLPHIGTSPEDRKKKGYYLAAAVNKLLELYLGRRQPDDKDHYA 338
Query: 363 NKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLA 422
NKR+ LAG L LFR F+ D+ ++K G+ ++L ++A IT ++++LA
Sbjct: 339 NKRVRLAGDLFTSLFRVAFKAFVKDLVYQLEKAKVRGRRLSLTALVRADIITERVRHALA 398
Query: 423 TGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYL----SWKLAKP----RQLHNSQWGMMC 474
TGNW G R GVSQ+L+ + S ++ S +P R LH +QWG MC
Sbjct: 399 TGNW-----VGGRTGVSQLLDRTNWLSMLSHLRRVVSSLARGQPNFEARDLHGTQWGRMC 453
Query: 475 PAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
P ETPEG GLVKNLAL+ +++G I + + E G
Sbjct: 454 PFETPEGPNSGLVKNLALLAQVSVGINESSIEKVIYEQGV 493
>gi|260944182|ref|XP_002616389.1| hypothetical protein CLUG_03630 [Clavispora lusitaniae ATCC 42720]
gi|238850038|gb|EEQ39502.1| hypothetical protein CLUG_03630 [Clavispora lusitaniae ATCC 42720]
Length = 369
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 167/348 (47%), Positives = 226/348 (64%), Gaps = 38/348 (10%)
Query: 9 EEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH 68
+ED+ T E+ W VIS++F+EKGLV QQLDSFDEF ++T+QE+V E + + + +QH
Sbjct: 14 DEDDSNSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSHLILDQPAQH 73
Query: 69 NPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV- 120
Q + F +IY+SKP TE DG T +F + ARLRNLTYS+PLYVD+TK+
Sbjct: 74 TSEDQYENKRFEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKKKF 133
Query: 121 -----IKKGHDGE------------------EVPIMLRSSYCTLYQNSQKALTELGECPY 157
I+KG++ E +VPIMLRS +C L + EL ECPY
Sbjct: 134 TSDDRIRKGNELEWIEEKVDNEDAQSKVFLGKVPIMLRSKFCMLRDLGEHEFYELKECPY 193
Query: 158 DEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVP 217
D GGYF+INGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R S++ +
Sbjct: 194 DMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALEKGSRLISSMQIK 253
Query: 218 MLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMEL 277
+ R G SG+ I ATLPYI+ +IPI+I+FRALG D DILEHICYD D QM+E+
Sbjct: 254 LYGRDDK--GVSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEM 311
Query: 278 LRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEML 321
L+P +EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE++
Sbjct: 312 LKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKEII 358
>gi|156937444|ref|YP_001435240.1| DNA-directed RNA polymerase subunit B [Ignicoccus hospitalis
KIN4/I]
gi|156566428|gb|ABU81833.1| DNA-directed RNA polymerase, subunit B' [Ignicoccus hospitalis
KIN4/I]
Length = 1132
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 189/522 (36%), Positives = 291/522 (55%), Gaps = 47/522 (9%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T E+ WA++ AYF+EKGLV QQL+S+++F TMQ++++E ++E G + +F
Sbjct: 9 TPEDRWAIMRAYFKEKGLVSQQLESYNKFVTETMQKLIEELGEVE-----PFESGYKLEF 63
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE------- 129
+I +P++ E G T + R+R+LTY+AP+YV + R KG +E
Sbjct: 64 IKIRYGEPIIKEKSGGTRPVTPTECRIRDLTYAAPIYVYMRLRN-PKGEIKDEGWVEIGM 122
Query: 130 VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
+P+M+RS L + S + L E GE P D GGYFI++GSEKV++ QE ++ N V V K
Sbjct: 123 MPVMVRSILDPLSKKSPEELVEAGEDPRDPGGYFIVDGSEKVIVTQEDLALNKVLVDKGG 182
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
+ + A+V S V ++ G +HA P + +IP+++L
Sbjct: 183 PQSTVTHTAKVLSTTLGYR-------VQVIVERQKDG-----TLHAIFPPLPGKIPLVVL 230
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
RALG +D+DI + +D + Q ELL PS+E+A + +IG R A +G+ R
Sbjct: 231 IRALGIESDKDITSLVSFDPEVQQ--ELL-PSIEQAASVPTVDDALDFIGARIA-IGMPR 286
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
+K I+ AK++L +LPH+G KKA + H+ +LL L +R DD+DHY N+R
Sbjct: 287 DKRIERAKQVLDNNLLPHLGKRPEDRIKKAIFLAHMARKLLEVYLEKREPDDKDHYANRR 346
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD-VNLQFAIKAKTITGGLKYSLATG 424
L LAG +L LFRT R L DV +++ V G++ + L+ I++ +T ++ +LATG
Sbjct: 347 LKLAGDMLAALFRTHLRGLLNDVGYQLERSVLKGEERLKLRILIRSNYLTDKVRQALATG 406
Query: 425 NWGQGNAAGTRAGVSQVLNCLTYASTFTYY--LSWKLAK------PRQLHNSQWGMMCPA 476
NW G R GVSQ+L+ + ST ++ + LA+ R+LH +QWG +CP
Sbjct: 407 NW-----VGNRTGVSQLLDRTNWLSTLSHLRRVVSPLARNQPHYEARELHMTQWGRICPF 461
Query: 477 ETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
ETPEG GLVKNLAL +I++G + + L+E G E
Sbjct: 462 ETPEGPNIGLVKNLALSAHISVGVPEEEVEKVLDELGVIRVE 503
>gi|270304974|gb|ACZ71425.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
Length = 169
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 145/169 (85%), Positives = 155/169 (91%), Gaps = 4/169 (2%)
Query: 229 SGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI 288
SGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF I
Sbjct: 1 SGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFVI 60
Query: 289 QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
QNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIHR
Sbjct: 61 QNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHR 120
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQ 393
LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR Y+Q
Sbjct: 121 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQ 169
>gi|45545317|gb|AAS67506.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Ceramothyrium linnaeae]
Length = 936
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 162/365 (44%), Positives = 222/365 (60%), Gaps = 14/365 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V +F+K P + ++AE+ S+ E R S + R G
Sbjct: 1 SEKVLIAQERSAGNIVQIFQKAAPAPFTHLAEIRSVIEKGARMMSQCTAKLYRRVDGPDG 60
Query: 228 SSGQY-IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
S + I LPY++ +IP+ I+FRAL +D DILE IC+D +D +MM++L SL+E
Sbjct: 61 SKIENPIRVQLPYVKQDIPLAIVFRALDIVSDTDILEKICFDQRDQEMMDMLMGSLQEGQ 120
Query: 287 FIQN----QQYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ + YI +RG + + K+A +IL KE LPH+G +KA++ G+++
Sbjct: 121 PIQGADLARDYIARRGNVPSLKSHERQKHAIDILTKEFLPHIGQTSDATARKAFFLGYMV 180
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
+R+L CALGR DDRDH G KRLDL+GPL+ LFR K T D Y+QK V++G+ +
Sbjct: 181 NRMLKCALGRTEPDDRDHLGKKRLDLSGPLMANLFRMQLDKATKDFFRYMQKRVESGQTI 240
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------- 454
++ K +T GLKYSLATGNWG Q +AGVSQVL+ T+AST ++
Sbjct: 241 AIKAGWKPNIVTNGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFASTLSHLRRTNAPI 300
Query: 455 -LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
K+AKPRQLHN+ WG +CPAETPEGQACGLVKNLALM +T P+ ++ E
Sbjct: 301 GREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLALMSMVTNHYDTAPLQSYILEKN 360
Query: 514 TENFE 518
E E
Sbjct: 361 VEALE 365
>gi|396941907|gb|AFN89671.1| RNA polymerase II, partial [Citeromyces matritensis]
Length = 784
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 144/256 (56%), Positives = 186/256 (72%), Gaps = 13/256 (5%)
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
E+L P EE F IQ ++ + G+RG+ +G+ R K I YA++ILQKE LPH+ + E
Sbjct: 1 EMLXPCXEEGFVIQXREVALDFXGRRGSALGIRRXKRIXYARDILQKEFLPHISQEEGFE 60
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
T+KA++ G++++RLLLCAL R+ EDDRDH+G KRLDLAGPL+ GLFR LFRKLT D+ Y
Sbjct: 61 TRKAFFLGYMVNRLLLCALERKEEDDRDHFGRKRLDLAGPLMAGLFRVLFRKLTKDIYRY 120
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAST 450
+Q+CV+ KD N A+K IT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST
Sbjct: 121 MQRCVETNKDFNXNLAVKPSIITNGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 180
Query: 451 FTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAA 502
++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++GS +
Sbjct: 181 LSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSPS 240
Query: 503 YPILEFLEEWGTENFE 518
IL++L+EWG E E
Sbjct: 241 DMILDYLDEWGMEPLE 256
>gi|396941913|gb|AFN89674.1| RNA polymerase II, partial [Peterozyma toletana]
Length = 775
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 144/247 (58%), Positives = 185/247 (74%), Gaps = 13/247 (5%)
Query: 285 AFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGH 340
AF IQ+++ +IG+RG +G+ REK I+YAK+ILQKE+LPH+ + ET+KA++ G+
Sbjct: 1 AFVIQDRETALDFIGRRGNALGIRREKRIQYAKDILQKELLPHITQEEGFETRKAFFLGY 60
Query: 341 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK 400
+++RLLLCAL R+ +DDRDH+G KRLDLAGPL+ LFR LFRKLT D+ Y+Q+CV+ +
Sbjct: 61 MVNRLLLCALERKEQDDRDHFGKKRLDLAGPLMANLFRILFRKLTKDIFRYMQRCVETNR 120
Query: 401 DVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY----- 454
D NL A+KA TIT GLKYSLATGNWG Q A RAGVSQVLN TY+ST ++
Sbjct: 121 DFNLTLAVKANTITSGLKYSLATGNWGEQKKAMTARAGVSQVLNRYTYSSTLSHLRRTNT 180
Query: 455 ---LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEE 511
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++GS + I+ FLEE
Sbjct: 181 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSPSDTIIFFLEE 240
Query: 512 WGTENFE 518
WG + E
Sbjct: 241 WGMQAVE 247
>gi|396941807|gb|AFN89621.1| RNA polymerase II, partial [Kuraishia capsulata]
Length = 780
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 142/257 (55%), Positives = 188/257 (73%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ+++ +IG+RG VG+ +EK I++A++IL KE LPH+
Sbjct: 1 LEMLKPCVEEGFLIQDREVALDFIGRRGNAVGIRKEKRIQFARDILTKEFLPHITQEPGY 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E +KA++ G+I++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KL+ D+
Sbjct: 61 ENRKAFFLGYIVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLSRDIYR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+QKC++ K+ NL A+K+ TIT GLKYSLATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 121 YMQKCIETNKEFNLALAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTP 240
Query: 502 AYPILEFLEEWGTENFE 518
+ P+ LEEWG E E
Sbjct: 241 SDPLHYLLEEWGMEPLE 257
>gi|68131848|gb|AAY85202.1| RNA polymerase II second largest subunit [Dianthus caryophyllus]
Length = 674
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 147/176 (83%), Positives = 152/176 (86%), Gaps = 8/176 (4%)
Query: 351 GRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKA 410
GRR EDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR+YVQK VD GKD+NL FAIKA
Sbjct: 1 GRREEDDRDHYGNKRLDLAGPLLGGLFRQLFRKLTRDVRAYVQKNVDQGKDLNLTFAIKA 60
Query: 411 KTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKP 462
KTIT GLKYSLATGNWG NAAGTRAGVSQVLN LTYAST ++ KLAKP
Sbjct: 61 KTITSGLKYSLATGNWGAANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 120
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPILEFLEEW TENFE
Sbjct: 121 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWSTENFE 176
>gi|396941811|gb|AFN89623.1| RNA polymerase II, partial [Ascoidea rubescens]
Length = 777
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/257 (56%), Positives = 191/257 (74%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L P ++EAF +Q+ Q +IG RG ++G +EK I+YAK+ILQ+E+LPH+ +
Sbjct: 1 LEMLXPCIDEAFSVQDTQVALNFIGTRGRSLGARKEKRIQYAKDILQRELLPHITQLEGY 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E++KA++ G++IHRLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFR LT D+
Sbjct: 61 ESRKAFFLGYMIHRLLLCALERKEADDRDHFGKKRLDLAGPLLAKLFRILFRNLTKDIFR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+QKC+++ K NL+ AIK+ IT GLKYSLATGNWG Q A ++AGVSQVLN TY+S
Sbjct: 121 YLQKCIESNKAFNLKMAIKSGIITEGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++GS
Sbjct: 181 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSVISVGSP 240
Query: 502 AYPILEFLEEWGTENFE 518
+ ILE+LEE+G E E
Sbjct: 241 SSIILEYLEEFGLEPLE 257
>gi|396941943|gb|AFN89688.1| RNA polymerase II, partial [Komagataella pastoris]
Length = 771
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 143/248 (57%), Positives = 186/248 (75%), Gaps = 14/248 (5%)
Query: 285 AFFIQNQQ----YIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFG 339
F IQ+++ +IG+RG A +G+ REK I+YAK+ILQKE+LPH+ + ET+K ++ G
Sbjct: 1 GFVIQDKEVALDFIGRRGSAALGIRREKRIQYAKDILQKELLPHITQEEGFETRKTFFLG 60
Query: 340 HIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNG 399
++++RLLLCAL R+ +DDRDH+G KRLDLAGPLL LFR LFRKLT ++ Y+Q+C++
Sbjct: 61 YMVNRLLLCALERKDQDDRDHFGKKRLDLAGPLLANLFRILFRKLTREIYRYMQRCIETD 120
Query: 400 KDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY---- 454
+D NL A+K+ TIT GLKYSLATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 121 RDFNLNLAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTN 180
Query: 455 ----LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLE 510
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+L+ I+IGS + PI+ FLE
Sbjct: 181 TPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLLSGISIGSPSEPIINFLE 240
Query: 511 EWGTENFE 518
EWG E E
Sbjct: 241 EWGMEPLE 248
>gi|396941869|gb|AFN89652.1| RNA polymerase II, partial [Lodderomyces elongisporus]
Length = 784
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 143/253 (56%), Positives = 191/253 (75%), Gaps = 14/253 (5%)
Query: 276 ELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCE 331
E+L+P +EE F IQ ++ +IG+RG +G+ EK I+YAK+ILQKE+LP++ + E
Sbjct: 1 EMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRXEKRIQYAKDILQKELLPNITQEEGFE 59
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
T+KA+ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +Y
Sbjct: 60 TRKAFXLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNY 119
Query: 392 VQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAST 450
+Q+CV+N K+ NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST
Sbjct: 120 MQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 179
Query: 451 FTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAA 502
++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ +
Sbjct: 180 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPS 239
Query: 503 YPILEFLEEWGTE 515
PIL FL +WG E
Sbjct: 240 DPILSFLRDWGLE 252
>gi|396941853|gb|AFN89644.1| RNA polymerase II, partial [Kodamaea ohmeri]
Length = 766
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 145/249 (58%), Positives = 187/249 (75%), Gaps = 14/249 (5%)
Query: 283 EEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYF 338
EE F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ + ET+KA++
Sbjct: 1 EEGFVIQEREVALDFIGRRGV-MGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFL 59
Query: 339 GHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN 398
G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKLT D+ +Y+Q+CV+N
Sbjct: 60 GYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYNYMQRCVEN 119
Query: 399 GKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--- 454
K+ NL A+K++TIT GL+YSLATGNWG Q A RAGVSQVLN TY+ST ++
Sbjct: 120 DKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSSTLSHLRRT 179
Query: 455 -----LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFL 509
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ PIL FL
Sbjct: 180 NTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPLEPILYFL 239
Query: 510 EEWGTENFE 518
EEWG E E
Sbjct: 240 EEWGMEPLE 248
>gi|89274918|gb|ABD65900.1| RNA polymerase II second largest subunit, partial [Scytinostroma
alutum]
Length = 434
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 143/235 (60%), Positives = 175/235 (74%), Gaps = 9/235 (3%)
Query: 293 YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGR 352
+IG RG T G++R++ I+YA+EILQKEMLPHV + E++KAY+FG+++HRLLL A+ R
Sbjct: 5 FIGNRGTTTGLSRDRRIRYAQEILQKEMLPHVSMSEGSESRKAYFFGYMVHRLLLAAMER 64
Query: 353 RAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKT 412
R DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV+ K+ N AIK T
Sbjct: 65 RELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHKEFNFNLAIKHTT 124
Query: 413 ITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPR 463
IT GLKYSLATGNWG Q A +AGVSQVLN TY ST ++ K+AKPR
Sbjct: 125 ITNGLKYSLATGNWGDQKKAMSAKAGVSQVLNRYTYVSTLSHLRRCNTPLGREGKIAKPR 184
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
QLHN WGM+CPAETPEGQACGLVKNL+LM I++GS + I++FL+EWG E+ E
Sbjct: 185 QLHNHHWGMVCPAETPEGQACGLVKNLSLMACISVGSTSGTIVDFLDEWGLESLE 239
>gi|396941957|gb|AFN89695.1| RNA polymerase II, partial [Trigonopsis variabilis]
Length = 757
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 140/235 (59%), Positives = 177/235 (75%), Gaps = 9/235 (3%)
Query: 293 YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGR 352
YIG+RGA +G+ +EK ++YA++ILQKE+LPH+ + ET+KA++ G+++HR+LL A+GR
Sbjct: 9 YIGRRGAAMGINKEKRLRYARDILQKELLPHITQEEGFETRKAFFLGYMVHRMLLVAMGR 68
Query: 353 RAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKT 412
DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV+ KD NL A+K+ T
Sbjct: 69 AEVDDRDHFGKKRLDLAGPLLAKLFRDLFRKLTRDVYRYMQKCVETNKDFNLTLAVKSNT 128
Query: 413 ITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPR 463
IT GL+YSLATGNWG Q RAGVSQVLN T++ST ++ K+AKPR
Sbjct: 129 ITNGLRYSLATGNWGDQKKFMSARAGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKIAKPR 188
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
QLHN+ WG++CPAETPEGQACGLVKNL+LM I++GS A PI+ FLEEWG E E
Sbjct: 189 QLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSPAEPIICFLEEWGMEPLE 243
>gi|70606496|ref|YP_255366.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
DSM 639]
gi|449066708|ref|YP_007433790.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
N8]
gi|449068982|ref|YP_007436063.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
Ron12/I]
gi|73920765|sp|P11513.2|RPOB_SULAC RecName: Full=DNA-directed RNA polymerase subunit B
gi|68567144|gb|AAY80073.1| DNA directed RNA polymerase subunit B [Sulfolobus acidocaldarius
DSM 639]
gi|449035216|gb|AGE70642.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
N8]
gi|449037490|gb|AGE72915.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
Ron12/I]
Length = 1126
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 186/501 (37%), Positives = 272/501 (54%), Gaps = 48/501 (9%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
E WA+ ++F+ +GLVRQ LDSF++F +N +Q+++ E +I PG + +
Sbjct: 5 ESRWAIAESFFKTRGLVRQHLDSFNDFLRNKLQQVIYEQGEI-----VTEVPGLKIKLGK 59
Query: 79 IYLSKPMMTESD-GETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE-------EV 130
I KP + E+D G + ARLRNLTYS+P+++ + ++ +GE ++
Sbjct: 60 IRYEKPSIRETDKGPMREITPMEARLRNLTYSSPIFLSMIP--VENNIEGEPIEIYIGDL 117
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
PIML+S L E+GE P D GGYFI+NGSEKV+IAQE ++TN V V +
Sbjct: 118 PIMLKSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKVIIAQEDLATNRVLVDYGKS 177
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILF 250
+ +VA+V S A M+ R S+ Q AT+P IP I+
Sbjct: 178 GSNITHVAKVTSSAAGYR------VQVMIERLK---DSTIQISFATVP---GRIPFAIIM 225
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTRE 306
RALGF D DI+ + D Q+ L PSLE+A I + + +IG R A +G RE
Sbjct: 226 RALGFVTDRDIVYAVSLD---PQIQNELLPSLEQASSITSAEEALDFIGNRVA-IGQKRE 281
Query: 307 KMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRL 366
I+ A++++ K LPH+GT KK YY ++++L LGRR DD+DHY NKR+
Sbjct: 282 NRIQKAEQVIDKYFLPHLGTSPEDRKKKGYYLASAVNKILELYLGRREPDDKDHYANKRV 341
Query: 367 DLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNW 426
LAG L LFR F+ D+ ++K G+ ++L ++A IT ++++LATGNW
Sbjct: 342 RLAGDLFTSLFRVAFKAFVKDLVYQLEKSKVRGRRLSLTALVRADIITERIRHALATGNW 401
Query: 427 GQGNAAGTRAGVSQVLNCLTYASTFTYYL----SWKLAKP----RQLHNSQWGMMCPAET 478
G R GVSQ+L+ + S ++ S +P R LH +QWG MCP ET
Sbjct: 402 -----VGGRTGVSQLLDRTNWLSMLSHLRRVVSSLARGQPNFEARDLHGTQWGRMCPFET 456
Query: 479 PEGQACGLVKNLALMVYITIG 499
PEG GLVKNLAL+ +++G
Sbjct: 457 PEGPNSGLVKNLALLAQVSVG 477
>gi|45545319|gb|AAS67507.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Coccodinium bartschii]
Length = 940
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 158/365 (43%), Positives = 221/365 (60%), Gaps = 14/365 (3%)
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEKVLIAQE+ + N V VF+K + ++AE+ S+ + +R S V + R G
Sbjct: 1 SEKVLIAQERSAGNIVQVFQKVALAPFTHLAEIRSVIDKGSRMMSQCTVKLFRRAEGPDG 60
Query: 228 SSGQY-IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
+ + I LPY++ +IP++I+FRAL +D DILE IC+D D +MM++L SL+E
Sbjct: 61 TKIENPIRVQLPYVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMMDMLMGSLQEGQ 120
Query: 287 FIQN----QQYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ+ + +I +RG G+ K A +IL KE LPH+G KKA++ G+++
Sbjct: 121 PIQSAELARDFIARRGNQSGLKAGDRQKQALDILVKEFLPHIGQTPDAAAKKAFFLGYMV 180
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
R+L CALGR DDRDH G KRLDL+GPL+ LFR T D +Y+++ ++ G
Sbjct: 181 QRMLKCALGRTEPDDRDHLGKKRLDLSGPLMANLFRMKLDTATKDFFNYMKRRIEAGAGF 240
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------- 454
+++ K IT GLKYSLATGNWG Q +AGVSQVL+ T+AST ++
Sbjct: 241 SIKAGFKPGIITNGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFASTLSHLRRTNAPI 300
Query: 455 -LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
K+AKPRQLHN+ WG +CPAETPEGQACGLVKNL+LM +T P++ ++ E
Sbjct: 301 GREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMTMVTPSRDTTPLMTYILEKN 360
Query: 514 TENFE 518
E E
Sbjct: 361 VEALE 365
>gi|396941933|gb|AFN89683.1| RNA polymerase II, partial [Wickerhamiella domercqiae]
Length = 781
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 145/257 (56%), Positives = 195/257 (75%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E L+P +EE FF+Q++Q +IG+RG+ G++++K I+YA++ILQKE+LPH+ +
Sbjct: 1 LEALKPCVEEGFFVQDRQVALDFIGRRGSVTGISKDKRIRYARDILQKELLPHITQQEGY 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET+KA++ G+++HR+LL AL RR +DDRDH+G KRLDLAGPLL LFR LF+KLT D+
Sbjct: 61 ETRKAFFLGYMVHRMLLVALDRRDQDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDIFR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+QKCV+ KD N+ A+K+ TIT GLKYSLATGNWG Q A ++AGVSQVLN TY+S
Sbjct: 121 YMQKCVEGNKDFNVTLAVKSNTITNGLKYSLATGNWGDQKRAMSSKAGVSQVLNRYTYSS 180
Query: 450 TFTYYL--------SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM +++GS
Sbjct: 181 TLSHLRRTNTPIGKDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTGVSVGSP 240
Query: 502 AYPILEFLEEWGTENFE 518
+ PI+ FLEEWG E E
Sbjct: 241 SDPIIYFLEEWGMEPLE 257
>gi|307595330|ref|YP_003901647.1| DNA-directed RNA polymerase subunit B [Vulcanisaeta distributa DSM
14429]
gi|307550531|gb|ADN50596.1| DNA-directed RNA polymerase subunit B [Vulcanisaeta distributa DSM
14429]
Length = 1141
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 185/516 (35%), Positives = 280/516 (54%), Gaps = 45/516 (8%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
+ ++ W ++ A+ E GLVR Q+DSF++F + +QEIV+E+ IE + G
Sbjct: 33 SSDDRWELVRAFIREGGLVRHQIDSFNDFVEKKLQEIVNENNIIETEVK-----GLYIKL 87
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV-----P 131
I + KP + E+D L+ ARLRNLTY+APLY+ + V + D ++V P
Sbjct: 88 ERIEVGKPRVREADASEHILYPMEARLRNLTYAAPLYLTMVLYVNDEEVDRQKVYIGDLP 147
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IM+RS +C LY ++ L E P D GGYFIINGSE+V+++QE ++ N + + K
Sbjct: 148 IMVRSKFCNLYGLKRQELISKLEDPDDPGGYFIINGSERVIVSQEDLAPNKPF-YDKGDK 206
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFR 251
+VA+V S+ +T+ V + G I+ T P I T IP I+ R
Sbjct: 207 ASITHVAKVISIGAGYK---TTVTV-----ERHRDG----IIYVTFPAIATRIPFPIIMR 254
Query: 252 ALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ-----QYIGKRGATVGVTRE 306
ALG DEDI+ + D + L PSL+ + I + +IG + A +G RE
Sbjct: 255 ALGLETDEDIVLAVS---DDPDIQNELLPSLQFSVQIASTVDDALDFIGSKVA-IGQPRE 310
Query: 307 KMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRL 366
I+ AK++L + LPH+GT + KKA G ++ ++ LGRR DD+DH NKR+
Sbjct: 311 VRIERAKQVLDRYFLPHLGTTEDARIKKALMVGQMVKGVIEMYLGRRQPDDKDHIANKRV 370
Query: 367 DLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNW 426
L G L+ LFR +FR++ D+R +++ GK +L ++A IT +++++ATGNW
Sbjct: 371 RLVGDLMAQLFRAVFRQVLQDIRQQLERHYSRGKIPSLVTLVRADIITERVRHAIATGNW 430
Query: 427 GQGNAAGTRAGVSQVLNCLTYASTFTYY--LSWKLAK------PRQLHNSQWGMMCPAET 478
G R GVSQ+L+ ST ++ + L++ R LH +QWG +C ET
Sbjct: 431 -----IGGRTGVSQMLDRTNIMSTLSHLRRVVSNLSRTQPHFEARDLHPTQWGRLCAIET 485
Query: 479 PEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
PEGQ CGLVKNLAL+ IT+G + + L + G
Sbjct: 486 PEGQNCGLVKNLALLSTITVGVDENEVEKLLYDLGV 521
>gi|325969565|ref|YP_004245757.1| DNA-directed RNA polymerase subunit beta [Vulcanisaeta moutnovskia
768-28]
gi|323708768|gb|ADY02255.1| DNA-directed RNA polymerase subunit beta [Vulcanisaeta moutnovskia
768-28]
Length = 1141
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 185/516 (35%), Positives = 280/516 (54%), Gaps = 45/516 (8%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
+ ++ WA++ A+ E GLVR Q+DSF++F + +QE+V+E++ IE + G
Sbjct: 33 SSDDRWALVDAFISEGGLVRHQIDSFNDFVEKKLQEVVNENSLIETEVK-----GLYIKL 87
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV-----P 131
I + KP + E+D L+ ARLRNLTY+APLY+ + V + D ++V P
Sbjct: 88 ERIEVGKPRVREADASEHILYPMEARLRNLTYAAPLYLTMVLYVNDEEVDRQKVYIGDLP 147
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IM++S +C LY ++ L E P D GGYFIINGSE+V+++QE ++ N + F K
Sbjct: 148 IMIKSKFCNLYGLKRQELISKLEDPDDPGGYFIINGSERVIVSQEDLAPNKPF-FDKGDK 206
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFR 251
VA+V S+ +T+ V + G I+ T P I T IP I+ R
Sbjct: 207 ASITNVAKVISIGAGYK---TTVTV-----ERHRDG----IIYVTFPAIATRIPFPIIMR 254
Query: 252 ALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ-----QYIGKRGATVGVTRE 306
ALG DEDI+ + D + L PSL+ + I + +IG + A +G RE
Sbjct: 255 ALGLETDEDIVLAVS---DDPDIQNELLPSLQFSVQIASTIDDALDFIGSKVA-IGQPRE 310
Query: 307 KMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRL 366
I+ AK++L + LPH+G + KKA G ++ ++ LGRR DD+DH NKR+
Sbjct: 311 VRIERAKQVLDRYFLPHLGATEEARVKKALLVGQMVKGVIEMYLGRRQPDDKDHIANKRV 370
Query: 367 DLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNW 426
L G LL LFR +F+++ D+R +++ GK +L ++A IT ++++LATGNW
Sbjct: 371 RLVGDLLAQLFRAVFKQVLQDIRQQLERHYSRGKIPSLVTLVRADIITERIRHALATGNW 430
Query: 427 GQGNAAGTRAGVSQVLNCLTYASTFTYY--LSWKLAK------PRQLHNSQWGMMCPAET 478
G R GVSQ+L+ ST ++ + L++ R LH +QWG +C ET
Sbjct: 431 -----IGGRTGVSQMLDRTNVLSTLSHLRRIVSNLSRTQPHFEARDLHPTQWGRLCAIET 485
Query: 479 PEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
PEGQ CGLVKNLAL+ IT+G + + L + G
Sbjct: 486 PEGQNCGLVKNLALLSTITVGVNENEVEKMLYDLGV 521
>gi|46669|emb|CAA32924.1| RNA polymerase subunit B (AA 1-1126) [Sulfolobus acidocaldarius]
Length = 1126
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 185/501 (36%), Positives = 272/501 (54%), Gaps = 48/501 (9%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
E WA+ ++F+ +GLVRQ LDSF++F +N +Q+++ E +I PG + +
Sbjct: 5 ESRWAIAESFFKTRGLVRQHLDSFNDFLRNKLQQVIYEQGEI-----VTEVPGLKIKLGK 59
Query: 79 IYLSKPMMTESD-GETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE-------EV 130
I KP + E+D G + ARLRNLTYS+P+++ + ++ +GE ++
Sbjct: 60 IRYEKPSIRETDKGPMREITPMEARLRNLTYSSPIFLSMIP--VENNIEGEPIEIYIGDL 117
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
PIML+S L E+GE P D GGYFI+NGSEK++IAQE ++TN V V +
Sbjct: 118 PIMLKSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKMIIAQEDLATNRVLVDYGKS 177
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILF 250
+ +VA+V S A M+ R S+ Q AT+P IP I+
Sbjct: 178 GSNITHVAKVTSSAAGYR------VQVMIERLK---DSTIQISFATVP---GRIPFAIIM 225
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTRE 306
RALGF D DI+ + D Q+ L PSLE+A I + + +IG R A +G RE
Sbjct: 226 RALGFVTDRDIVYAVSLD---PQIQNELLPSLEQASSITSAEEALDFIGNRVA-IGQKRE 281
Query: 307 KMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRL 366
I+ A++++ K LPH+GT KK YY ++++L LGRR DD+DHY NKR+
Sbjct: 282 NRIQKAEQVIDKYFLPHLGTSPEDRKKKGYYLASAVNKILELYLGRREPDDKDHYANKRV 341
Query: 367 DLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNW 426
LAG L LFR F+ D+ ++K G+ ++L ++A IT ++++LATGNW
Sbjct: 342 RLAGDLFTSLFRVAFKAFVKDLVYQLEKSKVRGRRLSLTALVRADIITERIRHALATGNW 401
Query: 427 GQGNAAGTRAGVSQVLNCLTYASTFTYYL----SWKLAKP----RQLHNSQWGMMCPAET 478
G R GVSQ+L+ + S ++ S +P R LH +QWG MCP ET
Sbjct: 402 -----VGGRTGVSQLLDRTNWLSMLSHLRRVVSSLARGQPNFEARDLHGTQWGRMCPFET 456
Query: 479 PEGQACGLVKNLALMVYITIG 499
PEG GLVKNLAL+ +++G
Sbjct: 457 PEGPNSGLVKNLALLAQVSVG 477
>gi|396941841|gb|AFN89638.1| RNA polymerase II, partial [Hanseniaspora valbyensis]
Length = 809
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 141/257 (54%), Positives = 191/257 (74%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ+++ +IG+RGA +G+ +EK I+Y K+ILQKE +PH+ +
Sbjct: 1 LEMLKPCVEEGFVIQDRETALDFIGRRGAALGIKKEKRIQYVKDILQKEFIPHITRKEGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E +KA++ G++++RLLLCAL R+ +DDRDH+G KRLDL GPLL LFRTLF+K+T D+
Sbjct: 61 ENRKAFFLGYMVNRLLLCALDRKDQDDRDHFGKKRLDLGGPLLAQLFRTLFKKVTRDIFR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
+Q+ V+ GKD L+ AIK +TIT GLKY+LATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 121 VMQRSVEEGKDFILKTAIKHQTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++GS
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSGISVGSD 240
Query: 502 AYPILEFLEEWGTENFE 518
PI+ +L+E+G E E
Sbjct: 241 PEPIIAYLKEFGLEPLE 257
>gi|315230005|ref|YP_004070441.1| DNA-directed RNA polymerase subunit B [Thermococcus barophilus MP]
gi|315183033|gb|ADT83218.1| DNA-directed RNA polymerase subunit B [Thermococcus barophilus MP]
Length = 1118
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 189/531 (35%), Positives = 295/531 (55%), Gaps = 57/531 (10%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E T ++ W+V+ +Y+ EKGLVRQ LDS++ F + MQE+++E I +P+ P +
Sbjct: 8 EVTPDDLWSVMESYWNEKGLVRQHLDSYNAFIDHGMQEVINEFGGI--KPDI---PNFEV 62
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE------ 128
F +I L +P E+ G+ L+ AR+RNLTY+AP+Y+++ V G + E
Sbjct: 63 KFGKIRLGEPEFQEAQGQRKPLYPMDARIRNLTYAAPIYLEMIPVV--NGIEQEPVEVRI 120
Query: 129 -EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
E+PIML+S C LY S++ L +LGE P D GGYFIINGSE+V+++ E ++ N V K
Sbjct: 121 GELPIMLKSKACRLYGKSEEELIKLGEDPKDPGGYFIINGSERVIVSIEDLAPNRTLVEK 180
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+ +K VA+ S + +++ K G ++ ++P + + +
Sbjct: 181 DERQDKV--VAKCFSYRHG--------YRALIAVERRKDG----LLYVSIPNVPGVVKFV 226
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGV 303
+ RALG +D++I++ I D ++ ++L +LE+A IQ Q+ YIGK+ A G
Sbjct: 227 YVMRALGLESDKEIVDAIS---DDPRIQQVLFDNLEDASDIQTQEEALDYIGKK-ALPGQ 282
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
RE ++ A+ I+ +LPH+G KKAYY G + ++L +LG R EDD+DHY N
Sbjct: 283 PREYRLRRAESIIDNNLLPHMGVRPEDRIKKAYYLGMMALKVLELSLGLRGEDDKDHYAN 342
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV----NLQF----AIKAKTITG 415
KRL LAG LL LFR F +L D++ + K + N+Q +++ +T
Sbjct: 343 KRLRLAGDLLRDLFRVAFGQLVKDMQYQLTKTYQRKGEKYVFENVQRFVRNSVRPDVLTE 402
Query: 416 GLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY--LSWKLAK------PRQLHN 467
++++LATG W G R GVSQ+L+ Y ST ++ ++ L++ R LH
Sbjct: 403 RIEHALATGAW-----PGGRTGVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEARDLHG 457
Query: 468 SQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
+ WG +CP ETPEG CGLVKNLALM IT +L++L + G + E
Sbjct: 458 THWGRICPTETPEGPNCGLVKNLALMAQITTAIPEEEVLKYLRKLGIVSIE 508
>gi|14591329|ref|NP_143407.1| DNA-directed RNA polymerase subunit B [Pyrococcus horikoshii OT3]
gi|3257974|dbj|BAA30657.1| 1117aa long hypothetical DNA-directed RNA polymerase subunit B
[Pyrococcus horikoshii OT3]
Length = 1117
Score = 298 bits (763), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 190/531 (35%), Positives = 285/531 (53%), Gaps = 57/531 (10%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E T ++ W V+ +Y+EEKGLVRQ LDS++ F + +QE+VDE I +P+ P +
Sbjct: 8 EVTPDDLWIVMESYWEEKGLVRQHLDSYNAFIERGLQEVVDEFGGI--KPDI---PDFEV 62
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV---- 130
F +I + +P E G+ L+ AR+RNLTYSAPLY+++ + D EV
Sbjct: 63 KFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQDPVEVRIGE 122
Query: 131 -PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
PIML+S C LY S + L +LGE P D GGYFIINGSE+V+++ E ++ N V K
Sbjct: 123 LPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDE 182
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
+ KY +A+V S + +++ K G ++ +P + + + +
Sbjct: 183 RQEKY--IAKVFSYRHG--------YRALVTVERKKDG----ILYVGIPNVPRPVKFVYV 228
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
RALG D+DI++ + D ++ ++L +LE+A I QQ YIGK A G R
Sbjct: 229 MRALGLERDKDIVDAVG---NDPEVQQILFDNLEDASDITTQQEALEYIGKLVAP-GQAR 284
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
E +K A+ ++ +LPH+G +KAYY G + +++ +LG+R EDD+DHY NKR
Sbjct: 285 EYRLKRAEYVIDNNLLPHMGVTPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKR 344
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYV--------QKCVDNGKDVNLQFAIKAKTITGGL 417
L LAG LL LFR F +L D++ + +K V + ++ +I+ +T +
Sbjct: 345 LRLAGDLLKDLFRVAFSQLIKDIQYQMTKTYQRRGEKYVFSNIHRFIRNSIRPDVLTERI 404
Query: 418 KYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHN 467
+++LATG W G R GVSQ+L+ Y ST ++ ++ P R LH
Sbjct: 405 EHALATGAW-----PGGRTGVSQLLDRTNYVSTLSHLR--RVTSPLDREQPHFEARDLHG 457
Query: 468 SQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
+ WG +CP ETPEG CGLVKNLALM IT + E+L G E
Sbjct: 458 THWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVREYLMSLGIVPIE 508
>gi|396941839|gb|AFN89637.1| RNA polymerase II, partial [Saccharomycodes ludwigii]
Length = 782
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 141/257 (54%), Positives = 189/257 (73%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +EE F IQ+++ +IG RG+ +G+ +EK I+ K+ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEEGFVIQDRETALDFIGXRGSAIGIKKEKRIQXVKDILQKEFLPHITQLEGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E +KA++ G++++RLLLCAL R+ +DD DH+G KRLDLAGPLL LFRTLF+KLT D+
Sbjct: 61 EGRKAFFXGYMVNRLLLCALDRKDQDDXDHFGKKRLDLAGPLLAQLFRTLFKKLTRDIFR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
++Q+ V+ KD NL+ A+KA T+T GLKY+LATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 121 FMQRSVEEAKDFNLKLAVKAXTLTXGLKYALATGNWGEQKKAMTSRAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240
Query: 502 AYPILEFLEEWGTENFE 518
PI+ FL EWG E E
Sbjct: 241 PSPIITFLNEWGMEPLE 257
>gi|332157775|ref|YP_004423054.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. NA2]
gi|331033238|gb|AEC51050.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. NA2]
Length = 1117
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 188/531 (35%), Positives = 284/531 (53%), Gaps = 57/531 (10%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E T ++ W V+ +Y++EKGLVRQ LDS++ F + +QE+VDE I +P+ P +
Sbjct: 8 EVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIERGLQEVVDEVGGI--KPDI---PDFEV 62
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV---- 130
F +I + +P E G+ L+ AR+RNLTYSAPLY+++ + D EV
Sbjct: 63 KFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGVEQDPVEVRIGE 122
Query: 131 -PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
PIML+S C LY S + L +LGE P D GGYFIINGSE+V+++ E ++ N V K
Sbjct: 123 LPIMLKSKVCRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDE 182
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
+ +Y +A+V S + +++ K G ++ +P + + + +
Sbjct: 183 RQERY--IAKVFSYRHG--------YRALVTVERKKDG----ILYVGIPNVPRPVKFVYV 228
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
RALG D+DI++ + D ++ ++L +LE+A I QQ YIGK A G R
Sbjct: 229 MRALGLERDKDIVDAVG---NDPEVQQILFDNLEDASDITTQQEALEYIGKLVAP-GQAR 284
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
E +K A+ ++ +LPH+G +KAYY G + +++ +LG+R EDD+DHY NKR
Sbjct: 285 EYRLKRAEYVIDNNLLPHMGVNPEDRIRKAYYLGMMALKVIELSLGKRGEDDKDHYANKR 344
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYV--------QKCVDNGKDVNLQFAIKAKTITGGL 417
L LAG LL LFR F +L D++ + +K V ++ +I+ +T +
Sbjct: 345 LRLAGDLLKDLFRVAFNQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERI 404
Query: 418 KYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHN 467
+++LATG W G R GVSQ+L+ Y ST ++ ++ P R LH
Sbjct: 405 EHALATGAW-----PGGRTGVSQLLDRTNYVSTMSHLR--RVTSPLDREQPHFEARDLHG 457
Query: 468 SQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
+ WG +CP ETPEG CGLVKNLALM IT + E+L G E
Sbjct: 458 THWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVREYLMSLGIVPIE 508
>gi|396941889|gb|AFN89662.1| RNA polymerase II, partial [Scheffersomyces spartinae]
Length = 758
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 142/246 (57%), Positives = 186/246 (75%), Gaps = 14/246 (5%)
Query: 286 FFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHI 341
F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ + ET+KA++ G++
Sbjct: 1 FVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQDEGFETRKAFFLGYM 59
Query: 342 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD 401
++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +Y+Q+CV+N K
Sbjct: 60 VNRLLLCALERKEADDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENDKV 119
Query: 402 VNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------ 454
NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 120 FNLTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 179
Query: 455 --LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEW 512
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ + PIL FLEEW
Sbjct: 180 IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPILYFLEEW 239
Query: 513 GTENFE 518
G E E
Sbjct: 240 GMEPLE 245
>gi|396941835|gb|AFN89635.1| RNA polymerase II, partial [Kluyveromyces marxianus]
Length = 765
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 140/246 (56%), Positives = 184/246 (74%), Gaps = 13/246 (5%)
Query: 286 FFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHI 341
F IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ + E++KA++ G++
Sbjct: 1 FVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYM 60
Query: 342 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD 401
I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLFRKLT D+ ++Q+ V+ KD
Sbjct: 61 INRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKD 120
Query: 402 VNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------ 454
NL+ A+KA TIT GLKY+LATGNWG Q + +RAGVSQVLN TY+ST ++
Sbjct: 121 FNLKLAVKATTITAGLKYALATGNWGEQKKSMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 180
Query: 455 --LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEW 512
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ PI+ FL EW
Sbjct: 181 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLPIITFLNEW 240
Query: 513 GTENFE 518
G E E
Sbjct: 241 GMEPLE 246
>gi|18977936|ref|NP_579293.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus DSM
3638]
gi|397652057|ref|YP_006492638.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus COM1]
gi|18893706|gb|AAL81688.1| DNA-directed RNA polymerase subunit b [Pyrococcus furiosus DSM
3638]
gi|393189648|gb|AFN04346.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus COM1]
Length = 1117
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 188/531 (35%), Positives = 283/531 (53%), Gaps = 57/531 (10%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
+ T ++ W V+ +Y++EKGLVRQ LDS++ F + +QE+V+E I +P+ P +
Sbjct: 8 DVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIERGLQEVVNEFGGI--KPDI---PDFEV 62
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV---- 130
F +I + +P E G+ L+ AR+RNLTY+APLY+++ + D EV
Sbjct: 63 KFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYAAPLYLEMIPVIKGVEQDPVEVRIGE 122
Query: 131 -PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
PIML+S C LY S + L +LGE P D GGYFIINGSE+V+++ E ++ N V K
Sbjct: 123 LPIMLKSKVCRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDE 182
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
+ KY +A+V S + +++ K G ++ +P + + + +
Sbjct: 183 RQEKY--IAKVFSYRHG--------YRALVAVERRKDG----ILYVDIPNVPKPVKFVYV 228
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
RALG D+DI+E + D ++ +++ +LE+A I QQ +IGK A G R
Sbjct: 229 MRALGLERDKDIVEAVG---NDPEVQQIMFDNLEDASDITTQQEALEFIGKLVAP-GQAR 284
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
E +K A+ ++ +LPH+G KKAYY G + +++ +LGRR EDD+DHY NKR
Sbjct: 285 EYRLKRAEYVIDNNLLPHMGVSPEDRIKKAYYLGMMALKVIELSLGRRPEDDKDHYANKR 344
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN--------LQFAIKAKTITGGL 417
L LAG LL LFR F +L D++ + K D ++ +I+ +T +
Sbjct: 345 LRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRKGDKYTFGNIHRFIRNSIRPDVLTERI 404
Query: 418 KYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHN 467
+++LATG W G R GVSQ+L+ Y ST ++ ++ P R LH
Sbjct: 405 EHALATGAW-----PGGRTGVSQLLDRTNYMSTLSHLR--RVTSPLDREQPHFEARDLHG 457
Query: 468 SQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
+ WG +CP ETPEG CGLVKNLALM IT I E+L G E
Sbjct: 458 THWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEIREYLMSLGIVPIE 508
>gi|396941817|gb|AFN89626.1| RNA polymerase II, partial [Nakaseomyces delphensis]
Length = 763
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 141/247 (57%), Positives = 183/247 (74%), Gaps = 13/247 (5%)
Query: 285 AFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGH 340
F IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ + E++KA++ G+
Sbjct: 1 GFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGY 60
Query: 341 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK 400
+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLFRKLT D+ Y+Q+ V+
Sbjct: 61 MINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQRTVEEAN 120
Query: 401 DVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY----- 454
D N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 121 DFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNT 180
Query: 455 ---LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEE 511
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ PI+ FL E
Sbjct: 181 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGADPMPIITFLSE 240
Query: 512 WGTENFE 518
WG E E
Sbjct: 241 WGMEPLE 247
>gi|396941945|gb|AFN89689.1| RNA polymerase II, partial [Magnusiomyces magnusii]
Length = 778
Score = 297 bits (761), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 140/257 (54%), Positives = 188/257 (73%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P EE +Q+++ +IG+RG+ +G+TREK ++YA++ILQKE LP++ +
Sbjct: 1 LEMLKPCXEEGXVVQDREVALDFIGRRGSAMGITREKRMRYARDILQKEXLPNITQEEGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
ET+KA++ G++IH+LLL AL R DDRDH+G KRLDLAGPLL LFR LF+KLT +
Sbjct: 61 ETRKAFFLGYMIHKLLLVALDRSDPDDRDHFGKKRLDLAGPLLAQLFRILFKKLTRXIYR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+QKCV+ KD NL A+K+ TIT GLKYSLATGNWG Q A TRAGVSQVLN T++S
Sbjct: 121 YMQKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSTRAGVSQVLNRYTFSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+A+PRQLHN+ WG +CPAETPEGQACGLVKNL+L+ +++G+
Sbjct: 181 TLSHLRRTNTPIGRDGKIARPRQLHNTHWGFVCPAETPEGQACGLVKNLSLLSGVSVGTP 240
Query: 502 AYPILEFLEEWGTENFE 518
+ PI+ FL EWG E E
Sbjct: 241 SNPIVCFLSEWGMEPLE 257
>gi|396941963|gb|AFN89698.1| RNA polymerase II, partial [Saitoella complicata]
Length = 727
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 144/257 (56%), Positives = 181/257 (70%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
++LL+P LEEA I + YIG+RG + REK ++YA +I+QKE+LPH+ T
Sbjct: 1 LDLLKPCLEEADVILEKDLALDYIGRRGNNPQMGREKRLRYAHDIMQKELLPHITTSVGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E +KA++ G++ HRLLLCAL RR +DDRDH+G KRLDLAGPLLGGLFR LF+KL+ DV
Sbjct: 61 ENRKAFFLGYMCHRLLLCALERRDQDDRDHFGKKRLDLAGPLLGGLFRMLFKKLSRDVYK 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+QKCV+ GK+ N +K TIT GLKYSLATGNWG Q R GVSQVLN T+AS
Sbjct: 121 YMQKCVETGKEFNAAAGMKTSTITQGLKYSLATGNWGDQAKGLANRVGVSQVLNRYTFAS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM YI++
Sbjct: 181 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSYISVSRP 240
Query: 502 AYPILEFLEEWGTENFE 518
+ I+E L WG E FE
Sbjct: 241 SAQIIENLNNWGIEGFE 257
>gi|396941799|gb|AFN89617.1| RNA polymerase II, partial [Ogataea glucozyma]
Length = 774
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 140/243 (57%), Positives = 179/243 (73%), Gaps = 13/243 (5%)
Query: 286 FFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHI 341
F Q+Q+ YIG+RG ++G+ RE+ I+YAK+ILQ+E LPH+ ET KAY+ G+I
Sbjct: 1 FLXQSQEVALDYIGRRGNSIGIKRERRIQYAKDILQREFLPHISQDTGFETNKAYFLGYI 60
Query: 342 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD 401
I+RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LFRKL+ D+ Y+Q+C++ G+D
Sbjct: 61 INRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYRYMQRCIERGED 120
Query: 402 VNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------ 454
N+ A+K+ TI GLKYSLATG WG Q A +RAGVSQVLN TY+ST ++
Sbjct: 121 FNIVSAVKSTTIXSGLKYSLATGXWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 180
Query: 455 --LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEW 512
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM +++GSA+ PI LEEW
Sbjct: 181 IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMACVSVGSASEPITYLLEEW 240
Query: 513 GTE 515
G E
Sbjct: 241 GLE 243
>gi|14520830|ref|NP_126305.1| DNA-directed RNA polymerase subunit B [Pyrococcus abyssi GE5]
gi|5458046|emb|CAB49536.1| rpoB DNA-directed RNA polymerase, subunit B (EC 2.7.7.6)
[Pyrococcus abyssi GE5]
gi|380741372|tpe|CCE70006.1| TPA: DNA-directed RNA polymerase subunit beta [Pyrococcus abyssi
GE5]
Length = 1117
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 189/533 (35%), Positives = 285/533 (53%), Gaps = 61/533 (11%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E T ++ W V+ +Y++EKGLVRQ LDS++ F +QE+VDE I +P+ P +
Sbjct: 8 EVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGI--KPDI---PDFEV 62
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE------ 128
F +I + +P E G+ L+ AR+RNLTYSAPLY+++ + +G + E
Sbjct: 63 KFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIP--VIRGIEQEPVEVRI 120
Query: 129 -EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
E+PIML+S C LY S L +LGE P D GGYFIINGSE+V+++ E ++ N V K
Sbjct: 121 GELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEK 180
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+ KY +A+V S + +++ K G ++ +P + + +
Sbjct: 181 DERQEKY--IAKVFSYRHG--------YRALVTVERKKDG----ILYVGIPNVPKPVKFV 226
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGV 303
+ RALG D+DI++ + D ++ ++L +LE+A I QQ YIGK A G
Sbjct: 227 YVMRALGLERDKDIVDAVG---NDPEVQQILFDNLEDASDITTQQEALEYIGKLVAP-GQ 282
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
RE +K A+ ++ +LPH+G +KAYY G + +++ +LG+R EDD+DHY N
Sbjct: 283 AREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYAN 342
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYV--------QKCVDNGKDVNLQFAIKAKTITG 415
KRL LAG LL LFR F +L D++ + +K V ++ +I+ +T
Sbjct: 343 KRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTE 402
Query: 416 GLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQL 465
++++LATG W G R GVSQ+L+ Y ST ++ ++ P R L
Sbjct: 403 RIEHALATGAW-----PGGRTGVSQLLDRTNYVSTLSHLR--RVTSPLDREQPHFEARDL 455
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
H + WG +CP ETPEG CGLVKNLALM IT + E+L G E
Sbjct: 456 HGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIE 508
>gi|333911406|ref|YP_004485139.1| DNA-directed RNA polymerase [Methanotorris igneus Kol 5]
gi|333751995|gb|AEF97074.1| DNA-directed RNA polymerase [Methanotorris igneus Kol 5]
Length = 503
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 184/522 (35%), Positives = 284/522 (54%), Gaps = 47/522 (9%)
Query: 20 EAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEI 79
E+ ++ A+F+E LV+ +DS+++F +N +Q+IVDE +E ++ G + F +I
Sbjct: 2 ESRVLVDAFFKEHSLVKHHIDSYNDFIENKLQKIVDEVGILE----TEIKGGYKIKFGKI 57
Query: 80 YLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE---------EV 130
+ KP+ E+DG + AR+R+L+YSAPLY+++T + + + E E+
Sbjct: 58 RVGKPITKEADGSVRKITPMEARIRDLSYSAPLYLEMTPIIGEGEDEREGETVEVYIGEL 117
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
P+ML S C LY S++ L ELGE P D GYFIINGSEKVL+ QE + N + K +
Sbjct: 118 PVMLGSKICHLYGKSREELIELGEDPEDPFGYFIINGSEKVLVTQEDLIPNRILCEKVER 177
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILF 250
NK VA+V S F + + G ++AT P + +P++IL
Sbjct: 178 NNKIIDVAKVFSTRHG--------FRALCTVERHPDG----LLYATFPGMPGNVPLMILM 225
Query: 251 RALGFTADEDILEHICYDFQDT-QMMELLRPSLEEAFFIQNQ---QYIGKRGATVGVTRE 306
+ALG +D DI+E I D Q++ L+ EE + +YIGKR A G ++
Sbjct: 226 KALGAESDRDIIEMISDDPDIVMQLVANLQDMREEHNVYTREDALEYIGKRVAP-GQPKD 284
Query: 307 KMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRL 366
+K A+ +L +LPHVG KK +Y G + + LG R EDD+DHY NKRL
Sbjct: 285 YRLKRAETVLCNYLLPHVGVEKEDLIKKCWYLGKMAKTAIELYLGLRVEDDKDHYANKRL 344
Query: 367 DLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNW 426
LAG L+ LFR F +L D++ +++ K+ ++Q A+++ +T +++++ATGNW
Sbjct: 345 KLAGELMEDLFRYAFSQLVKDIKYQLERQTLRNKEPSIQAAVRSDVLTERIRHAMATGNW 404
Query: 427 GQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNSQWGMMCPA 476
G R GVSQ+L+ +Y +T + ++ P R LH +QWG +CP+
Sbjct: 405 -----VGGRTGVSQLLDRTSYLATISQL--RRVVSPLSRSQPHFEARDLHATQWGKICPS 457
Query: 477 ETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
ETPEG CGLVKN ALM +T ++E L+E+G E
Sbjct: 458 ETPEGPNCGLVKNFALMCKVTTDEDDSKVIELLKEFGLNQNE 499
>gi|322510564|gb|ADX05878.1| putative DNA-directed RNA polymerase [Organic Lake phycodnavirus 1]
Length = 1164
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 186/570 (32%), Positives = 300/570 (52%), Gaps = 76/570 (13%)
Query: 14 EETTQEEAWAVISAYFEE---KGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNP 70
E + ++W+VI +YF+ + LV+ Q+DS+++F QN + + ++ + I+ + P
Sbjct: 2 EHYNETDSWSVIESYFKNTHLQQLVKHQVDSYNDFVQNQLIKTIEMFNPLIIKSPHDYLP 61
Query: 71 GQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT-KRVIK 122
+ +F + + +P + E++G + +F ARLR+ TYS+ +D+ K I+
Sbjct: 62 EYKKYRLEVEINFVNLSIYRPEIHENNGSSKLMFPSDARLRSFTYSSNFTLDMNIKYTIR 121
Query: 123 KGHDGE---------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIING 167
KG + E ++PIML S C L Q + EC D GGYFIING
Sbjct: 122 KGANLENEEFKHIHLSKIQFGKIPIMLNSCICVLKQYPHIHPDNIDECKMDPGGYFIING 181
Query: 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG 227
SEK + QEK + N V+ FK++Q NK+ + AE S+ + + P I++ + S+ SA G
Sbjct: 182 SEKTCLGQEKTADNKVFCFKQKQSNKWLWTAEFRSVPDWKCISPKQIYMMLNSKLSAYGH 241
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDF-QDTQMMELLRPSLEEAF 286
I LP ++ IP+ +LFRALG +D+ I I + ++++++E L+ S+ E
Sbjct: 242 D----ILVQLPRLKKPIPLFVLFRALGIESDKKICNIILLNSNKESKLLEYLKASIYEGA 297
Query: 287 FIQNQ----QYIGKRGATVGVTRE------KMIKYAKEILQKEMLPHVGTGDFCETK--K 334
N QYI + + K ++AK++L ++ PH C+TK K
Sbjct: 298 EYNNYEDALQYIISNVIYTPINMDKDEGHRKKTEFAKDVLSNDLFPH------CKTKEEK 351
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
Y G + +++L G + DRD Y NKR++L G LL LFR F K+ D++ V +
Sbjct: 352 IYLLGFMTKKIILAYSGIEKQTDRDSYENKRVELTGTLLNNLFRNYFNKVVKDIQKQVIR 411
Query: 395 CVDNGK------------DVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVL 442
++NG N+ +K+ TI GLK +L+TG++G + + GV+QVL
Sbjct: 412 EINNGSWKSSEDYFNIITLTNIYKIVKSTTIENGLKRALSTGDFGIKSMNTNKVGVAQVL 471
Query: 443 NCLTYASTFTYYL--------SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMV 494
N LTY ST ++ S KL +PR+LH S WG +CPAETPEGQ+ G+VKN++ M
Sbjct: 472 NRLTYLSTLSHLRRVNTPIDKSGKLVEPRKLHGSTWGFLCPAETPEGQSVGVVKNISYMT 531
Query: 495 YITIGSAAYPILEF-------LEEWGTENF 517
++ S + PI EF L+ + TE+F
Sbjct: 532 NVSTYSDSTPIYEFIKPYLYPLDHYETEDF 561
>gi|396941859|gb|AFN89647.1| RNA polymerase II, partial [Metschnikowia agaves]
Length = 771
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 141/246 (57%), Positives = 186/246 (75%), Gaps = 14/246 (5%)
Query: 286 FFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHI 341
F IQ ++ +IG+RG +G+ REK I+YAK+ILQKE+LP++ E++KA++ G++
Sbjct: 1 FVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEAGFESRKAFFLGYM 59
Query: 342 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD 401
++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +Y+Q+CV+N K+
Sbjct: 60 VNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTRDIYNYMQRCVENDKE 119
Query: 402 VNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------ 454
NL A+K++TIT GL+YSLATGNWG Q A RAGVSQVLN TY+ST ++
Sbjct: 120 FNLTLAVKSQTITDGLRYSLATGNWGEQRKAMSARAGVSQVLNRYTYSSTLSHLRRTNTP 179
Query: 455 --LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEW 512
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+++ PIL FLEEW
Sbjct: 180 IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTSSEPILYFLEEW 239
Query: 513 GTENFE 518
G E E
Sbjct: 240 GMEPLE 245
>gi|389852853|ref|YP_006355087.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. ST04]
gi|388250159|gb|AFK23012.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. ST04]
Length = 1117
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 189/533 (35%), Positives = 285/533 (53%), Gaps = 61/533 (11%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E T ++ W V+ +Y++EKGLVRQ LDS++ F + +QE+V+E I +P+ P +
Sbjct: 8 EVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIERGLQEVVNEFGGI--KPDI---PDFEV 62
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE------ 128
F +I + +P E G+ L+ AR+RNLTYSAPLY+++ + +G + E
Sbjct: 63 KFGKIRVGQPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIP--VIRGIEQEPVEVRI 120
Query: 129 -EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
E+PIML+S C LY S + L +LGE P D GGYFIINGSE+V+++ E ++ N V K
Sbjct: 121 GELPIMLKSKVCRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEK 180
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+ +Y VA+V S + +++ K G ++ +P + I +
Sbjct: 181 DERQERY--VAKVFSYRHG--------YRALVTVERKKDG----ILYVGIPNVPKPIKFV 226
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGV 303
+ RALG D DI++ + D ++ ++L +LE+A I QQ YIGK A G
Sbjct: 227 YVMRALGLERDRDIVDAVG---NDPEVQQILFDNLEDASDITTQQEALEYIGKLVAP-GQ 282
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
RE +K A+ ++ +LPH+G +KAYY G + +++ +LGRR EDD+DHY N
Sbjct: 283 AREYRLKRAEYVIDNNLLPHMGVNPEDRIRKAYYLGMMALKVIELSLGRRDEDDKDHYAN 342
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN--------LQFAIKAKTITG 415
KRL LAG LL LFR F +L D++ + K + ++ +I+ +T
Sbjct: 343 KRLRLAGDLLKDLFRVAFGQLVKDIQYQMTKTYQRKGEKYTFGNIHRFIRNSIRPDVLTE 402
Query: 416 GLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQL 465
++++LATG W G R GVSQ+L+ Y ST ++ ++ P R L
Sbjct: 403 RIEHALATGAW-----PGGRTGVSQLLDRTNYVSTLSHLR--RVTSPLDREQPHFEARDL 455
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
H + WG +CP ETPEG CGLVKNLALM IT + E+L G E
Sbjct: 456 HGTHWGRICPTETPEGPNCGLVKNLALMSQITTAVPEEEVKEYLMSLGIVPIE 508
>gi|270305050|gb|ACZ71463.1| RNA polymerase II second largest subunit [Metzgeria furcata]
Length = 162
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 140/162 (86%), Positives = 149/162 (91%), Gaps = 4/162 (2%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETK AY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKXAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLT 385
RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT
Sbjct: 121 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT 162
>gi|223478302|ref|YP_002582840.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. AM4]
gi|214033528|gb|EEB74355.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. AM4]
Length = 1122
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 186/531 (35%), Positives = 297/531 (55%), Gaps = 57/531 (10%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
+ T ++ W V+ +Y++EKGLVRQ LDS++ F ++ +QE+++E + +P+ P +
Sbjct: 10 DVTPDDLWIVMESYWKEKGLVRQHLDSYNAFIEHGLQEVINEFGGV--KPDI---PNFEV 64
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE------ 128
F +I L +P+ E+ G+ L+ AR+RNLTYSAPL++++ V G + E
Sbjct: 65 KFGKIRLGEPIFQEAQGQRRPLYPMDARIRNLTYSAPLFLELIPVV--NGIEQEPVEVRI 122
Query: 129 -EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
E+P+ML+S C LY S + L ELGE P D GGYFIINGSE+V+++ E ++ N V +
Sbjct: 123 GELPLMLKSKACRLYGLSDEELIELGEDPKDPGGYFIINGSERVIVSIEDLAPNKTLVER 182
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+ NK VA+V S + +++ S K G ++ ++P + + +
Sbjct: 183 DERQNKV--VAKVFSYRHG--------YRALITVESRKDG----ILYVSIPNVPKPVKFV 228
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGV 303
+ RALG +D++I+E I +D ++ ++L +LE+A I+ Q+ +IG R + G
Sbjct: 229 YVMRALGLLSDKEIVEAIS---EDPRIQQVLFNNLEDASDIRTQEEALDFIG-RLSLPGQ 284
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
+E ++ A+ I+ +LPH+G KAYY G + ++L ALG R EDD+DHY N
Sbjct: 285 PKEYRLRRAEHIIDNNLLPHMGVEPENRKAKAYYLGMMALKVLELALGLRGEDDKDHYAN 344
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV----NLQF----AIKAKTITG 415
KRL LAG LL LFR F +L D++ + K + N+Q +++ ++
Sbjct: 345 KRLKLAGDLLKDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSVRPDVLSE 404
Query: 416 GLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY--LSWKLAK------PRQLHN 467
++++LATG+W G R GVSQ+L+ Y ST ++ ++ L++ R LH
Sbjct: 405 RIEHALATGSW-----PGGRTGVSQLLDRTNYISTLSHLRRVTSPLSRDQPHFEARDLHG 459
Query: 468 SQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
+ WG +CP ETPEG CGLVKNLALM IT G + E+L + G E
Sbjct: 460 THWGRICPTETPEGPNCGLVKNLALMAQITTGIPEEEVREYLLKLGVVPIE 510
>gi|396941821|gb|AFN89628.1| RNA polymerase II, partial [Zygosaccharomyces rouxii]
Length = 773
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 146/257 (56%), Positives = 193/257 (75%), Gaps = 13/257 (5%)
Query: 275 MELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
+E+L+P +E+ F IQ+++ +IG+RG +G+ +EK I+YA++ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGF 60
Query: 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRS 390
E++KA++ G++I+RLLLCAL RR +DDRDH+G KRLDLAGPLL LF+TLFRKLT D+
Sbjct: 61 ESRKAFFLGYMINRLLLCALDRRDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDIFR 120
Query: 391 YVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYAS 449
Y+Q+ V+ KD N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+S
Sbjct: 121 YMQRTVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 450 TFTYY--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA 501
T ++ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240
Query: 502 AYPILEFLEEWGTENFE 518
PI+ FL EWG E E
Sbjct: 241 PMPIITFLSEWGMEPLE 257
>gi|337283877|ref|YP_004623351.1| DNA-directed RNA polymerase subunit beta [Pyrococcus yayanosii CH1]
gi|334899811|gb|AEH24079.1| DNA-directed RNA polymerase subunit beta [Pyrococcus yayanosii CH1]
Length = 1118
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 185/528 (35%), Positives = 286/528 (54%), Gaps = 61/528 (11%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E T ++ W V+ +Y++EKGLVRQ LDS++ F + +QE+V+E + +P+ P +
Sbjct: 8 EVTPDDLWVVMESYWQEKGLVRQHLDSYNAFIERGLQEVVNEFGGV--KPDI---PDFEV 62
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE------ 128
F I + +P E+ G+ L+ AR+RNLTYSAPLY+++ V KG + E
Sbjct: 63 KFGRIRVGEPEFQEAHGQRKPLYPMDARIRNLTYSAPLYLEMIPVV--KGIEQEPVEVRI 120
Query: 129 -EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
E+PIML+S C LY S + L +LGE P D GGYFIINGSE+V+++ E ++ N V K
Sbjct: 121 GELPIMLKSKVCRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEK 180
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+ +Y +A+ S + +++ K G ++ ++P + + +
Sbjct: 181 DERQERY--LAKCFSYRHG--------YRALITVERRKDG----ILYVSIPNVPKPVKFV 226
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ----QYIGKRGATVGV 303
+ RALG D+DI++ + D ++ ++L +LE+A IQ Q + IG+ A G
Sbjct: 227 YVMRALGLEKDKDIVDAVG---NDPEVQQVLFDNLEDASDIQTQMEALELIGRLVAP-GQ 282
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
RE +K A+ ++ +LPH+G +KAYY G + +++ +LGRR EDD+DHY N
Sbjct: 283 AREYRLKRAEYVIDNNLLPHMGVNPEDRIRKAYYLGMMALKVIELSLGRRDEDDKDHYAN 342
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN--------LQFAIKAKTITG 415
KRL LAG LL LFR F +L D++ + K + ++ +I+ +T
Sbjct: 343 KRLRLAGDLLKDLFRVAFAQLVKDIQYQMTKTYQRKGEKYTFGNIHRFIRNSIRPDVLTE 402
Query: 416 GLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQL 465
+++SLATG W G R GVSQ+L+ Y ST ++ ++ P R L
Sbjct: 403 RIEHSLATGAW-----PGGRTGVSQLLDRTNYMSTLSHLR--RVTSPLDREQPHFEARDL 455
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
H + WG +CP ETPEG CGLVKNLALM IT + E+L + G
Sbjct: 456 HGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEKEVREYLMKLG 503
>gi|396941845|gb|AFN89640.1| RNA polymerase II, partial [Saturnispora dispora]
Length = 764
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 138/241 (57%), Positives = 179/241 (74%), Gaps = 13/241 (5%)
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQ+Q+ +IG+RG G+ R++ I++AK+ILQ+E LPH+ ET KAY+ G++I+
Sbjct: 1 IQSQEVALDFIGRRGNATGIKRDRRIQFAKDILQREFLPHISQDSGHETNKAYFLGYVIN 60
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
RLLLCAL R+ +DDRDH+G KRLDLAGPLL LFR LFRKL+ D+ Y+Q+C++ G+D N
Sbjct: 61 RLLLCALERKEQDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIFRYMQRCIERGEDFN 120
Query: 404 LQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY-------- 454
+ A+K+ TIT GLKYSLATGNWG Q A ++AGVSQVLN TYAST ++
Sbjct: 121 IVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYASTLSHLRRTNTPIG 180
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ + PI LEEWG
Sbjct: 181 RDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTQSEPITYLLEEWGL 240
Query: 515 E 515
E
Sbjct: 241 E 241
>gi|401018|sp|P31814.1|RPOB_THECE RecName: Full=DNA-directed RNA polymerase subunit B
gi|48140|emb|CAA47722.1| Subunit B of DNA-dependent RNA polymerase [Thermococcus celer]
Length = 1122
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 184/529 (34%), Positives = 287/529 (54%), Gaps = 53/529 (10%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
+ T ++ W V+ AY++EKGLVRQ LDS++ F + MQE++DE + +P+ P +
Sbjct: 10 DVTPDDLWLVMEAYWKEKGLVRQHLDSYNAFIDHGMQEVIDEFGGV--KPDI---PDFEV 64
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV---- 130
F ++ L +P E+ G+ L+ AR+RNLTYSAP+Y+++ V + EV
Sbjct: 65 KFGKVRLGEPEFQEAQGQRKPLYPMDARIRNLTYSAPIYLELIPVVNGVSQEAVEVRIGE 124
Query: 131 -PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
PIML+S C LY S + L +LGE P D GGYFI+NGSE+V+++ E ++ N V +
Sbjct: 125 LPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIVNGSERVIVSIEDLAPNKTLVERDE 184
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
+ N+ +A+ S + +++ K G ++ LP + + + +
Sbjct: 185 RQNRI--IAKCFSYRHG--------YRALITVERRKDG----ILYVKLPNVPRPVKFVYV 230
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
RALG +D +I+E + D ++ +L +LE+A + Q+ YIGK + G +
Sbjct: 231 MRALGLLSDREIVEAVS---DDPRIQHVLFDNLEDASDVTTQEEALDYIGKL-SLPGQPK 286
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
E ++ A+ I+ +LPH+G + KAYY G + R+L +LG R EDD+DHY NKR
Sbjct: 287 EYRLRRAQNIIDNNLLPHMGVEEKDRKAKAYYLGMMALRVLELSLGLRGEDDKDHYANKR 346
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV----NLQF----AIKAKTITGGL 417
L LAG LL LFR F +L D++ + K + N+Q +I+ ++ +
Sbjct: 347 LKLAGDLLMDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERI 406
Query: 418 KYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY--LSWKLAK------PRQLHNSQ 469
+++LATG+W G R GVSQ+L+ Y ST ++ ++ L++ R LH +
Sbjct: 407 EHALATGSW-----PGGRTGVSQLLDRTNYISTLSHLRRVTSPLSREQPHFEARDLHGTH 461
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
WG +CP ETPEG CGLVKNLALM IT G + E+LE G E
Sbjct: 462 WGRICPTETPEGPNCGLVKNLALMSQITTGVPEEEVREYLERLGVVPIE 510
>gi|390960609|ref|YP_006424443.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. CL1]
gi|390518917|gb|AFL94649.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. CL1]
Length = 1122
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 186/531 (35%), Positives = 291/531 (54%), Gaps = 57/531 (10%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
+ T ++ W V+ AY++E+GLVRQ LDS++ F + MQ+++DE + +P+ P +
Sbjct: 10 DVTPDDLWLVMEAYWKERGLVRQHLDSYNAFIDHGMQQVIDEFGGL--KPDI---PDFEV 64
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE------ 128
F +I L +P E+ G+ L+ AR+RNLTYSAPLY+++ + KG + E
Sbjct: 65 KFGKIRLGEPEFQEAQGQRKPLYPMDARIRNLTYSAPLYLELIP--VIKGIEQEPVEVRI 122
Query: 129 -EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
E+PIML+S C LY S + L +LGE P D GGYFIINGSE+V+++ E ++ N V +
Sbjct: 123 GELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDLAPNKTLVER 182
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+ N+ +A+V S + +++ K G ++ +P + + +
Sbjct: 183 DERQNRI--IAKVFSYRHG--------YRALITVERRKDG----ILYVNIPNVPRPVKFV 228
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGV 303
+ RALG +D++I+E + D ++ ++L +LE+A I Q+ YIGK + G
Sbjct: 229 YVMRALGLLSDKEIVEAVS---DDPRIQQVLFDNLEDASDITTQEEALDYIGKL-SLPGQ 284
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
RE ++ A+ I+ +LPH+G KAYY G + ++L +LG R EDD+DHY N
Sbjct: 285 PREYRLRRAEHIIDNNLLPHMGVEPERRRAKAYYLGMMALKVLELSLGLRGEDDKDHYAN 344
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV----NLQF----AIKAKTITG 415
KRL LAG LL LFR F +L D++ + K + N+Q +I+ ++
Sbjct: 345 KRLKLAGDLLRDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSE 404
Query: 416 GLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY--LSWKLAK------PRQLHN 467
++++LATG W G R GVSQ+L+ Y ST ++ ++ L++ R LH
Sbjct: 405 RIEHALATGAW-----PGGRTGVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEARDLHG 459
Query: 468 SQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
+ WG +CP ETPEG CGLVKNLALM IT G + E+L + G E
Sbjct: 460 THWGRICPTETPEGPNCGLVKNLALMAQITTGIPEKEVREYLSKLGVVPIE 510
>gi|409095097|ref|ZP_11215121.1| DNA-directed RNA polymerase subunit B [Thermococcus zilligii AN1]
Length = 1120
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 185/533 (34%), Positives = 288/533 (54%), Gaps = 61/533 (11%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E T ++ W V+ +Y++EKGLVRQ LDS++ F +QE++DE + +P+ P +
Sbjct: 8 EVTPDDLWLVMESYWKEKGLVRQHLDSYNAFVDYGLQEVIDEFGGV--KPDI---PNLEV 62
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE------ 128
F +I + +P+ E+ G+ L+ AR+RNLTYSAPL++++ V G + E
Sbjct: 63 KFGKIRVGEPVFQEAQGQRRPLYPMDARIRNLTYSAPLFLELIPVV--NGIEQEPVEARI 120
Query: 129 -EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
E+PIML+S C L+ S L +LGE P D GGYFIINGSE+V+++ E ++ N V
Sbjct: 121 GELPIMLKSKICRLHGLSDGELVKLGEDPKDPGGYFIINGSERVIVSIEDLAPNRTLV-- 178
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+R + +A+V S + +++ K G ++ T+P + + +
Sbjct: 179 ERDERQERVIAKVFSYRHG--------YRALITVERRKDG----ILYVTIPNVSKPVKFV 226
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGV 303
+ RALG +D +I+E + D ++ ++L +LE+A I+ Q+ YIGK + G
Sbjct: 227 YVMRALGLLSDREIVEAVS---DDPRIQQILLDNLEDASDIRTQEDALDYIGKL-SLPGQ 282
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
+E ++ A+ I+ +LPH+G G KAYY G + ++L +LG R EDD+DHY N
Sbjct: 283 PKEYRLRRAEHIIDNNLLPHMGVGPENRKAKAYYLGMMALKVLELSLGLRGEDDKDHYAN 342
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV----NLQF----AIKAKTITG 415
KRL LAG LL LFR F +L D+ + K + N+Q +I+ ++
Sbjct: 343 KRLKLAGDLLKDLFRVAFGQLVKDMEYQMTKTYQRKGERYTFQNIQRFVRNSIRPDVLSE 402
Query: 416 GLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQL 465
++++LATG+W G R GVSQ+L+ Y ST ++ ++ P R L
Sbjct: 403 RIEHALATGSW-----PGGRTGVSQLLDRTNYMSTLSHL--RRVTSPLDREQPHFEARDL 455
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
H + WG +CP ETPEG CGLVKNLALM IT G + +LE+ G E
Sbjct: 456 HGTHWGRICPTETPEGPNCGLVKNLALMAQITTGLPEEKVRVYLEKLGIVPIE 508
>gi|270304968|gb|ACZ71422.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
Length = 162
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 139/162 (85%), Positives = 148/162 (91%), Gaps = 4/162 (2%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLT 385
RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGG R LFRKLT
Sbjct: 121 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGXXRMLFRKLT 162
>gi|57641018|ref|YP_183496.1| DNA-directed RNA polymerase subunit B [Thermococcus kodakarensis
KOD1]
gi|57159342|dbj|BAD85272.1| DNA-directed RNA polymerase, subunit B [Thermococcus kodakarensis
KOD1]
Length = 1123
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 189/533 (35%), Positives = 290/533 (54%), Gaps = 57/533 (10%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ 72
E T +E W V+ +Y++EKG VRQ LDS++ F + +Q++V+E E+ P+ P
Sbjct: 9 EPTLTPDELWLVMESYWKEKGFVRQHLDSYNAFIDHGLQDVVNEFG--EVVPDI---PNF 63
Query: 73 QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE---- 128
+ F +I + +P E+ G+ L+ AR+RNLTYSAPLY+++ V G + E
Sbjct: 64 KVKFGKIRIGQPEFQEAQGQRRPLYPMDARIRNLTYSAPLYLEMIPVV--NGIEQEPVEV 121
Query: 129 ---EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYV 185
E+PIML+S C LY S + L +LGE P D GGYFIINGSE+V+++ E ++ N V
Sbjct: 122 RIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDLAPNKTLV 181
Query: 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIP 245
+ + NK VA+V S + +++ K G ++ T+P + +
Sbjct: 182 ERDERQNKV--VAKVFSYRHG--------YRALITVERKKDG----ILYVTIPNVPKPVK 227
Query: 246 IIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATV 301
+ + RALG D++I+E + D ++ ++L +LE+A I Q+ YIG R A
Sbjct: 228 FVYVMRALGLLTDKEIVEAVS---DDPRIQQVLFDNLEDASDISTQEEALDYIG-RLALP 283
Query: 302 GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHY 361
G +E ++ A+ I+ +LPH+G KAYY G + ++L +LG R EDD+DHY
Sbjct: 284 GQPKEYRLRRAEHIIDNNLLPHMGVDPENRRAKAYYLGMMALKVLELSLGLRGEDDKDHY 343
Query: 362 GNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV----NLQF----AIKAKTI 413
NKRL LAG LL LFR F +L D++ + K + N+Q +I+ +
Sbjct: 344 ANKRLKLAGDLLKDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVL 403
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY--LSWKLAK------PRQL 465
+ ++++LATG+W G R GVSQ+L+ Y ST ++ ++ L++ R L
Sbjct: 404 SERIEHALATGSW-----PGGRTGVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEARDL 458
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
H + WG +CP ETPEG CGLVKNLALM IT G + E+L + G E
Sbjct: 459 HGTHWGRICPTETPEGPNCGLVKNLALMSQITTGIPEREVREYLMKMGVVPIE 511
>gi|375083053|ref|ZP_09730091.1| DNA-directed RNA polymerase subunit B [Thermococcus litoralis DSM
5473]
gi|374742289|gb|EHR78689.1| DNA-directed RNA polymerase subunit B [Thermococcus litoralis DSM
5473]
Length = 1118
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 183/531 (34%), Positives = 293/531 (55%), Gaps = 57/531 (10%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E T ++ W V+ +Y++EKGLVRQ LDS++ F + MQE+V+E + +P+ P +
Sbjct: 8 EVTPDDLWEVMKSYWDEKGLVRQHLDSYNAFIDHGMQEVVNEFGGV--KPDI---PDFEV 62
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE------ 128
F I L +P E+ G+ L+ AR+RNLTYSAP+++++ V KG + E
Sbjct: 63 KFGRIRLGEPEFQEAHGQRKPLYPMDARIRNLTYSAPIFLEMIPVV--KGIEQEPVEVRI 120
Query: 129 -EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
E+P+ML+S C LY S + L GE P D GGYFIINGSE+V+++ E ++ N V
Sbjct: 121 GELPVMLKSKICRLYGLSDEELIAHGEDPKDPGGYFIINGSERVIVSIEDLAPNRTLVEI 180
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+ N+Y +A+ S + +++ K G ++ ++P + I +
Sbjct: 181 DERQNRY--IAKCFSYRHG--------YRALITVERRKDG----LLYVSIPNVPGVIKFV 226
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGV 303
+ RALG +D++I++ + + ++ ++L +LE+A IQ Q+ YIGK+ A G
Sbjct: 227 YVMRALGLESDKEIVDAVS---NNPEIQQVLFDNLEDASDIQTQEEALDYIGKK-AMPGQ 282
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
+E ++ A+ I+ +LPH+G +KAYY G + +++ +LG R EDD+DHY N
Sbjct: 283 PKEYRLRRAQSIIDNNLLPHMGVSPEDRIRKAYYLGMMALKVIELSLGLRGEDDKDHYAN 342
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNG------KDVN--LQFAIKAKTITG 415
KRL LAG LL LFR F +L D++ + K +D+ ++ +++ +T
Sbjct: 343 KRLKLAGDLLRDLFRVAFGQLVKDMQYQLTKTYQRKGEKYTFQDIQRFVRNSVRPDVLTE 402
Query: 416 GLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY--LSWKLAK------PRQLHN 467
++++LATG W G R GVSQ+L+ + ST ++ ++ L++ R LH
Sbjct: 403 RIEHALATGAW-----PGGRTGVSQLLDRTNFMSTLSHLRRVTSPLSREQPHFEARDLHG 457
Query: 468 SQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
+ WG +CP ETPEG CGLVKNLALM IT +LE+LE G + E
Sbjct: 458 THWGRICPTETPEGPNCGLVKNLALMSQITTAIPEEEVLEYLESLGIVHIE 508
>gi|240103983|ref|YP_002960292.1| DNA-directed RNA polymerase subunit B [Thermococcus gammatolerans
EJ3]
gi|239911537|gb|ACS34428.1| DNA-directed RNA polymerase subunit B (rpoB) [Thermococcus
gammatolerans EJ3]
Length = 1122
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 184/531 (34%), Positives = 296/531 (55%), Gaps = 57/531 (10%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
+ T ++ W V+ +Y++EKGLVRQ LDS++ F ++ +QE+++E + +P+ P +
Sbjct: 10 DVTPDDLWIVMESYWKEKGLVRQHLDSYNAFIEHGLQEVINEFGGV--KPDI---PNFEV 64
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE------ 128
F +I L +P+ E+ G+ L+ AR+RNLTYSAPL++++ V G + E
Sbjct: 65 KFGKIRLGEPIFQEAQGQRRPLYPMDARIRNLTYSAPLFLELIPVV--NGIEQEPVEVRI 122
Query: 129 -EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
E+P+ML+S C LY S + L ELGE P D GGYFIINGSE+V+++ E ++ N V K
Sbjct: 123 GELPLMLKSKACRLYGLSDEELIELGEDPKDPGGYFIINGSERVIVSIEDLAPNKTLVEK 182
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+ K VA+V S + +++ S K G ++ ++P + + +
Sbjct: 183 DERQKKV--VAKVFSYRHG--------YRALITVESRKDG----ILYVSIPNVPKPVKFV 228
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGV 303
+ RALG +D++I+E I +D ++ ++L +LE+A I+ Q+ +IG R + G
Sbjct: 229 YVMRALGLLSDKEIVEAIS---EDPRIQQVLFNNLEDASDIRTQEEALDFIG-RLSLPGQ 284
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
+E ++ A+ I+ +LPH+G KAYY G + ++L +LG R EDD+DHY N
Sbjct: 285 PKEYRLRRAEHIIDNNLLPHMGVEPENRKAKAYYLGMMALKVLELSLGLRGEDDKDHYAN 344
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV----NLQF----AIKAKTITG 415
KRL LAG LL LFR F +L D++ + K + N+Q +++ ++
Sbjct: 345 KRLKLAGDLLKDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSVRPDVLSE 404
Query: 416 GLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY--LSWKLAK------PRQLHN 467
++++LATG+W G R GVSQ+L+ Y ST ++ ++ L++ R LH
Sbjct: 405 RIEHALATGSW-----PGGRTGVSQLLDRTNYISTLSHLRRVTSPLSREQPHFEARDLHG 459
Query: 468 SQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
+ WG +CP ETPEG CGLVKNLALM IT G + E++ + G E
Sbjct: 460 THWGRICPTETPEGPNCGLVKNLALMSQITTGIPEEEVKEYILKLGVVPIE 510
>gi|322511148|gb|ADX06461.1| putative DNA directed RNA polymerase II [Organic Lake phycodnavirus
2]
Length = 1162
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 177/554 (31%), Positives = 290/554 (52%), Gaps = 69/554 (12%)
Query: 18 QEEAWAVISAYFEE---KGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
+ ++W VI +YF+ LV+ Q+DS+++F QN M + +D + ++ + P ++
Sbjct: 4 ESDSWNVIESYFKHIHLHQLVKHQVDSYNDFIQNQMMKTIDMFNPLVVKSPHDYFPEYKT 63
Query: 75 -------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-TKRVIKKGHD 126
F + + +P + E++G T +F ARLRN TYS+ + +D+ K +I+ G
Sbjct: 64 YRLEVEIVFENLSIYRPEIHENNGSTKLMFPSDARLRNFTYSSNITLDMKIKYIIRNGER 123
Query: 127 GE---------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKV 171
E ++PIML S C L Q + EC D GGYFIINGSEK
Sbjct: 124 LENEEYKYIHLSKIQFGKIPIMLNSCICVLKQYPNIHPDNIDECKMDPGGYFIINGSEKT 183
Query: 172 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ 231
+ QEK + N ++ FK++ NK+ + AE S+ + + P I++ + S+ S G
Sbjct: 184 CLGQEKPADNKIFCFKQKPGNKWLWTAEYRSVPDWKCISPKQIYMMVHSKLSC----YGH 239
Query: 232 YIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQ-DTQMMELLRPSLEEAFFIQN 290
I LP ++ IP+ +LFRALG +D+ I + D + +T +++ L+ S+ E N
Sbjct: 240 EILVQLPRLKKPIPLFVLFRALGVESDKQICSLVVLDIEKETSILDYLKASIYEGTSYNN 299
Query: 291 Q----QYIGKRGATVGVT------REKMIKYAKEILQKEMLPHVGTGDFCETK--KAYYF 338
+YI + +K ++A ++L ++ PH C+TK K Y
Sbjct: 300 YEDSLEYIISNVIYTPINMDKDEGHKKKTEFALDVLSNDLFPH------CKTKEEKVYLL 353
Query: 339 GHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN 398
G + ++L+ C G + +RD Y NKR++L G LL LFR F K+ D++ V + ++N
Sbjct: 354 GFMTNKLIKCFCGMEQQTNRDSYENKRVELTGTLLNNLFRNYFNKVVKDIQKQVIREINN 413
Query: 399 GK------------DVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLT 446
G N+ +K+ TI G+K +L+TG++G + + GV+QVLN LT
Sbjct: 414 GSWKSSEDYSNIITLTNIYKIVKSTTIENGIKRALSTGDFGIKSMNTNKVGVAQVLNRLT 473
Query: 447 YASTFTYYL--------SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITI 498
Y ST ++ S KL +PR+LH S WG +CPAETPEGQ+ G+VKNL+ M ++
Sbjct: 474 YLSTLSHLRRVNTPIDKSGKLVEPRKLHGSTWGFLCPAETPEGQSVGVVKNLSYMTNVST 533
Query: 499 GSAAYPILEFLEEW 512
S + PI E+++ +
Sbjct: 534 YSDSTPIYEYIQPY 547
>gi|374635616|ref|ZP_09707211.1| DNA-directed RNA polymerase [Methanotorris formicicus Mc-S-70]
gi|373561682|gb|EHP87911.1| DNA-directed RNA polymerase [Methanotorris formicicus Mc-S-70]
Length = 515
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 181/522 (34%), Positives = 280/522 (53%), Gaps = 47/522 (9%)
Query: 20 EAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEI 79
E+ ++ A+F+E LV+ +DS+++F +N +Q+IVDE +E ++ G + F ++
Sbjct: 14 ESRILVDAFFKEHSLVKHHIDSYNDFIENKLQKIVDEVGILE----TEIKGGYKIKFGKV 69
Query: 80 YLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE---------EV 130
+ KP+ E+DG + AR+R+L+YSAPLY+++T + + + E E+
Sbjct: 70 RVGKPITKEADGSVRKITPMEARIRDLSYSAPLYLEMTPIIEEGEDEREGETVEVYIGEL 129
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
P+ML S C LY S+ L ELGE P D GYFIINGSEKVL+ QE + N + K +
Sbjct: 130 PVMLGSKICHLYGKSKGELIELGEDPEDPFGYFIINGSEKVLVTQEDLIPNRILCEKVER 189
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILF 250
NK VA+V S + + + S G ++AT P + IP++IL
Sbjct: 190 NNKIIDVAKVFSTRHG-----------FRALCTVERHSDG-LLYATFPGMPGNIPLMILM 237
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTRE 306
+ALG +D DI+E I D + + E + ++ YIGKR A G ++
Sbjct: 238 KALGAESDRDIIEMISDDPDVVMQLVANLQDMREGHNVYTKEDALEYIGKRVAP-GQPKD 296
Query: 307 KMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRL 366
+K A+ IL +LPHVG KK +Y G + + LG R E D+DHY NKRL
Sbjct: 297 YRLKRAETILCNYLLPHVGIEKEDLIKKCWYLGKMAKNAIELYLGLRVEGDKDHYANKRL 356
Query: 367 DLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNW 426
LAG L+ LFR F +L D++ +++ K+ ++Q A+++ +T +++++ATGNW
Sbjct: 357 KLAGELMEDLFRYAFSQLVKDIKYQLERQTLRKKEPSIQAAVRSDVLTERIRHAMATGNW 416
Query: 427 GQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNSQWGMMCPA 476
G R GVSQ+L+ +Y +T + ++ P R LH +QWG +CP+
Sbjct: 417 -----VGGRTGVSQLLDRTSYLATVSQL--RRVVSPLSRSQPHFEARDLHATQWGKICPS 469
Query: 477 ETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
ETPEG CGLVKN ALM +T ++E L+E+G E
Sbjct: 470 ETPEGPNCGLVKNFALMCKVTTDEDDGKVIELLKEFGLNQNE 511
>gi|304315184|ref|YP_003850331.1| DNA-directed RNA polymerase, subunit B'' [Methanothermobacter
marburgensis str. Marburg]
gi|302588643|gb|ADL59018.1| DNA-directed RNA polymerase, subunit B'' [Methanothermobacter
marburgensis str. Marburg]
Length = 514
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 174/536 (32%), Positives = 287/536 (53%), Gaps = 60/536 (11%)
Query: 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFA 77
++ AW ++ A+F++ LV + S+++F N +QEI+D S IE+ + +
Sbjct: 2 KKSAWGLVDAFFDKYDLVDHHIHSYNDFVSNRIQEIIDTSEPIEL-----EQGKYRVETG 56
Query: 78 EIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE-------- 129
++ + KP + E+DG + ++ ARLRNLTYSA + +++ R+I +G E
Sbjct: 57 KVSIEKPFIKEADGSKSKIYPTEARLRNLTYSAHMSLEM--RLINEGGPETEFEKVYIGE 114
Query: 130 VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
+P+ML+S C L+ S+ L E GE P D GGYFI+NGSE+ ++ E+++ N + + +
Sbjct: 115 LPVMLKSEICHLHGLSRNELIEKGEDPADPGGYFIVNGSERSIVTMEEIAPNKIILERIG 174
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
+ ++ A V S+ F +S K SG ++ + PY+ E+P++IL
Sbjct: 175 EEDENRARAIVTSIRSG--------FRARISLEYRKPRKSGVFLRISFPYVPGELPLVIL 226
Query: 250 FRALGFTADEDILEHICYDFQ-------DTQM-----------MELLRPSLEEAFFIQNQ 291
RALG D+DI+ I DF D Q+ ME L + +++
Sbjct: 227 LRALGLATDQDIITSISDDFNYQMIAADDIQVSLDKLNLKKDEMEKLDEEERREYLVRSA 286
Query: 292 -QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCAL 350
+YIG R A G+T + IK A++++ + +LPH+GT +KA Y + LL
Sbjct: 287 IRYIGNRVAK-GMTEDYRIKRAEDVIDRYLLPHIGTEPDKRLEKAIYLAEMTEMLLQVIS 345
Query: 351 GRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKA 410
G R D+DHY NKRL ++G L+ L R F L+ D+ +++ + GK+ +++ A+++
Sbjct: 346 GERKPHDKDHYTNKRLRVSGDLMEDLLRVAFTSLSRDMSYQLERSLARGKEPSVKQAVRS 405
Query: 411 KTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP-------- 462
+T LK+++ATGNW G RAGVSQ+L+ +Y T ++ ++ P
Sbjct: 406 DVLTENLKHAIATGNW-----VGGRAGVSQLLDRTSYMGTLSHM--RRVVSPLSRSQPHF 458
Query: 463 --RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
R LH +Q+G +CP ETPEG CGLVKNLAL+ I+ GS + E +++ G N
Sbjct: 459 EARDLHPTQFGKICPNETPEGPNCGLVKNLALLAKISEGSDGREVEEVIKKMGVLN 514
>gi|124028419|ref|YP_001013739.1| DNA-directed RNA polymerase subunit B [Hyperthermus butylicus DSM
5456]
gi|123979113|gb|ABM81394.1| DNA-directed RNA polymerase subunit B [Hyperthermus butylicus DSM
5456]
Length = 1138
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 183/530 (34%), Positives = 283/530 (53%), Gaps = 57/530 (10%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T ++ W V+ A+ EE GLV+Q +DS++ F + ++EIV E I P ++ +
Sbjct: 8 TMDDRWLVMKAFIEEYGLVKQHIDSYNRFIEKELKEIVKEFGTIST-PRREY----EVRI 62
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKG--HDGEEV---- 130
++ L +P++ ESDG + R+R+LTY+AP+ V +++ G + EE+
Sbjct: 63 VDVELGEPIVIESDGSEHPVTPMECRIRDLTYAAPIKAKVV--IVENGIEREAEEIILGF 120
Query: 131 -PIMLRSSYCTL---------YQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMST 180
P+MLRS L ++ ++ L E GE P D GGYFIINGSE+V++ QE +
Sbjct: 121 LPVMLRSKADPLARCMYEGKSWKECEQKLIEAGEDPRDPGGYFIINGSERVIVIQEDQAL 180
Query: 181 NHVYVFKKRQPNKYA-YVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPY 239
N + V K R A Y A+V S A + R + K G+ +H ++
Sbjct: 181 NRILVGKARAGTASALYTAKVIS-AHAGVRYQVIL-------DYHKDGT----LHVSMSR 228
Query: 240 IRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIG 295
++IP +IL RALG +D DI+ + D Q+ ++L PSLE+A I + Y+G
Sbjct: 229 ALSKIPFVILMRALGLESDRDIVLAVS---PDPQIQQMLIPSLEQARAINTVEDALDYVG 285
Query: 296 KR-GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
R + RE+ I+ A+ IL + PH+GT +KA + G + +LL GRR
Sbjct: 286 SRFREGLAKPREQRIRVAERILDTILFPHIGTSPKDRIRKALFLGQMAAKLLEYVAGRRK 345
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTIT 414
EDD+DHY NKR+ LAG L+ +FR R L D+R ++K G+ ++L+ I++ IT
Sbjct: 346 EDDKDHYANKRVLLAGDLIAMVFRIAMRALAYDIRQQLEKLRARGRHISLRMIIRSDIIT 405
Query: 415 GGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY--LSWKLAK------PRQLH 466
L+ +LATGNW G R GVSQ+L+ + S ++ + +L++ R +H
Sbjct: 406 NRLREALATGNW-----PGQRTGVSQILDRTNWLSMLSHLRRVVSQLSRTQPHFEARDVH 460
Query: 467 NSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
+QWG +CP ETPEG CGLVKNLALM Y++ G + + L G +
Sbjct: 461 GTQWGRICPFETPEGPNCGLVKNLALMAYVSAGVDDKDVEKLLYSMGVRD 510
>gi|341581876|ref|YP_004762368.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. 4557]
gi|340809534|gb|AEK72691.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. 4557]
Length = 1122
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 183/531 (34%), Positives = 292/531 (54%), Gaps = 57/531 (10%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
+ T ++ W V+ AY++E+GLVRQ LDS++ F ++ MQ ++ E + +P+ P +
Sbjct: 10 DVTPDDLWLVMDAYWKERGLVRQHLDSYNAFIESGMQRVIYEFGGL--KPDI---PDFEV 64
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE------ 128
F +I L +P E+ G+ L+ AR+RNLTYSAPLY+++ + KG + E
Sbjct: 65 KFGKIRLGEPEFQEAQGQRKPLYPMDARIRNLTYSAPLYLELIP--VIKGIEQEAVEVRI 122
Query: 129 -EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
E+PIML+S C LY S + L +LGE P D GGYFIINGSE+V+++ E ++ N V +
Sbjct: 123 GELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDLAPNKTLVER 182
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+ N+ +A+V S + +++ K G ++ +P + + +
Sbjct: 183 DERQNRI--IAKVFSYRHG--------YRALITVERRKDG----ILYVNIPNVPRPVKFV 228
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGV 303
+ RALG +D++I+E + D ++ ++L +LE+A + NQ+ YIGK + G
Sbjct: 229 YVMRALGLLSDKEIVEAVS---DDPRIQQVLFDNLEDASDVMNQEDALDYIGKL-SLPGQ 284
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
+E ++ A+ I+ +LPH+G KAYY G + ++L +LG R EDD+DHY N
Sbjct: 285 PKEYRLRRAEHIIDNNLLPHMGVEPERRKAKAYYLGMMALKVLELSLGLRGEDDKDHYAN 344
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV----NLQF----AIKAKTITG 415
KRL LAG LL LFR F +L D++ + K + N+Q +I+ ++
Sbjct: 345 KRLKLAGDLLRDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSE 404
Query: 416 GLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY--LSWKLAK------PRQLHN 467
++++LATG W G R GVSQ+L+ Y ST ++ ++ L++ R LH
Sbjct: 405 RIEHALATGAW-----PGGRTGVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEARDLHG 459
Query: 468 SQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
+ WG +CP ETPEG CGLVKNL+LM IT G + E+L + G + E
Sbjct: 460 THWGRICPTETPEGPNCGLVKNLSLMSQITTGIPEEEVREYLNKLGVVSIE 510
>gi|426344421|ref|XP_004038768.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Gorilla
gorilla gorilla]
Length = 1097
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 152/272 (55%), Positives = 192/272 (70%), Gaps = 20/272 (7%)
Query: 26 SAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD-------FAE 78
S+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I+++ E+QH G+ + F +
Sbjct: 18 SSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQ 77
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE--------- 129
IYLSKP E DG + + ARLRNLTYSAPLYVD+TK VIK+G + +
Sbjct: 78 IYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIG 137
Query: 130 -VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKK 188
+PIMLRS+YC L + + L EL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K
Sbjct: 138 KIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAK 197
Query: 189 RQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR--TSAKGGSSGQYIHATLPYIRTEIPI 246
+ +KYAY E S E+ +RP STI+V ML+R AK + GQ I ATLPYI+ E+PI
Sbjct: 198 KD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPI 256
Query: 247 IILFRALGFTADEDILEHICYDFQDTQMMELL 278
II+FRALGF +D DILEHI YDF+D +MME++
Sbjct: 257 IIVFRALGFVSDRDILEHIIYDFEDPEMMEMV 288
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/210 (60%), Positives = 150/210 (71%), Gaps = 10/210 (4%)
Query: 318 KEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF 377
+++L H+ DF + + +++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LF
Sbjct: 269 RDILEHI-IYDFEDPEMMEMVIYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLF 327
Query: 378 RTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRA 436
R +F+ L +VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RA
Sbjct: 328 RGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARA 387
Query: 437 GVSQVLNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVK 488
GVSQVLN LT+AST ++ KLAKPRQLHN+ WGM+CPAETPEG A GLVK
Sbjct: 388 GVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVK 447
Query: 489 NLALMVYITIGSAAYPILEFLEEWGTENFE 518
NLALM YI++GS PILEFLEEW EN E
Sbjct: 448 NLALMAYISVGSQPSPILEFLEEWSMENLE 477
>gi|15679062|ref|NP_276179.1| DNA-directed RNA polymerase subunit beta'' [Methanothermobacter
thermautotrophicus str. Delta H]
gi|6685897|sp|O27123.1|RPOB2_METTH RecName: Full=DNA-directed RNA polymerase subunit B''
gi|2622148|gb|AAB85540.1| DNA-dependent RNA polymerase, subunit B'' [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 519
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 174/533 (32%), Positives = 285/533 (53%), Gaps = 60/533 (11%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
++ ++ AW ++ A+F++ LV + S+++F N +QEI+D S IE+ +
Sbjct: 5 KSMKKSAWGLVDAFFDKYDLVDHHIHSYNDFVSNRIQEIIDTSEPIEL-----EQGKYRV 59
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE----- 129
+ ++ + KP + E+DG + ++ ARLRNLTYSA + +++ R++K+G E
Sbjct: 60 ETGKVSIEKPFIKEADGSKSKIYPTEARLRNLTYSAHMSLEM--RLLKEGGPETEFEKVY 117
Query: 130 ---VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVF 186
+P+ML+S C L+ S+K L E GE P D GGYFI+NGSE+ ++ E+++ N + +
Sbjct: 118 IGELPVMLKSEICHLHGLSRKELMEKGEDPADPGGYFIVNGSERSIVTMEEIAPNKIILE 177
Query: 187 KKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPI 246
+ + ++ A V S+ F +S K +G ++ + PY+ EIP+
Sbjct: 178 RIGEEDENRARAIVTSIRSG--------FRARISLEYRKPRKTGVFLRISFPYVPGEIPL 229
Query: 247 IILFRALGFTADEDILEHICYDFQ-------DTQ------------MMELLRPSLEEAFF 287
+IL RALG D++I+ I DF D Q M EL E
Sbjct: 230 VILLRALGLATDQEIITSISDDFNYQMIAADDIQVSLDRLNLNKKEMKELDEEDRREYLI 289
Query: 288 IQNQQYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLL 347
+YIG R A G+T + IK A++++ + +LPH+GT +KA Y + LL
Sbjct: 290 RSAIKYIGNRVAK-GMTEDYRIKRAEDVIDRYLLPHIGTEPEKRLEKATYLAEMTEMLLQ 348
Query: 348 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA 407
G R D+DHY NKRL ++G L+ L R F L+ D+ +++ + GK+ +++ A
Sbjct: 349 VISGERRPHDKDHYTNKRLRVSGDLMEDLLRVAFTSLSRDMSYQLERSLARGKEPSVKQA 408
Query: 408 IKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----- 462
+++ +T LK+++ATGNW G RAGVSQ+L+ +Y T ++ ++ P
Sbjct: 409 VRSDVLTENLKHAIATGNW-----VGGRAGVSQLLDRTSYMGTLSHM--RRVVSPLSRSQ 461
Query: 463 -----RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLE 510
R LH +Q+G +CP ETPEG CGLVKNLAL+ I+ GS A + E ++
Sbjct: 462 PHFEARDLHPTQFGKICPNETPEGPNCGLVKNLALLAKISEGSDASEVEEVIK 514
>gi|429217659|ref|YP_007175649.1| DNA-directed RNA polymerase subunit B [Caldisphaera lagunensis DSM
15908]
gi|429134188|gb|AFZ71200.1| DNA-directed RNA polymerase subunit B [Caldisphaera lagunensis DSM
15908]
Length = 1172
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 181/528 (34%), Positives = 274/528 (51%), Gaps = 59/528 (11%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPE---------SQHN 69
++ W++ Y E GL RQ LDSF+ F + +Q+I+D EIRP S+
Sbjct: 11 DDLWSLFRQYIHENGLSRQHLDSFNSFVKERLQKIIDSYG--EIRPAFKQVKKNEISEEG 68
Query: 70 PGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE- 128
P + I + P + E+DG T + AR+RNLTYS PLY+++ +I+ G++ E
Sbjct: 69 PDIRVVLGRIKILDPQIKEADGNTRLITPAEARIRNLTYSGPLYLEMA--LIENGNEIER 126
Query: 129 ------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNH 182
+ PIM++S + + + L GE PYD GGYFIINGSE+V++AQE ++ N
Sbjct: 127 EELKIADFPIMVKSVVDPISKYKEDELINKGEDPYDPGGYFIINGSERVIVAQEDLAVNR 186
Query: 183 VYV-FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIR 241
+ V K + A+V S R + V ++ + + ++ +
Sbjct: 187 IIVGLSTANTAKITHTAKVVSTVLGLRR---QVIVDRMNDGT---------LELSMSRLG 234
Query: 242 TEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEE-AFFIQNQQ----YIGK 296
IP +++ +ALG D +I + +D D Q ELL PS E+ AF I+ + YIG
Sbjct: 235 YRIPFVVMMKALGLEKDAEIAASVSFD-SDIQR-ELL-PSFEKVAFTIKTTEDALEYIGN 291
Query: 297 RGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAED 356
R A G RE I A++ + + LPH+G KKAY+ G + +R+L L +R ED
Sbjct: 292 RLAP-GQPREIRIARAEDFIDNQFLPHLGNKPEDRKKKAYFLGEMANRVLQLYLNKRGED 350
Query: 357 DRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGG 416
D+DHY NKRL LAG L+ +FR F++ V S +++ + K + L+F +++ IT
Sbjct: 351 DKDHYSNKRLRLAGDLIAEIFRDAFQQFVNTVSSQLEEYISQRKKLRLRFLVRSDIITER 410
Query: 417 LKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLH 466
++ +LATGNW Q R GVSQ L+ + S ++ ++ P R LH
Sbjct: 411 IRAALATGNWTQ-----NRTGVSQALDRTNWISLLSHL--RRVISPLSRGQTHFEARDLH 463
Query: 467 NSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
+ WG +CP ETPEG CGLVKNLALM YI++G + L G
Sbjct: 464 GTHWGRLCPFETPEGINCGLVKNLALMTYISVGVDEKEVERILRNQGV 511
>gi|212223363|ref|YP_002306599.1| DNA-directed RNA polymerase subunit B [Thermococcus onnurineus NA1]
gi|212008320|gb|ACJ15702.1| Subunit B of DNA-dependent RNA polymerase [Thermococcus onnurineus
NA1]
Length = 1120
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 183/529 (34%), Positives = 287/529 (54%), Gaps = 53/529 (10%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
+ T ++ W V+ AY++EKGLVRQ LDS++ F MQ++++E I +P+ P +
Sbjct: 8 DVTPDDLWLVMEAYWKEKGLVRQHLDSYNAFIDYGMQQVINEFGGI--KPDI---PDFEV 62
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV---- 130
F +I L +P E+ G+ L+ AR+RNLTYSAPLY+++ V + EV
Sbjct: 63 KFGKIRLGEPEFQEAQGQRKPLYPMDARIRNLTYSAPLYLELIPVVNGIAQEPVEVRIGE 122
Query: 131 -PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
PIML+S C LY S + L +LGE P D GGYFIINGSE+V+++ E ++ N V +
Sbjct: 123 LPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDLAPNKTLVERDE 182
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
+ N+ +A+ S + +++ K G ++ +P + + + +
Sbjct: 183 RQNRI--IAKCFSYRHG--------YRALITVERRKDG----ILYVNIPNVPRPVKFVYV 228
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
RALG +D++I+E + D ++ ++L +LE+A I +++ YIGK A G +
Sbjct: 229 MRALGLESDKEIVEAVS---DDPRIQQVLFDNLEDASDIMSREEALDYIGKL-ALPGQPK 284
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
E ++ A+ I+ +LPH+G + KAYY G + ++L +LG R EDD+DHY NKR
Sbjct: 285 EYRLRRAEHIIDNNLLPHMGVEEKDRRAKAYYLGMMALKVLELSLGLRGEDDKDHYANKR 344
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV----NLQF----AIKAKTITGGL 417
L LAG LL LFR F +L D++ + K + N+Q +I+ ++ +
Sbjct: 345 LKLAGDLLRDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERI 404
Query: 418 KYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY--LSWKLAK------PRQLHNSQ 469
+++LATG W G R GVSQ+L+ Y ST ++ ++ L++ R LH +
Sbjct: 405 EHALATGAW-----PGGRTGVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEARDLHGTH 459
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
WG +CP ETPEG CGLVKNLALM IT G + ++L G E
Sbjct: 460 WGRICPTETPEGPNCGLVKNLALMAQITTGIPEEEVRDYLNRLGVVPIE 508
>gi|270304858|gb|ACZ71368.1| RNA polymerase II second largest subunit [Metzgeria furcata]
Length = 155
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 135/155 (87%), Positives = 144/155 (92%), Gaps = 4/155 (2%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETKKAY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 378
RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR
Sbjct: 121 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 155
>gi|145525932|ref|XP_001448777.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416343|emb|CAK81380.1| unnamed protein product [Paramecium tetraurelia]
Length = 1203
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 182/550 (33%), Positives = 298/550 (54%), Gaps = 77/550 (14%)
Query: 9 EEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH 68
+EDE ++ ++ W V+ +F+ GLV QQ++S++ F +N ++ + +R + Q+
Sbjct: 21 DEDENQKLDNDDIWKVLHMFFQTHGLVSQQINSYESFVENIIKYVRGHEGTFVVRVKPQY 80
Query: 69 NPGQQSDFAEIYLSKPMMTES---------DGETATLFLKAARLRNLTYSAPLYVDVTKR 119
++ D YL + + D +F ARLR+LTYS L +D+
Sbjct: 81 KEEERMDAQTEYLYQFQIQRCFMGKKNIHIDKFEEEIFPMIARLRDLTYSRQLKIDLEVT 140
Query: 120 VIKKG-HDGE---------------EVPIMLRSSYCTLYQNSQ-----KALTELGECPYD 158
+ ++ DG ++PIM+RS +C+L ++ + + + GEC +D
Sbjct: 141 MQQRNKRDGSIEEKSKQTFKGLPFFKLPIMVRSRFCSLPKDPKDPEQIQQRIQSGECGFD 200
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
+GGYFI+ GSEKV++AQE+++ N V VFK + NK +VAE+ S + + P + V +
Sbjct: 201 QGGYFILRGSEKVIVAQERIANNVVLVFKSKIVNK-PWVAEIRSQPDLWSNP-NNFKVEL 258
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTE---------IPIIILFRALGFTADEDILEHICYDF 269
+YI T P IR IP+ LFRALG ++D++ILE I Y+
Sbjct: 259 ------------RYIQNT-PVIRCSVKQFNSTQGIPLFTLFRALGISSDQEILERIVYNL 305
Query: 270 QDTQM---MELLRPSLEEAFFIQNQQ----YIGKR-GATVGVTREKMIKYAKEILQKEML 321
+D QM +E+L SL+E ++++ +IG + E +I+ AK+++ K +L
Sbjct: 306 EDEQMGPMLEMLYGSLQEGGEYEDEELCLRWIGNKIKKAENQDPETLIQEAKKLINKNIL 365
Query: 322 PHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLF 381
PH+G +KAY+ G+I+HRLL +LG+ +DDRDHYG KRLD+AG ++ G+F+T F
Sbjct: 366 PHIGVSSESRDRKAYFIGYIVHRLLNASLGKTDQDDRDHYGKKRLDMAGAMMMGVFKTSF 425
Query: 382 RKLTGDVRSYVQKCVDNGKDVNLQFAIKA----KTITGGLKYSLATGNWGQGNAAG-TRA 436
+ + ++K + NG+++ IK+ + I+ + +LATGNWG+ +
Sbjct: 426 ESFKQNAKKALEKYI-NGENMRQPDDIKSFFDGEQISKDIDNALATGNWGRSKEGQVVKT 484
Query: 437 GVSQVLNCLTYASTFTYYL---------SWKLAKPRQLHNSQWGMMCPAETPEGQACGLV 487
GV+Q L T +L KL+KPRQLHN+ +G +CPAETPEGQ G+V
Sbjct: 485 GVAQTLKRETSLFATLSHLRRMNAPINPQMKLSKPRQLHNTHFGFICPAETPEGQKIGIV 544
Query: 488 KNLALMVYIT 497
KNL+LM ++
Sbjct: 545 KNLSLMTAVS 554
>gi|134045262|ref|YP_001096748.1| DNA-directed RNA polymerase subunit beta'' [Methanococcus
maripaludis C5]
gi|132662887|gb|ABO34533.1| DNA-directed RNA polymerase, subunit B' [Methanococcus maripaludis
C5]
Length = 499
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 179/522 (34%), Positives = 279/522 (53%), Gaps = 57/522 (10%)
Query: 20 EAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEI 79
E+ V+ A+F+E LV+ +DS+D+F +N +Q+I+DE +E ++ G + FA++
Sbjct: 2 ESRVVVDAFFKENSLVKHHIDSYDDFVKNKIQKIIDEVTGVE----TEIKGGYKVSFAKV 57
Query: 80 YLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE---------- 129
++KP+ E+DG + AR+RNL YSAPLY+++ V G D EE
Sbjct: 58 RVTKPINKEADGSVKEITPMEARIRNLAYSAPLYLEMIPTV---GEDEEEKVLSPVEVYI 114
Query: 130 --VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
+P+ML S C L S + L + GE D GYFI+NGSEK ++AQE + N + K
Sbjct: 115 GELPVMLGSEICHLCGKSDEELIKYGEDIQDPLGYFIVNGSEKAVVAQEDLIPNRIICEK 174
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+ NK +A+V S F + + G ++ + P + + IP++
Sbjct: 175 VEKNNKVVDIAKVFSTRHG--------FRALCTVERNPDG----LLNVSFPGMPSTIPLV 222
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMEL---LRPSLEEAFFIQNQ---QYIGKRGATV 301
IL RALG +D +I+E I + T +M+L L+ + EE + ++IGKR A
Sbjct: 223 ILMRALGAESDREIIELISD--EPTVVMQLIANLQEAREEHAINTTEDALEHIGKRVAP- 279
Query: 302 GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHY 361
G +E +K A+ IL +LPH+G K Y G + + LG R EDD+DHY
Sbjct: 280 GQPKEYKLKRAETILCNYLLPHMGVESEKLGAKCKYLGRMAKNSIELYLGLRVEDDKDHY 339
Query: 362 GNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSL 421
NKRL LAG L+ LFR F +L D++ +++ K+ ++Q A+++ +T +++++
Sbjct: 340 SNKRLKLAGDLMEDLFRHSFNQLIKDIKYQLERQAIRNKEPSIQAAVRSDVLTERMRHAM 399
Query: 422 ATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNSQWG 471
ATGNW G R GVSQ+L+ +Y +T + ++ P R LH +QWG
Sbjct: 400 ATGNW-----VGGRTGVSQLLDRTSYLATVSQL--RRVVSPLSRSQPHFEARDLHATQWG 452
Query: 472 MMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
+CP+ETPEG CGLVKNLA+M +T ++E L E G
Sbjct: 453 KICPSETPEGPNCGLVKNLAVMCKVTTDEGDDSVIELLRELG 494
>gi|150402530|ref|YP_001329824.1| DNA-directed RNA polymerase subunit beta'' [Methanococcus
maripaludis C7]
gi|150033560|gb|ABR65673.1| RNA polymerase beta subunit [Methanococcus maripaludis C7]
Length = 499
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 178/522 (34%), Positives = 281/522 (53%), Gaps = 57/522 (10%)
Query: 20 EAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEI 79
E+ V+ A+F+E LV+ +DS+D+F +N +Q+I+DE +E ++ G + F ++
Sbjct: 2 ESRVVVDAFFKENSLVKHHIDSYDDFVKNKIQKIIDEVTGVE----TEIKGGYKVSFDKV 57
Query: 80 YLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE---------- 129
++KP+ E+DG + AR+RNL YSAPLY+++ V G D EE
Sbjct: 58 RVTKPINKEADGSVKEITPMEARIRNLAYSAPLYLEMIPTV---GEDEEEKVLSPVEVYI 114
Query: 130 --VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
+P+ML S C L S++ L + GE D GYFI+NGSEK ++AQE + N + K
Sbjct: 115 GELPVMLGSEICHLCGKSEEELIKYGEDTKDPLGYFIVNGSEKAVVAQEDLIPNRIICEK 174
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+ NK +A+V S F + + G ++ + P + + IP++
Sbjct: 175 VEKNNKIVDIAKVFSTRHG--------FRALCTVERNPDG----LLNVSFPGMPSTIPLV 222
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMEL---LRPSLEEAFFIQNQ---QYIGKRGATV 301
IL RALG +D +I+E I + T +M+L L+ + EE + ++IGKR A
Sbjct: 223 ILMRALGAESDREIIELISD--EPTVVMQLIANLQEAREEHAINTTEDALEHIGKRVAP- 279
Query: 302 GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHY 361
G +E +K A+ IL +LPH+G K Y G + + LG R EDD+DHY
Sbjct: 280 GQPKEYKLKRAETILCNYLLPHMGVESAKLGAKCKYLGRMAKNSIELYLGLRVEDDKDHY 339
Query: 362 GNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSL 421
NKRL LAG L+ LFR F +L D++ +++ K+ ++Q A+++ +T +++++
Sbjct: 340 SNKRLKLAGDLMEDLFRHSFNQLIKDIKYQLERQAIRNKEPSIQAAVRSDVLTERMRHAM 399
Query: 422 ATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNSQWG 471
ATGNW G R GVSQ+L+ +Y +T + ++ P R LH +QWG
Sbjct: 400 ATGNW-----VGGRTGVSQLLDRTSYLATVSQL--RRVVSPLSRSQPHFEARDLHATQWG 452
Query: 472 MMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
+CP+ETPEG CGLVKNLA+M +T + ++E L+E G
Sbjct: 453 KICPSETPEGPNCGLVKNLAVMCKVTTDESDDNVIELLKELG 494
>gi|297619554|ref|YP_003707659.1| RNA polymerase subunit beta [Methanococcus voltae A3]
gi|297378531|gb|ADI36686.1| RNA polymerase beta subunit [Methanococcus voltae A3]
Length = 604
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 174/519 (33%), Positives = 275/519 (52%), Gaps = 51/519 (9%)
Query: 20 EAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEI 79
++ ++ A+FEE LV+ +DSF+ F +N +Q+I+ E + +S G + +F +
Sbjct: 2 KSRVIVDAFFEENNLVKHHIDSFNSFVENKVQKIISEVGGVNTEIKS----GYRVEFGTV 57
Query: 80 YLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE---------EV 130
+SKP+ E+DG + AR+RNL YSAP+Y+++ V + + + E+
Sbjct: 58 AISKPVNKEADGSVKPITPMEARIRNLAYSAPMYLEIVPFVGENEEEKKLSPLTVYMGEL 117
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
P++L S C L S + L E GE P D GYFI+NGSEK ++AQE + N + K +
Sbjct: 118 PVILGSDICHLKGKSPEELIEYGEDPEDPLGYFIVNGSEKAVVAQEDLIPNRILCEKVEK 177
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILF 250
NK VA+V S F + + G ++ + P + + IP++IL
Sbjct: 178 NNKMVDVAKVFSTRHG--------FRALCAVERNPDG----LLNVSFPGMPSNIPLVILM 225
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLR--PSLEEAFFIQNQQ----YIGKRGATVGVT 304
RALG +D DI+E I + + +M+L+ + E I ++ +IGKR A G
Sbjct: 226 RALGAQSDRDIIELISD--EPSVIMQLVANLQEVREEHSINTREDALEHIGKRVAP-GQP 282
Query: 305 REKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNK 364
RE +K A+ IL +LPH+G KA Y G + + LG R EDD+DHY NK
Sbjct: 283 REYKLKRAETILCSYLLPHLGVEPADMRTKAKYLGRMAKNSIELYLGLRVEDDKDHYSNK 342
Query: 365 RLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATG 424
RL LAG L+ LFR F +L D++ +++ K+ ++Q A+++ +T +++++ATG
Sbjct: 343 RLKLAGDLMEDLFRNSFNQLVKDIKYQLERQSIRNKEPSIQAAVRSDVLTERMRHAMATG 402
Query: 425 NWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNSQWGMMC 474
NW G R GVSQ+L+ +Y +T + ++ P R LH +QWG +C
Sbjct: 403 NW-----VGGRTGVSQLLDRTSYLATTSQL--RRVVSPLSRSQPHFEARDLHATQWGKIC 455
Query: 475 PAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
P+ETPEG CGLVKNLA+M +T +++ L G
Sbjct: 456 PSETPEGPNCGLVKNLAVMCKVTTDQPDDSVIDLLSSMG 494
>gi|159905695|ref|YP_001549357.1| DNA-directed RNA polymerase subunit beta'' [Methanococcus
maripaludis C6]
gi|159887188|gb|ABX02125.1| RNA polymerase beta subunit [Methanococcus maripaludis C6]
Length = 499
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 178/522 (34%), Positives = 279/522 (53%), Gaps = 57/522 (10%)
Query: 20 EAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEI 79
E+ V+ A+F+E LV+ +DS+D+F +N +Q+I+DE +E ++ G + F ++
Sbjct: 2 ESRVVVDAFFKENSLVKHHIDSYDDFVKNKIQKIIDEVTGVE----TEIKGGYKVSFDKV 57
Query: 80 YLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE---------- 129
++KP+ E+DG + AR+RNL YSAPLY+++ V G D EE
Sbjct: 58 RVTKPINKEADGSVKEITPMEARIRNLAYSAPLYLEMIPTV---GEDEEEKVLSPVEVYI 114
Query: 130 --VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
+P+ML S C L S++ L + GE D GYFI+NGSEK ++AQE + N + K
Sbjct: 115 GELPVMLGSEICHLCGKSEEELIKYGEDTKDPLGYFIVNGSEKAVVAQEDLIPNRIICEK 174
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+ NK +A+V S F + + G ++ + P + + IP++
Sbjct: 175 VEKNNKIVDIAKVFSTRHG--------FRALCTVERNPDG----LLNVSFPGMPSTIPLV 222
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMEL---LRPSLEEAFFIQNQ---QYIGKRGATV 301
IL RALG +D +I+E I + T +M+L L+ + EE + ++IGKR A
Sbjct: 223 ILMRALGAESDREIIELISD--EPTVVMQLIANLQEAREEHAINTTEDALEHIGKRVAP- 279
Query: 302 GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHY 361
G +E +K A+ IL +LPH+G K Y G + + LG R EDD+DHY
Sbjct: 280 GQPKEYKLKRAETILCNYLLPHMGVESEKLGAKCKYLGRMAKNSIELYLGLRVEDDKDHY 339
Query: 362 GNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSL 421
NKRL LAG L+ LFR F +L D++ +++ K+ ++Q A+++ +T +++++
Sbjct: 340 SNKRLKLAGDLMEDLFRHSFNQLIKDIKYQLERQAIRNKEPSIQAAVRSDVLTERMRHAM 399
Query: 422 ATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNSQWG 471
ATGNW G R GVSQ+L+ +Y +T + ++ P R LH +QWG
Sbjct: 400 ATGNW-----VGGRTGVSQLLDRTSYLATVSQL--RRVVSPLSRSQPHFEARDLHATQWG 452
Query: 472 MMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
+CP+ETPEG CGLVKNLA+M +T ++E L E G
Sbjct: 453 KICPSETPEGPNCGLVKNLAVMCKVTTDEGDDSVIELLRELG 494
>gi|133463|sp|P09844.1|RPOB2_METTW RecName: Full=DNA-directed RNA polymerase subunit B''
gi|44665|emb|CAA30836.1| unnamed protein product [Methanothermobacter thermautotrophicus]
Length = 515
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 175/539 (32%), Positives = 290/539 (53%), Gaps = 65/539 (12%)
Query: 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS-DF 76
++ AW ++ A+F++ LV + S+++F N +QEI+D S IE+ GQ + +
Sbjct: 2 KKSAWGLVDAFFDKYDLVDHHIHSYNDFVSNRIQEIIDTSEPIEL------EQGQYTVET 55
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKG---------HDG 127
++ + KP + E+DG + ++ ARLRNLTYSA + +++ R++K+G H G
Sbjct: 56 GKVTIEKPFIKEADGSKSKIYPTEARLRNLTYSAHMSLEM--RLLKEGGSETEFEKVHIG 113
Query: 128 EEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
E +P+ML+S C L+ + L E GE P D GGYFI+N SE+ ++ E+++ N + + +
Sbjct: 114 E-LPVMLKSEICHLHGLGRDELIEKGEDPADLGGYFIVNASERSIVTMEEIAPNKIILER 172
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+ ++ A V S+ F +S K +G ++ + PY+ E+P++
Sbjct: 173 IGEEDEKRARAIVTSIRSG--------FRARISLEYRKPRKTGVFLRISFPYVPGELPLV 224
Query: 248 ILFRALGFTADEDILEHICYDFQ------DTQMMELLRPSLEE-------------AFFI 288
IL RALG D++I+ I DF D + L + L+ + I
Sbjct: 225 ILLRALGLATDQEIITSISDDFNYQMIAADDIQVSLDKLKLDSDKMEEEMDEEERREYLI 284
Query: 289 QNQ-QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLL 347
++ +YIG R A G+T + IK A++++ + +LPH+GT +KA Y + LL
Sbjct: 285 RSAIKYIGNRVAK-GMTEDYRIKRAEDVIDRYLLPHIGTEPDKRLEKAVYLAEMTEMLLQ 343
Query: 348 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA 407
G R D+DHY NKRL ++G L+ LFR F LT D+ +++ + GK+ +++ A
Sbjct: 344 VISGERKPHDKDHYTNKRLRVSGDLMEDLFRVAFTSLTRDMSYRLERSLARGKEPSVKQA 403
Query: 408 IKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----- 462
+++ ++ LK+++ATGNW G RAGVSQ+L+ +Y T ++ ++ P
Sbjct: 404 VRSDVLSENLKHAIATGNW-----VGGRAGVSQLLDRTSYMGTLSHM--RRVVSPLSRSQ 456
Query: 463 -----RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
R LH +Q+G +CP ETPE CGLVKNLALM I+ GS I E +++ G N
Sbjct: 457 PHFEARDLHPTQFGKICPNETPESPNCGLVKNLALMAKISEGSDPDEIEEVIKKMGVIN 515
>gi|343477106|emb|CCD11984.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1186
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 187/540 (34%), Positives = 291/540 (53%), Gaps = 49/540 (9%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEF------NQNTMQEIVDESAD-IEIRPESQ 67
E E+ W VIS++F EKGLV QQ+DS+++F ++ EIV D E E +
Sbjct: 33 EIDSEDIWEVISSFFREKGLVHQQVDSYNDFLLRIPRMARSLLEIVPRQDDQFEPGVEME 92
Query: 68 HNPGQ-QSDFAEIYLSKP---MMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKK 123
P Q + ++ + P + S E LF RLR+LTY A V + RV +
Sbjct: 93 SEPDQYRLSLEDVVVGNPSHEISGFSRAEMHPLFPNECRLRDLTYDANAQVTLGIRVYRS 152
Query: 124 GHDGE-----------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVL 172
D +PIML+S C L ++ L L ECP+D+GGYFI+NG+EKVL
Sbjct: 153 REDQPYRTFLQNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKVL 212
Query: 173 IAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQY 232
IAQE+ + NHVY F + + + E+ S+ E P T+ + M + S G +
Sbjct: 213 IAQERQAANHVYAFTRPK----GLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHGY-EN 267
Query: 233 IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFI 288
+ + + IP+ ILFRAL +D++IL+ + D +D M+E+LR S+E+A F
Sbjct: 268 LLCRVAQMDELIPLFILFRALDMGSDKEILQTVVPDLKDAAMLEMLRGSMEDASTLQVFT 327
Query: 289 QNQQ--YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLL 346
+++ +IGKR +R+ + + A+++L +++LPH+G + K + G+++HRLL
Sbjct: 328 RDEALWFIGKRLGKQD-SRDNLQREAQDLLMRDLLPHMGVDCAADRSKCLFIGYMVHRLL 386
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPL----LGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
L ALGRR + DRD G+KR+D+AG L L + R++T V + + V
Sbjct: 387 LLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMTRTVHDF---STNRSGVV 443
Query: 403 NLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFT--------YY 454
+ + ++ IT G++ LATGN+G + + GVSQ LN LTY+S+ +
Sbjct: 444 SFGRILHSRLITDGMRRCLATGNFGDLKSGNIKTGVSQTLNRLTYSSSLSNLRRIQNPIS 503
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
S K +PR LH +QWG +CP ETPEG + GL+KNLALM ++ GS +++ ++ T
Sbjct: 504 ASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDHTGVVQVVQSRTT 563
>gi|342180758|emb|CCC90234.1| unnamed protein product [Trypanosoma congolense IL3000]
gi|343476499|emb|CCD12414.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1186
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 187/540 (34%), Positives = 291/540 (53%), Gaps = 49/540 (9%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEF------NQNTMQEIVDESAD-IEIRPESQ 67
E E+ W VIS++F EKGLV QQ+DS+++F ++ EIV D E E +
Sbjct: 33 EIDSEDIWEVISSFFREKGLVHQQVDSYNDFLLRIPRMARSLLEIVPRQDDQFEPGVEME 92
Query: 68 HNPGQ-QSDFAEIYLSKP---MMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKK 123
P Q + ++ + P + S E LF RLR+LTY A V + RV +
Sbjct: 93 SEPDQYRLSLEDVVVGNPSHEISGFSRAEMHPLFPNECRLRDLTYDANAQVTLGIRVYRS 152
Query: 124 GHDGE-----------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVL 172
D +PIML+S C L ++ L L ECP+D+GGYFI+NG+EKVL
Sbjct: 153 REDQPYRTFLQNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKVL 212
Query: 173 IAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQY 232
IAQE+ + NHVY F + + + E+ S+ E P T+ + M + S G +
Sbjct: 213 IAQERQAANHVYAFTRPK----GLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHGY-EN 267
Query: 233 IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFI 288
+ + + IP+ ILFRAL +D++IL+ + D +D M+E+LR S+E+A F
Sbjct: 268 LLCRVAQMDELIPLFILFRALDMGSDKEILQTVVPDLKDAAMLEMLRGSMEDASTLQVFT 327
Query: 289 QNQQ--YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLL 346
+++ +IGKR +R+ + + A+++L +++LPH+G + K + G+++HRLL
Sbjct: 328 RDEALWFIGKRLGKQD-SRDNLQREAQDLLMRDLLPHMGVDCAADRSKCLFIGYMVHRLL 386
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPL----LGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
L ALGRR + DRD G+KR+D+AG L L + R++T V + + V
Sbjct: 387 LLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMTRTVHDF---STNRSGVV 443
Query: 403 NLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFT--------YY 454
+ + ++ IT G++ LATGN+G + + GVSQ LN LTY+S+ +
Sbjct: 444 SFGRILHSRLITDGMRRCLATGNFGDLKSGNIKTGVSQTLNRLTYSSSLSNLRRIQNPIS 503
Query: 455 LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
S K +PR LH +QWG +CP ETPEG + GL+KNLALM ++ GS +++ ++ T
Sbjct: 504 ASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDHTGVVQVVQSRTT 563
>gi|325960117|ref|YP_004291583.1| RNA polymerase subunit beta [Methanobacterium sp. AL-21]
gi|325331549|gb|ADZ10611.1| RNA polymerase beta subunit [Methanobacterium sp. AL-21]
Length = 500
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 165/517 (31%), Positives = 280/517 (54%), Gaps = 51/517 (9%)
Query: 21 AWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF---- 76
AW ++ A+F+E LV + S+++F + +Q+I+D + I + +Q ++
Sbjct: 5 AWKLVDAFFDEYNLVDHHIKSYNDFVNHRIQDIIDITEPIVL---------EQGEYTIKT 55
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE------- 129
+ + KP + E+DG + +F ARLRNLTYSA +Y+++ + KKG + +E
Sbjct: 56 GNVEIKKPFIKEADGSNSKIFPTEARLRNLTYSAHMYLEMA--LTKKGDEEQEMENVYIG 113
Query: 130 -VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKK 188
+P+ML+S+ C L S++ + ++GE P D GGYFI+NGSE+ ++ E+++ N + + +
Sbjct: 114 ELPVMLKSNICHLNGLSEEEIDDVGEDPQDPGGYFIVNGSERAIVTMEEIAPNKIILERI 173
Query: 189 RQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIII 248
+ A V S+ F ++ K G ++ + PY+ EIP+++
Sbjct: 174 GELEDRRARAIVTSIKSG--------FRARITLEYRKPRKKGVFLRISFPYVPGEIPLVV 225
Query: 249 LFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ-QYIGKRGATVGVTREK 307
L RALGF D+D++ + D D Q + + E + +YIG R A G+T E
Sbjct: 226 LLRALGFETDQDLITSVS-DENDIQFLLIDDIQTSEIMTQYDAIKYIGNRVAK-GMTEEY 283
Query: 308 MIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLD 367
IK A++++ K +LPH+G +KA Y + LL R D+DHY NKRL
Sbjct: 284 RIKRAEDVIDKYLLPHIGVDPSQRAEKATYLAEMTEMLLQVIFETREPHDKDHYANKRLR 343
Query: 368 LAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG 427
++G L+ LFR F LT D+ +++ + GK+ +++ A+++ +T +K+++ATGNW
Sbjct: 344 VSGDLMEDLFRVAFTSLTRDMTYQLERSLARGKEPSVKQAVRSDVLTENIKHAIATGNW- 402
Query: 428 QGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNSQWGMMCPAE 477
G RAGVSQ+L+ +Y T ++ ++ P R LH +Q+G +CP E
Sbjct: 403 ----VGGRAGVSQLLDRTSYMGTLSHL--KRVVSPLSRSQPHFEARDLHPTQFGKICPNE 456
Query: 478 TPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
TPEG CGLVKNLA++ I+ GS + E +++ G
Sbjct: 457 TPEGPNCGLVKNLAILSKISEGSDPEELEEIIKKMGV 493
>gi|312136877|ref|YP_004004214.1| DNA-directed RNA polymerase, subunit b' [Methanothermus fervidus
DSM 2088]
gi|311224596|gb|ADP77452.1| DNA-directed RNA polymerase, subunit B' [Methanothermus fervidus
DSM 2088]
Length = 513
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 178/519 (34%), Positives = 279/519 (53%), Gaps = 57/519 (10%)
Query: 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFA 77
+ + W ++ A+F+E LV +DS+++F +Q+I+DE +EI PE + +
Sbjct: 2 KNDKWELVEAFFDEHSLVDHHIDSYNDFVNRRLQKIIDE---VEI-PELGEG-EYEIEIG 56
Query: 78 EIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV-----PI 132
E+ + KP +TE+DG + ++ ARLRNLTY+A L++++ K EEV P+
Sbjct: 57 ELKIEKPYITEADGSKSKIYPMEARLRNLTYAAHLFLEMGLSKSGKRPSFEEVYIGELPV 116
Query: 133 MLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN 192
ML+S C L S+K L E+GE P D GGYFIINGSE+VL++ E+++ N V + K +
Sbjct: 117 MLKSDICHLNGLSKKELIEVGEDPNDPGGYFIINGSERVLVSIEEIAPNKVIIEKDEEKE 176
Query: 193 KYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRA 252
+ V V S+ + F L+ K +G Y+ + PY+ EIP+++L RA
Sbjct: 177 RVKSV--VTSVRKG--------FRSRLTLEYKKPRKTGVYLRVSFPYVPGEIPLVVLLRA 226
Query: 253 LGFTADEDILEHICYDFQ-------DTQMME---------LLRPSLEE--AFFIQNQ-QY 293
LG DE+I+ +I DF D Q++E L + S EE + I++ +Y
Sbjct: 227 LGLATDEEIITNISEDFNYQIIVADDLQIVEDSLRLDKEKLNKASEEENRKYLIESALRY 286
Query: 294 IGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRR 353
IG R A G+ E I A++++ +LPH+G KKA Y + L G R
Sbjct: 287 IGNRVAG-GMAEEYRISRAEDVIDNYLLPHIGVKPEDRIKKAIYLCEMAEMTLQVVFGER 345
Query: 354 AEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTI 413
D+DHY NKRL +G L+ LFR F L D+ +++ + K +++ A++ +
Sbjct: 346 EPHDKDHYANKRLKTSGDLMEDLFRVAFTGLIRDMAYQIERNLTRRKKPSIRQAVRPDVL 405
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------R 463
T +K+++ATGNW G R GVSQ+L+ + ++ ++ ++ P R
Sbjct: 406 TENIKHAIATGNW-----VGGRVGVSQLLDRTNHIASLSHL--RRVVSPLSRSQPHFEAR 458
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAA 502
LH +Q+G +CP ETPEG CGLVKNLALM I+ G+ A
Sbjct: 459 DLHATQFGRICPIETPEGPNCGLVKNLALMARISEGTDA 497
>gi|242398379|ref|YP_002993803.1| DNA-directed RNA polymerase subunit B [Thermococcus sibiricus MM
739]
gi|242264772|gb|ACS89454.1| DNA-directed RNA polymerase subunit B [Thermococcus sibiricus MM
739]
Length = 1118
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 177/531 (33%), Positives = 288/531 (54%), Gaps = 57/531 (10%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
E T ++ W ++ AY++EKGLVRQ LDS++ F ++ MQE++ E + +P+ P +
Sbjct: 8 EVTPDDLWHIMKAYWDEKGLVRQHLDSYNAFIEHGMQEVISEFEGV--KPDI---PDFEV 62
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE------ 128
F + L +P E+ G+ L+ AR+RNLTYSAP+++ + V KG + E
Sbjct: 63 KFGRVRLGEPEFQEAHGQRKPLYPIDARIRNLTYSAPVFLGMIPVV--KGIEQEPVEVRI 120
Query: 129 -EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
E+P+ML+S C LY S + L GE P D GGYFIINGSE+V+++ E ++ N V
Sbjct: 121 GELPVMLKSKICRLYNLSDEELIAHGEDPKDPGGYFIINGSERVIVSIEDLAPNRTLVEI 180
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+ N+Y +A+ S + +++ K G ++ ++P + + +
Sbjct: 181 DERQNRY--IAKCFSYRHG--------YRALITVERRKDG----LLYVSIPNVPGVLKFV 226
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGV 303
+ RALG +D++I++ + + ++ ++L +LE+A +Q Q+ YIGKR A G
Sbjct: 227 HIMRALGLESDKEIVDAVG---NNPEVQQVLFDNLEDASDVQTQEEALDYIGKR-AMPGQ 282
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
+E ++ A I+ +LPH+G +KAYY G + ++ +LG R EDD+DHY +
Sbjct: 283 PKEYRLRRAHSIIDNNLLPHMGVSPEDRIRKAYYLGMMALKVTELSLGLREEDDKDHYAS 342
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNG------KDVN--LQFAIKAKTITG 415
KRL LAG LL LFR F +L D++ + K +D+ ++ +++ +T
Sbjct: 343 KRLKLAGDLLKDLFRVAFGQLVKDMQYQLTKTYQRKGEKYTFQDIQRFVRNSVRPDVLTE 402
Query: 416 GLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY--LSWKLAK------PRQLHN 467
++++LATG W G R GVSQ+L+ Y ST ++ ++ L++ R LH
Sbjct: 403 RIEHALATGAW-----PGGRTGVSQLLDRTNYMSTLSHLRRVTSPLSREQPHFEARDLHG 457
Query: 468 SQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
+ WG +CP ETPEG CGLVKNL+LM IT + +LE G + E
Sbjct: 458 THWGRICPTETPEGPNCGLVKNLSLMSQITTAIPEEEVFAYLESLGIVHIE 508
>gi|336121474|ref|YP_004576249.1| RNA polymerase subunit beta [Methanothermococcus okinawensis IH1]
gi|334855995|gb|AEH06471.1| RNA polymerase beta subunit [Methanothermococcus okinawensis IH1]
Length = 505
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 175/520 (33%), Positives = 278/520 (53%), Gaps = 55/520 (10%)
Query: 20 EAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEI 79
E+ ++ ++F+E LV+ +DS+++F ++ +Q I+DE+ + ++ G + F ++
Sbjct: 2 ESRIIVDSFFKENSLVKHHIDSYNKFIESGIQRIIDEAGLVN----TEVKGGYKVKFGKV 57
Query: 80 YLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV--------- 130
+ KP+ E+DG + AR+RNL+YSAP+Y+++T +I D EE+
Sbjct: 58 RVGKPINKEADGSVKEITPMEARIRNLSYSAPVYLEMTP-IIGGEDDTEEILGDTVEVYV 116
Query: 131 ---PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
P+ML S C LY +++ L +GE P D GYFI+NGSEK ++AQE + N + K
Sbjct: 117 GELPVMLGSKACHLYGKTREELISMGEDPEDPLGYFIVNGSEKAVVAQEDLIPNRILCEK 176
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+ K Y+A+V S F + + + G ++AT P + IP+I
Sbjct: 177 VTKSGKTVYIAKVFSTRHG--------FRALCTVERHEDGR----LNATFPGMSGNIPLI 224
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLE---EAFFIQNQ---QYIGKRGATV 301
IL +ALG D DI + I D T M+L+ LE E I + +YIGKR A
Sbjct: 225 ILMKALGAENDSDIFKMISED--PTITMQLIANILEIREEHNIITREDALEYIGKRVAP- 281
Query: 302 GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHY 361
G +E +K A+ IL +LPH+G +K + G + + LG R EDD+DHY
Sbjct: 282 GQPKEYRLKRAETILCNYLLPHMGVEKEDLIEKCIFLGRMAKNAIELYLGLRVEDDKDHY 341
Query: 362 GNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSL 421
NKRL LAG L+ LFR F +L D++ +++ K ++Q A+++ +T +++++
Sbjct: 342 ANKRLKLAGDLMEDLFRYSFNQLMKDIKYQLERQAIRNKSPSIQAAVRSDVLTERIRHAM 401
Query: 422 ATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNSQWG 471
ATGNW G R GVSQ+L+ +Y +T + +L P R LH +QWG
Sbjct: 402 ATGNW-----VGGRTGVSQLLDRTSYLATVSQL--RRLVSPLSRSQPHFEARDLHATQWG 454
Query: 472 MMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEE 511
+CP+ETPEG CGLVKN+A+M +T +L L++
Sbjct: 455 KICPSETPEGPNCGLVKNIAVMCKVTTDEDDEKVLNLLKK 494
>gi|261327712|emb|CBH10689.1| DNA-directed RNA polymerase II subunit 2,putative [Trypanosoma
brucei gambiense DAL972]
Length = 1189
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 187/535 (34%), Positives = 289/535 (54%), Gaps = 53/535 (9%)
Query: 8 LEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEF------NQNTMQEIV---DESA 58
+E + E+ W +IS++F EKGLV QQ+DS+++F ++ EIV D+
Sbjct: 29 MENVNTADIDSEDIWEIISSFFREKGLVHQQVDSYNDFLLRIPRMARSLLEIVPRQDDQF 88
Query: 59 DIEIRPESQHNPGQ-QSDFAEIYLSKP---MMTESDGETATLFLKAARLRNLTYSAPLYV 114
D + ES+ P Q + ++ + P M S E LF RLR+LTY A V
Sbjct: 89 DPGVHVESE--PDQYRLSLEDVVVGNPSHEMSGFSRTEMHPLFPNECRLRDLTYDAVAQV 146
Query: 115 DVTKRVIKKGHDGE-----------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
+ RV + + +PIML+S C L ++ L L ECP+D+GGYF
Sbjct: 147 TLAIRVYRSREEQPYRTFLQNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYF 206
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS 223
I+NG+EKVLIAQE+ + NHVY F + + + E+ S+ E P T+ + M + S
Sbjct: 207 IVNGTEKVLIAQERQAANHVYAFTRPK----GLLCEIKSIVEGSLNKPRTLQILMPYKKS 262
Query: 224 AKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLE 283
G + + + + IP+ +LFRAL +D++IL+ + D +D M+E+LR S+E
Sbjct: 263 GPGHGY-ENLLCRVAQMDELIPLFVLFRALDMGSDKEILQTVVPDLKDVAMLEMLRGSME 321
Query: 284 EA----FFIQNQQ--YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
+A F +++ +IGKR +RE + + A+++L +++LPH+G + K +
Sbjct: 322 DASTLEIFTRDEALWFIGKRLGKQD-SRENLQREAQDLLMRDLLPHMGVDCAADRGKCLF 380
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL----LGGLFRTLFRKLTGDVRSYVQ 393
G+++HRLLL ALGRR + DRD G+KR+D+AG L L + R++ V Y
Sbjct: 381 IGYMVHRLLLLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMAQTVHDY-- 438
Query: 394 KCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFT- 452
+ G V+ + + IT G++ LATGN+G + + GVSQ LN LTY+S+ +
Sbjct: 439 -STNRGGVVSFGRILHNRLITDGMRRCLATGNFGDLKSGNIKTGVSQTLNRLTYSSSLSN 497
Query: 453 -------YYLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGS 500
S K +PR LH +QWG +CP ETPEG + GL+KNLALM ++ GS
Sbjct: 498 LRRIQNPISASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGS 552
>gi|72388214|ref|XP_844531.1| DNA-directed RNA polymerase II subunit 2 [Trypanosoma brucei
TREU927]
gi|62359772|gb|AAX80202.1| DNA-directed RNA polymerase II subunit 2, putative [Trypanosoma
brucei]
gi|70801064|gb|AAZ10972.1| DNA-directed RNA polymerase II subunit 2, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 1190
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 187/535 (34%), Positives = 289/535 (54%), Gaps = 53/535 (9%)
Query: 8 LEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEF------NQNTMQEIV---DESA 58
+E + E+ W +IS++F EKGLV QQ+DS+++F ++ EIV D+
Sbjct: 30 MENVNTADIDSEDIWEIISSFFREKGLVHQQVDSYNDFLLRIPRMARSLLEIVPRQDDQF 89
Query: 59 DIEIRPESQHNPGQ-QSDFAEIYLSKP---MMTESDGETATLFLKAARLRNLTYSAPLYV 114
D + ES+ P Q + ++ + P M S E LF RLR+LTY A V
Sbjct: 90 DPGVHVESE--PDQYRLSLEDVVVGNPSHEMSGFSRTEMHPLFPNECRLRDLTYDAVAQV 147
Query: 115 DVTKRVIKKGHDGE-----------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
+ RV + + +PIML+S C L ++ L L ECP+D+GGYF
Sbjct: 148 TLAIRVYRSREEQPYRTFLQNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYF 207
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS 223
I+NG+EKVLIAQE+ + NHVY F + + + E+ S+ E P T+ + M + S
Sbjct: 208 IVNGTEKVLIAQERQAANHVYAFTRPK----GLLCEIKSIVEGSLNKPRTLQILMPYKKS 263
Query: 224 AKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLE 283
G + + + + IP+ +LFRAL +D++IL+ + D +D M+E+LR S+E
Sbjct: 264 GPGHGY-ENLLCRVAQMDELIPLFVLFRALDMGSDKEILQTVVPDLKDVAMLEMLRGSME 322
Query: 284 EA----FFIQNQQ--YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
+A F +++ +IGKR +RE + + A+++L +++LPH+G + K +
Sbjct: 323 DASTLEIFTRDEALWFIGKRLGKQD-SRENLQREAQDLLMRDLLPHMGVDCAADRGKCLF 381
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL----LGGLFRTLFRKLTGDVRSYVQ 393
G+++HRLLL ALGRR + DRD G+KR+D+AG L L + R++ V Y
Sbjct: 382 IGYMVHRLLLLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMAQTVHDY-- 439
Query: 394 KCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFT- 452
+ G V+ + + IT G++ LATGN+G + + GVSQ LN LTY+S+ +
Sbjct: 440 -STNRGGVVSFGRILHNRLITDGMRRCLATGNFGDLKSGNIKTGVSQTLNRLTYSSSLSN 498
Query: 453 -------YYLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGS 500
S K +PR LH +QWG +CP ETPEG + GL+KNLALM ++ GS
Sbjct: 499 LRRIQNPISASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGS 553
>gi|150399422|ref|YP_001323189.1| DNA-directed RNA polymerase subunit beta'' [Methanococcus vannielii
SB]
gi|1173133|sp|P41558.1|RPOB2_METVS RecName: Full=DNA-directed RNA polymerase subunit B''
gi|505290|emb|CAA51726.1| DNA-directed RNA polymerase [Methanococcus vannielii]
gi|150012125|gb|ABR54577.1| RNA polymerase beta subunit [Methanococcus vannielii SB]
Length = 499
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 173/520 (33%), Positives = 281/520 (54%), Gaps = 53/520 (10%)
Query: 20 EAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEI 79
E+ ++ A+F E LV+ +DS+D+F +N +Q I+DE +E ++ G + F ++
Sbjct: 2 ESRVIVDAFFRENSLVKHHIDSYDDFVENKIQGIIDEVTGVE----TEIKGGYKVSFGKV 57
Query: 80 YLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE----------E 129
++KP+ E+DG + AR+RNL YSAPLY+++ +I +G + + E
Sbjct: 58 RVTKPINKEADGSVKEITPMEARIRNLAYSAPLYLEMIP-LIGEGDEEKTLSPIEVYIGE 116
Query: 130 VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
+P+ML + C L S++ + GE P D GYFI+NGSEK ++AQE + N + K
Sbjct: 117 LPVMLGAKICHLSGKSEEDMINYGEDPKDPLGYFIVNGSEKAVVAQEDLIPNRILCEKVE 176
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
+ NK +A+V S F + + + G ++ + P + + IP++IL
Sbjct: 177 KNNKIVDIAKVFSTRHG--------FRALCTVERSPDG----LLNVSFPGMPSTIPLVIL 224
Query: 250 FRALGFTADEDILEHICYDFQDTQMMEL---LRPSLEEAFFIQNQ---QYIGKRGATVGV 303
RALG +D +I+E I + T +M+L L+ + EE + ++IGKR A G
Sbjct: 225 MRALGAESDREIMELISD--EPTVVMQLVANLQEAREEHGINTTEDALEHIGKRVAP-GQ 281
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
+E +K A+ IL +LPH+G K Y G + + LG R EDD+DHY N
Sbjct: 282 PKEYKLKRAETILCNYLLPHMGIESEKLGAKCKYLGRMAKNSIELYLGSRVEDDKDHYAN 341
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLAT 423
KRL LAG L+ LFR F +L D++ +++ K+ ++Q A+++ +T +++++AT
Sbjct: 342 KRLKLAGDLMEDLFRHSFNQLIKDIKYQLERQAIRNKEPSIQAAVRSDVLTERMRHAMAT 401
Query: 424 GNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNSQWGMM 473
GNW G R GVSQ+L+ +Y +T + ++ P R LH +QWG +
Sbjct: 402 GNW-----VGGRTGVSQLLDRTSYLATVSQL--RRVVSPLSRSQPHFEARDLHATQWGKI 454
Query: 474 CPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
CP+ETPEG CGLVKNLA+M +T I++ ++E G
Sbjct: 455 CPSETPEGPNCGLVKNLAVMCKVTTDEEDEGIIQLIKEIG 494
>gi|67475595|ref|XP_653488.1| DNA-directed RNA polymerase subunit [Entamoeba histolytica
HM-1:IMSS]
gi|56470445|gb|EAL48102.1| DNA-directed RNA polymerase subunit, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449706687|gb|EMD46481.1| DNA-directed RNA polymerase II subunit RPB2, putative [Entamoeba
histolytica KU27]
Length = 1170
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 174/519 (33%), Positives = 271/519 (52%), Gaps = 44/519 (8%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI-RPESQHNPGQQSDFA 77
E+ W +I A+F+E GLV+QQL S++ F + I ++ IEI E +
Sbjct: 13 EQFWYLIDAHFKENGLVKQQLSSYNNFIKKVRDVITSDTTKIEISNAEVLGISANDEEEH 72
Query: 78 EIYLSKPM-----MTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGH------- 125
I L+ P+ ++ +A+LF ARLR+LTYS L V + K G
Sbjct: 73 TIVLTDPIFHFPKVSTGSKASASLFPHEARLRSLTYSCQLEVKAKDTIRKNGAEEITTVP 132
Query: 126 --DGEEVPIMLRSSYCTLYQN-SQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNH 182
D +P ML+S C L + +Q ++ EC +++GGYFII GSEKV+IAQEKM+ N
Sbjct: 133 KIDIASIPSMLKSDVCRLKRCVTQPSMINKDECSFEQGGYFIIKGSEKVVIAQEKMAPNT 192
Query: 183 VYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV--PMLSRTSAKGGSSGQYIHATLPYI 240
V VF+ KY Y + S+A + I + P L ++ K + +L +
Sbjct: 193 VLVFEGSDQLKYPYEGNINSLASNDEVRTHKIRMDYPKLDKSRLKI----KVPVLSLSRM 248
Query: 241 RTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLE----------EAFFIQN 290
++P+++LF ALG+ D+ I+E IC+D D +M ++ +++ + ++
Sbjct: 249 DCDVPVVLLFVALGYENDQKIVEAICFDENDNEMYNIVTTAIQANECTTTEDARRWLGEH 308
Query: 291 QQYIGKRGATVGVTR--EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLC 348
+ K G V+ +K+ + E L+K++LPH+GT +F KA + G++ + L
Sbjct: 309 SKKTNKEGVIEIVSENIQKLQRDGTEKLKKDLLPHIGTDNF--ESKAQFLGYMTNHFLSV 366
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAI 408
G+R DDRDH KR+ + G L+ LF+ +++ R+ +QK + + K + +
Sbjct: 367 YTGKRNGDDRDHLARKRMLMTGGLMMELFKNSLKRMMKTARAQLQKQLSSNKALEYAKPL 426
Query: 409 KAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLA 460
TIT +L TGNW Q +R GV+QVL+ LT+ S Y K
Sbjct: 427 SFPTITTDFTKALGTGNWPQPGGKESRHGVAQVLSRLTFTSALAYLRKISSPVEGKRKTQ 486
Query: 461 KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIG 499
KPRQLHN+QWG +CPAETPEG++CGLVK L+LM IT+
Sbjct: 487 KPRQLHNTQWGYICPAETPEGESCGLVKMLSLMAQITVA 525
>gi|340053396|emb|CCC47686.1| putative DNA-directed RNA polymerase II subunit 2 [Trypanosoma
vivax Y486]
Length = 1186
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 183/531 (34%), Positives = 283/531 (53%), Gaps = 47/531 (8%)
Query: 9 EEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH 68
+E + E E+ W +IS++F EKGLV QQ+DS+++F + + ++ R +SQ
Sbjct: 27 QEYDSAEVDSEDVWEIISSFFREKGLVHQQIDSYNDFLLR-IPRMARSLLEVVPRQDSQF 85
Query: 69 NPGQQSD---------FAEIYLSKPMMTESDG----ETATLFLKAARLRNLTYSAPLYVD 115
PG Q D ++ + P E+ G E LF RLR++TY A V
Sbjct: 86 EPGMQLDVEPDQYRLSLEDVVVGNPS-HETSGFSRQEMHPLFPNECRLRDMTYDANAQVT 144
Query: 116 VTKRVIKKGHDGE-----------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFI 164
+ RV + + +PIML+S C L + L L ECP+D+GGYFI
Sbjct: 145 LGIRVYRSREEQPYRTFLQNMELGRIPIMLKSIRCNLLYKDEDELPRLNECPHDQGGYFI 204
Query: 165 INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSA 224
ING+EKVL+AQE+ + NHVY F + + + E+ S+ E P T + M + +
Sbjct: 205 INGTEKVLVAQERQAANHVYAFTRPK----GLLCEIKSIVEGSLNKPRTFQIIMPYKKTG 260
Query: 225 KGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEE 284
G + + + + IP+ +LFRAL +D +IL+ + D +D M+E+LR S+E+
Sbjct: 261 PGHGY-ENLLCRVAQMDELIPLFVLFRALDMGSDREILQTVVPDLKDAAMLEMLRGSMED 319
Query: 285 A----FFIQNQQ--YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYF 338
A F +++ +IGKR +RE + + A+ +L +++LPH+G + K +
Sbjct: 320 ASTLQIFTRDEALWFIGKRLGRQD-SRENLQREAQGLLMRDLLPHMGVDCTADRGKCLFI 378
Query: 339 GHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK-CVD 397
G+++HRLLL ALGRR + DRD G+KR+D+AG LL ++ ++ V
Sbjct: 379 GYMVHRLLLLALGRREDTDRDFLGHKRIDVAGALLTFQLNHFLVQVRKEMSKTVHDYSTS 438
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFT----- 452
G V+ + ++ IT G++ LATGN+G + + GVSQ LN LTY+S+ +
Sbjct: 439 RGGVVSFAKILHSRLITDGMRRCLATGNFGDLKSGNIKTGVSQTLNRLTYSSSLSNLRRI 498
Query: 453 ---YYLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGS 500
S K +PR LH +QWG +CP ETPEG + GL+KNLALM I+ GS
Sbjct: 499 QNPISASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLISRGS 549
>gi|45358924|ref|NP_988481.1| DNA-directed RNA polymerase subunit beta'' [Methanococcus
maripaludis S2]
gi|45047790|emb|CAF30917.1| DNA-directed RNA polymerase subunit B [Methanococcus maripaludis
S2]
Length = 499
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 177/523 (33%), Positives = 277/523 (52%), Gaps = 59/523 (11%)
Query: 20 EAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEI 79
E+ V+ A+F+E LV+ +DS+D+F +N +Q I+DE +E ++ G + F +
Sbjct: 2 ESRVVVDAFFKENSLVKHHIDSYDDFVKNKIQRIIDEVTGVE----TEIKGGYKVSFGNV 57
Query: 80 YLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE---------- 129
++KP+ E+DG + AR+RNL YSAPLY+++ V +GEE
Sbjct: 58 RVTKPINKEADGSVKPITPMEARIRNLAYSAPLYLEMIPTV----GEGEEEKVLSPVEVY 113
Query: 130 ---VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVF 186
+P+ML S C L S + L + GE D GYFI+NGSEK ++AQE + N +
Sbjct: 114 IGELPVMLGSEICHLCGKSAEELIKYGEDTQDPLGYFIVNGSEKAVVAQEDLIPNRIICE 173
Query: 187 KKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPI 246
K + NK +A+V S F + + G ++ + P + + IP+
Sbjct: 174 KVEKNNKVVDIAKVFSTRHG--------FRALCTVERNPDG----LLNVSFPGMPSTIPL 221
Query: 247 IILFRALGFTADEDILEHICYDFQDTQMMEL---LRPSLEEAFFIQNQ---QYIGKRGAT 300
+IL RALG +D +I+E I + T +M+L L+ + EE + ++IGKR A
Sbjct: 222 VILMRALGAESDREIIELISD--EPTVVMQLIANLQEAREEHAINTTEDALEHIGKRVAP 279
Query: 301 VGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDH 360
G +E +K A+ IL +LPH+G K Y G + + LG R EDD+DH
Sbjct: 280 -GQPKEYKLKRAETILCNYLLPHMGVESEKLGAKCKYLGRMAKNSIELYLGLRVEDDKDH 338
Query: 361 YGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYS 420
Y NKRL LAG L+ LFR F +L D++ +++ K+ ++Q A+++ +T ++++
Sbjct: 339 YSNKRLKLAGDLMEDLFRHSFNQLIKDIKYQLERQAIRNKEPSIQAAVRSDVLTERMRHA 398
Query: 421 LATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNSQW 470
+ATGNW G R GVSQ+L+ +Y +T + ++ P R LH +QW
Sbjct: 399 MATGNW-----VGGRTGVSQLLDRTSYLATVSQL--RRVVSPLSRSQPHFEARDLHATQW 451
Query: 471 GMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
G +CP+ETPEG CGLVKNLA+M +T ++E L+E G
Sbjct: 452 GKICPSETPEGPNCGLVKNLAVMCKVTTDEGDDSVIELLKELG 494
>gi|348551951|ref|XP_003461792.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cavia
porcellus]
Length = 1102
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 184/532 (34%), Positives = 277/532 (52%), Gaps = 61/532 (11%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
+T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P
Sbjct: 21 STVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLK 76
Query: 76 FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEV 130
+ IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +
Sbjct: 77 YLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRM 136
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
PIMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 137 PIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR- 195
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIIL 249
K A A V S + SRTS Y+ H TL +IPI I+
Sbjct: 196 --KGAVGASVTSSTHEKK-----------SRTSMAVKQGRFYLRHNTL---SEDIPIAII 239
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGV 303
F+A+G +D++I++ I + ++M PSLEE F Q Q +YIG + V
Sbjct: 240 FKAMGVESDQEIVQMIG---TEERVMAAFGPSLEECQKSQIFTQMQALKYIGNK-----V 291
Query: 304 TREKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 292 RRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNK 350
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKT 412
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQ 410
Query: 413 ITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQ 464
IT G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR
Sbjct: 411 ITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRS 470
Query: 465 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
L SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 471 LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>gi|340624671|ref|YP_004743124.1| DNA-directed RNA polymerase subunit B'' [Methanococcus maripaludis
X1]
gi|339904939|gb|AEK20381.1| DNA-directed RNA polymerase subunit B'' [Methanococcus maripaludis
X1]
Length = 499
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 177/523 (33%), Positives = 277/523 (52%), Gaps = 59/523 (11%)
Query: 20 EAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEI 79
E+ V+ A+F+E LV+ +DS+D+F +N +Q I+DE +E ++ G + F +
Sbjct: 2 ESRVVVDAFFKENSLVKHHIDSYDDFVKNKIQRIIDEVTGVE----TEIKGGYKVSFGNV 57
Query: 80 YLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE---------- 129
++KP+ E+DG + AR+RNL YSAPLY+++ V +GEE
Sbjct: 58 RVTKPINKEADGSVKPITPMEARIRNLAYSAPLYLEMIPTV----GEGEEEKVLSPVEVY 113
Query: 130 ---VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVF 186
+P+ML S C L S + L + GE D GYFI+NGSEK ++AQE + N +
Sbjct: 114 IGELPVMLGSEICHLCGKSAEELIKYGEDVQDPLGYFIVNGSEKAVVAQEDLIPNRIICE 173
Query: 187 KKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPI 246
K + NK +A+V S F + + G ++ + P + + IP+
Sbjct: 174 KVEKNNKVVDIAKVFSTRHG--------FRALCTVERNPDG----LLNVSFPGMPSTIPL 221
Query: 247 IILFRALGFTADEDILEHICYDFQDTQMMEL---LRPSLEEAFFIQNQ---QYIGKRGAT 300
+IL RALG +D +I+E I + T +M+L L+ + EE + ++IGKR A
Sbjct: 222 VILMRALGAESDREIIELISD--EPTVVMQLIANLQEAREEHAINTTEDALEHIGKRVAP 279
Query: 301 VGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDH 360
G +E +K A+ IL +LPH+G K Y G + + LG R EDD+DH
Sbjct: 280 -GQPKEYKLKRAETILCNYLLPHMGVESEKLGAKCKYLGRMAKNSIELYLGLRVEDDKDH 338
Query: 361 YGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYS 420
Y NKRL LAG L+ LFR F +L D++ +++ K+ ++Q A+++ +T ++++
Sbjct: 339 YSNKRLKLAGDLMEDLFRHSFNQLIKDIKYQLERQAIRNKEPSIQAAVRSDVLTERMRHA 398
Query: 421 LATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNSQW 470
+ATGNW G R GVSQ+L+ +Y +T + ++ P R LH +QW
Sbjct: 399 MATGNW-----VGGRTGVSQLLDRTSYLATVSQL--RRVVSPLSRSQPHFEARDLHATQW 451
Query: 471 GMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
G +CP+ETPEG CGLVKNLA+M +T ++E L+E G
Sbjct: 452 GKICPSETPEGPNCGLVKNLAVMCKVTTDEGDDSVIELLKELG 494
>gi|167385143|ref|XP_001737225.1| DNA-directed RNA polymerase II subunit RPB2 [Entamoeba dispar
SAW760]
gi|165900064|gb|EDR26512.1| DNA-directed RNA polymerase II subunit RPB2, putative [Entamoeba
dispar SAW760]
Length = 1170
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 173/519 (33%), Positives = 271/519 (52%), Gaps = 44/519 (8%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI-RPESQHNPGQQSDFA 77
++ W +I A+F+E GLV+QQL S++ F + I ++ IEI E +
Sbjct: 13 DQFWYLIDAHFKENGLVKQQLSSYNNFIKKVRDVITSDTTKIEISNAEVLGISANDEEEH 72
Query: 78 EIYLSKPM-----MTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGH------- 125
I L+ P+ ++ +A+LF ARLR+LTY+ L V + K G
Sbjct: 73 TIVLTDPIFHFPKVSTGSKASASLFPHEARLRSLTYACQLEVKAKDTIRKNGTEEITTVP 132
Query: 126 --DGEEVPIMLRSSYCTLYQN-SQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNH 182
D +P ML+S C L + +Q ++ EC +++GGYFII GSEKV+IAQEKM+ N
Sbjct: 133 KIDIASIPSMLKSDVCRLKRCVTQPSMISKDECSFEQGGYFIIKGSEKVVIAQEKMAPNT 192
Query: 183 VYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV--PMLSRTSAKGGSSGQYIHATLPYI 240
V VF+ KY Y + S+A + I + P L ++ K + TL +
Sbjct: 193 VLVFEGSDQLKYPYEGNINSLASNDEVRTHKIRMDYPKLDKSRLKI----KVPVLTLSRM 248
Query: 241 RTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLE----------EAFFIQN 290
++P+++LF ALG+ D+ I+E IC+D D +M ++ +++ + ++
Sbjct: 249 DCDVPVVLLFVALGYENDQKIVEAICFDENDNEMYNIVTTAIQANECTTTEDARRWLGEH 308
Query: 291 QQYIGKRGATVGVTR--EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLC 348
+ K G V+ +K+ + E L+K++LPH+GT +F KA + G++ + L
Sbjct: 309 SKKTNKEGVIEIVSENIQKLQRDGTEKLKKDLLPHIGTDNF--ESKAQFLGYMTNHFLSV 366
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAI 408
G+R DDRDH KR+ + G L+ LF+ +++ R+ +QK + + K + +
Sbjct: 367 YTGKRNGDDRDHLARKRMLMTGGLMMELFKNSLKRMMKTARAQLQKQLSSNKTLEYAKPL 426
Query: 409 KAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLA 460
TIT +L TGNW Q +R GV+QVL+ LT+ S Y K
Sbjct: 427 SFPTITSDFTKALGTGNWPQPGGKESRHGVAQVLSRLTFTSALAYLRKISSPVEGKRKTQ 486
Query: 461 KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIG 499
KPRQLHN+QWG +CPAETPEG++CGLVK L+LM IT+
Sbjct: 487 KPRQLHNTQWGYICPAETPEGESCGLVKMLSLMAQITVA 525
>gi|403275974|ref|XP_003929693.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Saimiri
boliviensis boliviensis]
Length = 1133
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 183/531 (34%), Positives = 276/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 196 -KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVIIF 240
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 241 KAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 292
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 293 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 351
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 352 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 412 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 471
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 472 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>gi|417405955|gb|JAA49663.1| Putative rna polymerase i second largest subunit [Desmodus
rotundus]
Length = 1133
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 183/531 (34%), Positives = 276/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 196 -KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVIIF 240
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 241 KAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 292
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 293 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 351
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 352 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 412 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 471
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 472 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>gi|402887513|ref|XP_003907136.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
[Papio anubis]
Length = 1133
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 183/531 (34%), Positives = 276/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 196 -KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVIIF 240
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 241 KAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 292
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 293 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 351
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 352 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 412 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 471
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 472 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>gi|332241688|ref|XP_003270010.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
[Nomascus leucogenys]
Length = 1133
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 183/531 (34%), Positives = 276/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 196 -KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVIIF 240
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 241 KAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 292
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 293 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 351
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 352 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 412 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 471
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 472 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>gi|26333219|dbj|BAC30327.1| unnamed protein product [Mus musculus]
Length = 551
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 183/531 (34%), Positives = 275/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 196 -KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVIIF 240
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 241 KAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 292
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 293 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 351
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 352 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K + PR L
Sbjct: 412 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKESGPRSL 471
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 472 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVED 522
>gi|270305046|gb|ACZ71461.1| RNA polymerase II second largest subunit [Metzgeria furcata var.
ulvula]
Length = 156
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 131/155 (84%), Positives = 142/155 (91%), Gaps = 4/155 (2%)
Query: 228 SSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF 287
SSGQYI ATLPYIRTEIPII++FRALGF AD+DIL+HICYDF DT MMELLRPSLEEAF
Sbjct: 1 SSGQYIRATLPYIRTEIPIIVIFRALGFVADKDILQHICYDFNDTSMMELLRPSLEEAFV 60
Query: 288 IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIH 343
IQNQQ YIGKRG+TVGVTR+K IKYAKEILQKEMLPHVG G+FCETK+AY+FG+IIH
Sbjct: 61 IQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQKEMLPHVGVGEFCETKRAYFFGYIIH 120
Query: 344 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 378
RLLLCALGRRAEBDRDHY NK LDLAGPLLGGLFR
Sbjct: 121 RLLLCALGRRAEBDRDHYXNKXLDLAGPLLGGLFR 155
>gi|31873396|emb|CAD97689.1| hypothetical protein [Homo sapiens]
Length = 1133
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 183/531 (34%), Positives = 276/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 196 -KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVIIF 240
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 241 KAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 292
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 293 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 351
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 352 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 412 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 471
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 472 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>gi|238908503|ref|NP_060552.4| DNA-directed RNA polymerase III subunit RPC2 isoform 1 [Homo
sapiens]
gi|388454304|ref|NP_001253862.1| DNA-directed RNA polymerase III subunit RPC2 [Macaca mulatta]
gi|114646699|ref|XP_001161567.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 3
[Pan troglodytes]
gi|301784547|ref|XP_002927687.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
[Ailuropoda melanoleuca]
gi|395744767|ref|XP_003778156.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
[Pongo abelii]
gi|397525258|ref|XP_003832591.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
[Pan paniscus]
gi|29428029|sp|Q9NW08.2|RPC2_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC2;
Short=RNA polymerase III subunit C2; AltName: Full=C128;
AltName: Full=DNA-directed RNA polymerase III 127.6 kDa
polypeptide; AltName: Full=DNA-directed RNA polymerase
III subunit B
gi|28277230|gb|AAH46238.1| Polymerase (RNA) III (DNA directed) polypeptide B [Homo sapiens]
gi|119618186|gb|EAW97780.1| polymerase (RNA) III (DNA directed) polypeptide B, isoform CRA_a
[Homo sapiens]
gi|158256702|dbj|BAF84324.1| unnamed protein product [Homo sapiens]
gi|355564641|gb|EHH21141.1| hypothetical protein EGK_04143 [Macaca mulatta]
gi|355786484|gb|EHH66667.1| hypothetical protein EGM_03706 [Macaca fascicularis]
gi|380814556|gb|AFE79152.1| DNA-directed RNA polymerase III subunit RPC2 isoform 1 [Macaca
mulatta]
gi|410213674|gb|JAA04056.1| polymerase (RNA) III (DNA directed) polypeptide B [Pan troglodytes]
gi|410252446|gb|JAA14190.1| polymerase (RNA) III (DNA directed) polypeptide B [Pan troglodytes]
gi|410301480|gb|JAA29340.1| polymerase (RNA) III (DNA directed) polypeptide B [Pan troglodytes]
gi|410336371|gb|JAA37132.1| polymerase (RNA) III (DNA directed) polypeptide B [Pan troglodytes]
Length = 1133
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 183/531 (34%), Positives = 276/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 196 -KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVIIF 240
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 241 KAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 292
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 293 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 351
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 352 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 412 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 471
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 472 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>gi|354486330|ref|XP_003505334.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Cricetulus
griseus]
gi|344253234|gb|EGW09338.1| DNA-directed RNA polymerase III subunit RPC2 [Cricetulus griseus]
Length = 1133
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 183/531 (34%), Positives = 276/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 196 -KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVIIF 240
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 241 KAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 292
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 293 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 351
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 352 DDRDYYGNKRLELAGQLLALLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 412 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 471
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 472 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVED 522
>gi|46195739|ref|NP_081699.1| DNA-directed RNA polymerase III subunit RPC2 [Mus musculus]
gi|51704303|sp|P59470.2|RPC2_MOUSE RecName: Full=DNA-directed RNA polymerase III subunit RPC2;
Short=RNA polymerase III subunit C2; AltName: Full=C128;
AltName: Full=DNA-directed RNA polymerase III 127.6 kDa
polypeptide; AltName: Full=DNA-directed RNA polymerase
III subunit B
gi|45829714|gb|AAH68143.1| Polymerase (RNA) III (DNA directed) polypeptide B [Mus musculus]
Length = 1133
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 183/531 (34%), Positives = 276/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 196 -KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVIIF 240
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 241 KAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 292
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 293 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 351
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 352 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 412 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 471
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 472 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVED 522
>gi|426225175|ref|XP_004006743.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Ovis
aries]
Length = 1133
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 183/531 (34%), Positives = 276/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 196 -KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVIIF 240
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 241 KAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 292
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 293 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 351
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 352 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 412 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 471
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 472 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>gi|71404154|ref|XP_804809.1| DNA-directed RNA polymerase II subunit 2 [Trypanosoma cruzi strain
CL Brener]
gi|70867961|gb|EAN82958.1| DNA-directed RNA polymerase II subunit 2, putative [Trypanosoma
cruzi]
Length = 617
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 182/525 (34%), Positives = 284/525 (54%), Gaps = 47/525 (8%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
+ E+ W +IS++F EKGLV QQ+DS+++F + + +I R + Q PG Q+
Sbjct: 33 DIDSEDIWEIISSFFREKGLVHQQIDSYNDFLLR-IPRMARSLLEIVPRQDEQFEPGTQT 91
Query: 75 D---------FAEIYLSKP---MMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
+ ++ + P + S E LF RLR+LTY A V + RV +
Sbjct: 92 ETEPDQYRLSLEDVVIGNPSHEVSGFSRREMHPLFPNECRLRDLTYDANAQVTLGIRVYR 151
Query: 123 KGHDGE-----------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKV 171
+ +PIML+S C L + L L ECP+D+GGYF+I+G+EKV
Sbjct: 152 SREEQPYRTFLQNMELGRIPIMLKSMRCNLQNKDEDELPRLNECPHDQGGYFVISGTEKV 211
Query: 172 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSG- 230
LIAQE+ + NHVY F +++ + E+ S+ E P T+ + M + KG G
Sbjct: 212 LIAQERQAANHVYAFSRQK----GLLCEIKSIVEGSLNKPRTLQILMPYK--KKGPGHGY 265
Query: 231 QYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----F 286
+ + + + IP+ +LFRAL +D++IL+ + D +D M+E+LR S+E+A
Sbjct: 266 ENLLCRVAQMDELIPLFVLFRALDMGSDKEILQTVVPDLKDAAMLEMLRGSMEDASTLQI 325
Query: 287 FIQNQQ--YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
F +++ +IGKR +RE + + A+ +L +++LPH+G + K + G+++HR
Sbjct: 326 FTRDEALWFIGKRLGKQD-SRENLQRDAQGLLMRDLLPHMGVDCAADRSKCLFIGYMVHR 384
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK-CVDNGKDVN 403
LLL ALGRR + DRD G+KR+D+AG LL ++ ++ V + G V+
Sbjct: 385 LLLLALGRREDTDRDFLGHKRIDVAGALLTFQLNQFLVQVRKEMAKTVHDYSTNRGGVVS 444
Query: 404 LQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY--------L 455
+ ++ IT GL+ LATGN+G + + GV+Q LN LTY+S+ +
Sbjct: 445 FGRILHSRLITDGLRRCLATGNFGDMKSGNIKTGVAQTLNRLTYSSSLSNLRRIQNPIPA 504
Query: 456 SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGS 500
S K KPR LH +QWG +CP ETPEG + GL+KNLALM I+ GS
Sbjct: 505 SSKATKPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLISRGS 549
>gi|300798312|ref|NP_001178807.1| DNA-directed RNA polymerase III subunit RPC2 [Rattus norvegicus]
Length = 1133
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 183/531 (34%), Positives = 276/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 196 -KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVIIF 240
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 241 KAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 292
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 293 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 351
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 352 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 412 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 471
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 472 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVED 522
>gi|296212778|ref|XP_002752985.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Callithrix
jacchus]
Length = 1133
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 183/531 (34%), Positives = 276/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 196 -KGAVGASVPSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVIIF 240
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 241 KAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 292
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 293 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 351
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 352 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 412 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 471
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 472 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>gi|150401220|ref|YP_001324986.1| DNA-directed RNA polymerase subunit beta'' [Methanococcus aeolicus
Nankai-3]
gi|150013923|gb|ABR56374.1| RNA polymerase beta subunit [Methanococcus aeolicus Nankai-3]
Length = 510
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 173/525 (32%), Positives = 278/525 (52%), Gaps = 56/525 (10%)
Query: 20 EAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEI 79
E+ ++ +F+E LV ++S+++F +N++Q+++DE+A IE ++ G + F ++
Sbjct: 2 ESRIIVDEFFKENSLVEHHINSYNKFVENSIQKVIDEAAPIE----AEVKGGFKVKFGKV 57
Query: 80 YLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE----------- 128
+ KP+ E+DG ++ AR+RNL+YSAPLY+++T ++ G D E
Sbjct: 58 RVGKPINKEADGSVKEIYPVEARIRNLSYSAPLYLEITP-IMGGGEDEEGNKYEVEEGET 116
Query: 129 ------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNH 182
E+P+ML S C L S+ L ++GE D GYFI+NGSEK ++AQE + N
Sbjct: 117 VEAYIGELPVMLGSIICHLNGKSEDELVKMGEDARDPMGYFIVNGSEKAVVAQEDLIPNR 176
Query: 183 VYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRT 242
+ K + K Y+A+V S F + + G ++ + P +
Sbjct: 177 ILCEKVEKTGKPVYIAKVFSTRHG--------FRALCAVEKHDDGR----LNVSFPGMSG 224
Query: 243 EIPIIILFRALGFTADEDILEHICYD-FQDTQMMELLRPSLEEAFFIQNQ---QYIGKRG 298
IP++IL +ALG D + + I D Q++ + + EE I + +YIGKR
Sbjct: 225 NIPLVILLKALGAENDSAVFKIISEDPAVSMQLIANILETREEHQVITREDALEYIGKRV 284
Query: 299 ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDR 358
A G +E +K A+ IL +LPH+G +K Y G + + LG R EDD+
Sbjct: 285 AP-GQPKEYRLKRAETILCNYLLPHMGVKKENLFEKCIYLGRMAKNAIELYLGLRVEDDK 343
Query: 359 DHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLK 418
DHY NKRL LAG L+ LFR F +L D++ +++ K ++Q A+++ +T ++
Sbjct: 344 DHYANKRLKLAGDLMEDLFRYSFNQLNKDMKYQLERQAIRNKSPSIQAAVRSDVLTERIR 403
Query: 419 YSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNS 468
+++ATGNW G R GVSQ+L+ +Y +T + +L P R LH +
Sbjct: 404 HAMATGNW-----VGGRTGVSQLLDRTSYLATVSQL--RRLVSPLSRSQPHFEARDLHAT 456
Query: 469 QWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
QWG +CP+ETPEG CGLVKN+A+M IT I++ L+E G
Sbjct: 457 QWGKICPSETPEGPNCGLVKNIAVMCEITTQEQDDKIIDLLKESG 501
>gi|351713401|gb|EHB16320.1| DNA-directed RNA polymerase III subunit RPC2 [Heterocephalus
glaber]
Length = 1133
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 183/532 (34%), Positives = 278/532 (52%), Gaps = 61/532 (11%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
+T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P
Sbjct: 21 STVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLK 76
Query: 76 FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEV 130
+ IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +
Sbjct: 77 YLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRM 136
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
PIMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 137 PIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR- 195
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIIL 249
K A A V S + SRT+ Y+ H TL +IPI+I+
Sbjct: 196 --KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVII 239
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGV 303
F+A+G +D++I++ I + ++M PSLEE F Q Q +YIG + V
Sbjct: 240 FKAMGVESDQEIVQMIG---TEERVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----V 291
Query: 304 TREKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 292 RRQRMWGGGPKKTKIEEARELLACTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNK 350
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKT 412
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQ 410
Query: 413 ITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQ 464
IT G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR
Sbjct: 411 ITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYVSALGMMTRISSQFEKTRKVSGPRS 470
Query: 465 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
L SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 471 LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLAGNLGVED 522
>gi|170037347|ref|XP_001846520.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167880429|gb|EDS43812.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 928
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 173/529 (32%), Positives = 275/529 (51%), Gaps = 50/529 (9%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
+ T E+ W ++ A+ + KGLV+Q +DSF+ F ++ IV + +++ S +P
Sbjct: 19 QKTLEDKWKLVPAFLQIKGLVKQHIDSFNYFINVDIKNIVRANDEVK----SDADPCFYL 74
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEE 129
+ + + P + E T + RLR++TY+AP+ VD+ T+RV++ G
Sbjct: 75 KYLNVAIGMPDVEEGFNNTKSTTPHECRLRDMTYAAPITVDIEYTRGTQRVVRNGLLIGR 134
Query: 130 VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
+PIMLRSS C L S+ L+++ ECP D GGYF+I G+EKV++ QE++S N K
Sbjct: 135 MPIMLRSSNCVLSGKSEYELSKVNECPLDPGGYFVIRGTEKVILIQEQVSWN------KM 188
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
Y V + + + + TI + + K S + EIP+ I+
Sbjct: 189 LTEDYNNVIQCQVTSSTHEKKSRTILLSKHGKYYLKHNSMTE-----------EIPVAII 237
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ-------QYIGKRG 298
F+A+G +D++I++ + D T+ + L PSL EA + Q + + I KR
Sbjct: 238 FKAMGIASDQEIMQLVGID---TETQKRLAPSLLEAANHKVYTQQRALEYMGSKLIAKRF 294
Query: 299 ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDR 358
T + A+++L +L HV +F KA Y +I R++ L R A DDR
Sbjct: 295 TTAATKYKTTADEARDLLATTILAHVPVNNFNFQVKAIYVALMIRRVMAAELDRSAVDDR 354
Query: 359 DHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGG 416
D+YGNKRL+LAG LL +F LF++ +++ K + K ++A I+ G
Sbjct: 355 DYYGNKRLELAGSLLSLMFEDLFKRFNWELKMIADKNIPKIKAAQFDIVKHMRAALISTG 414
Query: 417 LKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNS 468
L+ +++TGNW RAGV+QVL+ L+Y S + + K++ PR L S
Sbjct: 415 LETAISTGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPS 474
Query: 469 QWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
QWGM+CP++TPEG+ACGLVKNLALM +IT P++ G E+
Sbjct: 475 QWGMLCPSDTPEGEACGLVKNLALMTHITTEVDEEPVIRLAYNSGVEDI 523
>gi|291389954|ref|XP_002711473.1| PREDICTED: DNA-directed RNA polymerase III B [Oryctolagus
cuniculus]
Length = 1133
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 183/531 (34%), Positives = 275/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++RVI+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRVIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 196 -KGTVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVIIF 240
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 241 KAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 292
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 293 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 351
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 352 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 412 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 471
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 472 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>gi|410965427|ref|XP_003989249.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC2 [Felis catus]
Length = 1133
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 182/532 (34%), Positives = 276/532 (51%), Gaps = 61/532 (11%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
+T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P
Sbjct: 21 STVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLK 76
Query: 76 FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEV 130
+ IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +
Sbjct: 77 YLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRM 136
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
PIMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 137 PIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR- 195
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIIL 249
K A A V S + RT+ Y+ H TL +IPI+I+
Sbjct: 196 --KGAVGASVTSSTHEKK-----------XRTNMAVKQGRFYLRHNTL---SEDIPIVII 239
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGV 303
F+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 240 FKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----V 291
Query: 304 TREKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 292 RRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNK 350
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKT 412
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQ 410
Query: 413 ITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQ 464
IT G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR
Sbjct: 411 ITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRS 470
Query: 465 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
L SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 471 LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>gi|294495208|ref|YP_003541701.1| DNA-directed RNA polymerase, subunit B' [Methanohalophilus mahii
DSM 5219]
gi|292666207|gb|ADE36056.1| DNA-directed RNA polymerase, subunit B' [Methanohalophilus mahii
DSM 5219]
Length = 545
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 166/494 (33%), Positives = 264/494 (53%), Gaps = 44/494 (8%)
Query: 27 AYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMM 86
AYF +V+ +DS+++F + +Q+++DE IE E + I + KP++
Sbjct: 9 AYFTRDKIVQHHIDSYNKFLSSGLQKVIDEQHLIETDIEDIY-----VKLGRIRVEKPVV 63
Query: 87 TESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE-------EVPIMLRSSYC 139
E+DG L+ ARLRNL+YSAPL+++++ V+K G + E ++P+M++S C
Sbjct: 64 KEADGAIENLYPNEARLRNLSYSAPLFLEMS--VVKGGEESEPREAKIGQLPVMIKSEIC 121
Query: 140 TLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAE 199
L + + E GE P D GGYFI+NG+E+V++ E ++ N + +Y E
Sbjct: 122 NLVGIDDEDMIEHGEDPLDPGGYFIVNGTERVVMTLEDLAPNKILA---EIGERYGDRIE 178
Query: 200 VCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADE 259
V + SQ R + V R + + + P I I I L RALG DE
Sbjct: 179 VSKVF-SQRRGYRALVVVERGRKA--------LLEVSFPSISGRINFITLLRALGIETDE 229
Query: 260 DILEHICYDFQDTQMMELLRPSLEEAFFIQNQQYIGKRGATV--GVTREKMIKYAKEILQ 317
D+++ + D ++M+ + +LEE+ ++ + K G V G E +K A ++
Sbjct: 230 DVVKTVS---TDPEIMKFMFENLEESEVDTVEEAVEKIGMRVASGQASEYQVKRANYVID 286
Query: 318 KEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF 377
+ +LPH+G KA++ G + ALGRR+ DD+DHY NKRL L G LL LF
Sbjct: 287 RYLLPHLGNEPEDRVAKAHFLGRMAESCFELALGRRSADDKDHYSNKRLKLTGDLLEDLF 346
Query: 378 RTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAG 437
R F +LT DV+ +++ +++N+ ++A +T L++ LATGNW G R+G
Sbjct: 347 RVAFNRLTRDVKYQLERANMRNRELNVSTLVRADVLTDRLQHPLATGNW-----VGGRSG 401
Query: 438 VSQVLNCLTYASTFTYYL----SWKLAKP----RQLHNSQWGMMCPAETPEGQACGLVKN 489
VSQ+L+ Y ST ++ A+P R LH++QWG +CP+ETPEG CGLVKN
Sbjct: 402 VSQLLDRTDYISTLSHLRRVISPLSRAQPHFEARDLHSTQWGRLCPSETPEGPNCGLVKN 461
Query: 490 LALMVYITIGSAAY 503
A MV ++ G+ +
Sbjct: 462 FAQMVELSTGANDF 475
>gi|24429617|gb|AAM18214.1| RNA polymerase III subunit RPC2 [Homo sapiens]
Length = 1133
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 183/531 (34%), Positives = 275/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 196 -KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVIIF 240
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I +M PSLEE F Q Q +YIG + V
Sbjct: 241 KAMGVESDQEIVQMIG---TAEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 292
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 293 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 351
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 352 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 412 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 471
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 472 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>gi|327272386|ref|XP_003220966.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
[Anolis carolinensis]
Length = 1132
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 179/527 (33%), Positives = 275/527 (52%), Gaps = 52/527 (9%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + I S +P
Sbjct: 21 NTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKIT----SDADPMWYLK 76
Query: 76 FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEV 130
+ IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +
Sbjct: 77 YLNIYVGTPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPVGRM 136
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
PIMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R+
Sbjct: 137 PIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRK 196
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI--HATLPYIRTEIPIII 248
A V S E ++R T+ G++ H TL +IPI I
Sbjct: 197 GTVGASVTS--STHEKKSRTNITV-------------KQGRFYLKHNTL---SEDIPIAI 238
Query: 249 LFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIG---KRGA 299
+F+A+G +D++I++ I + +M PSLEE F Q Q +Y+G +R
Sbjct: 239 IFKAMGVESDQEIVQMIG---TEEHVMAAFAPSLEECQKAQIFTQMQALKYLGNKVRRQR 295
Query: 300 TVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRD 359
G ++ ++ A+E+L +L HV +F K Y ++ R++L A G DDRD
Sbjct: 296 MWGGPKKTKMEEARELLATTILAHVPVKEFNFRSKCIYTAVMVRRVIL-AQGDNKVDDRD 354
Query: 360 HYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGL 417
+YGNKRL+LAG LL LF LF+K +++ + + + ++ IT G+
Sbjct: 355 YYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQVIPKQRAAQFDVVKHMRQDQITNGM 414
Query: 418 KYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQ 469
+++TGNW R GV+QVL+ L+Y S + + K++ PR L SQ
Sbjct: 415 VNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQ 474
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
WGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 475 WGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVED 521
>gi|407045039|gb|EKE42974.1| DNA-directed RNA polymerase, beta subunit domain containing protein
[Entamoeba nuttalli P19]
Length = 1170
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 173/519 (33%), Positives = 271/519 (52%), Gaps = 44/519 (8%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI-RPESQHNPGQQSDFA 77
E+ W +I A+F+E GLV+QQL S++ F + I ++ IEI E +
Sbjct: 13 EQFWYLIDAHFKENGLVKQQLSSYNNFIKKVRDVITSDTTKIEISNAEVLGISANDEEEH 72
Query: 78 EIYLSKPM-----MTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGH------- 125
I L+ P+ ++ +A+LF ARLR+LTY+ L V + K G
Sbjct: 73 TIVLTDPIFHFPKVSTGSKASASLFPHEARLRSLTYACQLEVKAKDIIRKNGAEEITTVP 132
Query: 126 --DGEEVPIMLRSSYCTLYQN-SQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNH 182
D +P ML+S C L + +Q ++ EC +++GGYFII GSEKV+IAQEKM+ N
Sbjct: 133 KIDIASIPSMLKSDVCRLKRCVTQPSMISKDECSFEQGGYFIIKGSEKVVIAQEKMAPNT 192
Query: 183 VYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV--PMLSRTSAKGGSSGQYIHATLPYI 240
V VF+ KY Y + S+A + I + P L ++ K + +L +
Sbjct: 193 VLVFEGSDQLKYPYEGNINSLASNDEVRTHKIRMDYPKLDKSRLKI----KVPVLSLSRM 248
Query: 241 RTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLE----------EAFFIQN 290
++P+++LF ALG+ D+ I+E IC+D D +M ++ +++ + ++
Sbjct: 249 DCDVPVVLLFVALGYENDQKIVEAICFDENDNEMYNIVTTAIQANECTTTEDARRWLGEH 308
Query: 291 QQYIGKRGATVGVTR--EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLC 348
+ K G V+ +K+ + E L+K++LPH+GT +F KA + G++ + L
Sbjct: 309 SKKTNKEGVIEIVSENIQKLQRDGTEKLKKDLLPHIGTDNF--ESKAQFLGYMTNHFLSV 366
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAI 408
G+R DDRDH KR+ + G L+ LF+ +++ R+ +QK + + K + +
Sbjct: 367 YTGKRNGDDRDHLARKRMLMTGGLMMELFKNSLKRMMKTARAQLQKQLSSNKALEYAKPL 426
Query: 409 KAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLA 460
TIT +L TGNW Q +R GV+QVL+ LT+ S Y K
Sbjct: 427 SFPTITTDFTKALGTGNWPQPGGKESRHGVAQVLSRLTFTSALAYLRKISSPVEGKRKTQ 486
Query: 461 KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIG 499
KPRQLHN+QWG +CPAETPEG++CGLVK L+LM IT+
Sbjct: 487 KPRQLHNTQWGYICPAETPEGESCGLVKMLSLMAQITVA 525
>gi|440907714|gb|ELR57824.1| DNA-directed RNA polymerase III subunit RPC2 [Bos grunniens mutus]
Length = 1133
Score = 278 bits (710), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 182/531 (34%), Positives = 275/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 196 -KGTVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVIIF 240
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 241 KAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 292
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 293 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 351
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 352 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 412 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 471
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 472 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>gi|149742988|ref|XP_001499030.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Equus
caballus]
Length = 1133
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 182/531 (34%), Positives = 275/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 196 -KGTVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVIIF 240
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 241 KAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 292
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 293 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 351
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 352 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 412 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 471
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 472 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>gi|395819924|ref|XP_003783328.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Otolemur
garnettii]
Length = 1133
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 182/531 (34%), Positives = 276/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 196 -KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVIIF 240
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + ++ PSLEE F Q Q +YIG + V
Sbjct: 241 KAMGVESDQEIVQMIG---TEEHVIAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 292
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 293 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 351
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 352 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 412 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 471
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 472 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>gi|407852465|gb|EKG05946.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma
cruzi]
Length = 1186
Score = 277 bits (709), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 187/547 (34%), Positives = 291/547 (53%), Gaps = 58/547 (10%)
Query: 4 EEERLEEDEEEETTQ-----------EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQE 52
E E ED E+ T E+ W +IS++F EKGLV QQ+DS+++F +
Sbjct: 11 ETEEFVEDGEDYTVDGEHAGSTDIDSEDIWEIISSFFREKGLVHQQIDSYNDFLLR-IPR 69
Query: 53 IVDESADIEIRPESQHNPGQQSD---------FAEIYLSKP---MMTESDGETATLFLKA 100
+ ++ R + Q PG Q++ ++ + P + S E LF
Sbjct: 70 MARSLLEVVPRQDEQFEPGTQTETEPDQYRLSLEDVVIGNPSHEVSGFSRHEMHPLFPNE 129
Query: 101 ARLRNLTYSAPLYVDVTKRVIKKGHDGE-----------EVPIMLRSSYCTLYQNSQKAL 149
RLR+LTY A V + RV + + +PIML+S C L + L
Sbjct: 130 CRLRDLTYDANAQVTLGIRVYRSREEQPYRTFLQNMELGRIPIMLKSMRCNLQNKDEDEL 189
Query: 150 TELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNR 209
L ECP+D+GGYF+I+G+EKVLIAQE+ + NHVY F +++ + E+ S+ E
Sbjct: 190 PRLNECPHDQGGYFVISGTEKVLIAQERQAANHVYAFSRQK----GLLCEIKSIVEGSLN 245
Query: 210 PPSTIFVPMLSRTSAKGGSSG-QYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYD 268
P T+ + M + KG G + + + + IP+ +LFRAL +D++IL+ + D
Sbjct: 246 KPRTLQILMPYK--KKGPGHGYENLLCRVAQMDELIPLFVLFRALDMGSDKEILQTVVPD 303
Query: 269 FQDTQMMELLRPSLEEA----FFIQNQQ--YIGKRGATVGVTREKMIKYAKEILQKEMLP 322
+D M+E+LR S+E+A F +++ +IGKR +RE + + A+ +L +++LP
Sbjct: 304 LKDAAMLEMLRGSMEDASTLQIFTRDEALWFIGKRLGKQD-SRENLQRDAQGLLMRDLLP 362
Query: 323 HVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFR 382
H+G + K + G+++HRLLL ALGRR + DRD G+KR+D+AG LL
Sbjct: 363 HMGVDCAADRSKCLFIGYMVHRLLLLALGRREDTDRDFLGHKRIDVAGALLTFQLNQFLV 422
Query: 383 KLTGD-VRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQV 441
++ + V++ + G V+ + ++ IT GL+ LATGN+G + + GV+Q
Sbjct: 423 QVRKEMVKTVHDYSTNRGGVVSFGRILHSRLITDGLRRCLATGNFGDMKSGNIKTGVAQT 482
Query: 442 LNCLTYASTFT--------YYLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 493
LN LTY+S+ + S K KPR LH +QWG +CP ETPEG + GL+KNLALM
Sbjct: 483 LNRLTYSSSLSNLRRIQNPISASSKATKPRNLHCTQWGYICPVETPEGGSIGLLKNLALM 542
Query: 494 VYITIGS 500
I+ GS
Sbjct: 543 CLISRGS 549
>gi|73969955|ref|XP_531760.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Canis
lupus familiaris]
Length = 1133
Score = 277 bits (709), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 182/531 (34%), Positives = 275/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 196 -KGTVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVIIF 240
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 241 KAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 292
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 293 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 351
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 352 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 412 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 471
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 472 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>gi|300795995|ref|NP_001179718.1| DNA-directed RNA polymerase III subunit RPC2 [Bos taurus]
gi|296487427|tpg|DAA29540.1| TPA: polymerase (RNA) III (DNA directed) polypeptide B [Bos taurus]
Length = 1133
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 182/531 (34%), Positives = 275/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 196 -KGTVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVIIF 240
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 241 KAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 292
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 293 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 351
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 352 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 412 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 471
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 472 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>gi|449481884|ref|XP_002196633.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2
[Taeniopygia guttata]
Length = 1130
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 175/530 (33%), Positives = 271/530 (51%), Gaps = 58/530 (10%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P
Sbjct: 19 NTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLK 74
Query: 76 FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEV 130
+ IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +
Sbjct: 75 YLNIYVGTPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRM 134
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
PIMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R+
Sbjct: 135 PIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRK 194
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIR-----TEIP 245
T+ + S T K + + Y+R +IP
Sbjct: 195 ---------------------GTVGASVTSSTHEKKSRTNMVVKQGRFYLRHNTLSEDIP 233
Query: 246 IIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIG---K 296
I I+F+A+G +D++I++ I + +M PSLEE F Q Q +YIG +
Sbjct: 234 IAIIFKAMGVESDQEIVQMIG---TEEHVMAAFAPSLEECQKAQIFTQMQALKYIGNKVR 290
Query: 297 RGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAED 356
R G ++ ++ A+E+L +L HV +F K Y ++ R++L A G D
Sbjct: 291 RQRMWGGPKKTKMEEARELLASTILTHVLVKEFNFRAKCIYTAVMVRRVIL-AQGENKVD 349
Query: 357 DRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTIT 414
DRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ IT
Sbjct: 350 DRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQVIPKQRAAQFDVVKHMRQDQIT 409
Query: 415 GGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLH 466
G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 410 NGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQ 469
Query: 467 NSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 470 PSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLASNLGVED 519
>gi|301110510|ref|XP_002904335.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide
[Phytophthora infestans T30-4]
gi|262096461|gb|EEY54513.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide
[Phytophthora infestans T30-4]
Length = 1166
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 184/547 (33%), Positives = 281/547 (51%), Gaps = 59/547 (10%)
Query: 8 LEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQ 67
+EE E+ ++ ++ W ++ + + +GLV+Q +DSFD F M+ IV A+ +R S
Sbjct: 18 MEELEKPVSSVKDKWKLLPYFLQLRGLVKQHIDSFDYFTSVDMRNIVRAQANNVVR--SD 75
Query: 68 HNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
+P + +I L P + E +A++ RLR+ TY+AP+YV V R K
Sbjct: 76 ADPKFFLQYTDIQLGAPSIDEEAFVSASVTPHQCRLRDRTYAAPVYVSVRYRRGNKIVTN 135
Query: 128 EEV-----PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNH 182
+V PIMLRSS C L S+ AL +L ECPYD GGYFI+ G EKV++ E++S N
Sbjct: 136 NKVLIGRIPIMLRSSRCVLAGKSEAALAKLKECPYDPGGYFIVRGVEKVVLIHEQLSKNR 195
Query: 183 VYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRT 242
V + + + N A + S E ++R + IF+ R K S G +
Sbjct: 196 VIIEEDGKHNVCASITS--STHERKSR--TNIFLNK-GRVYLKSNSFG-----------S 239
Query: 243 EIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGK 296
+IPI+I+FR +G +D++I+ + ++ + + L S EEA F Q Q +YIG
Sbjct: 240 DIPIVIVFRGMGVESDQEIVSLVG---SESDICDALSASFEEASDLKVFTQQQALEYIGS 296
Query: 297 R-------GATVGVTR---------EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGH 340
+ GA G R ++ A+ L +L HV +F K+ Y H
Sbjct: 297 KMNALTKIGAMGGRHRGGAGRPQNDRNLVDAARSALANLVLNHVPCDNFNFRLKSIYVAH 356
Query: 341 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV---D 397
I+ R+L R DD+D+YGNKRL+LAG LL LF LF++ D++ + +
Sbjct: 357 IVRRILFTDKDRTRLDDKDYYGNKRLELAGQLLSLLFEDLFKRFNSDLKRQADMVLSKPN 416
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF------ 451
++ ++ TIT G ++L+TGNW RAGV+ VL+ L+Y S
Sbjct: 417 RASVFDILKCVRTDTITQGFYHALSTGNWTLKRFRMDRAGVTHVLSRLSYMSALGMMTRI 476
Query: 452 --TYYLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFL 509
+ + K++ PR L SQWGM+CPA+TPEG+ACGLVKNLAL+ ++T PI
Sbjct: 477 SSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLCHVTSDEEPAPIKRLC 536
Query: 510 EEWGTEN 516
+ G +
Sbjct: 537 FDLGVTD 543
>gi|387191409|gb|AFJ68613.1| DNA-directed RNA polymerase III subunit RPC2 [Nannochloropsis
gaditana CCMP526]
gi|422292684|gb|EKU19986.1| DNA-directed RNA polymerase III subunit RPC2 [Nannochloropsis
gaditana CCMP526]
Length = 1197
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 172/551 (31%), Positives = 287/551 (52%), Gaps = 57/551 (10%)
Query: 3 MEEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI 62
+ ++ E+ + T + W ++ + + +GL+RQ +DSFD F +++IV+ +++ E+
Sbjct: 30 LADQSQEDVSKPVTDVADKWKLLPHFLQLRGLMRQHIDSFDFFVNREIKDIVNAASNREL 89
Query: 63 RPESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT----- 117
R E+ +P + ++++ +P + + ++ + RLR+ TYSAP+ VDV
Sbjct: 90 RSEA--DPKFWLRYTDVHVGEPSVDDDAYVSSRVTPFQCRLRDCTYSAPITVDVRYTRGR 147
Query: 118 KRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
+ V+K+G +PIMLRS C L S+ L E ECPYD GGYFI+ G E+V++ QE+
Sbjct: 148 QIVVKRGVMIGRIPIMLRSCKCILAGRSEAELAEKKECPYDPGGYFIVKGVERVILMQEQ 207
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATL 237
+S N V + + + N A + S + + R S IFV +G ++
Sbjct: 208 LSKNRVIIEEDNKGNVSASITS--STHDRKGR--SNIFV-----------KNGTKVYLKN 252
Query: 238 PYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI------QNQ 291
+ ++PI+++ +A+G +D++I +C +M++ PSLEE + + Q
Sbjct: 253 NLLGDDVPIVVVLKAMGMQSDQEI---VCMVGDSPEMLDAFAPSLEEPYHLGICTQAQAL 309
Query: 292 QYIGKRGATVGVTR---------------EKMIKYAKEILQKEMLPHVGTGDFCETKKAY 336
+YIG + R + A+E+L +L HV +F K
Sbjct: 310 RYIGAKIRNTTQNRGPGPSGMGFAFYRRASSPEEEAREVLASVILNHVPVINFDFRTKCI 369
Query: 337 YFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
+ H+I R+LL R DD+D+YGNKRL+LAG LL LF LF++L ++ + +
Sbjct: 370 FVCHVIRRVLLTHRDRSQLDDKDYYGNKRLELAGQLLSLLFEDLFKRLNVQLKKQADQGL 429
Query: 397 ---DNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF-- 451
+ + ++ I+ TIT G ++ATGNW R GV+QVL L+Y S
Sbjct: 430 SKPNRTQSFDVIKCIRTDTITNGFIQAIATGNWKLQRFRMDRQGVTQVLTRLSYISCLGM 489
Query: 452 ------TYYLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
+ + K++ PR L SQWGM+CPA+TPEG+ACGLVKNLAL+ ++T + PI
Sbjct: 490 MTRINSQFEKTRKVSGPRSLQPSQWGMICPADTPEGEACGLVKNLALLAHVTTDEESEPI 549
Query: 506 LEFLEEWGTEN 516
+ + G E+
Sbjct: 550 RKLCFDLGIED 560
>gi|125843259|ref|XP_690811.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
[Danio rerio]
Length = 1130
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 179/524 (34%), Positives = 275/524 (52%), Gaps = 48/524 (9%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + I S +P +
Sbjct: 20 TVEEKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKIT----SDADPMWYLKY 75
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 76 LNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 135
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + ++L ECP D GGYFI+ G EKV++ QE++S N + V + R+
Sbjct: 136 IMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVDQDRKG 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFR 251
A V S E ++R T + R K H TL + PI I+F+
Sbjct: 196 TVGASVTS--STHEKKSR---TNMIVKQGRFYLK--------HNTL---SEDAPIAIIFK 239
Query: 252 ALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIG---KRGATVG 302
A+G +D++I++ I + +M PSLEE F Q Q +YIG +R G
Sbjct: 240 AMGVESDQEIVQMIG---TEEHVMAAFAPSLEECQKAQIFTQTQALRYIGNKVRRQRMWG 296
Query: 303 VTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYG 362
++ ++ A+E+L +L HV +F K Y ++ R++L A G DDRD+YG
Sbjct: 297 GPKKTKMEEARELLASTILTHVPVKEFNFRAKCIYLAVMVRRVIL-AQGDNKVDDRDYYG 355
Query: 363 NKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGLKYS 420
NKRL+LAG LL LF LF+K +++ + + + ++ IT G+ +
Sbjct: 356 NKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQFDVVKHMRQDQITNGMVNA 415
Query: 421 LATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQWGM 472
++TGNW R GV+QVL+ L++ S + + K++ PR L SQWGM
Sbjct: 416 ISTGNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGM 475
Query: 473 MCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 476 LCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVED 519
>gi|126339649|ref|XP_001365927.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2
[Monodelphis domestica]
Length = 1133
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 181/531 (34%), Positives = 275/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 196 -KGTVGASVTSSTHEKK-----------SRTNIAVKQGRFYLRHNTL---SEDIPIVIIF 240
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 241 KAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 292
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M ++ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 293 RQRMWGGGPKKTKMEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 351
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 352 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 412 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 471
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 472 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>gi|407404199|gb|EKF29761.1| DNA-directed RNA polymerase III subunit, putative, partial
[Trypanosoma cruzi marinkellei]
Length = 1194
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 181/524 (34%), Positives = 280/524 (53%), Gaps = 45/524 (8%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
+ E+ W +IS++F EKGLV QQ+DS+++F + + +I R + Q PG Q+
Sbjct: 41 DIDSEDIWEIISSFFREKGLVHQQIDSYNDFLLR-IPRMARSLLEIVPRQDEQFEPGTQT 99
Query: 75 D---------FAEIYLSKP---MMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
+ ++ + P S E LF RLR+LTY A V + RV +
Sbjct: 100 ETEPDQYRLSLEDVVIGNPSHEFSGFSRHEMHPLFPNECRLRDLTYDANAQVTLGIRVYR 159
Query: 123 KGHDGE-----------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKV 171
+ +PIML+S C L + L L ECP+D+GGYF+I+G+EKV
Sbjct: 160 SREEQPYRTFLQNMELGRIPIMLKSMRCNLQNKDEDELPRLNECPHDQGGYFVISGTEKV 219
Query: 172 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ 231
LIAQE+ + NHVY F +++ + E+ S+ E P T+ + M + G +
Sbjct: 220 LIAQERQAANHVYAFSRQK----GLLCEIKSIVEGSLNKPRTLQILMPYKKKGPGHGY-E 274
Query: 232 YIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FF 287
+ + + IP+ +LFRAL +D++IL+ + D +D M+E+LR S+E+A F
Sbjct: 275 NLLCRVAQMDELIPLFVLFRALDMGSDKEILQTVVPDLKDAAMLEMLRGSMEDASTLQIF 334
Query: 288 IQNQQ--YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRL 345
+++ +IGKR +RE + + A+ +L +++LPH+G + K + G+++HRL
Sbjct: 335 TRDEALWFIGKRLGKQD-SRENLQREAQALLMRDLLPHMGVDCAADRGKCLFIGYMVHRL 393
Query: 346 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN-GKDVNL 404
LL ALGRR + DRD G+KR+D+AG LL ++ ++ V N G V
Sbjct: 394 LLLALGRREDTDRDFLGHKRIDVAGALLTFQLNQFLVQVRKEMIKTVHDYSTNRGGVVGF 453
Query: 405 QFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFT--------YYLS 456
+ ++ IT GL+ LATGN+G + + GV+Q LN LTY+S+ + S
Sbjct: 454 GRILHSRLITDGLRRCLATGNFGDMKSGNIKTGVAQTLNRLTYSSSLSNLRRIQNPISAS 513
Query: 457 WKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGS 500
K KPR LH +QWG +CP ETPEG + GL+KNLALM I+ GS
Sbjct: 514 SKATKPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLISRGS 557
>gi|363727935|ref|XP_416307.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Gallus
gallus]
Length = 1132
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 174/527 (33%), Positives = 270/527 (51%), Gaps = 58/527 (11%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 24 EEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKYLN 79
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVPIM 133
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +PIM
Sbjct: 80 IYVGTPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIM 139
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
LRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R+
Sbjct: 140 LRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRK--- 196
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIR-----TEIPIII 248
T+ + S T K + + Y+R +IPI I
Sbjct: 197 ------------------GTVGASVTSSTHEKKSRTNMVVKQGRFYLRHNTLSEDIPIAI 238
Query: 249 LFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIG---KRGA 299
+F+A+G +D++I++ I + +M PSLEE F Q Q +YIG +R
Sbjct: 239 IFKAMGVESDQEIVQMIG---TEEHVMAAFAPSLEECQKAQIFTQMQALKYIGNKVRRQR 295
Query: 300 TVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRD 359
G ++ ++ A+E+L +L HV +F K Y ++ R++L A G DDRD
Sbjct: 296 MWGGPKKTKMEEARELLASTILTHVLVKEFNFRAKCIYTAVMVRRVIL-AQGENKVDDRD 354
Query: 360 HYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGL 417
+YGNKRL+LAG LL LF LF+K +++ + + + ++ IT G+
Sbjct: 355 YYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQVIPKQRAAQFDVVKHMRQDQITNGM 414
Query: 418 KYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQ 469
+++TGNW R GV+QVL+ L+Y S + + K++ PR L SQ
Sbjct: 415 VNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQ 474
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
WGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 475 WGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLASNLGVED 521
>gi|395538371|ref|XP_003771156.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2
[Sarcophilus harrisii]
Length = 1174
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 181/531 (34%), Positives = 275/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 63 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 118
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 119 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 178
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 179 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 236
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 237 -KGTVGASVTSSTHEKK-----------SRTNIAVKQGRFYLRHNTL---SEDIPIVIIF 281
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 282 KAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 333
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M ++ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 334 RQRMWGGGPKKTKMEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 392
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 393 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 452
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 453 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 512
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 513 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 563
>gi|312374784|gb|EFR22267.1| hypothetical protein AND_15508 [Anopheles darlingi]
Length = 1134
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 175/525 (33%), Positives = 270/525 (51%), Gaps = 50/525 (9%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
EE W ++ A+ + KGLV+Q +D+F+ F +++IV + +++ S +P +
Sbjct: 23 EEKWKLVPAFLQVKGLVKQHIDAFNYFINVDIKKIVQANQEVK----SDADPCFYLKYLN 78
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVPIM 133
+++ KP + E T + RLR++TYSAP+ VDV T+RV++ G +PIM
Sbjct: 79 VHVGKPDVEEGFNNTKSTTPHECRLRDMTYSAPITVDVEYTRGTQRVVRNGLLIGRMPIM 138
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
LRSS C L S L+++ ECP D GGYFII G+EKV++ QE++S N K
Sbjct: 139 LRSSNCILNGKSDYELSQVNECPMDPGGYFIIRGTEKVILIQEQLSWN------KMITED 192
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
Y + + + + + TI R K S + EIP+ I+ +A+
Sbjct: 193 YNGLIQCQVTSSTHEKKSRTILYSKHGRYYLKHNSMTE-----------EIPVAIILKAM 241
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ-------QYIGKRGATVG 302
G +D++I++ + D Q+TQ + PSL EA + Q + + I KR T
Sbjct: 242 GVASDQEIMQLVGID-QETQ--KRFAPSLLEAAKHKVYTQQRALEYMGSKLIAKRFTTAA 298
Query: 303 VTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYG 362
A+++L +L HV F KA Y +I R++ L R A DDRD+YG
Sbjct: 299 TKYRTTADEARDLLATTILAHVPVRSFNFQVKAIYVALMIRRVMAAELDRSAVDDRDYYG 358
Query: 363 NKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGLKYS 420
NKRL+LAG LL +F L ++ +++ K + K ++ IT GL+ +
Sbjct: 359 NKRLELAGSLLSLMFEDLLKRFNWELKMIADKNIPKIKAAQFDVGKHMREALITSGLETA 418
Query: 421 LATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQWGM 472
++TGNW RAGV+QVL+ L+Y S + + K++ PR L SQWGM
Sbjct: 419 ISTGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGM 478
Query: 473 MCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
+CP++TPEG+ACGLVKNLALM +IT P++ G E+
Sbjct: 479 LCPSDTPEGEACGLVKNLALMTHITTEVDEEPVIRLAYNAGVEDI 523
>gi|119618187|gb|EAW97781.1| polymerase (RNA) III (DNA directed) polypeptide B, isoform CRA_b
[Homo sapiens]
Length = 1177
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 181/531 (34%), Positives = 274/531 (51%), Gaps = 69/531 (12%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R+
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKG 197
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
A V +MA Q R Y+ H TL +IPI+I+F
Sbjct: 198 AVGASVTRT-NMAVKQGR---------------------FYLRHNTL---SEDIPIVIIF 232
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 233 KAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 284
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 285 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 343
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 344 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 403
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 404 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 463
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 464 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 514
>gi|440296149|gb|ELP88990.1| DNA-directed RNA polymerase II subunit RPB2, putative [Entamoeba
invadens IP1]
Length = 1180
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 174/547 (31%), Positives = 274/547 (50%), Gaps = 46/547 (8%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEF--------NQNTMQEIVDESADIEI 62
DE + W +I +F E GLV+QQL SF+ F +T + V+ S + +
Sbjct: 11 DEAGRVKPQWFWYLIEEHFRENGLVKQQLSSFNNFVKRVQDIVKTDTFKFEVNNSDTLRV 70
Query: 63 RPESQHNPGQQSDFAEIYLSKPMMTESDGETAT--LFLKAARLRNLTYSAPLYVDVTKRV 120
P + + +F E P + S +F AR+R LTY++ L ++V +
Sbjct: 71 NPADEES--HTLEFDETKYRYPQIKTSPNSNVKEKIFPHEARIRGLTYASELKINVKDTI 128
Query: 121 IKKGH----------DGEEVPIMLRSSYCTLYQNSQ-KALTELGECPYDEGGYFIINGSE 169
+ G D +P ML+S C L + + + EC +++GGYF++ GSE
Sbjct: 129 YRGGKLVDEKTSDFFDLASIPAMLKSKICRLVSIVKLNDIIQSDECQFEQGGYFVVKGSE 188
Query: 170 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
KV+IAQEKMS N V VF+ KY + + S+A + I +
Sbjct: 189 KVVIAQEKMSPNTVLVFEGSDMAKYPFEGNINSLAMNDEVRSHKIRMDFPKNQEMNKDLK 248
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI- 288
+ T+ + ++P+++LF ALG+ DE I++ IC+D +D +M ++ +++ +
Sbjct: 249 VKVPMLTMSRMMCDVPLVLLFVALGYETDEKIVDAICFDEKDNEMYNIVTTAIQANEYTT 308
Query: 289 --QNQQYIG---KRGATVG---VTR--EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYF 338
+ +++IG KR G VT EKM + L+ ++LPH+G +F KAY+
Sbjct: 309 VEKAREWIGRNSKRSNKEGDEIVTENIEKMRRDGTSKLKTDLLPHIGVDNF--ESKAYFL 366
Query: 339 GHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN 398
G++ + L G+R DDRDH KR+ + G L+ LF+ +KLT R+ +Q V +
Sbjct: 367 GYMTNHFLSVYTGKRNGDDRDHLARKRMLMTGGLMMELFKNALKKLTKYARNKIQDIVSH 426
Query: 399 GKDVNLQFA--IKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
K N+ + +K IT K +L+TGNW Q R GV+QVLN +T+ S Y
Sbjct: 427 KKSDNIDYGKVYNSKIITDDCKKALSTGNWPQPGGKEARHGVAQVLNRITFTSALAYLRK 486
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
K KPRQLHN+QWG +CPAETPEG+ CGLVK L+LM IT+ + E
Sbjct: 487 ISSPVEGKRKTQKPRQLHNTQWGYICPAETPEGEQCGLVKMLSLMAQITVALPLQNVQEI 546
Query: 509 LEEWGTE 515
++ ++
Sbjct: 547 KDQLNSQ 553
>gi|435852038|ref|YP_007313624.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit
[Methanomethylovorans hollandica DSM 15978]
gi|433662668|gb|AGB50094.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit
[Methanomethylovorans hollandica DSM 15978]
Length = 538
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 165/490 (33%), Positives = 261/490 (53%), Gaps = 44/490 (8%)
Query: 27 AYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMM 86
AYF +V+ +DS+++F ++ +Q I++E IE E + I + KP++
Sbjct: 4 AYFTRDKIVQHHIDSYNKFLESGLQNIINEQGIIETDIEDVY-----IKLGNIRVEKPVV 58
Query: 87 TESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV-------PIMLRSSYC 139
E+DG L+ RLRNL+YSAP+++ ++ V++ + E V P+M++SS C
Sbjct: 59 KEADGAIEKLYPNEGRLRNLSYSAPIFLQMS--VVQGEEESEPVEAKIGQLPVMIKSSIC 116
Query: 140 TLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAE 199
L + ++K + + GE P D GGYFI+NG+E+V++ E ++ N + +Y + E
Sbjct: 117 NLVELNEKEMIDYGEDPLDPGGYFIVNGTERVVMTLEDLAPNKILT---EYGERYGDMIE 173
Query: 200 VCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADE 259
V + SQ R + V R S + + P I I I L RALG D+
Sbjct: 174 VAKVF-SQRRGYRALVVVERGRKS--------LLEVSFPSISGRINFITLMRALGVETDQ 224
Query: 260 DILEHICYDFQDTQMMELLRPSLEEAFFIQNQQYIGKRGATV--GVTREKMIKYAKEILQ 317
D++ + D ++M+ + +LEEA ++ I K G V G R+ +K A ++
Sbjct: 225 DLVNTVS---SDPEIMKFMLENLEEAEVATTREAIEKIGTRVAAGQARDYQMKRANYVMD 281
Query: 318 KEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF 377
+ +LPH+G KAY+ G + ALG+R+EDD+DHY NKRL L G L+ LF
Sbjct: 282 RYLLPHLGNEPKDRFAKAYFIGRMAESCFELALGKRSEDDKDHYSNKRLKLTGDLMEDLF 341
Query: 378 RTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAG 437
R F +L DV+ +++ +++N+ ++A +T L++ LATGNW G R G
Sbjct: 342 RVAFNRLARDVKYQLERANMRNRELNVVTLVRADVLTDRLQHPLATGNW-----VGGRTG 396
Query: 438 VSQVLNCLTYASTFTYYL----SWKLAKP----RQLHNSQWGMMCPAETPEGQACGLVKN 489
VSQ+L+ Y ST ++ A+P R LH +QWG +CP+ETPEG CGLVKN
Sbjct: 397 VSQLLDRTDYISTLSHLRRVISPLSRAQPHFEARDLHPTQWGRLCPSETPEGPNCGLVKN 456
Query: 490 LALMVYITIG 499
A MV ++ G
Sbjct: 457 FAQMVELSTG 466
>gi|145512048|ref|XP_001441946.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124409207|emb|CAK74549.1| unnamed protein product [Paramecium tetraurelia]
Length = 1214
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 180/557 (32%), Positives = 294/557 (52%), Gaps = 86/557 (15%)
Query: 12 EEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPG 71
E + ++ W V+ +F+ GLV QQ+ S++ F +N ++ + +R + Q+
Sbjct: 24 EHQRLDNDDIWKVLQMFFQTHGLVSQQIGSYESFVENVIKFVRGHEGTFVVRVKPQYKEE 83
Query: 72 QQSDFAEIYLSKPMMTES---------DGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
++ + YL + +T D +F ARLR+LTYS L +D+ + +
Sbjct: 84 ERQEAYLEYLYQFQITRCFMGKKNIHVDKFEEEIFPMIARLRDLTYSRQLKIDLEVTMQQ 143
Query: 123 KG-HDGE---------------EVPIMLRSSYCTLYQNSQKA-LTEL----GECPYDEGG 161
+ DG ++PIM+RS +C+L ++ + A L +L GEC +D+GG
Sbjct: 144 RNKRDGTIEEKSKQQFKGLPFFKLPIMVRSRFCSLQKDPKDAELIQLRIQNGECGFDQGG 203
Query: 162 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR 221
YFI+ GSEKV++AQE+++ N V VFK + NK +VAE+ S + + P +F L
Sbjct: 204 YFILRGSEKVIVAQERIANNVVLVFKSKIVNK-PWVAEIRSQPDLFSNP--NVFKVEL-- 258
Query: 222 TSAKGGSSGQYIHATLPYIRTE---------IPIIILFRALGFTADEDILEHICYDFQDT 272
+YI T P IR IP+ LFRALG ++D++ILE I Y+ +D
Sbjct: 259 ---------RYIQNT-PVIRCSVKQFNSTQGIPLFTLFRALGISSDQEILERIVYNLEDE 308
Query: 273 ---QMMELLRPSLEEAFFIQNQQ----YIGKRGATV-GVTREKMIKYAKEILQKEMLPHV 324
M+E+L SL+E ++++ +IG + E +I+ AK+++ K +LPH+
Sbjct: 309 FMGPMLEMLYGSLQEGGEYEDEELCLRWIGNKIKKAENQDPETLIQEAKKLINKNILPHI 368
Query: 325 GTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKL 384
G +KAY+ G+I+HRLL +LG+ +DDRDHYG KRLD+AG ++ G+F+T F +
Sbjct: 369 GVSTESRDRKAYFLGYIVHRLLNASLGKTDQDDRDHYGKKRLDMAGAMMMGVFKTSFEQF 428
Query: 385 TGDVRSYVQKCVDNGK--------------DVNLQFAIKAKTITGGLKYSLATGNWGQGN 430
+ + ++K ++ G+ +++ + I+ + +LATGNWG+
Sbjct: 429 KQNSKKALEKYINGGRRGRGQQTKIENMRQPDDIKSFFDGEQISKDIDNALATGNWGRSK 488
Query: 431 AAG-TRAGVSQVLNCLTYASTFTYYL---------SWKLAKPRQLHNSQWGMMCPAETPE 480
+ GV+Q L T +L KL+KPRQLHN+ +G +CPAETPE
Sbjct: 489 EGQVVKTGVAQTLKRETSLFATLSHLRRMNAPINPQMKLSKPRQLHNTHFGFICPAETPE 548
Query: 481 GQACGLVKNLALMVYIT 497
GQ G+VKNL+LM ++
Sbjct: 549 GQKIGIVKNLSLMTTVS 565
>gi|241614087|ref|XP_002407492.1| RNA polymerase III, putative [Ixodes scapularis]
gi|215502825|gb|EEC12319.1| RNA polymerase III, putative [Ixodes scapularis]
Length = 1141
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 178/540 (32%), Positives = 279/540 (51%), Gaps = 52/540 (9%)
Query: 3 MEEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEI 62
M+ + L++ +E T E W ++ A+ +GLVR +DSF+ F ++EIV + I
Sbjct: 18 MDTDSLQQPVKELT---EKWKLLPAFLSVQGLVRHHIDSFNHFINVEIKEIVRANEKIT- 73
Query: 63 RPESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----T 117
S +P + +I++ KP + E+ + RLR++TYSAP+ VD+ T
Sbjct: 74 ---SDADPQFYLKYLDIHIGKPDVEENCVASKATTPHECRLRDMTYSAPITVDIEYTRGT 130
Query: 118 KRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
+RV++ +PIMLRS+ C L + ++++ ECPYD GGYF++NG E+V++ QE+
Sbjct: 131 QRVVRGDFPIGRMPIMLRSANCILADKTHFQMSQMNECPYDPGGYFVVNGVERVILMQEQ 190
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATL 237
+S N + V + R K + +V S + SRT+ G G+Y +
Sbjct: 191 LSKNRMIVEEDR---KGGLMCQVTSSTHERK-----------SRTNV-GTKHGRY-YLKH 234
Query: 238 PYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ-- 291
+IPI I+F+ +G +D++I++ I ++ PSLEE F Q Q
Sbjct: 235 NCFTEDIPIAIVFKGMGLESDQEIVQMIG---SADSILSTFAPSLEECHRSQVFTQTQAL 291
Query: 292 QYIG-----KRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLL 346
+Y+G +R G R+ + A++IL +L HV + KA Y +I R++
Sbjct: 292 RYLGGKLKHRRMFFAGGPRKTPVDDARDILATTVLAHVPVEHYNFRVKAMYLALMIRRVI 351
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQF 406
R DDRD+YGNKRL+LAG LL LF LF++ +++ K + +
Sbjct: 352 EAQTNREMIDDRDYYGNKRLELAGSLLSLLFEDLFKRFNTELKLVADKTIPKVRATQFDV 411
Query: 407 A--IKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLS 456
++ IT GL S++TGNW R GV+QVL L+Y S + +
Sbjct: 412 VKYVRQDLITNGLVSSISTGNWTVKRFKMERIGVTQVLTRLSYISALGMMTRVNSQFEKT 471
Query: 457 WKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
K++ PR L SQ+GM+CP++TPEG+ACGLVKNLALM +IT PI+ L G E+
Sbjct: 472 RKVSGPRSLQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTDLEEAPIVRLLLNLGVED 531
>gi|326912147|ref|XP_003202415.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
[Meleagris gallopavo]
Length = 1129
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 178/522 (34%), Positives = 273/522 (52%), Gaps = 48/522 (9%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
+E W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 21 KEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKYLN 76
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVPIM 133
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +PIM
Sbjct: 77 IYVGTPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIM 136
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
LRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R+
Sbjct: 137 LRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGTV 196
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
A V S E ++R T V R + H TL +IPI I+F+A+
Sbjct: 197 GASVTS--STHEKKSR---TNLVVKQGRFYLR--------HNTL---SEDIPIAIIFKAM 240
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIG---KRGATVGVT 304
G +D++I++ I + +M PSLEE F Q Q +YIG +R G
Sbjct: 241 GVESDQEIVQMIG---TEEHVMAAFAPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGP 297
Query: 305 REKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNK 364
++ ++ A+E+L +L HV +F K Y ++ R++L A G DDRD+YGNK
Sbjct: 298 KKTKMEEARELLASTILTHVLVKEFNFRAKCIYTAVMVRRVIL-AQGENKVDDRDYYGNK 356
Query: 365 RLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGLKYSLA 422
RL+LAG LL LF LF+K +++ + + + ++ IT G+ +++
Sbjct: 357 RLELAGQLLSLLFEDLFKKFNSELKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAIS 416
Query: 423 TGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQWGMMC 474
TGNW R GV+QVL+ L+Y S + + K++ PR L SQWGM+C
Sbjct: 417 TGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLC 476
Query: 475 PAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
P++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 477 PSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLASNLGVED 518
>gi|288561073|ref|YP_003424559.1| DNA-directed RNA polymerase subunit B'' RpoB2 [Methanobrevibacter
ruminantium M1]
gi|288543783|gb|ADC47667.1| DNA-directed RNA polymerase subunit B'' RpoB2 [Methanobrevibacter
ruminantium M1]
Length = 520
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 166/516 (32%), Positives = 272/516 (52%), Gaps = 55/516 (10%)
Query: 20 EAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEI 79
E W ++ ++F++ +V + S+++F +N +Q I+D + I I E + + ++
Sbjct: 4 ETWGLVDSFFDKYDIVDHHIKSYNDFVENRIQNIIDITEPITIENEKGNYTLRT---GKL 60
Query: 80 YLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE-------EVPI 132
+ KP E+DG + ++ ARLRNL YSA +Y+++ + E E+P+
Sbjct: 61 TIEKPFTKEADGSKSMIYPTEARLRNLNYSAHMYLEMALHDNNSDEEEELENVYIGELPL 120
Query: 133 MLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN 192
ML+SS C L+ S + L + GE P D GGYFI+NGSE+ ++ E+++ N + + + +
Sbjct: 121 MLKSSICHLHGLSDEELVKRGEDPKDPGGYFIVNGSERAVVTMEEIAPNKIILERIDEIE 180
Query: 193 KYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRA 252
A V S+ F ++ K SG ++ + PY+ EIP++IL RA
Sbjct: 181 DRHAKAIVTSIKSG--------FRARITLEYKKPRKSGVFLRISFPYVPGEIPLVILLRA 232
Query: 253 LGFTADEDILEHICYDFQ-------DTQMMELLRPSL----------EEAFFIQNQ--QY 293
LG + D +I+ I DF D Q+ E E ++Q +Y
Sbjct: 233 LGLSTDGEIISKISDDFNFQMYIADDLQVSEKDLKLDSDLLLSLSNEERDEYLQKAAIKY 292
Query: 294 IGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRR 353
IG R A G+T E IK A++++ + +LPH+G KA Y + LL G+R
Sbjct: 293 IGNRVAK-GMTEEYRIKRAEDVIDRYLLPHMGIESDKRYDKAIYLAEMTEMLLQVIEGQR 351
Query: 354 AEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTI 413
D+DHY NKRL ++G L LFR F LT D+ +++ + GK+++++ A+++ +
Sbjct: 352 EPHDKDHYTNKRLRVSGDLTEDLFRVAFSSLTRDMSYRLERSLSRGKELSIKQAVRSDVL 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------R 463
T +K+++ATGNW G RAGVSQ+L+ ++Y +T ++ ++ P R
Sbjct: 412 TENIKHAIATGNW-----VGGRAGVSQLLDRVSYMATLSHL--RRVVSPLTRSQPHFEAR 464
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIG 499
LH +Q+G +CP ETPEG CGLVKNLALM I+ G
Sbjct: 465 DLHPTQFGKICPNETPEGPNCGLVKNLALMCKISEG 500
>gi|348667429|gb|EGZ07254.1| hypothetical protein PHYSODRAFT_340380 [Phytophthora sojae]
Length = 1158
Score = 274 bits (700), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 181/547 (33%), Positives = 278/547 (50%), Gaps = 59/547 (10%)
Query: 8 LEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQ 67
+EE E+ + ++ W ++ + + +GLV+Q +DSFD F M+ IV A+ +R S
Sbjct: 10 MEELEKPVKSVQDKWKLLPYFLQLRGLVKQHIDSFDYFTSVDMRNIVRAQANNVVR--SD 67
Query: 68 HNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
+P + +I L P + E +A++ RLR+ TY+AP+YV V R K
Sbjct: 68 ADPKFFLQYTDIQLGAPSIDEEAFVSASVTPHQCRLRDRTYAAPVYVSVRYRRGNKIVTN 127
Query: 128 EEV-----PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNH 182
+V PIMLRSS C L S+ AL +L ECPYD GGYFI+ G EKV++ E++S N
Sbjct: 128 NKVLIGRIPIMLRSSRCVLAGKSEAALAKLKECPYDPGGYFIVRGVEKVVLIHEQLSKNR 187
Query: 183 VYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRT 242
V + + + N A + S E ++R + IF+ R K S G +
Sbjct: 188 VIIEEDGKRNVCASITS--STHERKSR--TNIFLNK-GRVYLKSNSFG-----------S 231
Query: 243 EIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGK 296
+IPI+I+FR +G +D++I+ + + + + + S EEA F Q Q +YIG
Sbjct: 232 DIPIVIVFRGMGVESDQEIVSLVG---SEPDICDAMSASFEEASDLKVFTQQQALEYIGS 288
Query: 297 RGAT---VGVTR-------------EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGH 340
+ T +G ++ A+ L +L HV +F K+ Y H
Sbjct: 289 KMNTLTKIGAMGGRNRGGAGRPQQDRNLVDAARSALANLVLNHVPCENFNFRLKSIYVAH 348
Query: 341 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV---D 397
I+ R+L R DD+D+YGNKRL+LAG LL LF LF++ D++ + +
Sbjct: 349 IVRRILFTDKDRTRLDDKDYYGNKRLELAGQLLSLLFEDLFKRFNSDLKRQADMVLSKPN 408
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF------ 451
++ ++ TIT G ++L+TGNW RAGV+ VL+ L+Y S
Sbjct: 409 RASVFDIIKCVRTDTITQGFYHALSTGNWTLKRFRMDRAGVTHVLSRLSYMSALGMMTRI 468
Query: 452 --TYYLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFL 509
+ + K++ PR L SQWGM+CPA+TPEG+ACGLVKNLAL+ ++T PI
Sbjct: 469 SSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLCHVTSDEEPGPIKRLC 528
Query: 510 EEWGTEN 516
+ G +
Sbjct: 529 FDLGVTD 535
>gi|345326788|ref|XP_001508364.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2
[Ornithorhynchus anatinus]
Length = 1112
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 180/529 (34%), Positives = 274/529 (51%), Gaps = 61/529 (11%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
+E W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 3 QEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKYLN 58
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVPIM 133
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +PIM
Sbjct: 59 IYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIM 118
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
LRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R K
Sbjct: 119 LRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR---K 175
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILFRA 252
A A V S + SRT+ Y+ H TL +IPI I+F+A
Sbjct: 176 GAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIAIIFKA 221
Query: 253 LGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVTRE 306
+G +D++I++ I + +M PSLEE F Q Q +YIG + V R+
Sbjct: 222 MGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VRRQ 273
Query: 307 KM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDD 357
+M ++ A+E+L +L HV +F K Y ++ R++L A G DD
Sbjct: 274 RMWGGGPKKTKMEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDD 332
Query: 358 RDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITG 415
RD+YGNKRL+LAG LL LF LF+K +++ + + + ++ IT
Sbjct: 333 RDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITN 392
Query: 416 GLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHN 467
G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 393 GMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQP 452
Query: 468 SQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 453 SQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLANNLGVED 501
>gi|118364886|ref|XP_001015664.1| DNA-directed RNA polymerase, beta subunit family protein
[Tetrahymena thermophila]
gi|89297431|gb|EAR95419.1| DNA-directed RNA polymerase, beta subunit family protein
[Tetrahymena thermophila SB210]
Length = 1226
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 182/577 (31%), Positives = 302/577 (52%), Gaps = 84/577 (14%)
Query: 9 EEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH 68
+++ E Q++ W +I YF++ GL Q+ S++ F ++ ++ E IE+RP +
Sbjct: 18 DDELNENIDQDDCWKIIDEYFKDNGLCSHQIKSYNHFIESL--PLIMEDFKIEVRPTENY 75
Query: 69 ---NPGQQSDFAEIYLS-------KPMM------------------TESDGETATLFLKA 100
N +Q ++ + KP+ +S ++
Sbjct: 76 MNSNKKEQQIRSQTSYTLTFDRPRKPLPPQKFHMERTFGWGRRGQDAQSSSHAQKIYPMM 135
Query: 101 ARLRNLTYSAPLYVDVTKRVIKKGHDGEE-------------------VPIMLRSSYCTL 141
AR+ +L Y + + V K DG E +P+M++S YC+L
Sbjct: 136 ARISDLDYFVEIKIPVQLVRTIKHPDGTEQKELITSRDKNQNLITLFKLPVMVQSMYCSL 195
Query: 142 YQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVC 201
+ + + GEC +D+GGYFII GSEKV+IAQE+M+ N VYVF+++ P K ++AE+
Sbjct: 196 AGENLEGRIKHGECQFDQGGYFIIKGSEKVIIAQERMAFNFVYVFQQKDP-KMPWIAEIR 254
Query: 202 SMAESQNRPPSTIFVPMLSRTSAKGGSSGQY-IHATLPYIRTEIPIIILFRALG-FTADE 259
S+ + N S + + R G+Y ++A I +IPI +L +ALG +D+
Sbjct: 255 SIRDKTNAVQSKFALKLKLR-------DGEYQLYARCKLINEDIPIFVLLKALGCVESDK 307
Query: 260 DILEHICYDFQDT---QMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR--EKMIK 310
+++E I Y+ +D QMME+LR SL A N++ +IG R R ++ ++
Sbjct: 308 EMMERIFYNLKDPKNEQMMEMLRSSLLLAQHCNNKREALIFIGYRINATTNYRGSQEAMQ 367
Query: 311 YAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 370
A++ L+ +LPH+GT + KK ++ G++I +LL ALG+ EDDRDHYG KRLD+AG
Sbjct: 368 SAEDTLKLYLLPHIGTQESDNDKKLFFIGYMIQKLLNAALGKTQEDDRDHYGKKRLDMAG 427
Query: 371 PLLGGLFRTLFRKLTGDVRSYVQKCV-----DNGKDVNLQFAI-KAKTITGGLKYSLATG 424
L+ LF+ R + + +Q+ + D K +N+ I K I+ ++ +LATG
Sbjct: 428 ALISQLFKERLRIFQKNAKKNLQQKINDISRDAQKSLNVIVDIFDHKLISDHIRLALATG 487
Query: 425 NWGQ-GNAAGTRAGVSQVLNCLTYASTFTYYL---------SWKLAKPRQLHNSQWGMMC 474
NWGQ + + GV+QVL T ++ + KLA+PRQLHN+ +G++C
Sbjct: 488 NWGQTADGEVVKTGVAQVLKRDTSLFATMSHMRRVNAPMKSAAKLARPRQLHNTHYGLIC 547
Query: 475 PAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEE 511
PAETPEGQ G+VKNL+L+ +++G ++ L+ E+
Sbjct: 548 PAETPEGQKIGMVKNLSLLAQVSLGLSSQDNLKIQEQ 584
>gi|385805646|ref|YP_005842044.1| RNA Polymerase [Fervidicoccus fontis Kam940]
gi|383795509|gb|AFH42592.1| RNA Polymerase [Fervidicoccus fontis Kam940]
Length = 1141
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 184/520 (35%), Positives = 274/520 (52%), Gaps = 51/520 (9%)
Query: 3 MEEERLEEDEEEETTQ----EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESA 58
++EE E +++E E W + + EE+GL RQ LDS++ F + +QEI+DE
Sbjct: 5 IQEEGARESKKKEDLSYLDGEARWLLAKKFIEEQGLSRQHLDSYNRFVETMLQEIIDEQE 64
Query: 59 DIEIR-PESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT 117
IE PE + G+ I + KP+ E+DG + AR+RN+TY++P+Y+++T
Sbjct: 65 IIETAFPEVKFKLGK------IEVLKPVSREADGSEVEITPFEARVRNITYASPMYLEIT 118
Query: 118 ------KRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKV 171
+ + K + G+ +PIM++S L + S + L ++ E P D GGYFIING+EKV
Sbjct: 119 LVENGVESIKDKVYIGD-LPIMIKSKLDPLSKMSPEELIKINEDPDDPGGYFIINGTEKV 177
Query: 172 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ 231
+IAQE M TN V V + + + Y A+ S S + T + GG G+
Sbjct: 178 IIAQEDMVTNRVLVDEGKAGSNVLYTAKAISSTGSYRISVMMELHKDGTITISFGGVPGK 237
Query: 232 YIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ 291
+P IL RALGF D+DI+ + + ++ LL PSLE + I
Sbjct: 238 ------------LPFAILMRALGFEKDQDIVYAVSLN---PEVQSLLLPSLEASRSIATV 282
Query: 292 Q----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLL 347
YIG R A +G RE I+ AK+++ K PH+G+ KK ++ + + +L
Sbjct: 283 DDALDYIGTRVA-IGQVRENRIERAKQVIDKYFFPHLGSSPKDRRKKGFFLAQMANMILE 341
Query: 348 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA 407
+LG R DDRDHY NKRL LAG LL LFR F+ D +K + K +
Sbjct: 342 LSLGWREPDDRDHYANKRLKLAGDLLATLFRASFKNFVKDFNYQAEKVLTRSKRFKISSI 401
Query: 408 IKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKL 459
+++ +T ++++LATG W G + GVSQ+L+ + S ++ S L
Sbjct: 402 VRSDVMTERIRHALATGTW-----VGGKTGVSQLLDRTNWMSMLSHLRRVVSPLSRSQPL 456
Query: 460 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIG 499
K R LH +QWG MCP ETPEG CGLVKNL+L+ YIT+G
Sbjct: 457 FKARDLHGTQWGRMCPFETPEGPNCGLVKNLSLLTYITVG 496
>gi|336476451|ref|YP_004615592.1| RNA polymerase subunit beta [Methanosalsum zhilinae DSM 4017]
gi|335929832|gb|AEH60373.1| RNA polymerase beta subunit [Methanosalsum zhilinae DSM 4017]
Length = 533
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 168/491 (34%), Positives = 263/491 (53%), Gaps = 60/491 (12%)
Query: 34 LVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLS-------KPMM 86
+V+ +DS+++F Q +Q+I+DE IE +D +IYL KP++
Sbjct: 2 IVQHHIDSYNKFVQVGLQKIIDEQGIIE------------TDLEDIYLKLGKIRVEKPIV 49
Query: 87 TESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE-------EVPIMLRSSYC 139
E+DG L+ ARLRNL+YSAPLY++++ V+K + E ++P+M++S+ C
Sbjct: 50 KEADGAIERLYPNEARLRNLSYSAPLYLEMS--VVKGETETEPQETKIGQLPVMIKSNIC 107
Query: 140 TLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYV-FKKRQPNKYAYVA 198
L + + + + + GE P D GGYFI+NG+E+V++ E ++ N + F +R Y
Sbjct: 108 NLKELNDEEMVQSGEDPLDPGGYFIVNGTERVVMTLEDLAPNKILAEFSER----YGDSI 163
Query: 199 EVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTAD 258
EV + SQ R + V R + + + P I I I L RALG D
Sbjct: 164 EVAKVF-SQRRGYRALVVVERGRKA--------LLEVSFPSISGRINFITLMRALGIETD 214
Query: 259 EDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQYIGKRGATV--GVTREKMIKYAKEIL 316
EDI+ + D ++M+ + +LEEA ++ I K G+ V G + IK A ++
Sbjct: 215 EDIVNIVS---TDPEIMKFMLENLEEAEVGTREEAIEKIGSRVASGQATDYQIKRANYVI 271
Query: 317 QKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 376
+ +LPH+G KA++ G + AL RR+EDD+DHY NKRL L G L+ L
Sbjct: 272 DRYLLPHLGNAPTDRIPKAHFLGRMAESCFELALARRSEDDKDHYSNKRLKLTGDLMEDL 331
Query: 377 FRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRA 436
FR F +L+ D++ +++ +++N+ ++A +T L++ LATGNW G R
Sbjct: 332 FRVAFNRLSRDIKYQLERANMRNRELNVGTLVRADVLTDRLQHPLATGNW-----VGGRT 386
Query: 437 GVSQVLNCLTYASTFTYYL----SWKLAKP----RQLHNSQWGMMCPAETPEGQACGLVK 488
GVSQ+L+ Y ST ++ A+P R LH +QWG +CP+ETPEG CGLVK
Sbjct: 387 GVSQLLDRTDYISTLSHLRRVISPLSRAQPHFEARDLHPTQWGRLCPSETPEGPNCGLVK 446
Query: 489 NLALMVYITIG 499
N A MV ++ G
Sbjct: 447 NFAQMVELSTG 457
>gi|15669229|ref|NP_248034.1| DNA-directed RNA polymerase subunit beta'' [Methanocaldococcus
jannaschii DSM 2661]
gi|2500641|sp|Q58444.1|RPOB2_METJA RecName: Full=DNA-directed RNA polymerase subunit B''
gi|1591693|gb|AAB99043.1| DNA-directed RNA polymerase, subunit B'' (rpoB2)
[Methanocaldococcus jannaschii DSM 2661]
Length = 498
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 171/513 (33%), Positives = 275/513 (53%), Gaps = 48/513 (9%)
Query: 24 VISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSK 83
++ AYF+E GL+ Q++S+++F +N +Q+I+DE IE ++ G + +I + K
Sbjct: 7 LVDAYFKEHGLIDHQIESYNDFVENRLQKIIDEVGYIE----TEITGGYKVKLGKIKVGK 62
Query: 84 PMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE----------VPIM 133
P++ E+DG + AR+R+LTYS PLY+++T +I +G D E +P+M
Sbjct: 63 PVIKEADGSIRPITPMEARIRDLTYSVPLYLEMTP-IIGEGEDAREGETVEVYIGELPVM 121
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
L S C LY S++ L +LGE P D GYFIING+EKVLI QE + N + K + K
Sbjct: 122 LGSKICHLYGKSREELIDLGEDPEDPFGYFIINGTEKVLITQEDLIPNRILCEKAERSGK 181
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
VA+V S F + + G ++AT P + +IP++IL +AL
Sbjct: 182 IVDVAKVFSTRHG--------FRALCTVERHPDG----LLYATFPGMPGQIPLVILMKAL 229
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ---QYIGKRGATVGVTREKMIK 310
G D+DI+E I + +++ ++ EE + ++IGKR A G ++ +K
Sbjct: 230 GAETDKDIIESIDDERFFMEIVLNIQEIREEHNINSPEDALEFIGKRVAP-GQAKDYRLK 288
Query: 311 YAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 370
A+ +L +LPH+G KK + G + L G R EDD+DHY KR LAG
Sbjct: 289 RAETVLCNYLLPHLGVTKEDFPKKIRFLGIMARNALELYFGYRGEDDKDHYAYKRAKLAG 348
Query: 371 PLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGN 430
L+ LFR F +L D++ +++ K ++Q A+++ +T +K+++ATG W
Sbjct: 349 DLMEDLFRYAFSQLVKDIKYQLERQTLRNKTPSIQAAVRSDILTERIKHAMATGTW---- 404
Query: 431 AAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNSQWGMMCPAETPE 480
G + GVSQ+L+ +Y +T + ++ P R+LH + WG +CP+ETPE
Sbjct: 405 -VGGKTGVSQLLDRTSYLATNSQL--RRIVSPLSRSQPHFEARELHGTHWGKICPSETPE 461
Query: 481 GQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
G CGLVKN A+M +T ++E L+ +G
Sbjct: 462 GPNCGLVKNFAIMCKVTREEDDSKVIELLKSFG 494
>gi|84490162|ref|YP_448394.1| DNA-directed RNA polymerase subunit beta'' [Methanosphaera
stadtmanae DSM 3091]
gi|84373481|gb|ABC57751.1| RpoB2 [Methanosphaera stadtmanae DSM 3091]
Length = 502
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 165/508 (32%), Positives = 274/508 (53%), Gaps = 53/508 (10%)
Query: 21 AWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS-DFAEI 79
AW+++ ++F+E +V + S+++F N +QEIVD + I + + G+ + ++
Sbjct: 5 AWSLVDSFFDEYDIVDHHIRSYNDFLDNKIQEIVDITEPITL------DHGEYTIKTGDV 58
Query: 80 YLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE---------EV 130
+ KP + E+DG + + ARLRNL YSA +Y+D+ + KG + E+
Sbjct: 59 EIVKPFIKEADGSKSIIEPSEARLRNLNYSAHMYLDMA---LVKGDSDDYEMEKVYIGEL 115
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
P+ML+S C L S + L ++GE P D GGYFI+NGSE+ ++ E+++ N + + + +
Sbjct: 116 PVMLKSKACHLCGLSDEELEKVGEDPQDPGGYFIVNGSERAIVTMEEIAPNKIILEQSEK 175
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILF 250
+ V + +S R T+ K G ++ + PY+ EIP++IL
Sbjct: 176 DKEDRRARAVVTSIKSGFRARITL-------EYRKPHKKGVFLRISFPYVPGEIPLVILL 228
Query: 251 RALGFTADEDILEHICYDFQDTQMM---ELLRPSLEEAFFIQNQQYIGKRGATVGVTREK 307
RA GF D D++ + D +TQ + ++ ++ + +YIG R A G+T E
Sbjct: 229 RAFGFEKDVDLVNSVSDDI-NTQFLLIDDIQTTGVDTKY--DAIKYIGNRVAK-GMTEEY 284
Query: 308 MIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLD 367
IK A++++ + +LPHVG KA Y + LL G R D+DHY NKRL
Sbjct: 285 RIKRAEDVIDRYLLPHVGVDPESRIDKAVYLAEMTDMLLQVINGEREPHDKDHYANKRLR 344
Query: 368 LAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG 427
++G L+ LFR F LT D+ +++ + GK+ +++ A+++ IT +K+++ATGNW
Sbjct: 345 VSGDLMEDLFRVAFTSLTRDMTYQLERSLSRGKEPSVKQAVRSDVITENIKHAIATGNW- 403
Query: 428 QGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNSQWGMMCPAE 477
G RAGVSQ+L+ +Y T ++ ++ P R LH +Q+G +CP E
Sbjct: 404 ----VGGRAGVSQLLDRTSYMGTLSHL--KRVVSPLSRSQPHFEARDLHPTQFGKICPNE 457
Query: 478 TPEGQACGLVKNLALMVYITIGSAAYPI 505
TPEG CGLVKNLA++ I+ G YP+
Sbjct: 458 TPEGPNCGLVKNLAIITKISEG---YPL 482
>gi|296243132|ref|YP_003650619.1| DNA-directed RNA polymerase subunit B' [Thermosphaera aggregans DSM
11486]
gi|296095716|gb|ADG91667.1| DNA-directed RNA polymerase, subunit B' ;DNA-directed RNA
polymerase, subunit B' [Thermosphaera aggregans DSM
11486]
Length = 1163
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 181/541 (33%), Positives = 279/541 (51%), Gaps = 81/541 (14%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
+ T ++ W V+ YFEEKGLVRQ LDS+D F + + E++ E +I I + +
Sbjct: 4 QLTVDDLWLVMKKYFEEKGLVRQHLDSYDRFIRELLPEMLKEFKEIPITEDVKIT----- 58
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE------ 128
+ + +P +G RLRNLTY+AP+ V + K V + G E
Sbjct: 59 -IVDYRIEEPKWITLEGIPERKTPMECRLRNLTYAAPVMVKI-KYVDESGRSKEQELKLM 116
Query: 129 EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKK 188
++P+ML+SS L + + + LT +GE P D GGYFIINGSEKVL+AQE +++N++
Sbjct: 117 DLPVMLKSSIDPLSKMTPEELTSIGEDPKDPGGYFIINGSEKVLVAQEDLASNNIITDVA 176
Query: 189 RQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIII 248
+ + Y ++A++ S+++ + S + + + G +IP+I+
Sbjct: 177 PEGSSYTHLAKIISVSKGKR---SQLVIERRKDGTFYANFQGH-----------KIPVIV 222
Query: 249 LFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ---------------- 292
L +ALG +++IL + + D Q+ + PS++E I ++
Sbjct: 223 LMKALGLVGEDEILYAVSLN-SDIQLH--MFPSIQEVSKIFPREPLPEGLSPEEEERVLR 279
Query: 293 ------------YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET--KKAYYF 338
YIG R A +G RE+ I+ A L + +LPH+GT ET KKA +
Sbjct: 280 ERREKEVEEALDYIGSRIA-IGRPREERIRRALRALDENLLPHIGTDPSPETRIKKAVFI 338
Query: 339 GHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN 398
G +I R++ LG R DD+DHY NKRL LAG LL L RT T D++ +K +
Sbjct: 339 GQMISRIIELHLGFREPDDKDHYRNKRLKLAGDLLSVLLRTALLAFTRDLKESAEKYLAK 398
Query: 399 GKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWK 458
+ ++L+ +K IT + +++ATGNW G + GVSQ+L+ ST ++ +
Sbjct: 399 NRKLDLKMVVKPSVITDRILHAMATGNW-----PGGKTGVSQLLDRTNMLSTLSHL--RR 451
Query: 459 LAKP----------RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIG---SAAYPI 505
+ P R+LH +QWG MCP ETPEG GLVKNLALMV +++G S PI
Sbjct: 452 VVSPLSRGQPHFEARELHGTQWGRMCPFETPEGANIGLVKNLALMVNVSVGVPESEIEPI 511
Query: 506 L 506
L
Sbjct: 512 L 512
>gi|321471157|gb|EFX82130.1| hypothetical protein DAPPUDRAFT_316708 [Daphnia pulex]
Length = 1135
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 177/534 (33%), Positives = 280/534 (52%), Gaps = 47/534 (8%)
Query: 8 LEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQ 67
LE+ E EE W ++ A+ + KGLV+Q +DS++ F +++IV + + S
Sbjct: 12 LEKLLEPIKAVEEKWKLVPAFLKTKGLVKQHIDSYNYFINVEIKKIVKANEKVI----SF 67
Query: 68 HNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIK 122
+P + +I++ KP E + RLR++TYSAP+ VD+ +RV++
Sbjct: 68 ADPTFYLKYLDIHVGKPDSIEDMHHSRLTTPHECRLRDMTYSAPVTVDIEYTRGQQRVVR 127
Query: 123 KGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNH 182
G +PIMLRSS CTL + + ECPYD GGYFI+ G+EKV++ QE+MS N
Sbjct: 128 NGIAIGRMPIMLRSSNCTLAGILPAEMAKKNECPYDCGGYFIVRGNEKVILIQEQMSKNR 187
Query: 183 VYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRT 242
+ V + R+ N C + S + + V M + G+Y + +
Sbjct: 188 MIVEQDRKGNMS------CQVTSSTHGTKTRTNVIM---------NKGKY-YLKQNSFQD 231
Query: 243 EIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEE----AFFIQNQ--QYIGK 296
+IP++I F+A+G +D++I++ I D +M PSLEE + F Q Q ++GK
Sbjct: 232 DIPVVIAFKAMGIVSDQEIVQMIG---TDDHVMTSFAPSLEECVRASIFTQQQALNHLGK 288
Query: 297 R---GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRR 353
+ G ++ + A+E L + +L HV +F KA Y +I R++
Sbjct: 289 KLRQKRFFGGPKKTPLDEAREALAETVLAHVPVLNFNFKAKAMYLALMIRRVIQAERDPT 348
Query: 354 AEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAK 411
+ DDRD+YGNKR +LAG L+ LF LF+++ +++S K + K I+
Sbjct: 349 SVDDRDYYGNKRCELAGSLISLLFEDLFKRMNFELKSIADKNIPKVKAAQFDVIKHIRTD 408
Query: 412 TITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPR 463
T+T GL+ ++ATGNW R GV+Q+L L+Y S + + K++ PR
Sbjct: 409 TLTLGLENAIATGNWTIKRFRMERQGVTQMLCRLSYISGLGMMTRVNSQFEKTRKVSGPR 468
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
L SQWGM+CP++TPEG+ CGLVKNLALM +IT + PI++ + G E+
Sbjct: 469 SLQPSQWGMLCPSDTPEGEGCGLVKNLALMTHITTEAEEEPIIKIAQNMGVEDI 522
>gi|340376544|ref|XP_003386792.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Amphimedon
queenslandica]
Length = 1131
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 175/526 (33%), Positives = 282/526 (53%), Gaps = 56/526 (10%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
E+ W ++ A+ + KGLV+Q LDSF+ F +++IV + D+ I S +P + +
Sbjct: 23 EDKWKLLPAFLKVKGLVKQHLDSFNYFVSTDIKKIV-RANDLVI---SDFDPSFYLKYLD 78
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVPIM 133
IY+ P++ ES + + RLR++TYSAP+ VD+ T+RV +KG ++PIM
Sbjct: 79 IYVGTPLVEESLNVCTQITPQECRLRDMTYSAPVTVDIEYTRGTQRVRRKGFSIGQLPIM 138
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
LRS+ C L +Q+ L +L ECP D GGYF++ G+EKV++ QE++S N + V ++ N
Sbjct: 139 LRSANCVLSNKNQEELAKLKECPIDPGGYFVVRGTEKVILIQEQLSKNRIIVDYDKKGN- 197
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
V S + + IF G + +IP++++F+A+
Sbjct: 198 --IGCSVTSSTHDRKSKTNLIF-------------KGNQFYLKHNSFTDDIPVVLVFKAM 242
Query: 254 GFTADEDILEHI-CYDFQDTQMMELLRPSLEEAFFIQNQQYIGKRGATV--GVTREKM-- 308
+D++I++ I C D ++ + PSLEE + Y K+ V TR++M
Sbjct: 243 NIISDQEIVQMIGCED----SVLSVFAPSLEECAML--NVYTQKKALEVVGAKTRKRMYG 296
Query: 309 -----IKYAKEILQKEMLPH--VGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHY 361
+ A ++L +L H V + DF KA + +I R++L A + DDRD+Y
Sbjct: 297 KPRSKAEEAHDVLSHYVLAHIPVESNDF--KIKASFLSLMIRRVIL-ATAKDEVDDRDYY 353
Query: 362 GNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD--VNLQFAIKAKTITGGLKY 419
GNKRL+LAGPLL LF LF++ +++ + + + + ++ +K IT G++
Sbjct: 354 GNKRLELAGPLLSLLFEDLFKRYNSELKKIIDRTLAKKRTQPFDVVCHMKNSIITQGIET 413
Query: 420 SLATGNWGQGNAAGTRAGVSQVLN------CLTYASTFT--YYLSWKLAKPRQLHNSQWG 471
+L+TGNW R GV+QVL+ CL + + T + + K++ PR L SQWG
Sbjct: 414 ALSTGNWTLRRFKMERGGVTQVLSRMSFIACLGHMTRITSQFEKTRKISGPRSLQPSQWG 473
Query: 472 MMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
M+CP++TPEG+ACGLVKNLAL+ +IT PI G E+
Sbjct: 474 MVCPSDTPEGEACGLVKNLALISHITTDVDEGPIRRLAFNLGVEDI 519
>gi|261350230|ref|ZP_05975647.1| DNA-directed RNA polymerase, beta subunit [Methanobrevibacter
smithii DSM 2374]
gi|288861016|gb|EFC93314.1| DNA-directed RNA polymerase, beta subunit [Methanobrevibacter
smithii DSM 2374]
Length = 514
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 168/533 (31%), Positives = 279/533 (52%), Gaps = 61/533 (11%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
E W ++ A+F++ LV + S+++F + +Q I+D + P + N +
Sbjct: 3 ENNWKLVDAFFDKYDLVDHHIKSYNDFINSGIQNIIDIT-----EPITLENGKYTLKTGK 57
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE-------EVP 131
+++ KP E+DG + ++ ARLRNL YSA +Y+++ + ++G D E+P
Sbjct: 58 LFIEKPFTKEADGSKSMIYPAEARLRNLNYSAHMYLEMA--LNEEGEDNPLEKVYIGELP 115
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
+ML+S C L+ S + L E GE P D GGYFI+NGSE+ ++ E+++ N + + +
Sbjct: 116 VMLKSDICHLHGLSDEELIEQGEDPQDLGGYFIVNGSERAVVTMEEIAPNKIILERIGDV 175
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFR 251
A V S+ F +S K SG ++ + PY+ EIP++IL R
Sbjct: 176 EDRRAKAIVTSIKSG--------FRARISLEYKKPRKSGVFLRISFPYVPGEIPLVILLR 227
Query: 252 ALGFTADEDILEHICYDFQDTQMM--ELLRPSLEEAFFIQNQ------------------ 291
ALG D++I+ I D + QM+ + ++ SL + Q +
Sbjct: 228 ALGLATDQEIITAISND-PNFQMIIADDIQVSLSQLKLDQKEMDGMDKEERRQYLQLAAI 286
Query: 292 QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+YIG R A G+T E IK A++++ + +LPH+G KA Y + LL
Sbjct: 287 KYIGNRVAK-GMTEEYRIKRAEDVINRYLLPHMGIESERREAKATYLAEMTEMLLQVIDE 345
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
+R D+DHY NKRL ++G L+ LFR F LT D+ +++ + GK+++++ A+++
Sbjct: 346 QREPHDKDHYTNKRLRVSGDLMEDLFRVAFTSLTRDMSYQLERSISRGKELSIKQAVRSD 405
Query: 412 TITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP--------- 462
+T +K+++ATGNW G RAGVSQ+L+ +Y T ++ ++ P
Sbjct: 406 VLTENIKHAIATGNW-----VGGRAGVSQLLDRTSYMGTLSHL--RRVVSPLTRSQPHFE 458
Query: 463 -RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
R LH +Q+G +CP ETPEG CGLVKNLALM I+ GS I++ +++
Sbjct: 459 ARDLHPTQFGKICPNETPEGPNCGLVKNLALMCNISEGSDEQEIIDVIKKMNV 511
>gi|260807868|ref|XP_002598730.1| hypothetical protein BRAFLDRAFT_282817 [Branchiostoma floridae]
gi|229284004|gb|EEN54742.1| hypothetical protein BRAFLDRAFT_282817 [Branchiostoma floridae]
Length = 1137
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 179/536 (33%), Positives = 274/536 (51%), Gaps = 51/536 (9%)
Query: 6 ERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPE 65
E+LE T +E W ++ A+ + KGLV+Q +DSF+ F +++I+ + I
Sbjct: 3 EQLESLASPLNTIQEKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKIV---- 58
Query: 66 SQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRV 120
S +P + IY+ P + E T + RLR++TYSAP+ VD+ +RV
Sbjct: 59 SDADPNFYLKYLNIYVGMPDVEEGFNITKPIAPHECRLRDMTYSAPITVDIEYTRGNQRV 118
Query: 121 IKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMST 180
++ +PIMLRSS C L S L +L ECP D GGYF++ G EKV++ QE++S
Sbjct: 119 VRNNLPIGRMPIMLRSSNCVLTGKSPSELAKLKECPLDPGGYFLVKGVEKVILIQEQLSK 178
Query: 181 NHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI--HATLP 238
N + V R+ ++ CS+ S + + +V + +Y H T
Sbjct: 179 NRMIVETDRK----GLIS--CSVTSSTHERKTKTYVVQ---------KNAKYFLKHNTF- 222
Query: 239 YIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--Q 292
+IPI I F+A+G +D++I++ I D + M + PSLEE F Q Q +
Sbjct: 223 --TEDIPIAIAFKAMGVESDQEIVQLIG---TDARTMAAVAPSLEECHKAQVFTQKQALR 277
Query: 293 YIGK--RGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCAL 350
+IG R + G + ++ A+E+L +L HV F K Y ++ R++
Sbjct: 278 FIGVKVRRSRWGGPKRTRVEEAREVLHSTILAHVPVVKFNFRLKCVYLALMVRRVVQAQA 337
Query: 351 GRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--I 408
R DDRD+YGNKRL+LAG LL LF LF+K +++ + + + +
Sbjct: 338 QDRV-DDRDYYGNKRLELAGQLLALLFEDLFKKFNAELKKIADQTIPKPRAAQFDIVKHM 396
Query: 409 KAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLA 460
+ IT GL +++TGNW RAGV+QVL+ L++ S + + K++
Sbjct: 397 RQDQITNGLVNAISTGNWTVKRFKMDRAGVTQVLSRLSFISALGMMTRISSQFEKTRKVS 456
Query: 461 KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT S PI G E+
Sbjct: 457 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDSEEQPIQRLAFNLGVED 512
>gi|289193123|ref|YP_003459064.1| RNA polymerase beta subunit [Methanocaldococcus sp. FS406-22]
gi|288939573|gb|ADC70328.1| RNA polymerase beta subunit [Methanocaldococcus sp. FS406-22]
Length = 495
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 175/519 (33%), Positives = 277/519 (53%), Gaps = 60/519 (11%)
Query: 24 VISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSK 83
++ AYF+E GL+ Q++S+++F +N +Q+I+DE IE ++ G + +I + K
Sbjct: 4 LVDAYFKEHGLIDHQIESYNDFVENRLQKIIDEVGYIE----TEITGGYKVKLGKIKVGK 59
Query: 84 PMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHD---GE-------EVPIM 133
P++ E+DG + AR+R+LTYS PLY+++T +I +G + GE E+P+M
Sbjct: 60 PVIKEADGSIRPITPMEARIRDLTYSVPLYLEMTP-IIGEGENEIVGETVEVYIGELPVM 118
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
L S C LY S++ L ELGE P D GYFIING+EKVLI QE + N + K + K
Sbjct: 119 LGSKICHLYGKSREELIELGEDPEDPFGYFIINGTEKVLITQEDLIPNRILCEKAERSGK 178
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
VA+V S F + + G ++AT P + +IP++IL +AL
Sbjct: 179 LVDVAKVFSTRHG--------FRALCTVERHPDG----LLYATFPGMPGQIPLVILMKAL 226
Query: 254 GFTADEDILE---------HICYDFQDTQMMELLRPSLEEAFFIQNQQYIGKRGATVGVT 304
G D+DI+E I + Q+ + + + EEA ++IGKR A G
Sbjct: 227 GAETDKDIIEAINDERFFMEIVLNIQEIREEHNIN-TPEEAL-----EFIGKRVAP-GQA 279
Query: 305 REKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNK 364
++ +K A+ +L +LPH+G KK + G + L G R EDD+DHY K
Sbjct: 280 KDYRLKRAETVLCNYLLPHLGVTKEDFPKKIRFLGIMTRNALELYFGYRGEDDKDHYAYK 339
Query: 365 RLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATG 424
R LAG L+ LFR F +L D++ +++ K ++Q A+++ +T +K+++ATG
Sbjct: 340 RAKLAGDLMEDLFRYAFSQLVKDIKYQLERQTLRNKTPSIQAAVRSDILTERIKHAMATG 399
Query: 425 NWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNSQWGMMC 474
W G + GVSQ+L+ +Y +T + ++ P R+LH + WG +C
Sbjct: 400 TW-----VGGKTGVSQLLDRTSYLATNSQL--RRIVSPLSRSQPHFEARELHGTHWGKIC 452
Query: 475 PAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
P+ETPEG CGLVKN A+M +T ++E L+ +G
Sbjct: 453 PSETPEGPNCGLVKNFAIMCKVTREEDDSKVIELLKSFG 491
>gi|302657001|ref|XP_003020234.1| hypothetical protein TRV_05698 [Trichophyton verrucosum HKI 0517]
gi|291184045|gb|EFE39616.1| hypothetical protein TRV_05698 [Trichophyton verrucosum HKI 0517]
Length = 1196
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 178/537 (33%), Positives = 271/537 (50%), Gaps = 55/537 (10%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T+ + W ++ A+ + KGLV+Q +DS++ F + +++IV SA+I S +P
Sbjct: 68 NTERDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAEIR----SDIDPKFYIK 123
Query: 76 FAEIYLSKPMMTESDGE----TATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHD 126
F +IYL P T+ + +T+ RLR++TY+AP+ VD +RV + G
Sbjct: 124 FHDIYLGTPRRTDEEQSGIKVDSTITPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTA 183
Query: 127 GEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVF 186
+P+MLRSS C L S + + L ECP D GGYFI+NG+EKV++ QE++S N V V
Sbjct: 184 IGRMPVMLRSSKCVLSNKSAREMYTLHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIV- 242
Query: 187 KKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPI 246
+ P K A V S S R + + R I+ + +IPI
Sbjct: 243 -ETDPKKEIVQASVTS--SSHERKSKSYIIMKKGR-----------IYLRHNVLNDDIPI 288
Query: 247 IILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKR--- 297
+IL +A+G +D+++L + D + E + EEA + Q Q +Y+G R
Sbjct: 289 VILLKAMGIQSDKEML--LLVAGVDMEYQEDFAINFEEAVKLSIYTQQQALEYLGARIKI 346
Query: 298 ---GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
+ G R + A E + ++ HV D KA Y H+ R+L+ L
Sbjct: 347 NRKASGFGPARRNYVAEAIEAISSVIISHVQVQDMNFRPKALYVTHMARRVLMAKLDPSL 406
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN-----GKDVNLQFAIK 409
DDRD+ GNKRL+LAG LL LF LF+K D++ + K + D AI
Sbjct: 407 VDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAYPVVAIH 466
Query: 410 AKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAK 461
IT G+ ++ATGNW RAGV+ VL+ L+Y + + + K++
Sbjct: 467 GNHITQGMNRAIATGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSG 526
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PR L SQ+GM+C ++TPEG+ACGLVKNLALM +IT P+ + + G E+ +
Sbjct: 527 PRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTNDEEEPVQKLVFTLGAEDIQ 583
>gi|302505599|ref|XP_003014506.1| hypothetical protein ARB_07068 [Arthroderma benhamiae CBS 112371]
gi|291178327|gb|EFE34117.1| hypothetical protein ARB_07068 [Arthroderma benhamiae CBS 112371]
Length = 1196
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 178/537 (33%), Positives = 271/537 (50%), Gaps = 55/537 (10%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T+ + W ++ A+ + KGLV+Q +DS++ F + +++IV SA+I S +P
Sbjct: 68 NTERDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAEIR----SDIDPKFYIK 123
Query: 76 FAEIYLSKPMMTESDGE----TATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHD 126
F +IYL P T+ + +T+ RLR++TY+AP+ VD +RV + G
Sbjct: 124 FHDIYLGTPRRTDEEQSGIKVDSTITPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTA 183
Query: 127 GEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVF 186
+P+MLRSS C L S + + L ECP D GGYFI+NG+EKV++ QE++S N V V
Sbjct: 184 IGRMPVMLRSSKCVLSNKSAREMYTLHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIV- 242
Query: 187 KKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPI 246
+ P K A V S S R + + R I+ + +IPI
Sbjct: 243 -ETDPKKEIVQASVTS--SSHERKSKSYIIMKKGR-----------IYLRHNVLNDDIPI 288
Query: 247 IILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKR--- 297
+IL +A+G +D+++L + D + E + EEA + Q Q +Y+G R
Sbjct: 289 VILLKAMGIQSDKEML--LLVAGVDMEYQEDFAINFEEAVKLSIYTQQQALEYLGARIKI 346
Query: 298 ---GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
+ G R + A E + ++ HV D KA Y H+ R+L+ L
Sbjct: 347 NRKASGFGPARRNYVAEAIEAISSVIISHVQVQDMNFRPKALYVTHMARRVLMAKLDPSL 406
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN-----GKDVNLQFAIK 409
DDRD+ GNKRL+LAG LL LF LF+K D++ + K + D AI
Sbjct: 407 VDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAYPVVAIH 466
Query: 410 AKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAK 461
IT G+ ++ATGNW RAGV+ VL+ L+Y + + + K++
Sbjct: 467 GNHITQGMNRAIATGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSG 526
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PR L SQ+GM+C ++TPEG+ACGLVKNLALM +IT P+ + + G E+ +
Sbjct: 527 PRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTNDEEEPVQKLVFTLGAEDIQ 583
>gi|261194511|ref|XP_002623660.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239588198|gb|EEQ70841.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis SLH14081]
Length = 1204
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 177/538 (32%), Positives = 276/538 (51%), Gaps = 56/538 (10%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T E+ W ++ A+ + KGLV+Q +DS++ F + +++IV SA+I S +P
Sbjct: 75 NTAEDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIR----SDVDPNFYIR 130
Query: 76 FAEIYLSKPMMTESDGET-----ATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGH 125
F +IYL P + + ++ +T+ RLR++TY+AP+ VD +RV + G
Sbjct: 131 FHDIYLGNPRRADEEQDSKFDVASTITPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGT 190
Query: 126 DGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYV 185
+P+MLRSS C L S+ + L ECP D GGYFI+NG+EKV++ QE++S N V V
Sbjct: 191 AIGRMPVMLRSSKCVLSNKSEAEMQLLHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIV 250
Query: 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIP 245
+ K A V S S N S ++ M I+ + ++P
Sbjct: 251 --ETDLKKEIVQASVTS---SSNERKSKSYIIM----------KKDRIYMRHNVLNEDVP 295
Query: 246 IIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKR-- 297
I+IL +A+G +D+++L + D+ E + EEA + Q+Q +YIG R
Sbjct: 296 IVILLKAMGIQSDKEML--LLVAGIDSTYQEDFSINFEEAVKLGIYTQHQALEYIGSRIK 353
Query: 298 ----GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRR 353
+ G+TR ++ A E + ++ HV + KA Y H+ R+L+
Sbjct: 354 INRKPNSFGITRRNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPS 413
Query: 354 AEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAI 408
DDRD+ GNKRL+LAG LL LF LF+K D++ + K + D AI
Sbjct: 414 LVDDRDYVGNKRLELAGQLLALLFEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAI 473
Query: 409 KAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLA 460
IT G+ +++TGNW RAGV+ VL+ L+Y + + + K++
Sbjct: 474 HGNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVS 533
Query: 461 KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PR L SQ+GM+CP++TPEG+ACGLVKNLALM +IT P+ + + G E+ +
Sbjct: 534 GPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLIFALGAEDVQ 591
>gi|189230055|ref|NP_001121521.1| polymerase (RNA) III (DNA directed) polypeptide B [Xenopus
(Silurana) tropicalis]
gi|183986364|gb|AAI66377.1| LOC100158643 protein [Xenopus (Silurana) tropicalis]
Length = 1134
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 178/531 (33%), Positives = 275/531 (51%), Gaps = 60/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T +E W ++ A+ + KGLV+Q +DSF+ F + +++I+ + + S +P +
Sbjct: 22 TVQEKWKLLPAFLKVKGLVKQHIDSFNYFINDEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R+
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKG 197
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFR 251
A V S E ++R T V R K H TL +IPI I+F+
Sbjct: 198 TVGASVTS--STHEKKSR---TNLVVKQGRFYLK--------HNTL---TEDIPIAIIFK 241
Query: 252 ALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVTR 305
A+G +D++I++ I + ++ PSLEE F Q Q ++IG + V R
Sbjct: 242 AMGVESDQEIVQMIG---TEEHVIAAFAPSLEECQKAQIFTQMQALKFIGNK-----VRR 293
Query: 306 EKM----------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
++M I A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 294 QRMWGSSGPKKSKIDEARELLASTILTHVPVKEFHFRTKCIYIAVMVRRVIL-AQGANKV 352
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 353 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 412
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ ++++GNW R GV+QVL+ L+Y + + + K++ PR L
Sbjct: 413 TNGMVNAISSGNWSLKRFKMDRQGVTQVLSRLSYIAALGMMTRISSQFEKTRKVSGPRSL 472
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 473 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAANLGVED 523
>gi|239613518|gb|EEQ90505.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327357033|gb|EGE85890.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1228
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 177/538 (32%), Positives = 276/538 (51%), Gaps = 56/538 (10%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T E+ W ++ A+ + KGLV+Q +DS++ F + +++IV SA+I S +P
Sbjct: 99 NTAEDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIR----SDVDPNFYIR 154
Query: 76 FAEIYLSKPMMTESDGET-----ATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGH 125
F +IYL P + + ++ +T+ RLR++TY+AP+ VD +RV + G
Sbjct: 155 FHDIYLGNPRRADEEQDSKFDVASTITPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGT 214
Query: 126 DGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYV 185
+P+MLRSS C L S+ + L ECP D GGYFI+NG+EKV++ QE++S N V V
Sbjct: 215 AIGRMPVMLRSSKCVLSNKSEAEMQLLHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIV 274
Query: 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIP 245
+ K A V S S N S ++ M I+ + ++P
Sbjct: 275 --ETDLKKEIVQASVTS---SSNERKSKSYIIM----------KKDRIYMRHNVLNEDVP 319
Query: 246 IIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKR-- 297
I+IL +A+G +D+++L + D+ E + EEA + Q+Q +YIG R
Sbjct: 320 IVILLKAMGIQSDKEML--LLVAGIDSTYQEDFSINFEEAVKLGIYTQHQALEYIGSRIK 377
Query: 298 ----GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRR 353
+ G+TR ++ A E + ++ HV + KA Y H+ R+L+
Sbjct: 378 INRKPNSFGITRRNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPS 437
Query: 354 AEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAI 408
DDRD+ GNKRL+LAG LL LF LF+K D++ + K + D AI
Sbjct: 438 LVDDRDYVGNKRLELAGQLLALLFEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAI 497
Query: 409 KAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLA 460
IT G+ +++TGNW RAGV+ VL+ L+Y + + + K++
Sbjct: 498 HGNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVS 557
Query: 461 KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PR L SQ+GM+CP++TPEG+ACGLVKNLALM +IT P+ + + G E+ +
Sbjct: 558 GPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLIFALGAEDVQ 615
>gi|425771289|gb|EKV09736.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425776820|gb|EKV15021.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1208
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 173/535 (32%), Positives = 278/535 (51%), Gaps = 55/535 (10%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T + W ++ A+ + KGLV+Q LDS++ F + M++IV+ S+ IR + HN
Sbjct: 83 NTARDKWNLLPAFLKVKGLVKQHLDSYNYFVEVQMKKIVESSS--TIRSDVDHN--FYIK 138
Query: 76 FAEIYLSKPMMTESDGE-----TATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGH 125
F +IY++ P + G+ +T+ + RLR+ TY+AP+ VD +RVI++
Sbjct: 139 FTDIYVASPRRADEQGDGGIDFESTITPQECRLRDTTYAAPILVDFEYVRGRQRVIRRAV 198
Query: 126 DGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYV 185
+PIMLRSS C L + ++ L ECP D GGYF++NG+EKV++ QE++S N + V
Sbjct: 199 PIGRIPIMLRSSKCVLSNKTPAQMSVLNECPLDPGGYFVVNGTEKVILVQEQLSKNRIIV 258
Query: 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIP 245
+ P K A V S S N S ++ S KG ++ + +IP
Sbjct: 259 --ETDPKKEIVQASVTS---SSNERKSKSYI-----VSKKG-----RLYVKHNVLNEDIP 303
Query: 246 IIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ---NQQYIGKRGATVG 302
I+IL +A+G D+++++ + D D+ + + EEA + QQ + G +
Sbjct: 304 IVILLKAMGIHTDKEMMQMVTGD--DSLYQDDFAINFEEAINVDVYTQQQALEWIGCRIK 361
Query: 303 VTREKM------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAED 356
+ R++ ++ A E + ++ H+ D KA Y H+ R+L+ D
Sbjct: 362 INRKQAAYRKTHVQEAVEAIASVIISHIEVKDMNFRPKAIYVAHMARRVLMAKSDPALVD 421
Query: 357 DRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQF------AIKA 410
DRD+ GNKRL+LAG +L LF LF+K D++ + K + N ++ QF +
Sbjct: 422 DRDYLGNKRLELAGQMLALLFEDLFKKFCFDIKMNIDKVL-NKRNRAEQFDAWTIVTMHG 480
Query: 411 KTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKP 462
IT G+ +++TGNW RAGV+ VL+ L+Y + + + K++ P
Sbjct: 481 NHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGP 540
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
R L SQ+GM+CPA+TPEG+ACGLVKNLALM +IT P+ + G E+
Sbjct: 541 RALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTNDEEGPVRNLIFMLGVEDI 595
>gi|408402778|ref|YP_006860761.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|300521500|gb|ADK25961.1| RNA polymerase B [Candidatus Nitrososphaera gargensis]
gi|408363374|gb|AFU57104.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 1116
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 175/519 (33%), Positives = 270/519 (52%), Gaps = 47/519 (9%)
Query: 20 EAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEI 79
E W +I+ +G+ RQ L+S++EF + +Q I+DE +IEI E+ P + +I
Sbjct: 7 EMWPIINDILRREGVARQHLNSYNEFMERGLQSIIDEVGEIEI--ETAEYP-YKIKLGKI 63
Query: 80 YLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKG--------HDGEEVP 131
L +P + E DG + ARLRNLTY++P+ ++ + V++ G H G+ +P
Sbjct: 64 KLQQPRIMELDGSITHVAPMEARLRNLTYASPVMLECS--VVEDGKILESRFIHIGD-MP 120
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
+M++S+ C L+ + L E GE P D GGYFIINGSE+V++ E +S N + V +
Sbjct: 121 VMVKSNTCILHNLPESKLIEFGEDPRDPGGYFIINGSERVIVGLEDLSYNKIIVDAEEAT 180
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFR 251
Y A+V S + P GS I +P +IP+I L R
Sbjct: 181 GTLLYKAKVYSSIVGYRAKLELVMRP--------DGS----IVTKIPGSPVDIPLITLIR 228
Query: 252 ALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREK 307
ALG +D+DI + + + + + L PS E+A + + YI KR A G+ E
Sbjct: 229 ALGLESDKDIADSVSLN---ETIQDELEPSFEKAGDVNTSRDAIVYISKRIAP-GMLEEF 284
Query: 308 MIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLD 367
IK A+ +L +LPH+G +KA + G +L+ LG DD+DHYGNK +
Sbjct: 285 QIKRAETLLDWGLLPHIGKNPDNRHEKALFLGEAASKLIELKLGWIDADDKDHYGNKVIK 344
Query: 368 LAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG 427
AG +L LFRT FR L D++ +++ + A++ ++ L ++ATGNWG
Sbjct: 345 FAGQMLADLFRTAFRNLIRDMKYQLERSGQKRGINAVAAAVRPGIVSDKLNNAIATGNWG 404
Query: 428 QGNAAGTRAGVSQVLNCLTYASTFTYY--LSWKLAK------PRQLHNSQWGMMCPAETP 479
+G R GV+Q+L+ Y ST ++ + L++ R LH + +G +CPAETP
Sbjct: 405 RG-----RVGVTQLLDRTNYMSTISHLRRIQSPLSRSQPNFEARDLHATHFGRICPAETP 459
Query: 480 EGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
EG CGLVKNLAL I++ + + E L E G +N E
Sbjct: 460 EGSNCGLVKNLALSAIISVNVQSAEVTEKLYELGVQNVE 498
>gi|327300783|ref|XP_003235084.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
gi|326462436|gb|EGD87889.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
Length = 1210
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 178/537 (33%), Positives = 271/537 (50%), Gaps = 55/537 (10%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T+ + W ++ A+ + KGLV+Q +DS++ F + +++IV SA+I S +P
Sbjct: 82 NTERDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLRKIVQSSAEIR----SDIDPKFYIK 137
Query: 76 FAEIYLSKPMMTESDGE----TATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHD 126
F +IYL P T+ + +T+ RLR++TY+AP+ VD +RV + G
Sbjct: 138 FHDIYLGTPRRTDEEQSGIKADSTITPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTA 197
Query: 127 GEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVF 186
+P+MLRSS C L S + + L ECP D GGYFI+NG+EKV++ QE++S N V V
Sbjct: 198 IGRMPVMLRSSKCVLSNKSAREMYTLHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIV- 256
Query: 187 KKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPI 246
+ P K A V S S R + + R I+ + +IPI
Sbjct: 257 -ETDPKKEIVQASVTS--SSHERKSKSYIIMKKGR-----------IYLRHNVLNDDIPI 302
Query: 247 IILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKR--- 297
+IL +A+G +D+++L + D + E + EEA + Q Q +Y+G R
Sbjct: 303 VILLKAMGIQSDKEML--LLVAGVDMEYQEDFAINFEEAVKLSIYTQQQALEYLGARIKI 360
Query: 298 ---GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
+ G R + A E + ++ HV D KA Y H+ R+L+ L
Sbjct: 361 NRKASGFGPARRNYVAEAIEAISSVIISHVQVQDMNFRPKALYVTHMARRVLMAKLDPSL 420
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN-----GKDVNLQFAIK 409
DDRD+ GNKRL+LAG LL LF LF+K D++ + K + D AI
Sbjct: 421 VDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAYPVVAIH 480
Query: 410 AKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAK 461
IT G+ ++ATGNW RAGV+ VL+ L+Y + + + K++
Sbjct: 481 GNHITQGMNRAIATGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSG 540
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PR L SQ+GM+C ++TPEG+ACGLVKNLALM +IT P+ + + G E+ +
Sbjct: 541 PRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTNDEEEPVQKLVFTLGAEDIQ 597
>gi|126132998|ref|XP_001383024.1| DNA-directed RNA polymerase III [Scheffersomyces stipitis CBS 6054]
gi|126094849|gb|ABN64995.1| DNA-directed RNA polymerase III [Scheffersomyces stipitis CBS 6054]
Length = 1155
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 173/540 (32%), Positives = 274/540 (50%), Gaps = 48/540 (8%)
Query: 5 EERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRP 64
E R ++ +E T E+ W ++ A+ + KGLV+Q LDSF+ F +++I+ + +
Sbjct: 25 EYRGKKLTDEINTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIRANELVL--- 81
Query: 65 ESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKR 119
S +P + +I + + + L RLR+LTYSAP+YVDV K
Sbjct: 82 -SDVDPEFYLKYLDIRVGHKSSSAPGTKEVILPPHECRLRDLTYSAPIYVDVEYTRGRKI 140
Query: 120 VIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMS 179
++ K + +P+MLRS+ C L + K + + ECP D GGYF++NG+EKV++ QE++S
Sbjct: 141 IMHKDLEIGRMPVMLRSNKCILDGINDKQMAKFDECPLDPGGYFVVNGTEKVILVQEQLS 200
Query: 180 TNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPY 239
N + V + ++ + + + + R T + + K S
Sbjct: 201 KNRIIV----EADEKKGIVQASVTSSTHERKSKTYVITKNDKIYLKHNS----------- 245
Query: 240 IRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QY 293
I +IPI+I+ +A G T+D +IL+ +C D Q +L + EEA F Q Q Y
Sbjct: 246 ISEDIPIVIVLKAAGITSDLEILQLVC--GSDPQYQDLFVVNFEEAAKLEVFTQQQALNY 303
Query: 294 IGKRGATV---GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCAL 350
+GKR T+ G + +++ E + ++ H+ D +KA Y + R+++
Sbjct: 304 VGKRVKTIRRAGAAKLSVLQEGIEAIATTVIAHITVADLQFREKALYIATMARRVVMTMH 363
Query: 351 GRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQ 405
+ DDRD+ GNKRL+LAG L+ LF LF+K D ++ + K + D L
Sbjct: 364 NPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRTSEFDALLS 423
Query: 406 FAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSW 457
I + IT GL +++TGNW RAGV+ VL+ L+Y S + S
Sbjct: 424 INIHSNNITMGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 483
Query: 458 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
K++ PR L SQ+GM+C ++TPEG+ACGLVKNLALM +IT PI + G EN
Sbjct: 484 KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEAPIRKLCYVLGCENI 543
>gi|321468089|gb|EFX79076.1| hypothetical protein DAPPUDRAFT_305037 [Daphnia pulex]
Length = 1134
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 175/534 (32%), Positives = 273/534 (51%), Gaps = 47/534 (8%)
Query: 8 LEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQ 67
LE+ E EE W ++ A+ + KGLV+Q +DS++ F +++IV + + S
Sbjct: 12 LEKLLEPIKAVEEKWKLVPAFLKTKGLVKQHIDSYNYFINVDIKKIVKANEKVV----SH 67
Query: 68 HNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIK 122
+ + +I++ KP E + RLR++TYSAP+ VD+ +R+++
Sbjct: 68 SDQTFYIKYLDIHVGKPDSIEDMNHSRLTTPHECRLRDMTYSAPVTVDIEYTRGQQRIVR 127
Query: 123 KGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNH 182
G +PIMLRSS CTL S + + ECPYD GGYFI+ G+EKV++ QE+MS N
Sbjct: 128 NGIPIGRMPIMLRSSNCTLAGISPAEMAKKNECPYDCGGYFIVRGNEKVILIQEQMSKNR 187
Query: 183 VYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRT 242
+ V + R+ N C + S + +RT+ Y+ +
Sbjct: 188 MIVEQDRKGNMS------CQVTSSTHGTK--------TRTNVVVNKGKYYLKQN--SFQD 231
Query: 243 EIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEE---AFFIQNQQYIGKRGA 299
+IP+ I+F+A+G +D++I++ I D ++M PSLEE A QQ +G G
Sbjct: 232 DIPVAIVFKAMGIVSDQEIVQMIG---TDDRVMTSFAPSLEECVRASIFTQQQALGHLGN 288
Query: 300 TV------GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRR 353
+ G ++ + A+E L +L HV +F KA Y +I R++
Sbjct: 289 KLRQKRFFGGPKKTATEEARETLATTILAHVPVENFNFKAKAMYLALMIRRVIQAENDPT 348
Query: 354 AEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAK 411
+ DDRD+YGNKRL+LAG LL LF LF+++ +++ K + K I+
Sbjct: 349 SVDDRDYYGNKRLELAGSLLSLLFEDLFKRMNFELKQIADKNIPKIKAAQFDVIKHIRTD 408
Query: 412 TITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPR 463
IT GL+ +++TGNW R GV+Q+L L+Y S + + K++ PR
Sbjct: 409 HITNGLENAISTGNWTIKRFRMDRQGVTQMLCRLSYISGLGMMTRVNSQFEKTRKVSGPR 468
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
L SQWGM+CP++TPEG+ CGLVKNLALM +IT + PI + G E+
Sbjct: 469 SLQPSQWGMLCPSDTPEGEGCGLVKNLALMTHITTEAEEEPISRIAQNMGVEDI 522
>gi|315048479|ref|XP_003173614.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma gypseum
CBS 118893]
gi|311341581|gb|EFR00784.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma gypseum
CBS 118893]
Length = 1210
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 178/537 (33%), Positives = 271/537 (50%), Gaps = 55/537 (10%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T+ + W ++ A+ + KGLV+Q +DS++ F + +++IV SA+I S +P
Sbjct: 82 NTERDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAEIR----SDIDPKFYIK 137
Query: 76 FAEIYLSKPMMTESDGE----TATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHD 126
F +IYL P T+ + +T+ RLR++TY+AP+ VD +RV + G
Sbjct: 138 FHDIYLGAPRRTDEEQSGIKIDSTITPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTA 197
Query: 127 GEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVF 186
+P+MLRSS C L S + + L ECP D GGYFI+NG+EKV++ QE++S N V V
Sbjct: 198 IGRMPVMLRSSKCVLSNKSAREMYTLHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIV- 256
Query: 187 KKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPI 246
+ P K A V S S R + + R I+ + +IPI
Sbjct: 257 -ETDPKKEIVQASVTS--SSHERKSKSYIIMKKGR-----------IYLRHNVLNDDIPI 302
Query: 247 IILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKR--- 297
+IL +A+G +D+++L + D + E + EEA + Q Q +Y+G R
Sbjct: 303 VILLKAMGIQSDKEML--LLVAGVDMEYQEDFAINFEEAVKLNIYTQQQALEYLGARIKI 360
Query: 298 ---GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
+ G R + A E + ++ HV D KA Y H+ R+L+ L
Sbjct: 361 NRKASGFGPARRNYVAEAIEAISSVIISHVQVQDMNFRPKALYVTHMARRVLMAKLDPSL 420
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN-----GKDVNLQFAIK 409
DDRD+ GNKRL+LAG LL LF LF+K D++ + K + D AI
Sbjct: 421 VDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAYPVVAIH 480
Query: 410 AKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAK 461
IT G+ ++ATGNW RAGV+ VL+ L+Y + + + K++
Sbjct: 481 GNHITQGMNRAIATGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSG 540
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PR L SQ+GM+C ++TPEG+ACGLVKNLALM +IT P+ + + G E+ +
Sbjct: 541 PRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTNDEEEPVQKLVFTLGAEDIQ 597
>gi|222445208|ref|ZP_03607723.1| hypothetical protein METSMIALI_00831 [Methanobrevibacter smithii
DSM 2375]
gi|222434773|gb|EEE41938.1| DNA-directed RNA polymerase, beta subunit [Methanobrevibacter
smithii DSM 2375]
Length = 514
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 167/533 (31%), Positives = 279/533 (52%), Gaps = 61/533 (11%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
E W ++ A+F++ LV + S+++F + +Q I+D + P + N +
Sbjct: 3 ENNWKLVDAFFDKYDLVDHHIKSYNDFINSGIQNIIDIT-----EPITLENGKYTLKTGK 57
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE-------EVP 131
+++ KP E+DG + ++ ARLRNL YSA +Y+++ + ++G D E+P
Sbjct: 58 LFIEKPFTKEADGSKSMIYPAEARLRNLNYSAHMYLEMA--LNEEGEDNPLEKVYIGELP 115
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
+ML+S C L+ S + L E GE P D GGYFI+NGSE+ ++ E+++ N + + +
Sbjct: 116 VMLKSDICHLHGLSDEELIEQGEDPQDLGGYFIVNGSERAVVTMEEIAPNKIILERIGDV 175
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFR 251
A V S+ F +S K SG ++ + PY+ EIP++IL R
Sbjct: 176 EDRRAKAIVTSIKSG--------FRARISLEYKKPRKSGVFLRISFPYVPGEIPLVILLR 227
Query: 252 ALGFTADEDILEHICYDFQDTQMM--ELLRPSLEEAFFIQNQ------------------ 291
ALG D++I+ I D + QM+ + ++ SL + Q +
Sbjct: 228 ALGLATDQEIITAISND-PNFQMIIADDIQVSLSQLKLDQKEMDGMDKEERRQYLQLAAI 286
Query: 292 QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+YIG R A G+T E IK A++++ + +LPH+G KA Y + LL
Sbjct: 287 KYIGNRVAK-GMTEEYRIKRAEDVINRYLLPHMGIESERREAKATYLAEMTEMLLQVIDE 345
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
+R D+DHY NKRL ++G L+ LFR F LT D+ +++ + GK+++++ A+++
Sbjct: 346 QREPHDKDHYTNKRLRVSGDLMEDLFRVAFTSLTRDMSYQLERSISRGKELSIKQAVRSD 405
Query: 412 TITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP--------- 462
+T +K+++ATGNW G RAGVSQ+L+ +Y T ++ ++ P
Sbjct: 406 VLTENIKHAIATGNW-----VGGRAGVSQLLDRTSYMGTLSHL--RRVVSPLTRSQPHFE 458
Query: 463 -RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
R LH +Q+G +CP ETPEG CGLVKNLAL+ I+ GS I++ +++
Sbjct: 459 ARDLHPTQFGKICPNETPEGPNCGLVKNLALLCNISEGSDEQEIIDVIKKMNV 511
>gi|326479873|gb|EGE03883.1| DNA-directed RNA polymerase III subunit RPC2 [Trichophyton equinum
CBS 127.97]
Length = 1210
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 178/537 (33%), Positives = 271/537 (50%), Gaps = 55/537 (10%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T+ + W ++ A+ + KGLV+Q +DS++ F + +++IV SA+I S +P
Sbjct: 82 NTERDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAEIR----SDIDPKFYIK 137
Query: 76 FAEIYLSKPMMTESDGE----TATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHD 126
F +IYL P T+ + +T+ RLR++TY+AP+ VD +RV + G
Sbjct: 138 FHDIYLGTPRRTDEEQSGIKIDSTITPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTA 197
Query: 127 GEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVF 186
+P+MLRSS C L S + + L ECP D GGYFI+NG+EKV++ QE++S N V V
Sbjct: 198 IGRMPVMLRSSKCVLSNKSAREMYTLHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIV- 256
Query: 187 KKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPI 246
+ P K A V S S R + + R I+ + +IPI
Sbjct: 257 -ETDPKKEIVQASVTS--SSHERKSKSYIIMKKGR-----------IYLRHNVLNDDIPI 302
Query: 247 IILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKR--- 297
+IL +A+G +D+++L + D + E + EEA + Q Q +Y+G R
Sbjct: 303 VILLKAMGIQSDKEML--LLVAGVDMEYQEDFAINFEEAVKLSIYTQQQALEYLGARIKI 360
Query: 298 ---GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
+ G R + A E + ++ HV D KA Y H+ R+L+ L
Sbjct: 361 NRKASGFGPARRNYVAEAIEAISSVIISHVQVQDMNFRPKALYVTHMARRVLMAKLDPSL 420
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN-----GKDVNLQFAIK 409
DDRD+ GNKRL+LAG LL LF LF+K D++ + K + D AI
Sbjct: 421 VDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAYPVVAIH 480
Query: 410 AKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAK 461
IT G+ ++ATGNW RAGV+ VL+ L+Y + + + K++
Sbjct: 481 GNHITQGMNRAIATGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSG 540
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PR L SQ+GM+C ++TPEG+ACGLVKNLALM +IT P+ + + G E+ +
Sbjct: 541 PRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTNDEEEPVQKLVFILGAEDIQ 597
>gi|159041032|ref|YP_001540284.1| DNA-directed RNA polymerase subunit B [Caldivirga maquilingensis
IC-167]
gi|157919867|gb|ABW01294.1| RNA polymerase Rpb2 domain 6 [Caldivirga maquilingensis IC-167]
Length = 1131
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 183/537 (34%), Positives = 272/537 (50%), Gaps = 68/537 (12%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDE----SADIEIRPE 65
ED E+ W ++ +Y GLVR Q+DSF++F ++EIV E D++++
Sbjct: 21 EDSGGYIASEDRWTLVESYVRSYGLVRHQIDSFNDFVDRKLKEIVQEFNIDLGDVKVK-- 78
Query: 66 SQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGH 125
F ++ + KP E G ++ ARLRN+TY+AP+ + V +
Sbjct: 79 ----------FIDVEVGKPRFKEPTGVENVIYPMEARLRNITYAAPMRLKVMLYI----- 123
Query: 126 DGEE---------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQE 176
+GEE +PIM++S YC LY +A+ + E P D GGYFIINGSE+V+++QE
Sbjct: 124 NGEEYTETVPLGDLPIMVKSKYCNLYGLKPQAIVKKLEDPNDPGGYFIINGSERVVVSQE 183
Query: 177 KMSTNH-VYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHA 235
++ N +Y + +R + A++ SM +T+ V K G I+
Sbjct: 184 DLALNKPIYDYDERGATRIPR-AKIISMGPGYR---TTVVV-----EYHKDG----VIYV 230
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI-----QN 290
+P I T +P ++ RALG D+DI + D ELL S E A I +
Sbjct: 231 QIPKIPTRMPFPVVMRALGLEKDQDI--ALAVSDNDEIQRELL-ASFEMAIQIAPTVDEA 287
Query: 291 QQYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGT--GDFCETKKAYYFGHIIHRLLLC 348
+ YIG+R +G RE I+ A E L K LPH+GT D KA G + ++
Sbjct: 288 RDYIGRR-IVLGHPREIRIQRALEYLDKYFLPHLGTTPDDKVRLSKAIELGQAVAGVIEL 346
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAI 408
G R DD+DH NKR+ L G LL LFR++F + D+R+ ++K GK L+ +
Sbjct: 347 YKGWRQPDDKDHMSNKRVRLVGDLLAQLFRSIFAQFVQDLRNQLEKQYSRGKIPELRTIV 406
Query: 409 KAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYL----SWKLAKP-- 462
+A I+ LK++L+TGNW G + GV+Q+L+ Y ST ++ S +P
Sbjct: 407 RADIISDRLKHALSTGNW-----VGGKTGVTQMLDRTNYVSTISHLRRVVSSLSRTQPHF 461
Query: 463 --RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
R LH +QWG +C ETPEGQ CGLVKN+ALM +T+G + L E G N
Sbjct: 462 EARDLHPTQWGRLCAIETPEGQNCGLVKNMALMATVTVGVDEASVEAMLREMGVINV 518
>gi|326468641|gb|EGD92650.1| DNA-directed RNA polymerase III [Trichophyton tonsurans CBS 112818]
Length = 1210
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 178/537 (33%), Positives = 271/537 (50%), Gaps = 55/537 (10%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T+ + W ++ A+ + KGLV+Q +DS++ F + +++IV SA+I S +P
Sbjct: 82 NTERDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAEIR----SDIDPKFYIK 137
Query: 76 FAEIYLSKPMMTESDGE----TATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHD 126
F +IYL P T+ + +T+ RLR++TY+AP+ VD +RV + G
Sbjct: 138 FHDIYLGTPRRTDEEQSGIKIDSTITPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTA 197
Query: 127 GEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVF 186
+P+MLRSS C L S + + L ECP D GGYFI+NG+EKV++ QE++S N V V
Sbjct: 198 IGRMPVMLRSSKCVLSNKSAREMYTLHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIV- 256
Query: 187 KKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPI 246
+ P K A V S S R + + R I+ + +IPI
Sbjct: 257 -ETDPKKEIVQASVTS--SSHERKSKSYIIMKKGR-----------IYLRHNVLNDDIPI 302
Query: 247 IILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKR--- 297
+IL +A+G +D+++L + D + E + EEA + Q Q +Y+G R
Sbjct: 303 VILLKAMGIQSDKEML--LLVAGVDMEYQEDFAINFEEAVKLSIYTQQQALEYLGARIKI 360
Query: 298 ---GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
+ G R + A E + ++ HV D KA Y H+ R+L+ L
Sbjct: 361 NRKASGFGPARRNYVAEAIEAISSVIISHVQVQDMNFRPKALYVTHMARRVLMAKLDPSL 420
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN-----GKDVNLQFAIK 409
DDRD+ GNKRL+LAG LL LF LF+K D++ + K + D AI
Sbjct: 421 VDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAYPVVAIH 480
Query: 410 AKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAK 461
IT G+ ++ATGNW RAGV+ VL+ L+Y + + + K++
Sbjct: 481 GNHITQGMNRAIATGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSG 540
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PR L SQ+GM+C ++TPEG+ACGLVKNLALM +IT P+ + + G E+ +
Sbjct: 541 PRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTNDEEEPVQKLVFILGAEDIQ 597
>gi|345498326|ref|XP_001607116.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
[Nasonia vitripennis]
Length = 1135
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 167/521 (32%), Positives = 271/521 (52%), Gaps = 46/521 (8%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
E W ++ A+ + KGLV+Q +DSF+ F +++IV + + S +P +
Sbjct: 28 ENKWKLVPAFLQGKGLVKQHIDSFNYFINVEIKKIVKANEKVL----SDADPLFYVKYLN 83
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT-----KRVIKKGHDGEEVPIM 133
+ + P + E + RLR+L YSAP+ VD+ + +I+ +PIM
Sbjct: 84 VSIGTPDIEEGFSVSRPTTPHECRLRDLNYSAPITVDIEYMRGHQPIIRNNLLIGRMPIM 143
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
LRSS C L + S L ++ ECP+D GGYFIING EKV++ QE+M N + + + NK
Sbjct: 144 LRSSNCVLSEKSNFELAKMNECPHDPGGYFIINGQEKVILIQEQMLRNRIIL---EEDNK 200
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
VA C+ A + + ++T+ G + Y+ + + +IP++I+F+A+
Sbjct: 201 NCIVAS-CNSATQERK----------TKTNVIGRAGKYYLRHNI--FQDDIPVVIIFKAM 247
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI----QNQ--QYIG--KRGATVGVTR 305
G D++I++ I + M+ + SLEE + QNQ +Y+G ++ V +
Sbjct: 248 GIVCDQEIVQLIG---TEENFMKKIGASLEECHALNIVAQNQALKYLGNKRKQKRFTVVK 304
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
+ K++L +L HV DF KA Y ++ ++++ + DDRD+YGNKR
Sbjct: 305 SSITDEMKDVLASNILSHVPVIDFNFKLKATYLALMVRKVMIAQTDGKLVDDRDYYGNKR 364
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGLKYSLAT 423
L+LAG LL +F LF++ D+++ K + K ++ +IT GL ++++
Sbjct: 365 LELAGSLLALMFEDLFKRFNWDLKTIADKNIPKIKAAQFDIVKHMRHDSITNGLAVAISS 424
Query: 424 GNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQWGMMCP 475
GNW R GV+QVL+ L+Y S + + K++ PR L SQWGM+CP
Sbjct: 425 GNWTIKRFKMERHGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCP 484
Query: 476 AETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
++TPEG+ CGLVKNLALM +IT PI+ G EN
Sbjct: 485 SDTPEGEGCGLVKNLALMTHITTEIEEEPIMRLAFNLGVEN 525
>gi|294660111|ref|XP_002777730.1| DEHA2G23232p [Debaryomyces hansenii CBS767]
gi|199434470|emb|CAR66041.1| DEHA2G23232p [Debaryomyces hansenii CBS767]
Length = 1165
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 172/532 (32%), Positives = 268/532 (50%), Gaps = 48/532 (9%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ 72
++ T ++ W ++ A+ + KGLV+Q LDSF+ F +++I+ + + S +P
Sbjct: 36 DQINTADDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANELVL----SDVDPEF 91
Query: 73 QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDG 127
+ +I + + + L RLR+LTYSAP+YVDV K ++ K +
Sbjct: 92 YLKYLDIRIGHKSTSPPGTKEVILPPHECRLRDLTYSAPIYVDVEYTRGRKIIMHKDLEI 151
Query: 128 EEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
+PIMLRS+ C L ++ + ECP D GGYFI+NG+EKV++ QE++S N + V
Sbjct: 152 GRMPIMLRSNKCILDGIDEQQMARFDECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEA 211
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+ N + + + + R T + + I+ I +IPI+
Sbjct: 212 DEKKN----IVQASVTSSTHERKSKTYVI-----------TKNDNIYLKHNSISEDIPIV 256
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATV 301
I+ +A G T+D +IL+ +C QD Q +L + EEA F Q Q Y+GKR T+
Sbjct: 257 IILKAAGITSDLEILQLVC--GQDPQYQDLFVVNFEEAAKLEIFTQQQALNYVGKRVKTI 314
Query: 302 ---GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDR 358
G + ++ E + ++ H+ D +KA Y + R+L+ + DDR
Sbjct: 315 RRAGAPKLSQMQEGIEAIATTIIAHLTVSDLQFREKALYIAAMARRVLMTMHNPKMVDDR 374
Query: 359 DHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIKAKTI 413
D+ GNKRL+LAG L+ LF LF+K D ++ + K + D L I + I
Sbjct: 375 DYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRASEFDALLSINIHSNNI 434
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T GL +++TGNW RAGV+ VL+ L+Y S + S K++ PR L
Sbjct: 435 TMGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRAL 494
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
SQ+GM+C A+TPEG+ACGLVKNLALM +IT PI + G E+
Sbjct: 495 QPSQFGMLCTADTPEGEACGLVKNLALMTHITSDDEELPIKKLCYVLGCEDI 546
>gi|396941813|gb|AFN89624.1| RNA polymerase II, partial [Cyniclomyces guttulatus]
Length = 753
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 129/235 (54%), Positives = 166/235 (70%), Gaps = 9/235 (3%)
Query: 293 YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGR 352
+IG+ G +G+ +EK I+ AK+I KE PH + E++KA+ G++I+RLLLCAL R
Sbjct: 11 FIGRXGTALGIKKEKRIQXAKDIXXKEFXPHXXQLEXFESRKAFXLGYMINRLLLCALDR 70
Query: 353 RAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKT 412
+ +DDRDH+G K LAGPLLG LF+TLFRKLT D+ Y+Q+ V+ D N++ AI AKT
Sbjct: 71 KDQDDRDHFGXKXXXLAGPLLGQLFKTLFRKLTRDIFRYMQRTVEEANDFNMKLAIXAKT 130
Query: 413 ITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKPR 463
IT LKY+LATGNWG Q A +RAGVSQVLN TY+ST ++ KLAKPR
Sbjct: 131 ITSXLKYALATGNWGXQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPR 190
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
QLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ PI+ F EWG E E
Sbjct: 191 QLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFXSEWGMEPLE 245
>gi|410907712|ref|XP_003967335.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
[Takifugu rubripes]
Length = 1132
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 176/526 (33%), Positives = 272/526 (51%), Gaps = 50/526 (9%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T E W ++ A+ + KGLV+Q +DSF+ F +++I+ + I S +P
Sbjct: 21 NTVAEKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKIT----SDADPMWYLK 76
Query: 76 FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEV 130
+ IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +
Sbjct: 77 YLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRM 136
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
PIMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V + R
Sbjct: 137 PIMLRSSNCVLTGKTPMEFAKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVDQDR- 195
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIIL 249
K A A V S + SRT+ Y+ H TL + PI I+
Sbjct: 196 --KGAVGASVTSSTHEKK-----------SRTNMIVKQGRFYLRHNTL---SEDAPIAII 239
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIG---KRGAT 300
F+ +G +D++I++ I + +M PSLEE F Q Q +Y+G +R
Sbjct: 240 FKGMGVESDQEIVQMIG---TEDYVMASFAPSLEECQKAQIFTQTQALRYLGNKVRRQRM 296
Query: 301 VGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDH 360
G ++ ++ A+E+L +L HV +F K Y ++ R++L G + DDRD+
Sbjct: 297 WGGPKKTKMEEARELLASLILTHVPVKEFNFRAKCIYLAVMVRRVILAQGGNKV-DDRDY 355
Query: 361 YGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGLK 418
YGNKRL+LAG LL LF LF+K +++ + + + ++ IT G+
Sbjct: 356 YGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQFDVVKHMRQDQITNGMV 415
Query: 419 YSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQW 470
+++TGNW R GV+QVL+ L++ S + + K++ PR L SQW
Sbjct: 416 NAISTGNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQW 475
Query: 471 GMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
GM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 476 GMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVED 521
>gi|367009214|ref|XP_003679108.1| hypothetical protein TDEL_0A05650 [Torulaspora delbrueckii]
gi|359746765|emb|CCE89897.1| hypothetical protein TDEL_0A05650 [Torulaspora delbrueckii]
Length = 1142
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 166/536 (30%), Positives = 277/536 (51%), Gaps = 62/536 (11%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI--EIRPE----- 65
+E +T E+ W ++ A+ + KGLV+Q LDSF+ F +++I+ + I ++ PE
Sbjct: 33 DEISTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLRKIIKANQLILSDVDPEFYLKY 92
Query: 66 SQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRV 120
GQ+S+ ++ YL+ P RLR++TYSAP+YVD+ +
Sbjct: 93 VDIRVGQRSNGSKDYLTPP--------------HECRLRDMTYSAPIYVDIEYTRGRNII 138
Query: 121 IKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMST 180
+ K + +P+MLRS+ C L+++ + + +L ECP D GGYFI+NG+EKV++ QE++S
Sbjct: 139 MHKDVEIGRMPVMLRSNKCILHESDEAMMAKLNECPLDPGGYFIVNGTEKVILVQEQLSK 198
Query: 181 NHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYI 240
N + V + ++ + + + + R T V + K S I
Sbjct: 199 NRIIV----EADEKKAIVQASVTSSTHERKSKTYVVTKNEKIYLKHNS-----------I 243
Query: 241 RTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYI 294
+IPI+++ +A G +D ++++ +C + D+ ++ +LEEA + Q Q +YI
Sbjct: 244 AEDIPIVVVLKACGIVSDLEVMQLVCGN--DSSYQDIFAINLEEAAKLNLYTQQQALEYI 301
Query: 295 GKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
G + TV + +++ E + ++ H+ +KA Y + R+++ +
Sbjct: 302 GSKVKTVRRQKLSVLQEGIEAIATTVIAHLTVEALDFREKALYIAIMTRRVVMAIYNPKM 361
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIK 409
DDRD+ GNKRL+LAG L+ LF LF+K D ++ + K + D L +
Sbjct: 362 VDDRDYVGNKRLELAGQLISLLFEDLFKKFNSDFKASIDKVLKKPNRAMEYDALLSINVH 421
Query: 410 AKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAK 461
+ IT GL +++TGNW RAGV+ VL+ L+Y S + S K++
Sbjct: 422 SNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSG 481
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
PR L SQ+GM+C A+TPEG+ACGLVKNLALM +IT PI + G E+
Sbjct: 482 PRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYLLGVEDI 537
>gi|240276965|gb|EER40475.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H143]
Length = 1227
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 170/537 (31%), Positives = 276/537 (51%), Gaps = 54/537 (10%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T ++ W ++ A+ + KGLV+Q +DS++ F + +++IV SA+I S +P
Sbjct: 98 NTAQDKWNLLPAFLKIKGLVKQHIDSYNYFVEVQLKKIVQASAEIR----SDVDPNFYIR 153
Query: 76 FAEIYLSKPMMTESDGET-----ATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGH 125
F +IYL P + + ++ +T+ RLR++TY+AP+ VD +RV + G
Sbjct: 154 FHDIYLGNPRRADEEQDSKFDLASTITPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGT 213
Query: 126 DGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYV 185
+P+MLRSS C L S+ + L ECP D GGYFI+NG+EKV++ QE++S N V V
Sbjct: 214 AIGRMPVMLRSSKCVLSNKSEAEMQLLQECPLDPGGYFIVNGTEKVILVQEQLSKNRVIV 273
Query: 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIP 245
+ + + + + S R + + R I+ + ++P
Sbjct: 274 ----ETDLKKEIVQASVTSSSNERKSKSYIILKKDR-----------IYMRHNVLSEDVP 318
Query: 246 IIILFRALGFTADEDIL---EHICYDFQDTQMMELLRPSLEEAFFIQNQ--QYIGKR--- 297
I+IL +A+G +D+++L I FQ+ + S++ + + Q+Q +YIG R
Sbjct: 319 IVILLKAMGIQSDKEMLLLVAGIDSTFQEDFAIN-FEESVKLSIYTQHQALEYIGSRIKI 377
Query: 298 ---GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
+ G+TR ++ A E + ++ HV + KA Y H+ R+L+
Sbjct: 378 NRKPNSFGITRRNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSL 437
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIK 409
DDRD+ GNKRL+LAG LL LF LF+K D++ + K + D AI
Sbjct: 438 VDDRDYVGNKRLELAGQLLALLFEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAIH 497
Query: 410 AKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAK 461
IT G+ +++TGNW RAGV+ VL+ L+Y + + + K++
Sbjct: 498 GNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMLTRISSQFEKTRKVSG 557
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PR L SQ+GM+CP++TPEG+ACGLVKNLALM +IT P+ + + G E+ +
Sbjct: 558 PRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLIFALGAEDVQ 614
>gi|296109333|ref|YP_003616282.1| RNA polymerase beta subunit [methanocaldococcus infernus ME]
gi|295434147|gb|ADG13318.1| RNA polymerase beta subunit [Methanocaldococcus infernus ME]
Length = 498
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 178/518 (34%), Positives = 274/518 (52%), Gaps = 56/518 (10%)
Query: 20 EAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDES--ADIEIRPESQHNPGQQSDFA 77
+ + +I AYF+E LV QL+S+++F +N +Q+IVDE D +I PE G + F
Sbjct: 2 DKYTLIDAYFKEHSLVEHQLESYNDFVENRLQKIVDEIGYVDTDI-PE-----GFKVKFG 55
Query: 78 EIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE--------- 128
+I L KP++ E+DG + AR+R +TYS P+Y+++T K+G + E
Sbjct: 56 KIKLGKPIIKEADGSIREITPMEARIREITYSVPIYLEMTPIYGKEGEEREGETLDVYIG 115
Query: 129 EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKK 188
E+P+ML S C LY S++ + ++GE P D GYFIING+EKVLI+QE + N + K
Sbjct: 116 ELPVMLGSKICLLYGKSEEEIIKMGEDPRDRFGYFIINGTEKVLISQEDLIPNRIICEKT 175
Query: 189 RQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIII 248
+ K VA++ S F + S G I+A P + +P +I
Sbjct: 176 EKSGKLVDVAKIFSTRSG--------FRALCSLEKYPDG----LIYANFPGVTGSVPFVI 223
Query: 249 LFRALGFTADEDILEHICYDFQDTQMMELLR--PSLEEAFFIQNQQ----YIGKRGATVG 302
L RALG D +I+E + + +ME+L + E + I Q+ +IGK+
Sbjct: 224 LMRALGAETDREIIEAVN---DERFVMEILLNIQEIREEYNINTQEEALDFIGKK-IVPN 279
Query: 303 VTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYG 362
T+EK I AK +L +LPH+G + KK + G + +L G R EDD+DH
Sbjct: 280 QTKEKRIARAKSVLCNYLLPHLGNTEESFYKKIKFLGIMARNVLELHFGYRTEDDKDHLA 339
Query: 363 NKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLA 422
KR+ LAG LL LFR F L D++ +++ K+ +++ A++ +T + ++A
Sbjct: 340 FKRVKLAGDLLEDLFRDAFSALVKDMKYQLERQCTRNKEPSIKAAVRGDLLTDRINSAMA 399
Query: 423 TGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNSQWGM 472
TG W G R GVSQ+L+ +Y +T + ++ P R+LH + WG
Sbjct: 400 TGTW-----IGGRTGVSQLLDRTSYLATNSQL--RRIVSPLSRSQPHFEARELHGTHWGK 452
Query: 473 MCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLE 510
+CP+ETPEGQ CGLVKN A+M IT ++EFL+
Sbjct: 453 ICPSETPEGQNCGLVKNFAIMAKITKKEDEKEVIEFLK 490
>gi|91082339|ref|XP_966549.1| PREDICTED: similar to RNA polymerase III 128kD subunit CG8344-PA
[Tribolium castaneum]
gi|270007487|gb|EFA03935.1| hypothetical protein TcasGA2_TC014075 [Tribolium castaneum]
Length = 1122
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 165/523 (31%), Positives = 272/523 (52%), Gaps = 54/523 (10%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
EE W ++ A+ + KGLV+Q +DSF+ F +++IV+ + + +P +
Sbjct: 17 EEKWKLVPAFLKVKGLVKQHIDSFNYFINVDIKKIVEANNKLV----CDADPLFYVKYTN 72
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVPIM 133
+Y+ +P + E + RLR++TYSAP+ VD+ T+RV K G +PIM
Sbjct: 73 VYVGRPDVDEGFNISKPTTPHECRLRDMTYSAPISVDIEYTRGTQRVSKAGLMIGRMPIM 132
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
LRSS C L S+ L ++ ECP D GGYF++ G EKV++ QE++S N + V + +K
Sbjct: 133 LRSSNCVLTNKSEYELAKMNECPLDPGGYFVVKGQEKVILIQEQLSKNRMIV----EESK 188
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILFRA 252
+ V S + SRT+ ++ Y+ H +L + +P+ I+F+A
Sbjct: 189 FGVQCAVTSSTHEKK-----------SRTNVVCKANKYYLGHNSLTDL---VPVSIIFKA 234
Query: 253 LGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ-----------NQQYIGKRGATV 301
L T+D++I E I + + L P+LEE ++ + + KR T
Sbjct: 235 LDVTSDKEICELI-----GVEDISKLTPTLEECHTLKIYTQLGALKHIGSKLVAKRYVTS 289
Query: 302 GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHY 361
+ + A+++L +L HV ++ KA Y G ++ R++ ++ DD+D+Y
Sbjct: 290 ASKMKTPVDEARDVLATTVLAHVPVENYNFRMKAIYLGVMVKRVIEAQSDKKFMDDKDYY 349
Query: 362 GNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGLKY 419
GNKRL+LAG LL +F +F++ +++S +K + + +++ IT L Y
Sbjct: 350 GNKRLELAGSLLSLMFEDVFKRFNWELKSIAEKTIPKIRATQFDVVKYMRSDLITNCLVY 409
Query: 420 SLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQWG 471
+++TGNW R GV+QVL+ L+Y S + + K++ PR L SQWG
Sbjct: 410 AISTGNWTIKRFRMERLGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWG 469
Query: 472 MMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
M+CP++TPEG+ACGLVKNLALM +IT YP++ G
Sbjct: 470 MLCPSDTPEGEACGLVKNLALMTHITTDVDEYPLIRLANNAGV 512
>gi|448527137|ref|XP_003869439.1| Ret1 protein [Candida orthopsilosis Co 90-125]
gi|380353792|emb|CCG23304.1| Ret1 protein [Candida orthopsilosis]
Length = 1149
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 174/532 (32%), Positives = 271/532 (50%), Gaps = 48/532 (9%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ 72
+E T E+ W ++ A+ + KGLV+Q LDSF+ F +++I++ ++ + S +P
Sbjct: 28 DEINTAEDKWNLLPAFLKIKGLVKQHLDSFNYFVDVDLKKILNANSLVL----SDVDPDF 83
Query: 73 QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV---TKRVIKKGHDGE- 128
+ +I + + + L RLR+LTYSAP+YVDV R I + +D E
Sbjct: 84 YVKYIDIRVGHKSTSPPGTKEVILPPHECRLRDLTYSAPIYVDVEYTRGRKIIRHYDLEI 143
Query: 129 -EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
+PIMLRS+ C L K + ++ ECP D GGYFI+NG+EKV++ QE++S N + V
Sbjct: 144 GRMPIMLRSNKCMLDGMDDKMMAQVDECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV-- 201
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+ ++ + + + + R T + + K S I +IPI+
Sbjct: 202 --EADEKKGIVQASVTSSTHERKSKTYVITKNDKIYLKHNS-----------ISEDIPIV 248
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQQ--YIGKRGATV 301
I+ +A G T+D +IL+ +C D +L + EEA F Q Q Y+GKR T+
Sbjct: 249 IVLKAAGVTSDLEILQLVCG--SDPNYQDLFVVNFEEAAKLEVFTQQQALLYLGKRVKTI 306
Query: 302 ---GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDR 358
G + ++ E + ++ H+ D +KA Y + R+++ + DDR
Sbjct: 307 RRAGAPKLSQLQEGIEAIATTIIAHLTVVDLQFREKALYMAMMARRVVMAMHNPKMVDDR 366
Query: 359 DHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIKAKTI 413
D+ GNKRL+LAG L+ LF LF+K D ++ + K + D L I + I
Sbjct: 367 DYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRTSEFDALLSINIHSNNI 426
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T GL +++TGNW RAGV+ VL+ L+Y S + S K++ PR L
Sbjct: 427 TMGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRAL 486
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
SQ+GM+C A+TPEG+ACGLVKNLALM +IT PI + G E+
Sbjct: 487 QPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEGPIKKLCTALGCESI 538
>gi|254584222|ref|XP_002497679.1| ZYRO0F11066p [Zygosaccharomyces rouxii]
gi|238940572|emb|CAR28746.1| ZYRO0F11066p [Zygosaccharomyces rouxii]
Length = 1143
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 167/537 (31%), Positives = 276/537 (51%), Gaps = 63/537 (11%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI--EIRPE----- 65
++ +T E+ W ++ A+ + KGLV+Q LDSF+ F +++I+ + I ++ PE
Sbjct: 33 DDVSTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDPEFYLKY 92
Query: 66 SQHNPGQQSDFA-EIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKR 119
GQ+S+ + + YL+ P RLR++TYSAP+YVD+
Sbjct: 93 VDIRVGQRSNASSKDYLTPP--------------HECRLRDMTYSAPIYVDIEYTRGRNI 138
Query: 120 VIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMS 179
++ K + +PIMLRS+ C L+ + +K + L ECP D GGYFI+NG+EKV++ QE++S
Sbjct: 139 IMHKDVEIGRMPIMLRSNKCILHNSDEKTMARLNECPLDPGGYFIVNGTEKVILVQEQLS 198
Query: 180 TNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPY 239
N + V + ++ + + + + R T V + K S
Sbjct: 199 KNRIIV----EADEKKAIVQASVTSSTHERKSKTYVVTKNDKIYLKHNS----------- 243
Query: 240 IRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QY 293
I E+PI+++ +A G +D ++++ +C + D+ ++ +LEEA + Q Q +Y
Sbjct: 244 IAEEVPIVVVLKACGIVSDLEVMQLVCGN--DSSYQDIFAVNLEEASKLGLYTQQQALEY 301
Query: 294 IGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRR 353
IG + TV + +++ E + ++ H+ +KA Y + R+++ +
Sbjct: 302 IGSKVKTVRRQKLSVLQEGIEAIATTVIAHLTVAALDFREKALYIAMMTRRVVMAMQNYK 361
Query: 354 AEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAI 408
DDRD+ GNKRL+LAG L+ LF LF+K D ++ + K + D L +
Sbjct: 362 MVDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKASIDKVLKKPNRAMEYDALLSINV 421
Query: 409 KAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLA 460
+ IT GL +++TGNW RAGV+ VL+ L+Y S + S K++
Sbjct: 422 HSNNITSGLSRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVS 481
Query: 461 KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
PR L SQ+GM+C A+TPEG+ACGLVKNLALM +IT PI + G E+
Sbjct: 482 GPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCFILGVEDI 538
>gi|225554621|gb|EEH02917.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces capsulatus
G186AR]
Length = 1227
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 170/537 (31%), Positives = 275/537 (51%), Gaps = 54/537 (10%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T ++ W ++ A+ + KGLV+Q +DS++ F + +++IV SA+I S +P
Sbjct: 98 NTAQDKWNLLPAFLKIKGLVKQHIDSYNYFVEVQLKKIVQASAEIR----SDVDPNFYIR 153
Query: 76 FAEIYLSKPMMTESDGET-----ATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGH 125
F +IYL P + + ++ +T+ RLR++TY+AP+ VD +RV + G
Sbjct: 154 FHDIYLGNPRRADEEQDSKFDLASTITPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGT 213
Query: 126 DGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYV 185
+P+MLRSS C L S+ + L ECP D GGYFI+NG+EKV++ QE++S N V V
Sbjct: 214 AIGRMPVMLRSSKCVLSNKSEAEMQLLQECPLDPGGYFIVNGTEKVILVQEQLSKNRVIV 273
Query: 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIP 245
+ + + + + S R + + R I+ + ++P
Sbjct: 274 ----ETDLKKEIVQASVTSSSNERKSKSYIILKKDR-----------IYMRHNVLSEDVP 318
Query: 246 IIILFRALGFTADEDIL---EHICYDFQDTQMMELLRPSLEEAFFIQNQ--QYIGKR--- 297
I+IL +A+G +D+++L I FQ+ + S++ + Q+Q +YIG R
Sbjct: 319 IVILLKAMGIQSDKEMLLLVAGIDSTFQEDFAIN-FEESVKLGIYTQHQALEYIGSRIKI 377
Query: 298 ---GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
+ G+TR ++ A E + ++ HV + KA Y H+ R+L+
Sbjct: 378 NRKPNSFGITRRNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSL 437
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIK 409
DDRD+ GNKRL+LAG LL LF LF+K D++ + K + D AI
Sbjct: 438 VDDRDYVGNKRLELAGQLLALLFEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAIH 497
Query: 410 AKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAK 461
IT G+ +++TGNW RAGV+ VL+ L+Y + + + K++
Sbjct: 498 GNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSG 557
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PR L SQ+GM+CP++TPEG+ACGLVKNLALM +IT P+ + + G E+ +
Sbjct: 558 PRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLIFALGAEDVQ 614
>gi|148642971|ref|YP_001273484.1| DNA-directed RNA polymerase subunit beta'' [Methanobrevibacter
smithii ATCC 35061]
gi|148551988|gb|ABQ87116.1| DNA-dependent RNA polymerase, subunit B, RpoB [Methanobrevibacter
smithii ATCC 35061]
Length = 514
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 167/533 (31%), Positives = 278/533 (52%), Gaps = 61/533 (11%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
E W ++ A+F++ LV + S+++F + +Q I+D + P + N +
Sbjct: 3 ENNWKLVDAFFDKYDLVDHHIKSYNDFINSGIQNIIDIT-----EPITLENGKYTLKTGK 57
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE-------EVP 131
+++ KP E+DG + ++ ARLRNL YSA +Y+++ + ++G D E+P
Sbjct: 58 LFIEKPFTKEADGSKSMIYPAEARLRNLNYSAHMYLEMA--LNEEGEDNPLEKVYIGELP 115
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
+ML+S C L+ S + L E GE P D GGYFI+NGSE+ ++ E+++ N + + +
Sbjct: 116 VMLKSDICHLHGLSDEELIEQGEDPQDLGGYFIVNGSERAVVTMEEIAPNKIILERIGDV 175
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFR 251
A V S+ F +S K SG ++ + PY+ EIP++IL R
Sbjct: 176 EDRRAKAIVTSIKSG--------FRARISLEYKKPRKSGVFLRISFPYVPGEIPLVILLR 227
Query: 252 ALGFTADEDILEHICYDFQDTQMM--ELLRPSLEEAFFIQNQ------------------ 291
ALG ++I+ I D + QM+ + ++ SL + Q +
Sbjct: 228 ALGLATGQEIITAISND-PNFQMIIADDIQVSLSQLKLDQKEMDGMDKEERRQYLQLAAI 286
Query: 292 QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+YIG R A G+T E IK A++++ + +LPH+G KA Y + LL
Sbjct: 287 KYIGNRVAK-GMTEEYRIKRAEDVINRYLLPHMGIESERREAKATYLAEMTEMLLQVIDE 345
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
+R D+DHY NKRL ++G L+ LFR F LT D+ +++ + GK+++++ A+++
Sbjct: 346 QREPHDKDHYTNKRLRVSGDLMEDLFRVAFTSLTRDMSYQLERSISRGKELSIKQAVRSD 405
Query: 412 TITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP--------- 462
+T +K+++ATGNW G RAGVSQ+L+ +Y T ++ ++ P
Sbjct: 406 VLTENIKHAIATGNW-----VGGRAGVSQLLDRTSYMGTLSHL--RRVVSPLTRSQPHFE 458
Query: 463 -RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
R LH +Q+G +CP ETPEG CGLVKNLALM I+ GS I++ +++
Sbjct: 459 ARDLHPTQFGKICPNETPEGPNCGLVKNLALMCNISEGSDEQEIIDVIKKMNV 511
>gi|448103831|ref|XP_004200136.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
gi|359381558|emb|CCE82017.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
Length = 1158
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 171/529 (32%), Positives = 263/529 (49%), Gaps = 48/529 (9%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T E+ W ++ A+ + KGLV+Q LDSF+ F +++I+ + + S +P
Sbjct: 36 NTTEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANELVL----SDVDPEFYLK 91
Query: 76 FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEV 130
+ +I + + + L RLR+LTYSAP+YVDV K ++ K + +
Sbjct: 92 YLDIRVGHKSSSPPGTKEVNLAPHECRLRDLTYSAPIYVDVEYTRGRKIIMHKDLEIGRM 151
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
PIMLRS+ C L + + + ECP D GGYFI+NG+EKV++ QE++S N + V +
Sbjct: 152 PIMLRSNKCILDGIDEHKMAQYDECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEK 211
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILF 250
N + + + + R T + + K S I ++PI+I+
Sbjct: 212 KN----IVQASVTSSTHERKSKTYVITKNDKIYLKHNS-----------IAEDVPIVIVL 256
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATV--- 301
+A G T+D +IL+ +C QD +L + EEA Q Q YIGKR T+
Sbjct: 257 KAAGITSDLEILQLVC--GQDPNYQDLFAVNFEEAARLEVLTQQQALNYIGKRVKTIRRA 314
Query: 302 GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHY 361
G + ++ E + ++ H+ D +KA Y + R+L+ + DDRD+
Sbjct: 315 GAPKLSQLQEGIEAVATTIIAHITVSDLQFREKALYIATMTRRVLMTMHNPKMVDDRDYV 374
Query: 362 GNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIKAKTITGG 416
GNKRL+LAG LL LF LF+K D ++ + K + D L I + IT G
Sbjct: 375 GNKRLELAGQLLSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINIHSNNITMG 434
Query: 417 LKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNS 468
+ +++TGNW RAGV+ VL+ L+Y S + S K++ PR L S
Sbjct: 435 MNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPS 494
Query: 469 QWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
Q+GM+C ++TPEG+ACGLVKNLALM +IT P+ G EN
Sbjct: 495 QFGMLCTSDTPEGEACGLVKNLALMTHITTDDEELPVKNLCFTLGCENI 543
>gi|448100132|ref|XP_004199280.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
gi|359380702|emb|CCE82943.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
Length = 1158
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 171/529 (32%), Positives = 263/529 (49%), Gaps = 48/529 (9%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T E+ W ++ A+ + KGLV+Q LDSF+ F +++I+ + + S +P
Sbjct: 36 NTTEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANELVL----SDVDPEFYLK 91
Query: 76 FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEV 130
+ +I + + + L RLR+LTYSAP+YVDV K ++ K + +
Sbjct: 92 YLDIRVGHKSSSPPGTKEVNLAPHECRLRDLTYSAPIYVDVEYTRGRKIIMHKDLEIGRM 151
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
PIMLRS+ C L + + + ECP D GGYFI+NG+EKV++ QE++S N + V +
Sbjct: 152 PIMLRSNKCILDGIDEHKMAQYDECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEK 211
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILF 250
N + + + + R T + + K S I ++PI+I+
Sbjct: 212 KN----IVQASVTSSTHERKSKTYVITKNDKIYLKHNS-----------IAEDVPIVIVL 256
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATV--- 301
+A G T+D +IL+ +C QD +L + EEA Q Q YIGKR T+
Sbjct: 257 KAAGITSDLEILQLVC--GQDPNYQDLFAVNFEEAARLEVLTQQQALNYIGKRVKTIRRA 314
Query: 302 GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHY 361
G + ++ E + ++ H+ D +KA Y + R+L+ + DDRD+
Sbjct: 315 GAPKLSQLQEGIEAVATTIIAHITVSDLQFREKALYIATMTRRVLMTMHNPKMVDDRDYV 374
Query: 362 GNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIKAKTITGG 416
GNKRL+LAG LL LF LF+K D ++ + K + D L I + IT G
Sbjct: 375 GNKRLELAGQLLSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINIHSNNITMG 434
Query: 417 LKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNS 468
+ +++TGNW RAGV+ VL+ L+Y S + S K++ PR L S
Sbjct: 435 MNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPS 494
Query: 469 QWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
Q+GM+C ++TPEG+ACGLVKNLALM +IT P+ G EN
Sbjct: 495 QFGMLCTSDTPEGEACGLVKNLALMTHITTDDEELPVKNLCFTLGCENI 543
>gi|288931148|ref|YP_003435208.1| RNA polymerase subunit beta [Ferroglobus placidus DSM 10642]
gi|288893396|gb|ADC64933.1| RNA polymerase beta subunit [Ferroglobus placidus DSM 10642]
Length = 491
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 167/510 (32%), Positives = 268/510 (52%), Gaps = 54/510 (10%)
Query: 27 AYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMM 86
AYF LVR QLDSF+ F + +Q+++DE IE+ E+ + E+ L +P +
Sbjct: 10 AYFTHDRLVRHQLDSFNRFIEERLQKVIDEQGIIELDIENTY-----VVLGEVKLDRPKV 64
Query: 87 TESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE-------VPIMLRSSYC 139
E+DG L+ ARLRNLTY++P+++ +V+ +G +E +P+M++S C
Sbjct: 65 KEADGTEHLLYPVEARLRNLTYASPIWLKC--QVVDEGAPQQEEWVKIGMLPVMVKSKIC 122
Query: 140 TLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAE 199
LY K ++ GE P D GGYFIINGSE+ L+ E ++ N + + ++ KY E
Sbjct: 123 NLY--GVKDTSKFGEDPLDPGGYFIINGSERALVTLEDLAPNKIILERE---EKYGEPVE 177
Query: 200 VCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADE 259
V SQ + V +R + + T P I I +++ RALG +D+
Sbjct: 178 VAKCF-SQRSGYRALVVVERNRNNI--------LEVTFPQIPKPIQFVVMMRALGVESDQ 228
Query: 260 DILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEI 315
+I+E + +D ++M+ + ++E A ++ Q+ YIG+R A G ++E I+ A ++
Sbjct: 229 EIVEMVS---EDPEIMKFMLENVEVAE-VETQEEAIDYIGRRVAP-GQSKEYRIERATQV 283
Query: 316 LQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGG 375
+ LPH+GT KA++ + + LG R EDD+DHY NKRL LAG L+
Sbjct: 284 IDHYFLPHIGTEKEARRAKAFFLARMAEAVFELYLGYRMEDDKDHYANKRLKLAGDLMEE 343
Query: 376 LFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTR 435
+FR F +L DV+ +++ G+ + + A+++ +T L + +ATGNW G R
Sbjct: 344 IFRVAFLRLIKDVKYQLERAKVRGRQLRMSTAVRSDVLTDRLMHPMATGNW-----VGGR 398
Query: 436 AGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNSQWGMMCPAETPEGQACG 485
GVSQ+++ Y S ++ ++ P R LH +QWG +CP ETPEG CG
Sbjct: 399 TGVSQLIDRHNYMSLLSHL--RRVVSPLSRSQPHFEARDLHPTQWGRICPNETPEGPNCG 456
Query: 486 LVKNLALMVYITIGSAAYPILEFLEEWGTE 515
LVKN A +++G I+ L G E
Sbjct: 457 LVKNFAQYAEVSVGVDENEIINVLYSLGVE 486
>gi|403182564|gb|EJY57481.1| AAEL017156-PA [Aedes aegypti]
Length = 1134
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 168/525 (32%), Positives = 271/525 (51%), Gaps = 50/525 (9%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
E+ W ++ A+ + KGLV+Q +DSF+ F ++ IV + +++ S +P +
Sbjct: 23 EDKWKLVPAFLQIKGLVKQHIDSFNYFINVDIKNIVRANDEVK----SDADPCFYLKYLN 78
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVPIM 133
+ + P + E T + RLR++TY+AP+ VD+ T+RV++ +PIM
Sbjct: 79 VSIGMPDVEEGFNNTKSTTPHECRLRDMTYAAPITVDIEYTRGTQRVVRNNLLIGRMPIM 138
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
LRSS C L S+ L+++ ECP D GGYF+I G+EKV++ QE++S N K
Sbjct: 139 LRSSNCVLTGKSEYELSQVNECPMDPGGYFVIRGTEKVILIQEQVSWN------KMITED 192
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
Y V + + + + TI + + K S + EIP+ I+F+A+
Sbjct: 193 YNNVIQCQVTSSTHEKKSRTILLSKHGKYYLKHNS-----------MTEEIPVAIIFKAM 241
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ-------QYIGKRGATVG 302
G +D++I++ + D T+ + PSL EA + Q + + I KR T
Sbjct: 242 GIASDQEIMQLVGID---TETQKRFAPSLLEATNHKVYTQQRALEYMGSKLIAKRFTTAA 298
Query: 303 VTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYG 362
+ A+++L +L HV +F KA Y +I R++ + + A DDRD+YG
Sbjct: 299 TKYKTTADEARDLLATTILAHVPVPNFNFQVKAIYVALMIRRVMAAEVDKSAVDDRDYYG 358
Query: 363 NKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGLKYS 420
NKRL+LAG LL +F LF++ +++ K + K ++A I+ GL+ +
Sbjct: 359 NKRLELAGSLLSLMFEDLFKRFNWELKMIADKNIPKIKAAQFDVVKHMRAALISTGLETA 418
Query: 421 LATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQWGM 472
++TGNW RAGV+QVL+ L+Y S + + K++ PR L SQWGM
Sbjct: 419 ISTGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGM 478
Query: 473 MCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
+CP++TPEG+ACGLVKNLALM +IT P++ G E+
Sbjct: 479 LCPSDTPEGEACGLVKNLALMTHITTEVDEEPVIRLAYNSGVEDI 523
>gi|255950612|ref|XP_002566073.1| Pc22g21780 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593090|emb|CAP99466.1| Pc22g21780 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1208
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 171/534 (32%), Positives = 277/534 (51%), Gaps = 55/534 (10%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T + W ++ A+ + KGLV+Q +DS++ F + M++IV+ S+ IR + HN F
Sbjct: 84 TARDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQMKKIVESSS--TIRSDVDHN--FYIKF 139
Query: 77 AEIYLSKPMMTESDGE-----TATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHD 126
+IY++ P + G+ +T+ + RLR+ TY+AP+ VD +RVI++
Sbjct: 140 TDIYVASPRRADEQGDGGLDFESTITPQECRLRDTTYAAPILVDFEYVRGRQRVIRRAVP 199
Query: 127 GEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVF 186
+P+MLRSS C L + ++ L ECP D GGYF++NG+EKV++ QE++S N + V
Sbjct: 200 IGRIPMMLRSSKCVLSNKTPAQMSVLNECPLDPGGYFVVNGTEKVILVQEQLSKNRIIV- 258
Query: 187 KKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPI 246
+ P K A V S S N S ++ S KG ++ + +IPI
Sbjct: 259 -ETDPKKDIVQASVTS---SSNERKSKSYI-----VSKKG-----RLYVKHNVLNEDIPI 304
Query: 247 IILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQ---NQQYIGKRGATVGV 303
+IL +A+G D+++++ + D D + + EEA + QQ + G + +
Sbjct: 305 VILLKAMGIHTDKEMMQMVTGD--DALYQDDFAINFEEAINVDVYTQQQALDWIGCRIKI 362
Query: 304 TREKM------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDD 357
R++ ++ A E + ++ H+ D KA Y H+ R+L+ DD
Sbjct: 363 NRKQAAYRKTHVQEAVEAIASVIISHIEVKDMNFRPKAIYVAHMARRVLMAKSDPALVDD 422
Query: 358 RDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQF------AIKAK 411
RD+ GNKRL+LAG +L LF LF+K D++ + K + N ++ QF +
Sbjct: 423 RDYLGNKRLELAGQMLALLFEDLFKKFCFDIKMNIDKVL-NKRNRAEQFDAWTIVTMHGN 481
Query: 412 TITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPR 463
IT G+ +++TGNW RAGV+ VL+ L+Y + + + K++ PR
Sbjct: 482 HITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPR 541
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
L SQ+GM+CPA+TPEG+ACGLVKNLALM +IT P+ + G E+
Sbjct: 542 ALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTNDEEGPVRNLIFMLGVEDI 595
>gi|116753352|ref|YP_842470.1| DNA-directed RNA polymerase subunit beta'' [Methanosaeta
thermophila PT]
gi|116664803|gb|ABK13830.1| DNA-directed RNA polymerase, subunit B' [Methanosaeta thermophila
PT]
Length = 496
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 160/496 (32%), Positives = 263/496 (53%), Gaps = 48/496 (9%)
Query: 27 AYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMM 86
AYF + LV ++SF+EF +Q+++DE IE E+ + +I + KP++
Sbjct: 10 AYFTKDKLVHHHINSFNEFIDRGLQKVIDEVRIIETNIENTY-----VKLGKIRVEKPVV 64
Query: 87 TESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV-------PIMLRSSYC 139
E+DG L+ ARLRNLTY++P+ ++++ ++ +G + E V PIM+ S C
Sbjct: 65 MEADGSVERLYPNDARLRNLTYASPIKLEMS--IVDRGEEKEPVEAMIGMLPIMVMSKVC 122
Query: 140 TLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAE 199
LY S++ + GE P D GGYFI+NGSE+V++ E ++ N + V ++ +++ VA+
Sbjct: 123 NLYGMSEEEMVSYGEDPLDPGGYFIVNGSERVIMTLEDLAPNKILVEYNQRYDEFIEVAK 182
Query: 200 VCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADE 259
V S + S + V R+ + + P + I + L RALG D
Sbjct: 183 VFSQRQGYR---SLVIVERGKRS---------ILEVSFPSVAGRINFVTLVRALGLETDM 230
Query: 260 DILEHICYDFQDTQMMELLRPSLEEAFFIQNQQYIGKRGATV--GVTREKMIKYAKEILQ 317
DI++ + + ++M+ + +LEEA ++ + K G V G +E K A +L
Sbjct: 231 DIVKAVS---DNPEIMKFMLENLEEAEVSTTEEALEKIGNRVAAGQAKEYQKKRAAYVLD 287
Query: 318 KEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF 377
+ +LPH+G + KA + + ALG+R EDD+DHY NKRL L+G L+ LF
Sbjct: 288 RYLLPHIGVEEKDRYAKALFLSRMAEACFELALGKRGEDDKDHYANKRLKLSGDLMEDLF 347
Query: 378 RTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAG 437
R F +LT D++ +++ +++N+ ++A +T + + LATGNW G R G
Sbjct: 348 RVAFNRLTRDIKYQLERASMRNRELNVITTVRADVLTERMIHPLATGNW-----VGGRTG 402
Query: 438 VSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNSQWGMMCPAETPEGQACGLV 487
VSQ+L+ Y ++ ++ ++ P R LH +QWG +CP+ETPEG CGLV
Sbjct: 403 VSQLLDRTDYMASLSHL--RRVISPLSRSQPHFETRDLHATQWGRICPSETPEGPNCGLV 460
Query: 488 KNLALMVYITIGSAAY 503
KN A V ++ G Y
Sbjct: 461 KNFAQGVELSKGVEDY 476
>gi|154277042|ref|XP_001539366.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Ajellomyces
capsulatus NAm1]
gi|150414439|gb|EDN09804.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Ajellomyces
capsulatus NAm1]
Length = 1186
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 170/537 (31%), Positives = 275/537 (51%), Gaps = 54/537 (10%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T ++ W ++ A+ + KGLV+Q +DS++ F + +++IV SA+I S +P
Sbjct: 66 NTAQDKWNLLPAFLKIKGLVKQHIDSYNYFVEVQLKKIVQASAEIR----SDVDPNFYIR 121
Query: 76 FAEIYLSKPMMTESDGET-----ATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGH 125
F +IYL P + + ++ +T+ RLR++TY+AP+ VD +RV + G
Sbjct: 122 FHDIYLGNPRRADEEQDSKFDLASTITPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGT 181
Query: 126 DGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYV 185
+P+MLRSS C L S+ + L ECP D GGYFI+NG+EKV++ QE++S N V V
Sbjct: 182 AIGRMPVMLRSSKCVLSNKSEAEMQLLQECPLDPGGYFIVNGTEKVILVQEQLSKNRVIV 241
Query: 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIP 245
+ + + + + S R + + R I+ + ++P
Sbjct: 242 ETDLKKD----IVQASVTSSSNERKSKSYIILKKDR-----------IYMRHNVLSEDVP 286
Query: 246 IIILFRALGFTADEDIL---EHICYDFQDTQMMELLRPSLEEAFFIQNQ--QYIGKR--- 297
I+IL +A+G +D+++L I FQ+ + S++ + Q+Q +YIG R
Sbjct: 287 IVILLKAMGIQSDKEMLLLVAGIDSTFQEDFAIN-FEESVKLGIYTQHQALEYIGSRIKI 345
Query: 298 ---GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
+ G+TR ++ A E + ++ HV + KA Y H+ R+L+
Sbjct: 346 NRKPNSFGITRRNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSL 405
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIK 409
DDRD+ GNKRL+LAG LL LF LF+K D++ + K + D AI
Sbjct: 406 VDDRDYVGNKRLELAGQLLALLFEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAIH 465
Query: 410 AKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAK 461
IT G+ +++TGNW RAGV+ VL+ L+Y + + + K++
Sbjct: 466 GNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSG 525
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PR L SQ+GM+CP++TPEG+ACGLVKNLALM +IT P+ + + G E+ +
Sbjct: 526 PRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEQPVRKLIFALGAEDVQ 582
>gi|91773160|ref|YP_565852.1| DNA-directed RNA polymerase subunit beta'' [Methanococcoides
burtonii DSM 6242]
gi|91712175|gb|ABE52102.1| DNA-directed RNA polymerase subunit B'' [Methanococcoides burtonii
DSM 6242]
Length = 542
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 164/483 (33%), Positives = 262/483 (54%), Gaps = 46/483 (9%)
Query: 35 VRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGETA 94
++ +DS+++F ++ +Q+I++E IE E + +I + P++ E+DG
Sbjct: 1 MQHHIDSYNKFVKHGLQKIINEQGIIETDLEDIY-----VKLGKIRVEHPVVKEADGAIE 55
Query: 95 TLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE-------EVPIMLRSSYCTLYQNSQK 147
L+ ARLRNL+YSAPL+++++ V++ G +GE ++P+M++S C L S
Sbjct: 56 KLYPNEARLRNLSYSAPLFLEMS--VVQNGEEGEPKEAKVGQLPVMIKSDICNLVGISDA 113
Query: 148 ALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQ 207
+ + GE P D GGYFI+NG+E+V++ E ++ N + +Y EV + SQ
Sbjct: 114 EMVQHGEDPLDPGGYFIVNGTERVVMTLEDLAPNKILT---ELGERYGDSIEVSKVF-SQ 169
Query: 208 NRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICY 267
R + V R S + + P I I I L RALG DED+ + +
Sbjct: 170 RRGYRALVVVERGRKS--------LLEISFPSISGRINFITLMRALGVETDEDVAKIVS- 220
Query: 268 DFQDTQMMELLRPSLEEA--FFIQNQ-QYIGKRGATVGVTREKMIKYAKEILQKEMLPHV 324
D ++M+ + +LEEA F I++ + IG R A+ G RE +K A ++ + +LPH+
Sbjct: 221 --TDPEIMKFMFENLEEAEVFTIEDAIEKIGGRVAS-GQAREYQMKRANYVIDRYLLPHL 277
Query: 325 GTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKL 384
G KA++ G + AL RR++DD+DHY NKRL L G L+ LFR F +L
Sbjct: 278 GNDPADRIPKAHFLGRMAESCFELALKRRSDDDKDHYSNKRLKLTGDLMEDLFRVAFNRL 337
Query: 385 TGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNC 444
DV+ +++ +++N+ ++A +T L++ LATGNW G R+GVSQ+L+
Sbjct: 338 ARDVKYQLERANMRNRELNVATLVRADVLTDRLQHPLATGNW-----VGGRSGVSQLLDR 392
Query: 445 LTYASTFTYYL----SWKLAKP----RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 496
Y ST ++ A+P R LH +QWG +CP+ETPEG CGLVKN A MV +
Sbjct: 393 TDYISTLSHLRRVISPLSRAQPHFEARDLHPTQWGRLCPSETPEGPNCGLVKNFAQMVEL 452
Query: 497 TIG 499
+ G
Sbjct: 453 STG 455
>gi|384497113|gb|EIE87604.1| DNA-directed RNA polymerase III subunit RPC2 [Rhizopus delemar RA
99-880]
Length = 1146
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 183/560 (32%), Positives = 280/560 (50%), Gaps = 67/560 (11%)
Query: 1 MMMEEERLEEDEEEETTQE---------------EAWAVISAYFEEKGLVRQQLDSFDEF 45
M+ ++E +E D E QE + W ++ A+ + KGLV+Q +DSF+ F
Sbjct: 1 MVRKDEDMEVDSLESLKQEYYQGKHLAEPVKEIEDKWKLLPAFLKVKGLVKQHIDSFNYF 60
Query: 46 NQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRN 105
+Q+I+ + + S +P + I + P T+ D + RLR+
Sbjct: 61 VNVDLQKIIKANEKVT----SDVDPHFYLKYTGIRVGMPERTDDDVANRSYTPHECRLRD 116
Query: 106 LTYSAPLYVDVT----KRVIKKGHDG-EEVPIMLRSSYCTLYQNSQKALTELGECPYDEG 160
LTYSA ++VDV ++++K+ + +PIMLRSS+C L ++ L + ECP D G
Sbjct: 117 LTYSANIFVDVEYTRGRQIVKRKNVMIGRLPIMLRSSHCVLSGKNEAELARMKECPLDPG 176
Query: 161 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLS 220
GYF++ G+EKV++ QE++S N + V ++ N VA V S + + + + IFV
Sbjct: 177 GYFVVKGTEKVILVQEQLSKNRIIVDVDKKNN---IVANVQS-STHERKSKTAIFV---- 228
Query: 221 RTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHIC---YDFQDTQMMEL 277
K G I+ I +IP+ I +ALG +D +I + +C +D DT + +
Sbjct: 229 ----KNGK----IYLKHNSISEDIPVAIFLKALGVQSDREIAQLVCGDDHDLHDTFSINI 280
Query: 278 LRPSLEEAFF-IQNQQYIG-------KRGATVGVTREKMIKYAKEILQKEMLPHVGTGDF 329
S F +Q YIG K G TV R+ M + A E+L +L HV +
Sbjct: 281 EESSRLRVFTQMQALDYIGAKVKVNRKMGPTV---RKTMAEEALEVLATVILAHVPVENL 337
Query: 330 CETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVR 389
+K+ Y +I R+L DDRD+ GNKRL+LAG LL LF LF+K D++
Sbjct: 338 NFREKSIYAAVMIRRVLAAMSDEVQVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNSDLK 397
Query: 390 SYVQKCVDNGK-----DVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNC 444
K + D+ Q + IT G +++TGNW RAG++QVL+
Sbjct: 398 MNADKVLKKPNRTQEFDIFNQLVLHGDHITSGFIRAISTGNWVLKRFKMDRAGITQVLSR 457
Query: 445 LTYASTF--------TYYLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 496
L+Y S + + K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +I
Sbjct: 458 LSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHI 517
Query: 497 TIGSAAYPILEFLEEWGTEN 516
T PI + G E+
Sbjct: 518 TTDQEEDPIRKIAFALGVED 537
>gi|383862931|ref|XP_003706936.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Megachile
rotundata]
Length = 1132
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 167/521 (32%), Positives = 268/521 (51%), Gaps = 46/521 (8%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
++ W ++ A+ + KGLV+Q +DSF+ F +++IV + + S +P +
Sbjct: 24 QDKWKLVPAFLKGKGLVKQHIDSFNYFINTEIKKIVKANEKVL----SDADPLFYVKYLN 79
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT-----KRVIKKGHDGEEVPIM 133
+++ P + E T RLR+L YSAP+ VD+ + +I+ +PIM
Sbjct: 80 VHVGSPDVEEGFNVTRPTTPHECRLRDLNYSAPITVDIEYIRGHQPIIRNNLLIGRMPIM 139
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
LRSS C L S L ++ ECP+D GGYF+ING EKV++ QE+M N + + + NK
Sbjct: 140 LRSSNCVLTGKSHFELAKMNECPHDPGGYFVINGQEKVILIQEQMLRNRIIL---EEDNK 196
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
VA C+ + + + + I G G+Y + + +IP+ I+F+A+
Sbjct: 197 GCIVAS-CNSSTHERKTKTNII-----------GKGGRY-YMRHNIFQDDIPVTIIFKAM 243
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIG--KRGATVGVTR 305
G +D++I++ I + + M+ PSLEE F QNQ +++ ++ V +
Sbjct: 244 GIVSDQEIMQLIG---TEEEFMKKFAPSLEECHVLNVFAQNQALRFLNNKRKQKRFSVIK 300
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
+ K+IL +L HV DF KA Y +I +++ + DDRD+YGNKR
Sbjct: 301 SSITDEMKDILATNVLSHVPVVDFNFKMKATYIALMIRKVMKAQSDGKLVDDRDYYGNKR 360
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGLKYSLAT 423
L+LAG LL +F LF++ +++ K + K ++ IT GL +++++
Sbjct: 361 LELAGSLLSLMFEDLFKRFNWELKQIADKNIPKIKAAQFDIVKHMRQDQITNGLAFAISS 420
Query: 424 GNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQWGMMCP 475
GNW R GV+QVL+ L+Y S + + K++ PR L SQWGM+CP
Sbjct: 421 GNWTIKRFKMERHGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCP 480
Query: 476 AETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
++TPEG+ CGLVKNLALM +IT PI+ G EN
Sbjct: 481 SDTPEGEGCGLVKNLALMTHITTEIDEEPIIRLAFNLGVEN 521
>gi|296809049|ref|XP_002844863.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma otae CBS
113480]
gi|238844346|gb|EEQ34008.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma otae CBS
113480]
Length = 1211
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 173/537 (32%), Positives = 270/537 (50%), Gaps = 55/537 (10%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T+ + W ++ A+ + KGLV+Q +DS++ F + +++IV SA+I S +P
Sbjct: 83 NTERDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAEIR----SDIDPKFYIK 138
Query: 76 FAEIYLSKPMMTESDGE----TATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHD 126
F +IYL P T+ + +T+ RLR++TY+AP+ VD +RV + G
Sbjct: 139 FHDIYLGTPRRTDEEQSGIKVDSTITPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTA 198
Query: 127 GEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVF 186
+P+MLRSS C L S + + L ECP D GGYFI+NG+EKV++ QE++S N V V
Sbjct: 199 IGRMPVMLRSSKCVLSNKSAREMYTLHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIV- 257
Query: 187 KKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPI 246
+ + + + + S R + + R I+ + +IPI
Sbjct: 258 ---ETDSKKEIVQASVTSSSHERKSKSYIIMKKGR-----------IYLRHNVLNDDIPI 303
Query: 247 IILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKR--- 297
+IL +A+G +D+++L + D + E + EEA F Q Q +Y+G R
Sbjct: 304 VILLKAMGIQSDKEML--LLVAGVDLEYQEDFAINFEEAIKLGIFTQQQALEYLGARIKI 361
Query: 298 ---GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRA 354
+ G R + A E + ++ HV D KA Y ++ R+L+ L
Sbjct: 362 NRKASGFGPARRNYVAEAIEAISSVIISHVQVQDMNFRPKALYVTYMARRVLMAKLDPSL 421
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN-----GKDVNLQFAIK 409
DDRD+ GNKRL+LAG LL LF LF+K D++ + K + D AI
Sbjct: 422 VDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAYPVVAIH 481
Query: 410 AKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAK 461
IT G+ ++ATGNW RAGV+ VL+ L+Y + + + K++
Sbjct: 482 GNHITQGMNRAIATGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSG 541
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PR L SQ+GM+C ++TPEG+ACGLVKNLALM +IT P+ + + G E+ +
Sbjct: 542 PRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTNDEEEPVQKLVFTLGAEDIQ 598
>gi|402589446|gb|EJW83378.1| DNA-directed RNA polymerase [Wuchereria bancrofti]
Length = 947
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 172/543 (31%), Positives = 277/543 (51%), Gaps = 58/543 (10%)
Query: 8 LEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQ 67
+E+ EE T ++ W ++ A+ + +GLV+Q + S+D F +++I+ + I S
Sbjct: 1 MEKTTEEVQTIKDKWTLVPAFLQVRGLVKQHIASYDYFVSTEIKKILRANDRIT----SD 56
Query: 68 HNPGQQSDFAEIYLSKPMMTESDGE-TATLFLKAARLRNLTYSAPLYVDV-----TKRVI 121
NP + +I + P E + + RLR++TYSAP+ VD+ ++RV+
Sbjct: 57 ANPSFYLKYLDIRVGMPSSEEGFNQINDKISPHECRLRDMTYSAPISVDIEYTRGSQRVL 116
Query: 122 KKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTN 181
+ G ++P+MLRSS C L ++ L + ECPYD GGYFII GSEKV++ QE++S N
Sbjct: 117 RNGLIIGKMPVMLRSSKCVLKNMNESELARVQECPYDPGGYFIIRGSEKVVLIQEQLSKN 176
Query: 182 HVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIR 241
+ + + +K EV ++ +Q R T S Q + +
Sbjct: 177 RIMIGRN---SKKELQCEV--LSSTQERKSKTYI-----------ASRKQRYYVRHNQLS 220
Query: 242 TEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQYIGKRGATV 301
++P+ I+F+A+GF +D DI+ + + + + + PS+EE + Q + + GA
Sbjct: 221 DDVPVAIVFKAMGFESDHDIVSAVGL---EEKFVAAMAPSIEEC---ASHQIVTQEGALQ 274
Query: 302 GV-TREKMIKY---------------AKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRL 345
+ ++ KM K+ A + L M+ HV D KA Y G ++ RL
Sbjct: 275 YIASKVKMRKFGPTASGTSTLPREHEAIDFLSNLMIAHVPCPDGNMKMKAVYLGLMVRRL 334
Query: 346 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQ 405
+ +G DDRD YGNKRL+LAG LL LF +F++ +++ + L
Sbjct: 335 MQAEVGDTECDDRDFYGNKRLELAGSLLALLFEDVFKRFNSELKRIADNSLGKTLAAPLD 394
Query: 406 FA--IKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYL 455
++ IT L +LATGNW R GV+QVL+ L+Y S T+
Sbjct: 395 IVKHVRQDLITNALVDALATGNWTIKRFKMERQGVTQVLSRLSYISVLGMMTRINSTFEK 454
Query: 456 SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
+ K++ PR L SQWGM+CP++TPEG++CGLVKNLAL+ +IT S P++ L G E
Sbjct: 455 TRKVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALISHITTDSDEKPVIRLLYNAGVE 514
Query: 516 NFE 518
+ +
Sbjct: 515 DVK 517
>gi|354546082|emb|CCE42811.1| hypothetical protein CPAR2_204540 [Candida parapsilosis]
Length = 1149
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 174/532 (32%), Positives = 271/532 (50%), Gaps = 48/532 (9%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ 72
+E T E+ W ++ A+ + KGLV+Q LDSF+ F +++I+ ++ + S +P
Sbjct: 28 DEINTAEDKWNLLPAFLKIKGLVKQHLDSFNYFVDVDLKKILKANSLVL----SDVDPDF 83
Query: 73 QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV---TKRVIKKGHDGE- 128
+ +I + + + L RLR+LTYSAP+YVDV R I + +D E
Sbjct: 84 YVKYIDIRVGHKSTSPPGTKEVILPPHECRLRDLTYSAPIYVDVEYTRGRKIIRHYDLEI 143
Query: 129 -EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
+PIMLRS+ C L K + ++ ECP D GGYFI+NG+EKV++ QE++S N + V
Sbjct: 144 GRMPIMLRSNKCMLDGMDDKMMAQVDECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV-- 201
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+ ++ + + + + R T + + K S I +IPI+
Sbjct: 202 --EADEKKGIVQASVTSSTHERKSKTYVITKNDKIYLKHNS-----------ISEDIPIV 248
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQQ--YIGKRGATV 301
I+ +A G T+D +IL+ +C + Q +L + EEA F Q Q Y+GKR T+
Sbjct: 249 IVLKAAGVTSDLEILQLVCGSNSNYQ--DLFVVNFEEAAKLEVFTQQQALLYLGKRVKTI 306
Query: 302 ---GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDR 358
G + ++ E + ++ H+ D +KA Y + R+++ + DDR
Sbjct: 307 RRAGAPKLSQLQEGIEAIATTIIAHLTVVDLQFREKALYMAVMARRVIMAMHNPKMVDDR 366
Query: 359 DHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIKAKTI 413
D+ GNKRL+LAG L+ LF LF+K D ++ + K + D L I + I
Sbjct: 367 DYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRTSEFDALLSINIHSNNI 426
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T GL +++TGNW RAGV+ VL+ L+Y S + S K++ PR L
Sbjct: 427 TMGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRAL 486
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
SQ+GM+C A+TPEG+ACGLVKNLALM +IT PI + G E+
Sbjct: 487 QPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEENPIKKLCTALGCESI 538
>gi|170579233|ref|XP_001894738.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Brugia malayi]
gi|158598542|gb|EDP36414.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Brugia malayi]
Length = 1104
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 172/540 (31%), Positives = 275/540 (50%), Gaps = 52/540 (9%)
Query: 8 LEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQ 67
+E+ E T ++ W ++ A+ + +GLV+Q + S+D F +++I+ + I S
Sbjct: 2 MEKITGEVQTIKDKWTLVPAFLQVRGLVKQHIASYDYFVSTEIKKILRANDKIT----SD 57
Query: 68 HNPGQQSDFAEIYLSKPMMTESDGE-TATLFLKAARLRNLTYSAPLYVDV-----TKRVI 121
NP + +I++ P E + + RLR++TYSAP+ VD+ ++RV+
Sbjct: 58 ANPSFYLKYLDIHVGMPSSEEGFNQINDKISPHECRLRDMTYSAPISVDIEYTRGSQRVL 117
Query: 122 KKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTN 181
+ G ++P+MLRSS C L ++ L + ECPYD GGYFII GSEKV++ QE++S N
Sbjct: 118 RNGLIIGKMPVMLRSSKCVLKNMNESELARVQECPYDPGGYFIIRGSEKVVLIQEQLSKN 177
Query: 182 HVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIR 241
+ + + +K E+ ++ +Q R T S Q + +
Sbjct: 178 RIMIGRN---SKKELQCEI--LSSTQERKSKTYI-----------ASKKQRYYVRHNQLS 221
Query: 242 TEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF------------FIQ 289
++PI I+F+A+GF +D DI+ + + + + + PS+EE +I
Sbjct: 222 DDVPIAIIFKAMGFESDHDIVSAVGL---EEKFVAAMAPSIEECASHQIVTQEGALQYIA 278
Query: 290 NQQYIGKRG-ATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLC 348
++ I K G AT G + A + L M+ HV D KA Y G ++ RL+
Sbjct: 279 SKVKIRKFGPATSGTSTLPREHEAIDFLSNLMIAHVPCPDGNMKMKAVYLGLMVRRLMQA 338
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA- 407
+G DDRD YGNKRL+LAG LL LF +F++ +++ + L
Sbjct: 339 EVGDTECDDRDFYGNKRLELAGSLLALLFEDVFKRFNSELKRIADNSLGKTLAAPLDIVK 398
Query: 408 -IKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWK 458
++ IT L +LATGNW R GV+QVL+ L+Y S T+ + K
Sbjct: 399 HVRQDLITNALVDALATGNWTIKRFKMERQGVTQVLSRLSYISVLGMMTRINSTFEKTRK 458
Query: 459 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
++ PR L SQWGM+CP++TPEG++CGLVKNLAL+ +IT S P++ L G E+ +
Sbjct: 459 VSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALLSHITTDSDEKPVIRLLYNAGVEDVK 518
>gi|325094900|gb|EGC48210.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
Length = 1227
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 169/538 (31%), Positives = 273/538 (50%), Gaps = 56/538 (10%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T ++ W ++ A+ + KGLV+Q +DS++ F + +++IV SA+I S +P
Sbjct: 98 NTAQDKWNLLPAFLKIKGLVKQHIDSYNYFVEVQLKKIVQASAEIR----SDVDPNFYIR 153
Query: 76 FAEIYLSKPMMTESDGET-----ATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGH 125
F +IYL P + + ++ +T+ RLR++TY+AP+ VD +RV + G
Sbjct: 154 FHDIYLGNPRRADEEQDSKFDLASTITPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGT 213
Query: 126 DGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYV 185
+P+MLRSS C L S+ + L ECP D GGYFI+NG+EKV++ QE++S N V V
Sbjct: 214 AIGRMPVMLRSSKCVLSNKSEAEMQLLQECPLDPGGYFIVNGTEKVILVQEQLSKNRVIV 273
Query: 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIP 245
+ + + + + S R + + R I+ + ++P
Sbjct: 274 ----ETDLKKEIVQASVTSSSNERKSKSYIILKKDR-----------IYMRHNVLSEDVP 318
Query: 246 IIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI------QNQQYIGKR-- 297
I+IL +A+G +D+++L + D+ E + EE+ + Q +YIG R
Sbjct: 319 IVILLKAMGIQSDKEML--LLVAGIDSTFQEDFAINFEESVKLGICTQHQALEYIGSRIK 376
Query: 298 ----GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRR 353
+ G+TR ++ A E + ++ HV + KA Y H+ R+L+
Sbjct: 377 INRKPNSFGITRRNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPS 436
Query: 354 AEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAI 408
DDRD+ GNKRL+LAG LL LF LF+K D++ + K + D AI
Sbjct: 437 LVDDRDYVGNKRLELAGQLLALLFEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAI 496
Query: 409 KAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLA 460
IT G+ +++TGNW RAGV+ VL+ L+Y + + + K++
Sbjct: 497 HGNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMLTRISSQFEKTRKVS 556
Query: 461 KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PR L SQ+GM+CP++TPEG+ACGLVKNLALM +IT P+ + + G E+ +
Sbjct: 557 GPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLIFALGAEDVQ 614
>gi|219116230|ref|XP_002178910.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409677|gb|EEC49608.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1211
Score = 268 bits (684), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 175/540 (32%), Positives = 272/540 (50%), Gaps = 54/540 (10%)
Query: 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNP 70
D+ + + W ++ + + L+RQ +DSFD F MQ+IV + EIR S+H+P
Sbjct: 57 DDAPVGSLRDKWRLLPYFLRLRSLLRQHIDSFDHFVDVEMQQIVQSPSACEIR--SEHDP 114
Query: 71 GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT-----KRVIKKGH 125
+ ++ +P + E + RLR+ TYSAP+YV+V + V+K+
Sbjct: 115 KFYLRYEACWVGEPSVEEDSYSVKSATPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKRKV 174
Query: 126 DGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYV 185
+PIMLRS C L S+ L + ECPYD GGYF+I G EKV++ QE++S N V +
Sbjct: 175 MIGRMPIMLRSKKCLLRDRSEDDLAGMKECPYDPGGYFVIKGVEKVILIQEQLSKNRVIL 234
Query: 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIP 245
+ + +A + S + R + R K + G +IP
Sbjct: 235 ----EEDNKGIMASITS--STHERKSKAYILIKNGRVYLKNNTLGD-----------DIP 277
Query: 246 IIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI------QNQQYIGKRGA 299
+ ++ +A+G +D ++++ + ++ ++ L SLEE + Q ++IG +
Sbjct: 278 VAVVLKAMGIESDLELVQLVG---SESPIINALALSLEEPSRLGIHTQAQALRFIGAKIR 334
Query: 300 TVGVTREKMIKY---------AKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCAL 350
Y A+E+L +L HV F +KA Y GHI+ R+LL L
Sbjct: 335 GRSGPSGPSSSYRKNVSPEDEAREVLANVVLSHVPVTHFDFREKALYIGHIVRRVLLVHL 394
Query: 351 GRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVR---SYVQKCVDNGKDVNLQFA 407
G+ DD+D+YGNKRL+LAG LL LF LF+ D++ V + + ++
Sbjct: 395 GKMPLDDKDYYGNKRLELAGNLLSLLFEDLFKIFNKDLKRQADLVLSKPNRTQAFDVVKT 454
Query: 408 IKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKL 459
I+ TIT G+ ++ATGNW RAGV+QVL+ L+Y S + + K+
Sbjct: 455 IRPDTITNGMINAIATGNWVLKRFRMDRAGVTQVLSRLSYMSALGMMTRINSQFEKTRKV 514
Query: 460 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSA-AYPILEFLEEWGTENFE 518
+ PR L SQWGM+CPA+TPEG+ACGLVKNLAL+ +IT A PI + G E+ +
Sbjct: 515 SGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLGHITTDEADTRPIERICRDLGVEDVK 574
>gi|449276422|gb|EMC84954.1| DNA-directed RNA polymerase III subunit RPC2, partial [Columba
livia]
Length = 1105
Score = 267 bits (683), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 173/523 (33%), Positives = 268/523 (51%), Gaps = 59/523 (11%)
Query: 24 VISAY-FEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLS 82
++ AY F+ KGLV+Q +DSF+ F +++I+ + + S +P + IY+
Sbjct: 1 LLPAYIFQVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKYLNIYVG 56
Query: 83 KPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVPIMLRSS 137
P + ES T + RLR++TYSAP+ VD+ ++R+I+ +PIMLRSS
Sbjct: 57 TPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSS 116
Query: 138 YCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 197
C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R+
Sbjct: 117 NCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRK------- 169
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIR-----TEIPIIILFRA 252
T+ + S T K + + Y+R +IPI I+F+A
Sbjct: 170 --------------GTVGASVTSSTHEKKSRTNMVVKQGRFYLRHNTLSEDIPIAIIFKA 215
Query: 253 LGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIG---KRGATVGV 303
+G +D++I++ I + +M PSLEE F Q Q +YIG +R G
Sbjct: 216 MGVESDQEIVQMIG---TEEHVMAAFAPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGG 272
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
++ ++ A+E+L +L HV +F K Y ++ R++L A G DDRD+YGN
Sbjct: 273 PKKTKMEEARELLASTILTHVLVKEFNFRAKCIYTAVMVRRVIL-AQGENKVDDRDYYGN 331
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGLKYSL 421
KRL+LAG LL LF LF+K +++ + + + ++ IT G+ ++
Sbjct: 332 KRLELAGQLLSLLFEDLFKKFNSELKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAI 391
Query: 422 ATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQWGMM 473
+TGNW R GV+QVL+ L+Y S + + K++ PR L SQWGM+
Sbjct: 392 STGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGML 451
Query: 474 CPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 452 CPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLASNLGVED 494
>gi|149238948|ref|XP_001525350.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146450843|gb|EDK45099.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1157
Score = 267 bits (683), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 169/533 (31%), Positives = 273/533 (51%), Gaps = 48/533 (9%)
Query: 12 EEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPG 71
E+E T E+ W ++ A+ + KGLV+Q LDSF+ F +++I+ ++ + S +P
Sbjct: 31 EDEINTAEDKWNLLPAFLKIKGLVKQHLDSFNYFVDTDLKKILKANSLVL----SDVDPD 86
Query: 72 QQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV---TKRVIKKGHDGE 128
+ +I + + + L RLR+LTYSAP+YVDV R I + +D E
Sbjct: 87 FYVKYLDIRVGHKSTSAPGTKEVILPPHECRLRDLTYSAPIYVDVEYTRGRKIIRHNDLE 146
Query: 129 --EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVF 186
+P+MLRS+ C L ++ + ++ ECP D GGYF++NG+EKV++ QE++S N + V
Sbjct: 147 IGRMPVMLRSNKCMLDGLDERQMAQVDECPLDPGGYFVVNGTEKVILVQEQLSKNRIIV- 205
Query: 187 KKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPI 246
+ + + + + + R T + + K S G+ ++PI
Sbjct: 206 ---EADDKKGIVQASVTSSTHERKSKTYVITKNGKIYLKHNSIGE-----------DVPI 251
Query: 247 IILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQQ--YIGKRGAT 300
+I+ +A G T+D +IL+ +C + +L + EEA F Q Q Y+GKR T
Sbjct: 252 VIVLKAAGITSDLEILQLVCG--SNPHYQDLFVVNFEEAARLEVFTQQQALLYLGKRVKT 309
Query: 301 V---GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDD 357
+ G + ++ E + ++ H+ + +KA+Y + R+++ + DD
Sbjct: 310 IRRAGAPKLSQLQEGIEAIATTIVAHLTVSNLQFKEKAFYMAMMARRVVMAMHNPKMVDD 369
Query: 358 RDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIKAKT 412
RD+ GNKRL+LAG L+ LF LF+K D ++ + K + D L I +
Sbjct: 370 RDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRTTEFDALLSINIHSNN 429
Query: 413 ITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQ 464
IT GL +++TGNW RAGV+ VL+ L+Y S + S K++ PR
Sbjct: 430 ITMGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRA 489
Query: 465 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
L SQ+GM+C A+TPEG+ACGLVKNLALM +IT PI + G E+
Sbjct: 490 LQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEELPIKKLCIALGCESI 542
>gi|213402277|ref|XP_002171911.1| DNA-directed RNA polymerase III subunit RPC2 [Schizosaccharomyces
japonicus yFS275]
gi|211999958|gb|EEB05618.1| DNA-directed RNA polymerase III subunit RPC2 [Schizosaccharomyces
japonicus yFS275]
Length = 1160
Score = 267 bits (683), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 174/527 (33%), Positives = 273/527 (51%), Gaps = 48/527 (9%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T E+ W ++ A+ + KGLV+Q LDS++ F +++IV+ + I S P +
Sbjct: 41 TIEDKWELLPAFLKVKGLVKQHLDSYNYFVDVDLKKIVEANQKIT----SDVEPWFYLKY 96
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT----KRVIKKGH-DGEEVP 131
+I + +P+ T+ D ++ RLR+LTY A ++VD+ ++V+++ + +P
Sbjct: 97 LDIRVGQPVRTDLDAIQHSISPHECRLRDLTYGANIFVDIEYTRGRQVVRRRNVPIGRMP 156
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
+MLRS+ C LY S+K L L ECP D GGYF++ G+EKV++ QE++S N + V + +P
Sbjct: 157 VMLRSNKCVLYGKSEKELAALNECPLDPGGYFVVKGTEKVILVQEQLSKNRIIV--EAEP 214
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFR 251
+K + A V S + R T V R K S + +IPI+I +
Sbjct: 215 SKEMWQASVTS--STHERKSKTYVVTKNGRLYMKHNS-----------VNEDIPIVIALK 261
Query: 252 ALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI------QNQQYIG---KRGATVG 302
A+G +D +I E + + Q +L PS+EEA + Q YIG K G
Sbjct: 262 AMGLQSDREIFELVAGSEANYQ--DLFAPSVEEAAKLNVYTTEQALNYIGSHVKVNRRAG 319
Query: 303 VTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYG 362
R + A E+L +L H+ + KA Y + R+L+ + DDRD+ G
Sbjct: 320 AARLPPHEEALEVLAAVVLAHISVVNLDFRPKAVYVAMMARRVLMAMVDPSQVDDRDYVG 379
Query: 363 NKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIKAKTITGGL 417
NKRL+LAG LL LF LF+K D++ + K + D Q ++ IT G+
Sbjct: 380 NKRLELAGQLLALLFEDLFKKFNSDLKLNIDKVLKKPNRTQEFDAYNQLSMHGDHITQGM 439
Query: 418 KYSLATGNWGQGNAAGTRAGVSQVLNCLTYAS--------TFTYYLSWKLAKPRQLHNSQ 469
+L+TGNW RAGV+ VL+ L++ S T + + K++ PR L SQ
Sbjct: 440 VRALSTGNWSLKRFKMERAGVTHVLSRLSFISALGMMTRITSQFEKTRKVSGPRSLQPSQ 499
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
+GM+C ++TPEG+ACGLVKNLALM +IT P++ +G E+
Sbjct: 500 FGMLCTSDTPEGEACGLVKNLALMTHITTDEEEGPLIRLAYAFGVED 546
>gi|326429748|gb|EGD75318.1| RNA polymerase II [Salpingoeca sp. ATCC 50818]
Length = 1139
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 164/524 (31%), Positives = 271/524 (51%), Gaps = 48/524 (9%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
E+ W ++ ++ + KGLVRQ +DSF+ F + + IV ++ I S NP ++
Sbjct: 36 EDKWRLLPSFLQLKGLVRQHVDSFNHFVEIDIHNIVKANSKIV----SDVNPRVYLEYTS 91
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV-----PIM 133
I + +P++ + + RLRN TY+AP++V+V + + + ++ PIM
Sbjct: 92 IRVGEPVIQNGPFDDHDVTPMECRLRNTTYAAPMHVNVRLSLSGEVRNYNDILIGRLPIM 151
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
LRS C L++ + + + ++GECP D GGYFII G+EKV++ QE++S N + V + R
Sbjct: 152 LRSKKCRLFKANDEQMAKMGECPLDPGGYFIIGGTEKVILMQEQLSKNRIIVERDRHGEM 211
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
A V + S R TI + K G+ + + ++P++++ +A+
Sbjct: 212 SASVT-----SSSAERKTKTII-------NMKRGN----FMLKVNMLAEDVPLVVVLKAM 255
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGAT----VGV 303
G T+D++IL+ I D Q MEL PSL++ F Q+Q +Y+G + G
Sbjct: 256 GMTSDQEILQFIG---ADEQSMELFGPSLQQCAELEVFTQDQALRYLGTKVRIPRREYGP 312
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
+R A+ IL +L H+ +F K Y + R++ + DDRD+YGN
Sbjct: 313 SRRTKEDEARSILASVVLSHIEVRNFDMRPKCIYLCVMARRMIAAIRNKSGGDDRDYYGN 372
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD--NGKDVNLQFAIKAKTITGGLKYSL 421
KRL+LAG L+ LF F+ L G ++ + + + I+A IT + Y++
Sbjct: 373 KRLELAGSLMALLFEDSFKTLNGRIKRELDHTFVRVTARAFDPAQIIRANPITQAINYAI 432
Query: 422 ATGNWGQGNAAGTRAGVSQVLNCLTYAS--------TFTYYLSWKLAKPRQLHNSQWGMM 473
++GNW RAGV+ VL+ L++ + T + + K++ PR L SQWGM+
Sbjct: 433 SSGNWNLKRFRMERAGVTSVLSRLSFIAALGMMTRITSQFEKTRKVSGPRSLQPSQWGML 492
Query: 474 CPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
CP++TPEG+ CGLVKNLALM Y+T+ P++ G E
Sbjct: 493 CPSDTPEGETCGLVKNLALMSYVTVDVDEAPLIRLAYNLGVEGL 536
>gi|340500807|gb|EGR27654.1| RNA polymerase ii second largest subunit, putative
[Ichthyophthirius multifiliis]
Length = 1194
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 184/548 (33%), Positives = 282/548 (51%), Gaps = 71/548 (12%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS--DF 76
++ W +I +YF+E L QQ++S+D F Q+ Q + E I I+P+++++ Q + DF
Sbjct: 14 QDCWNIIDSYFQENNLCTQQINSYDNFIQSIPQ--IMEEQKIRIKPQNKYSLKQNNELDF 71
Query: 77 AE----IYLSKPMMTESDGETATLFLKAARLRNLTYSAPL-------------------- 112
+ KP S + +F AR+ +L YS +
Sbjct: 72 ENTQYIVSFEKPQKAPSYNQR--IFPTQARISDLDYSLEIKIPIKLVKETFNPETGKLDV 129
Query: 113 --YVDVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEK 170
VD K VI H +P M++S C+L+ S + + GEC +D+GGYFII G EK
Sbjct: 130 KNLVDPNKNVITLAH----IPAMVQSKQCSLHGLSLQQRIQTGECKHDQGGYFIIKGQEK 185
Query: 171 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSG 230
V+IAQE+M+ N +YVFK+ ++ ++AE+ S+ S + M K +
Sbjct: 186 VIIAQERMAYNFIYVFKQND-DRIPWIAEIRSICGKITGIQSKFIIKM------KKKNEE 238
Query: 231 QYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQ---MMELLRPSLEEAFF 287
+ YI +IP+ ILF+AL D I+E+I +D + + MELLR SL
Sbjct: 239 IQLFWRSKYISDDIPMFILFKALNIIKDRQIMEYIFHDIKSRENQTQMELLRDSLLLCSK 298
Query: 288 IQNQ----QYIGKR--GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHI 341
+++ YIG R ++ + ++ +K AK IL +LPH+G + +KA++ G++
Sbjct: 299 VKSVNSALNYIGLRVLASSKNIGKQDAVKAAKNILNYYLLPHIGQDEKSLHQKAFFVGYM 358
Query: 342 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQ-KCVDNGK 400
I +LL A + EDDRDHYG KR+D++G LL LF+ + + +Q K +
Sbjct: 359 IKKLLNAANNKCIEDDRDHYGKKRMDISGNLLSQLFKERVSQFIKRGKMMLQEKFSKIFR 418
Query: 401 DVNLQFAIKA-----KTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLT-YASTFTY 453
D N F++K K I+ LK ++ATGNWG + R GVSQ L T + +T +
Sbjct: 419 DSNACFSLKNDIFDHKIISDALKAAIATGNWGVTADGEVARTGVSQQLKRDTCFFATLSN 478
Query: 454 YLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIG---SAA 502
K KPRQLHNS +GM+CPAETPEGQ G++KN+A M +++G
Sbjct: 479 MRRVTAPQRQISKQTKPRQLHNSHYGMICPAETPEGQNIGMIKNMAFMTQVSLGLQERDN 538
Query: 503 YPILEFLE 510
ILEFLE
Sbjct: 539 LQILEFLE 546
>gi|344229872|gb|EGV61757.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Candida tenuis ATCC 10573]
Length = 1165
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 174/538 (32%), Positives = 268/538 (49%), Gaps = 63/538 (11%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIV--DESADIEIRPESQHNPGQQ 73
T E+ W ++ A+ + KGLV+Q LDSF+ F +++I+ +E ++ PE
Sbjct: 39 NTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANELVLSDVDPE-------- 90
Query: 74 SDFAEIYLSKPMMTESDGETA-------TLFLKAARLRNLTYSAPLYVDV-----TKRVI 121
F YL + +S TA L RLR+LTYSAP+YVDV K ++
Sbjct: 91 --FYLKYLDIRVGCKSSTSTAKGLSKEVNLVPHDCRLRDLTYSAPIYVDVEYTRGRKIIV 148
Query: 122 KKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTN 181
+ + +PIMLRS+ C L K + + ECP D GGYFI+NG+EKV++ QE++S N
Sbjct: 149 HRDLEIGRMPIMLRSNKCLLDGIDDKKMAKYDECPLDPGGYFIVNGTEKVILVQEQLSKN 208
Query: 182 HVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIR 241
+ V + ++ + + + + R T + + K S I
Sbjct: 209 RIIV----EADEKKGIVQASVTSSTHERKSKTYVITKNDKIYLKHNS-----------IS 253
Query: 242 TEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIG 295
++PI+I+ +A G T+D +IL+ +C + D +L + EEA F Q Q Y+G
Sbjct: 254 EDVPIVIILKAAGITSDLEILQLVCGN--DPNYQDLFAINFEEAAKLEIFTQQQALHYVG 311
Query: 296 KRGATV---GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGR 352
KR T+ G + ++ E + ++ H+ D +KA Y + R+L+
Sbjct: 312 KRVKTIRRAGAPKLSQLQEGIEAIATTIIAHITVSDLQFREKALYIAMMTRRVLMTMENP 371
Query: 353 RAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFA 407
+ DDRD+ GNKRL+LAG L+ LF LF+K D ++ + K + D L
Sbjct: 372 KMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRASEFDALLSIN 431
Query: 408 IKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKL 459
I + IT G+ +++TGNW RAGV+ VL+ L+Y S + S K+
Sbjct: 432 IHSNNITMGMNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKV 491
Query: 460 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
+ PR L SQ+GM+C ++TPEG+ACGLVKNLALM +IT PI G E+
Sbjct: 492 SGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKRLCFILGCEDI 549
>gi|258571555|ref|XP_002544581.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237904851|gb|EEP79252.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 1202
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 175/540 (32%), Positives = 274/540 (50%), Gaps = 58/540 (10%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T+++ W ++ A+ + KGLV+Q +DS++ F + +++IV SA+I S +P
Sbjct: 71 NTEKDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIR----SDVDPNFYIR 126
Query: 76 FAEIYLSKPMMTESDGETATLFL-------KAARLRNLTYSAPLYVDV-----TKRVIKK 123
F +IYL P + + T F RLR++TY+AP+ VD +RV +
Sbjct: 127 FHDIYLGSPRRADEEQSEDTRFKVESTITPNECRLRDMTYAAPILVDFEYVRGRQRVKRN 186
Query: 124 GHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHV 183
G +P+MLRSS C L + S + +L ECP D GGYFI+NG+EKV++ QE++S N V
Sbjct: 187 GTAIGRMPVMLRSSKCVLSKKSPGEMYQLHECPLDPGGYFIVNGTEKVILVQEQLSKNRV 246
Query: 184 YVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTE 243
V + P K A V S S N S ++ + I+ + +
Sbjct: 247 IV--ETDPKKEIVQASVTS---SSNERKSKSYIIL----------KKDRIYLRHNVLSDD 291
Query: 244 IPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIG-- 295
+PI+I+ +A+G +D+++L + D+ E + EE+ + Q Q +Y+G
Sbjct: 292 VPIVIILKAMGIQSDKEML--LLVAGVDSVYQEDFAINFEESIKLGIYTQQQALEYLGSH 349
Query: 296 ----KRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
++ + G R I+ A E + ++ HV + KA Y H+ R+L+
Sbjct: 350 IKIMRKPNSFGGVRRNYIQEAVEAIASVIISHVQVENMNFRPKALYVAHMARRVLMAKHD 409
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN-----GKDVNLQF 406
DDRD+ GNKRL+LAG LL LF LF+K D++ + K + D
Sbjct: 410 PSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAFSVV 469
Query: 407 AIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWK 458
AI IT G+ +++TGNW RAGV+ VL+ L+Y S + + K
Sbjct: 470 AIHGNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYISALGMMTRISSQFEKTRK 529
Query: 459 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
++ PR L SQ+GM+CPA+TPEG+ACGLVKNLALM +IT P+ + + G E+ +
Sbjct: 530 VSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTNDEEEPVRKLVYALGAEDVQ 589
>gi|20090129|ref|NP_616204.1| DNA-directed RNA polymerase subunit beta'' [Methanosarcina
acetivorans C2A]
gi|19915109|gb|AAM04684.1| DNA-directed RNA polymerase, subunit B [Methanosarcina acetivorans
C2A]
Length = 550
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 169/497 (34%), Positives = 260/497 (52%), Gaps = 44/497 (8%)
Query: 20 EAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEI 79
E+ + AYF +V+ +DSF++F +Q+I+DE IE E + +I
Sbjct: 5 ESSILSQAYFTRDKIVQHHIDSFNKFIDYGLQKIIDEQKIIETDIEDTY-----LKLGKI 59
Query: 80 YLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE-------EVPI 132
+ P++ E+DG L+ ARLRNL+YS PLY++++ V+K+G + E ++PI
Sbjct: 60 RVEHPVVKEADGAIEKLYPNEARLRNLSYSGPLYLEMS--VVKEGIESEVMEAKIGQLPI 117
Query: 133 MLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN 192
M++S C L S+ GE P D GGYFII G+E+V++ E ++ N + V
Sbjct: 118 MVKSKICNLLGLSEPEKVRYGEDPLDPGGYFIIGGTERVVMTLEDLAPNKILV---EYGE 174
Query: 193 KYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRA 252
+Y EV + SQ R + + R S + + P I + I L RA
Sbjct: 175 RYGDSIEVAKVF-SQKRGYRALVIVERGRKS--------LLEVSFPSISGRVYFITLMRA 225
Query: 253 LGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQYIGKRGATV--GVTREKMIK 310
LG DEDI+ + D ++++ + +LEEA ++ I K GA V G +E IK
Sbjct: 226 LGIVTDEDIVNAVS---SDPEIIKFMLENLEEAEVETQEEAIEKIGARVAAGQAKEYQIK 282
Query: 311 YAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 370
A ++ + + PH+G KA++ + ALG+R EDD+DHY NKRL LAG
Sbjct: 283 RANYVIDRYLFPHLGNDMRDRISKAHFLARMAESCFELALGKRTEDDKDHYANKRLKLAG 342
Query: 371 PLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGN 430
L+ LFR F +L D++ +++ +++N+ ++A +T L++ LATGNW
Sbjct: 343 DLMEDLFRVSFNRLARDIKYQLERANMRNRELNVATIVRADVLTDRLQHPLATGNW---- 398
Query: 431 AAGTRAGVSQVLNCLTYASTFTYYLS----WKLAKP----RQLHNSQWGMMCPAETPEGQ 482
G R GVSQ+L+ Y ST ++ A+P R LH +QWG +CP+ETPEG
Sbjct: 399 -VGGRTGVSQLLDRNDYISTLSHLRRVISPLSRAQPHFEARDLHATQWGRLCPSETPEGP 457
Query: 483 ACGLVKNLALMVYITIG 499
CGLVKN A MV ++ G
Sbjct: 458 NCGLVKNFAQMVELSTG 474
>gi|295658889|ref|XP_002790004.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226282087|gb|EEH37653.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1205
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 170/538 (31%), Positives = 273/538 (50%), Gaps = 56/538 (10%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T ++ W ++ A+ + KGLV+Q +DS++ F + +++IV SA+I S +P
Sbjct: 76 NTAKDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIR----SDVDPNFYIR 131
Query: 76 FAEIYLSKPMMTESDGET-----ATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGH 125
F +IYL P + + ++ +T+ RLR++TY++P+ VD +RV + G
Sbjct: 132 FHDIYLGTPRRADEEQDSNFNAASTITPNECRLRDMTYASPILVDFEYVRGRQRVKRNGT 191
Query: 126 DGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYV 185
+P+MLRSS C L S+ + L ECP D GGYFI+NG+EKV++ QE++S N V V
Sbjct: 192 AIGRMPVMLRSSKCVLSNKSEAEMQLLQECPLDPGGYFIVNGTEKVILVQEQLSKNRVIV 251
Query: 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIP 245
+ + + + + S R + + R I+ + ++P
Sbjct: 252 ----ETDLKKEIVQASVTSSSNERKSKSYIILKKER-----------IYVRHNVLNEDVP 296
Query: 246 IIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKR-- 297
I+IL +A+G +D+++L + D+ E + EEA + Q+Q +YIG R
Sbjct: 297 IVILLKAMGIQSDKEML--LLVAGIDSTYQEDFAINFEEAVKLGIYTQHQALEYIGSRIK 354
Query: 298 ----GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRR 353
GV R ++ A E + ++ HV + KA Y H+ R+L+
Sbjct: 355 INRKPNNFGVIRRNYVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPS 414
Query: 354 AEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAI 408
DDRD+ GNKRL+LAG LL LF LF+K D++ + K + D AI
Sbjct: 415 LVDDRDYVGNKRLELAGQLLSLLFEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAI 474
Query: 409 KAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLA 460
IT G+ +++TGNW RAGV+ VL+ L+Y + + + K++
Sbjct: 475 HGNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVS 534
Query: 461 KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
PR L SQ+GM+CP++TPEG+ACGLVKNLALM +IT P+ + + G E+ +
Sbjct: 535 GPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLIFALGAEDVQ 592
>gi|89274910|gb|ABD65896.1| RNA polymerase II second largest subunit, partial
[Gloeocystidiellum porosum]
Length = 429
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 133/235 (56%), Positives = 164/235 (69%), Gaps = 9/235 (3%)
Query: 293 YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGR 352
+IG RG TVG++RE+ ++YA+EILQKEMLPH+ + E+KKAY+FG++IHRLLL A+ R
Sbjct: 5 FIGNRGTTVGLSRERRLRYAQEILQKEMLPHISMSEGSESKKAYFFGYMIHRLLLAAMER 64
Query: 353 RAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKT 412
R DDRDH+G KRLDLAGPLL LFR LFRKLT DV Y+QKCV++ K+ NL AIK T
Sbjct: 65 RELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVESHKEFNLNLAIKHNT 124
Query: 413 ITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLSW--------KLAKPR 463
IT GLKYSLATGNWG Q + +AGVSQVLN TYAST ++ K+AKPR
Sbjct: 125 ITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPR 184
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
QLHN LVKNLALM I++GS + P+++FLEEWG E+ E
Sbjct: 185 QLHNXXXXXXXXXXXXXXXXXXLVKNLALMSTISVGSLSAPVIDFLEEWGLESLE 239
>gi|256811202|ref|YP_003128571.1| DNA-directed RNA polymerase subunit beta'' [Methanocaldococcus
fervens AG86]
gi|256794402|gb|ACV25071.1| RNA polymerase beta subunit [Methanocaldococcus fervens AG86]
Length = 497
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 169/518 (32%), Positives = 275/518 (53%), Gaps = 50/518 (9%)
Query: 24 VISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSK 83
++ AYF+E GL+ Q++S+++F +N +Q+I+DE IE ++ + G + ++ + K
Sbjct: 4 LVDAYFKEHGLIDHQIESYNDFVENRLQKIIDEVGYIE----TEISGGFKVKLGKVKIGK 59
Query: 84 PMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE---------EVPIML 134
P++ E+DG + AR+R+LTYS PLY+++T + + + E+P+ML
Sbjct: 60 PVIKEADGSIRPITPMEARIRDLTYSVPLYLEMTPIIGEGEEEVVGETVEVYIGELPVML 119
Query: 135 RSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKY 194
S C LY S++ L ELGE P D GYFIING+EKVLI QE + N + K + K
Sbjct: 120 GSKICHLYGKSKEELIELGEDPEDPFGYFIINGTEKVLITQEDLIPNRILCEKAERSGKI 179
Query: 195 AYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALG 254
VA+V S F + + G ++AT P + +IP++IL +ALG
Sbjct: 180 VDVAKVFSTRHG--------FRALCTVERHPDG----LLYATFPGMPGQIPLVILMKALG 227
Query: 255 FTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQN-------QQYIGKRGATVGVTREK 307
D+DI+E I D + + +++E N ++IG+R A G ++
Sbjct: 228 AETDKDIIEAI----DDERFFMEIVLNIQEIREEHNINTPEDALEFIGRRVAP-GQIKDY 282
Query: 308 MIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLD 367
+K A+ +L +LPH+G KK + G + L G R EDD+DHY KR
Sbjct: 283 RLKRAETVLCNYLLPHLGVEKEDFPKKIRFLGIMARNALELYYGYRGEDDKDHYAYKRAK 342
Query: 368 LAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG 427
LAG L+ LFR F +L D++ +++ K ++Q A+++ +T +K+++ATG W
Sbjct: 343 LAGDLMEDLFRYAFNQLVKDIKYQLERQTLRNKTPSIQAAVRSDILTERIKHAMATGTW- 401
Query: 428 QGNAAGTRAGVSQVLNCLTYASTFTYY--LSWKLAK------PRQLHNSQWGMMCPAETP 479
G + GVSQ+L+ +Y +T + + LA+ R+LH + WG +CP+ETP
Sbjct: 402 ----VGGKTGVSQLLDRTSYLATNSQLRRIVSPLARSQPHFEARELHGTHWGKICPSETP 457
Query: 480 EGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
EG CGLVKN A+M +T ++E L+ +G +
Sbjct: 458 EGPNCGLVKNFAIMCKVTREEDDSKVIELLKSFGINEY 495
>gi|50546993|ref|XP_500966.1| YALI0B16258p [Yarrowia lipolytica]
gi|49646832|emb|CAG83219.1| YALI0B16258p [Yarrowia lipolytica CLIB122]
Length = 1169
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 167/532 (31%), Positives = 273/532 (51%), Gaps = 48/532 (9%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ 72
+E +T E+ W ++ A+ + KGLV+Q LDSF+ F +++I+ + + S +P
Sbjct: 40 DEISTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKILAANQMVL----SDVDPEF 95
Query: 73 QSDFAEIYLSKPMMTESD-GETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHD 126
+ +I + KP + D + +F RLR++TY+AP+YVD+ K VI++ +
Sbjct: 96 YLKYKDIRVGKPGIKFDDKNDDNAIFPHECRLRDMTYAAPIYVDIEYTKERKIVIQRNLE 155
Query: 127 GEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVF 186
++PIMLRSS C L +++ + +GECP D GGYFI+NG+EKV++ QE++S N + V
Sbjct: 156 IGKMPIMLRSSKCHLQDQTEEKMAAMGECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV- 214
Query: 187 KKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPI 246
+ ++ V + + + R T + + K S I +IPI
Sbjct: 215 ---EADEKKGVVQASVTSSTHERRSKTYVLTKNDKIYLKNNS-----------IVEDIPI 260
Query: 247 IILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEE----AFFIQNQ--QYIGKRGAT 300
+++ +A G D +I++ + Q+ E+ + EE F Q Q +Y+G + T
Sbjct: 261 VLILKAAGLVTDLEIMQAVA--GQNPVYQEIFAVNFEECSKLGVFTQRQALEYLGSKVKT 318
Query: 301 VGVTREKMIKYAK--EILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDR 358
+ K+ Y + E + ++ H+ + T+KA Y + R+++ + DDR
Sbjct: 319 SRRSNVKLTHYQEGLEAVATSIIAHISINNMDFTEKALYIAVMTRRVIMAMADPKMIDDR 378
Query: 359 DHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIKAKTI 413
D+ GNKRL+LAG LL LF LF+K D ++ + K + D L +I
Sbjct: 379 DYVGNKRLELAGQLLSLLFEDLFKKFNSDFKANIDKILKRPNRASMFDALLNLETHRGSI 438
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW RAGV+ VL+ L+Y S + S K++ PR L
Sbjct: 439 TSGMNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRAL 498
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
SQ+GM+C ++TPEG+ACGLVKNLALM +IT P+ G EN
Sbjct: 499 QPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEAPVRNLCYLLGAENI 550
>gi|347600624|gb|AEP15111.1| DNA-directed RNA polymerase subunit B [Emiliania huxleyi virus 88]
Length = 1156
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 181/538 (33%), Positives = 284/538 (52%), Gaps = 54/538 (10%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
+ ++ W+VI Y V Q++S+D F +N + I+ E +DI H+ G+ S
Sbjct: 4 SIEDATWSVIGDYINSVSPVAHQIESYDHFIENQLPYIISEGSDISY----MHSSGKVSH 59
Query: 76 ---FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT--------------K 118
F +++P + ESDG + ARLR LTYS+ + VDV
Sbjct: 60 HVHFTNPSVNRPAIQESDGFYKPITPHIARLRGLTYSSTVVVDVIHDRINHTVSPPTLIN 119
Query: 119 RVIKKGHDGEEVPIMLRSSYCTLYQNSQKALT---ELGECPYDEGGYFIINGSEKVLIAQ 175
R + + ++P+M+RS C L S+ L+ + EC D GGYFII+G+EK LI Q
Sbjct: 120 RKVFRNVIIAQIPVMVRSKLCYLADVSENDLSADAKKHECKVDPGGYFIISGNEKTLIPQ 179
Query: 176 EKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ--YI 233
K+ TNHV++F + K+ Y AEV S E++ R STI++ + S+G+ I
Sbjct: 180 TKIRTNHVFIFPSKHGEKHKYTAEVRSCHEAKLRSTSTIYM------NINDISNGEVPVI 233
Query: 234 HATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQ-MMELLRPSLEEAFFIQN-- 290
LP++++ + + ILFR LG + +DI+ +I +DT+ ++ ++ S + + ++
Sbjct: 234 TCKLPFLKSNLSVFILFRMLGAESTDDIINYIGNIPKDTEAILRIMLDSDTKQNYSRDAI 293
Query: 291 QQYIGKR--GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET--KKAYYFGHIIHRLL 346
++G+ T T+E KY I+ E+ PH+G + ET KK + GH+I RL+
Sbjct: 294 MDWVGRNVTSDTTRATKESREKYIDHIITSELAPHMGLVNNPETNKKKMIFIGHMIQRLM 353
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFR-KLTGDVRSYVQKCVDNGKDV--N 403
A G+ DDRD + NKR+D AG LL L R R + + ++K V++ ++ N
Sbjct: 354 SVATGQEVVDDRDDFINKRIDSAGALLALLLRQHHRGNAMQGLSTQLRKQVESPREATFN 413
Query: 404 LQFAIKAKTITGGLKYSLATGNW----GQGNAAGTRAGVSQVLNCLTYASTF--TYYLSW 457
+ + K IT GLK++ ATG W G G A G + GV Q+L LT +T + ++
Sbjct: 414 VGEIVSHKKITSGLKFAFATGTWGISRGGGTANGGQTGVVQILPRLTTMATLGASRKINT 473
Query: 458 KLAK------PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFL 509
+A+ PR LH S WG++C ++TPEGQACGLV NLA+ I IG+ PI L
Sbjct: 474 PIAREGRTAGPRMLHPSSWGLVCCSDTPEGQACGLVSNLAMTTRIRIGAPMQPIAILL 531
>gi|347482406|gb|AEO98347.1| DNA-directed RNA polymerase subunit B [Emiliania huxleyi virus 203]
gi|347600966|gb|AEP15452.1| DNA-directed RNA polymerase subunit B [Emiliania huxleyi virus 207]
gi|347601602|gb|AEP16087.1| DNA-directed RNA polymerase subunit B [Emiliania huxleyi virus 208]
gi|357972871|gb|AET98144.1| RNA polymerase II [Emiliania huxleyi virus 201]
Length = 1156
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 181/536 (33%), Positives = 283/536 (52%), Gaps = 54/536 (10%)
Query: 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD-- 75
++ W+VI Y V Q++S+D F +N + I+ E +DI H+ G+ S
Sbjct: 6 EDATWSVIGDYINSVSPVAHQIESYDHFIENQLPYIISEGSDISY----MHSSGKVSHHV 61
Query: 76 -FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT--------------KRV 120
F +++P + ESDG + ARLR LTYS+ + VDV R
Sbjct: 62 HFTNPSVNRPAIQESDGFYKPITPHIARLRGLTYSSTVVVDVIHDRINHTVSPPTLINRK 121
Query: 121 IKKGHDGEEVPIMLRSSYCTLYQNSQKALT---ELGECPYDEGGYFIINGSEKVLIAQEK 177
+ + ++P+M+RS C L S+ L+ + EC D GGYFII+G+EK LI Q K
Sbjct: 122 VFRNVIIAQIPVMVRSKLCYLADVSENDLSADAKKHECKVDPGGYFIISGNEKTLIPQTK 181
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ--YIHA 235
+ TNHV++F + K+ Y AEV S E++ R STI++ + S+G+ I
Sbjct: 182 IRTNHVFIFPSKHGEKHKYTAEVRSCHEAKLRSTSTIYM------NINDISNGEVPVITC 235
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQ-MMELLRPSLEEAFFIQN--QQ 292
LP++++ + + ILFR LG + +DI+ +I +DT+ ++ ++ S + + ++
Sbjct: 236 KLPFLKSNLSVFILFRMLGAESTDDIINYIGNIPKDTEAILRIMLDSDTKQNYSRDAIMD 295
Query: 293 YIGKR--GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET--KKAYYFGHIIHRLLLC 348
++G+ T T+E KY I+ E+ PH+G + ET KK + GH+I RL+
Sbjct: 296 WVGRNVTSDTTRATKESREKYIDHIITSELAPHMGLVNNPETNKKKMIFIGHMIQRLMSV 355
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFR-KLTGDVRSYVQKCVDNGKDV--NLQ 405
A G+ DDRD + NKR+D AG LL L R R + + ++K V++ ++ N+
Sbjct: 356 ATGQEVVDDRDDFVNKRIDSAGALLALLLRQHHRGNAMQGLSTQLRKQVESPREATFNVG 415
Query: 406 FAIKAKTITGGLKYSLATGNW----GQGNAAGTRAGVSQVLNCLTYASTF--TYYLSWKL 459
+ K IT GLK++ ATG W G G A G + GV Q+L LT +T + ++ +
Sbjct: 416 EIVSHKKITSGLKFAFATGTWGISRGGGTANGGQTGVVQILPRLTTMATLGASRKINTPI 475
Query: 460 AK------PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFL 509
A+ PR LH S WG++C ++TPEGQACGLV NLA+ I IG+ PI L
Sbjct: 476 AREGRTAGPRMLHPSSWGLVCCSDTPEGQACGLVSNLAMTTRIRIGAPMQPIAILL 531
>gi|366997769|ref|XP_003683621.1| hypothetical protein TPHA_0A01020 [Tetrapisispora phaffii CBS 4417]
gi|357521916|emb|CCE61187.1| hypothetical protein TPHA_0A01020 [Tetrapisispora phaffii CBS 4417]
Length = 1142
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 169/528 (32%), Positives = 268/528 (50%), Gaps = 54/528 (10%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI--EIRPESQHNPGQQS 74
T E+ W ++ A+ + KGLV+Q LDSF+ F +++I++ + I ++ PE
Sbjct: 37 TAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDKDLKKIIEANQVILSDVDPE--------- 87
Query: 75 DFAEIYLSKPMMTESDGETATLFL-KAARLRNLTYSAPLYVDV-----TKRVIKKGHDGE 128
F Y+ + +S G L RLR++TYSAP+YVD+ ++ K +
Sbjct: 88 -FYLKYVDIRIGEKSTGSKEKLVPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIG 146
Query: 129 EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKK 188
+PIMLRS+ C L QK + +L ECP D GGYFI+NG+EKV++ QE++S N + V
Sbjct: 147 RMPIMLRSNKCILNGADQKVMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV--- 203
Query: 189 RQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIII 248
+ ++ + + + + R T V + K S I E+PI I
Sbjct: 204 -EADEKKSIVQASVTSSTHERKSKTYVVTKNGKIYLKHNS-----------IAEEVPIAI 251
Query: 249 LFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA--FFIQNQQ----YIGKRGATVG 302
+ +A G +D +I++ +C + D+ ++ +LEEA I QQ YIG + T+
Sbjct: 252 ILKACGIVSDLEIMQLVCGN--DSSYQDIFAINLEEAVKLNISTQQQALEYIGSKVKTIR 309
Query: 303 VTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYG 362
+ +++ E + ++ H+ +KA Y + R+++ + DDRD+ G
Sbjct: 310 RQKLSILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAIENPKMVDDRDYVG 369
Query: 363 NKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIKAKTITGGL 417
NKRL+LAG L+ LF LF+K D ++ + K + D L + + IT GL
Sbjct: 370 NKRLELAGQLISLLFEDLFKKFNSDFKASIDKVLKKPNRAMEYDALLSINVHSNNITSGL 429
Query: 418 KYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQ 469
+++TGNW RAGV+ VL+ L+Y S + S K++ PR L SQ
Sbjct: 430 NRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQ 489
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
+GM+C A+TPEG+ACGLVKNLALM +IT PI + G E+
Sbjct: 490 FGMLCTADTPEGEACGLVKNLALMTHITTDDEEDPIKKLCYMLGVEDI 537
>gi|283481648|emb|CAZ69764.1| putative DNA-directed RNA polymerase II subunit precursor
[Emiliania huxleyi virus 99B1]
Length = 1507
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 181/538 (33%), Positives = 284/538 (52%), Gaps = 54/538 (10%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
+ ++ W+VI Y V Q++S+D F +N + I+ E +DI H+ G+ S
Sbjct: 4 SIEDATWSVIGDYINSVSPVAHQIESYDHFIENQLPYIISEGSDISY----MHSSGKVSH 59
Query: 76 ---FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT--------------K 118
F +++P + ESDG + ARLR LTYS+ + VDV
Sbjct: 60 HVHFTNPSVNRPAIQESDGFYKPITPHIARLRGLTYSSTVVVDVIHDRINHTVSPPTLIN 119
Query: 119 RVIKKGHDGEEVPIMLRSSYCTLYQNSQKALT---ELGECPYDEGGYFIINGSEKVLIAQ 175
R + + ++P+M+RS C L S+ L+ + EC D GGYFII+G+EK LI Q
Sbjct: 120 RKVFRNVIIAQIPVMVRSKLCYLADVSENDLSADAKKHECKVDPGGYFIISGNEKTLIPQ 179
Query: 176 EKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ--YI 233
K+ TNHV++F + K+ Y AEV S E++ R STI++ + S+G+ I
Sbjct: 180 TKIRTNHVFIFPSKHGEKHKYTAEVRSCHEAKLRSTSTIYM------NINDISNGEVPVI 233
Query: 234 HATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQ-MMELLRPSLEEAFFIQN-- 290
LP++++ + + ILFR LG + +DI+ +I +DT+ ++ ++ S + + ++
Sbjct: 234 TCKLPFLKSNLSVFILFRMLGAESTDDIINYIGNIPKDTEAILRIMLDSDTKQNYSRDAI 293
Query: 291 QQYIGKR--GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET--KKAYYFGHIIHRLL 346
++G+ T T+E KY I+ E+ PH+G + ET KK + GH+I RL+
Sbjct: 294 MDWVGRNVTSDTTRATKESREKYIDHIITSELAPHMGLVNNPETNKKKMIFIGHMIQRLM 353
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFR-KLTGDVRSYVQKCVDNGKDV--N 403
A G+ DDRD + NKR+D AG LL L R R + + ++K V++ ++ N
Sbjct: 354 SVATGQEVVDDRDDFINKRIDSAGALLALLLRQHHRGNAMQGLSTQLRKQVESPREATFN 413
Query: 404 LQFAIKAKTITGGLKYSLATGNW----GQGNAAGTRAGVSQVLNCLTYASTF--TYYLSW 457
+ + K IT GLK++ ATG W G G A G + GV Q+L LT +T + ++
Sbjct: 414 VGEIVSHKKITSGLKFAFATGTWGISRGGGTANGGQTGVVQILPRLTTMATLGASRKINT 473
Query: 458 KLAK------PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFL 509
+A+ PR LH S WG++C ++TPEGQACGLV NLA+ I IG+ PI L
Sbjct: 474 PIAREGRTAGPRMLHPSSWGLVCCSDTPEGQACGLVSNLAMTTRIRIGAPMQPIAILL 531
>gi|347481989|gb|AEO97975.1| DNA-directed RNA polymerase subunit B [Emiliania huxleyi virus 84]
Length = 1156
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 181/536 (33%), Positives = 283/536 (52%), Gaps = 54/536 (10%)
Query: 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD-- 75
++ W+VI Y V Q++S+D F +N + I+ E +DI H+ G+ S
Sbjct: 6 EDATWSVIGDYINSVSPVAHQIESYDHFIENQLPYIISEGSDISY----MHSSGKVSHHV 61
Query: 76 -FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT--------------KRV 120
F +++P + ESDG + ARLR LTYS+ + VDV R
Sbjct: 62 HFTNPSVNRPAIQESDGFYKPITPHIARLRGLTYSSTVVVDVIHDRINHTVSPPTLINRK 121
Query: 121 IKKGHDGEEVPIMLRSSYCTLYQNSQKALT---ELGECPYDEGGYFIINGSEKVLIAQEK 177
+ + ++P+M+RS C L S+ L+ + EC D GGYFII+G+EK LI Q K
Sbjct: 122 VFRNVIIAQIPVMVRSKLCYLADVSENDLSADAKKHECKVDPGGYFIISGNEKTLIPQTK 181
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ--YIHA 235
+ TNHV++F + K+ Y AEV S E++ R STI++ + S+G+ I
Sbjct: 182 IRTNHVFIFPSKHGEKHKYTAEVRSCHEAKLRSTSTIYM------NINDISNGEVPVITC 235
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQ-MMELLRPSLEEAFFIQN--QQ 292
LP++++ + + ILFR LG + +DI+ +I +DT+ ++ ++ S + + ++
Sbjct: 236 KLPFLKSNLSVFILFRMLGAESTDDIINYIGNIPKDTEAILRIMLDSDTKQNYSRDAIMD 295
Query: 293 YIGKR--GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET--KKAYYFGHIIHRLLLC 348
++G+ T T+E KY I+ E+ PH+G + ET KK + GH+I RL+
Sbjct: 296 WVGRNVTSDTTRATKESREKYIDHIITSELAPHMGLVNNPETNKKKMIFIGHMIQRLMSV 355
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFR-KLTGDVRSYVQKCVDNGKDV--NLQ 405
A G+ DDRD + NKR+D AG LL L R R + + ++K V++ ++ N+
Sbjct: 356 ATGQEVVDDRDDFINKRIDSAGALLALLLRQHHRGNAMQGLSTQLRKQVESPREATFNVG 415
Query: 406 FAIKAKTITGGLKYSLATGNW----GQGNAAGTRAGVSQVLNCLTYASTF--TYYLSWKL 459
+ K IT GLK++ ATG W G G A G + GV Q+L LT +T + ++ +
Sbjct: 416 EIVSHKKITSGLKFAFATGTWGISRGGGTANGGQTGVVQILPRLTTMATLGASRKINTPI 475
Query: 460 AK------PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFL 509
A+ PR LH S WG++C ++TPEGQACGLV NLA+ I IG+ PI L
Sbjct: 476 AREGRTAGPRMLHPSSWGLVCCSDTPEGQACGLVSNLAMTTRIRIGAPMQPIAILL 531
>gi|432094370|gb|ELK25947.1| DNA-directed RNA polymerase III subunit RPC2 [Myotis davidii]
Length = 1122
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 182/531 (34%), Positives = 270/531 (50%), Gaps = 62/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T E+ A I E KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 12 TPEQLAAPIPT-VEVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 66
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 67 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 126
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 127 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 184
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 185 -KGTVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVIIF 229
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 230 KAMGVECDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 281
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 282 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 340
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 341 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 400
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 401 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 460
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI+ G E+
Sbjct: 461 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVRLASNLGVED 511
>gi|73852908|ref|YP_294192.1| putative DNA-directed RNA polymerase II subunit [Emiliania huxleyi
virus 86]
gi|72415624|emb|CAI65861.1| putative DNA-directed RNA polymerase II subunit [Emiliania huxleyi
virus 86]
Length = 1156
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 181/538 (33%), Positives = 284/538 (52%), Gaps = 54/538 (10%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
+ ++ W+VI Y V Q++S+D F +N + I+ E +DI H+ G+ S
Sbjct: 4 SIEDATWSVIGDYINSVSPVAHQIESYDHFIENQLPYIISEGSDISY----MHSSGKVSH 59
Query: 76 ---FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT--------------K 118
F +++P + ESDG + ARLR LTYS+ + VDV
Sbjct: 60 HVHFTNPSVNRPAIQESDGFYKPITPHIARLRGLTYSSTVVVDVIHDRINHTVSPPTLIN 119
Query: 119 RVIKKGHDGEEVPIMLRSSYCTLYQNSQKALT---ELGECPYDEGGYFIINGSEKVLIAQ 175
R + + ++P+M+RS C L S+ L+ + EC D GGYFII+G+EK LI Q
Sbjct: 120 RKVFRNVIIAQIPVMVRSKLCYLADVSENDLSADAKKHECKVDPGGYFIISGNEKTLIPQ 179
Query: 176 EKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQ--YI 233
K+ TNHV++F + K+ Y AEV S E++ R STI++ + S+G+ I
Sbjct: 180 TKIRTNHVFIFPSKHGEKHKYTAEVRSCHEAKLRSTSTIYM------NINDISNGEVPVI 233
Query: 234 HATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQ-MMELLRPSLEEAFFIQN-- 290
LP++++ + + ILFR LG + +DI+ +I +DT+ ++ ++ S + + ++
Sbjct: 234 TCKLPFLKSNLSVFILFRMLGAESTDDIINYIGNIPKDTEAILRIMLDSDTKQNYSRDAI 293
Query: 291 QQYIGKR--GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET--KKAYYFGHIIHRLL 346
++G+ T T+E KY I+ E+ PH+G + ET KK + GH+I RL+
Sbjct: 294 MDWVGRNVTSDTTRATKESREKYIDHIITSELAPHMGLVNNPETNKKKMIFIGHMIQRLM 353
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFR-KLTGDVRSYVQKCVDNGKDV--N 403
A G+ DDRD + NKR+D AG LL L R R + + ++K V++ ++ N
Sbjct: 354 SVATGQEVVDDRDDFINKRIDSAGALLALLLRQHHRGNAMQGLSTQLRKQVESPREATFN 413
Query: 404 LQFAIKAKTITGGLKYSLATGNW----GQGNAAGTRAGVSQVLNCLTYASTF--TYYLSW 457
+ + K IT GLK++ ATG W G G A G + GV Q+L LT +T + ++
Sbjct: 414 VGEIVSHKKITSGLKFAFATGTWGISRGGGTANGGQTGVVQILPRLTTMATLGASRKINT 473
Query: 458 KLAK------PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFL 509
+A+ PR LH S WG++C ++TPEGQACGLV NLA+ I IG+ PI L
Sbjct: 474 PIAREGRTAGPRMLHPSSWGLVCCSDTPEGQACGLVSNLAITTRIRIGAPMQPIAILL 531
>gi|408381650|ref|ZP_11179198.1| DNA-directed RNA polymerase subunit B'' [Methanobacterium
formicicum DSM 3637]
gi|407815581|gb|EKF86151.1| DNA-directed RNA polymerase subunit B'' [Methanobacterium
formicicum DSM 3637]
Length = 496
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 159/501 (31%), Positives = 268/501 (53%), Gaps = 48/501 (9%)
Query: 21 AWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF---- 76
AW ++ +F+E LV + S+++F + +Q+I+D + I + +Q ++
Sbjct: 5 AWGLVDTFFDEYKLVDHHIKSYNDFVDHRIQDIIDITEPIVL---------EQGEYCIQT 55
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT------KRVIKKGHDGEEV 130
++ + KP + E+DG + +F ARLRNLTYSA +Y+D+ + ++K + GE +
Sbjct: 56 GKVEIRKPYIKEADGSKSKVFPTEARLRNLTYSAHMYMDMALSKGEEEPTLEKVYIGE-L 114
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
P+ML+S+ C L L + GE P D GGYFI+NGSE+ ++ E+++ N + + + +
Sbjct: 115 PVMLKSNICHLNGLGYNELEDNGEDPQDPGGYFIVNGSERAIVTMEEIAPNKIILERIGE 174
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILF 250
A V S+ F ++ K G ++ + PY+ EIP+++L
Sbjct: 175 KEDRRARAIVTSIKSG--------FRARITLEYRKPRKKGVFLRISFPYVPGEIPLVVLL 226
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ-QYIGKRGATVGVTREKMI 309
RALG D D++ + + D Q + + E + +YIG R A G+T E I
Sbjct: 227 RALGLEKDVDLVSSVSEE-NDVQFLLIDDIQTSEITNTYDAIKYIGNRVAK-GMTEEYRI 284
Query: 310 KYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLA 369
K A++++ + +LPH+G +KA Y + LL R D+DHY NKRL ++
Sbjct: 285 KRAEDVIDRYLLPHIGVEPEKRAEKATYLAEMTEMLLQVIFDEREPHDKDHYANKRLRVS 344
Query: 370 GPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQG 429
G L+ LFR F LT D+ +++ + GK+ +++ A+++ +T +K+++ATGNW
Sbjct: 345 GDLMEDLFRVAFTSLTRDMTYQLERSLARGKEPSVKQAVRSDVLTENIKHAIATGNW--- 401
Query: 430 NAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNSQWGMMCPAETP 479
G RAGVSQ+L+ +Y T ++ ++ P R LH +Q+G +CP ETP
Sbjct: 402 --VGGRAGVSQLLDRTSYMGTLSHL--KRVVSPLSRSQPHFEARDLHPTQFGKICPNETP 457
Query: 480 EGQACGLVKNLALMVYITIGS 500
EG CGLVKNLA++ I+ GS
Sbjct: 458 EGPNCGLVKNLAILAKISEGS 478
>gi|190347676|gb|EDK39998.2| DNA-directed RNA polymerase III 130 kDa polypeptide [Meyerozyma
guilliermondii ATCC 6260]
Length = 1156
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 170/532 (31%), Positives = 269/532 (50%), Gaps = 48/532 (9%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ 72
+E T ++ W ++ A+ + KGLV+Q LDSF+ F +++IV + + S +P
Sbjct: 31 DEINTVDDKWNLLPAFLKVKGLVKQHLDSFNFFVDVDLKKIVQANELVL----SDVDPDF 86
Query: 73 QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDG 127
+ +I + + + L RLR+LTYSAP+YVDV K ++ K +
Sbjct: 87 YLKYLDIRVGHKSTSSPGTKEVILPPHECRLRDLTYSAPIYVDVEYTRGRKIIMHKDLEI 146
Query: 128 EEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
+PIML+S+ C L + + +L ECP D GGYFI+NG+EKV++ QE++S N + V
Sbjct: 147 GRMPIMLKSNKCILDGINDHQMAKLDECPIDPGGYFIVNGTEKVILIQEQLSKNRIIV-- 204
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+ ++ + + + + R T + + K S G+ ++PI+
Sbjct: 205 --EADEKKGIVQASVTSSTHERKSKTYVITKNEKIYLKHNSIGE-----------DVPIV 251
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATV 301
I+ +A G T+D +IL+ +C + Q +L + EEA F Q Q Y+GKR TV
Sbjct: 252 IILKAAGITSDLEILQLVC--GSNPQYQDLFAVNFEEAARLEVFTQQQALNYVGKRVKTV 309
Query: 302 ---GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDR 358
G + ++ E + ++ H+ D +KA Y + R+L+ + DDR
Sbjct: 310 RRAGAPKLSQLQEGIEAIATTIIAHITVDDLQFREKALYIAMMARRVLMTMHNPKMVDDR 369
Query: 359 DHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIKAKTI 413
D+ GNKRL+LAG L+ LF LF+K D ++ + K + D L I + I
Sbjct: 370 DYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRASEFDALLSINIHSNNI 429
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW RAGV+ VL+ L+Y S + S K++ PR L
Sbjct: 430 TMGMNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRAL 489
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
SQ+GM+C ++TPEG+ACGLVKNLALM +IT PI G E+
Sbjct: 490 QPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIRSVCFALGCEDI 541
>gi|19114602|ref|NP_593690.1| DNA-directed RNA polymerase III complex subunit Rpc2
[Schizosaccharomyces pombe 972h-]
gi|1710663|sp|Q10233.1|RPC2_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit RPC2;
Short=RNA polymerase III subunit 2; Short=RNA polymerase
III subunit C2; AltName: Full=C128; AltName:
Full=DNA-directed RNA polymerase III 130 kDa
polypeptide; AltName: Full=RPC130
gi|1204209|emb|CAA93558.1| DNA-directed RNA polymerase III complex subunit Rpc2
[Schizosaccharomyces pombe]
gi|76782167|gb|ABA54854.1| RNA polymerase III large subunit Rpc2 [Schizosaccharomyces pombe]
Length = 1165
Score = 265 bits (678), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 171/529 (32%), Positives = 273/529 (51%), Gaps = 48/529 (9%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T E+ W ++ A+ + KGLV+Q LDS++ F +++IV + + S P +
Sbjct: 46 TIEDKWQLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIVQANEKVT----SDVEPWFYLKY 101
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT----KRVIKKGH-DGEEVP 131
+I + P+ T++D A++ RLR+LTY A +YVD+ K+V+++ + +P
Sbjct: 102 LDIRVGAPVRTDADAIQASISPHECRLRDLTYGANIYVDIEYTRGKQVVRRRNVPIGRMP 161
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
+MLRS+ C L ++ + L ECP D GGYFI+ G+EKV++ QE++S N + V + +P
Sbjct: 162 VMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVKGTEKVILVQEQLSKNRIIV--EAEP 219
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFR 251
K + A V S + R T + + K S + +IPI+++ +
Sbjct: 220 KKGLWQASVTS--STHERKSKTYVITKNGKLYLKHNS-----------VADDIPIVVVLK 266
Query: 252 ALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI------QNQQYIGKR---GATVG 302
A+G +D++I E + + +L PS+EE + Q +YIG R G
Sbjct: 267 AMGLQSDQEIFELVA--GAEASYQDLFAPSIEECAKLNIYTAQQALEYIGARVKVNRRAG 324
Query: 303 VTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYG 362
R + A E+L +L H+ + KA Y G + R+L+ + DDRD+ G
Sbjct: 325 ANRLPPHEEALEVLAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDRDYVG 384
Query: 363 NKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIKAKTITGGL 417
NKRL+LAG LL LF LF+K D++ + K + D Q + + IT G+
Sbjct: 385 NKRLELAGQLLALLFEDLFKKFNSDLKLNIDKVLKKPHRTQEFDAYNQLTVHSDHITQGM 444
Query: 418 KYSLATGNWGQGNAAGTRAGVSQVLNCLTYAS--------TFTYYLSWKLAKPRQLHNSQ 469
+L+TGNW RAGV+ VL+ L+Y S T + + K++ PR L SQ
Sbjct: 445 VRALSTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRSLQASQ 504
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
+GM+C ++TPEG+ACGLVKNLALM +IT PI++ +G E+
Sbjct: 505 FGMLCTSDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAYAFGIEDIH 553
>gi|255721739|ref|XP_002545804.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240136293|gb|EER35846.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 1159
Score = 265 bits (678), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 169/530 (31%), Positives = 270/530 (50%), Gaps = 48/530 (9%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ 72
+E T E+ W ++ A+ + KGLV+Q LDS++ F +++I+ + + S +P
Sbjct: 34 DEINTAEDKWNLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIIKANELVL----SDVDPEF 89
Query: 73 QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV---TKRVIKKGHDGE- 128
+ +I + + + L RLR+LTYSAP+YVDV R I + +D E
Sbjct: 90 YVKYLDIRVGHKSTAKPGVKEVILPPHECRLRDLTYSAPIYVDVEYTRGRKIIRHNDLEI 149
Query: 129 -EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
+P+MLRS+ C L S+ ++ ++ ECP D GGYF++NG+EKV++ QE++S N + V
Sbjct: 150 GRMPVMLRSNKCMLEGMSEASMAQVEECPLDPGGYFVVNGTEKVILVQEQLSKNRIIV-- 207
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+ ++ + + + + R T + + K S + +IPI+
Sbjct: 208 --EADEKKAIVQASVTSSTHERKSKTYVITKNDKIYLKHNS-----------VSEDIPIV 254
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQQ--YIGKRGATV 301
I+ +A G T+D +IL+ +C D +L + EEA F Q Q Y+GKR T+
Sbjct: 255 IILKAAGITSDLEILQLVC--GTDPNYQDLFVVNFEEAAKLEVFTQQQALLYVGKRVKTI 312
Query: 302 ---GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDR 358
G + ++ E + ++ H+ D +KA Y + R+++ + DDR
Sbjct: 313 RRAGAPKLSQLQEGIEAIATTIVAHLTVSDLQFREKALYIATMARRVVMAMHNPKMVDDR 372
Query: 359 DHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIKAKTI 413
D+ GNKRL+LAG L+ LF LF+K D ++ + K + D L I + I
Sbjct: 373 DYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINIHSNNI 432
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T GL +++TGNW RAGV+ VL+ L+Y S + S K++ PR L
Sbjct: 433 TMGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRAL 492
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
SQ+GM+C A+TPEG+ACGLVKNLALM +IT P+ + G E
Sbjct: 493 QPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEAPVKKLCIALGCE 542
>gi|73671122|ref|YP_307137.1| DNA-directed RNA polymerase subunit beta'' [Methanosarcina barkeri
str. Fusaro]
gi|72398284|gb|AAZ72557.1| DNA-directed RNA polymerase, subunit B' [Methanosarcina barkeri
str. Fusaro]
Length = 531
Score = 265 bits (678), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 164/482 (34%), Positives = 253/482 (52%), Gaps = 44/482 (9%)
Query: 35 VRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGETA 94
++ +DSF++F +Q+I+DE IE E + +I + P++ E+DG
Sbjct: 1 MQHHIDSFNKFIDYGLQKIIDEQKIIETDIEDTY-----LKLGKIRVEHPVVKEADGAIE 55
Query: 95 TLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE-------EVPIMLRSSYCTLYQNSQK 147
L+ ARLRNL+YS PLY++++ V+K+G + E ++PIM++S C L S+
Sbjct: 56 KLYPNEARLRNLSYSGPLYLEMS--VVKEGIESEPMEAKIGQLPIMVKSKICNLPGLSET 113
Query: 148 ALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQ 207
GE P D GGYFII G+E+V++ E ++ N + V +Y EV + SQ
Sbjct: 114 EKVRYGEDPLDPGGYFIIGGTERVVMTLEDLAPNKILV---EYGERYGDTIEVAKVF-SQ 169
Query: 208 NRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICY 267
R + + R S + + P I + I L RALG DEDI+ +
Sbjct: 170 KRGYRALVIVERGRKS--------LLEVSFPSISGRVFFITLMRALGIVTDEDIVNAVS- 220
Query: 268 DFQDTQMMELLRPSLEEAFFIQNQQYIGKRGATV--GVTREKMIKYAKEILQKEMLPHVG 325
D ++++ + +LEEA + I K GA V G +E IK A ++ + + PH+G
Sbjct: 221 --SDPEIIKFMLENLEEAEVETQDEAIEKIGARVAAGQAKEYQIKRANYVIDRYLFPHLG 278
Query: 326 TGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLT 385
KA++ + ALG+R+EDD+DHY NKRL LAG L+ LFR F +L
Sbjct: 279 NDMKDRISKAHFLARMAESCFELALGKRSEDDKDHYANKRLKLAGDLMEDLFRVSFNRLA 338
Query: 386 GDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCL 445
D++ +++ +++N+ ++A +T L++ LATGNW G R GVSQ+L+
Sbjct: 339 RDIKYQLERANMRNRELNVATIVRADVLTDRLQHPLATGNW-----VGGRTGVSQLLDRN 393
Query: 446 TYASTFTYYLS----WKLAKP----RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 497
Y ST ++ A+P R LH +QWG +CP+ETPEG CGLVKN A MV ++
Sbjct: 394 DYISTLSHLRRVISPLSRAQPHFEARDLHATQWGRLCPSETPEGPNCGLVKNFAEMVELS 453
Query: 498 IG 499
G
Sbjct: 454 TG 455
>gi|356927898|gb|AET42688.1| RNA polymerase II [Emiliania huxleyi virus 202]
Length = 916
Score = 265 bits (678), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 179/538 (33%), Positives = 285/538 (52%), Gaps = 54/538 (10%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T ++ W+V+ Y V QL+S+D F +N + I+ E +DI H+ G+ S
Sbjct: 4 TIEDATWSVVGDYINSVSQVAHQLESYDHFIENQLPYIIGEGSDISY----MHSNGKVSH 59
Query: 76 ---FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT--------------K 118
F +++P + ESDG + ARLR LTYS+ + VDV
Sbjct: 60 HVHFTNPSVNRPAIQESDGFYKPITPHIARLRGLTYSSTVVVDVVHDRIDHTVSPPKLIS 119
Query: 119 RVIKKGHDGEEVPIMLRSSYCTLYQNSQKALT---ELGECPYDEGGYFIINGSEKVLIAQ 175
R + + ++P+M+RS C L S+ L+ + EC D GGYFII+G+EK LI Q
Sbjct: 120 RKVFRNVIIAQIPVMVRSKLCYLSDVSENELSADAKKHECKVDPGGYFIISGNEKTLIPQ 179
Query: 176 EKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQY--I 233
K+ TNHV++F + K+ Y AEV S E++ R STI++ + S+G+ I
Sbjct: 180 TKIRTNHVFIFPSKHGEKHKYTAEVRSCHEAKLRSTSTIYMHI------NDISNGEVPII 233
Query: 234 HATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQ-MMELLRPSLEEAFFIQNQ- 291
LP++++ + + +LFR LG +DI+ +I ++T+ ++ ++ S + + +++
Sbjct: 234 TCKLPFLKSNLSVFVLFRMLGSENTDDIINYIGNIPKNTEAILRIMLDSDTKQNYSRDEI 293
Query: 292 -QYIGKR--GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET--KKAYYFGHIIHRLL 346
++G+ T T+E KY I+ E++PH+G + ET KK + GH+I RL+
Sbjct: 294 MDWVGRNVTSDTTRATKEAREKYVDHIITSELVPHMGLTNNPETNKKKMIFIGHMIQRLM 353
Query: 347 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFR-KLTGDVRSYVQKCVDNGKD--VN 403
A + DDRD + NKR+D AG LL L R R + + ++K V++ ++ N
Sbjct: 354 SVATAQEVVDDRDDFINKRVDSAGALLALLLRQHHRGSAMQGLSTQLRKQVESPRESTFN 413
Query: 404 LQFAIKAKTITGGLKYSLATGNW----GQGNAAGTRAGVSQVLNCLTYASTF--TYYLSW 457
+ + K IT GLK++ ATG W G G A G + GV Q+L LT +T + ++
Sbjct: 414 VGEIVSHKKITSGLKFAFATGTWGISRGGGTANGGQTGVVQILPRLTTMATLGSSRKINT 473
Query: 458 KLAK------PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFL 509
+A+ PR LH S WG++C ++TPEGQACGLV NLA+ I IG+ PI + L
Sbjct: 474 PIAREGRTAGPRMLHPSSWGLVCCSDTPEGQACGLVSNLAMTTRIRIGAPMQPIAKLL 531
>gi|366989721|ref|XP_003674628.1| hypothetical protein NCAS_0B01700 [Naumovozyma castellii CBS 4309]
gi|342300492|emb|CCC68254.1| hypothetical protein NCAS_0B01700 [Naumovozyma castellii CBS 4309]
Length = 1150
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 170/536 (31%), Positives = 274/536 (51%), Gaps = 63/536 (11%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI--EIRPE----- 65
+E T E+ W ++ A+ + KGLV+Q LDSF+ F +++I+ + I ++ PE
Sbjct: 38 DEINTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANQVILSDVDPEFYLKY 97
Query: 66 SQHNPGQQS-DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKR 119
G++S A+ YL+ P RLR++TYSAP+YVD+
Sbjct: 98 VDIRVGKRSTSSAKDYLTPP--------------HECRLRDMTYSAPIYVDIEYTRGRNI 143
Query: 120 VIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMS 179
++ K + +PIMLRS+ CTLY +K + +L ECP D GGYFI+NG+EKV++ QE++S
Sbjct: 144 IMHKDVELGRMPIMLRSNKCTLYGIDEKEMAKLNECPLDPGGYFIVNGTEKVILVQEQLS 203
Query: 180 TNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPY 239
N + V + ++ + + + + R T + + K S
Sbjct: 204 KNRIIV----EADEKKGIVQASVTSSTHERRSKTYVITKNDKIYLKHNS----------- 248
Query: 240 IRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QY 293
I EIPI+I+ +A G +D +I++ +C + D+ ++ +LEEA + Q Q ++
Sbjct: 249 ITEEIPIVIVLKACGVVSDLEIMQLVCGN--DSSYQDIFAVNLEEASRLNIYTQQQALEF 306
Query: 294 IGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRR 353
IG + T+ + +++ E + ++ H+ +KA Y + R+++ +
Sbjct: 307 IGTKVKTMRRQKLSVLQEGIEAIATTVVAHLTVEALDFREKALYMAMMTRRVVMAIQNPK 366
Query: 354 AEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAI 408
DDRD+ GNKRL+LAG L+ LF LF+K D ++ + K + D L +
Sbjct: 367 MVDDRDYVGNKRLELAGQLISLLFEDLFKKFNSDFKATIDKVLKKPNRAMEYDALLSINV 426
Query: 409 KAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLA 460
+ IT GL +++TGNW RAGV+ VL+ L+Y S + S K++
Sbjct: 427 HSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVS 486
Query: 461 KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
PR L SQ+GM+C A+TPEG+ACGLVKNLALM +IT PI G E+
Sbjct: 487 GPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKRLCYILGVED 542
>gi|357289763|gb|AET73076.1| RNA polymerase II 140 kDa subunit [Phaeocystis globosa virus 12T]
gi|357292563|gb|AET73899.1| RNA polymerase II 140 kDa subunit [Phaeocystis globosa virus 14T]
Length = 1202
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 173/558 (31%), Positives = 274/558 (49%), Gaps = 80/558 (14%)
Query: 18 QEEAWAVISAYFEE---KGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQ------- 67
+E WA+I ++F+ K L+R Q++S++ +++ + I I E
Sbjct: 33 EEAPWALIESHFKNQHLKQLIRHQIESYNYLVNTQLEQTIAMFNPIRICSEHDWEKEYNL 92
Query: 68 HNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT---------- 117
H + +P + E++G T +F + ARLRN TY+ + VD+
Sbjct: 93 HRLVAHVTLENFNIHRPQVYENNGATKIMFPQEARLRNFTYAGAMTVDLNIKYTVRNGEN 152
Query: 118 -------KRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEK 170
+V+K H G+ +PIMLRS C L Q + GEC D GGYFIINGSEK
Sbjct: 153 YKNTQTYNKVLKNIHIGK-LPIMLRSDICVLSQYKHLNTDQTGECKMDPGGYFIINGSEK 211
Query: 171 VLIAQEKMSTNHVYVFKKRQPN-KYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSS 229
+AQE+ + N + F + N K+ + AE+ + + P I L R++ G
Sbjct: 212 TCLAQERAAENQIACFNISKNNTKWTWNAEMKCIPHWKCISPKQI---NLYRSTKDNGF- 267
Query: 230 GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQ---MMELLRPSLEEA- 285
G I+ +P ++ IP+ I+FRA +D+D+ E + D D + M+ L+ S+ +A
Sbjct: 268 GNSIYLQIPRLKNPIPLFIIFRAFNIISDKDVCEKVILDIDDKKHRRMLYGLQGSIVDAN 327
Query: 286 ----------FFIQNQQYIGKRGATVGVTREKMIK----YAKEILQKEMLPHVGTGDFCE 331
+ I N Y + V +E K +A E++ ++ PH T
Sbjct: 328 TCLTYEDALNYIISNVIY-----TPLNVDKETGYKRKHDFALEVINNDIFPHCRT----T 378
Query: 332 TKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSY 391
+K Y G++ ++LL + G DRD Y NKR+DL G L+ LFR KL D++
Sbjct: 379 AQKVYMLGYMTNKLLQTSFGWMEPTDRDSYLNKRVDLTGSLINNLFRNYLNKLVKDMQKQ 438
Query: 392 VQKCVDNG------------KDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVS 439
V + +++G N+ IK+ TI G+K +LATG++G + GV+
Sbjct: 439 VVREINSGSWKSNEDYENIINSTNIYKIIKSVTIENGIKRALATGDFGIKQINSNKVGVA 498
Query: 440 QVLNCLTYASTFTYYL--------SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 491
QVLN LTY S+ ++ S KL PR+LHNS WG +CPAETPEG + G+VKNL+
Sbjct: 499 QVLNRLTYISSISHLRRVNTPIDKSGKLVPPRRLHNSSWGFLCPAETPEGASVGIVKNLS 558
Query: 492 LMVYITIGSAAYPILEFL 509
M ++TI + + +++
Sbjct: 559 YMTHVTIPTNTTILYDYI 576
>gi|146414794|ref|XP_001483367.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Meyerozyma
guilliermondii ATCC 6260]
Length = 1156
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 170/532 (31%), Positives = 269/532 (50%), Gaps = 48/532 (9%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ 72
+E T ++ W ++ A+ + KGLV+Q LDSF+ F +++IV + + S +P
Sbjct: 31 DEINTVDDKWNLLPAFLKVKGLVKQHLDSFNFFVDVDLKKIVQANELVL----SDVDPDF 86
Query: 73 QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDG 127
+ +I + + + L RLR+LTYSAP+YVDV K ++ K +
Sbjct: 87 YLKYLDIRVGHKSTSSPGTKEVILPPHECRLRDLTYSAPIYVDVEYTRGRKIIMHKDLEI 146
Query: 128 EEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
+PIML+S+ C L + + +L ECP D GGYFI+NG+EKV++ QE++S N + V
Sbjct: 147 GRMPIMLKSNKCILDGINDHQMAKLDECPIDPGGYFIVNGTEKVILIQEQLSKNRIIV-- 204
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+ ++ + + + + R T + + K S G+ ++PI+
Sbjct: 205 --EADEKKGIVQASVTSSTHERKSKTYVITKNEKIYLKHNSIGE-----------DVPIV 251
Query: 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATV 301
I+ +A G T+D +IL+ +C + Q +L + EEA F Q Q Y+GKR TV
Sbjct: 252 IILKAAGITSDLEILQLVC--GSNPQYQDLFAVNFEEAARLEVFTQQQALNYVGKRVKTV 309
Query: 302 ---GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDR 358
G + ++ E + ++ H+ D +KA Y + R+L+ + DDR
Sbjct: 310 RRAGAPKLSQLQEGIEAIATTIIAHITVDDLQFREKALYIAMMARRVLMTMHNPKMVDDR 369
Query: 359 DHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIKAKTI 413
D+ GNKRL+LAG L+ LF LF+K D ++ + K + D L I + I
Sbjct: 370 DYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRALEFDALLSINIHSNNI 429
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW RAGV+ VL+ L+Y S + S K++ PR L
Sbjct: 430 TMGMNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRAL 489
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
SQ+GM+C ++TPEG+ACGLVKNLALM +IT PI G E+
Sbjct: 490 QPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIRLVCFALGCEDI 541
>gi|410081580|ref|XP_003958369.1| hypothetical protein KAFR_0G02000 [Kazachstania africana CBS 2517]
gi|372464957|emb|CCF59234.1| hypothetical protein KAFR_0G02000 [Kazachstania africana CBS 2517]
Length = 1148
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 169/533 (31%), Positives = 271/533 (50%), Gaps = 55/533 (10%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI--EIRPESQHNP 70
+E T E+ W ++ A+ + KGLV+Q LDSF+ F +++I+ + I ++ PE
Sbjct: 38 DEINTAEDKWHLLPAFLKVKGLVKQHLDSFNYFVDIDLKKIIKANQTILSDVDPE----- 92
Query: 71 GQQSDFAEIYLSKPMMTESDGETATLFLKA--ARLRNLTYSAPLYVDV-----TKRVIKK 123
F Y+ + +S T RLR++TYSAP+YVD+ ++ K
Sbjct: 93 -----FYLKYVDIRIGKKSTSSTKDYLTPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHK 147
Query: 124 GHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHV 183
+ +PIMLRS+ CTLY + + +L ECP D GGYFI+NG+EKV++ QE++S N +
Sbjct: 148 DVEIGRMPIMLRSNKCTLYGCDEAEMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRI 207
Query: 184 YVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTE 243
V + ++ + + + + R T V + K S I E
Sbjct: 208 IV----EADEKKGIVQASVTSSTHERKSKTYVVTKNDKIYLKHNS-----------ISEE 252
Query: 244 IPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA--FFIQNQQ----YIGKR 297
IPI+I+ +A G ++ +I++ +C + D+ ++ ++EEA F I QQ YIG +
Sbjct: 253 IPIVIVLKACGVVSELEIMQLVCGN--DSSYQDIFAVNIEEASKFNIYTQQQALEYIGAK 310
Query: 298 GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDD 357
T+ + +++ E + ++ H+ +KA Y + R+++ + DD
Sbjct: 311 VKTMRRQKLTVLQEGIEAIATTVIAHLTVEALNFREKALYMAMMTRRVVMAMHNPKMVDD 370
Query: 358 RDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIKAKT 412
RD+ GNKRL+LAG L+ LF LF+K D ++ + K + D L + +
Sbjct: 371 RDYVGNKRLELAGQLISLLFEDLFKKFNSDFKASIDKVLKKPNRAMEYDALLSINVHSNN 430
Query: 413 ITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQ 464
IT GL +++TGNW RAGV+ VL+ L+Y S + S K++ PR
Sbjct: 431 ITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRA 490
Query: 465 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
L SQ+GM+C A+TPEG+ACGLVKNLALM +IT PI + G E+
Sbjct: 491 LQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDI 543
>gi|303319249|ref|XP_003069624.1| DNA-directed RNA polymerase III, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240109310|gb|EER27479.1| DNA-directed RNA polymerase III, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320040958|gb|EFW22891.1| DNA-directed RNA polymerase 3 subunit RPC2 [Coccidioides posadasii
str. Silveira]
Length = 1197
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 177/540 (32%), Positives = 275/540 (50%), Gaps = 58/540 (10%)
Query: 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD 75
T+++ W ++ A+ + KGLV+Q +DS++ F + +++IV SA+I S +P
Sbjct: 66 NTEKDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIR----SDVDPNFYIR 121
Query: 76 FAEIYLSKPMMT-ESDGETATLFLKAA------RLRNLTYSAPLYVDV-----TKRVIKK 123
F +IYL P E E A +++ RLR++TY+AP+ VD +RV +
Sbjct: 122 FHDIYLGSPRRADEEQSEDARFKIESTVTPNECRLRDMTYAAPILVDFEYVRGRQRVKRN 181
Query: 124 GHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHV 183
G +P+MLRSS C L + S + + L ECP D GGYFI+NG+EKV++ QE++S N V
Sbjct: 182 GTAIGRMPVMLRSSKCVLSKKSPREMYLLHECPLDPGGYFIVNGTEKVILVQEQLSKNRV 241
Query: 184 YVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTE 243
V + P K A V S S N S +V + I+ + +
Sbjct: 242 IV--ETDPKKEIVQASVTS---SSNERKSKSYVIL----------KKDRIYLRHNVLSDD 286
Query: 244 IPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIG-- 295
IP++IL +A+G +D+++L + D+ E + EE+ + Q Q +Y+G
Sbjct: 287 IPVVILLKAMGIQSDKEML--LLVAGVDSVYQEDFAINFEESIKLGIYTQQQALEYLGSH 344
Query: 296 ----KRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
++ G R I+ A E + ++ HV + KA Y H+ R+L+
Sbjct: 345 IKITRKPNGFGGGRRNYIQEAVEAIASVIISHVQVENMNFRPKALYVAHMARRVLMAKHD 404
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN-----GKDVNLQF 406
DDRD+ GNKRL+LAG LL LF LF+K D++ + K + D
Sbjct: 405 SSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAFSVV 464
Query: 407 AIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWK 458
AI IT G+ +++TGNW RAGV+ VL+ L+Y S + + K
Sbjct: 465 AIHGNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYISALGMMTRISSQFEKTRK 524
Query: 459 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
++ PR L SQ+GM+CP++TPEG+ACGLVKNLALM +IT P+ + + G E+ +
Sbjct: 525 VSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLVFALGAEDVQ 584
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,154,982,464
Number of Sequences: 23463169
Number of extensions: 349983913
Number of successful extensions: 1158266
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8483
Number of HSP's successfully gapped in prelim test: 3103
Number of HSP's that attempted gapping in prelim test: 1123774
Number of HSP's gapped (non-prelim): 20212
length of query: 518
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 371
effective length of database: 8,910,109,524
effective search space: 3305650633404
effective search space used: 3305650633404
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)